BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 007519
         (600 letters)

Database: nr 
           23,463,169 sequences; 8,064,228,071 total letters

Searching..................................................done



>gi|297744236|emb|CBI37206.3| unnamed protein product [Vitis vinifera]
          Length = 664

 Score =  875 bits (2262), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 417/589 (70%), Positives = 495/589 (84%), Gaps = 11/589 (1%)

Query: 11  VVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPE 70
           VV  TS ++K+SK GFIDEA+ALF++MP+RNVV+YNAMLSG++Q GRLS+A R FEEMPE
Sbjct: 76  VVCWTSLLSKFSKNGFIDEARALFEIMPERNVVTYNAMLSGYVQCGRLSDACRFFEEMPE 135

Query: 71  RNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSM 130
           RNVVSWT+++CGLA+AGR+ EAR+LF  MPERNVVSWNSM+VGLIR+G+L EAR+VFN M
Sbjct: 136 RNVVSWTSLLCGLANAGRIGEARELFNVMPERNVVSWNSMLVGLIRSGQLEEARRVFNEM 195

Query: 131 PIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFR 190
           P+K+ +SWN MIAGY E   M EA VLF+ M +RNVVTWTSMISGYCRAG V+EGYCLF+
Sbjct: 196 PVKSQVSWNVMIAGYAEHSRMEEARVLFDGMGDRNVVTWTSMISGYCRAGNVQEGYCLFQ 255

Query: 191 RMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGR 250
           +MP +NVVSWTAMIGGFAWNGF+KE+L           N  + N QSCNSMINGYIR G+
Sbjct: 256 KMPERNVVSWTAMIGGFAWNGFYKEAL-----------NSMSYNTQSCNSMINGYIRIGQ 304

Query: 251 LEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQN 310
           LE+AQ+LFDT+PVRD+ISWTSMI+GY +VGQ++ A YLF+NMPDRDAVAWT M+SG VQN
Sbjct: 305 LEKAQSLFDTIPVRDKISWTSMINGYFNVGQIAKACYLFNNMPDRDAVAWTVMVSGHVQN 364

Query: 311 ELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILE 370
           ELF EATYLF EMR  GV PLN+TFS+L GAAGA A +D GRQ HC+LMKT+ E DLIL+
Sbjct: 365 ELFAEATYLFSEMRVKGVSPLNSTFSILLGAAGAMAYLDQGRQFHCLLMKTQFEFDLILQ 424

Query: 371 NCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTH 430
           N LISMYAKCG I +AY+IFS M+SRDL+SWNSM+MGFSHHGL +E LKVFE+ML SGTH
Sbjct: 425 NSLISMYAKCGEIGDAYSIFSKMISRDLISWNSMIMGFSHHGLTSEALKVFEAMLTSGTH 484

Query: 431 PNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEE 490
           PNSVTFLGILSACSHAGL+++GWELF+AM DV+ IQP  EHYV M+NLLGRAGK++EAEE
Sbjct: 485 PNSVTFLGILSACSHAGLLNQGWELFDAMSDVFAIQPQLEHYVCMVNLLGRAGKVEEAEE 544

Query: 491 FVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASG 550
           F+ +LPFEPD  IWGALLG CGF   N  +A  AAKRLLELDPLNAPAHVVLCNI+A+ G
Sbjct: 545 FISKLPFEPDLTIWGALLGVCGFGMINTGVARRAAKRLLELDPLNAPAHVVLCNIHASIG 604

Query: 551 RHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEIL 599
           +  EE +LR +MGLKGVRKVPGCSW++  G   +FLSGD+I  Q  E+L
Sbjct: 605 QRAEEGQLRKEMGLKGVRKVPGCSWILLKGEPYVFLSGDRIHPQADEML 653



 Score =  168 bits (426), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 124/417 (29%), Positives = 193/417 (46%), Gaps = 57/417 (13%)

Query: 108 NSMVVGLIRNGELNEARKVFNSMP----IKNVISWNAMIAGYVECCMMGEAIVLFEEMEE 163
           +S ++  +    L EAR + + MP    +  V+ W ++++ + +   + EA  LFE M E
Sbjct: 45  DSQILECLSQQRLREARHMLDEMPNRGVLDRVVCWTSLLSKFSKNGFIDEARALFEIMPE 104

Query: 164 RNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEM 223
           RNVVT+ +M+SGY + G + +    F  MP +NVVSWT+++ G A  G   E+  LF  M
Sbjct: 105 RNVVTYNAMLSGYVQCGRLSDACRFFEEMPERNVVSWTSLLCGLANAGRIGEARELFNVM 164

Query: 224 KGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEIS--------------- 268
                     NV S NSM+ G IR G+LEEA+ +F+ +PV+ ++S               
Sbjct: 165 P-------ERNVVSWNSMLVGLIRSGQLEEARRVFNEMPVKSQVSWNVMIAGYAEHSRME 217

Query: 269 ----------------WTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNEL 312
                           WTSMI GY   G V   Y LF  MP+R+ V+WTAMI G   N  
Sbjct: 218 EARVLFDGMGDRNVVTWTSMISGYCRAGNVQEGYCLFQKMPERNVVSWTAMIGGFAWNGF 277

Query: 313 FVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGR-QIHCVLMKTESESDLILEN 371
           + EA    +   ++     N+  +           I +G+ +    L  T    D I   
Sbjct: 278 YKEA----LNSMSYNTQSCNSMIN---------GYIRIGQLEKAQSLFDTIPVRDKISWT 324

Query: 372 CLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHP 431
            +I+ Y   G I  A  +F+NM  RD V+W  MV G   + L  E   +F  M   G  P
Sbjct: 325 SMINGYFNVGQIAKACYLFNNMPDRDAVAWTVMVSGHVQNELFAEATYLFSEMRVKGVSP 384

Query: 432 NSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEA 488
            + TF  +L A      + +G + F+ +    + +       S+I++  + G+I +A
Sbjct: 385 LNSTFSILLGAAGAMAYLDQGRQ-FHCLLMKTQFEFDLILQNSLISMYAKCGEIGDA 440


>gi|255575746|ref|XP_002528772.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223531775|gb|EEF33594.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 676

 Score =  810 bits (2093), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 400/664 (60%), Positives = 488/664 (73%), Gaps = 68/664 (10%)

Query: 4   RNHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARR 63
           +  P S +V+ TS ++KYS+ GF+DEA+ALF +MP+RN VSYNA+LSG LQ GRLSEA +
Sbjct: 3   KRSPLSRIVYWTSLLSKYSRSGFVDEARALFDIMPERNAVSYNALLSGLLQCGRLSEAMK 62

Query: 64  LFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEA 123
           LFEEMPERNVVSWT+M+CGLADAG++CEA+ LFEEMP+RNVVSWN+M+VGLIRNG+L  A
Sbjct: 63  LFEEMPERNVVSWTSMLCGLADAGKICEAKSLFEEMPDRNVVSWNAMIVGLIRNGDLEAA 122

Query: 124 RKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVE 183
           R VF+  P+KN  SWN MIAGY E   M EA  LF+EME+RNV+TWTSM+SGYCRAGEVE
Sbjct: 123 RMVFDESPVKNAASWNGMIAGYAENGRMEEARALFDEMEDRNVITWTSMVSGYCRAGEVE 182

Query: 184 EGY-------------------------------CLFRRMPR-----KNVVSWTAMIGGF 207
           EGY                                LF  M R      N+ ++ ++    
Sbjct: 183 EGYHLFRTMPKRNIVSWTAMIGGFTWNGFYEDALLLFLEMKRGADITPNIETFISLAYAC 242

Query: 208 AWNGFHK------------------------ESLLLFIEMKGICD--------NGNNCNV 235
           A  GFH+                        + L+      G  D        N N   V
Sbjct: 243 AGLGFHRLGKQLHARLITEGLDNDDYDGRLSKGLICMYSSIGFMDYAHYIFNKNSNYYVV 302

Query: 236 QSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDR 295
           QSCN MINGYIR G L++AQNLFDT+PVRD+I+WTSMIDGYL +G VS A  LF  MP++
Sbjct: 303 QSCNYMINGYIRIGLLDKAQNLFDTMPVRDKITWTSMIDGYLVIGNVSEACSLFLYMPEK 362

Query: 296 DAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIH 355
           DAVAWT MISG V+NELF EATYLF EM   GV PL++T+++LFGAAGA A++D GRQ+H
Sbjct: 363 DAVAWTTMISGHVRNELFAEATYLFSEMLTQGVRPLSSTYAILFGAAGAVASLDQGRQLH 422

Query: 356 CVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLAN 415
            +L KT S++DLILEN LISMYAKCG I NAY IFS M+S DL+SWNSM+MGFSHHGLAN
Sbjct: 423 AMLTKTLSDNDLILENSLISMYAKCGEIRNAYRIFSQMISHDLISWNSMIMGFSHHGLAN 482

Query: 416 ETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSM 475
           E L+VFE+M++SGTHPNSVTFLG+LSACSHAGL+++GWE+FNAM DV+ +QPG EHY+ M
Sbjct: 483 EALEVFEAMVDSGTHPNSVTFLGVLSACSHAGLINQGWEIFNAMSDVFAVQPGLEHYICM 542

Query: 476 INLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLN 535
           +NLLGRAGK+KEAEE +L LP E +H IWGALLG C F E NA+IA+ AA R+LELDPLN
Sbjct: 543 VNLLGRAGKLKEAEELILGLPLERNHAIWGALLGVCSFSEKNADIAKRAATRILELDPLN 602

Query: 536 APAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQV 595
           APAHV+LCNIYAASG+H+EEHKLR +MGLKGV+KVPGCSW++ NG + +FLSGDK   Q 
Sbjct: 603 APAHVLLCNIYAASGQHIEEHKLRKEMGLKGVKKVPGCSWIVLNGRVHVFLSGDKPRLQA 662

Query: 596 AEIL 599
            ++L
Sbjct: 663 KDML 666


>gi|224126355|ref|XP_002329533.1| predicted protein [Populus trichocarpa]
 gi|222870242|gb|EEF07373.1| predicted protein [Populus trichocarpa]
          Length = 693

 Score =  799 bits (2063), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 395/660 (59%), Positives = 486/660 (73%), Gaps = 68/660 (10%)

Query: 9   SLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEM 68
           S + H TS +TKYS+ GFIDE++ LF +MP+RN+VSYN MLSG+LQ GRLSEAR LFEEM
Sbjct: 31  SRIAHWTSLLTKYSRIGFIDESRVLFDIMPERNIVSYNVMLSGYLQCGRLSEARGLFEEM 90

Query: 69  PERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFN 128
           PERNVVSWT+M+CGLADAGR+CEAR+LF+EMPERNVVSWN+MV GLI+N +L EAR+VF+
Sbjct: 91  PERNVVSWTSMLCGLADAGRICEARELFKEMPERNVVSWNAMVAGLIKNEDLEEARRVFD 150

Query: 129 SMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVE----- 183
            +P KNV+SWNAMI G+ E   M EA VLFEEME+RNV+TWT+MI+GYCR G+V      
Sbjct: 151 EIPEKNVVSWNAMIKGFAENGKMEEARVLFEEMEDRNVITWTTMIAGYCRIGDVREAYCF 210

Query: 184 --------------------------EGYCLFRRMPRKNVVSWTA--------------- 202
                                     E   LF  M R++ ++                  
Sbjct: 211 FCRIPERNVVSWTAMISGFTWNGYYGEALLLFLEMKRRSNIAPNGETFISLAYACAGMRF 270

Query: 203 -----------MIGGFAW---NGFHKESLLLFIEMKGICD--------NGNNCNVQSCNS 240
                      +I G  +   +G   +SL+    + G  D        N N+  VQSCN 
Sbjct: 271 HHLGKQLHAQLIINGLEYEDYDGRIAKSLIHMYSLFGAMDYAHYVFNKNLNSHAVQSCNH 330

Query: 241 MINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAW 300
           MINGY R G++E+A+ LFDT+P RD I+WTSMI GY  +G VS A YLF NMPD+D+VAW
Sbjct: 331 MINGYTRIGQVEKARELFDTIPARDNITWTSMIVGYFDIGNVSEACYLFENMPDKDSVAW 390

Query: 301 TAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMK 360
           T+MISGLVQNELF++AT   + M AHG PPL++T+++LFGAAGA A++D GRQ+H +LMK
Sbjct: 391 TSMISGLVQNELFLKATSFLLRMLAHGAPPLSSTYAILFGAAGAIAHLDFGRQLHNMLMK 450

Query: 361 TESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKV 420
           T S+ DLIL N LISMYAKCG I +AY+IF+NM+ RDL+SWN+M+MG +HH LANETLKV
Sbjct: 451 TLSDCDLILSNSLISMYAKCGEIHDAYSIFTNMIYRDLISWNTMIMGLAHHALANETLKV 510

Query: 421 FESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLG 480
           FE+ML+SGT PNSVTFLGILSACSHAGLVS+G +LF AM DVY IQPG EHY+SMINLLG
Sbjct: 511 FETMLQSGTRPNSVTFLGILSACSHAGLVSQGCKLFKAMRDVYAIQPGLEHYISMINLLG 570

Query: 481 RAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHV 540
           RAGK++EAEE +L LPFE +H IWGALLG CG  E NA+IA+HAA+RLLELDPLNAPAHV
Sbjct: 571 RAGKVREAEELILGLPFETNHAIWGALLGVCGVAEKNADIAQHAARRLLELDPLNAPAHV 630

Query: 541 VLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEILL 600
            LCNIYAA G+H+EE KLR +MGLKGVRKVPGCSW++ NG + +FLSGDK+  +  E+LL
Sbjct: 631 ALCNIYAACGKHIEEQKLRKEMGLKGVRKVPGCSWIVLNGNVCVFLSGDKLDPEADEMLL 690



 Score =  218 bits (556), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 153/478 (32%), Positives = 240/478 (50%), Gaps = 57/478 (11%)

Query: 46  NAMLSGFLQNGRLSEARRLFEEMPERN----VVSWTAMICGLADAGRVCEARKLFEEMPE 101
           ++ L   L   +L +AR L ++ PER+    +  WT+++   +  G + E+R LF+ MPE
Sbjct: 2   DSQLLCMLSQQKLQQARNLLDKFPERSRHSRIAHWTSLLTKYSRIGFIDESRVLFDIMPE 61

Query: 102 RNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEM 161
           RN+VS+N M+ G ++ G L+EAR +F  MP +NV+SW +M+ G  +   + EA  LF+EM
Sbjct: 62  RNIVSYNVMLSGYLQCGRLSEARGLFEEMPERNVVSWTSMLCGLADAGRICEARELFKEM 121

Query: 162 EERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFI 221
            ERNVV+W +M++G  +  ++EE   +F  +P KNVVSW AMI GFA NG  +E+ +LF 
Sbjct: 122 PERNVVSWNAMVAGLIKNEDLEEARRVFDEIPEKNVVSWNAMIKGFAENGKMEEARVLFE 181

Query: 222 EMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQ 281
           EM+       + NV +  +MI GY R G + EA   F  +P R+ +SWT+MI G+   G 
Sbjct: 182 EME-------DRNVITWTTMIAGYCRIGDVREAYCFFCRIPERNVVSWTAMISGFTWNGY 234

Query: 282 VSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGA 341
              A  LF  M  R  +A           E F+   Y    MR H               
Sbjct: 235 YGEALLLFLEMKRRSNIA--------PNGETFISLAYACAGMRFH--------------- 271

Query: 342 AGATANIDLGRQIHCVLMKTESE---SDLILENCLISMYAKCGVIDNAYNIFS-NMVSRD 397
                   LG+Q+H  L+    E    D  +   LI MY+  G +D A+ +F+ N+ S  
Sbjct: 272 -------HLGKQLHAQLIINGLEYEDYDGRIAKSLIHMYSLFGAMDYAHYVFNKNLNSHA 324

Query: 398 LVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFN 457
           + S N M+ G++  G   +  ++F+++       +++T+  ++      G VS    LF 
Sbjct: 325 VQSCNHMINGYTRIGQVEKARELFDTI----PARDNITWTSMIVGYFDIGNVSEACYLFE 380

Query: 458 AMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFE---PDHRIWGALLGACG 512
            M D   +      + SMI+ L +     +A  F+LR+      P    +  L GA G
Sbjct: 381 NMPDKDSVA-----WTSMISGLVQNELFLKATSFLLRMLAHGAPPLSSTYAILFGAAG 433


>gi|225437951|ref|XP_002269187.1| PREDICTED: pentatricopeptide repeat-containing protein At1g32415,
           mitochondrial-like [Vitis vinifera]
          Length = 743

 Score =  776 bits (2003), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 395/657 (60%), Positives = 478/657 (72%), Gaps = 68/657 (10%)

Query: 11  VVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPE 70
           VV  TS ++K+SK GFIDEA+ALF++MP+RNVV+YNAMLSG++Q GRLS+A R FEEMPE
Sbjct: 76  VVCWTSLLSKFSKNGFIDEARALFEIMPERNVVTYNAMLSGYVQCGRLSDACRFFEEMPE 135

Query: 71  RNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSM 130
           RNVVSWT+++CGLA+AGR+ EAR+LF  MPERNVVSWNSM+VGLIR+G+L EAR+VFN M
Sbjct: 136 RNVVSWTSLLCGLANAGRIGEARELFNVMPERNVVSWNSMLVGLIRSGQLEEARRVFNEM 195

Query: 131 PIKNVISWNAMIAGYVECCMMGEAIVLF-------------------------------E 159
           P+K+ +SWN MIAGY E   M EA VLF                               +
Sbjct: 196 PVKSQVSWNVMIAGYAEHSRMEEARVLFDGMGDRNVVTWTSMISGYCRAGNVQEGYCLFQ 255

Query: 160 EMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMP-----RKNVVSWTAMIGGFAWNGFHK 214
           +M ERNVV+WT+MI G+   G  +E   LF  M      + N  ++ ++    A  GF  
Sbjct: 256 KMPERNVVSWTAMIGGFAWNGFYKEALLLFLEMKGNYDMKPNDETFISLAYACAGIGFPH 315

Query: 215 ------------------------ESLLLFIEMKGICD--------NGNNCNVQSCNSMI 242
                                   +SL+    M G  D        N  + N QSCNSMI
Sbjct: 316 LGMQFHAHLIINCWDYDDYDGRLFKSLIHMYSMFGFMDFAWYIFFRNSMSYNTQSCNSMI 375

Query: 243 NGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTA 302
           NGYIR G+LE+AQ+LFDT+PVRD+ISWTSMI+GY +VGQ++ A YLF+NMPDRDAVAWT 
Sbjct: 376 NGYIRIGQLEKAQSLFDTIPVRDKISWTSMINGYFNVGQIAKACYLFNNMPDRDAVAWTV 435

Query: 303 MISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTE 362
           M+SG VQNELF EATYLF EMR  GV PLN+TFS+L GAAGA A +D GRQ HC+LMKT+
Sbjct: 436 MVSGHVQNELFAEATYLFSEMRVKGVSPLNSTFSILLGAAGAMAYLDQGRQFHCLLMKTQ 495

Query: 363 SESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFE 422
            E DLIL+N LISMYAKCG I +AY+IFS M+SRDL+SWNSM+MGFSHHGL +E LKVFE
Sbjct: 496 FEFDLILQNSLISMYAKCGEIGDAYSIFSKMISRDLISWNSMIMGFSHHGLTSEALKVFE 555

Query: 423 SMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRA 482
           +ML SGTHPNSVTFLGILSACSHAGL+++GWELF+AM DV+ IQP  EHYV M+NLLGRA
Sbjct: 556 AMLTSGTHPNSVTFLGILSACSHAGLLNQGWELFDAMSDVFAIQPQLEHYVCMVNLLGRA 615

Query: 483 GKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVL 542
           GK++EAEEF+ +LPFEPD  IWGALLG CGF   N  +A  AAKRLLELDPLNAPAHVVL
Sbjct: 616 GKVEEAEEFISKLPFEPDLTIWGALLGVCGFGMINTGVARRAAKRLLELDPLNAPAHVVL 675

Query: 543 CNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEIL 599
           CNI+A+ G+  EE +LR +MGLKGVRKVPGCSW++  G   +FLSGD+I  Q  E+L
Sbjct: 676 CNIHASIGQRAEEGQLRKEMGLKGVRKVPGCSWILLKGEPYVFLSGDRIHPQADEML 732



 Score =  182 bits (461), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 126/394 (31%), Positives = 195/394 (49%), Gaps = 51/394 (12%)

Query: 108 NSMVVGLIRNGELNEARKVFNSMP----IKNVISWNAMIAGYVECCMMGEAIVLFEEMEE 163
           +S ++  +    L EAR + + MP    +  V+ W ++++ + +   + EA  LFE M E
Sbjct: 45  DSQILECLSQQRLREARHMLDEMPNRGVLDRVVCWTSLLSKFSKNGFIDEARALFEIMPE 104

Query: 164 RNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEM 223
           RNVVT+ +M+SGY + G + +    F  MP +NVVSWT+++ G A  G   E+  LF  M
Sbjct: 105 RNVVTYNAMLSGYVQCGRLSDACRFFEEMPERNVVSWTSLLCGLANAGRIGEARELFNVM 164

Query: 224 KGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEIS--------------- 268
                     NV S NSM+ G IR G+LEEA+ +F+ +PV+ ++S               
Sbjct: 165 P-------ERNVVSWNSMLVGLIRSGQLEEARRVFNEMPVKSQVSWNVMIAGYAEHSRME 217

Query: 269 ----------------WTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNEL 312
                           WTSMI GY   G V   Y LF  MP+R+ V+WTAMI G   N  
Sbjct: 218 EARVLFDGMGDRNVVTWTSMISGYCRAGNVQEGYCLFQKMPERNVVSWTAMIGGFAWNGF 277

Query: 313 FVEATYLFMEMRA-HGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKT---ESESDLI 368
           + EA  LF+EM+  + + P + TF  L  A        LG Q H  L+       + D  
Sbjct: 278 YKEALLLFLEMKGNYDMKPNDETFISLAYACAGIGFPHLGMQFHAHLIINCWDYDDYDGR 337

Query: 369 LENCLISMYAKCGVIDNAYNI-FSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLES 427
           L   LI MY+  G +D A+ I F N +S +  S NSM+ G+   G     L+  +S+ ++
Sbjct: 338 LFKSLIHMYSMFGFMDFAWYIFFRNSMSYNTQSCNSMINGYIRIG----QLEKAQSLFDT 393

Query: 428 GTHPNSVTFLGILSACSHAGLVSRGWELFNAMFD 461
               + +++  +++   + G +++   LFN M D
Sbjct: 394 IPVRDKISWTSMINGYFNVGQIAKACYLFNNMPD 427


>gi|357482291|ref|XP_003611431.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512766|gb|AES94389.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 735

 Score =  688 bits (1776), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 349/664 (52%), Positives = 449/664 (67%), Gaps = 72/664 (10%)

Query: 9   SLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEM 68
           S VVH TS +T Y+K G++++A+ LF +MP RN+V+YNAMLS +LQ+G   +A+R F++M
Sbjct: 70  SRVVHWTSMLTNYAKHGYVEQARNLFDIMPHRNIVTYNAMLSAYLQSGMTRQAKRFFDDM 129

Query: 69  PERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFN 128
           PERNVVSWTAM+ G A  G + +ARK+F+EMPERNVVSWNSMVVGLIRNG+L EARKVF+
Sbjct: 130 PERNVVSWTAMLSGYAGLGWIDDARKVFDEMPERNVVSWNSMVVGLIRNGDLEEARKVFD 189

Query: 129 SMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRA--------- 179
             P KNV+SWNAMI GYVE   M +A  LF+++E RNV+TWTSMISGYCR          
Sbjct: 190 DTPDKNVVSWNAMIEGYVENGRMDDAKDLFDQIECRNVITWTSMISGYCRVGDVNEAFRL 249

Query: 180 ----------------------GEVEEGYCLFRRM-----PRKNVVSWTAMIGGFAWNGF 212
                                 G   E   LF  M      + N  ++ +++   A  GF
Sbjct: 250 FQIMPEKNVVSWTAMIGGFAWNGFYREALLLFLDMMTLSDAKPNEETFVSLVYACAGMGF 309

Query: 213 -------HKESLL--------------LFIEMKGICD-----------NGNNCNVQSCNS 240
                  H + +L                + M  +C            +  NC+ QS NS
Sbjct: 310 PCLGKQLHAQMILNRWKLDDYDCRLGRSLVRMYSVCGLMDSARSVFEGDMKNCDDQSFNS 369

Query: 241 MINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPD--RDAV 298
           MINGY++ G+L +AQ LFDTVP+R++I+WT MI GYLS GQV  A  LF +MPD  +D++
Sbjct: 370 MINGYVQAGQLHKAQELFDTVPIRNKIAWTCMISGYLSAGQVLKASNLFDDMPDSDKDSI 429

Query: 299 AWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVL 358
           AWT MI G VQNEL  EA  LF EM A G  P+N+T++VLFGA G+ A +DLG Q+H + 
Sbjct: 430 AWTLMIYGYVQNELIAEAINLFAEMMAQGASPINSTYAVLFGAVGSVAYLDLGWQLHAMQ 489

Query: 359 MKT--ESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANE 416
           +KT  E E D+ LEN LISMYAKCG I++AY IFSNM  RD +SWNSM+MG S HG ANE
Sbjct: 490 LKTIYEYEYDVYLENSLISMYAKCGEIEDAYRIFSNMNCRDKISWNSMIMGLSDHGRANE 549

Query: 417 TLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMI 476
            L ++E+MLE G +P++VTFLG+L+AC+HAG V +G ELF+ M + Y +QPG EHYVS+I
Sbjct: 550 ALNMYETMLEFGVYPDAVTFLGVLTACAHAGFVDKGCELFSVMLNDYALQPGLEHYVSII 609

Query: 477 NLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNA 536
           N+LGRAG++K+AEEFVLRLP EP+H IWGAL+G CG  + +A+IA  AA RLLELDPLNA
Sbjct: 610 NILGRAGRVKDAEEFVLRLPVEPNHTIWGALIGVCGLSKTDADIARRAATRLLELDPLNA 669

Query: 537 PAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVA 596
           P HV LCNIYAA+ RH+EE  LR +M +KGVRK PGCSW++  G +  F SGD++     
Sbjct: 670 PGHVTLCNIYAANDRHLEETSLRREMRMKGVRKAPGCSWILVKGKVHAFSSGDRLDPLAE 729

Query: 597 EILL 600
           E+LL
Sbjct: 730 EMLL 733


>gi|18398422|ref|NP_564401.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806407|sp|P0C7R0.1|PPR69_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g32415, mitochondrial; Flags: Precursor
 gi|332193363|gb|AEE31484.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 761

 Score =  640 bits (1651), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 330/664 (49%), Positives = 445/664 (67%), Gaps = 75/664 (11%)

Query: 11  VVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPE 70
           VV+ TS ++KY+K G++DEA+ LF++MP+RN+V+ NAML+G+++  R++EA  LF EMP 
Sbjct: 77  VVYWTSLLSKYAKTGYLDEARVLFEVMPERNIVTCNAMLTGYVKCRRMNEAWTLFREMP- 135

Query: 71  RNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSM 130
           +NVVSWT M+  L D GR  +A +LF+EMPERNVVSWN++V GLIRNG++ +A++VF++M
Sbjct: 136 KNVVSWTVMLTALCDDGRSEDAVELFDEMPERNVVSWNTLVTGLIRNGDMEKAKQVFDAM 195

Query: 131 PIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTS------------------- 171
           P ++V+SWNAMI GY+E   M EA +LF +M E+NVVTWTS                   
Sbjct: 196 PSRDVVSWNAMIKGYIENDGMEEAKLLFGDMSEKNVVTWTSMVYGYCRYGDVREAYRLFC 255

Query: 172 ------------MISGYCRAGEVEEGYCLFRRMPR---------KNVVSWTAMIGGFA-- 208
                       MISG+       E   LF  M +         + ++S     GG    
Sbjct: 256 EMPERNIVSWTAMISGFAWNELYREALMLFLEMKKDVDAVSPNGETLISLAYACGGLGVE 315

Query: 209 ----------------W-----NGFHKESLLLFIEMKGICDNGNNC-----NVQSCNSMI 242
                           W     +G   +SL+      G+  +  +      ++QSCN +I
Sbjct: 316 FRRLGEQLHAQVISNGWETVDHDGRLAKSLVHMYASSGLIASAQSLLNESFDLQSCNIII 375

Query: 243 NGYIRFGRLEEAQNLFDTVP-VRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWT 301
           N Y++ G LE A+ LF+ V  + D++SWTSMIDGYL  G VS A+ LF  + D+D V WT
Sbjct: 376 NRYLKNGDLERAETLFERVKSLHDKVSWTSMIDGYLEAGDVSRAFGLFQKLHDKDGVTWT 435

Query: 302 AMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKT 361
            MISGLVQNELF EA  L  +M   G+ PLN+T+SVL  +AGAT+N+D G+ IHCV+ KT
Sbjct: 436 VMISGLVQNELFAEAASLLSDMVRCGLKPLNSTYSVLLSSAGATSNLDQGKHIHCVIAKT 495

Query: 362 ES--ESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLK 419
            +  + DLIL+N L+SMYAKCG I++AY IF+ MV +D VSWNSM+MG SHHGLA++ L 
Sbjct: 496 TACYDPDLILQNSLVSMYAKCGAIEDAYEIFAKMVQKDTVSWNSMIMGLSHHGLADKALN 555

Query: 420 VFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLL 479
           +F+ ML+SG  PNSVTFLG+LSACSH+GL++RG ELF AM + Y IQPG +HY+SMI+LL
Sbjct: 556 LFKEMLDSGKKPNSVTFLGVLSACSHSGLITRGLELFKAMKETYSIQPGIDHYISMIDLL 615

Query: 480 GRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFC--EGNAE-IAEHAAKRLLELDPLNA 536
           GRAGK+KEAEEF+  LPF PDH ++GALLG CG    + +AE IAE AA RLLELDP+NA
Sbjct: 616 GRAGKLKEAEEFISALPFTPDHTVYGALLGLCGLNWRDKDAEGIAERAAMRLLELDPVNA 675

Query: 537 PAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVA 596
           P HV LCN+YA  GRH  E ++R +MG+KGV+K PGCSW++ NG   +FLSGDK  ++ A
Sbjct: 676 PGHVALCNVYAGLGRHDMEKEMRKEMGIKGVKKTPGCSWVVVNGRANVFLSGDKSASEAA 735

Query: 597 EILL 600
           +++L
Sbjct: 736 QMVL 739



 Score =  183 bits (464), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 137/442 (30%), Positives = 220/442 (49%), Gaps = 49/442 (11%)

Query: 109 SMVVGLIRNGELNEARKVFNSMP----IKNVISWNAMIAGYVECCMMGEAIVLFEEMEER 164
           ++++  +  G L  AR + + +P    I  V+ W ++++ Y +   + EA VLFE M ER
Sbjct: 47  ALILRRLSEGGLVHARHLLDKIPQRGSINRVVYWTSLLSKYAKTGYLDEARVLFEVMPER 106

Query: 165 NVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEM- 223
           N+VT  +M++GY +   + E + LFR MP KNVVSWT M+     +G  ++++ LF EM 
Sbjct: 107 NIVTCNAMLTGYVKCRRMNEAWTLFREMP-KNVVSWTVMLTALCDDGRSEDAVELFDEMP 165

Query: 224 -----------KGICDNGN------------NCNVQSCNSMINGYIRFGRLEEAQNLFDT 260
                       G+  NG+            + +V S N+MI GYI    +EEA+ LF  
Sbjct: 166 ERNVVSWNTLVTGLIRNGDMEKAKQVFDAMPSRDVVSWNAMIKGYIENDGMEEAKLLFGD 225

Query: 261 VPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLF 320
           +  ++ ++WTSM+ GY   G V  AY LF  MP+R+ V+WTAMISG   NEL+ EA  LF
Sbjct: 226 MSEKNVVTWTSMVYGYCRYGDVREAYRLFCEMPERNIVSWTAMISGFAWNELYREALMLF 285

Query: 321 MEMR--AHGVPPLNATF-SVLFGAAGATANI-DLGRQIHCVLMKTESES---DLILENCL 373
           +EM+     V P   T  S+ +   G       LG Q+H  ++    E+   D  L   L
Sbjct: 286 LEMKKDVDAVSPNGETLISLAYACGGLGVEFRRLGEQLHAQVISNGWETVDHDGRLAKSL 345

Query: 374 ISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNS 433
           + MYA  G+I +A ++ +   S DL S N ++  +  +G       +FE +    +  + 
Sbjct: 346 VHMYASSGLIASAQSLLNE--SFDLQSCNIIINRYLKNGDLERAETLFERV---KSLHDK 400

Query: 434 VTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFV- 492
           V++  ++     AG VSR + LF  + D   +      +  MI+ L +     EA   + 
Sbjct: 401 VSWTSMIDGYLEAGDVSRAFGLFQKLHDKDGVT-----WTVMISGLVQNELFAEAASLLS 455

Query: 493 --LRLPFEPDHRIWGALLGACG 512
             +R   +P +  +  LL + G
Sbjct: 456 DMVRCGLKPLNSTYSVLLSSAG 477


>gi|8920616|gb|AAF81338.1|AC007767_18 Contains similarity to a hypothetical protein F19I3.26 gi|7485810
           from Arabidopsis thaliana BAC F19I3 gb|AC004238. It
           contains a PPR repeat domain PF|01535. ESTs gb|AV539170,
           gb|AV551571, gb|AA597781, gb|AV544524, gb|AV531577 and
           gb|AV533492 come from this gene [Arabidopsis thaliana]
          Length = 864

 Score =  639 bits (1648), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 330/664 (49%), Positives = 445/664 (67%), Gaps = 75/664 (11%)

Query: 11  VVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPE 70
           VV+ TS ++KY+K G++DEA+ LF++MP+RN+V+ NAML+G+++  R++EA  LF EMP 
Sbjct: 180 VVYWTSLLSKYAKTGYLDEARVLFEVMPERNIVTCNAMLTGYVKCRRMNEAWTLFREMP- 238

Query: 71  RNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSM 130
           +NVVSWT M+  L D GR  +A +LF+EMPERNVVSWN++V GLIRNG++ +A++VF++M
Sbjct: 239 KNVVSWTVMLTALCDDGRSEDAVELFDEMPERNVVSWNTLVTGLIRNGDMEKAKQVFDAM 298

Query: 131 PIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTS------------------- 171
           P ++V+SWNAMI GY+E   M EA +LF +M E+NVVTWTS                   
Sbjct: 299 PSRDVVSWNAMIKGYIENDGMEEAKLLFGDMSEKNVVTWTSMVYGYCRYGDVREAYRLFC 358

Query: 172 ------------MISGYCRAGEVEEGYCLFRRMPR---------KNVVSWTAMIGGFA-- 208
                       MISG+       E   LF  M +         + ++S     GG    
Sbjct: 359 EMPERNIVSWTAMISGFAWNELYREALMLFLEMKKDVDAVSPNGETLISLAYACGGLGVE 418

Query: 209 ----------------W-----NGFHKESLLLFIEMKGICDNGNNC-----NVQSCNSMI 242
                           W     +G   +SL+      G+  +  +      ++QSCN +I
Sbjct: 419 FRRLGEQLHAQVISNGWETVDHDGRLAKSLVHMYASSGLIASAQSLLNESFDLQSCNIII 478

Query: 243 NGYIRFGRLEEAQNLFDTVP-VRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWT 301
           N Y++ G LE A+ LF+ V  + D++SWTSMIDGYL  G VS A+ LF  + D+D V WT
Sbjct: 479 NRYLKNGDLERAETLFERVKSLHDKVSWTSMIDGYLEAGDVSRAFGLFQKLHDKDGVTWT 538

Query: 302 AMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKT 361
            MISGLVQNELF EA  L  +M   G+ PLN+T+SVL  +AGAT+N+D G+ IHCV+ KT
Sbjct: 539 VMISGLVQNELFAEAASLLSDMVRCGLKPLNSTYSVLLSSAGATSNLDQGKHIHCVIAKT 598

Query: 362 ES--ESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLK 419
            +  + DLIL+N L+SMYAKCG I++AY IF+ MV +D VSWNSM+MG SHHGLA++ L 
Sbjct: 599 TACYDPDLILQNSLVSMYAKCGAIEDAYEIFAKMVQKDTVSWNSMIMGLSHHGLADKALN 658

Query: 420 VFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLL 479
           +F+ ML+SG  PNSVTFLG+LSACSH+GL++RG ELF AM + Y IQPG +HY+SMI+LL
Sbjct: 659 LFKEMLDSGKKPNSVTFLGVLSACSHSGLITRGLELFKAMKETYSIQPGIDHYISMIDLL 718

Query: 480 GRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFC--EGNAE-IAEHAAKRLLELDPLNA 536
           GRAGK+KEAEEF+  LPF PDH ++GALLG CG    + +AE IAE AA RLLELDP+NA
Sbjct: 719 GRAGKLKEAEEFISALPFTPDHTVYGALLGLCGLNWRDKDAEGIAERAAMRLLELDPVNA 778

Query: 537 PAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVA 596
           P HV LCN+YA  GRH  E ++R +MG+KGV+K PGCSW++ NG   +FLSGDK  ++ A
Sbjct: 779 PGHVALCNVYAGLGRHDMEKEMRKEMGIKGVKKTPGCSWVVVNGRANVFLSGDKSASEAA 838

Query: 597 EILL 600
           +++L
Sbjct: 839 QMVL 842



 Score =  181 bits (460), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 137/442 (30%), Positives = 220/442 (49%), Gaps = 49/442 (11%)

Query: 109 SMVVGLIRNGELNEARKVFNSMP----IKNVISWNAMIAGYVECCMMGEAIVLFEEMEER 164
           ++++  +  G L  AR + + +P    I  V+ W ++++ Y +   + EA VLFE M ER
Sbjct: 150 ALILRRLSEGGLVHARHLLDKIPQRGSINRVVYWTSLLSKYAKTGYLDEARVLFEVMPER 209

Query: 165 NVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEM- 223
           N+VT  +M++GY +   + E + LFR MP KNVVSWT M+     +G  ++++ LF EM 
Sbjct: 210 NIVTCNAMLTGYVKCRRMNEAWTLFREMP-KNVVSWTVMLTALCDDGRSEDAVELFDEMP 268

Query: 224 -----------KGICDNGN------------NCNVQSCNSMINGYIRFGRLEEAQNLFDT 260
                       G+  NG+            + +V S N+MI GYI    +EEA+ LF  
Sbjct: 269 ERNVVSWNTLVTGLIRNGDMEKAKQVFDAMPSRDVVSWNAMIKGYIENDGMEEAKLLFGD 328

Query: 261 VPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLF 320
           +  ++ ++WTSM+ GY   G V  AY LF  MP+R+ V+WTAMISG   NEL+ EA  LF
Sbjct: 329 MSEKNVVTWTSMVYGYCRYGDVREAYRLFCEMPERNIVSWTAMISGFAWNELYREALMLF 388

Query: 321 MEMR--AHGVPPLNATF-SVLFGAAGATANI-DLGRQIHCVLMKTESES---DLILENCL 373
           +EM+     V P   T  S+ +   G       LG Q+H  ++    E+   D  L   L
Sbjct: 389 LEMKKDVDAVSPNGETLISLAYACGGLGVEFRRLGEQLHAQVISNGWETVDHDGRLAKSL 448

Query: 374 ISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNS 433
           + MYA  G+I +A ++ +   S DL S N ++  +  +G       +FE +    +  + 
Sbjct: 449 VHMYASSGLIASAQSLLNE--SFDLQSCNIIINRYLKNGDLERAETLFERV---KSLHDK 503

Query: 434 VTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFV- 492
           V++  ++     AG VSR + LF  + D   +      +  MI+ L +     EA   + 
Sbjct: 504 VSWTSMIDGYLEAGDVSRAFGLFQKLHDKDGVT-----WTVMISGLVQNELFAEAASLLS 558

Query: 493 --LRLPFEPDHRIWGALLGACG 512
             +R   +P +  +  LL + G
Sbjct: 559 DMVRCGLKPLNSTYSVLLSSAG 580


>gi|297846216|ref|XP_002890989.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297336831|gb|EFH67248.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 792

 Score =  638 bits (1645), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 329/666 (49%), Positives = 441/666 (66%), Gaps = 75/666 (11%)

Query: 9   SLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEM 68
           S V++ TS +TKY+K G++DEA+ LF++MP+RN+V+ NAML+G+++  RL+EA  LF EM
Sbjct: 105 SRVIYCTSLLTKYAKAGYLDEARVLFEVMPERNIVTCNAMLTGYVKCRRLNEAWTLFREM 164

Query: 69  PERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFN 128
           P +NVVSWT M+  L D GR  +A +LF+EMPERNVVSWN++V GLIRNGE  +A++VF+
Sbjct: 165 P-KNVVSWTVMLTALCDDGRSDDAVELFDEMPERNVVSWNTLVTGLIRNGETEKAKQVFD 223

Query: 129 SMPIKNVISWNAMIAGYVECCMMGEAIVLFE----------------------------- 159
           +MP ++ +SWNAMI GY+E   M EA +LFE                             
Sbjct: 224 AMPSRDAVSWNAMIKGYIENGGMEEAKLLFENMSEKNVVTWTSMVYGYCRYGDVHEAYRL 283

Query: 160 --EMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPR---------KNVVSWTAMIGGFA 208
             EM ERNVV+WT+MISG+       E   LF  M +         + ++S     GG  
Sbjct: 284 FCEMPERNVVSWTAMISGFAWNEFYREALMLFLEMKKDVDAISPNGETLISLAYACGGLG 343

Query: 209 ------------------W-----NGFHKESLLLFIEMKGICDNGNNC-----NVQSCNS 240
                             W     +G   +SL+      G+  +  +      ++QSCN 
Sbjct: 344 VGFRRLGEQLHAQVISNGWESVDHDGRLAKSLVHMYASFGLIASAQSLLNESFDLQSCNI 403

Query: 241 MINGYIRFGRLEEAQNLFDTV-PVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVA 299
           +I+ Y++ G  E A+ LF  V  + D++SWTSMIDGYL  G VS A+ LF  + D+D V 
Sbjct: 404 IISAYLKNGDFERAETLFRRVESLHDKVSWTSMIDGYLDAGDVSRAFDLFQKLHDKDGVT 463

Query: 300 WTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLM 359
           WT MISGLVQNELF EA  L  +M   G+ PLN+T+SVL  +AGAT+N+D G+ +HCV+ 
Sbjct: 464 WTVMISGLVQNELFAEAASLLSDMVRCGLKPLNSTYSVLLSSAGATSNLDQGKHLHCVIA 523

Query: 360 KTES--ESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANET 417
           KT +  + DLIL+N L+SMYAKCG ID+AY IFS MV +D+VSWNS+++G SHHGLA++ 
Sbjct: 524 KTTACYDPDLILQNSLVSMYAKCGAIDDAYEIFSKMVRKDIVSWNSVIIGLSHHGLADKA 583

Query: 418 LKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMIN 477
           LK+F+ ML+SG  PNSVTFLG+LSACSH+GL+++G ELF AM + Y IQPG EHY+SMI+
Sbjct: 584 LKLFKEMLDSGMKPNSVTFLGVLSACSHSGLITKGLELFKAMKETYSIQPGVEHYISMID 643

Query: 478 LLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFC---EGNAEIAEHAAKRLLELDPL 534
           LLGRAGK+KEAEEF+  LPF PDH ++GALLG CG        A IAE AA RLLELDP+
Sbjct: 644 LLGRAGKLKEAEEFISALPFTPDHTVYGALLGLCGLNWRDRDAAGIAERAAMRLLELDPV 703

Query: 535 NAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQ 594
           NAP HV LCN+YA  GRH  E ++R +MG+KGV+K PGCSW++ NG   +FLSGDK  ++
Sbjct: 704 NAPGHVALCNMYAGLGRHEMEKEMRKEMGIKGVKKTPGCSWVVVNGRANVFLSGDKSASE 763

Query: 595 VAEILL 600
             +++L
Sbjct: 764 AGQMVL 769



 Score =  179 bits (453), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 137/442 (30%), Positives = 214/442 (48%), Gaps = 49/442 (11%)

Query: 109 SMVVGLIRNGELNEARKVFNSMP----IKNVISWNAMIAGYVECCMMGEAIVLFEEMEER 164
           ++++  +  G L  AR + + +P    I  VI   +++  Y +   + EA VLFE M ER
Sbjct: 77  ALILRRLSEGGLVHARHLLDKIPQRGSISRVIYCTSLLTKYAKAGYLDEARVLFEVMPER 136

Query: 165 NVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEM- 223
           N+VT  +M++GY +   + E + LFR MP KNVVSWT M+     +G   +++ LF EM 
Sbjct: 137 NIVTCNAMLTGYVKCRRLNEAWTLFREMP-KNVVSWTVMLTALCDDGRSDDAVELFDEMP 195

Query: 224 -----------KGICDNGNNCNVQ------------SCNSMINGYIRFGRLEEAQNLFDT 260
                       G+  NG     +            S N+MI GYI  G +EEA+ LF+ 
Sbjct: 196 ERNVVSWNTLVTGLIRNGETEKAKQVFDAMPSRDAVSWNAMIKGYIENGGMEEAKLLFEN 255

Query: 261 VPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLF 320
           +  ++ ++WTSM+ GY   G V  AY LF  MP+R+ V+WTAMISG   NE + EA  LF
Sbjct: 256 MSEKNVVTWTSMVYGYCRYGDVHEAYRLFCEMPERNVVSWTAMISGFAWNEFYREALMLF 315

Query: 321 MEMR--AHGVPPLNATFSVLFGAAG--ATANIDLGRQIHCVLMKTESES---DLILENCL 373
           +EM+     + P   T   L  A G        LG Q+H  ++    ES   D  L   L
Sbjct: 316 LEMKKDVDAISPNGETLISLAYACGGLGVGFRRLGEQLHAQVISNGWESVDHDGRLAKSL 375

Query: 374 ISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNS 433
           + MYA  G+I +A ++ +   S DL S N ++  +  +G       +F  +     H + 
Sbjct: 376 VHMYASFGLIASAQSLLNE--SFDLQSCNIIISAYLKNGDFERAETLFRRV--ESLH-DK 430

Query: 434 VTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFV- 492
           V++  ++     AG VSR ++LF  + D   +      +  MI+ L +     EA   + 
Sbjct: 431 VSWTSMIDGYLDAGDVSRAFDLFQKLHDKDGVT-----WTVMISGLVQNELFAEAASLLS 485

Query: 493 --LRLPFEPDHRIWGALLGACG 512
             +R   +P +  +  LL + G
Sbjct: 486 DMVRCGLKPLNSTYSVLLSSAG 507


>gi|356511265|ref|XP_003524347.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Glycine max]
          Length = 750

 Score =  483 bits (1243), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 246/621 (39%), Positives = 368/621 (59%), Gaps = 44/621 (7%)

Query: 5   NHPKSL-----VVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLS 59
           N+PK        V  T +I+ + + G  D A  +F  MP RN VSYNAM+SG+L+N + S
Sbjct: 22  NYPKPHFEDPHTVKCTKAISTHMRNGHCDLALCVFDAMPLRNSVSYNAMISGYLRNAKFS 81

Query: 60  EARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGE 119
            AR LF++MP +++ SW  M+ G A   R+ +AR LF+ MPE++VVSWN+M+ G +R+G 
Sbjct: 82  LARDLFDKMPHKDLFSWNLMLTGYARNRRLRDARMLFDSMPEKDVVSWNAMLSGYVRSGH 141

Query: 120 LNEARKVFNSMPIKNVISWNAMIA-------------------------------GYVEC 148
           ++EAR VF+ MP KN ISWN ++A                               GYV+ 
Sbjct: 142 VDEARDVFDRMPHKNSISWNGLLAAYVRSGRLEEARRLFESKSDWELISCNCLMGGYVKR 201

Query: 149 CMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFA 208
            M+G+A  LF+++  R++++W +MISGY + G++ +   LF   P ++V +WTAM+  + 
Sbjct: 202 NMLGDARQLFDQIPVRDLISWNTMISGYAQDGDLSQARRLFEESPVRDVFTWTAMVYAYV 261

Query: 209 WNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEIS 268
            +G   E+  +F EM             S N MI GY ++ R++  + LF+ +P  +  S
Sbjct: 262 QDGMLDEARRVFDEMP-------QKREMSYNVMIAGYAQYKRMDMGRELFEEMPFPNIGS 314

Query: 269 WTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGV 328
           W  MI GY   G ++ A  LF  MP RD+V+W A+I+G  QN L+ EA  + +EM+  G 
Sbjct: 315 WNIMISGYCQNGDLAQARNLFDMMPQRDSVSWAAIIAGYAQNGLYEEAMNMLVEMKRDGE 374

Query: 329 PPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYN 388
               +TF     A    A ++LG+Q+H  +++T  E   ++ N L+ MY KCG ID AY+
Sbjct: 375 SLNRSTFCCALSACADIAALELGKQVHGQVVRTGYEKGCLVGNALVGMYCKCGCIDEAYD 434

Query: 389 IFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGL 448
           +F  +  +D+VSWN+M+ G++ HG   + L VFESM+ +G  P+ +T +G+LSACSH GL
Sbjct: 435 VFQGVQHKDIVSWNTMLAGYARHGFGRQALTVFESMITAGVKPDEITMVGVLSACSHTGL 494

Query: 449 VSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALL 508
             RG E F++M   Y I P  +HY  MI+LLGRAG ++EA+  +  +PFEPD   WGALL
Sbjct: 495 TDRGTEYFHSMNKDYGITPNSKHYACMIDLLGRAGCLEEAQNLIRNMPFEPDAATWGALL 554

Query: 509 GACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVR 568
           GA     GN E+ E AA+ + +++P N+  +V+L N+YAASGR V+  K+R+ M   GV+
Sbjct: 555 GASRI-HGNMELGEQAAEMVFKMEPHNSGMYVLLSNLYAASGRWVDVSKMRLKMRQIGVQ 613

Query: 569 KVPGCSWLMRNGGIQMFLSGD 589
           K PG SW+     I  F  GD
Sbjct: 614 KTPGYSWVEVQNKIHTFTVGD 634


>gi|359491499|ref|XP_003634283.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Vitis vinifera]
          Length = 766

 Score =  483 bits (1242), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 252/636 (39%), Positives = 373/636 (58%), Gaps = 47/636 (7%)

Query: 2   SERNHPKSL--------VVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFL 53
           S RN PK+         +V    +IT + + G  D A  LF  MP+R+ +S+NAM+SG L
Sbjct: 32  STRNQPKTTSSLATDADIVKWNIAITNHMRNGQCDSALRLFNSMPRRSSISWNAMISGCL 91

Query: 54  QNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVG 113
            N +   AR+LFE+MP R++VSW  MI G      +  AR LF++MPER+VVSWN+M+ G
Sbjct: 92  SNDKFYLARQLFEKMPTRDLVSWNVMISGCVRYRNLRAARLLFDQMPERDVVSWNAMLSG 151

Query: 114 LIRNGELNEARKVFNSMPIKNVISWNAMIAGYVEC----------------------CMM 151
             +NG + EA+++F+ MP KN ISWN M+A YV+                       CMM
Sbjct: 152 YAQNGYVKEAKEIFDEMPCKNSISWNGMLAAYVQNGRIEDARRLFESKADWELISWNCMM 211

Query: 152 G---------EAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTA 202
           G         +A  +F+ M ER+ V+W +MISGY + GE+ E   LF   P ++V +WTA
Sbjct: 212 GGYVKRNRLVDARGIFDRMPERDEVSWNTMISGYAQNGELLEAQRLFEESPVRDVFTWTA 271

Query: 203 MIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVP 262
           M+ G+  NG   E+  +F       D     N  S N++I GY++  R+++A+ LF+ +P
Sbjct: 272 MVSGYVQNGMLDEARRVF-------DGMPEKNSVSWNAIIAGYVQCKRMDQARELFEAMP 324

Query: 263 VRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFME 322
            ++  SW +MI GY   G ++ A   F  MP RD+++W A+I+G  Q+    EA +LF+E
Sbjct: 325 CQNVSSWNTMITGYAQNGDIAQARNFFDRMPQRDSISWAAIIAGYAQSGYGEEALHLFVE 384

Query: 323 MRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGV 382
           M+  G     +TF+         A ++LG+Q+H  ++K   ES   + N L+ MY KCG 
Sbjct: 385 MKRDGERLNRSTFTSTLSTCAEIAALELGKQVHGRVVKAGLESGCYVGNALLVMYCKCGN 444

Query: 383 IDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSA 442
           ID+AY +F  +  +++VSWN+M+ G++ HG   E L +FESM ++G  P+ VT +G+LSA
Sbjct: 445 IDDAYIVFEGIEEKEVVSWNTMIAGYARHGFGKEALMLFESMKKTGILPDDVTMVGVLSA 504

Query: 443 CSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHR 502
           CSH GLV +G E F +M   Y I    +HY  MI+LLGRAG++ +A+  +  +PFEPD  
Sbjct: 505 CSHTGLVDKGTEYFYSMTQDYGITANSKHYTCMIDLLGRAGRLDDAQNLMKNMPFEPDAA 564

Query: 503 IWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDM 562
            WGALLGA     GN E+ E AAK + E++P N+  +V+L N+YAASGR  +  ++R+ M
Sbjct: 565 TWGALLGASRI-HGNTELGEKAAKMIFEMEPDNSGMYVLLSNLYAASGRWGDVGRMRLRM 623

Query: 563 GLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
             +GV+KVPG SW+     I  F  GD +  +   I
Sbjct: 624 RDRGVKKVPGYSWVEVQNKIHTFTVGDSVHPERDRI 659


>gi|356511263|ref|XP_003524346.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Glycine max]
          Length = 763

 Score =  479 bits (1233), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 237/583 (40%), Positives = 359/583 (61%), Gaps = 8/583 (1%)

Query: 7   PKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFE 66
           P+   V   + I+ Y +      A+ LF  MP+R++ S+N ML+G+++N RL EA +LF+
Sbjct: 73  PRRSSVSYNAMISGYLRNAKFSLARDLFDKMPERDLFSWNVMLTGYVRNRRLGEAHKLFD 132

Query: 67  EMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKV 126
            MP+++VVSW AM+ G A  G V EAR++F +MP RN +SWN ++   + NG L EAR++
Sbjct: 133 LMPKKDVVSWNAMLSGYAQNGFVDEAREVFNKMPHRNSISWNGLLAAYVHNGRLKEARRL 192

Query: 127 FNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGY 186
           F S     +ISWN ++ GYV+  M+G+A  LF+ M  R+V++W +MISGY + G++ +  
Sbjct: 193 FESQSNWELISWNCLMGGYVKRNMLGDARQLFDRMPVRDVISWNTMISGYAQVGDLSQAK 252

Query: 187 CLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYI 246
            LF   P ++V +WTAM+ G+  NG   E+   F EM          N  S N+M+ GY+
Sbjct: 253 RLFNESPIRDVFTWTAMVSGYVQNGMVDEARKYFDEMPVK-------NEISYNAMLAGYV 305

Query: 247 RFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISG 306
           ++ ++  A  LF+ +P R+  SW +MI GY   G ++ A  LF  MP RD V+W A+ISG
Sbjct: 306 QYKKMVIAGELFEAMPCRNISSWNTMITGYGQNGGIAQARKLFDMMPQRDCVSWAAIISG 365

Query: 307 LVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESD 366
             QN  + EA  +F+EM+  G     +TFS         A ++LG+Q+H  ++K   E+ 
Sbjct: 366 YAQNGHYEEALNMFVEMKRDGESSNRSTFSCALSTCADIAALELGKQVHGQVVKAGFETG 425

Query: 367 LILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLE 426
             + N L+ MY KCG  D A ++F  +  +D+VSWN+M+ G++ HG   + L +FESM +
Sbjct: 426 CFVGNALLGMYFKCGSTDEANDVFEGIEEKDVVSWNTMIAGYARHGFGRQALVLFESMKK 485

Query: 427 SGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIK 486
           +G  P+ +T +G+LSACSH+GL+ RG E F +M   Y ++P  +HY  MI+LLGRAG+++
Sbjct: 486 AGVKPDEITMVGVLSACSHSGLIDRGTEYFYSMDRDYNVKPTSKHYTCMIDLLGRAGRLE 545

Query: 487 EAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIY 546
           EAE  +  +PF+P    WGALLGA     GN E+ E AA+ + +++P N+  +V+L N+Y
Sbjct: 546 EAENLMRNMPFDPGAASWGALLGASRI-HGNTELGEKAAEMVFKMEPQNSGMYVLLSNLY 604

Query: 547 AASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGD 589
           AASGR V+  K+R  M   GV+KV G SW+     I  F  GD
Sbjct: 605 AASGRWVDVGKMRSKMREAGVQKVTGYSWVEVQNKIHTFSVGD 647



 Score =  138 bits (347), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 100/351 (28%), Positives = 163/351 (46%), Gaps = 29/351 (8%)

Query: 160 EMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLL 219
           + ++ ++VTW   IS + R G  +    +F  MPR++ VS+ AMI G+  N     +  L
Sbjct: 40  KFKDPDIVTWNKAISSHMRNGHCDSALRVFNSMPRRSSVSYNAMISGYLRNAKFSLARDL 99

Query: 220 FIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSV 279
           F +M          ++ S N M+ GY+R  RL EA  LFD +P +D +SW +M+ GY   
Sbjct: 100 FDKMP-------ERDLFSWNVMLTGYVRNRRLGEAHKLFDLMPKKDVVSWNAMLSGYAQN 152

Query: 280 GQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLF 339
           G V  A  +F+ MP R++++W  +++  V N    EA  LF       +   N     L 
Sbjct: 153 GFVDEAREVFNKMPHRNSISWNGLLAAYVHNGRLKEARRLFESQSNWELISWNC----LM 208

Query: 340 GAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLV 399
           G       +   RQ    L       D+I  N +IS YA+ G +  A  +F+    RD+ 
Sbjct: 209 GGYVKRNMLGDARQ----LFDRMPVRDVISWNTMISGYAQVGDLSQAKRLFNESPIRDVF 264

Query: 400 SWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAM 459
           +W +MV G+  +G+ +E  K F+ M       N +++  +L+       +    ELF AM
Sbjct: 265 TWTAMVSGYVQNGMVDEARKYFDEM----PVKNEISYNAMLAGYVQYKKMVIAGELFEAM 320

Query: 460 FDVYKIQP--GPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALL 508
                  P      + +MI   G+ G I +A +    +P + D   W A++
Sbjct: 321 -------PCRNISSWNTMITGYGQNGGIAQARKLFDMMP-QRDCVSWAAII 363


>gi|449497589|ref|XP_004160443.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Cucumis sativus]
          Length = 776

 Score =  477 bits (1228), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 234/579 (40%), Positives = 357/579 (61%), Gaps = 9/579 (1%)

Query: 11  VVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPE 70
            V   + I+ Y      D A+ +F+ MP R+++S+N MLSG+++NG LS AR LF +MPE
Sbjct: 91  TVTYNAMISGYLSNNKFDCARKVFEKMPDRDLISWNVMLSGYVKNGNLSAARALFNQMPE 150

Query: 71  RNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSM 130
           ++VVSW AM+ G A  G V EARK+F++M  +N +SWN ++   ++NG + +AR++F+S 
Sbjct: 151 KDVVSWNAMLSGFAQNGFVEEARKIFDQMLVKNEISWNGLLSAYVQNGRIEDARRLFDSK 210

Query: 131 PIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFR 190
               ++SWN ++ GYV    + +A  LF+ M  R+ ++W  MI+GY + G + E   LF 
Sbjct: 211 MDWEIVSWNCLMGGYVRKKRLDDARSLFDRMPVRDKISWNIMITGYAQNGLLSEARRLFE 270

Query: 191 RMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGR 250
            +P ++V +WTAM+ GF  NG   E+  +F EM          N  S N+MI GY++  +
Sbjct: 271 ELPIRDVFAWTAMVSGFVQNGMLDEATRIFEEMP-------EKNEVSWNAMIAGYVQSQQ 323

Query: 251 LEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQN 310
           +E+A+ LFD +P R+  SW +M+ GY   G +  A  LF  MP RD ++W AMISG  Q+
Sbjct: 324 IEKARELFDQMPSRNTSSWNTMVTGYAQCGNIDQAKILFDEMPQRDCISWAAMISGYAQS 383

Query: 311 ELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILE 370
               EA +LF++M+  G     +  +    +    A ++LG+Q+H  L+K   ++  I  
Sbjct: 384 GQSEEALHLFIKMKRDGGILNRSALACALSSCAEIAALELGKQLHGRLVKAGFQTGYIAG 443

Query: 371 NCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTH 430
           N L++MY KCG I+ A+++F ++  +D+VSWN+M+ G++ HG   E L +FESM +    
Sbjct: 444 NALLAMYGKCGSIEEAFDVFEDITEKDIVSWNTMIAGYARHGFGKEALALFESM-KMTIK 502

Query: 431 PNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEE 490
           P+ VT +G+LSACSH GLV +G E FN+M+  Y I    +HY  MI+LLGRAG++ EA  
Sbjct: 503 PDDVTLVGVLSACSHTGLVDKGMEYFNSMYQNYGITANAKHYTCMIDLLGRAGRLDEALN 562

Query: 491 FVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASG 550
            +  +PF PD   WGALLGA     G+ E+ E AA+++ E++P N+  +V+L N+YAASG
Sbjct: 563 LMKSMPFYPDAATWGALLGASRI-HGDTELGEKAAEKVFEMEPDNSGMYVLLSNLYAASG 621

Query: 551 RHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGD 589
           R  E  ++R  M  KGV+KVPG SW+       +F  GD
Sbjct: 622 RWREVREMRSKMRDKGVKKVPGYSWVEIQNKTHIFTVGD 660



 Score =  243 bits (621), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 145/460 (31%), Positives = 241/460 (52%), Gaps = 47/460 (10%)

Query: 7   PKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARR--- 63
           P+  VV   + ++ +++ GF++EA+ +F  M  +N +S+N +LS ++QNGR+ +ARR   
Sbjct: 149 PEKDVVSWNAMLSGFAQNGFVEEARKIFDQMLVKNEISWNGLLSAYVQNGRIEDARRLFD 208

Query: 64  ----------------------------LFEEMPERNVVSWTAMICGLADAGRVCEARKL 95
                                       LF+ MP R+ +SW  MI G A  G + EAR+L
Sbjct: 209 SKMDWEIVSWNCLMGGYVRKKRLDDARSLFDRMPVRDKISWNIMITGYAQNGLLSEARRL 268

Query: 96  FEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAI 155
           FEE+P R+V +W +MV G ++NG L+EA ++F  MP KN +SWNAMIAGYV+   + +A 
Sbjct: 269 FEELPIRDVFAWTAMVSGFVQNGMLDEATRIFEEMPEKNEVSWNAMIAGYVQSQQIEKAR 328

Query: 156 VLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKE 215
            LF++M  RN  +W +M++GY + G +++   LF  MP+++ +SW AMI G+A +G  +E
Sbjct: 329 ELFDQMPSRNTSSWNTMVTGYAQCGNIDQAKILFDEMPQRDCISWAAMISGYAQSGQSEE 388

Query: 216 SLLLFIEMK---GICDNGN-NCNVQSCNSMIN---GYIRFGRLEEAQNLFDTVPVRDEIS 268
           +L LFI+MK   GI +     C + SC  +     G    GRL +A   F T      I+
Sbjct: 389 ALHLFIKMKRDGGILNRSALACALSSCAEIAALELGKQLHGRLVKAG--FQT----GYIA 442

Query: 269 WTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGV 328
             +++  Y   G +  A+ +F ++ ++D V+W  MI+G  ++    EA  LF  M+   +
Sbjct: 443 GNALLAMYGKCGSIEEAFDVFEDITEKDIVSWNTMIAGYARHGFGKEALALFESMKM-TI 501

Query: 329 PPLNATFSVLFGAAGATANIDLGRQIHCVLMKTES-ESDLILENCLISMYAKCGVIDNAY 387
            P + T   +  A   T  +D G +    + +     ++     C+I +  + G +D A 
Sbjct: 502 KPDDVTLVGVLSACSHTGLVDKGMEYFNSMYQNYGITANAKHYTCMIDLLGRAGRLDEAL 561

Query: 388 NIFSNM-VSRDLVSWNSMVMGFSHHGLANETLKVFESMLE 426
           N+  +M    D  +W +++     HG      K  E + E
Sbjct: 562 NLMKSMPFYPDAATWGALLGASRIHGDTELGEKAAEKVFE 601



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 93/305 (30%), Positives = 157/305 (51%), Gaps = 20/305 (6%)

Query: 7   PKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFE 66
           P+   V   + I  Y +   I++A+ LF  MP RN  S+N M++G+ Q G + +A+ LF+
Sbjct: 304 PEKNEVSWNAMIAGYVQSQQIEKARELFDQMPSRNTSSWNTMVTGYAQCGNIDQAKILFD 363

Query: 67  EMPERNVVSWTAMICGLADAGRVCEARKLFEEMP-ERNVVSWNSMVVGLIRNGELN--EA 123
           EMP+R+ +SW AMI G A +G+  EA  LF +M  +  +++ +++   L    E+   E 
Sbjct: 364 EMPQRDCISWAAMISGYAQSGQSEEALHLFIKMKRDGGILNRSALACALSSCAEIAALEL 423

Query: 124 RKVFNSMPIK-----NVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCR 178
            K  +   +K       I+ NA++A Y +C  + EA  +FE++ E+++V+W +MI+GY R
Sbjct: 424 GKQLHGRLVKAGFQTGYIAGNALLAMYGKCGSIEEAFDVFEDITEKDIVSWNTMIAGYAR 483

Query: 179 AGEVEEGYCLFRRMP---RKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNV 235
            G  +E   LF  M    + + V+   ++   +  G   + +  F  M    + G   N 
Sbjct: 484 HGFGKEALALFESMKMTIKPDDVTLVGVLSACSHTGLVDKGMEYFNSM--YQNYGITANA 541

Query: 236 QSCNSMINGYIRFGRLEEAQNLFDTVPVR-DEISW-----TSMIDGYLSVGQVSNAYYLF 289
           +    MI+   R GRL+EA NL  ++P   D  +W      S I G   +G+ + A  +F
Sbjct: 542 KHYTCMIDLLGRAGRLDEALNLMKSMPFYPDAATWGALLGASRIHGDTELGEKA-AEKVF 600

Query: 290 HNMPD 294
              PD
Sbjct: 601 EMEPD 605



 Score = 42.7 bits (99), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 39/151 (25%), Positives = 73/151 (48%), Gaps = 18/151 (11%)

Query: 364 ESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFES 423
           +SD++  N  IS Y + G  ++A ++F+ M  R  V++N+M+ G+  +   +   KVFE 
Sbjct: 57  DSDIVKWNRKISAYMRKGQCESALSVFNGMRRRSTVTYNAMISGYLSNNKFDCARKVFEK 116

Query: 424 MLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYV----SMINLL 479
           M +     + +++  +LS     G +S    LFN M         PE  V    +M++  
Sbjct: 117 MPDR----DLISWNVMLSGYVKNGNLSAARALFNQM---------PEKDVVSWNAMLSGF 163

Query: 480 GRAGKIKEAEEFVLRLPFEPDHRIWGALLGA 510
            + G ++EA +   ++  + +   W  LL A
Sbjct: 164 AQNGFVEEARKIFDQMLVKNEIS-WNGLLSA 193


>gi|449439555|ref|XP_004137551.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Cucumis sativus]
          Length = 776

 Score =  476 bits (1225), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 233/579 (40%), Positives = 356/579 (61%), Gaps = 9/579 (1%)

Query: 11  VVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPE 70
            V   + I+ Y      D A+ +F+ MP R+++S+N MLSG+++NG LS AR LF +MPE
Sbjct: 91  TVTYNAMISGYLSNNKFDCARKVFEKMPDRDLISWNVMLSGYVKNGNLSAARALFNQMPE 150

Query: 71  RNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSM 130
           ++VVSW AM+ G A  G V EARK+F++M  +N +SWN ++   ++NG + +AR++F+S 
Sbjct: 151 KDVVSWNAMLSGFAQNGFVEEARKIFDQMLVKNEISWNGLLSAYVQNGRIEDARRLFDSK 210

Query: 131 PIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFR 190
               ++SWN ++ GYV    + +A  LF+ M  R+ ++W  MI+GY + G + E   LF 
Sbjct: 211 MDWEIVSWNCLMGGYVRKKRLDDARSLFDRMPVRDKISWNIMITGYAQNGLLSEARRLFE 270

Query: 191 RMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGR 250
            +P ++V +WTAM+ GF  NG   E+  +F EM          N  S N+MI GY++  +
Sbjct: 271 ELPIRDVFAWTAMVSGFVQNGMLDEATRIFEEMP-------EKNEVSWNAMIAGYVQSQQ 323

Query: 251 LEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQN 310
           +E+A+ LFD +P R+  SW +M+ GY   G +  A  LF  MP RD ++W AMISG  Q+
Sbjct: 324 IEKARELFDQMPSRNTSSWNTMVTGYAQCGNIDQAKILFDEMPQRDCISWAAMISGYAQS 383

Query: 311 ELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILE 370
               EA +LF++M+  G     +  +    +    A ++LG+Q+H  L+K   ++  I  
Sbjct: 384 GQSEEALHLFIKMKRDGGILNRSALACALSSCAEIAALELGKQLHGRLVKAGFQTGYIAG 443

Query: 371 NCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTH 430
           N L++MY KCG I+ A+++F ++  +D+VSWN+M+ G++ HG   E L +FESM +    
Sbjct: 444 NALLAMYGKCGSIEEAFDVFEDITEKDIVSWNTMIAGYARHGFGKEALALFESM-KMTIK 502

Query: 431 PNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEE 490
           P+ VT +G+LSACSH G V +G E FN+M+  Y I    +HY  MI+LLGRAG++ EA  
Sbjct: 503 PDDVTLVGVLSACSHTGFVDKGMEYFNSMYQNYGITANAKHYTCMIDLLGRAGRLDEALN 562

Query: 491 FVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASG 550
            +  +PF PD   WGALLGA     G+ E+ E AA+++ E++P N+  +V+L N+YAASG
Sbjct: 563 LMKSMPFYPDAATWGALLGASRI-HGDTELGEKAAEKVFEMEPDNSGMYVLLSNLYAASG 621

Query: 551 RHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGD 589
           R  E  ++R  M  KGV+KVPG SW+       +F  GD
Sbjct: 622 RWREVREMRSKMRDKGVKKVPGYSWVEIQNKTHIFTVGD 660



 Score =  244 bits (622), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 145/460 (31%), Positives = 241/460 (52%), Gaps = 47/460 (10%)

Query: 7   PKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARR--- 63
           P+  VV   + ++ +++ GF++EA+ +F  M  +N +S+N +LS ++QNGR+ +ARR   
Sbjct: 149 PEKDVVSWNAMLSGFAQNGFVEEARKIFDQMLVKNEISWNGLLSAYVQNGRIEDARRLFD 208

Query: 64  ----------------------------LFEEMPERNVVSWTAMICGLADAGRVCEARKL 95
                                       LF+ MP R+ +SW  MI G A  G + EAR+L
Sbjct: 209 SKMDWEIVSWNCLMGGYVRKKRLDDARSLFDRMPVRDKISWNIMITGYAQNGLLSEARRL 268

Query: 96  FEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAI 155
           FEE+P R+V +W +MV G ++NG L+EA ++F  MP KN +SWNAMIAGYV+   + +A 
Sbjct: 269 FEELPIRDVFAWTAMVSGFVQNGMLDEATRIFEEMPEKNEVSWNAMIAGYVQSQQIEKAR 328

Query: 156 VLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKE 215
            LF++M  RN  +W +M++GY + G +++   LF  MP+++ +SW AMI G+A +G  +E
Sbjct: 329 ELFDQMPSRNTSSWNTMVTGYAQCGNIDQAKILFDEMPQRDCISWAAMISGYAQSGQSEE 388

Query: 216 SLLLFIEMK---GICDNGN-NCNVQSCNSMIN---GYIRFGRLEEAQNLFDTVPVRDEIS 268
           +L LFI+MK   GI +     C + SC  +     G    GRL +A   F T      I+
Sbjct: 389 ALHLFIKMKRDGGILNRSALACALSSCAEIAALELGKQLHGRLVKAG--FQT----GYIA 442

Query: 269 WTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGV 328
             +++  Y   G +  A+ +F ++ ++D V+W  MI+G  ++    EA  LF  M+   +
Sbjct: 443 GNALLAMYGKCGSIEEAFDVFEDITEKDIVSWNTMIAGYARHGFGKEALALFESMKM-TI 501

Query: 329 PPLNATFSVLFGAAGATANIDLGRQIHCVLMKTES-ESDLILENCLISMYAKCGVIDNAY 387
            P + T   +  A   T  +D G +    + +     ++     C+I +  + G +D A 
Sbjct: 502 KPDDVTLVGVLSACSHTGFVDKGMEYFNSMYQNYGITANAKHYTCMIDLLGRAGRLDEAL 561

Query: 388 NIFSNM-VSRDLVSWNSMVMGFSHHGLANETLKVFESMLE 426
           N+  +M    D  +W +++     HG      K  E + E
Sbjct: 562 NLMKSMPFYPDAATWGALLGASRIHGDTELGEKAAEKVFE 601



 Score =  132 bits (331), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 94/305 (30%), Positives = 158/305 (51%), Gaps = 20/305 (6%)

Query: 7   PKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFE 66
           P+   V   + I  Y +   I++A+ LF  MP RN  S+N M++G+ Q G + +A+ LF+
Sbjct: 304 PEKNEVSWNAMIAGYVQSQQIEKARELFDQMPSRNTSSWNTMVTGYAQCGNIDQAKILFD 363

Query: 67  EMPERNVVSWTAMICGLADAGRVCEARKLFEEMP-ERNVVSWNSMVVGLIRNGELN--EA 123
           EMP+R+ +SW AMI G A +G+  EA  LF +M  +  +++ +++   L    E+   E 
Sbjct: 364 EMPQRDCISWAAMISGYAQSGQSEEALHLFIKMKRDGGILNRSALACALSSCAEIAALEL 423

Query: 124 RKVFNSMPIK-----NVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCR 178
            K  +   +K       I+ NA++A Y +C  + EA  +FE++ E+++V+W +MI+GY R
Sbjct: 424 GKQLHGRLVKAGFQTGYIAGNALLAMYGKCGSIEEAFDVFEDITEKDIVSWNTMIAGYAR 483

Query: 179 AGEVEEGYCLFRRMP---RKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNV 235
            G  +E   LF  M    + + V+   ++   +  GF  + +  F  M    + G   N 
Sbjct: 484 HGFGKEALALFESMKMTIKPDDVTLVGVLSACSHTGFVDKGMEYFNSM--YQNYGITANA 541

Query: 236 QSCNSMINGYIRFGRLEEAQNLFDTVPVR-DEISW-----TSMIDGYLSVGQVSNAYYLF 289
           +    MI+   R GRL+EA NL  ++P   D  +W      S I G   +G+ + A  +F
Sbjct: 542 KHYTCMIDLLGRAGRLDEALNLMKSMPFYPDAATWGALLGASRIHGDTELGEKA-AEKVF 600

Query: 290 HNMPD 294
              PD
Sbjct: 601 EMEPD 605



 Score = 42.7 bits (99), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 39/151 (25%), Positives = 73/151 (48%), Gaps = 18/151 (11%)

Query: 364 ESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFES 423
           +SD++  N  IS Y + G  ++A ++F+ M  R  V++N+M+ G+  +   +   KVFE 
Sbjct: 57  DSDIVKWNRKISAYMRKGQCESALSVFNGMRRRSTVTYNAMISGYLSNNKFDCARKVFEK 116

Query: 424 MLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYV----SMINLL 479
           M +     + +++  +LS     G +S    LFN M         PE  V    +M++  
Sbjct: 117 MPDR----DLISWNVMLSGYVKNGNLSAARALFNQM---------PEKDVVSWNAMLSGF 163

Query: 480 GRAGKIKEAEEFVLRLPFEPDHRIWGALLGA 510
            + G ++EA +   ++  + +   W  LL A
Sbjct: 164 AQNGFVEEARKIFDQMLVKNEIS-WNGLLSA 193


>gi|92870988|gb|ABE80149.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 766

 Score =  474 bits (1221), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 239/610 (39%), Positives = 365/610 (59%), Gaps = 39/610 (6%)

Query: 11  VVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPE 70
           ++    +I+ + + G  D A  +F  MP+R+ VSYNAM+SG+L+N + + AR LF++MPE
Sbjct: 49  ILKWNKAISTHMRNGHCDSALHVFNTMPRRSSVSYNAMISGYLRNSKFNLARNLFDQMPE 108

Query: 71  RNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSM 130
           R++ SW  M+ G     R+ +AR+LF+ MPE++VVSWNS++ G  +NG ++EAR+VF++M
Sbjct: 109 RDLFSWNVMLTGYVRNCRLGDARRLFDLMPEKDVVSWNSLLSGYAQNGYVDEAREVFDNM 168

Query: 131 PIKNVISWNAMIAGYV------ECCMM-------------------------GEAIVLFE 159
           P KN ISWN ++A YV      E C++                         G+A  LF+
Sbjct: 169 PEKNSISWNGLLAAYVHNGRIEEACLLFESKSDWDLISWNCLMGGFVRKKKLGDARWLFD 228

Query: 160 EMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLL 219
           +M  R+ ++W +MISGY + G + +   LF   P ++V +WTAM+ G+  NG   E+   
Sbjct: 229 KMPVRDAISWNTMISGYAQGGGLSQARRLFDESPTRDVFTWTAMVSGYVQNGMLDEAKTF 288

Query: 220 FIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSV 279
           F EM          N  S N+MI GY++  +++ A+ LF+++P R+  SW +MI GY  +
Sbjct: 289 FDEMP-------EKNEVSYNAMIAGYVQTKKMDIARELFESMPCRNISSWNTMITGYGQI 341

Query: 280 GQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLF 339
           G ++ A   F  MP RD V+W A+I+G  Q+  + EA  +F+E++  G     ATF    
Sbjct: 342 GDIAQARKFFDMMPQRDCVSWAAIIAGYAQSGHYEEALNMFVEIKQDGESLNRATFGCAL 401

Query: 340 GAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLV 399
                 A ++LG+QIH   +K    +   + N L++MY KCG ID A + F  +  +D+V
Sbjct: 402 STCADIAALELGKQIHGQAVKMGYGTGCFVGNALLAMYFKCGSIDEANDTFEGIEEKDVV 461

Query: 400 SWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAM 459
           SWN+M+ G++ HG   + L VFESM  +G  P+ +T +G+LSACSH GL+ RG E F +M
Sbjct: 462 SWNTMLAGYARHGFGRQALTVFESMKTAGVKPDEITMVGVLSACSHTGLLDRGTEYFYSM 521

Query: 460 FDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAE 519
              Y + P  +HY  MI+LLGRAG+++EA++ +  +PF+P    WGALLGA     GN E
Sbjct: 522 TKDYGVIPTSKHYTCMIDLLGRAGRLEEAQDLIRNMPFQPGAASWGALLGASRI-HGNTE 580

Query: 520 IAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRN 579
           + E AA+ + +++P N+  +V+L N+YAASGR V+  K+R  M   GV+KVPG SW+   
Sbjct: 581 LGEKAAEMVFKMEPQNSGMYVLLSNLYAASGRWVDADKMRSKMRDIGVQKVPGYSWVEVQ 640

Query: 580 GGIQMFLSGD 589
             I  F  GD
Sbjct: 641 NKIHTFSVGD 650



 Score =  224 bits (572), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 124/416 (29%), Positives = 213/416 (51%), Gaps = 68/416 (16%)

Query: 7   PKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEA----- 61
           P+  VV   S ++ Y++ G++DEA+ +F  MP++N +S+N +L+ ++ NGR+ EA     
Sbjct: 138 PEKDVVSWNSLLSGYAQNGYVDEAREVFDNMPEKNSISWNGLLAAYVHNGRIEEACLLFE 197

Query: 62  --------------------------RRLFEEMPERNVVSWTAMICGLADAGRVCEARKL 95
                                     R LF++MP R+ +SW  MI G A  G + +AR+L
Sbjct: 198 SKSDWDLISWNCLMGGFVRKKKLGDARWLFDKMPVRDAISWNTMISGYAQGGGLSQARRL 257

Query: 96  FEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAI 155
           F+E P R+V +W +MV G ++NG L+EA+  F+ MP KN +S+NAMIAGYV+   M  A 
Sbjct: 258 FDESPTRDVFTWTAMVSGYVQNGMLDEAKTFFDEMPEKNEVSYNAMIAGYVQTKKMDIAR 317

Query: 156 VLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKE 215
            LFE M  RN+ +W +MI+GY + G++ +    F  MP+++ VSW A+I G+A +G ++E
Sbjct: 318 ELFESMPCRNISSWNTMITGYGQIGDIAQARKFFDMMPQRDCVSWAAIIAGYAQSGHYEE 377

Query: 216 SLLLFIEMKGICDNGNN----CNVQSC----------------------------NSMIN 243
           +L +F+E+K   ++ N     C + +C                            N+++ 
Sbjct: 378 ALNMFVEIKQDGESLNRATFGCALSTCADIAALELGKQIHGQAVKMGYGTGCFVGNALLA 437

Query: 244 GYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDR----DAVA 299
            Y + G ++EA + F+ +  +D +SW +M+ GY   G    A  +F +M       D + 
Sbjct: 438 MYFKCGSIDEANDTFEGIEEKDVVSWNTMLAGYARHGFGRQALTVFESMKTAGVKPDEIT 497

Query: 300 WTAMISGLVQNELFVEATYLFMEM-RAHGVPPLNATFSVLFGAAGATANIDLGRQI 354
              ++S      L    T  F  M + +GV P +  ++ +    G    ++  + +
Sbjct: 498 MVGVLSACSHTGLLDRGTEYFYSMTKDYGVIPTSKHYTCMIDLLGRAGRLEEAQDL 553



 Score =  135 bits (341), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 96/354 (27%), Positives = 165/354 (46%), Gaps = 33/354 (9%)

Query: 161 MEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLF 220
           +++ +++ W   IS + R G  +    +F  MPR++ VS+ AMI G+  N     +  LF
Sbjct: 44  VKDPDILKWNKAISTHMRNGHCDSALHVFNTMPRRSSVSYNAMISGYLRNSKFNLARNLF 103

Query: 221 IEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVG 280
            +M          ++ S N M+ GY+R  RL +A+ LFD +P +D +SW S++ GY   G
Sbjct: 104 DQMP-------ERDLFSWNVMLTGYVRNCRLGDARRLFDLMPEKDVVSWNSLLSGYAQNG 156

Query: 281 QVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFG 340
            V  A  +F NMP++++++W  +++  V N    EA  LF       +     +++ L G
Sbjct: 157 YVDEAREVFDNMPEKNSISWNGLLAAYVHNGRIEEACLLFESKSDWDL----ISWNCLMG 212

Query: 341 AAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVS 400
                  +   R     L       D I  N +IS YA+ G +  A  +F    +RD+ +
Sbjct: 213 GFVRKKKLGDARW----LFDKMPVRDAISWNTMISGYAQGGGLSQARRLFDESPTRDVFT 268

Query: 401 WNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMF 460
           W +MV G+  +G+ +E    F+ M E     N V++  +++       +    ELF +M 
Sbjct: 269 WTAMVSGYVQNGMLDEAKTFFDEMPEK----NEVSYNAMIAGYVQTKKMDIARELFESM- 323

Query: 461 DVYKIQPGPEHYVS----MINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGA 510
                   P   +S    MI   G+ G I +A +F   +P + D   W A++  
Sbjct: 324 --------PCRNISSWNTMITGYGQIGDIAQARKFFDMMP-QRDCVSWAAIIAG 368


>gi|357521591|ref|XP_003631084.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355525106|gb|AET05560.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 980

 Score =  474 bits (1220), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 239/610 (39%), Positives = 365/610 (59%), Gaps = 39/610 (6%)

Query: 11  VVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPE 70
           ++    +I+ + + G  D A  +F  MP+R+ VSYNAM+SG+L+N + + AR LF++MPE
Sbjct: 49  ILKWNKAISTHMRNGHCDSALHVFNTMPRRSSVSYNAMISGYLRNSKFNLARNLFDQMPE 108

Query: 71  RNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSM 130
           R++ SW  M+ G     R+ +AR+LF+ MPE++VVSWNS++ G  +NG ++EAR+VF++M
Sbjct: 109 RDLFSWNVMLTGYVRNCRLGDARRLFDLMPEKDVVSWNSLLSGYAQNGYVDEAREVFDNM 168

Query: 131 PIKNVISWNAMIAGYV------ECCMM-------------------------GEAIVLFE 159
           P KN ISWN ++A YV      E C++                         G+A  LF+
Sbjct: 169 PEKNSISWNGLLAAYVHNGRIEEACLLFESKSDWDLISWNCLMGGFVRKKKLGDARWLFD 228

Query: 160 EMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLL 219
           +M  R+ ++W +MISGY + G + +   LF   P ++V +WTAM+ G+  NG   E+   
Sbjct: 229 KMPVRDAISWNTMISGYAQGGGLSQARRLFDESPTRDVFTWTAMVSGYVQNGMLDEAKTF 288

Query: 220 FIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSV 279
           F EM          N  S N+MI GY++  +++ A+ LF+++P R+  SW +MI GY  +
Sbjct: 289 FDEMP-------EKNEVSYNAMIAGYVQTKKMDIARELFESMPCRNISSWNTMITGYGQI 341

Query: 280 GQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLF 339
           G ++ A   F  MP RD V+W A+I+G  Q+  + EA  +F+E++  G     ATF    
Sbjct: 342 GDIAQARKFFDMMPQRDCVSWAAIIAGYAQSGHYEEALNMFVEIKQDGESLNRATFGCAL 401

Query: 340 GAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLV 399
                 A ++LG+QIH   +K    +   + N L++MY KCG ID A + F  +  +D+V
Sbjct: 402 STCADIAALELGKQIHGQAVKMGYGTGCFVGNALLAMYFKCGSIDEANDTFEGIEEKDVV 461

Query: 400 SWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAM 459
           SWN+M+ G++ HG   + L VFESM  +G  P+ +T +G+LSACSH GL+ RG E F +M
Sbjct: 462 SWNTMLAGYARHGFGRQALTVFESMKTAGVKPDEITMVGVLSACSHTGLLDRGTEYFYSM 521

Query: 460 FDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAE 519
              Y + P  +HY  MI+LLGRAG+++EA++ +  +PF+P    WGALLGA     GN E
Sbjct: 522 TKDYGVIPTSKHYTCMIDLLGRAGRLEEAQDLIRNMPFQPGAASWGALLGASRI-HGNTE 580

Query: 520 IAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRN 579
           + E AA+ + +++P N+  +V+L N+YAASGR V+  K+R  M   GV+KVPG SW+   
Sbjct: 581 LGEKAAEMVFKMEPQNSGMYVLLSNLYAASGRWVDADKMRSKMRDIGVQKVPGYSWVEVQ 640

Query: 580 GGIQMFLSGD 589
             I  F  GD
Sbjct: 641 NKIHTFSVGD 650



 Score =  224 bits (572), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 124/416 (29%), Positives = 213/416 (51%), Gaps = 68/416 (16%)

Query: 7   PKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEA----- 61
           P+  VV   S ++ Y++ G++DEA+ +F  MP++N +S+N +L+ ++ NGR+ EA     
Sbjct: 138 PEKDVVSWNSLLSGYAQNGYVDEAREVFDNMPEKNSISWNGLLAAYVHNGRIEEACLLFE 197

Query: 62  --------------------------RRLFEEMPERNVVSWTAMICGLADAGRVCEARKL 95
                                     R LF++MP R+ +SW  MI G A  G + +AR+L
Sbjct: 198 SKSDWDLISWNCLMGGFVRKKKLGDARWLFDKMPVRDAISWNTMISGYAQGGGLSQARRL 257

Query: 96  FEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAI 155
           F+E P R+V +W +MV G ++NG L+EA+  F+ MP KN +S+NAMIAGYV+   M  A 
Sbjct: 258 FDESPTRDVFTWTAMVSGYVQNGMLDEAKTFFDEMPEKNEVSYNAMIAGYVQTKKMDIAR 317

Query: 156 VLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKE 215
            LFE M  RN+ +W +MI+GY + G++ +    F  MP+++ VSW A+I G+A +G ++E
Sbjct: 318 ELFESMPCRNISSWNTMITGYGQIGDIAQARKFFDMMPQRDCVSWAAIIAGYAQSGHYEE 377

Query: 216 SLLLFIEMKGICDNGNN----CNVQSC----------------------------NSMIN 243
           +L +F+E+K   ++ N     C + +C                            N+++ 
Sbjct: 378 ALNMFVEIKQDGESLNRATFGCALSTCADIAALELGKQIHGQAVKMGYGTGCFVGNALLA 437

Query: 244 GYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMP----DRDAVA 299
            Y + G ++EA + F+ +  +D +SW +M+ GY   G    A  +F +M       D + 
Sbjct: 438 MYFKCGSIDEANDTFEGIEEKDVVSWNTMLAGYARHGFGRQALTVFESMKTAGVKPDEIT 497

Query: 300 WTAMISGLVQNELFVEATYLFMEM-RAHGVPPLNATFSVLFGAAGATANIDLGRQI 354
              ++S      L    T  F  M + +GV P +  ++ +    G    ++  + +
Sbjct: 498 MVGVLSACSHTGLLDRGTEYFYSMTKDYGVIPTSKHYTCMIDLLGRAGRLEEAQDL 553



 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 96/354 (27%), Positives = 165/354 (46%), Gaps = 33/354 (9%)

Query: 161 MEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLF 220
           +++ +++ W   IS + R G  +    +F  MPR++ VS+ AMI G+  N     +  LF
Sbjct: 44  VKDPDILKWNKAISTHMRNGHCDSALHVFNTMPRRSSVSYNAMISGYLRNSKFNLARNLF 103

Query: 221 IEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVG 280
            +M          ++ S N M+ GY+R  RL +A+ LFD +P +D +SW S++ GY   G
Sbjct: 104 DQMP-------ERDLFSWNVMLTGYVRNCRLGDARRLFDLMPEKDVVSWNSLLSGYAQNG 156

Query: 281 QVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFG 340
            V  A  +F NMP++++++W  +++  V N    EA  LF       +     +++ L G
Sbjct: 157 YVDEAREVFDNMPEKNSISWNGLLAAYVHNGRIEEACLLFESKSDWDL----ISWNCLMG 212

Query: 341 AAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVS 400
                  +   R     L       D I  N +IS YA+ G +  A  +F    +RD+ +
Sbjct: 213 GFVRKKKLGDARW----LFDKMPVRDAISWNTMISGYAQGGGLSQARRLFDESPTRDVFT 268

Query: 401 WNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMF 460
           W +MV G+  +G+ +E    F+ M E     N V++  +++       +    ELF +M 
Sbjct: 269 WTAMVSGYVQNGMLDEAKTFFDEMPEK----NEVSYNAMIAGYVQTKKMDIARELFESM- 323

Query: 461 DVYKIQPGPEHYVS----MINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGA 510
                   P   +S    MI   G+ G I +A +F   +P + D   W A++  
Sbjct: 324 --------PCRNISSWNTMITGYGQIGDIAQARKFFDMMP-QRDCVSWAAIIAG 368



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/144 (31%), Positives = 62/144 (43%), Gaps = 39/144 (27%)

Query: 445 HAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIW 504
           + GL+  G E F  M + Y + P  +HY  MI+LLGR  +++E                 
Sbjct: 776 YTGLLDTGAEYFYPMNEEYSVTPTSKHYTCMIDLLGRVDRLEE----------------- 818

Query: 505 GALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGL 564
           GALLGA     GN E+ E AA+   ++ P N+                    K+R D+  
Sbjct: 819 GALLGASRI-HGNTELGEKAAQMFFKMGPQNSGI-----------------SKMR-DV-- 857

Query: 565 KGVRKVPGCSWLMRNGGIQMFLSG 588
            GV+KVPG SW      I  F  G
Sbjct: 858 -GVQKVPGYSWFEVQNKIHTFSVG 880


>gi|356540844|ref|XP_003538894.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Glycine max]
          Length = 748

 Score =  474 bits (1219), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 235/578 (40%), Positives = 369/578 (63%), Gaps = 10/578 (1%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWT 77
           I  Y+K+G  ++AK +F+ MP +++VSYN+ML+G+ QNG++  A + FE M ERNVVSW 
Sbjct: 149 IAGYAKKGQFNDAKKVFEQMPAKDLVSYNSMLAGYTQNGKMHLALQFFESMTERNVVSWN 208

Query: 78  AMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVIS 137
            M+ G   +G +  A +LFE++P  N VSW +M+ GL + G++ EAR++F+ MP KNV+S
Sbjct: 209 LMVAGYVKSGDLSSAWQLFEKIPNPNAVSWVTMLCGLAKYGKMAEARELFDRMPSKNVVS 268

Query: 138 WNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNV 197
           WNAMIA YV+   + EA+ LF++M  ++ V+WT++I+GY R G+++E   ++ +MP K++
Sbjct: 269 WNAMIATYVQDLQVDEAVKLFKKMPHKDSVSWTTIINGYIRVGKLDEARQVYNQMPCKDI 328

Query: 198 VSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNL 257
            + TA++ G   NG   E+  +F  + G  D      V   NSMI GY R GR++EA NL
Sbjct: 329 TAQTALMSGLIQNGRIDEADQMFSRI-GAHD------VVCWNSMIAGYSRSGRMDEALNL 381

Query: 258 FDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEAT 317
           F  +P+++ +SW +MI GY   GQ+  A  +F  M +++ V+W ++I+G +QN L+++A 
Sbjct: 382 FRQMPIKNSVSWNTMISGYAQAGQMDRATEIFQAMREKNIVSWNSLIAGFLQNNLYLDAL 441

Query: 318 YLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMY 377
              + M   G  P  +TF+    A    A + +G Q+H  ++K+   +DL + N LI+MY
Sbjct: 442 KSLVMMGKEGKKPDQSTFACTLSACANLAALQVGNQLHEYILKSGYMNDLFVGNALIAMY 501

Query: 378 AKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFL 437
           AKCG + +A  +F ++   DL+SWNS++ G++ +G AN+  K FE M      P+ VTF+
Sbjct: 502 AKCGRVQSAEQVFRDIECVDLISWNSLISGYALNGYANKAFKAFEQMSSERVVPDEVTFI 561

Query: 438 GILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPF 497
           G+LSACSHAGL ++G ++F  M + + I+P  EHY  +++LLGR G+++EA   V  +  
Sbjct: 562 GMLSACSHAGLANQGLDIFKCMIEDFAIEPLAEHYSCLVDLLGRVGRLEEAFNTVRGMKV 621

Query: 498 EPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHK 557
           + +  +WG+LLGAC     N E+   AA+RL EL+P NA  ++ L N++A +GR  E  +
Sbjct: 622 KANAGLWGSLLGACR-VHKNLELGRFAAERLFELEPHNASNYITLSNMHAEAGRWEEVER 680

Query: 558 LRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQV 595
           +RM M  K   K PGCSW+     IQ FLS D  PA++
Sbjct: 681 VRMLMRGKRAGKQPGCSWIEVQNQIQHFLSHD--PAKL 716



 Score =  297 bits (761), Expect = 9e-78,   Method: Compositional matrix adjust.
 Identities = 168/488 (34%), Positives = 277/488 (56%), Gaps = 26/488 (5%)

Query: 8   KSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEE 67
           K+LV +  S I+  +K   I +A+ LF  M  RN+VS+N M++G+L N  + EA  LF+ 
Sbjct: 46  KNLVTY-NSMISVLAKNARIRDARQLFDQMSLRNLVSWNTMIAGYLHNNMVEEASELFDV 104

Query: 68  MPERNVVSWTAMICGLADAGRVCEARKLFEEMPER-NVVSWNSMVVGLIRNGELNEARKV 126
           MPER+  SW  MI      G++ +AR+L E +P++ +   WN+M+ G  + G+ N+A+KV
Sbjct: 105 MPERDNFSWALMITCYTRKGKLEKARELLELVPDKLDTACWNAMIAGYAKKGQFNDAKKV 164

Query: 127 FNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGY 186
           F  MP K+++S+N+M+AGY +   M  A+  FE M ERNVV+W  M++GY ++G++   +
Sbjct: 165 FEQMPAKDLVSYNSMLAGYTQNGKMHLALQFFESMTERNVVSWNLMVAGYVKSGDLSSAW 224

Query: 187 CLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYI 246
            LF ++P  N VSW  M+ G A  G   E+  LF  M        + NV S N+MI  Y+
Sbjct: 225 QLFEKIPNPNAVSWVTMLCGLAKYGKMAEARELFDRMP-------SKNVVSWNAMIATYV 277

Query: 247 RFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISG 306
           +  +++EA  LF  +P +D +SWT++I+GY+ VG++  A  +++ MP +D  A TA++SG
Sbjct: 278 QDLQVDEAVKLFKKMPHKDSVSWTTIINGYIRVGKLDEARQVYNQMPCKDITAQTALMSG 337

Query: 307 LVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESD 366
           L+QN    EA  +F  + AH V   N+  +    +      ++L RQ+           +
Sbjct: 338 LIQNGRIDEADQMFSRIGAHDVVCWNSMIAGYSRSGRMDEALNLFRQMPI--------KN 389

Query: 367 LILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLE 426
            +  N +IS YA+ G +D A  IF  M  +++VSWNS++ GF  + L  + LK    M +
Sbjct: 390 SVSWNTMISGYAQAGQMDRATEIFQAMREKNIVSWNSLIAGFLQNNLYLDALKSLVMMGK 449

Query: 427 SGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYV----SMINLLGRA 482
            G  P+  TF   LSAC++   +  G +L       Y ++ G  + +    ++I +  + 
Sbjct: 450 EGKKPDQSTFACTLSACANLAALQVGNQLHE-----YILKSGYMNDLFVGNALIAMYAKC 504

Query: 483 GKIKEAEE 490
           G+++ AE+
Sbjct: 505 GRVQSAEQ 512



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 55/203 (27%), Positives = 100/203 (49%), Gaps = 16/203 (7%)

Query: 4   RNHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARR 63
           R  P    V   + I+ Y++ G +D A  +FQ M ++N+VS+N++++GFLQN    +A +
Sbjct: 383 RQMPIKNSVSWNTMISGYAQAGQMDRATEIFQAMREKNIVSWNSLIAGFLQNNLYLDALK 442

Query: 64  LFEEM------PERNVVSWTAMICGLADAGRVCEARKLFEEMPE----RNVVSWNSMVVG 113
               M      P+++  + T   C    A +V    +L E + +     ++   N+++  
Sbjct: 443 SLVMMGKEGKKPDQSTFACTLSACANLAALQV--GNQLHEYILKSGYMNDLFVGNALIAM 500

Query: 114 LIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNV----VTW 169
             + G +  A +VF  +   ++ISWN++I+GY       +A   FE+M    V    VT+
Sbjct: 501 YAKCGRVQSAEQVFRDIECVDLISWNSLISGYALNGYANKAFKAFEQMSSERVVPDEVTF 560

Query: 170 TSMISGYCRAGEVEEGYCLFRRM 192
             M+S    AG   +G  +F+ M
Sbjct: 561 IGMLSACSHAGLANQGLDIFKCM 583



 Score = 52.4 bits (124), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 46/197 (23%), Positives = 85/197 (43%), Gaps = 27/197 (13%)

Query: 371 NCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTH 430
           N  I    K G ++ A  IF NM  ++LV++NSM+   + +    +  ++F+ M    + 
Sbjct: 21  NRQIIQLGKLGKVEEAIRIFFNMTHKNLVTYNSMISVLAKNARIRDARQLFDQM----SL 76

Query: 431 PNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEH----YVSMINLLGRAGKIK 486
            N V++  +++   H  +V    ELF+ M         PE     +  MI    R GK++
Sbjct: 77  RNLVSWNTMIAGYLHNNMVEEASELFDVM---------PERDNFSWALMITCYTRKGKLE 127

Query: 487 EAEEFVLRLPFEPDHRIWGALLGACG----FCEGNAEIAEHAAKRLLELDPL------NA 536
           +A E +  +P + D   W A++        F +      +  AK L+  + +      N 
Sbjct: 128 KARELLELVPDKLDTACWNAMIAGYAKKGQFNDAKKVFEQMPAKDLVSYNSMLAGYTQNG 187

Query: 537 PAHVVLCNIYAASGRHV 553
             H+ L    + + R+V
Sbjct: 188 KMHLALQFFESMTERNV 204


>gi|297809863|ref|XP_002872815.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297318652|gb|EFH49074.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 776

 Score =  473 bits (1217), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 246/614 (40%), Positives = 360/614 (58%), Gaps = 39/614 (6%)

Query: 17  SITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSW 76
           +I+ Y + G   EA  +F+ MP+ + VSYNAM+SG+L+NG    AR LF+EMPER++VSW
Sbjct: 65  AISSYMRTGRCSEALRVFKRMPRWSSVSYNAMISGYLRNGEFELARMLFDEMPERDLVSW 124

Query: 77  TAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVI 136
             MI G      + +AR+LFE MPER+V SWN+++ G  +NG +++AR+VF+ MP KN +
Sbjct: 125 NVMIKGYVRNRNLGKARELFERMPERDVCSWNTILSGYAQNGCVDDARRVFDRMPEKNDV 184

Query: 137 SWNAMIAGYVECCMMGEAIVLF-------------------------------EEMEERN 165
           SWNA+++ YV+   + EA VLF                               + M+ R+
Sbjct: 185 SWNALLSAYVQNSKLEEACVLFGSRENWALVSWNCLLGGFVKKKKIVEARQFFDSMKVRD 244

Query: 166 VVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKG 225
           VV+W ++I+GY + GE++E   LF   P  +V +WTAM+ G+  N   +E+  LF  M  
Sbjct: 245 VVSWNTIITGYAQNGEIDEARQLFDESPVHDVFTWTAMVSGYIQNRMVEEARELFDRMP- 303

Query: 226 ICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNA 285
                   N  S N+M+ GY++  R+E A+ LFD +P R+  +W +MI GY   G++S A
Sbjct: 304 ------ERNEVSWNAMLAGYVQGERVEMAKELFDVMPCRNVSTWNTMITGYAQCGKISEA 357

Query: 286 YYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGAT 345
             LF  MP RD V+W AMI+G  Q+    EA  LF+ M   G     ++FS         
Sbjct: 358 KNLFDKMPKRDPVSWAAMIAGYSQSGHSYEALRLFVLMEREGGRLNRSSFSSALSTCADV 417

Query: 346 ANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMV 405
             ++LG+Q+H  L+K   E+   + N L+ MY KCG I+ A ++F  M  +D+VSWN+M+
Sbjct: 418 VALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDLFKEMAGKDIVSWNTMI 477

Query: 406 MGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKI 465
            G+S HG   E L+ FESM   G  P+  T + +LSACSH GLV +G + F+ M   Y +
Sbjct: 478 AGYSRHGFGEEALRFFESMKREGLKPDDATMVAVLSACSHTGLVDKGRQYFHTMTQDYGV 537

Query: 466 QPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAA 525
           +P  +HY  M++LLGRAG ++EA   +  +PFEPD  IWG LLGA     GN E+AE AA
Sbjct: 538 RPNSQHYACMVDLLGRAGLLEEAHNLMKNMPFEPDAAIWGTLLGASR-VHGNTELAETAA 596

Query: 526 KRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMF 585
            ++  ++P N+  +V+L N+YA+SGR  +  KLR+ M  KGV+KVPG SW+        F
Sbjct: 597 DKIFAMEPENSGMYVLLSNLYASSGRWGDVGKLRVRMRDKGVKKVPGYSWIEIQNKTHTF 656

Query: 586 LSGDKIPAQVAEIL 599
             GD+   +  EI 
Sbjct: 657 SVGDEFHPEKDEIF 670



 Score =  245 bits (626), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 152/476 (31%), Positives = 243/476 (51%), Gaps = 50/476 (10%)

Query: 70  ERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNS 129
           + ++  W   I      GR  EA ++F+ MP  + VS+N+M+ G +RNGE   AR +F+ 
Sbjct: 56  DSDIKEWNVAISSYMRTGRCSEALRVFKRMPRWSSVSYNAMISGYLRNGEFELARMLFDE 115

Query: 130 MPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLF 189
           MP ++++SWN MI GYV    +G+A  LFE M ER+V +W +++SGY + G V++   +F
Sbjct: 116 MPERDLVSWNVMIKGYVRNRNLGKARELFERMPERDVCSWNTILSGYAQNGCVDDARRVF 175

Query: 190 RRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFG 249
            RMP KN VSW A++  +  N   +E+ +LF        +  N  + S N ++ G+++  
Sbjct: 176 DRMPEKNDVSWNALLSAYVQNSKLEEACVLF-------GSRENWALVSWNCLLGGFVKKK 228

Query: 250 RLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQ 309
           ++ EA+  FD++ VRD +SW ++I GY   G++  A  LF   P  D   WTAM+SG +Q
Sbjct: 229 KIVEARQFFDSMKVRDVVSWNTIITGYAQNGEIDEARQLFDESPVHDVFTWTAMVSGYIQ 288

Query: 310 NELFVEATYLFMEMRAHGVPPLN-ATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLI 368
           N +  EA  LF  M     P  N  +++ +         +++ +++  V+       ++ 
Sbjct: 289 NRMVEEARELFDRM-----PERNEVSWNAMLAGYVQGERVEMAKELFDVM----PCRNVS 339

Query: 369 LENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESG 428
             N +I+ YA+CG I  A N+F  M  RD VSW +M+ G+S  G + E L++F  M   G
Sbjct: 340 TWNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSYEALRLFVLMEREG 399

Query: 429 THPNSVTFLGILSACS-----------HAGLVSRGWE----LFNAMF------------- 460
              N  +F   LS C+           H  LV  G+E    + NA+              
Sbjct: 400 GRLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEAN 459

Query: 461 DVYKIQPGPE--HYVSMINLLGRAGKIKEAEEF---VLRLPFEPDHRIWGALLGAC 511
           D++K   G +   + +MI    R G  +EA  F   + R   +PD     A+L AC
Sbjct: 460 DLFKEMAGKDIVSWNTMIAGYSRHGFGEEALRFFESMKREGLKPDDATMVAVLSAC 515



 Score =  220 bits (560), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 138/471 (29%), Positives = 221/471 (46%), Gaps = 96/471 (20%)

Query: 7   PKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEA----- 61
           P+  V    + ++ Y++ G +D+A+ +F  MP++N VS+NA+LS ++QN +L EA     
Sbjct: 148 PERDVCSWNTILSGYAQNGCVDDARRVFDRMPEKNDVSWNALLSAYVQNSKLEEACVLFG 207

Query: 62  --------------------------RRLFEEMPERNVVSWTAMICGLADAGRVCEARKL 95
                                     R+ F+ M  R+VVSW  +I G A  G + EAR+L
Sbjct: 208 SRENWALVSWNCLLGGFVKKKKIVEARQFFDSMKVRDVVSWNTIITGYAQNGEIDEARQL 267

Query: 96  FEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAI 155
           F+E P  +V +W +MV G I+N  + EAR++F+ MP +N +SWNAM+AGYV+   +  A 
Sbjct: 268 FDESPVHDVFTWTAMVSGYIQNRMVEEARELFDRMPERNEVSWNAMLAGYVQGERVEMAK 327

Query: 156 VLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKE 215
            LF+ M  RNV TW +MI+GY + G++ E   LF +MP+++ VSW AMI G++ +G   E
Sbjct: 328 ELFDVMPCRNVSTWNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSYE 387

Query: 216 SLLLFIEMKGICDNGNNCNVQSC--------------------------------NSMIN 243
           +L LF+ M+      N  +  S                                 N+++ 
Sbjct: 388 ALRLFVLMEREGGRLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLL 447

Query: 244 GYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAM 303
            Y + G +EEA +LF  +  +D +SW +MI GY   G                       
Sbjct: 448 MYCKCGSIEEANDLFKEMAGKDIVSWNTMIAGYSRHG----------------------- 484

Query: 304 ISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQ-IHCVLMKTE 362
                      EA   F  M+  G+ P +AT   +  A   T  +D GRQ  H +     
Sbjct: 485 --------FGEEALRFFESMKREGLKPDDATMVAVLSACSHTGLVDKGRQYFHTMTQDYG 536

Query: 363 SESDLILENCLISMYAKCGVIDNAYNIFSNM-VSRDLVSWNSMVMGFSHHG 412
              +     C++ +  + G+++ A+N+  NM    D   W +++     HG
Sbjct: 537 VRPNSQHYACMVDLLGRAGLLEEAHNLMKNMPFEPDAAIWGTLLGASRVHG 587


>gi|359487569|ref|XP_002277031.2| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Vitis vinifera]
          Length = 703

 Score =  473 bits (1216), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 243/585 (41%), Positives = 355/585 (60%), Gaps = 8/585 (1%)

Query: 4   RNHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARR 63
           R +  S+ +   S I +Y++ G I+ A+ +F  MP + +VS+N+M++G+ QN R  EAR 
Sbjct: 9   RRYCTSVAIAYNSQIARYARIGQIESARRVFDEMPDKGIVSWNSMVAGYFQNNRPREARY 68

Query: 64  LFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEA 123
           LF++MPERN VSW  +I G      V EARK F+ MPERNVVSW +MV G ++ G ++EA
Sbjct: 69  LFDKMPERNTVSWNGLISGYVKNRMVSEARKAFDTMPERNVVSWTAMVRGYVQEGLVSEA 128

Query: 124 RKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVE 183
             +F  MP KNV+SW  M+ G ++   + EA  LF+ M  ++VV  T+MISGYC+ G + 
Sbjct: 129 ETLFWQMPEKNVVSWTVMLGGLIQVRRIDEARGLFDIMPVKDVVARTNMISGYCQEGRLA 188

Query: 184 EGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMIN 243
           E   LF  MPR+NV+SWT MI G+  NG    +  LF  M          N  S  +M+ 
Sbjct: 189 EARELFDEMPRRNVISWTTMISGYVQNGQVDVARKLFEVMP-------EKNEVSWTAMLM 241

Query: 244 GYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAM 303
           GY + GR+EEA  LFD +PV+  ++  +MI G+   G+V+ A  +F  + ++D   W+AM
Sbjct: 242 GYTQGGRIEEASELFDAMPVKAVVACNAMILGFGQNGEVAKARQVFDQIREKDDGTWSAM 301

Query: 304 ISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTES 363
           I    +    VEA  LF  M+  GV     +   +     + A++D GRQ+H  L+K++ 
Sbjct: 302 IKVYERKGFEVEALNLFALMQREGVQSNFPSLISVLSVCASLASLDHGRQVHAELVKSQF 361

Query: 364 ESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFES 423
           +SD+ + + LI+MY KCG +  A  IF     +D+V WNS++ G++ HGL  E L+VF  
Sbjct: 362 DSDVFVASVLITMYVKCGDLVKARQIFDRFSPKDIVMWNSIITGYAQHGLVEEALQVFHE 421

Query: 424 MLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAG 483
           M  SG   + VTF+G+LSACS+ G V  G E+F +M   Y ++P  EHY  M++LLGRAG
Sbjct: 422 MCSSGMATDGVTFVGVLSACSYTGKVKEGLEIFESMKSKYLVEPKTEHYACMVDLLGRAG 481

Query: 484 KIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLC 543
            + +A + + ++P E D  IWGALLGAC     N  +AE AAK+LL+L+P NA  +++L 
Sbjct: 482 LVNDAMDLIQKMPVEADAIIWGALLGACR-THMNMNLAEVAAKKLLQLEPKNAGPYILLS 540

Query: 544 NIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSG 588
           NIYA+ GR  +  +LR +M +K V K PGCSW+     + MF  G
Sbjct: 541 NIYASKGRWGDVAELRRNMRVKKVSKSPGCSWIEVEKRVHMFTGG 585


>gi|357483943|ref|XP_003612258.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355513593|gb|AES95216.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 907

 Score =  471 bits (1213), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 234/585 (40%), Positives = 373/585 (63%), Gaps = 10/585 (1%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWT 77
           I  Y+K+G  D+A+ +F+ MP +++VSYN+ML+G+ QNG++  A + FE M ERNVVSW 
Sbjct: 149 IAGYAKKGRFDDAEKVFEKMPVKDLVSYNSMLAGYTQNGKMGLAMKFFERMAERNVVSWN 208

Query: 78  AMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVIS 137
            M+ G  +   +  A +LFE++P+ N VSW +M+ G  R+G++ EARK+F+ MP KNV+S
Sbjct: 209 LMVAGFVNNCDLGSAWELFEKIPDPNAVSWVTMLCGFARHGKIVEARKLFDRMPCKNVVS 268

Query: 138 WNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNV 197
           WNAMIA YV+   + EA+ LF+E   ++ V+WT+MI+GY R G+++E   ++ +MP K+V
Sbjct: 269 WNAMIAAYVQDLQIDEAVKLFKETPYKDCVSWTTMINGYVRVGKLDEAREVYNQMPYKDV 328

Query: 198 VSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNL 257
            + TA++ G   NG   E+  +F ++       N  +    NSMI GY + GR+ EA NL
Sbjct: 329 AAKTALMSGLIQNGRIDEASQVFSQL-------NKRDAICWNSMIAGYCQSGRMSEALNL 381

Query: 258 FDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEAT 317
           F  +PV++ +SW +MI GY   G++  A  +F  M  R+ ++W ++I+G +QN L+++A 
Sbjct: 382 FRQMPVKNAVSWNTMISGYAQAGEMDRATEIFEAMGVRNVISWNSLITGFLQNGLYLDAL 441

Query: 318 YLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMY 377
              + M   G  P  +TF+    +    A + +G+Q+H +++K+   +DL + N LI+MY
Sbjct: 442 KSLVLMGQEGKKPDQSTFACSLSSCANLAALQVGKQLHELILKSGYINDLFVSNALIAMY 501

Query: 378 AKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFL 437
           AKCG + +A  +F ++   DL+SWNS++ G++ +G ANE    FE M   GT P+ VTF+
Sbjct: 502 AKCGGVQSAEKVFKDIEGVDLISWNSLISGYALNGYANEAFWAFEQMSSEGTVPDEVTFI 561

Query: 438 GILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPF 497
           G+LSACSHAGL ++G +LF  M + + I+P  EHY  +++LLGR G+++EA   V  +  
Sbjct: 562 GMLSACSHAGLTNQGVDLFKCMIEGFAIEPLAEHYSCLVDLLGRMGRLEEAFNIVRGMKV 621

Query: 498 EPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHK 557
           + +  +WG+LL AC     N E+ + AA RLLEL+P NA  ++ L N++A +GR  +  +
Sbjct: 622 KANAGLWGSLLAACR-VHKNMELGKIAALRLLELEPHNASNYITLSNMHAEAGRWEDVER 680

Query: 558 LRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGD--KIPAQVAEILL 600
           LR+ M  +   K+PGCSW+     IQ F+S D  K+  +  +I+L
Sbjct: 681 LRVLMRERRAGKLPGCSWIEVQNQIQNFVSDDPGKLRTESIKIIL 725



 Score =  287 bits (734), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 171/514 (33%), Positives = 275/514 (53%), Gaps = 52/514 (10%)

Query: 11  VVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPE 70
           V +    I    K+G IDEAK +F  +  +N  +YN+M++ F +NGR+S+AR+LF++M +
Sbjct: 17  VFNQNKKIIYLGKQGKIDEAKRVFSNVIHKNHATYNSMVTVFAKNGRVSDARQLFDKMSQ 76

Query: 71  RNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVS------------------------ 106
           RN+VSW  MI G      V EA KLF+ M ER+  S                        
Sbjct: 77  RNLVSWNTMIAGYLHNNMVEEAHKLFDLMAERDNFSWALMITCYTRKGMLEKARELFELV 136

Query: 107 --------WNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLF 158
                   WN+M+ G  + G  ++A KVF  MP+K+++S+N+M+AGY +   MG A+  F
Sbjct: 137 PDKLDTACWNAMIAGYAKKGRFDDAEKVFEKMPVKDLVSYNSMLAGYTQNGKMGLAMKFF 196

Query: 159 EEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLL 218
           E M ERNVV+W  M++G+    ++   + LF ++P  N VSW  M+ GFA +G   E+  
Sbjct: 197 ERMAERNVVSWNLMVAGFVNNCDLGSAWELFEKIPDPNAVSWVTMLCGFARHGKIVEARK 256

Query: 219 LFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLS 278
           LF  M   C      NV S N+MI  Y++  +++EA  LF   P +D +SWT+MI+GY+ 
Sbjct: 257 LFDRMP--CK-----NVVSWNAMIAAYVQDLQIDEAVKLFKETPYKDCVSWTTMINGYVR 309

Query: 279 VGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVL 338
           VG++  A  +++ MP +D  A TA++SGL+QN    EA+ +F ++        N+  +  
Sbjct: 310 VGKLDEAREVYNQMPYKDVAAKTALMSGLIQNGRIDEASQVFSQLNKRDAICWNSMIAGY 369

Query: 339 FGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDL 398
             +   +  ++L RQ+           + +  N +IS YA+ G +D A  IF  M  R++
Sbjct: 370 CQSGRMSEALNLFRQMPV--------KNAVSWNTMISGYAQAGEMDRATEIFEAMGVRNV 421

Query: 399 VSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNA 458
           +SWNS++ GF  +GL  + LK    M + G  P+  TF   LS+C++   +  G +L   
Sbjct: 422 ISWNSLITGFLQNGLYLDALKSLVLMGQEGKKPDQSTFACSLSSCANLAALQVGKQLHEL 481

Query: 459 MFDVYKIQPGPEHYVS--MINLLGRAGKIKEAEE 490
           +     I    + +VS  +I +  + G ++ AE+
Sbjct: 482 ILKSGYIN---DLFVSNALIAMYAKCGGVQSAEK 512



 Score =  219 bits (557), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 131/414 (31%), Positives = 229/414 (55%), Gaps = 15/414 (3%)

Query: 7   PKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFE 66
           P    V   + +  +++ G I EA+ LF  MP +NVVS+NAM++ ++Q+ ++ EA +LF+
Sbjct: 231 PDPNAVSWVTMLCGFARHGKIVEARKLFDRMPCKNVVSWNAMIAAYVQDLQIDEAVKLFK 290

Query: 67  EMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKV 126
           E P ++ VSWT MI G    G++ EAR+++ +MP ++V +  +++ GLI+NG ++EA +V
Sbjct: 291 ETPYKDCVSWTTMINGYVRVGKLDEAREVYNQMPYKDVAAKTALMSGLIQNGRIDEASQV 350

Query: 127 FNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGY 186
           F+ +  ++ I WN+MIAGY +   M EA+ LF +M  +N V+W +MISGY +AGE++   
Sbjct: 351 FSQLNKRDAICWNSMIAGYCQSGRMSEALNLFRQMPVKNAVSWNTMISGYAQAGEMDRAT 410

Query: 187 CLFRRMPRKNVVSWTAMIGGFAWNGFHKESL----LLFIEMKGICDNGNNCNVQSCNSMI 242
            +F  M  +NV+SW ++I GF  NG + ++L    L+  E K    +   C++ SC ++ 
Sbjct: 411 EIFEAMGVRNVISWNSLITGFLQNGLYLDALKSLVLMGQEGKKPDQSTFACSLSSCANL- 469

Query: 243 NGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTA 302
              ++ G+ +  + +  +  + D     ++I  Y   G V +A  +F ++   D ++W +
Sbjct: 470 -AALQVGK-QLHELILKSGYINDLFVSNALIAMYAKCGGVQSAEKVFKDIEGVDLISWNS 527

Query: 303 MISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGA---AGAT-ANIDLGRQIHCVL 358
           +ISG   N    EA + F +M + G  P   TF  +  A   AG T   +DL     C++
Sbjct: 528 LISGYALNGYANEAFWAFEQMSSEGTVPDEVTFIGMLSACSHAGLTNQGVDL---FKCMI 584

Query: 359 MKTESESDLILENCLISMYAKCGVIDNAYNIFSNM-VSRDLVSWNSMVMGFSHH 411
                E      +CL+ +  + G ++ A+NI   M V  +   W S++     H
Sbjct: 585 EGFAIEPLAEHYSCLVDLLGRMGRLEEAFNIVRGMKVKANAGLWGSLLAACRVH 638



 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 71/283 (25%), Positives = 125/283 (44%), Gaps = 46/283 (16%)

Query: 4   RNHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARR 63
           R  P    V   + I+ Y++ G +D A  +F+ M  RNV+S+N++++GFLQNG   +A +
Sbjct: 383 RQMPVKNAVSWNTMISGYAQAGEMDRATEIFEAMGVRNVISWNSLITGFLQNGLYLDALK 442

Query: 64  ----LFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVS----WNSMVVGLI 115
               + +E  + +  ++   +   A+   +   ++L E + +   ++     N+++    
Sbjct: 443 SLVLMGQEGKKPDQSTFACSLSSCANLAALQVGKQLHELILKSGYINDLFVSNALIAMYA 502

Query: 116 RNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNV----VTWTS 171
           + G +  A KVF  +   ++ISWN++I+GY       EA   FE+M         VT+  
Sbjct: 503 KCGGVQSAEKVFKDIEGVDLISWNSLISGYALNGYANEAFWAFEQMSSEGTVPDEVTFIG 562

Query: 172 MISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGN 231
           M+S    AG   +G  LF+            MI GFA      E     +++ G      
Sbjct: 563 MLSACSHAGLTNQGVDLFK-----------CMIEGFAIEPL-AEHYSCLVDLLG------ 604

Query: 232 NCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEIS-WTSMI 273
                          R GRLEEA N+   + V+     W S++
Sbjct: 605 ---------------RMGRLEEAFNIVRGMKVKANAGLWGSLL 632


>gi|15235498|ref|NP_192184.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75213324|sp|Q9SY02.1|PP301_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g02750
 gi|4263522|gb|AAD15348.1| hypothetical protein [Arabidopsis thaliana]
 gi|7269760|emb|CAB77760.1| hypothetical protein [Arabidopsis thaliana]
 gi|332656824|gb|AEE82224.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 781

 Score =  469 bits (1208), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 243/614 (39%), Positives = 360/614 (58%), Gaps = 39/614 (6%)

Query: 17  SITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSW 76
           +I+ Y + G  +EA  +F+ MP+ + VSYN M+SG+L+NG    AR+LF+EMPER++VSW
Sbjct: 70  AISSYMRTGRCNEALRVFKRMPRWSSVSYNGMISGYLRNGEFELARKLFDEMPERDLVSW 129

Query: 77  TAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVI 136
             MI G      + +AR+LFE MPER+V SWN+M+ G  +NG +++AR VF+ MP KN +
Sbjct: 130 NVMIKGYVRNRNLGKARELFEIMPERDVCSWNTMLSGYAQNGCVDDARSVFDRMPEKNDV 189

Query: 137 SWNAMIAGYVECCMMGEAIVLFEEMEE-------------------------------RN 165
           SWNA+++ YV+   M EA +LF+  E                                R+
Sbjct: 190 SWNALLSAYVQNSKMEEACMLFKSRENWALVSWNCLLGGFVKKKKIVEARQFFDSMNVRD 249

Query: 166 VVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKG 225
           VV+W ++I+GY ++G+++E   LF   P ++V +WTAM+ G+  N   +E+  LF +M  
Sbjct: 250 VVSWNTIITGYAQSGKIDEARQLFDESPVQDVFTWTAMVSGYIQNRMVEEARELFDKMP- 308

Query: 226 ICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNA 285
                   N  S N+M+ GY++  R+E A+ LFD +P R+  +W +MI GY   G++S A
Sbjct: 309 ------ERNEVSWNAMLAGYVQGERMEMAKELFDVMPCRNVSTWNTMITGYAQCGKISEA 362

Query: 286 YYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGAT 345
             LF  MP RD V+W AMI+G  Q+    EA  LF++M   G     ++FS         
Sbjct: 363 KNLFDKMPKRDPVSWAAMIAGYSQSGHSFEALRLFVQMEREGGRLNRSSFSSALSTCADV 422

Query: 346 ANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMV 405
             ++LG+Q+H  L+K   E+   + N L+ MY KCG I+ A ++F  M  +D+VSWN+M+
Sbjct: 423 VALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDLFKEMAGKDIVSWNTMI 482

Query: 406 MGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKI 465
            G+S HG     L+ FESM   G  P+  T + +LSACSH GLV +G + F  M   Y +
Sbjct: 483 AGYSRHGFGEVALRFFESMKREGLKPDDATMVAVLSACSHTGLVDKGRQYFYTMTQDYGV 542

Query: 466 QPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAA 525
            P  +HY  M++LLGRAG +++A   +  +PFEPD  IWG LLGA     GN E+AE AA
Sbjct: 543 MPNSQHYACMVDLLGRAGLLEDAHNLMKNMPFEPDAAIWGTLLGA-SRVHGNTELAETAA 601

Query: 526 KRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMF 585
            ++  ++P N+  +V+L N+YA+SGR  +  KLR+ M  KGV+KVPG SW+        F
Sbjct: 602 DKIFAMEPENSGMYVLLSNLYASSGRWGDVGKLRVRMRDKGVKKVPGYSWIEIQNKTHTF 661

Query: 586 LSGDKIPAQVAEIL 599
             GD+   +  EI 
Sbjct: 662 SVGDEFHPEKDEIF 675



 Score =  224 bits (571), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 140/476 (29%), Positives = 231/476 (48%), Gaps = 106/476 (22%)

Query: 7   PKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEA----- 61
           P+  V    + ++ Y++ G +D+A+++F  MP++N VS+NA+LS ++QN ++ EA     
Sbjct: 153 PERDVCSWNTMLSGYAQNGCVDDARSVFDRMPEKNDVSWNALLSAYVQNSKMEEACMLFK 212

Query: 62  --------------------------RRLFEEMPERNVVSWTAMICGLADAGRVCEARKL 95
                                     R+ F+ M  R+VVSW  +I G A +G++ EAR+L
Sbjct: 213 SRENWALVSWNCLLGGFVKKKKIVEARQFFDSMNVRDVVSWNTIITGYAQSGKIDEARQL 272

Query: 96  FEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAI 155
           F+E P ++V +W +MV G I+N  + EAR++F+ MP +N +SWNAM+AGYV+   M  A 
Sbjct: 273 FDESPVQDVFTWTAMVSGYIQNRMVEEARELFDKMPERNEVSWNAMLAGYVQGERMEMAK 332

Query: 156 VLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKE 215
            LF+ M  RNV TW +MI+GY + G++ E   LF +MP+++ VSW AMI G++ +G   E
Sbjct: 333 ELFDVMPCRNVSTWNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSFE 392

Query: 216 SLLLFIEMKGICDNGNNCNVQSC--------------------------------NSMIN 243
           +L LF++M+      N  +  S                                 N+++ 
Sbjct: 393 ALRLFVQMEREGGRLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLL 452

Query: 244 GYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAM 303
            Y + G +EEA +LF  +  +D +SW +MI GY   G                       
Sbjct: 453 MYCKCGSIEEANDLFKEMAGKDIVSWNTMIAGYSRHG----------------------- 489

Query: 304 ISGLVQNELFVEATYLFME-MRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTE 362
                    F E    F E M+  G+ P +AT   +  A   T  +D GRQ       T 
Sbjct: 490 ---------FGEVALRFFESMKREGLKPDDATMVAVLSACSHTGLVDKGRQ----YFYTM 536

Query: 363 SESDLILEN-----CLISMYAKCGVIDNAYNIFSNM-VSRDLVSWNSMVMGFSHHG 412
           ++   ++ N     C++ +  + G++++A+N+  NM    D   W +++     HG
Sbjct: 537 TQDYGVMPNSQHYACMVDLLGRAGLLEDAHNLMKNMPFEPDAAIWGTLLGASRVHG 592



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 88/364 (24%), Positives = 158/364 (43%), Gaps = 45/364 (12%)

Query: 232 NCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHN 291
           + +++  N  I+ Y+R GR  EA  +F  +P    +S+  MI GYL  G+   A  LF  
Sbjct: 61  DSDIKEWNVAISSYMRTGRCNEALRVFKRMPRWSSVSYNGMISGYLRNGEFELARKLFDE 120

Query: 292 MPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLG 351
           MP+RD V+W  MI G V+N    +A  LF  M    V     +++ +         +D  
Sbjct: 121 MPERDLVSWNVMIKGYVRNRNLGKARELFEIMPERDV----CSWNTMLSGYAQNGCVDDA 176

Query: 352 RQIH---------------------------CVLMKTESESDLILENCLISMYAKCGVID 384
           R +                            C+L K+     L+  NCL+  + K   I 
Sbjct: 177 RSVFDRMPEKNDVSWNALLSAYVQNSKMEEACMLFKSRENWALVSWNCLLGGFVKKKKIV 236

Query: 385 NAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACS 444
            A   F +M  RD+VSWN+++ G++  G  +E  ++F+   ES    +  T+  ++S   
Sbjct: 237 EARQFFDSMNVRDVVSWNTIITGYAQSGKIDEARQLFD---ESPVQ-DVFTWTAMVSGYI 292

Query: 445 HAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIW 504
              +V    ELF+ M +  ++      + +M+    +  +++ A+E    +P   +   W
Sbjct: 293 QNRMVEEARELFDKMPERNEVS-----WNAMLAGYVQGERMEMAKELFDVMPCR-NVSTW 346

Query: 505 GALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGL 564
             ++     C G    A++   ++ + DP++  A +     Y+ SG   E  +L + M  
Sbjct: 347 NTMITGYAQC-GKISEAKNLFDKMPKRDPVSWAAMIA---GYSQSGHSFEALRLFVQMER 402

Query: 565 KGVR 568
           +G R
Sbjct: 403 EGGR 406


>gi|359483031|ref|XP_002271968.2| PREDICTED: pentatricopeptide repeat-containing protein At4g02750
           [Vitis vinifera]
          Length = 788

 Score =  467 bits (1201), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 236/581 (40%), Positives = 361/581 (62%), Gaps = 8/581 (1%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWT 77
           +  Y+K    DEA+ LF  MP +++VS+N+ML+G+ +NG +    + FEEM ER+VVSW 
Sbjct: 147 VAGYAKNRQFDEARRLFDAMPAKDLVSWNSMLTGYTRNGEMRLGLQFFEEMAERDVVSWN 206

Query: 78  AMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVIS 137
            M+ G  + G +  + + FE++P  N VSW +M+ G  R G++ EAR++F+ MPI+NV++
Sbjct: 207 LMVDGFVEVGDLNSSWEFFEKIPNPNTVSWVTMLCGFARFGKIAEARRLFDQMPIRNVVA 266

Query: 138 WNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNV 197
           WNAMIA YV+ C + EAI LF EM E+N ++WT++I+GY R G+++E   L  +MP +NV
Sbjct: 267 WNAMIAAYVQNCHVDEAISLFMEMPEKNSISWTTVINGYVRMGKLDEARQLLNQMPYRNV 326

Query: 198 VSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNL 257
            + TAMI G+  N    ++  +F ++  I D      V   N+MI GY + GR++EA +L
Sbjct: 327 AAQTAMISGYVQNKRMDDARQIFNQI-SIRD------VVCWNTMIAGYSQCGRMDEALHL 379

Query: 258 FDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEAT 317
           F  +  +D +SW +M+  Y  VGQ+  A  +F  M +++ V+W ++ISGL QN  +++A 
Sbjct: 380 FKQMVKKDIVSWNTMVASYAQVGQMDAAIKIFEEMKEKNIVSWNSLISGLTQNGSYLDAL 439

Query: 318 YLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMY 377
             FM M   G  P  +TF+    +    A + +G+Q+H ++MK+   +DL + N LI+MY
Sbjct: 440 KSFMLMGHEGQKPDQSTFACGLSSCAHLAALQVGKQLHQLVMKSGYATDLFVSNALITMY 499

Query: 378 AKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFL 437
           AKCG I +A  +F ++   D+VSWNS++  ++ +G   E LK+F  M   G  P+ VTF+
Sbjct: 500 AKCGSISSAELLFKDIDHFDVVSWNSLIAAYALNGNGREALKLFHKMEVEGVAPDEVTFV 559

Query: 438 GILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPF 497
           GILSACSH GL+ +G +LF  M   Y I+P  EHY  M++LLGRAG+++EA + V  +  
Sbjct: 560 GILSACSHVGLIDQGLKLFKCMVQAYNIEPLAEHYACMVDLLGRAGRLEEAFQLVRGMKI 619

Query: 498 EPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHK 557
             +  IWGALLGAC    GN E+A+ AA++LLE +P     +V+L N+ A +GR  E  +
Sbjct: 620 NANAGIWGALLGACRI-HGNLELAKFAAEKLLEFEPHKTSNYVLLSNMQAEAGRWDEVAR 678

Query: 558 LRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
           +R  M  KG  K PG SW+     +  FLS D    +  E+
Sbjct: 679 VRRLMKEKGAEKQPGWSWIELQNRVHAFLSEDPAHPRAVEL 719



 Score =  305 bits (780), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 195/591 (32%), Positives = 305/591 (51%), Gaps = 61/591 (10%)

Query: 9   SLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEM 68
           S V      IT+  K G IDEA  +FQ M  +N V++N+M+S F +NGR+S+AR+LF+ M
Sbjct: 13  SYVFRHNLKITQLGKSGQIDEAIKVFQHMTHKNTVTHNSMISAFAKNGRISDARQLFDGM 72

Query: 69  PERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSW--------------------- 107
           P+RN+VSW +MI       RV EAR+LF++MP R++ SW                     
Sbjct: 73  PQRNIVSWNSMIAAYLHNDRVEEARQLFDKMPTRDLYSWTLMITCYTRNGELAKARNLFN 132

Query: 108 -----------NSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIV 156
                      N+MV G  +N + +EAR++F++MP K+++SWN+M+ GY     M   + 
Sbjct: 133 LLPYKWNPVCCNAMVAGYAKNRQFDEARRLFDAMPAKDLVSWNSMLTGYTRNGEMRLGLQ 192

Query: 157 LFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKES 216
            FEEM ER+VV+W  M+ G+   G++   +  F ++P  N VSW  M+ GFA  G   E+
Sbjct: 193 FFEEMAERDVVSWNLMVDGFVEVGDLNSSWEFFEKIPNPNTVSWVTMLCGFARFGKIAEA 252

Query: 217 LLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGY 276
             LF +M          NV + N+MI  Y++   ++EA +LF  +P ++ ISWT++I+GY
Sbjct: 253 RRLFDQMPIR-------NVVAWNAMIAAYVQNCHVDEAISLFMEMPEKNSISWTTVINGY 305

Query: 277 LSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFS 336
           + +G++  A  L + MP R+  A TAMISG VQN+   +A  +F ++    V   N    
Sbjct: 306 VRMGKLDEARQLLNQMPYRNVAAQTAMISGYVQNKRMDDARQIFNQISIRDVVCWNTMI- 364

Query: 337 VLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSR 396
                AG +    +   +H  L K   + D++  N +++ YA+ G +D A  IF  M  +
Sbjct: 365 -----AGYSQCGRMDEALH--LFKQMVKKDIVSWNTMVASYAQVGQMDAAIKIFEEMKEK 417

Query: 397 DLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELF 456
           ++VSWNS++ G + +G   + LK F  M   G  P+  TF   LS+C+H   +  G +L 
Sbjct: 418 NIVSWNSLISGLTQNGSYLDALKSFMLMGHEGQKPDQSTFACGLSSCAHLAALQVGKQLH 477

Query: 457 NAMFDVYKIQPGPEHYVS--MINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFC 514
                V K     + +VS  +I +  + G I  A E + +     D   W +L+ A    
Sbjct: 478 QL---VMKSGYATDLFVSNALITMYAKCGSISSA-ELLFKDIDHFDVVSWNSLIAAYAL- 532

Query: 515 EGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLK 565
            GN   A     + +E++ + AP  V    I +A       H   +D GLK
Sbjct: 533 NGNGREALKLFHK-MEVEGV-APDEVTFVGILSACS-----HVGLIDQGLK 576



 Score =  231 bits (590), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 134/435 (30%), Positives = 232/435 (53%), Gaps = 13/435 (2%)

Query: 7   PKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFE 66
           P    V   + +  +++ G I EA+ LF  MP RNVV++NAM++ ++QN  + EA  LF 
Sbjct: 229 PNPNTVSWVTMLCGFARFGKIAEARRLFDQMPIRNVVAWNAMIAAYVQNCHVDEAISLFM 288

Query: 67  EMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKV 126
           EMPE+N +SWT +I G    G++ EAR+L  +MP RNV +  +M+ G ++N  +++AR++
Sbjct: 289 EMPEKNSISWTTVINGYVRMGKLDEARQLLNQMPYRNVAAQTAMISGYVQNKRMDDARQI 348

Query: 127 FNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGY 186
           FN + I++V+ WN MIAGY +C  M EA+ LF++M ++++V+W +M++ Y + G+++   
Sbjct: 349 FNQISIRDVVCWNTMIAGYSQCGRMDEALHLFKQMVKKDIVSWNTMVASYAQVGQMDAAI 408

Query: 187 CLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNN----CNVQSCNSMI 242
            +F  M  KN+VSW ++I G   NG + ++L  F+ M       +     C + SC  + 
Sbjct: 409 KIFEEMKEKNIVSWNSLISGLTQNGSYLDALKSFMLMGHEGQKPDQSTFACGLSSCAHL- 467

Query: 243 NGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTA 302
              ++ G+ +  Q +  +    D     ++I  Y   G +S+A  LF ++   D V+W +
Sbjct: 468 -AALQVGK-QLHQLVMKSGYATDLFVSNALITMYAKCGSISSAELLFKDIDHFDVVSWNS 525

Query: 303 MISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQI-HCVLMKT 361
           +I+    N    EA  LF +M   GV P   TF  +  A      ID G ++  C++   
Sbjct: 526 LIAAYALNGNGREALKLFHKMEVEGVAPDEVTFVGILSACSHVGLIDQGLKLFKCMVQAY 585

Query: 362 ESESDLILENCLISMYAKCGVIDNAYNIFSNM-VSRDLVSWNSMVMGFSHHGLANETLKV 420
             E       C++ +  + G ++ A+ +   M ++ +   W +++     HG  N  L  
Sbjct: 586 NIEPLAEHYACMVDLLGRAGRLEEAFQLVRGMKINANAGIWGALLGACRIHG--NLELAK 643

Query: 421 F--ESMLESGTHPNS 433
           F  E +LE   H  S
Sbjct: 644 FAAEKLLEFEPHKTS 658


>gi|449488311|ref|XP_004157997.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Cucumis sativus]
          Length = 785

 Score =  459 bits (1180), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 233/586 (39%), Positives = 358/586 (61%), Gaps = 8/586 (1%)

Query: 4   RNHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARR 63
           R +  + ++   S IT+YS+ G I++A+ +F  M  +N++S+N++++G+ QN R  EA+ 
Sbjct: 91  RFYCSNFIISRNSLITRYSRLGQIEKARVVFDEMRDKNIISWNSIVAGYFQNKRPQEAQN 150

Query: 64  LFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEA 123
           +F++M ERN +SW  ++ G  + G + EAR++F+ MPERNVVSW +MV G ++ G ++EA
Sbjct: 151 MFDKMSERNTISWNGLVSGYINNGMINEAREVFDRMPERNVVSWTAMVRGYVKEGMISEA 210

Query: 124 RKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVE 183
             +F  MP KNV+SW  M+ G ++   + EA  LF+ M E++VVT T+MI GYC+ G + 
Sbjct: 211 ETLFWQMPEKNVVSWTVMLGGLLQEGRIDEACRLFDMMPEKDVVTRTNMIGGYCQVGRLV 270

Query: 184 EGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMIN 243
           E   LF  MPR+NVVSWT MI G+  N     +  LF  M          N  S  +M+ 
Sbjct: 271 EARMLFDEMPRRNVVSWTTMITGYVQNQQVDIARKLFEVMP-------EKNEVSWTAMLK 323

Query: 244 GYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAM 303
           GY   GRL+EA  LF+ +P++  ++  +MI  +   G+V  A  +F  M ++D   W+AM
Sbjct: 324 GYTNCGRLDEASELFNAMPIKSVVACNAMILCFGQNGEVPKARQVFDQMREKDEGTWSAM 383

Query: 304 ISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTES 363
           I    +  L ++A  LF  M+  G+ P   +   +       AN+D GR+IH  L++++ 
Sbjct: 384 IKVYERKGLELDALELFRMMQREGIRPNFPSLISVLSVCAGLANLDHGREIHAQLVRSQF 443

Query: 364 ESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFES 423
           + D+ + + L+SMY KCG +  A  +F     +D+V WNS++ G++ HGL  E L+VF  
Sbjct: 444 DLDVYVASVLLSMYIKCGNLAKAKQVFDRFAVKDVVMWNSIITGYAQHGLGVEALRVFHD 503

Query: 424 MLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAG 483
           M  SG  P+ VTF+G+LSACS+ G V +G E+FN+M   Y+++   EHY  M++LLGRAG
Sbjct: 504 MHFSGIMPDDVTFVGVLSACSYTGNVKKGLEIFNSMETKYQVEQKIEHYACMVDLLGRAG 563

Query: 484 KIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLC 543
           K+ EA + + ++P E D  IWGALLGAC       ++AE AAK+LL L+P NA   ++L 
Sbjct: 564 KLNEAMDLIEKMPMEADAIIWGALLGACR-THMKLDLAEVAAKKLLVLEPKNAGPFILLS 622

Query: 544 NIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGD 589
           NIYA+ GR  +  +LR +M  + V K PGCSW++    +  F  GD
Sbjct: 623 NIYASQGRWDDVAELRRNMRDRRVSKYPGCSWIVVEKKVHKFTGGD 668


>gi|449453226|ref|XP_004144359.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Cucumis sativus]
          Length = 785

 Score =  459 bits (1180), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 233/586 (39%), Positives = 358/586 (61%), Gaps = 8/586 (1%)

Query: 4   RNHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARR 63
           R +  + ++   S IT+YS+ G I++A+ +F  M  +N++S+N++++G+ QN R  EA+ 
Sbjct: 91  RFYCSNFIISRNSLITRYSRLGQIEKARVVFDEMRDKNIISWNSIVAGYFQNKRPQEAQN 150

Query: 64  LFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEA 123
           +F++M ERN +SW  ++ G  + G + EAR++F+ MPERNVVSW +MV G ++ G ++EA
Sbjct: 151 MFDKMSERNTISWNGLVSGYINNGMINEAREVFDRMPERNVVSWTAMVRGYVKEGMISEA 210

Query: 124 RKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVE 183
             +F  MP KNV+SW  M+ G ++   + EA  LF+ M E++VVT T+MI GYC+ G + 
Sbjct: 211 ETLFWQMPEKNVVSWTVMLGGLLQEGRIDEACRLFDMMPEKDVVTRTNMIGGYCQVGRLV 270

Query: 184 EGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMIN 243
           E   LF  MPR+NVVSWT MI G+  N     +  LF  M          N  S  +M+ 
Sbjct: 271 EARMLFDEMPRRNVVSWTTMITGYVQNQQVDIARKLFEVMP-------EKNEVSWTAMLK 323

Query: 244 GYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAM 303
           GY   GRL+EA  LF+ +P++  ++  +MI  +   G+V  A  +F  M ++D   W+AM
Sbjct: 324 GYTNCGRLDEASELFNAMPIKSVVACNAMILCFGQNGEVPKARQVFDQMREKDEGTWSAM 383

Query: 304 ISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTES 363
           I    +  L ++A  LF  M+  G+ P   +   +       AN+D GR+IH  L++++ 
Sbjct: 384 IKVYERKGLELDALELFRMMQREGIRPNFPSLISVLSVCAGLANLDHGREIHAQLVRSQF 443

Query: 364 ESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFES 423
           + D+ + + L+SMY KCG +  A  +F     +D+V WNS++ G++ HGL  E L+VF  
Sbjct: 444 DLDVYVASVLLSMYIKCGNLAKAKQVFDRFAVKDVVMWNSIITGYAQHGLGVEALRVFHD 503

Query: 424 MLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAG 483
           M  SG  P+ VTF+G+LSACS+ G V +G E+FN+M   Y+++   EHY  M++LLGRAG
Sbjct: 504 MHFSGIMPDDVTFVGVLSACSYTGNVKKGLEIFNSMETKYQVEQKIEHYACMVDLLGRAG 563

Query: 484 KIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLC 543
           K+ EA + + ++P E D  IWGALLGAC       ++AE AAK+LL L+P NA   ++L 
Sbjct: 564 KLNEAMDLIEKMPMEADAIIWGALLGACR-THMKLDLAEVAAKKLLVLEPKNAGPFILLS 622

Query: 544 NIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGD 589
           NIYA+ GR  +  +LR +M  + V K PGCSW++    +  F  GD
Sbjct: 623 NIYASQGRWDDVAELRRNMRDRRVSKYPGCSWIVVEKKVHKFTGGD 668


>gi|359481906|ref|XP_003632690.1| PREDICTED: pentatricopeptide repeat-containing protein At2g35030,
           mitochondrial-like [Vitis vinifera]
          Length = 635

 Score =  457 bits (1176), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 232/558 (41%), Positives = 349/558 (62%), Gaps = 12/558 (2%)

Query: 41  NVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEM- 99
           NV   N M++   ++GR+ EARRLF+EM E +V++WT +I G    G + EAR+LF+ + 
Sbjct: 51  NVARCNWMITNLSKDGRIMEARRLFDEMREPDVITWTTVISGYIKCGMIEEARRLFDRVD 110

Query: 100 PERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFE 159
            ++NVV+W +MV G IR+ ++++A K+FN MP KNV+SWN MI GY +   +  A+ LFE
Sbjct: 111 AKKNVVTWTAMVGGYIRSNKISDAEKLFNEMPNKNVVSWNTMIDGYAQNGRIDSAMYLFE 170

Query: 160 EMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLL 219
           +M ERNVV+W +++S   + G +EE   LF RMP ++V+SWTAMI G + NG   E+ LL
Sbjct: 171 KMPERNVVSWNTVMSMLAQCGRIEEARRLFDRMPERDVISWTAMIAGLSKNGRIDEARLL 230

Query: 220 FIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSV 279
           F  M          NV S N+MI GY +  RL+EA +LF+ +P RD  SW +MI G +  
Sbjct: 231 FDRMP-------ERNVVSWNAMITGYAQNLRLDEALDLFERMPERDLPSWNTMITGLIQN 283

Query: 280 GQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEM-RAHGVPPLNATFSVL 338
           G +  A  LF+ MP ++ ++WT MI+G VQ     EA  +F  M   +G  P   TF  +
Sbjct: 284 GDLRRARKLFNEMPKKNVISWTTMITGCVQEGESEEALKIFSRMLSTNGAKPNQGTFVSV 343

Query: 339 FGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVS--R 396
            GA    A +  G+Q+H ++ KT  +    + + LI+MY+KCG +  A  +F + ++  R
Sbjct: 344 LGACSNLAGLGEGQQVHQIISKTVYQDSTFVVSALINMYSKCGELGTARKMFDDGMTSQR 403

Query: 397 DLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELF 456
           DLVSWN ++  ++HHG   E +  F+ M +SG  P+ VT++G+LSACSHAGLV  G + F
Sbjct: 404 DLVSWNGIIAAYAHHGYGKEAINFFKEMRKSGFKPDDVTYVGLLSACSHAGLVEEGLKYF 463

Query: 457 NAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEG 516
           + +     I    +HY  +++L GRAG++KEA  F+ RL  +P  R+WGALL  C     
Sbjct: 464 DELVKDRSILVREDHYACLVDLCGRAGRLKEAFGFIERLETKPSARVWGALLAGCN-VHA 522

Query: 517 NAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWL 576
           N +I + AAK+LLE++P NA  +++L NIYA++G+  E  ++R+ M  KG++K PGCSW+
Sbjct: 523 NVKIGKQAAKKLLEVEPENAGTYLLLSNIYASTGKWREAARVRLKMKDKGLKKQPGCSWI 582

Query: 577 MRNGGIQMFLSGDKIPAQ 594
                + +F+ GDK  +Q
Sbjct: 583 EVGNRVHVFVVGDKSHSQ 600



 Score =  259 bits (662), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 160/478 (33%), Positives = 250/478 (52%), Gaps = 18/478 (3%)

Query: 3   ERNHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEAR 62
           +R   K  VV  T+ +  Y +   I +A+ LF  MP +NVVS+N M+ G+ QNGR+  A 
Sbjct: 107 DRVDAKKNVVTWTAMVGGYIRSNKISDAEKLFNEMPNKNVVSWNTMIDGYAQNGRIDSAM 166

Query: 63  RLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNE 122
            LFE+MPERNVVSW  ++  LA  GR+ EAR+LF+ MPER+V+SW +M+ GL +NG ++E
Sbjct: 167 YLFEKMPERNVVSWNTVMSMLAQCGRIEEARRLFDRMPERDVISWTAMIAGLSKNGRIDE 226

Query: 123 ARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEV 182
           AR +F+ MP +NV+SWNAMI GY +   + EA+ LFE M ER++ +W +MI+G  + G++
Sbjct: 227 ARLLFDRMPERNVVSWNAMITGYAQNLRLDEALDLFERMPERDLPSWNTMITGLIQNGDL 286

Query: 183 EEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMI 242
                LF  MP+KNV+SWT MI G    G  +E+L +F  M  +  NG   N  +  S++
Sbjct: 287 RRARKLFNEMPKKNVISWTTMITGCVQEGESEEALKIFSRM--LSTNGAKPNQGTFVSVL 344

Query: 243 NGYIRFGRLEEAQNLFD----TVPVRDEISWTSMIDGYLSVGQVSNAYYLFHN--MPDRD 296
                   L E Q +      TV        +++I+ Y   G++  A  +F +     RD
Sbjct: 345 GACSNLAGLGEGQQVHQIISKTVYQDSTFVVSALINMYSKCGELGTARKMFDDGMTSQRD 404

Query: 297 AVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHC 356
            V+W  +I+    +    EA   F EMR  G  P + T+  L  A      ++ G +   
Sbjct: 405 LVSWNGIIAAYAHHGYGKEAINFFKEMRKSGFKPDDVTYVGLLSACSHAGLVEEGLKYFD 464

Query: 357 VLMKTESESDLILEN---CLISMYAKCGVIDNAYNIFSNMVSRDLVS-WNSMVMGFSHHG 412
            L+K    S L+ E+   CL+ +  + G +  A+     + ++     W +++ G + H 
Sbjct: 465 ELVK--DRSILVREDHYACLVDLCGRAGRLKEAFGFIERLETKPSARVWGALLAGCNVHA 522

Query: 413 LANETLKVFESMLESGTHP-NSVTFLGILSACSHAGLVSRGWELFNAMFDV-YKIQPG 468
                 +  + +LE    P N+ T+L + +  +  G       +   M D   K QPG
Sbjct: 523 NVKIGKQAAKKLLE--VEPENAGTYLLLSNIYASTGKWREAARVRLKMKDKGLKKQPG 578


>gi|356530157|ref|XP_003533650.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Glycine max]
          Length = 711

 Score =  450 bits (1158), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 237/579 (40%), Positives = 349/579 (60%), Gaps = 18/579 (3%)

Query: 17  SITKYSKRGFIDEAKALFQ--LMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVV 74
           +I  Y++ G +D A+ +F    +P R V S+NAM++ + +  +  EA  LFE+MP+RN V
Sbjct: 28  AIACYARNGQLDHARKVFDETPLPHRTVSSWNAMVAAYFEARQPREALLLFEKMPQRNTV 87

Query: 75  SWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKN 134
           SW  +I G    G + EAR++F+ MP+RNVVSW SMV G +RNG++ EA ++F  MP KN
Sbjct: 88  SWNGLISGHIKNGMLSEARRVFDTMPDRNVVSWTSMVRGYVRNGDVAEAERLFWHMPHKN 147

Query: 135 VISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPR 194
           V+SW  M+ G ++   + +A  LF+ M E++VV  T+MI GYC  G ++E   LF  MP+
Sbjct: 148 VVSWTVMLGGLLQEGRVDDARKLFDMMPEKDVVAVTNMIGGYCEEGRLDEARALFDEMPK 207

Query: 195 KNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEA 254
           +NVV+WTAM+ G+A NG    +  LF  M          N  S  +M+ GY   GR+ EA
Sbjct: 208 RNVVTWTAMVSGYARNGKVDVARKLFEVMP-------ERNEVSWTAMLLGYTHSGRMREA 260

Query: 255 QNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFV 314
            +LFD +PV+  +    MI G+   G+V  A  +F  M +RD   W+AMI    +    +
Sbjct: 261 SSLFDAMPVKPVVVCNEMIMGFGLNGEVDKARRVFKGMKERDNGTWSAMIKVYERKGYEL 320

Query: 315 EATYLFMEMRAHGV----PPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILE 370
           EA  LF  M+  G+    P L +  SV      + A++D G+Q+H  L+++E + DL + 
Sbjct: 321 EALGLFRRMQREGLALNFPSLISVLSVCV----SLASLDHGKQVHAQLVRSEFDQDLYVA 376

Query: 371 NCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTH 430
           + LI+MY KCG +  A  +F+    +D+V WNSM+ G+S HGL  E L VF  M  SG  
Sbjct: 377 SVLITMYVKCGNLVRAKQVFNRFPLKDVVMWNSMITGYSQHGLGEEALNVFHDMCSSGVP 436

Query: 431 PNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEE 490
           P+ VTF+G+LSACS++G V  G ELF  M   Y+++PG EHY  +++LLGRA ++ EA +
Sbjct: 437 PDDVTFIGVLSACSYSGKVKEGLELFETMKCKYQVEPGIEHYACLVDLLGRADQVNEAMK 496

Query: 491 FVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASG 550
            V ++P EPD  +WGALLGAC       ++AE A ++L +L+P NA  +V+L N+YA  G
Sbjct: 497 LVEKMPMEPDAIVWGALLGACR-THMKLDLAEVAVEKLAQLEPKNAGPYVLLSNMYAYKG 555

Query: 551 RHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGD 589
           R  +   LR  +  + V K+PGCSW+     + MF  GD
Sbjct: 556 RWRDVEVLREKIKARSVTKLPGCSWIEVEKKVHMFTGGD 594



 Score =  235 bits (599), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 140/412 (33%), Positives = 222/412 (53%), Gaps = 11/412 (2%)

Query: 7   PKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFE 66
           P   VV  TS +  Y + G + EA+ LF  MP +NVVS+  ML G LQ GR+ +AR+LF+
Sbjct: 113 PDRNVVSWTSMVRGYVRNGDVAEAERLFWHMPHKNVVSWTVMLGGLLQEGRVDDARKLFD 172

Query: 67  EMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKV 126
            MPE++VV+ T MI G  + GR+ EAR LF+EMP+RNVV+W +MV G  RNG+++ ARK+
Sbjct: 173 MMPEKDVVAVTNMIGGYCEEGRLDEARALFDEMPKRNVVTWTAMVSGYARNGKVDVARKL 232

Query: 127 FNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGY 186
           F  MP +N +SW AM+ GY     M EA  LF+ M  + VV    MI G+   GEV++  
Sbjct: 233 FEVMPERNEVSWTAMLLGYTHSGRMREASSLFDAMPVKPVVVCNEMIMGFGLNGEVDKAR 292

Query: 187 CLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYI 246
            +F+ M  ++  +W+AMI  +   G+  E+L LF  M+     G   N  S  S+++  +
Sbjct: 293 RVFKGMKERDNGTWSAMIKVYERKGYELEALGLFRRMQ---REGLALNFPSLISVLSVCV 349

Query: 247 RFGRLEEAQNLFDTVPVRDEISW-----TSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWT 301
               L+  + +   + VR E        + +I  Y+  G +  A  +F+  P +D V W 
Sbjct: 350 SLASLDHGKQVHAQL-VRSEFDQDLYVASVLITMYVKCGNLVRAKQVFNRFPLKDVVMWN 408

Query: 302 AMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQI-HCVLMK 360
           +MI+G  Q+ L  EA  +F +M + GVPP + TF  +  A   +  +  G ++   +  K
Sbjct: 409 SMITGYSQHGLGEEALNVFHDMCSSGVPPDDVTFIGVLSACSYSGKVKEGLELFETMKCK 468

Query: 361 TESESDLILENCLISMYAKCGVIDNAYNIFSNM-VSRDLVSWNSMVMGFSHH 411
            + E  +    CL+ +  +   ++ A  +   M +  D + W +++     H
Sbjct: 469 YQVEPGIEHYACLVDLLGRADQVNEAMKLVEKMPMEPDAIVWGALLGACRTH 520



 Score =  192 bits (487), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 128/432 (29%), Positives = 216/432 (50%), Gaps = 27/432 (6%)

Query: 83  LADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPI--KNVISWNA 140
           +  +GR    R +  ++  +   S +  +    RNG+L+ ARKVF+  P+  + V SWNA
Sbjct: 1   MGHSGRAILRRCMMLQVRLQCTTSSSYAIACYARNGQLDHARKVFDETPLPHRTVSSWNA 60

Query: 141 MIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSW 200
           M+A Y E     EA++LFE+M +RN V+W  +ISG+ + G + E   +F  MP +NVVSW
Sbjct: 61  MVAAYFEARQPREALLLFEKMPQRNTVSWNGLISGHIKNGMLSEARRVFDTMPDRNVVSW 120

Query: 201 TAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDT 260
           T+M+ G+  NG   E+  LF  M        + NV S   M+ G ++ GR+++A+ LFD 
Sbjct: 121 TSMVRGYVRNGDVAEAERLFWHMP-------HKNVVSWTVMLGGLLQEGRVDDARKLFDM 173

Query: 261 VPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLF 320
           +P +D ++ T+MI GY   G++  A  LF  MP R+ V WTAM+SG  +N     A  LF
Sbjct: 174 MPEKDVVAVTNMIGGYCEEGRLDEARALFDEMPKRNVVTWTAMVSGYARNGKVDVARKLF 233

Query: 321 MEMRAHGVPPLNAT--FSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYA 378
             M     P  N     ++L G   +    +       + +K      +++ N +I  + 
Sbjct: 234 EVM-----PERNEVSWTAMLLGYTHSGRMREASSLFDAMPVKP-----VVVCNEMIMGFG 283

Query: 379 KCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLG 438
             G +D A  +F  M  RD  +W++M+  +   G   E L +F  M   G   N  + + 
Sbjct: 284 LNGEVDKARRVFKGMKERDNGTWSAMIKVYERKGYELEALGLFRRMQREGLALNFPSLIS 343

Query: 439 ILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVS--MINLLGRAGKIKEAEEFVLRLP 496
           +LS C     +  G ++   +    + +   + YV+  +I +  + G +  A++   R P
Sbjct: 344 VLSVCVSLASLDHGKQVHAQLV---RSEFDQDLYVASVLITMYVKCGNLVRAKQVFNRFP 400

Query: 497 FEPDHRIWGALL 508
            + D  +W +++
Sbjct: 401 LK-DVVMWNSMI 411


>gi|297734304|emb|CBI15551.3| unnamed protein product [Vitis vinifera]
          Length = 685

 Score =  449 bits (1156), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 224/550 (40%), Positives = 339/550 (61%), Gaps = 8/550 (1%)

Query: 49  LSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWN 108
           L G ++   L  AR LF++MPER+VVSW AM+ G A  G V EA+++F+EMP +N +SWN
Sbjct: 37  LRGCVRYRNLRAARLLFDQMPERDVVSWNAMLSGYAQNGYVKEAKEIFDEMPCKNSISWN 96

Query: 109 SMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVT 168
            M+   ++NG + +AR++F S     +ISWN M+ GYV+   + +A  +F+ M ER+ V+
Sbjct: 97  GMLAAYVQNGRIEDARRLFESKADWELISWNCMMGGYVKRNRLVDARGIFDRMPERDEVS 156

Query: 169 WTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICD 228
           W +MISGY + GE+ E   LF   P ++V +WTAM+ G+  NG   E+  +F       D
Sbjct: 157 WNTMISGYAQNGELLEAQRLFEESPVRDVFTWTAMVSGYVQNGMLDEARRVF-------D 209

Query: 229 NGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYL 288
                N  S N++I GY++  R+++A+ LF+ +P ++  SW +MI GY   G ++ A   
Sbjct: 210 GMPEKNSVSWNAIIAGYVQCKRMDQARELFEAMPCQNVSSWNTMITGYAQNGDIAQARNF 269

Query: 289 FHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANI 348
           F  MP RD+++W A+I+G  Q+    EA +LF+EM+  G     +TF+         A +
Sbjct: 270 FDRMPQRDSISWAAIIAGYAQSGYGEEALHLFVEMKRDGERLNRSTFTSTLSTCAEIAAL 329

Query: 349 DLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGF 408
           +LG+Q+H  ++K   ES   + N L+ MY KCG ID+AY +F  +  +++VSWN+M+ G+
Sbjct: 330 ELGKQVHGRVVKAGLESGCYVGNALLVMYCKCGNIDDAYIVFEGIEEKEVVSWNTMIAGY 389

Query: 409 SHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPG 468
           + HG   E L +FESM ++G  P+ VT +G+LSACSH GLV +G E F +M   Y I   
Sbjct: 390 ARHGFGKEALMLFESMKKTGILPDDVTMVGVLSACSHTGLVDKGTEYFYSMTQDYGITAN 449

Query: 469 PEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRL 528
            +HY  MI+LLGRAG++ +A+  +  +PFEPD   WGALLGA     GN E+ E AAK +
Sbjct: 450 SKHYTCMIDLLGRAGRLDDAQNLMKNMPFEPDAATWGALLGASRI-HGNTELGEKAAKMI 508

Query: 529 LELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSG 588
            E++P N+  +V+L N+YAASGR  +  ++R+ M  +GV+KVPG SW+     I  F  G
Sbjct: 509 FEMEPDNSGMYVLLSNLYAASGRWGDVGRMRLRMRDRGVKKVPGYSWVEVQNKIHTFTVG 568

Query: 589 DKIPAQVAEI 598
           D +  +   I
Sbjct: 569 DSVHPERDRI 578



 Score =  266 bits (679), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 146/444 (32%), Positives = 240/444 (54%), Gaps = 42/444 (9%)

Query: 7   PKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFE 66
           P+  VV   + ++ Y++ G++ EAK +F  MP +N +S+N ML+ ++QNGR+ +ARRLFE
Sbjct: 57  PERDVVSWNAMLSGYAQNGYVKEAKEIFDEMPCKNSISWNGMLAAYVQNGRIEDARRLFE 116

Query: 67  -------------------------------EMPERNVVSWTAMICGLADAGRVCEARKL 95
                                           MPER+ VSW  MI G A  G + EA++L
Sbjct: 117 SKADWELISWNCMMGGYVKRNRLVDARGIFDRMPERDEVSWNTMISGYAQNGELLEAQRL 176

Query: 96  FEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAI 155
           FEE P R+V +W +MV G ++NG L+EAR+VF+ MP KN +SWNA+IAGYV+C  M +A 
Sbjct: 177 FEESPVRDVFTWTAMVSGYVQNGMLDEARRVFDGMPEKNSVSWNAIIAGYVQCKRMDQAR 236

Query: 156 VLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKE 215
            LFE M  +NV +W +MI+GY + G++ +    F RMP+++ +SW A+I G+A +G+ +E
Sbjct: 237 ELFEAMPCQNVSSWNTMITGYAQNGDIAQARNFFDRMPQRDSISWAAIIAGYAQSGYGEE 296

Query: 216 SLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEIS-----WT 270
           +L LF+EMK    +G   N  +  S ++       LE  + +   V V+  +        
Sbjct: 297 ALHLFVEMK---RDGERLNRSTFTSTLSTCAEIAALELGKQVHGRV-VKAGLESGCYVGN 352

Query: 271 SMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPP 330
           +++  Y   G + +AY +F  + +++ V+W  MI+G  ++    EA  LF  M+  G+ P
Sbjct: 353 ALLVMYCKCGNIDDAYIVFEGIEEKEVVSWNTMIAGYARHGFGKEALMLFESMKKTGILP 412

Query: 331 LNATFSVLFGAAGATANIDLGRQ-IHCVLMKTESESDLILENCLISMYAKCGVIDNAYNI 389
            + T   +  A   T  +D G +  + +       ++     C+I +  + G +D+A N+
Sbjct: 413 DDVTMVGVLSACSHTGLVDKGTEYFYSMTQDYGITANSKHYTCMIDLLGRAGRLDDAQNL 472

Query: 390 FSNM-VSRDLVSWNSMVMGFSHHG 412
             NM    D  +W +++     HG
Sbjct: 473 MKNMPFEPDAATWGALLGASRIHG 496



 Score =  194 bits (494), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 125/366 (34%), Positives = 182/366 (49%), Gaps = 79/366 (21%)

Query: 7   PKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFE 66
           P+   V   + I+ Y++ G + EA+ LF+  P R+V ++ AM+SG++QNG L EARR+F+
Sbjct: 150 PERDEVSWNTMISGYAQNGELLEAQRLFEESPVRDVFTWTAMVSGYVQNGMLDEARRVFD 209

Query: 67  EMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKV 126
            MPE+N VSW A+I G     R+ +AR+LFE MP +NV SWN+M+ G  +NG++ +AR  
Sbjct: 210 GMPEKNSVSWNAIIAGYVQCKRMDQARELFEAMPCQNVSSWNTMITGYAQNGDIAQARNF 269

Query: 127 FNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEM----EERNVVTWTSMISG------- 175
           F+ MP ++ ISW A+IAGY +     EA+ LF EM    E  N  T+TS +S        
Sbjct: 270 FDRMPQRDSISWAAIIAGYAQSGYGEEALHLFVEMKRDGERLNRSTFTSTLSTCAEIAAL 329

Query: 176 ----------------------------YCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGF 207
                                       YC+ G +++ Y +F  +  K VVSW  MI G+
Sbjct: 330 ELGKQVHGRVVKAGLESGCYVGNALLVMYCKCGNIDDAYIVFEGIEEKEVVSWNTMIAGY 389

Query: 208 AWNGFHKESLLLFIEMK---------------------GICDNGN------------NCN 234
           A +GF KE+L+LF  MK                     G+ D G               N
Sbjct: 390 ARHGFGKEALMLFESMKKTGILPDDVTMVGVLSACSHTGLVDKGTEYFYSMTQDYGITAN 449

Query: 235 VQSCNSMINGYIRFGRLEEAQNLFDTVPVR-DEISW-----TSMIDGYLSVGQVSNAYYL 288
            +    MI+   R GRL++AQNL   +P   D  +W      S I G   +G+ + A  +
Sbjct: 450 SKHYTCMIDLLGRAGRLDDAQNLMKNMPFEPDAATWGALLGASRIHGNTELGEKA-AKMI 508

Query: 289 FHNMPD 294
           F   PD
Sbjct: 509 FEMEPD 514


>gi|414885035|tpg|DAA61049.1| TPA: hypothetical protein ZEAMMB73_995105 [Zea mays]
          Length = 824

 Score =  446 bits (1147), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 231/623 (37%), Positives = 358/623 (57%), Gaps = 39/623 (6%)

Query: 7   PKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEA----- 61
           P   V+    +IT + + G + +A+ LF  MP+R+  +YN ML+G+  NGRL +A     
Sbjct: 103 PDMEVIRRNRAITAHMRAGRVPDAERLFAAMPRRSTSTYNTMLAGYAANGRLPQALSFFR 162

Query: 62  --------------------------RRLFEEMPERNVVSWTAMICGLADAGRVCEARKL 95
                                     R LF+EMP ++ VS+  MI   A+ G V  AR  
Sbjct: 163 SIPRPDSFSYNTLLHALGVSSSLADVRALFDEMPVKDSVSYNVMISSHANHGLVSLARHY 222

Query: 96  FEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAI 155
           F+  PE++ VSWN M+   +RNG + EAR++F+S    + ISWNA++AGYV+   + EA 
Sbjct: 223 FDLAPEKDAVSWNGMLAAYVRNGRIQEARELFDSRTEWDAISWNALMAGYVQRSQIEEAQ 282

Query: 156 VLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKE 215
            +F +M +R+VV+W +M+SGY R G++ E   LF   P ++V +WTA++ G+A NG  +E
Sbjct: 283 KMFNKMPQRDVVSWNTMVSGYARRGDMAEARRLFDVAPIRDVFTWTAIVSGYAQNGMLEE 342

Query: 216 SLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDG 275
           +  +F  M        + N  S N+M+  Y++   +EEA+ LFD +P R+  SW +M+ G
Sbjct: 343 AKRVFDAMP-------DKNAVSWNAMMAAYVQRRMMEEAKELFDAMPCRNVASWNTMLTG 395

Query: 276 YLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATF 335
           Y   G +  A  +F  MP +DAV+W AM++   Q     E   LF EM   G     + F
Sbjct: 396 YAQAGMLDEARAIFGMMPQKDAVSWAAMLAAYSQIGFSEETLQLFKEMGRCGEWVNRSAF 455

Query: 336 SVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVS 395
           + +       A ++ G Q+H  L+K        + N L++MY KCG ++ A++ F  M  
Sbjct: 456 ACVLSTCADIAALECGMQLHSRLIKAGYGVGCFVGNALLAMYFKCGSMEEAHSAFEEMEE 515

Query: 396 RDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWEL 455
           RD+VSWN+M+ G++ HG   E L+VF++M ++ T P+ +T +G+L+ACSH+GLV +G   
Sbjct: 516 RDVVSWNTMIAGYARHGFGKEALEVFDTMRKTSTKPDDITLVGVLAACSHSGLVEKGISY 575

Query: 456 FNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCE 515
           F +M   + +   PEHY  MI+LLGRAG++ EA   +  +PFEPD  +WGALLGA     
Sbjct: 576 FYSMHRDFGVATKPEHYTCMIDLLGRAGRLDEAVNLMKDMPFEPDSTMWGALLGASRI-H 634

Query: 516 GNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSW 575
            N+E+  +AA+++ EL+P NA  +V+L NIYA+SG+  +  K+R  M  +GV+KVPG SW
Sbjct: 635 RNSELGRNAAEKIFELEPENAGMYVLLSNIYASSGKWRDVDKMRHIMHERGVKKVPGFSW 694

Query: 576 LMRNGGIQMFLSGDKIPAQVAEI 598
           +     +  F  GD +  +  +I
Sbjct: 695 IEVQNKVHTFSVGDSVHPEREDI 717


>gi|297609253|ref|NP_001062888.2| Os09g0327200 [Oryza sativa Japonica Group]
 gi|255678787|dbj|BAF24802.2| Os09g0327200 [Oryza sativa Japonica Group]
          Length = 739

 Score =  444 bits (1143), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 232/619 (37%), Positives = 356/619 (57%), Gaps = 39/619 (6%)

Query: 11  VVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRL------------ 58
           V+    +IT + + G + +A+ LF  MP+R+  +YNAML+G+  NGRL            
Sbjct: 38  VIRSNKAITAHMRAGRVADAERLFAAMPRRSTSTYNAMLAGYSANGRLPLAASLFRAIPR 97

Query: 59  -------------------SEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEM 99
                              ++AR LF+EMP R+ V++  MI   A+ G V  AR  F+  
Sbjct: 98  PDNYSYNTLLHALAVSSSLADARGLFDEMPVRDSVTYNVMISSHANHGLVSLARHYFDLA 157

Query: 100 PERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFE 159
           PE++ VSWN M+   +RNG + EAR +FNS    +VISWNA+++GYV+   M EA  LF+
Sbjct: 158 PEKDAVSWNGMLAAYVRNGRVEEARGLFNSRTEWDVISWNALMSGYVQWGKMSEARELFD 217

Query: 160 EMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLL 219
            M  R+VV+W  M+SGY R G++ E   LF   P ++V +WTA++ G+A NG  +E+  +
Sbjct: 218 RMPGRDVVSWNIMVSGYARRGDMVEARRLFDAAPVRDVFTWTAVVSGYAQNGMLEEARRV 277

Query: 220 FIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSV 279
           F  M          N  S N+M+  YI+   ++EA+ LF+ +P R+  SW +M+ GY   
Sbjct: 278 FDAMP-------ERNAVSWNAMVAAYIQRRMMDEAKELFNMMPCRNVASWNTMLTGYAQA 330

Query: 280 GQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLF 339
           G +  A  +F  MP +DAV+W AM++   Q     E   LF+EM   G     + F+ + 
Sbjct: 331 GMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVL 390

Query: 340 GAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLV 399
                 A ++ G Q+H  L++        + N L++MY KCG +++A N F  M  RD+V
Sbjct: 391 STCADIAALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCGNMEDARNAFEEMEERDVV 450

Query: 400 SWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAM 459
           SWN+M+ G++ HG   E L++F+ M  + T P+ +T +G+L+ACSH+GLV +G   F +M
Sbjct: 451 SWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLVGVLAACSHSGLVEKGISYFYSM 510

Query: 460 FDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAE 519
              + +   PEHY  MI+LLGRAG++ EA + +  +PFEPD  +WGALLGA      N E
Sbjct: 511 HHDFGVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDMPFEPDSTMWGALLGASRI-HRNPE 569

Query: 520 IAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRN 579
           +   AA+++ EL+P NA  +V+L NIYA+SG+  +  K+R+ M  +GV+KVPG SW+   
Sbjct: 570 LGRSAAEKIFELEPENAGMYVLLSNIYASSGKWRDARKMRVMMEERGVKKVPGFSWIEVQ 629

Query: 580 GGIQMFLSGDKIPAQVAEI 598
             +  F +GD +  +  +I
Sbjct: 630 NKVHTFSAGDCVHPEKEKI 648


>gi|357506719|ref|XP_003623648.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498663|gb|AES79866.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 707

 Score =  444 bits (1141), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 234/577 (40%), Positives = 349/577 (60%), Gaps = 11/577 (1%)

Query: 15  TSSITKYSKRGFIDEAKALFQ--LMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERN 72
           TS+I++Y + G I  A+ +F    +PQR + S+NAM+S + ++ +  +A  LF++MP+RN
Sbjct: 23  TSAISRYGRIGDIHNARKVFDNTPLPQRTIASWNAMVSAYFESHKPRDALLLFDQMPQRN 82

Query: 73  VVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPI 132
            VS+  MI G    G V +ARK+F+ MPERNVVSW SMV G ++ G + EA K+F  MP 
Sbjct: 83  TVSFNGMISGYVKNGMVADARKVFDVMPERNVVSWTSMVRGYVQEGMVEEAEKLFWEMPR 142

Query: 133 KNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRM 192
           +NV+SW  MI G ++   + +A  LF+ + E++VV  T+MI GYC+ G ++E   LF  M
Sbjct: 143 RNVVSWTVMIGGLLKESRIDDAKKLFDMIPEKDVVVVTNMIGGYCQVGRLDEARELFDEM 202

Query: 193 PRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLE 252
             +NV +WT M+ G+A NG    +  LF  M          N  S  +M+ GY + GR++
Sbjct: 203 KVRNVFTWTTMVSGYAKNGRVDVARKLFEVMP-------ERNEVSWTAMLMGYTQSGRMK 255

Query: 253 EAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNEL 312
           EA  LF+ +PV+  ++   MI  +   G++  A  +F  M +RD   W AMI    +  L
Sbjct: 256 EAFELFEAMPVKWIVACNEMILQFGLAGEMHRARMMFEGMKERDEGTWNAMIKVFERKGL 315

Query: 313 FVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENC 372
            +EA  LF  M+  GV     +   +     + A++D GRQ+H  L+++E + DL + + 
Sbjct: 316 DLEALGLFARMQREGVALNFPSMISVLSVCASLASLDHGRQVHARLVRSEFDQDLYVASV 375

Query: 373 LISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPN 432
           LI+MY KCG +  A  IF+  + +D+V WNSM+ G+S HGL  E L VF  M  SG  P+
Sbjct: 376 LITMYVKCGDLVRAKGIFNRFLFKDVVMWNSMITGYSQHGLGEEALNVFHDMCSSGVQPD 435

Query: 433 SVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFV 492
            VTF+G+LSACS++G V  G+E+F AM   Y+++PG EHY  M++LLGRAG++ EA E V
Sbjct: 436 EVTFIGVLSACSYSGKVKEGFEIFEAMKCTYQVEPGIEHYACMVDLLGRAGRVDEAMELV 495

Query: 493 LRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRH 552
            ++P EPD  +WGALLGAC       ++AE A ++L +L+P NA  +V+L ++YA  GR 
Sbjct: 496 EKMPMEPDAIVWGALLGACR-NHMKLDLAEVAVEKLAKLEPKNAGPYVLLSHMYATKGRW 554

Query: 553 VEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGD 589
            +   LR  +  + V K PGCSW+     + MF  GD
Sbjct: 555 RDVEVLRKKINRR-VIKFPGCSWIEVEKKVHMFTGGD 590



 Score =  182 bits (461), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 138/446 (30%), Positives = 206/446 (46%), Gaps = 93/446 (20%)

Query: 102 RNVVSWNSMVVGLIRNGELNEARKVFNS-------------------------------- 129
           R++ S  S +    R G+++ ARKVF++                                
Sbjct: 17  RSLCSNTSAISRYGRIGDIHNARKVFDNTPLPQRTIASWNAMVSAYFESHKPRDALLLFD 76

Query: 130 -MPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCL 188
            MP +N +S+N MI+GYV+  M+ +A  +F+ M ERNVV+WTSM+ GY + G VEE   L
Sbjct: 77  QMPQRNTVSFNGMISGYVKNGMVADARKVFDVMPERNVVSWTSMVRGYVQEGMVEEAEKL 136

Query: 189 FRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRF 248
           F  MPR+NVVSWT MIGG       KES +   + K + D     +V    +MI GY + 
Sbjct: 137 FWEMPRRNVVSWTVMIGGLL-----KESRI--DDAKKLFDMIPEKDVVVVTNMIGGYCQV 189

Query: 249 GRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLV 308
           GRL+EA+ LFD + VR+  +WT+M+ GY   G+V  A  LF  MP+R+ V+WTAM+ G  
Sbjct: 190 GRLDEARELFDEMKVRNVFTWTTMVSGYAKNGRVDVARKLFEVMPERNEVSWTAMLMGYT 249

Query: 309 QNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLI 368
           Q+    EA  LF  M    +   N    + FG AG         ++H             
Sbjct: 250 QSGRMKEAFELFEAMPVKWIVACNEMI-LQFGLAG---------EMH------------- 286

Query: 369 LENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESG 428
                            A  +F  M  RD  +WN+M+  F   GL  E L +F  M   G
Sbjct: 287 ----------------RARMMFEGMKERDEGTWNAMIKVFERKGLDLEALGLFARMQREG 330

Query: 429 THPNSVTFLGILSACSHAGLVSRGWE----LFNAMFDVYKIQPGPEHYVS--MINLLGRA 482
              N  + + +LS C+    +  G +    L  + FD        + YV+  +I +  + 
Sbjct: 331 VALNFPSMISVLSVCASLASLDHGRQVHARLVRSEFD-------QDLYVASVLITMYVKC 383

Query: 483 GKIKEAEEFVLRLPFEPDHRIWGALL 508
           G +  A+    R  F+ D  +W +++
Sbjct: 384 GDLVRAKGIFNRFLFK-DVVMWNSMI 408



 Score = 48.1 bits (113), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 39/117 (33%), Positives = 60/117 (51%), Gaps = 11/117 (9%)

Query: 11  VVHLTSSITKYSKRGFIDEAKALFQLM----PQRNVVSYNAMLSGFLQNGRLSEARRLFE 66
           VV   S IT YS+ G  +EA  +F  M     Q + V++  +LS    +G++ E   +FE
Sbjct: 401 VVMWNSMITGYSQHGLGEEALNVFHDMCSSGVQPDEVTFIGVLSACSYSGKVKEGFEIFE 460

Query: 67  EMP-----ERNVVSWTAMICGLADAGRVCEARKLFEEMP-ERNVVSWNSMVVGLIRN 117
            M      E  +  +  M+  L  AGRV EA +L E+MP E + + W ++ +G  RN
Sbjct: 461 AMKCTYQVEPGIEHYACMVDLLGRAGRVDEAMELVEKMPMEPDAIVWGAL-LGACRN 516


>gi|48716903|dbj|BAD23598.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
          Length = 755

 Score =  443 bits (1140), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 232/619 (37%), Positives = 356/619 (57%), Gaps = 39/619 (6%)

Query: 11  VVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRL------------ 58
           V+    +IT + + G + +A+ LF  MP+R+  +YNAML+G+  NGRL            
Sbjct: 38  VIRSNKAITAHMRAGRVADAERLFAAMPRRSTSTYNAMLAGYSANGRLPLAASLFRAIPR 97

Query: 59  -------------------SEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEM 99
                              ++AR LF+EMP R+ V++  MI   A+ G V  AR  F+  
Sbjct: 98  PDNYSYNTLLHALAVSSSLADARGLFDEMPVRDSVTYNVMISSHANHGLVSLARHYFDLA 157

Query: 100 PERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFE 159
           PE++ VSWN M+   +RNG + EAR +FNS    +VISWNA+++GYV+   M EA  LF+
Sbjct: 158 PEKDAVSWNGMLAAYVRNGRVEEARGLFNSRTEWDVISWNALMSGYVQWGKMSEARELFD 217

Query: 160 EMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLL 219
            M  R+VV+W  M+SGY R G++ E   LF   P ++V +WTA++ G+A NG  +E+  +
Sbjct: 218 RMPGRDVVSWNIMVSGYARRGDMVEARRLFDAAPVRDVFTWTAVVSGYAQNGMLEEARRV 277

Query: 220 FIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSV 279
           F  M          N  S N+M+  YI+   ++EA+ LF+ +P R+  SW +M+ GY   
Sbjct: 278 FDAMP-------ERNAVSWNAMVAAYIQRRMMDEAKELFNMMPCRNVASWNTMLTGYAQA 330

Query: 280 GQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLF 339
           G +  A  +F  MP +DAV+W AM++   Q     E   LF+EM   G     + F+ + 
Sbjct: 331 GMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVL 390

Query: 340 GAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLV 399
                 A ++ G Q+H  L++        + N L++MY KCG +++A N F  M  RD+V
Sbjct: 391 STCADIAALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCGNMEDARNAFEEMEERDVV 450

Query: 400 SWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAM 459
           SWN+M+ G++ HG   E L++F+ M  + T P+ +T +G+L+ACSH+GLV +G   F +M
Sbjct: 451 SWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLVGVLAACSHSGLVEKGISYFYSM 510

Query: 460 FDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAE 519
              + +   PEHY  MI+LLGRAG++ EA + +  +PFEPD  +WGALLGA      N E
Sbjct: 511 HHDFGVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDMPFEPDSTMWGALLGASRI-HRNPE 569

Query: 520 IAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRN 579
           +   AA+++ EL+P NA  +V+L NIYA+SG+  +  K+R+ M  +GV+KVPG SW+   
Sbjct: 570 LGRSAAEKIFELEPENAGMYVLLSNIYASSGKWRDARKMRVMMEERGVKKVPGFSWIEVQ 629

Query: 580 GGIQMFLSGDKIPAQVAEI 598
             +  F +GD +  +  +I
Sbjct: 630 NKVHTFSAGDCVHPEKEKI 648


>gi|125563252|gb|EAZ08632.1| hypothetical protein OsI_30906 [Oryza sativa Indica Group]
          Length = 755

 Score =  442 bits (1137), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 231/619 (37%), Positives = 355/619 (57%), Gaps = 39/619 (6%)

Query: 11  VVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRL------------ 58
           V+    +IT + + G + +A+ LF  MP+R+  +YNAML+G+  NGRL            
Sbjct: 38  VIRSNKAITAHMRAGRVADAERLFAAMPRRSTSTYNAMLAGYSANGRLPLAASLFRAIPR 97

Query: 59  -------------------SEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEM 99
                              ++AR LF+EMP R+ V++  MI   A+ G V  AR  F+  
Sbjct: 98  PDNYSYNTLLHALAVSSSLADARGLFDEMPVRDSVTYNVMISSHANHGLVSLARHYFDLA 157

Query: 100 PERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFE 159
           PE++ VSWN M+   +RNG + EAR +FNS    + ISWNA+++GYV+   M EA  LF+
Sbjct: 158 PEKDAVSWNGMLAAYVRNGRVEEARGLFNSRTEWDAISWNALMSGYVQWGKMSEARELFD 217

Query: 160 EMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLL 219
            M  R+VV+W  M+SGY R G++ E   LF   P ++V +WTA++ G+A NG  +E+  +
Sbjct: 218 RMPGRDVVSWNIMVSGYARRGDMVEARRLFDAAPVRDVFTWTAVVSGYAQNGMLEEARRV 277

Query: 220 FIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSV 279
           F  M          N  S N+M+  YI+   ++EA+ LF+ +P R+  SW +M+ GY   
Sbjct: 278 FDAMP-------ERNAVSWNAMVAAYIQRRMMDEAKELFNMMPCRNVASWNTMLTGYAQA 330

Query: 280 GQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLF 339
           G +  A  +F  MP +DAV+W AM++   Q     E   LF+EM   G     + F+ + 
Sbjct: 331 GMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVL 390

Query: 340 GAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLV 399
                 A ++ G Q+H  L++        + N L++MY KCG +++A N F  M  RD+V
Sbjct: 391 STCADIAALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCGNMEDARNAFEEMEERDVV 450

Query: 400 SWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAM 459
           SWN+M+ G++ HG   E L++F+ M  + T P+ +T +G+L+ACSH+GLV +G   F +M
Sbjct: 451 SWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLVGVLAACSHSGLVEKGISYFYSM 510

Query: 460 FDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAE 519
              + +   PEHY  MI+LLGRAG++ EA + +  +PFEPD  +WGALLGA      N E
Sbjct: 511 HHDFGVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDMPFEPDSTMWGALLGASRI-HRNPE 569

Query: 520 IAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRN 579
           +   AA+++ EL+P NA  +V+L NIYA+SG+  +  K+R+ M  +GV+KVPG SW+   
Sbjct: 570 LGRSAAEKIFELEPENAGMYVLLSNIYASSGKWRDARKMRVMMEERGVKKVPGFSWIEVQ 629

Query: 580 GGIQMFLSGDKIPAQVAEI 598
             +  F +GD +  +  +I
Sbjct: 630 NKVHTFSAGDCVHPEKEKI 648


>gi|296084001|emb|CBI24389.3| unnamed protein product [Vitis vinifera]
          Length = 665

 Score =  441 bits (1134), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 235/644 (36%), Positives = 369/644 (57%), Gaps = 69/644 (10%)

Query: 2   SERNHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEA 61
           ++ N     +VH  S ITK+ + G + EA+++F  MP +N +S+ AML+ + +NG +++A
Sbjct: 22  TQGNRTTKFLVHCHSQITKHGRNGDLKEAESIFSRMPHKNAISWTAMLTAYYENGHIAKA 81

Query: 62  RRLFEEMPERNVVSWTAMICGLADAG--RVCEARKLFEEMPERNVVSWNSMVVGLIRNG- 118
           R++FE+MP+R   S+ AMI     +    + EA KLF EM ERN +S+ +M+ GL R G 
Sbjct: 82  RKMFEKMPQRTTASYNAMITAYTRSNPMMIGEASKLFAEMRERNSISYAAMITGLARAGM 141

Query: 119 --------------------------------ELNEARKVFNSMPIKNVISWNAMIAGYV 146
                                            L EA ++F  M  ++VISW++M+ GY 
Sbjct: 142 VDNAEELYLETPVEWRDPVCSNALISGYLKVGRLEEATRIFEGMGERDVISWSSMVDGYC 201

Query: 147 ECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRK-----NVVSWT 201
           +   +G A  LFE M ERNVVTWT+MI G+ + G  E G+ LF RM ++     N  + T
Sbjct: 202 KKGKIGHARELFERMPERNVVTWTAMIDGHMKMGCYEVGFGLFLRMRKEGFVKVNPTTLT 261

Query: 202 AMIG---------------------GFAWNGFHKESLLLF-------IEMKGICDNGNNC 233
            M                       GF ++ F   ++++        +E + I D  N  
Sbjct: 262 VMFEACSEFGEYKEGIQMHGLVSRMGFEFDVFLGNAIIIMYCRFSFVVEARKIFDMMNRK 321

Query: 234 NVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMP 293
           +V S N++I GY++   +EE   LF+    +D ISWT+MI G+ + G++  +  LF  MP
Sbjct: 322 DVVSWNALIAGYVQNDEVEEGYVLFEKTQQKDVISWTTMITGFSNKGKMGKSIELFRMMP 381

Query: 294 DRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQ 353
            +D +AWTA+ISG V N  + EA Y F+EM    V P   T S +  A+   A ++ G Q
Sbjct: 382 KQDDIAWTAVISGFVGNGEYEEAIYWFIEMLRKVVRPNPLTLSSVLSASAGLATLNQGLQ 441

Query: 354 IHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGL 413
           IH +++K   E DL ++N L+SMY KCG + + + IF+++ S ++VS+NSM+ GF+ +G 
Sbjct: 442 IHTLVVKMGMEFDLSIQNSLVSMYTKCGNVADGHQIFTSINSPNIVSFNSMITGFAQNGF 501

Query: 414 ANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYV 473
             E L++F  ML  G  PN +TFLG+LSAC+H GL+ +GW  F +M  +Y+I+PGP HY 
Sbjct: 502 GEEALELFHKMLNEGQKPNEITFLGVLSACTHVGLLEQGWNYFKSMKSLYQIEPGPHHYA 561

Query: 474 SMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDP 533
            +++LLGRAG + +A + +  +P EP   +WGALLGA        ++A+ AA+++ +L+P
Sbjct: 562 CIVDLLGRAGFLDDAIDLIRSMPCEPHSGVWGALLGASRI-HLRLDVAKLAAQQIFKLEP 620

Query: 534 LNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLM 577
            NA  + VL  +Y+++GR+ +  ++RM  GLKGV+K  G SW++
Sbjct: 621 DNAAPYAVLSFLYSSAGRNRDSEQVRMAQGLKGVKKSAGYSWII 664


>gi|359479080|ref|XP_003632211.1| PREDICTED: pentatricopeptide repeat-containing protein At1g53600,
           mitochondrial [Vitis vinifera]
          Length = 744

 Score =  441 bits (1133), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 235/644 (36%), Positives = 369/644 (57%), Gaps = 69/644 (10%)

Query: 2   SERNHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEA 61
           ++ N     +VH  S ITK+ + G + EA+++F  MP +N +S+ AML+ + +NG +++A
Sbjct: 101 TQGNRTTKFLVHCHSQITKHGRNGDLKEAESIFSRMPHKNAISWTAMLTAYYENGHIAKA 160

Query: 62  RRLFEEMPERNVVSWTAMICGLADAG--RVCEARKLFEEMPERNVVSWNSMVVGLIRNG- 118
           R++FE+MP+R   S+ AMI     +    + EA KLF EM ERN +S+ +M+ GL R G 
Sbjct: 161 RKMFEKMPQRTTASYNAMITAYTRSNPMMIGEASKLFAEMRERNSISYAAMITGLARAGM 220

Query: 119 --------------------------------ELNEARKVFNSMPIKNVISWNAMIAGYV 146
                                            L EA ++F  M  ++VISW++M+ GY 
Sbjct: 221 VDNAEELYLETPVEWRDPVCSNALISGYLKVGRLEEATRIFEGMGERDVISWSSMVDGYC 280

Query: 147 ECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRK-----NVVSWT 201
           +   +G A  LFE M ERNVVTWT+MI G+ + G  E G+ LF RM ++     N  + T
Sbjct: 281 KKGKIGHARELFERMPERNVVTWTAMIDGHMKMGCYEVGFGLFLRMRKEGFVKVNPTTLT 340

Query: 202 AMIG---------------------GFAWNGFHKESLLLF-------IEMKGICDNGNNC 233
            M                       GF ++ F   ++++        +E + I D  N  
Sbjct: 341 VMFEACSEFGEYKEGIQMHGLVSRMGFEFDVFLGNAIIIMYCRFSFVVEARKIFDMMNRK 400

Query: 234 NVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMP 293
           +V S N++I GY++   +EE   LF+    +D ISWT+MI G+ + G++  +  LF  MP
Sbjct: 401 DVVSWNALIAGYVQNDEVEEGYVLFEKTQQKDVISWTTMITGFSNKGKMGKSIELFRMMP 460

Query: 294 DRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQ 353
            +D +AWTA+ISG V N  + EA Y F+EM    V P   T S +  A+   A ++ G Q
Sbjct: 461 KQDDIAWTAVISGFVGNGEYEEAIYWFIEMLRKVVRPNPLTLSSVLSASAGLATLNQGLQ 520

Query: 354 IHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGL 413
           IH +++K   E DL ++N L+SMY KCG + + + IF+++ S ++VS+NSM+ GF+ +G 
Sbjct: 521 IHTLVVKMGMEFDLSIQNSLVSMYTKCGNVADGHQIFTSINSPNIVSFNSMITGFAQNGF 580

Query: 414 ANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYV 473
             E L++F  ML  G  PN +TFLG+LSAC+H GL+ +GW  F +M  +Y+I+PGP HY 
Sbjct: 581 GEEALELFHKMLNEGQKPNEITFLGVLSACTHVGLLEQGWNYFKSMKSLYQIEPGPHHYA 640

Query: 474 SMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDP 533
            +++LLGRAG + +A + +  +P EP   +WGALLGA        ++A+ AA+++ +L+P
Sbjct: 641 CIVDLLGRAGFLDDAIDLIRSMPCEPHSGVWGALLGASRI-HLRLDVAKLAAQQIFKLEP 699

Query: 534 LNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLM 577
            NA  + VL  +Y+++GR+ +  ++RM  GLKGV+K  G SW++
Sbjct: 700 DNAAPYAVLSFLYSSAGRNRDSEQVRMAQGLKGVKKSAGYSWII 743


>gi|359477774|ref|XP_002282129.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Vitis vinifera]
          Length = 691

 Score =  440 bits (1132), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 237/619 (38%), Positives = 354/619 (57%), Gaps = 42/619 (6%)

Query: 14  LTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNV 73
           L S I+   + GF +EA+ LF  MPQRN V+YNAM+ G+ QNG   E   LF+EMPER++
Sbjct: 44  LNSRISDCMRNGFTEEAQMLFDEMPQRNTVTYNAMIRGYFQNGHFGEGVSLFDEMPERDI 103

Query: 74  VSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIK 133
            S+  MI GL   G +  A ++F++MP R+VVSWNSM+ G + NG + EA +VF+ M +K
Sbjct: 104 FSYNTMIAGLMKFGDINGASEIFQKMPFRDVVSWNSMISGYVSNGLIGEALRVFSGMVLK 163

Query: 134 NVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMP 193
           +V+SWN +IAG V    +  A   F+EM  R++ +WT+MISG   AG + E   LF  MP
Sbjct: 164 DVVSWNLVIAGLVGVGKVDLAEEFFKEMGTRDIASWTTMISGLASAGRIVEARGLFEDMP 223

Query: 194 RKNVVSWTAMIGGFAWNG--------FHK-----------------------ESLLLFIE 222
            ++V +W  MI G+  NG        F K                       +++ LF+E
Sbjct: 224 VRDVRAWNTMIAGYIENGCIEIGEVLFQKMPQRDFRSWNEMINGLVRNQRIQDAMRLFVE 283

Query: 223 MKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQV 282
           M   C        +S NS++ G IR G ++EA    +  P  D +SWT++I GY   G+V
Sbjct: 284 MPQKCR-------RSWNSIVFGLIRNGLIKEAHAFLEKSPFSDTVSWTNLIVGYFETGEV 336

Query: 283 SNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAA 342
             A  +F  MP RDA AW  +I GL +N+   E    F++M+  G  P  ATF+ +    
Sbjct: 337 DTAVSIFELMPARDATAWNVIIWGLGENDHGEEGLKFFVKMKEGGPFPDEATFTSVLTIC 396

Query: 343 GATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWN 402
                + LGRQIH  + KT     + + N ++++YA+CG  ++A  +FS M S D +SWN
Sbjct: 397 SDLPTLHLGRQIHAQVTKTGFNYFVAVSNAMVTLYARCGNSNSALLLFSAMRSHDFISWN 456

Query: 403 SMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDV 462
           S++ G +H+G   E ++VFE M      PN +TF+G+LSACSHAGLV +G   F+ M   
Sbjct: 457 SIICGLAHNGNGVEAIEVFEKMRSIDIKPNHITFVGVLSACSHAGLVDQGKYYFDFMKYK 516

Query: 463 YKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLP---FEPDHRIWGALLGACGFCEGNAE 519
             ++P  EHY  +++LLGR G I EA  F+ ++     E    +WGA+LGAC   + N +
Sbjct: 517 CCLEPTIEHYTCIVDLLGRFGLIDEAMSFLRQMEANGVEVPASVWGAVLGACRIHK-NMQ 575

Query: 520 IAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRN 579
           + E A +R+LE++P N+  +++L  +Y +SG+  +  ++ + M  KGV+K P CSW+  N
Sbjct: 576 VGEIAGERILEIEPHNSGVYIILAEMYLSSGKREDAERVWVRMREKGVKKQPACSWMEVN 635

Query: 580 GGIQMFLSGDKIPAQVAEI 598
           G   +FLSGD    Q + +
Sbjct: 636 GSGHVFLSGDSSHPQFSRV 654



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 84/297 (28%), Positives = 130/297 (43%), Gaps = 31/297 (10%)

Query: 234 NVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMP 293
           N++  NS I+  +R G  EEAQ LFD +P R+ +++ +MI GY   G       LF  MP
Sbjct: 40  NLKPLNSRISDCMRNGFTEEAQMLFDEMPQRNTVTYNAMIRGYFQNGHFGEGVSLFDEMP 99

Query: 294 DRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQ 353
           +RD  ++  MI+GL++      A+ +F +M    V   N+  S      G  +N  +G  
Sbjct: 100 ERDIFSYNTMIAGLMKFGDINGASEIFQKMPFRDVVSWNSMIS------GYVSNGLIGEA 153

Query: 354 IHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGL 413
           +   +       D++  N +I+     G +D A   F  M +RD+ SW +M+ G +  G 
Sbjct: 154 LR--VFSGMVLKDVVSWNLVIAGLVGVGKVDLAEEFFKEMGTRDIASWTTMISGLASAGR 211

Query: 414 ANETLKVFESMLESGTHPNSVTFLG-ILSACSHAGLV---------SRGW-ELFNAMFDV 462
             E   +FE M        +    G I + C   G V          R W E+ N +   
Sbjct: 212 IVEARGLFEDMPVRDVRAWNTMIAGYIENGCIEIGEVLFQKMPQRDFRSWNEMINGLVRN 271

Query: 463 YKIQPGPEHYV-----------SMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALL 508
            +IQ     +V           S++  L R G IKEA  F+ + PF  D   W  L+
Sbjct: 272 QRIQDAMRLFVEMPQKCRRSWNSIVFGLIRNGLIKEAHAFLEKSPFS-DTVSWTNLI 327


>gi|449463631|ref|XP_004149535.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Cucumis sativus]
          Length = 741

 Score =  437 bits (1124), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 227/573 (39%), Positives = 344/573 (60%), Gaps = 14/573 (2%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWT 77
           I  Y+K+    EAK LF  M  +NVVS+N++LSG+ +NG++    + FE M ERNVVSW 
Sbjct: 147 IAGYAKKRLFREAKKLFDEMLVKNVVSWNSILSGYTKNGKMQLGLQFFEAMGERNVVSWN 206

Query: 78  AMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVIS 137
            M+ G    G +  A   F+++P  NVVSW +M+ G    G + EAR +FN MP KN++S
Sbjct: 207 LMVDGYVGVGDLDSAWMFFKKIPTPNVVSWVTMLSGFAHYGRMTEARNLFNEMPTKNLVS 266

Query: 138 WNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNV 197
           WNAMI  YV    + +A  LF EM E++ V+WT+MI+GY R G++ +   +   MP KN+
Sbjct: 267 WNAMIGAYVRENQIDDAYKLFMEMPEKDSVSWTAMINGYVRVGKLLQAREILNLMPYKNI 326

Query: 198 VSWTAMIGGFAWNGFHKESLLLFIEMK---GICDNGNNCNVQSCNSMINGYIRFGRLEEA 254
            + TAMI G+  +G   E+  +F ++     +C           NSMI GY   GR +EA
Sbjct: 327 AAQTAMINGYLQSGRMDEANEIFSQISVRDSVC----------WNSMITGYAHCGRTDEA 376

Query: 255 QNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFV 314
             LF  +  +D +SW +MI  Y   GQ+  A  +F+ M +R+ V+W ++I+G VQN L+ 
Sbjct: 377 LRLFQEMVCKDMVSWNTMIAAYAQAGQMDKALEMFNEMQERNVVSWNSLITGYVQNGLYF 436

Query: 315 EATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLI 374
           EA   F+ M+  G  P   T      A+   A +++G Q+H + +KT   +DL ++N ++
Sbjct: 437 EALNCFILMKQQGEKPDQTTIVCCLRASANLAALNVGVQLHHLTIKTGFGNDLFVKNAIL 496

Query: 375 SMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSV 434
           +MYAK G +  A N+F+ + ++D+VSWNS++ G++ +G   E +++FE M   G  P+ V
Sbjct: 497 TMYAKSGRVPEAENVFAEIKNKDVVSWNSLIAGYALNGCGKEAVELFEVMPLRGIIPDEV 556

Query: 435 TFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLR 494
           TF G+LSAC+H G V +G  LF +M + Y I+P  EHY  +INLLGR G+++EA E V  
Sbjct: 557 TFTGLLSACNHGGFVDQGLNLFKSMTETYSIKPQSEHYACVINLLGRVGRLEEAVEIVQG 616

Query: 495 LPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVE 554
           +      +IWGALL AC     N E+A+++A+RLL L+P NA  +V+L N++A +GR   
Sbjct: 617 MKTVSSAKIWGALLWACRI-HHNLELAKYSAERLLALEPQNASNYVLLSNMHAEAGRWDM 675

Query: 555 EHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLS 587
             ++R+ M      K PGCSW+  +  +  FLS
Sbjct: 676 VERVRVLMKENKAEKQPGCSWIEIDNQLHCFLS 708



 Score =  296 bits (757), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 177/553 (32%), Positives = 297/553 (53%), Gaps = 34/553 (6%)

Query: 1   MSERNHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSE 60
           M+ERN     +V   S I+ Y+K G I  A+ LF LMPQRN+VS+N+M++G+L N  + +
Sbjct: 41  MTERN-----IVTYNSMISAYAKNGRIANARELFDLMPQRNLVSWNSMIAGYLHNELVED 95

Query: 61  ARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPER-NVVSWNSMVVGLIRNGE 119
           A RLF+ M +R++ SWT MI      G + +AR+LF  +P++ + V  N+++ G  +   
Sbjct: 96  AARLFDRMFKRDIYSWTLMITCYTRIGELEKARELFNLLPDKQDTVCRNALIAGYAKKRL 155

Query: 120 LNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRA 179
             EA+K+F+ M +KNV+SWN++++GY +   M   +  FE M ERNVV+W  M+ GY   
Sbjct: 156 FREAKKLFDEMLVKNVVSWNSILSGYTKNGKMQLGLQFFEAMGERNVVSWNLMVDGYVGV 215

Query: 180 GEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCN 239
           G+++  +  F+++P  NVVSW  M+ GFA  G   E+  LF EM          N+ S N
Sbjct: 216 GDLDSAWMFFKKIPTPNVVSWVTMLSGFAHYGRMTEARNLFNEMP-------TKNLVSWN 268

Query: 240 SMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVA 299
           +MI  Y+R  ++++A  LF  +P +D +SWT+MI+GY+ VG++  A  + + MP ++  A
Sbjct: 269 AMIGAYVRENQIDDAYKLFMEMPEKDSVSWTAMINGYVRVGKLLQAREILNLMPYKNIAA 328

Query: 300 WTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLM 359
            TAMI+G +Q+    EA  +F ++        N+  +           + L +++ C   
Sbjct: 329 QTAMINGYLQSGRMDEANEIFSQISVRDSVCWNSMITGYAHCGRTDEALRLFQEMVC--- 385

Query: 360 KTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLK 419
                 D++  N +I+ YA+ G +D A  +F+ M  R++VSWNS++ G+  +GL  E L 
Sbjct: 386 -----KDMVSWNTMIAAYAQAGQMDKALEMFNEMQERNVVSWNSLITGYVQNGLYFEALN 440

Query: 420 VFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYV--SMIN 477
            F  M + G  P+  T +  L A ++   ++ G +L +      K   G + +V  +++ 
Sbjct: 441 CFILMKQQGEKPDQTTIVCCLRASANLAALNVGVQLHHLTI---KTGFGNDLFVKNAILT 497

Query: 478 LLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNA- 536
           +  ++G++ EAE     +    D   W +L+          E  E     L E+ PL   
Sbjct: 498 MYAKSGRVPEAENVFAEIK-NKDVVSWNSLIAGYALNGCGKEAVE-----LFEVMPLRGI 551

Query: 537 -PAHVVLCNIYAA 548
            P  V    + +A
Sbjct: 552 IPDEVTFTGLLSA 564



 Score =  212 bits (540), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 117/398 (29%), Positives = 210/398 (52%), Gaps = 38/398 (9%)

Query: 7   PKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFE 66
           P   VV   + ++ ++  G + EA+ LF  MP +N+VS+NAM+  +++  ++ +A +LF 
Sbjct: 229 PTPNVVSWVTMLSGFAHYGRMTEARNLFNEMPTKNLVSWNAMIGAYVRENQIDDAYKLFM 288

Query: 67  EMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKV 126
           EMPE++ VSWTAMI G    G++ +AR++   MP +N+ +  +M+ G +++G ++EA ++
Sbjct: 289 EMPEKDSVSWTAMINGYVRVGKLLQAREILNLMPYKNIAAQTAMINGYLQSGRMDEANEI 348

Query: 127 FNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGY 186
           F+ + +++ + WN+MI GY  C    EA+ LF+EM  +++V+W +MI+ Y +AG++++  
Sbjct: 349 FSQISVRDSVCWNSMITGYAHCGRTDEALRLFQEMVCKDMVSWNTMIAAYAQAGQMDKAL 408

Query: 187 CLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSC-------- 238
            +F  M  +NVVSW ++I G+  NG + E+L  FI MK   +  +   +  C        
Sbjct: 409 EMFNEMQERNVVSWNSLITGYVQNGLYFEALNCFILMKQQGEKPDQTTIVCCLRASANLA 468

Query: 239 ------------------------NSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMID 274
                                   N+++  Y + GR+ EA+N+F  +  +D +SW S+I 
Sbjct: 469 ALNVGVQLHHLTIKTGFGNDLFVKNAILTMYAKSGRVPEAENVFAEIKNKDVVSWNSLIA 528

Query: 275 GYLSVGQVSNAYYLFHNMPDR----DAVAWTAMISGLVQNELFVEATYLFMEM-RAHGVP 329
           GY   G    A  LF  MP R    D V +T ++S         +   LF  M   + + 
Sbjct: 529 GYALNGCGKEAVELFEVMPLRGIIPDEVTFTGLLSACNHGGFVDQGLNLFKSMTETYSIK 588

Query: 330 PLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDL 367
           P +  ++ +    G    ++   +I    MKT S + +
Sbjct: 589 PQSEHYACVINLLGRVGRLEEAVEI-VQGMKTVSSAKI 625


>gi|449505835|ref|XP_004162581.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g02750-like [Cucumis sativus]
          Length = 741

 Score =  437 bits (1123), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 227/573 (39%), Positives = 343/573 (59%), Gaps = 14/573 (2%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWT 77
           I  Y+K+    EAK LF  M  +NVVS+N++LSG+ +NG++    + FE M ERNVVSW 
Sbjct: 147 IAGYAKKRLFREAKKLFDEMLVKNVVSWNSILSGYTKNGKMQLGLQFFEAMGERNVVSWN 206

Query: 78  AMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVIS 137
            M+ G    G +  A   F+++P  NVVSW +M+ G    G + EAR +FN MP KN++S
Sbjct: 207 LMVDGYVGVGDLDSAWMFFKKIPTPNVVSWVTMLSGFAHYGRMTEARNLFNEMPTKNLVS 266

Query: 138 WNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNV 197
           WNAMI  YV    + +A  LF EM E++ V+WT+MI+GY R G++ +   +   MP KN+
Sbjct: 267 WNAMIGAYVRENQIDDAYKLFMEMPEKDSVSWTAMINGYVRVGKLLQAREILNLMPYKNI 326

Query: 198 VSWTAMIGGFAWNGFHKESLLLFIEM---KGICDNGNNCNVQSCNSMINGYIRFGRLEEA 254
            + TAMI G+  +G   E+  +F ++     +C           NSMI GY   GR +EA
Sbjct: 327 AAQTAMINGYLQSGRMDEANEIFSQISVRDSVC----------WNSMITGYAHCGRTDEA 376

Query: 255 QNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFV 314
             LF  +  +D +SW +MI  Y   GQ+  A  +F+ M +R+ V+W ++I+G VQN L+ 
Sbjct: 377 LRLFQEMVCKDMVSWNTMIAAYAQAGQMDKALEMFNEMQERNVVSWNSLITGYVQNGLYF 436

Query: 315 EATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLI 374
           EA   F+ M+  G  P   T      A+   A +++G Q+H + +KT   +DL ++N ++
Sbjct: 437 EALNCFILMKQQGEKPDQTTIVCCLRASANLAALNVGVQLHHLTIKTGFGNDLFVKNAIL 496

Query: 375 SMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSV 434
           +MYAK G +  A N+F+ +  +D+VSWNS++ G++ +G   E +++FE M   G  P+ V
Sbjct: 497 TMYAKSGRVPEAENVFAEIKXKDVVSWNSLIAGYALNGCGKEAVELFEVMPLRGIIPDEV 556

Query: 435 TFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLR 494
           TF G+LSAC+H G V +G  LF +M + Y I+P  EHY  +INLLGR G+++EA E V  
Sbjct: 557 TFTGLLSACNHGGFVDQGLNLFKSMTETYSIKPQSEHYACVINLLGRVGRLEEAVEIVQG 616

Query: 495 LPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVE 554
           +      +IWGALL AC     N E+A+++A+RLL L+P NA  +V+L N++A +GR   
Sbjct: 617 MKTVSSAKIWGALLWACRI-HHNLELAKYSAERLLALEPQNASNYVLLSNMHAEAGRWDM 675

Query: 555 EHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLS 587
             ++R+ M      K PGCSW+  +  +  FLS
Sbjct: 676 VERVRVLMKENKAEKQPGCSWIEIDNQLHCFLS 708



 Score =  295 bits (756), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 177/553 (32%), Positives = 298/553 (53%), Gaps = 34/553 (6%)

Query: 1   MSERNHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSE 60
           M+ERN     +V   S I+ Y+K G I  A+ LF LMPQRN+VS+N+M++G+L N  + +
Sbjct: 41  MTERN-----IVTYNSMISAYAKNGRIANARELFDLMPQRNLVSWNSMIAGYLHNELVED 95

Query: 61  ARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPER-NVVSWNSMVVGLIRNGE 119
           A RLF+ M +R++ SWT MI      G + +AR+LF  +P++ + V  N+++ G  +   
Sbjct: 96  AARLFDRMFKRDIYSWTLMITCYTRIGELEKARELFNLLPDKQDTVCRNALIAGYAKKRL 155

Query: 120 LNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRA 179
             EA+K+F+ M +KNV+SWN++++GY +   M   +  FE M ERNVV+W  M+ GY   
Sbjct: 156 FREAKKLFDEMLVKNVVSWNSILSGYTKNGKMQLGLQFFEAMGERNVVSWNLMVDGYVGV 215

Query: 180 GEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCN 239
           G+++  +  F+++P  NVVSW  M+ GFA  G   E+  LF EM          N+ S N
Sbjct: 216 GDLDSAWMFFKKIPTPNVVSWVTMLSGFAHYGRMTEARNLFNEMP-------TKNLVSWN 268

Query: 240 SMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVA 299
           +MI  Y+R  ++++A  LF  +P +D +SWT+MI+GY+ VG++  A  + + MP ++  A
Sbjct: 269 AMIGAYVRENQIDDAYKLFMEMPEKDSVSWTAMINGYVRVGKLLQAREILNLMPYKNIAA 328

Query: 300 WTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLM 359
            TAMI+G +Q+    EA  +F ++        N+  +           + L +++ C   
Sbjct: 329 QTAMINGYLQSGRMDEANEIFSQISVRDSVCWNSMITGYAHCGRTDEALRLFQEMVC--- 385

Query: 360 KTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLK 419
                 D++  N +I+ YA+ G +D A  +F+ M  R++VSWNS++ G+  +GL  E L 
Sbjct: 386 -----KDMVSWNTMIAAYAQAGQMDKALEMFNEMQERNVVSWNSLITGYVQNGLYFEALN 440

Query: 420 VFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYV--SMIN 477
            F  M + G  P+  T +  L A ++   ++ G +L +      K   G + +V  +++ 
Sbjct: 441 CFILMKQQGEKPDQTTIVCCLRASANLAALNVGVQLHHLTI---KTGFGNDLFVKNAILT 497

Query: 478 LLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNA- 536
           +  ++G++ EAE     +  + D   W +L+          E  E     L E+ PL   
Sbjct: 498 MYAKSGRVPEAENVFAEIKXK-DVVSWNSLIAGYALNGCGKEAVE-----LFEVMPLRGI 551

Query: 537 -PAHVVLCNIYAA 548
            P  V    + +A
Sbjct: 552 IPDEVTFTGLLSA 564



 Score =  213 bits (542), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 117/398 (29%), Positives = 210/398 (52%), Gaps = 38/398 (9%)

Query: 7   PKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFE 66
           P   VV   + ++ ++  G + EA+ LF  MP +N+VS+NAM+  +++  ++ +A +LF 
Sbjct: 229 PTPNVVSWVTMLSGFAHYGRMTEARNLFNEMPTKNLVSWNAMIGAYVRENQIDDAYKLFM 288

Query: 67  EMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKV 126
           EMPE++ VSWTAMI G    G++ +AR++   MP +N+ +  +M+ G +++G ++EA ++
Sbjct: 289 EMPEKDSVSWTAMINGYVRVGKLLQAREILNLMPYKNIAAQTAMINGYLQSGRMDEANEI 348

Query: 127 FNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGY 186
           F+ + +++ + WN+MI GY  C    EA+ LF+EM  +++V+W +MI+ Y +AG++++  
Sbjct: 349 FSQISVRDSVCWNSMITGYAHCGRTDEALRLFQEMVCKDMVSWNTMIAAYAQAGQMDKAL 408

Query: 187 CLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSC-------- 238
            +F  M  +NVVSW ++I G+  NG + E+L  FI MK   +  +   +  C        
Sbjct: 409 EMFNEMQERNVVSWNSLITGYVQNGLYFEALNCFILMKQQGEKPDQTTIVCCLRASANLA 468

Query: 239 ------------------------NSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMID 274
                                   N+++  Y + GR+ EA+N+F  +  +D +SW S+I 
Sbjct: 469 ALNVGVQLHHLTIKTGFGNDLFVKNAILTMYAKSGRVPEAENVFAEIKXKDVVSWNSLIA 528

Query: 275 GYLSVGQVSNAYYLFHNMPDR----DAVAWTAMISGLVQNELFVEATYLFMEM-RAHGVP 329
           GY   G    A  LF  MP R    D V +T ++S         +   LF  M   + + 
Sbjct: 529 GYALNGCGKEAVELFEVMPLRGIIPDEVTFTGLLSACNHGGFVDQGLNLFKSMTETYSIK 588

Query: 330 PLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDL 367
           P +  ++ +    G    ++   +I    MKT S + +
Sbjct: 589 PQSEHYACVINLLGRVGRLEEAVEI-VQGMKTVSSAKI 625


>gi|224137432|ref|XP_002322556.1| predicted protein [Populus trichocarpa]
 gi|222867186|gb|EEF04317.1| predicted protein [Populus trichocarpa]
          Length = 702

 Score =  436 bits (1122), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 232/577 (40%), Positives = 342/577 (59%), Gaps = 8/577 (1%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWT 77
           I+ Y K+G ++EAK LF  MP +N++S+N+ML+G+ QN ++      F EM ER+VVSW 
Sbjct: 109 ISGYVKKGRVNEAKRLFDEMPVKNLISWNSMLAGYTQNRKMRLGLEFFNEMDERDVVSWN 168

Query: 78  AMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVIS 137
            M+ G    G +  A K F+E  + NVVSW +M+ G  RNG + E+R++F+ MP +N++S
Sbjct: 169 LMVDGFIQVGDLDSAWKFFQETQKPNVVSWVTMLSGFARNGNILESRRLFDQMPSRNIVS 228

Query: 138 WNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNV 197
           WNAMI+ YV+ C + EA  LFEEM ER+ V+WT+MI+GY R G+++E   L   MP +N+
Sbjct: 229 WNAMISAYVQRCEIDEASRLFEEMPERDSVSWTTMINGYVRIGKLDEARELLNEMPYRNI 288

Query: 198 VSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNL 257
            + TAMI G+       E+   F E+ G  D      V   N+MI GY   GR+ EA  L
Sbjct: 289 GAQTAMISGYIQCNKVDEARRFFDEI-GTWD------VVCWNAMIAGYAHHGRINEALCL 341

Query: 258 FDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEAT 317
              +  +D ++W +MI  Y  VGQ+  A  +F  M +RD V+W ++I+G + N   ++A 
Sbjct: 342 SKRMVNKDMVTWNTMISCYAQVGQMDRAVKIFEEMGERDLVSWNSLIAGFMLNGQNLDAL 401

Query: 318 YLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMY 377
             F  M   G  P   +F+    +    A + +G Q+H V++K    + L++ N LI+MY
Sbjct: 402 KSFALMGHEGKKPDQLSFACGLSSCATIAALQVGNQLHQVVVKGGYLNYLVVNNALITMY 461

Query: 378 AKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFL 437
           AKCG I  A  +F+ +   D++SWNS++ G++ +G   E LK+FE M   G  P+ VTF+
Sbjct: 462 AKCGRILEAGLVFNGICHADVISWNSLIGGYAINGYGKEALKLFEEMASEGMAPDEVTFI 521

Query: 438 GILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPF 497
           GILSAC+HAG+V  G +LF  M  VY I+P  EHY  M++LLGR G++ EA E V  +  
Sbjct: 522 GILSACNHAGMVDHGLKLFKCMSKVYAIEPLAEHYACMVDLLGRVGRLDEAFEIVRGMKV 581

Query: 498 EPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHK 557
           +    +WGALLGAC    GN E+   AA +L E +P     +V+L NI+A + R  E  +
Sbjct: 582 KATAGVWGALLGACR-AHGNLELGRLAAHKLSEFEPHKTSNYVLLSNIHAEANRWNEVQE 640

Query: 558 LRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQ 594
           +RM M      K PGCSW+     +  FLS D   ++
Sbjct: 641 VRMLMNASSTVKEPGCSWVEVRNQVHGFLSDDSTRSR 677



 Score =  320 bits (820), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 201/575 (34%), Positives = 309/575 (53%), Gaps = 47/575 (8%)

Query: 1   MSERNHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSE 60
           M+E+N      V   S I+ Y+K G I+ A+ LF  MP+RN+VS+N M+SG+L NG+  E
Sbjct: 1   MAEKN-----TVTYNSMISVYAKNGRINAARNLFDKMPRRNLVSWNTMVSGYLHNGKFDE 55

Query: 61  ARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMP---ERNVVSWNSMVVGLIRN 117
           A +LF  MP R++ SWT MI      G V +AR+LF+ +P    + V  WN+M+ G ++ 
Sbjct: 56  AYKLFVIMPRRDLFSWTLMITCYTRNGEVEKARELFDSLPCSYRKGVACWNAMISGYVKK 115

Query: 118 GELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYC 177
           G +NEA+++F+ MP+KN+ISWN+M+AGY +   M   +  F EM+ER+VV+W  M+ G+ 
Sbjct: 116 GRVNEAKRLFDEMPVKNLISWNSMLAGYTQNRKMRLGLEFFNEMDERDVVSWNLMVDGFI 175

Query: 178 RAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQS 237
           + G+++  +  F+   + NVVSW  M+ GFA NG   ES  LF +M        + N+ S
Sbjct: 176 QVGDLDSAWKFFQETQKPNVVSWVTMLSGFARNGNILESRRLFDQMP-------SRNIVS 228

Query: 238 CNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDA 297
            N+MI+ Y++   ++EA  LF+ +P RD +SWT+MI+GY+ +G++  A  L + MP R+ 
Sbjct: 229 WNAMISAYVQRCEIDEASRLFEEMPERDSVSWTTMINGYVRIGKLDEARELLNEMPYRNI 288

Query: 298 VAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCV 357
            A TAMISG +Q     EA   F E+    V   NA        AG   +  +   +   
Sbjct: 289 GAQTAMISGYIQCNKVDEARRFFDEIGTWDVVCWNAMI------AGYAHHGRINEAL--C 340

Query: 358 LMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANET 417
           L K     D++  N +IS YA+ G +D A  IF  M  RDLVSWNS++ GF  +G   + 
Sbjct: 341 LSKRMVNKDMVTWNTMISCYAQVGQMDRAVKIFEEMGERDLVSWNSLIAGFMLNGQNLDA 400

Query: 418 LKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYV---- 473
           LK F  M   G  P+ ++F   LS+C+    +  G +L   +     ++ G  +Y+    
Sbjct: 401 LKSFALMGHEGKKPDQLSFACGLSSCATIAALQVGNQLHQVV-----VKGGYLNYLVVNN 455

Query: 474 SMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGAC---GFCEGNAEIAEHAAKRLLE 530
           ++I +  + G+I EA   V       D   W +L+G     G+ +   ++ E  A   + 
Sbjct: 456 ALITMYAKCGRILEA-GLVFNGICHADVISWNSLIGGYAINGYGKEALKLFEEMASEGM- 513

Query: 531 LDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLK 565
                AP  V    I +A       H   +D GLK
Sbjct: 514 -----APDEVTFIGILSAC-----NHAGMVDHGLK 538



 Score =  214 bits (546), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 133/431 (30%), Positives = 221/431 (51%), Gaps = 23/431 (5%)

Query: 8   KSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEE 67
           K  VV   + ++ +++ G I E++ LF  MP RN+VS+NAM+S ++Q   + EA RLFEE
Sbjct: 192 KPNVVSWVTMLSGFARNGNILESRRLFDQMPSRNIVSWNAMISAYVQRCEIDEASRLFEE 251

Query: 68  MPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVF 127
           MPER+ VSWT MI G    G++ EAR+L  EMP RN+ +  +M+ G I+  +++EAR+ F
Sbjct: 252 MPERDSVSWTTMINGYVRIGKLDEARELLNEMPYRNIGAQTAMISGYIQCNKVDEARRFF 311

Query: 128 NSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYC 187
           + +   +V+ WNAMIAGY     + EA+ L + M  +++VTW +MIS Y + G+++    
Sbjct: 312 DEIGTWDVVCWNAMIAGYAHHGRINEALCLSKRMVNKDMVTWNTMISCYAQVGQMDRAVK 371

Query: 188 LFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNN----CNVQSCNSMIN 243
           +F  M  +++VSW ++I GF  NG + ++L  F  M       +     C + SC ++  
Sbjct: 372 IFEEMGERDLVSWNSLIAGFMLNGQNLDALKSFALMGHEGKKPDQLSFACGLSSCATI-- 429

Query: 244 GYIRFGRLEEAQNLFDTVPVRDEISW----TSMIDGYLSVGQVSNAYYLFHNMPDRDAVA 299
                  L+    L   V     +++     ++I  Y   G++  A  +F+ +   D ++
Sbjct: 430 -----AALQVGNQLHQVVVKGGYLNYLVVNNALITMYAKCGRILEAGLVFNGICHADVIS 484

Query: 300 WTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLM 359
           W ++I G   N    EA  LF EM + G+ P   TF  +  A      +D G ++   + 
Sbjct: 485 WNSLIGGYAINGYGKEALKLFEEMASEGMAPDEVTFIGILSACNHAGMVDHGLKLFKCMS 544

Query: 360 KTESESDLILE-NCLISMYAKCGVIDNAYNIFSNMVSRDLVS-WNSMVMGFSHHG----- 412
           K  +   L     C++ +  + G +D A+ I   M  +     W +++     HG     
Sbjct: 545 KVYAIEPLAEHYACMVDLLGRVGRLDEAFEIVRGMKVKATAGVWGALLGACRAHGNLELG 604

Query: 413 -LANETLKVFE 422
            LA   L  FE
Sbjct: 605 RLAAHKLSEFE 615


>gi|449437737|ref|XP_004136647.1| PREDICTED: pentatricopeptide repeat-containing protein At2g35030,
           mitochondrial-like [Cucumis sativus]
          Length = 649

 Score =  430 bits (1105), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 222/564 (39%), Positives = 349/564 (61%), Gaps = 12/564 (2%)

Query: 41  NVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMP 100
           NV   N +++   + G++ EAR++FEEMP+R+VVSWTA+I G    G + EA+ LF+   
Sbjct: 65  NVARSNWLITQLGKEGKIGEARQVFEEMPDRDVVSWTAVITGYIKCGMIEEAKTLFDRND 124

Query: 101 E-RNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFE 159
             +NVV+W ++V G +R   + EAR++F++MP+KNVISWN MI GY     + +A+ LFE
Sbjct: 125 AIKNVVTWTALVSGYVRWNRIEEARRLFDAMPVKNVISWNTMIEGYARKGWIDQALDLFE 184

Query: 160 EMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLL 219
           +M ERNVV+W ++I+ + +   V+E   LF RMP ++V+SWT M+ G + NG   ++ LL
Sbjct: 185 KMPERNVVSWNTVITAFMQRRRVDEAQELFNRMPERDVISWTTMVAGLSKNGRIDDARLL 244

Query: 220 FIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSV 279
           F +M          NV S N+MI GY +  RL+EA  LF+ +P R+  SW +MI G++  
Sbjct: 245 FDKMPV-------RNVVSWNTMIIGYAQNMRLDEAFKLFEQMPERELSSWNTMITGFIQN 297

Query: 280 GQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRA-HGVPPLNATFSVL 338
           G++  A   F+ M +++ V WTA+ISG VQ+    EA  +F EM+A + V P   TF  +
Sbjct: 298 GKLERAVDFFYKMSNKNVVTWTAVISGHVQDGRSEEALKIFSEMQAANNVKPNEGTFVSV 357

Query: 339 FGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSN--MVSR 396
            GA    A +  G+QIH ++ KT  +    + + LI+MY+KCG ++ A  IF +  +  R
Sbjct: 358 LGACSKLAALCEGQQIHQIISKTVYQEVADVVSALINMYSKCGELELARKIFDDGSIGHR 417

Query: 397 DLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELF 456
           D+VSWN M+  ++HHG  ++ + +F+ M   G  P++VT++ +LSACSHAGLV  G +LF
Sbjct: 418 DVVSWNGMIAAYAHHGHGHKAISLFDEMQALGFRPDNVTYIALLSACSHAGLVDEGLKLF 477

Query: 457 NAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEG 516
             +     I+   +H+  +++L GRAG+++EA +F+  L  +P   +W ALL  C    G
Sbjct: 478 ENLVRDRSIKLREDHFTCLVDLFGRAGRLQEAFDFIKGLEVKPSASVWAALLAGCN-VHG 536

Query: 517 NAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWL 576
           + ++ +  A++LLE +P NA  ++VL NIYA++G+  E   +RM M  KG++K PGCSW+
Sbjct: 537 HIDLGKLTAEKLLETEPENAGTYLVLSNIYASTGKWREAAGVRMKMKDKGLKKQPGCSWI 596

Query: 577 MRNGGIQMFLSGDKIPAQVAEILL 600
                + +F+ GD    +   I L
Sbjct: 597 EVGNTVHVFVVGDNSHREFENIYL 620



 Score =  254 bits (648), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 152/448 (33%), Positives = 245/448 (54%), Gaps = 21/448 (4%)

Query: 3   ERNHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEAR 62
           +RN     VV  T+ ++ Y +   I+EA+ LF  MP +NV+S+N M+ G+ + G + +A 
Sbjct: 121 DRNDAIKNVVTWTALVSGYVRWNRIEEARRLFDAMPVKNVISWNTMIEGYARKGWIDQAL 180

Query: 63  RLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNE 122
            LFE+MPERNVVSW  +I       RV EA++LF  MPER+V+SW +MV GL +NG +++
Sbjct: 181 DLFEKMPERNVVSWNTVITAFMQRRRVDEAQELFNRMPERDVISWTTMVAGLSKNGRIDD 240

Query: 123 ARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEV 182
           AR +F+ MP++NV+SWN MI GY +   + EA  LFE+M ER + +W +MI+G+ + G++
Sbjct: 241 ARLLFDKMPVRNVVSWNTMIIGYAQNMRLDEAFKLFEQMPERELSSWNTMITGFIQNGKL 300

Query: 183 EEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMI 242
           E     F +M  KNVV+WTA+I G   +G  +E+L +F EM+    N    N  +  S++
Sbjct: 301 ERAVDFFYKMSNKNVVTWTAVISGHVQDGRSEEALKIFSEMQAA--NNVKPNEGTFVSVL 358

Query: 243 NGYIRFGRLEEAQNLFDTVP------VRDEISWTSMIDGYLSVGQVSNAYYLFHN--MPD 294
               +   L E Q +   +       V D +S  ++I+ Y   G++  A  +F +  +  
Sbjct: 359 GACSKLAALCEGQQIHQIISKTVYQEVADVVS--ALINMYSKCGELELARKIFDDGSIGH 416

Query: 295 RDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQI 354
           RD V+W  MI+    +    +A  LF EM+A G  P N T+  L  A      +D G ++
Sbjct: 417 RDVVSWNGMIAAYAHHGHGHKAISLFDEMQALGFRPDNVTYIALLSACSHAGLVDEGLKL 476

Query: 355 HCVLMKTES---ESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVS-WNSMVMGFSH 410
              L++  S     D     CL+ ++ + G +  A++    +  +   S W +++ G + 
Sbjct: 477 FENLVRDRSIKLREDHF--TCLVDLFGRAGRLQEAFDFIKGLEVKPSASVWAALLAGCNV 534

Query: 411 HGLANETLKVFESMLESGTHP-NSVTFL 437
           HG  +      E +LE  T P N+ T+L
Sbjct: 535 HGHIDLGKLTAEKLLE--TEPENAGTYL 560



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 100/396 (25%), Positives = 174/396 (43%), Gaps = 63/396 (15%)

Query: 228 DNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYY 287
           D   N NV   N +I    + G++ EA+ +F+ +P RD +SWT++I GY+  G +  A  
Sbjct: 59  DFSANSNVARSNWLITQLGKEGKIGEARQVFEEMPDRDVVSWTAVITGYIKCGMIEEAKT 118

Query: 288 LF-HNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNA------------- 333
           LF  N   ++ V WTA++SG V+     EA  LF  M    V   N              
Sbjct: 119 LFDRNDAIKNVVTWTALVSGYVRWNRIEEARRLFDAMPVKNVISWNTMIEGYARKGWIDQ 178

Query: 334 --------------TFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAK 379
                         +++ +  A      +D  ++    L     E D+I    +++  +K
Sbjct: 179 ALDLFEKMPERNVVSWNTVITAFMQRRRVDEAQE----LFNRMPERDVISWTTMVAGLSK 234

Query: 380 CGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGI 439
            G ID+A  +F  M  R++VSWN+M++G++ +   +E  K+FE M E      +    G 
Sbjct: 235 NGRIDDARLLFDKMPVRNVVSWNTMIIGYAQNMRLDEAFKLFEQMPERELSSWNTMITGF 294

Query: 440 LSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLP--- 496
           +      G + R  + F  M +   +      + ++I+   + G+ +EA +    +    
Sbjct: 295 I----QNGKLERAVDFFYKMSNKNVVT-----WTAVISGHVQDGRSEEALKIFSEMQAAN 345

Query: 497 -FEPDHRIWGALLGAC----GFCEGNAEIAEHAAKRLLE--LDPLNAPAHVVLCNIYAAS 549
             +P+   + ++LGAC      CEG  +I +  +K + +   D ++A     L N+Y+  
Sbjct: 346 NVKPNEGTFVSVLGACSKLAALCEGQ-QIHQIISKTVYQEVADVVSA-----LINMYSKC 399

Query: 550 GRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMF 585
           G  +E  +   D G  G R V   SW   NG I  +
Sbjct: 400 G-ELELARKIFDDGSIGHRDV--VSW---NGMIAAY 429


>gi|449518887|ref|XP_004166467.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g35030, mitochondrial-like [Cucumis sativus]
          Length = 649

 Score =  429 bits (1103), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 222/564 (39%), Positives = 348/564 (61%), Gaps = 12/564 (2%)

Query: 41  NVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMP 100
           NV   N +++   + G++ EAR++FEEMP+R+VVSWTA+I G    G + EA+ LF+   
Sbjct: 65  NVARSNWLITQLGKEGKIGEARQVFEEMPDRDVVSWTAVITGYIKCGMIEEAKTLFDRND 124

Query: 101 E-RNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFE 159
             +NVV+W ++V G +R   + EAR++F++MP+KNVISWN MI GY     + +A+ LFE
Sbjct: 125 AIKNVVTWTALVSGYVRWNRIEEARRLFDAMPVKNVISWNTMIEGYARKGWIDQALDLFE 184

Query: 160 EMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLL 219
            M ERNVV+W ++I+ + +   V+E   LF RMP ++V+SWT M+ G + NG   ++ LL
Sbjct: 185 XMPERNVVSWNTVITAFMQRRRVDEAQELFNRMPERDVISWTTMVAGLSKNGRIDDARLL 244

Query: 220 FIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSV 279
           F +M          NV S N+MI GY +  RL+EA  LF+ +P R+  SW +MI G++  
Sbjct: 245 FDKMPV-------RNVVSWNTMIIGYAQNMRLDEAFKLFEQMPERELSSWNTMITGFIQN 297

Query: 280 GQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRA-HGVPPLNATFSVL 338
           G++  A   F+ M +++ V WTA+ISG VQ+    EA  +F EM+A + V P   TF  +
Sbjct: 298 GKLERAVDFFYKMSNKNVVTWTAVISGHVQDGRSEEALKIFSEMQAANNVKPNEGTFVSV 357

Query: 339 FGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSN--MVSR 396
            GA    A +  G+QIH ++ KT  +    + + LI+MY+KCG ++ A  IF +  +  R
Sbjct: 358 LGACSKLAALCEGQQIHQIISKTVYQEVADVVSALINMYSKCGELELARKIFDDGSIGHR 417

Query: 397 DLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELF 456
           D+VSWN M+  ++HHG  ++ + +F+ M   G  P++VT++ +LSACSHAGLV  G +LF
Sbjct: 418 DVVSWNGMIAAYAHHGHGHKAISLFDEMQALGFRPDNVTYIALLSACSHAGLVDEGLKLF 477

Query: 457 NAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEG 516
             +     I+   +H+  +++L GRAG+++EA +F+  L  +P   +W ALL  C    G
Sbjct: 478 ENLVRDRSIKLREDHFTCLVDLFGRAGRLQEAFDFIKGLEVKPSASVWAALLAGCN-VHG 536

Query: 517 NAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWL 576
           + ++ +  A++LLE +P NA  ++VL NIYA++G+  E   +RM M  KG++K PGCSW+
Sbjct: 537 HIDLGKLTAEKLLETEPENAGTYLVLSNIYASTGKWREAAGVRMKMKDKGLKKQPGCSWI 596

Query: 577 MRNGGIQMFLSGDKIPAQVAEILL 600
                + +F+ GD    +   I L
Sbjct: 597 EVGNTVHVFVVGDNSHREFENIYL 620



 Score =  253 bits (646), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 152/448 (33%), Positives = 244/448 (54%), Gaps = 21/448 (4%)

Query: 3   ERNHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEAR 62
           +RN     VV  T+ ++ Y +   I+EA+ LF  MP +NV+S+N M+ G+ + G + +A 
Sbjct: 121 DRNDAIKNVVTWTALVSGYVRWNRIEEARRLFDAMPVKNVISWNTMIEGYARKGWIDQAL 180

Query: 63  RLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNE 122
            LFE MPERNVVSW  +I       RV EA++LF  MPER+V+SW +MV GL +NG +++
Sbjct: 181 DLFEXMPERNVVSWNTVITAFMQRRRVDEAQELFNRMPERDVISWTTMVAGLSKNGRIDD 240

Query: 123 ARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEV 182
           AR +F+ MP++NV+SWN MI GY +   + EA  LFE+M ER + +W +MI+G+ + G++
Sbjct: 241 ARLLFDKMPVRNVVSWNTMIIGYAQNMRLDEAFKLFEQMPERELSSWNTMITGFIQNGKL 300

Query: 183 EEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMI 242
           E     F +M  KNVV+WTA+I G   +G  +E+L +F EM+    N    N  +  S++
Sbjct: 301 ERAVDFFYKMSNKNVVTWTAVISGHVQDGRSEEALKIFSEMQAA--NNVKPNEGTFVSVL 358

Query: 243 NGYIRFGRLEEAQNLFDTVP------VRDEISWTSMIDGYLSVGQVSNAYYLFHN--MPD 294
               +   L E Q +   +       V D +S  ++I+ Y   G++  A  +F +  +  
Sbjct: 359 GACSKLAALCEGQQIHQIISKTVYQEVADVVS--ALINMYSKCGELELARKIFDDGSIGH 416

Query: 295 RDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQI 354
           RD V+W  MI+    +    +A  LF EM+A G  P N T+  L  A      +D G ++
Sbjct: 417 RDVVSWNGMIAAYAHHGHGHKAISLFDEMQALGFRPDNVTYIALLSACSHAGLVDEGLKL 476

Query: 355 HCVLMKTES---ESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVS-WNSMVMGFSH 410
              L++  S     D     CL+ ++ + G +  A++    +  +   S W +++ G + 
Sbjct: 477 FENLVRDRSIKLREDHF--TCLVDLFGRAGRLQEAFDFIKGLEVKPSASVWAALLAGCNV 534

Query: 411 HGLANETLKVFESMLESGTHP-NSVTFL 437
           HG  +      E +LE  T P N+ T+L
Sbjct: 535 HGHIDLGKLTAEKLLE--TEPENAGTYL 560



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 100/396 (25%), Positives = 174/396 (43%), Gaps = 63/396 (15%)

Query: 228 DNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYY 287
           D   N NV   N +I    + G++ EA+ +F+ +P RD +SWT++I GY+  G +  A  
Sbjct: 59  DFSANSNVARSNWLITQLGKEGKIGEARQVFEEMPDRDVVSWTAVITGYIKCGMIEEAKT 118

Query: 288 LF-HNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNA------------- 333
           LF  N   ++ V WTA++SG V+     EA  LF  M    V   N              
Sbjct: 119 LFDRNDAIKNVVTWTALVSGYVRWNRIEEARRLFDAMPVKNVISWNTMIEGYARKGWIDQ 178

Query: 334 --------------TFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAK 379
                         +++ +  A      +D  ++    L     E D+I    +++  +K
Sbjct: 179 ALDLFEXMPERNVVSWNTVITAFMQRRRVDEAQE----LFNRMPERDVISWTTMVAGLSK 234

Query: 380 CGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGI 439
            G ID+A  +F  M  R++VSWN+M++G++ +   +E  K+FE M E      +    G 
Sbjct: 235 NGRIDDARLLFDKMPVRNVVSWNTMIIGYAQNMRLDEAFKLFEQMPERELSSWNTMITGF 294

Query: 440 LSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLP--- 496
           +      G + R  + F  M +   +      + ++I+   + G+ +EA +    +    
Sbjct: 295 I----QNGKLERAVDFFYKMSNKNVVT-----WTAVISGHVQDGRSEEALKIFSEMQAAN 345

Query: 497 -FEPDHRIWGALLGAC----GFCEGNAEIAEHAAKRLLE--LDPLNAPAHVVLCNIYAAS 549
             +P+   + ++LGAC      CEG  +I +  +K + +   D ++A     L N+Y+  
Sbjct: 346 NVKPNEGTFVSVLGACSKLAALCEGQ-QIHQIISKTVYQEVADVVSA-----LINMYSKC 399

Query: 550 GRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMF 585
           G  +E  +   D G  G R V   SW   NG I  +
Sbjct: 400 G-ELELARKIFDDGSIGHRDV--VSW---NGMIAAY 429


>gi|356546772|ref|XP_003541796.1| PREDICTED: pentatricopeptide repeat-containing protein At1g53600,
           mitochondrial-like [Glycine max]
          Length = 713

 Score =  426 bits (1096), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 231/620 (37%), Positives = 361/620 (58%), Gaps = 37/620 (5%)

Query: 15  TSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNG-RLSEARRLFEEMPERNV 73
           T+ +T +++ G I  A+ LF  MPQR  VS NAM+S +++NG  + +A  LF  + ERN+
Sbjct: 76  TAMLTAFAQNGQIQNARRLFDEMPQRTTVSNNAMISAYIRNGCNVGKAYELFSVLAERNL 135

Query: 74  VSWTAMICGLADAGRVCEARKLFEEMPE--RNVVSWNSMVVGLIRNGELNEARKVFNSMP 131
           VS+ AMI G   AG+   A KL+ E P   R+    N+++ G ++ GE+NEA ++F +M 
Sbjct: 136 VSYAAMIMGFVKAGKFHMAEKLYRETPYEFRDPACSNALINGYLKMGEVNEALRIFENMG 195

Query: 132 IKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRR 191
            ++V+SW+AM+ G      +  A  LF+ M +RNVV+W++MI GY   G  +EG+CLF  
Sbjct: 196 ERDVVSWSAMVDGLCRDGRVAAARDLFDRMPDRNVVSWSAMIDGYMGEGFFQEGFCLFMD 255

Query: 192 MPRK-----NVVSWTAMIG---------------------GFAWNGFHKESLLLFIEMKG 225
           M R+     N  + T M                       GF ++     S++    M G
Sbjct: 256 MKREGLVEVNSTTMTIMFKACGNCGRMSEGMQIHGLVSRLGFEFDNVLSNSVITMYSMLG 315

Query: 226 ICDNGNN--CNVQ-----SCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLS 278
             D  +   C V      + NS+I+GYI    +E A  +F  +PV+D ISWT+MI G+  
Sbjct: 316 CTDMADKVFCTVSDKDIVTWNSLISGYIHNNEVEAAYRVFGRMPVKDVISWTAMIAGFSK 375

Query: 279 VGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVL 338
            G+V NA  LF+ +P +D   WTA+ISG V N  + EA + +  M   G  P   T S +
Sbjct: 376 SGRVENAIELFNMLPAKDDFVWTAIISGFVNNNEYEEALHWYARMIWEGCKPNPLTISSV 435

Query: 339 FGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDL 398
             A+ A   ++ G QIH  ++K   E +L ++N LIS Y+K G + +AY IF +++  ++
Sbjct: 436 LAASAALVALNEGLQIHTCILKMNLEYNLSIQNSLISFYSKSGNVVDAYRIFLDVIEPNV 495

Query: 399 VSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNA 458
           +S+NS++ GF+ +G  +E L +++ M   G  PN VTFL +LSAC+HAGLV  GW +FN 
Sbjct: 496 ISYNSIISGFAQNGFGDEALGIYKKMQSEGHEPNHVTFLAVLSACTHAGLVDEGWNIFNT 555

Query: 459 MFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNA 518
           M   Y I+P  +HY  M+++LGRAG + EA + +  +PF+P   +WGA+LGA        
Sbjct: 556 MKSHYGIEPEADHYACMVDILGRAGLLDEAIDLIRSMPFKPHSGVWGAILGASK-THLRL 614

Query: 519 EIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMR 578
           ++A+ AA+R+ +L+P NA  +VVL N+Y+A+G+ ++   ++M   LKG++K PGCSW+  
Sbjct: 615 DLAKLAAQRITDLEPKNATPYVVLSNMYSAAGKKIDGDLVKMAKNLKGIKKSPGCSWITM 674

Query: 579 NGGIQMFLSGDKIPAQVAEI 598
              + +FL+GD+    + EI
Sbjct: 675 KNKVHLFLAGDQSHGSIEEI 694



 Score = 68.9 bits (167), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 52/198 (26%), Positives = 106/198 (53%), Gaps = 12/198 (6%)

Query: 7   PKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEA----R 62
           P   V+  T+ I  +SK G ++ A  LF ++P ++   + A++SGF+ N    EA     
Sbjct: 359 PVKDVISWTAMIAGFSKSGRVENAIELFNMLPAKDDFVWTAIISGFVNNNEYEEALHWYA 418

Query: 63  RLFEEMPERNVVSWTAMICGLADAGRVCEARK----LFEEMPERNVVSWNSMVVGLIRNG 118
           R+  E  + N ++ ++++   A    + E  +    + +   E N+   NS++    ++G
Sbjct: 419 RMIWEGCKPNPLTISSVLAASAALVALNEGLQIHTCILKMNLEYNLSIQNSLISFYSKSG 478

Query: 119 ELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEME----ERNVVTWTSMIS 174
            + +A ++F  +   NVIS+N++I+G+ +     EA+ ++++M+    E N VT+ +++S
Sbjct: 479 NVVDAYRIFLDVIEPNVISYNSIISGFAQNGFGDEALGIYKKMQSEGHEPNHVTFLAVLS 538

Query: 175 GYCRAGEVEEGYCLFRRM 192
               AG V+EG+ +F  M
Sbjct: 539 ACTHAGLVDEGWNIFNTM 556


>gi|119638439|gb|ABL85030.1| hypothetical protein 57h21.3 [Brachypodium sylvaticum]
          Length = 618

 Score =  426 bits (1094), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 223/575 (38%), Positives = 334/575 (58%), Gaps = 42/575 (7%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPE--RNVVS 75
           + + +  G + +A+ LF   P R+VVS+ A+++ + + G L +AR LF+  P+  RNVV+
Sbjct: 42  VAELAAAGRVSDARRLFDRTPDRDVVSWTALVAAYARQGMLHDARALFDR-PDARRNVVT 100

Query: 76  WTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNV 135
           WTA++ G A AGRV EA  LF+ MPERNVVSWN+M+      G + +A  +F+ MP+++ 
Sbjct: 101 WTALLSGYARAGRVDEAEALFQRMPERNVVSWNTMLEAYTSAGRVRDAWTLFDGMPVRDA 160

Query: 136 ISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRK 195
            SWN ++A  V    M +A  LF+ M ERNV+ WT+M++G  R+G V+E   LF  MP +
Sbjct: 161 GSWNILLAALVRSGNMDKARKLFDRMPERNVMAWTTMVAGIARSGSVDEARALFDGMPER 220

Query: 196 NVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQ 255
           NVVSW AMI G+A N    E+  LF++M          ++ S N MI G+I+   LE AQ
Sbjct: 221 NVVSWNAMISGYARNHRIDEAHDLFMKMP-------TRDIASWNIMITGFIQDRDLERAQ 273

Query: 256 NLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVE 315
           +LFD +P R+ I+WT+M++GYL   Q   A  +F+ M              LV+      
Sbjct: 274 DLFDKMPRRNVITWTTMMNGYLQSMQSETALQIFNGM--------------LVE------ 313

Query: 316 ATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLIS 375
                      G+ P   TF     A    A +  G+Q+H ++ KT  + D  +E+ L++
Sbjct: 314 -----------GIRPNQVTFLGAVDACSNLAGLSEGQQVHQMICKTSFQFDTFIESTLMN 362

Query: 376 MYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVT 435
           +YAKCG I  A  +F     +D++SWN M+  ++HHG+  E + ++E M E G  PN VT
Sbjct: 363 LYAKCGEIRLARKVFDLSKEKDVISWNGMIAAYAHHGVGVEAIHLYEKMQEKGYKPNDVT 422

Query: 436 FLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRL 495
           ++G+LSACSH+GLV  G  +F  M     I    EHY  +I+L  RAG++ +A+  +  L
Sbjct: 423 YVGLLSACSHSGLVDEGLRIFEYMVKDRSIAVRDEHYTCLIDLCSRAGRLGDAKRLIHFL 482

Query: 496 PFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEE 555
             EP   +W ALLG C    GN  I + AA+ LLE +P NA  + +LCNIYA++G+  E 
Sbjct: 483 KVEPSSTVWNALLGGCN-SHGNESIGDLAARNLLEAEPNNAGTYTLLCNIYASAGKWKEA 541

Query: 556 HKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDK 590
            K+R +M  +G++K PGCSW+     + +F+S DK
Sbjct: 542 AKIRSEMNDRGLKKQPGCSWIEVENKVHVFVSRDK 576



 Score =  242 bits (618), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 146/477 (30%), Positives = 257/477 (53%), Gaps = 19/477 (3%)

Query: 3   ERNHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEAR 62
           +R   +  VV  T+ ++ Y++ G +DEA+ALFQ MP+RNVVS+N ML  +   GR+ +A 
Sbjct: 90  DRPDARRNVVTWTALLSGYARAGRVDEAEALFQRMPERNVVSWNTMLEAYTSAGRVRDAW 149

Query: 63  RLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNE 122
            LF+ MP R+  SW  ++  L  +G + +ARKLF+ MPERNV++W +MV G+ R+G ++E
Sbjct: 150 TLFDGMPVRDAGSWNILLAALVRSGNMDKARKLFDRMPERNVMAWTTMVAGIARSGSVDE 209

Query: 123 ARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEV 182
           AR +F+ MP +NV+SWNAMI+GY     + EA  LF +M  R++ +W  MI+G+ +  ++
Sbjct: 210 ARALFDGMPERNVVSWNAMISGYARNHRIDEAHDLFMKMPTRDIASWNIMITGFIQDRDL 269

Query: 183 EEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMI 242
           E    LF +MPR+NV++WT M+ G+  +   + +L +F    G+   G   N  +    +
Sbjct: 270 ERAQDLFDKMPRRNVITWTTMMNGYLQSMQSETALQIF---NGMLVEGIRPNQVTFLGAV 326

Query: 243 NGYIRFGRLEEAQNLFDTVPVR----DEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAV 298
           +       L E Q +   +       D    +++++ Y   G++  A  +F    ++D +
Sbjct: 327 DACSNLAGLSEGQQVHQMICKTSFQFDTFIESTLMNLYAKCGEIRLARKVFDLSKEKDVI 386

Query: 299 AWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVL 358
           +W  MI+    + + VEA +L+ +M+  G  P + T+  L  A   +  +D G +I   +
Sbjct: 387 SWNGMIAAYAHHGVGVEAIHLYEKMQEKGYKPNDVTYVGLLSACSHSGLVDEGLRIFEYM 446

Query: 359 MKTESESDLILEN----CLISMYAKCGVIDNAYNIFSNM-VSRDLVSWNSMVMGFSHHGL 413
           +K  S   + + +    CLI + ++ G + +A  +   + V      WN+++ G + HG 
Sbjct: 447 VKDRS---IAVRDEHYTCLIDLCSRAGRLGDAKRLIHFLKVEPSSTVWNALLGGCNSHG- 502

Query: 414 ANETLKVFESMLESGTHPNSV-TFLGILSACSHAGLVSRGWELFNAMFDV-YKIQPG 468
            NE++    +       PN+  T+  + +  + AG      ++ + M D   K QPG
Sbjct: 503 -NESIGDLAARNLLEAEPNNAGTYTLLCNIYASAGKWKEAAKIRSEMNDRGLKKQPG 558



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 94/364 (25%), Positives = 150/364 (41%), Gaps = 90/364 (24%)

Query: 234 NVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMP 293
           +VQ  N  +      GR+ +A+ LFD  P RD +SWT+++  Y   G + +A  LF + P
Sbjct: 34  HVQDPNRRVAELAAAGRVSDARRLFDRTPDRDVVSWTALVAAYARQGMLHDARALF-DRP 92

Query: 294 D--RDAVAWTAMISGLVQNELFVEATYLFMEMRAH------------------------- 326
           D  R+ V WTA++SG  +     EA  LF  M                            
Sbjct: 93  DARRNVVTWTALLSGYARAGRVDEAEALFQRMPERNVVSWNTMLEAYTSAGRVRDAWTLF 152

Query: 327 -GVPPLNA-TFSVLFGAAGATANIDLGRQIHC---------------------------V 357
            G+P  +A ++++L  A   + N+D  R++                              
Sbjct: 153 DGMPVRDAGSWNILLAALVRSGNMDKARKLFDRMPERNVMAWTTMVAGIARSGSVDEARA 212

Query: 358 LMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSH------- 410
           L     E +++  N +IS YA+   ID A+++F  M +RD+ SWN M+ GF         
Sbjct: 213 LFDGMPERNVVSWNAMISGYARNHRIDEAHDLFMKMPTRDIASWNIMITGFIQDRDLERA 272

Query: 411 -----------------------HGLANET-LKVFESMLESGTHPNSVTFLGILSACSHA 446
                                    + +ET L++F  ML  G  PN VTFLG + ACS+ 
Sbjct: 273 QDLFDKMPRRNVITWTTMMNGYLQSMQSETALQIFNGMLVEGIRPNQVTFLGAVDACSNL 332

Query: 447 GLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGA 506
             +S G ++ + M      Q       +++NL  + G+I+ A + V  L  E D   W  
Sbjct: 333 AGLSEGQQV-HQMICKTSFQFDTFIESTLMNLYAKCGEIRLARK-VFDLSKEKDVISWNG 390

Query: 507 LLGA 510
           ++ A
Sbjct: 391 MIAA 394


>gi|297722071|ref|NP_001173399.1| Os03g0317100 [Oryza sativa Japonica Group]
 gi|255674461|dbj|BAH92127.1| Os03g0317100 [Oryza sativa Japonica Group]
          Length = 706

 Score =  425 bits (1092), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 224/576 (38%), Positives = 340/576 (59%), Gaps = 10/576 (1%)

Query: 16  SSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVS 75
           + I   ++ G I+ A+A F+ MP R   SYNA+L+G+ +N     A  LF  MP R++ S
Sbjct: 22  ARIAHLARAGNIEGARAAFEAMPLRTTASYNALLAGYFRNRLPDAALGLFRRMPSRDLAS 81

Query: 76  WTAMICGLA-DAGRVCEARKLFEEMP-ERNVVSWNSMVVGLIRNGELNEARKVFNSMPIK 133
           + A+I GL+     + +A      +P   +VVS+ S++ G +R+G L +A ++F  MP +
Sbjct: 82  YNALISGLSLRRQTLPDAAAALASIPFPPSVVSFTSLLRGYVRHGLLADAIRLFQQMPER 141

Query: 134 NVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMP 193
           N +S+  ++ G ++   + EA  LF+EM +R+VV WT+M+SGYC+AG + E   LF  MP
Sbjct: 142 NHVSYTVLLGGLLDAGRVNEARRLFDEMPDRDVVAWTAMLSGYCQAGRITEARALFDEMP 201

Query: 194 RKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEE 253
           ++NVVSWTAMI G+A NG    +  LF  M          N  S  +M+ GYI+ G +E+
Sbjct: 202 KRNVVSWTAMISGYAQNGEVNLARKLFEVMP-------ERNEVSWTAMLVGYIQAGHVED 254

Query: 254 AQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELF 313
           A  LF+ +P     +  +M+ G+   G V  A  +F  M +RD   W+AMI    QNE  
Sbjct: 255 AAELFNAMPEHPVAACNAMMVGFGQRGMVDAAKTVFEKMCERDDGTWSAMIKAYEQNEFL 314

Query: 314 VEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCL 373
           +EA   F EM   GV P   +   +     A A +D GR++H  +++   + D+   + L
Sbjct: 315 MEALSTFREMLWRGVRPNYPSVISILTVCAALAVLDYGREVHAAMLRCSFDMDVFAVSAL 374

Query: 374 ISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNS 433
           I+MY KCG +D A  +F     +D+V WNSM+ G++ HGL  + L +F  M  +G  P+ 
Sbjct: 375 ITMYIKCGNLDKAKRVFHTFEPKDIVMWNSMITGYAQHGLGEQALGIFHDMRLAGMSPDG 434

Query: 434 VTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVL 493
           +T++G L+ACS+ G V  G E+FN+M     I+PG EHY  M++LLGR+G ++EA + + 
Sbjct: 435 ITYIGALTACSYTGKVKEGREIFNSMTVNSSIRPGAEHYSCMVDLLGRSGLVEEAFDLIK 494

Query: 494 RLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHV 553
            +P EPD  IWGAL+GAC     NAEIAE AAK+LLEL+P NA  +V+L +IY + GR  
Sbjct: 495 NMPVEPDAVIWGALMGACRM-HRNAEIAEFAAKKLLELEPGNAGPYVLLSHIYTSVGRWE 553

Query: 554 EEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGD 589
           +  K+R  +  + + K PGCSW+  +  + +F SGD
Sbjct: 554 DASKMRKFISSRNLNKSPGCSWIEYDKRVHLFTSGD 589



 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 111/347 (31%), Positives = 181/347 (52%), Gaps = 56/347 (16%)

Query: 7   PKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFE 66
           P   VV  T+ ++ Y + G I EA+ALF  MP+RNVVS+ AM+SG+ QNG ++ AR+LFE
Sbjct: 170 PDRDVVAWTAMLSGYCQAGRITEARALFDEMPKRNVVSWTAMISGYAQNGEVNLARKLFE 229

Query: 67  EMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKV 126
            MPERN VSWTAM+ G   AG V +A +LF  MPE  V + N+M+VG  + G ++ A+ V
Sbjct: 230 VMPERNEVSWTAMLVGYIQAGHVEDAAELFNAMPEHPVAACNAMMVGFGQRGMVDAAKTV 289

Query: 127 FNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEER---------------------- 164
           F  M  ++  +W+AMI  Y +   + EA+  F EM  R                      
Sbjct: 290 FEKMCERDDGTWSAMIKAYEQNEFLMEALSTFREMLWRGVRPNYPSVISILTVCAALAVL 349

Query: 165 -----------------NVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGF 207
                            +V   +++I+ Y + G +++   +F     K++V W +MI G+
Sbjct: 350 DYGREVHAAMLRCSFDMDVFAVSALITMYIKCGNLDKAKRVFHTFEPKDIVMWNSMITGY 409

Query: 208 AWNGFHKESLLLFIEMK--GICDNGNNC--NVQSCNSMINGYIRFGRLEEAQNLFDTVPV 263
           A +G  +++L +F +M+  G+  +G      + +C+         G+++E + +F+++ V
Sbjct: 410 AQHGLGEQALGIFHDMRLAGMSPDGITYIGALTACSYT-------GKVKEGREIFNSMTV 462

Query: 264 RDEIS-----WTSMIDGYLSVGQVSNAYYLFHNMP-DRDAVAWTAMI 304
              I      ++ M+D     G V  A+ L  NMP + DAV W A++
Sbjct: 463 NSSIRPGAEHYSCMVDLLGRSGLVEEAFDLIKNMPVEPDAVIWGALM 509


>gi|108707831|gb|ABF95626.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
 gi|125586055|gb|EAZ26719.1| hypothetical protein OsJ_10627 [Oryza sativa Japonica Group]
          Length = 798

 Score =  424 bits (1091), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 224/576 (38%), Positives = 340/576 (59%), Gaps = 10/576 (1%)

Query: 16  SSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVS 75
           + I   ++ G I+ A+A F+ MP R   SYNA+L+G+ +N     A  LF  MP R++ S
Sbjct: 22  ARIAHLARAGNIEGARAAFEAMPLRTTASYNALLAGYFRNRLPDAALGLFRRMPSRDLAS 81

Query: 76  WTAMICGLA-DAGRVCEARKLFEEMP-ERNVVSWNSMVVGLIRNGELNEARKVFNSMPIK 133
           + A+I GL+     + +A      +P   +VVS+ S++ G +R+G L +A ++F  MP +
Sbjct: 82  YNALISGLSLRRQTLPDAAAALASIPFPPSVVSFTSLLRGYVRHGLLADAIRLFQQMPER 141

Query: 134 NVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMP 193
           N +S+  ++ G ++   + EA  LF+EM +R+VV WT+M+SGYC+AG + E   LF  MP
Sbjct: 142 NHVSYTVLLGGLLDAGRVNEARRLFDEMPDRDVVAWTAMLSGYCQAGRITEARALFDEMP 201

Query: 194 RKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEE 253
           ++NVVSWTAMI G+A NG    +  LF  M          N  S  +M+ GYI+ G +E+
Sbjct: 202 KRNVVSWTAMISGYAQNGEVNLARKLFEVMP-------ERNEVSWTAMLVGYIQAGHVED 254

Query: 254 AQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELF 313
           A  LF+ +P     +  +M+ G+   G V  A  +F  M +RD   W+AMI    QNE  
Sbjct: 255 AAELFNAMPEHPVAACNAMMVGFGQRGMVDAAKTVFEKMCERDDGTWSAMIKAYEQNEFL 314

Query: 314 VEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCL 373
           +EA   F EM   GV P   +   +     A A +D GR++H  +++   + D+   + L
Sbjct: 315 MEALSTFREMLWRGVRPNYPSVISILTVCAALAVLDYGREVHAAMLRCSFDMDVFAVSAL 374

Query: 374 ISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNS 433
           I+MY KCG +D A  +F     +D+V WNSM+ G++ HGL  + L +F  M  +G  P+ 
Sbjct: 375 ITMYIKCGNLDKAKRVFHTFEPKDIVMWNSMITGYAQHGLGEQALGIFHDMRLAGMSPDG 434

Query: 434 VTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVL 493
           +T++G L+ACS+ G V  G E+FN+M     I+PG EHY  M++LLGR+G ++EA + + 
Sbjct: 435 ITYIGALTACSYTGKVKEGREIFNSMTVNSSIRPGAEHYSCMVDLLGRSGLVEEAFDLIK 494

Query: 494 RLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHV 553
            +P EPD  IWGAL+GAC     NAEIAE AAK+LLEL+P NA  +V+L +IY + GR  
Sbjct: 495 NMPVEPDAVIWGALMGACRM-HRNAEIAEFAAKKLLELEPGNAGPYVLLSHIYTSVGRWE 553

Query: 554 EEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGD 589
           +  K+R  +  + + K PGCSW+  +  + +F SGD
Sbjct: 554 DASKMRKFISSRNLNKSPGCSWIEYDKRVHLFTSGD 589



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 111/347 (31%), Positives = 181/347 (52%), Gaps = 56/347 (16%)

Query: 7   PKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFE 66
           P   VV  T+ ++ Y + G I EA+ALF  MP+RNVVS+ AM+SG+ QNG ++ AR+LFE
Sbjct: 170 PDRDVVAWTAMLSGYCQAGRITEARALFDEMPKRNVVSWTAMISGYAQNGEVNLARKLFE 229

Query: 67  EMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKV 126
            MPERN VSWTAM+ G   AG V +A +LF  MPE  V + N+M+VG  + G ++ A+ V
Sbjct: 230 VMPERNEVSWTAMLVGYIQAGHVEDAAELFNAMPEHPVAACNAMMVGFGQRGMVDAAKTV 289

Query: 127 FNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEER---------------------- 164
           F  M  ++  +W+AMI  Y +   + EA+  F EM  R                      
Sbjct: 290 FEKMCERDDGTWSAMIKAYEQNEFLMEALSTFREMLWRGVRPNYPSVISILTVCAALAVL 349

Query: 165 -----------------NVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGF 207
                            +V   +++I+ Y + G +++   +F     K++V W +MI G+
Sbjct: 350 DYGREVHAAMLRCSFDMDVFAVSALITMYIKCGNLDKAKRVFHTFEPKDIVMWNSMITGY 409

Query: 208 AWNGFHKESLLLFIEMK--GICDNGNNC--NVQSCNSMINGYIRFGRLEEAQNLFDTVPV 263
           A +G  +++L +F +M+  G+  +G      + +C+         G+++E + +F+++ V
Sbjct: 410 AQHGLGEQALGIFHDMRLAGMSPDGITYIGALTACSYT-------GKVKEGREIFNSMTV 462

Query: 264 RDEIS-----WTSMIDGYLSVGQVSNAYYLFHNMP-DRDAVAWTAMI 304
              I      ++ M+D     G V  A+ L  NMP + DAV W A++
Sbjct: 463 NSSIRPGAEHYSCMVDLLGRSGLVEEAFDLIKNMPVEPDAVIWGALM 509


>gi|125543632|gb|EAY89771.1| hypothetical protein OsI_11313 [Oryza sativa Indica Group]
          Length = 798

 Score =  424 bits (1091), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 224/576 (38%), Positives = 340/576 (59%), Gaps = 10/576 (1%)

Query: 16  SSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVS 75
           + I   ++ G I+ A+A F+ MP R   SYNA+L+G+ +N     A  LF  MP R++ S
Sbjct: 22  ARIAHLARAGNIEGARAAFEAMPLRTTASYNALLAGYFRNRLPDAALGLFRRMPSRDLAS 81

Query: 76  WTAMICGLA-DAGRVCEARKLFEEMP-ERNVVSWNSMVVGLIRNGELNEARKVFNSMPIK 133
           + A+I GL+     + +A      +P   +VVS+ S++ G +R+G L +A ++F  MP +
Sbjct: 82  YNALISGLSLRRQTLPDAAAALASIPFPPSVVSFTSLLRGYVRHGLLADAIRLFQQMPER 141

Query: 134 NVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMP 193
           N +S+  ++ G ++   + EA  LF+EM +R+VV WT+M+SGYC+AG + E   LF  MP
Sbjct: 142 NHVSYTVLLGGLLDAGRVNEARRLFDEMPDRDVVAWTAMLSGYCQAGRITEARALFDEMP 201

Query: 194 RKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEE 253
           ++NVVSWTAMI G+A NG    +  LF  M          N  S  +M+ GYI+ G +E+
Sbjct: 202 KRNVVSWTAMISGYAQNGEVNLARKLFEVMP-------ERNEVSWTAMLVGYIQAGHVED 254

Query: 254 AQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELF 313
           A  LF+ +P     +  +M+ G+   G V  A  +F  M +RD   W+AMI    QNE  
Sbjct: 255 AAELFNAMPEHPVAACNAMMVGFGQRGMVDAAKTVFEKMRERDDGTWSAMIKAYEQNEFL 314

Query: 314 VEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCL 373
           +EA   F EM   GV P   +   +     A A +D GR++H  +++   + D+   + L
Sbjct: 315 MEALSTFREMLWRGVRPNYPSVISILTVCAALAVLDYGREVHAAMLRCSFDMDVFAVSAL 374

Query: 374 ISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNS 433
           I+MY KCG +D A  +F     +D+V WNSM+ G++ HGL  + L +F  M  +G  P+ 
Sbjct: 375 ITMYIKCGNLDKAKRVFHTFEPKDIVMWNSMITGYAQHGLGEQALGIFHDMRLAGMSPDG 434

Query: 434 VTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVL 493
           +T++G L+ACS+ G V  G E+FN+M     I+PG EHY  M++LLGR+G ++EA + + 
Sbjct: 435 ITYIGALTACSYTGKVKEGREIFNSMTVNSSIRPGAEHYSCMVDLLGRSGLVEEAFDLIK 494

Query: 494 RLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHV 553
            +P EPD  IWGAL+GAC     NAEIAE AAK+LLEL+P NA  +V+L +IY + GR  
Sbjct: 495 NMPVEPDAVIWGALMGACRM-HRNAEIAEVAAKKLLELEPGNAGPYVLLSHIYTSVGRWE 553

Query: 554 EEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGD 589
           +  K+R  +  + + K PGCSW+  +  + +F SGD
Sbjct: 554 DASKMRKFISSRNLNKSPGCSWIEYDKRVHLFTSGD 589



 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 111/347 (31%), Positives = 181/347 (52%), Gaps = 56/347 (16%)

Query: 7   PKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFE 66
           P   VV  T+ ++ Y + G I EA+ALF  MP+RNVVS+ AM+SG+ QNG ++ AR+LFE
Sbjct: 170 PDRDVVAWTAMLSGYCQAGRITEARALFDEMPKRNVVSWTAMISGYAQNGEVNLARKLFE 229

Query: 67  EMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKV 126
            MPERN VSWTAM+ G   AG V +A +LF  MPE  V + N+M+VG  + G ++ A+ V
Sbjct: 230 VMPERNEVSWTAMLVGYIQAGHVEDAAELFNAMPEHPVAACNAMMVGFGQRGMVDAAKTV 289

Query: 127 FNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEER---------------------- 164
           F  M  ++  +W+AMI  Y +   + EA+  F EM  R                      
Sbjct: 290 FEKMRERDDGTWSAMIKAYEQNEFLMEALSTFREMLWRGVRPNYPSVISILTVCAALAVL 349

Query: 165 -----------------NVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGF 207
                            +V   +++I+ Y + G +++   +F     K++V W +MI G+
Sbjct: 350 DYGREVHAAMLRCSFDMDVFAVSALITMYIKCGNLDKAKRVFHTFEPKDIVMWNSMITGY 409

Query: 208 AWNGFHKESLLLFIEMK--GICDNGNNC--NVQSCNSMINGYIRFGRLEEAQNLFDTVPV 263
           A +G  +++L +F +M+  G+  +G      + +C+         G+++E + +F+++ V
Sbjct: 410 AQHGLGEQALGIFHDMRLAGMSPDGITYIGALTACSYT-------GKVKEGREIFNSMTV 462

Query: 264 RDEIS-----WTSMIDGYLSVGQVSNAYYLFHNMP-DRDAVAWTAMI 304
              I      ++ M+D     G V  A+ L  NMP + DAV W A++
Sbjct: 463 NSSIRPGAEHYSCMVDLLGRSGLVEEAFDLIKNMPVEPDAVIWGALM 509


>gi|449433223|ref|XP_004134397.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Cucumis sativus]
 gi|449487596|ref|XP_004157705.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Cucumis sativus]
          Length = 675

 Score =  424 bits (1089), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 233/610 (38%), Positives = 343/610 (56%), Gaps = 42/610 (6%)

Query: 14  LTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNV 73
           L S I+   + G +++A+ LF  MPQRN+V++NAM+ G+  NGR S+   LF  MPER+V
Sbjct: 49  LNSEISNCMRNGLVEQAQKLFDGMPQRNIVTWNAMIRGYFLNGRCSDGISLFRRMPERDV 108

Query: 74  VSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIK 133
            S+  +I GL   G V  A+ +F+ MP R+VVSWNSM+ G IRNG L EA ++F+ MP+K
Sbjct: 109 FSYNTVIGGLMQCGDVDGAKDIFDLMPFRDVVSWNSMIAGCIRNGLLEEAIQLFDGMPLK 168

Query: 134 NVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMP 193
           NVISWN +I G V C  +  A   F +M  R++V+WT MISG CRAG ++E   LF  MP
Sbjct: 169 NVISWNLIIGGLVNCGKLDSAGEYFGKMSRRDLVSWTIMISGLCRAGRLDEARGLFNNMP 228

Query: 194 RKNVVSWTAMIGGF----------------------AWN----GFH-----KESLLLFIE 222
            K+   W AM+ G+                      +WN    GF       ++  LF+E
Sbjct: 229 TKDARVWNAMMVGYIENGKIEMAEELFGIMPERNFGSWNKLVNGFVGSQRVDDARKLFME 288

Query: 223 MKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQV 282
           M   C        ++ N+++  YIR G + +   L + +P  +  SWT++I GY  +G+V
Sbjct: 289 MPDKCQ-------KTWNNIVLAYIRNGLVLQTHALLEKIPYGNIASWTNLIVGYFGIGEV 341

Query: 283 SNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAA 342
             A  +F +M  +D   W A I GL +N+   E   LF  M   G     ATF+ +    
Sbjct: 342 GMAVEIFESMQYKDTTVWNATIFGLGENDKGEEGLKLFTRMIRLGPCLDKATFTSILTIC 401

Query: 343 GATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWN 402
                + LGRQ H +++K      + + N +I+MYA+CG +D A+  FS+M  RD++SWN
Sbjct: 402 SDLETLQLGRQTHALILKEGFNGFVAVSNAMINMYARCGNMDCAFMEFSSMSDRDVISWN 461

Query: 403 SMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDV 462
           SM+ GF+HHG   + L++FE M  +   PN +TF+G+LSACSH GL+ +G   FN M + 
Sbjct: 462 SMICGFAHHGNGEDALEMFEKMRLANIEPNHITFIGVLSACSHKGLIDKGRYYFNFMKNE 521

Query: 463 YKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLP---FEPDHRIWGALLGACGFCEGNAE 519
             ++P  EHY  +++L GR G I EA  F+  +     E    +WGALLGAC     N +
Sbjct: 522 CSLRPLIEHYTCLVDLFGRFGLIDEALSFLAEMKAEEIEVPPSVWGALLGACRI-HKNYD 580

Query: 520 IAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRN 579
           +   A +++LE +P NA  +++L  +Y  +G+     K+   M   GV+K PGCSW+  N
Sbjct: 581 VGVIAGEKVLEKEPHNAGVYLILAEMYLRNGKRENAEKIFARMKNNGVKKQPGCSWIEVN 640

Query: 580 GGIQMFLSGD 589
               +FLSGD
Sbjct: 641 NCGYVFLSGD 650



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 57/251 (22%), Positives = 102/251 (40%), Gaps = 60/251 (23%)

Query: 366 DLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESML 425
           +L L N  IS   + G+++ A  +F  M  R++V+WN+M+ G+  +G  ++ + +F  M 
Sbjct: 45  NLKLLNSEISNCMRNGLVEQAQKLFDGMPQRNIVTWNAMIRGYFLNGRCSDGISLFRRMP 104

Query: 426 ESGTHP---------------------------NSVTFLGILSACSHAGLVSRGWELFNA 458
           E                                + V++  +++ C   GL+    +LF+ 
Sbjct: 105 ERDVFSYNTVIGGLMQCGDVDGAKDIFDLMPFRDVVSWNSMIAGCIRNGLLEEAIQLFDG 164

Query: 459 M---------------FDVYKIQPGPEHY-----------VSMINLLGRAGKIKEAEEFV 492
           M                +  K+    E++             MI+ L RAG++ EA    
Sbjct: 165 MPLKNVISWNLIIGGLVNCGKLDSAGEYFGKMSRRDLVSWTIMISGLCRAGRLDEARGLF 224

Query: 493 LRLPFEPDHRIWGALLGACGFCE-GNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGR 551
             +P + D R+W A++   G+ E G  E+AE     + E    N  +   L N +  S R
Sbjct: 225 NNMPTK-DARVWNAMM--VGYIENGKIEMAEELFGIMPE---RNFGSWNKLVNGFVGSQR 278

Query: 552 HVEEHKLRMDM 562
             +  KL M+M
Sbjct: 279 VDDARKLFMEM 289


>gi|147859671|emb|CAN83112.1| hypothetical protein VITISV_026574 [Vitis vinifera]
          Length = 833

 Score =  424 bits (1089), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 234/619 (37%), Positives = 348/619 (56%), Gaps = 54/619 (8%)

Query: 14  LTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNV 73
           L S I+   + GF +EA+ LF  MPQRN V+YNAM+ G+ QNG   E   LF+EMPER++
Sbjct: 198 LNSRISDCMRNGFTEEAQMLFDEMPQRNTVTYNAMIRGYFQNGHFGEGVSLFDEMPERDI 257

Query: 74  VSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIK 133
            S+  MI GL   G +  A ++F++MP R+VVSWNSM+ G + NG + EA +VF+ M +K
Sbjct: 258 FSYNTMIAGLMKFGDINGASEIFQKMPFRDVVSWNSMISGYVSNGLIGEALRVFSGMVLK 317

Query: 134 NVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMP 193
           +V+SWN +IAG V    +  A   F+EM  R++ +WT+MISG   AG + E   LF  MP
Sbjct: 318 DVVSWNLVIAGLVGVGKVDLAEEFFKEMGTRDIASWTTMISGLASAGRIVEARGLFEDMP 377

Query: 194 RKNVVSWTAMIGGFAWNG--------FHK-----------------------ESLLLFIE 222
            ++V +W  MI G+  NG        F K                        ++ LF+E
Sbjct: 378 VRDVRAWNTMIAGYLENGCIEIGEVLFQKMPQRDFRSWNEMINGLVRNQRIQNAMRLFVE 437

Query: 223 MKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQV 282
           M   C        +S NS++ G IR G ++EA    +  P  D +SWT++I GY   G+V
Sbjct: 438 MPQKCR-------RSWNSIVFGLIRNGLIKEAHAFLEKSPFSDTVSWTNLIVGYFETGEV 490

Query: 283 SNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAA 342
             A  +F  MP RDA AW  +I GL +N+   E    F++M+  G  P  ATF+ +    
Sbjct: 491 DTAVSIFELMPARDATAWNVIIWGLGENDHGEEGLKFFVKMKEGGPFPDEATFTSVLTIC 550

Query: 343 GATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWN 402
                + LGRQIH  + KT     + + N ++++YA+CG  ++A  +FS+M S D++SWN
Sbjct: 551 SDLPTLHLGRQIHAQVTKTGFNYFVAVSNAMVTLYARCGNSNSALLLFSSMTSHDVISWN 610

Query: 403 SMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDV 462
           S++ G +H+G   E +++FE M  +   PN +TF+G+LSACSHAGLV +G   F+ M   
Sbjct: 611 SIICGLAHNGNGVEAIEMFEKMRSTDIKPNRITFVGVLSACSHAGLVDQGKYYFDFMKYK 670

Query: 463 YKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLP---FEPDHRIWGALLGACGFCEGNAE 519
             ++P  EHY  +++LLGR G I EA  F+ ++     E    +WGA+LGAC   + N +
Sbjct: 671 CCLEPTIEHYTCIVDLLGRFGLIDEAMSFLRQMEANGVEVPASVWGAVLGACRIHK-NIQ 729

Query: 520 IAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRN 579
           + E A +R+LE++P N       C      G+  +  ++ + M  KGV+K P CSW+  N
Sbjct: 730 VGEIAGERILEIEPHN------FC------GKREDAERVWVRMREKGVKKQPACSWMEVN 777

Query: 580 GGIQMFLSGDKIPAQVAEI 598
           G   +FLSGD    Q + +
Sbjct: 778 GSGHVFLSGDSSHPQFSRV 796



 Score = 99.0 bits (245), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 86/300 (28%), Positives = 133/300 (44%), Gaps = 37/300 (12%)

Query: 234 NVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMP 293
           N++  NS I+  +R G  EEAQ LFD +P R+ +++ +MI GY   G       LF  MP
Sbjct: 194 NLKPLNSRISDCMRNGFTEEAQMLFDEMPQRNTVTYNAMIRGYFQNGHFGEGVSLFDEMP 253

Query: 294 DRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLG-- 351
           +RD  ++  MI+GL++      A+ +F +M    V   N+  S      G  +N  +G  
Sbjct: 254 ERDIFSYNTMIAGLMKFGDINGASEIFQKMPFRDVVSWNSMIS------GYVSNGLIGEA 307

Query: 352 -RQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSH 410
            R    +++K     D++  N +I+     G +D A   F  M +RD+ SW +M+ G + 
Sbjct: 308 LRVFSGMVLK-----DVVSWNLVIAGLVGVGKVDLAEEFFKEMGTRDIASWTTMISGLAS 362

Query: 411 HGLANETLKVFESMLESGTHPNSVTFLGIL-SACSHAGLV---------SRGW-ELFNAM 459
            G   E   +FE M        +    G L + C   G V          R W E+ N +
Sbjct: 363 AGRIVEARGLFEDMPVRDVRAWNTMIAGYLENGCIEIGEVLFQKMPQRDFRSWNEMINGL 422

Query: 460 FDVYKIQPGPEHYV-----------SMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALL 508
               +IQ     +V           S++  L R G IKEA  F+ + PF  D   W  L+
Sbjct: 423 VRNQRIQNAMRLFVEMPQKCRRSWNSIVFGLIRNGLIKEAHAFLEKSPFS-DTVSWTNLI 481


>gi|242084152|ref|XP_002442501.1| hypothetical protein SORBIDRAFT_08g020970 [Sorghum bicolor]
 gi|241943194|gb|EES16339.1| hypothetical protein SORBIDRAFT_08g020970 [Sorghum bicolor]
          Length = 701

 Score =  422 bits (1086), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 242/653 (37%), Positives = 349/653 (53%), Gaps = 88/653 (13%)

Query: 7   PKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFE 66
           P+   V   S ++  ++ G IDEA+ALF  MP RN VS+NAM++    +GR+++AR LF+
Sbjct: 45  PRRNTVTYNSMLSALARHGRIDEARALFDGMPSRNAVSWNAMIAALSDHGRVADARGLFD 104

Query: 67  EMPERNVVSWT--------------------------------AMICGLADAGRVCEARK 94
            MP R+  SWT                                AMI G A  GR  +A K
Sbjct: 105 RMPSRDDFSWTVMVSCYARAGELELARDVLDRMPGDKCTACYNAMISGYAKNGRFDDAVK 164

Query: 95  LFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEA 154
           L  EMP  ++ SWNS + GL ++G++  A + F+ M  K+++SWN M+ G+V    +  A
Sbjct: 165 LLREMPAPDLFSWNSALAGLTQSGQMVRAVQFFDEMVEKDMVSWNLMLEGFVRAGDLDAA 224

Query: 155 IVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVV---------------- 198
              F  +E  NVV+W ++++GYCRAG + +   LF RMP +NVV                
Sbjct: 225 ASFFGRIESPNVVSWVTLLNGYCRAGRISDARDLFDRMPERNVVACNVMLDGYVRLSRLE 284

Query: 199 ---------------SWTAMIGGFAWNGFHKESLLLFIEMKGICD--------------- 228
                          SWT +I G A  G  +E+  L  +M   C                
Sbjct: 285 EACKLFDEMPGKNSISWTTIISGLARAGKLQEAKDLLDKMSFNCVAAKTALMHGYLQRNM 344

Query: 229 --------NGNNCNVQSC-NSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSV 279
                   +G   +   C N+MI+GY++ G LEEA  LF  +P +D +SW +MI GY   
Sbjct: 345 VNDARQIFDGMEVHDTVCWNTMISGYVQRGMLEEAMLLFQRMPNKDTVSWNTMIAGYAQG 404

Query: 280 GQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLF 339
           GQ+  A  +F  M  ++ V+W ++ISG VQN LFV+A + FM MR        +T++   
Sbjct: 405 GQMRKAIGIFRRMSRKNTVSWNSVISGFVQNGLFVDAFHHFMLMRRGTNRADWSTYASCL 464

Query: 340 GAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLV 399
            A    A + +GRQ+H +L+++   +DL   N LIS YAKCG +  A  IF  MV +D+V
Sbjct: 465 RACANLAALHVGRQLHSLLVRSGHINDLFARNALISTYAKCGRMLEAKQIFDEMVGKDIV 524

Query: 400 SWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAM 459
           SWN++V G++ +G   E + VF  M  +G  P+ VTF+GILSACS AGL+  G   FN+M
Sbjct: 525 SWNALVDGYASNGQGTEAISVFREMEANGVRPDEVTFVGILSACSRAGLIDEGLGFFNSM 584

Query: 460 FDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAE 519
            + Y ++P  EHY  M +LLGRAGK+ EA E V  +  +P+  +WGALLGAC   + N E
Sbjct: 585 TEEYSLKPVAEHYACMADLLGRAGKLNEAFELVQGMQIQPNAGVWGALLGACQMYK-NHE 643

Query: 520 IAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPG 572
           +A  AA++L EL+P  A  +V+L NI A +G+  E  K R  +  KG  K PG
Sbjct: 644 LARLAAEKLSELEPCRASNYVLLSNISAEAGKWDEAEKARASIKEKGANKPPG 696



 Score =  129 bits (323), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 103/393 (26%), Positives = 166/393 (42%), Gaps = 91/393 (23%)

Query: 108 NSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVV 167
           N  +  L R+G+L  AR++F+SMP                                RN V
Sbjct: 22  NQELTRLARSGQLAAARRLFDSMP-------------------------------RRNTV 50

Query: 168 TWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGIC 227
           T+ SM+S   R G ++E   LF  MP +N VSW AMI   +                   
Sbjct: 51  TYNSMLSALARHGRIDEARALFDGMPSRNAVSWNAMIAALS------------------- 91

Query: 228 DNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYY 287
                                GR+ +A+ LFD +P RD+ SWT M+  Y   G++  A  
Sbjct: 92  -------------------DHGRVADARGLFDRMPSRDDFSWTVMVSCYARAGELELARD 132

Query: 288 LFHNMP-DRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATA 346
           +   MP D+    + AMISG  +N  F +A  L  EM A   P L   FS     AG T 
Sbjct: 133 VLDRMPGDKCTACYNAMISGYAKNGRFDDAVKLLREMPA---PDL---FSWNSALAGLTQ 186

Query: 347 NIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVM 406
           +  + R +         E D++  N ++  + + G +D A + F  + S ++VSW +++ 
Sbjct: 187 SGQMVRAVQ--FFDEMVEKDMVSWNLMLEGFVRAGDLDAAASFFGRIESPNVVSWVTLLN 244

Query: 407 GFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQ 466
           G+   G  ++   +F+ M E      +V   G +        +    +LF+ M       
Sbjct: 245 GYCRAGRISDARDLFDRMPERNVVACNVMLDGYV----RLSRLEEACKLFDEM------- 293

Query: 467 PGPE--HYVSMINLLGRAGKIKEAEEFVLRLPF 497
           PG     + ++I+ L RAGK++EA++ + ++ F
Sbjct: 294 PGKNSISWTTIISGLARAGKLQEAKDLLDKMSF 326


>gi|414866530|tpg|DAA45087.1| TPA: hypothetical protein ZEAMMB73_840863 [Zea mays]
          Length = 851

 Score =  422 bits (1085), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 224/586 (38%), Positives = 346/586 (59%), Gaps = 10/586 (1%)

Query: 11  VVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPE 70
           VV   + I + ++ G ++ A+A F+ MP R   SYNA+L+G+ +N     A R+F  MP 
Sbjct: 17  VVDANARIARLARTGNMEGARATFEAMPLRTTASYNALLAGYFRNHLPDAALRVFHRMPT 76

Query: 71  RNVVSWTAMICGLA-DAGRVCEARKLFEEMP-ERNVVSWNSMVVGLIRNGELNEARKVFN 128
           R++ S+ A+I GL+     + +A      +P   +VVS+ S++ G +R+G L +A ++F 
Sbjct: 77  RDLASYNALISGLSLRRHTLPDAAAALATIPYPPSVVSFTSLLRGYVRHGLLADAIQLFR 136

Query: 129 SMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCL 188
            MP +N IS+  ++ G+++   + EA  LF+EM  ++VV WT+M+SGYC+ G V+E   L
Sbjct: 137 QMPERNHISYTVLLGGFLDAGRVDEARKLFDEMPAKDVVAWTAMLSGYCQVGRVDEARTL 196

Query: 189 FRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRF 248
           F  MP++NVVSWTAM+ G+A NG    +  LF  M          N  S  +M+ GYI+ 
Sbjct: 197 FDEMPKRNVVSWTAMVSGYAQNGQVNLARKLFEVMP-------ERNEVSWTAMLFGYIQA 249

Query: 249 GRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLV 308
           GR+E+A+ LF+ +P     +   MI G+   G V  A  +F  M +RD   W+A+I    
Sbjct: 250 GRIEDAEELFNAMPDHPLAACNGMIVGFGQQGMVDAAKSVFDRMCERDDGTWSAIIKAYE 309

Query: 309 QNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLI 368
           QNE  +EA   F EM   G+ P   +   +     A A +D GR++H  +++   + D+ 
Sbjct: 310 QNEFLMEALSTFREMLHIGIRPNYPSVISILTVCAALAVLDYGREVHGAMLRRSFDMDIY 369

Query: 369 LENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESG 428
             + LI+MY KCG +D A  +F     +D+V WNSM+ G++ HGL  E L +F+ M  +G
Sbjct: 370 AVSALITMYIKCGNLDKAKRVFHMFEPKDVVMWNSMITGYAQHGLGEEALHIFDDMRLAG 429

Query: 429 THPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEA 488
             P+ +T++G L+ACS+ G V  G ++FN+M     I+PG EHY  M++LLGRAG + EA
Sbjct: 430 MVPDGITYIGALTACSYTGKVKEGRDIFNSMRTKSGIKPGLEHYACMVDLLGRAGLVDEA 489

Query: 489 EEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAA 548
              +  +P EPD  IWGAL+GAC   + NAEIAE +AK+LLEL+P NA  +V+L +IY +
Sbjct: 490 LYLIKTMPVEPDAVIWGALMGACRMHK-NAEIAEISAKKLLELEPGNAGPYVLLSHIYTS 548

Query: 549 SGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQ 594
           SGR  +   +R  +  + + K  GCSW+  +  + +F SGD +  Q
Sbjct: 549 SGRWEDASNMRKFISSRHLNKSLGCSWIEYDKRVHLFKSGDVLAHQ 594



 Score =  205 bits (521), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 135/415 (32%), Positives = 210/415 (50%), Gaps = 53/415 (12%)

Query: 1   MSERNHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSE 60
           M ERNH     +  T  +  +   G +DEA+ LF  MP ++VV++ AMLSG+ Q GR+ E
Sbjct: 138 MPERNH-----ISYTVLLGGFLDAGRVDEARKLFDEMPAKDVVAWTAMLSGYCQVGRVDE 192

Query: 61  ARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGEL 120
           AR LF+EMP+RNVVSWTAM+ G A  G+V  ARKLFE MPERN VSW +M+ G I+ G +
Sbjct: 193 ARTLFDEMPKRNVVSWTAMVSGYAQNGQVNLARKLFEVMPERNEVSWTAMLFGYIQAGRI 252

Query: 121 NEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAG 180
            +A ++FN+MP   + + N MI G+ +  M+  A  +F+ M ER+  TW+++I  Y +  
Sbjct: 253 EDAEELFNAMPDHPLAACNGMIVGFGQQGMVDAAKSVFDRMCERDDGTWSAIIKAYEQNE 312

Query: 181 EVEEGYCLFRRM----PRKN---VVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNC 233
            + E    FR M     R N   V+S   +    A   + +E          +     + 
Sbjct: 313 FLMEALSTFREMLHIGIRPNYPSVISILTVCAALAVLDYGREV------HGAMLRRSFDM 366

Query: 234 NVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMP 293
           ++ + +++I  YI+ G L++A+ +F     +D + W SMI GY                 
Sbjct: 367 DIYAVSALITMYIKCGNLDKAKRVFHMFEPKDVVMWNSMITGY----------------- 409

Query: 294 DRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQ 353
                          Q+ L  EA ++F +MR  G+ P   T+     A   T  +  GR 
Sbjct: 410 --------------AQHGLGEEALHIFDDMRLAGMVPDGITYIGALTACSYTGKVKEGRD 455

Query: 354 IHCVLMKTESESDLILEN--CLISMYAKCGVIDNAYNIFSNM-VSRDLVSWNSMV 405
           I    M+T+S     LE+  C++ +  + G++D A  +   M V  D V W +++
Sbjct: 456 IFNS-MRTKSGIKPGLEHYACMVDLLGRAGLVDEALYLIKTMPVEPDAVIWGALM 509



 Score = 44.7 bits (104), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 46/191 (24%), Positives = 79/191 (41%), Gaps = 45/191 (23%)

Query: 358 LMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANET 417
            + + S   ++  N  I+  A+ G ++ A   F  M  R   S+N+++ G+  + L +  
Sbjct: 8   FLPSSSTPAVVDANARIARLARTGNMEGARATFEAMPLRTTASYNALLAGYFRNHLPDAA 67

Query: 418 LKVFESM----------LESGTH-------------------PNSVTFLGILSACSHAGL 448
           L+VF  M          L SG                     P+ V+F  +L      GL
Sbjct: 68  LRVFHRMPTRDLASYNALISGLSLRRHTLPDAAAALATIPYPPSVVSFTSLLRGYVRHGL 127

Query: 449 VSRGWELFNAMFDVYKIQPGPE-HYVSMINLLG---RAGKIKEAEEFVLRLPFEPDHRIW 504
           ++   +LF  M         PE +++S   LLG    AG++ EA +    +P + D   W
Sbjct: 128 LADAIQLFRQM---------PERNHISYTVLLGGFLDAGRVDEARKLFDEMPAK-DVVAW 177

Query: 505 GALLGACGFCE 515
            A+L   G+C+
Sbjct: 178 TAML--SGYCQ 186


>gi|356530245|ref|XP_003533693.1| PREDICTED: pentatricopeptide repeat-containing protein At2g35030,
           mitochondrial-like [Glycine max]
          Length = 581

 Score =  420 bits (1079), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 216/553 (39%), Positives = 334/553 (60%), Gaps = 12/553 (2%)

Query: 46  NAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEM-PERNV 104
           N  +S   + G +  AR++FEEMPER++  WT MI G    G + EARKLF+    ++NV
Sbjct: 5   NLFISRLCREGEIDYARKVFEEMPERDIGLWTTMITGYLKCGMIREARKLFDRWDAKKNV 64

Query: 105 VSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEER 164
           V+W +MV G I+  ++ EA ++F  MP++NV+SWN M+ GY    +  +A+ LF  M ER
Sbjct: 65  VTWTAMVNGYIKFNQVKEAERLFYEMPLRNVVSWNTMVDGYARNGLTQQALDLFRRMPER 124

Query: 165 NVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMK 224
           NVV+W ++I+   + G +E+   LF +M  ++VVSWT M+ G A NG  +++  LF +M 
Sbjct: 125 NVVSWNTIITALVQCGRIEDAQRLFDQMKDRDVVSWTTMVAGLAKNGRVEDARALFDQMP 184

Query: 225 GICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSN 284
                    NV S N+MI GY +  RL+EA  LF  +P RD  SW +MI G++  G+++ 
Sbjct: 185 VR-------NVVSWNAMITGYAQNRRLDEALQLFQRMPERDMPSWNTMITGFIQNGELNR 237

Query: 285 AYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRA-HGVPPLNATFSVLFGAAG 343
           A  LF  M +++ + WTAM++G VQ+ L  EA  +F++M A + + P   TF  + GA  
Sbjct: 238 AEKLFGEMQEKNVITWTAMMTGYVQHGLSEEALRVFIKMLATNELKPNTGTFVTVLGACS 297

Query: 344 ATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSN--MVSRDLVSW 401
             A +  G+QIH ++ KT  +    + + LI+MY+KCG +  A  +F +  +  RDL+SW
Sbjct: 298 DLAGLTEGQQIHQMISKTVFQDSTCVVSALINMYSKCGELHTARKMFDDGLLSQRDLISW 357

Query: 402 NSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFD 461
           N M+  ++HHG   E + +F  M E G   N VTF+G+L+ACSH GLV  G++ F+ +  
Sbjct: 358 NGMIAAYAHHGYGKEAINLFNEMQELGVCANDVTFVGLLTACSHTGLVEEGFKYFDEILK 417

Query: 462 VYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIA 521
              IQ   +HY  +++L GRAG++KEA   +  L  E    +WGALL  C    GNA+I 
Sbjct: 418 NRSIQLREDHYACLVDLCGRAGRLKEASNIIEGLGEEVPLTVWGALLAGCN-VHGNADIG 476

Query: 522 EHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGG 581
           +  A+++L+++P NA  + +L N+YA+ G+  E   +RM M   G++K PGCSW+     
Sbjct: 477 KLVAEKILKIEPQNAGTYSLLSNMYASVGKWKEAANVRMRMKDMGLKKQPGCSWIEVGNT 536

Query: 582 IQMFLSGDKIPAQ 594
           +Q+F+ GDK  +Q
Sbjct: 537 VQVFVVGDKPHSQ 549



 Score =  250 bits (639), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 151/449 (33%), Positives = 242/449 (53%), Gaps = 16/449 (3%)

Query: 3   ERNHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEAR 62
           +R   K  VV  T+ +  Y K   + EA+ LF  MP RNVVS+N M+ G+ +NG   +A 
Sbjct: 56  DRWDAKKNVVTWTAMVNGYIKFNQVKEAERLFYEMPLRNVVSWNTMVDGYARNGLTQQAL 115

Query: 63  RLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNE 122
            LF  MPERNVVSW  +I  L   GR+ +A++LF++M +R+VVSW +MV GL +NG + +
Sbjct: 116 DLFRRMPERNVVSWNTIITALVQCGRIEDAQRLFDQMKDRDVVSWTTMVAGLAKNGRVED 175

Query: 123 ARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEV 182
           AR +F+ MP++NV+SWNAMI GY +   + EA+ LF+ M ER++ +W +MI+G+ + GE+
Sbjct: 176 ARALFDQMPVRNVVSWNAMITGYAQNRRLDEALQLFQRMPERDMPSWNTMITGFIQNGEL 235

Query: 183 EEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMI 242
                LF  M  KNV++WTAM+ G+  +G  +E+L +FI+M  +  N    N  +  +++
Sbjct: 236 NRAEKLFGEMQEKNVITWTAMMTGYVQHGLSEEALRVFIKM--LATNELKPNTGTFVTVL 293

Query: 243 NGYIRFGRLEEAQNLFD----TVPVRDEISWTSMIDGYLSVGQVSNAYYLFHN--MPDRD 296
                   L E Q +      TV        +++I+ Y   G++  A  +F +  +  RD
Sbjct: 294 GACSDLAGLTEGQQIHQMISKTVFQDSTCVVSALINMYSKCGELHTARKMFDDGLLSQRD 353

Query: 297 AVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHC 356
            ++W  MI+    +    EA  LF EM+  GV   + TF  L  A   T  ++ G +   
Sbjct: 354 LISWNGMIAAYAHHGYGKEAINLFNEMQELGVCANDVTFVGLLTACSHTGLVEEGFKYFD 413

Query: 357 VLMKTESESDLILEN---CLISMYAKCGVIDNAYNIFSNMVSR-DLVSWNSMVMGFSHHG 412
            ++K  S    + E+   CL+ +  + G +  A NI   +     L  W +++ G + HG
Sbjct: 414 EILKNRSIQ--LREDHYACLVDLCGRAGRLKEASNIIEGLGEEVPLTVWGALLAGCNVHG 471

Query: 413 LANETLKVFESMLESGTHPNSVTFLGILS 441
            A+    V E +L+    P +     +LS
Sbjct: 472 NADIGKLVAEKILK--IEPQNAGTYSLLS 498



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 63/226 (27%), Positives = 107/226 (47%), Gaps = 13/226 (5%)

Query: 235 VQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNM-P 293
           ++ CN  I+   R G ++ A+ +F+ +P RD   WT+MI GYL  G +  A  LF     
Sbjct: 1   MKRCNLFISRLCREGEIDYARKVFEEMPERDIGLWTTMITGYLKCGMIREARKLFDRWDA 60

Query: 294 DRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQ 353
            ++ V WTAM++G ++     EA  LF EM    V   N               +DL R+
Sbjct: 61  KKNVVTWTAMVNGYIKFNQVKEAERLFYEMPLRNVVSWNTMVDGYARNGLTQQALDLFRR 120

Query: 354 IHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGL 413
           +         E +++  N +I+   +CG I++A  +F  M  RD+VSW +MV G + +G 
Sbjct: 121 M--------PERNVVSWNTIITALVQCGRIEDAQRLFDQMKDRDVVSWTTMVAGLAKNGR 172

Query: 414 ANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAM 459
             +   +F+ M       N V++  +++  +    +    +LF  M
Sbjct: 173 VEDARALFDQM----PVRNVVSWNAMITGYAQNRRLDEALQLFQRM 214


>gi|15217508|ref|NP_172412.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806401|sp|Q56XI1.2|PPR25_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g09410
 gi|3482916|gb|AAC33201.1| Hypothetical protein [Arabidopsis thaliana]
 gi|91805759|gb|ABE65608.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332190317|gb|AEE28438.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 705

 Score =  419 bits (1078), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 208/572 (36%), Positives = 344/572 (60%), Gaps = 9/572 (1%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWT 77
           IT  S+ G I EA+ LF     +++ S+N+M++G+  N    +AR+LF+EMP+RN++SW 
Sbjct: 24  ITHLSRIGKIHEARKLFDSCDSKSISSWNSMVAGYFANLMPRDARKLFDEMPDRNIISWN 83

Query: 78  AMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVIS 137
            ++ G    G + EARK+F+ MPERNVVSW ++V G + NG+++ A  +F  MP KN +S
Sbjct: 84  GLVSGYMKNGEIDEARKVFDLMPERNVVSWTALVKGYVHNGKVDVAESLFWKMPEKNKVS 143

Query: 138 WNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNV 197
           W  M+ G+++   + +A  L+E + +++ +  TSMI G C+ G V+E   +F  M  ++V
Sbjct: 144 WTVMLIGFLQDGRIDDACKLYEMIPDKDNIARTSMIHGLCKEGRVDEAREIFDEMSERSV 203

Query: 198 VSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNL 257
           ++WT M+ G+  N    ++  +F  M    +        S  SM+ GY++ GR+E+A+ L
Sbjct: 204 ITWTTMVTGYGQNNRVDDARKIFDVMPEKTE-------VSWTSMLMGYVQNGRIEDAEEL 256

Query: 258 FDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEAT 317
           F+ +PV+  I+  +MI G    G+++ A  +F +M +R+  +W  +I    +N   +EA 
Sbjct: 257 FEVMPVKPVIACNAMISGLGQKGEIAKARRVFDSMKERNDASWQTVIKIHERNGFELEAL 316

Query: 318 YLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMY 377
            LF+ M+  GV P   T   +     + A++  G+Q+H  L++ + + D+ + + L++MY
Sbjct: 317 DLFILMQKQGVRPTFPTLISILSVCASLASLHHGKQVHAQLVRCQFDVDVYVASVLMTMY 376

Query: 378 AKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESG-THPNSVTF 436
            KCG +  +  IF    S+D++ WNS++ G++ HGL  E LKVF  M  SG T PN VTF
Sbjct: 377 IKCGELVKSKLIFDRFPSKDIIMWNSIISGYASHGLGEEALKVFCEMPLSGSTKPNEVTF 436

Query: 437 LGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLP 496
           +  LSACS+AG+V  G +++ +M  V+ ++P   HY  M+++LGRAG+  EA E +  + 
Sbjct: 437 VATLSACSYAGMVEEGLKIYESMESVFGVKPITAHYACMVDMLGRAGRFNEAMEMIDSMT 496

Query: 497 FEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEH 556
            EPD  +WG+LLGAC       ++AE  AK+L+E++P N+  +++L N+YA+ GR  +  
Sbjct: 497 VEPDAAVWGSLLGACR-THSQLDVAEFCAKKLIEIEPENSGTYILLSNMYASQGRWADVA 555

Query: 557 KLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSG 588
           +LR  M  + VRK PGCSW      +  F  G
Sbjct: 556 ELRKLMKTRLVRKSPGCSWTEVENKVHAFTRG 587



 Score =  197 bits (501), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 123/406 (30%), Positives = 201/406 (49%), Gaps = 69/406 (16%)

Query: 7   PKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFE 66
           P   ++     ++ Y K G IDEA+ +F LMP+RNVVS+ A++ G++ NG++  A  LF 
Sbjct: 75  PDRNIISWNGLVSGYMKNGEIDEARKVFDLMPERNVVSWTALVKGYVHNGKVDVAESLFW 134

Query: 67  EMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKV 126
           +MPE+N VSWT M+ G    GR+ +A KL+E +P+++ ++  SM+ GL + G ++EAR++
Sbjct: 135 KMPEKNKVSWTVMLIGFLQDGRIDDACKLYEMIPDKDNIARTSMIHGLCKEGRVDEAREI 194

Query: 127 FNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGY 186
           F+ M  ++VI+W  M+ GY +   + +A  +F+ M E+  V+WTSM+ GY + G +E+  
Sbjct: 195 FDEMSERSVITWTTMVTGYGQNNRVDDARKIFDVMPEKTEVSWTSMLMGYVQNGRIEDAE 254

Query: 187 CLFRRMPRKNVVSWTAMIGGF----------------------AW---------NGFHKE 215
            LF  MP K V++  AMI G                       +W         NGF  E
Sbjct: 255 ELFEVMPVKPVIACNAMISGLGQKGEIAKARRVFDSMKERNDASWQTVIKIHERNGFELE 314

Query: 216 SLLLFIEMK---------------GIC------DNGNNCNVQ-----------SCNSMIN 243
           +L LFI M+                +C       +G   + Q             + ++ 
Sbjct: 315 ALDLFILMQKQGVRPTFPTLISILSVCASLASLHHGKQVHAQLVRCQFDVDVYVASVLMT 374

Query: 244 GYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMP-----DRDAV 298
            YI+ G L +++ +FD  P +D I W S+I GY S G    A  +F  MP       + V
Sbjct: 375 MYIKCGELVKSKLIFDRFPSKDIIMWNSIISGYASHGLGEEALKVFCEMPLSGSTKPNEV 434

Query: 299 AWTAMISGLVQNELFVEATYLFMEMRA-HGVPPLNATFSVLFGAAG 343
            + A +S      +  E   ++  M +  GV P+ A ++ +    G
Sbjct: 435 TFVATLSACSYAGMVEEGLKIYESMESVFGVKPITAHYACMVDMLG 480



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 69/279 (24%), Positives = 117/279 (41%), Gaps = 40/279 (14%)

Query: 237 SCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRD 296
           + N  I    R G++ EA+ LFD+   +   SW SM+ GY +     +A  LF  MPDR+
Sbjct: 19  TANVRITHLSRIGKIHEARKLFDSCDSKSISSWNSMVAGYFANLMPRDARKLFDEMPDRN 78

Query: 297 AVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIH- 355
            ++W  ++SG ++N    EA  +F  M    V     +++ L         +D+   +  
Sbjct: 79  IISWNGLVSGYMKNGEIDEARKVFDLMPERNV----VSWTALVKGYVHNGKVDVAESLFW 134

Query: 356 --------------------------CVLMKTESESDLILENCLISMYAKCGVIDNAYNI 389
                                     C L +   + D I    +I    K G +D A  I
Sbjct: 135 KMPEKNKVSWTVMLIGFLQDGRIDDACKLYEMIPDKDNIARTSMIHGLCKEGRVDEAREI 194

Query: 390 FSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLV 449
           F  M  R +++W +MV G+  +   ++  K+F+ M E       V++  +L      G +
Sbjct: 195 FDEMSERSVITWTTMVTGYGQNNRVDDARKIFDVMPEK----TEVSWTSMLMGYVQNGRI 250

Query: 450 SRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEA 488
               ELF  M     ++P      +MI+ LG+ G+I +A
Sbjct: 251 EDAEELFEVM----PVKPVIACN-AMISGLGQKGEIAKA 284


>gi|357118938|ref|XP_003561204.1| PREDICTED: pentatricopeptide repeat-containing protein At2g35030,
           mitochondrial-like [Brachypodium distachyon]
          Length = 618

 Score =  419 bits (1077), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 222/575 (38%), Positives = 334/575 (58%), Gaps = 42/575 (7%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPE--RNVVS 75
           + + +  G + +A+ LF   P R+VVS+ A+++ +   G L +AR LF+  P+  RNVV+
Sbjct: 42  VAELAAAGRVSDARRLFDRTPDRDVVSWTALVAAYACQGMLHDARALFDR-PDARRNVVT 100

Query: 76  WTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNV 135
           WTA++ G A AGRV EA  LF  MPERNVVSWN+M+     +G + +A  +FN MP+++ 
Sbjct: 101 WTALLSGYARAGRVDEAEALFGRMPERNVVSWNTMLEAYTSSGRVGDACTLFNGMPVRDA 160

Query: 136 ISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRK 195
            SWN ++A  V    + +A  LF+ M ERNV+ WT+M++G  R+G V E   LF  MP +
Sbjct: 161 GSWNILLAALVRSGNIDKARKLFDRMPERNVMAWTTMVAGIARSGSVNEARALFDGMPER 220

Query: 196 NVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQ 255
           NVVSW AMI G+A N    E+  LF++M          ++ S N MI G+I+   LE AQ
Sbjct: 221 NVVSWNAMISGYARNHMIDEAHDLFMKMP-------TRDIASWNIMITGFIQNKNLERAQ 273

Query: 256 NLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVE 315
            LFD +P R+ ++WT+M++GYL   Q   A  LF+ M          +I G+  N++   
Sbjct: 274 ELFDKMPRRNVVTWTTMMNGYLQSIQSETALQLFNGM----------LIDGIRPNQV--- 320

Query: 316 ATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLIS 375
                             TF     A    A +  G+Q+H ++ KT  + D  +E+ L++
Sbjct: 321 ------------------TFLGAVDACSNLAGLSEGQQVHQMICKTPFQFDTFIESTLMN 362

Query: 376 MYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVT 435
           +YAKCG I  A  +F+    +D++SWN M+  ++HHG+  E + ++E M E+G  PN VT
Sbjct: 363 LYAKCGEIILARKVFNLSKEKDVISWNGMIAAYAHHGVGLEAIHLYEKMQENGYKPNDVT 422

Query: 436 FLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRL 495
           ++G+LSACSH+GLV  G  +F  M     I    EHY  +I+L  RAG++ +A+  +  L
Sbjct: 423 YVGLLSACSHSGLVDEGLRIFEYMVKDRSIAVRDEHYTCLIDLCSRAGRLGDAKRLIHFL 482

Query: 496 PFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEE 555
             EP   +W ALLG C    GN  I + AA+ LLE +P NA  + +LCNIYA++G+  E 
Sbjct: 483 KVEPSSTVWNALLGGCN-SHGNESIGDLAARNLLEAEPNNAGTYTLLCNIYASAGKWKEA 541

Query: 556 HKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDK 590
            K+R +M  +G++K PGCSW+     + +F+S DK
Sbjct: 542 AKIRSEMNDRGLKKQPGCSWIEVANKVHVFVSRDK 576



 Score =  244 bits (624), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 149/477 (31%), Positives = 261/477 (54%), Gaps = 19/477 (3%)

Query: 3   ERNHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEAR 62
           +R   +  VV  T+ ++ Y++ G +DEA+ALF  MP+RNVVS+N ML  +  +GR+ +A 
Sbjct: 90  DRPDARRNVVTWTALLSGYARAGRVDEAEALFGRMPERNVVSWNTMLEAYTSSGRVGDAC 149

Query: 63  RLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNE 122
            LF  MP R+  SW  ++  L  +G + +ARKLF+ MPERNV++W +MV G+ R+G +NE
Sbjct: 150 TLFNGMPVRDAGSWNILLAALVRSGNIDKARKLFDRMPERNVMAWTTMVAGIARSGSVNE 209

Query: 123 ARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEV 182
           AR +F+ MP +NV+SWNAMI+GY    M+ EA  LF +M  R++ +W  MI+G+ +   +
Sbjct: 210 ARALFDGMPERNVVSWNAMISGYARNHMIDEAHDLFMKMPTRDIASWNIMITGFIQNKNL 269

Query: 183 EEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMI 242
           E    LF +MPR+NVV+WT M+ G+  +   + +L LF    G+  +G   N  +    +
Sbjct: 270 ERAQELFDKMPRRNVVTWTTMMNGYLQSIQSETALQLF---NGMLIDGIRPNQVTFLGAV 326

Query: 243 NGYIRFGRLEEAQNLFDTV---PVR-DEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAV 298
           +       L E Q +   +   P + D    +++++ Y   G++  A  +F+   ++D +
Sbjct: 327 DACSNLAGLSEGQQVHQMICKTPFQFDTFIESTLMNLYAKCGEIILARKVFNLSKEKDVI 386

Query: 299 AWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVL 358
           +W  MI+    + + +EA +L+ +M+ +G  P + T+  L  A   +  +D G +I   +
Sbjct: 387 SWNGMIAAYAHHGVGLEAIHLYEKMQENGYKPNDVTYVGLLSACSHSGLVDEGLRIFEYM 446

Query: 359 MKTESESDLILEN----CLISMYAKCGVIDNAYNIFSNM-VSRDLVSWNSMVMGFSHHGL 413
           +K  S   + + +    CLI + ++ G + +A  +   + V      WN+++ G + HG 
Sbjct: 447 VKDRS---IAVRDEHYTCLIDLCSRAGRLGDAKRLIHFLKVEPSSTVWNALLGGCNSHG- 502

Query: 414 ANETLKVFESMLESGTHPNSV-TFLGILSACSHAGLVSRGWELFNAMFDV-YKIQPG 468
            NE++    +       PN+  T+  + +  + AG      ++ + M D   K QPG
Sbjct: 503 -NESIGDLAARNLLEAEPNNAGTYTLLCNIYASAGKWKEAAKIRSEMNDRGLKKQPG 558



 Score =  202 bits (515), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 128/410 (31%), Positives = 207/410 (50%), Gaps = 61/410 (14%)

Query: 108 NSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEME-ERNV 166
           N  V  L   G +++AR++F+  P ++V+SW A++A Y    M+ +A  LF+  +  RNV
Sbjct: 39  NRRVAELAAAGRVSDARRLFDRTPDRDVVSWTALVAAYACQGMLHDARALFDRPDARRNV 98

Query: 167 VTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGI 226
           VTWT+++SGY RAG V+E   LF RMP +NVVSW  M+  +  +G   ++  LF  M  +
Sbjct: 99  VTWTALLSGYARAGRVDEAEALFGRMPERNVVSWNTMLEAYTSSGRVGDACTLFNGMP-V 157

Query: 227 CDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAY 286
            D G      S N ++   +R G +++A+ LFD +P R+ ++WT+M+ G    G V+ A 
Sbjct: 158 RDAG------SWNILLAALVRSGNIDKARKLFDRMPERNVMAWTTMVAGIARSGSVNEAR 211

Query: 287 YLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATA 346
            LF  MP+R+ V+W AMISG  +N +  EA  LFM+M                       
Sbjct: 212 ALFDGMPERNVVSWNAMISGYARNHMIDEAHDLFMKM----------------------- 248

Query: 347 NIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVM 406
                              D+   N +I+ + +   ++ A  +F  M  R++V+W +M+ 
Sbjct: 249 ----------------PTRDIASWNIMITGFIQNKNLERAQELFDKMPRRNVVTWTTMMN 292

Query: 407 GFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAM------F 460
           G+     +   L++F  ML  G  PN VTFLG + ACS+   +S G ++   +      F
Sbjct: 293 GYLQSIQSETALQLFNGMLIDGIRPNQVTFLGAVDACSNLAGLSEGQQVHQMICKTPFQF 352

Query: 461 DVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGA 510
           D + I+       +++NL  + G+I  A + V  L  E D   W  ++ A
Sbjct: 353 DTF-IES------TLMNLYAKCGEIILARK-VFNLSKEKDVISWNGMIAA 394


>gi|224124974|ref|XP_002319471.1| predicted protein [Populus trichocarpa]
 gi|222857847|gb|EEE95394.1| predicted protein [Populus trichocarpa]
          Length = 703

 Score =  419 bits (1077), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 217/591 (36%), Positives = 339/591 (57%), Gaps = 44/591 (7%)

Query: 34  FQLMPQRNVVSYNA-----MLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGR 88
           F+L+P R+  S +A      +S F + G++  AR +F+++  + V SW A++ G     R
Sbjct: 3   FRLIPYRSYFSSSAAITQCQISYFARLGQIDRARNIFDDLQSKTVTSWNAIVAGYFHNKR 62

Query: 89  VCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVEC 148
             EA+KLF++MPERN +SWN +V G ++NG ++EARKVF+ MP +NV+SW +M+ GYV+ 
Sbjct: 63  PAEAQKLFDKMPERNTISWNGLVSGYVKNGMISEARKVFDKMPERNVVSWTSMVRGYVQE 122

Query: 149 CMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFA 208
            ++ EA +LF  M E+NVV+WT M+ G    G V+E   LF  +P K+VV+ T MIGG  
Sbjct: 123 GLIDEAELLFWRMPEKNVVSWTVMLGGLIEDGRVDEARRLFDMIPVKDVVASTNMIGGLC 182

Query: 209 WNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEIS 268
             G   E+  +F EM          NV +  SMI+GY    +++ A+ LF+ +P ++E++
Sbjct: 183 SEGRLSEAREIFDEMP-------QRNVVAWTSMISGYAMNNKVDVARKLFEVMPDKNEVT 235

Query: 269 WTSMIDGYLSVGQVSNAYYLFHNMP-------------------------------DRDA 297
           WT+M+ GY   G+++ A  LF  MP                               ++D 
Sbjct: 236 WTAMLKGYTRSGRINEAAELFKAMPVKPVAACNGMIMGFGLNGEVGKARWVFDQMKEKDD 295

Query: 298 VAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCV 357
             W+A+I    +    +EA  LF  M+  GV P   +   +    G+ A++D GRQ+H  
Sbjct: 296 GTWSALIKIYERKGFELEALALFSLMQREGVRPNFPSIISILSVCGSLASLDHGRQVHSQ 355

Query: 358 LMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANET 417
           L+++  + D+ + + LI+MY KCG +     +F    S+D+V WNS++ G++ HG   + 
Sbjct: 356 LVRSHFDLDIYVSSVLITMYIKCGDLVTGKRVFDRFSSKDIVMWNSIIAGYAQHGFGEKA 415

Query: 418 LKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMIN 477
           L+VF  M  SG  P+ +TF+G+LSAC + G V  G E+F +M   Y++    EHY  M++
Sbjct: 416 LEVFHEMFSSGAAPDEITFIGVLSACGYTGKVKEGLEIFESMKSKYQVDQKTEHYACMVD 475

Query: 478 LLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAP 537
           LLGRAGK+ EA   +  +P E D  +WGALL AC     N ++AE AAK+LL+L+P +A 
Sbjct: 476 LLGRAGKLNEAMNLIENMPVEADAIVWGALLSACR-THKNLDLAEIAAKKLLQLEPSSAG 534

Query: 538 AHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSG 588
            +++L N+YA+  R  +  +LR  M  + V K PGCSW+  +  + MF  G
Sbjct: 535 PYILLSNLYASQSRWKDVAELRKTMRARNVSKSPGCSWIEVDNKVHMFTGG 585



 Score =  229 bits (584), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 142/419 (33%), Positives = 224/419 (53%), Gaps = 18/419 (4%)

Query: 1   MSERNHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSE 60
           M ERN     VV  TS +  Y + G IDEA+ LF  MP++NVVS+  ML G +++GR+ E
Sbjct: 104 MPERN-----VVSWTSMVRGYVQEGLIDEAELLFWRMPEKNVVSWTVMLGGLIEDGRVDE 158

Query: 61  ARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGEL 120
           ARRLF+ +P ++VV+ T MI GL   GR+ EAR++F+EMP+RNVV+W SM+ G   N ++
Sbjct: 159 ARRLFDMIPVKDVVASTNMIGGLCSEGRLSEAREIFDEMPQRNVVAWTSMISGYAMNNKV 218

Query: 121 NEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAG 180
           + ARK+F  MP KN ++W AM+ GY     + EA  LF+ M  + V     MI G+   G
Sbjct: 219 DVARKLFEVMPDKNEVTWTAMLKGYTRSGRINEAAELFKAMPVKPVAACNGMIMGFGLNG 278

Query: 181 EVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNS 240
           EV +   +F +M  K+  +W+A+I  +   GF  E+L LF  M+     G   N  S  S
Sbjct: 279 EVGKARWVFDQMKEKDDGTWSALIKIYERKGFELEALALFSLMQ---REGVRPNFPSIIS 335

Query: 241 MIN-----GYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDR 295
           +++       +  GR   +Q +     +   +S + +I  Y+  G +     +F     +
Sbjct: 336 ILSVCGSLASLDHGRQVHSQLVRSHFDLDIYVS-SVLITMYIKCGDLVTGKRVFDRFSSK 394

Query: 296 DAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIH 355
           D V W ++I+G  Q+    +A  +F EM + G  P   TF  +  A G T  +  G +I 
Sbjct: 395 DIVMWNSIIAGYAQHGFGEKALEVFHEMFSSGAAPDEITFIGVLSACGYTGKVKEGLEIF 454

Query: 356 CVLMKTESESDLILEN--CLISMYAKCGVIDNAYNIFSNM-VSRDLVSWNSMVMGFSHH 411
              MK++ + D   E+  C++ +  + G ++ A N+  NM V  D + W +++     H
Sbjct: 455 -ESMKSKYQVDQKTEHYACMVDLLGRAGKLNEAMNLIENMPVEADAIVWGALLSACRTH 512


>gi|226528958|ref|NP_001141436.1| uncharacterized protein LOC100273546 [Zea mays]
 gi|194704572|gb|ACF86370.1| unknown [Zea mays]
 gi|414877969|tpg|DAA55100.1| TPA: hypothetical protein ZEAMMB73_905907 [Zea mays]
          Length = 700

 Score =  418 bits (1074), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 244/655 (37%), Positives = 352/655 (53%), Gaps = 89/655 (13%)

Query: 7   PKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFE 66
           P    V   + ++  ++ G IDEA+ALF  MP RN VS+NAM++    +GR+++AR LF+
Sbjct: 45  PLRNTVTYNAMLSALARHGRIDEARALFDGMPGRNTVSWNAMIAALSDHGRVADARSLFD 104

Query: 67  EMPERNVVSWT--------------------------------AMICGLADAGRVCEARK 94
            MP R+  SWT                                AMI G A  GR  +A K
Sbjct: 105 RMPVRDEFSWTVMVSCYARGGDLELARDVLDRMPGDKCTACYNAMISGYAKNGRFDDAMK 164

Query: 95  LFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEA 154
           L  EMP  ++VSWNS + GL ++GE+  A + F+ M +K++ SWN M+AG+V    +  A
Sbjct: 165 LLREMPAPDLVSWNSALAGLTQSGEMVRAVQFFDEM-VKDMTSWNLMLAGFVRTGDLNAA 223

Query: 155 IVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVV---------------- 198
              F ++E  NV++W ++++GYCRAG + +   LF RMP +NVV                
Sbjct: 224 SSFFAKIESPNVISWVTLLNGYCRAGRIADARDLFDRMPERNVVAWNVMLDGYVHLSPIE 283

Query: 199 ---------------SWTAMIGGFAWNGFHKESLLLFIEMKGICD--------------- 228
                          SWT +I G A  G  +E+  L  +M   C                
Sbjct: 284 EACKLFDEMPIKNSISWTTIISGLARAGKLQEAKDLLDKMSFNCVAAKTALMHGYLQRNM 343

Query: 229 --------NGNNCNVQSC-NSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSV 279
                   +G   +   C N+MI+GY++ G LEEA  LF  +P +D +SW +MI GY   
Sbjct: 344 ADDARRIFDGMEVHDTVCWNTMISGYVQCGILEEAMLLFQRMPNKDMVSWNTMIAGYAQD 403

Query: 280 GQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLF 339
           GQ+  A  +F  M  R+ V+W ++ISG VQN+ FV+A + FM MR        +T++   
Sbjct: 404 GQMHKAIGIFRRMNRRNTVSWNSVISGFVQNDRFVDALHHFMLMRRGTNRADWSTYASCL 463

Query: 340 GAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLV 399
            A    A + +GRQ+H +L+++   +D    N LIS YAKCG I  A  IF  MV +D+V
Sbjct: 464 RACANLAVLHVGRQLHNLLVRSGHINDSFAGNALISTYAKCGRILEAKQIFDEMVYKDIV 523

Query: 400 SWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAM 459
           SWN+++ G++ +G   E + VF  M  +G  P+ VTF+GILSACSHAGL+  G   F +M
Sbjct: 524 SWNALIDGYASNGQGTEAIAVFREMEANGVRPDEVTFVGILSACSHAGLIDEGLFFFYSM 583

Query: 460 FDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAE 519
              Y ++P  EHY  M++LLGRAGK+ EA E V  +  +P+  +WGALLGAC     N E
Sbjct: 584 TKEYLLKPVAEHYACMVDLLGRAGKLNEAFELVQGMQIQPNAGVWGALLGACHM-HKNHE 642

Query: 520 IAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCS 574
           +A+ AA+RL EL+P  A  +V+L NI A +G+  E  K R  +  KGV K PG +
Sbjct: 643 LAQLAAERLSELEPRKASNYVLLSNISAEAGKWDESEKARASIKEKGVNKPPGLA 697



 Score =  128 bits (322), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 100/391 (25%), Positives = 168/391 (42%), Gaps = 88/391 (22%)

Query: 108 NSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVV 167
           N  +  L R+G+L  AR++F++MP+                               RN V
Sbjct: 22  NKELTRLARSGQLAAARRLFDAMPL-------------------------------RNTV 50

Query: 168 TWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGIC 227
           T+ +M+S   R G ++E   LF  MP +N VSW AMI   +                   
Sbjct: 51  TYNAMLSALARHGRIDEARALFDGMPGRNTVSWNAMIAALS------------------- 91

Query: 228 DNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYY 287
                                GR+ +A++LFD +PVRDE SWT M+  Y   G +  A  
Sbjct: 92  -------------------DHGRVADARSLFDRMPVRDEFSWTVMVSCYARGGDLELARD 132

Query: 288 LFHNMP-DRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATA 346
           +   MP D+    + AMISG  +N  F +A  L  EM A  +   N+        AG T 
Sbjct: 133 VLDRMPGDKCTACYNAMISGYAKNGRFDDAMKLLREMPAPDLVSWNSAL------AGLTQ 186

Query: 347 NIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVM 406
           +   G  +  V    E   D+   N +++ + + G ++ A + F+ + S +++SW +++ 
Sbjct: 187 S---GEMVRAVQFFDEMVKDMTSWNLMLAGFVRTGDLNAASSFFAKIESPNVISWVTLLN 243

Query: 407 GFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQ 466
           G+   G   +   +F+ M E     N V +  +L    H   +    +LF+ M     I 
Sbjct: 244 GYCRAGRIADARDLFDRMPER----NVVAWNVMLDGYVHLSPIEEACKLFDEMPIKNSIS 299

Query: 467 PGPEHYVSMINLLGRAGKIKEAEEFVLRLPF 497
                + ++I+ L RAGK++EA++ + ++ F
Sbjct: 300 -----WTTIISGLARAGKLQEAKDLLDKMSF 325


>gi|357156786|ref|XP_003577575.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Brachypodium distachyon]
          Length = 694

 Score =  418 bits (1074), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 215/556 (38%), Positives = 333/556 (59%), Gaps = 10/556 (1%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWT 77
           I+ Y+K G  D+A AL + MP  +++S+N++L G  +NG +  A + F+EMP R++VSW 
Sbjct: 143 ISGYAKHGRFDDAVALLREMPAPDIISWNSVLVGLTRNGEMVRAVKFFDEMPARDMVSWN 202

Query: 78  AMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVIS 137
            M+ G   AG V  A  LF  +P  NVVSW +++ G  R G + EAR++F+ +P +NV +
Sbjct: 203 LMLEGYVRAGDVDSAAGLFAGVPSPNVVSWVTLLNGYCRAGRIGEARELFDRIPDRNVAA 262

Query: 138 WNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNV 197
           WN M++GY+    M EA  LF EM ++N ++WT+MIS   R G+++E   L  +MP  + 
Sbjct: 263 WNVMLSGYLRLSHMEEAYKLFTEMPDKNSISWTTMISALVRGGKLQEAKDLLDKMPFDSF 322

Query: 198 VSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSC-NSMINGYIRFGRLEEAQN 256
            + TA++ G+  +    ++ L+F        +G       C N+MI+GY+  G L+EA  
Sbjct: 323 AAKTALMHGYLQSKMIDDARLIF--------DGLEVRDAVCWNTMISGYVHCGMLDEAMV 374

Query: 257 LFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEA 316
           LF  +P +D +SW +MI GY   GQ+  A  +F  M  R+ V+W ++ISG VQN L VEA
Sbjct: 375 LFQQMPNKDMVSWNTMIAGYAHDGQMRKAVGIFRKMNQRNTVSWNSVISGFVQNGLCVEA 434

Query: 317 TYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISM 376
              F+ MR        +T++    A    A + +GRQ H +L ++    D    N LIS 
Sbjct: 435 LQHFVLMRRDAKRADWSTYACCLSACADLAALHVGRQFHSLLARSGYIGDSFAGNALISA 494

Query: 377 YAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTF 436
           YAKCG I  A  +F  M + D+VSWN+++ G++ +G   E + VF  M ++   P+ VTF
Sbjct: 495 YAKCGRILEARQVFDEMPAPDIVSWNALIDGYASNGHGTEAISVFREMEDNDVRPDEVTF 554

Query: 437 LGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLP 496
           +G+LSACSHAGL+  G++ FN+M   Y ++P  EHY  M++LLGR+G++ EA E +  + 
Sbjct: 555 VGVLSACSHAGLIDEGFDFFNSMTKDYALRPVAEHYACMVDLLGRSGRLSEAFEIIQGMQ 614

Query: 497 FEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEH 556
            +P+  +WGA+LGAC     N E+A+ AA++L EL+P     +V+L NI A +G+  E  
Sbjct: 615 VQPNAGVWGAMLGACR-VHKNHELAQLAAEKLYELEPHKTSNYVLLSNITAEAGKWDEAQ 673

Query: 557 KLRMDMGLKGVRKVPG 572
            +R+ +  +GV K PG
Sbjct: 674 NMRVFIKERGVHKTPG 689



 Score =  284 bits (727), Expect = 9e-74,   Method: Compositional matrix adjust.
 Identities = 176/522 (33%), Positives = 262/522 (50%), Gaps = 33/522 (6%)

Query: 11  VVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPE 70
           V      +T+ ++ G +  A+ LF  MP RN VSYNAMLS   ++GR+++ARRLF+E+P 
Sbjct: 11  VYRSNQELTRLARSGQLAAARRLFDSMPSRNTVSYNAMLSALARHGRIADARRLFDEIPR 70

Query: 71  RNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSM 130
           RN VSW AMI   +D GRV +AR LF+ MP R+  SW  MV    R GEL  AR   + M
Sbjct: 71  RNTVSWNAMIAACSDHGRVADARDLFDAMPARDGFSWTLMVSCYARAGELGLARDALDRM 130

Query: 131 P-IKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLF 189
           P  K    +NAMI+GY +     +A+ L  EM   ++++W S++ G  R GE+      F
Sbjct: 131 PGDKCTACYNAMISGYAKHGRFDDAVALLREMPAPDIISWNSVLVGLTRNGEMVRAVKFF 190

Query: 190 RRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFG 249
             MP +++VSW  M+ G+   G    +  LF  +        + NV S  +++NGY R G
Sbjct: 191 DEMPARDMVSWNLMLEGYVRAGDVDSAAGLFAGVP-------SPNVVSWVTLLNGYCRAG 243

Query: 250 RLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQ 309
           R+ EA+ LFD +P R+  +W  M+ GYL +  +  AY LF  MPD+++++WT MIS LV+
Sbjct: 244 RIGEARELFDRIPDRNVAAWNVMLSGYLRLSHMEEAYKLFTEMPDKNSISWTTMISALVR 303

Query: 310 NELFVEATYLFMEMR----------AHG------VPPLNATFSVLFGAAGATANIDLGRQ 353
                EA  L  +M            HG      +      F  L        N  +   
Sbjct: 304 GGKLQEAKDLLDKMPFDSFAAKTALMHGYLQSKMIDDARLIFDGLEVRDAVCWNTMISGY 363

Query: 354 IHC-------VLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVM 406
           +HC       VL +     D++  N +I+ YA  G +  A  IF  M  R+ VSWNS++ 
Sbjct: 364 VHCGMLDEAMVLFQQMPNKDMVSWNTMIAGYAHDGQMRKAVGIFRKMNQRNTVSWNSVIS 423

Query: 407 GFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQ 466
           GF  +GL  E L+ F  M       +  T+   LSAC+    +  G + F+++       
Sbjct: 424 GFVQNGLCVEALQHFVLMRRDAKRADWSTYACCLSACADLAALHVGRQ-FHSLLARSGYI 482

Query: 467 PGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALL 508
                  ++I+   + G+I EA +    +P  PD   W AL+
Sbjct: 483 GDSFAGNALISAYAKCGRILEARQVFDEMP-APDIVSWNALI 523



 Score =  223 bits (569), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 116/379 (30%), Positives = 204/379 (53%), Gaps = 37/379 (9%)

Query: 7   PKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFE 66
           P   VV   + +  Y + G I EA+ LF  +P RNV ++N MLSG+L+   + EA +LF 
Sbjct: 225 PSPNVVSWVTLLNGYCRAGRIGEARELFDRIPDRNVAAWNVMLSGYLRLSHMEEAYKLFT 284

Query: 67  EMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKV 126
           EMP++N +SWT MI  L   G++ EA+ L ++MP  +  +  +++ G +++  +++AR +
Sbjct: 285 EMPDKNSISWTTMISALVRGGKLQEAKDLLDKMPFDSFAAKTALMHGYLQSKMIDDARLI 344

Query: 127 FNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGY 186
           F+ + +++ + WN MI+GYV C M+ EA+VLF++M  +++V+W +MI+GY   G++ +  
Sbjct: 345 FDGLEVRDAVCWNTMISGYVHCGMLDEAMVLFQQMPNKDMVSWNTMIAGYAHDGQMRKAV 404

Query: 187 CLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGN----NCNVQSC---- 238
            +FR+M ++N VSW ++I GF  NG   E+L  F+ M+      +     C + +C    
Sbjct: 405 GIFRKMNQRNTVSWNSVISGFVQNGLCVEALQHFVLMRRDAKRADWSTYACCLSACADLA 464

Query: 239 ------------------------NSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMID 274
                                   N++I+ Y + GR+ EA+ +FD +P  D +SW ++ID
Sbjct: 465 ALHVGRQFHSLLARSGYIGDSFAGNALISAYAKCGRILEARQVFDEMPAPDIVSWNALID 524

Query: 275 GYLSVGQVSNAYYLFHNMPDRDA----VAWTAMISGLVQNELFVEATYLFMEM-RAHGVP 329
           GY S G  + A  +F  M D D     V +  ++S      L  E    F  M + + + 
Sbjct: 525 GYASNGHGTEAISVFREMEDNDVRPDEVTFVGVLSACSHAGLIDEGFDFFNSMTKDYALR 584

Query: 330 PLNATFSVLFGAAGATANI 348
           P+   ++ +    G +  +
Sbjct: 585 PVAEHYACMVDLLGRSGRL 603



 Score =  210 bits (534), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 155/564 (27%), Positives = 250/564 (44%), Gaps = 128/564 (22%)

Query: 4   RNHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARR 63
           R  P   ++   S +   ++ G +  A   F  MP R++VS+N ML G+++ G +  A  
Sbjct: 160 REMPAPDIISWNSVLVGLTRNGEMVRAVKFFDEMPARDMVSWNLMLEGYVRAGDVDSAAG 219

Query: 64  LFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEA 123
           LF  +P  NVVSW  ++ G   AGR+ EAR+LF+ +P+RNV +WN M+ G +R   + EA
Sbjct: 220 LFAGVPSPNVVSWVTLLNGYCRAGRIGEARELFDRIPDRNVAAWNVMLSGYLRLSHMEEA 279

Query: 124 RKVFNSMPIKNVISWNAMIA-------------------------------GYVECCMMG 152
            K+F  MP KN ISW  MI+                               GY++  M+ 
Sbjct: 280 YKLFTEMPDKNSISWTTMISALVRGGKLQEAKDLLDKMPFDSFAAKTALMHGYLQSKMID 339

Query: 153 EAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGF 212
           +A ++F+ +E R+ V W +MISGY   G ++E   LF++MP K++VSW  MI G+A +G 
Sbjct: 340 DARLIFDGLEVRDAVCWNTMISGYVHCGMLDEAMVLFQQMPNKDMVSWNTMIAGYAHDGQ 399

Query: 213 HKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLF-------------- 258
            ++++ +F +M       N  N  S NS+I+G+++ G   EA   F              
Sbjct: 400 MRKAVGIFRKM-------NQRNTVSWNSVISGFVQNGLCVEALQHFVLMRRDAKRADWST 452

Query: 259 -------------------------DTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMP 293
                                     +  + D  +  ++I  Y   G++  A  +F  MP
Sbjct: 453 YACCLSACADLAALHVGRQFHSLLARSGYIGDSFAGNALISAYAKCGRILEARQVFDEMP 512

Query: 294 DRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQ 353
             D V+W A+I G   N    EA  +F EM  + V P   TF              +G  
Sbjct: 513 APDIVSWNALIDGYASNGHGTEAISVFREMEDNDVRPDEVTF--------------VG-- 556

Query: 354 IHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLV------SWNSMVMG 407
                         +L  C     +  G+ID  ++ F++M ++D         +  MV  
Sbjct: 557 --------------VLSAC-----SHAGLIDEGFDFFNSM-TKDYALRPVAEHYACMVDL 596

Query: 408 FSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFN-AMFDVYKIQ 466
               G  +E  ++ + M      PN+  +  +L AC     V +  EL   A   +Y+++
Sbjct: 597 LGRSGRLSEAFEIIQGM---QVQPNAGVWGAMLGACR----VHKNHELAQLAAEKLYELE 649

Query: 467 P-GPEHYVSMINLLGRAGKIKEAE 489
           P    +YV + N+   AGK  EA+
Sbjct: 650 PHKTSNYVLLSNITAEAGKWDEAQ 673


>gi|115488220|ref|NP_001066597.1| Os12g0289800 [Oryza sativa Japonica Group]
 gi|77554360|gb|ABA97156.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113649104|dbj|BAF29616.1| Os12g0289800 [Oryza sativa Japonica Group]
          Length = 756

 Score =  416 bits (1068), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 214/545 (39%), Positives = 334/545 (61%), Gaps = 8/545 (1%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWT 77
           I+ Y+K G  ++A AL Q MP  ++VS+N++L G ++N  +S + + F+EMP++++VSW 
Sbjct: 143 ISGYAKNGRFEDAIALLQEMPAPDIVSWNSVLGGLIRNEEISRSVQFFDEMPDKDLVSWN 202

Query: 78  AMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVIS 137
            M+ G   AG +  A   F  +P  NV+SW ++V G  + G + EAR++F+ MP +NV++
Sbjct: 203 LMLEGYVRAGDLDVASAFFSRIPSPNVISWVNLVNGYCQAGRMGEARELFDRMPERNVVA 262

Query: 138 WNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNV 197
           WN +++GYV+   +  A  LF EM E+N ++WT+M+SG+ R+G+++E   +  +MP  NV
Sbjct: 263 WNVLLSGYVQFSQVEAAYNLFIEMPEKNSISWTTMVSGFVRSGKLQEAKDVLSKMPSDNV 322

Query: 198 VSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNL 257
            + TA++ G+  +    ++  LF    GI      C     N+MI+GY++ G L+EA  L
Sbjct: 323 GAKTALMHGYLKSNLIDDARQLF---DGIVVRDAVC----WNTMISGYVQCGMLDEAMVL 375

Query: 258 FDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEAT 317
           F  +P +D ISW +MI G    GQ+  A  +F  M  R+ V+W ++ISG VQN LFVEA 
Sbjct: 376 FQQMPNKDMISWNTMIAGCAQGGQIRKAASIFRKMKRRNTVSWNSIISGFVQNGLFVEAL 435

Query: 318 YLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMY 377
             FM MR         T++    A+   A + +GRQ H +L++T   SD    N LIS Y
Sbjct: 436 QHFMLMRRDAKSADWCTYACCLSASANLATLQIGRQFHSLLVRTGFISDSSPGNALISAY 495

Query: 378 AKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFL 437
           AKCG +  A  +F  MV +D+VSWN+++ G++ +G  +E + VF  M  +   P+ +T +
Sbjct: 496 AKCGRMLEARQVFDEMVVQDIVSWNALIDGYASNGNGSEVIAVFREMEANSVRPDEITLV 555

Query: 438 GILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPF 497
            +LSACSHAGL+  G   FN+M  +Y ++P  EHY  M++LLGRAG+++EA E V  +  
Sbjct: 556 VVLSACSHAGLIDEGLHFFNSMIKLYSLKPVAEHYTCMVDLLGRAGRLREAFELVQGMQI 615

Query: 498 EPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHK 557
           +P+  +WGALLGAC     N EIA  AA++L EL+P  A  +V+L NI   +G+  +  K
Sbjct: 616 QPNAGVWGALLGACRV-HKNHEIAWLAAEKLFELEPCKASNYVLLSNICVEAGKWDDADK 674

Query: 558 LRMDM 562
           +R+ M
Sbjct: 675 VRVLM 679



 Score =  274 bits (701), Expect = 8e-71,   Method: Compositional matrix adjust.
 Identities = 158/452 (34%), Positives = 247/452 (54%), Gaps = 20/452 (4%)

Query: 9   SLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEM 68
           S V      +T  ++ G +  A+ LF+ MP+RNVVSYNAM+S    +GRL+EARRLF+EM
Sbjct: 9   SAVFRSNQELTSLARSGQLAAARRLFEEMPRRNVVSYNAMVSALAHHGRLAEARRLFDEM 68

Query: 69  PERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFN 128
           P RN VSW  M+   +  GRV +AR LF+ MP RN  SW  MV   +R GEL  AR++ +
Sbjct: 69  PRRNPVSWNTMMVACSQHGRVEDARGLFDAMPARNEYSWTIMVSCYVRAGELTLARELLD 128

Query: 129 SMP-IKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYC 187
            MP  K    +N MI+GY +     +AI L +EM   ++V+W S++ G  R  E+     
Sbjct: 129 RMPGEKCAACYNTMISGYAKNGRFEDAIALLQEMPAPDIVSWNSVLGGLIRNEEISRSVQ 188

Query: 188 LFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIR 247
            F  MP K++VSW  M+ G+   G    +   F  +        + NV S  +++NGY +
Sbjct: 189 FFDEMPDKDLVSWNLMLEGYVRAGDLDVASAFFSRIP-------SPNVISWVNLVNGYCQ 241

Query: 248 FGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGL 307
            GR+ EA+ LFD +P R+ ++W  ++ GY+   QV  AY LF  MP++++++WT M+SG 
Sbjct: 242 AGRMGEARELFDRMPERNVVAWNVLLSGYVQFSQVEAAYNLFIEMPEKNSISWTTMVSGF 301

Query: 308 VQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDL 367
           V++    EA  +  +M +  V    A  +++ G   +   ID  RQ+   ++      D 
Sbjct: 302 VRSGKLQEAKDVLSKMPSDNV---GAKTALMHGYLKSNL-IDDARQLFDGIVVR----DA 353

Query: 368 ILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLES 427
           +  N +IS Y +CG++D A  +F  M ++D++SWN+M+ G +  G   +   +F  M   
Sbjct: 354 VCWNTMISGYVQCGMLDEAMVLFQQMPNKDMISWNTMIAGCAQGGQIRKAASIFRKM--- 410

Query: 428 GTHPNSVTFLGILSACSHAGLVSRGWELFNAM 459
               N+V++  I+S     GL     + F  M
Sbjct: 411 -KRRNTVSWNSIISGFVQNGLFVEALQHFMLM 441



 Score =  225 bits (573), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 121/420 (28%), Positives = 214/420 (50%), Gaps = 64/420 (15%)

Query: 7   PKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFE 66
           P   V+   + +  Y + G + EA+ LF  MP+RNVV++N +LSG++Q  ++  A  LF 
Sbjct: 225 PSPNVISWVNLVNGYCQAGRMGEARELFDRMPERNVVAWNVLLSGYVQFSQVEAAYNLFI 284

Query: 67  EMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKV 126
           EMPE+N +SWT M+ G   +G++ EA+ +  +MP  NV +  +++ G +++  +++AR++
Sbjct: 285 EMPEKNSISWTTMVSGFVRSGKLQEAKDVLSKMPSDNVGAKTALMHGYLKSNLIDDARQL 344

Query: 127 FNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGY 186
           F+ + +++ + WN MI+GYV+C M+ EA+VLF++M  +++++W +MI+G  + G++ +  
Sbjct: 345 FDGIVVRDAVCWNTMISGYVQCGMLDEAMVLFQQMPNKDMISWNTMIAGCAQGGQIRKAA 404

Query: 187 CLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSC-------- 238
            +FR+M R+N VSW ++I GF  NG   E+L  F+ M+    + + C    C        
Sbjct: 405 SIFRKMKRRNTVSWNSIISGFVQNGLFVEALQHFMLMRRDAKSADWCTYACCLSASANLA 464

Query: 239 ------------------------NSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMID 274
                                   N++I+ Y + GR+ EA+ +FD + V+D +SW ++ID
Sbjct: 465 TLQIGRQFHSLLVRTGFISDSSPGNALISAYAKCGRMLEARQVFDEMVVQDIVSWNALID 524

Query: 275 GYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNAT 334
           GY S G  S                               E   +F EM A+ V P   T
Sbjct: 525 GYASNGNGS-------------------------------EVIAVFREMEANSVRPDEIT 553

Query: 335 FSVLFGAAGATANIDLGRQIHCVLMKTESESDLILE-NCLISMYAKCGVIDNAYNIFSNM 393
             V+  A      ID G      ++K  S   +     C++ +  + G +  A+ +   M
Sbjct: 554 LVVVLSACSHAGLIDEGLHFFNSMIKLYSLKPVAEHYTCMVDLLGRAGRLREAFELVQGM 613


>gi|15223594|ref|NP_176062.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75173061|sp|Q9FXB9.1|PPR84_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g56690, mitochondrial; Flags: Precursor
 gi|9954744|gb|AAG09095.1|AC009323_6 Hypothetical protein [Arabidopsis thaliana]
 gi|332195302|gb|AEE33423.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 704

 Score =  414 bits (1063), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 216/585 (36%), Positives = 335/585 (57%), Gaps = 8/585 (1%)

Query: 4   RNHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARR 63
           R +  S  V+ +  I++ S+ G I+EA+  F  +  + + S+N+++SG+  NG   EAR+
Sbjct: 10  RTYLTSTGVNCSFEISRLSRIGKINEARKFFDSLQFKAIGSWNSIVSGYFSNGLPKEARQ 69

Query: 64  LFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEA 123
           LF+EM ERNVVSW  ++ G      + EAR +FE MPERNVVSW +MV G ++ G + EA
Sbjct: 70  LFDEMSERNVVSWNGLVSGYIKNRMIVEARNVFELMPERNVVSWTAMVKGYMQEGMVGEA 129

Query: 124 RKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVE 183
             +F  MP +N +SW  M  G ++   + +A  L++ M  ++VV  T+MI G CR G V+
Sbjct: 130 ESLFWRMPERNEVSWTVMFGGLIDDGRIDKARKLYDMMPVKDVVASTNMIGGLCREGRVD 189

Query: 184 EGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMIN 243
           E   +F  M  +NVV+WT MI G+  N     +  LF  M    +        S  SM+ 
Sbjct: 190 EARLIFDEMRERNVVTWTTMITGYRQNNRVDVARKLFEVMPEKTE-------VSWTSMLL 242

Query: 244 GYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAM 303
           GY   GR+E+A+  F+ +P++  I+  +MI G+  VG++S A  +F  M DRD   W  M
Sbjct: 243 GYTLSGRIEDAEEFFEVMPMKPVIACNAMIVGFGEVGEISKARRVFDLMEDRDNATWRGM 302

Query: 304 ISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTES 363
           I    +    +EA  LF +M+  GV P   +   +       A++  GRQ+H  L++ + 
Sbjct: 303 IKAYERKGFELEALDLFAQMQKQGVRPSFPSLISILSVCATLASLQYGRQVHAHLVRCQF 362

Query: 364 ESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFES 423
           + D+ + + L++MY KCG +  A  +F    S+D++ WNS++ G++ HGL  E LK+F  
Sbjct: 363 DDDVYVASVLMTMYVKCGELVKAKLVFDRFSSKDIIMWNSIISGYASHGLGEEALKIFHE 422

Query: 424 MLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAG 483
           M  SGT PN VT + IL+ACS+AG +  G E+F +M   + + P  EHY   +++LGRAG
Sbjct: 423 MPSSGTMPNKVTLIAILTACSYAGKLEEGLEIFESMESKFCVTPTVEHYSCTVDMLGRAG 482

Query: 484 KIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLC 543
           ++ +A E +  +  +PD  +WGALLGAC       ++AE AAK+L E +P NA  +V+L 
Sbjct: 483 QVDKAMELIESMTIKPDATVWGALLGACK-THSRLDLAEVAAKKLFENEPDNAGTYVLLS 541

Query: 544 NIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSG 588
           +I A+  +  +   +R +M    V K PGCSW+     + MF  G
Sbjct: 542 SINASRSKWGDVAVVRKNMRTNNVSKFPGCSWIEVGKKVHMFTRG 586



 Score = 47.0 bits (110), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 39/163 (23%), Positives = 74/163 (45%), Gaps = 18/163 (11%)

Query: 352 RQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHH 411
           +++  +L +T   S  +  +  IS  ++ G I+ A   F ++  + + SWNS+V G+  +
Sbjct: 2   KRLKLILRRTYLTSTGVNCSFEISRLSRIGKINEARKFFDSLQFKAIGSWNSIVSGYFSN 61

Query: 412 GLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEH 471
           GL  E  ++F+ M E     N V++ G++S      ++     +F  M         PE 
Sbjct: 62  GLPKEARQLFDEMSER----NVVSWNGLVSGYIKNRMIVEARNVFELM---------PER 108

Query: 472 ----YVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGA 510
               + +M+    + G + EAE    R+P E +   W  + G 
Sbjct: 109 NVVSWTAMVKGYMQEGMVGEAESLFWRMP-ERNEVSWTVMFGG 150


>gi|242048970|ref|XP_002462229.1| hypothetical protein SORBIDRAFT_02g022150 [Sorghum bicolor]
 gi|241925606|gb|EER98750.1| hypothetical protein SORBIDRAFT_02g022150 [Sorghum bicolor]
          Length = 686

 Score =  412 bits (1060), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 222/623 (35%), Positives = 340/623 (54%), Gaps = 87/623 (13%)

Query: 7   PKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLS------- 59
           P + V+    +IT + + G + +A+ LF  M +R+  +YNAML G+  NGRL+       
Sbjct: 31  PDAEVIRRNKAITAHMRAGRVPDAERLFAAMSRRSTSTYNAMLGGYAANGRLTLALSFFR 90

Query: 60  ------------------------EARRLFEEMPERNVVSWTAMICGLADAGRVCEARKL 95
                                   +AR LF+EMP ++ VS+  MI   A+ G V  AR  
Sbjct: 91  SIPRPDSFSYNTLLHALGVSSSLADARALFDEMPVKDSVSYNVMISSHANHGLVSLARHY 150

Query: 96  FEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAI 155
           F+  PE++ VSWN M+   IRNG + EAR +F+S    + ISWNA++AGYV+C  + EA 
Sbjct: 151 FDLAPEKDAVSWNGMLAAYIRNGRIQEARDLFDSRTEWDAISWNALMAGYVQCSQIEEAQ 210

Query: 156 VLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKE 215
            +F  M +R+VV+W +M+SG+ R G++ E   LF   P ++V +WTA++     +G+ + 
Sbjct: 211 KMFNRMPQRDVVSWNTMVSGHARRGDMAEARRLFDVAPIRDVFTWTAVV-----SGYAQN 265

Query: 216 SLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDG 275
            +L   E K + D     N  S N+M+  Y++   +EEA+ LFD +P R+  SW +M+ G
Sbjct: 266 GMLE--EAKRVFDAMPEKNAVSWNAMMAAYVQRRMMEEAKELFDAMPCRNVASWNTMLTG 323

Query: 276 YLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATF 335
           Y   G +  A  +F  MP +DAV+W AM++   Q     E   LF EM            
Sbjct: 324 YAQAGMLDEARAIFDMMPQKDAVSWAAMLAAYSQGGFSEETLQLFKEM------------ 371

Query: 336 SVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVS 395
                          GR                      +MY KCG ++ A++ F  M  
Sbjct: 372 ---------------GR---------------------CAMYFKCGNMEEAHSAFEEMEE 395

Query: 396 RDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWEL 455
           RD+VSWN+M+ G++ HG   E L+VF++M ++ T P+ +T +G+L+ACSH+GLV +G   
Sbjct: 396 RDIVSWNTMIAGYARHGFGKEALEVFDTMRKTSTKPDDITLVGVLAACSHSGLVEKGISY 455

Query: 456 FNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCE 515
           F +M   + +   PEHY  MI+LLGRAG++ EA   +  +PFEPD  +WGALLGA     
Sbjct: 456 FYSMHRDFGVTAKPEHYTCMIDLLGRAGRLDEAVNLMKDMPFEPDSTMWGALLGASRIHR 515

Query: 516 GNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSW 575
            N+E+  +AA+++ EL+P NA  +V+L NIYA+SG+  +  K+R+ M  +GV+KVPG SW
Sbjct: 516 -NSELGRNAAEKIFELEPENAGMYVLLSNIYASSGKWRDVDKMRLMMHERGVKKVPGFSW 574

Query: 576 LMRNGGIQMFLSGDKIPAQVAEI 598
           +     +  F  GD +  +  +I
Sbjct: 575 IEVQNKVHTFSVGDSVHPEREDI 597


>gi|222616932|gb|EEE53064.1| hypothetical protein OsJ_35805 [Oryza sativa Japonica Group]
          Length = 841

 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 212/540 (39%), Positives = 330/540 (61%), Gaps = 8/540 (1%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWT 77
           I+ Y+K G  ++A AL Q MP  ++VS+N++L G ++N  +S + + F+EMP++++VSW 
Sbjct: 143 ISGYAKNGRFEDAIALLQEMPAPDIVSWNSVLGGLIRNEEISRSVQFFDEMPDKDLVSWN 202

Query: 78  AMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVIS 137
            M+ G   AG +  A   F  +P  NV+SW ++V G  + G + EAR++F+ MP +NV++
Sbjct: 203 LMLEGYVRAGDLDVASAFFSRIPSPNVISWVNLVNGYCQAGRMGEARELFDRMPERNVVA 262

Query: 138 WNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNV 197
           WN +++GYV+   +  A  LF EM E+N ++WT+M+SG+ R+G+++E   +  +MP  NV
Sbjct: 263 WNVLLSGYVQFSQVEAAYNLFIEMPEKNSISWTTMVSGFVRSGKLQEAKDVLSKMPSDNV 322

Query: 198 VSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNL 257
            + TA++ G+  +    ++  LF    GI      C     N+MI+GY++ G L+EA  L
Sbjct: 323 GAKTALMHGYLKSNLIDDARQLF---DGIVVRDAVC----WNTMISGYVQCGMLDEAMVL 375

Query: 258 FDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEAT 317
           F  +P +D ISW +MI G    GQ+  A  +F  M  R+ V+W ++ISG VQN LFVEA 
Sbjct: 376 FQQMPNKDMISWNTMIAGCAQGGQIRKAASIFRKMKRRNTVSWNSIISGFVQNGLFVEAL 435

Query: 318 YLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMY 377
             FM MR         T++    A+   A + +GRQ H +L++T   SD    N LIS Y
Sbjct: 436 QHFMLMRRDAKSADWCTYACCLSASANLATLQIGRQFHSLLVRTGFISDSSPGNALISAY 495

Query: 378 AKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFL 437
           AKCG +  A  +F  MV +D+VSWN+++ G++ +G  +E + VF  M  +   P+ +T +
Sbjct: 496 AKCGRMLEARQVFDEMVVQDIVSWNALIDGYASNGNGSEVIAVFREMEANSVRPDEITLV 555

Query: 438 GILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPF 497
            +LSACSHAGL+  G   FN+M  +Y ++P  EHY  M++LLGRAG+++EA E V  +  
Sbjct: 556 VVLSACSHAGLIDEGLHFFNSMIKLYSLKPVAEHYTCMVDLLGRAGRLREAFELVQGMQI 615

Query: 498 EPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHK 557
           +P+  +WGALLGAC     N EIA  AA++L EL+P  A  +V+L NI   +G+  +  K
Sbjct: 616 QPNAGVWGALLGACRV-HKNHEIAWLAAEKLFELEPCKASNYVLLSNICVEAGKWDDADK 674



 Score =  275 bits (703), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 158/452 (34%), Positives = 247/452 (54%), Gaps = 20/452 (4%)

Query: 9   SLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEM 68
           S V      +T  ++ G +  A+ LF+ MP+RNVVSYNAM+S    +GRL+EARRLF+EM
Sbjct: 9   SAVFRSNQELTSLARSGQLAAARRLFEEMPRRNVVSYNAMVSALAHHGRLAEARRLFDEM 68

Query: 69  PERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFN 128
           P RN VSW  M+   +  GRV +AR LF+ MP RN  SW  MV   +R GEL  AR++ +
Sbjct: 69  PRRNPVSWNTMMVACSQHGRVEDARGLFDAMPARNEYSWTIMVSCYVRAGELTLARELLD 128

Query: 129 SMP-IKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYC 187
            MP  K    +N MI+GY +     +AI L +EM   ++V+W S++ G  R  E+     
Sbjct: 129 RMPGEKCAACYNTMISGYAKNGRFEDAIALLQEMPAPDIVSWNSVLGGLIRNEEISRSVQ 188

Query: 188 LFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIR 247
            F  MP K++VSW  M+ G+   G    +   F  +        + NV S  +++NGY +
Sbjct: 189 FFDEMPDKDLVSWNLMLEGYVRAGDLDVASAFFSRIP-------SPNVISWVNLVNGYCQ 241

Query: 248 FGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGL 307
            GR+ EA+ LFD +P R+ ++W  ++ GY+   QV  AY LF  MP++++++WT M+SG 
Sbjct: 242 AGRMGEARELFDRMPERNVVAWNVLLSGYVQFSQVEAAYNLFIEMPEKNSISWTTMVSGF 301

Query: 308 VQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDL 367
           V++    EA  +  +M +  V    A  +++ G   +   ID  RQ+   ++      D 
Sbjct: 302 VRSGKLQEAKDVLSKMPSDNV---GAKTALMHGYLKSNL-IDDARQLFDGIVVR----DA 353

Query: 368 ILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLES 427
           +  N +IS Y +CG++D A  +F  M ++D++SWN+M+ G +  G   +   +F  M   
Sbjct: 354 VCWNTMISGYVQCGMLDEAMVLFQQMPNKDMISWNTMIAGCAQGGQIRKAASIFRKM--- 410

Query: 428 GTHPNSVTFLGILSACSHAGLVSRGWELFNAM 459
               N+V++  I+S     GL     + F  M
Sbjct: 411 -KRRNTVSWNSIISGFVQNGLFVEALQHFMLM 441



 Score =  226 bits (576), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 145/530 (27%), Positives = 254/530 (47%), Gaps = 99/530 (18%)

Query: 7   PKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFE 66
           P   V+   + +  Y + G + EA+ LF  MP+RNVV++N +LSG++Q  ++  A  LF 
Sbjct: 225 PSPNVISWVNLVNGYCQAGRMGEARELFDRMPERNVVAWNVLLSGYVQFSQVEAAYNLFI 284

Query: 67  EMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKV 126
           EMPE+N +SWT M+ G   +G++ EA+ +  +MP  NV +  +++ G +++  +++AR++
Sbjct: 285 EMPEKNSISWTTMVSGFVRSGKLQEAKDVLSKMPSDNVGAKTALMHGYLKSNLIDDARQL 344

Query: 127 FNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGY 186
           F+ + +++ + WN MI+GYV+C M+ EA+VLF++M  +++++W +MI+G  + G++ +  
Sbjct: 345 FDGIVVRDAVCWNTMISGYVQCGMLDEAMVLFQQMPNKDMISWNTMIAGCAQGGQIRKAA 404

Query: 187 CLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSC-------- 238
            +FR+M R+N VSW ++I GF  NG   E+L  F+ M+    + + C    C        
Sbjct: 405 SIFRKMKRRNTVSWNSIISGFVQNGLFVEALQHFMLMRRDAKSADWCTYACCLSASANLA 464

Query: 239 ------------------------NSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMID 274
                                   N++I+ Y + GR+ EA+ +FD + V+D +SW ++ID
Sbjct: 465 TLQIGRQFHSLLVRTGFISDSSPGNALISAYAKCGRMLEARQVFDEMVVQDIVSWNALID 524

Query: 275 GYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNAT 334
           GY S G  S                               E   +F EM A+ V P   T
Sbjct: 525 GYASNGNGS-------------------------------EVIAVFREMEANSVRPDEIT 553

Query: 335 FSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMV 394
             V+  A      ID G               L   N +I +Y+   V ++    ++ MV
Sbjct: 554 LVVVLSACSHAGLIDEG---------------LHFFNSMIKLYSLKPVAEH----YTCMV 594

Query: 395 SRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWE 454
             DL+            G A    + FE +      PN+  +  +L AC         W 
Sbjct: 595 --DLL------------GRAGRLREAFELVQGMQIQPNAGVWGALLGACRVHKNHEIAWL 640

Query: 455 LFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIW 504
               +F++   +    +YV + N+   AGK  +A++      ++P H +W
Sbjct: 641 AAEKLFELEPCKAS--NYVLLSNICVEAGKWDDADK-CYGASWKPRHCLW 687


>gi|297848224|ref|XP_002891993.1| hypothetical protein ARALYDRAFT_337864 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297337835|gb|EFH68252.1| hypothetical protein ARALYDRAFT_337864 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 950

 Score =  410 bits (1054), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 213/585 (36%), Positives = 335/585 (57%), Gaps = 8/585 (1%)

Query: 4   RNHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARR 63
           R +  S  V+ +  I++ S+ G I+EA+  F  +  + + S+N+++SG+  NG   EAR+
Sbjct: 10  RAYSTSTGVNNSFEISRLSRIGQINEARKFFDSLRYKAIGSWNSIVSGYFANGLPREARQ 69

Query: 64  LFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEA 123
           +F+EMPERN+VSW  ++ G      + EAR +FE MPERNVVSW +MV G ++ G + EA
Sbjct: 70  MFDEMPERNIVSWNGLVSGYIKNRMIEEARNVFEIMPERNVVSWTAMVKGYVQEGMVVEA 129

Query: 124 RKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVE 183
             +F  MP +N +SW  M  G ++   + +A  L++ M  ++VV  T+MI G CR G V+
Sbjct: 130 ELLFWRMPERNEVSWTVMFGGLIDGGRIDDARKLYDMMPGKDVVASTNMIGGLCREGRVD 189

Query: 184 EGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMIN 243
           E   +F  M  +NV++WT MI G+  N     +  LF  M    +        S  SM+ 
Sbjct: 190 EAREIFDEMRERNVITWTTMITGYGQNKRVDVARKLFEVMPEKTE-------VSWTSMLL 242

Query: 244 GYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAM 303
           GY   GR+E+A+  F+ +P++  I+  +MI     VG++  A  +F  M DRD   W  M
Sbjct: 243 GYTLSGRIEDAEEFFEVMPMKPVIACNAMIVALGEVGEIVKARRVFDQMEDRDNATWRGM 302

Query: 304 ISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTES 363
           I    +    +EA  LF +M+  GV P   +   +       A++  GRQ+H  L++ + 
Sbjct: 303 IKAYERKGFELEALELFAQMQRQGVRPSFPSLISILSVCATLASLQYGRQVHAHLVRCQF 362

Query: 364 ESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFES 423
           + D+ + + L++MY KCG +  A  +F    S+D++ WNS++ G++ HGL  E LKVF  
Sbjct: 363 DGDVYVASVLMTMYVKCGELVKAKLVFDRFPSKDIIMWNSIISGYASHGLGEEALKVFHE 422

Query: 424 MLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAG 483
           M  SGT PN VT + IL+ACS+ G +  G E+F +M   + + P  EHY   +++LGRAG
Sbjct: 423 MPLSGTMPNKVTLIAILTACSYGGKLEEGLEIFESMESKFCVTPTVEHYSCTVDMLGRAG 482

Query: 484 KIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLC 543
           K+ +A E +  +  +PD  +WGALLGAC       ++AE AAK+L E++P NA  +++L 
Sbjct: 483 KVDKAMELINSMTIKPDATVWGALLGACK-THSRLDLAEVAAKKLFEIEPENAGPYILLS 541

Query: 544 NIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSG 588
           +I A+  +  +  ++R +M  K V K PGCSW+     + MF  G
Sbjct: 542 SINASRSKWGDVAEMRKNMRTKNVSKFPGCSWIEVGKKVHMFTRG 586



 Score = 46.6 bits (109), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 41/169 (24%), Positives = 76/169 (44%), Gaps = 20/169 (11%)

Query: 352 RQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHH 411
           + +  +L +  S S  +  +  IS  ++ G I+ A   F ++  + + SWNS+V G+  +
Sbjct: 2   KSLKLILHRAYSTSTGVNNSFEISRLSRIGQINEARKFFDSLRYKAIGSWNSIVSGYFAN 61

Query: 412 GLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEH 471
           GL  E  ++F+ M E     N V++ G++S      ++     +F  M         PE 
Sbjct: 62  GLPREARQMFDEMPER----NIVSWNGLVSGYIKNRMIEEARNVFEIM---------PER 108

Query: 472 ----YVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEG 516
               + +M+    + G + EAE    R+P E +   W  + G  G  +G
Sbjct: 109 NVVSWTAMVKGYVQEGMVVEAELLFWRMP-ERNEVSWTVMFG--GLIDG 154


>gi|357112489|ref|XP_003558041.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Brachypodium distachyon]
          Length = 706

 Score =  410 bits (1054), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 221/592 (37%), Positives = 347/592 (58%), Gaps = 10/592 (1%)

Query: 11  VVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPE 70
           VV   + I    + G I+ A+A F  MP R   SYNA+++G+ +N     A  LF  MP 
Sbjct: 17  VVAANARIAWLVRAGNIEGARAAFDAMPLRTTASYNALIAGYFRNHLPDAALGLFHRMPS 76

Query: 71  RNVVSWTAMICGLA-DAGRVCEARKLFEEMP-ERNVVSWNSMVVGLIRNGELNEARKVFN 128
           R++ S+ A+I GL+     + +A      +P   +VVS+ S++ G +R+G L +A ++F+
Sbjct: 77  RDLGSYNALIAGLSLRRHTLPDAAAALASIPLPPSVVSFTSLLRGYVRHGLLADAIRLFH 136

Query: 129 SMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCL 188
            MP +N +++  ++ G+++   + EA  LF+EM +++VV  T+M+SGYC+AG + E   L
Sbjct: 137 QMPERNHVTYTVLLGGFLDAGRVNEARKLFDEMPDKDVVARTAMLSGYCQAGRITEARAL 196

Query: 189 FRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRF 248
           F  MP++NVVSWTAMI G+A NG    +  LF  M        + N  S  +M+ GYI+ 
Sbjct: 197 FDEMPKRNVVSWTAMISGYAQNGKVILARKLFEVMP-------DRNEVSWTAMLVGYIQA 249

Query: 249 GRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLV 308
           G +E+A++LF+ +P     +  +M+ G+   G V  A  +F  M  RD   W+AMI    
Sbjct: 250 GHVEDAEDLFNAMPDHPVAACNAMMVGFGQHGMVDAAKAMFERMCARDDGTWSAMIKVYE 309

Query: 309 QNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLI 368
           QNE  +EA   F EM   G+ P   +F  +     A A  D GR++H  +++   ++D+ 
Sbjct: 310 QNEFLMEALSTFREMLCRGIRPNYTSFISILTVCAALATADYGRELHAAMLRCSFDTDVF 369

Query: 369 LENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESG 428
             + LI+MY KCG +D A  +F+    +D+V WNSM+ G++ HGL  E L +F+ +  + 
Sbjct: 370 AVSALITMYIKCGNLDKAKRVFNMFEPKDVVMWNSMITGYAQHGLGEEALGIFDDLRLAR 429

Query: 429 THPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEA 488
             P+ +T++G+L+ACS+ G V  G E+FN+M     I+ G  HY  M++LLGRAG + EA
Sbjct: 430 MAPDGITYIGVLTACSYTGKVKEGREIFNSMGMNSSIRLGAAHYSCMVDLLGRAGLVDEA 489

Query: 489 EEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAA 548
            + +  +P EPD  IWGAL+GAC     NAEIAE AAK+LLEL+P +A  +V+L +IY +
Sbjct: 490 LDLINNMPVEPDAIIWGALMGACRM-HKNAEIAEVAAKKLLELEPGSAGPYVLLSHIYTS 548

Query: 549 SGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEILL 600
           +GR  +   +R  +  + + K PGCSW+  N  + +F SGD +      I+L
Sbjct: 549 TGRWEDASDMRKFISSRNLNKSPGCSWIEYNKMVHLFTSGDVLSHPEHAIIL 600



 Score =  162 bits (410), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 108/350 (30%), Positives = 180/350 (51%), Gaps = 62/350 (17%)

Query: 7   PKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFE 66
           P   VV  T+ ++ Y + G I EA+ALF  MP+RNVVS+ AM+SG+ QNG++  AR+LFE
Sbjct: 170 PDKDVVARTAMLSGYCQAGRITEARALFDEMPKRNVVSWTAMISGYAQNGKVILARKLFE 229

Query: 67  EMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKV 126
            MP+RN VSWTAM+ G   AG V +A  LF  MP+  V + N+M+VG  ++G ++ A+ +
Sbjct: 230 VMPDRNEVSWTAMLVGYIQAGHVEDAEDLFNAMPDHPVAACNAMMVGFGQHGMVDAAKAM 289

Query: 127 FNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEER---------------------- 164
           F  M  ++  +W+AMI  Y +   + EA+  F EM  R                      
Sbjct: 290 FERMCARDDGTWSAMIKVYEQNEFLMEALSTFREMLCRGIRPNYTSFISILTVCAALATA 349

Query: 165 -----------------NVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGF 207
                            +V   +++I+ Y + G +++   +F     K+VV W +MI G+
Sbjct: 350 DYGRELHAAMLRCSFDTDVFAVSALITMYIKCGNLDKAKRVFNMFEPKDVVMWNSMITGY 409

Query: 208 AWNGFHKESLLLFIEMK-------GICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDT 260
           A +G  +E+L +F +++       GI   G    + +C+         G+++E + +F++
Sbjct: 410 AQHGLGEEALGIFDDLRLARMAPDGITYIG---VLTACSYT-------GKVKEGREIFNS 459

Query: 261 VPVRDEIS-----WTSMIDGYLSVGQVSNAYYLFHNMP-DRDAVAWTAMI 304
           + +   I      ++ M+D     G V  A  L +NMP + DA+ W A++
Sbjct: 460 MGMNSSIRLGAAHYSCMVDLLGRAGLVDEALDLINNMPVEPDAIIWGALM 509


>gi|297728297|ref|NP_001176512.1| Os11g0433100 [Oryza sativa Japonica Group]
 gi|62701919|gb|AAX92992.1| hypothetical protein LOC_Os11g24530 [Oryza sativa Japonica Group]
 gi|77550326|gb|ABA93123.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|125534237|gb|EAY80785.1| hypothetical protein OsI_35965 [Oryza sativa Indica Group]
 gi|125577016|gb|EAZ18238.1| hypothetical protein OsJ_33779 [Oryza sativa Japonica Group]
 gi|255680048|dbj|BAH95240.1| Os11g0433100 [Oryza sativa Japonica Group]
          Length = 622

 Score =  409 bits (1051), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 211/538 (39%), Positives = 321/538 (59%), Gaps = 12/538 (2%)

Query: 56  GRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPE--RNVVSWNSMVVG 113
           GR+S+ARRLF+ MP+R+VVSWTAM+   A  G + EAR LF+  P+  RNVV+W +++ G
Sbjct: 55  GRVSDARRLFDGMPDRDVVSWTAMVAAYARRGMLQEARVLFDR-PDARRNVVTWTALLSG 113

Query: 114 LIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMI 173
             R   ++EA  +F  M  +NV+SWN M+  Y     + +A  LF  M  R+  +W  ++
Sbjct: 114 YARARRVDEAEALFEGMAERNVVSWNTMLEAYTAVGRVEDASALFNRMPVRDAGSWNILL 173

Query: 174 SGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNC 233
            G  R+G +E    +F RMP ++V+SWT MI G A NG   ++ +LF  M          
Sbjct: 174 CGLVRSGSLERARKMFERMPVRDVMSWTTMISGLARNGSVDDAWVLFDAMP-------ER 226

Query: 234 NVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMP 293
           NV S N+MI+GY R  R+EEA +LF  +P+RD  SW  MI G++    + +A  LF  MP
Sbjct: 227 NVVSWNAMISGYARNHRIEEALDLFTKMPIRDVASWNIMITGFIQNKDLKSARQLFDEMP 286

Query: 294 DRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQ 353
            R+ + WT M++G +Q      A  LF  M   G+ P   TF     A    A +  G+Q
Sbjct: 287 KRNVITWTTMMNGYLQCMQSEMALKLFNCMLVQGIQPNQVTFLGSLDACSNLAALCEGQQ 346

Query: 354 IHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGL 413
           +H ++ KT S+ D  +E+ L+++YAKCG I  A N+F   + +DL+SWN ++  ++HHG 
Sbjct: 347 VHQMICKTPSQFDTFVESTLMNLYAKCGEIRLARNVFDFSMEKDLISWNGIIAAYAHHGF 406

Query: 414 ANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYV 473
             E + ++++M E+G  PN  T++G+LSACSHAGLV  G ++F +M     I    EHY 
Sbjct: 407 GIEAMHLYKNMQENGYKPNDATYVGLLSACSHAGLVDEGLKIFESMVKDNSIVVRDEHYT 466

Query: 474 SMINLLGRAGKIKEAEEFVLRLPFEP-DHRIWGALLGACGFCEGNAEIAEHAAKRLLELD 532
            +++L  RAG++++A+  +     +P    +W ALLG C    GN  I + AAK LLE +
Sbjct: 467 CLVDLCSRAGRLEDAKRLISWFKIKPTSSTVWSALLGGCN-SHGNESIGDLAAKHLLEAE 525

Query: 533 PLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDK 590
           P NA  + +LCNIYA++G+  E  ++R +M ++G++K PGCSW+     + +F+S DK
Sbjct: 526 PDNAGTYTLLCNIYASAGKWKEAAEIRSEMNVRGLKKQPGCSWIEVANKVHVFVSRDK 583



 Score =  232 bits (592), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 156/510 (30%), Positives = 256/510 (50%), Gaps = 60/510 (11%)

Query: 7   PKSLVVHLTSSITKYSKRGFIDEAKALF-QLMPQRNVVSYNAMLSGFLQNGRLSEARRLF 65
           P   VV  T+ +  Y++RG + EA+ LF +   +RNVV++ A+LSG+ +  R+ EA  LF
Sbjct: 68  PDRDVVSWTAMVAAYARRGMLQEARVLFDRPDARRNVVTWTALLSGYARARRVDEAEALF 127

Query: 66  EEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARK 125
           E M ERNVVSW  M+      GRV +A  LF  MP R+  SWN ++ GL+R+G L  ARK
Sbjct: 128 EGMAERNVVSWNTMLEAYTAVGRVEDASALFNRMPVRDAGSWNILLCGLVRSGSLERARK 187

Query: 126 VFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEG 185
           +F  MP+++V+SW  MI+G      + +A VLF+ M ERNVV+W +MISGY R   +EE 
Sbjct: 188 MFERMPVRDVMSWTTMISGLARNGSVDDAWVLFDAMPERNVVSWNAMISGYARNHRIEEA 247

Query: 186 YCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGY 245
             LF +MP ++V SW  MI GF  N   K +  LF EM          NV +  +M+NGY
Sbjct: 248 LDLFTKMPIRDVASWNIMITGFIQNKDLKSARQLFDEMP-------KRNVITWTTMMNGY 300

Query: 246 IRFGRLEEAQNLFDTVPVR---------------------------------------DE 266
           ++  + E A  LF+ + V+                                       D 
Sbjct: 301 LQCMQSEMALKLFNCMLVQGIQPNQVTFLGSLDACSNLAALCEGQQVHQMICKTPSQFDT 360

Query: 267 ISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAH 326
              +++++ Y   G++  A  +F    ++D ++W  +I+    +   +EA +L+  M+ +
Sbjct: 361 FVESTLMNLYAKCGEIRLARNVFDFSMEKDLISWNGIIAAYAHHGFGIEAMHLYKNMQEN 420

Query: 327 GVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILEN----CLISMYAKCGV 382
           G  P +AT+  L  A      +D G +I   ++K  S   +++ +    CL+ + ++ G 
Sbjct: 421 GYKPNDATYVGLLSACSHAGLVDEGLKIFESMVKDNS---IVVRDEHYTCLVDLCSRAGR 477

Query: 383 IDNAYNIFSNMVSRDLVS--WNSMVMGFSHHGLANETL-KVFESMLESGTHPNSVTFLGI 439
           +++A  + S    +   S  W++++ G + HG  NE++  +    L      N+ T+  +
Sbjct: 478 LEDAKRLISWFKIKPTSSTVWSALLGGCNSHG--NESIGDLAAKHLLEAEPDNAGTYTLL 535

Query: 440 LSACSHAGLVSRGWELFNAM-FDVYKIQPG 468
            +  + AG      E+ + M     K QPG
Sbjct: 536 CNIYASAGKWKEAAEIRSEMNVRGLKKQPG 565



 Score =  172 bits (436), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 118/382 (30%), Positives = 190/382 (49%), Gaps = 22/382 (5%)

Query: 132 IKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRR 191
           + +V   N  +A       + +A  LF+ M +R+VV+WT+M++ Y R G ++E   LF R
Sbjct: 38  VNHVQDSNWRVAELAAAGRVSDARRLFDGMPDRDVVSWTAMVAAYARRGMLQEARVLFDR 97

Query: 192 M-PRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGR 250
              R+NVV+WTA++ G+A      E+  LF   +G+ +     NV S N+M+  Y   GR
Sbjct: 98  PDARRNVVTWTALLSGYARARRVDEAEALF---EGMAER----NVVSWNTMLEAYTAVGR 150

Query: 251 LEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQN 310
           +E+A  LF+ +PVRD  SW  ++ G +  G +  A  +F  MP RD ++WT MISGL +N
Sbjct: 151 VEDASALFNRMPVRDAGSWNILLCGLVRSGSLERARKMFERMPVRDVMSWTTMISGLARN 210

Query: 311 ELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILE 370
               +A  LF  M    V   NA  S      G   N  +   +   L       D+   
Sbjct: 211 GSVDDAWVLFDAMPERNVVSWNAMIS------GYARNHRIEEALD--LFTKMPIRDVASW 262

Query: 371 NCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTH 430
           N +I+ + +   + +A  +F  M  R++++W +M+ G+     +   LK+F  ML  G  
Sbjct: 263 NIMITGFIQNKDLKSARQLFDEMPKRNVITWTTMMNGYLQCMQSEMALKLFNCMLVQGIQ 322

Query: 431 PNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYV--SMINLLGRAGKIKEA 488
           PN VTFLG L ACS+   +  G ++      + K     + +V  +++NL  + G+I+ A
Sbjct: 323 PNQVTFLGSLDACSNLAALCEGQQVHQM---ICKTPSQFDTFVESTLMNLYAKCGEIRLA 379

Query: 489 EEFVLRLPFEPDHRIWGALLGA 510
              V     E D   W  ++ A
Sbjct: 380 RN-VFDFSMEKDLISWNGIIAA 400


>gi|242063912|ref|XP_002453245.1| hypothetical protein SORBIDRAFT_04g002445 [Sorghum bicolor]
 gi|241933076|gb|EES06221.1| hypothetical protein SORBIDRAFT_04g002445 [Sorghum bicolor]
          Length = 603

 Score =  409 bits (1050), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 215/607 (35%), Positives = 338/607 (55%), Gaps = 43/607 (7%)

Query: 23  KRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICG 82
           + G +  A+ +F  M +RNV ++N M+SG ++NG L++AR +F+ MP RN VSW A++ G
Sbjct: 5   RAGRVGAARRVFDEMSERNVFTWNCMISGLVRNGMLTDARGVFDTMPFRNSVSWAALLTG 64

Query: 83  LADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISW---- 138
            A  GRV EAR+LF+ MP+R+VVSWN+M+ G + NG ++ AR +F+ MP +N +SW    
Sbjct: 65  YARCGRVAEARELFDRMPDRSVVSWNAMISGYLWNGMVDRARDLFDVMPARNDVSWLMMI 124

Query: 139 ---------------------------NAMIAGYVECCMMGEAIVLFEEMEERNVVTWTS 171
                                      NA+++GY E   + +A  LF  M+  ++V+W +
Sbjct: 125 SGYMKRKRVREAREIFDRAPSPTTSVCNALLSGYAEHGYLKDAEDLFGRMQTPDLVSWNA 184

Query: 172 MISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGN 231
           MI+GY RAG ++    LF  MP K+ VSWTA++ G+  NG    +  +F +M        
Sbjct: 185 MITGYTRAGMMQVAQRLFDEMPEKDTVSWTAIVRGYLQNGDVDAAWKVFQDMP------- 237

Query: 232 NCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHN 291
           + +V + N+M++G++   RL++A  LF  +P RD +SW +++ GY+  G +  A   F  
Sbjct: 238 DRDVLAWNTMMSGFVVSERLDDALRLFADMPDRDLVSWNTILQGYVQQGDMDGATAWFRK 297

Query: 292 MPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLG 351
           MP++D  +W  +ISG         A  L  EM   G  P  AT+SV      + A +  G
Sbjct: 298 MPEKDEASWNTLISGYKDE----GALNLLSEMTQGGYRPDQATWSVAISICSSLAALGCG 353

Query: 352 RQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHH 411
           R +H   +KT  E D ++ + LISMY+KCG+I  A  +F  +V RD V+WN+M+  +++H
Sbjct: 354 RMVHVCTIKTGFERDALVMSSLISMYSKCGLITEASQVFDLIVQRDTVTWNAMIATYAYH 413

Query: 412 GLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEH 471
           GLA E L +F+ M + G  P+  TFL +LSAC+H G +  G   F +M   + + P  +H
Sbjct: 414 GLAAEALTLFDRMTKDGFSPDHATFLSVLSACAHKGYLYEGCHHFRSMQQDWNLIPRSDH 473

Query: 472 YVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLEL 531
           Y  M++LLGR+G + +A  F  R+P +     W  L  +C    G+ ++ E  AK +L+ 
Sbjct: 474 YSCMVDLLGRSGFVHQAYNFTRRIPSDLQINAWETLFSSCN-AHGDIQLGELVAKNVLQS 532

Query: 532 DPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKI 591
            P +   + +L NIYAA G       +R  M  +G++K  GCSW+   G +  F S DK 
Sbjct: 533 RPSDGGMYTLLSNIYAAKGMWSSAASVRGLMKEQGLKKETGCSWIELKGDVVSFSSNDKA 592

Query: 592 PAQVAEI 598
              + +I
Sbjct: 593 HPLIEQI 599



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 66/241 (27%), Positives = 111/241 (46%), Gaps = 27/241 (11%)

Query: 244 GYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAM 303
            + R GR+  A+ +FD +  R+  +W  MI G +  G +++A  +F  MP R++V+W A+
Sbjct: 2   AHFRAGRVGAARRVFDEMSERNVFTWNCMISGLVRNGMLTDARGVFDTMPFRNSVSWAAL 61

Query: 304 ISGLVQNELFVEATYLFMEMRAHGVPPLNATFS------------VLFGAAGATANIDLG 351
           ++G  +     EA  LF  M    V   NA  S             LF    A  ++   
Sbjct: 62  LTGYARCGRVAEARELFDRMPDRSVVSWNAMISGYLWNGMVDRARDLFDVMPARNDVSWL 121

Query: 352 RQIHCVLMKTE-SESDLILE----------NCLISMYAKCGVIDNAYNIFSNMVSRDLVS 400
             I   + +    E+  I +          N L+S YA+ G + +A ++F  M + DLVS
Sbjct: 122 MMISGYMKRKRVREAREIFDRAPSPTTSVCNALLSGYAEHGYLKDAEDLFGRMQTPDLVS 181

Query: 401 WNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMF 460
           WN+M+ G++  G+     ++F+ M E  T    V++  I+      G V   W++F  M 
Sbjct: 182 WNAMITGYTRAGMMQVAQRLFDEMPEKDT----VSWTAIVRGYLQNGDVDAAWKVFQDMP 237

Query: 461 D 461
           D
Sbjct: 238 D 238



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 81/163 (49%), Gaps = 13/163 (7%)

Query: 14  LTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNV 73
           ++S I+ YSK G I EA  +F L+ QR+ V++NAM++ +  +G  +EA  LF+ M +   
Sbjct: 372 MSSLISMYSKCGLITEASQVFDLIVQRDTVTWNAMIATYAYHGLAAEALTLFDRMTKDGF 431

Query: 74  ----VSWTAMICGLADAGRVCEARKLFEEMPER-NVVS----WNSMVVGLIRNGELNEAR 124
                ++ +++   A  G + E    F  M +  N++     ++ MV  L R+G +++A 
Sbjct: 432 SPDHATFLSVLSACAHKGYLYEGCHHFRSMQQDWNLIPRSDHYSCMVDLLGRSGFVHQAY 491

Query: 125 KVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVV 167
                +P    I  NA    +  C   G+  +   E+  +NV+
Sbjct: 492 NFTRRIPSDLQI--NAWETLFSSCNAHGD--IQLGELVAKNVL 530


>gi|449467189|ref|XP_004151307.1| PREDICTED: pentatricopeptide repeat-containing protein At1g53600,
           mitochondrial-like [Cucumis sativus]
          Length = 711

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 223/658 (33%), Positives = 365/658 (55%), Gaps = 62/658 (9%)

Query: 2   SERNHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEA 61
           + R      +V+  S ITK  + G I EA+++F  MP +N VS+ A+L+ + +N  +++A
Sbjct: 38  ATRQKSSKFLVYCNSQITKLGRNGCIKEAESIFNRMPNKNTVSWTALLTAYAENSEINKA 97

Query: 62  RRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLI------ 115
           R +F ++P+ NV S+ AMI        V EA +LF  MP+RN VS+ +M+ G +      
Sbjct: 98  REVFNKIPDPNVASYNAMITAYHRRNMVDEAFELFSSMPQRNSVSYATMITGFVHAGMFD 157

Query: 116 -----------------------RNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMG 152
                                  + G + +A ++F+ M  K+V+SW++MI+G      + 
Sbjct: 158 MAEKLHREKPVIVSSNVLINGYSKVGRVEDAVRIFDGMAEKDVVSWSSMISGLCRVGKIV 217

Query: 153 EAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRK----NVVSWTAMI---G 205
           EA  LF++M +RNVVTWT MI GY +   +++G+ LF  M R+    N  + T ++   G
Sbjct: 218 EARKLFDKMPDRNVVTWTLMIDGYMKMNFLKDGFILFLNMRREGVEVNATTLTVLLEACG 277

Query: 206 GFAWNG----FHKESLLLFIEMKGICDNG-----NNC----------------NVQSCNS 240
            F   G     H   L L  ++     N      + C                ++ + NS
Sbjct: 278 SFDRYGEGIQIHGLVLSLGFDVDAYLANSIITMYSRCYSIDAAAKQFDLMVKKDIVTWNS 337

Query: 241 MINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAW 300
           +I GY++ G LE+A  LF+ +P +D +SWT++I G+ S G++     LF  MP++DA+AW
Sbjct: 338 LITGYVQSGNLEKAVFLFENMPQKDVVSWTTLICGFASEGRIDEFIGLFQMMPEKDAIAW 397

Query: 301 TAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMK 360
           TA+ISGLV  E +  A + F++M    + P   T S +  A  + A ++ G QIH ++ K
Sbjct: 398 TAVISGLVSIEEYEIAFHWFIKMLQSVIKPNAFTLSCVLSAGASMAILNQGLQIHAIVTK 457

Query: 361 TESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKV 420
              E+DL ++N L+SMY+KCG +D+A  +F  +   ++V++N+++ G + +GL  E L++
Sbjct: 458 MSMENDLSIQNSLVSMYSKCGNVDDALKMFYYIKVPNVVAYNTIITGLAQNGLGKEALEI 517

Query: 421 FESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLG 480
           F  M +    PN +TFLG+LSAC H GLV  G   F+ M  +Y IQP P+HY  M++LL 
Sbjct: 518 FTKMQDDYLVPNHITFLGVLSACVHVGLVEEGRRYFDLMRSLYDIQPEPDHYACMVDLLC 577

Query: 481 RAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHV 540
           RAG   EA   V  +PF+P   +WGA+LGA  +     ++AE AA+ L EL+P +A  +V
Sbjct: 578 RAGMFDEAVSLVSSMPFDPHQGVWGAVLGA-SWTHLRLDVAELAAQNLFELEPNSATPYV 636

Query: 541 VLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
           +L N+++ SG   +   +R+    +G++K PGCSW++    + +F +G +    + E+
Sbjct: 637 ILSNLHSISGDERKHELIRLMKKSRGLKKSPGCSWIILKDEVHLFHAGHQSIKNIKEM 694


>gi|297739912|emb|CBI30094.3| unnamed protein product [Vitis vinifera]
          Length = 614

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 214/557 (38%), Positives = 328/557 (58%), Gaps = 46/557 (8%)

Query: 41  NVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEM- 99
           NV   N M++   ++GR+ EARRLF+EM E +V++WT +I G    G + EAR+LF+ + 
Sbjct: 66  NVARCNWMITNLSKDGRIMEARRLFDEMREPDVITWTTVISGYIKCGMIEEARRLFDRVD 125

Query: 100 PERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFE 159
            ++NVV+W +MV G IR+ ++++A K+FN MP KNV+SWN MI GY +   +  A+ LFE
Sbjct: 126 AKKNVVTWTAMVGGYIRSNKISDAEKLFNEMPNKNVVSWNTMIDGYAQNGRIDSAMYLFE 185

Query: 160 EMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLL 219
           +M ERNVV+W +++S   + G +EE   LF RMP ++V+SWTAMI G        E+L L
Sbjct: 186 KMPERNVVSWNTVMSMLAQCGRIEEARRLFDRMPERDVISWTAMIAGLL-----DEALDL 240

Query: 220 FIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSV 279
           F  M          ++ S N+MI G I+ G L  A+ LF+ +P ++ ISWT+MI G +  
Sbjct: 241 FERMP-------ERDLPSWNTMITGLIQNGDLRRARKLFNEMPKKNVISWTTMITGCVQE 293

Query: 280 GQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLF 339
           G+   A  +F  M                              +  +G  P   TF  + 
Sbjct: 294 GESEEALKIFSRM------------------------------LSTNGAKPNQGTFVSVL 323

Query: 340 GAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVS--RD 397
           GA    A +  G+Q+H ++ KT  +    + + LI+MY+KCG +  A  +F + ++  RD
Sbjct: 324 GACSNLAGLGEGQQVHQIISKTVYQDSTFVVSALINMYSKCGELGTARKMFDDGMTSQRD 383

Query: 398 LVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFN 457
           LVSWN ++  ++HHG   E +  F+ M +SG  P+ VT++G+LSACSHAGLV  G + F+
Sbjct: 384 LVSWNGIIAAYAHHGYGKEAINFFKEMRKSGFKPDDVTYVGLLSACSHAGLVEEGLKYFD 443

Query: 458 AMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGN 517
            +     I    +HY  +++L GRAG++KEA  F+ RL  +P  R+WGALL  C     N
Sbjct: 444 ELVKDRSILVREDHYACLVDLCGRAGRLKEAFGFIERLETKPSARVWGALLAGCN-VHAN 502

Query: 518 AEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLM 577
            +I + AAK+LLE++P NA  +++L NIYA++G+  E  ++R+ M  KG++K PGCSW+ 
Sbjct: 503 VKIGKQAAKKLLEVEPENAGTYLLLSNIYASTGKWREAARVRLKMKDKGLKKQPGCSWIE 562

Query: 578 RNGGIQMFLSGDKIPAQ 594
               + +F+ GDK  +Q
Sbjct: 563 VGNRVHVFVVGDKSHSQ 579



 Score =  233 bits (594), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 153/471 (32%), Positives = 248/471 (52%), Gaps = 24/471 (5%)

Query: 11  VVHLTSSITKYSKRGFIDEAKALF-QLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMP 69
           V+  T+ I+ Y K G I+EA+ LF ++  ++NVV++ AM+ G++++ ++S+A +LF EMP
Sbjct: 98  VITWTTVISGYIKCGMIEEARRLFDRVDAKKNVVTWTAMVGGYIRSNKISDAEKLFNEMP 157

Query: 70  ERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNS 129
            +NVVSW  MI G A  GR+  A  LFE+MPERNVVSWN+++  L + G + EAR++F+ 
Sbjct: 158 NKNVVSWNTMIDGYAQNGRIDSAMYLFEKMPERNVVSWNTVMSMLAQCGRIEEARRLFDR 217

Query: 130 MPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLF 189
           MP ++VISW AMIAG     ++ EA+ LFE M ER++ +W +MI+G  + G++     LF
Sbjct: 218 MPERDVISWTAMIAG-----LLDEALDLFERMPERDLPSWNTMITGLIQNGDLRRARKLF 272

Query: 190 RRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFG 249
             MP+KNV+SWT MI G    G  +E+L +F  M  +  NG   N  +  S++       
Sbjct: 273 NEMPKKNVISWTTMITGCVQEGESEEALKIFSRM--LSTNGAKPNQGTFVSVLGACSNLA 330

Query: 250 RLEEAQNLFD----TVPVRDEISWTSMIDGYLSVGQVSNAYYLFHN--MPDRDAVAWTAM 303
            L E Q +      TV        +++I+ Y   G++  A  +F +     RD V+W  +
Sbjct: 331 GLGEGQQVHQIISKTVYQDSTFVVSALINMYSKCGELGTARKMFDDGMTSQRDLVSWNGI 390

Query: 304 ISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTES 363
           I+    +    EA   F EMR  G  P + T+  L  A      ++ G +    L+K   
Sbjct: 391 IAAYAHHGYGKEAINFFKEMRKSGFKPDDVTYVGLLSACSHAGLVEEGLKYFDELVK--D 448

Query: 364 ESDLILEN---CLISMYAKCGVIDNAYNIFSNMVSRDLVS-WNSMVMGFSHHGLANETLK 419
            S L+ E+   CL+ +  + G +  A+     + ++     W +++ G + H       +
Sbjct: 449 RSILVREDHYACLVDLCGRAGRLKEAFGFIERLETKPSARVWGALLAGCNVHANVKIGKQ 508

Query: 420 VFESMLESGTHP-NSVTFLGILSACSHAGLVSRGWELFNAMFDV-YKIQPG 468
             + +LE    P N+ T+L + +  +  G       +   M D   K QPG
Sbjct: 509 AAKKLLE--VEPENAGTYLLLSNIYASTGKWREAARVRLKMKDKGLKKQPG 557


>gi|449530420|ref|XP_004172193.1| PREDICTED: pentatricopeptide repeat-containing protein At1g53600,
           mitochondrial-like, partial [Cucumis sativus]
          Length = 719

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 223/658 (33%), Positives = 365/658 (55%), Gaps = 62/658 (9%)

Query: 2   SERNHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEA 61
           + R      +V+  S ITK  + G I EA+++F  MP +N VS+ A+L+ + +N  +++A
Sbjct: 46  ATRQKSSKFLVYCNSQITKLGRNGCIKEAESIFNRMPNKNTVSWTALLTAYAENSEINKA 105

Query: 62  RRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLI------ 115
           R +F ++P+ NV S+ AMI        V EA +LF  MP+RN VS+ +M+ G +      
Sbjct: 106 REVFNKIPDPNVASYNAMITAYHRRNMVDEAFELFSSMPQRNSVSYATMITGFVHAGMFD 165

Query: 116 -----------------------RNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMG 152
                                  + G + +A ++F+ M  K+V+SW++MI+G      + 
Sbjct: 166 MAEKLHREKPVIVSSNVLINGYSKVGRVEDAVRIFDGMAEKDVVSWSSMISGLCRVGKIV 225

Query: 153 EAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRK----NVVSWTAMI---G 205
           EA  LF++M +RNVVTWT MI GY +   +++G+ LF  M R+    N  + T ++   G
Sbjct: 226 EARKLFDKMPDRNVVTWTLMIDGYMKMNFLKDGFILFLNMRREGVEVNATTLTVLLEACG 285

Query: 206 GFAWNG----FHKESLLLFIEMKGICDNG-----NNC----------------NVQSCNS 240
            F   G     H   L L  ++     N      + C                ++ + NS
Sbjct: 286 SFDRYGEGIQIHGLVLSLGFDVDAYLANSIITMYSRCYSIDAAAKQFDLMVKKDIVTWNS 345

Query: 241 MINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAW 300
           +I GY++ G LE+A  LF+ +P +D +SWT++I G+ S G++     LF  MP++DA+AW
Sbjct: 346 LITGYVQSGNLEKAVFLFENMPQKDVVSWTTLICGFASEGRIDEFIGLFQMMPEKDAIAW 405

Query: 301 TAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMK 360
           TA+ISGLV  E +  A + F++M    + P   T S +  A  + A ++ G QIH ++ K
Sbjct: 406 TAVISGLVSIEEYEIAFHWFIKMLQSVIKPNAFTLSCVLSAGASMAILNQGLQIHAIVTK 465

Query: 361 TESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKV 420
              E+DL ++N L+SMY+KCG +D+A  +F  +   ++V++N+++ G + +GL  E L++
Sbjct: 466 MSMENDLSIQNSLVSMYSKCGNVDDALKMFYYIKVPNVVAYNTIITGLAQNGLGKEALEI 525

Query: 421 FESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLG 480
           F  M +    PN +TFLG+LSAC H GLV  G   F+ M  +Y IQP P+HY  M++LL 
Sbjct: 526 FTKMQDDYLVPNHITFLGVLSACVHVGLVEEGRRYFDLMRSLYDIQPEPDHYACMVDLLC 585

Query: 481 RAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHV 540
           RAG   EA   V  +PF+P   +WGA+LGA  +     ++AE AA+ L EL+P +A  +V
Sbjct: 586 RAGMFDEAVSLVSSMPFDPHQGVWGAVLGA-SWTHLRLDVAELAAQNLFELEPNSATPYV 644

Query: 541 VLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
           +L N+++ SG   +   +R+    +G++K PGCSW++    + +F +G +    + E+
Sbjct: 645 ILSNLHSISGDERKHELIRLMKKSRGLKKSPGCSWIILKDEVHLFHAGHQSIKNIKEM 702


>gi|255559617|ref|XP_002520828.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223539959|gb|EEF41537.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 656

 Score =  407 bits (1045), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 217/585 (37%), Positives = 348/585 (59%), Gaps = 14/585 (2%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWT 77
           I+    RG + EA+ +F  MP+R+ VSY +M++ +L+N  L +A  LF E+PERNVV+ +
Sbjct: 58  ISNLGLRGKVKEARKVFDEMPRRDAVSYASMITVYLKNKDLPQAEILFREIPERNVVADS 117

Query: 78  AMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVIS 137
           AMI G   AGR+ +AR++F++M ERNV SW S+V G  + G ++EA ++FN MP KNV+S
Sbjct: 118 AMISGYVRAGRLDKARQVFDQMVERNVFSWTSLVSGYFKIGNVDEAMRLFNQMPEKNVVS 177

Query: 138 WNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNV 197
           W   + GY +   + EA  +F +M E+N++ WT+M+  Y    E++E + LF +MP++N+
Sbjct: 178 WTTAVVGYAQNGFIDEARDIFNQMPEKNIIAWTAMVKSYVENDEIDEAFELFYQMPQRNL 237

Query: 198 VSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNL 257
            SW  MI G        E++ LF  M          N  S  +++ G  R G +E A+  
Sbjct: 238 YSWNIMISGCINANRLNEAIQLFNSMP-------QRNEVSWTTLVTGLARNGMMELARKY 290

Query: 258 FDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEA- 316
           FD +P +D  +W +MI  Y+  G ++ A  LF+ MP+++ V+W A+I G  +N     + 
Sbjct: 291 FDHMPTKDIAAWNAMITAYVDQGSMAEASNLFNLMPEKNIVSWNALIDGYARNGPESNSL 350

Query: 317 TYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISM 376
            YL + +R++  P      SVL     A  +I    Q H +++    E D +L N L++ 
Sbjct: 351 RYLILMLRSNFKPNETTITSVL----TACDSILELMQAHGLVIHLGFEQDKVLANGLVTT 406

Query: 377 YAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTF 436
           Y++CG + +A  IF  +  +D+VSW +M++ +S+HG     L+VF  ML SG  P+ +TF
Sbjct: 407 YSRCGDVLSARFIFDQLEIKDIVSWTAMILAYSNHGCGPHALQVFARMLRSGAKPDGITF 466

Query: 437 LGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRL- 495
           +G+LSACSHAGLV +G  LF++M   Y ++P  EHY  ++++LGRAG++ +A + V  + 
Sbjct: 467 VGLLSACSHAGLVKKGQMLFDSMSCAYGVEPRAEHYSCLVDILGRAGEMNKAMKVVSEMP 526

Query: 496 PFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEE 555
           P E D  + GALLGAC     +  +A H  ++L+E +P ++ ++V+L N YAA G+  E 
Sbjct: 527 PHECDGAVLGALLGACRL-HKDVGLANHIGEKLIEKEPTSSGSYVLLANAYAACGKWNEF 585

Query: 556 HKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEILL 600
            ++R +M  + V+K PG S +   G   +F   D+   Q+ EI L
Sbjct: 586 AEVRKEMKERNVKKEPGFSQIEVKGKSHVFFVRDRSHPQLEEIYL 630



 Score =  212 bits (539), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 134/433 (30%), Positives = 212/433 (48%), Gaps = 56/433 (12%)

Query: 4   RNHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARR 63
           R  P+  VV  ++ I+ Y + G +D+A+ +F  M +RNV S+ +++SG+ + G + EA R
Sbjct: 106 REIPERNVVADSAMISGYVRAGRLDKARQVFDQMVERNVFSWTSLVSGYFKIGNVDEAMR 165

Query: 64  LFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEA 123
           LF +MPE+NVVSWT  + G A  G + EAR +F +MPE+N+++W +MV   + N E++EA
Sbjct: 166 LFNQMPEKNVVSWTTAVVGYAQNGFIDEARDIFNQMPEKNIIAWTAMVKSYVENDEIDEA 225

Query: 124 RKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVE 183
            ++F  MP +N+ SWN MI+G +    + EAI LF  M +RN V+WT++++G  R G +E
Sbjct: 226 FELFYQMPQRNLYSWNIMISGCINANRLNEAIQLFNSMPQRNEVSWTTLVTGLARNGMME 285

Query: 184 -------------------------------EGYCLFRRMPRKNVVSWTAMIGGFAWNGF 212
                                          E   LF  MP KN+VSW A+I G+A NG 
Sbjct: 286 LARKYFDHMPTKDIAAWNAMITAYVDQGSMAEASNLFNLMPEKNIVSWNALIDGYARNGP 345

Query: 213 HKESLLLFIEMKGICDNGNNCNVQS----CNSMINGYIRFGRLEEAQNLFDTVPV-RDEI 267
              SL   I M       N   + S    C+S++        L +A  L   +   +D++
Sbjct: 346 ESNSLRYLILMLRSNFKPNETTITSVLTACDSIL-------ELMQAHGLVIHLGFEQDKV 398

Query: 268 SWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHG 327
               ++  Y   G V +A ++F  +  +D V+WTAMI     +     A  +F  M   G
Sbjct: 399 LANGLVTTYSRCGDVLSARFIFDQLEIKDIVSWTAMILAYSNHGCGPHALQVFARMLRSG 458

Query: 328 VPPLNATFSVLFGAAGATANIDLGRQI-------HCVLMKTESESDLILENCLISMYAKC 380
             P   TF  L  A      +  G+ +       + V  + E  S      CL+ +  + 
Sbjct: 459 AKPDGITFVGLLSACSHAGLVKKGQMLFDSMSCAYGVEPRAEHYS------CLVDILGRA 512

Query: 381 GVIDNAYNIFSNM 393
           G ++ A  + S M
Sbjct: 513 GEMNKAMKVVSEM 525


>gi|125605235|gb|EAZ44271.1| hypothetical protein OsJ_28890 [Oryza sativa Japonica Group]
          Length = 630

 Score =  406 bits (1044), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 207/531 (38%), Positives = 316/531 (59%), Gaps = 8/531 (1%)

Query: 68  MPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVF 127
           MP R+ V++  MI   A+ G V  AR  F+  PE++ VSWN M+   +RNG + EAR +F
Sbjct: 1   MPVRDSVTYNVMISSHANHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLF 60

Query: 128 NSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYC 187
           NS    +VISWNA+++GYV+   M EA  LF+ M  R+VV+W  M+SGY R G++ E   
Sbjct: 61  NSRTEWDVISWNALMSGYVQWGKMSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARR 120

Query: 188 LFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIR 247
           LF   P ++V +WTA++ G+A NG  +E+  +F  M          N  S N+M+  YI+
Sbjct: 121 LFDAAPVRDVFTWTAVVSGYAQNGMLEEARRVFDAMP-------ERNAVSWNAMVAAYIQ 173

Query: 248 FGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGL 307
              ++EA+ LF+ +P R+  SW +M+ GY   G +  A  +F  MP +DAV+W AM++  
Sbjct: 174 RRMMDEAKELFNMMPCRNVASWNTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAY 233

Query: 308 VQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDL 367
            Q     E   LF+EM   G     + F+ +       A ++ G Q+H  L++       
Sbjct: 234 SQGGCSEETLQLFIEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGVGC 293

Query: 368 ILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLES 427
            + N L++MY KCG +++A N F  M  RD+VSWN+M+ G++ HG   E L++F+ M  +
Sbjct: 294 FVGNALLAMYFKCGNMEDARNAFEEMEERDVVSWNTMIAGYARHGFGKEALEIFDMMRTT 353

Query: 428 GTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKE 487
            T P+ +T +G+L+ACSH+GLV +G   F +M   + +   PEHY  MI+LLGRAG++ E
Sbjct: 354 STKPDDITLVGVLAACSHSGLVEKGISYFYSMHHDFGVTAKPEHYTCMIDLLGRAGRLAE 413

Query: 488 AEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYA 547
           A + +  +PFEPD  +WGALLGA      N E+   AA+++ EL+P NA  +V+L NIYA
Sbjct: 414 AHDLMKDMPFEPDSTMWGALLGASRI-HRNPELGRSAAEKIFELEPENAGMYVLLSNIYA 472

Query: 548 ASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
           +SG+  +  K+R+ M  +GV+KVPG SW+     +  F +GD +  +  +I
Sbjct: 473 SSGKWRDARKMRVMMEERGVKKVPGFSWIEVQNKVHTFSAGDCVHPEKEKI 523



 Score =  229 bits (584), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 121/319 (37%), Positives = 184/319 (57%), Gaps = 34/319 (10%)

Query: 7   PKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFE 66
           P+   V     +  Y + G ++EA+ LF    + +V+S+NA++SG++Q G++SEAR LF+
Sbjct: 33  PEKDAVSWNGMLAAYVRNGRVEEARGLFNSRTEWDVISWNALMSGYVQWGKMSEARELFD 92

Query: 67  EMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKV 126
            MP R+VVSW  M+ G A  G + EAR+LF+  P R+V +W ++V G  +NG L EAR+V
Sbjct: 93  RMPGRDVVSWNIMVSGYARRGDMVEARRLFDAAPVRDVFTWTAVVSGYAQNGMLEEARRV 152

Query: 127 FNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGY 186
           F++MP +N +SWNAM+A Y++  MM EA  LF  M  RNV +W +M++GY +AG +EE  
Sbjct: 153 FDAMPERNAVSWNAMVAAYIQRRMMDEAKELFNMMPCRNVASWNTMLTGYAQAGMLEEAK 212

Query: 187 CLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNN-----CNVQSC--- 238
            +F  MP+K+ VSW AM+  ++  G  +E+L LFIEM G C    N     C + +C   
Sbjct: 213 AVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEM-GRCGEWVNRSAFACVLSTCADI 271

Query: 239 -------------------------NSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMI 273
                                    N+++  Y + G +E+A+N F+ +  RD +SW +MI
Sbjct: 272 AALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCGNMEDARNAFEEMEERDVVSWNTMI 331

Query: 274 DGYLSVGQVSNAYYLFHNM 292
            GY   G    A  +F  M
Sbjct: 332 AGYARHGFGKEALEIFDMM 350


>gi|125548358|gb|EAY94180.1| hypothetical protein OsI_15952 [Oryza sativa Indica Group]
          Length = 655

 Score =  406 bits (1043), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 225/619 (36%), Positives = 350/619 (56%), Gaps = 47/619 (7%)

Query: 4   RNHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARR 63
           + H    V    ++I ++ + G +  A+ +F  M +RNV ++N M+SG ++N  L+EAR+
Sbjct: 27  QRHAAGDVFQSNTAINEHFRAGRVAAARRVFDEMSERNVFTWNCMVSGLIRNRMLAEARK 86

Query: 64  LFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEA 123
           +F+ MP RN VSW A++ G A  GRV EAR+LF  +P+RNVVSWN+MV G  RNG +  A
Sbjct: 87  VFDAMPVRNSVSWAALLTGYARCGRVAEARELFNRIPDRNVVSWNAMVSGYARNGMVKRA 146

Query: 124 RKVFNSMPIKNVISW-------------------------------NAMIAGYVECCMMG 152
           R++F+ MP ++ +SW                               NA+++GYVE   M 
Sbjct: 147 RELFDMMPWRDDVSWLTMISGYIKRKHVREARELFDSMPSPPTSVCNALLSGYVELGYMR 206

Query: 153 EAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGF 212
            A VLF +M+ RN V+W  MI+GY RAG +     LF  MP K+V+S TA++ G+  NG 
Sbjct: 207 AAEVLFGQMQTRNPVSWNVMITGYARAGSMGIAQRLFDEMPEKDVLSRTAIMRGYLQNGS 266

Query: 213 HKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSM 272
              +  +F +M        + +  + N+M++G++R  RL++A  LF  +P RD+ISW ++
Sbjct: 267 VDAAWKVFKDMP-------HRDTVAWNTMMDGFVRNDRLDDALKLFSEMPDRDQISWHAI 319

Query: 273 IDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLN 332
           + GY+  G + +A   F   P++DA++W  +ISG         A  L  EM   G+ P  
Sbjct: 320 LQGYVQQGDMDSANVWFPRAPNKDAISWNTLISGYKDE----GALSLLSEMIRGGLKPDQ 375

Query: 333 ATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSN 392
           AT SV+     +  ++  G+ +H   +KT  E D ++ + LISMY+KCG+I  A  +F  
Sbjct: 376 ATLSVVISICASLVSLGCGKMVHLWAIKTGFEHDALVMSSLISMYSKCGLISEASQVFEL 435

Query: 393 MVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRG 452
           ++ RD V+WN+M+  +++HGLA+E LKVF+ M ++G  P+  TFL ILSAC+H G +  G
Sbjct: 436 ILQRDTVTWNAMIATYAYHGLADEALKVFDMMTKAGFRPDHATFLSILSACAHKGYLYEG 495

Query: 453 WELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRI--WGALLGA 510
              F +M + + + P  +HY  M++LLGR+G I +A +F  R+P   DHR   W  L  A
Sbjct: 496 CYHFRSMQEDWNLVPRSDHYSCMVDLLGRSGFIHQAYDFTRRIP--SDHRTTAWETLFSA 553

Query: 511 CGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKV 570
           C    G  ++ E  A+ +L+  P +   + +L NIYAA         +R  M  +G++K 
Sbjct: 554 CN-SHGEIQLGEIIARNVLKARPSDGGMYTLLSNIYAAKEMWSSAASVRGFMKERGLKKE 612

Query: 571 PGCSWLMRNGGIQMFLSGD 589
            GCSW+   G +  F S D
Sbjct: 613 TGCSWIELKGEVVTFSSND 631


>gi|116310106|emb|CAH67125.1| H0315E07.3 [Oryza sativa Indica Group]
 gi|222628896|gb|EEE61028.1| hypothetical protein OsJ_14863 [Oryza sativa Japonica Group]
          Length = 655

 Score =  405 bits (1041), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 224/619 (36%), Positives = 349/619 (56%), Gaps = 47/619 (7%)

Query: 4   RNHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARR 63
           + H    V    ++I ++ + G +  A+ +F  M +RNV ++N M+SG ++N  L+EAR+
Sbjct: 27  QRHAAGDVFQSNTAINEHFRAGRVAAARRVFDEMSERNVFTWNCMVSGLIRNRMLAEARK 86

Query: 64  LFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEA 123
           +F+ MP RN VSW A++ G A  GRV EAR+LF  +P+RNVVSWN+MV G  RNG +  A
Sbjct: 87  VFDAMPVRNSVSWAALLTGYARCGRVAEARELFNRIPDRNVVSWNAMVSGYARNGMVKRA 146

Query: 124 RKVFNSMPIKNVISW-------------------------------NAMIAGYVECCMMG 152
           R++F+ MP ++ +SW                               NA+++GYVE   M 
Sbjct: 147 RELFDMMPWRDDVSWLTMISGYIKRKHVREARELFDSMPSPPTSVCNALLSGYVELGYMR 206

Query: 153 EAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGF 212
            A VLF +M+ RN V+W  MI+GY RAG +     LF  MP K+V+S TA++ G+  NG 
Sbjct: 207 AAEVLFGQMQTRNPVSWNVMITGYARAGSMGIAQRLFDEMPEKDVLSRTAIMRGYLQNGS 266

Query: 213 HKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSM 272
              +  +F +M        + +  + N+M++G++R  RL++A  LF  +P RD+ISW ++
Sbjct: 267 VDAAWKVFKDMP-------HRDTVAWNTMMDGFVRNDRLDDALKLFSEMPDRDQISWNAI 319

Query: 273 IDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLN 332
           + GY+  G + +A   F   P++DA++W  +ISG         A  L  EM   G+ P  
Sbjct: 320 LQGYVQQGDMDSANAWFRRAPNKDAISWNTLISGYKDE----GALSLLSEMIRGGLKPDQ 375

Query: 333 ATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSN 392
           AT SV+     +  ++  G+ +H   +KT  E D ++ + LISMY+KCG+I  A  +F  
Sbjct: 376 ATLSVVISICASLVSLGCGKMVHLWAIKTGFEHDALVMSSLISMYSKCGLISEASQVFEL 435

Query: 393 MVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRG 452
           ++ RD V+WN+M+  +++HGLA+E LKVF+ M ++G  P+  TFL ILSAC+H G +  G
Sbjct: 436 ILQRDTVTWNAMIATYAYHGLADEALKVFDMMTKAGFRPDHATFLSILSACAHKGYLYEG 495

Query: 453 WELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRI--WGALLGA 510
              F +M + + + P  +HY  M++LLGR+G I +A +F  R+P   DHR   W  L   
Sbjct: 496 CYHFRSMQEDWNLVPRSDHYSCMVDLLGRSGFIHQAYDFTRRIP--SDHRTTAWETLFSV 553

Query: 511 CGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKV 570
           C    G  ++ E  A+ +L+  P +   + +L NIYAA         +R  M  +G++K 
Sbjct: 554 CN-SHGEIQLGEIIARNVLKARPSDGGMYTLLSNIYAAKEMWSSAASVRGFMKERGLKKE 612

Query: 571 PGCSWLMRNGGIQMFLSGD 589
            GCSW+   G +  F S D
Sbjct: 613 TGCSWIELKGEVVTFSSND 631


>gi|297734691|emb|CBI16742.3| unnamed protein product [Vitis vinifera]
          Length = 674

 Score =  405 bits (1041), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 221/593 (37%), Positives = 344/593 (58%), Gaps = 43/593 (7%)

Query: 7   PKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFE 66
           P    V  T+ IT Y K   + +A+ LFQ MP R +V+ +AM+ G+ + G +  A+++F+
Sbjct: 96  PHHDNVSYTAMITAYLKNNELRKAEKLFQTMPDRTIVAESAMIDGYAKAGLMDSAQKVFD 155

Query: 67  EMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKV 126
            M + NV SWT++I G    G+V +A +LF++MP +NVVSW +MV+G  RNG +++AR V
Sbjct: 156 AMIDTNVFSWTSLISGYFRDGQVAKACQLFDQMPAKNVVSWTTMVLGYARNGLIDQARSV 215

Query: 127 FNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGY 186
           FN MP KN ISW AM+  YV+     EA+ LF EM +RN+ +W +MISG      V E +
Sbjct: 216 FNQMPEKNTISWTAMMKSYVDNGRTDEALKLFHEMPQRNLYSWNTMISGCLDGKRVNEAF 275

Query: 187 CLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYI 246
            LF  MP +N VSWT M+ G A NGF K +   F +M        N ++ + N+MI  Y+
Sbjct: 276 KLFHLMPLRNAVSWTIMVSGLARNGFTKLAREYFDQMP-------NKDIAAWNAMITAYV 328

Query: 247 RFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISG 306
               + EA  LF+ +  R+ ++W +MIDGY              + PD +A+        
Sbjct: 329 DECLIVEASELFNLMTERNIVTWNAMIDGYA------------RHRPDGEAM-------- 368

Query: 307 LVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESD 366
                      +L + +R+  + P   T +++  +      +    Q H + +    E +
Sbjct: 369 ----------KHLILMLRS-CIRPNETTMTIILTSCWGMLEL---MQAHALAIVVGCECE 414

Query: 367 LILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLE 426
             L N LI+MY++ G I ++   F ++ ++D+VSW +M++ F++HG  +  L VF  ML+
Sbjct: 415 TSLSNALITMYSRIGDISSSRIAFESLKAKDVVSWTAMLLAFTYHGHGDHALHVFGHMLK 474

Query: 427 SGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIK 486
           SGT P+ +TF+G+LSACSHAGLV +G +LF++M   Y ++P  EHY  ++++LGRAG++ 
Sbjct: 475 SGTKPDEITFVGVLSACSHAGLVKKGQKLFDSMSRAYGLEPRAEHYSCLVDILGRAGQVH 534

Query: 487 EAEEFVLRLP-FEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNI 545
           EA + V ++P  E D  + GALLGAC    GN E+A++  ++L+EL P ++  +V+L N+
Sbjct: 535 EAMDVVWKMPECERDGAVLGALLGACRL-HGNVEMADYIGQKLIELQPNSSGGYVLLANV 593

Query: 546 YAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
           +AA G   E  ++R  M  + VRKVPG S +   G    F +GDK   QV EI
Sbjct: 594 FAARGNWDEFAEVRKKMKDRNVRKVPGFSQIEVKGKCHAFFAGDKSHPQVEEI 646



 Score =  148 bits (374), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 116/438 (26%), Positives = 199/438 (45%), Gaps = 68/438 (15%)

Query: 132 IKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRR 191
           + ++ + N  I+    C  +  A  LF+EM   + V++T+MI+ Y +  E+ +   LF+ 
Sbjct: 66  VLDIYNCNIKISQLGRCGNVRGARKLFDEMPHHDNVSYTAMITAYLKNNELRKAEKLFQT 125

Query: 192 MPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRL 251
           MP + +V+ +AMI G+A  G    +  +F  M        + NV S  S+I+GY R G++
Sbjct: 126 MPDRTIVAESAMIDGYAKAGLMDSAQKVFDAMI-------DTNVFSWTSLISGYFRDGQV 178

Query: 252 EEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNE 311
            +A  LFD +P ++ +SWT+M+ GY   G +  A  +F+ MP+++ ++WTAM+   V N 
Sbjct: 179 AKACQLFDQMPAKNVVSWTTMVLGYARNGLIDQARSVFNQMPEKNTISWTAMMKSYVDNG 238

Query: 312 LFVEATYLFMEMRA--------------------------HGVPPLNA-TFSVLFGAAGA 344
              EA  LF EM                            H +P  NA +++++      
Sbjct: 239 RTDEALKLFHEMPQRNLYSWNTMISGCLDGKRVNEAFKLFHLMPLRNAVSWTIMVSGLAR 298

Query: 345 TANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSM 404
                L R+            D+   N +I+ Y    +I  A  +F+ M  R++V+WN+M
Sbjct: 299 NGFTKLARE----YFDQMPNKDIAAWNAMITAYVDECLIVEASELFNLMTERNIVTWNAM 354

Query: 405 VMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSAC--------SHAGLVSRGWELF 456
           + G++ H    E +K    ML S   PN  T   IL++C        +HA  +  G E  
Sbjct: 355 IDGYARHRPDGEAMKHLILMLRSCIRPNETTMTIILTSCWGMLELMQAHALAIVVGCECE 414

Query: 457 NAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFE----PDHRIWGALLGACG 512
            ++ +            ++I +  R G I  +     R+ FE     D   W A+L A  
Sbjct: 415 TSLSN------------ALITMYSRIGDISSS-----RIAFESLKAKDVVSWTAMLLAFT 457

Query: 513 FCEGNAEIAEHAAKRLLE 530
           +  G+ + A H    +L+
Sbjct: 458 Y-HGHGDHALHVFGHMLK 474


>gi|68611229|emb|CAE03043.3| OSJNBa0084A10.18 [Oryza sativa Japonica Group]
          Length = 729

 Score =  405 bits (1040), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 224/619 (36%), Positives = 349/619 (56%), Gaps = 47/619 (7%)

Query: 4   RNHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARR 63
           + H    V    ++I ++ + G +  A+ +F  M +RNV ++N M+SG ++N  L+EAR+
Sbjct: 27  QRHAAGDVFQSNTAINEHFRAGRVAAARRVFDEMSERNVFTWNCMVSGLIRNRMLAEARK 86

Query: 64  LFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEA 123
           +F+ MP RN VSW A++ G A  GRV EAR+LF  +P+RNVVSWN+MV G  RNG +  A
Sbjct: 87  VFDAMPVRNSVSWAALLTGYARCGRVAEARELFNRIPDRNVVSWNAMVSGYARNGMVKRA 146

Query: 124 RKVFNSMPIKNVISW-------------------------------NAMIAGYVECCMMG 152
           R++F+ MP ++ +SW                               NA+++GYVE   M 
Sbjct: 147 RELFDMMPWRDDVSWLTMISGYIKRKHVREARELFDSMPSPPTSVCNALLSGYVELGYMR 206

Query: 153 EAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGF 212
            A VLF +M+ RN V+W  MI+GY RAG +     LF  MP K+V+S TA++ G+  NG 
Sbjct: 207 AAEVLFGQMQTRNPVSWNVMITGYARAGSMGIAQRLFDEMPEKDVLSRTAIMRGYLQNGS 266

Query: 213 HKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSM 272
              +  +F +M        + +  + N+M++G++R  RL++A  LF  +P RD+ISW ++
Sbjct: 267 VDAAWKVFKDMP-------HRDTVAWNTMMDGFVRNDRLDDALKLFSEMPDRDQISWNAI 319

Query: 273 IDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLN 332
           + GY+  G + +A   F   P++DA++W  +ISG         A  L  EM   G+ P  
Sbjct: 320 LQGYVQQGDMDSANAWFRRAPNKDAISWNTLISGYKDE----GALSLLSEMIRGGLKPDQ 375

Query: 333 ATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSN 392
           AT SV+     +  ++  G+ +H   +KT  E D ++ + LISMY+KCG+I  A  +F  
Sbjct: 376 ATLSVVISICASLVSLGCGKMVHLWAIKTGFEHDALVMSSLISMYSKCGLISEASQVFEL 435

Query: 393 MVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRG 452
           ++ RD V+WN+M+  +++HGLA+E LKVF+ M ++G  P+  TFL ILSAC+H G +  G
Sbjct: 436 ILQRDTVTWNAMIATYAYHGLADEALKVFDMMTKAGFRPDHATFLSILSACAHKGYLYEG 495

Query: 453 WELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRI--WGALLGA 510
              F +M + + + P  +HY  M++LLGR+G I +A +F  R+P   DHR   W  L   
Sbjct: 496 CYHFRSMQEDWNLVPRSDHYSCMVDLLGRSGFIHQAYDFTRRIP--SDHRTTAWETLFSV 553

Query: 511 CGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKV 570
           C    G  ++ E  A+ +L+  P +   + +L NIYAA         +R  M  +G++K 
Sbjct: 554 CN-SHGEIQLGEIIARNVLKARPSDGGMYTLLSNIYAAKEMWSSAASVRGFMKERGLKKE 612

Query: 571 PGCSWLMRNGGIQMFLSGD 589
            GCSW+   G +  F S D
Sbjct: 613 TGCSWIELKGEVVTFSSND 631


>gi|297847764|ref|XP_002891763.1| hypothetical protein ARALYDRAFT_314676 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297337605|gb|EFH68022.1| hypothetical protein ARALYDRAFT_314676 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 828

 Score =  405 bits (1040), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 238/664 (35%), Positives = 366/664 (55%), Gaps = 70/664 (10%)

Query: 3   ERNHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEAR 62
           E     + +    S I+K ++ G + EA+A+F+ M  R++VS+NAM+S + +NG++S+A 
Sbjct: 42  ETTTTSTAIFQCNSQISKLARNGNLQEAEAIFRQMSHRSIVSWNAMISAYAENGKMSKAW 101

Query: 63  RLFEEMP--------------------------------ERNVVSWTAMICGLADAGRVC 90
           ++F+EMP                                E+N VS+  MI G   AGR  
Sbjct: 102 QVFDEMPVRATTSYNAMITAMIKNKCDLGKAYELFCDIPEKNAVSYATMITGFVRAGRFD 161

Query: 91  EARKLFEEMPE--RNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVEC 148
           EA  L+ E P   R+ V+ N ++ G +R G+ NEA +VF  M +K V+S+++M+ GY + 
Sbjct: 162 EAECLYAETPVKFRDPVASNVLLSGYLRVGKWNEAVRVFEGMAVKEVVSYSSMVDGYCKM 221

Query: 149 CMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKN---------VVS 199
             + +A  LF+ M ERNV+TWT+MI GY +AG  E+G+ LF RM ++           V 
Sbjct: 222 GRILDARSLFDRMPERNVITWTAMIDGYFKAGFFEDGFGLFLRMRQEGDVRVNSNTLAVM 281

Query: 200 WTAMIGGFAWN-GFHKESLL--------LFI---------------EMKGICDNGNNCNV 235
           + A    F +  G     LL        LF+               E K +       + 
Sbjct: 282 FRACRDFFRYREGSQIHGLLSRMPLEFDLFLGNSLISMYSKLGYMGEAKAVFGVMKYKDS 341

Query: 236 QSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDR 295
            S NS+I G ++  ++ EA  LF+ +P +D +SWT MI G+   G++S    LF  MP++
Sbjct: 342 VSWNSLITGLVQREQISEAYELFEKMPGKDMVSWTDMIKGFSGKGEISKCVELFGMMPEK 401

Query: 296 DAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIH 355
           D + WTAMIS  V N  + EA   F +M    V P + TFS +  A  + A++  G QIH
Sbjct: 402 DDITWTAMISAFVSNGYYEEALCWFHKMLRKQVCPNSYTFSSVLSATASLADLIEGLQIH 461

Query: 356 CVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLAN 415
             ++K    +DL ++N L+SMY KCG  ++AY IFS +   ++VS+N+M+ GFS++G   
Sbjct: 462 GRVVKMNMANDLSVQNSLVSMYCKCGNTNDAYKIFSCISEPNIVSYNTMISGFSYNGFGK 521

Query: 416 ETLKVFESMLES-GTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVS 474
           E +K+F SMLES G  PN VTFL +LSAC H G V  GW+ F +M   Y I+PGP+HY  
Sbjct: 522 EAVKLF-SMLESTGKEPNGVTFLALLSACVHVGYVDLGWKYFKSMKFSYGIEPGPDHYAC 580

Query: 475 MINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPL 534
           M++L GR+G + EA   +  +P EP   +WG+LL A        ++AE AAK+L+EL+P 
Sbjct: 581 MVDLFGRSGLLDEAYNLISTMPCEPHSGVWGSLLSASK-THLRVDLAELAAKKLIELEPD 639

Query: 535 NAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQ 594
           +A  +VVL  +Y+  G++ +  ++      K ++K PG SW++  G +  FL+GD+    
Sbjct: 640 SATPYVVLSQLYSMVGKNSDCDRIMNIKKSKRIKKDPGSSWIILKGQVHNFLAGDESHLN 699

Query: 595 VAEI 598
           + EI
Sbjct: 700 LEEI 703



 Score = 52.4 bits (124), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 39/141 (27%), Positives = 68/141 (48%), Gaps = 11/141 (7%)

Query: 358 LMKTESESDLILE-NCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANE 416
            ++T + S  I + N  IS  A+ G +  A  IF  M  R +VSWN+M+  ++ +G  ++
Sbjct: 40  FLETTTTSTAIFQCNSQISKLARNGNLQEAEAIFRQMSHRSIVSWNAMISAYAENGKMSK 99

Query: 417 TLKVFESM-LESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSM 475
             +VF+ M + + T  N++    I + C     + + +ELF  + +   +      Y +M
Sbjct: 100 AWQVFDEMPVRATTSYNAMITAMIKNKCD----LGKAYELFCDIPEKNAVS-----YATM 150

Query: 476 INLLGRAGKIKEAEEFVLRLP 496
           I    RAG+  EAE      P
Sbjct: 151 ITGFVRAGRFDEAECLYAETP 171


>gi|15226879|ref|NP_181048.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75099187|sp|O64766.1|PP185_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g35030, mitochondrial; Flags: Precursor
 gi|3033399|gb|AAC12843.1| hypothetical protein [Arabidopsis thaliana]
 gi|209414526|gb|ACI46503.1| At2g35030 [Arabidopsis thaliana]
 gi|330253957|gb|AEC09051.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 627

 Score =  405 bits (1040), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 210/543 (38%), Positives = 327/543 (60%), Gaps = 12/543 (2%)

Query: 56  GRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPER-NVVSWNSMVVGL 114
           G+++EAR+LF+ +PER+VV+WT +I G    G + EAR+LF+ +  R NVV+W +MV G 
Sbjct: 60  GKIAEARKLFDGLPERDVVTWTHVITGYIKLGDMREARELFDRVDSRKNVVTWTAMVSGY 119

Query: 115 IRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMIS 174
           +R+ +L+ A  +F  MP +NV+SWN MI GY +   + +A+ LF+EM ERN+V+W SM+ 
Sbjct: 120 LRSKQLSIAEMLFQEMPERNVVSWNTMIDGYAQSGRIDKALELFDEMPERNIVSWNSMVK 179

Query: 175 GYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCN 234
              + G ++E   LF RMPR++VVSWTAM+ G A NG   E+  LF       D     N
Sbjct: 180 ALVQRGRIDEAMNLFERMPRRDVVSWTAMVDGLAKNGKVDEARRLF-------DCMPERN 232

Query: 235 VQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPD 294
           + S N+MI GY +  R++EA  LF  +P RD  SW +MI G++   +++ A  LF  MP+
Sbjct: 233 IISWNAMITGYAQNNRIDEADQLFQVMPERDFASWNTMITGFIRNREMNKACGLFDRMPE 292

Query: 295 RDAVAWTAMISGLVQNELFVEATYLFMEM-RAHGVPPLNATFSVLFGAAGATANIDLGRQ 353
           ++ ++WT MI+G V+N+   EA  +F +M R   V P   T+  +  A    A +  G+Q
Sbjct: 293 KNVISWTTMITGYVENKENEEALNVFSKMLRDGSVKPNVGTYVSILSACSDLAGLVEGQQ 352

Query: 354 IHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSN--MVSRDLVSWNSMVMGFSHH 411
           IH ++ K+  + + I+ + L++MY+K G +  A  +F N  +  RDL+SWNSM+  ++HH
Sbjct: 353 IHQLISKSVHQKNEIVTSALLNMYSKSGELIAARKMFDNGLVCQRDLISWNSMIAVYAHH 412

Query: 412 GLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEH 471
           G   E ++++  M + G  P++VT+L +L ACSHAGLV +G E F  +     +    EH
Sbjct: 413 GHGKEAIEMYNQMRKHGFKPSAVTYLNLLFACSHAGLVEKGMEFFKDLVRDESLPLREEH 472

Query: 472 YVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLEL 531
           Y  +++L GRAG++K+   F+           +GA+L AC        IA+   K++LE 
Sbjct: 473 YTCLVDLCGRAGRLKDVTNFINCDDARLSRSFYGAILSACN-VHNEVSIAKEVVKKVLET 531

Query: 532 DPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKI 591
              +A  +V++ NIYAA+G+  E  ++RM M  KG++K PGCSW+       +F+ GDK 
Sbjct: 532 GSDDAGTYVLMSNIYAANGKREEAAEMRMKMKEKGLKKQPGCSWVKVGKQNHLFVVGDKS 591

Query: 592 PAQ 594
             Q
Sbjct: 592 HPQ 594



 Score =  258 bits (659), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 164/503 (32%), Positives = 263/503 (52%), Gaps = 51/503 (10%)

Query: 3   ERNHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEAR 62
           +R   +  VV  T+ ++ Y +   +  A+ LFQ MP+RNVVS+N M+ G+ Q+GR+ +A 
Sbjct: 101 DRVDSRKNVVTWTAMVSGYLRSKQLSIAEMLFQEMPERNVVSWNTMIDGYAQSGRIDKAL 160

Query: 63  RLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNE 122
            LF+EMPERN+VSW +M+  L   GR+ EA  LFE MP R+VVSW +MV GL +NG+++E
Sbjct: 161 ELFDEMPERNIVSWNSMVKALVQRGRIDEAMNLFERMPRRDVVSWTAMVDGLAKNGKVDE 220

Query: 123 ARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEV 182
           AR++F+ MP +N+ISWNAMI GY +   + EA  LF+ M ER+  +W +MI+G+ R  E+
Sbjct: 221 ARRLFDCMPERNIISWNAMITGYAQNNRIDEADQLFQVMPERDFASWNTMITGFIRNREM 280

Query: 183 EEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMI 242
            +   LF RMP KNV+SWT MI G+  N  ++E+L +F +M  + D     NV +  S++
Sbjct: 281 NKACGLFDRMPEKNVISWTTMITGYVENKENEEALNVFSKM--LRDGSVKPNVGTYVSIL 338

Query: 243 NGYIRFGRLEEAQNLFD----TVPVRDEISWTSMIDGYLSVGQVSNAYYLFHN--MPDRD 296
           +       L E Q +      +V  ++EI  +++++ Y   G++  A  +F N  +  RD
Sbjct: 339 SACSDLAGLVEGQQIHQLISKSVHQKNEIVTSALLNMYSKSGELIAARKMFDNGLVCQRD 398

Query: 297 AVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHC 356
            ++W +MI+    +    EA  ++ +MR HG  P   T+  L  A      ++ G +   
Sbjct: 399 LISWNSMIAVYAHHGHGKEAIEMYNQMRKHGFKPSAVTYLNLLFACSHAGLVEKGMEFFK 458

Query: 357 VLMKTESESDLILE----NCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHG 412
            L++ ES   L L      CL+ +  + G + +  N          ++ +   +  S +G
Sbjct: 459 DLVRDES---LPLREEHYTCLVDLCGRAGRLKDVTN---------FINCDDARLSRSFYG 506

Query: 413 LANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHY 472
                                     ILSAC+    VS   E+   + +      G   Y
Sbjct: 507 -------------------------AILSACNVHNEVSIAKEVVKKVLETGSDDAGT--Y 539

Query: 473 VSMINLLGRAGKIKEAEEFVLRL 495
           V M N+    GK +EA E  +++
Sbjct: 540 VLMSNIYAANGKREEAAEMRMKM 562



 Score =  211 bits (538), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 121/339 (35%), Positives = 183/339 (53%), Gaps = 49/339 (14%)

Query: 114 LIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEER-NVVTWTSM 172
           L + G++ EARK+F+ +P ++V++W  +I GY++   M EA  LF+ ++ R NVVTWT+M
Sbjct: 56  LCKVGKIAEARKLFDGLPERDVVTWTHVITGYIKLGDMREARELFDRVDSRKNVVTWTAM 115

Query: 173 ISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNN 232
           +SGY R+ ++     LF+ MP +NVVSW  MI G+A +G   ++L LF EM         
Sbjct: 116 VSGYLRSKQLSIAEMLFQEMPERNVVSWNTMIDGYAQSGRIDKALELFDEMP-------E 168

Query: 233 CNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNM 292
            N+ S NSM+   ++ GR++EA NLF+ +P RD +SWT+M+DG    G+V  A  LF  M
Sbjct: 169 RNIVSWNSMVKALVQRGRIDEAMNLFERMPRRDVVSWTAMVDGLAKNGKVDEARRLFDCM 228

Query: 293 PDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGR 352
           P+R+ ++W AMI+G  QN    EA  LF  M                             
Sbjct: 229 PERNIISWNAMITGYAQNNRIDEADQLFQVM----------------------------- 259

Query: 353 QIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHG 412
                      E D    N +I+ + +   ++ A  +F  M  ++++SW +M+ G+  + 
Sbjct: 260 ----------PERDFASWNTMITGFIRNREMNKACGLFDRMPEKNVISWTTMITGYVENK 309

Query: 413 LANETLKVFESMLESGT-HPNSVTFLGILSACSH-AGLV 449
              E L VF  ML  G+  PN  T++ ILSACS  AGLV
Sbjct: 310 ENEEALNVFSKMLRDGSVKPNVGTYVSILSACSDLAGLV 348



 Score =  108 bits (270), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 67/245 (27%), Positives = 121/245 (49%), Gaps = 13/245 (5%)

Query: 216 SLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDG 275
           S+ LF  ++ I  + +   V     +I    + G++ EA+ LFD +P RD ++WT +I G
Sbjct: 27  SVQLFNLVRSIYSSSSRPRVPQPEWLIGELCKVGKIAEARKLFDGLPERDVVTWTHVITG 86

Query: 276 YLSVGQVSNAYYLFHNMPDR-DAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNAT 334
           Y+ +G +  A  LF  +  R + V WTAM+SG ++++    A  LF EM    V     +
Sbjct: 87  YIKLGDMREARELFDRVDSRKNVVTWTAMVSGYLRSKQLSIAEMLFQEMPERNV----VS 142

Query: 335 FSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMV 394
           ++ +      +  ID   +    L     E +++  N ++    + G ID A N+F  M 
Sbjct: 143 WNTMIDGYAQSGRIDKALE----LFDEMPERNIVSWNSMVKALVQRGRIDEAMNLFERMP 198

Query: 395 SRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWE 454
            RD+VSW +MV G + +G  +E  ++F+ M E     N +++  +++  +    +    +
Sbjct: 199 RRDVVSWTAMVDGLAKNGKVDEARRLFDCMPER----NIISWNAMITGYAQNNRIDEADQ 254

Query: 455 LFNAM 459
           LF  M
Sbjct: 255 LFQVM 259


>gi|297826975|ref|XP_002881370.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297327209|gb|EFH57629.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 627

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 210/543 (38%), Positives = 324/543 (59%), Gaps = 12/543 (2%)

Query: 56  GRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPER-NVVSWNSMVVGL 114
           G+L+EAR+LF+ +PER+VV+WT +I G    G + EAR+LF+ +  R NVV+W +MV G 
Sbjct: 60  GKLAEARKLFDGLPERDVVTWTDVITGYIKLGNMREARELFDRVDSRKNVVTWTAMVSGY 119

Query: 115 IRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMIS 174
           +R+ +L+ A  +F  MP +N++SWN MI GY +   + +A+ LF+EM ERN V+W +MI 
Sbjct: 120 LRSKQLSVAETLFQEMPERNIVSWNTMIDGYAQSGRIDKALELFDEMPERNTVSWNTMIK 179

Query: 175 GYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCN 234
              + G ++E   LF RMP K+V+SWTAM+ G A NG   E+  LF       D     N
Sbjct: 180 ALVQRGRIDEAMNLFERMPIKDVISWTAMVDGLAKNGKVDEARRLF-------DCMPERN 232

Query: 235 VQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPD 294
           + S N+MI GY    R++EA  LF  +P RD  SW +MI G++   +++ A  LF  MP 
Sbjct: 233 IISWNAMITGYTYNNRIDEADQLFQVMPERDFASWNTMITGFIRNREINRACGLFDRMPQ 292

Query: 295 RDAVAWTAMISGLVQNELFVEATYLFMEMRAHG-VPPLNATFSVLFGAAGATANIDLGRQ 353
           ++ ++WTAMI+G V+N+   EA  +F +M   G V P   T+  +  A    A +  G+Q
Sbjct: 293 KNVISWTAMITGYVENKENEEALKVFSKMLRDGCVKPNVGTYVSILSACSDLAGLVEGQQ 352

Query: 354 IHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSN--MVSRDLVSWNSMVMGFSHH 411
           IH ++ K+  + + ++ + LI+MY+K G +  A  +F N  +  RDL+SWNSM+  ++HH
Sbjct: 353 IHQLISKSVHQENEVVTSALINMYSKSGELIAARKMFDNGLVCQRDLISWNSMIAVYAHH 412

Query: 412 GLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEH 471
           G   E +++++ M + G  P+ VT+L +L ACSHAGLV +G E F  +     +    EH
Sbjct: 413 GHGKEAIEMYDQMRKHGFKPSEVTYLNLLFACSHAGLVEKGMEFFKELVRDESLPLREEH 472

Query: 472 YVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLEL 531
           Y  +++L GRAG++K+   F+           +GA+L AC        IA+   K++LE 
Sbjct: 473 YTCLVDLCGRAGRLKDVLNFINCDDARLSRSFYGAILSACN-VHSEVSIAKEVVKKVLET 531

Query: 532 DPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKI 591
              +A  +V++ NIYAASG+  +  ++RM M  KG++K PGCSW+       +F+ GDK 
Sbjct: 532 GSDDAGTYVMMSNIYAASGKREKAAEMRMKMKEKGLKKQPGCSWVKIGNQTHLFVVGDKS 591

Query: 592 PAQ 594
             Q
Sbjct: 592 HPQ 594



 Score =  255 bits (652), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 162/503 (32%), Positives = 261/503 (51%), Gaps = 51/503 (10%)

Query: 3   ERNHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEAR 62
           +R   +  VV  T+ ++ Y +   +  A+ LFQ MP+RN+VS+N M+ G+ Q+GR+ +A 
Sbjct: 101 DRVDSRKNVVTWTAMVSGYLRSKQLSVAETLFQEMPERNIVSWNTMIDGYAQSGRIDKAL 160

Query: 63  RLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNE 122
            LF+EMPERN VSW  MI  L   GR+ EA  LFE MP ++V+SW +MV GL +NG+++E
Sbjct: 161 ELFDEMPERNTVSWNTMIKALVQRGRIDEAMNLFERMPIKDVISWTAMVDGLAKNGKVDE 220

Query: 123 ARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEV 182
           AR++F+ MP +N+ISWNAMI GY     + EA  LF+ M ER+  +W +MI+G+ R  E+
Sbjct: 221 ARRLFDCMPERNIISWNAMITGYTYNNRIDEADQLFQVMPERDFASWNTMITGFIRNREI 280

Query: 183 EEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMI 242
                LF RMP+KNV+SWTAMI G+  N  ++E+L +F +M  + D     NV +  S++
Sbjct: 281 NRACGLFDRMPQKNVISWTAMITGYVENKENEEALKVFSKM--LRDGCVKPNVGTYVSIL 338

Query: 243 NGYIRFGRLEEAQNLFD----TVPVRDEISWTSMIDGYLSVGQVSNAYYLFHN--MPDRD 296
           +       L E Q +      +V   +E+  +++I+ Y   G++  A  +F N  +  RD
Sbjct: 339 SACSDLAGLVEGQQIHQLISKSVHQENEVVTSALINMYSKSGELIAARKMFDNGLVCQRD 398

Query: 297 AVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHC 356
            ++W +MI+    +    EA  ++ +MR HG  P   T+  L  A      ++ G +   
Sbjct: 399 LISWNSMIAVYAHHGHGKEAIEMYDQMRKHGFKPSEVTYLNLLFACSHAGLVEKGMEFFK 458

Query: 357 VLMKTESESDLILE----NCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHG 412
            L++ ES   L L      CL+ +  + G + +  N          ++ +   +  S +G
Sbjct: 459 ELVRDES---LPLREEHYTCLVDLCGRAGRLKDVLN---------FINCDDARLSRSFYG 506

Query: 413 LANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHY 472
                                     ILSAC+    VS   E+   + +      G   Y
Sbjct: 507 -------------------------AILSACNVHSEVSIAKEVVKKVLETGSDDAGT--Y 539

Query: 473 VSMINLLGRAGKIKEAEEFVLRL 495
           V M N+   +GK ++A E  +++
Sbjct: 540 VMMSNIYAASGKREKAAEMRMKM 562



 Score =  214 bits (544), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 153/482 (31%), Positives = 229/482 (47%), Gaps = 88/482 (18%)

Query: 110 MVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEER-NVVT 168
           ++  L + G+L EARK+F+ +P ++V++W  +I GY++   M EA  LF+ ++ R NVVT
Sbjct: 52  LIGKLCKVGKLAEARKLFDGLPERDVVTWTDVITGYIKLGNMREARELFDRVDSRKNVVT 111

Query: 169 WTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICD 228
           WT+M+SGY R+ ++     LF+ MP +N+VSW  MI G+A +G   ++L LF EM     
Sbjct: 112 WTAMVSGYLRSKQLSVAETLFQEMPERNIVSWNTMIDGYAQSGRIDKALELFDEMP---- 167

Query: 229 NGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYL 288
                N  S N+MI   ++ GR++EA NLF+ +P++D ISWT+M+DG    G+V  A  L
Sbjct: 168 ---ERNTVSWNTMIKALVQRGRIDEAMNLFERMPIKDVISWTAMVDGLAKNGKVDEARRL 224

Query: 289 FHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANI 348
           F  MP+R+ ++W AMI+G   N    EA  LF  M                         
Sbjct: 225 FDCMPERNIISWNAMITGYTYNNRIDEADQLFQVM------------------------- 259

Query: 349 DLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGF 408
                          E D    N +I+ + +   I+ A  +F  M  ++++SW +M+ G+
Sbjct: 260 --------------PERDFASWNTMITGFIRNREINRACGLFDRMPQKNVISWTAMITGY 305

Query: 409 SHHGLANETLKVFESMLESG-THPNSVTFLGILSACSH-AGLV----------------- 449
             +    E LKVF  ML  G   PN  T++ ILSACS  AGLV                 
Sbjct: 306 VENKENEEALKVFSKMLRDGCVKPNVGTYVSILSACSDLAGLVEGQQIHQLISKSVHQEN 365

Query: 450 -----------SRGWELFNA--MFDVYKI-QPGPEHYVSMINLLGRAGKIKEAEEFVLRL 495
                      S+  EL  A  MFD   + Q     + SMI +    G  KEA E   ++
Sbjct: 366 EVVTSALINMYSKSGELIAARKMFDNGLVCQRDLISWNSMIAVYAHHGHGKEAIEMYDQM 425

Query: 496 P---FEPDHRIWGALLGAC---GFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAAS 549
               F+P    +  LL AC   G  E   E  +   +   E  PL    +  L ++   +
Sbjct: 426 RKHGFKPSEVTYLNLLFACSHAGLVEKGMEFFKELVRD--ESLPLREEHYTCLVDLCGRA 483

Query: 550 GR 551
           GR
Sbjct: 484 GR 485


>gi|8671867|gb|AAF78430.1|AC018748_9 Contains similarity to glycerine-rich protein from Nicotiana glauca
           gb|AF151215 and contains multiple PPR PF|01535 repeats
           [Arabidopsis thaliana]
          Length = 816

 Score =  404 bits (1037), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 230/665 (34%), Positives = 364/665 (54%), Gaps = 68/665 (10%)

Query: 3   ERNHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEAR 62
           E     + +    S I+K+++ G + EA+A+F+ M  R++VS+ AM+S + +NG++S+A 
Sbjct: 42  ETTTTSTAIFQCNSQISKHARNGNLQEAEAIFRQMSNRSIVSWIAMISAYAENGKMSKAW 101

Query: 63  RLFEEMP--------------------------------ERNVVSWTAMICGLADAGRVC 90
           ++F+EMP                                E+N VS+  MI G   AGR  
Sbjct: 102 QVFDEMPVRVTTSYNAMITAMIKNKCDLGKAYELFCDIPEKNAVSYATMITGFVRAGRFD 161

Query: 91  EARKLFEEMPE--RNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVEC 148
           EA  L+ E P   R+ V+ N ++ G +R G+ NEA +VF  M +K V+S ++M+ GY + 
Sbjct: 162 EAEFLYAETPVKFRDSVASNVLLSGYLRAGKWNEAVRVFQGMAVKEVVSCSSMVHGYCKM 221

Query: 149 CMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTA------ 202
             + +A  LF+ M ERNV+TWT+MI GY +AG  E+G+ LF RM ++  V   +      
Sbjct: 222 GRIVDARSLFDRMTERNVITWTAMIDGYFKAGFFEDGFGLFLRMRQEGDVKVNSNTLAVM 281

Query: 203 --------------MIGGFA------WNGFHKESLLLFI-------EMKGICDNGNNCNV 235
                          I G        ++ F   SL+          E K +     N + 
Sbjct: 282 FKACRDFVRYREGSQIHGLVSRMPLEFDLFLGNSLMSMYSKLGYMGEAKAVFGVMKNKDS 341

Query: 236 QSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDR 295
            S NS+I G ++  ++ EA  LF+ +P +D +SWT MI G+   G++S    LF  MP++
Sbjct: 342 VSWNSLITGLVQRKQISEAYELFEKMPGKDMVSWTDMIKGFSGKGEISKCVELFGMMPEK 401

Query: 296 DAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIH 355
           D + WTAMIS  V N  + EA   F +M    V P + TFS +  A  + A++  G QIH
Sbjct: 402 DNITWTAMISAFVSNGYYEEALCWFHKMLQKEVCPNSYTFSSVLSATASLADLIEGLQIH 461

Query: 356 CVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLAN 415
             ++K    +DL ++N L+SMY KCG  ++AY IFS +   ++VS+N+M+ G+S++G   
Sbjct: 462 GRVVKMNIVNDLSVQNSLVSMYCKCGNTNDAYKIFSCISEPNIVSYNTMISGYSYNGFGK 521

Query: 416 ETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSM 475
           + LK+F  +  SG  PN VTFL +LSAC H G V  GW+ F +M   Y I+PGP+HY  M
Sbjct: 522 KALKLFSMLESSGKEPNGVTFLALLSACVHVGYVDLGWKYFKSMKSSYNIEPGPDHYACM 581

Query: 476 INLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLN 535
           ++LLGR+G + +A   +  +P +P   +WG+LL A        ++AE AAK+L+EL+P +
Sbjct: 582 VDLLGRSGLLDDASNLISTMPCKPHSGVWGSLLSASK-THLRVDLAELAAKKLIELEPDS 640

Query: 536 APAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQV 595
           A  +VVL  +Y+  G++ +  ++      K ++K PG SW++  G +  FL+GD+    +
Sbjct: 641 ATPYVVLSQLYSIIGKNRDCDRIMNIKKSKRIKKDPGSSWIILKGEVHNFLAGDESQLNL 700

Query: 596 AEILL 600
            EI +
Sbjct: 701 EEIAI 705



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 38/143 (26%), Positives = 69/143 (48%), Gaps = 11/143 (7%)

Query: 358 LMKTESESDLILE-NCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANE 416
            ++T + S  I + N  IS +A+ G +  A  IF  M +R +VSW +M+  ++ +G  ++
Sbjct: 40  FLETTTTSTAIFQCNSQISKHARNGNLQEAEAIFRQMSNRSIVSWIAMISAYAENGKMSK 99

Query: 417 TLKVFESM-LESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSM 475
             +VF+ M +   T  N++    I + C     + + +ELF  + +   +      Y +M
Sbjct: 100 AWQVFDEMPVRVTTSYNAMITAMIKNKCD----LGKAYELFCDIPEKNAVS-----YATM 150

Query: 476 INLLGRAGKIKEAEEFVLRLPFE 498
           I    RAG+  EAE      P +
Sbjct: 151 ITGFVRAGRFDEAEFLYAETPVK 173


>gi|334183275|ref|NP_175765.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806499|sp|Q9C8L6.2|PPR80_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g53600, mitochondrial; Flags: Precursor
 gi|332194847|gb|AEE32968.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 717

 Score =  404 bits (1037), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 230/663 (34%), Positives = 363/663 (54%), Gaps = 68/663 (10%)

Query: 3   ERNHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEAR 62
           E     + +    S I+K+++ G + EA+A+F+ M  R++VS+ AM+S + +NG++S+A 
Sbjct: 42  ETTTTSTAIFQCNSQISKHARNGNLQEAEAIFRQMSNRSIVSWIAMISAYAENGKMSKAW 101

Query: 63  RLFEEMP--------------------------------ERNVVSWTAMICGLADAGRVC 90
           ++F+EMP                                E+N VS+  MI G   AGR  
Sbjct: 102 QVFDEMPVRVTTSYNAMITAMIKNKCDLGKAYELFCDIPEKNAVSYATMITGFVRAGRFD 161

Query: 91  EARKLFEEMPE--RNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVEC 148
           EA  L+ E P   R+ V+ N ++ G +R G+ NEA +VF  M +K V+S ++M+ GY + 
Sbjct: 162 EAEFLYAETPVKFRDSVASNVLLSGYLRAGKWNEAVRVFQGMAVKEVVSCSSMVHGYCKM 221

Query: 149 CMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTA------ 202
             + +A  LF+ M ERNV+TWT+MI GY +AG  E+G+ LF RM ++  V   +      
Sbjct: 222 GRIVDARSLFDRMTERNVITWTAMIDGYFKAGFFEDGFGLFLRMRQEGDVKVNSNTLAVM 281

Query: 203 --------------MIGGFA------WNGFHKESLLLFI-------EMKGICDNGNNCNV 235
                          I G        ++ F   SL+          E K +     N + 
Sbjct: 282 FKACRDFVRYREGSQIHGLVSRMPLEFDLFLGNSLMSMYSKLGYMGEAKAVFGVMKNKDS 341

Query: 236 QSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDR 295
            S NS+I G ++  ++ EA  LF+ +P +D +SWT MI G+   G++S    LF  MP++
Sbjct: 342 VSWNSLITGLVQRKQISEAYELFEKMPGKDMVSWTDMIKGFSGKGEISKCVELFGMMPEK 401

Query: 296 DAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIH 355
           D + WTAMIS  V N  + EA   F +M    V P + TFS +  A  + A++  G QIH
Sbjct: 402 DNITWTAMISAFVSNGYYEEALCWFHKMLQKEVCPNSYTFSSVLSATASLADLIEGLQIH 461

Query: 356 CVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLAN 415
             ++K    +DL ++N L+SMY KCG  ++AY IFS +   ++VS+N+M+ G+S++G   
Sbjct: 462 GRVVKMNIVNDLSVQNSLVSMYCKCGNTNDAYKIFSCISEPNIVSYNTMISGYSYNGFGK 521

Query: 416 ETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSM 475
           + LK+F  +  SG  PN VTFL +LSAC H G V  GW+ F +M   Y I+PGP+HY  M
Sbjct: 522 KALKLFSMLESSGKEPNGVTFLALLSACVHVGYVDLGWKYFKSMKSSYNIEPGPDHYACM 581

Query: 476 INLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLN 535
           ++LLGR+G + +A   +  +P +P   +WG+LL A        ++AE AAK+L+EL+P +
Sbjct: 582 VDLLGRSGLLDDASNLISTMPCKPHSGVWGSLLSASK-THLRVDLAELAAKKLIELEPDS 640

Query: 536 APAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQV 595
           A  +VVL  +Y+  G++ +  ++      K ++K PG SW++  G +  FL+GD+    +
Sbjct: 641 ATPYVVLSQLYSIIGKNRDCDRIMNIKKSKRIKKDPGSSWIILKGEVHNFLAGDESQLNL 700

Query: 596 AEI 598
            EI
Sbjct: 701 EEI 703



 Score = 49.3 bits (116), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 38/143 (26%), Positives = 69/143 (48%), Gaps = 11/143 (7%)

Query: 358 LMKTESESDLILE-NCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANE 416
            ++T + S  I + N  IS +A+ G +  A  IF  M +R +VSW +M+  ++ +G  ++
Sbjct: 40  FLETTTTSTAIFQCNSQISKHARNGNLQEAEAIFRQMSNRSIVSWIAMISAYAENGKMSK 99

Query: 417 TLKVFESM-LESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSM 475
             +VF+ M +   T  N++    I + C     + + +ELF  + +   +      Y +M
Sbjct: 100 AWQVFDEMPVRVTTSYNAMITAMIKNKCD----LGKAYELFCDIPEKNAVS-----YATM 150

Query: 476 INLLGRAGKIKEAEEFVLRLPFE 498
           I    RAG+  EAE      P +
Sbjct: 151 ITGFVRAGRFDEAEFLYAETPVK 173


>gi|12324033|gb|AAG51982.1|AC024260_20 hypothetical protein; 70922-66390 [Arabidopsis thaliana]
          Length = 839

 Score =  404 bits (1037), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 230/665 (34%), Positives = 364/665 (54%), Gaps = 68/665 (10%)

Query: 3   ERNHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEAR 62
           E     + +    S I+K+++ G + EA+A+F+ M  R++VS+ AM+S + +NG++S+A 
Sbjct: 42  ETTTTSTAIFQCNSQISKHARNGNLQEAEAIFRQMSNRSIVSWIAMISAYAENGKMSKAW 101

Query: 63  RLFEEMP--------------------------------ERNVVSWTAMICGLADAGRVC 90
           ++F+EMP                                E+N VS+  MI G   AGR  
Sbjct: 102 QVFDEMPVRVTTSYNAMITAMIKNKCDLGKAYELFCDIPEKNAVSYATMITGFVRAGRFD 161

Query: 91  EARKLFEEMPE--RNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVEC 148
           EA  L+ E P   R+ V+ N ++ G +R G+ NEA +VF  M +K V+S ++M+ GY + 
Sbjct: 162 EAEFLYAETPVKFRDSVASNVLLSGYLRAGKWNEAVRVFQGMAVKEVVSCSSMVHGYCKM 221

Query: 149 CMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTA------ 202
             + +A  LF+ M ERNV+TWT+MI GY +AG  E+G+ LF RM ++  V   +      
Sbjct: 222 GRIVDARSLFDRMTERNVITWTAMIDGYFKAGFFEDGFGLFLRMRQEGDVKVNSNTLAVM 281

Query: 203 --------------MIGGFA------WNGFHKESLLLFI-------EMKGICDNGNNCNV 235
                          I G        ++ F   SL+          E K +     N + 
Sbjct: 282 FKACRDFVRYREGSQIHGLVSRMPLEFDLFLGNSLMSMYSKLGYMGEAKAVFGVMKNKDS 341

Query: 236 QSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDR 295
            S NS+I G ++  ++ EA  LF+ +P +D +SWT MI G+   G++S    LF  MP++
Sbjct: 342 VSWNSLITGLVQRKQISEAYELFEKMPGKDMVSWTDMIKGFSGKGEISKCVELFGMMPEK 401

Query: 296 DAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIH 355
           D + WTAMIS  V N  + EA   F +M    V P + TFS +  A  + A++  G QIH
Sbjct: 402 DNITWTAMISAFVSNGYYEEALCWFHKMLQKEVCPNSYTFSSVLSATASLADLIEGLQIH 461

Query: 356 CVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLAN 415
             ++K    +DL ++N L+SMY KCG  ++AY IFS +   ++VS+N+M+ G+S++G   
Sbjct: 462 GRVVKMNIVNDLSVQNSLVSMYCKCGNTNDAYKIFSCISEPNIVSYNTMISGYSYNGFGK 521

Query: 416 ETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSM 475
           + LK+F  +  SG  PN VTFL +LSAC H G V  GW+ F +M   Y I+PGP+HY  M
Sbjct: 522 KALKLFSMLESSGKEPNGVTFLALLSACVHVGYVDLGWKYFKSMKSSYNIEPGPDHYACM 581

Query: 476 INLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLN 535
           ++LLGR+G + +A   +  +P +P   +WG+LL A        ++AE AAK+L+EL+P +
Sbjct: 582 VDLLGRSGLLDDASNLISTMPCKPHSGVWGSLLSASK-THLRVDLAELAAKKLIELEPDS 640

Query: 536 APAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQV 595
           A  +VVL  +Y+  G++ +  ++      K ++K PG SW++  G +  FL+GD+    +
Sbjct: 641 ATPYVVLSQLYSIIGKNRDCDRIMNIKKSKRIKKDPGSSWIILKGEVHNFLAGDESQLNL 700

Query: 596 AEILL 600
            EI +
Sbjct: 701 EEIAI 705



 Score = 50.1 bits (118), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 38/143 (26%), Positives = 69/143 (48%), Gaps = 11/143 (7%)

Query: 358 LMKTESESDLILE-NCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANE 416
            ++T + S  I + N  IS +A+ G +  A  IF  M +R +VSW +M+  ++ +G  ++
Sbjct: 40  FLETTTTSTAIFQCNSQISKHARNGNLQEAEAIFRQMSNRSIVSWIAMISAYAENGKMSK 99

Query: 417 TLKVFESM-LESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSM 475
             +VF+ M +   T  N++    I + C     + + +ELF  + +   +      Y +M
Sbjct: 100 AWQVFDEMPVRVTTSYNAMITAMIKNKCD----LGKAYELFCDIPEKNAVS-----YATM 150

Query: 476 INLLGRAGKIKEAEEFVLRLPFE 498
           I    RAG+  EAE      P +
Sbjct: 151 ITGFVRAGRFDEAEFLYAETPVK 173


>gi|15220741|ref|NP_176416.1| mitochondrial editing factor 9 [Arabidopsis thaliana]
 gi|75097094|sp|O04590.1|PPR88_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g62260, mitochondrial; Flags: Precursor
 gi|2160154|gb|AAB60776.1| F19K23.18 gene product [Arabidopsis thaliana]
 gi|332195821|gb|AEE33942.1| mitochondrial editing factor 9 [Arabidopsis thaliana]
          Length = 656

 Score =  403 bits (1036), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 221/591 (37%), Positives = 344/591 (58%), Gaps = 34/591 (5%)

Query: 11  VVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGR---LSEARRLFEE 67
            V   + I+ Y KR  +++A+ LF +MP+R+VV++N M+SG++  G    L EAR+LF+E
Sbjct: 71  TVTWNTMISGYVKRREMNQARKLFDVMPKRDVVTWNTMISGYVSCGGIRFLEEARKLFDE 130

Query: 68  MPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVF 127
           MP R+  SW  MI G A   R+ EA  LFE+MPERN VSW++M+ G  +NGE++ A  +F
Sbjct: 131 MPSRDSFSWNTMISGYAKNRRIGEALLLFEKMPERNAVSWSAMITGFCQNGEVDSAVVLF 190

Query: 128 NSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEM------EERNVVTWTSMISGYCRAGE 181
             MP+K+     A++AG ++   + EA  +  +        E  V  + ++I GY + G+
Sbjct: 191 RKMPVKDSSPLCALVAGLIKNERLSEAAWVLGQYGSLVSGREDLVYAYNTLIVGYGQRGQ 250

Query: 182 VEEGYCLFRRMPR---------------KNVVSWTAMIGGFAWNGFHKESLLLFIEMKGI 226
           VE   CLF ++P                KNVVSW +MI  +   G    + LLF +MK  
Sbjct: 251 VEAARCLFDQIPDLCGDDHGGEFRERFCKNVVSWNSMIKAYLKVGDVVSARLLFDQMK-- 308

Query: 227 CDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAY 286
                + +  S N+MI+GY+   R+E+A  LF  +P RD  SW  M+ GY SVG V  A 
Sbjct: 309 -----DRDTISWNTMIDGYVHVSRMEDAFALFSEMPNRDAHSWNMMVSGYASVGNVELAR 363

Query: 287 YLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATA 346
           + F   P++  V+W ++I+   +N+ + EA  LF+ M   G  P   T + L  A+    
Sbjct: 364 HYFEKTPEKHTVSWNSIIAAYEKNKDYKEAVDLFIRMNIEGEKPDPHTLTSLLSASTGLV 423

Query: 347 NIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNM-VSRDLVSWNSMV 405
           N+ LG Q+H +++KT    D+ + N LI+MY++CG I  +  IF  M + R++++WN+M+
Sbjct: 424 NLRLGMQMHQIVVKTVI-PDVPVHNALITMYSRCGEIMESRRIFDEMKLKREVITWNAMI 482

Query: 406 MGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKI 465
            G++ HG A+E L +F SM  +G +P+ +TF+ +L+AC+HAGLV      F +M  VYKI
Sbjct: 483 GGYAFHGNASEALNLFGSMKSNGIYPSHITFVSVLNACAHAGLVDEAKAQFVSMMSVYKI 542

Query: 466 QPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAA 525
           +P  EHY S++N+    G+ +EA   +  +PFEPD  +WGALL AC     N  +A  AA
Sbjct: 543 EPQMEHYSSLVNVTSGQGQFEEAMYIITSMPFEPDKTVWGALLDACRIY-NNVGLAHVAA 601

Query: 526 KRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWL 576
           + +  L+P ++  +V+L N+YA  G   E  ++RM+M  K ++K  G SW+
Sbjct: 602 EAMSRLEPESSTPYVLLYNMYADMGLWDEASQVRMNMESKRIKKERGSSWV 652



 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 121/425 (28%), Positives = 206/425 (48%), Gaps = 28/425 (6%)

Query: 7   PKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFE 66
           P+   V  ++ IT + + G +D A  LF+ MP ++     A+++G ++N RLSEA  +  
Sbjct: 163 PERNAVSWSAMITGFCQNGEVDSAVVLFRKMPVKDSSPLCALVAGLIKNERLSEAAWVLG 222

Query: 67  EM------PERNVVSWTAMICGLADAGRVCEARKLFEEMPE---------------RNVV 105
           +        E  V ++  +I G    G+V  AR LF+++P+               +NVV
Sbjct: 223 QYGSLVSGREDLVYAYNTLIVGYGQRGQVEAARCLFDQIPDLCGDDHGGEFRERFCKNVV 282

Query: 106 SWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERN 165
           SWNSM+   ++ G++  AR +F+ M  ++ ISWN MI GYV    M +A  LF EM  R+
Sbjct: 283 SWNSMIKAYLKVGDVVSARLLFDQMKDRDTISWNTMIDGYVHVSRMEDAFALFSEMPNRD 342

Query: 166 VVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKG 225
             +W  M+SGY   G VE     F + P K+ VSW ++I  +  N  +KE++ LFI M  
Sbjct: 343 AHSWNMMVSGYASVGNVELARHYFEKTPEKHTVSWNSIIAAYEKNKDYKEAVDLFIRMNI 402

Query: 226 ICDNGNNCNVQSCNSMINGYI--RFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVS 283
             +  +   + S  S   G +  R G ++  Q +  TV + D     ++I  Y   G++ 
Sbjct: 403 EGEKPDPHTLTSLLSASTGLVNLRLG-MQMHQIVVKTV-IPDVPVHNALITMYSRCGEIM 460

Query: 284 NAYYLFHNMP-DRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAA 342
            +  +F  M   R+ + W AMI G   +    EA  LF  M+++G+ P + TF  +  A 
Sbjct: 461 ESRRIFDEMKLKREVITWNAMIGGYAFHGNASEALNLFGSMKSNGIYPSHITFVSVLNAC 520

Query: 343 GATANIDLGRQIHCVLMKT-ESESDLILENCLISMYAKCGVIDNAYNIFSNM-VSRDLVS 400
                +D  +     +M   + E  +   + L+++ +  G  + A  I ++M    D   
Sbjct: 521 AHAGLVDEAKAQFVSMMSVYKIEPQMEHYSSLVNVTSGQGQFEEAMYIITSMPFEPDKTV 580

Query: 401 WNSMV 405
           W +++
Sbjct: 581 WGALL 585



 Score = 85.5 bits (210), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 59/208 (28%), Positives = 90/208 (43%), Gaps = 42/208 (20%)

Query: 236 QSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDR 295
           ++ N  +N  IR G + EA+++F+ +  R+ ++W +MI GY+   +++ A  LF  MP R
Sbjct: 41  RATNKELNQMIRSGYIAEARDIFEKLEARNTVTWNTMISGYVKRREMNQARKLFDVMPKR 100

Query: 296 DAVAWTAMISGLVQN---ELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGR 352
           D V W  MISG V         EA  LF EM      P   +FS                
Sbjct: 101 DVVTWNTMISGYVSCGGIRFLEEARKLFDEM------PSRDSFSW--------------- 139

Query: 353 QIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHG 412
                             N +IS YAK   I  A  +F  M  R+ VSW++M+ GF  +G
Sbjct: 140 ------------------NTMISGYAKNRRIGEALLLFEKMPERNAVSWSAMITGFCQNG 181

Query: 413 LANETLKVFESMLESGTHPNSVTFLGIL 440
             +  + +F  M    + P      G++
Sbjct: 182 EVDSAVVLFRKMPVKDSSPLCALVAGLI 209



 Score = 43.9 bits (102), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 36/144 (25%), Positives = 67/144 (46%), Gaps = 14/144 (9%)

Query: 379 KCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLG 438
           + G I  A +IF  + +R+ V+WN+M+ G+      N+  K+F+ M +      +    G
Sbjct: 52  RSGYIAEARDIFEKLEARNTVTWNTMISGYVKRREMNQARKLFDVMPKRDVVTWNTMISG 111

Query: 439 ILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYV--SMINLLGRAGKIKEAEEFVLRLP 496
            +S C     +    +LF+ M       P  + +   +MI+   +  +I EA     ++P
Sbjct: 112 YVS-CGGIRFLEEARKLFDEM-------PSRDSFSWNTMISGYAKNRRIGEALLLFEKMP 163

Query: 497 FEPDHRIWGALLGACGFCEGNAEI 520
            E +   W A++   GFC+ N E+
Sbjct: 164 -ERNAVSWSAMI--TGFCQ-NGEV 183


>gi|357138593|ref|XP_003570875.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Brachypodium distachyon]
          Length = 664

 Score =  402 bits (1033), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 210/587 (35%), Positives = 331/587 (56%), Gaps = 43/587 (7%)

Query: 34  FQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEAR 93
           F  MP+RNV ++N M+SG + N  L++ARR+F+ MP RN VSW A++ G A  GRV EAR
Sbjct: 66  FDEMPERNVFTWNCMISGLVGNRMLADARRVFDAMPVRNPVSWAALLTGYARCGRVAEAR 125

Query: 94  KLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISW--------------- 138
           +LF+ MP+RNVVSWN+M+ G +RNG +  AR++F+ MP +N +SW               
Sbjct: 126 ELFDRMPDRNVVSWNAMMSGYLRNGMVERARELFDMMPSRNDVSWLTMISGYIKKRRLRE 185

Query: 139 ----------------NAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEV 182
                           NA+++GYV    + +A  LF  M+ R+ V+W  MI+GY RAG +
Sbjct: 186 ARELFDLSPSHPTSVCNALLSGYVALSCLKDAEELFGRMQRRDPVSWNVMITGYARAGRM 245

Query: 183 EEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMI 242
           +    LF  MP+K+ +SWTA++ G+  NG    S  +F ++        + +V + N+M+
Sbjct: 246 QVAQSLFDEMPQKDTISWTAVMRGYLQNGDVDASWKVFQDIP-------DRDVVAWNTMM 298

Query: 243 NGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTA 302
            G+++  RL++A  LF  +P RD +SW +++ G++  G ++ A   F  MP++D  +W  
Sbjct: 299 GGFVQSERLDDALRLFAEMPERDLVSWNTILQGHVQQGDMATANTWFRGMPEKDETSWNT 358

Query: 303 MISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTE 362
           +ISG         A  L  EM   G+ P  AT SV+     +   +  G+ +H   +KT 
Sbjct: 359 LISGHKDE----GALALLSEMIRGGLRPDEATLSVVISICASLVALGYGKMVHLYAVKTG 414

Query: 363 SESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFE 422
            E D ++ + LISMY+KCG+I  A  +F  +V RD V+WN+M+  +++HG+A+E LK+F 
Sbjct: 415 FEHDALVMSSLISMYSKCGLIAEASQVFKLLVQRDTVTWNAMIATYAYHGMASEALKLFN 474

Query: 423 SMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRA 482
            M + G  P+  TFL +LSAC+H G +  G   F +M + + + P  +HY  M++LLGR 
Sbjct: 475 KMTKDGFRPDHATFLSVLSACAHKGDLYEGCRYFRSMQEDWNLTPRSDHYSCMVDLLGRL 534

Query: 483 GKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVL 542
           G I +A +F  ++P +     W  L  AC    G+ ++ E  AK +L+  P +   + +L
Sbjct: 535 GFIYQAYDFTRKIPSDLQINAWETLFSACN-AHGDVQLGEVIAKDVLQARPSDGGMYTLL 593

Query: 543 CNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGD 589
            NIYA+         +R  M  +G++K  GCSW+   G +  F S D
Sbjct: 594 ANIYASKEMWSSAASVRGVMKEQGLKKETGCSWVELKGEVVSFSSND 640



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 89/312 (28%), Positives = 151/312 (48%), Gaps = 17/312 (5%)

Query: 7   PKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFE 66
           P+   +  T+ +  Y + G +D +  +FQ +P R+VV++N M+ GF+Q+ RL +A RLF 
Sbjct: 256 PQKDTISWTAVMRGYLQNGDVDASWKVFQDIPDRDVVAWNTMMGGFVQSERLDDALRLFA 315

Query: 67  EMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKV 126
           EMPER++VSW  ++ G    G +  A   F  MPE++  SWN+++ G    G L    ++
Sbjct: 316 EMPERDLVSWNTILQGHVQQGDMATANTWFRGMPEKDETSWNTLISGHKDEGALALLSEM 375

Query: 127 FNS--MPIKNVISWNAMIAGYVECCMMGEAIVLFEEME--ERNVVTWTSMISGYCRAGEV 182
                 P +  +S    I   +     G+ + L+      E + +  +S+IS Y + G +
Sbjct: 376 IRGGLRPDEATLSVVISICASLVALGYGKMVHLYAVKTGFEHDALVMSSLISMYSKCGLI 435

Query: 183 EEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGI---CDNGNNCNVQSC- 238
            E   +F+ + +++ V+W AMI  +A++G   E+L LF +M       D+    +V S  
Sbjct: 436 AEASQVFKLLVQRDTVTWNAMIATYAYHGMASEALKLFNKMTKDGFRPDHATFLSVLSAC 495

Query: 239 ---NSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMP-D 294
                +  G   F  ++E  NL    P  D  S   M+D    +G +  AY     +P D
Sbjct: 496 AHKGDLYEGCRYFRSMQEDWNL---TPRSDHYS--CMVDLLGRLGFIYQAYDFTRKIPSD 550

Query: 295 RDAVAWTAMISG 306
               AW  + S 
Sbjct: 551 LQINAWETLFSA 562



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 60/246 (24%), Positives = 110/246 (44%), Gaps = 27/246 (10%)

Query: 239 NSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAV 298
           N++I  ++R GR+  A+ +FD +P R+  +W  MI G +    +++A  +F  MP R+ V
Sbjct: 47  NAVITAHLRAGRVAAARRVFDEMPERNVFTWNCMISGLVGNRMLADARRVFDAMPVRNPV 106

Query: 299 AWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFS------------VLFGAAGATA 346
           +W A+++G  +     EA  LF  M    V   NA  S             LF    +  
Sbjct: 107 SWAALLTGYARCGRVAEARELFDRMPDRNVVSWNAMMSGYLRNGMVERARELFDMMPSRN 166

Query: 347 NIDLGRQIHCVLMKTE-SESDLILE----------NCLISMYAKCGVIDNAYNIFSNMVS 395
           ++     I   + K    E+  + +          N L+S Y     + +A  +F  M  
Sbjct: 167 DVSWLTMISGYIKKRRLREARELFDLSPSHPTSVCNALLSGYVALSCLKDAEELFGRMQR 226

Query: 396 RDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWEL 455
           RD VSWN M+ G++  G     ++V +S+ +     +++++  ++      G V   W++
Sbjct: 227 RDPVSWNVMITGYARAG----RMQVAQSLFDEMPQKDTISWTAVMRGYLQNGDVDASWKV 282

Query: 456 FNAMFD 461
           F  + D
Sbjct: 283 FQDIPD 288



 Score = 39.7 bits (91), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 32/135 (23%), Positives = 64/135 (47%), Gaps = 9/135 (6%)

Query: 366 DLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESML 425
           D+   N +I+ + + G +  A  +F  M  R++ +WN M+ G   + +  +  +VF++M 
Sbjct: 42  DIFQWNAVITAHLRAGRVAAARRVFDEMPERNVFTWNCMISGLVGNRMLADARRVFDAM- 100

Query: 426 ESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKI 485
                 N V++  +L+  +  G V+   ELF+ M D   +      + +M++   R G +
Sbjct: 101 ---PVRNPVSWAALLTGYARCGRVAEARELFDRMPDRNVVS-----WNAMMSGYLRNGMV 152

Query: 486 KEAEEFVLRLPFEPD 500
           + A E    +P   D
Sbjct: 153 ERARELFDMMPSRND 167


>gi|359480506|ref|XP_003632478.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Vitis vinifera]
          Length = 590

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 211/534 (39%), Positives = 319/534 (59%), Gaps = 16/534 (2%)

Query: 71  RNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSM 130
           ++V ++   I  LA AG +  AR+LF+EMP R+ VSWNS++ G  +NG  +E++++F  M
Sbjct: 45  QDVYAFNVQIGNLARAGNIGAARQLFDEMPHRDTVSWNSIITGYWKNGCFDESKRLFGLM 104

Query: 131 PIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFR 190
           P KNV+SWN+MIAG +E   + EA   F+ M +RN  +W +MISG  R   VEE   LF 
Sbjct: 105 PTKNVVSWNSMIAGCIEDERIDEAWQYFQAMPQRNTASWNAMISGLVRYDRVEEASRLFE 164

Query: 191 RMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNC----NVQSCNSMINGYI 246
            MPR+NV+S+TAM+ G+A  G  +++  LF           NC    NV S   MI+GY+
Sbjct: 165 EMPRRNVISYTAMVDGYAKIGEIEQARALF-----------NCMPQKNVVSWTVMISGYV 213

Query: 247 RFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISG 306
             G+ +EA+NLF+ +P ++ ++ T+MI GY   G+   A  LF  +P RD  +W AMI+G
Sbjct: 214 ENGKFDEAENLFEQMPDKNIVAMTAMITGYCKEGKTDKAKILFDQIPCRDLASWNAMITG 273

Query: 307 LVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESD 366
             QN    EA  L  +M   G+ P ++T   +  A  + A++  GR+ H +++K+  ES 
Sbjct: 274 YAQNGSGEEALKLHSQMLKMGMQPDHSTLISVLTACSSLASLQEGRKTHVLVLKSGYESR 333

Query: 367 LILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLE 426
           + + N LI+MY KCG I ++   F  +   D+VSWN+M+  F+ HG  +  L  F  M  
Sbjct: 334 ISICNALITMYCKCGSILDSELAFRQIDHPDVVSWNAMIAAFARHGFYDRALASFGEMRS 393

Query: 427 SGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIK 486
           +   P+ +TFL +LSAC HAG V      FN+M + YKI P PEH+  ++++L R G+++
Sbjct: 394 NRVEPDGITFLSLLSACGHAGKVHESLNWFNSMIESYKIVPRPEHFACLVDILSRGGQVE 453

Query: 487 EAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIY 546
           +A + +  +PFE D  IWGALL AC     N ++ E AAK+++EL+P N+ A+VVL NIY
Sbjct: 454 KAYKIIQEMPFEADCGIWGALLAAC-HVHLNVKLGELAAKKIVELEPQNSGAYVVLSNIY 512

Query: 547 AASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEILL 600
           AA+G   E  ++R  M  +GV+K P  SW+  +  +  FL  D    ++  I L
Sbjct: 513 AAAGMWGEVTRVRGLMREQGVKKQPAYSWMEIDNKVHFFLGDDASHPEIHRIRL 566



 Score =  246 bits (628), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 147/398 (36%), Positives = 221/398 (55%), Gaps = 20/398 (5%)

Query: 7   PKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFE 66
           P    V   S IT Y K G  DE+K LF LMP +NVVS+N+M++G +++ R+ EA + F+
Sbjct: 74  PHRDTVSWNSIITGYWKNGCFDESKRLFGLMPTKNVVSWNSMIAGCIEDERIDEAWQYFQ 133

Query: 67  EMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKV 126
            MP+RN  SW AMI GL    RV EA +LFEEMP RNV+S+ +MV G  + GE+ +AR +
Sbjct: 134 AMPQRNTASWNAMISGLVRYDRVEEASRLFEEMPRRNVISYTAMVDGYAKIGEIEQARAL 193

Query: 127 FNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGY 186
           FN MP KNV+SW  MI+GYVE     EA  LFE+M ++N+V  T+MI+GYC+ G+ ++  
Sbjct: 194 FNCMPQKNVVSWTVMISGYVENGKFDEAENLFEQMPDKNIVAMTAMITGYCKEGKTDKAK 253

Query: 187 CLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQS----CNSMI 242
            LF ++P +++ SW AMI G+A NG  +E+L L  +M  +    ++  + S    C+S+ 
Sbjct: 254 ILFDQIPCRDLASWNAMITGYAQNGSGEEALKLHSQMLKMGMQPDHSTLISVLTACSSLA 313

Query: 243 NGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTA 302
           +  ++ GR      L      R  I   ++I  Y   G + ++   F  +   D V+W A
Sbjct: 314 S--LQEGRKTHVLVLKSGYESRISIC-NALITMYCKCGSILDSELAFRQIDHPDVVSWNA 370

Query: 303 MISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVL--MK 360
           MI+   ++  +  A   F EMR++ V P   TF  L  A G         ++H  L    
Sbjct: 371 MIAAFARHGFYDRALASFGEMRSNRVEPDGITFLSLLSACGHAG------KVHESLNWFN 424

Query: 361 TESESDLILEN-----CLISMYAKCGVIDNAYNIFSNM 393
           +  ES  I+       CL+ + ++ G ++ AY I   M
Sbjct: 425 SMIESYKIVPRPEHFACLVDILSRGGQVEKAYKIIQEM 462



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 56/220 (25%), Positives = 94/220 (42%), Gaps = 18/220 (8%)

Query: 350 LGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFS 409
             RQ H + +K  S  D+   N  I   A+ G I  A  +F  M  RD VSWNS++ G+ 
Sbjct: 30  FNRQFHPLSIKLFSTQDVYAFNVQIGNLARAGNIGAARQLFDEMPHRDTVSWNSIITGYW 89

Query: 410 HHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGP 469
            +G  +E+ ++F  M       N V++  +++ C     +   W+ F AM      Q   
Sbjct: 90  KNGCFDESKRLFGLM----PTKNVVSWNSMIAGCIEDERIDEAWQYFQAM-----PQRNT 140

Query: 470 EHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAE-HAAKRL 528
             + +MI+ L R  +++EA      +P          ++      +G A+I E   A+ L
Sbjct: 141 ASWNAMISGLVRYDRVEEASRLFEEMPRR-------NVISYTAMVDGYAKIGEIEQARAL 193

Query: 529 LELDPL-NAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGV 567
               P  N  +  V+ + Y  +G+  E   L   M  K +
Sbjct: 194 FNCMPQKNVVSWTVMISGYVENGKFDEAENLFEQMPDKNI 233


>gi|326526103|dbj|BAJ93228.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 623

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 214/564 (37%), Positives = 320/564 (56%), Gaps = 12/564 (2%)

Query: 30  AKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRV 89
           A A+F      +V   N  ++     GR+ +ARRLF+  P+R+VVSWTAM+   A  G++
Sbjct: 27  AAAVFSTDAFSHVQDPNRRIAELAAAGRVPDARRLFDRTPDRDVVSWTAMVAAYARQGQL 86

Query: 90  CEARKLFEEMPE--RNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVE 147
            EA  L    P+  RNVV+W +++ G  R   ++EAR +F+ MP +NV+SWN M+  Y  
Sbjct: 87  HEASALLHR-PDARRNVVTWTALLSGYARARRVDEARALFDRMPERNVVSWNTMLEAYAS 145

Query: 148 CCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGF 207
              MG A  LF+ M  R+  +W  +++   R+G ++E   LF RMP +NV+SWT MI G 
Sbjct: 146 AGRMGAACALFDGMPVRDAGSWNILLAALVRSGTMDEARRLFERMPERNVMSWTTMISGL 205

Query: 208 AWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEI 267
           A +G   E+  LF       D     NV S N+MI+GY R  R++EA +LF  +P RD  
Sbjct: 206 ARSGSADEARALF-------DGMPERNVVSWNAMISGYARNLRIDEALDLFMNMPERDVA 258

Query: 268 SWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHG 327
           SW  MI G++    +  A  LF  MP R+ V+WT M++G +Q      A  +F  M   G
Sbjct: 259 SWNIMITGFIQNKDLKKAQELFDEMPKRNVVSWTTMMNGCLQGNESEMALQVFNGMLVDG 318

Query: 328 VPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAY 387
           + P   TF     A    A +  G+Q+H ++ KT  + D  +E+ L+ +YAKCG I  A 
Sbjct: 319 IRPNQVTFLGAVDAGSNLAGLSEGQQVHQMICKTPFQFDNFIESSLMKLYAKCGEIRLAR 378

Query: 388 NIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAG 447
            +F     +D++SWN M+  ++HHG   E + ++E M E+   PN VT++G+LSACSH+G
Sbjct: 379 KVFDLSGEKDVISWNGMIAAYAHHGAGVEAIALYEKMQENRYKPNDVTYVGLLSACSHSG 438

Query: 448 LVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEP-DHRIWGA 506
           LV  G  +F  M     I    EHY  +I+L  RAG++ +A+  +  L  +P    +W A
Sbjct: 439 LVDEGLRIFEYMAKDKSIAVRDEHYSCLIDLCSRAGRLDDAKRLINGLKLKPTSSTVWSA 498

Query: 507 LLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKG 566
           LLG C    GN  I + AA+ LLE +P NA  + +L NIYA++G+  E  K+R +M  +G
Sbjct: 499 LLGGCN-AHGNESIGDLAARNLLEAEPDNAGTYTLLSNIYASAGKWKEAAKIRSEMNDRG 557

Query: 567 VRKVPGCSWLMRNGGIQMFLSGDK 590
           ++K PGCSW+     + +F++ DK
Sbjct: 558 LKKQPGCSWIELANKVHVFVARDK 581



 Score =  236 bits (601), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 149/474 (31%), Positives = 253/474 (53%), Gaps = 14/474 (2%)

Query: 4   RNHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARR 63
           R   +  VV  T+ ++ Y++   +DEA+ALF  MP+RNVVS+N ML  +   GR+  A  
Sbjct: 95  RPDARRNVVTWTALLSGYARARRVDEARALFDRMPERNVVSWNTMLEAYASAGRMGAACA 154

Query: 64  LFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEA 123
           LF+ MP R+  SW  ++  L  +G + EAR+LFE MPERNV+SW +M+ GL R+G  +EA
Sbjct: 155 LFDGMPVRDAGSWNILLAALVRSGTMDEARRLFERMPERNVMSWTTMISGLARSGSADEA 214

Query: 124 RKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVE 183
           R +F+ MP +NV+SWNAMI+GY     + EA+ LF  M ER+V +W  MI+G+ +  +++
Sbjct: 215 RALFDGMPERNVVSWNAMISGYARNLRIDEALDLFMNMPERDVASWNIMITGFIQNKDLK 274

Query: 184 EGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMIN 243
           +   LF  MP++NVVSWT M+ G       + +L +F    G+  +G   N  +    ++
Sbjct: 275 KAQELFDEMPKRNVVSWTTMMNGCLQGNESEMALQVF---NGMLVDGIRPNQVTFLGAVD 331

Query: 244 GYIRFGRLEEAQNLFDTV---PVR-DEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVA 299
                  L E Q +   +   P + D    +S++  Y   G++  A  +F    ++D ++
Sbjct: 332 AGSNLAGLSEGQQVHQMICKTPFQFDNFIESSLMKLYAKCGEIRLARKVFDLSGEKDVIS 391

Query: 300 WTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLM 359
           W  MI+    +   VEA  L+ +M+ +   P + T+  L  A   +  +D G +I   + 
Sbjct: 392 WNGMIAAYAHHGAGVEAIALYEKMQENRYKPNDVTYVGLLSACSHSGLVDEGLRIFEYMA 451

Query: 360 KTESESDLILE-NCLISMYAKCGVIDNAYNIFSNMVSRDLVS--WNSMVMGFSHHGLANE 416
           K +S +      +CLI + ++ G +D+A  + + +  +   S  W++++ G + HG  NE
Sbjct: 452 KDKSIAVRDEHYSCLIDLCSRAGRLDDAKRLINGLKLKPTSSTVWSALLGGCNAHG--NE 509

Query: 417 TLKVFESM-LESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDV-YKIQPG 468
           ++    +  L      N+ T+  + +  + AG      ++ + M D   K QPG
Sbjct: 510 SIGDLAARNLLEAEPDNAGTYTLLSNIYASAGKWKEAAKIRSEMNDRGLKKQPG 563



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 98/391 (25%), Positives = 165/391 (42%), Gaps = 79/391 (20%)

Query: 5   NHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRL 64
           N P+  V      IT + +   + +A+ LF  MP+RNVVS+  M++G LQ      A ++
Sbjct: 251 NMPERDVASWNIMITGFIQNKDLKKAQELFDEMPKRNVVSWTTMMNGCLQGNESEMALQV 310

Query: 65  FEEMPERNVVSWTAMICGLADAGR--------------VCEARKLFEEMPERNVVSWNSM 110
           F  M    +        G  DAG               +C+    F+   E      +S+
Sbjct: 311 FNGMLVDGIRPNQVTFLGAVDAGSNLAGLSEGQQVHQMICKTPFQFDNFIE------SSL 364

Query: 111 VVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEER----NV 166
           +    + GE+  ARKVF+    K+VISWN MIA Y       EAI L+E+M+E     N 
Sbjct: 365 MKLYAKCGEIRLARKVFDLSGEKDVISWNGMIAAYAHHGAGVEAIALYEKMQENRYKPND 424

Query: 167 VTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGI 226
           VT+  ++S    +G V+EG  +F  M +   ++                          +
Sbjct: 425 VTYVGLLSACSHSGLVDEGLRIFEYMAKDKSIA--------------------------V 458

Query: 227 CDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEIS--WTSMI-----DGYLSV 279
            D   +C +  C+       R GRL++A+ L + + ++   S  W++++      G  S+
Sbjct: 459 RDEHYSCLIDLCS-------RAGRLDDAKRLINGLKLKPTSSTVWSALLGGCNAHGNESI 511

Query: 280 GQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLF 339
           G ++ A  L    PD +A  +T + +       + EA  +  EM   G+           
Sbjct: 512 GDLA-ARNLLEAEPD-NAGTYTLLSNIYASAGKWKEAAKIRSEMNDRGLKK--------- 560

Query: 340 GAAGATANIDLGRQIHCVLM--KTESESDLI 368
                 + I+L  ++H  +   K+ SES+LI
Sbjct: 561 --QPGCSWIELANKVHVFVARDKSHSESELI 589


>gi|224137724|ref|XP_002322628.1| predicted protein [Populus trichocarpa]
 gi|222867258|gb|EEF04389.1| predicted protein [Populus trichocarpa]
          Length = 559

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 211/562 (37%), Positives = 335/562 (59%), Gaps = 43/562 (7%)

Query: 37  MPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPE-RNVVSWTAMICGLADAGRVCEARKL 95
           M +R+VV++ A++SG+++ G + +ARRLF+ +   ++VV+WTAM+ G     R+ EA +L
Sbjct: 1   MHERDVVTWTAVISGYIKCGLIVDARRLFDRVDAIKDVVTWTAMLSGYVRLKRIEEAERL 60

Query: 96  FEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAI 155
           FE MP +NVVSWN+M+ G  +N E+++A +VF  M  +N++SWNA+IA  V+C  + EA 
Sbjct: 61  FEVMPVKNVVSWNTMIDGYGKNREVDKAIEVFERMHERNMVSWNAVIAALVQCGRVEEAR 120

Query: 156 VLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKE 215
             F+EM +R+V++WT+M+ G  R+G V+E   +F RMP +NVVSW               
Sbjct: 121 RRFDEMPKRDVISWTTMVMGLARSGRVDEARKVFDRMPERNVVSW--------------- 165

Query: 216 SLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDG 275
                                  N+M+ GY +  RL+EA +LF+ +P R+  SW +MI G
Sbjct: 166 -----------------------NAMVTGYAKNMRLDEAFDLFERMPERNLSSWNTMITG 202

Query: 276 YLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEM-RAHGVPPLNAT 334
           ++  G+++ A  +F+ MP+++ V+WT MI+G VQ      A  +F+EM +  G  P   T
Sbjct: 203 FIQNGELAWARKVFNEMPEKNVVSWTTMITGYVQEGESESALKVFVEMIKDGGARPNEGT 262

Query: 335 FSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMV 394
           F  + GA    A +  G+Q+H ++ K+  +    + + L++MY+KCG +  A  IF ++V
Sbjct: 263 FVNVLGACSDMAGLGEGQQVHLLISKSVYQDRTFVASALLNMYSKCGELSIARKIFDDVV 322

Query: 395 --SRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRG 452
              RDLV WN M+  ++HHG   E +++FE M   G  PN V+++ +LSACSHAGLV  G
Sbjct: 323 ISQRDLVLWNGMIAAYAHHGCGMEAIELFEDMQGLGFKPNDVSYVELLSACSHAGLVDEG 382

Query: 453 WELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACG 512
              F+ +     IQ   +H+  +++L GRAG++KEA +F+ +L  +    IWG LL  C 
Sbjct: 383 LNYFDELGRDNSIQLREDHHACLVDLCGRAGRLKEAYDFIKQLGTKASSSIWGGLLAGCN 442

Query: 513 FCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPG 572
              G+ EI + AAK L + DP NA  +++L NIYA+  +  E  ++R+ M  KG++K PG
Sbjct: 443 -AHGDLEIGQLAAKELEKEDPENAGTYLLLSNIYASGRKWREASRVRLKMKEKGLKKQPG 501

Query: 573 CSWLMRNGGIQMFLSGDKIPAQ 594
           CSW+     + +FL+ DK   Q
Sbjct: 502 CSWIEVGNRVHVFLARDKSHYQ 523



 Score =  251 bits (641), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 152/437 (34%), Positives = 245/437 (56%), Gaps = 15/437 (3%)

Query: 11  VVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPE 70
           VV  T+ ++ Y +   I+EA+ LF++MP +NVVS+N M+ G+ +N  + +A  +FE M E
Sbjct: 38  VVTWTAMLSGYVRLKRIEEAERLFEVMPVKNVVSWNTMIDGYGKNREVDKAIEVFERMHE 97

Query: 71  RNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSM 130
           RN+VSW A+I  L   GRV EAR+ F+EMP+R+V+SW +MV+GL R+G ++EARKVF+ M
Sbjct: 98  RNMVSWNAVIAALVQCGRVEEARRRFDEMPKRDVISWTTMVMGLARSGRVDEARKVFDRM 157

Query: 131 PIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFR 190
           P +NV+SWNAM+ GY +   + EA  LFE M ERN+ +W +MI+G+ + GE+     +F 
Sbjct: 158 PERNVVSWNAMVTGYAKNMRLDEAFDLFERMPERNLSSWNTMITGFIQNGELAWARKVFN 217

Query: 191 RMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGR 250
            MP KNVVSWT MI G+   G  + +L +F+EM  I D G   N  +  +++        
Sbjct: 218 EMPEKNVVSWTTMITGYVQEGESESALKVFVEM--IKDGGARPNEGTFVNVLGACSDMAG 275

Query: 251 LEEAQ--NLFDTVPVRDEISW--TSMIDGYLSVGQVSNAYYLFHN--MPDRDAVAWTAMI 304
           L E Q  +L  +  V  + ++  +++++ Y   G++S A  +F +  +  RD V W  MI
Sbjct: 276 LGEGQQVHLLISKSVYQDRTFVASALLNMYSKCGELSIARKIFDDVVISQRDLVLWNGMI 335

Query: 305 SGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESE 364
           +    +   +EA  LF +M+  G  P + ++  L  A      +D G      L +  S 
Sbjct: 336 AAYAHHGCGMEAIELFEDMQGLGFKPNDVSYVELLSACSHAGLVDEGLNYFDELGRDNSI 395

Query: 365 SDLILEN---CLISMYAKCGVIDNAYNIFSNMVSRDLVS-WNSMVMGFSHHGLANETLKV 420
              + E+   CL+ +  + G +  AY+    + ++   S W  ++ G + HG   E  ++
Sbjct: 396 Q--LREDHHACLVDLCGRAGRLKEAYDFIKQLGTKASSSIWGGLLAGCNAHGDL-EIGQL 452

Query: 421 FESMLESGTHPNSVTFL 437
               LE     N+ T+L
Sbjct: 453 AAKELEKEDPENAGTYL 469


>gi|413935435|gb|AFW69986.1| hypothetical protein ZEAMMB73_442164 [Zea mays]
          Length = 658

 Score =  400 bits (1027), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 214/615 (34%), Positives = 337/615 (54%), Gaps = 44/615 (7%)

Query: 16  SSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVS 75
           S I  + + G +  A+ +F  M +RNV ++N M+SG  +NG L++AR +F+ MP RN VS
Sbjct: 41  SDIMAHFRAGRVGAARRVFDEMRERNVFTWNCMVSGLARNGLLADARGVFDAMPSRNSVS 100

Query: 76  WTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNV 135
           W A++ G A  GRV EAR LF+ MP RNVVSWN+MV G +RNG ++ AR++F++MP ++ 
Sbjct: 101 WAALLTGYARRGRVAEARDLFDRMPHRNVVSWNAMVSGYLRNGMVDRARELFDAMPARDD 160

Query: 136 ISW--------------------------------NAMIAGYVECCMMGEAIVLFEEMEE 163
           +SW                                NA+++GY     + +A  LF  M+ 
Sbjct: 161 VSWLMMVSGYMRRKRFREAREIFDRAPSPPPTSVCNALLSGYAGYGYLKDAEELFGRMQR 220

Query: 164 RNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEM 223
            + V+W +MI+GY RAG ++    LF  MP K+ VSWTA++ G+  NG    +  +F +M
Sbjct: 221 PDRVSWNAMITGYTRAGMMQVARRLFDEMPGKDTVSWTAIVRGYLQNGDVDAAWEVFQDM 280

Query: 224 KGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVS 283
                   + +V + N+M+ G++   RL++A  LF  +P RD +SW +++ GY+  G + 
Sbjct: 281 P-------DRDVLAWNTMMGGFVVSDRLDDALRLFADMPDRDLVSWNTILQGYIQQGDMD 333

Query: 284 NAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAG 343
           +A   F +M ++D  +W  +ISG         A  L  EM   G  P  AT+SV+     
Sbjct: 334 SATTWFRSMLEKDETSWNTVISGYKDE----GALSLLSEMTRGGYRPDQATWSVVISVCA 389

Query: 344 ATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNS 403
           + A +  GR +H   +KT  E D ++ + LISMY+KCG+I  A  +F  +V RD V+WN+
Sbjct: 390 SLAALGCGRMVHICTIKTGFEHDALVMSSLISMYSKCGLITEASQVFDLIVQRDTVTWNA 449

Query: 404 MVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVY 463
           M+  +++HGLA E L +F+ M +    P+  TFL +LSAC+H G +  G   F +M   +
Sbjct: 450 MIATYAYHGLAAEALALFDRMTKDRFSPDHATFLSVLSACAHKGYLYEGCHYFRSMQQDW 509

Query: 464 KIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEH 523
            + P  +HY  M++LLGR+G + +A  F  ++P       W  L  +C    G+ ++ E 
Sbjct: 510 NLVPRSDHYSCMVDLLGRSGFVHQAYNFTRKIPSNLQINAWETLFSSCN-AHGDIQLGEL 568

Query: 524 AAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQ 583
            AK +L+  P +   + +L NIYAA G       +R  M  +G++K  GCSW+   G + 
Sbjct: 569 VAKNVLQSRPSDGGMYTLLSNIYAAKGMWSSAATVRGLMKEQGLKKETGCSWIELKGDVV 628

Query: 584 MFLSGDKIPAQVAEI 598
            F S D     + +I
Sbjct: 629 SFSSNDNAHPLIEQI 643



 Score =  258 bits (660), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 161/519 (31%), Positives = 256/519 (49%), Gaps = 76/519 (14%)

Query: 41  NVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMP 100
           +V  +N+ +    + GR+  ARR+F+EM ERNV +W  M+ GLA  G + +AR +F+ MP
Sbjct: 35  DVGRWNSDIMAHFRAGRVGAARRVFDEMRERNVFTWNCMVSGLARNGLLADARGVFDAMP 94

Query: 101 ERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEE 160
            RN VSW +++ G  R G + EAR +F+ MP +NV+SWNAM++GY+   M+  A  LF+ 
Sbjct: 95  SRNSVSWAALLTGYARRGRVAEARDLFDRMPHRNVVSWNAMVSGYLRNGMVDRARELFDA 154

Query: 161 MEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVS-WTAMIGGFAWNGFHKESLLL 219
           M  R+ V+W  M+SGY R     E   +F R P     S   A++ G+A  G+ K++  L
Sbjct: 155 MPARDDVSWLMMVSGYMRRKRFREAREIFDRAPSPPPTSVCNALLSGYAGYGYLKDAEEL 214

Query: 220 FIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSV 279
           F  M+         +  S N+MI GY R G ++ A+ LFD +P +D +SWT+++ GYL  
Sbjct: 215 FGRMQ-------RPDRVSWNAMITGYTRAGMMQVARRLFDEMPGKDTVSWTAIVRGYLQN 267

Query: 280 GQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLF 339
           G V  A+ +F +MPDRD +AW  M+ G V ++   +A  LF +M                
Sbjct: 268 GDVDAAWEVFQDMPDRDVLAWNTMMGGFVVSDRLDDALRLFADM---------------- 311

Query: 340 GAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLV 399
                                   + DL+  N ++  Y + G +D+A   F +M+ +D  
Sbjct: 312 -----------------------PDRDLVSWNTILQGYIQQGDMDSATTWFRSMLEKDET 348

Query: 400 SWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAM 459
           SWN+++ G+   G     L +   M   G  P+  T+  ++S C+    +  G      M
Sbjct: 349 SWNTVISGYKDEG----ALSLLSEMTRGGYRPDQATWSVVISVCASLAALGCG-----RM 399

Query: 460 FDVYKIQPGPEHYV----SMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCE 515
             +  I+ G EH      S+I++  + G I EA + V  L  + D   W A++       
Sbjct: 400 VHICTIKTGFEHDALVMSSLISMYSKCGLITEASQ-VFDLIVQRDTVTWNAMI------- 451

Query: 516 GNAEIAEH--AAKRLLELDPLN----APAHVVLCNIYAA 548
             A  A H  AA+ L   D +     +P H    ++ +A
Sbjct: 452 --ATYAYHGLAAEALALFDRMTKDRFSPDHATFLSVLSA 488


>gi|147826737|emb|CAN70653.1| hypothetical protein VITISV_010023 [Vitis vinifera]
          Length = 1301

 Score =  399 bits (1026), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 209/534 (39%), Positives = 317/534 (59%), Gaps = 16/534 (2%)

Query: 71  RNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSM 130
           ++V ++   I  LA AG +  AR++F+EMP R+ VSWNS++ G  +NG  +E++++F  M
Sbjct: 45  QDVYAFNVQIGNLARAGNIGAARQVFDEMPHRDTVSWNSIITGYWKNGCFDESKRLFGLM 104

Query: 131 PIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFR 190
           P KNV+SWN+MIAG +E   + EA   F+ M +RN  +W +MISG  R   VEE   LF 
Sbjct: 105 PTKNVVSWNSMIAGCIEDERIDEAWQYFQAMPQRNTASWNAMISGLVRYDRVEEASRLFE 164

Query: 191 RMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNC----NVQSCNSMINGYI 246
            MPR+NV+S+TAM+ G+A  G  +++  LF           NC    NV S   MI+GY+
Sbjct: 165 EMPRRNVISYTAMVDGYAKIGEIEQARALF-----------NCMPQKNVVSWTVMISGYV 213

Query: 247 RFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISG 306
             G+ +EA+NLF+ +P ++ ++ T+MI GY   G+   A  LF  +P RD  +W AMI+G
Sbjct: 214 ENGKFDEAENLFEQMPDKNIVAMTAMITGYCKEGKTDKAKILFDQIPCRDLASWNAMITG 273

Query: 307 LVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESD 366
             QN    EA  L  +M   G+ P ++T   +  A  + A++  GR+ H +++K+  ES 
Sbjct: 274 YAQNGSGEEALKLHSQMLKMGMQPDHSTLISVLTACSSLASLQEGRKTHVLVLKSGYESR 333

Query: 367 LILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLE 426
           + + N LI+MY KCG I ++   F  +   D+VSWN+M+  F+ HG  +  L  F  M  
Sbjct: 334 ISICNALITMYCKCGSILDSELAFRQIDHPDVVSWNAMIAAFARHGFYDRALASFGEMRS 393

Query: 427 SGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIK 486
           +   P+ +TFL +LSAC HAG V      FN+M   YKI   PEH+  ++++L R G+++
Sbjct: 394 NRVEPDGITFLSLLSACGHAGKVHESLNWFNSMIXSYKIVXRPEHFACLVDILSRGGQVE 453

Query: 487 EAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIY 546
           +A + +  +PFE D  IWGALL AC     N ++ E AAK+++EL+P N+ A+VVL NIY
Sbjct: 454 KAYKIIQEMPFEADCGIWGALLAAC-HVHLNVKLGELAAKKIVELEPQNSGAYVVLSNIY 512

Query: 547 AASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEILL 600
           AA+G   E  ++R  M  +GV+K P  SW+  +  +  FL  D    ++  I L
Sbjct: 513 AAAGMWGEVTRVRGLMREQGVKKQPAYSWMEIDNKVHFFLGDDASHPEIHRIRL 566



 Score =  244 bits (624), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 143/398 (35%), Positives = 218/398 (54%), Gaps = 20/398 (5%)

Query: 7   PKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFE 66
           P    V   S IT Y K G  DE+K LF LMP +NVVS+N+M++G +++ R+ EA + F+
Sbjct: 74  PHRDTVSWNSIITGYWKNGCFDESKRLFGLMPTKNVVSWNSMIAGCIEDERIDEAWQYFQ 133

Query: 67  EMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKV 126
            MP+RN  SW AMI GL    RV EA +LFEEMP RNV+S+ +MV G  + GE+ +AR +
Sbjct: 134 AMPQRNTASWNAMISGLVRYDRVEEASRLFEEMPRRNVISYTAMVDGYAKIGEIEQARAL 193

Query: 127 FNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGY 186
           FN MP KNV+SW  MI+GYVE     EA  LFE+M ++N+V  T+MI+GYC+ G+ ++  
Sbjct: 194 FNCMPQKNVVSWTVMISGYVENGKFDEAENLFEQMPDKNIVAMTAMITGYCKEGKTDKAK 253

Query: 187 CLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQS----CNSMI 242
            LF ++P +++ SW AMI G+A NG  +E+L L  +M  +    ++  + S    C+S+ 
Sbjct: 254 ILFDQIPCRDLASWNAMITGYAQNGSGEEALKLHSQMLKMGMQPDHSTLISVLTACSSL- 312

Query: 243 NGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTA 302
              ++ GR      L      R  I   ++I  Y   G + ++   F  +   D V+W A
Sbjct: 313 -ASLQEGRKTHVLVLKSGYESRISIC-NALITMYCKCGSILDSELAFRQIDHPDVVSWNA 370

Query: 303 MISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQ-------IH 355
           MI+   ++  +  A   F EMR++ V P   TF  L  A G    +             +
Sbjct: 371 MIAAFARHGFYDRALASFGEMRSNRVEPDGITFLSLLSACGHAGKVHESLNWFNSMIXSY 430

Query: 356 CVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNM 393
            ++ + E  +      CL+ + ++ G ++ AY I   M
Sbjct: 431 KIVXRPEHFA------CLVDILSRGGQVEKAYKIIQEM 462



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/149 (28%), Positives = 69/149 (46%), Gaps = 13/149 (8%)

Query: 350 LGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFS 409
             RQ H + +K  S  D+   N  I   A+ G I  A  +F  M  RD VSWNS++ G+ 
Sbjct: 30  FNRQFHPLSIKLFSTQDVYAFNVQIGNLARAGNIGAARQVFDEMPHRDTVSWNSIITGYW 89

Query: 410 HHGLANETLKVFESMLESGTHP--NSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQP 467
            +G  +E+ ++F      G  P  N V++  +++ C     +   W+ F AM      Q 
Sbjct: 90  KNGCFDESKRLF------GLMPTKNVVSWNSMIAGCIEDERIDEAWQYFQAM-----PQR 138

Query: 468 GPEHYVSMINLLGRAGKIKEAEEFVLRLP 496
               + +MI+ L R  +++EA      +P
Sbjct: 139 NTASWNAMISGLVRYDRVEEASRLFEEMP 167


>gi|297837203|ref|XP_002886483.1| hypothetical protein ARALYDRAFT_338156 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297332324|gb|EFH62742.1| hypothetical protein ARALYDRAFT_338156 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1243

 Score =  399 bits (1024), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 220/612 (35%), Positives = 344/612 (56%), Gaps = 83/612 (13%)

Query: 46  NAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVV 105
           N  L+  +++G ++EAR +FE++  RN+V+W  MI G      + +ARKLF+EMPER+VV
Sbjct: 388 NKELNQMIRSGYIAEAREIFEKLEARNIVTWNTMISGYVKRREMTQARKLFDEMPERDVV 447

Query: 106 SWNSMVVGLIRNGE---LNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEME 162
           +WN+M+ G +  G    L EARK+F+ MP ++  SWN MI+GY +   + EA++LFE+M 
Sbjct: 448 TWNAMISGYVSCGGIRFLEEARKLFDEMPSRDSFSWNTMISGYAKNRRISEALLLFEKMP 507

Query: 163 ERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGG---------------- 206
           ERN V+W++MI+G+C  GEV   + LFRRMP K+  S  A++ G                
Sbjct: 508 ERNAVSWSAMITGFCHNGEVNRAFDLFRRMPVKDSSSLCALVAGLIKNERLEEAAWVLGQ 567

Query: 207 ------------FAWN---------GFHKESLLLFIEMKGICDNGNNC---------NVQ 236
                       +A+N         G  + +  LF ++  +CD+ ++          NV 
Sbjct: 568 YGSLDSGREDLVYAYNTLIVGYGQRGQVEAARCLFDQIPDLCDDDDHGGAFRERFRRNVV 627

Query: 237 SCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRD 296
           S NSMI  Y++ G +  A+ LFD +  RD ISW +MIDGY+ V ++ +A+ LF  MP+RD
Sbjct: 628 SWNSMIKAYLKVGDVVSARLLFDQMKDRDTISWNTMIDGYVHVSRMDDAFALFSEMPNRD 687

Query: 297 AVAWTAMISGLV-------------------------------QNELFVEATYLFMEMRA 325
           A +W  M+SG                                 +N+ + EA  +F+ M  
Sbjct: 688 AHSWNMMVSGYASVGNLELARHYFEKTPEKNIVSWNSIIAAYDKNKDYKEAVDVFIRMNI 747

Query: 326 HGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDN 385
            G  P   T + L   +    N+ LG Q+H +++KT    D+ + N LI+MY++CG I  
Sbjct: 748 DGEKPDPHTLTSLLSVSTGLVNLRLGMQMHQIVVKTVI-PDVPVHNALITMYSRCGEIME 806

Query: 386 AYNIFSNM-VSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACS 444
           +  IF  M + R++++WN+++ G++ HG A+E L +F SM   G HP+ +TF+ +L+AC+
Sbjct: 807 SRRIFDEMKLKREVITWNAIIGGYAFHGNASEALNLFWSMKCYGIHPSHITFVSVLNACA 866

Query: 445 HAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIW 504
           HAGLV    E F +M  VYKI+P  EHY S++N++   G+ +EA   +  +PFEPD  +W
Sbjct: 867 HAGLVDEAKEQFLSMMSVYKIEPQMEHYSSLVNVISGQGQFEEAMYVIKSMPFEPDKTVW 926

Query: 505 GALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGL 564
           GALL AC     N  +A  AA+ +  L+P ++  +V+L N+YA  G   E  ++RM+M  
Sbjct: 927 GALLDACRI-YNNVGLAHVAAEAMSRLEPESSTPYVLLYNMYADMGLWDEASQVRMNMES 985

Query: 565 KGVRKVPGCSWL 576
           K ++K  G SW+
Sbjct: 986 KRIKKERGSSWV 997



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 60/192 (31%), Positives = 86/192 (44%), Gaps = 42/192 (21%)

Query: 236 QSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDR 295
           ++ N  +N  IR G + EA+ +F+ +  R+ ++W +MI GY+   +++ A  LF  MP+R
Sbjct: 385 RATNKELNQMIRSGYIAEAREIFEKLEARNIVTWNTMISGYVKRREMTQARKLFDEMPER 444

Query: 296 DAVAWTAMISGLVQN---ELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGR 352
           D V W AMISG V         EA  LF EM      P   +FS                
Sbjct: 445 DVVTWNAMISGYVSCGGIRFLEEARKLFDEM------PSRDSFS---------------- 482

Query: 353 QIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHG 412
                             N +IS YAK   I  A  +F  M  R+ VSW++M+ GF H+G
Sbjct: 483 -----------------WNTMISGYAKNRRISEALLLFEKMPERNAVSWSAMITGFCHNG 525

Query: 413 LANETLKVFESM 424
             N    +F  M
Sbjct: 526 EVNRAFDLFRRM 537


>gi|357438957|ref|XP_003589755.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355478803|gb|AES60006.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 891

 Score =  398 bits (1022), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 212/553 (38%), Positives = 328/553 (59%), Gaps = 12/553 (2%)

Query: 46  NAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEM-PERNV 104
           N  +S   + G+++EAR++F+EM +R+   WT MI G    G + EARKLF+    +++V
Sbjct: 49  NYFISKLCREGKVNEARKVFDEMSKRDSCLWTTMISGYIKCGLINEARKLFDRPDAQKSV 108

Query: 105 VSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEER 164
           + W +MV G I+   + EA ++FN MP++NV+SWN MI GY       EA+ LF  M ER
Sbjct: 109 IVWTAMVSGYIKMNRIEEAERLFNEMPVRNVVSWNTMIDGYARNGRTQEALDLFGRMPER 168

Query: 165 NVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMK 224
           NVV+W ++++     G +++   LF  M  ++VVSWT M+ G + NG    +  +F +M 
Sbjct: 169 NVVSWNTVMTALAHCGRIDDAERLFNEMRERDVVSWTTMVAGLSKNGRVDAAREVFDKMP 228

Query: 225 GICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSN 284
                    NV S N+MI GY + GR +EA  LF+ +P RD  SW +M+ G++  G ++ 
Sbjct: 229 IR-------NVVSWNAMIAGYAQNGRFDEALKLFERMPERDMPSWNTMVTGFIQNGDLNR 281

Query: 285 AYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAH-GVPPLNATFSVLFGAAG 343
           A  LFH MP ++ + WTAM++G VQ+ L  EA  LF +M+A+ G+ P   TF  + GA  
Sbjct: 282 AEQLFHAMPQKNVITWTAMMTGYVQHGLSEEALKLFNKMQANDGLKPTTGTFVTVLGACS 341

Query: 344 ATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVS--RDLVSW 401
             A +  G+QIH ++ KT  +    + + LI+MY+KCG    A  +F + +S   DL++W
Sbjct: 342 DLAGLPEGQQIHQMISKTVFQESTYVVSALINMYSKCGDFHVAKKMFDDGLSGHMDLIAW 401

Query: 402 NSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFD 461
           N M+  ++HHG  NE + +F  M E G   N VT++G+L+ACSHAGL   G++ F+ +  
Sbjct: 402 NGMIAAYAHHGYGNEAINLFNKMQELGFQANDVTYVGLLTACSHAGLFDEGFKYFDELLK 461

Query: 462 VYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIA 521
              IQ   +HY  +I+L GRAG++ EA   +  L  E    +WGALL  C    GNA+I 
Sbjct: 462 NRYIQVREDHYTCLIDLCGRAGRLDEALNIIEGLGKEVSLSLWGALLAGCS-VHGNADIG 520

Query: 522 EHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGG 581
           +  A ++L+++P NA  +++  N+YA+ G   E   +RM M  KG++K PGCSW+     
Sbjct: 521 KLVADKVLKMEPENADTYLLASNMYASVGMREEAANVRMKMKKKGLKKQPGCSWIDVGNT 580

Query: 582 IQMFLSGDKIPAQ 594
           +Q+F+  DK  +Q
Sbjct: 581 VQVFVVNDKSHSQ 593



 Score =  251 bits (641), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 150/423 (35%), Positives = 232/423 (54%), Gaps = 14/423 (3%)

Query: 3   ERNHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEAR 62
           +R   +  V+  T+ ++ Y K   I+EA+ LF  MP RNVVS+N M+ G+ +NGR  EA 
Sbjct: 100 DRPDAQKSVIVWTAMVSGYIKMNRIEEAERLFNEMPVRNVVSWNTMIDGYARNGRTQEAL 159

Query: 63  RLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNE 122
            LF  MPERNVVSW  ++  LA  GR+ +A +LF EM ER+VVSW +MV GL +NG ++ 
Sbjct: 160 DLFGRMPERNVVSWNTVMTALAHCGRIDDAERLFNEMRERDVVSWTTMVAGLSKNGRVDA 219

Query: 123 ARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEV 182
           AR+VF+ MPI+NV+SWNAMIAGY +     EA+ LFE M ER++ +W +M++G+ + G++
Sbjct: 220 AREVFDKMPIRNVVSWNAMIAGYAQNGRFDEALKLFERMPERDMPSWNTMVTGFIQNGDL 279

Query: 183 EEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMI 242
                LF  MP+KNV++WTAM+ G+  +G  +E+L LF +M+   ++G      +  +++
Sbjct: 280 NRAEQLFHAMPQKNVITWTAMMTGYVQHGLSEEALKLFNKMQA--NDGLKPTTGTFVTVL 337

Query: 243 NGYIRFGRLEEAQNLFDTV--PVRDEISW--TSMIDGYLSVGQVSNAYYLFHN--MPDRD 296
                   L E Q +   +   V  E ++  +++I+ Y   G    A  +F +      D
Sbjct: 338 GACSDLAGLPEGQQIHQMISKTVFQESTYVVSALINMYSKCGDFHVAKKMFDDGLSGHMD 397

Query: 297 AVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHC 356
            +AW  MI+    +    EA  LF +M+  G    + T+  L  A       D G +   
Sbjct: 398 LIAWNGMIAAYAHHGYGNEAINLFNKMQELGFQANDVTYVGLLTACSHAGLFDEGFKYFD 457

Query: 357 VLMKT---ESESDLILENCLISMYAKCGVIDNAYNIFSNMVSR-DLVSWNSMVMGFSHHG 412
            L+K    +   D     CLI +  + G +D A NI   +     L  W +++ G S HG
Sbjct: 458 ELLKNRYIQVREDHY--TCLIDLCGRAGRLDEALNIIEGLGKEVSLSLWGALLAGCSVHG 515

Query: 413 LAN 415
            A+
Sbjct: 516 NAD 518



 Score =  108 bits (271), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 101/366 (27%), Positives = 161/366 (43%), Gaps = 50/366 (13%)

Query: 235 VQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPD 294
           ++ CN  I+   R G++ EA+ +FD +  RD   WT+MI GY+  G ++ A  LF + PD
Sbjct: 45  MKRCNYFISKLCREGKVNEARKVFDEMSKRDSCLWTTMISGYIKCGLINEARKLF-DRPD 103

Query: 295 --RDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDL-G 351
             +  + WTAM+SG ++     EA  LF EM    V   N               +DL G
Sbjct: 104 AQKSVIVWTAMVSGYIKMNRIEEAERLFNEMPVRNVVSWNTMIDGYARNGRTQEALDLFG 163

Query: 352 RQ---------------IHC-------VLMKTESESDLILENCLISMYAKCGVIDNAYNI 389
           R                 HC        L     E D++    +++  +K G +D A  +
Sbjct: 164 RMPERNVVSWNTVMTALAHCGRIDDAERLFNEMRERDVVSWTTMVAGLSKNGRVDAAREV 223

Query: 390 FSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLV 449
           F  M  R++VSWN+M+ G++ +G  +E LK+FE M E      +    G +      G +
Sbjct: 224 FDKMPIRNVVSWNAMIAGYAQNGRFDEALKLFERMPERDMPSWNTMVTGFI----QNGDL 279

Query: 450 SRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLP----FEPDHRIWG 505
           +R  +LF+AM      Q     + +M+    + G  +EA +   ++      +P    + 
Sbjct: 280 NRAEQLFHAM-----PQKNVITWTAMMTGYVQHGLSEEALKLFNKMQANDGLKPTTGTFV 334

Query: 506 ALLGAC----GFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGR-HVEEHKLRM 560
            +LGAC    G  EG  +I +  +K + +       A   L N+Y+  G  HV   K   
Sbjct: 335 TVLGACSDLAGLPEGQ-QIHQMISKTVFQESTYVVSA---LINMYSKCGDFHVA--KKMF 388

Query: 561 DMGLKG 566
           D GL G
Sbjct: 389 DDGLSG 394



 Score = 43.9 bits (102), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 56/233 (24%), Positives = 101/233 (43%), Gaps = 35/233 (15%)

Query: 9   SLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYN---AMLSGFLQNGRLSEARRLF 65
           SL+V++  S+      G +D A  ++  M +R     +     +  F + GR+ EA  L 
Sbjct: 674 SLIVYVKVSL------GDLDFALKMYNEMVRRGFSESSLVYTFIRAFCEKGRVDEAIGLM 727

Query: 66  EEMPERNVV----SWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELN 121
            EM  + +     ++  +I G AD+GR+ E   +FEEM          + VG + +G L 
Sbjct: 728 TEMEGKGLRAYDETYECVIVGCADSGRLNECWSVFEEM----------LSVGFVPSGLLF 777

Query: 122 EARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVV----TWTSMISGYC 177
           +  KV   +    V   N M+   ++   +   I  + EME +++      ++SMI  +C
Sbjct: 778 D--KVAEKLCDGEVEKVNDMLTVLLDKGFLPSDI--YYEMEYKSMCPGFSVYSSMIQCFC 833

Query: 178 RAGEVEEGYCLFRRMPRK----NVVSWTAMIGGFAWNGFHKESLLLFIEMKGI 226
              +V++     R M  +    NV  +  +I      G  + +L L  EM  +
Sbjct: 834 HLDKVDDAEKYLRIMKGRSLAPNVSIYEKLIADHMQKGNDESALQLRNEMASL 886


>gi|225428117|ref|XP_002278375.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62260,
           mitochondrial [Vitis vinifera]
          Length = 681

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 218/604 (36%), Positives = 350/604 (57%), Gaps = 47/604 (7%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWT 77
           I+   + G I+EA+ALF  MPQRN+V++N+M++G+++   +++AR+LF+EMP+R+VVSW 
Sbjct: 74  ISHLIRNGRINEARALFDAMPQRNIVTWNSMITGYVRRREMAKARKLFDEMPDRDVVSWN 133

Query: 78  AMICGLAD-AGR-VCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNV 135
            MI G     GR V E R LF+EMPER+ VSWN+M+ G  R+G ++EA ++F+SM  +NV
Sbjct: 134 LMISGYVSCQGRWVEEGRHLFDEMPERDCVSWNTMISGYTRSGRMDEALQLFDSMQERNV 193

Query: 136 ISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRK 195
           +SWNAM+ G+++   +  AI  F  M ER+  + +++++G  + GE++E   +     R+
Sbjct: 194 VSWNAMVTGFLQNGDVERAIEFFMRMPERDSASLSALVAGLIQNGELDEAKRILLTSRRQ 253

Query: 196 N------VVSWTAMIGGFAWNGFHKESLLLFIEMK----GICDNGN-NCNVQSCNSMING 244
           +      V ++  ++ G+  NG   ++  LF ++     G  D G    NV S NSMI  
Sbjct: 254 DDDKGDLVHAYNILLAGYGQNGRVDKARQLFDQIPFYDGGQKDGGRFERNVVSWNSMIMC 313

Query: 245 YIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMI 304
           Y++   +  A+ LFD +  RD ISW +MI GY+ +  +  A+ LF  MP+ D + W +MI
Sbjct: 314 YVKARDIFSARVLFDQMKERDTISWNTMISGYVRMSDMEEAWMLFQEMPNPDTLTWNSMI 373

Query: 305 SGLVQ-------------------------------NELFVEATYLFMEMRAHGVPPLNA 333
           SG  Q                               N  +  AT L+ +M   G  P   
Sbjct: 374 SGFAQKGNLELARALFATIPQKNLVSWNSMIAGYENNGDYKGATELYRQMLLQGEKPDRH 433

Query: 334 TFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNM 393
           T S +       A + LG QIH  + KT    D+ + N LI+MY++CG I  A  IF  +
Sbjct: 434 TLSSVLSVCSGFAALHLGMQIHQQITKTVI-PDIPINNSLITMYSRCGAIVEARTIFDEV 492

Query: 394 -VSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRG 452
            + ++++SWN+M+ G++ HG A + L++FE M      P  +TF+ +L+AC+HAG V  G
Sbjct: 493 KLQKEVISWNAMIGGYAFHGFAADALELFELMKRLKVRPTYITFISVLNACAHAGFVKEG 552

Query: 453 WELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACG 512
              F +M   + I+P  EH+ S+++++GR G+++EA + +  +PFEPD  +WGALLGAC 
Sbjct: 553 RMHFKSMACEFGIEPRIEHFASLVDIVGRHGQLEEAMDLINSMPFEPDKAVWGALLGACR 612

Query: 513 FCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPG 572
               N E+A  AA+ L++L+P ++  +V+L N+YA  G+     ++RM M    +RK PG
Sbjct: 613 -VHNNVELARVAAEALMKLEPESSAPYVLLHNMYADVGQWDNATEMRMMMERNNIRKQPG 671

Query: 573 CSWL 576
            SW+
Sbjct: 672 YSWV 675



 Score =  141 bits (356), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 113/436 (25%), Positives = 192/436 (44%), Gaps = 55/436 (12%)

Query: 165 NVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEM- 223
           ++ T    IS   R G + E   LF  MP++N+V+W +MI G+       ++  LF EM 
Sbjct: 66  DLYTPNKRISHLIRNGRINEARALFDAMPQRNIVTWNSMITGYVRRREMAKARKLFDEMP 125

Query: 224 -------------------------KGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLF 258
                                    + + D     +  S N+MI+GY R GR++EA  LF
Sbjct: 126 DRDVVSWNLMISGYVSCQGRWVEEGRHLFDEMPERDCVSWNTMISGYTRSGRMDEALQLF 185

Query: 259 DTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATY 318
           D++  R+ +SW +M+ G+L  G V  A   F  MP+RD+ + +A+++GL+QN    EA  
Sbjct: 186 DSMQERNVVSWNAMVTGFLQNGDVERAIEFFMRMPERDSASLSALVAGLIQNGELDEAKR 245

Query: 319 LFMEMRAHGVPP--LNATFSVLFGAAGATANIDLGRQIHCVLMKTES--------ESDLI 368
           + +  R        L   +++L    G    +D  RQ+   +   +         E +++
Sbjct: 246 ILLTSRRQDDDKGDLVHAYNILLAGYGQNGRVDKARQLFDQIPFYDGGQKDGGRFERNVV 305

Query: 369 LENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESG 428
             N +I  Y K   I +A  +F  M  RD +SWN+M+ G+       E   +F+ M    
Sbjct: 306 SWNSMIMCYVKARDIFSARVLFDQMKERDTISWNTMISGYVRMSDMEEAWMLFQEM---- 361

Query: 429 THPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEA 488
            +P+++T+  ++S  +  G +    EL  A+F     Q     + SMI      G  K A
Sbjct: 362 PNPDTLTWNSMISGFAQKGNL----ELARALFATIP-QKNLVSWNSMIAGYENNGDYKGA 416

Query: 489 EEFVLRLPFE---PDHRIWGALLGAC-GFCEGN--AEIAEHAAKRLLELDPLNAPAHVVL 542
            E   ++  +   PD     ++L  C GF   +   +I +   K ++   P+N      L
Sbjct: 417 TELYRQMLLQGEKPDRHTLSSVLSVCSGFAALHLGMQIHQQITKTVIPDIPINNS----L 472

Query: 543 CNIYAASGRHVEEHKL 558
             +Y+  G  VE   +
Sbjct: 473 ITMYSRCGAIVEARTI 488



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 83/278 (29%), Positives = 124/278 (44%), Gaps = 58/278 (20%)

Query: 229 NGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYL 288
           N  + ++ + N  I+  IR GR+ EA+ LFD +P R+ ++W SMI GY+   +++ A  L
Sbjct: 61  NSVSLDLYTPNKRISHLIRNGRINEARALFDAMPQRNIVTWNSMITGYVRRREMAKARKL 120

Query: 289 FHNMPDRDAVAWTAMISGLV--QNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATA 346
           F  MPDRD V+W  MISG V  Q     E  +LF EM                       
Sbjct: 121 FDEMPDRDVVSWNLMISGYVSCQGRWVEEGRHLFDEM----------------------- 157

Query: 347 NIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVM 406
                            E D +  N +IS Y + G +D A  +F +M  R++VSWN+MV 
Sbjct: 158 ----------------PERDCVSWNTMISGYTRSGRMDEALQLFDSMQERNVVSWNAMVT 201

Query: 407 GFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNA---MFDVY 463
           GF  +G     ++ F  M E  +          LSA   AGL+  G EL  A   +    
Sbjct: 202 GFLQNGDVERAIEFFMRMPERDS--------ASLSALV-AGLIQNG-ELDEAKRILLTSR 251

Query: 464 KIQPGPEHYVSMINLL----GRAGKIKEAEEFVLRLPF 497
           +        V   N+L    G+ G++ +A +   ++PF
Sbjct: 252 RQDDDKGDLVHAYNILLAGYGQNGRVDKARQLFDQIPF 289



 Score = 48.5 bits (114), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 52/217 (23%), Positives = 92/217 (42%), Gaps = 45/217 (20%)

Query: 347 NIDLGRQIHCVLM-----KTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSW 401
           N+     +HC +      K     DL   N  IS   + G I+ A  +F  M  R++V+W
Sbjct: 42  NLSPPPHLHCFVSTLQQPKNSVSLDLYTPNKRISHLIRNGRINEARALFDAMPQRNIVTW 101

Query: 402 NSMVMGFSHHGLANETLKVFESM----------------------LESGTH-------PN 432
           NSM+ G+       +  K+F+ M                      +E G H        +
Sbjct: 102 NSMITGYVRRREMAKARKLFDEMPDRDVVSWNLMISGYVSCQGRWVEEGRHLFDEMPERD 161

Query: 433 SVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFV 492
            V++  ++S  + +G +    +LF++M +   +      + +M+    + G ++ A EF 
Sbjct: 162 CVSWNTMISGYTRSGRMDEALQLFDSMQERNVVS-----WNAMVTGFLQNGDVERAIEFF 216

Query: 493 LRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLL 529
           +R+P E D     AL+   G  + N E+ E  AKR+L
Sbjct: 217 MRMP-ERDSASLSALV--AGLIQ-NGELDE--AKRIL 247


>gi|357148182|ref|XP_003574661.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Brachypodium distachyon]
          Length = 553

 Score =  395 bits (1015), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 211/565 (37%), Positives = 320/565 (56%), Gaps = 40/565 (7%)

Query: 36  LMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGR-VCEARK 94
           ++  R +V  N  ++   + G ++ ARR+F+ MP R+VVSW A++  L  AGR +  AR+
Sbjct: 1   MLATRLLVRDNQRITALARAGDVAAARRVFDAMPRRDVVSWNALLTALWRAGRDLPAARR 60

Query: 95  LFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEA 154
           LF++MP RNV+SWNS+V G + +G+L+ A   F   P +NV SWNAM+AG V    M +A
Sbjct: 61  LFDDMPSRNVISWNSVVAGCLAHGDLDAASAYFARAPRRNVASWNAMLAGLVRLGRMDDA 120

Query: 155 IVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHK 214
             LF EM +RNVV++T+M+ G  R GEV     +F  MP +N+VSW AMI          
Sbjct: 121 WALFGEMPQRNVVSYTTMVDGLARRGEVARAREVFDAMPERNLVSWAAMI---------- 170

Query: 215 ESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMID 274
                                        GY+     +EA+ LF+ +P ++ ++ T+MI 
Sbjct: 171 ----------------------------TGYVENAMFDEARKLFEAMPDKNVVACTAMIT 202

Query: 275 GYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNAT 334
           GY   G V +A  LF  +P +D ++W AMI+G V N    EA  L + M   GV P +AT
Sbjct: 203 GYCKDGDVESARRLFDGIPVKDVISWNAMITGYVHNGHGEEAMKLHIIMFREGVKPDHAT 262

Query: 335 FSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMV 394
              +  A  A A +  GR  H V  KT  ES     N L++MY+KCG +  +  +F N+ 
Sbjct: 263 LIAILTACSALALLRQGRSTHAVATKTMLESSTSFCNALMTMYSKCGNVGESELVFMNLK 322

Query: 395 SRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWE 454
            +D+VSWN+++  ++ HG   + + +F  M   G  PN +T L +LSAC H G V+   E
Sbjct: 323 IQDIVSWNTIIAAYAQHGKYQKAIALFHEMETRGLIPNDITILSMLSACGHVGRVNDSLE 382

Query: 455 LFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFC 514
           LF+ M   Y I P  EHY  ++++LGRAG++++A  ++ ++PFE +  +WGALLGA    
Sbjct: 383 LFDLMSSKYAISPSAEHYACVVDILGRAGQLEKACSYIKKMPFEAERNVWGALLGASK-T 441

Query: 515 EGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCS 574
            GN ++ E AAK L++ D +++  +V+L NIYAA+G   E +++R  M  KGV+K PG S
Sbjct: 442 HGNVQLGELAAKMLVQSDSVSSGPYVMLSNIYAAAGMWGEVNRVRGQMKEKGVKKQPGYS 501

Query: 575 WLMRNGGIQMFLSGDKIPAQVAEIL 599
           W      + MF+ GD    ++ +I+
Sbjct: 502 WTEIANKVNMFVGGDASHPEMNKII 526



 Score =  223 bits (569), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 141/417 (33%), Positives = 227/417 (54%), Gaps = 18/417 (4%)

Query: 7   PKSLVVHLTSSITKYSKRGF-IDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLF 65
           P+  VV   + +T   + G  +  A+ LF  MP RNV+S+N++++G L +G L  A   F
Sbjct: 34  PRRDVVSWNALLTALWRAGRDLPAARRLFDDMPSRNVISWNSVVAGCLAHGDLDAASAYF 93

Query: 66  EEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARK 125
              P RNV SW AM+ GL   GR+ +A  LF EMP+RNVVS+ +MV GL R GE+  AR+
Sbjct: 94  ARAPRRNVASWNAMLAGLVRLGRMDDAWALFGEMPQRNVVSYTTMVDGLARRGEVARARE 153

Query: 126 VFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEG 185
           VF++MP +N++SW AMI GYVE  M  EA  LFE M ++NVV  T+MI+GYC+ G+VE  
Sbjct: 154 VFDAMPERNLVSWAAMITGYVENAMFDEARKLFEAMPDKNVVACTAMITGYCKDGDVESA 213

Query: 186 YCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEM--KGICDNGNN--CNVQSCNSM 241
             LF  +P K+V+SW AMI G+  NG  +E++ L I M  +G+  +       + +C+++
Sbjct: 214 RRLFDGIPVKDVISWNAMITGYVHNGHGEEAMKLHIIMFREGVKPDHATLIAILTACSAL 273

Query: 242 INGYIRFGRLEEAQNLFDTVPVRDEISW-TSMIDGYLSVGQVSNAYYLFHNMPDRDAVAW 300
               +R GR   A  +     +    S+  +++  Y   G V  +  +F N+  +D V+W
Sbjct: 274 --ALLRQGRSTHA--VATKTMLESSTSFCNALMTMYSKCGNVGESELVFMNLKIQDIVSW 329

Query: 301 TAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMK 360
             +I+   Q+  + +A  LF EM   G+ P + T   +  A G    ++   ++   LM 
Sbjct: 330 NTIIAAYAQHGKYQKAIALFHEMETRGLIPNDITILSMLSACGHVGRVNDSLELFD-LMS 388

Query: 361 TESESDLILEN--CLISMYAKCGVIDNAYNIFSNM---VSRDLVSWNSMVMGFSHHG 412
           ++       E+  C++ +  + G ++ A +    M     R++  W +++     HG
Sbjct: 389 SKYAISPSAEHYACVVDILGRAGQLEKACSYIKKMPFEAERNV--WGALLGASKTHG 443


>gi|357167109|ref|XP_003581008.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Brachypodium distachyon]
          Length = 921

 Score =  393 bits (1010), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 226/664 (34%), Positives = 342/664 (51%), Gaps = 74/664 (11%)

Query: 7   PKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFE 66
           P   V    S +T Y     + +A  LF+ MPQRN+V++  M+SG+++  +  +   +F 
Sbjct: 153 PSRDVTSWNSMVTGYCHSRQMVDAWNLFKQMPQRNLVTWTVMISGYVRIEQHGKGWDIFR 212

Query: 67  EM-------PERNVVSWTAMICGLADAGRVCEAR-------------------------- 93
            M        + N  S  + + GL D G +   R                          
Sbjct: 213 MMHHEGASPDQSNFASVLSAVTGLQDLGVLEVLRPLVLKTGFESDVVIGTSILNVYTRDA 272

Query: 94  -------KLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYV 146
                  K F+ M ERN  +W++M+  L   G ++ A  V+   P+K++ S  A++ G  
Sbjct: 273 SALDIAIKFFDGMVERNEYTWSTMIAALSHGGRIDAAIAVYGRDPVKSIPSQTALLTGLA 332

Query: 147 ECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGG 206
            C  + EA +LFE++ +  VV+W +MI+GY + G V+E   LF RMP +N +SW  MI G
Sbjct: 333 RCGRITEARILFEQIPDPIVVSWNAMITGYMQNGMVDEAKELFDRMPFRNTISWAGMIAG 392

Query: 207 FAWNGFHKESLLLFIEMK---------------------GICDNGNN---------CNVQ 236
           +A NG  +E+L L   +                      G  + G           C   
Sbjct: 393 YAQNGRSEEALDLLQALHRNGMLPSLSSLTSSFLACSHIGALETGRQVHSLAVKAGCQFN 452

Query: 237 S--CNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPD 294
           S  CN++I+ Y +   +E  + +F+ + V+D +SW S I   +    + +A ++F NM  
Sbjct: 453 SYVCNALISMYGKCRNMEYVRQVFNRMRVKDTVSWNSFIAALVQNNMLEDARHIFDNMLS 512

Query: 295 RDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQI 354
           RD V+WT +IS   Q E   EA   F  M      P +   ++L    G   +  LG+QI
Sbjct: 513 RDVVSWTTIISAYAQAERGDEAVEFFKTMLHEHEKPNSPILTILLSVCGGLGSAKLGQQI 572

Query: 355 HCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLA 414
           H V +K   +S+LI+ N L+SMY KCG  D ++ +F +M  RD+ +WN+ + G + HGL 
Sbjct: 573 HTVAIKHGMDSELIVANALMSMYFKCGCAD-SHKVFDSMEERDIFTWNTFITGCAQHGLG 631

Query: 415 NETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVS 474
            E +K++E M   G  PN VTF+G+L+ACSHAGLV  GW+ F +M   Y + P  EHY  
Sbjct: 632 REAIKMYEHMESVGVLPNEVTFVGLLNACSHAGLVDEGWQFFKSMSRDYGLTPLLEHYAC 691

Query: 475 MINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPL 534
           M++LLGR G ++ AE+F+  +P EPD  IW ALLGAC     NAEI   AA++L   +P 
Sbjct: 692 MVDLLGRTGDVQGAEKFIYDMPIEPDTVIWSALLGACKI-HKNAEIGRRAAEKLFTTEPS 750

Query: 535 NAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQ 594
           NA  +V+L NIY++ G  VE  +LR  M  +GV K PGCSW+     +  F++GDK   +
Sbjct: 751 NAGNYVMLSNIYSSLGMWVEVAELRKIMKQRGVSKEPGCSWMQIRNKVHSFVTGDKQHEK 810

Query: 595 VAEI 598
           + EI
Sbjct: 811 IEEI 814



 Score =  238 bits (608), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 152/537 (28%), Positives = 259/537 (48%), Gaps = 97/537 (18%)

Query: 15  TSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVV 74
           ++ I + ++ G + EA+ +F  MP R+++++N+M+S +  +G L +AR LF+ +   NV 
Sbjct: 37  SARIRELARLGRLREAREVFDAMPHRDIIAWNSMISAYCNSGMLEDARILFDAISGGNVR 96

Query: 75  SWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKN 134
           + T ++ G A  GRV +AR++F+ MPERN V+WN+MV   ++NG++  AR++F++MP ++
Sbjct: 97  TATILLSGYARLGRVLDARRVFDGMPERNTVAWNAMVSCYVQNGDITMARRLFDAMPSRD 156

Query: 135 VISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRM-- 192
           V SWN+M+ GY     M +A  LF++M +RN+VTWT MISGY R  +  +G+ +FR M  
Sbjct: 157 VTSWNSMVTGYCHSRQMVDAWNLFKQMPQRNLVTWTVMISGYVRIEQHGKGWDIFRMMHH 216

Query: 193 -----PRKNVVSWTAMIGGFA---------------------------WNGFHKESLLLF 220
                 + N  S  + + G                              N + +++  L 
Sbjct: 217 EGASPDQSNFASVLSAVTGLQDLGVLEVLRPLVLKTGFESDVVIGTSILNVYTRDASALD 276

Query: 221 IEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRD--------------- 265
           I +K   D     N  + ++MI      GR++ A  ++   PV+                
Sbjct: 277 IAIK-FFDGMVERNEYTWSTMIAALSHGGRIDAAIAVYGRDPVKSIPSQTALLTGLARCG 335

Query: 266 ----------------EISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQ 309
                            +SW +MI GY+  G V  A  LF  MP R+ ++W  MI+G  Q
Sbjct: 336 RITEARILFEQIPDPIVVSWNAMITGYMQNGMVDEAKELFDRMPFRNTISWAGMIAGYAQ 395

Query: 310 NELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLIL 369
           N    EA  L   +  +G+ P  ++ +  F A      ++ GRQ+H + +K   + +  +
Sbjct: 396 NGRSEEALDLLQALHRNGMLPSLSSLTSSFLACSHIGALETGRQVHSLAVKAGCQFNSYV 455

Query: 370 ENCLISMYAKC-------------------------------GVIDNAYNIFSNMVSRDL 398
            N LISMY KC                                ++++A +IF NM+SRD+
Sbjct: 456 CNALISMYGKCRNMEYVRQVFNRMRVKDTVSWNSFIAALVQNNMLEDARHIFDNMLSRDV 515

Query: 399 VSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWEL 455
           VSW +++  ++     +E ++ F++ML     PNS     +LS C   G    G ++
Sbjct: 516 VSWTTIISAYAQAERGDEAVEFFKTMLHEHEKPNSPILTILLSVCGGLGSAKLGQQI 572


>gi|356532382|ref|XP_003534752.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09410-like [Glycine max]
          Length = 669

 Score =  393 bits (1009), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 220/593 (37%), Positives = 330/593 (55%), Gaps = 43/593 (7%)

Query: 7   PKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFE 66
           P+   V   S I  Y K   + EA+ +F+ MPQRNVV+ +AM+ G+ + GRL +AR++F+
Sbjct: 92  PQRDDVSYNSMIAVYLKNKDLLEAETVFKEMPQRNVVAESAMIDGYAKVGRLDDARKVFD 151

Query: 67  EMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKV 126
            M +RN  SWT++I G    G++ EA  LF++MPERNVVSW  +V+G  RNG ++ A + 
Sbjct: 152 NMTQRNAFSWTSLISGYFSCGKIEEALHLFDQMPERNVVSWTMVVLGFARNGLMDHAGRF 211

Query: 127 FNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGY 186
           F  MP KN+I+W AM+  Y++     EA  LF EM ERNV +W  MISG  RA  V+E  
Sbjct: 212 FYLMPEKNIIAWTAMVKAYLDNGCFSEAYKLFLEMPERNVRSWNIMISGCLRANRVDEAI 271

Query: 187 CLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYI 246
            LF  MP +N VSWTAM+ G A N           +M GI                    
Sbjct: 272 GLFESMPDRNHVSWTAMVSGLAQN-----------KMIGI-------------------- 300

Query: 247 RFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISG 306
                  A+  FD +P +D  +WT+MI   +  G +  A  LF  +P+++  +W  MI G
Sbjct: 301 -------ARKYFDLMPYKDMAAWTAMITACVDEGLMDEARKLFDQIPEKNVGSWNTMIDG 353

Query: 307 LVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESD 366
             +N    EA  LF+ M      P   T + +  +      +    Q H +++    E +
Sbjct: 354 YARNSYVGEALNLFVLMLRSCFRPNETTMTSVVTSCDGMVEL---MQAHAMVIHLGFEHN 410

Query: 367 LILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLE 426
             L N LI++Y+K G + +A  +F  + S+D+VSW +M++ +S+HG  +  L+VF  ML 
Sbjct: 411 TWLTNALITLYSKSGDLCSARLVFEQLKSKDVVSWTAMIVAYSNHGHGHHALQVFARMLV 470

Query: 427 SGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIK 486
           SG  P+ VTF+G+LSACSH GLV +G  LF+++   Y + P  EHY  ++++LGRAG + 
Sbjct: 471 SGIKPDEVTFVGLLSACSHVGLVHQGRRLFDSIKGTYNLTPKAEHYSCLVDILGRAGLVD 530

Query: 487 EAEEFVLRLPFEP-DHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNI 545
           EA + V  +P    D  +  ALLGAC    G+  IA    ++LLEL+P ++  +V+L N 
Sbjct: 531 EAMDVVATIPPSARDEAVLVALLGACRL-HGDVAIANSIGEKLLELEPSSSGGYVLLANT 589

Query: 546 YAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
           YAA G+  E  K+R  M  + V+++PG S +   G   +F+ G++   Q+ EI
Sbjct: 590 YAAEGQWDEFAKVRKRMRERNVKRIPGYSQIQITGKNHVFVVGERSHPQIEEI 642



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 51/220 (23%), Positives = 91/220 (41%), Gaps = 18/220 (8%)

Query: 358 LMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANET 417
           L    S+  L   N  I++  + G +D A  +F  M  RD VS+NSM+  +    L N+ 
Sbjct: 56  LKPRSSDDALHKRNVEITILGRHGKLDEARKLFDEMPQRDDVSYNSMIAVY----LKNKD 111

Query: 418 LKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMIN 477
           L   E++ +     N V    ++   +  G +    ++F+ M      Q     + S+I+
Sbjct: 112 LLEAETVFKEMPQRNVVAESAMIDGYAKVGRLDDARKVFDNM-----TQRNAFSWTSLIS 166

Query: 478 LLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAP 537
                GKI+EA     ++   P+  +    +   GF      + +HA +    +   N  
Sbjct: 167 GYFSCGKIEEALHLFDQM---PERNVVSWTMVVLGFARNG--LMDHAGRFFYLMPEKNII 221

Query: 538 AHVVLCNIYAASGRHVEEHKLRMDMGLKGVRK----VPGC 573
           A   +   Y  +G   E +KL ++M  + VR     + GC
Sbjct: 222 AWTAMVKAYLDNGCFSEAYKLFLEMPERNVRSWNIMISGC 261


>gi|357118286|ref|XP_003560887.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62260,
           mitochondrial-like [Brachypodium distachyon]
          Length = 676

 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 215/616 (34%), Positives = 341/616 (55%), Gaps = 33/616 (5%)

Query: 7   PKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGF---LQNGRLSEARR 63
           P   VV   S +   ++   +  A+A F  MP R+ VS+N +L+ +   L +  L+ ARR
Sbjct: 57  PARSVVTWNSFLAALARGRDVAAARAFFASMPVRDAVSWNTLLAAYSRSLNSEHLAAARR 116

Query: 64  LFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEA 123
           LF+EMP+R+ V+W  ++      G + EA KLF+EMP+RNV SWN+MV G    G++N+A
Sbjct: 117 LFDEMPQRDAVTWNTLLGAYVRRGLMVEAEKLFDEMPQRNVASWNTMVTGFFSAGQVNKA 176

Query: 124 RKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFE------EMEERNVVTWTSMISGYC 177
             +F++MP+K+  S   +++G+++   + EA  L        +M+E  V  + ++I+ Y 
Sbjct: 177 LDMFDAMPVKDSASLGTLVSGFIKNGRLHEAEELLTKRLRVTDMDE-AVDAYNTLIAAYG 235

Query: 178 RAGEVEEGYCLFRRMPR--------------KNVVSWTAMIGGFAWNGFHKESLLLFIEM 223
           + G V +   LF  +PR              +NVVSW +M+  +   G    +  +F EM
Sbjct: 236 QVGRVSDARRLFDMIPRGQYQCKTNNMRVFARNVVSWNSMMTCYIRTGDVCSAREIFNEM 295

Query: 224 KGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVS 283
                   + ++ S N+MI GY +   +EEA+ LF  +P  D +SW  +I G+   G V 
Sbjct: 296 P-------DKDLVSWNTMIAGYTKVSDMEEAEKLFWEMPDPDIVSWNLIIRGFTQKGDVE 348

Query: 284 NAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAG 343
           +A   F  MP+R  ++W  MISG  QN  +  A  LF +M   G  P   TFS +  A  
Sbjct: 349 HARGFFDRMPERGTISWNTMISGYEQNGHYDGAIELFTKMLEAGGTPDRHTFSSVLAACA 408

Query: 344 ATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNS 403
           +   + LG Q+H ++ K+    D    N L++MY++ G + +A  IF  M  +DLVSWN+
Sbjct: 409 SLPMLRLGAQLHQLIEKS-FLPDTATSNALMTMYSRGGALTDAEAIFKQMPQKDLVSWNA 467

Query: 404 MVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVY 463
           ++ G+ HHG A E L++FE M  +   P  +TF+ +LSAC +AGLVS GW +F+ M   Y
Sbjct: 468 LIGGYEHHGCATEALQLFEDMRSARVMPTHITFISLLSACGNAGLVSEGWMVFDTMIHEY 527

Query: 464 KIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEH 523
            I    EHY +++NL+GR G++ +A E +  +P  PD  +WGA LGAC   + N  +A  
Sbjct: 528 SIAARIEHYAALVNLIGRHGQLDDALEVINSMPIAPDRSVWGAFLGACT-AKKNELLAHM 586

Query: 524 AAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQ 583
           AAK L ++DP ++  +V++ N++A  GR      +R +M  +G+ K PG SW+  +  + 
Sbjct: 587 AAKALSKIDPESSAPYVLIHNLHAHEGRWGSASVVREEMEQQGIHKHPGYSWIDLHDKVH 646

Query: 584 MFLSGDKIPAQVAEIL 599
           +F+SGD       EI 
Sbjct: 647 VFISGDTSHPLTQEIF 662


>gi|297741829|emb|CBI33142.3| unnamed protein product [Vitis vinifera]
          Length = 1198

 Score =  390 bits (1003), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 204/533 (38%), Positives = 305/533 (57%), Gaps = 39/533 (7%)

Query: 68  MPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVF 127
           MP R+ VSW ++I G    G   E+++LF  MP +NVVSWNSM+ G I +  ++EA + F
Sbjct: 1   MPHRDTVSWNSIITGYWKNGCFDESKRLFGLMPTKNVVSWNSMIAGCIEDERIDEAWQYF 60

Query: 128 NSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYC 187
            +MP +N  SWNAMI+G V    + EA  LFEEM  RNV+++T+M+ GY + GE+E+   
Sbjct: 61  QAMPQRNTASWNAMISGLVRYDRVEEASRLFEEMPRRNVISYTAMVDGYAKIGEIEQARA 120

Query: 188 LFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIR 247
           LF  MP+KNVVSWT MI                                      +GY+ 
Sbjct: 121 LFNCMPQKNVVSWTVMI--------------------------------------SGYVE 142

Query: 248 FGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGL 307
            G+ +EA+NLF+ +P ++ ++ T+MI GY   G+   A  LF  +P RD  +W AMI+G 
Sbjct: 143 NGKFDEAENLFEQMPDKNIVAMTAMITGYCKEGKTDKAKILFDQIPCRDLASWNAMITGY 202

Query: 308 VQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDL 367
            QN    EA  L  +M   G+ P ++T   +  A  + A++  GR+ H +++K+  ES +
Sbjct: 203 AQNGSGEEALKLHSQMLKMGMQPDHSTLISVLTACSSLASLQEGRKTHVLVLKSGYESRI 262

Query: 368 ILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLES 427
            + N LI+MY KCG I ++   F  +   D+VSWN+M+  F+ HG  +  L  F  M  +
Sbjct: 263 SICNALITMYCKCGSILDSELAFRQIDHPDVVSWNAMIAAFARHGFYDRALASFGEMRSN 322

Query: 428 GTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKE 487
              P+ +TFL +LSAC HAG V      FN+M + YKI P PEH+  ++++L R G++++
Sbjct: 323 RVEPDGITFLSLLSACGHAGKVHESLNWFNSMIESYKIVPRPEHFACLVDILSRGGQVEK 382

Query: 488 AEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYA 547
           A + +  +PFE D  IWGALL AC     N ++ E AAK+++EL+P N+ A+VVL NIYA
Sbjct: 383 AYKIIQEMPFEADCGIWGALLAAC-HVHLNVKLGELAAKKIVELEPQNSGAYVVLSNIYA 441

Query: 548 ASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEILL 600
           A+G   E  ++R  M  +GV+K P  SW+  +  +  FL  D    ++  I L
Sbjct: 442 AAGMWGEVTRVRGLMREQGVKKQPAYSWMEIDNKVHFFLGDDASHPEIHRIRL 494



 Score =  246 bits (627), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 147/398 (36%), Positives = 220/398 (55%), Gaps = 20/398 (5%)

Query: 7   PKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFE 66
           P    V   S IT Y K G  DE+K LF LMP +NVVS+N+M++G +++ R+ EA + F+
Sbjct: 2   PHRDTVSWNSIITGYWKNGCFDESKRLFGLMPTKNVVSWNSMIAGCIEDERIDEAWQYFQ 61

Query: 67  EMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKV 126
            MP+RN  SW AMI GL    RV EA +LFEEMP RNV+S+ +MV G  + GE+ +AR +
Sbjct: 62  AMPQRNTASWNAMISGLVRYDRVEEASRLFEEMPRRNVISYTAMVDGYAKIGEIEQARAL 121

Query: 127 FNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGY 186
           FN MP KNV+SW  MI+GYVE     EA  LFE+M ++N+V  T+MI+GYC+ G+ ++  
Sbjct: 122 FNCMPQKNVVSWTVMISGYVENGKFDEAENLFEQMPDKNIVAMTAMITGYCKEGKTDKAK 181

Query: 187 CLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQS----CNSMI 242
            LF ++P +++ SW AMI G+A NG  +E+L L  +M  +    ++  + S    C+S+ 
Sbjct: 182 ILFDQIPCRDLASWNAMITGYAQNGSGEEALKLHSQMLKMGMQPDHSTLISVLTACSSL- 240

Query: 243 NGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTA 302
              ++ GR      L      R  I   ++I  Y   G + ++   F  +   D V+W A
Sbjct: 241 -ASLQEGRKTHVLVLKSGYESRISIC-NALITMYCKCGSILDSELAFRQIDHPDVVSWNA 298

Query: 303 MISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVL--MK 360
           MI+   ++  +  A   F EMR++ V P   TF  L  A G         ++H  L    
Sbjct: 299 MIAAFARHGFYDRALASFGEMRSNRVEPDGITFLSLLSACGHAG------KVHESLNWFN 352

Query: 361 TESESDLILEN-----CLISMYAKCGVIDNAYNIFSNM 393
           +  ES  I+       CL+ + ++ G ++ AY I   M
Sbjct: 353 SMIESYKIVPRPEHFACLVDILSRGGQVEKAYKIIQEM 390


>gi|147861249|emb|CAN79322.1| hypothetical protein VITISV_018985 [Vitis vinifera]
          Length = 932

 Score =  389 bits (1000), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 215/581 (37%), Positives = 338/581 (58%), Gaps = 44/581 (7%)

Query: 12  VHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPER 71
           V  T+ IT Y K   + +A+ LFQ MP R +V+ +AM+ G+ + G +  A+++F+ M + 
Sbjct: 7   VSYTAMITAYLKNNELRKAEKLFQTMPDRTIVAESAMIDGYAKAGLMDSAQKVFDAMIDT 66

Query: 72  NVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMP 131
           NV SWT++I G    G+V +A +LF++MP +NVVSW +MV+G  RNG +++AR VFN MP
Sbjct: 67  NVFSWTSLISGYFRDGQVAKACQLFDQMPAKNVVSWTTMVLGYARNGLIDQARSVFNQMP 126

Query: 132 IKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRR 191
            KN ISW AM+  YV+     EA+ LF EM +RN+ +W +MISG      V E + LF  
Sbjct: 127 EKNTISWTAMMKSYVDNGRTDEALKLFHEMPQRNLYSWNTMISGCLDGKRVNEAFKLFHL 186

Query: 192 MPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRL 251
           MP +N VSWT M+ G A NGF K +   F +M        N ++ + N+MI  Y+    +
Sbjct: 187 MPLRNAVSWTIMVSGLARNGFTKLAREYFDQMP-------NKDIAAWNAMITAYVDECLI 239

Query: 252 EEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNE 311
            EA  LF+ +  R+ ++W +MIDGY              + PD +A+             
Sbjct: 240 VEASELFNLMTERNIVTWNAMIDGYA------------RHRPDGEAM------------- 274

Query: 312 LFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILEN 371
                 +L + +R+  + P   T +++  +      +    Q H + +    E +  L N
Sbjct: 275 -----KHLILMLRS-CIRPNETTMTIILTSCWGMLEL---MQAHALAIVVGCECETSLSN 325

Query: 372 CLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHP 431
            LI+MY++ G I ++   F ++ ++D+VSW +M++ F++HG  +  L VF  ML+SGT P
Sbjct: 326 ALITMYSRIGDISSSRIAFESLKAKDVVSWTAMLLAFTYHGHGDHALHVFGHMLKSGTKP 385

Query: 432 NSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEF 491
           + +TF+G+LSACSHAGLV +G +LF++M   Y ++P  EHY  ++++LGRAG++ EA + 
Sbjct: 386 DEITFVGVLSACSHAGLVKKGQKLFDSMSRAYGLEPRAEHYSCLVDILGRAGQVHEAMDV 445

Query: 492 VLRLP-FEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASG 550
           V ++P  E D  + GALLGAC    GN E+A++  ++L+EL P ++  +V+L N++AA G
Sbjct: 446 VWKMPECERDGAVLGALLGACRL-HGNVEMADYIGQKLIELQPNSSGGYVLLANVFAARG 504

Query: 551 RHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKI 591
              E  ++R  M  + VRKVPG S +    G Q+     KI
Sbjct: 505 NWDEFAEVRKKMKDRNVRKVPGFSQIEFQQG-QILTGQPKI 544



 Score =  212 bits (540), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 124/354 (35%), Positives = 185/354 (52%), Gaps = 21/354 (5%)

Query: 7   PKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFE 66
           P   VV  T+ +  Y++ G ID+A+++F  MP++N +S+ AM+  ++ NGR  EA +LF 
Sbjct: 95  PAKNVVSWTTMVLGYARNGLIDQARSVFNQMPEKNTISWTAMMKSYVDNGRTDEALKLFH 154

Query: 67  EMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKV 126
           EMP+RN+ SW  MI G  D  RV EA KLF  MP RN VSW  MV GL RNG    AR+ 
Sbjct: 155 EMPQRNLYSWNTMISGCLDGKRVNEAFKLFHLMPLRNAVSWTIMVSGLARNGFTKLAREY 214

Query: 127 FNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCR---AGEVE 183
           F+ MP K++ +WNAMI  YV+ C++ EA  LF  M ERN+VTW +MI GY R    GE  
Sbjct: 215 FDQMPNKDIAAWNAMITAYVDECLIVEASELFNLMTERNIVTWNAMIDGYARHRPDGEAM 274

Query: 184 EGYCL-FRRMPRKNVVSWTAMIGGFAWNGF---HKESLLLFIEMKGICDNGNNCNVQSCN 239
           +   L  R   R N  + T ++    W         +L + +        G  C     N
Sbjct: 275 KHLILMLRSCIRPNETTMTIILTS-CWGMLELMQAHALAIVV--------GCECETSLSN 325

Query: 240 SMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNM----PDR 295
           ++I  Y R G +  ++  F+++  +D +SWT+M+  +   G   +A ++F +M       
Sbjct: 326 ALITMYSRIGDISSSRIAFESLKAKDVVSWTAMLLAFTYHGHGDHALHVFGHMLKSGTKP 385

Query: 296 DAVAWTAMISGLVQNELFVEATYLFMEM-RAHGVPPLNATFSVLFGAAGATANI 348
           D + +  ++S      L  +   LF  M RA+G+ P    +S L    G    +
Sbjct: 386 DEITFVGVLSACSHAGLVKKGQKLFDSMSRAYGLEPRAEHYSCLVDILGRAGQV 439



 Score =  200 bits (509), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 130/466 (27%), Positives = 224/466 (48%), Gaps = 48/466 (10%)

Query: 7   PKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFE 66
           P   +V  ++ I  Y+K G +D A+ +F  M   NV S+ +++SG+ ++G++++A +LF+
Sbjct: 33  PDRTIVAESAMIDGYAKAGLMDSAQKVFDAMIDTNVFSWTSLISGYFRDGQVAKACQLFD 92

Query: 67  EMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKV 126
           +MP +NVVSWT M+ G A  G + +AR +F +MPE+N +SW +M+   + NG  +EA K+
Sbjct: 93  QMPAKNVVSWTTMVLGYARNGLIDQARSVFNQMPEKNTISWTAMMKSYVDNGRTDEALKL 152

Query: 127 FNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGY 186
           F+ MP +N+ SWN MI+G ++   + EA  LF  M  RN V+WT M+SG  R G  +   
Sbjct: 153 FHEMPQRNLYSWNTMISGCLDGKRVNEAFKLFHLMPLRNAVSWTIMVSGLARNGFTKLAR 212

Query: 187 CLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYI 246
             F +MP K++ +W AMI  +           L +E   + +     N+ + N+MI+GY 
Sbjct: 213 EYFDQMPNKDIAAWNAMITAYV-------DECLIVEASELFNLMTERNIVTWNAMIDGYA 265

Query: 247 R---------------------------------FGRLE--EAQNLFDTVPVRDEISWT- 270
           R                                 +G LE  +A  L   V    E S + 
Sbjct: 266 RHRPDGEAMKHLILMLRSCIRPNETTMTIILTSCWGMLELMQAHALAIVVGCECETSLSN 325

Query: 271 SMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPP 330
           ++I  Y  +G +S++   F ++  +D V+WTAM+     +     A ++F  M   G  P
Sbjct: 326 ALITMYSRIGDISSSRIAFESLKAKDVVSWTAMLLAFTYHGHGDHALHVFGHMLKSGTKP 385

Query: 331 LNATFSVLFGAAGATANIDLGRQIHCVLMKTES-ESDLILENCLISMYAKCGVIDNAYNI 389
              TF  +  A      +  G+++   + +    E      +CL+ +  + G +  A ++
Sbjct: 386 DEITFVGVLSACSHAGLVKKGQKLFDSMSRAYGLEPRAEHYSCLVDILGRAGQVHEAMDV 445

Query: 390 FSNM--VSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNS 433
              M    RD     +++     HG       + + ++E    PNS
Sbjct: 446 VWKMPECERDGAVLGALLGACRLHGNVEMADYIGQKLIE--LQPNS 489


>gi|115476932|ref|NP_001062062.1| Os08g0481000 [Oryza sativa Japonica Group]
 gi|42409025|dbj|BAD10278.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113624031|dbj|BAF23976.1| Os08g0481000 [Oryza sativa Japonica Group]
 gi|215715342|dbj|BAG95093.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222640747|gb|EEE68879.1| hypothetical protein OsJ_27695 [Oryza sativa Japonica Group]
          Length = 563

 Score =  389 bits (999), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 213/565 (37%), Positives = 320/565 (56%), Gaps = 40/565 (7%)

Query: 36  LMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGR-VCEARK 94
           L   R +V  N  ++   + G ++ ARR+F+ MP R+ VSW A++  L  AGR +  AR 
Sbjct: 10  LASSRLLVRDNQRITALARAGDVAAARRVFDAMPRRDAVSWNALLTALWRAGRDLPAARS 69

Query: 95  LFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEA 154
           LF++MP RNV+SWNS++ G + +G+L  A   F   P +NV SWNAM+AG V    M +A
Sbjct: 70  LFDDMPSRNVISWNSIIAGCLAHGDLAAASAYFARAPRRNVASWNAMLAGLVRLGSMEDA 129

Query: 155 IVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHK 214
             LF++M ERNVV++T+M+ G  R GEV     LF  MP +N+VSW AMI          
Sbjct: 130 RSLFDQMPERNVVSYTTMVDGLARCGEVASARELFDAMPTRNLVSWAAMI---------- 179

Query: 215 ESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMID 274
                                       +GY+    LEEA+ LF+ +P ++ ++ T+MI 
Sbjct: 180 ----------------------------SGYVDNNMLEEARKLFEAMPEKNVVACTAMIT 211

Query: 275 GYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNAT 334
           GY   G + NA  LF  +  +D ++W A+ISG V N L  EAT L++ M   G+ P  AT
Sbjct: 212 GYCKEGDLQNARRLFDGIRAKDVISWNAIISGYVHNGLGEEATKLYIIMLREGIKPDQAT 271

Query: 335 FSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMV 394
              L  A  + A +  GR  H V++K   ES + + N L++MY+KCG +D +  +F ++ 
Sbjct: 272 LIALLTACSSLALLRQGRSTHAVVIKAMLESSISICNALMTMYSKCGNVDESELVFMSLK 331

Query: 395 SRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWE 454
           S+D+VSWN+++  ++ HG   + + +F  M   G  PN +TFL +LSAC HAG V    +
Sbjct: 332 SQDIVSWNTIIAAYAQHGRYQKVIALFHEMELCGLIPNDITFLSMLSACGHAGRVDESLK 391

Query: 455 LFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFC 514
           LF+ MF  Y I P  EHY  ++++L RAG++++A  ++  +P E +  +WG LL A    
Sbjct: 392 LFDLMFSKYAISPRAEHYACIVDILSRAGQLEKACSYIKEMPSEAEKNVWGTLLCASQ-T 450

Query: 515 EGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCS 574
            GN ++ E AAK L+  D  ++ A+V+L NIYAA+G   E +++R  M  KGV+K PG S
Sbjct: 451 HGNVQLGELAAKMLVLSDFESSGAYVMLSNIYAAAGMWGEVNRVRSQMKEKGVKKQPGHS 510

Query: 575 WLMRNGGIQMFLSGDKIPAQVAEIL 599
           W      + MF+ GD    ++  IL
Sbjct: 511 WTEIADKVHMFVGGDASHPEMDMIL 535



 Score =  219 bits (559), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 131/389 (33%), Positives = 218/389 (56%), Gaps = 9/389 (2%)

Query: 30  AKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRV 89
           A++LF  MP RNV+S+N++++G L +G L+ A   F   P RNV SW AM+ GL   G +
Sbjct: 67  ARSLFDDMPSRNVISWNSIIAGCLAHGDLAAASAYFARAPRRNVASWNAMLAGLVRLGSM 126

Query: 90  CEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECC 149
            +AR LF++MPERNVVS+ +MV GL R GE+  AR++F++MP +N++SW AMI+GYV+  
Sbjct: 127 EDARSLFDQMPERNVVSYTTMVDGLARCGEVASARELFDAMPTRNLVSWAAMISGYVDNN 186

Query: 150 MMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAW 209
           M+ EA  LFE M E+NVV  T+MI+GYC+ G+++    LF  +  K+V+SW A+I G+  
Sbjct: 187 MLEEARKLFEAMPEKNVVACTAMITGYCKEGDLQNARRLFDGIRAKDVISWNAIISGYVH 246

Query: 210 NGFHKESLLLFIEM--KGICDNGNN--CNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRD 265
           NG  +E+  L+I M  +GI  +       + +C+S+    +R GR   A  +   +    
Sbjct: 247 NGLGEEATKLYIIMLREGIKPDQATLIALLTACSSL--ALLRQGRSTHAVVIKAMLESSI 304

Query: 266 EISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRA 325
            I   +++  Y   G V  +  +F ++  +D V+W  +I+   Q+  + +   LF EM  
Sbjct: 305 SIC-NALMTMYSKCGNVDESELVFMSLKSQDIVSWNTIIAAYAQHGRYQKVIALFHEMEL 363

Query: 326 HGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILE-NCLISMYAKCGVID 384
            G+ P + TF  +  A G    +D   ++  ++    + S       C++ + ++ G ++
Sbjct: 364 CGLIPNDITFLSMLSACGHAGRVDESLKLFDLMFSKYAISPRAEHYACIVDILSRAGQLE 423

Query: 385 NAYNIFSNMVSR-DLVSWNSMVMGFSHHG 412
            A +    M S  +   W +++     HG
Sbjct: 424 KACSYIKEMPSEAEKNVWGTLLCASQTHG 452


>gi|255567371|ref|XP_002524665.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223536026|gb|EEF37684.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 2000

 Score =  387 bits (994), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 234/634 (36%), Positives = 361/634 (56%), Gaps = 51/634 (8%)

Query: 10  LVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMP 69
           LVVH    I+   +RG +DEA+ LF  MPQ N +S+ A++SGF++ GR+ E+   FE  P
Sbjct: 87  LVVH-NCMISANVQRGNLDEARKLFDEMPQTNEISWTALISGFMKYGRVRESMWYFERNP 145

Query: 70  ERNVVSWTAMICGLADAGRVCEARKLFEEMPER----NVVSWNSMV-------------- 111
            +NVVSWTA I G    G   EA KLF ++ E     N V++ S+V              
Sbjct: 146 FQNVVSWTAAISGYVQNGFSVEAMKLFIKLLESEVKPNKVTFTSVVRACANLGDFGLGMS 205

Query: 112 -VGLI--------------------RNGELNEARKVFNSMPIKNVISWNAMIAGYVECCM 150
            +GLI                    R GE++ AR+VF+ M  K+V+SW A++  YVE   
Sbjct: 206 VLGLIVKTGYEHDLAVSNSLITLCLRMGEIHLAREVFDRMEEKDVVSWTAILDLYVEMDE 265

Query: 151 MGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRK----NVVSWTAMIGG 206
           +GEA  +F+EM +RN V+W++MI+ YC++G  EE   LF RM ++    N+  +++++  
Sbjct: 266 LGEARRIFDEMPQRNEVSWSAMIARYCQSGYPEESLRLFCRMIQEGFKPNISCFSSILSA 325

Query: 207 FAWNGFHKESLLLFIEMKG-ICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRD 265
            A      E+L   + + G +   G   +V   +S+I+ Y + G  ++ + LFDT+  ++
Sbjct: 326 LA----SVEALQAGMNIHGHVTKIGFEKDVFVSSSLIDMYCKCGETKDGRFLFDTILEKN 381

Query: 266 EISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRA 325
            +SW +M+ GY   G +  A YLF+ MP R+ V+W+A+I+G +  E F E   +F EM  
Sbjct: 382 MVSWNAMVGGYSLNGHMEEAKYLFNIMPVRNNVSWSAIIAGHLDCEQFDEMFEVFNEMIL 441

Query: 326 HGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDN 385
            G  P  +TFS L  A  +TA++D G+ +H  ++K   + D  +   L  MYAK G I++
Sbjct: 442 LGEIPNKSTFSSLLCACASTASLDKGKNLHGKIVKLGIQCDTYVGTALTDMYAKSGDIES 501

Query: 386 AYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLE-SGTHPNSVTFLGILSACS 444
           +  +F+ M  ++ VSW +M+ G +  GLA E+L +FE M + S   PN V FL +L ACS
Sbjct: 502 SKKVFNRMPKKNEVSWTAMIQGLAESGLAEESLTLFEEMEKTSSIAPNEVMFLAVLFACS 561

Query: 445 HAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIW 504
           H+GLV +G   FN+M  VY ++P   H+  ++++L RAG++ EAEEF+  +PF+P+   W
Sbjct: 562 HSGLVDKGLWYFNSMEAVYGLKPKGRHFTCVVDMLSRAGRLFEAEEFIYSMPFQPETNAW 621

Query: 505 GALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGL 564
            ALL  C   + N E+AE  A +L E+   N   +V+L NIYA++GR  +  K+R  M  
Sbjct: 622 AALLSGCKTYK-NEELAERVAGKLWEMAEKNCAGYVLLSNIYASAGRWRDVLKVRKLMKA 680

Query: 565 KGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
           KG++K  GCSW+     +  F S D   +Q AEI
Sbjct: 681 KGLKKSGGCSWVEIRDRVHSFYSEDGAHSQSAEI 714



 Score =  188 bits (477), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 128/483 (26%), Positives = 221/483 (45%), Gaps = 71/483 (14%)

Query: 110 MVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTW 169
           M +   ++ E ++  K F+     +++  N MI+  V+   + EA  LF+EM + N ++W
Sbjct: 65  MYLNYRKSAEADQISKDFDGF---DLVVHNCMISANVQRGNLDEARKLFDEMPQTNEISW 121

Query: 170 TSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKG---- 225
           T++ISG+ + G V E    F R P +NVVSWTA I G+  NGF  E++ LFI++      
Sbjct: 122 TALISGFMKYGRVRESMWYFERNPFQNVVSWTAAISGYVQNGFSVEAMKLFIKLLESEVK 181

Query: 226 ----------------------------ICDNGNNCNVQSCNSMINGYIRFGRLEEAQNL 257
                                       I   G   ++   NS+I   +R G +  A+ +
Sbjct: 182 PNKVTFTSVVRACANLGDFGLGMSVLGLIVKTGYEHDLAVSNSLITLCLRMGEIHLAREV 241

Query: 258 FDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEAT 317
           FD +  +D +SWT+++D Y+ + ++  A  +F  MP R+ V+W+AMI+   Q+    E+ 
Sbjct: 242 FDRMEEKDVVSWTAILDLYVEMDELGEARRIFDEMPQRNEVSWSAMIARYCQSGYPEESL 301

Query: 318 YLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMY 377
            LF  M   G  P  + FS +  A  +   +  G  IH  + K   E D+ + + LI MY
Sbjct: 302 RLFCRMIQEGFKPNISCFSSILSALASVEALQAGMNIHGHVTKIGFEKDVFVSSSLIDMY 361

Query: 378 AKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHG------------------------- 412
            KCG   +   +F  ++ +++VSWN+MV G+S +G                         
Sbjct: 362 CKCGETKDGRFLFDTILEKNMVSWNAMVGGYSLNGHMEEAKYLFNIMPVRNNVSWSAIIA 421

Query: 413 ------LANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQ 466
                   +E  +VF  M+  G  PN  TF  +L AC+    + +G  L   +  +  IQ
Sbjct: 422 GHLDCEQFDEMFEVFNEMILLGEIPNKSTFSSLLCACASTASLDKGKNLHGKIVKL-GIQ 480

Query: 467 PGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGAL---LGACGFCEGNAEIAEH 523
                  ++ ++  ++G I+ +++   R+P + +   W A+   L   G  E +  + E 
Sbjct: 481 CDTYVGTALTDMYAKSGDIESSKKVFNRMP-KKNEVSWTAMIQGLAESGLAEESLTLFEE 539

Query: 524 AAK 526
             K
Sbjct: 540 MEK 542


>gi|413953302|gb|AFW85951.1| hypothetical protein ZEAMMB73_518426 [Zea mays]
          Length = 620

 Score =  387 bits (993), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 210/586 (35%), Positives = 333/586 (56%), Gaps = 48/586 (8%)

Query: 7   PKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFE 66
           P  L+V L ++       G + +A+ LF   P+R+VVS+ A++S + + G L +AR LF+
Sbjct: 43  PNRLIVDLAAA-------GRVWDARKLFDGTPERDVVSWTALVSAYARRGMLRDARSLFD 95

Query: 67  EM-PERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARK 125
                RNVV+WTA++ G A AG V EA  LF+ MP+RNVVSWN+M+      G   +A  
Sbjct: 96  RSDARRNVVTWTALLSGYARAGLVDEAEVLFQRMPQRNVVSWNTMLEAYAVAGRAGDACA 155

Query: 126 VFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEG 185
           +F+ MP+++  SWN ++A  V    + +A  LF  M ER+V+ WT+M+ G  R+G V+E 
Sbjct: 156 LFDRMPVRDAGSWNILLAMLVRSGSVDKARELFGRMPERDVMAWTTMVDGVARSGNVDEA 215

Query: 186 YCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGY 245
             LF  MP +NVVSW AMI G+  N    E+L LF +M        + ++ SCN MI G+
Sbjct: 216 RLLFDSMPERNVVSWNAMISGYTRNHRLDEALDLFTKMP-------HRDIASCNIMITGF 268

Query: 246 IRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMIS 305
           I+   L+ A+ LFD +P R+ ++WT+M++GYL   Q   +  LF  M          ++S
Sbjct: 269 IQNKDLKRARKLFDEMPERNVVTWTTMMNGYLKGKQSELSLGLFRGM----------LMS 318

Query: 306 GLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESES 365
           G+  N++                     TF     A    A +  G+Q+H ++ KT  + 
Sbjct: 319 GIRPNQV---------------------TFLGALDACSDLATLCEGKQVHQMICKTAFQV 357

Query: 366 DLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESML 425
           D  + + L+++YAKCG +  A  +F     +DL+SWN ++  ++HHG+  E + ++E M 
Sbjct: 358 DTFVGSALMNVYAKCGEVGLARKLFDLSREKDLISWNGIIAAYAHHGVGIEAIHLYEKMQ 417

Query: 426 ESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKI 485
            +G  PN VT++ +LSACSH+GLV  G ++F +M +   I    EHY  +I+L  RAG++
Sbjct: 418 GNGYRPNDVTYVVLLSACSHSGLVDEGLKIFESMVNDRSIAVRDEHYTCLIDLCSRAGRL 477

Query: 486 KEAEEFVLRLPFEP-DHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCN 544
            +A+  +  L  +P    +W ALLG C    GN  I   AA+ L++ +P NA  + +L N
Sbjct: 478 DDAKRLIHYLKIKPASGSVWSALLGGCN-AHGNESIGNLAARNLIQAEPDNAGTYTLLSN 536

Query: 545 IYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDK 590
           IYA++G+  E  ++R +M  +G++K PGCSW+     + +F++ DK
Sbjct: 537 IYASAGKWKEAAEIRSEMNNRGLKKQPGCSWIEVANKVHVFVARDK 582



 Score =  229 bits (583), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 135/426 (31%), Positives = 237/426 (55%), Gaps = 18/426 (4%)

Query: 3   ERNHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEAR 62
           +R+  +  VV  T+ ++ Y++ G +DEA+ LFQ MPQRNVVS+N ML  +   GR  +A 
Sbjct: 95  DRSDARRNVVTWTALLSGYARAGLVDEAEVLFQRMPQRNVVSWNTMLEAYAVAGRAGDAC 154

Query: 63  RLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNE 122
            LF+ MP R+  SW  ++  L  +G V +AR+LF  MPER+V++W +MV G+ R+G ++E
Sbjct: 155 ALFDRMPVRDAGSWNILLAMLVRSGSVDKARELFGRMPERDVMAWTTMVDGVARSGNVDE 214

Query: 123 ARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEV 182
           AR +F+SMP +NV+SWNAMI+GY     + EA+ LF +M  R++ +   MI+G+ +  ++
Sbjct: 215 ARLLFDSMPERNVVSWNAMISGYTRNHRLDEALDLFTKMPHRDIASCNIMITGFIQNKDL 274

Query: 183 EEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMI 242
           +    LF  MP +NVV+WT M+ G+      + SL LF   +G+  +G   N  +    +
Sbjct: 275 KRARKLFDEMPERNVVTWTTMMNGYLKGKQSELSLGLF---RGMLMSGIRPNQVTFLGAL 331

Query: 243 NGYIRFGRLEEA----QNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAV 298
           +       L E     Q +  T    D    +++++ Y   G+V  A  LF    ++D +
Sbjct: 332 DACSDLATLCEGKQVHQMICKTAFQVDTFVGSALMNVYAKCGEVGLARKLFDLSREKDLI 391

Query: 299 AWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVL 358
           +W  +I+    + + +EA +L+ +M+ +G  P + T+ VL  A   +  +D G +I   +
Sbjct: 392 SWNGIIAAYAHHGVGIEAIHLYEKMQGNGYRPNDVTYVVLLSACSHSGLVDEGLKIFESM 451

Query: 359 MKTESESDLILEN----CLISMYAKCGVIDNAYNIFSNMVSRDLVS--WNSMVMGFSHHG 412
           +   S   + + +    CLI + ++ G +D+A  +   +  +      W++++ G + HG
Sbjct: 452 VNDRS---IAVRDEHYTCLIDLCSRAGRLDDAKRLIHYLKIKPASGSVWSALLGGCNAHG 508

Query: 413 LANETL 418
             NE++
Sbjct: 509 --NESI 512



 Score = 99.0 bits (245), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 66/225 (29%), Positives = 103/225 (45%), Gaps = 13/225 (5%)

Query: 236 QSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLF-HNMPD 294
           Q  N +I      GR+ +A+ LFD  P RD +SWT+++  Y   G + +A  LF  +   
Sbjct: 41  QDPNRLIVDLAAAGRVWDARKLFDGTPERDVVSWTALVSAYARRGMLRDARSLFDRSDAR 100

Query: 295 RDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQI 354
           R+ V WTA++SG  +  L  EA  LF  M    V   N      +  AG   +       
Sbjct: 101 RNVVTWTALLSGYARAGLVDEAEVLFQRMPQRNVVSWNTMLEA-YAVAGRAGDA------ 153

Query: 355 HCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLA 414
            C L       D    N L++M  + G +D A  +F  M  RD+++W +MV G +  G  
Sbjct: 154 -CALFDRMPVRDAGSWNILLAMLVRSGSVDKARELFGRMPERDVMAWTTMVDGVARSGNV 212

Query: 415 NETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAM 459
           +E   +F+SM E     N V++  ++S  +    +    +LF  M
Sbjct: 213 DEARLLFDSMPER----NVVSWNAMISGYTRNHRLDEALDLFTKM 253


>gi|325260825|gb|ADZ04643.1| hypothetical protein [Oryza punctata]
          Length = 674

 Score =  385 bits (990), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 225/636 (35%), Positives = 338/636 (53%), Gaps = 67/636 (10%)

Query: 13  HLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERN 72
           HL + +T Y +RG + +A+ LF  MP R+V+S+ A+L+ +   G L+ AR +F++MP RN
Sbjct: 40  HLNALLTAYGRRGRLRDAQLLFDQMPSRDVISWTALLTAYADGGDLASARLVFDDMPRRN 99

Query: 73  VVSWTAM-------------------------------ICGLADAGRVCEARKLFEEMPE 101
             SW A+                               I GLA AG + EA  ++EEMP+
Sbjct: 100 APSWNALLSVYLRAARPRAAHALFYKMPAKNAVSYGAIISGLAKAGMLREAELVYEEMPQ 159

Query: 102 --RNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFE 159
             R+ V  N+++ G +R GEL  A +VF  M +++VISW+AM+ G  +   + EA  +F+
Sbjct: 160 QWRDPVGSNALMAGYLRVGELAMALRVFEGMTVRDVISWSAMVDGLCKHGSVSEARRVFD 219

Query: 160 EMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNV--------VSWTAMIG------ 205
            M ER+VV+WTSMI GY + G   +G  LF  M R+ V        V   A  G      
Sbjct: 220 AMPERSVVSWTSMIRGYVKRGMCSDGLLLFLNMRREGVQVNATTLSVVLDACAGASLARE 279

Query: 206 -----------GFAWNGFHKESLLLFIEMKGICDNGN---NC----NVQSCNSMINGYIR 247
                      GF  + F  +S+++     G   +     NC    ++ S NS+I GY++
Sbjct: 280 GIQIHNLIISMGFELDIFLGDSVIIMYSRFGWMADAQRAFNCMQQKDIVSWNSLITGYVQ 339

Query: 248 FGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGL 307
              +EEA  LF  +P +D +SWTSM+ G+ + G +  +  LF  MP +D VAWTA+IS  
Sbjct: 340 HDMVEEAHVLFKLMPQKDAVSWTSMVVGFANRGWMRESVELFEQMPVKDVVAWTAIISSF 399

Query: 308 VQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDL 367
           + N  ++ A   F  M   G  P   TFS L  A  + A ++ GRQ H   +      D 
Sbjct: 400 ITNGDYLSAVRWFCRMSQEGCKPNTITFSCLLSALASLAMLNQGRQAHAYSINMGWVFDS 459

Query: 368 ILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLES 427
            +   LISMYAKCG +  A+++FS++ +  L++ NSM+  F  HG A + LK+F  M  +
Sbjct: 460 AVHTSLISMYAKCGRLAEAHHVFSSISNPSLIAINSMITAFVQHGFAEDALKLFTKMQNA 519

Query: 428 GTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKE 487
           G  PN VTFLGIL+ C+ AG V +G+  F +M  VY ++P PEHY  M++LLGRAG + E
Sbjct: 520 GYKPNHVTFLGILTGCARAGFVQQGYNYFESMRPVYGVEPNPEHYTCMVDLLGRAGLLAE 579

Query: 488 AEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYA 547
           A E +  +P       W ALL A      N   A+ AA++LLE DP +A A+ VL  +++
Sbjct: 580 ALEMINSMPQNDHSDAWAALLSASSL-HSNLAFAKIAAQKLLEKDPYDATAYTVLSKMFS 638

Query: 548 ASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQ 583
           ++G   EE +  + +      K PG S +M++   +
Sbjct: 639 SAGMEYEEMQKVVQLS-NMASKRPGYSLIMQDKATE 673


>gi|357139571|ref|XP_003571354.1| PREDICTED: pentatricopeptide repeat-containing protein At1g53600,
           mitochondrial-like [Brachypodium distachyon]
          Length = 673

 Score =  385 bits (990), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 222/627 (35%), Positives = 332/627 (52%), Gaps = 66/627 (10%)

Query: 13  HLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERN 72
           HL + +T Y +RG + +A+ LF  MP+R+V+S+ A+L+ +  NG  + AR +F++MP RN
Sbjct: 44  HLNALLTSYGRRGMLRDAQQLFDRMPRRDVISWTALLTAYADNGDPASARLVFDDMPRRN 103

Query: 73  VVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMP- 131
             SW A++     AG+   A  LF +MP RN VS+ +M+ GL R G L EA  VF  MP 
Sbjct: 104 AASWNALLSLYLRAGQPAAAHALFSKMPARNAVSYGAMISGLARAGMLREAEAVFAEMPW 163

Query: 132 -IKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFR 190
             ++ +  NA+IA YV    +  A+ +FE M  R+V++WT+++ G C+ G V E   +F 
Sbjct: 164 RWRDPVGSNALIAAYVRAGELSLALRVFEGMAVRDVISWTAVVDGLCKNGSVLEARKVFE 223

Query: 191 RMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMK--GICDNGNNCNV--QSC-------- 238
            MP +NVVSWT+MI G+   G  ++ LLLF  M+  G+  N    +V   +C        
Sbjct: 224 AMPERNVVSWTSMILGYVKLGRRRDGLLLFQNMRREGVQVNTTTLSVALDACAESSLVRE 283

Query: 239 --------------------NSMINGYIRFG----------------------------- 249
                               +S+I  Y RFG                             
Sbjct: 284 GIQIHGLIIAMGFEMDVFLGDSLITLYSRFGWMVDARRVFAYMTWKDVVSWNSLITGYVQ 343

Query: 250 --RLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGL 307
              +EEA  LF  +P +D +SWTSM+ G+ + G ++ A  LF  MP +D VAWTA+IS L
Sbjct: 344 HNMVEEAHVLFKLMPEKDAVSWTSMVVGFANRGWITEAIELFEQMPGKDEVAWTAVISSL 403

Query: 308 VQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDL 367
           V N  ++ A   F  M   G  P    FS L  A  +   ++ G Q H   +      D 
Sbjct: 404 VTNGDYLSAVRWFCRMAQEGCKPNTIAFSCLLSALASLTMLNQGMQAHAYAINMGWIFDS 463

Query: 368 ILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLES 427
            +   L+SMYAKCG +  AY++FS++ +  L++ NSM+  F  H L  +  K+F  M   
Sbjct: 464 SIHTSLVSMYAKCGRLAEAYHVFSSISNPSLIATNSMITAFVQHDLVEDAFKLFTKMQND 523

Query: 428 GTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKE 487
           G  PN VTFLGIL+ C+ AGLV +G+  F +M  VY I+P P+HY  M++LLGRAG + E
Sbjct: 524 GHKPNHVTFLGILTGCARAGLVQQGYNYFGSMKSVYGIEPNPDHYTCMVDLLGRAGLLAE 583

Query: 488 AEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYA 547
           A E +  +P + D+    A L +      +   A+ AA++LLE+DP +A A+ VL N+++
Sbjct: 584 ALEMINSMP-QNDNSDAWAALLSASSLHSSLTFAKIAAQKLLEMDPYDATAYTVLSNMFS 642

Query: 548 ASGRHVEEHKLRMDMGLKGVRKVPGCS 574
           ++G   +E  L++        K PG S
Sbjct: 643 SAGMKNDEEMLKVVQLSNMASKSPGYS 669


>gi|222622177|gb|EEE56309.1| hypothetical protein OsJ_05395 [Oryza sativa Japonica Group]
          Length = 922

 Score =  385 bits (989), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 227/665 (34%), Positives = 343/665 (51%), Gaps = 74/665 (11%)

Query: 7   PKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFE 66
           P   V    S +T Y     + +A+ LF+ MP+RN+VS+  M+SG+ +     +A  +F 
Sbjct: 154 PSRDVSSWNSMLTGYCHSLQMVDARNLFEKMPERNLVSWTVMISGYGRIENHGKAWDIFC 213

Query: 67  EMP---------------------------------------ERNVVSWTAMICGLA-DA 86
           +M                                        ER+VV  TA++   + D 
Sbjct: 214 KMHREGLLPDQSNFASALSAVKGLGNLDVLESLRVLALKTGFERDVVIGTAILNVYSRDT 273

Query: 87  GRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYV 146
             +  A K FE M ERN  +W++M+  L   G ++ A  V+   P+K++    A+I G  
Sbjct: 274 SVLDTAIKFFESMIERNEYTWSTMIAALSHGGRIDAAIAVYERDPVKSIACRTALITGLA 333

Query: 147 ECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGG 206
           +C  + +A +LFE++ E  VV+W ++I+GY + G V E   LF +MP +N +SW  MI G
Sbjct: 334 QCGRIDDARILFEQIPEPIVVSWNALITGYMQNGMVNEAKELFDKMPFRNTISWAGMIAG 393

Query: 207 FAWNGFHKESLLLFIEMKG---------------ICDN-----------------GNNCN 234
           +A NG  +E+L L  E+                  C N                 G   N
Sbjct: 394 YAQNGRSEEALGLLQELHRSGMLPSLSSLTSIFFACSNIVALETGTQVHSLAVKVGCQFN 453

Query: 235 VQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPD 294
             +CN++I  Y +   +E A+ +F  +  +D +SW S +   +    +  A   F NM  
Sbjct: 454 SFACNALITMYGKCRNMEYARQVFSRMVTKDIVSWNSFLAALVQNDLLDEARNTFDNMLS 513

Query: 295 RDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQI 354
           RD V+WT +IS     E   EA   F  M      P +   ++L G  G+     +G+QI
Sbjct: 514 RDDVSWTTIISAYAHAEQSNEAMGAFKTMFCEHELPNSPILTILLGVCGSLGASKIGQQI 573

Query: 355 HCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLA 414
           H V +K   +S+LI+ N LISMY KCG  D +  IF  M  RD+ +WN+++ G++ HGL 
Sbjct: 574 HTVAIKLGMDSELIVANALISMYFKCGCAD-SRRIFDLMEERDIFTWNTIITGYAQHGLG 632

Query: 415 NETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVS 474
            E +K+++ M  +G  PN VTF+G+L+ACSHAGLV  GW+ F +M   Y + P PEHY  
Sbjct: 633 REAIKMYQHMESAGVLPNEVTFVGLLNACSHAGLVDEGWKFFKSMSQDYGLTPLPEHYAC 692

Query: 475 MINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPL 534
           M++LLGR G ++ AE+F+  +P EPD  IW ALLGAC     NAEI + AA++L  ++P 
Sbjct: 693 MVDLLGRTGDVQGAEQFIYDMPIEPDTVIWSALLGACKI-HKNAEIGKRAAEKLFRIEPS 751

Query: 535 NAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQ 594
           NA  +V+L NIY++ G   E  ++R  M  +GV K PGCSW      +  F++GDK   Q
Sbjct: 752 NAGNYVMLSNIYSSLGMWGEVAEVRKIMKQQGVIKEPGCSWTQIKDKMHSFVTGDKQHEQ 811

Query: 595 VAEIL 599
           + EI+
Sbjct: 812 IEEIV 816



 Score =  238 bits (608), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 149/528 (28%), Positives = 261/528 (49%), Gaps = 68/528 (12%)

Query: 6   HPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLF 65
           H +  V   ++ I    + G + EA+ +F  MP+R+++++N+M+S +  NG    AR L+
Sbjct: 29  HGELEVSGCSARIRDLGRLGRVGEAREVFDAMPRRDIIAWNSMISAYCHNGMPDAARDLY 88

Query: 66  EEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARK 125
           + +   N+ +   ++ G    GRV EAR++F+ M ERN V+WN+M+   ++NG++  AR+
Sbjct: 89  DAISGGNMRTGAILLSGYGRLGRVLEARRVFDGMLERNTVAWNAMISCYVQNGDITMARR 148

Query: 126 VFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEG 185
           +F++MP ++V SWN+M+ GY     M +A  LFE+M ERN+V+WT MISGY R     + 
Sbjct: 149 LFDAMPSRDVSSWNSMLTGYCHSLQMVDARNLFEKMPERNLVSWTVMISGYGRIENHGKA 208

Query: 186 YCLFRRMPRK-------NVVSWTAMIGGFA-------------WNGFHKESLL------L 219
           + +F +M R+       N  S  + + G                 GF ++ ++      +
Sbjct: 209 WDIFCKMHREGLLPDQSNFASALSAVKGLGNLDVLESLRVLALKTGFERDVVIGTAILNV 268

Query: 220 FIEMKGICDNGNNC-------NVQSCNSMINGYIRFGRLEEAQNLFDTVPVR-------- 264
           +     + D            N  + ++MI      GR++ A  +++  PV+        
Sbjct: 269 YSRDTSVLDTAIKFFESMIERNEYTWSTMIAALSHGGRIDAAIAVYERDPVKSIACRTAL 328

Query: 265 ----------DE-------------ISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWT 301
                     D+             +SW ++I GY+  G V+ A  LF  MP R+ ++W 
Sbjct: 329 ITGLAQCGRIDDARILFEQIPEPIVVSWNALITGYMQNGMVNEAKELFDKMPFRNTISWA 388

Query: 302 AMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKT 361
            MI+G  QN    EA  L  E+   G+ P  ++ + +F A      ++ G Q+H + +K 
Sbjct: 389 GMIAGYAQNGRSEEALGLLQELHRSGMLPSLSSLTSIFFACSNIVALETGTQVHSLAVKV 448

Query: 362 ESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVF 421
             + +    N LI+MY KC  ++ A  +FS MV++D+VSWNS +     + L +E    F
Sbjct: 449 GCQFNSFACNALITMYGKCRNMEYARQVFSRMVTKDIVSWNSFLAALVQNDLLDEARNTF 508

Query: 422 ESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGP 469
           ++ML      + V++  I+SA +HA   +     F  MF  +++   P
Sbjct: 509 DNMLSR----DDVSWTTIISAYAHAEQSNEAMGAFKTMFCEHELPNSP 552



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 105/404 (25%), Positives = 191/404 (47%), Gaps = 63/404 (15%)

Query: 3   ERNHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEAR 62
           ER+  KS+    T+ IT  ++ G ID+A+ LF+ +P+  VVS+NA+++G++QNG ++EA+
Sbjct: 315 ERDPVKSIACR-TALITGLAQCGRIDDARILFEQIPEPIVVSWNALITGYMQNGMVNEAK 373

Query: 63  RLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMP---------------------- 100
            LF++MP RN +SW  MI G A  GR  EA  L +E+                       
Sbjct: 374 ELFDKMPFRNTISWAGMIAGYAQNGRSEEALGLLQELHRSGMLPSLSSLTSIFFACSNIV 433

Query: 101 -----------------ERNVVSWNSMVV--GLIRNGELNEARKVFNSMPIKNVISWNAM 141
                            + N  + N+++   G  RN E   AR+VF+ M  K+++SWN+ 
Sbjct: 434 ALETGTQVHSLAVKVGCQFNSFACNALITMYGKCRNMEY--ARQVFSRMVTKDIVSWNSF 491

Query: 142 IAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRM------PRK 195
           +A  V+  ++ EA   F+ M  R+ V+WT++IS Y  A +  E    F+ M      P  
Sbjct: 492 LAALVQNDLLDEARNTFDNMLSRDDVSWTTIISAYAHAEQSNEAMGAFKTMFCEHELPNS 551

Query: 196 NVVS-WTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEA 254
            +++    + G    +   ++   + I++      G +  +   N++I+ Y + G   ++
Sbjct: 552 PILTILLGVCGSLGASKIGQQIHTVAIKL------GMDSELIVANALISMYFKCG-CADS 604

Query: 255 QNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDR----DAVAWTAMISGLVQN 310
           + +FD +  RD  +W ++I GY   G    A  ++ +M       + V +  +++     
Sbjct: 605 RRIFDLMEERDIFTWNTIITGYAQHGLGREAIKMYQHMESAGVLPNEVTFVGLLNACSHA 664

Query: 311 ELFVEATYLFMEM-RAHGVPPLNATFSVLFGAAGATANIDLGRQ 353
            L  E    F  M + +G+ PL   ++ +    G T ++    Q
Sbjct: 665 GLVDEGWKFFKSMSQDYGLTPLPEHYACMVDLLGRTGDVQGAEQ 708


>gi|297720883|ref|NP_001172804.1| Os02g0151000 [Oryza sativa Japonica Group]
 gi|51535971|dbj|BAD38052.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|218190072|gb|EEC72499.1| hypothetical protein OsI_05871 [Oryza sativa Indica Group]
 gi|255670608|dbj|BAH91533.1| Os02g0151000 [Oryza sativa Japonica Group]
          Length = 922

 Score =  385 bits (989), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 227/665 (34%), Positives = 343/665 (51%), Gaps = 74/665 (11%)

Query: 7   PKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFE 66
           P   V    S +T Y     + +A+ LF+ MP+RN+VS+  M+SG+ +     +A  +F 
Sbjct: 154 PSRDVSSWNSMLTGYCHSLQMVDARNLFEKMPERNLVSWTVMISGYGRIENHGKAWDIFC 213

Query: 67  EMP---------------------------------------ERNVVSWTAMICGLA-DA 86
           +M                                        ER+VV  TA++   + D 
Sbjct: 214 KMHREGLLPDQSNFASALSAVKGLGNLDVLESLRVLALKTGFERDVVIGTAILNVYSRDT 273

Query: 87  GRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYV 146
             +  A K FE M ERN  +W++M+  L   G ++ A  V+   P+K++    A+I G  
Sbjct: 274 SVLDTAIKFFESMIERNEYTWSTMIAALSHGGRIDAAIAVYERDPVKSIACRTALITGLA 333

Query: 147 ECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGG 206
           +C  + +A +LFE++ E  VV+W ++I+GY + G V E   LF +MP +N +SW  MI G
Sbjct: 334 QCGRIDDARILFEQIPEPIVVSWNALITGYMQNGMVNEAKELFDKMPFRNTISWAGMIAG 393

Query: 207 FAWNGFHKESLLLFIEMKG---------------ICDN-----------------GNNCN 234
           +A NG  +E+L L  E+                  C N                 G   N
Sbjct: 394 YAQNGRSEEALGLLQELHRSGMLPSLSSLTSIFFACSNIVALETGTQVHSLAVKVGCQFN 453

Query: 235 VQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPD 294
             +CN++I  Y +   +E A+ +F  +  +D +SW S +   +    +  A   F NM  
Sbjct: 454 SFACNALITMYGKCRNMEYARQVFSRMVTKDIVSWNSFLAALVQNDLLDEARNTFDNMLS 513

Query: 295 RDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQI 354
           RD V+WT +IS     E   EA   F  M      P +   ++L G  G+     +G+QI
Sbjct: 514 RDDVSWTTIISAYAHAEQSNEAMGAFKTMFCEHELPNSPILTILLGVCGSLGASKIGQQI 573

Query: 355 HCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLA 414
           H V +K   +S+LI+ N LISMY KCG  D +  IF  M  RD+ +WN+++ G++ HGL 
Sbjct: 574 HTVAIKLGMDSELIVANALISMYFKCGCAD-SRRIFDLMEERDIFTWNTIITGYAQHGLG 632

Query: 415 NETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVS 474
            E +K+++ M  +G  PN VTF+G+L+ACSHAGLV  GW+ F +M   Y + P PEHY  
Sbjct: 633 REAIKMYQHMESAGVLPNEVTFVGLLNACSHAGLVDEGWKFFKSMSQDYGLTPLPEHYAC 692

Query: 475 MINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPL 534
           M++LLGR G ++ AE+F+  +P EPD  IW ALLGAC     NAEI + AA++L  ++P 
Sbjct: 693 MVDLLGRTGDVQGAEQFIYDMPIEPDTVIWSALLGACKI-HKNAEIGKRAAEKLFRIEPS 751

Query: 535 NAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQ 594
           NA  +V+L NIY++ G   E  ++R  M  +GV K PGCSW      +  F++GDK   Q
Sbjct: 752 NAGNYVMLSNIYSSLGMWGEVAEVRKIMKQQGVIKEPGCSWTQIKDKMHSFVTGDKQHEQ 811

Query: 595 VAEIL 599
           + EI+
Sbjct: 812 IEEIV 816



 Score =  238 bits (608), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 149/528 (28%), Positives = 261/528 (49%), Gaps = 68/528 (12%)

Query: 6   HPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLF 65
           H +  V   ++ I    + G + EA+ +F  MP+R+++++N+M+S +  NG    AR L+
Sbjct: 29  HGELEVSGCSARIRDLGRLGRVGEAREVFDAMPRRDIIAWNSMISAYCHNGMPDAARDLY 88

Query: 66  EEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARK 125
           + +   N+ +   ++ G    GRV EAR++F+ M ERN V+WN+M+   ++NG++  AR+
Sbjct: 89  DAISGGNMRTGAILLSGYGRLGRVLEARRVFDGMLERNTVAWNAMISCYVQNGDITMARR 148

Query: 126 VFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEG 185
           +F++MP ++V SWN+M+ GY     M +A  LFE+M ERN+V+WT MISGY R     + 
Sbjct: 149 LFDAMPSRDVSSWNSMLTGYCHSLQMVDARNLFEKMPERNLVSWTVMISGYGRIENHGKA 208

Query: 186 YCLFRRMPRK-------NVVSWTAMIGGFA-------------WNGFHKESLL------L 219
           + +F +M R+       N  S  + + G                 GF ++ ++      +
Sbjct: 209 WDIFCKMHREGLLPDQSNFASALSAVKGLGNLDVLESLRVLALKTGFERDVVIGTAILNV 268

Query: 220 FIEMKGICDNGNNC-------NVQSCNSMINGYIRFGRLEEAQNLFDTVPVR-------- 264
           +     + D            N  + ++MI      GR++ A  +++  PV+        
Sbjct: 269 YSRDTSVLDTAIKFFESMIERNEYTWSTMIAALSHGGRIDAAIAVYERDPVKSIACRTAL 328

Query: 265 ----------DE-------------ISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWT 301
                     D+             +SW ++I GY+  G V+ A  LF  MP R+ ++W 
Sbjct: 329 ITGLAQCGRIDDARILFEQIPEPIVVSWNALITGYMQNGMVNEAKELFDKMPFRNTISWA 388

Query: 302 AMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKT 361
            MI+G  QN    EA  L  E+   G+ P  ++ + +F A      ++ G Q+H + +K 
Sbjct: 389 GMIAGYAQNGRSEEALGLLQELHRSGMLPSLSSLTSIFFACSNIVALETGTQVHSLAVKV 448

Query: 362 ESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVF 421
             + +    N LI+MY KC  ++ A  +FS MV++D+VSWNS +     + L +E    F
Sbjct: 449 GCQFNSFACNALITMYGKCRNMEYARQVFSRMVTKDIVSWNSFLAALVQNDLLDEARNTF 508

Query: 422 ESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGP 469
           ++ML      + V++  I+SA +HA   +     F  MF  +++   P
Sbjct: 509 DNMLSR----DDVSWTTIISAYAHAEQSNEAMGAFKTMFCEHELPNSP 552



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 105/404 (25%), Positives = 191/404 (47%), Gaps = 63/404 (15%)

Query: 3   ERNHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEAR 62
           ER+  KS+    T+ IT  ++ G ID+A+ LF+ +P+  VVS+NA+++G++QNG ++EA+
Sbjct: 315 ERDPVKSIACR-TALITGLAQCGRIDDARILFEQIPEPIVVSWNALITGYMQNGMVNEAK 373

Query: 63  RLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMP---------------------- 100
            LF++MP RN +SW  MI G A  GR  EA  L +E+                       
Sbjct: 374 ELFDKMPFRNTISWAGMIAGYAQNGRSEEALGLLQELHRSGMLPSLSSLTSIFFACSNIV 433

Query: 101 -----------------ERNVVSWNSMVV--GLIRNGELNEARKVFNSMPIKNVISWNAM 141
                            + N  + N+++   G  RN E   AR+VF+ M  K+++SWN+ 
Sbjct: 434 ALETGTQVHSLAVKVGCQFNSFACNALITMYGKCRNMEY--ARQVFSRMVTKDIVSWNSF 491

Query: 142 IAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRM------PRK 195
           +A  V+  ++ EA   F+ M  R+ V+WT++IS Y  A +  E    F+ M      P  
Sbjct: 492 LAALVQNDLLDEARNTFDNMLSRDDVSWTTIISAYAHAEQSNEAMGAFKTMFCEHELPNS 551

Query: 196 NVVS-WTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEA 254
            +++    + G    +   ++   + I++      G +  +   N++I+ Y + G   ++
Sbjct: 552 PILTILLGVCGSLGASKIGQQIHTVAIKL------GMDSELIVANALISMYFKCG-CADS 604

Query: 255 QNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDR----DAVAWTAMISGLVQN 310
           + +FD +  RD  +W ++I GY   G    A  ++ +M       + V +  +++     
Sbjct: 605 RRIFDLMEERDIFTWNTIITGYAQHGLGREAIKMYQHMESAGVLPNEVTFVGLLNACSHA 664

Query: 311 ELFVEATYLFMEM-RAHGVPPLNATFSVLFGAAGATANIDLGRQ 353
            L  E    F  M + +G+ PL   ++ +    G T ++    Q
Sbjct: 665 GLVDEGWKFFKSMSQDYGLTPLPEHYACMVDLLGRTGDVQGAEQ 708


>gi|255560453|ref|XP_002521241.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223539509|gb|EEF41097.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 662

 Score =  385 bits (989), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 211/613 (34%), Positives = 348/613 (56%), Gaps = 63/613 (10%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWT 77
           I+ +++ G I+EA+ALF  + +RN V++N+M+SG+++ G +++AR+LF+EMPER+VVSW 
Sbjct: 54  ISHFTRTGRINEARALFDKLERRNTVTWNSMISGYVKRGEMTKARKLFDEMPERDVVSWN 113

Query: 78  AMICGLADA-GR--VCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKN 134
            +I G     G+  + E R LF++MPER  VSWN+M+ G  +NG ++EA  +FN+MP KN
Sbjct: 114 LIISGYVSCRGKRFIEEGRNLFDKMPERCCVSWNTMISGYAKNGRMDEALGLFNTMPEKN 173

Query: 135 VISWNAMIAGYVECCMMGEAIVLFEEMEERNVVT-------------------------- 168
            +SWNAM++G+++   +  AI  F+ M ER+V +                          
Sbjct: 174 SVSWNAMVSGFLQNGDVVRAIEFFKRMPERDVTSLSALVSGLIQNSELDQAERILLDYGN 233

Query: 169 -----------WTSMISGYCRAGEVEEGYCLFRRMP-------------RKNVVSWTAMI 204
                      + ++I+GY + G V+E   LF ++P              +NVVSW  MI
Sbjct: 234 NGGSKEYLVHAYNTLIAGYGQRGRVDEAQNLFDKIPFYNDQGKGRTGRFERNVVSWNTMI 293

Query: 205 GGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVR 264
             +   G    +  LF +M        + +  S N+MI+GY+    +EEA NLF  +P  
Sbjct: 294 MCYVKAGDVISARKLFDQMP-------DRDSFSWNTMISGYVHVLDMEEASNLFHKMPSP 346

Query: 265 DEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMR 324
           D +SW  MI GY   G +  A+  F  MP ++ V+W ++I+G  +N  ++ A  LF++M+
Sbjct: 347 DTLSWNLMISGYAQSGSLELAHDFFERMPQKNLVSWNSVIAGYEKNGDYIGAINLFIQMQ 406

Query: 325 AHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVID 384
             G      T S L   +    ++ LG QIH ++ KT    D+ L N LI+MY++CG I 
Sbjct: 407 VEGEKSDRHTLSSLLSVSSGIVDLQLGMQIHQLVSKTVI-PDVPLNNALITMYSRCGAIF 465

Query: 385 NAYNIFSNM-VSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSAC 443
            A  IF  M + ++++SWN+M+ G++ HG A E L++F+ M      P  +TF+ +L+AC
Sbjct: 466 EARTIFYEMKLQKEVISWNAMIGGYASHGYATEALELFKLMRSFKVQPTYITFISVLNAC 525

Query: 444 SHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRI 503
           +HAGLV  G  +F +M   Y ++P  EH+ S+++++GR G+++EA + +  +  EPD  +
Sbjct: 526 AHAGLVEEGRRIFESMVSDYGVEPRVEHFASLVDIVGRQGQLEEALDLINSMTIEPDKAV 585

Query: 504 WGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMG 563
           WGALLGA      N E+A  AA+ L++L+P ++  +++L N+Y   G+     ++R  M 
Sbjct: 586 WGALLGASR-VHNNVEMARVAAEALMKLEPDSSVPYILLYNMYVDVGQWDNAAEIRSMME 644

Query: 564 LKGVRKVPGCSWL 576
              ++K    SW+
Sbjct: 645 RNNIKKEAAISWV 657



 Score =  214 bits (544), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 139/457 (30%), Positives = 227/457 (49%), Gaps = 63/457 (13%)

Query: 7   PKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFE 66
           P+   V   + I+ Y+K G +DEA  LF  MP++N VS+NAM+SGFLQNG +  A   F+
Sbjct: 139 PERCCVSWNTMISGYAKNGRMDEALGLFNTMPEKNSVSWNAMVSGFLQNGDVVRAIEFFK 198

Query: 67  EMPERNVVSWTAMICGL-------------------------------------ADAGRV 89
            MPER+V S +A++ GL                                        GRV
Sbjct: 199 RMPERDVTSLSALVSGLIQNSELDQAERILLDYGNNGGSKEYLVHAYNTLIAGYGQRGRV 258

Query: 90  CEARKLFEEMP-------------ERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVI 136
            EA+ LF+++P             ERNVVSWN+M++  ++ G++  ARK+F+ MP ++  
Sbjct: 259 DEAQNLFDKIPFYNDQGKGRTGRFERNVVSWNTMIMCYVKAGDVISARKLFDQMPDRDSF 318

Query: 137 SWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKN 196
           SWN MI+GYV    M EA  LF +M   + ++W  MISGY ++G +E  +  F RMP+KN
Sbjct: 319 SWNTMISGYVHVLDMEEASNLFHKMPSPDTLSWNLMISGYAQSGSLELAHDFFERMPQKN 378

Query: 197 VVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQN 256
           +VSW ++I G+  NG +  ++ LFI+M+   +  +   + S  S+ +G +      +   
Sbjct: 379 LVSWNSVIAGYEKNGDYIGAINLFIQMQVEGEKSDRHTLSSLLSVSSGIVDLQLGMQIHQ 438

Query: 257 LFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMP-DRDAVAWTAMISGLVQNELFVE 315
           L     + D     ++I  Y   G +  A  +F+ M   ++ ++W AMI G   +    E
Sbjct: 439 LVSKTVIPDVPLNNALITMYSRCGAIFEARTIFYEMKLQKEVISWNAMIGGYASHGYATE 498

Query: 316 ATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILE----- 370
           A  LF  MR+  V P   TF  +  A      ++ GR+I   ++     SD  +E     
Sbjct: 499 ALELFKLMRSFKVQPTYITFISVLNACAHAGLVEEGRRIFESMV-----SDYGVEPRVEH 553

Query: 371 -NCLISMYAKCGVIDNAYNIFSNM-VSRDLVSWNSMV 405
              L+ +  + G ++ A ++ ++M +  D   W +++
Sbjct: 554 FASLVDIVGRQGQLEEALDLINSMTIEPDKAVWGALL 590



 Score =  169 bits (427), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 104/345 (30%), Positives = 173/345 (50%), Gaps = 25/345 (7%)

Query: 129 SMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCL 188
           S+   N+ S N  I+ +     + EA  LF+++E RN VTW SMISGY + GE+ +   L
Sbjct: 41  SVEDSNLYSSNKKISHFTRTGRINEARALFDKLERRNTVTWNSMISGYVKRGEMTKARKL 100

Query: 189 FRRMPRKNVVSWTAMIGGFA---WNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGY 245
           F  MP ++VVSW  +I G+       F +E   LF +M   C     C   S N+MI+GY
Sbjct: 101 FDEMPERDVVSWNLIISGYVSCRGKRFIEEGRNLFDKMPERC-----C--VSWNTMISGY 153

Query: 246 IRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMIS 305
            + GR++EA  LF+T+P ++ +SW +M+ G+L  G V  A   F  MP+RD  + +A++S
Sbjct: 154 AKNGRMDEALGLFNTMPEKNSVSWNAMVSGFLQNGDVVRAIEFFKRMPERDVTSLSALVS 213

Query: 306 GLVQNELFVEATYLFMEMRAHGVPP--LNATFSVLFGAAGATANIDLGRQIHCVL----- 358
           GL+QN    +A  + ++   +G     L   ++ L    G    +D  + +   +     
Sbjct: 214 GLIQNSELDQAERILLDYGNNGGSKEYLVHAYNTLIAGYGQRGRVDEAQNLFDKIPFYND 273

Query: 359 ----MKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLA 414
                    E +++  N +I  Y K G + +A  +F  M  RD  SWN+M+ G+ H    
Sbjct: 274 QGKGRTGRFERNVVSWNTMIMCYVKAGDVISARKLFDQMPDRDSFSWNTMISGYVHVLDM 333

Query: 415 NETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAM 459
            E   +F  M      P+++++  ++S  + +G +    + F  M
Sbjct: 334 EEASNLFHKM----PSPDTLSWNLMISGYAQSGSLELAHDFFERM 374


>gi|449523934|ref|XP_004168978.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62260,
           mitochondrial-like [Cucumis sativus]
          Length = 664

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 206/608 (33%), Positives = 344/608 (56%), Gaps = 56/608 (9%)

Query: 14  LTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNV 73
           L   I+   + G I+EA+ LF      N +++N M++ +++   + +AR+LFEEMP R++
Sbjct: 60  LNKKISYLIRTGRINEARELFDSTEHWNTITWNRMITAYVKRREMLKARQLFEEMPNRDI 119

Query: 74  VSWTAMICGLADAGR--VCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMP 131
           VSW  M+ G    G   V  AR +F++MPE + VSWN+M+ G  ++G +++A ++FN MP
Sbjct: 120 VSWNLMLSGYISCGGKFVERARNMFDQMPETDCVSWNTMLSGYAKSGTMDKAEELFNEMP 179

Query: 132 IKNVISWNAMIAGYVECCMMGEAIVLFEEMEERN-------------------------- 165
            +NV+SWNAM++GY+    + +AI  F+ M +R+                          
Sbjct: 180 ERNVVSWNAMVSGYLMNGHVEKAIEFFKLMPKRDSASLRALVSGLIQNDKLVEAERILLQ 239

Query: 166 ----------VVTWTSMISGYCRAGEVEEGYCLFRRMP--------RKNVVSWTAMIGGF 207
                     V  + ++I+GY + G   E   LF R+P        R+NV+SW +MI  +
Sbjct: 240 YGGNVGKGDLVDAYNTLIAGYGQKGMAYEARKLFDRIPLCCDCGYSRRNVISWNSMIMCY 299

Query: 208 AWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEI 267
              G         +  + + D     +  S N+MI+GY++   ++EA NLF  +P  D +
Sbjct: 300 VRAGD-------IVSARELFDKMVERDTFSWNTMISGYVQILDMKEASNLFSRMPEPDTL 352

Query: 268 SWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHG 327
           SW  MI G+  +G +  A+ LF  +P++  V+W +MISG  +NE +  A  +F++M+  G
Sbjct: 353 SWNMMISGFSEIGSLKLAHDLFKRIPEKSLVSWNSMISGYEKNEDYKGAMNIFLQMQLEG 412

Query: 328 VPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAY 387
             P   T S +  A     ++ LG QIH ++ K    +DL + N L++MY++CG I  A 
Sbjct: 413 KKPDRHTLSSILSACAGLVDLVLGTQIHQLVTKAFI-ADLPINNSLVTMYSRCGAIVEAR 471

Query: 388 NIFSNM-VSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHA 446
            +F  M + RD++SWN+M+ G+++HG A E L++F+ M +    P+ +TF+ +L+AC+HA
Sbjct: 472 MVFDEMNLQRDVISWNAMIGGYAYHGFATEALQLFDLMKQCNVQPSYITFISVLNACAHA 531

Query: 447 GLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGA 506
           GL+  G   FN+M + + I+P  EHY ++++++GR G+++EA   +  +P EPD  +WGA
Sbjct: 532 GLIEEGRREFNSMVNTHGIKPQVEHYAALVDIIGRHGQLEEAMSLINSMPCEPDKAVWGA 591

Query: 507 LLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKG 566
           LLGAC     N E+A  AA+ L++L P ++  +V+L N+YA  GR  +  ++R  M    
Sbjct: 592 LLGACK-VHNNVEMARAAAEALMKLQPESSAPYVLLHNMYADVGRWDDAAEMRTMMEKNN 650

Query: 567 VRKVPGCS 574
           V+K  G S
Sbjct: 651 VQKDAGYS 658



 Score =  204 bits (518), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 155/537 (28%), Positives = 244/537 (45%), Gaps = 92/537 (17%)

Query: 21  YSKRGFIDEAKALF--QLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTA 78
           +S + F   A  +F  QL   R  V +N     F Q    S     F+ +PE    S   
Sbjct: 7   WSTKTFHAAALTVFNAQLQFHRRPVLFNIAFQ-FKQTCFSSSKANSFQ-VPE--FYSLNK 62

Query: 79  MICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISW 138
            I  L   GR+ EAR+LF+     N ++WN M+   ++  E+ +AR++F  MP ++++SW
Sbjct: 63  KISYLIRTGRINEARELFDSTEHWNTITWNRMITAYVKRREMLKARQLFEEMPNRDIVSW 122

Query: 139 NAMIAGYVECC--MMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKN 196
           N M++GY+ C    +  A  +F++M E + V+W +M+SGY ++G +++   LF  MP +N
Sbjct: 123 NLMLSGYISCGGKFVERARNMFDQMPETDCVSWNTMLSGYAKSGTMDKAEELFNEMPERN 182

Query: 197 VVSWTAMIGGFAWNGFHKESLLLFIEM-------------KGICDN-------------- 229
           VVSW AM+ G+  NG H E  + F ++              G+  N              
Sbjct: 183 VVSWNAMVSGYLMNG-HVEKAIEFFKLMPKRDSASLRALVSGLIQNDKLVEAERILLQYG 241

Query: 230 ---GNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPV--------RDEISWTSMIDGYLS 278
              G    V + N++I GY + G   EA+ LFD +P+        R+ ISW SMI  Y+ 
Sbjct: 242 GNVGKGDLVDAYNTLIAGYGQKGMAYEARKLFDRIPLCCDCGYSRRNVISWNSMIMCYVR 301

Query: 279 VGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVL 338
            G + +A  LF  M +RD  +W  MISG VQ     EA+ LF  M               
Sbjct: 302 AGDIVSARELFDKMVERDTFSWNTMISGYVQILDMKEASNLFSRM--------------- 346

Query: 339 FGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDL 398
                                    E D +  N +IS +++ G +  A+++F  +  + L
Sbjct: 347 ------------------------PEPDTLSWNMMISGFSEIGSLKLAHDLFKRIPEKSL 382

Query: 399 VSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVS--RGWELF 456
           VSWNSM+ G+  +      + +F  M   G  P+  T   ILSAC  AGLV    G ++ 
Sbjct: 383 VSWNSMISGYEKNEDYKGAMNIFLQMQLEGKKPDRHTLSSILSAC--AGLVDLVLGTQIH 440

Query: 457 NAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGF 513
             +   + I   P +  S++ +  R G I EA      +  + D   W A++G   +
Sbjct: 441 QLVTKAF-IADLPINN-SLVTMYSRCGAIVEARMVFDEMNLQRDVISWNAMIGGYAY 495



 Score =  197 bits (500), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 124/392 (31%), Positives = 195/392 (49%), Gaps = 45/392 (11%)

Query: 7   PKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFE 66
           P++  V   + ++ Y+K G +D+A+ LF  MP+RNVVS+NAM+SG+L NG + +A   F+
Sbjct: 148 PETDCVSWNTMLSGYAKSGTMDKAEELFNEMPERNVVSWNAMVSGYLMNGHVEKAIEFFK 207

Query: 67  EMPERNVVSWTAMICG-------------------------LADA-----------GRVC 90
            MP+R+  S  A++ G                         L DA           G   
Sbjct: 208 LMPKRDSASLRALVSGLIQNDKLVEAERILLQYGGNVGKGDLVDAYNTLIAGYGQKGMAY 267

Query: 91  EARKLFEEMP--------ERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMI 142
           EARKLF+ +P         RNV+SWNSM++  +R G++  AR++F+ M  ++  SWN MI
Sbjct: 268 EARKLFDRIPLCCDCGYSRRNVISWNSMIMCYVRAGDIVSARELFDKMVERDTFSWNTMI 327

Query: 143 AGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTA 202
           +GYV+   M EA  LF  M E + ++W  MISG+   G ++  + LF+R+P K++VSW +
Sbjct: 328 SGYVQILDMKEASNLFSRMPEPDTLSWNMMISGFSEIGSLKLAHDLFKRIPEKSLVSWNS 387

Query: 203 MIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVP 262
           MI G+  N  +K ++ +F++M+      +   + S  S   G +      +   L     
Sbjct: 388 MISGYEKNEDYKGAMNIFLQMQLEGKKPDRHTLSSILSACAGLVDLVLGTQIHQLVTKAF 447

Query: 263 VRDEISWTSMIDGYLSVGQVSNAYYLFHNMP-DRDAVAWTAMISGLVQNELFVEATYLFM 321
           + D     S++  Y   G +  A  +F  M   RD ++W AMI G   +    EA  LF 
Sbjct: 448 IADLPINNSLVTMYSRCGAIVEARMVFDEMNLQRDVISWNAMIGGYAYHGFATEALQLFD 507

Query: 322 EMRAHGVPPLNATFSVLFGAAGATANIDLGRQ 353
            M+   V P   TF  +  A      I+ GR+
Sbjct: 508 LMKQCNVQPSYITFISVLNACAHAGLIEEGRR 539



 Score =  142 bits (358), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 111/396 (28%), Positives = 183/396 (46%), Gaps = 65/396 (16%)

Query: 11  VVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPE 70
           V+   S I  Y + G I  A+ LF  M +R+  S+N M+SG++Q   + EA  LF  MPE
Sbjct: 289 VISWNSMIMCYVRAGDIVSARELFDKMVERDTFSWNTMISGYVQILDMKEASNLFSRMPE 348

Query: 71  RNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSM 130
            + +SW  MI G ++ G +  A  LF+ +PE+++VSWNSM+ G  +N +   A  +F  M
Sbjct: 349 PDTLSWNMMISGFSEIGSLKLAHDLFKRIPEKSLVSWNSMISGYEKNEDYKGAMNIFLQM 408

Query: 131 PIKNVISWNAMIAGYVECCMMGEAIVLFEEMEE-------RNVVTWTSMISGYCRAGEVE 183
            ++        ++  +  C     +VL  ++ +        ++    S+++ Y R G + 
Sbjct: 409 QLEGKKPDRHTLSSILSACAGLVDLVLGTQIHQLVTKAFIADLPINNSLVTMYSRCGAIV 468

Query: 184 EGYCLFRRMP-RKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCN--- 239
           E   +F  M  +++V+SW AMIGG+A++GF  E+L LF  MK        CNVQ      
Sbjct: 469 EARMVFDEMNLQRDVISWNAMIGGYAYHGFATEALQLFDLMK-------QCNVQPSYITF 521

Query: 240 -SMINGYIRFGRLEEAQNLF----DTVPVRDEIS-WTSMIDGYLSVGQVSNAYYLFHNMP 293
            S++N     G +EE +  F    +T  ++ ++  + +++D     GQ+  A  L ++MP
Sbjct: 522 ISVLNACAHAGLIEEGRREFNSMVNTHGIKPQVEHYAALVDIIGRHGQLEEAMSLINSMP 581

Query: 294 DRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQ 353
                                               P  A +  L GA     N+++ R 
Sbjct: 582 ----------------------------------CEPDKAVWGALLGACKVHNNVEMARA 607

Query: 354 IHCVLMKTESESD---LILENCLISMYAKCGVIDNA 386
               LMK + ES    ++L N    MYA  G  D+A
Sbjct: 608 AAEALMKLQPESSAPYVLLHN----MYADVGRWDDA 639


>gi|449454362|ref|XP_004144924.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62260,
           mitochondrial-like [Cucumis sativus]
          Length = 664

 Score =  383 bits (984), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 206/608 (33%), Positives = 344/608 (56%), Gaps = 56/608 (9%)

Query: 14  LTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNV 73
           L   I+   + G I+EA+ LF      N +++N M++ +++   + +AR+LFEEMP R++
Sbjct: 60  LNKKISYLIRTGRINEARELFDSTEHWNTITWNRMITAYVKRREMLKARQLFEEMPNRDI 119

Query: 74  VSWTAMICGLADAGR--VCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMP 131
           VSW  M+ G    G   V  AR +F++MPE + VSWN+M+ G  ++G +++A ++FN MP
Sbjct: 120 VSWNLMLSGYISCGGKFVERARNMFDQMPETDCVSWNTMLSGYAKSGMMDKAEELFNEMP 179

Query: 132 IKNVISWNAMIAGYVECCMMGEAIVLFEEMEERN-------------------------- 165
            +NV+SWNAM++GY+    + +AI  F+ M +R+                          
Sbjct: 180 ERNVVSWNAMVSGYLMNGHVEKAIEFFKLMPKRDSASLRALISGLIQNDKLVEAERILLQ 239

Query: 166 ----------VVTWTSMISGYCRAGEVEEGYCLFRRMP--------RKNVVSWTAMIGGF 207
                     V  + ++I+GY + G   E   LF R+P        R+NV+SW +MI  +
Sbjct: 240 YGGNVGKGDLVDAYNTLIAGYGQKGMAYEARKLFDRIPLCCDCGYSRRNVISWNSMIMCY 299

Query: 208 AWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEI 267
              G         +  + + D     +  S N+MI+GY++   ++EA NLF  +P  D +
Sbjct: 300 VRAGD-------IVSARELFDKMVERDTFSWNTMISGYVQILDMKEASNLFSRMPEPDTL 352

Query: 268 SWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHG 327
           SW  MI G+  +G +  A+ LF  +P++  V+W +MISG  +NE +  A  +F++M+  G
Sbjct: 353 SWNMMISGFSEIGSLKLAHDLFKRIPEKSLVSWNSMISGYEKNEDYKGAMNIFLQMQLEG 412

Query: 328 VPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAY 387
             P   T S +  A     ++ LG QIH ++ K    +DL + N L++MY++CG I  A 
Sbjct: 413 KKPDRHTLSSILSACAGLVDLVLGTQIHQLVTKAFI-ADLPINNSLVTMYSRCGAIVEAR 471

Query: 388 NIFSNM-VSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHA 446
            +F  M + RD++SWN+M+ G+++HG A E L++F+ M +    P+ +TF+ +L+AC+HA
Sbjct: 472 MVFDEMNLQRDVISWNAMIGGYAYHGFATEALQLFDLMKQCNVQPSYITFISVLNACAHA 531

Query: 447 GLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGA 506
           GL+  G   FN+M + + I+P  EHY ++++++GR G+++EA   +  +P EPD  +WGA
Sbjct: 532 GLIEEGRREFNSMVNTHGIKPQVEHYAALVDIIGRHGQLEEAMSLINSMPCEPDKAVWGA 591

Query: 507 LLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKG 566
           LLGAC     N E+A  AA+ L++L P ++  +V+L N+YA  GR  +  ++R  M    
Sbjct: 592 LLGACK-VHNNVEMARAAAEALMKLQPESSAPYVLLHNMYADVGRWDDAAEMRTMMEKNN 650

Query: 567 VRKVPGCS 574
           V+K  G S
Sbjct: 651 VQKDAGYS 658



 Score =  204 bits (518), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 155/537 (28%), Positives = 245/537 (45%), Gaps = 92/537 (17%)

Query: 21  YSKRGFIDEAKALF--QLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTA 78
           +S + F   A  +F  QL   R  V +N +   F Q    S     F+ +PE    S   
Sbjct: 7   WSTKTFHAAALTVFNAQLQFHRRPVLFNIVFQ-FKQTCFSSSKANSFQ-VPE--FYSLNK 62

Query: 79  MICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISW 138
            I  L   GR+ EAR+LF+     N ++WN M+   ++  E+ +AR++F  MP ++++SW
Sbjct: 63  KISYLIRTGRINEARELFDSTEHWNTITWNRMITAYVKRREMLKARQLFEEMPNRDIVSW 122

Query: 139 NAMIAGYVECC--MMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKN 196
           N M++GY+ C    +  A  +F++M E + V+W +M+SGY ++G +++   LF  MP +N
Sbjct: 123 NLMLSGYISCGGKFVERARNMFDQMPETDCVSWNTMLSGYAKSGMMDKAEELFNEMPERN 182

Query: 197 VVSWTAMIGGFAWNGFHKESLLLFIEM-------------KGICDN-------------- 229
           VVSW AM+ G+  NG H E  + F ++              G+  N              
Sbjct: 183 VVSWNAMVSGYLMNG-HVEKAIEFFKLMPKRDSASLRALISGLIQNDKLVEAERILLQYG 241

Query: 230 ---GNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPV--------RDEISWTSMIDGYLS 278
              G    V + N++I GY + G   EA+ LFD +P+        R+ ISW SMI  Y+ 
Sbjct: 242 GNVGKGDLVDAYNTLIAGYGQKGMAYEARKLFDRIPLCCDCGYSRRNVISWNSMIMCYVR 301

Query: 279 VGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVL 338
            G + +A  LF  M +RD  +W  MISG VQ     EA+ LF  M               
Sbjct: 302 AGDIVSARELFDKMVERDTFSWNTMISGYVQILDMKEASNLFSRM--------------- 346

Query: 339 FGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDL 398
                                    E D +  N +IS +++ G +  A+++F  +  + L
Sbjct: 347 ------------------------PEPDTLSWNMMISGFSEIGSLKLAHDLFKRIPEKSL 382

Query: 399 VSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVS--RGWELF 456
           VSWNSM+ G+  +      + +F  M   G  P+  T   ILSAC  AGLV    G ++ 
Sbjct: 383 VSWNSMISGYEKNEDYKGAMNIFLQMQLEGKKPDRHTLSSILSAC--AGLVDLVLGTQIH 440

Query: 457 NAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGF 513
             +   + I   P +  S++ +  R G I EA      +  + D   W A++G   +
Sbjct: 441 QLVTKAF-IADLPINN-SLVTMYSRCGAIVEARMVFDEMNLQRDVISWNAMIGGYAY 495



 Score =  198 bits (504), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 125/392 (31%), Positives = 195/392 (49%), Gaps = 45/392 (11%)

Query: 7   PKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFE 66
           P++  V   + ++ Y+K G +D+A+ LF  MP+RNVVS+NAM+SG+L NG + +A   F+
Sbjct: 148 PETDCVSWNTMLSGYAKSGMMDKAEELFNEMPERNVVSWNAMVSGYLMNGHVEKAIEFFK 207

Query: 67  EMPERNVVSWTAMICG-------------------------LADA-----------GRVC 90
            MP+R+  S  A+I G                         L DA           G   
Sbjct: 208 LMPKRDSASLRALISGLIQNDKLVEAERILLQYGGNVGKGDLVDAYNTLIAGYGQKGMAY 267

Query: 91  EARKLFEEMP--------ERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMI 142
           EARKLF+ +P         RNV+SWNSM++  +R G++  AR++F+ M  ++  SWN MI
Sbjct: 268 EARKLFDRIPLCCDCGYSRRNVISWNSMIMCYVRAGDIVSARELFDKMVERDTFSWNTMI 327

Query: 143 AGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTA 202
           +GYV+   M EA  LF  M E + ++W  MISG+   G ++  + LF+R+P K++VSW +
Sbjct: 328 SGYVQILDMKEASNLFSRMPEPDTLSWNMMISGFSEIGSLKLAHDLFKRIPEKSLVSWNS 387

Query: 203 MIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVP 262
           MI G+  N  +K ++ +F++M+      +   + S  S   G +      +   L     
Sbjct: 388 MISGYEKNEDYKGAMNIFLQMQLEGKKPDRHTLSSILSACAGLVDLVLGTQIHQLVTKAF 447

Query: 263 VRDEISWTSMIDGYLSVGQVSNAYYLFHNMP-DRDAVAWTAMISGLVQNELFVEATYLFM 321
           + D     S++  Y   G +  A  +F  M   RD ++W AMI G   +    EA  LF 
Sbjct: 448 IADLPINNSLVTMYSRCGAIVEARMVFDEMNLQRDVISWNAMIGGYAYHGFATEALQLFD 507

Query: 322 EMRAHGVPPLNATFSVLFGAAGATANIDLGRQ 353
            M+   V P   TF  +  A      I+ GR+
Sbjct: 508 LMKQCNVQPSYITFISVLNACAHAGLIEEGRR 539



 Score =  142 bits (358), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 111/396 (28%), Positives = 183/396 (46%), Gaps = 65/396 (16%)

Query: 11  VVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPE 70
           V+   S I  Y + G I  A+ LF  M +R+  S+N M+SG++Q   + EA  LF  MPE
Sbjct: 289 VISWNSMIMCYVRAGDIVSARELFDKMVERDTFSWNTMISGYVQILDMKEASNLFSRMPE 348

Query: 71  RNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSM 130
            + +SW  MI G ++ G +  A  LF+ +PE+++VSWNSM+ G  +N +   A  +F  M
Sbjct: 349 PDTLSWNMMISGFSEIGSLKLAHDLFKRIPEKSLVSWNSMISGYEKNEDYKGAMNIFLQM 408

Query: 131 PIKNVISWNAMIAGYVECCMMGEAIVLFEEMEE-------RNVVTWTSMISGYCRAGEVE 183
            ++        ++  +  C     +VL  ++ +        ++    S+++ Y R G + 
Sbjct: 409 QLEGKKPDRHTLSSILSACAGLVDLVLGTQIHQLVTKAFIADLPINNSLVTMYSRCGAIV 468

Query: 184 EGYCLFRRMP-RKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCN--- 239
           E   +F  M  +++V+SW AMIGG+A++GF  E+L LF  MK        CNVQ      
Sbjct: 469 EARMVFDEMNLQRDVISWNAMIGGYAYHGFATEALQLFDLMK-------QCNVQPSYITF 521

Query: 240 -SMINGYIRFGRLEEAQNLF----DTVPVRDEIS-WTSMIDGYLSVGQVSNAYYLFHNMP 293
            S++N     G +EE +  F    +T  ++ ++  + +++D     GQ+  A  L ++MP
Sbjct: 522 ISVLNACAHAGLIEEGRREFNSMVNTHGIKPQVEHYAALVDIIGRHGQLEEAMSLINSMP 581

Query: 294 DRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQ 353
                                               P  A +  L GA     N+++ R 
Sbjct: 582 ----------------------------------CEPDKAVWGALLGACKVHNNVEMARA 607

Query: 354 IHCVLMKTESESD---LILENCLISMYAKCGVIDNA 386
               LMK + ES    ++L N    MYA  G  D+A
Sbjct: 608 AAEALMKLQPESSAPYVLLHN----MYADVGRWDDA 639


>gi|296090396|emb|CBI40215.3| unnamed protein product [Vitis vinifera]
          Length = 653

 Score =  382 bits (982), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 214/571 (37%), Positives = 321/571 (56%), Gaps = 46/571 (8%)

Query: 7   PKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFE 66
           P++ +    + I +  + G ++EA+ +F  M QR+VVS+N+M++G+ QNG++ EAR LF+
Sbjct: 35  PQTHLFQCNTRIQELGRLGRVEEARRVFNEMIQRDVVSWNSMINGYSQNGKVDEARLLFD 94

Query: 67  EMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKV 126
               +N+ +WT ++ G A  GR+ EAR++FE M ERNVVSWN+M+ G ++NG+L  ARK+
Sbjct: 95  AFVGKNIRTWTILLTGYAKEGRIEEAREVFESMTERNVVSWNAMISGYVQNGDLKNARKL 154

Query: 127 FNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGY---------- 176
           F+ MP KNV SWN+++ GY  C  M EA  LF++M ERN V+W  MISGY          
Sbjct: 155 FDEMPEKNVASWNSVVTGYCHCYRMSEARELFDQMPERNSVSWMVMISGYVHISDYWEAW 214

Query: 177 ------CRA----------------GEVEEGYCLFRRMPRK-NVVSWTAMIGGFAWNGFH 213
                 CR                 G +++   L+ R+P + N  SW AMI GF  N   
Sbjct: 215 DVFVKMCRTRNEYSWTTMIAAFAQCGRLDDAIQLYERVPEQTNSASWAAMIAGFVQNEES 274

Query: 214 KESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTS-- 271
           +E+L L IE+     +G+  +  S  S ++     G +E  + +  ++ ++    + S  
Sbjct: 275 REALELLIELH---RSGSVPSDSSFTSALSACANIGDVEIGR-VIHSLAIKTGCQFNSYV 330

Query: 272 ---MIDGYLSVGQVSNAYYLFHN--MPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAH 326
              +I  Y   G V +  ++F    MP RD V+WTA+IS  VQ      A  LF++M A 
Sbjct: 331 MNGLISMYAKCGNVEDGSHVFRTIRMPKRDVVSWTAIISAYVQAGHGEVALDLFLDMLAR 390

Query: 327 GVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNA 386
           G+ P   T + L  A G    I LG Q H ++ K   ++ L + N LI+MY KCG  ++ 
Sbjct: 391 GIKPNQLTVTSLLSACGNLGAIKLGEQFHALIFKLGFDTFLFVGNSLITMYFKCGY-EDG 449

Query: 387 YNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHA 446
           + +F  M   DL++WN++++G + +GL  E +K+FE M   G  P+ ++FLG+L ACSHA
Sbjct: 450 FCVFEEMPEHDLITWNAVLVGCAQNGLGKEAIKIFEQMEVEGILPDQMSFLGVLCACSHA 509

Query: 447 GLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGA 506
           GLV  GW  FN+M   Y I P   HY  M++LLGRAG + EAE  +  +P +PD  IW A
Sbjct: 510 GLVDEGWAHFNSMTQKYGIMPLVYHYTCMVDLLGRAGYLSEAEALIENMPVKPDSVIWEA 569

Query: 507 LLGACGFCEGNAEIAEHAAKRLLELDPLNAP 537
           LLGAC     N E+  H+ K  +    L+ P
Sbjct: 570 LLGACRIHRNN-ELLYHSEKLAVVFGILSTP 599



 Score =  262 bits (670), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 160/484 (33%), Positives = 254/484 (52%), Gaps = 49/484 (10%)

Query: 35  QLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARK 94
           Q  PQ ++   N  +    + GR+ EARR+F EM +R+VVSW +MI G +  G+V EAR 
Sbjct: 32  QETPQTHLFQCNTRIQELGRLGRVEEARRVFNEMIQRDVVSWNSMINGYSQNGKVDEARL 91

Query: 95  LFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEA 154
           LF+    +N+ +W  ++ G  + G + EAR+VF SM  +NV+SWNAMI+GYV+   +  A
Sbjct: 92  LFDAFVGKNIRTWTILLTGYAKEGRIEEAREVFESMTERNVVSWNAMISGYVQNGDLKNA 151

Query: 155 IVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHK 214
             LF+EM E+NV +W S+++GYC    + E   LF +MP +N VSW  MI G+     + 
Sbjct: 152 RKLFDEMPEKNVASWNSVVTGYCHCYRMSEARELFDQMPERNSVSWMVMISGYVHISDYW 211

Query: 215 ESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMID 274
           E+  +F++M   C   N     S  +MI  + + GRL++A  L++ VP            
Sbjct: 212 EAWDVFVKM---CRTRNE---YSWTTMIAAFAQCGRLDDAIQLYERVP------------ 253

Query: 275 GYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNAT 334
                                ++ +W AMI+G VQNE   EA  L +E+   G  P +++
Sbjct: 254 ------------------EQTNSASWAAMIAGFVQNEESREALELLIELHRSGSVPSDSS 295

Query: 335 FSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSN-- 392
           F+    A     ++++GR IH + +KT  + +  + N LISMYAKCG +++  ++F    
Sbjct: 296 FTSALSACANIGDVEIGRVIHSLAIKTGCQFNSYVMNGLISMYAKCGNVEDGSHVFRTIR 355

Query: 393 MVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRG 452
           M  RD+VSW +++  +   G     L +F  ML  G  PN +T   +LSAC + G +  G
Sbjct: 356 MPKRDVVSWTAIISAYVQAGHGEVALDLFLDMLARGIKPNQLTVTSLLSACGNLGAIKLG 415

Query: 453 WELFNAMFDVYKIQPGPEHYV--SMINLLGRAGKIKEAEEFVLRLPFEPDHRI--WGALL 508
            E F+A+  ++K+      +V  S+I +  + G     E+        P+H +  W A+L
Sbjct: 416 -EQFHAL--IFKLGFDTFLFVGNSLITMYFKCGY----EDGFCVFEEMPEHDLITWNAVL 468

Query: 509 GACG 512
             C 
Sbjct: 469 VGCA 472


>gi|413946157|gb|AFW78806.1| hypothetical protein ZEAMMB73_634908 [Zea mays]
          Length = 1145

 Score =  380 bits (977), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 220/664 (33%), Positives = 345/664 (51%), Gaps = 74/664 (11%)

Query: 7   PKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFL---QNGRLSEARR 63
           P   V    + +T Y     ++EA+ LF+ MP+RN VS+  M+SG++   Q+GR  +  R
Sbjct: 153 PSRDVSSWNTMLTGYCHSQLMEEARNLFERMPERNGVSWTVMISGYVLIEQHGRAWDMFR 212

Query: 64  ------LFEEMP------------------------------ERNVVSWTAMICGLA-DA 86
                 +  E P                              ER+VV  TA++ G   D 
Sbjct: 213 TMLCEGMTPEQPNLVSVLSAVRHLGKPGILESIHVLVHKTGFERDVVVGTAILNGYTKDV 272

Query: 87  GRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYV 146
             +  A K FE M  RN  +W++++  L + G +++A  V+   P+K+V S  +M+ G  
Sbjct: 273 NMLDSAVKFFEGMAARNEYTWSTIIAALSQAGRIDDAFAVYQRDPLKSVPSRTSMLTGLA 332

Query: 147 ECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGG 206
               + +A +LF+++ E NVV+W +MI+GY +   V+E   LF RMP +N +SW  MI G
Sbjct: 333 RYGRIDDAKILFDQIHEPNVVSWNAMITGYMQNEMVDEAEDLFNRMPFRNTISWAGMIAG 392

Query: 207 FAWNGFHKESL--LLFIEMKGI-------------CDN-----------------GNNCN 234
           +A NG  +++L  L  +  KG+             C N                 G   N
Sbjct: 393 YARNGRSEQALVSLQALHRKGMLPSLSSLTSSFFACSNIEALETGKQVHSLAVKAGCQFN 452

Query: 235 VQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPD 294
              CN++I  Y ++  +   + +FD + V+D +S+ S +   +       A  +F+NMP 
Sbjct: 453 SYVCNALITLYGKYRSIGSVRQIFDRMTVKDTVSYNSFMSALVQNNLFDEARDVFNNMPS 512

Query: 295 RDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQI 354
            D V+WT +IS   Q +   EA  +F  M      P     ++L G +G      LG+QI
Sbjct: 513 PDVVSWTTIISACAQADQGNEAVEIFRSMLHERELPNPPILTILLGLSGNLGAPQLGQQI 572

Query: 355 HCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLA 414
           H + +K   +S L++ N L+SMY KC   D +  +F +M  RD+ +WN+++ G++ HGL 
Sbjct: 573 HTIAIKLGMDSGLVVANALVSMYFKCSSAD-SLKVFDSMEERDIFTWNTIITGYAQHGLG 631

Query: 415 NETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVS 474
            E +++++ M+ +G  PN VTF+G+L ACSH+GLV  G + F +M   Y + P  EHY  
Sbjct: 632 REAIRMYQLMVSAGVLPNEVTFVGLLHACSHSGLVDEGHQFFKSMSSDYGLTPLLEHYAC 691

Query: 475 MINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPL 534
           M++LLGRAG ++ AE F+  +P EPD  IW ALLGAC     N EI   AA++L  ++P 
Sbjct: 692 MVDLLGRAGDVQGAEHFIYDMPIEPDSVIWSALLGACKI-HKNVEIGRRAAEKLFSIEPS 750

Query: 535 NAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQ 594
           NA  +V+L NIY++ G   E  K+R  M  +GV K PGCSW+     +  F++GD+   Q
Sbjct: 751 NAGNYVMLSNIYSSQGMWDEVAKVRKLMKERGVNKDPGCSWMQIKNKMHSFVTGDEEHEQ 810

Query: 595 VAEI 598
           +  I
Sbjct: 811 IQNI 814



 Score =  233 bits (595), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 152/533 (28%), Positives = 259/533 (48%), Gaps = 69/533 (12%)

Query: 15  TSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVV 74
           ++ I +  + G + EA+ +F  MP R+++++N+M+  +  NG     R L + +   N+ 
Sbjct: 37  SARIRELGRLGRLHEAREVFDSMPFRDIIAWNSMIFAYCNNGMPDAGRSLADAISGGNLR 96

Query: 75  SWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKN 134
           + T ++ G A AGRV +AR++F+ M  RN V+WN+MV   ++NG++  ARK+F++MP ++
Sbjct: 97  TGTILLSGYARAGRVRDARRVFDGMGVRNTVAWNAMVTCYVQNGDITLARKLFDAMPSRD 156

Query: 135 VISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRM-- 192
           V SWN M+ GY    +M EA  LFE M ERN V+WT MISGY    +    + +FR M  
Sbjct: 157 VSSWNTMLTGYCHSQLMEEARNLFERMPERNGVSWTVMISGYVLIEQHGRAWDMFRTMLC 216

Query: 193 ----P---------------------------------RKNVVSWTAMIGGF-------- 207
               P                                  ++VV  TA++ G+        
Sbjct: 217 EGMTPEQPNLVSVLSAVRHLGKPGILESIHVLVHKTGFERDVVVGTAILNGYTKDVNMLD 276

Query: 208 ----------AWNGFHKESLLLFIEMKGICDNGNNC-------NVQSCNSMINGYIRFGR 250
                     A N +   +++  +   G  D+           +V S  SM+ G  R+GR
Sbjct: 277 SAVKFFEGMAARNEYTWSTIIAALSQAGRIDDAFAVYQRDPLKSVPSRTSMLTGLARYGR 336

Query: 251 LEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQN 310
           +++A+ LFD +   + +SW +MI GY+    V  A  LF+ MP R+ ++W  MI+G  +N
Sbjct: 337 IDDAKILFDQIHEPNVVSWNAMITGYMQNEMVDEAEDLFNRMPFRNTISWAGMIAGYARN 396

Query: 311 ELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILE 370
               +A      +   G+ P  ++ +  F A      ++ G+Q+H + +K   + +  + 
Sbjct: 397 GRSEQALVSLQALHRKGMLPSLSSLTSSFFACSNIEALETGKQVHSLAVKAGCQFNSYVC 456

Query: 371 NCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTH 430
           N LI++Y K   I +   IF  M  +D VS+NS +     + L +E   VF +M      
Sbjct: 457 NALITLYGKYRSIGSVRQIFDRMTVKDTVSYNSFMSALVQNNLFDEARDVFNNM----PS 512

Query: 431 PNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAG 483
           P+ V++  I+SAC+ A   +   E+F +M    ++ P P     ++ L G  G
Sbjct: 513 PDVVSWTTIISACAQADQGNEAVEIFRSMLHEREL-PNPPILTILLGLSGNLG 564



 Score = 41.2 bits (95), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 44/196 (22%), Positives = 86/196 (43%), Gaps = 24/196 (12%)

Query: 370 ENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGT 429
           ++  I    + G +  A  +F +M  RD+++WNSM+  + ++G+ +    + +++  SG 
Sbjct: 36  QSARIRELGRLGRLHEAREVFDSMPFRDIIAWNSMIFAYCNNGMPDAGRSLADAI--SGG 93

Query: 430 HPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYV---SMINLLGRAGKIK 486
           +  + T L  LS  + AG V     +F+ M        G  + V   +M+    + G I 
Sbjct: 94  NLRTGTIL--LSGYARAGRVRDARRVFDGM--------GVRNTVAWNAMVTCYVQNGDIT 143

Query: 487 EAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIY 546
            A +    +P   D   W  +L   G+C  ++++ E A      +   N  +  V+ + Y
Sbjct: 144 LARKLFDAMPSR-DVSSWNTML--TGYC--HSQLMEEARNLFERMPERNGVSWTVMISGY 198

Query: 547 AASGRHVEEHKLRMDM 562
                 +E+H    DM
Sbjct: 199 VL----IEQHGRAWDM 210


>gi|224103137|ref|XP_002312939.1| predicted protein [Populus trichocarpa]
 gi|222849347|gb|EEE86894.1| predicted protein [Populus trichocarpa]
          Length = 610

 Score =  380 bits (976), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 207/618 (33%), Positives = 341/618 (55%), Gaps = 69/618 (11%)

Query: 16  SSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVS 75
             I+  +K G IDEA+ALF  M + N VS+NA++  +++   +++AR+LF+EMP+R++VS
Sbjct: 2   KKISNLAKNGRIDEARALFDQMEETNTVSWNAIIRAYVKRREIAKARKLFDEMPQRDIVS 61

Query: 76  WTAMICGLADAGRV---CEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPI 132
           W  MI G      +    E R LF+ MPER++VSWN+M+ G  +NG ++EA ++F  MP 
Sbjct: 62  WNLMISGYVSCHGIRFLKEGRNLFDRMPERDIVSWNTMISGYAKNGRMDEALRMFKLMPE 121

Query: 133 KNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEE-------- 184
            +V+SWNA++ G+++   +  AI  FE M ER+  + ++++SG  R GE++E        
Sbjct: 122 GDVVSWNAIVTGFLQNGDVARAIEYFERMPERDAASLSALVSGLIRNGELDEAARVVVRF 181

Query: 185 -------------------GYC----------LFRRMP-------------RKNVVSWTA 202
                              GY           LF ++P              +NVVSW  
Sbjct: 182 ERDGGRKENLLQAYNTLIAGYGRRDRVDEARKLFDQIPFCDGKGKGGDGRFGRNVVSWNT 241

Query: 203 MIGGFAWNG---FHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFD 259
           MI  +   G   F +E     +E   I          S N+MI+GY+    ++EA  LF 
Sbjct: 242 MIMCYVKAGNIVFARELFDQMMERDTI----------SWNTMISGYVNMLDMDEASRLFC 291

Query: 260 TVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYL 319
            +P  D  SW  MI G+  +G +     LF  MP ++ V+W ++I+G  +N+ ++ A  +
Sbjct: 292 EMPNPDIFSWNKMIAGHAQIGDLDRVNDLFGRMPQKNLVSWNSVITGYEKNDDYIGAIKI 351

Query: 320 FMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAK 379
           F++M+  G  P   T S +   +    ++ LG QIH ++ KT    D+ + N LI+MY++
Sbjct: 352 FIQMQVEGEKPDRHTLSSVLSVSAGIVDLQLGMQIHQLVTKTVI-PDVPINNALITMYSR 410

Query: 380 CGVIDNAYNIFSNM-VSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLG 438
           CG I  A  IF  + + ++++SWN+M+ G++ HG A E L+VF+ M      P  +TF+ 
Sbjct: 411 CGAIIEAGTIFDEVKLQKEVISWNAMIGGYASHGYAVEALEVFKLMKSFDVRPTHITFIS 470

Query: 439 ILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFE 498
           +L AC+HAGLV  G E+F +M D + I+P  EHY S+++++ R G++++A + +  +PFE
Sbjct: 471 VLHACAHAGLVEEGREIFESMADEFGIEPSVEHYASLVDIMSRHGQLEQALDLINSMPFE 530

Query: 499 PDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKL 558
           PD  +WGALL A        E+A  AA+ L+ L+P ++  +V+L N+YA  G+     ++
Sbjct: 531 PDKAVWGALLSAAK-VHNKIEVARVAAEALIRLEPDSSAPYVLLYNMYADVGQWDSAAEV 589

Query: 559 RMDMGLKGVRKVPGCSWL 576
           R+ M    ++K    SW+
Sbjct: 590 RIMMERSNIKKQAAYSWV 607



 Score =  196 bits (499), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 133/459 (28%), Positives = 229/459 (49%), Gaps = 55/459 (11%)

Query: 7   PKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFE 66
           P+  +V   + I+ Y+K G +DEA  +F+LMP+ +VVS+NA+++GFLQNG ++ A   FE
Sbjct: 89  PERDIVSWNTMISGYAKNGRMDEALRMFKLMPEGDVVSWNAIVTGFLQNGDVARAIEYFE 148

Query: 67  EMPERNVVSWTAMICGLADAG-------------------------------------RV 89
            MPER+  S +A++ GL   G                                     RV
Sbjct: 149 RMPERDAASLSALVSGLIRNGELDEAARVVVRFERDGGRKENLLQAYNTLIAGYGRRDRV 208

Query: 90  CEARKLFEEMP-------------ERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVI 136
            EARKLF+++P              RNVVSWN+M++  ++ G +  AR++F+ M  ++ I
Sbjct: 209 DEARKLFDQIPFCDGKGKGGDGRFGRNVVSWNTMIMCYVKAGNIVFARELFDQMMERDTI 268

Query: 137 SWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKN 196
           SWN MI+GYV    M EA  LF EM   ++ +W  MI+G+ + G+++    LF RMP+KN
Sbjct: 269 SWNTMISGYVNMLDMDEASRLFCEMPNPDIFSWNKMIAGHAQIGDLDRVNDLFGRMPQKN 328

Query: 197 VVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQN 256
           +VSW ++I G+  N  +  ++ +FI+M+   +  +   + S  S+  G +      +   
Sbjct: 329 LVSWNSVITGYEKNDDYIGAIKIFIQMQVEGEKPDRHTLSSVLSVSAGIVDLQLGMQIHQ 388

Query: 257 LFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMP-DRDAVAWTAMISGLVQNELFVE 315
           L     + D     ++I  Y   G +  A  +F  +   ++ ++W AMI G   +   VE
Sbjct: 389 LVTKTVIPDVPINNALITMYSRCGAIIEAGTIFDEVKLQKEVISWNAMIGGYASHGYAVE 448

Query: 316 ATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILEN--CL 373
           A  +F  M++  V P + TF  +  A      ++ GR+I    M  E   +  +E+   L
Sbjct: 449 ALEVFKLMKSFDVRPTHITFISVLHACAHAGLVEEGREIFES-MADEFGIEPSVEHYASL 507

Query: 374 ISMYAKCGVIDNAYNIFSNM-VSRDLVSWNSMVMGFSHH 411
           + + ++ G ++ A ++ ++M    D   W +++     H
Sbjct: 508 VDIMSRHGQLEQALDLINSMPFEPDKAVWGALLSAAKVH 546



 Score =  132 bits (332), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 103/368 (27%), Positives = 180/368 (48%), Gaps = 24/368 (6%)

Query: 11  VVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPE 70
           VV   + I  Y K G I  A+ LF  M +R+ +S+N M+SG++    + EA RLF EMP 
Sbjct: 236 VVSWNTMIMCYVKAGNIVFARELFDQMMERDTISWNTMISGYVNMLDMDEASRLFCEMPN 295

Query: 71  RNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSM 130
            ++ SW  MI G A  G +     LF  MP++N+VSWNS++ G  +N +   A K+F  M
Sbjct: 296 PDIFSWNKMIAGHAQIGDLDRVNDLFGRMPQKNLVSWNSVITGYEKNDDYIGAIKIFIQM 355

Query: 131 PIK-------NVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVE 183
            ++        + S  ++ AG V+  +  +   L  +    +V    ++I+ Y R G + 
Sbjct: 356 QVEGEKPDRHTLSSVLSVSAGIVDLQLGMQIHQLVTKTVIPDVPINNALITMYSRCGAII 415

Query: 184 EGYCLFRRMP-RKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMI 242
           E   +F  +  +K V+SW AMIGG+A +G+  E+L +F  MK       +    +  S++
Sbjct: 416 EAGTIFDEVKLQKEVISWNAMIGGYASHGYAVEALEVFKLMKSFDVRPTHI---TFISVL 472

Query: 243 NGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSV-------GQVSNAYYLFHNMP-D 294
           +     G +EE + +F+++   DE      ++ Y S+       GQ+  A  L ++MP +
Sbjct: 473 HACAHAGLVEEGREIFESMA--DEFGIEPSVEHYASLVDIMSRHGQLEQALDLINSMPFE 530

Query: 295 RDAVAWTAMISGL-VQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQ 353
            D   W A++S   V N+  +E   +  E      P  +A + +L+         D   +
Sbjct: 531 PDKAVWGALLSAAKVHNK--IEVARVAAEALIRLEPDSSAPYVLLYNMYADVGQWDSAAE 588

Query: 354 IHCVLMKT 361
           +  ++ ++
Sbjct: 589 VRIMMERS 596


>gi|356510733|ref|XP_003524089.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62260,
           mitochondrial-like [Glycine max]
          Length = 649

 Score =  379 bits (972), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 211/629 (33%), Positives = 349/629 (55%), Gaps = 69/629 (10%)

Query: 5   NHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRL 64
           N+  S +      ++   + G I EA+ LF  M +R+ V++N+M+SG++Q   ++ AR+L
Sbjct: 32  NYNSSPLNQSNKKLSNLIRSGRISEARTLFDSMKRRDTVTWNSMISGYVQRREIARARQL 91

Query: 65  FEEMPERNVVSWTAMICGL---ADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELN 121
           F+EMP R+VVSW  ++ G      +  V E R+LFE MP+R+ VSWN+++ G  +NG ++
Sbjct: 92  FDEMPRRDVVSWNLIVSGYFSCCGSRFVEEGRRLFELMPQRDCVSWNTVISGYAKNGRMD 151

Query: 122 EARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERN---------------- 165
           +A K+FN+MP  N +S+NA+I G++    +  A+  F  M E +                
Sbjct: 152 QALKLFNAMPEHNAVSYNAVITGFLLNGDVESAVGFFRTMPEHDSTSLCALISGLVRNGE 211

Query: 166 ---------------------VVTWTSMISGYCRAGEVEEGYCLFRRMP----------- 193
                                V  + ++I+GY + G VEE   LF  +P           
Sbjct: 212 LDLAAGILRECGNGDDGKDDLVHAYNTLIAGYGQRGHVEEARRLFDVIPDDDDDGNEGKR 271

Query: 194 --RKNVVSWTAMIGGFAWNG---FHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRF 248
             R+NVVSW +M+  +   G   F +E     +E        +NC   S N++I+ Y++ 
Sbjct: 272 RFRRNVVSWNSMMMCYVKAGDIVFARELFDRMVER-------DNC---SWNTLISCYVQI 321

Query: 249 GRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLV 308
             +EEA  LF  +P  D +SW S+I G    G ++ A   F  MP ++ ++W  +I+G  
Sbjct: 322 SNMEEASKLFREMPSPDVLSWNSIISGLAQKGDLNLAKDFFERMPHKNLISWNTIIAGYE 381

Query: 309 QNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLI 368
           +NE +  A  LF EM+  G  P   T S +   +    ++ LG+Q+H ++ KT    D  
Sbjct: 382 KNEDYKGAIKLFSEMQLEGERPDKHTLSSVISVSTGLVDLYLGKQLHQLVTKT-VLPDSP 440

Query: 369 LENCLISMYAKCGVIDNAYNIFSNM-VSRDLVSWNSMVMGFSHHGLANETLKVFESMLES 427
           + N LI+MY++CG I +A  +F+ + + +D+++WN+M+ G++ HG A E L++F+ M   
Sbjct: 441 INNSLITMYSRCGAIVDACTVFNEIKLYKDVITWNAMIGGYASHGSAAEALELFKLMKRL 500

Query: 428 GTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKE 487
             HP  +TF+ +L+AC+HAGLV  GW  F +M + Y I+P  EH+ S++++LGR G+++E
Sbjct: 501 KIHPTYITFISVLNACAHAGLVEEGWRQFKSMINDYGIEPRVEHFASLVDILGRQGQLQE 560

Query: 488 AEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYA 547
           A + +  +PF+PD  +WGALLGAC     N E+A  AA  L+ L+P ++  +V+L N+YA
Sbjct: 561 AMDLINTMPFKPDKAVWGALLGACR-VHNNVELALVAADALIRLEPESSAPYVLLYNMYA 619

Query: 548 ASGRHVEEHKLRMDMGLKGVRKVPGCSWL 576
             G+  +   +R+ M  K V+K  G SW+
Sbjct: 620 NLGQWDDAESVRVLMEEKNVKKQAGYSWV 648



 Score = 92.4 bits (228), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 75/283 (26%), Positives = 135/283 (47%), Gaps = 46/283 (16%)

Query: 4   RNHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARR 63
           R  P   V+   S I+  +++G ++ AK  F+ MP +N++S+N +++G+ +N     A +
Sbjct: 332 REMPSPDVLSWNSIISGLAQKGDLNLAKDFFERMPHKNLISWNTIIAGYEKNEDYKGAIK 391

Query: 64  LFEEM------PERNVVSWTAMI-CGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIR 116
           LF EM      P+++ +S    +  GL D     +  +L  +    +    NS++    R
Sbjct: 392 LFSEMQLEGERPDKHTLSSVISVSTGLVDLYLGKQLHQLVTKTVLPDSPINNSLITMYSR 451

Query: 117 NGELNEARKVFNSMPI-KNVISWNAMIAGYVECCMMGEAIVLFEEMEERNV----VTWTS 171
            G + +A  VFN + + K+VI+WNAMI GY       EA+ LF+ M+   +    +T+ S
Sbjct: 452 CGAIVDACTVFNEIKLYKDVITWNAMIGGYASHGSAAEALELFKLMKRLKIHPTYITFIS 511

Query: 172 MISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGN 231
           +++    AG VEEG+  F+ M                                 I D G 
Sbjct: 512 VLNACAHAGLVEEGWRQFKSM---------------------------------INDYGI 538

Query: 232 NCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVR-DEISWTSMI 273
              V+   S+++   R G+L+EA +L +T+P + D+  W +++
Sbjct: 539 EPRVEHFASLVDILGRQGQLQEAMDLINTMPFKPDKAVWGALL 581


>gi|413952592|gb|AFW85241.1| hypothetical protein ZEAMMB73_384525 [Zea mays]
          Length = 683

 Score =  378 bits (971), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 214/616 (34%), Positives = 337/616 (54%), Gaps = 32/616 (5%)

Query: 7   PKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGF---LQNGRLSEARR 63
           P   VV   S +   S+   +  A+  F  MP R+++S+N +LS +   LQ   L+ ARR
Sbjct: 63  PARSVVTWNSLLAALSRGSDVRAARCFFDAMPVRDIISWNTLLSAYARSLQPNDLAAARR 122

Query: 64  LFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEA 123
           LF EMP+R+ VSW+ ++      G + EA++LF+EMP RN  SWN+M+ G    G++ +A
Sbjct: 123 LFYEMPQRDAVSWSTLLGAYTRRGLMEEAQRLFDEMPHRNASSWNTMITGFFAVGQMRKA 182

Query: 124 RKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEE----ME-ERNVVTWTSMISGYCR 178
             VF +MP K+  S +AM++G++    + EA  L  +    M+ ++ V  + ++I+ Y +
Sbjct: 183 LNVFAAMPDKDSASLSAMVSGFIRNGRLHEADDLLTKRLTVMDMDKAVGAFNTLIAAYGQ 242

Query: 179 AGEVEEGYCLFRRMPR--------------KNVVSWTAMIGGFAWNGFHKESLLLFIEMK 224
            G V +   LF  +P+              +NVVSW +M+  +   G    +  LF EM 
Sbjct: 243 TGRVTDARRLFSMIPKTQNQHKGHKRMVFERNVVSWNSMMMCYIRTGDVCSARALFDEMP 302

Query: 225 GICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSN 284
                  + ++ S N+MI GY +   +EEA+ LF  VP  D ++W  MI G+   G V +
Sbjct: 303 -------HKDLVSWNTMIAGYTQASEMEEAEKLFWEVPDPDAVTWNLMIRGFTQKGDVEH 355

Query: 285 AYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGA 344
           A   F  MP+R  + W  MISG  QNE +     LF  M   G  P + T S +  A  +
Sbjct: 356 ARGFFDRMPERSTITWNTMISGYEQNEDYDSTIKLFQRMLEVGERPDHHTLSSVLAACAS 415

Query: 345 TANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNM-VSRDLVSWNS 403
            A + LG Q+H ++ K+    D    N L++MY++CG + +A  IF +M   RD+VSWN+
Sbjct: 416 LAMLRLGAQLHQLIEKS-FLPDTATNNALMTMYSRCGELISAKAIFGHMHTQRDIVSWNA 474

Query: 404 MVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVY 463
           ++ G+   G A E L++FE M  +   P  +TF+ +LSAC +AGLVS G  +F+ M   Y
Sbjct: 475 LIGGYEQQGNATEALRLFEEMRSAKVMPTHITFISLLSACGNAGLVSEGRVVFHTMVHDY 534

Query: 464 KIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEH 523
            +    EHY +++NL+GR G++++A E +  +P  PD  +WGA LGAC   + N  +AE 
Sbjct: 535 GLAASVEHYAALVNLIGRHGQLEDALELIKSMPIAPDRAVWGAFLGACT-AKKNEPLAEM 593

Query: 524 AAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQ 583
           AA  L ++DP ++  +V++ N++A  GR      +R DM   G+ K PG SW+  +  + 
Sbjct: 594 AANALSKIDPDSSAPYVLMHNLHAHEGRWGSASLVREDMERLGIHKHPGYSWIDLHDKVH 653

Query: 584 MFLSGDKIPAQVAEIL 599
           +F+SGD       EI 
Sbjct: 654 VFISGDTSHPLTHEIF 669


>gi|242094598|ref|XP_002437789.1| hypothetical protein SORBIDRAFT_10g002620 [Sorghum bicolor]
 gi|241916012|gb|EER89156.1| hypothetical protein SORBIDRAFT_10g002620 [Sorghum bicolor]
          Length = 623

 Score =  377 bits (968), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 199/548 (36%), Positives = 320/548 (58%), Gaps = 12/548 (2%)

Query: 46  NAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPE--RN 103
           N +++     GR+ +AR+LF+  P+ +VVSWTA++   A  G + +AR+LF+  P+  RN
Sbjct: 46  NRLIAELAAAGRVWDARKLFDGTPDWDVVSWTALVSAYARRGMLRDARELFDR-PDARRN 104

Query: 104 VVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEE 163
           VV+W +++ G  R   ++EA  +F  MP +NV+SWN M+  Y     +G+A  LF+ M  
Sbjct: 105 VVTWTALLSGYARARLVDEAEALFQRMPQRNVVSWNTMLEAYAAAGRVGDACALFDRMPV 164

Query: 164 RNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEM 223
           R+  +W  +++   R+G V++   LF RMP ++V++WT M+ G A +G   E+ +LF  M
Sbjct: 165 RDAGSWNILLATLVRSGSVDKARELFGRMPERDVMAWTTMVDGVARSGKVDEARVLFDSM 224

Query: 224 KGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVS 283
                     NV S N+MI+GY R  R++EA +LF  +P RD  S   M+ G++    + 
Sbjct: 225 P-------ERNVVSWNAMISGYTRNHRIDEALDLFMKMPERDIASCNIMVTGFIQNKDLK 277

Query: 284 NAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAG 343
            A  LF  MP+R+ V WT M++G ++ +    A  LF  M   G  P   TF     A  
Sbjct: 278 RARELFDEMPERNVVTWTTMMNGYLKGKQSELALGLFSGMLMAGTRPNQVTFLGALDACS 337

Query: 344 ATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNS 403
             A +  G+Q+H ++ KT  + D  +E+ L+++YAKCG I  A  +F     +DL+SWN 
Sbjct: 338 DLAALCEGKQVHQMICKTTFQFDAFVESALMNVYAKCGEIGLARKLFDLSREKDLISWNG 397

Query: 404 MVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVY 463
           ++  ++HHG+  E + ++E M E+G  PN VT++ +LSACSH+GLV  G ++F +M +  
Sbjct: 398 IIAAYAHHGVGIEAILLYEKMQENGYRPNDVTYVVLLSACSHSGLVDEGLKIFESMVNDR 457

Query: 464 KIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEP-DHRIWGALLGACGFCEGNAEIAE 522
            I    EHY  +I+L  RAG++ +A+  +  L  +P    +W ALLG C    GN  I  
Sbjct: 458 SIAVRDEHYTCLIDLCSRAGRLDDAKRLIHYLKIKPASGSVWSALLGGCN-AHGNESIGN 516

Query: 523 HAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGI 582
            AA+ LL+ +P NA  + +L NIYA++G+  E  ++R +M  +G++K PGCSW+     +
Sbjct: 517 LAARNLLQAEPDNAGTYTLLSNIYASAGKWKEAAEIRSEMNNRGLKKQPGCSWIEVANKV 576

Query: 583 QMFLSGDK 590
            +F++ DK
Sbjct: 577 HVFVARDK 584



 Score =  225 bits (573), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 133/426 (31%), Positives = 236/426 (55%), Gaps = 18/426 (4%)

Query: 3   ERNHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEAR 62
           +R   +  VV  T+ ++ Y++   +DEA+ALFQ MPQRNVVS+N ML  +   GR+ +A 
Sbjct: 97  DRPDARRNVVTWTALLSGYARARLVDEAEALFQRMPQRNVVSWNTMLEAYAAAGRVGDAC 156

Query: 63  RLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNE 122
            LF+ MP R+  SW  ++  L  +G V +AR+LF  MPER+V++W +MV G+ R+G+++E
Sbjct: 157 ALFDRMPVRDAGSWNILLATLVRSGSVDKARELFGRMPERDVMAWTTMVDGVARSGKVDE 216

Query: 123 ARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEV 182
           AR +F+SMP +NV+SWNAMI+GY     + EA+ LF +M ER++ +   M++G+ +  ++
Sbjct: 217 ARVLFDSMPERNVVSWNAMISGYTRNHRIDEALDLFMKMPERDIASCNIMVTGFIQNKDL 276

Query: 183 EEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMI 242
           +    LF  MP +NVV+WT M+ G+      + +L LF    G+   G   N  +    +
Sbjct: 277 KRARELFDEMPERNVVTWTTMMNGYLKGKQSELALGLF---SGMLMAGTRPNQVTFLGAL 333

Query: 243 NGYIRFGRLEEA----QNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAV 298
           +       L E     Q +  T    D    +++++ Y   G++  A  LF    ++D +
Sbjct: 334 DACSDLAALCEGKQVHQMICKTTFQFDAFVESALMNVYAKCGEIGLARKLFDLSREKDLI 393

Query: 299 AWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVL 358
           +W  +I+    + + +EA  L+ +M+ +G  P + T+ VL  A   +  +D G +I   +
Sbjct: 394 SWNGIIAAYAHHGVGIEAILLYEKMQENGYRPNDVTYVVLLSACSHSGLVDEGLKIFESM 453

Query: 359 MKTESESDLILEN----CLISMYAKCGVIDNAYNIFSNMVSRDLVS--WNSMVMGFSHHG 412
           +   S   + + +    CLI + ++ G +D+A  +   +  +      W++++ G + HG
Sbjct: 454 VNDRS---IAVRDEHYTCLIDLCSRAGRLDDAKRLIHYLKIKPASGSVWSALLGGCNAHG 510

Query: 413 LANETL 418
             NE++
Sbjct: 511 --NESI 514


>gi|413917533|gb|AFW57465.1| hypothetical protein ZEAMMB73_932577 [Zea mays]
          Length = 677

 Score =  377 bits (967), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 222/632 (35%), Positives = 344/632 (54%), Gaps = 66/632 (10%)

Query: 13  HLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERN 72
           HL + +T Y +RG I +A+ LF  MP+R+V+S+ A+L+ + + G  + AR +F++MP RN
Sbjct: 41  HLNALLTSYGRRGRIQDAQQLFDRMPRRDVISWTALLTAYAEGGDFASARLVFDDMPRRN 100

Query: 73  VVSWTAM-------------------------------ICGLADAGRVCEARKLFEEMPE 101
            VSW A+                               I GLA AG + EA+ ++ EMP 
Sbjct: 101 AVSWNALLSLYLGAGRPAAAHALFCKTPAKNAVSYGVIITGLARAGMLREAQAVYGEMPP 160

Query: 102 R--NVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFE 159
           R  + V  N+M++G +R GE++ A +VF++M  ++VISW++M+ G  +   + EA  LFE
Sbjct: 161 RLRDPVGSNAMILGYLRAGEIDMALRVFDTMAARDVISWSSMVDGLCKYGTVSEARRLFE 220

Query: 160 EMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNV-------------VSWTAMIG- 205
            M ERNVV+WTSM+ GY + G   EG  LF  M R+ V              +  +++G 
Sbjct: 221 AMPERNVVSWTSMVRGYVKCGMYREGLLLFLDMRREGVQVNAITLSVVLDGCAQASLVGE 280

Query: 206 -----------GFAWNGFHKESLLLF-------IEMKGICDNGNNCNVQSCNSMINGYIR 247
                      GF  + F   SL++        ++ + +       ++ S NS+I GY++
Sbjct: 281 GIQVHCLMTRMGFVTDIFLDGSLIIMYSRFGWMVDARRVFAFMKQKDIVSWNSLITGYVQ 340

Query: 248 FGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGL 307
              +E+A  LF  +P RD ISWTS++ G+ + G +  +  LF  MP +D +AWTA+IS  
Sbjct: 341 NNMIEDAHVLFKLMPERDAISWTSVVVGFANRGWMRESVELFEQMPVKDDIAWTAVISSF 400

Query: 308 VQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDL 367
           + N   V     F +M   G  P  A FS L  A  + A ++ G Q H   +      D 
Sbjct: 401 IANGNHVSVVRWFCQMSQEGCRPNTAAFSCLLSALASLAMLNQGLQAHAYAVNMGWIFDS 460

Query: 368 ILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLES 427
            +   L++MYAKCG +  A+ +FS + +  LV+ NSM+  F+ HGLA + LK+F  M   
Sbjct: 461 AVHASLVTMYAKCGRLAEAHRVFSCIRNPSLVAINSMISAFAQHGLAEDALKLFNRMQYD 520

Query: 428 GTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKE 487
           G  PN VTFLGIL+AC+ AGLV +G+  F +M  VY IQP P+HY  M+NLLG AG + E
Sbjct: 521 GQRPNHVTFLGILTACARAGLVQQGYNYFESMRSVYGIQPNPDHYTCMVNLLGHAGFLDE 580

Query: 488 AEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYA 547
           A E +  +P +     W ALL +      N ++A+ AA+RLLE+DP +  A+ VL N+++
Sbjct: 581 ALEMINSMPQKDYPDAWAALL-SSSSLHSNLDLAKLAAQRLLEIDPYDTTAYRVLTNMFS 639

Query: 548 ASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRN 579
           ++G   +E  +++        K PG S ++++
Sbjct: 640 SAGLKGDEEMVKVAQLSNMASKRPGYSLIIQD 671


>gi|325260820|gb|ADZ04639.1| hypothetical protein [Oryza glaberrima]
          Length = 674

 Score =  377 bits (967), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 220/637 (34%), Positives = 333/637 (52%), Gaps = 67/637 (10%)

Query: 13  HLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERN 72
           HL + +T Y +RG + +A+ LF  MP R+V+S+ A+L+ +   G L+ AR +F++MP RN
Sbjct: 40  HLNALLTSYGRRGRLRDAQLLFDQMPSRDVISWTALLTAYADGGDLASARLVFDDMPRRN 99

Query: 73  VVSWTAM-------------------------------ICGLADAGRVCEARKLFEEMPE 101
             SW A+                               I GLA A  + EA  ++EEMP 
Sbjct: 100 APSWNALLSVYLRAARPRAAHALFYKMPAKNAVSYGAIISGLAKAEMLHEAELVYEEMPW 159

Query: 102 --RNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFE 159
             R+ V  N+++ G +R GEL  A +VF  M +++VISW+AM+ G  +   + EA  +F+
Sbjct: 160 QWRDPVGSNALMAGYLRVGELAMALRVFEGMTVRDVISWSAMVDGLCKHGSVSEARRVFD 219

Query: 160 EMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIG-------------- 205
            M ERNVV+WTSMI GY + G   +G  LF  M R+ V   T  +               
Sbjct: 220 AMPERNVVSWTSMIRGYVKRGMCRDGLLLFLNMRREGVQVNTTTLSVALDACAVASLARE 279

Query: 206 -----------GFAWNGFHKESLLLF-------IEMKGICDNGNNCNVQSCNSMINGYIR 247
                      GF  + F  +S+++        ++ K   D     ++ S NS+I GY++
Sbjct: 280 GIQIHNLIISMGFELDIFLGDSIIIMYSRFGWMVDAKRAFDCMQQKDIVSWNSLITGYVQ 339

Query: 248 FGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGL 307
              +EEA  LF  +  +D +SWTSM+ G+ + G +  +  LF  MP +D VAWTA+IS  
Sbjct: 340 HDMVEEAHVLFKLMHQKDAVSWTSMVVGFANRGWMRESVELFEQMPVKDEVAWTAIISSF 399

Query: 308 VQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDL 367
           + N  ++ A   F  M   G  P    FS L  A  + A ++ GRQ H   +      D 
Sbjct: 400 ITNGDYLSAVRWFCRMSQEGCKPNTIAFSCLLSALASLAMLNQGRQAHAYSINMGWVFDS 459

Query: 368 ILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLES 427
            +   L+SMYAKCG +  AY++FS++ +  L++ NSM+  F  HG   + LK+F  M  +
Sbjct: 460 AVHTSLVSMYAKCGRLAEAYHVFSSISNPSLIAINSMITAFVQHGFVEDALKLFTKMQNA 519

Query: 428 GTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKE 487
           G  PN VTFLGIL+ C+ AG V +G+  F +M  VY ++P PEHY  M++LLGRAG + E
Sbjct: 520 GYKPNHVTFLGILTGCARAGFVQQGYNYFESMRPVYGVEPNPEHYTCMVDLLGRAGLLAE 579

Query: 488 AEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYA 547
           A E +  +P       W ALL A      N   A+ AA++LLE DP +A A+ VL  +++
Sbjct: 580 ALEMINSMPQNDHSDAWAALLSASSL-HSNLAFAKIAAQKLLEKDPYDATAYTVLSRMFS 638

Query: 548 ASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQM 584
           ++G   EE  L++        K PG S +M++   ++
Sbjct: 639 SAGMEDEE-MLKVVQLSNLASKRPGYSLIMQDKATEI 674


>gi|115474659|ref|NP_001060926.1| Os08g0131000 [Oryza sativa Japonica Group]
 gi|42408463|dbj|BAD09644.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|50725835|dbj|BAD33365.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113622895|dbj|BAF22840.1| Os08g0131000 [Oryza sativa Japonica Group]
 gi|215704880|dbj|BAG94908.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|215712334|dbj|BAG94461.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 674

 Score =  376 bits (966), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 220/637 (34%), Positives = 333/637 (52%), Gaps = 67/637 (10%)

Query: 13  HLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERN 72
           HL + +T Y +RG + +A+ LF  MP R+V+S+ A+L+ +   G L+ AR +F++MP RN
Sbjct: 40  HLNALLTSYGRRGRLRDAQLLFDQMPSRDVISWTALLTAYADGGDLASARLVFDDMPRRN 99

Query: 73  VVSWTAM-------------------------------ICGLADAGRVCEARKLFEEMPE 101
             SW A+                               I GLA A  + EA  ++EEMP 
Sbjct: 100 APSWNALLSVYLRAARPRAAHALFYKMPAKNAVSYGAIISGLAKAEMLHEAELVYEEMPW 159

Query: 102 --RNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFE 159
             R+ V  N+++ G +R GEL  A +VF  M +++VISW+AM+ G  +   + EA  +F+
Sbjct: 160 QWRDPVGSNALMAGYLRVGELAMALRVFEGMTVRDVISWSAMVDGLCKHGSVSEARRVFD 219

Query: 160 EMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIG-------------- 205
            M ERNVV+WTSMI GY + G   +G  LF  M R+ V   T  +               
Sbjct: 220 AMPERNVVSWTSMIRGYVKRGMCRDGLLLFLNMRREGVQVNTTTLSVALDACAAASLARE 279

Query: 206 -----------GFAWNGFHKESLLLF-------IEMKGICDNGNNCNVQSCNSMINGYIR 247
                      GF  + F  +S+++        ++ K   D     ++ S NS+I GY++
Sbjct: 280 GIQIHNLIISMGFELDIFLGDSIIIMYSRFGWMVDAKRAFDCMQQKDIVSWNSLITGYVQ 339

Query: 248 FGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGL 307
              +EEA  LF  +  +D +SWTSM+ G+ + G +  +  LF  MP +D VAWTA+IS  
Sbjct: 340 HDMVEEAHVLFKLMHQKDAVSWTSMVVGFANRGWMRESVELFEQMPVKDEVAWTAIISSF 399

Query: 308 VQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDL 367
           + N  ++ A   F  M   G  P    FS L  A  + A ++ GRQ H   +      D 
Sbjct: 400 ITNGDYLSAVRWFCRMSQEGCKPNTIAFSCLLSALASLAMLNQGRQAHAYSINMGWVFDS 459

Query: 368 ILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLES 427
            +   L+SMYAKCG +  AY++FS++ +  L++ NSM+  F  HG   + LK+F  M  +
Sbjct: 460 AVHTSLVSMYAKCGRLAEAYHVFSSISNPSLIAINSMITAFVQHGFVEDALKLFTKMQNA 519

Query: 428 GTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKE 487
           G  PN VTFLGIL+ C+ AG V +G+  F +M  VY ++P PEHY  M++LLGRAG + E
Sbjct: 520 GYKPNHVTFLGILTGCARAGFVQQGYNYFESMRPVYGVEPNPEHYTCMVDLLGRAGLLAE 579

Query: 488 AEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYA 547
           A E +  +P       W ALL A      N   A+ AA++LLE DP +A A+ VL  +++
Sbjct: 580 ALEMINSMPQNDHSDAWAALLSASSL-HSNLAFAKIAAQKLLEKDPYDATAYTVLSRMFS 638

Query: 548 ASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQM 584
           ++G   EE  L++        K PG S +M++   ++
Sbjct: 639 SAGMEDEE-MLKVVQLSNLASKRPGYSLIMQDKATEI 674


>gi|18481717|gb|AAL73539.1|AF466200_18 hypothetical protein S250_18C08.29 [Sorghum bicolor]
          Length = 679

 Score =  376 bits (965), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 225/632 (35%), Positives = 340/632 (53%), Gaps = 66/632 (10%)

Query: 13  HLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERN 72
           HL + +T Y +RG I +A+ LF  MP R+V+S+ A+L+ +   G L+ AR +F++MP RN
Sbjct: 43  HLNALLTSYGRRGRIQDAQQLFDRMPHRDVISWTALLTAYADVGNLASARFVFDDMPLRN 102

Query: 73  VVSWTAM-------------------------------ICGLADAGRVCEARKLFEEMPE 101
             SW A+                               I GLA AG + EA+ ++ EMP 
Sbjct: 103 AASWNALVSLYLRAGRPAAAHALFCKAPAKNAVSYGAIITGLARAGMLREAQAVYWEMPP 162

Query: 102 R--NVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFE 159
           R  + V  N+M+ G +R GEL  A +VF+ M  ++VISW+AM+ G  +   + EA  LFE
Sbjct: 163 RWRDPVGSNAMIWGYLRGGELGMALRVFDGMAARDVISWSAMVDGLCKYGTVSEARRLFE 222

Query: 160 EMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRK----NVVSWTAMIGG--------- 206
            M ERNVV+WTSMI GY + G   +G  LF  M R+    N+++ + ++ G         
Sbjct: 223 AMPERNVVSWTSMIRGYVKHGMYRDGLLLFLDMRREGVQVNMITLSVVLDGCAQASLVDE 282

Query: 207 ------------FAWNGFHKESLLLFIEMKGICDNG-------NNCNVQSCNSMINGYIR 247
                       FA + F  +SL++     G   +        N  ++ S NS+I GY++
Sbjct: 283 GSQVHCLMIRMGFAEDIFLGDSLIIMYSRFGSMADARSLFSFMNQKDIVSWNSLITGYVQ 342

Query: 248 FGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGL 307
              +E+A  LF  +P +D ISWTSM+ G+ + G +  +  LF  MP +D +AW A++S L
Sbjct: 343 NDMIEDAHVLFKLMPEKDAISWTSMVVGFANRGWMRESVELFEQMPVKDEIAWAAVMSSL 402

Query: 308 VQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDL 367
           V N  +V A   F +M   G  P    FS L  A  + A ++ G Q H   +      D 
Sbjct: 403 VANGNYVSAVRWFCQMSQEGCRPNTVAFSCLLSALASLAMLNQGLQAHAYAVNMGWIFDS 462

Query: 368 ILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLES 427
            +   L++MYAKCG +  A+ +FS +    L++ NSM+  F+ HGLA +  K+F  M   
Sbjct: 463 AVHASLVTMYAKCGRLAEAHRVFSCISHPSLIATNSMITAFAQHGLAEDAFKLFNRMQYD 522

Query: 428 GTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKE 487
           G  PN VTFLGIL+AC+ AGLV  G+  F +M  VY IQP P+HY  M++LLGRAG + E
Sbjct: 523 GQRPNHVTFLGILTACARAGLVQHGYNYFESMRSVYGIQPNPDHYTCMVDLLGRAGFLNE 582

Query: 488 AEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYA 547
           A E    +P +     W ALL +      N ++A+ AA+RLLE+DP +A A+ VL N+++
Sbjct: 583 ALEMTNSMPQKDYPDAWKALL-SSSSLHSNLDLAKLAAQRLLEIDPYDATAYTVLSNMFS 641

Query: 548 ASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRN 579
           ++G   +E  +++        K PG S ++++
Sbjct: 642 SAGMKEDEEMVKVAQLSNMASKSPGYSLIIQD 673


>gi|242080473|ref|XP_002445005.1| hypothetical protein SORBIDRAFT_07g002620 [Sorghum bicolor]
 gi|241941355|gb|EES14500.1| hypothetical protein SORBIDRAFT_07g002620 [Sorghum bicolor]
          Length = 679

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 223/632 (35%), Positives = 339/632 (53%), Gaps = 66/632 (10%)

Query: 13  HLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERN 72
           HL + +T Y +RG I +A+ LF  MP R+V+S+ A+L+ +   G L+ AR +F++MP RN
Sbjct: 43  HLNALLTSYGRRGRIQDAQQLFDRMPHRDVISWTALLTAYADVGNLASARFVFDDMPLRN 102

Query: 73  VVSWTAM-------------------------------ICGLADAGRVCEARKLFEEMPE 101
             SW A+                               I GLA AG + EA+ ++ EMP 
Sbjct: 103 AASWNALVSLYLRAGRPAAAHALFCKAPAKNAVSYGAIITGLARAGMLREAQAVYWEMPP 162

Query: 102 R--NVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFE 159
           R  + V  N+M+ G +R GEL  A +VF+ M  ++VISW+AM+ G  +   + EA  LFE
Sbjct: 163 RWRDPVGSNAMIWGYLRGGELGMALRVFDGMAARDVISWSAMVDGLCKYGTVSEARRLFE 222

Query: 160 EMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRK----NVVSWTAMIGG--------- 206
            M ERNVV+WTSMI GY + G   +G  LF  M R+    N+++ + ++ G         
Sbjct: 223 AMPERNVVSWTSMIRGYVKHGMYRDGLLLFLDMRREGVQVNMITLSVVLDGCAQASLVDE 282

Query: 207 ------------FAWNGFHKESLLLFIEMKGICDNG-------NNCNVQSCNSMINGYIR 247
                       FA + F  +SL++     G   +        N  ++ S NS+I GY++
Sbjct: 283 GSQVHCLMIRMGFAEDIFLGDSLIIMYSRFGSMADARSLFSFMNQKDIVSWNSLITGYVQ 342

Query: 248 FGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGL 307
              +E+A  LF  +P +D ISWTSM+ G+ + G +  +  LF  MP +D +AW A++S L
Sbjct: 343 NDMIEDAHVLFKLMPEKDAISWTSMVVGFANRGWMRESVELFEQMPVKDEIAWAAVMSSL 402

Query: 308 VQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDL 367
           V N  +V A   F +M   G  P    FS L  A  + A ++ G Q H   +      D 
Sbjct: 403 VANGNYVSAVRWFCQMSQEGCRPNTVAFSCLLSALASLAMLNQGLQAHAYAVNMGWIFDS 462

Query: 368 ILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLES 427
            +   L++MYAKCG +  A+ +FS +    L++ NSM+  F+ HGLA +  K+F  M   
Sbjct: 463 AVHASLVTMYAKCGRLAEAHRVFSCISHPSLIATNSMITAFAQHGLAEDAFKLFNRMQYD 522

Query: 428 GTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKE 487
           G  PN VTFLGIL+AC+ AGLV  G+  F +M  VY IQP P+HY  M++LLGRAG + E
Sbjct: 523 GQRPNHVTFLGILTACARAGLVQHGYNYFESMRSVYGIQPNPDHYTCMVDLLGRAGFLNE 582

Query: 488 AEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYA 547
           A E    +P +     W  +L +      N ++A+ AA+RLLE+DP +A A+ VL N+++
Sbjct: 583 ALEMTNSMPQKDYPDAW-KVLLSSSSLHSNLDLAKLAAQRLLEIDPYDATAYTVLSNMFS 641

Query: 548 ASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRN 579
           ++G   +E  +++        K PG S ++++
Sbjct: 642 SAGMKEDEEMVKVAQLSNMASKSPGYSLIIQD 673


>gi|225449732|ref|XP_002267472.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Vitis vinifera]
          Length = 1058

 Score =  374 bits (959), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 220/663 (33%), Positives = 340/663 (51%), Gaps = 73/663 (11%)

Query: 7   PKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFE 66
           P+  V    S +T Y     + EA+ LF  MP+RN VS+  M+SG++      EA  +F 
Sbjct: 291 PEKNVASWNSVVTGYCHCYRMSEARELFDQMPERNSVSWMVMISGYVHISDYWEAWDVFV 350

Query: 67  EM------PERNV-VSWTAMICGLADA--------------------------------G 87
           +M      P++++ V   + I GL D                                 G
Sbjct: 351 KMCRTVARPDQSIFVVVLSAITGLDDLELIGSLRPIAIKTGYEGDVVVGSAILNAYTRNG 410

Query: 88  RVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVE 147
            +  A   FE MPERN  SW +M+    + G L++A +++  +P + V +  AM+  Y +
Sbjct: 411 SLDLAMHFFETMPERNEYSWTTMIAAFAQCGRLDDAIQLYERVPEQTVATKTAMMTAYAQ 470

Query: 148 CCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGF 207
              + +A ++F+E+   NVV W ++I+GY + G ++E   LF++MP KN  SW AMI GF
Sbjct: 471 VGRIQKARLIFDEILNPNVVAWNAIIAGYTQNGMLKEAKDLFQKMPVKNSASWAAMIAGF 530

Query: 208 AWNGFHKESLLLFIEMK---------------GICDN-----------------GNNCNV 235
             N   +E+L L IE+                  C N                 G   N 
Sbjct: 531 VQNEESREALELLIELHRSGSVPSDSSFTSALSACANIGDVEIGRVIHSLAIKTGCQFNS 590

Query: 236 QSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDR 295
              N +I+ Y + G +E+  ++F T+ V+D +SW S+I G      + +A  +F  MP R
Sbjct: 591 YVMNGLISMYAKCGNVEDGSHVFRTIRVKDTVSWNSLISGLSENYMLDDARVVFEKMPKR 650

Query: 296 DAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIH 355
           D V+WTA+IS  VQ      A  LF++M A G+ P   T + L  A G    I LG Q H
Sbjct: 651 DVVSWTAIISAYVQAGHGEVALDLFLDMLARGIKPNQLTVTSLLSACGNLGAIKLGEQFH 710

Query: 356 CVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLAN 415
            ++ K   ++ L + N LI+MY KCG  ++ + +F  M   DL++WN++++G + +GL  
Sbjct: 711 ALIFKLGFDTFLFVGNSLITMYFKCGY-EDGFCVFEEMPEHDLITWNAVLVGCAQNGLGK 769

Query: 416 ETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSM 475
           E +K+FE M   G  P+ ++FLG+L ACSHAGLV  GW  FN+M   Y I P   HY  M
Sbjct: 770 EAIKIFEQMEVEGILPDQMSFLGVLCACSHAGLVDEGWAHFNSMTQKYGIMPLVYHYTCM 829

Query: 476 INLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLN 535
           ++LLGRAG + EAE  +  +P +PD  IW ALLGAC     N E+ +  A+RL ++    
Sbjct: 830 VDLLGRAGYLSEAEALIENMPVKPDSVIWEALLGACRI-HRNVELGQRVAERLFQMTKPK 888

Query: 536 APAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQV 595
           +  +V+L N++A+ G   +  ++R  M  +G+ K PG SW+     +  F++GD+   Q+
Sbjct: 889 SATYVLLSNLFASQGMWDKVAEIRKLMKDQGLTKEPGISWIQVKNKLHCFVTGDRTHDQI 948

Query: 596 AEI 598
            EI
Sbjct: 949 EEI 951



 Score =  295 bits (755), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 186/600 (31%), Positives = 307/600 (51%), Gaps = 93/600 (15%)

Query: 4   RNHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARR 63
           +  P++ +    + I +  + G ++EA+ +F  M QR+VVS+N+M++G+ QNG++ EAR 
Sbjct: 164 KETPQTHLFQCNTRIQELGRLGRVEEARRVFNEMIQRDVVSWNSMINGYSQNGKVDEARL 223

Query: 64  LFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEA 123
           LF+    +N+ +WT ++ G A  GR+ EAR++FE M ERNVVSWN+M+ G ++NG+L  A
Sbjct: 224 LFDAFVGKNIRTWTILLTGYAKEGRIEEAREVFESMTERNVVSWNAMISGYVQNGDLKNA 283

Query: 124 RKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVE 183
           RK+F+ MP KNV SWN+++ GY  C  M EA  LF++M ERN V+W  MISGY    +  
Sbjct: 284 RKLFDEMPEKNVASWNSVVTGYCHCYRMSEARELFDQMPERNSVSWMVMISGYVHISDYW 343

Query: 184 EGYCLFRRMPRKN--------VVSWTAMIGGFAWNGFHKESLLLFIEMKGIC-DNGNNCN 234
           E + +F +M R          VV  +A+ G         + L L   ++ I    G   +
Sbjct: 344 EAWDVFVKMCRTVARPDQSIFVVVLSAITG--------LDDLELIGSLRPIAIKTGYEGD 395

Query: 235 VQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPD 294
           V   ++++N Y R G L+ A + F+T+P R+E SWT+MI  +   G++ +A  L+  +P+
Sbjct: 396 VVVGSAILNAYTRNGSLDLAMHFFETMPERNEYSWTTMIAAFAQCGRLDDAIQLYERVPE 455

Query: 295 R-------------------------------DAVAWTAMISGLVQNELFVEATYLF--- 320
           +                               + VAW A+I+G  QN +  EA  LF   
Sbjct: 456 QTVATKTAMMTAYAQVGRIQKARLIFDEILNPNVVAWNAIIAGYTQNGMLKEAKDLFQKM 515

Query: 321 ----------------------------MEMRAHGVPPLNATFSVLFGAAGATANIDLGR 352
                                       +E+   G  P +++F+    A     ++++GR
Sbjct: 516 PVKNSASWAAMIAGFVQNEESREALELLIELHRSGSVPSDSSFTSALSACANIGDVEIGR 575

Query: 353 QIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHG 412
            IH + +KT  + +  + N LISMYAKCG +++  ++F  +  +D VSWNS++ G S + 
Sbjct: 576 VIHSLAIKTGCQFNSYVMNGLISMYAKCGNVEDGSHVFRTIRVKDTVSWNSLISGLSENY 635

Query: 413 LANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHY 472
           + ++   VFE M +     + V++  I+SA   AG      +LF  M     I+P     
Sbjct: 636 MLDDARVVFEKMPKR----DVVSWTAIISAYVQAGHGEVALDLFLDML-ARGIKPNQLTV 690

Query: 473 VSMINLLGRAGKIKEAEEF---VLRLPFEPDHRIWGALLG---ACGFCEGNA---EIAEH 523
            S+++  G  G IK  E+F   + +L F+    +  +L+     CG+ +G     E+ EH
Sbjct: 691 TSLLSACGNLGAIKLGEQFHALIFKLGFDTFLFVGNSLITMYFKCGYEDGFCVFEEMPEH 750



 Score =  179 bits (454), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 119/435 (27%), Positives = 219/435 (50%), Gaps = 52/435 (11%)

Query: 97  EEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIV 156
           +E P+ ++   N+ +  L R G + EAR+VFN                            
Sbjct: 164 KETPQTHLFQCNTRIQELGRLGRVEEARRVFN---------------------------- 195

Query: 157 LFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKES 216
              EM +R+VV+W SMI+GY + G+V+E   LF     KN+ +WT ++ G+A  G  +E+
Sbjct: 196 ---EMIQRDVVSWNSMINGYSQNGKVDEARLLFDAFVGKNIRTWTILLTGYAKEGRIEEA 252

Query: 217 LLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGY 276
             +F  M          NV S N+MI+GY++ G L+ A+ LFD +P ++  SW S++ GY
Sbjct: 253 REVFESM-------TERNVVSWNAMISGYVQNGDLKNARKLFDEMPEKNVASWNSVVTGY 305

Query: 277 LSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFS 336
               ++S A  LF  MP+R++V+W  MISG V    + EA  +F++M      P  + F 
Sbjct: 306 CHCYRMSEARELFDQMPERNSVSWMVMISGYVHISDYWEAWDVFVKMCRTVARPDQSIFV 365

Query: 337 VLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSR 396
           V+  A     +++L   +  + +KT  E D+++ + +++ Y + G +D A + F  M  R
Sbjct: 366 VVLSAITGLDDLELIGSLRPIAIKTGYEGDVVVGSAILNAYTRNGSLDLAMHFFETMPER 425

Query: 397 DLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELF 456
           +  SW +M+  F+  G  ++ ++++E + E        T   +++A +  G + +   +F
Sbjct: 426 NEYSWTTMIAAFAQCGRLDDAIQLYERVPEQTV----ATKTAMMTAYAQVGRIQKARLIF 481

Query: 457 NAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEG 516
           + + +     P    + ++I    + G +KEA++   ++P + +   W A++   GF + 
Sbjct: 482 DEILN-----PNVVAWNAIIAGYTQNGMLKEAKDLFQKMPVK-NSASWAAMIA--GFVQN 533

Query: 517 NAEIAEHAAKRLLEL 531
             E +  A + L+EL
Sbjct: 534 --EESREALELLIEL 546


>gi|147841850|emb|CAN67319.1| hypothetical protein VITISV_039344 [Vitis vinifera]
          Length = 761

 Score =  373 bits (957), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 206/568 (36%), Positives = 329/568 (57%), Gaps = 48/568 (8%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWT 77
           I+   + G I+EA+ALF  MPQRN+V++N+M++G+++   +++AR+LF+EMP+R+VVSW 
Sbjct: 74  ISHLIRNGRINEARALFDAMPQRNIVTWNSMITGYVRRREMAKARKLFDEMPDRDVVSWN 133

Query: 78  AMICGLADA-GR-VCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNV 135
            MI G     GR V E R LF+EMPER+ VSWN+M+ G  R+G ++EA ++F+SM  +NV
Sbjct: 134 LMISGYVSCRGRWVEEGRHLFDEMPERDCVSWNTMISGYTRSGRMDEALQLFDSMQERNV 193

Query: 136 ISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRK 195
           +SWNAM+ G+++   +  AI  F  M ER+  + +++++G  + GE++E   +     R+
Sbjct: 194 VSWNAMVTGFLQNGDVERAIEFFMRMPERDSASLSALVAGLIQNGELDEAKRILLTTRRQ 253

Query: 196 N------VVSWTAMIGGFAWNGFHKESLLLFIEMK----GICDNGN-NCNVQSCNSMING 244
           +      V ++  ++ G+  NG   ++  LF ++     G  D G    NV S NSMI  
Sbjct: 254 DDDKGDLVHAYNILLAGYGQNGRVDKARQLFDQIPFYDGGQKDGGRFERNVVSWNSMIMC 313

Query: 245 YIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMI 304
           Y++   +  A+ LFD +  RD ISW +MI GY+ +  +  A+ LF  MP+ D + W +MI
Sbjct: 314 YVKARDIFSARVLFDQMKERDTISWNTMISGYVRMSDMEEAWMLFQEMPNPDTLTWNSMI 373

Query: 305 SGLVQ-------------------------------NELFVEATYLFMEMRAHGVPPLNA 333
           SG  Q                               N  +  AT L+ +M   G  P   
Sbjct: 374 SGFAQKGNLELARALFATIPQKNLVSWNSMIAGYENNGDYKGATELYRQMLLQGEKPDRH 433

Query: 334 TFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNM 393
           T S +       A + LG QIH  + KT    D+ + N LI+MY++CG I  A  IF  +
Sbjct: 434 TLSSVLSVCSGFAALHLGMQIHQQITKTVI-PDIPINNSLITMYSRCGAIVEARTIFDEV 492

Query: 394 -VSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRG 452
            + ++++SWN+M+ G++ HG A + L++FE M      P  +TF+ +L+AC+HAG V  G
Sbjct: 493 KLQKEVISWNAMIGGYAFHGFAADALELFELMKRLKVRPTYITFISVLNACAHAGXVKEG 552

Query: 453 WELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACG 512
              F +M   + I+P  EH+ S+++++GR G+++EA + +  +PFEPD  +WGALLGAC 
Sbjct: 553 RMHFKSMACEFGIEPRIEHFASLVDIVGRHGQLEEAMDLINSMPFEPDKAVWGALLGACR 612

Query: 513 FCEGNAEIAEHAAKRLLELDP-LNAPAH 539
               N E+A  AA+ L++L+P  +AP H
Sbjct: 613 -VHNNVELARVAAEALMKLEPESSAPCH 639



 Score =  192 bits (489), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 146/503 (29%), Positives = 214/503 (42%), Gaps = 118/503 (23%)

Query: 7   PKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFE 66
           P+   V   + I+ Y++ G +DEA  LF  M +RNVVS+NAM++GFLQNG +  A   F 
Sbjct: 158 PERDCVSWNTMISGYTRSGRMDEALQLFDSMQERNVVSWNAMVTGFLQNGDVERAIEFFM 217

Query: 67  EMPERNVVSWTAMICGL-------------------------------------ADAGRV 89
            MPER+  S +A++ GL                                        GRV
Sbjct: 218 RMPERDSASLSALVAGLIQNGELDEAKRILLTTRRQDDDKGDLVHAYNILLAGYGQNGRV 277

Query: 90  CEARKLFEEMP------------ERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVIS 137
            +AR+LF+++P            ERNVVSWNSM++  ++  ++  AR +F+ M  ++ IS
Sbjct: 278 DKARQLFDQIPFYDGGQKDGGRFERNVVSWNSMIMCYVKARDIFSARVLFDQMKERDTIS 337

Query: 138 WNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNV 197
           WN MI+GYV    M EA +LF+EM   + +TW SMISG+ + G +E    LF  +P+KN+
Sbjct: 338 WNTMISGYVRMSDMEEAWMLFQEMPNPDTLTWNSMISGFAQKGNLELARALFATIPQKNL 397

Query: 198 VSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSC------------------- 238
           VSW +MI G+  NG +K +  L+ +M    +  +   + S                    
Sbjct: 398 VSWNSMIAGYENNGDYKGATELYRQMLLQGEKPDRHTLSSVLSVCSGFAALHLGMQIHQQ 457

Query: 239 ------------NSMINGYIRFGRLEEAQNLFDTVPVRDE-ISWTSMIDGYLSVGQVSNA 285
                       NS+I  Y R G + EA+ +FD V ++ E ISW +MI GY   G  ++A
Sbjct: 458 ITKTVIPDIPINNSLITMYSRCGAIVEARTIFDEVKLQKEVISWNAMIGGYAFHGFAADA 517

Query: 286 YYLFHNMPDRDA----VAWTAMISGLVQNELFVEATYLFMEMRA---------------- 325
             LF  M         + + ++++         E    F  M                  
Sbjct: 518 LELFELMKRLKVRPTYITFISVLNACAHAGXVKEGRMHFKSMACEFGIEPRIEHFASLVD 577

Query: 326 ----HG-------------VPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLI 368
               HG               P  A +  L GA     N++L R     LMK E ES   
Sbjct: 578 IVGRHGQLEEAMDLINSMPFEPDKAVWGALLGACRVHNNVELARVAAEALMKLEPESSAP 637

Query: 369 LENCLISMYAKCGVIDNAYNIFS 391
                      C      YN F 
Sbjct: 638 CHGLRERQLLTCKEKGKGYNSFD 660



 Score =  141 bits (356), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 113/432 (26%), Positives = 191/432 (44%), Gaps = 55/432 (12%)

Query: 165 NVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEM- 223
           ++ T    IS   R G + E   LF  MP++N+V+W +MI G+       ++  LF EM 
Sbjct: 66  DLYTPNKRISHLIRNGRINEARALFDAMPQRNIVTWNSMITGYVRRREMAKARKLFDEMP 125

Query: 224 -------------------------KGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLF 258
                                    + + D     +  S N+MI+GY R GR++EA  LF
Sbjct: 126 DRDVVSWNLMISGYVSCRGRWVEEGRHLFDEMPERDCVSWNTMISGYTRSGRMDEALQLF 185

Query: 259 DTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATY 318
           D++  R+ +SW +M+ G+L  G V  A   F  MP+RD+ + +A+++GL+QN    EA  
Sbjct: 186 DSMQERNVVSWNAMVTGFLQNGDVERAIEFFMRMPERDSASLSALVAGLIQNGELDEAKR 245

Query: 319 LFMEMRAHGVPP--LNATFSVLFGAAGATANIDLGRQIHCVLMKTES--------ESDLI 368
           + +  R        L   +++L    G    +D  RQ+   +   +         E +++
Sbjct: 246 ILLTTRRQDDDKGDLVHAYNILLAGYGQNGRVDKARQLFDQIPFYDGGQKDGGRFERNVV 305

Query: 369 LENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESG 428
             N +I  Y K   I +A  +F  M  RD +SWN+M+ G+       E   +F+ M    
Sbjct: 306 SWNSMIMCYVKARDIFSARVLFDQMKERDTISWNTMISGYVRMSDMEEAWMLFQEM---- 361

Query: 429 THPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEA 488
            +P+++T+  ++S  +  G +    EL  A+F     Q     + SMI      G  K A
Sbjct: 362 PNPDTLTWNSMISGFAQKGNL----ELARALFATIP-QKNLVSWNSMIAGYENNGDYKGA 416

Query: 489 EEFVLRLPFE---PDHRIWGALLGAC-GFCEGN--AEIAEHAAKRLLELDPLNAPAHVVL 542
            E   ++  +   PD     ++L  C GF   +   +I +   K ++   P+N      L
Sbjct: 417 TELYRQMLLQGEKPDRHTLSSVLSVCSGFAALHLGMQIHQQITKTVIPDIPINNS----L 472

Query: 543 CNIYAASGRHVE 554
             +Y+  G  VE
Sbjct: 473 ITMYSRCGAIVE 484



 Score =  108 bits (271), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 80/278 (28%), Positives = 125/278 (44%), Gaps = 58/278 (20%)

Query: 229 NGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYL 288
           N  + ++ + N  I+  IR GR+ EA+ LFD +P R+ ++W SMI GY+   +++ A  L
Sbjct: 61  NSVSLDLYTPNKRISHLIRNGRINEARALFDAMPQRNIVTWNSMITGYVRRREMAKARKL 120

Query: 289 FHNMPDRDAVAWTAMISGLV--QNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATA 346
           F  MPDRD V+W  MISG V  +     E  +LF EM                       
Sbjct: 121 FDEMPDRDVVSWNLMISGYVSCRGRWVEEGRHLFDEM----------------------- 157

Query: 347 NIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVM 406
                            E D +  N +IS Y + G +D A  +F +M  R++VSWN+MV 
Sbjct: 158 ----------------PERDCVSWNTMISGYTRSGRMDEALQLFDSMQERNVVSWNAMVT 201

Query: 407 GFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNA---MFDVY 463
           GF  +G     ++ F  M E     +S +   ++     AGL+  G EL  A   +    
Sbjct: 202 GFLQNGDVERAIEFFMRMPER----DSASLSALV-----AGLIQNG-ELDEAKRILLTTR 251

Query: 464 KIQPGPEHYVSMINLL----GRAGKIKEAEEFVLRLPF 497
           +        V   N+L    G+ G++ +A +   ++PF
Sbjct: 252 RQDDDKGDLVHAYNILLAGYGQNGRVDKARQLFDQIPF 289



 Score = 48.9 bits (115), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 51/217 (23%), Positives = 92/217 (42%), Gaps = 45/217 (20%)

Query: 347 NIDLGRQIHCVLMKTESES-----DLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSW 401
           N+     +HC +   +        DL   N  IS   + G I+ A  +F  M  R++V+W
Sbjct: 42  NLSPPPHLHCFVSTLQQPKNSVSLDLYTPNKRISHLIRNGRINEARALFDAMPQRNIVTW 101

Query: 402 NSMVMGFSHHGLANETLKVFESM----------------------LESGTH-------PN 432
           NSM+ G+       +  K+F+ M                      +E G H        +
Sbjct: 102 NSMITGYVRRREMAKARKLFDEMPDRDVVSWNLMISGYVSCRGRWVEEGRHLFDEMPERD 161

Query: 433 SVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFV 492
            V++  ++S  + +G +    +LF++M +   +      + +M+    + G ++ A EF 
Sbjct: 162 CVSWNTMISGYTRSGRMDEALQLFDSMQERNVVS-----WNAMVTGFLQNGDVERAIEFF 216

Query: 493 LRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLL 529
           +R+P E D     AL+   G  + N E+ E  AKR+L
Sbjct: 217 MRMP-ERDSASLSALVA--GLIQ-NGELDE--AKRIL 247


>gi|302791503|ref|XP_002977518.1| hypothetical protein SELMODRAFT_107192 [Selaginella moellendorffii]
 gi|300154888|gb|EFJ21522.1| hypothetical protein SELMODRAFT_107192 [Selaginella moellendorffii]
          Length = 652

 Score =  373 bits (957), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 187/583 (32%), Positives = 323/583 (55%), Gaps = 44/583 (7%)

Query: 21  YSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMI 80
           + + G ++ A+ +F  +  R+  S+  MLS + ++G LS A+ +F+ MP  ++ SWTA++
Sbjct: 2   FGRLGCVERARQIFDAIADRDSFSWGIMLSIYARSGDLSNAKGVFDRMPRWSLGSWTALL 61

Query: 81  CGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNA 140
              A +G   EA+ LF+ M ER++++W  M+  L     + +A+  F+ MP +++++W A
Sbjct: 62  SAFALSGHHEEAKTLFDTMQERDLIAWTIMLTVLATFSNIEDAKYHFDQMPERDLVAWTA 121

Query: 141 MIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSW 200
           M+A   E   M  A   F++M ERN+ +WTS++S Y R+G+V+    +F  MP  N+V+W
Sbjct: 122 MLAANAERGQMENARETFDQMPERNLFSWTSLLSAYGRSGDVKAAGRVFDSMPEWNLVAW 181

Query: 201 TAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDT 260
           TAM+                                       GY   G +  A+  FD+
Sbjct: 182 TAML--------------------------------------TGYSLSGDVVRAKRAFDS 203

Query: 261 VPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLF 320
           +P RD I+WT+M+  Y   G +     +F  MP+RD ++W  M++ LV+N+L  E+  LF
Sbjct: 204 MPERDLIAWTAMLSAYAFNGHLRYTREIFQRMPERDLISWATMVAALVENDLLEESKELF 263

Query: 321 MEMRAH-----GVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLIS 375
             M  H     G+ P   TF  L  A      +  GR+IH  + +   ++DL++ N L++
Sbjct: 264 DRMPRHCALSKGMTPNRVTFITLLDACSFLGALAEGRKIHAAVAERGFDTDLVVSNALVN 323

Query: 376 MYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVT 435
            Y +CG + +A  +F  M  RD++SW+SM+  F+  G  +E ++++  ML  GT P+ + 
Sbjct: 324 FYGRCGALGDAKIVFDGMRRRDVISWSSMISAFAQRGRVDEAMELYHRMLSEGTLPDDII 383

Query: 436 FLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRL 495
           F+ +L ACS++G+V    + F ++    +++P  EHY  M+++LGRAGK+++AE+ +  +
Sbjct: 384 FISVLFACSNSGVVEASGDFFRSIVGDTQVEPTLEHYACMVDVLGRAGKLRDAEDLLRLM 443

Query: 496 PFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEE 555
           PF P   ++  +L AC     + E  E AA+ + ELDP N+  ++ L NIY+A+ R  + 
Sbjct: 444 PFHPGPLLYMTMLSACKLYT-DVERGEAAAEVVFELDPENSSPYITLANIYSAAKRPKDA 502

Query: 556 HKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
            ++R  M  +G++K PGCSW+     +  F++GDK+  Q  EI
Sbjct: 503 ARIRKLMEERGIKKKPGCSWIEVLDRVHEFIAGDKMHPQRDEI 545



 Score =  209 bits (533), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 130/481 (27%), Positives = 235/481 (48%), Gaps = 43/481 (8%)

Query: 15  TSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVV 74
           T+ ++ ++  G  +EAK LF  M +R+++++  ML+       + +A+  F++MPER++V
Sbjct: 58  TALLSAFALSGHHEEAKTLFDTMQERDLIAWTIMLTVLATFSNIEDAKYHFDQMPERDLV 117

Query: 75  SWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKN 134
           +WTAM+   A+ G++  AR+ F++MPERN+ SW S++    R+G++  A +VF+SMP  N
Sbjct: 118 AWTAMLAANAERGQMENARETFDQMPERNLFSWTSLLSAYGRSGDVKAAGRVFDSMPEWN 177

Query: 135 VISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPR 194
           +++W AM+ GY     +  A   F+ M ER+++ WT+M+S Y   G +     +F+RMP 
Sbjct: 178 LVAWTAMLTGYSLSGDVVRAKRAFDSMPERDLIAWTAMLSAYAFNGHLRYTREIFQRMPE 237

Query: 195 KNVVSWTAMIGGFAWNGFHKESLLLFIEMKGIC--DNGNNCNVQSCNSMINGYIRFGRLE 252
           ++++SW  M+     N   +ES  LF  M   C    G   N  +  ++++     G L 
Sbjct: 238 RDLISWATMVAALVENDLLEESKELFDRMPRHCALSKGMTPNRVTFITLLDACSFLGALA 297

Query: 253 EAQNLFDTVPVR----DEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLV 308
           E + +   V  R    D +   ++++ Y   G + +A  +F  M  RD ++W++MIS   
Sbjct: 298 EGRKIHAAVAERGFDTDLVVSNALVNFYGRCGALGDAKIVFDGMRRRDVISWSSMISAFA 357

Query: 309 QNELFVEATYLFMEMRAHGVPPLNATF-SVLFGAAGATANIDLGRQIHCVLMKTESESDL 367
           Q     EA  L+  M + G  P +  F SVLF  + +      G     ++  T+ E  L
Sbjct: 358 QRGRVDEAMELYHRMLSEGTLPDDIIFISVLFACSNSGVVEASGDFFRSIVGDTQVEPTL 417

Query: 368 ILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLES 427
               C++ +  + G + +A ++               +M F                   
Sbjct: 418 EHYACMVDVLGRAGKLRDAEDLLR-------------LMPF------------------- 445

Query: 428 GTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKE 487
             HP  + ++ +LSAC     V RG      +F++      P  Y+++ N+   A + K+
Sbjct: 446 --HPGPLLYMTMLSACKLYTDVERGEAAAEVVFELDPENSSP--YITLANIYSAAKRPKD 501

Query: 488 A 488
           A
Sbjct: 502 A 502



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 74/261 (28%), Positives = 136/261 (52%), Gaps = 44/261 (16%)

Query: 7   PKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFE 66
           P+  +V  T+ +   ++RG ++ A+  F  MP+RN+ S+ ++LS + ++G +  A R+F+
Sbjct: 112 PERDLVAWTAMLAANAERGQMENARETFDQMPERNLFSWTSLLSAYGRSGDVKAAGRVFD 171

Query: 67  EMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKV 126
            MPE N+V+WTAM+ G + +G V  A++ F+ MPER++++W +M+     NG L   R++
Sbjct: 172 SMPEWNLVAWTAMLTGYSLSGDVVRAKRAFDSMPERDLIAWTAMLSAYAFNGHLRYTREI 231

Query: 127 FNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEME------------------------ 162
           F  MP +++ISW  M+A  VE  ++ E+  LF+ M                         
Sbjct: 232 FQRMPERDLISWATMVAALVENDLLEESKELFDRMPRHCALSKGMTPNRVTFITLLDACS 291

Query: 163 --------------------ERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTA 202
                               + ++V   ++++ Y R G + +   +F  M R++V+SW++
Sbjct: 292 FLGALAEGRKIHAAVAERGFDTDLVVSNALVNFYGRCGALGDAKIVFDGMRRRDVISWSS 351

Query: 203 MIGGFAWNGFHKESLLLFIEM 223
           MI  FA  G   E++ L+  M
Sbjct: 352 MISAFAQRGRVDEAMELYHRM 372


>gi|242092520|ref|XP_002436750.1| hypothetical protein SORBIDRAFT_10g008110 [Sorghum bicolor]
 gi|241914973|gb|EER88117.1| hypothetical protein SORBIDRAFT_10g008110 [Sorghum bicolor]
          Length = 672

 Score =  373 bits (957), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 212/616 (34%), Positives = 338/616 (54%), Gaps = 43/616 (6%)

Query: 7   PKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGF---LQNGRLSEARR 63
           P   VV   S +   S+R  +  A++ F  MP R+++S+N +L+ +   LQ   L+ ARR
Sbjct: 63  PARSVVTWNSFLAALSRRRDVRAARSFFDAMPMRDIISWNTLLAAYARSLQPDHLAAARR 122

Query: 64  LFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEA 123
           LF+EMP+R+ VSW+ ++      G + EA++LF+EMP RN  SWN+MV G    G++ +A
Sbjct: 123 LFDEMPQRDAVSWSTLLGAYTRRGLMEEAQRLFDEMPHRNPASWNTMVTGFFAIGQMRKA 182

Query: 124 RKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEE----ME-ERNVVTWTSMISGYCR 178
             VF +MP+K+  S +AM++G++    + EA  L  +    M+ ++ V  + ++I+ Y +
Sbjct: 183 LNVFEAMPVKDSASLSAMVSGFIRNGWLHEADELLTKRLRAMDMDKAVDAFNTLIAAYGQ 242

Query: 179 AGEVEEGYCLFRRMPR--------------KNVVSWTAMIGGFAWNGFHKESLLLFIEMK 224
            G V +   LF  +P+              +NVVSW +M+  +   G    +  LF EM 
Sbjct: 243 TGRVTDARRLFSMIPKTQSQHKGHKRRVFERNVVSWNSMMMCYIRTGDVCSARALFDEMP 302

Query: 225 GICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSN 284
                    ++ + N+MI GY +   +EEA+ LF  VP  D ++W  MI G+   G V +
Sbjct: 303 F-------KDLVTWNTMIAGYTQASDMEEAEKLFGEVPAPDAVTWNLMIRGFTQKGDVEH 355

Query: 285 AYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGA 344
           A   F  MP++  + W  MISG  QNE +     LF  M             V+  A  +
Sbjct: 356 ARGFFDRMPEQSTITWNTMISGYEQNEDYDCTIKLFQRM-----------LEVVLAACAS 404

Query: 345 TANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNM-VSRDLVSWNS 403
            A + LG Q+H ++ K+    D    N L++MY++CG + +A  IFS M   +DLVSWN+
Sbjct: 405 LAMLRLGAQLHQLIEKS-FLPDTATNNALMTMYSRCGELTSAKAIFSQMHTQKDLVSWNA 463

Query: 404 MVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVY 463
           ++ G+ HHG A E L++F+ M  +   P  +TF+ +LSAC +AGLVS G  +F+ M   Y
Sbjct: 464 LIGGYEHHGNATEALRLFQEMRSAKVMPTHITFISLLSACGNAGLVSEGQVVFHTMVHEY 523

Query: 464 KIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEH 523
            + P  EHY +++NL+GR G++++A E +  +P  PD  +WGA LGAC   + N  +A  
Sbjct: 524 GLAPRVEHYAALVNLIGRHGQLEDALEVIKSMPIAPDRAVWGAFLGACT-AKKNEVLAAV 582

Query: 524 AAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQ 583
           AA  L ++DP ++  +V++ N++A  GR      +R DM   G+ K PG SW+  +  + 
Sbjct: 583 AANALSKIDPESSAPYVLMHNLHAHEGRWGSASVVREDMERLGIHKHPGYSWIDLHDKVH 642

Query: 584 MFLSGDKIPAQVAEIL 599
           +F+SGD       EI 
Sbjct: 643 VFISGDTSHPLTQEIF 658


>gi|125560040|gb|EAZ05488.1| hypothetical protein OsI_27705 [Oryza sativa Indica Group]
          Length = 1165

 Score =  372 bits (956), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 214/608 (35%), Positives = 320/608 (52%), Gaps = 66/608 (10%)

Query: 13  HLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERN 72
           HL + +T Y +RG + +A+ LF  MP R+V+S+ A+L+ +   G L+ AR +F++MP RN
Sbjct: 40  HLNALLTSYGRRGRLRDAQLLFDQMPSRDVISWTALLTAYADGGDLASARLVFDDMPRRN 99

Query: 73  VVSWTAM-------------------------------ICGLADAGRVCEARKLFEEMPE 101
             SW A+                               I GLA A  + EA  ++EEMP 
Sbjct: 100 APSWNALLSVYLRAARPRAAHALFYKMPAKNAVSYGAIISGLAKAEMLHEAELVYEEMPW 159

Query: 102 --RNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFE 159
             R+ V  N+++ G +R GEL  A +VF  M +++VISW+AM+ G  +   + EA  +F+
Sbjct: 160 QWRDPVGSNALMAGYLRVGELAMALRVFEGMTVRDVISWSAMVDGLCKHGSVSEARRVFD 219

Query: 160 EMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIG-------------- 205
            M ERNVV+WTSMI GY + G   +G  LF  M R+ V   T  +               
Sbjct: 220 AMPERNVVSWTSMIRGYVKRGMCRDGLLLFLNMRREGVQVNTTTLSVALDACAAASLARE 279

Query: 206 -----------GFAWNGFHKESLLLF-------IEMKGICDNGNNCNVQSCNSMINGYIR 247
                      GF  + F  +S+++        ++ K   D     ++ S NS+I GY++
Sbjct: 280 GIQIHNLIISMGFELDIFLGDSIIIMYSRFGCMVDAKRAFDCMQQKDIVSWNSLITGYVQ 339

Query: 248 FGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGL 307
              +EEA  LF  +  +D +SWTSM+ G+ + G +  +  LF  MP +D VAWTA+IS  
Sbjct: 340 HDMVEEAHVLFKLMHQKDAVSWTSMVVGFANRGWMRESVELFEQMPVKDEVAWTAIISSF 399

Query: 308 VQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDL 367
           + N  ++ A   F  M   G  P    FS L  A  + A ++ GRQ H   +      D 
Sbjct: 400 ITNGDYLSAVRWFCRMSQEGCKPNTIAFSCLLSALASLAMLNQGRQAHAYSINMGWVFDS 459

Query: 368 ILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLES 427
            +   L+SMYAKCG +  AY++FS++ +  L++ NSM+  F  HG   + LK+F  M  +
Sbjct: 460 AVHTSLVSMYAKCGRLAEAYHVFSSISNPSLIAINSMITAFVQHGFVEDALKLFTKMQNA 519

Query: 428 GTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKE 487
           G  PN VTFLGIL+ C+ AG V +G+  F +M  VY ++P PEHY  M++LLGRAG + E
Sbjct: 520 GYKPNHVTFLGILTGCARAGFVQQGYNYFESMRPVYGVEPNPEHYTCMVDLLGRAGLLAE 579

Query: 488 AEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYA 547
           A E +  +P       W ALL A      N   A+ AA++LLE DP +A A+ VL  +++
Sbjct: 580 ALEMINSMPQNDHSDAWAALLSASSL-HSNLAFAKIAAQKLLEKDPYDATAYTVLSRMFS 638

Query: 548 ASGRHVEE 555
           ++G   EE
Sbjct: 639 SAGMEDEE 646


>gi|125602089|gb|EAZ41414.1| hypothetical protein OsJ_25936 [Oryza sativa Japonica Group]
          Length = 1165

 Score =  372 bits (956), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 214/608 (35%), Positives = 320/608 (52%), Gaps = 66/608 (10%)

Query: 13  HLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERN 72
           HL + +T Y +RG + +A+ LF  MP R+V+S+ A+L+ +   G L+ AR +F++MP RN
Sbjct: 40  HLNALLTSYGRRGRLRDAQLLFDQMPSRDVISWTALLTAYADGGDLASARLVFDDMPRRN 99

Query: 73  VVSWTAM-------------------------------ICGLADAGRVCEARKLFEEMPE 101
             SW A+                               I GLA A  + EA  ++EEMP 
Sbjct: 100 APSWNALLSVYLRAARPRAAHALFYKMPAKNAVSYGAIISGLAKAEMLHEAELVYEEMPW 159

Query: 102 --RNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFE 159
             R+ V  N+++ G +R GEL  A +VF  M +++VISW+AM+ G  +   + EA  +F+
Sbjct: 160 QWRDPVGSNALMAGYLRVGELAMALRVFEGMTVRDVISWSAMVDGLCKHGSVSEARRVFD 219

Query: 160 EMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIG-------------- 205
            M ERNVV+WTSMI GY + G   +G  LF  M R+ V   T  +               
Sbjct: 220 AMPERNVVSWTSMIRGYVKRGMCRDGLLLFLNMRREGVQVNTTTLSVALDACAAASLARE 279

Query: 206 -----------GFAWNGFHKESLLLF-------IEMKGICDNGNNCNVQSCNSMINGYIR 247
                      GF  + F  +S+++        ++ K   D     ++ S NS+I GY++
Sbjct: 280 GIQIHNLIISMGFELDIFLGDSIIIMYSRFGWMVDAKRAFDCMQQKDIVSWNSLITGYVQ 339

Query: 248 FGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGL 307
              +EEA  LF  +  +D +SWTSM+ G+ + G +  +  LF  MP +D VAWTA+IS  
Sbjct: 340 HDMVEEAHVLFKLMHQKDAVSWTSMVVGFANRGWMRESVELFEQMPVKDEVAWTAIISSF 399

Query: 308 VQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDL 367
           + N  ++ A   F  M   G  P    FS L  A  + A ++ GRQ H   +      D 
Sbjct: 400 ITNGDYLSAVRWFCRMSQEGCKPNTIAFSCLLSALASLAMLNQGRQAHAYSINMGWVFDS 459

Query: 368 ILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLES 427
            +   L+SMYAKCG +  AY++FS++ +  L++ NSM+  F  HG   + LK+F  M  +
Sbjct: 460 AVHTSLVSMYAKCGRLAEAYHVFSSISNPSLIAINSMITAFVQHGFVEDALKLFTKMQNA 519

Query: 428 GTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKE 487
           G  PN VTFLGIL+ C+ AG V +G+  F +M  VY ++P PEHY  M++LLGRAG + E
Sbjct: 520 GYKPNHVTFLGILTGCARAGFVQQGYNYFESMRPVYGVEPNPEHYTCMVDLLGRAGLLAE 579

Query: 488 AEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYA 547
           A E +  +P       W ALL A      N   A+ AA++LLE DP +A A+ VL  +++
Sbjct: 580 ALEMINSMPQNDHSDAWAALLSASSL-HSNLAFAKIAAQKLLEKDPYDATAYTVLSRMFS 638

Query: 548 ASGRHVEE 555
           ++G   EE
Sbjct: 639 SAGMEDEE 646


>gi|242082435|ref|XP_002445986.1| hypothetical protein SORBIDRAFT_07g029130 [Sorghum bicolor]
 gi|241942336|gb|EES15481.1| hypothetical protein SORBIDRAFT_07g029130 [Sorghum bicolor]
          Length = 567

 Score =  372 bits (955), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 198/566 (34%), Positives = 314/566 (55%), Gaps = 42/566 (7%)

Query: 37  MPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGR--VCEARK 94
           +  R ++  N  +S   + G ++ ARR+F+ MP R+VVSW A++  L  AGR  +  AR+
Sbjct: 10  LAARRLLRDNQRISALARAGDVAAARRVFDAMPHRDVVSWNALLTALWRAGRHHLPAARR 69

Query: 95  LFEE-MPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGE 153
           LF+E MP R+VVSWNS++ G + +G+L+ A   F   P +NV +WNAM+AG +      +
Sbjct: 70  LFDEAMPSRDVVSWNSIIAGCLAHGDLDAASAYFAGAPKRNVATWNAMLAGLLRLGRADD 129

Query: 154 AIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFH 213
           A  LF EM +RNVV++T+M+ G  R GEV     +F  MP +N+VSW AMI         
Sbjct: 130 ADRLFGEMPKRNVVSYTTMVDGLARRGEVARAREVFDAMPDRNLVSWAAMI--------- 180

Query: 214 KESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMI 273
                                        +GY+  G   EA  LF+ +P ++ ++ T+MI
Sbjct: 181 -----------------------------SGYVENGMFVEATKLFEAMPEKNVVACTAMI 211

Query: 274 DGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNA 333
             Y   G V +A  LF  +  +D ++W  MI+G V N    EA  L   M   GV P +A
Sbjct: 212 TSYCKQGDVESARRLFDGIRAKDVISWNTMIAGYVHNGHGEEAMRLHAVMFREGVKPDHA 271

Query: 334 TFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNM 393
           T   +  A  A A +  G+  H + +K   ES +   N L++MY+KCG +  +  +F N+
Sbjct: 272 TLIAVLTACSALALLRQGKSTHAIAIKAMLESGISFSNALMTMYSKCGNVGESELVFINL 331

Query: 394 VSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGW 453
            ++D+VSWN+++  ++ HG   + + +F  M  +G  P+ +TFL +LSAC H G V    
Sbjct: 332 RTKDIVSWNTIIAAYAQHGKYQKVIALFHEMEMTGLIPDDITFLSVLSACGHVGKVDASL 391

Query: 454 ELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGF 513
           +LF+ M   Y I P  EHY  ++++L RAG++++A  ++  +P E +  +WG+LLGAC  
Sbjct: 392 KLFDLMSSKYAISPRAEHYACIVDILSRAGQLEKASSYIKDMPLEAEKNVWGSLLGACQM 451

Query: 514 CEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGC 573
             GN ++ E AAK L++ D  ++  +V+L NIYAA+G   + +++R  M  +GV+K PG 
Sbjct: 452 -HGNVQLGELAAKMLVQSDSESSGPYVILSNIYAAAGMWGQVNQVRGQMKERGVKKQPGY 510

Query: 574 SWLMRNGGIQMFLSGDKIPAQVAEIL 599
           SW      + MF+ GD    ++ +I+
Sbjct: 511 SWTEIANEVHMFVGGDASHPEMRKII 536



 Score =  219 bits (557), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 136/397 (34%), Positives = 220/397 (55%), Gaps = 12/397 (3%)

Query: 24  RGFIDEAKALF-QLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICG 82
           R  +  A+ LF + MP R+VVS+N++++G L +G L  A   F   P+RNV +W AM+ G
Sbjct: 61  RHHLPAARRLFDEAMPSRDVVSWNSIIAGCLAHGDLDAASAYFAGAPKRNVATWNAMLAG 120

Query: 83  LADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMI 142
           L   GR  +A +LF EMP+RNVVS+ +MV GL R GE+  AR+VF++MP +N++SW AMI
Sbjct: 121 LLRLGRADDADRLFGEMPKRNVVSYTTMVDGLARRGEVARAREVFDAMPDRNLVSWAAMI 180

Query: 143 AGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTA 202
           +GYVE  M  EA  LFE M E+NVV  T+MI+ YC+ G+VE    LF  +  K+V+SW  
Sbjct: 181 SGYVENGMFVEATKLFEAMPEKNVVACTAMITSYCKQGDVESARRLFDGIRAKDVISWNT 240

Query: 203 MIGGFAWNGFHKESLLLFIEM--KGI-CDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFD 259
           MI G+  NG  +E++ L   M  +G+  D+     V +  S +   +R G+   A  +  
Sbjct: 241 MIAGYVHNGHGEEAMRLHAVMFREGVKPDHATLIAVLTACSAL-ALLRQGKSTHAIAI-- 297

Query: 260 TVPVRDEISWT-SMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATY 318
              +   IS++ +++  Y   G V  +  +F N+  +D V+W  +I+   Q+  + +   
Sbjct: 298 KAMLESGISFSNALMTMYSKCGNVGESELVFINLRTKDIVSWNTIIAAYAQHGKYQKVIA 357

Query: 319 LFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILEN--CLISM 376
           LF EM   G+ P + TF  +  A G    +D   ++   LM ++       E+  C++ +
Sbjct: 358 LFHEMEMTGLIPDDITFLSVLSACGHVGKVDASLKLFD-LMSSKYAISPRAEHYACIVDI 416

Query: 377 YAKCGVIDNAYNIFSNM-VSRDLVSWNSMVMGFSHHG 412
            ++ G ++ A +   +M +  +   W S++     HG
Sbjct: 417 LSRAGQLEKASSYIKDMPLEAEKNVWGSLLGACQMHG 453


>gi|413925171|gb|AFW65103.1| hypothetical protein ZEAMMB73_773985 [Zea mays]
          Length = 567

 Score =  371 bits (953), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 198/566 (34%), Positives = 318/566 (56%), Gaps = 42/566 (7%)

Query: 37  MPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGR--VCEARK 94
           +  R ++  N  +S   + G ++ ARR+F+ M  R+VVSW A++  L  AGR  +  AR+
Sbjct: 10  LAARRLLRDNQRISALARAGDVAAARRVFDAMTHRDVVSWNALLTALWRAGRHHLPAARR 69

Query: 95  LFEE-MPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGE 153
           LF+E MP R+VVSWNS++ G + +G+L+ A   F   P +NV +WNAM+AG V    + +
Sbjct: 70  LFDEAMPSRDVVSWNSIIAGCLAHGDLDAASAYFAGAPERNVATWNAMLAGLVRLGRVVD 129

Query: 154 AIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFH 213
           A  LF+EM ERNVV++T+M+    R GEVE    +F  MP +N+VSW AM          
Sbjct: 130 AQRLFDEMPERNVVSYTTMVDWLARRGEVERAREVFDSMPDRNLVSWAAM---------- 179

Query: 214 KESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMI 273
                                       I+G +  G   EA+ LF+ +P ++ ++ T+MI
Sbjct: 180 ----------------------------ISGCVENGMFVEARELFEAMPEKNVVACTAMI 211

Query: 274 DGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNA 333
            G+   G V +A  LF  +  +D ++W AMI+G V N    EA  L   M   GV P +A
Sbjct: 212 TGHCKQGDVDSARRLFDGIRAKDVISWNAMIAGYVHNGHGEEAMRLHALMFREGVKPDHA 271

Query: 334 TFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNM 393
           T   +  A  A A +  G+  H + +K   ES +   N L++MY+KCG +  +  +F N+
Sbjct: 272 TLIAVLTACSALALLRQGKSTHAIAIKAMLESGISFSNALMTMYSKCGNVGESELVFINL 331

Query: 394 VSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGW 453
            ++D+VSWN+++  ++ HG   + + +F  M  +G  P+ +TFL +LSAC H G+V    
Sbjct: 332 RTKDIVSWNTIIAAYAQHGKYQKVIALFHEMEVTGLIPDDITFLSVLSACGHVGMVDASL 391

Query: 454 ELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGF 513
           +LF+ M   Y I P  EHY  ++++L RAG++++A  ++  +P + +  +WG+LLGAC  
Sbjct: 392 KLFDLMSSKYAISPRAEHYACIVDILSRAGQLEKASSYIKHMPLKAEKNVWGSLLGACQI 451

Query: 514 CEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGC 573
             GN ++ E AAK L++ D  ++  +V+L NIYAA+G   + +++R  M  +GV+K PG 
Sbjct: 452 -HGNVQLGELAAKMLVQSDSQSSGPYVILSNIYAAAGMWGQVNQIRGQMKERGVKKQPGY 510

Query: 574 SWLMRNGGIQMFLSGDKIPAQVAEIL 599
           SW      + MF+ GD    ++ +I+
Sbjct: 511 SWTEIGNEVHMFVGGDASHPEMRKII 536



 Score =  219 bits (559), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 138/397 (34%), Positives = 223/397 (56%), Gaps = 12/397 (3%)

Query: 24  RGFIDEAKALF-QLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICG 82
           R  +  A+ LF + MP R+VVS+N++++G L +G L  A   F   PERNV +W AM+ G
Sbjct: 61  RHHLPAARRLFDEAMPSRDVVSWNSIIAGCLAHGDLDAASAYFAGAPERNVATWNAMLAG 120

Query: 83  LADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMI 142
           L   GRV +A++LF+EMPERNVVS+ +MV  L R GE+  AR+VF+SMP +N++SW AMI
Sbjct: 121 LVRLGRVVDAQRLFDEMPERNVVSYTTMVDWLARRGEVERAREVFDSMPDRNLVSWAAMI 180

Query: 143 AGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTA 202
           +G VE  M  EA  LFE M E+NVV  T+MI+G+C+ G+V+    LF  +  K+V+SW A
Sbjct: 181 SGCVENGMFVEARELFEAMPEKNVVACTAMITGHCKQGDVDSARRLFDGIRAKDVISWNA 240

Query: 203 MIGGFAWNGFHKESLLLFIEM--KGI-CDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFD 259
           MI G+  NG  +E++ L   M  +G+  D+     V +  S +   +R G+   A  +  
Sbjct: 241 MIAGYVHNGHGEEAMRLHALMFREGVKPDHATLIAVLTACSAL-ALLRQGKSTHAIAI-- 297

Query: 260 TVPVRDEISWT-SMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATY 318
              +   IS++ +++  Y   G V  +  +F N+  +D V+W  +I+   Q+  + +   
Sbjct: 298 KAMLESGISFSNALMTMYSKCGNVGESELVFINLRTKDIVSWNTIIAAYAQHGKYQKVIA 357

Query: 319 LFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILEN--CLISM 376
           LF EM   G+ P + TF  +  A G    +D   ++   LM ++       E+  C++ +
Sbjct: 358 LFHEMEVTGLIPDDITFLSVLSACGHVGMVDASLKLFD-LMSSKYAISPRAEHYACIVDI 416

Query: 377 YAKCGVIDNAYNIFSNM-VSRDLVSWNSMVMGFSHHG 412
            ++ G ++ A +   +M +  +   W S++     HG
Sbjct: 417 LSRAGQLEKASSYIKHMPLKAEKNVWGSLLGACQIHG 453


>gi|224116778|ref|XP_002331875.1| predicted protein [Populus trichocarpa]
 gi|222875393|gb|EEF12524.1| predicted protein [Populus trichocarpa]
          Length = 675

 Score =  371 bits (953), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 202/556 (36%), Positives = 318/556 (57%), Gaps = 14/556 (2%)

Query: 42  VVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPE 101
            +SY   L+  L+N RL +AR +F+++P  N+  +T MI G     R+C+A KLF+ M  
Sbjct: 12  TLSYTTSLANHLKNQRLDQARLIFDKIPSPNLHLYTKMIAGYTRNDRLCDALKLFDRMSV 71

Query: 102 RNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEM 161
           R+VVSWNSM+ G +  G L  A ++F+ MP KNVISW  M+ GY++   +  A  LF +M
Sbjct: 72  RDVVSWNSMIKGCLDCGNLGMATRLFDEMPEKNVISWTTMVNGYLKFGRVELAQRLFLDM 131

Query: 162 EERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFI 221
             ++V  W +M+ GY   G VEEG  LF  MP ++V+SWT+MIGG   NG  +E+L +F 
Sbjct: 132 HVKDVAAWNAMVHGYFENGRVEEGVRLFEEMPVRDVISWTSMIGGLDLNGKSEEALFVFK 191

Query: 222 EM--KGICDNGNN--CNVQSCNSMIN---GYIRFGRLEEAQNLFDTVPVRDEISWTSMID 274
           +M   G+    +   C + +C + +    G    G + +    F       E    S+I 
Sbjct: 192 KMLRSGVEPTWSTFACVLSACANAVEFNLGVQVHGHVVKLGCFF------HEFISVSLIT 245

Query: 275 GYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNAT 334
            Y +  ++ +A+ +F+    ++ V WTA+++  V N    +A  +F +M   G  P  +T
Sbjct: 246 FYANCMKIEHAHKIFNETLTKNVVKWTALLTAYVWNNKHQDALRVFGDMTKMGALPNQST 305

Query: 335 FSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMV 394
           FS+   A      +D G++IH + +K   E+D+ + N L+ MY +CG +++A  +F N+ 
Sbjct: 306 FSITLKACCGLEALDKGKEIHTMAIKLGLETDVFVGNSLVVMYTECGNVNSAVAVFRNIN 365

Query: 395 SRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWE 454
            +D+VSWNS+++G + HG     L  F  M+  G  PN +TF G+LSACS +G++ +G  
Sbjct: 366 EKDIVSWNSIIVGSAQHGFGLWALIFFNQMIRRGVDPNEITFTGLLSACSRSGMLLKGRC 425

Query: 455 LFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFC 514
            F  +         P+HY  M+++LGR GK+ EAEE V  +P + +  IW ALL AC   
Sbjct: 426 FFEYISRYKSNVLRPQHYACMVDILGRCGKLDEAEELVRYMPVKANSMIWLALLSACRV- 484

Query: 515 EGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCS 574
             N E+AE AAK +L+L+P  + A+V+L NIYA++GR  +  ++R+ M   G+ K PG S
Sbjct: 485 HSNLEVAERAAKHILDLEPNCSSAYVLLSNIYASAGRWADVSRMRVKMKQGGLVKQPGSS 544

Query: 575 WLMRNGGIQMFLSGDK 590
           W++  G    FLS D+
Sbjct: 545 WVVLRGKKHEFLSADR 560



 Score = 75.9 bits (185), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 66/273 (24%), Positives = 122/273 (44%), Gaps = 46/273 (16%)

Query: 16  SSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEM------P 69
           S IT Y+    I+ A  +F     +NVV + A+L+ ++ N +  +A R+F +M      P
Sbjct: 242 SLITFYANCMKIEHAHKIFNETLTKNVVKWTALLTAYVWNNKHQDALRVFGDMTKMGALP 301

Query: 70  ERNVVSWT-AMICGLADAGRVCEARKLFEEMP-ERNVVSWNSMVVGLIRNGELNEARKVF 127
            ++  S T    CGL    +  E   +  ++  E +V   NS+VV     G +N A  VF
Sbjct: 302 NQSTFSITLKACCGLEALDKGKEIHTMAIKLGLETDVFVGNSLVVMYTECGNVNSAVAVF 361

Query: 128 NSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNV----VTWTSMISGYCRAGEVE 183
            ++  K+++SWN++I G  +      A++ F +M  R V    +T+T ++S   R+G + 
Sbjct: 362 RNINEKDIVSWNSIIVGSAQHGFGLWALIFFNQMIRRGVDPNEITFTGLLSACSRSGMLL 421

Query: 184 EGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMIN 243
           +G C F  + R            +  N    +     +++ G C                
Sbjct: 422 KGRCFFEYISR------------YKSNVLRPQHYACMVDILGRC---------------- 453

Query: 244 GYIRFGRLEEAQNLFDTVPVR-DEISWTSMIDG 275
                G+L+EA+ L   +PV+ + + W +++  
Sbjct: 454 -----GKLDEAEELVRYMPVKANSMIWLALLSA 481


>gi|51535392|dbj|BAD37262.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|51535558|dbj|BAD37476.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
          Length = 908

 Score =  370 bits (951), Expect = e-99,   Method: Compositional matrix adjust.
 Identities = 202/590 (34%), Positives = 332/590 (56%), Gaps = 32/590 (5%)

Query: 33  LFQLMPQRNVVSYNAMLSGFLQN---GRLSEARRLFEEMPERNVVSWTAMICGLADAGRV 89
            F  MP R+ VS+N +L+ +  +     L+ ARRLF+EMP+R+VV+W  ++   A  G +
Sbjct: 89  FFDAMPVRDAVSWNTLLAAYSASPHPDHLAAARRLFDEMPQRDVVTWNTLLGAYARRGLM 148

Query: 90  CEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECC 149
            EAR+LF+EMP+RN  SWN+MV G    G++ +A  VF++MP K+  S + M++G+ +  
Sbjct: 149 DEARRLFDEMPQRNAASWNTMVTGFFAAGQVVKALDVFDAMPAKDSASLSTMVSGFTKNG 208

Query: 150 MMGEAIVLFEEM-----EERNVVTWTSMISGYCRAGEVEEGYCLFRRMPR---------- 194
           M+ EA  L  +       ++ V  + ++I  Y +AG   +   LF  +P+          
Sbjct: 209 MLHEAEELLTKRLSVTDMDKAVDAYNTLIVAYGQAGRFSDAKRLFDMIPKGQYQHNMLKR 268

Query: 195 ----KNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGR 250
               +NVVSW +M+  +   G    +  LF EM        + ++ S N+MI+GY +   
Sbjct: 269 KGFERNVVSWNSMMICYIKAGDVCSARALFNEMP-------DKDLVSWNTMISGYTQASD 321

Query: 251 LEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQN 310
           ++E++ LF  +P  D +SW  +I G++  G+  +A   F  MP+R  ++W  MISG  +N
Sbjct: 322 MKESEKLFWEMPDPDTVSWNLIIQGFMQKGEAEHARGFFDRMPERGTISWNTMISGYEKN 381

Query: 311 ELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILE 370
             ++ +  LF +M   G  P   TFS +  A  +   + LG QIH ++ K+    D  + 
Sbjct: 382 GNYISSVKLFSKMLEVGEIPDRHTFSSVLAACASIPMLGLGAQIHQLVEKSFV-PDTAIS 440

Query: 371 NCLISMYAKCGVIDNAYNIFSNM-VSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGT 429
           N LI+MY++CG +++A  IF  M   +DLVSWN+++  + HHG A + L++F+ M  +  
Sbjct: 441 NALITMYSRCGALNDAEAIFKQMHTKKDLVSWNALIGCYEHHGRATKALQLFKEMRRAKV 500

Query: 430 HPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAE 489
            P  +TF+ +LSAC +AGLVS G  +F+ M   Y I    EHY +++NL+GR G++ +A 
Sbjct: 501 MPTHITFVSLLSACVNAGLVSEGRMVFDTMVHEYGIVARIEHYAALVNLIGRHGQLDDAL 560

Query: 490 EFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAAS 549
           E +  +P  PD  +WGA LGAC   + N  +A+ AAK L  ++P ++  +V++ N++A  
Sbjct: 561 EVINSMPMAPDRSVWGAFLGACT-AKKNEPLAQMAAKELSTINPDSSAPYVLIHNLHAHE 619

Query: 550 GRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEIL 599
           G+      +R +M  +G+ K PG SW+   G + +F+SGD       EI 
Sbjct: 620 GKWGSAAVVREEMERQGIYKQPGYSWIDLEGKMHVFISGDTWHPNAQEIF 669



 Score =  243 bits (621), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 152/526 (28%), Positives = 254/526 (48%), Gaps = 67/526 (12%)

Query: 42  VVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPE 101
           V+ +N  L+  L+ GR   ARRLF+ +P R+VV+W +++ GLA       AR+ F+ MP 
Sbjct: 36  VMRHNRSLAALLRAGRYGAARRLFDALPARSVVTWNSLLAGLARRPDARAAREFFDAMPV 95

Query: 102 RNVVSWNSMVVGLIRN---GELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLF 158
           R+ VSWN+++     +     L  AR++F+ MP ++V++WN ++  Y    +M EA  LF
Sbjct: 96  RDAVSWNTLLAAYSASPHPDHLAAARRLFDEMPQRDVVTWNTLLGAYARRGLMDEARRLF 155

Query: 159 EEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLL 218
           +EM +RN  +W +M++G+  AG+V +   +F  MP K+  S + M+ GF  NG   E+  
Sbjct: 156 DEMPQRNAASWNTMVTGFFAAGQVVKALDVFDAMPAKDSASLSTMVSGFTKNGMLHEAEE 215

Query: 219 LFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPV--------------R 264
           L  +   + D   +  V + N++I  Y + GR  +A+ LFD +P               R
Sbjct: 216 LLTKRLSVTD--MDKAVDAYNTLIVAYGQAGRFSDAKRLFDMIPKGQYQHNMLKRKGFER 273

Query: 265 DEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMR 324
           + +SW SM+  Y+  G V +A  LF+ MPD+D V+W  MISG  Q     E+  LF EM 
Sbjct: 274 NVVSWNSMMICYIKAGDVCSARALFNEMPDKDLVSWNTMISGYTQASDMKESEKLFWEM- 332

Query: 325 AHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVID 384
                                                  + D +  N +I  + + G  +
Sbjct: 333 --------------------------------------PDPDTVSWNLIIQGFMQKGEAE 354

Query: 385 NAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACS 444
           +A   F  M  R  +SWN+M+ G+  +G    ++K+F  MLE G  P+  TF  +L+AC+
Sbjct: 355 HARGFFDRMPERGTISWNTMISGYEKNGNYISSVKLFSKMLEVGEIPDRHTFSSVLAACA 414

Query: 445 HAGLVSRGWELFNAMFDVYKIQPGPEHYVS--MINLLGRAGKIKEAEEFVLRLPFEPDHR 502
              ++  G ++   +   +     P+  +S  +I +  R G + +AE    ++  + D  
Sbjct: 415 SIPMLGLGAQIHQLVEKSFV----PDTAISNALITMYSRCGALNDAEAIFKQMHTKKDLV 470

Query: 503 IWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAA 548
            W AL+G C    G A  A    K +     +  P H+   ++ +A
Sbjct: 471 SWNALIG-CYEHHGRATKALQLFKEMRRAKVM--PTHITFVSLLSA 513



 Score =  199 bits (505), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 137/495 (27%), Positives = 228/495 (46%), Gaps = 56/495 (11%)

Query: 7   PKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFE 66
           P+  VV   + +  Y++RG +DEA+ LF  MPQRN  S+N M++GF   G++ +A  +F+
Sbjct: 128 PQRDVVTWNTLLGAYARRGLMDEARRLFDEMPQRNAASWNTMVTGFFAAGQVVKALDVFD 187

Query: 67  EMPERNVVSWTAMICGLA------------------------------------DAGRVC 90
            MP ++  S + M+ G                                       AGR  
Sbjct: 188 AMPAKDSASLSTMVSGFTKNGMLHEAEELLTKRLSVTDMDKAVDAYNTLIVAYGQAGRFS 247

Query: 91  EARKLFEEMP--------------ERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVI 136
           +A++LF+ +P              ERNVVSWNSM++  I+ G++  AR +FN MP K+++
Sbjct: 248 DAKRLFDMIPKGQYQHNMLKRKGFERNVVSWNSMMICYIKAGDVCSARALFNEMPDKDLV 307

Query: 137 SWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKN 196
           SWN MI+GY +   M E+  LF EM + + V+W  +I G+ + GE E     F RMP + 
Sbjct: 308 SWNTMISGYTQASDMKESEKLFWEMPDPDTVSWNLIIQGFMQKGEAEHARGFFDRMPERG 367

Query: 197 VVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQN 256
            +SW  MI G+  NG +  S+ LF +M  + +  +     S  +        G   +   
Sbjct: 368 TISWNTMISGYEKNGNYISSVKLFSKMLEVGEIPDRHTFSSVLAACASIPMLGLGAQIHQ 427

Query: 257 LFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNM-PDRDAVAWTAMISGLVQNELFVE 315
           L +   V D     ++I  Y   G +++A  +F  M   +D V+W A+I     +    +
Sbjct: 428 LVEKSFVPDTAISNALITMYSRCGALNDAEAIFKQMHTKKDLVSWNALIGCYEHHGRATK 487

Query: 316 ATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILE-NCLI 374
           A  LF EMR   V P + TF  L  A      +  GR +   ++        I     L+
Sbjct: 488 ALQLFKEMRRAKVMPTHITFVSLLSACVNAGLVSEGRMVFDTMVHEYGIVARIEHYAALV 547

Query: 375 SMYAKCGVIDNAYNIFSNM-VSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPN- 432
           ++  + G +D+A  + ++M ++ D   W + +   +     NE L    +   S  +P+ 
Sbjct: 548 NLIGRHGQLDDALEVINSMPMAPDRSVWGAFLGACT--AKKNEPLAQMAAKELSTINPDS 605

Query: 433 SVTFLGILSACSHAG 447
           S  ++ I +  +H G
Sbjct: 606 SAPYVLIHNLHAHEG 620


>gi|297605437|ref|NP_001057211.2| Os06g0228900 [Oryza sativa Japonica Group]
 gi|255676854|dbj|BAF19125.2| Os06g0228900 [Oryza sativa Japonica Group]
          Length = 695

 Score =  370 bits (950), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 202/590 (34%), Positives = 332/590 (56%), Gaps = 32/590 (5%)

Query: 33  LFQLMPQRNVVSYNAMLSGFLQN---GRLSEARRLFEEMPERNVVSWTAMICGLADAGRV 89
            F  MP R+ VS+N +L+ +  +     L+ ARRLF+EMP+R+VV+W  ++   A  G +
Sbjct: 53  FFDAMPVRDAVSWNTLLAAYSASPHPDHLAAARRLFDEMPQRDVVTWNTLLGAYARRGLM 112

Query: 90  CEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECC 149
            EAR+LF+EMP+RN  SWN+MV G    G++ +A  VF++MP K+  S + M++G+ +  
Sbjct: 113 DEARRLFDEMPQRNAASWNTMVTGFFAAGQVVKALDVFDAMPAKDSASLSTMVSGFTKNG 172

Query: 150 MMGEAIVLFEEM-----EERNVVTWTSMISGYCRAGEVEEGYCLFRRMPR---------- 194
           M+ EA  L  +       ++ V  + ++I  Y +AG   +   LF  +P+          
Sbjct: 173 MLHEAEELLTKRLSVTDMDKAVDAYNTLIVAYGQAGRFSDAKRLFDMIPKGQYQHNMLKR 232

Query: 195 ----KNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGR 250
               +NVVSW +M+  +   G    +  LF EM        + ++ S N+MI+GY +   
Sbjct: 233 KGFERNVVSWNSMMICYIKAGDVCSARALFNEMP-------DKDLVSWNTMISGYTQASD 285

Query: 251 LEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQN 310
           ++E++ LF  +P  D +SW  +I G++  G+  +A   F  MP+R  ++W  MISG  +N
Sbjct: 286 MKESEKLFWEMPDPDTVSWNLIIQGFMQKGEAEHARGFFDRMPERGTISWNTMISGYEKN 345

Query: 311 ELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILE 370
             ++ +  LF +M   G  P   TFS +  A  +   + LG QIH ++ K+    D  + 
Sbjct: 346 GNYISSVKLFSKMLEVGEIPDRHTFSSVLAACASIPMLGLGAQIHQLVEKS-FVPDTAIS 404

Query: 371 NCLISMYAKCGVIDNAYNIFSNM-VSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGT 429
           N LI+MY++CG +++A  IF  M   +DLVSWN+++  + HHG A + L++F+ M  +  
Sbjct: 405 NALITMYSRCGALNDAEAIFKQMHTKKDLVSWNALIGCYEHHGRATKALQLFKEMRRAKV 464

Query: 430 HPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAE 489
            P  +TF+ +LSAC +AGLVS G  +F+ M   Y I    EHY +++NL+GR G++ +A 
Sbjct: 465 MPTHITFVSLLSACVNAGLVSEGRMVFDTMVHEYGIVARIEHYAALVNLIGRHGQLDDAL 524

Query: 490 EFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAAS 549
           E +  +P  PD  +WGA LGAC   + N  +A+ AAK L  ++P ++  +V++ N++A  
Sbjct: 525 EVINSMPMAPDRSVWGAFLGACT-AKKNEPLAQMAAKELSTINPDSSAPYVLIHNLHAHE 583

Query: 550 GRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEIL 599
           G+      +R +M  +G+ K PG SW+   G + +F+SGD       EI 
Sbjct: 584 GKWGSAAVVREEMERQGIYKQPGYSWIDLEGKMHVFISGDTWHPNAQEIF 633



 Score =  241 bits (616), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 151/523 (28%), Positives = 252/523 (48%), Gaps = 67/523 (12%)

Query: 45  YNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNV 104
           +N  L+  L+ GR   ARRLF+ +P R+VV+W +++ GLA       AR+ F+ MP R+ 
Sbjct: 3   HNRSLAALLRAGRYGAARRLFDALPARSVVTWNSLLAGLARRPDARAAREFFDAMPVRDA 62

Query: 105 VSWNSMVVGLIRN---GELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEM 161
           VSWN+++     +     L  AR++F+ MP ++V++WN ++  Y    +M EA  LF+EM
Sbjct: 63  VSWNTLLAAYSASPHPDHLAAARRLFDEMPQRDVVTWNTLLGAYARRGLMDEARRLFDEM 122

Query: 162 EERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFI 221
            +RN  +W +M++G+  AG+V +   +F  MP K+  S + M+ GF  NG   E+  L  
Sbjct: 123 PQRNAASWNTMVTGFFAAGQVVKALDVFDAMPAKDSASLSTMVSGFTKNGMLHEAEELLT 182

Query: 222 EMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPV--------------RDEI 267
           +   + D   +  V + N++I  Y + GR  +A+ LFD +P               R+ +
Sbjct: 183 KRLSVTD--MDKAVDAYNTLIVAYGQAGRFSDAKRLFDMIPKGQYQHNMLKRKGFERNVV 240

Query: 268 SWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHG 327
           SW SM+  Y+  G V +A  LF+ MPD+D V+W  MISG  Q     E+  LF EM    
Sbjct: 241 SWNSMMICYIKAGDVCSARALFNEMPDKDLVSWNTMISGYTQASDMKESEKLFWEM---- 296

Query: 328 VPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAY 387
                                               + D +  N +I  + + G  ++A 
Sbjct: 297 -----------------------------------PDPDTVSWNLIIQGFMQKGEAEHAR 321

Query: 388 NIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAG 447
             F  M  R  +SWN+M+ G+  +G    ++K+F  MLE G  P+  TF  +L+AC+   
Sbjct: 322 GFFDRMPERGTISWNTMISGYEKNGNYISSVKLFSKMLEVGEIPDRHTFSSVLAACASIP 381

Query: 448 LVSRGWELFNAMFDVYKIQPGPEHYVS--MINLLGRAGKIKEAEEFVLRLPFEPDHRIWG 505
           ++  G ++   +   +     P+  +S  +I +  R G + +AE    ++  + D   W 
Sbjct: 382 MLGLGAQIHQLVEKSFV----PDTAISNALITMYSRCGALNDAEAIFKQMHTKKDLVSWN 437

Query: 506 ALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAA 548
           AL+G C    G A  A    K +     +  P H+   ++ +A
Sbjct: 438 ALIG-CYEHHGRATKALQLFKEMRRAKVM--PTHITFVSLLSA 477



 Score =  199 bits (505), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 126/439 (28%), Positives = 205/439 (46%), Gaps = 52/439 (11%)

Query: 7   PKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFE 66
           P+  VV   + +  Y++RG +DEA+ LF  MPQRN  S+N M++GF   G++ +A  +F+
Sbjct: 92  PQRDVVTWNTLLGAYARRGLMDEARRLFDEMPQRNAASWNTMVTGFFAAGQVVKALDVFD 151

Query: 67  EMPERNVVSWTAMICGLA------------------------------------DAGRVC 90
            MP ++  S + M+ G                                       AGR  
Sbjct: 152 AMPAKDSASLSTMVSGFTKNGMLHEAEELLTKRLSVTDMDKAVDAYNTLIVAYGQAGRFS 211

Query: 91  EARKLFEEMP--------------ERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVI 136
           +A++LF+ +P              ERNVVSWNSM++  I+ G++  AR +FN MP K+++
Sbjct: 212 DAKRLFDMIPKGQYQHNMLKRKGFERNVVSWNSMMICYIKAGDVCSARALFNEMPDKDLV 271

Query: 137 SWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKN 196
           SWN MI+GY +   M E+  LF EM + + V+W  +I G+ + GE E     F RMP + 
Sbjct: 272 SWNTMISGYTQASDMKESEKLFWEMPDPDTVSWNLIIQGFMQKGEAEHARGFFDRMPERG 331

Query: 197 VVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQN 256
            +SW  MI G+  NG +  S+ LF +M  + +  +     S  +        G   +   
Sbjct: 332 TISWNTMISGYEKNGNYISSVKLFSKMLEVGEIPDRHTFSSVLAACASIPMLGLGAQIHQ 391

Query: 257 LFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNM-PDRDAVAWTAMISGLVQNELFVE 315
           L +   V D     ++I  Y   G +++A  +F  M   +D V+W A+I     +    +
Sbjct: 392 LVEKSFVPDTAISNALITMYSRCGALNDAEAIFKQMHTKKDLVSWNALIGCYEHHGRATK 451

Query: 316 ATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILE-NCLI 374
           A  LF EMR   V P + TF  L  A      +  GR +   ++        I     L+
Sbjct: 452 ALQLFKEMRRAKVMPTHITFVSLLSACVNAGLVSEGRMVFDTMVHEYGIVARIEHYAALV 511

Query: 375 SMYAKCGVIDNAYNIFSNM 393
           ++  + G +D+A  + ++M
Sbjct: 512 NLIGRHGQLDDALEVINSM 530


>gi|356528072|ref|XP_003532629.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62260,
           mitochondrial-like [Glycine max]
          Length = 647

 Score =  369 bits (947), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 207/610 (33%), Positives = 341/610 (55%), Gaps = 60/610 (9%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWT 77
           I+   + G + EA+ALF  M  R+ V++N+M++G++    ++ AR+LF+EMP R+VVSW 
Sbjct: 46  ISNLIRSGRLSEARALFDSMKHRDTVTWNSMITGYVHRREIARARQLFDEMPRRDVVSWN 105

Query: 78  AMICGLAD---AGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKN 134
            ++ G      +  V E R+LFE MP+R+ VSWN+++ G  +NG +++A K+FN+MP +N
Sbjct: 106 LIVSGYFSCRGSRFVEEGRRLFELMPQRDCVSWNTVISGYAKNGRMDQALKLFNAMPERN 165

Query: 135 VISWNAMIAGYVECCMMGEAIVLFEEMEE--------------RN--------------- 165
            +S NA+I G++    +  A+  F  M E              RN               
Sbjct: 166 AVSSNALITGFLLNGDVDSAVDFFRTMPEHYSTSLSALISGLVRNGELDMAAGILCECGN 225

Query: 166 -----VVTWTSMISGYCRAGEVEEGYCLFRRMP-------------RKNVVSWTAMIGGF 207
                V  + ++I+GY + G VEE   LF  +P             R+NVVSW +M+  +
Sbjct: 226 GDDDLVHAYNTLIAGYGQRGHVEEARRLFDGIPDDRGDGDEGQRRFRRNVVSWNSMMMCY 285

Query: 208 AWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEI 267
              G    +  LF  M       + C   S N+MI+GY++   +EEA  LF  +P+ D +
Sbjct: 286 VKAGDIVSARELFDRMV----EQDTC---SWNTMISGYVQISNMEEASKLFREMPIPDVL 338

Query: 268 SWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHG 327
           SW  ++ G+   G ++ A   F  MP ++ ++W ++I+G  +NE +  A  LF  M+  G
Sbjct: 339 SWNLIVSGFAQKGDLNLAKDFFERMPLKNLISWNSIIAGYEKNEDYKGAIQLFSRMQFEG 398

Query: 328 VPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAY 387
             P   T S +        N+ LG+QIH ++ K     D  + N LI+MY++CG I +A 
Sbjct: 399 ERPDRHTLSSVMSVCTGLVNLYLGKQIHQLVTKIVI-PDSPINNSLITMYSRCGAIVDAC 457

Query: 388 NIFSNM-VSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHA 446
            +F+ + + +D+++WN+M+ G++ HGLA E L++F+ M     HP  +TF+ +++AC+HA
Sbjct: 458 TVFNEIKLYKDVITWNAMIGGYASHGLAAEALELFKLMKRLKIHPTYITFISVMNACAHA 517

Query: 447 GLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGA 506
           GLV  G   F +M + Y I+   EH+ S++++LGR G+++EA + +  +PF+PD  +WGA
Sbjct: 518 GLVEEGRRQFKSMINDYGIERRVEHFASLVDILGRQGQLQEAMDLINTMPFKPDKAVWGA 577

Query: 507 LLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKG 566
           LL AC     N E+A  AA  L+ L+P ++  +V+L NIYA  G+  +   +R+ M  K 
Sbjct: 578 LLSACR-VHNNVELALVAADALIRLEPESSAPYVLLYNIYANLGQWDDAESVRVLMEEKN 636

Query: 567 VRKVPGCSWL 576
           V+K  G SW+
Sbjct: 637 VKKQAGYSWV 646



 Score =  226 bits (577), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 144/481 (29%), Positives = 234/481 (48%), Gaps = 61/481 (12%)

Query: 46  NAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVV 105
           N  +S  +++GRLSEAR LF+ M  R+ V+W +MI G      +  AR+LF+EMP R+VV
Sbjct: 43  NKKISNLIRSGRLSEARALFDSMKHRDTVTWNSMITGYVHRREIARARQLFDEMPRRDVV 102

Query: 106 SWNSMVVGLI--RNGE-LNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEME 162
           SWN +V G    R    + E R++F  MP ++ +SWN +I+GY +   M +A+ LF  M 
Sbjct: 103 SWNLIVSGYFSCRGSRFVEEGRRLFELMPQRDCVSWNTVISGYAKNGRMDQALKLFNAMP 162

Query: 163 ERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIE 222
           ERN V+  ++I+G+   G+V+     FR MP     S +A+I G   NG    +  +  E
Sbjct: 163 ERNAVSSNALITGFLLNGDVDSAVDFFRTMPEHYSTSLSALISGLVRNGELDMAAGILCE 222

Query: 223 MKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVP-------------VRDEISW 269
               C NG++  V + N++I GY + G +EEA+ LFD +P              R+ +SW
Sbjct: 223 ----CGNGDDDLVHAYNTLIAGYGQRGHVEEARRLFDGIPDDRGDGDEGQRRFRRNVVSW 278

Query: 270 TSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVP 329
            SM+  Y+  G + +A  LF  M ++D  +W  MISG VQ     EA+ LF EM    +P
Sbjct: 279 NSMMMCYVKAGDIVSARELFDRMVEQDTCSWNTMISGYVQISNMEEASKLFREM---PIP 335

Query: 330 PLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNI 389
                                               D++  N ++S +A+ G ++ A + 
Sbjct: 336 ------------------------------------DVLSWNLIVSGFAQKGDLNLAKDF 359

Query: 390 FSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLV 449
           F  M  ++L+SWNS++ G+  +      +++F  M   G  P+  T   ++S C+    +
Sbjct: 360 FERMPLKNLISWNSIIAGYEKNEDYKGAIQLFSRMQFEGERPDRHTLSSVMSVCTGLVNL 419

Query: 450 SRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLG 509
             G ++   +  +  + P      S+I +  R G I +A      +    D   W A++G
Sbjct: 420 YLGKQIHQLVTKI--VIPDSPINNSLITMYSRCGAIVDACTVFNEIKLYKDVITWNAMIG 477

Query: 510 A 510
            
Sbjct: 478 G 478



 Score =  189 bits (480), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 127/449 (28%), Positives = 212/449 (47%), Gaps = 50/449 (11%)

Query: 7   PKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFE 66
           P+   V   + I+ Y+K G +D+A  LF  MP+RN VS NA+++GFL NG +  A   F 
Sbjct: 131 PQRDCVSWNTVISGYAKNGRMDQALKLFNAMPERNAVSSNALITGFLLNGDVDSAVDFFR 190

Query: 67  EMPERNVVSWTAMICGL----------------------------------ADAGRVCEA 92
            MPE    S +A+I GL                                     G V EA
Sbjct: 191 TMPEHYSTSLSALISGLVRNGELDMAAGILCECGNGDDDLVHAYNTLIAGYGQRGHVEEA 250

Query: 93  RKLFEEMPE-------------RNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWN 139
           R+LF+ +P+             RNVVSWNSM++  ++ G++  AR++F+ M  ++  SWN
Sbjct: 251 RRLFDGIPDDRGDGDEGQRRFRRNVVSWNSMMMCYVKAGDIVSARELFDRMVEQDTCSWN 310

Query: 140 AMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVS 199
            MI+GYV+   M EA  LF EM   +V++W  ++SG+ + G++      F RMP KN++S
Sbjct: 311 TMISGYVQISNMEEASKLFREMPIPDVLSWNLIVSGFAQKGDLNLAKDFFERMPLKNLIS 370

Query: 200 WTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFD 259
           W ++I G+  N  +K ++ LF  M+   +  +   + S  S+  G +     ++   L  
Sbjct: 371 WNSIIAGYEKNEDYKGAIQLFSRMQFEGERPDRHTLSSVMSVCTGLVNLYLGKQIHQLVT 430

Query: 260 TVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMP-DRDAVAWTAMISGLVQNELFVEATY 318
            + + D     S+I  Y   G + +A  +F+ +   +D + W AMI G   + L  EA  
Sbjct: 431 KIVIPDSPINNSLITMYSRCGAIVDACTVFNEIKLYKDVITWNAMIGGYASHGLAAEALE 490

Query: 319 LFMEMRAHGVPPLNATFSVLFGAAGATANIDLG-RQIHCVLMKTESESDLILENCLISMY 377
           LF  M+   + P   TF  +  A      ++ G RQ   ++     E  +     L+ + 
Sbjct: 491 LFKLMKRLKIHPTYITFISVMNACAHAGLVEEGRRQFKSMINDYGIERRVEHFASLVDIL 550

Query: 378 AKCGVIDNAYNIFSNMVSR-DLVSWNSMV 405
            + G +  A ++ + M  + D   W +++
Sbjct: 551 GRQGQLQEAMDLINTMPFKPDKAVWGALL 579



 Score =  149 bits (377), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 110/360 (30%), Positives = 170/360 (47%), Gaps = 61/360 (16%)

Query: 5   NHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMP-------------QRNVVSYNAMLSG 51
           N    LV    + I  Y +RG ++EA+ LF  +P             +RNVVS+N+M+  
Sbjct: 225 NGDDDLVHAYNTLIAGYGQRGHVEEARRLFDGIPDDRGDGDEGQRRFRRNVVSWNSMMMC 284

Query: 52  FLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMV 111
           +++ G +  AR LF+ M E++  SW  MI G      + EA KLF EMP  +V+SWN +V
Sbjct: 285 YVKAGDIVSARELFDRMVEQDTCSWNTMISGYVQISNMEEASKLFREMPIPDVLSWNLIV 344

Query: 112 VGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEME------ERN 165
            G  + G+LN A+  F  MP+KN+ISWN++IAGY +      AI LF  M+      +R+
Sbjct: 345 SGFAQKGDLNLAKDFFERMPLKNLISWNSIIAGYEKNEDYKGAIQLFSRMQFEGERPDRH 404

Query: 166 VVTWT--------------------------------SMISGYCRAGEVEEGYCLFRRMP 193
            ++                                  S+I+ Y R G + +   +F  + 
Sbjct: 405 TLSSVMSVCTGLVNLYLGKQIHQLVTKIVIPDSPINNSLITMYSRCGAIVDACTVFNEIK 464

Query: 194 -RKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLE 252
             K+V++W AMIGG+A +G   E+L LF  MK +  +          S++N     G +E
Sbjct: 465 LYKDVITWNAMIGGYASHGLAAEALELFKLMKRLKIHPTYITFI---SVMNACAHAGLVE 521

Query: 253 EAQNLF-----DTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDR-DAVAWTAMISG 306
           E +  F     D    R    + S++D     GQ+  A  L + MP + D   W A++S 
Sbjct: 522 EGRRQFKSMINDYGIERRVEHFASLVDILGRQGQLQEAMDLINTMPFKPDKAVWGALLSA 581



 Score = 92.0 bits (227), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 77/270 (28%), Positives = 121/270 (44%), Gaps = 50/270 (18%)

Query: 231 NNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFH 290
           N+  +   N  I+  IR GRL EA+ LFD++  RD ++W SMI GY+   +++ A  LF 
Sbjct: 35  NSSPLNRSNKKISNLIRSGRLSEARALFDSMKHRDTVTWNSMITGYVHRREIARARQLFD 94

Query: 291 NMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDL 350
            MP RD V+W  ++SG                                F   G+   ++ 
Sbjct: 95  EMPRRDVVSWNLIVSG-------------------------------YFSCRGSRF-VEE 122

Query: 351 GRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSH 410
           GR+    L +   + D +  N +IS YAK G +D A  +F+ M  R+ VS N+++ GF  
Sbjct: 123 GRR----LFELMPQRDCVSWNTVISGYAKNGRMDQALKLFNAMPERNAVSSNALITGFLL 178

Query: 411 HGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPE 470
           +G  +  +  F +M E      S +   ++S     GLV  G EL  A   + +   G +
Sbjct: 179 NGDVDSAVDFFRTMPEH----YSTSLSALIS-----GLVRNG-ELDMAAGILCECGNGDD 228

Query: 471 HYVSMINLL----GRAGKIKEAEEFVLRLP 496
             V   N L    G+ G ++EA      +P
Sbjct: 229 DLVHAYNTLIAGYGQRGHVEEARRLFDGIP 258



 Score = 43.1 bits (100), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 29/100 (29%), Positives = 43/100 (43%), Gaps = 1/100 (1%)

Query: 360 KTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLK 419
           K  + S L   N  IS   + G +  A  +F +M  RD V+WNSM+ G+ H        +
Sbjct: 32  KYNNSSPLNRSNKKISNLIRSGRLSEARALFDSMKHRDTVTWNSMITGYVHRREIARARQ 91

Query: 420 VFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAM 459
           +F+ M        ++   G  S C  +  V  G  LF  M
Sbjct: 92  LFDEMPRRDVVSWNLIVSGYFS-CRGSRFVEEGRRLFELM 130


>gi|359480846|ref|XP_002280702.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Vitis vinifera]
          Length = 785

 Score =  368 bits (944), Expect = 6e-99,   Method: Compositional matrix adjust.
 Identities = 221/623 (35%), Positives = 344/623 (55%), Gaps = 55/623 (8%)

Query: 21  YSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMI 80
           Y+K GFI +A  +F  MP ++V S+N +LSG+ + GRL EA R+FEEMPE + VSWTAMI
Sbjct: 58  YAKTGFIYDAHRVFDEMPVKSVFSWNIILSGYAKGGRLEEAHRVFEEMPEPDSVSWTAMI 117

Query: 81  CGLADAGRVCEARKLFEEMPE--------------------------RNVVSW------- 107
            G    G+   A  +F EM                            R V S+       
Sbjct: 118 VGYNQMGQFENAIGMFREMVSDDVPPTQFTLTNVLASCAAVECLGIGRKVHSFVVKHGLS 177

Query: 108 ------NSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEM 161
                 NS++    ++G+   A+ VF+ M +K+  SWN MI+ +++  ++  A V FE+M
Sbjct: 178 SYISVANSLLNMYAKSGDPVTAKIVFDRMKLKSTSSWNTMISSHMQSGLVDLAQVQFEQM 237

Query: 162 EERNVVTWTSMISGYCRAGEVEEGYCLFRRM-----PRKNVVSWTAMIGGFAWNGFHKES 216
            ER+VV+W +MISGY + G   E   +F +M      + +  +  + +   A    + E+
Sbjct: 238 IERDVVSWNAMISGYNQHGFDREALDIFSKMLMDSSSKPDKFTLASALSACA----NLEN 293

Query: 217 LLLFIEMKG-ICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVR--DEISWTSMI 273
           L L  ++   I     +      N++I+ Y + G +E AQ + +   +   D I++T+++
Sbjct: 294 LKLGKQIHAHIIRTEFDTFGAVGNALISMYSKSGGVEIAQKIIEQSMISNLDVIAFTALL 353

Query: 274 DGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNA 333
           DGY+ +G ++ A  +F ++  RD VAWTAMI G VQN    +A  LF  M   G  P N 
Sbjct: 354 DGYVKLGDINPARRIFDSLRVRDVVAWTAMIVGYVQNGFNQDAMELFRSMIKEGPKPNNY 413

Query: 334 TFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNM 393
           T + +   + + A++D GRQIH    ++ + S + + N LI+MYAK G I++A  +F N+
Sbjct: 414 TLATMLSVSSSLASLDHGRQIHASATRSGNASSVSVSNALITMYAKSGSINDARWVF-NL 472

Query: 394 V--SRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSR 451
           +   RD ++W SM++  + HGL  E L +FE MLE+G  P+ +T++G+LSAC+H GLV +
Sbjct: 473 IHWKRDTITWTSMIIALAQHGLGEEALTLFERMLENGIKPDHITYVGVLSACTHVGLVEQ 532

Query: 452 GWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGAC 511
           G   +N M + +KI P P HY  MI+L GRAG ++EA  F+  +P EPD   WG+LL +C
Sbjct: 533 GRSYYNLMQNAHKIIPTPSHYACMIDLFGRAGLLQEAHAFIENMPIEPDVIAWGSLLASC 592

Query: 512 GFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVP 571
                N E+AE AA+RLL ++P N+ A+  L N+Y+A G+      +R  M  KGV+K  
Sbjct: 593 K-VHKNVELAEVAAERLLLIEPENSGAYSALANVYSACGQWENAANIRKSMKDKGVKKDQ 651

Query: 572 GCSWLMRNGGIQMFLSGDKIPAQ 594
           G SW+     + +F   D +  Q
Sbjct: 652 GFSWVQIKNKVHIFGVDDGLHPQ 674



 Score =  152 bits (385), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 121/480 (25%), Positives = 212/480 (44%), Gaps = 78/480 (16%)

Query: 139 NAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVV 198
           N ++  Y +   + +A  +F+EM  ++V +W  ++SGY + G +EE + +F  MP  + V
Sbjct: 52  NNLMNFYAKTGFIYDAHRVFDEMPVKSVFSWNIILSGYAKGGRLEEAHRVFEEMPEPDSV 111

Query: 199 SWTAMIGGFAWNGFHKESLLLFIEMKG--------------------------------I 226
           SWTAMI G+   G  + ++ +F EM                                  +
Sbjct: 112 SWTAMIVGYNQMGQFENAIGMFREMVSDDVPPTQFTLTNVLASCAAVECLGIGRKVHSFV 171

Query: 227 CDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAY 286
             +G +  +   NS++N Y + G    A+ +FD + ++   SW +MI  ++  G V  A 
Sbjct: 172 VKHGLSSYISVANSLLNMYAKSGDPVTAKIVFDRMKLKSTSSWNTMISSHMQSGLVDLAQ 231

Query: 287 YLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEM-RAHGVPPLNATFSVLFGAAGAT 345
             F  M +RD V+W AMISG  Q+    EA  +F +M       P   T +    A    
Sbjct: 232 VQFEQMIERDVVSWNAMISGYNQHGFDREALDIFSKMLMDSSSKPDKFTLASALSACANL 291

Query: 346 ANIDLGRQIHCVLMKTESESDLILENCLISMYAKC------------------------- 380
            N+ LG+QIH  +++TE ++   + N LISMY+K                          
Sbjct: 292 ENLKLGKQIHAHIIRTEFDTFGAVGNALISMYSKSGGVEIAQKIIEQSMISNLDVIAFTA 351

Query: 381 --------GVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPN 432
                   G I+ A  IF ++  RD+V+W +M++G+  +G   + +++F SM++ G  PN
Sbjct: 352 LLDGYVKLGDINPARRIFDSLRVRDVVAWTAMIVGYVQNGFNQDAMELFRSMIKEGPKPN 411

Query: 433 SVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVS----MINLLGRAGKIKEA 488
           + T   +LS  S    +  G ++  +       + G    VS    +I +  ++G I +A
Sbjct: 412 NYTLATMLSVSSSLASLDHGRQIHAS-----ATRSGNASSVSVSNALITMYAKSGSINDA 466

Query: 489 EEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAA 548
                 + ++ D   W +++ A     G  E A    +R+LE      P H+    + +A
Sbjct: 467 RWVFNLIHWKRDTITWTSMIIALA-QHGLGEEALTLFERMLENGI--KPDHITYVGVLSA 523



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 103/416 (24%), Positives = 199/416 (47%), Gaps = 37/416 (8%)

Query: 16  SSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVS 75
           S +  Y+K G    AK +F  M  ++  S+N M+S  +Q+G +  A+  FE+M ER+VVS
Sbjct: 185 SLLNMYAKSGDPVTAKIVFDRMKLKSTSSWNTMISSHMQSGLVDLAQVQFEQMIERDVVS 244

Query: 76  WTAMICGLADAGRVCEARKLFEEM-------PERNVVSWNSMVVGLIRNGELNEA----- 123
           W AMI G    G   EA  +F +M       P++  ++        + N +L +      
Sbjct: 245 WNAMISGYNQHGFDREALDIFSKMLMDSSSKPDKFTLASALSACANLENLKLGKQIHAHI 304

Query: 124 -RKVFNSMPIKNVISWNAMIAGYVEC--CMMGEAIVLFEEMEERNVVTWTSMISGYCRAG 180
            R  F++         NA+I+ Y +     + + I+    +   +V+ +T+++ GY + G
Sbjct: 305 IRTEFDTFGAVG----NALISMYSKSGGVEIAQKIIEQSMISNLDVIAFTALLDGYVKLG 360

Query: 181 EVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNS 240
           ++     +F  +  ++VV+WTAMI G+  NGF+++++ LF   + +   G   N  +  +
Sbjct: 361 DINPARRIFDSLRVRDVVAWTAMIVGYVQNGFNQDAMELF---RSMIKEGPKPNNYTLAT 417

Query: 241 MINGYIRFGRLEEAQNLFDTVPVRDEISWTS----MIDGYLSVGQVSNAYYLFHNMP-DR 295
           M++       L+  + +  +       S  S    +I  Y   G +++A ++F+ +   R
Sbjct: 418 MLSVSSSLASLDHGRQIHASATRSGNASSVSVSNALITMYAKSGSINDARWVFNLIHWKR 477

Query: 296 DAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIH 355
           D + WT+MI  L Q+ L  EA  LF  M  +G+ P + T+  +  A      ++ GR  +
Sbjct: 478 DTITWTSMIIALAQHGLGEEALTLFERMLENGIKPDHITYVGVLSACTHVGLVEQGRSYY 537

Query: 356 CVLMKTESESDLILEN-----CLISMYAKCGVIDNAYNIFSNM-VSRDLVSWNSMV 405
            ++         I+       C+I ++ + G++  A+    NM +  D+++W S++
Sbjct: 538 NLMQNAHK----IIPTPSHYACMIDLFGRAGLLQEAHAFIENMPIEPDVIAWGSLL 589



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 71/278 (25%), Positives = 121/278 (43%), Gaps = 49/278 (17%)

Query: 11  VVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEM-- 68
           V+  T+ +  Y K G I+ A+ +F  +  R+VV++ AM+ G++QNG   +A  LF  M  
Sbjct: 346 VIAFTALLDGYVKLGDINPARRIFDSLRVRDVVAWTAMIVGYVQNGFNQDAMELFRSMIK 405

Query: 69  --PERNVVSWTAM-----ICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELN 121
             P+ N  +   M          D GR   A            VS N+++    ++G +N
Sbjct: 406 EGPKPNNYTLATMLSVSSSLASLDHGRQIHASATRSGNASSVSVS-NALITMYAKSGSIN 464

Query: 122 EARKVFNSMPIK-NVISWNAMIAGYVECCMMGEAIVLFEEMEERNV----VTWTSMISGY 176
           +AR VFN +  K + I+W +MI    +  +  EA+ LFE M E  +    +T+  ++S  
Sbjct: 465 DARWVFNLIHWKRDTITWTSMIIALAQHGLGEEALTLFERMLENGIKPDHITYVGVLSAC 524

Query: 177 CRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQ 236
              G VE+G   +  M   + +  T                                +  
Sbjct: 525 THVGLVEQGRSYYNLMQNAHKIIPTP-------------------------------SHY 553

Query: 237 SCNSMINGYIRFGRLEEAQNLFDTVPVR-DEISWTSMI 273
           +C  MI+ + R G L+EA    + +P+  D I+W S++
Sbjct: 554 AC--MIDLFGRAGLLQEAHAFIENMPIEPDVIAWGSLL 589



 Score = 56.2 bits (134), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 55/109 (50%), Gaps = 4/109 (3%)

Query: 351 GRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSH 410
           G+ IH  ++K      + L N L++ YAK G I +A+ +F  M  + + SWN ++ G++ 
Sbjct: 32  GKSIHARIIKAGLHLGVFLMNNLMNFYAKTGFIYDAHRVFDEMPVKSVFSWNIILSGYAK 91

Query: 411 HGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAM 459
            G   E  +VFE M E    P+SV++  ++   +  G       +F  M
Sbjct: 92  GGRLEEAHRVFEEMPE----PDSVSWTAMIVGYNQMGQFENAIGMFREM 136



 Score = 41.2 bits (95), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 43/175 (24%), Positives = 79/175 (45%), Gaps = 15/175 (8%)

Query: 6   HPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNV----VSYNAMLSGFLQNGRLSEA 61
           H K   +  TS I   ++ G  +EA  LF+ M +  +    ++Y  +LS     G + + 
Sbjct: 474 HWKRDTITWTSMIIALAQHGLGEEALTLFERMLENGIKPDHITYVGVLSACTHVGLVEQG 533

Query: 62  RRLFEEMPERNVV-----SWTAMICGLADAGRVCEARKLFEEMP-ERNVVSWNSMVVG-- 113
           R  +  M   + +      +  MI     AG + EA    E MP E +V++W S++    
Sbjct: 534 RSYYNLMQNAHKIIPTPSHYACMIDLFGRAGLLQEAHAFIENMPIEPDVIAWGSLLASCK 593

Query: 114 LIRNGELNE--ARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNV 166
           + +N EL E  A ++    P +N  +++A+   Y  C     A  + + M+++ V
Sbjct: 594 VHKNVELAEVAAERLLLIEP-ENSGAYSALANVYSACGQWENAANIRKSMKDKGV 647


>gi|356528451|ref|XP_003532816.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Glycine max]
          Length = 579

 Score =  362 bits (930), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 196/560 (35%), Positives = 310/560 (55%), Gaps = 40/560 (7%)

Query: 40  RNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEM 99
           R+V   N  +    + G++  AR+LF+EM  ++VV+W +M+      G +  ++ LF  M
Sbjct: 27  RDVYHANLDIVALSRAGKVDAARKLFDEMATKDVVTWNSMLSAYWQNGLLQRSKALFHSM 86

Query: 100 PERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFE 159
           P RNVVSWNS++   ++N  L +A +   + P KN  S+NA+I+G   C  M +A  LFE
Sbjct: 87  PLRNVVSWNSIIAACVQNDNLQDAFRYLAAAPEKNAASYNAIISGLARCGRMKDAQRLFE 146

Query: 160 EMEERNVVTWTSMISGYCRA-GEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLL 218
            M   NVV++T+M+ GY R  G +     LF  MPR+N VSW  MI G   N        
Sbjct: 147 AMPCPNVVSYTAMVDGYARVEGGIGRARALFEAMPRRNSVSWVVMINGLVEN-------- 198

Query: 219 LFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLS 278
                 G+C                        EEA  +F  +P +++++ T+MI G+  
Sbjct: 199 ------GLC------------------------EEAWEVFVRMPQKNDVARTAMITGFCK 228

Query: 279 VGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVL 338
            G++ +A  LF  +  RD V+W  +++G  QN    EA  LF +M   G+ P + TF  +
Sbjct: 229 EGRMEDARDLFQEIRCRDLVSWNIIMTGYAQNGRGEEALNLFSQMIRTGMQPDDLTFVSV 288

Query: 339 FGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDL 398
           F A  + A+++ G + H +L+K   +SDL + N LI++++KCG I ++  +F  +   DL
Sbjct: 289 FIACASLASLEEGSKAHALLIKHGFDSDLSVCNALITVHSKCGGIVDSELVFGQISHPDL 348

Query: 399 VSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNA 458
           VSWN+++  F+ HGL ++    F+ M+     P+ +TFL +LSAC  AG V+    LF+ 
Sbjct: 349 VSWNTIIAAFAQHGLYDKARSYFDQMVTVSVQPDGITFLSLLSACCRAGKVNESMNLFSL 408

Query: 459 MFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNA 518
           M D Y I P  EHY  +++++ RAG+++ A + +  +PF+ D  IWGA+L AC     N 
Sbjct: 409 MVDNYGIPPRSEHYACLVDVMSRAGQLQRACKIINEMPFKADSSIWGAVLAACS-VHLNV 467

Query: 519 EIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMR 578
           E+ E AA+R+L LDP N+ A+V+L NIYAA+G+  + H++R+ M  +GV+K    SWL  
Sbjct: 468 ELGELAARRILNLDPFNSGAYVMLSNIYAAAGKWKDVHRIRVLMKEQGVKKQTAYSWLQI 527

Query: 579 NGGIQMFLSGDKIPAQVAEI 598
                 F+ GD     + +I
Sbjct: 528 GNKTHYFVGGDPSHPNINDI 547



 Score =  159 bits (402), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 113/370 (30%), Positives = 182/370 (49%), Gaps = 46/370 (12%)

Query: 11  VVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVS-------------------------- 44
           VV   S ++ Y + G +  +KALF  MP RNVVS                          
Sbjct: 60  VVTWNSMLSAYWQNGLLQRSKALFHSMPLRNVVSWNSIIAACVQNDNLQDAFRYLAAAPE 119

Query: 45  -----YNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADA-GRVCEARKLFEE 98
                YNA++SG  + GR+ +A+RLFE MP  NVVS+TAM+ G A   G +  AR LFE 
Sbjct: 120 KNAASYNAIISGLARCGRMKDAQRLFEAMPCPNVVSYTAMVDGYARVEGGIGRARALFEA 179

Query: 99  MPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLF 158
           MP RN VSW  M+ GL+ NG   EA +VF  MP KN ++  AMI G+ +   M +A  LF
Sbjct: 180 MPRRNSVSWVVMINGLVENGLCEEAWEVFVRMPQKNDVARTAMITGFCKEGRMEDARDLF 239

Query: 159 EEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPR-----KNVVSWTAMIGGFAWNGFH 213
           +E+  R++V+W  +++GY + G  EE   LF +M R      ++   +  I   +     
Sbjct: 240 QEIRCRDLVSWNIIMTGYAQNGRGEEALNLFSQMIRTGMQPDDLTFVSVFIACASLASLE 299

Query: 214 KESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMI 273
           + S    + +K    +G + ++  CN++I  + + G + +++ +F  +   D +SW ++I
Sbjct: 300 EGSKAHALLIK----HGFDSDLSVCNALITVHSKCGGIVDSELVFGQISHPDLVSWNTII 355

Query: 274 DGYLSVGQVSNAYYLFHNM----PDRDAVAWTAMISGLVQNELFVEATYLFMEM-RAHGV 328
             +   G    A   F  M       D + + +++S   +     E+  LF  M   +G+
Sbjct: 356 AAFAQHGLYDKARSYFDQMVTVSVQPDGITFLSLLSACCRAGKVNESMNLFSLMVDNYGI 415

Query: 329 PPLNATFSVL 338
           PP +  ++ L
Sbjct: 416 PPRSEHYACL 425



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/134 (25%), Positives = 63/134 (47%), Gaps = 9/134 (6%)

Query: 363 SESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFE 422
           S  D+   N  I   ++ G +D A  +F  M ++D+V+WNSM+  +  +GL   +  +F 
Sbjct: 25  STRDVYHANLDIVALSRAGKVDAARKLFDEMATKDVVTWNSMLSAYWQNGLLQRSKALFH 84

Query: 423 SMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRA 482
           SM       N V++  I++AC     +   +    A       +     Y ++I+ L R 
Sbjct: 85  SM----PLRNVVSWNSIIAACVQNDNLQDAFRYLAA-----APEKNAASYNAIISGLARC 135

Query: 483 GKIKEAEEFVLRLP 496
           G++K+A+     +P
Sbjct: 136 GRMKDAQRLFEAMP 149


>gi|148906747|gb|ABR16520.1| unknown [Picea sitchensis]
          Length = 644

 Score =  360 bits (925), Expect = 8e-97,   Method: Compositional matrix adjust.
 Identities = 205/616 (33%), Positives = 335/616 (54%), Gaps = 53/616 (8%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNV----VSYNAMLSGFLQNGRLSEARRLFEEMPE--- 70
           +    K+G + EA  + Q M +  +     +Y+++L G L    L +A+ L   M +   
Sbjct: 36  VKSLCKQGRLREALHILQDMVENGIWPHSSTYDSLLQGCLNAKSLPDAKLLHAHMIQTQF 95

Query: 71  --RNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFN 128
             +++     ++      G + EAR++F+EMP +NVVSW +M+    R+    EA   F 
Sbjct: 96  ECQDISLGNKLVSIYVKLGSLVEARRVFDEMPVKNVVSWTAMIAAYARHEHGQEALGFFY 155

Query: 129 SMPI------------------------------------KNVISWNAMIAGYVECCMMG 152
            M                                       NV   N ++  Y +   + 
Sbjct: 156 EMQDVGIQPNHFTFASILPACTDLEVLGEFHDEIVKGGFESNVFVGNGLVDMYAKRGCIE 215

Query: 153 EAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGF 212
            A  LF++M +R+VV+W +MI+GY + G +E+   LF+ +P+++V++W  M+ G+A  G 
Sbjct: 216 FARELFDKMPQRDVVSWNAMIAGYVQNGLIEDALKLFQEIPKRDVITWNTMMAGYAQCGD 275

Query: 213 HKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSM 272
            + ++ LF +M          N+ S N+MI GY++ G ++EA  LF  +P R+ ISW ++
Sbjct: 276 VENAVELFEKMP-------EQNLVSWNTMIAGYVQNGSVKEAFKLFQIMPERNVISWNAV 328

Query: 273 IDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLN 332
           I G+   GQV  A  LF  MP+ + V+W AMI+G  QN     A  LF +M+   + P  
Sbjct: 329 ISGFAQNGQVEEALKLFKTMPECNVVSWNAMIAGYSQNGQAENALKLFGQMQMVDMKPNT 388

Query: 333 ATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSN 392
            TF+++  A  A A ++ G + H V++++  +SD+++ N L+ MYAKCG I++A  +F  
Sbjct: 389 ETFAIVLPACAALAVLEQGNEAHEVVIRSGFQSDVLVGNTLVGMYAKCGSIEDARKVFDR 448

Query: 393 MVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRG 452
           M  +D  S ++M++G++ +G + E+L++FE M  +G  P+ VTF+G+LSAC HAGLV  G
Sbjct: 449 MRQQDSASLSAMIVGYAINGCSKESLELFEQMQFTGLKPDRVTFVGVLSACCHAGLVDEG 508

Query: 453 WELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACG 512
            + F+ M   Y I P  EHY  MI+LLGRAG   EA + + ++P +PD  +WG+LL AC 
Sbjct: 509 RQYFDIMTRFYHITPAMEHYGCMIDLLGRAGCFDEANDLINKMPIKPDADMWGSLLSACR 568

Query: 513 FCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPG 572
               N ++ E  A+ L+ L+P N   +V+L NIYAA+GR  +   +R  M  + V+K  G
Sbjct: 569 -THNNIDLGEKVAQHLIALNPQNPAPYVLLSNIYAAAGRWDDIGSVRNRMKDRKVKKKLG 627

Query: 573 CSWLMRNGGIQMFLSG 588
           CSW++    +  FL G
Sbjct: 628 CSWIVIKKQVHAFLVG 643



 Score =  183 bits (465), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 129/439 (29%), Positives = 210/439 (47%), Gaps = 88/439 (20%)

Query: 7   PKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFE 66
           P+  VV   + I  Y + G I++A  LFQ +P+R+V+++N M++G+ Q G +  A  LFE
Sbjct: 225 PQRDVVSWNAMIAGYVQNGLIEDALKLFQEIPKRDVITWNTMMAGYAQCGDVENAVELFE 284

Query: 67  EMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKV 126
           +MPE+N+VSW  MI G    G V EA KLF+ MPERNV+SWN+++ G  +NG++ EA K+
Sbjct: 285 KMPEQNLVSWNTMIAGYVQNGSVKEAFKLFQIMPERNVISWNAVISGFAQNGQVEEALKL 344

Query: 127 FNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEME------------------------ 162
           F +MP  NV+SWNAMIAGY +      A+ LF +M+                        
Sbjct: 345 FKTMPECNVVSWNAMIAGYSQNGQAENALKLFGQMQMVDMKPNTETFAIVLPACAALAVL 404

Query: 163 ---------------ERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGF 207
                          + +V+   +++  Y + G +E+   +F RM +++  S +AMI G+
Sbjct: 405 EQGNEAHEVVIRSGFQSDVLVGNTLVGMYAKCGSIEDARKVFDRMRQQDSASLSAMIVGY 464

Query: 208 AWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEI 267
           A NG  KESL LF +M+     G   +  +   +++     G ++E +  FD +     I
Sbjct: 465 AINGCSKESLELFEQMQF---TGLKPDRVTFVGVLSACCHAGLVDEGRQYFDIMTRFYHI 521

Query: 268 S-----WTSMIDGYLSVGQVSNAYYLFHNMPDR-DAVAWTAMISGLVQNELFVEATYLFM 321
           +     +  MID     G    A  L + MP + DA  W +++S                
Sbjct: 522 TPAMEHYGCMIDLLGRAGCFDEANDLINKMPIKPDADMWGSLLSAC-------------- 567

Query: 322 EMRAHGVPPLNATFSVLFGAAGATANIDLGRQI--HCVLMKTESESDLILENCLISMYAK 379
             R H                    NIDLG ++  H + +  ++ +  +L   L ++YA 
Sbjct: 568 --RTHN-------------------NIDLGEKVAQHLIALNPQNPAPYVL---LSNIYAA 603

Query: 380 CGVIDNAYNIFSNMVSRDL 398
            G  D+  ++ + M  R +
Sbjct: 604 AGRWDDIGSVRNRMKDRKV 622



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 133/500 (26%), Positives = 216/500 (43%), Gaps = 85/500 (17%)

Query: 108 NSMVVGLIRNGELNEARKVFNSMPIKNVI-----SWNAMIAGYVECCMMGEAIVLFEEM- 161
           + +V  L + G L EA  +   M ++N I     ++++++ G +    + +A +L   M 
Sbjct: 33  DGLVKSLCKQGRLREALHILQDM-VENGIWPHSSTYDSLLQGCLNAKSLPDAKLLHAHMI 91

Query: 162 ----EERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESL 217
               E +++     ++S Y + G + E   +F  MP KNVVSWTAMI  +A +   +E+L
Sbjct: 92  QTQFECQDISLGNKLVSIYVKLGSLVEARRVFDEMPVKNVVSWTAMIAAYARHEHGQEAL 151

Query: 218 LLFIEMKG-----------------------------ICDNGNNCNVQSCNSMINGYIRF 248
             F EM+                              I   G   NV   N +++ Y + 
Sbjct: 152 GFFYEMQDVGIQPNHFTFASILPACTDLEVLGEFHDEIVKGGFESNVFVGNGLVDMYAKR 211

Query: 249 GRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLV 308
           G +E A+ LFD +P RD +SW +MI GY+  G + +A  LF  +P RD + W  M++G  
Sbjct: 212 GCIEFARELFDKMPQRDVVSWNAMIAGYVQNGLIEDALKLFQEIPKRDVITWNTMMAGYA 271

Query: 309 QNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLI 368
           Q      A  LF +M    +   N         AG   N  +       L +   E ++I
Sbjct: 272 QCGDVENAVELFEKMPEQNLVSWNTMI------AGYVQNGSVKEAFK--LFQIMPERNVI 323

Query: 369 LENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESG 428
             N +IS +A+ G ++ A  +F  M   ++VSWN+M+ G+S +G A   LK+F  M    
Sbjct: 324 SWNAVISGFAQNGQVEEALKLFKTMPECNVVSWNAMIAGYSQNGQAENALKLFGQMQMVD 383

Query: 429 THPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEA 488
             PN+ TF  +L AC+   ++ +G                                  EA
Sbjct: 384 MKPNTETFAIVLPACAALAVLEQG---------------------------------NEA 410

Query: 489 EEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAA 548
            E V+R  F+ D  +   L+G    C G+ E A     R+ + D  +  A +V    YA 
Sbjct: 411 HEVVIRSGFQSDVLVGNTLVGMYAKC-GSIEDARKVFDRMRQQDSASLSAMIVG---YAI 466

Query: 549 SGRHVEEHKLRMDMGLKGVR 568
           +G   E  +L   M   G++
Sbjct: 467 NGCSKESLELFEQMQFTGLK 486


>gi|302767812|ref|XP_002967326.1| hypothetical protein SELMODRAFT_30579 [Selaginella moellendorffii]
 gi|300165317|gb|EFJ31925.1| hypothetical protein SELMODRAFT_30579 [Selaginella moellendorffii]
          Length = 569

 Score =  359 bits (922), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 190/568 (33%), Positives = 310/568 (54%), Gaps = 29/568 (5%)

Query: 11  VVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPE 70
           +V   + IT Y++ G +  A+A+F  MP RN VS+NA++ G  Q    + A+++F+ MP+
Sbjct: 2   LVAWNAMITAYAQNGNLQVAQAMFFRMPARNFVSWNAIIDGCAQGQDEALAKKVFDSMPQ 61

Query: 71  RNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSM 130
           R VVSWTAM+   + +GR+ EAR L  +MP  N+VSWN M+     N  + +A++ F+  
Sbjct: 62  REVVSWTAMVATYSQSGRLEEARALLSKMPALNIVSWNVMIQAFADNLLVEDAKERFDRA 121

Query: 131 PIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGE--VEEGYCL 188
           P  + +SWNA+I  Y +   +  A   F+ M +R+VV+W +MI  Y + G+  +++   +
Sbjct: 122 PEHDFVSWNAIITAYAQTSQIFLARAAFDRMPQRDVVSWATMIQSYAQEGQPSMDQAKEI 181

Query: 189 FRRMPRKNVVSWTAMIGGFAWNGFHKESLLLF------------------------IEMK 224
           F R P++NVVSW  MI G++ +G  K++  +F                         E K
Sbjct: 182 FDRAPQRNVVSWNVMITGYSASGRIKQAKAVFDTMPQKDVISWAALVAGYLQNQQLAEAK 241

Query: 225 GICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSN 284
            + D     N   CN+++  +    R+ E ++LFD +P R   SW++M+ GY   G  ++
Sbjct: 242 RVFDRMPATNAVCCNTVMASFAGADRMPETRSLFDRMPERTLASWSTMLGGYAQSGHTAS 301

Query: 285 AYYLFHNMP--DRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAA 342
           A   F  MP  D D V+W A+I+G + N L   A  LF+EM   G  P  A+++    A 
Sbjct: 302 AKSFFDRMPQRDHDLVSWNALIAGHLDNGLDERALQLFLEMDRRGCSPDPASYASALAAC 361

Query: 343 GATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWN 402
              A++   R IH  L K   E+D  + N L+  Y K G + +A  +F ++ S D+V+WN
Sbjct: 362 AGLASLGAARDIHWRLCKAGLETDAFVHNALVDFYGKSGRMADAELVFQSLASVDVVTWN 421

Query: 403 SMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDV 462
           ++  GFS  G     + +  ++ + G  P+ +TFL +L+A  HAGLV  G   F AM + 
Sbjct: 422 ALAAGFSRQGSYRLVVDLLWAIKDQGLEPDGITFLALLAAYGHAGLVDHGRRAFAAMVES 481

Query: 463 YKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAE 522
           Y+I+ G EHY  ++++LGRA +++EA   V  +P  P    W  +L  C   + N ++A 
Sbjct: 482 YRIEAGIEHYHCLVDMLGRANRLEEALAEVAAMPHRPSSVTWTTVLSTCVKWK-NLDVAS 540

Query: 523 HAAKRLLELDPLNAPAHVVLCNIYAASG 550
            A + LL +DP    A+V++ N+Y ++G
Sbjct: 541 VAFESLLGIDPDGPAAYVLMANVYGSAG 568



 Score =  145 bits (366), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 103/388 (26%), Positives = 185/388 (47%), Gaps = 56/388 (14%)

Query: 7   PKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFE 66
           P+  VV     IT YS  G I +AKA+F  MPQ++V+S+ A+++G+LQN +L+EA+R+F+
Sbjct: 186 PQRNVVSWNVMITGYSASGRIKQAKAVFDTMPQKDVISWAALVAGYLQNQQLAEAKRVFD 245

Query: 67  EMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKV 126
            MP  N V    ++   A A R+ E R LF+ MPER + SW++M+ G  ++G    A+  
Sbjct: 246 RMPATNAVCCNTVMASFAGADRMPETRSLFDRMPERTLASWSTMLGGYAQSGHTASAKSF 305

Query: 127 FNSMPIK--NVISWNAMIAGYVECCMMGEAIVLFEEMEERNV------------------ 166
           F+ MP +  +++SWNA+IAG+++  +   A+ LF EM+ R                    
Sbjct: 306 FDRMPQRDHDLVSWNALIAGHLDNGLDERALQLFLEMDRRGCSPDPASYASALAACAGLA 365

Query: 167 -------VTW--------------TSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIG 205
                  + W               +++  Y ++G + +   +F+ +   +VV+W A+  
Sbjct: 366 SLGAARDIHWRLCKAGLETDAFVHNALVDFYGKSGRMADAELVFQSLASVDVVTWNALAA 425

Query: 206 GFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRD 265
           GF+  G ++   L+   +  I D G   +  +  +++  Y   G ++  +  F  +    
Sbjct: 426 GFSRQGSYR---LVVDLLWAIKDQGLEPDGITFLALLAAYGHAGLVDHGRRAFAAMVESY 482

Query: 266 EIS-----WTSMIDGYLSVGQVSNAYYLFHNMPDR-DAVAWTAMISGLVQNELFVEATYL 319
            I      +  ++D      ++  A      MP R  +V WT ++S  V+ +    A+  
Sbjct: 483 RIEAGIEHYHCLVDMLGRANRLEEALAEVAAMPHRPSSVTWTTVLSTCVKWKNLDVASVA 542

Query: 320 FMEMRAHGVPPLNATFSVL----FGAAG 343
           F  +   G+ P      VL    +G+AG
Sbjct: 543 FESLL--GIDPDGPAAYVLMANVYGSAG 568



 Score = 44.7 bits (104), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 37/145 (25%), Positives = 68/145 (46%), Gaps = 10/145 (6%)

Query: 366 DLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESML 425
           DL+  N +I+ YA+ G +  A  +F  M +R+ VSWN+++ G +         KVF+SM 
Sbjct: 1   DLVAWNAMITAYAQNGNLQVAQAMFFRMPARNFVSWNAIIDGCAQGQDEALAKKVFDSMP 60

Query: 426 ESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKI 485
           +       V++  +++  S +G +     L + M  +  +      +  MI        +
Sbjct: 61  QREV----VSWTAMVATYSQSGRLEEARALLSKMPALNIVS-----WNVMIQAFADNLLV 111

Query: 486 KEAEEFVLRLPFEPDHRIWGALLGA 510
           ++A+E   R P E D   W A++ A
Sbjct: 112 EDAKERFDRAP-EHDFVSWNAIITA 135


>gi|357464699|ref|XP_003602631.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355491679|gb|AES72882.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 705

 Score =  359 bits (921), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 207/607 (34%), Positives = 334/607 (55%), Gaps = 33/607 (5%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWT 77
           +  Y K GF+++A+ +F  M QRN  S+NA+L    + G L EA  LF+ MPER+  SW 
Sbjct: 61  VDVYGKCGFLEDARKVFDHMQQRNTFSWNAVLGALTKFGALDEALNLFKCMPERDQCSWN 120

Query: 78  AMICGLADAGRVCEARKLFEEMPERNVV----SWNS----------MVVGLIRNGELNEA 123
           AM+ G A   R  EA +   +M   + V    S+ S          + +G+  +G + ++
Sbjct: 121 AMVSGFAQRDRFEEALRFVVDMHSEDFVLNEYSFGSALSACAGLMDLSIGVQIHGLIAKS 180

Query: 124 RKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVE 183
           R   +      V   +A++  Y +C ++  A   F++M+ RN+V+W S+I+ Y + G   
Sbjct: 181 RYSLD------VYMGSALVDMYSKCRVVASAQRAFDDMDVRNIVSWNSLITCYEQNGPAG 234

Query: 184 EGYCLFRRM----PRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCN 239
           +   +F RM       + ++  ++    A     +E L   I  + +  +    ++   N
Sbjct: 235 KALEVFVRMMNCGIEPDEITLASVASACASLSAIREGLQ--IHARVMKHDKYRNDLVLGN 292

Query: 240 SMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVA 299
           ++++ Y +  R+ EA+ +FD +P+RD +S TSM+ GY     V  A  +F NM +R+ V+
Sbjct: 293 ALVDMYAKCRRVNEARLVFDRMPLRDVVSETSMVSGYAKASSVKAARLMFSNMMERNVVS 352

Query: 300 WTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLM 359
           W A+I+G  QN    EA  LF+ ++   + P + TF  L  A    A++ LGRQ H  ++
Sbjct: 353 WNALIAGYTQNGENEEAVRLFLLLKRESIWPTHYTFGNLLNACANLADLKLGRQAHTHIL 412

Query: 360 K------TESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGL 413
           K      +  +SD+ + N LI MY KCG++++   +F  M+ RD VSWN+M++G++ +G 
Sbjct: 413 KHGFWFKSGEDSDIFVGNSLIDMYMKCGLVEDGRLVFERMLERDNVSWNAMIVGYAQNGY 472

Query: 414 ANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYV 473
             E L++F  ML SG  P+ VT +G+LSACSHAGLV  G   F +M   + + P  +HY 
Sbjct: 473 GTEALEIFREMLVSGERPDHVTMIGVLSACSHAGLVEEGRCYFQSMTIEHGLVPVKDHYT 532

Query: 474 SMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDP 533
            M++LLGRAG + EA   +  +P EPD  +WG+LL AC    GN  + ++ A+RLLE+DP
Sbjct: 533 CMVDLLGRAGCLDEANNLIQTMPMEPDAVVWGSLLAACKV-HGNITLGKYVAERLLEIDP 591

Query: 534 LNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPA 593
           LN+  +V+L N+YA  GR  +  ++R  M   GV K PGCSW+     + +F+  DK   
Sbjct: 592 LNSGPYVLLSNMYAELGRWKDVVRVRKQMRQMGVIKQPGCSWISIQSHLHVFMVKDKRHP 651

Query: 594 QVAEILL 600
              +I L
Sbjct: 652 HKKDIYL 658



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 70/259 (27%), Positives = 132/259 (50%)

Query: 239 NSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAV 298
           N +++ Y + G LE+A+ +FD +  R+  SW +++      G +  A  LF  MP+RD  
Sbjct: 58  NRLVDVYGKCGFLEDARKVFDHMQQRNTFSWNAVLGALTKFGALDEALNLFKCMPERDQC 117

Query: 299 AWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVL 358
           +W AM+SG  Q + F EA    ++M +        +F     A     ++ +G QIH ++
Sbjct: 118 SWNAMVSGFAQRDRFEEALRFVVDMHSEDFVLNEYSFGSALSACAGLMDLSIGVQIHGLI 177

Query: 359 MKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETL 418
            K+    D+ + + L+ MY+KC V+ +A   F +M  R++VSWNS++  +  +G A + L
Sbjct: 178 AKSRYSLDVYMGSALVDMYSKCRVVASAQRAFDDMDVRNIVSWNSLITCYEQNGPAGKAL 237

Query: 419 KVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINL 478
           +VF  M+  G  P+ +T   + SAC+    +  G ++   +    K +       +++++
Sbjct: 238 EVFVRMMNCGIEPDEITLASVASACASLSAIREGLQIHARVMKHDKYRNDLVLGNALVDM 297

Query: 479 LGRAGKIKEAEEFVLRLPF 497
             +  ++ EA     R+P 
Sbjct: 298 YAKCRRVNEARLVFDRMPL 316



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 113/440 (25%), Positives = 197/440 (44%), Gaps = 56/440 (12%)

Query: 9   SLVVHLTSSITK-YSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEE 67
           SL V++ S++   YSK   +  A+  F  M  RN+VS+N++++ + QNG   +A  +F  
Sbjct: 183 SLDVYMGSALVDMYSKCRVVASAQRAFDDMDVRNIVSWNSLITCYEQNGPAGKALEVFVR 242

Query: 68  M------PERNVVSWTAMICGLADA---GRVCEARKLFEEMPERNVVSWNSMVVGLIRNG 118
           M      P+   ++  A  C    A   G    AR +  +    ++V  N++V    +  
Sbjct: 243 MMNCGIEPDEITLASVASACASLSAIREGLQIHARVMKHDKYRNDLVLGNALVDMYAKCR 302

Query: 119 ELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCR 178
            +NEAR VF+ MP+++V+S  +M++GY +   +  A ++F  M ERNVV+W ++I+GY +
Sbjct: 303 RVNEARLVFDRMPLRDVVSETSMVSGYAKASSVKAARLMFSNMMERNVVSWNALIAGYTQ 362

Query: 179 AGEVEEGYCLFRRMPRKNVVSWTAMIG-------GFAWNGFHKESLLLFIEMKGICDNGN 231
            GE EE   LF  + R+++       G         A     +++    ++      +G 
Sbjct: 363 NGENEEAVRLFLLLKRESIWPTHYTFGNLLNACANLADLKLGRQAHTHILKHGFWFKSGE 422

Query: 232 NCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHN 291
           + ++   NS+I+ Y++ G +E+ + +F+ +  RD +SW +MI GY               
Sbjct: 423 DSDIFVGNSLIDMYMKCGLVEDGRLVFERMLERDNVSWNAMIVGY--------------- 467

Query: 292 MPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLG 351
                            QN    EA  +F EM   G  P + T   +  A      ++ G
Sbjct: 468 ----------------AQNGYGTEALEIFREMLVSGERPDHVTMIGVLSACSHAGLVEEG 511

Query: 352 RQIHCVLMKTESESDLI----LENCLISMYAKCGVIDNAYNIFSNM-VSRDLVSWNSMVM 406
           R   C       E  L+       C++ +  + G +D A N+   M +  D V W S++ 
Sbjct: 512 R---CYFQSMTIEHGLVPVKDHYTCMVDLLGRAGCLDEANNLIQTMPMEPDAVVWGSLLA 568

Query: 407 GFSHHGLANETLKVFESMLE 426
               HG       V E +LE
Sbjct: 569 ACKVHGNITLGKYVAERLLE 588



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 55/95 (57%)

Query: 332 NATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFS 391
           ++ F+ L      + ++   R +H  ++KT+  S++ ++N L+ +Y KCG +++A  +F 
Sbjct: 19  SSPFAKLLDTCVKSKSVFEARLVHARIIKTQFSSEIFIQNRLVDVYGKCGFLEDARKVFD 78

Query: 392 NMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLE 426
           +M  R+  SWN+++   +  G  +E L +F+ M E
Sbjct: 79  HMQQRNTFSWNAVLGALTKFGALDEALNLFKCMPE 113


>gi|357516843|ref|XP_003628710.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355522732|gb|AET03186.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 748

 Score =  359 bits (921), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 197/596 (33%), Positives = 337/596 (56%), Gaps = 14/596 (2%)

Query: 6   HPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLF 65
           +P++ +  L + I+ Y+K G I  A  +F  MP  N+ S+N +LS + + GR+SE   LF
Sbjct: 41  YPETFL--LNNLISSYAKLGSIPYACKVFDQMPHPNLYSWNTILSAYSKLGRVSEMEYLF 98

Query: 66  EEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPER------NVVSWNSMVVGLIRNGE 119
           + MP R+ VSW ++I G A  G + ++ K +  M +       N ++++++++   + G 
Sbjct: 99  DAMPRRDGVSWNSLISGYAGCGLIYQSVKAYNLMLKNDGSFNLNRITFSTLLILASKRGC 158

Query: 120 LNEARKVFNSMPIKNVISW----NAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISG 175
           +   R++   +     +S+    + ++  Y +  M+  A  +F+E+ E+NVV + ++I G
Sbjct: 159 VKLGRQIHGHVVKFGFMSYVFVGSPLVDMYSKMGMISCARKVFDELPEKNVVMYNTLIMG 218

Query: 176 YCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNV 235
             R G VE+   LF  M  ++ +SWT+MI GF  NG  ++++ +F EMK      +    
Sbjct: 219 LMRCGRVEDSKRLFFEMRERDSISWTSMITGFTQNGLDRDAIDIFREMKLENLQMDQYTF 278

Query: 236 QSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTS-MIDGYLSVGQVSNAYYLFHNMPD 294
            S  +   G +     ++          +D I   S ++D Y     + +A  +F  M  
Sbjct: 279 GSVLTACGGVMALQEGKQVHAYIIRTDYKDNIFVASALVDMYCKCKNIKSAEAVFKKMTC 338

Query: 295 RDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQI 354
           ++ V+WTAM+ G  QN    EA   F +M+ +G+ P + T   +  +    A+++ G Q 
Sbjct: 339 KNVVSWTAMLVGYGQNGYSEEAVKTFSDMQKYGIEPDDFTLGSVISSCANLASLEEGAQF 398

Query: 355 HCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLA 414
           H   + +   S + + N L+++Y KCG I++++ +F+ +  +D V+W ++V G++  G A
Sbjct: 399 HARALTSGLISFITVSNALVTLYGKCGSIEDSHRLFNEISFKDEVTWTALVSGYAQFGKA 458

Query: 415 NETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVS 474
           NET+ +FESML  G  P+ VTF+G+LSACS AGLV +G ++F +M + + I P  +HY  
Sbjct: 459 NETIGLFESMLAHGLKPDKVTFIGVLSACSRAGLVEKGNQIFESMINEHGIVPIQDHYTC 518

Query: 475 MINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPL 534
           MI+L  RAG+I+EA  F+ ++PF PD   W  LL +C F  GN +I + AA+ L+ELDP 
Sbjct: 519 MIDLFSRAGRIEEARNFINKMPFSPDAISWATLLSSCRF-YGNMDIGKWAAEFLMELDPH 577

Query: 535 NAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDK 590
           N  ++V+L ++YAA G+  E  +LR DM  KG+RK PGCSW+     + +F + DK
Sbjct: 578 NTASYVLLSSVYAAKGKWEEVARLRKDMRDKGLRKEPGCSWIKYKNQVHVFSADDK 633



 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 77/285 (27%), Positives = 130/285 (45%), Gaps = 50/285 (17%)

Query: 4   RNHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARR 63
           R   K  +   ++ +  Y K   I  A+A+F+ M  +NVVS+ AML G+ QNG   EA +
Sbjct: 303 RTDYKDNIFVASALVDMYCKCKNIKSAEAVFKKMTCKNVVSWTAMLVGYGQNGYSEEAVK 362

Query: 64  LFEEMPER----------NVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVG 113
            F +M +           +V+S  A +  L +  +   AR L   +     VS N++V  
Sbjct: 363 TFSDMQKYGIEPDDFTLGSVISSCANLASLEEGAQF-HARALTSGLISFITVS-NALVTL 420

Query: 114 LIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNV----VTW 169
             + G + ++ ++FN +  K+ ++W A+++GY +     E I LFE M    +    VT+
Sbjct: 421 YGKCGSIEDSHRLFNEISFKDEVTWTALVSGYAQFGKANETIGLFESMLAHGLKPDKVTF 480

Query: 170 TSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDN 229
             ++S   RAG VE+G  +F  M                      E  ++ I+    C  
Sbjct: 481 IGVLSACSRAGLVEKGNQIFESMI--------------------NEHGIVPIQDHYTC-- 518

Query: 230 GNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVR-DEISWTSMI 273
                      MI+ + R GR+EEA+N  + +P   D ISW +++
Sbjct: 519 -----------MIDLFSRAGRIEEARNFINKMPFSPDAISWATLL 552



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 78/348 (22%), Positives = 154/348 (44%), Gaps = 45/348 (12%)

Query: 256 NLFDTVPVRDEISWTSMIDGYL-------------------------------SVGQVSN 284
           ++  T+P  +     ++I  Y                                 +G+VS 
Sbjct: 34  HIIKTLPYPETFLLNNLISSYAKLGSIPYACKVFDQMPHPNLYSWNTILSAYSKLGRVSE 93

Query: 285 AYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLF-MEMRAHGVPPLN-ATFSVLFGAA 342
             YLF  MP RD V+W ++ISG     L  ++   + + ++  G   LN  TFS L   A
Sbjct: 94  MEYLFDAMPRRDGVSWNSLISGYAGCGLIYQSVKAYNLMLKNDGSFNLNRITFSTLLILA 153

Query: 343 GATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWN 402
                + LGRQIH  ++K    S + + + L+ MY+K G+I  A  +F  +  +++V +N
Sbjct: 154 SKRGCVKLGRQIHGHVVKFGFMSYVFVGSPLVDMYSKMGMISCARKVFDELPEKNVVMYN 213

Query: 403 SMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDV 462
           +++MG    G   ++ ++F  M E     +S+++  +++  +  GL     ++F  M  +
Sbjct: 214 TLIMGLMRCGRVEDSKRLFFEMRER----DSISWTSMITGFTQNGLDRDAIDIFREM-KL 268

Query: 463 YKIQPGPEHYVSMINLLGRAGKIKEAEE---FVLRLPFEPDHRIWGALLGACGFCEGNAE 519
             +Q     + S++   G    ++E ++   +++R  ++ +  +  AL+     C+ N +
Sbjct: 269 ENLQMDQYTFGSVLTACGGVMALQEGKQVHAYIIRTDYKDNIFVASALVDMYCKCK-NIK 327

Query: 520 IAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGV 567
            AE   K++   + ++  A +V    Y  +G   E  K   DM   G+
Sbjct: 328 SAEAVFKKMTCKNVVSWTAMLVG---YGQNGYSEEAVKTFSDMQKYGI 372



 Score = 52.4 bits (124), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 33/116 (28%), Positives = 58/116 (50%), Gaps = 4/116 (3%)

Query: 345 TANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSM 404
           T N    + +H  ++KT    +  L N LIS YAK G I  A  +F  M   +L SWN++
Sbjct: 22  THNFTKAKNLHSHIIKTLPYPETFLLNNLISSYAKLGSIPYACKVFDQMPHPNLYSWNTI 81

Query: 405 VMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMF 460
           +  +S  G  +E   +F++M       + V++  ++S  +  GL+ +  + +N M 
Sbjct: 82  LSAYSKLGRVSEMEYLFDAM----PRRDGVSWNSLISGYAGCGLIYQSVKAYNLML 133


>gi|224124638|ref|XP_002330073.1| predicted protein [Populus trichocarpa]
 gi|222871498|gb|EEF08629.1| predicted protein [Populus trichocarpa]
          Length = 793

 Score =  356 bits (914), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 209/608 (34%), Positives = 323/608 (53%), Gaps = 41/608 (6%)

Query: 27  IDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVS--WTAMI---- 80
           I+++  +F  +   N    N M+ G++Q     +A  +++ M E NV +  +T  I    
Sbjct: 76  INQSYQIFSHIENPNGFICNTMMKGYMQRNSPCKAIWVYKFMLESNVAADNYTYPILFQS 135

Query: 81  CG--LADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISW 138
           C   LA+    C    + +   + +V   N+++      G L++ARKVF+   + +++SW
Sbjct: 136 CSIRLAEFDGKCIQDHVLKVGFDSDVYIQNTLINMYAVCGNLSDARKVFDGSSVLDMVSW 195

Query: 139 NAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVV 198
           N+M+AGYV    + EA  +++ M ERNV+   SMI  + + G VEE   LF  M +K++V
Sbjct: 196 NSMLAGYVLVGNVEEAKDVYDRMPERNVIASNSMIVLFGKKGNVEEACKLFNEMKQKDLV 255

Query: 199 SWTAMIGGFAWNGFHKESLLLFIEMKG--------------------------------I 226
           SW+A+I  +  N  ++E+L+LF EM                                  +
Sbjct: 256 SWSALISCYEQNEMYEEALILFKEMNANGIMVDEVVVLSVLSACSRLLVVITGKLVHGLV 315

Query: 227 CDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAY 286
              G    V   N++I+ Y     +  AQ LF      D+ISW SMI GY+  G++  A 
Sbjct: 316 VKVGIETYVNLQNALIHMYSSCEEVVTAQKLFSESCCLDQISWNSMISGYVKCGEIEKAR 375

Query: 287 YLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATA 346
            LF +MPD+D V+W+AMISG  Q + F E   LF EM+  G  P       +  A    A
Sbjct: 376 ALFDSMPDKDNVSWSAMISGYAQQDRFTETLVLFQEMQIEGTKPDETILVSVISACTHLA 435

Query: 347 NIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVM 406
            +D G+ IH  + K   + ++IL   LI+MY K G +++A  +F  +  + + +WN++++
Sbjct: 436 ALDQGKWIHAYIRKNGLKINIILGTTLINMYMKLGCVEDALEVFKGLEEKGVSTWNALIL 495

Query: 407 GFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQ 466
           G + +GL +++LK F  M E G  PN +TF+ +L AC H GLV  G   FN+M   +KI 
Sbjct: 496 GLAMNGLVDKSLKTFSEMKEHGVTPNEITFVAVLGACRHMGLVDEGHRHFNSMIQEHKIG 555

Query: 467 PGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAK 526
           P  +HY  M++LLGRAG +KEAEE +  +P  PD   WGALLGAC    G+ E  E   +
Sbjct: 556 PNIKHYGCMVDLLGRAGMLKEAEELIESMPMAPDVSTWGALLGACKK-YGDNETGERIGR 614

Query: 527 RLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFL 586
           +L+EL P +   +V+L NIYA+ G  V+  ++R  M   GV K PGCS +  +G +  FL
Sbjct: 615 KLVELHPDHDGFNVLLSNIYASKGNWVDVLEVRGMMRQHGVVKTPGCSMIEAHGRVHEFL 674

Query: 587 SGDKIPAQ 594
           +GDK   Q
Sbjct: 675 AGDKTHPQ 682



 Score =  172 bits (436), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 125/469 (26%), Positives = 226/469 (48%), Gaps = 50/469 (10%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWT 77
           I  Y+  G + +A+ +F      ++VS+N+ML+G++  G + EA+ +++ MPERNV++  
Sbjct: 168 INMYAVCGNLSDARKVFDGSSVLDMVSWNSMLAGYVLVGNVEEAKDVYDRMPERNVIASN 227

Query: 78  AMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMP------ 131
           +MI      G V EA KLF EM ++++VSW++++    +N    EA  +F  M       
Sbjct: 228 SMIVLFGKKGNVEEACKLFNEMKQKDLVSWSALISCYEQNEMYEEALILFKEMNANGIMV 287

Query: 132 ----IKNVIS-----------------------------WNAMIAGYVECCMMGEAIVLF 158
               + +V+S                              NA+I  Y  C  +  A  LF
Sbjct: 288 DEVVVLSVLSACSRLLVVITGKLVHGLVVKVGIETYVNLQNALIHMYSSCEEVVTAQKLF 347

Query: 159 EEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLL 218
            E    + ++W SMISGY + GE+E+   LF  MP K+ VSW+AMI G+A      E+L+
Sbjct: 348 SESCCLDQISWNSMISGYVKCGEIEKARALFDSMPDKDNVSWSAMISGYAQQDRFTETLV 407

Query: 219 LFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVR----DEISWTSMID 274
           LF EM+     G   +     S+I+       L++ + +   +       + I  T++I+
Sbjct: 408 LFQEMQ---IEGTKPDETILVSVISACTHLAALDQGKWIHAYIRKNGLKINIILGTTLIN 464

Query: 275 GYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNAT 334
            Y+ +G V +A  +F  + ++    W A+I GL  N L  ++   F EM+ HGV P   T
Sbjct: 465 MYMKLGCVEDALEVFKGLEEKGVSTWNALILGLAMNGLVDKSLKTFSEMKEHGVTPNEIT 524

Query: 335 FSVLFGAAGATANIDLG-RQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNM 393
           F  + GA      +D G R  + ++ + +   ++    C++ +  + G++  A  +  +M
Sbjct: 525 FVAVLGACRHMGLVDEGHRHFNSMIQEHKIGPNIKHYGCMVDLLGRAGMLKEAEELIESM 584

Query: 394 -VSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILS 441
            ++ D+ +W +++     +G      ++   ++E   HP+   F  +LS
Sbjct: 585 PMAPDVSTWGALLGACKKYGDNETGERIGRKLVE--LHPDHDGFNVLLS 631



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 41/151 (27%), Positives = 77/151 (50%), Gaps = 10/151 (6%)

Query: 4   RNHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARR 63
           +N  K  ++  T+ I  Y K G +++A  +F+ + ++ V ++NA++ G   NG + ++ +
Sbjct: 449 KNGLKINIILGTTLINMYMKLGCVEDALEVFKGLEEKGVSTWNALILGLAMNGLVDKSLK 508

Query: 64  LFEEMPERNV----VSWTAMICGLADAGRVCEARKLFEEMPER-----NVVSWNSMVVGL 114
            F EM E  V    +++ A++      G V E  + F  M +      N+  +  MV  L
Sbjct: 509 TFSEMKEHGVTPNEITFVAVLGACRHMGLVDEGHRHFNSMIQEHKIGPNIKHYGCMVDLL 568

Query: 115 IRNGELNEARKVFNSMPI-KNVISWNAMIAG 144
            R G L EA ++  SMP+  +V +W A++  
Sbjct: 569 GRAGMLKEAEELIESMPMAPDVSTWGALLGA 599


>gi|242075862|ref|XP_002447867.1| hypothetical protein SORBIDRAFT_06g017170 [Sorghum bicolor]
 gi|241939050|gb|EES12195.1| hypothetical protein SORBIDRAFT_06g017170 [Sorghum bicolor]
          Length = 688

 Score =  355 bits (912), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 199/594 (33%), Positives = 322/594 (54%), Gaps = 50/594 (8%)

Query: 46  NAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVV 105
           N ++S + + GRL +ARR+F+E+P RN  S+ A++   A  GR  EAR LFE +P+ +  
Sbjct: 56  NTLVSTYARLGRLRDARRVFDEIPLRNTFSYNALLSAYARLGRPDEARALFEAIPDPDQC 115

Query: 106 SWNSMVVGLIRNGELN--EARKVFNSMPIKNVISWNAMIAGYVECCM------MGEAI-- 155
           S+N++V  L R+G  +  +A +   +M   + +      A  +  C        GE +  
Sbjct: 116 SYNAVVAALARHGRGHAADALRFLAAMHADDFVLNAYSFASALSACAAEKDSRTGEQVHG 175

Query: 156 VLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKE 215
           ++       +V   ++++  Y +    E+   +F  MP +NVVSW ++I  +  NG   E
Sbjct: 176 LVARSPHADDVHIRSALVDMYAKCERPEDARRVFDAMPERNVVSWNSLITCYEQNGPVGE 235

Query: 216 SLLLFIEMKGICDNGNNCNVQSC---------------------------------NSMI 242
           +L+LF+EM     + +   + S                                  N+++
Sbjct: 236 ALMLFVEMMAAGFSPDEVTLSSVMSACAGLAADREGRQVHAHMVKCDRLRDDMVLNNALV 295

Query: 243 NGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTA 302
           + Y + GR  EA+ +FD++P R  +S TS++ GY     V +A  +F  M +++ +AW  
Sbjct: 296 DMYAKCGRTWEARCIFDSMPSRSIVSETSILTGYAKSANVEDAQVVFSQMVEKNVIAWNV 355

Query: 303 MISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTE 362
           +I+   QN    EA  LF++++   + P + T+  +  A G  A++ LG+Q H  ++K  
Sbjct: 356 LIAAYAQNGEEEEAIRLFVQLKRDSIWPTHYTYGNVLNACGNIADLQLGQQAHVHVLKEG 415

Query: 363 ------SESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANE 416
                  ESD+ + N L+ MY K G ID+   +F  M +RD VSWN+M++G++ +G A +
Sbjct: 416 FRFDFGPESDVFVGNSLVDMYLKTGSIDDGAKVFERMAARDNVSWNAMIVGYAQNGRAKD 475

Query: 417 TLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMI 476
            L +FE ML S  +P+SVT +G+LSAC H+GLV  G   F++M + + I P  +HY  M+
Sbjct: 476 ALHLFERMLCSNENPDSVTMIGVLSACGHSGLVDEGRRYFHSMTEDHGITPSRDHYTCMV 535

Query: 477 NLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNA 536
           +LLGRAG +KEAEE +  +P EPD  +W +LLGAC     N E+ E  A RL ELDP N+
Sbjct: 536 DLLGRAGHLKEAEELINDMPMEPDSVLWASLLGACRL-HKNVELGEWTAGRLFELDPQNS 594

Query: 537 PAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDK 590
             +V+L N+YA  G+  E  ++R  M  +GV K PGCSW+     + +FL+ DK
Sbjct: 595 GPYVLLSNMYAEMGKWAEVFRVRRSMKDRGVSKQPGCSWIEIGRKMNVFLARDK 648



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 70/240 (29%), Positives = 117/240 (48%), Gaps = 23/240 (9%)

Query: 7   PKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFE 66
           P   +V  TS +T Y+K   +++A+ +F  M ++NV+++N +++ + QNG   EA RLF 
Sbjct: 315 PSRSIVSETSILTGYAKSANVEDAQVVFSQMVEKNVIAWNVLIAAYAQNGEEEEAIRLFV 374

Query: 67  EM------PERNVVSWTAMICG-LAD--AGRVCEARKL-----FEEMPERNVVSWNSMVV 112
           ++      P           CG +AD   G+      L     F+  PE +V   NS+V 
Sbjct: 375 QLKRDSIWPTHYTYGNVLNACGNIADLQLGQQAHVHVLKEGFRFDFGPESDVFVGNSLVD 434

Query: 113 GLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEM----EERNVVT 168
             ++ G +++  KVF  M  ++ +SWNAMI GY +     +A+ LFE M    E  + VT
Sbjct: 435 MYLKTGSIDDGAKVFERMAARDNVSWNAMIVGYAQNGRAKDALHLFERMLCSNENPDSVT 494

Query: 169 WTSMISGYCRAGEVEEGYCLFRRMPRKNVVS-----WTAMIGGFAWNGFHKESLLLFIEM 223
              ++S    +G V+EG   F  M   + ++     +T M+      G  KE+  L  +M
Sbjct: 495 MIGVLSACGHSGLVDEGRRYFHSMTEDHGITPSRDHYTCMVDLLGRAGHLKEAEELINDM 554



 Score = 75.9 bits (185), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 58/208 (27%), Positives = 100/208 (48%), Gaps = 21/208 (10%)

Query: 7   PKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFE 66
           P+S V    S +  Y K G ID+   +F+ M  R+ VS+NAM+ G+ QNGR  +A  LFE
Sbjct: 422 PESDVFVGNSLVDMYLKTGSIDDGAKVFERMAARDNVSWNAMIVGYAQNGRAKDALHLFE 481

Query: 67  EM----PERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVS-----WNSMVVGLIRN 117
            M       + V+   ++     +G V E R+ F  M E + ++     +  MV  L R 
Sbjct: 482 RMLCSNENPDSVTMIGVLSACGHSGLVDEGRRYFHSMTEDHGITPSRDHYTCMVDLLGRA 541

Query: 118 GELNEARKVFNSMPIK-NVISWNAMIAGYVECCMMGEAIVLFE-------EMEERNVVTW 169
           G L EA ++ N MP++ + + W +++      C + + + L E       E++ +N   +
Sbjct: 542 GHLKEAEELINDMPMEPDSVLWASLLGA----CRLHKNVELGEWTAGRLFELDPQNSGPY 597

Query: 170 TSMISGYCRAGEVEEGYCLFRRMPRKNV 197
             + + Y   G+  E + + R M  + V
Sbjct: 598 VLLSNMYAEMGKWAEVFRVRRSMKDRGV 625



 Score = 47.8 bits (112), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 23/104 (22%), Positives = 54/104 (51%), Gaps = 4/104 (3%)

Query: 344 ATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNS 403
           +  N+   R  H  ++K+    +  L N L+S YA+ G + +A  +F  +  R+  S+N+
Sbjct: 29  SAPNLSGARAAHARILKSPVAGETFLLNTLVSTYARLGRLRDARRVFDEIPLRNTFSYNA 88

Query: 404 MVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAG 447
           ++  ++  G  +E   +FE++ +    P+  ++  +++A +  G
Sbjct: 89  LLSAYARLGRPDEARALFEAIPD----PDQCSYNAVVAALARHG 128


>gi|359483597|ref|XP_002272690.2| PREDICTED: pentatricopeptide repeat-containing protein At5g46460,
           mitochondrial [Vitis vinifera]
          Length = 676

 Score =  355 bits (910), Expect = 5e-95,   Method: Compositional matrix adjust.
 Identities = 194/553 (35%), Positives = 314/553 (56%), Gaps = 10/553 (1%)

Query: 44  SYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERN 103
           SY +M++  L+N R+ EAR +F+++   +V  +T MI G A   R   A +LF EMP ++
Sbjct: 13  SYQSMITDHLRNQRIDEARTVFDKVSFPDVYLYTMMITGYARNYRFDHALQLFYEMPVKD 72

Query: 104 VVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEE 163
           VVSWNSM+ G     +L  ARK+F+ MP ++V+SW  MI G+++   +  A  LF +M  
Sbjct: 73  VVSWNSMIKGCFDCADLTMARKLFDEMPERSVVSWTTMINGFLQFGKIEVAEGLFYKMPF 132

Query: 164 RNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEM 223
           R++  W SMI GYC  G VE+G  LF+ MP +NV+SWT+MIGG   +G  +E+L LF +M
Sbjct: 133 RDIAAWNSMIYGYCCNGRVEDGLRLFQEMPCRNVISWTSMIGGLDQHGRSEEALGLFRQM 192

Query: 224 KGI------CDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYL 277
            G         +   C + +C    N    +  ++   ++F      D     ++I  Y 
Sbjct: 193 MGCGVEVKPTSSTYCCVITAC---ANASALYQGVQIHAHVFKLGYSFDAYISAALITFYA 249

Query: 278 SVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSV 337
           +  Q+ ++  +FH     + V WTA+++G   N    +A  +F EM   GV P  ++F+ 
Sbjct: 250 NCKQMEDSLRVFHGKLHMNVVIWTALVTGYGLNCKHEDALKVFGEMMREGVLPNQSSFTS 309

Query: 338 LFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRD 397
              +      +D GR+IH   +K   E+D+ + N LI MY +CG +++   IF  +  ++
Sbjct: 310 ALNSCCGLEALDWGREIHTAAVKLGLETDVFVGNSLIVMYYRCGNLNDGVVIFKRISKKN 369

Query: 398 LVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFN 457
           +VSWNS+++G + HG     L  F  M+ S   P+ +TF G+LSACSH+G+  +G  LF 
Sbjct: 370 IVSWNSVIVGCAQHGCGMWALAFFNQMVRSMVEPDEITFTGLLSACSHSGMSQKGRCLFK 429

Query: 458 AMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGN 517
              +    +   +HY  M+++LGR+GK++EAEE +  +P + +  +W  LL AC      
Sbjct: 430 YFSENKSAEVKLDHYACMVDILGRSGKLEEAEELIRNMPVKANSMVWLVLLSACTM-HSK 488

Query: 518 AEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLM 577
            E+AE AAK +++L+P  + A+V+L N+YA++ R  +  ++R +M  +G+ K PG SW+ 
Sbjct: 489 LEVAERAAKCIIDLEPHCSSAYVLLSNLYASASRWSDVSRIRREMKQRGITKQPGRSWIT 548

Query: 578 RNGGIQMFLSGDK 590
             G    FLSGD+
Sbjct: 549 IKGWRNEFLSGDR 561



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 34/139 (24%), Positives = 73/139 (52%), Gaps = 10/139 (7%)

Query: 16  SSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNG----RLSEARRLFEEMPER 71
           S I  Y + G +++   +F+ + ++N+VS+N+++ G  Q+G     L+   ++   M E 
Sbjct: 344 SLIVMYYRCGNLNDGVVIFKRISKKNIVSWNSVIVGCAQHGCGMWALAFFNQMVRSMVEP 403

Query: 72  NVVSWTAMICGLADAGRVCEARKLFEEMPERNVVS-----WNSMVVGLIRNGELNEARKV 126
           + +++T ++   + +G   + R LF+   E          +  MV  L R+G+L EA ++
Sbjct: 404 DEITFTGLLSACSHSGMSQKGRCLFKYFSENKSAEVKLDHYACMVDILGRSGKLEEAEEL 463

Query: 127 FNSMPIK-NVISWNAMIAG 144
             +MP+K N + W  +++ 
Sbjct: 464 IRNMPVKANSMVWLVLLSA 482


>gi|308044597|ref|NP_001182884.1| uncharacterized protein LOC100501159 [Zea mays]
 gi|238007964|gb|ACR35017.1| unknown [Zea mays]
          Length = 580

 Score =  355 bits (910), Expect = 6e-95,   Method: Compositional matrix adjust.
 Identities = 205/577 (35%), Positives = 306/577 (53%), Gaps = 47/577 (8%)

Query: 27  IDEAKALF--QLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLA 84
           +  A+ALF       R +    AML G+ + GR+  AR LF+ MP +NVV+WT+M+ G  
Sbjct: 11  LTRAEALFGAAPAAARGLYLDTAMLDGYAKAGRVDRARELFDAMPVKNVVTWTSMVSGYF 70

Query: 85  DAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAG 144
            AGRV EAR+LF+ MPERN  SW ++V G  RNG L EAR++F+ MP +NV++W AM+  
Sbjct: 71  RAGRVQEARELFDVMPERNDYSWTTVVQGYARNGMLREAREMFDRMPQRNVVAWTAMVKA 130

Query: 145 YVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPR--KNVVSWTA 202
           YV+C  + +A  LF+ M ERN  +W +MISG+   G+V E   LF RMP   KNVVSWT 
Sbjct: 131 YVDCGQIQQAWELFDMMPERNSYSWNAMISGFLSIGKVAEAVQLFERMPHRHKNVVSWTT 190

Query: 203 MIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVP 262
           M+ G A NG                         +C               A+  FD +P
Sbjct: 191 MVAGLANNGL------------------------AC--------------RAREFFDRMP 212

Query: 263 VRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFME 322
            +D  +W ++I  Y + GQ++ A  LF +M  +D V W+ +I    +NE   EA  +F+ 
Sbjct: 213 AKDTAAWNAIITVYANNGQLNEAQRLFDSMLAKDLVTWSTIIEAYSKNERKHEALNMFLL 272

Query: 323 MRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGV 382
           MR   V P   T   +   + +T  +   +QIH +++     S+  L N L++MY++ G 
Sbjct: 273 MRHSAVSPNIRTLISILVISESTVEV---KQIHGLVIALGFLSETSLGNALLTMYSRSGD 329

Query: 383 IDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSA 442
           + +A+  F  +  +D ++W S+V  F+ HG     L  F  ML  G  P+S TF  +LSA
Sbjct: 330 LMSAWFAFKRLEQKDAITWTSIVQAFADHGCGYHALLGFAQMLRHGYKPSSTTFTAVLSA 389

Query: 443 CSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFE-PDH 501
           C H GLV +G ++F +++ VY ++P  EHY  +++LLGRAG ++EA+E V  +     D 
Sbjct: 390 CRHVGLVGKGRKMFKSIYHVYGLEPTIEHYSCLVDLLGRAGYVREAKELVDGMQQGMRDE 449

Query: 502 RIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMD 561
            I   LLGAC       E+A    + L+  DP     + +L N++A+ G   E   +   
Sbjct: 450 AILATLLGAC-VVHNEVEVAREVGEDLVRFDPSGTGGYRLLANVFASHGMWDETANVWKV 508

Query: 562 MGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
           M     ++ PG S +  N    +F S D+   Q AEI
Sbjct: 509 MRGSKAKRTPGFSQIEVNMRNHVFYSRDQEHPQCAEI 545



 Score =  214 bits (544), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 128/418 (30%), Positives = 213/418 (50%), Gaps = 46/418 (11%)

Query: 15  TSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVV 74
           T+ +  Y+K G +D A+ LF  MP +NVV++ +M+SG+ + GR+ EAR LF+ MPERN  
Sbjct: 32  TAMLDGYAKAGRVDRARELFDAMPVKNVVTWTSMVSGYFRAGRVQEARELFDVMPERNDY 91

Query: 75  SWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKN 134
           SWT ++ G A  G + EAR++F+ MP+RNVV+W +MV   +  G++ +A ++F+ MP +N
Sbjct: 92  SWTTVVQGYARNGMLREAREMFDRMPQRNVVAWTAMVKAYVDCGQIQQAWELFDMMPERN 151

Query: 135 VISWNAMIAGYVECCMMGEAIVLFEEMEER--NVVTWTSMISGYCRAGEVEEGYCLFRRM 192
             SWNAMI+G++    + EA+ LFE M  R  NVV+WT+M++G    G        F RM
Sbjct: 152 SYSWNAMISGFLSIGKVAEAVQLFERMPHRHKNVVSWTTMVAGLANNGLACRAREFFDRM 211

Query: 193 PRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLE 252
           P K+  +W A+I  +A NG   E+  LF  M          ++ + +++I  Y +  R  
Sbjct: 212 PAKDTAAWNAIITVYANNGQLNEAQRLFDSMLA-------KDLVTWSTIIEAYSKNERKH 264

Query: 253 EAQNLF-----------------------DTVPVRD---------EISWTSMIDGYLSV- 279
           EA N+F                        TV V+           +S TS+ +  L++ 
Sbjct: 265 EALNMFLLMRHSAVSPNIRTLISILVISESTVEVKQIHGLVIALGFLSETSLGNALLTMY 324

Query: 280 ---GQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFS 336
              G + +A++ F  +  +DA+ WT+++     +     A   F +M  HG  P + TF+
Sbjct: 325 SRSGDLMSAWFAFKRLEQKDAITWTSIVQAFADHGCGYHALLGFAQMLRHGYKPSSTTFT 384

Query: 337 VLFGAAGATANIDLGRQIHCVLMKTES-ESDLILENCLISMYAKCGVIDNAYNIFSNM 393
            +  A      +  GR++   +      E  +   +CL+ +  + G +  A  +   M
Sbjct: 385 AVLSACRHVGLVGKGRKMFKSIYHVYGLEPTIEHYSCLVDLLGRAGYVREAKELVDGM 442



 Score = 72.4 bits (176), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 62/273 (22%), Positives = 129/273 (47%), Gaps = 15/273 (5%)

Query: 6   HPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLF 65
           H    VV  T+ +   +  G    A+  F  MP ++  ++NA+++ +  NG+L+EA+RLF
Sbjct: 180 HRHKNVVSWTTMVAGLANNGLACRAREFFDRMPAKDTAAWNAIITVYANNGQLNEAQRLF 239

Query: 66  EEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWN--SMVVGLIRNGELNEA 123
           + M  +++V+W+ +I   +   R  EA  +F  M   + VS N  +++  L+ +    E 
Sbjct: 240 DSMLAKDLVTWSTIIEAYSKNERKHEALNMFLLM-RHSAVSPNIRTLISILVISESTVEV 298

Query: 124 RKVFNSMPIKNVIS----WNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRA 179
           +++   +     +S     NA++  Y     +  A   F+ +E+++ +TWTS++  +   
Sbjct: 299 KQIHGLVIALGFLSETSLGNALLTMYSRSGDLMSAWFAFKRLEQKDAITWTSIVQAFADH 358

Query: 180 GEVEEGYCLFRRMPRK----NVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNV 235
           G        F +M R     +  ++TA++      G   +   +F  +  +   G    +
Sbjct: 359 GCGYHALLGFAQMLRHGYKPSSTTFTAVLSACRHVGLVGKGRKMFKSIYHVY--GLEPTI 416

Query: 236 QSCNSMINGYIRFGRLEEAQNLFDTVP--VRDE 266
           +  + +++   R G + EA+ L D +   +RDE
Sbjct: 417 EHYSCLVDLLGRAGYVREAKELVDGMQQGMRDE 449


>gi|224108621|ref|XP_002314911.1| predicted protein [Populus trichocarpa]
 gi|222863951|gb|EEF01082.1| predicted protein [Populus trichocarpa]
          Length = 743

 Score =  354 bits (909), Expect = 6e-95,   Method: Compositional matrix adjust.
 Identities = 201/587 (34%), Positives = 328/587 (55%), Gaps = 19/587 (3%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWT 77
           I  YSK G I  A+ +F  MPQ N  S+N MLS + ++G LS  + +F  MP R+ VSW 
Sbjct: 47  INAYSKLGNITYARHVFDKMPQPNSFSWNTMLSAYSKSGDLSTMQEIFSIMPNRDGVSWN 106

Query: 78  AMICGLADAGRVCEARKLFEEMPERNV-----VSWNSMVVGLIRNGELNEARKVFNSMPI 132
           ++I G    G V EA K +  M +  V     +++++M++ +   G ++  R++   +  
Sbjct: 107 SLISGYVCYGSVVEAVKTYNSMMKDGVLNLNRITFSTMLLLVSSQGCVDLGRQIHGQIVK 166

Query: 133 ----KNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCL 188
                 V   ++++  Y +  ++  A  +F+E++ERNVV + +MI+G  R+G V++   L
Sbjct: 167 FGFGAYVFVGSSLVDMYAKMGLVSVASQVFDEVQERNVVMYNTMITGLLRSGMVKDSKRL 226

Query: 189 FRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRF 248
           F  M  ++ +SWT MI G   NG   E++ LF +M+     G   +  +  S++      
Sbjct: 227 FHGMKERDSISWTTMITGLIQNGLEAEAMDLFRDMR---QEGMAMDQYTFGSVLTACGGL 283

Query: 249 GRLEEAQNLFDTVPVRDEISW-----TSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAM 303
             L+E + +  T+ +R   +      ++++D Y     V  A  +F  M +++ V+WTAM
Sbjct: 284 RALKEGKEI-HTLIIRSGYNHNVFVGSALVDMYCKCRSVRYAEAVFKRMANKNVVSWTAM 342

Query: 304 ISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTES 363
           + G  QN    EA  +F +M+ +G+ P + T   +  +    A+++ G Q HC  + +  
Sbjct: 343 LVGYGQNGFSEEAVRVFCDMQRNGIEPDDFTLGSVISSCANLASLEEGAQFHCQALVSGL 402

Query: 364 ESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFES 423
            S + + N LI++Y KCG I+++  +F  M  RD VSW ++V G++  G ANET+ +FE 
Sbjct: 403 ISFITVSNALITLYGKCGSIEDSNQLFDEMSFRDEVSWTALVSGYAQFGKANETIDLFER 462

Query: 424 MLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAG 483
           ML  G  P++VTF+ +LSACS AGLV RG + F +M   + I P  +HY  MI+L GRAG
Sbjct: 463 MLVQGLKPDAVTFIAVLSACSRAGLVERGQQYFESMLKDHGIIPFSDHYTCMIDLFGRAG 522

Query: 484 KIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLC 543
           +++EA+ F+ ++PF PD   W  LL +C    GN EI + AA+ LLELDP N   +++L 
Sbjct: 523 RLEEAKNFINKMPFSPDSIGWATLLSSCRL-YGNEEIGKWAAESLLELDPQNPAGYILLS 581

Query: 544 NIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDK 590
           +IYAA G+     +LR  M  KG RK PG SW+     + +F + D+
Sbjct: 582 SIYAAKGKWSNVAQLRRGMREKGARKEPGFSWIKYKSKVYIFSADDQ 628



 Score =  188 bits (477), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 113/433 (26%), Positives = 213/433 (49%), Gaps = 44/433 (10%)

Query: 126 VFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEG 185
           +  S+       +N +I  Y +   +  A  +F++M + N  +W +M+S Y ++G++   
Sbjct: 31  IIKSLTNPETFLYNNLINAYSKLGNITYARHVFDKMPQPNSFSWNTMLSAYSKSGDLSTM 90

Query: 186 YCLFRRMPRKNVVSWTAMIGGF-----------AWNGFHKE-----------SLLLFIEM 223
             +F  MP ++ VSW ++I G+            +N   K+           ++LL +  
Sbjct: 91  QEIFSIMPNRDGVSWNSLISGYVCYGSVVEAVKTYNSMMKDGVLNLNRITFSTMLLLVSS 150

Query: 224 KGICDNGNNCNVQSC-----------NSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSM 272
           +G  D G   + Q             +S+++ Y + G +  A  +FD V  R+ + + +M
Sbjct: 151 QGCVDLGRQIHGQIVKFGFGAYVFVGSSLVDMYAKMGLVSVASQVFDEVQERNVVMYNTM 210

Query: 273 IDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLN 332
           I G L  G V ++  LFH M +RD+++WT MI+GL+QN L  EA  LF +MR  G+    
Sbjct: 211 ITGLLRSGMVKDSKRLFHGMKERDSISWTTMITGLIQNGLEAEAMDLFRDMRQEGMAMDQ 270

Query: 333 ATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSN 392
            TF  +  A G    +  G++IH +++++    ++ + + L+ MY KC  +  A  +F  
Sbjct: 271 YTFGSVLTACGGLRALKEGKEIHTLIIRSGYNHNVFVGSALVDMYCKCRSVRYAEAVFKR 330

Query: 393 MVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRG 452
           M ++++VSW +M++G+  +G + E ++VF  M  +G  P+  T   ++S+C++   +  G
Sbjct: 331 MANKNVVSWTAMLVGYGQNGFSEEAVRVFCDMQRNGIEPDDFTLGSVISSCANLASLEEG 390

Query: 453 WELFNAMFDVYKIQPGPEHYVS----MINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALL 508
                A F    +  G   +++    +I L G+ G I+++ +    + F  D   W AL+
Sbjct: 391 -----AQFHCQALVSGLISFITVSNALITLYGKCGSIEDSNQLFDEMSFR-DEVSWTALV 444

Query: 509 -GACGFCEGNAEI 520
            G   F + N  I
Sbjct: 445 SGYAQFGKANETI 457



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 104/357 (29%), Positives = 179/357 (50%), Gaps = 39/357 (10%)

Query: 15  TSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVV 74
           +S +  Y+K G +  A  +F  + +RNVV YN M++G L++G + +++RLF  M ER+ +
Sbjct: 177 SSLVDMYAKMGLVSVASQVFDEVQERNVVMYNTMITGLLRSGMVKDSKRLFHGMKERDSI 236

Query: 75  SWTAMICGLADAGRVCEARKLFEEMPERNVV----SWNSMVVGLIRNGELNEARKVFNSM 130
           SWT MI GL   G   EA  LF +M +  +     ++ S++        L E +++ +++
Sbjct: 237 SWTTMITGLIQNGLEAEAMDLFRDMRQEGMAMDQYTFGSVLTACGGLRALKEGKEI-HTL 295

Query: 131 PIK-----NVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEG 185
            I+     NV   +A++  Y +C  +  A  +F+ M  +NVV+WT+M+ GY + G  EE 
Sbjct: 296 IIRSGYNHNVFVGSALVDMYCKCRSVRYAEAVFKRMANKNVVSWTAMLVGYGQNGFSEEA 355

Query: 186 YCLFRRMPRK----------NVVSWTAMIGGFAWNG-FHKESLLLFIEMKGICDNGNNCN 234
             +F  M R           +V+S  A +        FH ++L+          +G    
Sbjct: 356 VRVFCDMQRNGIEPDDFTLGSVISSCANLASLEEGAQFHCQALV----------SGLISF 405

Query: 235 VQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPD 294
           +   N++I  Y + G +E++  LFD +  RDE+SWT+++ GY   G+ +    LF  M  
Sbjct: 406 ITVSNALITLYGKCGSIEDSNQLFDEMSFRDEVSWTALVSGYAQFGKANETIDLFERMLV 465

Query: 295 R----DAVAWTAMISGLVQNELFVEATYLFMEM-RAHGVPPLNATFSV---LFGAAG 343
           +    DAV + A++S   +  L       F  M + HG+ P +  ++    LFG AG
Sbjct: 466 QGLKPDAVTFIAVLSACSRAGLVERGQQYFESMLKDHGIIPFSDHYTCMIDLFGRAG 522



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 50/213 (23%), Positives = 99/213 (46%), Gaps = 20/213 (9%)

Query: 11  VVHLTSSITKYSKRGFIDEAKALFQLMPQRNVV-----SYNAMLSGFLQNGRLSEARRLF 65
           VV  T+ +  Y + GF +EA  +F  M QRN +     +  +++S       L E  +  
Sbjct: 336 VVSWTAMLVGYGQNGFSEEAVRVFCDM-QRNGIEPDDFTLGSVISSCANLASLEEGAQFH 394

Query: 66  EEMPERNVVSW----TAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELN 121
            +     ++S+     A+I      G + ++ +LF+EM  R+ VSW ++V G  + G+ N
Sbjct: 395 CQALVSGLISFITVSNALITLYGKCGSIEDSNQLFDEMSFRDEVSWTALVSGYAQFGKAN 454

Query: 122 EARKVFNSMPIK----NVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVT-----WTSM 172
           E   +F  M ++    + +++ A+++      ++      FE M + + +      +T M
Sbjct: 455 ETIDLFERMLVQGLKPDAVTFIAVLSACSRAGLVERGQQYFESMLKDHGIIPFSDHYTCM 514

Query: 173 ISGYCRAGEVEEGYCLFRRMP-RKNVVSWTAMI 204
           I  + RAG +EE      +MP   + + W  ++
Sbjct: 515 IDLFGRAGRLEEAKNFINKMPFSPDSIGWATLL 547



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 30/115 (26%), Positives = 59/115 (51%), Gaps = 4/115 (3%)

Query: 345 TANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSM 404
           T N    +++HC+++K+ +  +  L N LI+ Y+K G I  A ++F  M   +  SWN+M
Sbjct: 18  TRNQTQAKKLHCLIIKSLTNPETFLYNNLINAYSKLGNITYARHVFDKMPQPNSFSWNTM 77

Query: 405 VMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAM 459
           +  +S  G  +   ++F  M     + + V++  ++S     G V    + +N+M
Sbjct: 78  LSAYSKSGDLSTMQEIFSIM----PNRDGVSWNSLISGYVCYGSVVEAVKTYNSM 128


>gi|414873978|tpg|DAA52535.1| TPA: hypothetical protein ZEAMMB73_896450 [Zea mays]
 gi|414873979|tpg|DAA52536.1| TPA: hypothetical protein ZEAMMB73_896450 [Zea mays]
          Length = 701

 Score =  354 bits (909), Expect = 7e-95,   Method: Compositional matrix adjust.
 Identities = 205/577 (35%), Positives = 306/577 (53%), Gaps = 47/577 (8%)

Query: 27  IDEAKALF--QLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLA 84
           +  A+ALF       R +    AML G+ + GR+  AR LF+ MP +NVV+WT+M+ G  
Sbjct: 132 LTRAEALFGAAPAAARGLYLDTAMLDGYAKAGRVDRARELFDAMPVKNVVTWTSMVSGYF 191

Query: 85  DAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAG 144
            AGRV EAR+LF+ MPERN  SW ++V G  RNG L EAR++F+ MP +NV++W AM+  
Sbjct: 192 RAGRVQEARELFDVMPERNDYSWTTVVQGYARNGMLREAREMFDRMPQRNVVAWTAMVKA 251

Query: 145 YVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPR--KNVVSWTA 202
           YV+C  + +A  LF+ M ERN  +W +MISG+   G+V E   LF RMP   KNVVSWT 
Sbjct: 252 YVDCGQIQQAWELFDMMPERNSYSWNAMISGFLSIGKVAEAVQLFERMPHRHKNVVSWTT 311

Query: 203 MIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVP 262
           M+ G A NG                         +C               A+  FD +P
Sbjct: 312 MVAGLANNGL------------------------AC--------------RAREFFDRMP 333

Query: 263 VRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFME 322
            +D  +W ++I  Y + GQ++ A  LF +M  +D V W+ +I    +NE   EA  +F+ 
Sbjct: 334 AKDTAAWNAIITVYANNGQLNEAQRLFDSMLAKDLVTWSTIIEAYSKNERKHEALNMFLL 393

Query: 323 MRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGV 382
           MR   V P   T   +   + +T  +   +QIH +++     S+  L N L++MY++ G 
Sbjct: 394 MRHSAVSPNIRTLISILVISESTVEV---KQIHGLVIALGFLSETSLGNALLTMYSRSGD 450

Query: 383 IDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSA 442
           + +A+  F  +  +D ++W S+V  F+ HG     L  F  ML  G  P+S TF  +LSA
Sbjct: 451 LMSAWFAFKRLEQKDAITWTSIVQAFADHGCGYHALLGFAQMLRHGYKPSSTTFTAVLSA 510

Query: 443 CSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFE-PDH 501
           C H GLV +G ++F +++ VY ++P  EHY  +++LLGRAG ++EA+E V  +     D 
Sbjct: 511 CRHVGLVGKGRKMFKSIYHVYGLEPTIEHYSCLVDLLGRAGYVREAKELVDGMQQGMRDE 570

Query: 502 RIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMD 561
            I   LLGAC       E+A    + L+  DP     + +L N++A+ G   E   +   
Sbjct: 571 AILATLLGAC-VVHNEVEVAREVGEDLVRFDPSGTGGYRLLANVFASHGMWDETANVWKV 629

Query: 562 MGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
           M     ++ PG S +  N    +F S D+   Q AEI
Sbjct: 630 MRGSKAKRTPGFSQIEVNMRNHVFYSRDQEHPQCAEI 666



 Score =  214 bits (546), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 128/418 (30%), Positives = 213/418 (50%), Gaps = 46/418 (11%)

Query: 15  TSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVV 74
           T+ +  Y+K G +D A+ LF  MP +NVV++ +M+SG+ + GR+ EAR LF+ MPERN  
Sbjct: 153 TAMLDGYAKAGRVDRARELFDAMPVKNVVTWTSMVSGYFRAGRVQEARELFDVMPERNDY 212

Query: 75  SWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKN 134
           SWT ++ G A  G + EAR++F+ MP+RNVV+W +MV   +  G++ +A ++F+ MP +N
Sbjct: 213 SWTTVVQGYARNGMLREAREMFDRMPQRNVVAWTAMVKAYVDCGQIQQAWELFDMMPERN 272

Query: 135 VISWNAMIAGYVECCMMGEAIVLFEEMEER--NVVTWTSMISGYCRAGEVEEGYCLFRRM 192
             SWNAMI+G++    + EA+ LFE M  R  NVV+WT+M++G    G        F RM
Sbjct: 273 SYSWNAMISGFLSIGKVAEAVQLFERMPHRHKNVVSWTTMVAGLANNGLACRAREFFDRM 332

Query: 193 PRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLE 252
           P K+  +W A+I  +A NG   E+  LF  M          ++ + +++I  Y +  R  
Sbjct: 333 PAKDTAAWNAIITVYANNGQLNEAQRLFDSMLAK-------DLVTWSTIIEAYSKNERKH 385

Query: 253 EAQNLF-----------------------DTVPVRDE---------ISWTSMIDGYLSV- 279
           EA N+F                        TV V+           +S TS+ +  L++ 
Sbjct: 386 EALNMFLLMRHSAVSPNIRTLISILVISESTVEVKQIHGLVIALGFLSETSLGNALLTMY 445

Query: 280 ---GQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFS 336
              G + +A++ F  +  +DA+ WT+++     +     A   F +M  HG  P + TF+
Sbjct: 446 SRSGDLMSAWFAFKRLEQKDAITWTSIVQAFADHGCGYHALLGFAQMLRHGYKPSSTTFT 505

Query: 337 VLFGAAGATANIDLGRQIHCVLMKTES-ESDLILENCLISMYAKCGVIDNAYNIFSNM 393
            +  A      +  GR++   +      E  +   +CL+ +  + G +  A  +   M
Sbjct: 506 AVLSACRHVGLVGKGRKMFKSIYHVYGLEPTIEHYSCLVDLLGRAGYVREAKELVDGM 563



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 62/273 (22%), Positives = 129/273 (47%), Gaps = 15/273 (5%)

Query: 6   HPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLF 65
           H    VV  T+ +   +  G    A+  F  MP ++  ++NA+++ +  NG+L+EA+RLF
Sbjct: 301 HRHKNVVSWTTMVAGLANNGLACRAREFFDRMPAKDTAAWNAIITVYANNGQLNEAQRLF 360

Query: 66  EEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWN--SMVVGLIRNGELNEA 123
           + M  +++V+W+ +I   +   R  EA  +F  M   + VS N  +++  L+ +    E 
Sbjct: 361 DSMLAKDLVTWSTIIEAYSKNERKHEALNMFLLM-RHSAVSPNIRTLISILVISESTVEV 419

Query: 124 RKVFNSMPIKNVIS----WNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRA 179
           +++   +     +S     NA++  Y     +  A   F+ +E+++ +TWTS++  +   
Sbjct: 420 KQIHGLVIALGFLSETSLGNALLTMYSRSGDLMSAWFAFKRLEQKDAITWTSIVQAFADH 479

Query: 180 GEVEEGYCLFRRMPR----KNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNV 235
           G        F +M R     +  ++TA++      G   +   +F  +  +   G    +
Sbjct: 480 GCGYHALLGFAQMLRHGYKPSSTTFTAVLSACRHVGLVGKGRKMFKSIYHVY--GLEPTI 537

Query: 236 QSCNSMINGYIRFGRLEEAQNLFDTVP--VRDE 266
           +  + +++   R G + EA+ L D +   +RDE
Sbjct: 538 EHYSCLVDLLGRAGYVREAKELVDGMQQGMRDE 570


>gi|356569774|ref|XP_003553071.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Glycine max]
          Length = 775

 Score =  354 bits (908), Expect = 8e-95,   Method: Compositional matrix adjust.
 Identities = 195/516 (37%), Positives = 292/516 (56%), Gaps = 36/516 (6%)

Query: 118 GELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYC 177
           G +  AR+VF   P+ +++SWN ++AGYV+   + EA  +FE M ERN +   SMI+ + 
Sbjct: 154 GSVGSARRVFEESPVLDLVSWNTLLAGYVQAGEVEEAERVFEGMPERNTIASNSMIALFG 213

Query: 178 RAGEVEEGYCLFR--RMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKG---------- 225
           R G VE+   +F   R   +++VSW+AM+  +  N   +E+L+LF+EMKG          
Sbjct: 214 RKGCVEKARRIFNGVRGRERDMVSWSAMVSCYEQNEMGEEALVLFVEMKGSGVAVDEVVV 273

Query: 226 -----ICDNGNNCN-----------------VQSCNSMINGYIRFGRLEEAQNLFDTV-P 262
                 C    N                   V   N++I+ Y   G + +A+ +FD    
Sbjct: 274 VSALSACSRVLNVEMGRWVHGLAVKVGVEDYVSLKNALIHLYSSCGEIVDARRIFDDGGE 333

Query: 263 VRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFME 322
           + D ISW SMI GYL  G + +A  LF++MP++D V+W+AMISG  Q+E F EA  LF E
Sbjct: 334 LLDLISWNSMISGYLRCGSIQDAEMLFYSMPEKDVVSWSAMISGYAQHECFSEALALFQE 393

Query: 323 MRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGV 382
           M+ HGV P          A    A +DLG+ IH  + + + + ++IL   LI MY KCG 
Sbjct: 394 MQLHGVRPDETALVSAISACTHLATLDLGKWIHAYISRNKLQVNVILSTTLIDMYMKCGC 453

Query: 383 IDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSA 442
           ++NA  +F  M  + + +WN++++G + +G   ++L +F  M ++GT PN +TF+G+L A
Sbjct: 454 VENALEVFYAMEEKGVSTWNAVILGLAMNGSVEQSLNMFADMKKTGTVPNEITFMGVLGA 513

Query: 443 CSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHR 502
           C H GLV+ G   FN+M   +KI+   +HY  M++LLGRAG +KEAEE +  +P  PD  
Sbjct: 514 CRHMGLVNDGRHYFNSMIHEHKIEANIKHYGCMVDLLGRAGLLKEAEELIDSMPMAPDVA 573

Query: 503 IWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDM 562
            WGALLGAC     N E+ E   ++L++L P +   HV+L NIYA+ G      ++R  M
Sbjct: 574 TWGALLGACRKHRDN-EMGERLGRKLIQLQPDHDGFHVLLSNIYASKGNWGNVLEIRGIM 632

Query: 563 GLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
              GV K PGCS +  NG +  FL+GDK   Q+ +I
Sbjct: 633 AQHGVVKTPGCSMIEANGTVHEFLAGDKTHPQINDI 668



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 109/439 (24%), Positives = 204/439 (46%), Gaps = 76/439 (17%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEM--PERNVVS 75
           +  Y + G ++EA+ +F+ MP+RN ++ N+M++ F + G + +ARR+F  +   ER++VS
Sbjct: 178 LAGYVQAGEVEEAERVFEGMPERNTIASNSMIALFGRKGCVEKARRIFNGVRGRERDMVS 237

Query: 76  WTAMICGLADAGRVCEARKLFEEMPE---------------------------------- 101
           W+AM+          EA  LF EM                                    
Sbjct: 238 WSAMVSCYEQNEMGEEALVLFVEMKGSGVAVDEVVVVSALSACSRVLNVEMGRWVHGLAV 297

Query: 102 ----RNVVSWNSMVVGLIRN-GELNEARKVFNS-MPIKNVISWNAMIAGYVECCMMGEAI 155
                + VS  + ++ L  + GE+ +AR++F+    + ++ISWN+MI+GY+ C  + +A 
Sbjct: 298 KVGVEDYVSLKNALIHLYSSCGEIVDARRIFDDGGELLDLISWNSMISGYLRCGSIQDAE 357

Query: 156 VLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNV-VSWTAMIGGFAWNGFHK 214
           +LF  M E++VV+W++MISGY +     E   LF+ M    V    TA++   +    H 
Sbjct: 358 MLFYSMPEKDVVSWSAMISGYAQHECFSEALALFQEMQLHGVRPDETALVSAIS-ACTHL 416

Query: 215 ESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMID 274
            +L L                      I+ YI   +L+            + I  T++ID
Sbjct: 417 ATLDL-------------------GKWIHAYISRNKLQ-----------VNVILSTTLID 446

Query: 275 GYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNAT 334
            Y+  G V NA  +F+ M ++    W A+I GL  N    ++  +F +M+  G  P   T
Sbjct: 447 MYMKCGCVENALEVFYAMEEKGVSTWNAVILGLAMNGSVEQSLNMFADMKKTGTVPNEIT 506

Query: 335 FSVLFGAAGATANIDLGRQ-IHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNM 393
           F  + GA      ++ GR   + ++ + + E+++    C++ +  + G++  A  +  +M
Sbjct: 507 FMGVLGACRHMGLVNDGRHYFNSMIHEHKIEANIKHYGCMVDLLGRAGLLKEAEELIDSM 566

Query: 394 -VSRDLVSWNSMVMGFSHH 411
            ++ D+ +W +++     H
Sbjct: 567 PMAPDVATWGALLGACRKH 585



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 84/327 (25%), Positives = 144/327 (44%), Gaps = 66/327 (20%)

Query: 229 NGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYL 288
           +G + +V   N+++N Y   G +  A+ +F+  PV D +SW +++ GY+  G+V  A  +
Sbjct: 134 SGFDGDVYVRNTLMNLYAVCGSVGSARRVFEESPVLDLVSWNTLLAGYVQAGEVEEAERV 193

Query: 289 FHNMP---------------------------------DRDAVAWTAMISGLVQNELFVE 315
           F  MP                                 +RD V+W+AM+S   QNE+  E
Sbjct: 194 FEGMPERNTIASNSMIALFGRKGCVEKARRIFNGVRGRERDMVSWSAMVSCYEQNEMGEE 253

Query: 316 ATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESES---------- 365
           A  LF+EM+  GV            A     N+++GR +H + +K   E           
Sbjct: 254 ALVLFVEMKGSGVAVDEVVVVSALSACSRVLNVEMGRWVHGLAVKVGVEDYVSLKNALIH 313

Query: 366 ----------------------DLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNS 403
                                 DLI  N +IS Y +CG I +A  +F +M  +D+VSW++
Sbjct: 314 LYSSCGEIVDARRIFDDGGELLDLISWNSMISGYLRCGSIQDAEMLFYSMPEKDVVSWSA 373

Query: 404 MVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVY 463
           M+ G++ H   +E L +F+ M   G  P+    +  +SAC+H   +  G +  +A     
Sbjct: 374 MISGYAQHECFSEALALFQEMQLHGVRPDETALVSAISACTHLATLDLG-KWIHAYISRN 432

Query: 464 KIQPGPEHYVSMINLLGRAGKIKEAEE 490
           K+Q       ++I++  + G ++ A E
Sbjct: 433 KLQVNVILSTTLIDMYMKCGCVENALE 459



 Score = 75.1 bits (183), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 64/240 (26%), Positives = 105/240 (43%), Gaps = 49/240 (20%)

Query: 16  SSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEM------P 69
           S I+ Y + G I +A+ LF  MP+++VVS++AM+SG+ Q+   SEA  LF+EM      P
Sbjct: 342 SMISGYLRCGSIQDAEMLFYSMPEKDVVSWSAMISGYAQHECFSEALALFQEMQLHGVRP 401

Query: 70  ER---------------------------------NVVSWTAMICGLADAGRVCEARKLF 96
           +                                  NV+  T +I      G V  A ++F
Sbjct: 402 DETALVSAISACTHLATLDLGKWIHAYISRNKLQVNVILSTTLIDMYMKCGCVENALEVF 461

Query: 97  EEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCM-MGEA- 154
             M E+ V +WN++++GL  NG + ++  +F  M     +       G +  C  MG   
Sbjct: 462 YAMEEKGVSTWNAVILGLAMNGSVEQSLNMFADMKKTGTVPNEITFMGVLGACRHMGLVN 521

Query: 155 -------IVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMP-RKNVVSWTAMIGG 206
                   ++ E   E N+  +  M+    RAG ++E   L   MP   +V +W A++G 
Sbjct: 522 DGRHYFNSMIHEHKIEANIKHYGCMVDLLGRAGLLKEAEELIDSMPMAPDVATWGALLGA 581



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 41/174 (23%), Positives = 83/174 (47%), Gaps = 7/174 (4%)

Query: 288 LFHNMPDRDAVAWTAMISG--LVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGAT 345
           +F+++ + +   W  ++     +QN       +  + + +H  P  + T+ +L     A 
Sbjct: 60  IFNHLRNPNTFTWNTIMRAHLYLQNSPHQALLHYKLFLASHAKPD-SYTYPILLQCCAAR 118

Query: 346 ANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMV 405
            +   GRQ+H   + +  + D+ + N L+++YA CG + +A  +F      DLVSWN+++
Sbjct: 119 VSEFEGRQLHAHAVSSGFDGDVYVRNTLMNLYAVCGSVGSARRVFEESPVLDLVSWNTLL 178

Query: 406 MGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAM 459
            G+   G   E  +VFE M E     N++    +++     G V +   +FN +
Sbjct: 179 AGYVQAGEVEEAERVFEGMPER----NTIASNSMIALFGRKGCVEKARRIFNGV 228



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/151 (27%), Positives = 75/151 (49%), Gaps = 10/151 (6%)

Query: 4   RNHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARR 63
           RN  +  V+  T+ I  Y K G ++ A  +F  M ++ V ++NA++ G   NG + ++  
Sbjct: 431 RNKLQVNVILSTTLIDMYMKCGCVENALEVFYAMEEKGVSTWNAVILGLAMNGSVEQSLN 490

Query: 64  LFEEMPER----NVVSWTAMICGLADAGRVCEARKLFEEM-----PERNVVSWNSMVVGL 114
           +F +M +     N +++  ++      G V + R  F  M      E N+  +  MV  L
Sbjct: 491 MFADMKKTGTVPNEITFMGVLGACRHMGLVNDGRHYFNSMIHEHKIEANIKHYGCMVDLL 550

Query: 115 IRNGELNEARKVFNSMPIK-NVISWNAMIAG 144
            R G L EA ++ +SMP+  +V +W A++  
Sbjct: 551 GRAGLLKEAEELIDSMPMAPDVATWGALLGA 581


>gi|297821407|ref|XP_002878586.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297324425|gb|EFH54845.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 786

 Score =  354 bits (908), Expect = 8e-95,   Method: Compositional matrix adjust.
 Identities = 215/624 (34%), Positives = 334/624 (53%), Gaps = 45/624 (7%)

Query: 21  YSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMI 80
           YSK G+   A+ LF  MP R   S+N +LS + + G +  +   F+ +P+R+ VSWT MI
Sbjct: 59  YSKTGYALHARKLFDEMPLRTAFSWNTVLSAYAKRGDMDSSCEFFDRLPQRDSVSWTTMI 118

Query: 81  CGLADAGRVCEARKLFEEM------PER-------------------------------- 102
            G  + G+  +A ++  EM      P +                                
Sbjct: 119 VGYKNIGQYHKAIRIMGEMMREGIEPSQFTLTNVLASVAATRCLETGKKVHSFIVKLGLR 178

Query: 103 -NVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEM 161
            NV   NS++    + G+   A+ VF+ M +K++ SWNAMIA +++   M  A+  FE+M
Sbjct: 179 GNVSVSNSLLNMYAKCGDPMMAKVVFDRMVVKDISSWNAMIALHMQVGQMDLAMAQFEQM 238

Query: 162 EERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFI 221
            ER++VTW SMISGY + G       +F +M R +++S          +       L   
Sbjct: 239 AERDIVTWNSMISGYNQRGYDLRALDMFSKMLRDSMLSPDRFTLASVLSACANLEKLCIG 298

Query: 222 EM--KGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRD-EIS-WTSMIDGYL 277
           E     I   G + +    N++I+ Y R G +E A+ L +    +D +I  +T+++DGY+
Sbjct: 299 EQIHSHIVTTGFDISGIVLNALISMYSRCGGVETARRLIEQRGTKDLKIEGFTALLDGYI 358

Query: 278 SVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSV 337
            +G ++ A  +F ++ DRD VAWTAMI G  Q+ L+ EA  LF  M      P + T + 
Sbjct: 359 KLGDMNEAKNIFDSLKDRDVVAWTAMIVGYEQHGLYGEAINLFRSMVGEEQRPNSYTLAA 418

Query: 338 LFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNM-VSR 396
           +   A + A++  G+QIH   +K+     + + N LI+MYAK G I +A   F  +   R
Sbjct: 419 MLSVASSLASLGHGKQIHGSAVKSGEIYSVSVSNALITMYAKAGSITSASRAFDLIRCER 478

Query: 397 DLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELF 456
           D VSW SM++  + HG A E L++FE+ML  G  P+ +T++G+ SAC+HAGLV++G + F
Sbjct: 479 DTVSWTSMIIALAQHGHAEEALELFETMLMEGLRPDHITYVGVFSACTHAGLVNQGRQYF 538

Query: 457 NAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEG 516
           + M DV KI P   HY  M++L GRAG ++EA+EF+ ++P EPD   WG+LL AC   + 
Sbjct: 539 DMMKDVDKIIPTLSHYACMVDLFGRAGLLQEAQEFIEKMPIEPDVVTWGSLLSACRVYK- 597

Query: 517 NAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWL 576
           N ++ + AA+RLL L+P N+ A+  L N+Y+A G+  E  K+R  M    V+K  G SW+
Sbjct: 598 NIDLGKVAAERLLLLEPENSGAYSALANLYSACGKWEEAAKIRKSMKDGRVKKEQGFSWI 657

Query: 577 MRNGGIQMFLSGDKIPAQVAEILL 600
                +  F   D I  Q  EI +
Sbjct: 658 EVKHKVHAFGVEDGIHPQKNEIYI 681



 Score =  162 bits (409), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 128/494 (25%), Positives = 217/494 (43%), Gaps = 78/494 (15%)

Query: 125 KVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEE 184
           +V  S  + +V   N ++  Y +      A  LF+EM  R   +W +++S Y + G+++ 
Sbjct: 39  RVIKSGLVFSVYLMNNLMNVYSKTGYALHARKLFDEMPLRTAFSWNTVLSAYAKRGDMDS 98

Query: 185 GYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEM--------------------- 223
               F R+P+++ VSWT MI G+   G + +++ +  EM                     
Sbjct: 99  SCEFFDRLPQRDSVSWTTMIVGYKNIGQYHKAIRIMGEMMREGIEPSQFTLTNVLASVAA 158

Query: 224 -----------KGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSM 272
                        I   G   NV   NS++N Y + G    A+ +FD + V+D  SW +M
Sbjct: 159 TRCLETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMAKVVFDRMVVKDISSWNAM 218

Query: 273 IDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEM-RAHGVPPL 331
           I  ++ VGQ+  A   F  M +RD V W +MISG  Q    + A  +F +M R   + P 
Sbjct: 219 IALHMQVGQMDLAMAQFEQMAERDIVTWNSMISGYNQRGYDLRALDMFSKMLRDSMLSPD 278

Query: 332 NATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDN------ 385
             T + +  A      + +G QIH  ++ T  +   I+ N LISMY++CG ++       
Sbjct: 279 RFTLASVLSACANLEKLCIGEQIHSHIVTTGFDISGIVLNALISMYSRCGGVETARRLIE 338

Query: 386 ---------------------------AYNIFSNMVSRDLVSWNSMVMGFSHHGLANETL 418
                                      A NIF ++  RD+V+W +M++G+  HGL  E +
Sbjct: 339 QRGTKDLKIEGFTALLDGYIKLGDMNEAKNIFDSLKDRDVVAWTAMIVGYEQHGLYGEAI 398

Query: 419 KVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVS---- 474
            +F SM+     PNS T   +LS  S    +  G ++  +      ++ G  + VS    
Sbjct: 399 NLFRSMVGEEQRPNSYTLAAMLSVASSLASLGHGKQIHGS-----AVKSGEIYSVSVSNA 453

Query: 475 MINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPL 534
           +I +  +AG I  A      +  E D   W +++ A     G+AE A    + +L ++ L
Sbjct: 454 LITMYAKAGSITSASRAFDLIRCERDTVSWTSMIIALA-QHGHAEEALELFETML-MEGL 511

Query: 535 NAPAHVVLCNIYAA 548
             P H+    +++A
Sbjct: 512 R-PDHITYVGVFSA 524



 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 106/410 (25%), Positives = 197/410 (48%), Gaps = 25/410 (6%)

Query: 16  SSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVS 75
           S +  Y+K G    AK +F  M  +++ S+NAM++  +Q G++  A   FE+M ER++V+
Sbjct: 186 SLLNMYAKCGDPMMAKVVFDRMVVKDISSWNAMIALHMQVGQMDLAMAQFEQMAERDIVT 245

Query: 76  WTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRN----------GELNEARK 125
           W +MI G    G    A  +F +M   +++S +   +  + +          GE   +  
Sbjct: 246 WNSMISGYNQRGYDLRALDMFSKMLRDSMLSPDRFTLASVLSACANLEKLCIGEQIHSHI 305

Query: 126 VFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEE--MEERNVVTWTSMISGYCRAGEVE 183
           V     I  ++  NA+I+ Y  C  +  A  L E+   ++  +  +T+++ GY + G++ 
Sbjct: 306 VTTGFDISGIV-LNALISMYSRCGGVETARRLIEQRGTKDLKIEGFTALLDGYIKLGDMN 364

Query: 184 EGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMIN 243
           E   +F  +  ++VV+WTAMI G+  +G + E++ LF  M G        N  +  +M++
Sbjct: 365 EAKNIFDSLKDRDVVAWTAMIVGYEQHGLYGEAINLFRSMVG---EEQRPNSYTLAAMLS 421

Query: 244 GYIRFGRLEEAQNLFDTVPVRDEISWTS----MIDGYLSVGQVSNAYYLFHNMP-DRDAV 298
                  L   + +  +     EI   S    +I  Y   G +++A   F  +  +RD V
Sbjct: 422 VASSLASLGHGKQIHGSAVKSGEIYSVSVSNALITMYAKAGSITSASRAFDLIRCERDTV 481

Query: 299 AWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVL 358
           +WT+MI  L Q+    EA  LF  M   G+ P + T+  +F A      ++ GRQ +  +
Sbjct: 482 SWTSMIIALAQHGHAEEALELFETMLMEGLRPDHITYVGVFSACTHAGLVNQGRQ-YFDM 540

Query: 359 MKTESESDLILEN--CLISMYAKCGVIDNAYNIFSNM-VSRDLVSWNSMV 405
           MK   +    L +  C++ ++ + G++  A      M +  D+V+W S++
Sbjct: 541 MKDVDKIIPTLSHYACMVDLFGRAGLLQEAQEFIEKMPIEPDVVTWGSLL 590



 Score = 72.0 bits (175), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 60/255 (23%), Positives = 115/255 (45%), Gaps = 51/255 (20%)

Query: 3   ERNHPKSLVVH-LTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEA 61
           E+   K L +   T+ +  Y K G ++EAK +F  +  R+VV++ AM+ G+ Q+G   EA
Sbjct: 338 EQRGTKDLKIEGFTALLDGYIKLGDMNEAKNIFDSLKDRDVVAWTAMIVGYEQHGLYGEA 397

Query: 62  RRLFEEM--PERNVVSWT-------------------------------------AMICG 82
             LF  M   E+   S+T                                     A+I  
Sbjct: 398 INLFRSMVGEEQRPNSYTLAAMLSVASSLASLGHGKQIHGSAVKSGEIYSVSVSNALITM 457

Query: 83  LADAGRVCEARKLFEEMP-ERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNV----IS 137
            A AG +  A + F+ +  ER+ VSW SM++ L ++G   EA ++F +M ++ +    I+
Sbjct: 458 YAKAGSITSASRAFDLIRCERDTVSWTSMIIALAQHGHAEEALELFETMLMEGLRPDHIT 517

Query: 138 WNAMIAGYVECCMMGEAIVLFEEMEERNVVT-----WTSMISGYCRAGEVEEGYCLFRRM 192
           +  + +      ++ +    F+ M++ + +      +  M+  + RAG ++E      +M
Sbjct: 518 YVGVFSACTHAGLVNQGRQYFDMMKDVDKIIPTLSHYACMVDLFGRAGLLQEAQEFIEKM 577

Query: 193 P-RKNVVSWTAMIGG 206
           P   +VV+W +++  
Sbjct: 578 PIEPDVVTWGSLLSA 592



 Score = 42.0 bits (97), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 24/122 (19%), Positives = 53/122 (43%), Gaps = 31/122 (25%)

Query: 354 IHCVLMKTESESDLILENCLISMYAKCGV------------------------------- 382
           +HC ++K+     + L N L+++Y+K G                                
Sbjct: 36  VHCRVIKSGLVFSVYLMNNLMNVYSKTGYALHARKLFDEMPLRTAFSWNTVLSAYAKRGD 95

Query: 383 IDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSA 442
           +D++   F  +  RD VSW +M++G+ + G  ++ +++   M+  G  P+  T   +L++
Sbjct: 96  MDSSCEFFDRLPQRDSVSWTTMIVGYKNIGQYHKAIRIMGEMMREGIEPSQFTLTNVLAS 155

Query: 443 CS 444
            +
Sbjct: 156 VA 157


>gi|297745590|emb|CBI40755.3| unnamed protein product [Vitis vinifera]
          Length = 789

 Score =  353 bits (907), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 217/724 (29%), Positives = 358/724 (49%), Gaps = 127/724 (17%)

Query: 1   MSERNHPKSLVVHLTSSI-------TKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFL 53
           ++ + H + + + L SSI         YS  G I +A  +F  +   NV S+N M+SGF 
Sbjct: 22  IARKLHAQLIFMGLKSSIFLQNHLLNMYSNCGLISDAYRVFGGIMFPNVYSWNTMISGFA 81

Query: 54  QNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRV------------------------ 89
            +G++ EA +LFE+MPER+ VSW +M+ G    G +                        
Sbjct: 82  DSGQMREAEKLFEKMPERDSVSWNSMMSGYFHNGELEATIKASGSLGYLKLALQLHGFAE 141

Query: 90  --------------------CEA----RKLFEEMPERNVVSWNSMVVGLIRNGELNEARK 125
                               C A    +K+F   P  ++  WNSM+ G  + G + +A +
Sbjct: 142 KFDFGIDTCVETSVLDMYIKCGAMDFAQKVFCRTPNPSLFCWNSMIYGYSKYGSVKKALE 201

Query: 126 VFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEER----NVVTWTSMISG------ 175
           +F  MP ++ +SWN MI+   +     E +  F EM  +    N +T+ S++S       
Sbjct: 202 LFAKMPERDTVSWNTMISILSQHGFGAETLNTFLEMWNQGFRPNSMTYASVLSACTSIYD 261

Query: 176 -----------------------------YCRAGEVEEGYCLFRRMPRKNVVSWTAMIGG 206
                                        Y + G +E    +F  +   N VSWT++IGG
Sbjct: 262 LEWGAHLHARIVRMEPCLDVYAGCGLIDMYAKCGRLESARQVFDGLTEHNAVSWTSLIGG 321

Query: 207 FAWNGFHKESLLLFIEMK---------------GIC-----------------DNGNNCN 234
            A  GF +E+L+LF +M+               G+C                   G + +
Sbjct: 322 VAQAGFQEEALVLFNQMREVPVASDQFTLATVLGVCLSQKDISIGEQLHAHTITRGLDSS 381

Query: 235 VQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPD 294
           V   N+++  Y + G + +A + F+ +P+RD ISWT+MI  +   G V  A   F  MP+
Sbjct: 382 VPVANALVTMYAKCGDVWKANHAFELMPIRDIISWTAMITAFSQAGDVEKAREYFDKMPE 441

Query: 295 RDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQI 354
           R+ ++W +M++  +Q   + E   ++++M   GV     TFS    A    A + LG QI
Sbjct: 442 RNVISWNSMLATYMQRGYWEEGLKVYIQMLREGVKTDWITFSTSISACADLAVLILGNQI 501

Query: 355 HCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLA 414
                K    S++ + N +++MY++CG I+ A  +FS++V ++LVSWN+M+ G++ +G  
Sbjct: 502 LAQAEKLGFSSNVSVANSVVTMYSRCGQIEEAQKMFSSIVMKNLVSWNAMMAGYAQNGQG 561

Query: 415 NETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVS 474
            + +++FE ML  G  P+ ++++ +LS CSH+G VS G   F +M   + I P  EH+V 
Sbjct: 562 RKVIEIFEKMLNIGNVPDQISYVSVLSGCSHSGFVSEGQYYFLSMTKDHGISPMSEHFVC 621

Query: 475 MINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPL 534
           M++LLGRAG++++A+  + ++PF+P+  IWGALL AC    GN ++AE A K LLELD  
Sbjct: 622 MVDLLGRAGQLEQAKNLINQMPFKPNAAIWGALLAACRI-HGNTKLAELAVKNLLELDAE 680

Query: 535 NAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQ 594
              ++ +L NIY+ SG+      +R  M  KGVRK PGCSW+  +  + +F   D    Q
Sbjct: 681 GPGSYCLLANIYSESGKIQGVTNVRKLMRDKGVRKNPGCSWIEVDNRVHVFTVDDTNHPQ 740

Query: 595 VAEI 598
           + ++
Sbjct: 741 IKDV 744



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 74/314 (23%), Positives = 131/314 (41%), Gaps = 88/314 (28%)

Query: 347 NIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVM 406
           +I + R++H  L+    +S + L+N L++MY+ CG+I +AY +F  ++  ++ SWN+M+ 
Sbjct: 19  SIPIARKLHAQLIFMGLKSSIFLQNHLLNMYSNCGLISDAYRVFGGIMFPNVYSWNTMIS 78

Query: 407 GFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLV--------SRGW----- 453
           GF+  G   E  K+FE M E     +SV++  ++S   H G +        S G+     
Sbjct: 79  GFADSGQMREAEKLFEKMPER----DSVSWNSMMSGYFHNGELEATIKASGSLGYLKLAL 134

Query: 454 ------ELFN---------AMFDVY----------KI---QPGPEHYV--SMINLLGRAG 483
                 E F+         ++ D+Y          K+    P P  +   SMI    + G
Sbjct: 135 QLHGFAEKFDFGIDTCVETSVLDMYIKCGAMDFAQKVFCRTPNPSLFCWNSMIYGYSKYG 194

Query: 484 KIKEAEEFVLRLP----------------------------------FEPDHRIWGALLG 509
            +K+A E   ++P                                  F P+   + ++L 
Sbjct: 195 SVKKALELFAKMPERDTVSWNTMISILSQHGFGAETLNTFLEMWNQGFRPNSMTYASVLS 254

Query: 510 ACGFCEGNAEIAEHAAKRLLELDP-LNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVR 568
           AC     + E   H   R++ ++P L+  A   L ++YA  GR +E  +   D    G+ 
Sbjct: 255 ACTSIY-DLEWGAHLHARIVRMEPCLDVYAGCGLIDMYAKCGR-LESARQVFD----GLT 308

Query: 569 KVPGCSWLMRNGGI 582
           +    SW    GG+
Sbjct: 309 EHNAVSWTSLIGGV 322


>gi|297741948|emb|CBI33393.3| unnamed protein product [Vitis vinifera]
          Length = 752

 Score =  353 bits (905), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 190/490 (38%), Positives = 286/490 (58%), Gaps = 10/490 (2%)

Query: 110 MVVGLIRNGELNEARKVFNSMPIK-NVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVT 168
           M+    RNGEL +AR +FN +P K N +  NAM+AGY +     EA  LF+ M  +++V+
Sbjct: 1   MITCYTRNGELAKARNLFNLLPYKWNPVCCNAMVAGYAKNRQFDEARRLFDAMPAKDLVS 60

Query: 169 WTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICD 228
           W SM++GY R GE+  G   F  M  ++VVSW  M+ GF   G    S   F ++     
Sbjct: 61  WNSMLTGYTRNGEMRLGLQFFEEMAERDVVSWNLMVDGFVEVGDLNSSWEFFEKIP---- 116

Query: 229 NGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYL 288
              N N  S  +M+ G+ RFG++ EA+ LFD +P+R+ ++W +MI  Y+    V  A  L
Sbjct: 117 ---NPNTVSWVTMLCGFARFGKIAEARRLFDQMPIRNVVAWNAMIAAYVQNCHVDEAISL 173

Query: 289 FHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANI 348
           F  MP++++++WT +I+G V+     EA  L  +M     P   +TF+    +    A +
Sbjct: 174 FMEMPEKNSISWTTVINGYVRMGKLDEARQLLNQMPYRNKPD-QSTFACGLSSCAHLAAL 232

Query: 349 DLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGF 408
            +G+Q+H ++MK+   +DL + N LI+MYAKCG I +A  +F ++   D+VSWNS++  +
Sbjct: 233 QVGKQLHQLVMKSGYATDLFVSNALITMYAKCGSISSAELLFKDIDHFDVVSWNSLIAAY 292

Query: 409 SHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPG 468
           + +G   E LK+F  M   G  P+ VTF+GILSACSH GL+ +G +LF  M   Y I+P 
Sbjct: 293 ALNGNGREALKLFHKMEVEGVAPDEVTFVGILSACSHVGLIDQGLKLFKCMVQAYNIEPL 352

Query: 469 PEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRL 528
            EHY  M++LLGRAG+++EA + V  +    +  IWGALLGAC    GN E+A+ AA++L
Sbjct: 353 AEHYACMVDLLGRAGRLEEAFQLVRGMKINANAGIWGALLGACRI-HGNLELAKFAAEKL 411

Query: 529 LELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSG 588
           LE +P     +V+L N+ A +GR  E  ++R  M  KG  K PG SW+     +  FLS 
Sbjct: 412 LEFEPHKTSNYVLLSNMQAEAGRWDEVARVRRLMKEKGAEKQPGWSWIELQNRVHAFLSE 471

Query: 589 DKIPAQVAEI 598
           D    +  E+
Sbjct: 472 DPAHPRAVEL 481



 Score =  207 bits (528), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 134/424 (31%), Positives = 215/424 (50%), Gaps = 13/424 (3%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQR-NVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSW 76
           IT Y++ G + +A+ LF L+P + N V  NAM++G+ +N +  EARRLF+ MP +++VSW
Sbjct: 2   ITCYTRNGELAKARNLFNLLPYKWNPVCCNAMVAGYAKNRQFDEARRLFDAMPAKDLVSW 61

Query: 77  TAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVI 136
            +M+ G    G +    + FEEM ER+VVSWN MV G +  G+LN + + F  +P  N +
Sbjct: 62  NSMLTGYTRNGEMRLGLQFFEEMAERDVVSWNLMVDGFVEVGDLNSSWEFFEKIPNPNTV 121

Query: 137 SWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKN 196
           SW  M+ G+     + EA  LF++M  RNVV W +MI+ Y +   V+E   LF  MP KN
Sbjct: 122 SWVTMLCGFARFGKIAEARRLFDQMPIRNVVAWNAMIAAYVQNCHVDEAISLFMEMPEKN 181

Query: 197 VVSWTAMIGGFAWNGFHKESLLLFIEM--KGICDNGN-NCNVQSCNSMINGYIRFGRLEE 253
            +SWT +I G+   G   E+  L  +M  +   D     C + SC  +    ++ G+ + 
Sbjct: 182 SISWTTVINGYVRMGKLDEARQLLNQMPYRNKPDQSTFACGLSSCAHL--AALQVGK-QL 238

Query: 254 AQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELF 313
            Q +  +    D     ++I  Y   G +S+A  LF ++   D V+W ++I+    N   
Sbjct: 239 HQLVMKSGYATDLFVSNALITMYAKCGSISSAELLFKDIDHFDVVSWNSLIAAYALNGNG 298

Query: 314 VEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQI-HCVLMKTESESDLILENC 372
            EA  LF +M   GV P   TF  +  A      ID G ++  C++     E       C
Sbjct: 299 REALKLFHKMEVEGVAPDEVTFVGILSACSHVGLIDQGLKLFKCMVQAYNIEPLAEHYAC 358

Query: 373 LISMYAKCGVIDNAYNIFSNM-VSRDLVSWNSMVMGFSHHGLANETLKVF--ESMLESGT 429
           ++ +  + G ++ A+ +   M ++ +   W +++     HG  N  L  F  E +LE   
Sbjct: 359 MVDLLGRAGRLEEAFQLVRGMKINANAGIWGALLGACRIHG--NLELAKFAAEKLLEFEP 416

Query: 430 HPNS 433
           H  S
Sbjct: 417 HKTS 420



 Score =  155 bits (391), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 99/322 (30%), Positives = 152/322 (47%), Gaps = 71/322 (22%)

Query: 7   PKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFE 66
           P   +V   S +T Y++ G +      F+ M +R+VVS+N M+ GF++ G L+ +   FE
Sbjct: 54  PAKDLVSWNSMLTGYTRNGEMRLGLQFFEEMAERDVVSWNLMVDGFVEVGDLNSSWEFFE 113

Query: 67  EMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKV 126
           ++P  N VSW  M+CG A  G++ EAR+LF++MP RNVV+WN+M+   ++N  ++EA  +
Sbjct: 114 KIPNPNTVSWVTMLCGFARFGKIAEARRLFDQMPIRNVVAWNAMIAAYVQNCHVDEAISL 173

Query: 127 FNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERN--------------------- 165
           F  MP KN ISW  +I GYV    + EA  L  +M  RN                     
Sbjct: 174 FMEMPEKNSISWTTVINGYVRMGKLDEARQLLNQMPYRNKPDQSTFACGLSSCAHLAALQ 233

Query: 166 -----------------VVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFA 208
                            +    ++I+ Y + G +     LF+ +   +VVSW ++I  +A
Sbjct: 234 VGKQLHQLVMKSGYATDLFVSNALITMYAKCGSISSAELLFKDIDHFDVVSWNSLIAAYA 293

Query: 209 WNGFHKESLLLFIEMK---------------------GICDNG---NNCNVQSCN----- 239
            NG  +E+L LF +M+                     G+ D G     C VQ+ N     
Sbjct: 294 LNGNGREALKLFHKMEVEGVAPDEVTFVGILSACSHVGLIDQGLKLFKCMVQAYNIEPLA 353

Query: 240 ----SMINGYIRFGRLEEAQNL 257
                M++   R GRLEEA  L
Sbjct: 354 EHYACMVDLLGRAGRLEEAFQL 375


>gi|357114699|ref|XP_003559133.1| PREDICTED: pentatricopeptide repeat-containing protein At2g35030,
           mitochondrial-like [Brachypodium distachyon]
          Length = 640

 Score =  352 bits (904), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 207/577 (35%), Positives = 309/577 (53%), Gaps = 48/577 (8%)

Query: 27  IDEAKALFQLMPQ--RNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLA 84
           +  A+AL++  P+  R       ML+G+ + GR+  ARRLF+ M  R VV+WT M+    
Sbjct: 83  LPRAEALYRAAPEAARGPALDAVMLAGYAKAGRVHRARRLFDGMLTRGVVAWTCMVDAYC 142

Query: 85  DAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAG 144
            AGRV EAR+LF+ MPER+VVSW +M+ G  R G   EAR++F+ MP +NV+SW  M+  
Sbjct: 143 RAGRVSEARELFDAMPERSVVSWTAMMHGYARAGMPREAREMFDRMPERNVVSWTVMVKA 202

Query: 145 YVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMI 204
           Y +     +A+ LF+ M +RN  +W ++ISG  RAG V+E   LF RMP +NVVSWTAM 
Sbjct: 203 YADGGYFQDAMGLFDRMPQRNSYSWNAVISGSFRAGRVDEAVRLFERMPHRNVVSWTAM- 261

Query: 205 GGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVR 264
                                                + G  + GR+  A+  FD +P +
Sbjct: 262 -------------------------------------VTGLAQNGRVSMAREFFDVMPCK 284

Query: 265 DEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEM- 323
           D  +W +MI  Y + G+++ A  LF +MP +D V+W  +I G  + EL  EA+ LF++M 
Sbjct: 285 DITAWNAMITAYANNGEMNEARRLFDSMPAKDLVSWNTVIDGYAKKELKDEASGLFLDML 344

Query: 324 RAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVI 383
           R+   P      SVL  +      +    QIH +       S+  L N L++MY++ G +
Sbjct: 345 RSAASPNSTTLISVLVISESMVEVV----QIHGLATTLGLLSETSLGNALLTMYSRIGDL 400

Query: 384 DNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSAC 443
            +A+  F  +  +D ++W SM+  F++HG A+  L+ F  MLE G +P+S TF  +LSAC
Sbjct: 401 PSAWLAFKRLEEKDAITWTSMIQAFANHGHASYALQAFAQMLEHGKNPSSTTFTAVLSAC 460

Query: 444 SHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEP-DHR 502
           SHAGLV  G  +F ++  VY ++   EHY  +I++LGRAG ++EA + V  +P +  D  
Sbjct: 461 SHAGLVEEGKSVFRSIRHVYGLERTIEHYTCLIDILGRAGNMREAMDVVNAMPPDICDDA 520

Query: 503 IWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPA-HVVLCNIYAASGRHVEEHKLRMD 561
           I   LLGAC       + A    + L + DP  +   ++VL N+ A+ G   E   +   
Sbjct: 521 ILRTLLGAC-MMHKEVDAAREVGEVLAKSDPSGSGGYYMVLANVLASGGLWDEMADVWKA 579

Query: 562 MGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
           M    VRK PG S +  +     F S D+I  Q AEI
Sbjct: 580 MKGSNVRKTPGVSQITVDARNHAFFSRDQIHPQCAEI 616



 Score =  218 bits (554), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 120/385 (31%), Positives = 200/385 (51%), Gaps = 5/385 (1%)

Query: 11  VVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPE 70
           VV  T  +  Y + G + EA+ LF  MP+R+VVS+ AM+ G+ + G   EAR +F+ MPE
Sbjct: 131 VVAWTCMVDAYCRAGRVSEARELFDAMPERSVVSWTAMMHGYARAGMPREAREMFDRMPE 190

Query: 71  RNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSM 130
           RNVVSWT M+   AD G   +A  LF+ MP+RN  SWN+++ G  R G ++EA ++F  M
Sbjct: 191 RNVVSWTVMVKAYADGGYFQDAMGLFDRMPQRNSYSWNAVISGSFRAGRVDEAVRLFERM 250

Query: 131 PIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFR 190
           P +NV+SW AM+ G  +   +  A   F+ M  +++  W +MI+ Y   GE+ E   LF 
Sbjct: 251 PHRNVVSWTAMVTGLAQNGRVSMAREFFDVMPCKDITAWNAMITAYANNGEMNEARRLFD 310

Query: 191 RMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGR 250
            MP K++VSW  +I G+A      E+  LF++M     + N+  + S   +    +   +
Sbjct: 311 SMPAKDLVSWNTVIDGYAKKELKDEASGLFLDMLRSAASPNSTTLISVLVISESMVEVVQ 370

Query: 251 LEEAQNLFDTVPVRDEISW-TSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQ 309
           +     L  T+ +  E S   +++  Y  +G + +A+  F  + ++DA+ WT+MI     
Sbjct: 371 I---HGLATTLGLLSETSLGNALLTMYSRIGDLPSAWLAFKRLEEKDAITWTSMIQAFAN 427

Query: 310 NELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTES-ESDLI 368
           +     A   F +M  HG  P + TF+ +  A      ++ G+ +   +      E  + 
Sbjct: 428 HGHASYALQAFAQMLEHGKNPSSTTFTAVLSACSHAGLVEEGKSVFRSIRHVYGLERTIE 487

Query: 369 LENCLISMYAKCGVIDNAYNIFSNM 393
              CLI +  + G +  A ++ + M
Sbjct: 488 HYTCLIDILGRAGNMREAMDVVNAM 512



 Score =  193 bits (491), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 129/427 (30%), Positives = 201/427 (47%), Gaps = 44/427 (10%)

Query: 7   PKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFE 66
           P+  VV  T+ +  Y++ G   EA+ +F  MP+RNVVS+  M+  +   G   +A  LF+
Sbjct: 158 PERSVVSWTAMMHGYARAGMPREAREMFDRMPERNVVSWTVMVKAYADGGYFQDAMGLFD 217

Query: 67  EMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKV 126
            MP+RN  SW A+I G   AGRV EA +LFE MP RNVVSW +MV GL +NG ++ AR+ 
Sbjct: 218 RMPQRNSYSWNAVISGSFRAGRVDEAVRLFERMPHRNVVSWTAMVTGLAQNGRVSMAREF 277

Query: 127 FNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGY 186
           F+ MP K++ +WNAMI  Y     M EA  LF+ M  +++V+W ++I GY +    +E  
Sbjct: 278 FDVMPCKDITAWNAMITAYANNGEMNEARRLFDSMPAKDLVSWNTVIDGYAKKELKDEAS 337

Query: 187 CLFRRMPRKNVV-SWTAMIGGFAWNGFHKESLLLFIEMKGICDN-GNNCNVQSCNSMING 244
            LF  M R     + T +I     +    ES++  +++ G+    G        N+++  
Sbjct: 338 GLFLDMLRSAASPNSTTLISVLVIS----ESMVEVVQIHGLATTLGLLSETSLGNALLTM 393

Query: 245 YIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNM----PDRDAVAW 300
           Y R G L  A   F  +  +D I+WTSMI  + + G  S A   F  M     +  +  +
Sbjct: 394 YSRIGDLPSAWLAFKRLEEKDAITWTSMIQAFANHGHASYALQAFAQMLEHGKNPSSTTF 453

Query: 301 TAMISGLVQNELFVEATYLFMEMR-------------------------------AHGVP 329
           TA++S      L  E   +F  +R                                + +P
Sbjct: 454 TAVLSACSHAGLVEEGKSVFRSIRHVYGLERTIEHYTCLIDILGRAGNMREAMDVVNAMP 513

Query: 330 P---LNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNA 386
           P    +A    L GA      +D  R++  VL K++          L ++ A  G+ D  
Sbjct: 514 PDICDDAILRTLLGACMMHKEVDAAREVGEVLAKSDPSGSGGYYMVLANVLASGGLWDEM 573

Query: 387 YNIFSNM 393
            +++  M
Sbjct: 574 ADVWKAM 580


>gi|224124578|ref|XP_002330058.1| predicted protein [Populus trichocarpa]
 gi|222871483|gb|EEF08614.1| predicted protein [Populus trichocarpa]
          Length = 568

 Score =  352 bits (904), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 184/472 (38%), Positives = 279/472 (59%), Gaps = 21/472 (4%)

Query: 142 IAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWT 201
           +AGY +     EA  LF++M E N ++W  ++SGY + G + E   +F +MP +NVVSWT
Sbjct: 1   MAGYFQNKRPREARKLFDKMPETNTISWNGLVSGYVQNGMISEARKVFDKMPERNVVSWT 60

Query: 202 AMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTV 261
           AMI G+   G  +E+ LLF  M          NV S   M+ G I  GR++EA+ LFD +
Sbjct: 61  AMIRGYVQEGLIEEAELLFWRMP-------ERNVVSWTVMLGGLIEDGRVDEARQLFDMM 113

Query: 262 PVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISG------------LVQ 309
           PV+D ++ T+MIDG  S G++  A  +F  MP R+ VAWT+MISG            + +
Sbjct: 114 PVKDVVASTNMIDGLCSEGRLIEAREIFDEMPQRNVVAWTSMISGEKDDGTWSTMIKIYE 173

Query: 310 NELF-VEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLI 368
            + F +EA  LF  M+  GV P   +   +    G+ A++D GRQ+H  L++++ + D+ 
Sbjct: 174 RKGFELEALALFSLMQREGVRPSFPSVISVLSVCGSLASLDHGRQVHSQLVRSQFDIDIY 233

Query: 369 LENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESG 428
           + + LI+MY KCG +  A  +F    S+D+V WNS++ G++ HG   + L+VF  M  S 
Sbjct: 234 VSSVLITMYIKCGDLVTAKRVFDRFSSKDIVMWNSIIAGYAQHGFGEKALEVFHDMFSSS 293

Query: 429 THPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEA 488
             P+ +TF+G+LSACS+ G V  G E+F +M   Y++ P  EHY  M++LLGRAGK+ EA
Sbjct: 294 IAPDEITFIGVLSACSYTGKVKEGLEIFESMKSKYQVDPKTEHYACMVDLLGRAGKLNEA 353

Query: 489 EEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAA 548
              +  +P E D  +WGALLGAC     N ++AE AAK+LL+L+P NA  +++L N+Y++
Sbjct: 354 MNLIENMPVEADAIVWGALLGACR-THKNLDLAEIAAKKLLQLEPNNAGPYILLSNLYSS 412

Query: 549 SGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEILL 600
             R  +  +LR  M  K +RK PGCSW+  +  + +F  G        E++L
Sbjct: 413 QSRWKDVVELRKTMRAKNLRKSPGCSWIEVDKKVHIFSGGGSTSHPEHEMIL 464



 Score =  204 bits (520), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 136/418 (32%), Positives = 204/418 (48%), Gaps = 85/418 (20%)

Query: 29  EAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGR 88
           EA+ LF  MP+ N +S+N ++SG++QNG +SEAR++F++MPERNVVSWTAMI G    G 
Sbjct: 12  EARKLFDKMPETNTISWNGLVSGYVQNGMISEARKVFDKMPERNVVSWTAMIRGYVQEGL 71

Query: 89  VCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVEC 148
           + EA  LF  MPERNVVSW  M+ GLI +G ++EAR++F+ MP+K+V++   MI G    
Sbjct: 72  IEEAELLFWRMPERNVVSWTVMLGGLIEDGRVDEARQLFDMMPVKDVVASTNMIDGLCSE 131

Query: 149 CMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFA 208
             + EA  +F+EM +RNVV WTSMIS     GE ++G             +W+ MI  + 
Sbjct: 132 GRLIEAREIFDEMPQRNVVAWTSMIS-----GEKDDG-------------TWSTMIKIYE 173

Query: 209 WNGFHKESLLLF---------------IEMKGIC------DNGNNCNVQSCNS------- 240
             GF  E+L LF               I +  +C      D+G   + Q   S       
Sbjct: 174 RKGFELEALALFSLMQREGVRPSFPSVISVLSVCGSLASLDHGRQVHSQLVRSQFDIDIY 233

Query: 241 ----MINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRD 296
               +I  YI+ G L  A+ +FD    +D + W S+I GY   G    A  +FH+     
Sbjct: 234 VSSVLITMYIKCGDLVTAKRVFDRFSSKDIVMWNSIIAGYAQHGFGEKALEVFHD----- 288

Query: 297 AVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHC 356
                                     M +  + P   TF  +  A   T  +  G +I  
Sbjct: 289 --------------------------MFSSSIAPDEITFIGVLSACSYTGKVKEGLEIFE 322

Query: 357 VLMKTESESDLILEN--CLISMYAKCGVIDNAYNIFSNM-VSRDLVSWNSMVMGFSHH 411
             MK++ + D   E+  C++ +  + G ++ A N+  NM V  D + W +++     H
Sbjct: 323 S-MKSKYQVDPKTEHYACMVDLLGRAGKLNEAMNLIENMPVEADAIVWGALLGACRTH 379



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/137 (27%), Positives = 73/137 (53%), Gaps = 10/137 (7%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNV---- 73
           IT Y K G +  AK +F     +++V +N++++G+ Q+G   +A  +F +M   ++    
Sbjct: 239 ITMYIKCGDLVTAKRVFDRFSSKDIVMWNSIIAGYAQHGFGEKALEVFHDMFSSSIAPDE 298

Query: 74  VSWTAMICGLADAGRVCEARKLFEEMPERNVVS-----WNSMVVGLIRNGELNEARKVFN 128
           +++  ++   +  G+V E  ++FE M  +  V      +  MV  L R G+LNEA  +  
Sbjct: 299 ITFIGVLSACSYTGKVKEGLEIFESMKSKYQVDPKTEHYACMVDLLGRAGKLNEAMNLIE 358

Query: 129 SMPIK-NVISWNAMIAG 144
           +MP++ + I W A++  
Sbjct: 359 NMPVEADAIVWGALLGA 375


>gi|358346115|ref|XP_003637117.1| Pentatricopeptide repeat-containing protein, partial [Medicago
           truncatula]
 gi|355503052|gb|AES84255.1| Pentatricopeptide repeat-containing protein, partial [Medicago
           truncatula]
          Length = 592

 Score =  351 bits (900), Expect = 7e-94,   Method: Compositional matrix adjust.
 Identities = 188/561 (33%), Positives = 316/561 (56%), Gaps = 67/561 (11%)

Query: 7   PKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFE 66
           P+SL   L   I+   + G +  A+ LF     RN V++N+M++G++Q   +++AR+LF+
Sbjct: 35  PQSLY-QLNKKISHLIRTGRLTAARTLFDSTNHRNTVTWNSMITGYVQRREIAKARQLFD 93

Query: 67  EMPERNVVSWTAMICGLAD---AGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEA 123
           EMP R++VSW  +I G      +  V E RKLF+ MP+R+ VSWN+++ G  +NG +++A
Sbjct: 94  EMPLRDIVSWNLIISGYFSCRGSRFVEEGRKLFDIMPQRDCVSWNTVISGYAKNGRMDQA 153

Query: 124 RKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERN------------------ 165
            ++F SMP +NV+S NA++ G++    +  A+  F +M ER+                  
Sbjct: 154 IEIFESMPERNVVSCNAVVNGFLLNGDVDSAVGFFRKMGERDSASLSGLVSGLVRNGKLD 213

Query: 166 -------------------VVTWTSMISGYCRAGEVEEGYCLF-------------RRMP 193
                              V  + ++I+GY + G VEE   +F             +R  
Sbjct: 214 MAAEILVEYGNEGDEKDDLVYAYNTLIAGYGQRGMVEEARHVFDGVMSDQGEGNEGKRRL 273

Query: 194 RKNVVSWTAMIGGFAWNGFHKESLLLFIEM--KGICDNGNNCNVQSCNSMINGYIRFGRL 251
           ++NVVSW +M+  +   G    +  LF  M  +  C         S N++I GY++ G +
Sbjct: 274 KRNVVSWNSMMMCYVKAGDVVSARELFDRMVERDAC---------SWNTVIGGYVQIGDM 324

Query: 252 EEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNE 311
           EEA  LF  +P+ D +SW S+I G+  +G +      F NMP ++ ++W ++I+G  +NE
Sbjct: 325 EEASKLFLEMPIPDVLSWNSIISGFSQIGDLKRVKEFFENMPHKNLISWNSVIAGYEKNE 384

Query: 312 LFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILEN 371
            +  A  LF +M+  G  P   T S +   +    ++ LG+QIH  + KT    DL + N
Sbjct: 385 DYKGAIELFSQMQLKGERPDRHTLSSILSVSTGLVDLYLGKQIHQFVTKTVV-PDLPINN 443

Query: 372 CLISMYAKCGVIDNAYNIFSNM-VSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTH 430
            LI+MY++CG I +A ++F+ M + +D+++WN+M+ G++ HG A + L++FE M      
Sbjct: 444 SLITMYSRCGEIGDARHVFNEMKLYKDVITWNAMIGGYAFHGFAAQALELFERMKGLKIQ 503

Query: 431 PNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEE 490
           P  +TF+ +L+AC+HAGLV  G   FN+M + Y I+P  EH+ S++++LGR G+++EA +
Sbjct: 504 PTYITFISVLNACAHAGLVEEGKRQFNSMINDYGIEPRVEHFASLVDILGRQGQLQEAMD 563

Query: 491 FVLRLPFEPDHRIWGALLGAC 511
            ++ +P +PD  +WGALLGAC
Sbjct: 564 LIVNMPVKPDKAVWGALLGAC 584



 Score =  197 bits (500), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 147/520 (28%), Positives = 235/520 (45%), Gaps = 98/520 (18%)

Query: 80  ICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWN 139
           I  L   GR+  AR LF+    RN V+WNSM+ G ++  E+ +AR++F+ MP+++++SWN
Sbjct: 45  ISHLIRTGRLTAARTLFDSTNHRNTVTWNSMITGYVQRREIAKARQLFDEMPLRDIVSWN 104

Query: 140 AMIAGYVEC---CMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKN 196
            +I+GY  C     + E   LF+ M +R+ V+W ++ISGY + G +++   +F  MP +N
Sbjct: 105 LIISGYFSCRGSRFVEEGRKLFDIMPQRDCVSWNTVISGYAKNGRMDQAIEIFESMPERN 164

Query: 197 VVSWTAMIGGFAWNGFHKESLLLFIEM------------KGICDNG-------------- 230
           VVS  A++ GF  NG    ++  F +M             G+  NG              
Sbjct: 165 VVSCNAVVNGFLLNGDVDSAVGFFRKMGERDSASLSGLVSGLVRNGKLDMAAEILVEYGN 224

Query: 231 ----NNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPV-------------RDEISWTSMI 273
                +  V + N++I GY + G +EEA+++FD V               R+ +SW SM+
Sbjct: 225 EGDEKDDLVYAYNTLIAGYGQRGMVEEARHVFDGVMSDQGEGNEGKRRLKRNVVSWNSMM 284

Query: 274 DGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNA 333
             Y+  G V +A  LF  M +RDA +W  +I G VQ     EA+ LF+EM      P+  
Sbjct: 285 MCYVKAGDVVSARELFDRMVERDACSWNTVIGGYVQIGDMEEASKLFLEM------PI-- 336

Query: 334 TFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNM 393
                                           D++  N +IS +++ G +      F NM
Sbjct: 337 -------------------------------PDVLSWNSIISGFSQIGDLKRVKEFFENM 365

Query: 394 VSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGW 453
             ++L+SWNS++ G+  +      +++F  M   G  P+  T   ILS  +  GLV    
Sbjct: 366 PHKNLISWNSVIAGYEKNEDYKGAIELFSQMQLKGERPDRHTLSSILSVST--GLVDLYL 423

Query: 454 ELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGF 513
                 F    + P      S+I +  R G+I +A      +    D   W A++G   F
Sbjct: 424 GKQIHQFVTKTVVPDLPINNSLITMYSRCGEIGDARHVFNEMKLYKDVITWNAMIGGYAF 483

Query: 514 CEGNAEIAEHAAKRL--LELDP--------LNAPAHVVLC 543
             G A  A    +R+  L++ P        LNA AH  L 
Sbjct: 484 -HGFAAQALELFERMKGLKIQPTYITFISVLNACAHAGLV 522



 Score =  155 bits (391), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 115/366 (31%), Positives = 180/366 (49%), Gaps = 71/366 (19%)

Query: 2   SERNHPKSLVVHLTSSITKYSKRGFIDEAKALF-------------QLMPQRNVVSYNAM 48
           +E +    LV    + I  Y +RG ++EA+ +F             +   +RNVVS+N+M
Sbjct: 224 NEGDEKDDLVYAYNTLIAGYGQRGMVEEARHVFDGVMSDQGEGNEGKRRLKRNVVSWNSM 283

Query: 49  LSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWN 108
           +  +++ G +  AR LF+ M ER+  SW  +I G    G + EA KLF EMP  +V+SWN
Sbjct: 284 MMCYVKAGDVVSARELFDRMVERDACSWNTVIGGYVQIGDMEEASKLFLEMPIPDVLSWN 343

Query: 109 SMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEME---ER- 164
           S++ G  + G+L   ++ F +MP KN+ISWN++IAGY +      AI LF +M+   ER 
Sbjct: 344 SIISGFSQIGDLKRVKEFFENMPHKNLISWNSVIAGYEKNEDYKGAIELFSQMQLKGERP 403

Query: 165 -------------------------NVVTWT---------SMISGYCRAGEVEEGYCLFR 190
                                      VT T         S+I+ Y R GE+ +   +F 
Sbjct: 404 DRHTLSSILSVSTGLVDLYLGKQIHQFVTKTVVPDLPINNSLITMYSRCGEIGDARHVFN 463

Query: 191 RMP-RKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCN----SMINGY 245
            M   K+V++W AMIGG+A++GF  ++L LF  MKG+        +Q       S++N  
Sbjct: 464 EMKLYKDVITWNAMIGGYAFHGFAAQALELFERMKGL-------KIQPTYITFISVLNAC 516

Query: 246 IRFGRLEEAQNLFDT------VPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDR-DAV 298
              G +EE +  F++      +  R E  + S++D     GQ+  A  L  NMP + D  
Sbjct: 517 AHAGLVEEGKRQFNSMINDYGIEPRVE-HFASLVDILGRQGQLQEAMDLIVNMPVKPDKA 575

Query: 299 AWTAMI 304
            W A++
Sbjct: 576 VWGALL 581


>gi|115455659|ref|NP_001051430.1| Os03g0775400 [Oryza sativa Japonica Group]
 gi|24899461|gb|AAN65031.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|108711328|gb|ABF99123.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113549901|dbj|BAF13344.1| Os03g0775400 [Oryza sativa Japonica Group]
 gi|215741536|dbj|BAG98031.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 804

 Score =  351 bits (900), Expect = 7e-94,   Method: Compositional matrix adjust.
 Identities = 211/617 (34%), Positives = 328/617 (53%), Gaps = 49/617 (7%)

Query: 25  GFIDEAKALFQLMP--QRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICG 82
           G + +A+ LF  +P  +RNV ++N++LS F ++GRL++AR +F EMPER+ VSWT M+ G
Sbjct: 79  GGLRDARRLFDEIPLARRNVFTWNSLLSMFAKSGRLADARGVFAEMPERDAVSWTVMVVG 138

Query: 83  LADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEA----RKVFNSMPIK----- 133
           L  AGR  EA K   +M           +  ++ +  + +A    RKV +S  +K     
Sbjct: 139 LNRAGRFGEAIKTLLDMTADGFTPTQFTLTNVLSSCAVTQAGAVGRKV-HSFVVKLGLGS 197

Query: 134 NVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMP 193
            V   N+++  Y +C     A  +FE M  R+V +W +M+S     G ++    LF  MP
Sbjct: 198 CVPVANSVLNMYGKCGDSETATTVFERMPVRSVSSWNAMVSLNTHLGRMDLAESLFESMP 257

Query: 194 RKNVVSWTAMIGGFAWNGFHKESLLLFIEM----------------KGICDNGNNC---- 233
            +++VSW AMI G+  NG   ++L LF  M                   C N  N     
Sbjct: 258 DRSIVSWNAMIAGYNQNGLDAKALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRIGK 317

Query: 234 -------------NVQSCNSMINGYIRFGRLEEAQNLFDTVPVRD--EISWTSMIDGYLS 278
                        N Q  N++I+ Y + G +E A+ + D     D   IS+T++++GY+ 
Sbjct: 318 QVHAYILRTEMAYNSQVTNALISTYAKSGSVENARRIMDQSMETDLNVISFTALLEGYVK 377

Query: 279 VGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVL 338
           +G + +A  +F  M +RD VAWTAMI G  QN    EA  LF  M   G  P + T + +
Sbjct: 378 IGDMESAREMFGVMNNRDVVAWTAMIVGYEQNGRNDEAIDLFRSMITCGPEPNSYTLAAV 437

Query: 339 FGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSR-D 397
                + A +D G+QIHC  +++  E    + N +I+MYA+ G    A  +F  +  R +
Sbjct: 438 LSVCASLACLDYGKQIHCRAIRSLLEQSSSVSNAIITMYARSGSFPWARRMFDQVCWRKE 497

Query: 398 LVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFN 457
            ++W SM++  + HG   E + +FE ML +G  P+ +T++G+LSACSHAG V+ G   ++
Sbjct: 498 TITWTSMIVALAQHGQGEEAVGLFEEMLRAGVEPDRITYVGVLSACSHAGFVNEGKRYYD 557

Query: 458 AMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGN 517
            + + ++I P   HY  M++LL RAG   EA+EF+ R+P EPD   WG+LL AC     N
Sbjct: 558 QIKNEHQIAPEMSHYACMVDLLARAGLFSEAQEFIRRMPVEPDAIAWGSLLSACRV-HKN 616

Query: 518 AEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLM 577
           AE+AE AA++LL +DP N+ A+  + N+Y+A GR  +  ++      K VRK  G SW  
Sbjct: 617 AELAELAAEKLLSIDPNNSGAYSAIANVYSACGRWSDAARIWKARKEKAVRKETGFSWTH 676

Query: 578 RNGGIQMFLSGDKIPAQ 594
               I +F + D +  Q
Sbjct: 677 IRSKIHVFGADDVVHPQ 693



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 127/491 (25%), Positives = 209/491 (42%), Gaps = 87/491 (17%)

Query: 16  SSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVS 75
           S +  Y K G  + A  +F+ MP R+V S+NAM+S     GR+  A  LFE MP+R++VS
Sbjct: 204 SVLNMYGKCGDSETATTVFERMPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPDRSIVS 263

Query: 76  WTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVV----------GLIRNGELNEARK 125
           W AMI G    G   +A KLF  M   + ++ +   +          G +R G+   A  
Sbjct: 264 WNAMIAGYNQNGLDAKALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYI 323

Query: 126 VFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEER--NVVTWTSMISGYCRAGEVE 183
           +   M   + ++ NA+I+ Y +   +  A  + ++  E   NV+++T+++ GY + G++E
Sbjct: 324 LRTEMAYNSQVT-NALISTYAKSGSVENARRIMDQSMETDLNVISFTALLEGYVKIGDME 382

Query: 184 EGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEM---------------KGIC- 227
               +F  M  ++VV+WTAMI G+  NG + E++ LF  M                 +C 
Sbjct: 383 SAREMFGVMNNRDVVAWTAMIVGYEQNGRNDEAIDLFRSMITCGPEPNSYTLAAVLSVCA 442

Query: 228 -----DNGNNCNVQS-----------CNSMINGYIRFGRLEEAQNLFDTVPVRDE-ISWT 270
                D G   + ++            N++I  Y R G    A+ +FD V  R E I+WT
Sbjct: 443 SLACLDYGKQIHCRAIRSLLEQSSSVSNAIITMYARSGSFPWARRMFDQVCWRKETITWT 502

Query: 271 SMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPP 330
           SM                               I  L Q+    EA  LF EM   GV P
Sbjct: 503 SM-------------------------------IVALAQHGQGEEAVGLFEEMLRAGVEP 531

Query: 331 LNATFSVLFGAAGATANIDLGRQIHCVLMKTESE--SDLILENCLISMYAKCGVIDNAYN 388
              T+  +  A      ++ G++ +  + K E +   ++    C++ + A+ G+   A  
Sbjct: 532 DRITYVGVLSACSHAGFVNEGKRYYDQI-KNEHQIAPEMSHYACMVDLLARAGLFSEAQE 590

Query: 389 IFSNM-VSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNS----VTFLGILSAC 443
               M V  D ++W S++     H  A       E +L     PN+         + SAC
Sbjct: 591 FIRRMPVEPDAIAWGSLLSACRVHKNAELAELAAEKLL--SIDPNNSGAYSAIANVYSAC 648

Query: 444 SHAGLVSRGWE 454
                 +R W+
Sbjct: 649 GRWSDAARIWK 659



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 86/322 (26%), Positives = 158/322 (49%), Gaps = 15/322 (4%)

Query: 238 CNSMINGYIRF----GRLEEAQNLFDTVPV--RDEISWTSMIDGYLSVGQVSNAYYLFHN 291
           CN++++ Y       G L +A+ LFD +P+  R+  +W S++  +   G++++A  +F  
Sbjct: 64  CNNLLSYYGETAGGAGGLRDARRLFDEIPLARRNVFTWNSLLSMFAKSGRLADARGVFAE 123

Query: 292 MPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLG 351
           MP+RDAV+WT M+ GL +   F EA    ++M A G  P   T + +  +   T    +G
Sbjct: 124 MPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMTADGFTPTQFTLTNVLSSCAVTQAGAVG 183

Query: 352 RQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHH 411
           R++H  ++K    S + + N +++MY KCG  + A  +F  M  R + SWN+MV   +H 
Sbjct: 184 RKVHSFVVKLGLGSCVPVANSVLNMYGKCGDSETATTVFERMPVRSVSSWNAMVSLNTHL 243

Query: 412 GLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEH 471
           G     + + ES+ ES    + V++  +++  +  GL ++  +LF+ M     + P    
Sbjct: 244 G----RMDLAESLFESMPDRSIVSWNAMIAGYNQNGLDAKALKLFSRMLHESSMAPDEFT 299

Query: 472 YVSMINLLGRAGKI---KEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRL 528
             S+++     G +   K+   ++LR     + ++  AL+       G+ E A     + 
Sbjct: 300 ITSVLSACANLGNVRIGKQVHAYILRTEMAYNSQVTNALISTYAK-SGSVENARRIMDQS 358

Query: 529 LELDPLNAPAHVVLCNIYAASG 550
           +E D LN  +   L   Y   G
Sbjct: 359 METD-LNVISFTALLEGYVKIG 379


>gi|225425182|ref|XP_002264325.1| PREDICTED: pentatricopeptide repeat-containing protein At2g13600
           [Vitis vinifera]
          Length = 684

 Score =  350 bits (899), Expect = 9e-94,   Method: Compositional matrix adjust.
 Identities = 208/591 (35%), Positives = 324/591 (54%), Gaps = 22/591 (3%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWT 77
           I  Y K   +D+A+ LF  MPQRN  ++N+++S   ++G L EA RLF  MPE +  SW 
Sbjct: 57  IDVYGKCDCLDDARKLFDRMPQRNTFTWNSLISVLTKSGFLDEAARLFGSMPEPDQCSWN 116

Query: 78  AMICGLADAGRVCEARKLFEEMPER----NVVSWNSMVVGLIRNGELNEARKVF----NS 129
           +M+ G A   R  E+ + F +M       N  S+ S +       +LN   +V      S
Sbjct: 117 SMVSGFAQHDRFEESLEYFVKMHREDFLLNEYSFGSALSACAGLMDLNMGTQVHALVSKS 176

Query: 130 MPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLF 189
               +V   +A+I  Y +C  +  A  +F  M ERN+VTW S+I+ Y + G   E   +F
Sbjct: 177 RYSTDVYMGSALIDMYSKCGSVACAEEVFSGMIERNLVTWNSLITCYEQNGPASEALEVF 236

Query: 190 RRMPRKNV----VSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGY 245
            RM    +    V+  +++   A     KE L   I  + +  N    ++   N++++ Y
Sbjct: 237 VRMMDSGLEPDEVTLASVVSACASLCALKEGLQ--IHARVVKTNKFRDDLVLGNALVDMY 294

Query: 246 IRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMIS 305
            +  ++ EA+ +FD + +R+ +S TSM+ GY     V  A ++F  M  R+ V+W A+I+
Sbjct: 295 AKCSKVNEARRVFDRMSIRNVVSETSMVSGYARAASVKAARFMFSKMTQRNVVSWNALIA 354

Query: 306 GLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMK----- 360
           G  QN    EA  LF  ++   + P + TF  L  A    A++ LGRQ H  ++K     
Sbjct: 355 GYTQNGENEEALRLFRLLKRESIWPTHYTFGNLLSACANLADLLLGRQAHTHVLKQGFEF 414

Query: 361 -TESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLK 419
            + +ESD+ + N LI MY KCG I++   +F  M  RD VSWN++++G++ +G   E L+
Sbjct: 415 QSGAESDIFVGNSLIDMYMKCGSIEDGSRVFEKMKERDCVSWNAIIVGYAQNGYGAEALQ 474

Query: 420 VFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLL 479
           +F  ML  G  P+ VT +G+L ACSHAGLV  G   F +M + + + P  +HY  M++LL
Sbjct: 475 IFRKMLVCGEKPDHVTMIGVLCACSHAGLVEEGRHYFFSM-EEHGLIPLKDHYTCMVDLL 533

Query: 480 GRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAH 539
           GRAG + EA+  +  +P  PD  +WG+LL AC    GN E+ +HAA++LLE+DP N+  +
Sbjct: 534 GRAGCLNEAKNLIEAMPVNPDAVVWGSLLAACKV-HGNIEMGKHAAEKLLEIDPWNSGPY 592

Query: 540 VVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDK 590
           V+L N+YA  GR  +  ++R  M  +GV K PGCSW+     + +FL  DK
Sbjct: 593 VLLSNMYAELGRWGDVVRVRKLMRQQGVTKQPGCSWIEVESRVHVFLVKDK 643



 Score =  151 bits (382), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 74/257 (28%), Positives = 139/257 (54%)

Query: 239 NSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAV 298
           N +I+ Y +   L++A+ LFD +P R+  +W S+I      G +  A  LF +MP+ D  
Sbjct: 54  NRLIDVYGKCDCLDDARKLFDRMPQRNTFTWNSLISVLTKSGFLDEAARLFGSMPEPDQC 113

Query: 299 AWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVL 358
           +W +M+SG  Q++ F E+   F++M          +F     A     ++++G Q+H ++
Sbjct: 114 SWNSMVSGFAQHDRFEESLEYFVKMHREDFLLNEYSFGSALSACAGLMDLNMGTQVHALV 173

Query: 359 MKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETL 418
            K+   +D+ + + LI MY+KCG +  A  +FS M+ R+LV+WNS++  +  +G A+E L
Sbjct: 174 SKSRYSTDVYMGSALIDMYSKCGSVACAEEVFSGMIERNLVTWNSLITCYEQNGPASEAL 233

Query: 419 KVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINL 478
           +VF  M++SG  P+ VT   ++SAC+    +  G ++   +    K +       +++++
Sbjct: 234 EVFVRMMDSGLEPDEVTLASVVSACASLCALKEGLQIHARVVKTNKFRDDLVLGNALVDM 293

Query: 479 LGRAGKIKEAEEFVLRL 495
             +  K+ EA     R+
Sbjct: 294 YAKCSKVNEARRVFDRM 310



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 80/292 (27%), Positives = 131/292 (44%), Gaps = 58/292 (19%)

Query: 1   MSERNHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSE 60
           MS RN     VV  TS ++ Y++   +  A+ +F  M QRNVVS+NA+++G+ QNG   E
Sbjct: 310 MSIRN-----VVSETSMVSGYARAASVKAARFMFSKMTQRNVVSWNALIAGYTQNGENEE 364

Query: 61  ARRLFEEMPERNV--VSWT-----AMICGLAD--AGRVCEARKL-----FEEMPERNVVS 106
           A RLF  +   ++    +T     +    LAD   GR      L     F+   E ++  
Sbjct: 365 ALRLFRLLKRESIWPTHYTFGNLLSACANLADLLLGRQAHTHVLKQGFEFQSGAESDIFV 424

Query: 107 WNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEM----E 162
            NS++   ++ G + +  +VF  M  ++ +SWNA+I GY +     EA+ +F +M    E
Sbjct: 425 GNSLIDMYMKCGSIEDGSRVFEKMKERDCVSWNAIIVGYAQNGYGAEALQIFRKMLVCGE 484

Query: 163 ERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIE 222
           + + VT   ++     AG VEEG   F  M    ++               K+     ++
Sbjct: 485 KPDHVTMIGVLCACSHAGLVEEGRHYFFSMEEHGLIPL-------------KDHYTCMVD 531

Query: 223 MKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVR-DEISWTSMI 273
           + G                     R G L EA+NL + +PV  D + W S++
Sbjct: 532 LLG---------------------RAGCLNEAKNLIEAMPVNPDAVVWGSLL 562



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 58/250 (23%), Positives = 102/250 (40%), Gaps = 36/250 (14%)

Query: 330 PLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNI 389
           P ++ F+ L  +   + +    R +H  ++ T+   ++ ++N LI +Y KC  +D+A  +
Sbjct: 13  PNSSPFAKLLDSCLRSRSARGTRLVHARILMTQFSMEIFIQNRLIDVYGKCDCLDDARKL 72

Query: 390 FSNMVSR-------------------------------DLVSWNSMVMGFSHHGLANETL 418
           F  M  R                               D  SWNSMV GF+ H    E+L
Sbjct: 73  FDRMPQRNTFTWNSLISVLTKSGFLDEAARLFGSMPEPDQCSWNSMVSGFAQHDRFEESL 132

Query: 419 KVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINL 478
           + F  M       N  +F   LSAC+    ++ G ++ +A+    +         ++I++
Sbjct: 133 EYFVKMHREDFLLNEYSFGSALSACAGLMDLNMGTQV-HALVSKSRYSTDVYMGSALIDM 191

Query: 479 LGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPA 538
             + G +  AEE V     E +   W +L+  C    G A  A     R+  +D    P 
Sbjct: 192 YSKCGSVACAEE-VFSGMIERNLVTWNSLI-TCYEQNGPASEALEVFVRM--MDSGLEPD 247

Query: 539 HVVLCNIYAA 548
            V L ++ +A
Sbjct: 248 EVTLASVVSA 257


>gi|297740626|emb|CBI30808.3| unnamed protein product [Vitis vinifera]
          Length = 660

 Score =  350 bits (899), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 192/549 (34%), Positives = 311/549 (56%), Gaps = 10/549 (1%)

Query: 48  MLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSW 107
           M++  L+N R+ EAR +F+++   +V  +T MI G A   R   A +LF EMP ++VVSW
Sbjct: 1   MITDHLRNQRIDEARTVFDKVSFPDVYLYTMMITGYARNYRFDHALQLFYEMPVKDVVSW 60

Query: 108 NSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVV 167
           NSM+ G     +L  ARK+F+ MP ++V+SW  MI G+++   +  A  LF +M  R++ 
Sbjct: 61  NSMIKGCFDCADLTMARKLFDEMPERSVVSWTTMINGFLQFGKIEVAEGLFYKMPFRDIA 120

Query: 168 TWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGI- 226
            W SMI GYC  G VE+G  LF+ MP +NV+SWT+MIGG   +G  +E+L LF +M G  
Sbjct: 121 AWNSMIYGYCCNGRVEDGLRLFQEMPCRNVISWTSMIGGLDQHGRSEEALGLFRQMMGCG 180

Query: 227 -----CDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQ 281
                  +   C + +C    N    +  ++   ++F      D     ++I  Y +  Q
Sbjct: 181 VEVKPTSSTYCCVITAC---ANASALYQGVQIHAHVFKLGYSFDAYISAALITFYANCKQ 237

Query: 282 VSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGA 341
           + ++  +FH     + V WTA+++G   N    +A  +F EM   GV P  ++F+    +
Sbjct: 238 MEDSLRVFHGKLHMNVVIWTALVTGYGLNCKHEDALKVFGEMMREGVLPNQSSFTSALNS 297

Query: 342 AGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSW 401
                 +D GR+IH   +K   E+D+ + N LI MY +CG +++   IF  +  +++VSW
Sbjct: 298 CCGLEALDWGREIHTAAVKLGLETDVFVGNSLIVMYYRCGNLNDGVVIFKRISKKNIVSW 357

Query: 402 NSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFD 461
           NS+++G + HG     L  F  M+ S   P+ +TF G+LSACSH+G+  +G  LF    +
Sbjct: 358 NSVIVGCAQHGCGMWALAFFNQMVRSMVEPDEITFTGLLSACSHSGMSQKGRCLFKYFSE 417

Query: 462 VYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIA 521
               +   +HY  M+++LGR+GK++EAEE +  +P + +  +W  LL AC       E+A
Sbjct: 418 NKSAEVKLDHYACMVDILGRSGKLEEAEELIRNMPVKANSMVWLVLLSACTM-HSKLEVA 476

Query: 522 EHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGG 581
           E AAK +++L+P  + A+V+L N+YA++ R  +  ++R +M  +G+ K PG SW+   G 
Sbjct: 477 ERAAKCIIDLEPHCSSAYVLLSNLYASASRWSDVSRIRREMKQRGITKQPGRSWITIKGW 536

Query: 582 IQMFLSGDK 590
              FLSGD+
Sbjct: 537 RNEFLSGDR 545



 Score =  164 bits (414), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 141/561 (25%), Positives = 233/561 (41%), Gaps = 87/561 (15%)

Query: 15  TSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVV 74
           T  IT Y++    D A  LF  MP ++VVS+N+M+ G      L+ AR+LF+EMPER+VV
Sbjct: 30  TMMITGYARNYRFDHALQLFYEMPVKDVVSWNSMIKGCFDCADLTMARKLFDEMPERSVV 89

Query: 75  SWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKN 134
           SWT MI G    G++  A  LF +MP R++ +WNSM+ G   NG + +  ++F  MP +N
Sbjct: 90  SWTTMINGFLQFGKIEVAEGLFYKMPFRDIAAWNSMIYGYCCNGRVEDGLRLFQEMPCRN 149

Query: 135 VISWNAMIAGYVECCMMGEAIVLFEEM--------------------------------- 161
           VISW +MI G  +     EA+ LF +M                                 
Sbjct: 150 VISWTSMIGGLDQHGRSEEALGLFRQMMGCGVEVKPTSSTYCCVITACANASALYQGVQI 209

Query: 162 --------EERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFH 213
                      +     ++I+ Y    ++E+   +F      NVV WTA++ G+  N  H
Sbjct: 210 HAHVFKLGYSFDAYISAALITFYANCKQMEDSLRVFHGKLHMNVVIWTALVTGYGLNCKH 269

Query: 214 KESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVR-----DEIS 268
           +++L +F EM      G   N  S  S +N       L+  + +  T  V+     D   
Sbjct: 270 EDALKVFGEMM---REGVLPNQSSFTSALNSCCGLEALDWGREI-HTAAVKLGLETDVFV 325

Query: 269 WTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGV 328
             S+I  Y   G +++   +F  +  ++ V+W ++I G  Q+   + A   F +M    V
Sbjct: 326 GNSLIVMYYRCGNLNDGVVIFKRISKKNIVSWNSVIVGCAQHGCGMWALAFFNQMVRSMV 385

Query: 329 PPLNATFSVLFGAAGATANIDLGRQIHCVLMKTES-ESDLILENCLISMYAKCGVIDNAY 387
            P   TF+ L  A   +     GR +     + +S E  L    C++ +  + G ++ A 
Sbjct: 386 EPDEITFTGLLSACSHSGMSQKGRCLFKYFSENKSAEVKLDHYACMVDILGRSGKLEEAE 445

Query: 388 NIFSNM-VSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFL--------- 437
            +  NM V  + + W  ++   + H       +  + +++   H +S   L         
Sbjct: 446 ELIRNMPVKANSMVWLVLLSACTMHSKLEVAERAAKCIIDLEPHCSSAYVLLSNLYASAS 505

Query: 438 ---------------GILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRA 482
                          GI      + +  +GW   N      +  P  +     +  LG  
Sbjct: 506 RWSDVSRIRREMKQRGITKQPGRSWITIKGWR--NEFLSGDRSHPSSDRIYQKLEWLG-- 561

Query: 483 GKIKEAEEFVLRLPFEPDHRI 503
           GK+KE       L + PD R 
Sbjct: 562 GKLKE-------LGYVPDQRF 575


>gi|225450539|ref|XP_002277347.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 808

 Score =  350 bits (899), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 200/604 (33%), Positives = 330/604 (54%), Gaps = 41/604 (6%)

Query: 27  IDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNV--VSWTAMICGLA 84
           +D +  +F  +   N   +N M+  ++Q+    +A  L++ M + NV   ++T  +   A
Sbjct: 91  LDYSLQIFDRIENSNGFMWNTMMRAYIQSNSAEKALLLYKLMVKNNVGPDNYTYPLVVQA 150

Query: 85  DAGRVCE--ARKLFEEMP----ERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISW 138
            A R+ E   +++ + +     + +V   N+++      G + +ARK+F+  P+ + +SW
Sbjct: 151 CAVRLLEFGGKEIHDHVLKVGFDSDVYVQNTLINMYAVCGNMRDARKLFDESPVLDSVSW 210

Query: 139 NAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVV 198
           N+++AGYV+   + EA ++F++M +RN+V   SMI    + G+V E + LF  M  K++V
Sbjct: 211 NSILAGYVKKGDVEEAKLIFDQMPQRNIVASNSMIVLLGKMGQVMEAWKLFNEMDEKDMV 270

Query: 199 SWTAMIGGFAWNGFHKESLLLFIEMKG--------------------------------I 226
           SW+A+I G+  NG ++E+L++FIEM                                  +
Sbjct: 271 SWSALISGYEQNGMYEEALVMFIEMNANGMRLDEVVVVSVLSACAHLSIVKTGKMIHGLV 330

Query: 227 CDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAY 286
              G    V   N++I+ Y   G + +AQ LF+     D+ISW SMI G +  G V  A 
Sbjct: 331 IRMGIESYVNLQNALIHMYSGSGEIMDAQKLFNGSHNLDQISWNSMISGCMKCGSVEKAR 390

Query: 287 YLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATA 346
            LF  MP++D V+W+A+ISG  Q++ F E   LF EM+   + P       +  A    A
Sbjct: 391 ALFDVMPEKDIVSWSAVISGYAQHDCFSETLALFHEMQLGQIRPDETILVSVISACTHLA 450

Query: 347 NIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVM 406
            +D G+ +H  + K   + ++IL   L+ MY KCG ++NA  +F+ M  + + SWN++++
Sbjct: 451 ALDQGKWVHAYIRKNGLKVNVILGTTLLDMYMKCGCVENALEVFNGMEEKGVSSWNALII 510

Query: 407 GFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQ 466
           G + +GL   +L +F  M  +G  PN +TF+G+L AC H GLV  G   F +M + + I+
Sbjct: 511 GLAVNGLVERSLDMFSEMKNNGVIPNEITFMGVLGACRHMGLVDEGRCHFASMIEKHGIE 570

Query: 467 PGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAK 526
           P  +HY  M++LLGRAG + EAE+ +  +P  PD   WGALLGAC    G+ E+ E   +
Sbjct: 571 PNVKHYGCMVDLLGRAGLLNEAEKLIESMPMAPDVATWGALLGACK-KHGDTEMGERVGR 629

Query: 527 RLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFL 586
           +L+EL P +   HV+L NI+A+ G   +  ++R  M  +GV K PGCS +  NG +  FL
Sbjct: 630 KLIELQPDHDGFHVLLSNIFASKGDWEDVLEVRGMMKQQGVVKTPGCSLIEANGVVHEFL 689

Query: 587 SGDK 590
           +GDK
Sbjct: 690 AGDK 693



 Score =  178 bits (451), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 131/470 (27%), Positives = 229/470 (48%), Gaps = 52/470 (11%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWT 77
           I  Y+  G + +A+ LF   P  + VS+N++L+G+++ G + EA+ +F++MP+RN+V+  
Sbjct: 183 INMYAVCGNMRDARKLFDESPVLDSVSWNSILAGYVKKGDVEEAKLIFDQMPQRNIVASN 242

Query: 78  AMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVF-----NSMPI 132
           +MI  L   G+V EA KLF EM E+++VSW++++ G  +NG   EA  +F     N M +
Sbjct: 243 SMIVLLGKMGQVMEAWKLFNEMDEKDMVSWSALISGYEQNGMYEEALVMFIEMNANGMRL 302

Query: 133 KNVIS----------------------------------WNAMIAGYVECCMMGEAIVLF 158
             V+                                    NA+I  Y     + +A  LF
Sbjct: 303 DEVVVVSVLSACAHLSIVKTGKMIHGLVIRMGIESYVNLQNALIHMYSGSGEIMDAQKLF 362

Query: 159 EEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLL 218
                 + ++W SMISG  + G VE+   LF  MP K++VSW+A+I G+A +    E+L 
Sbjct: 363 NGSHNLDQISWNSMISGCMKCGSVEKARALFDVMPEKDIVSWSAVISGYAQHDCFSETLA 422

Query: 219 LFIEMK-GICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVR----DEISWTSMI 273
           LF EM+ G         V    S+I+       L++ + +   +       + I  T+++
Sbjct: 423 LFHEMQLGQIRPDETILV----SVISACTHLAALDQGKWVHAYIRKNGLKVNVILGTTLL 478

Query: 274 DGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNA 333
           D Y+  G V NA  +F+ M ++   +W A+I GL  N L   +  +F EM+ +GV P   
Sbjct: 479 DMYMKCGCVENALEVFNGMEEKGVSSWNALIIGLAVNGLVERSLDMFSEMKNNGVIPNEI 538

Query: 334 TFSVLFGAAGATANIDLGR-QIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSN 392
           TF  + GA      +D GR     ++ K   E ++    C++ +  + G+++ A  +  +
Sbjct: 539 TFMGVLGACRHMGLVDEGRCHFASMIEKHGIEPNVKHYGCMVDLLGRAGLLNEAEKLIES 598

Query: 393 M-VSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILS 441
           M ++ D+ +W +++     HG      +V   ++E    P+   F  +LS
Sbjct: 599 MPMAPDVATWGALLGACKKHGDTEMGERVGRKLIE--LQPDHDGFHVLLS 646



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 100/382 (26%), Positives = 165/382 (43%), Gaps = 87/382 (22%)

Query: 7   PKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFE 66
           P+  +V   S I    K G + EA  LF  M ++++VS++A++SG+ QNG   EA  +F 
Sbjct: 234 PQRNIVASNSMIVLLGKMGQVMEAWKLFNEMDEKDMVSWSALISGYEQNGMYEEALVMFI 293

Query: 67  EM-------------------PERNVVSWTAMICGL--------------------ADAG 87
           EM                      ++V    MI GL                    + +G
Sbjct: 294 EMNANGMRLDEVVVVSVLSACAHLSIVKTGKMIHGLVIRMGIESYVNLQNALIHMYSGSG 353

Query: 88  RVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVE 147
            + +A+KLF      + +SWNSM+ G ++ G + +AR +F+ MP K+++SW+A+I+GY +
Sbjct: 354 EIMDAQKLFNGSHNLDQISWNSMISGCMKCGSVEKARALFDVMPEKDIVSWSAVISGYAQ 413

Query: 148 CCMMGEAIVLFEEME---------------------------------------ERNVVT 168
                E + LF EM+                                       + NV+ 
Sbjct: 414 HDCFSETLALFHEMQLGQIRPDETILVSVISACTHLAALDQGKWVHAYIRKNGLKVNVIL 473

Query: 169 WTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICD 228
            T+++  Y + G VE    +F  M  K V SW A+I G A NG  + SL +F EMK   +
Sbjct: 474 GTTLLDMYMKCGCVENALEVFNGMEEKGVSSWNALIIGLAVNGLVERSLDMFSEMK---N 530

Query: 229 NGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEIS-----WTSMIDGYLSVGQVS 283
           NG   N  +   ++      G ++E +  F ++  +  I      +  M+D     G ++
Sbjct: 531 NGVIPNEITFMGVLGACRHMGLVDEGRCHFASMIEKHGIEPNVKHYGCMVDLLGRAGLLN 590

Query: 284 NAYYLFHNMP-DRDAVAWTAMI 304
            A  L  +MP   D   W A++
Sbjct: 591 EAEKLIESMPMAPDVATWGALL 612



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 48/151 (31%), Positives = 73/151 (48%), Gaps = 10/151 (6%)

Query: 4   RNHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARR 63
           +N  K  V+  T+ +  Y K G ++ A  +F  M ++ V S+NA++ G   NG +  +  
Sbjct: 464 KNGLKVNVILGTTLLDMYMKCGCVENALEVFNGMEEKGVSSWNALIIGLAVNGLVERSLD 523

Query: 64  LFEEMPERNVVSWTAMICGLADA----GRVCEARKLFEEMPER-----NVVSWNSMVVGL 114
           +F EM    V+       G+  A    G V E R  F  M E+     NV  +  MV  L
Sbjct: 524 MFSEMKNNGVIPNEITFMGVLGACRHMGLVDEGRCHFASMIEKHGIEPNVKHYGCMVDLL 583

Query: 115 IRNGELNEARKVFNSMPIK-NVISWNAMIAG 144
            R G LNEA K+  SMP+  +V +W A++  
Sbjct: 584 GRAGLLNEAEKLIESMPMAPDVATWGALLGA 614


>gi|359497567|ref|XP_002265980.2| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like, partial [Vitis vinifera]
          Length = 599

 Score =  350 bits (898), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 186/498 (37%), Positives = 289/498 (58%), Gaps = 11/498 (2%)

Query: 103 NVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYV-ECCMMGEAIVLFEEM 161
           NV+S N ++   IR+G+LN A +VF SM +K  ++WN+M+AGY      +  A  LF+ +
Sbjct: 4   NVISSNRVITNHIRSGDLNSALRVFESMTVKTTVTWNSMLAGYSNRRGKIKVARQLFDRI 63

Query: 162 EERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFI 221
            E ++ ++  M++ Y    +VE     F +MP K+  SW  MI GF+ NG   ++  LF+
Sbjct: 64  PEPDIFSYNIMLACYLHNADVESARLFFDQMPVKDTASWNTMISGFSQNGMMDQARELFL 123

Query: 222 EMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQ 281
            M          N  S N+MI+GY+  G L+ A+ LF+  PVR  ++WT+MI G++  G+
Sbjct: 124 VMPVR-------NSVSWNAMISGYVESGDLDLAKQLFEVAPVRSVVAWTAMITGFMKFGK 176

Query: 282 VSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFS-VLFG 340
           +  A   F  MP ++ V W AMI+G ++N        LF  M   G  P  ++ S VL G
Sbjct: 177 IELAEKYFEEMPMKNLVTWNAMIAGYIENCQAENGLKLFKRMVESGFRPNPSSLSSVLLG 236

Query: 341 AAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVS 400
            +  +A + LG+Q+H ++ K+    ++     L+SMY KCG +++A+ +F  M  +D+V+
Sbjct: 237 CSNLSA-LKLGKQVHQLICKSPVSWNITAGTSLLSMYCKCGDLEDAWKLFLVMPQKDVVT 295

Query: 401 WNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMF 460
           WN+M+ G++ HG   + L +F+ M + G  P+ +TF+ +LSAC+HAG V  G E FN+M 
Sbjct: 296 WNAMISGYAQHGAGEKALYLFDKMRDEGMKPDWITFVAVLSACNHAGFVDLGIEYFNSMV 355

Query: 461 DVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEI 520
             Y ++  P+HY  +++LLGR GK+ EA + + ++PF+P   I+G LLGAC     N E+
Sbjct: 356 RDYGVEAKPDHYTCVVDLLGRGGKLVEAVDLIKKMPFKPHSAIFGTLLGACRI-HKNLEL 414

Query: 521 AEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNG 580
           AE AAK LL LDP +A  +V L N+YAA  R      +R  M    V K PG SW+    
Sbjct: 415 AEFAAKNLLNLDPESAAGYVQLANVYAAMNRWDHVAMVRRSMKDNKVIKTPGYSWIEVKS 474

Query: 581 GIQMFLSGDKIPAQVAEI 598
            +  F SGD+I  ++A I
Sbjct: 475 VVHEFRSGDRIHPELAFI 492



 Score =  216 bits (551), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 127/394 (32%), Positives = 215/394 (54%), Gaps = 15/394 (3%)

Query: 9   SLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFL-QNGRLSEARRLFEE 67
           S V+     IT + + G ++ A  +F+ M  +  V++N+ML+G+  + G++  AR+LF+ 
Sbjct: 3   SNVISSNRVITNHIRSGDLNSALRVFESMTVKTTVTWNSMLAGYSNRRGKIKVARQLFDR 62

Query: 68  MPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVF 127
           +PE ++ S+  M+        V  AR  F++MP ++  SWN+M+ G  +NG +++AR++F
Sbjct: 63  IPEPDIFSYNIMLACYLHNADVESARLFFDQMPVKDTASWNTMISGFSQNGMMDQARELF 122

Query: 128 NSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYC 187
             MP++N +SWNAMI+GYVE   +  A  LFE    R+VV WT+MI+G+ + G++E    
Sbjct: 123 LVMPVRNSVSWNAMISGYVESGDLDLAKQLFEVAPVRSVVAWTAMITGFMKFGKIELAEK 182

Query: 188 LFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIR 247
            F  MP KN+V+W AMI G+  N   +  L LF   K + ++G   N  S +S++ G   
Sbjct: 183 YFEEMPMKNLVTWNAMIAGYIENCQAENGLKLF---KRMVESGFRPNPSSLSSVLLGCSN 239

Query: 248 FGRLEEAQNLFDTVPVRDEISW-----TSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTA 302
              L+  + +   +  +  +SW     TS++  Y   G + +A+ LF  MP +D V W A
Sbjct: 240 LSALKLGKQVHQLI-CKSPVSWNITAGTSLLSMYCKCGDLEDAWKLFLVMPQKDVVTWNA 298

Query: 303 MISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMK-- 360
           MISG  Q+    +A YLF +MR  G+ P   TF  +  A      +DLG +    +++  
Sbjct: 299 MISGYAQHGAGEKALYLFDKMRDEGMKPDWITFVAVLSACNHAGFVDLGIEYFNSMVRDY 358

Query: 361 -TESESDLILENCLISMYAKCGVIDNAYNIFSNM 393
             E++ D     C++ +  + G +  A ++   M
Sbjct: 359 GVEAKPDHY--TCVVDLLGRGGKLVEAVDLIKKM 390



 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 79/260 (30%), Positives = 140/260 (53%), Gaps = 16/260 (6%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWT 77
           I+ Y + G +D AK LF++ P R+VV++ AM++GF++ G++  A + FEEMP +N+V+W 
Sbjct: 137 ISGYVESGDLDLAKQLFEVAPVRSVVAWTAMITGFMKFGKIELAEKYFEEMPMKNLVTWN 196

Query: 78  AMICGLADAGRVCEARKLFEEMPER----NVVSWNSMVVGLIRNGELNEARKVFNSMPIK 133
           AMI G  +  +     KLF+ M E     N  S +S+++G      L   ++V + +  K
Sbjct: 197 AMIAGYIENCQAENGLKLFKRMVESGFRPNPSSLSSVLLGCSNLSALKLGKQV-HQLICK 255

Query: 134 NVISWN-----AMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCL 188
           + +SWN     ++++ Y +C  + +A  LF  M +++VVTW +MISGY + G  E+   L
Sbjct: 256 SPVSWNITAGTSLLSMYCKCGDLEDAWKLFLVMPQKDVVTWNAMISGYAQHGAGEKALYL 315

Query: 189 FRRMP----RKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMING 244
           F +M     + + +++ A++      GF    +  F  M  + D G          +++ 
Sbjct: 316 FDKMRDEGMKPDWITFVAVLSACNHAGFVDLGIEYFNSM--VRDYGVEAKPDHYTCVVDL 373

Query: 245 YIRFGRLEEAQNLFDTVPVR 264
             R G+L EA +L   +P +
Sbjct: 374 LGRGGKLVEAVDLIKKMPFK 393



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 61/201 (30%), Positives = 115/201 (57%), Gaps = 14/201 (6%)

Query: 7   PKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFE 66
           P   VV  T+ IT + K G I+ A+  F+ MP +N+V++NAM++G+++N +     +LF+
Sbjct: 157 PVRSVVAWTAMITGFMKFGKIELAEKYFEEMPMKNLVTWNAMIAGYIENCQAENGLKLFK 216

Query: 67  EMPER----NVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWN-----SMVVGLIRN 117
            M E     N  S ++++ G ++   +   +++  ++  ++ VSWN     S++    + 
Sbjct: 217 RMVESGFRPNPSSLSSVLLGCSNLSALKLGKQV-HQLICKSPVSWNITAGTSLLSMYCKC 275

Query: 118 GELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNV----VTWTSMI 173
           G+L +A K+F  MP K+V++WNAMI+GY +     +A+ LF++M +  +    +T+ +++
Sbjct: 276 GDLEDAWKLFLVMPQKDVVTWNAMISGYAQHGAGEKALYLFDKMRDEGMKPDWITFVAVL 335

Query: 174 SGYCRAGEVEEGYCLFRRMPR 194
           S    AG V+ G   F  M R
Sbjct: 336 SACNHAGFVDLGIEYFNSMVR 356



 Score = 47.8 bits (112), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 42/173 (24%), Positives = 85/173 (49%), Gaps = 16/173 (9%)

Query: 365 SDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESM 424
           S++I  N +I+ + + G +++A  +F +M  +  V+WNSM+ G+S+       +KV   +
Sbjct: 3   SNVISSNRVITNHIRSGDLNSALRVFESMTVKTTVTWNSMLAGYSNR---RGKIKVARQL 59

Query: 425 LESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGK 484
            +    P+  ++  I+ AC           LF   FD   ++     + +MI+   + G 
Sbjct: 60  FDRIPEPDIFSY-NIMLACYLHNADVESARLF---FDQMPVKDTAS-WNTMISGFSQNGM 114

Query: 485 IKEAEEFVLRLPFEPDHRIWGALLGACGFCE-GNAEIAEHAAKRLLELDPLNA 536
           + +A E  L +P   +   W A++   G+ E G+ ++    AK+L E+ P+ +
Sbjct: 115 MDQARELFLVMPVR-NSVSWNAMIS--GYVESGDLDL----AKQLFEVAPVRS 160


>gi|356545843|ref|XP_003541343.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Glycine max]
          Length = 747

 Score =  350 bits (897), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 195/587 (33%), Positives = 329/587 (56%), Gaps = 11/587 (1%)

Query: 14  LTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNV 73
           L + ++ Y+K   I  A+ +F  MPQRN+ S+N +LS + +   L E  R+F  MP R++
Sbjct: 47  LNNLVSAYAKFDRITYARRVFDQMPQRNLYSWNTLLSSYSKLACLPEMERVFHAMPTRDM 106

Query: 74  VSWTAMICGLADAGRVCEARKLFEEMPER-----NVVSWNSMVVGLIRNGELNEARKVFN 128
           VSW ++I   A  G + ++ K +  M        N ++ ++M++   + G ++   +V  
Sbjct: 107 VSWNSLISAYAGRGFLLQSVKAYNLMLYNGPFNLNRIALSTMLILASKQGCVHLGLQVHG 166

Query: 129 SMPIKNVISW----NAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEE 184
            +      S+    + ++  Y +  ++  A   F+EM E+NVV + ++I+G  R   +E+
Sbjct: 167 HVVKFGFQSYVFVGSPLVDMYSKTGLVFCARQAFDEMPEKNVVMYNTLIAGLMRCSRIED 226

Query: 185 GYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMING 244
              LF  M  K+ +SWTAMI GF  NG  +E++ LF EM+      +     S  +   G
Sbjct: 227 SRQLFYDMQEKDSISWTAMIAGFTQNGLDREAIDLFREMRLENLEMDQYTFGSVLTACGG 286

Query: 245 YIRFGRLEEAQNLFDTVPVRDEI-SWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAM 303
            +     ++          +D I   ++++D Y     + +A  +F  M  ++ V+WTAM
Sbjct: 287 VMALQEGKQVHAYIIRTDYQDNIFVGSALVDMYCKCKSIKSAETVFRKMNCKNVVSWTAM 346

Query: 304 ISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTES 363
           + G  QN    EA  +F +M+ +G+ P + T   +  +    A+++ G Q HC  + +  
Sbjct: 347 LVGYGQNGYSEEAVKIFCDMQNNGIEPDDFTLGSVISSCANLASLEEGAQFHCRALVSGL 406

Query: 364 ESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFES 423
            S + + N L+++Y KCG I++++ +FS M   D VSW ++V G++  G ANETL++FES
Sbjct: 407 ISFITVSNALVTLYGKCGSIEDSHRLFSEMSYVDEVSWTALVSGYAQFGKANETLRLFES 466

Query: 424 MLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAG 483
           ML  G  P+ VTF+G+LSACS AGLV +G ++F +M   ++I P  +HY  MI+L  RAG
Sbjct: 467 MLAHGFKPDKVTFIGVLSACSRAGLVQKGNQIFESMIKEHRIIPIEDHYTCMIDLFSRAG 526

Query: 484 KIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLC 543
           +++EA +F+ ++PF PD   W +LL +C F   N EI + AA+ LL+L+P N  ++++L 
Sbjct: 527 RLEEARKFINKMPFSPDAIGWASLLSSCRF-HRNMEIGKWAAESLLKLEPHNTASYILLS 585

Query: 544 NIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDK 590
           +IYAA G+  E   LR  M  KG+RK PGCSW+     + +F + D+
Sbjct: 586 SIYAAKGKWEEVANLRKGMRDKGLRKEPGCSWIKYKNQVHIFSADDQ 632



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 87/355 (24%), Positives = 159/355 (44%), Gaps = 60/355 (16%)

Query: 7   PKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFE 66
           P+  VV   + I    +   I++++ LF  M +++ +S+ AM++GF QNG   EA  LF 
Sbjct: 204 PEKNVVMYNTLIAGLMRCSRIEDSRQLFYDMQEKDSISWTAMIAGFTQNGLDREAIDLFR 263

Query: 67  EMPERNV----VSWTAMICGLADAGRVCEARK----LFEEMPERNVVSWNSMVVGLIRNG 118
           EM   N+     ++ +++        + E ++    +     + N+   +++V    +  
Sbjct: 264 EMRLENLEMDQYTFGSVLTACGGVMALQEGKQVHAYIIRTDYQDNIFVGSALVDMYCKCK 323

Query: 119 ELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEME----ERNVVTWTSMIS 174
            +  A  VF  M  KNV+SW AM+ GY +     EA+ +F +M+    E +  T  S+IS
Sbjct: 324 SIKSAETVFRKMNCKNVVSWTAMLVGYGQNGYSEEAVKIFCDMQNNGIEPDDFTLGSVIS 383

Query: 175 G-------------YCRA----------------------GEVEEGYCLFRRMPRKNVVS 199
                         +CRA                      G +E+ + LF  M   + VS
Sbjct: 384 SCANLASLEEGAQFHCRALVSGLISFITVSNALVTLYGKCGSIEDSHRLFSEMSYVDEVS 443

Query: 200 WTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFD 259
           WTA++ G+A  G   E+L LF  M     +G   +  +   +++   R G +++   +F+
Sbjct: 444 WTALVSGYAQFGKANETLRLFESMLA---HGFKPDKVTFIGVLSACSRAGLVQKGNQIFE 500

Query: 260 T-------VPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMP-DRDAVAWTAMISG 306
           +       +P+ D   +T MID +   G++  A    + MP   DA+ W +++S 
Sbjct: 501 SMIKEHRIIPIEDH--YTCMIDLFSRAGRLEEARKFINKMPFSPDAIGWASLLSS 553



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 57/201 (28%), Positives = 98/201 (48%), Gaps = 24/201 (11%)

Query: 6   HPKSLVVHLTSSITK-------YSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRL 58
           H ++LV  L S IT        Y K G I+++  LF  M   + VS+ A++SG+ Q G+ 
Sbjct: 398 HCRALVSGLISFITVSNALVTLYGKCGSIEDSHRLFSEMSYVDEVSWTALVSGYAQFGKA 457

Query: 59  SEARRLFEEM------PERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVV-----SW 107
           +E  RLFE M      P++  V++  ++   + AG V +  ++FE M + + +      +
Sbjct: 458 NETLRLFESMLAHGFKPDK--VTFIGVLSACSRAGLVQKGNQIFESMIKEHRIIPIEDHY 515

Query: 108 NSMVVGLIRNGELNEARKVFNSMPIK-NVISWNAMIAG--YVECCMMGE-AIVLFEEMEE 163
             M+    R G L EARK  N MP   + I W ++++   +     +G+ A     ++E 
Sbjct: 516 TCMIDLFSRAGRLEEARKFINKMPFSPDAIGWASLLSSCRFHRNMEIGKWAAESLLKLEP 575

Query: 164 RNVVTWTSMISGYCRAGEVEE 184
            N  ++  + S Y   G+ EE
Sbjct: 576 HNTASYILLSSIYAAKGKWEE 596



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 31/109 (28%), Positives = 56/109 (51%), Gaps = 4/109 (3%)

Query: 352 RQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHH 411
           ++IHC ++K     ++ L N L+S YAK   I  A  +F  M  R+L SWN+++  +S  
Sbjct: 29  KKIHCHIIKAFRNPEIFLLNNLVSAYAKFDRITYARRVFDQMPQRNLYSWNTLLSSYSKL 88

Query: 412 GLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMF 460
               E  +VF +M       + V++  ++SA +  G + +  + +N M 
Sbjct: 89  ACLPEMERVFHAM----PTRDMVSWNSLISAYAGRGFLLQSVKAYNLML 133


>gi|359488555|ref|XP_003633777.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like, partial [Vitis vinifera]
          Length = 825

 Score =  349 bits (896), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 210/662 (31%), Positives = 339/662 (51%), Gaps = 83/662 (12%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWT 77
           +  + K G + +A+ LF+ MP +N VS N M+SG++++G L EAR+LF+ M ER  V+WT
Sbjct: 59  VGNFLKNGELSQARQLFEKMPHKNTVSTNMMISGYVKSGNLGEARKLFDGMVERTAVTWT 118

Query: 78  AMICGLADAGRVCEARKLFEEM----PERNVVSW-------------------------- 107
            +I G +   +  EA +LF +M     E + V++                          
Sbjct: 119 ILIGGYSQLNQFKEAFELFVQMQRCGTEPDYVTFVTLLSGCNGHEMGNQITQVQTQIIKL 178

Query: 108 ---------NSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLF 158
                    N++V    ++  L+ A ++F  MP  + +S+NAMI GY +  +  +A+ LF
Sbjct: 179 GYDSRLIVGNTLVDSYCKSNRLDLACQLFKEMPEIDSVSYNAMITGYSKDGLDEKAVNLF 238

Query: 159 EEMEER---------------------------------------NVVTWTSMISGYCRA 179
            EM+                                         NV    +++  Y + 
Sbjct: 239 VEMQNSGLKPTEFTFAAVLCANIGLDDIVLGQQIHSFVIKTNFVWNVFVSNALLDFYSKH 298

Query: 180 GEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCN 239
             V +   LF  MP ++ VS+  +I G+AW+G HK +  LF E++    +       +  
Sbjct: 299 DSVIDARKLFDEMPEQDGVSYNVIISGYAWDGKHKYAFDLFRELQFTAFDRKQFPFATML 358

Query: 240 SMINGYI--RFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDA 297
           S+ +  +    GR   AQ +  T    + +   S++D Y   G+   A  +F N+  R A
Sbjct: 359 SIASNTLDWEMGRQIHAQTIVTTAD-SEILVGNSLVDMYAKCGKFEEAEMIFTNLTHRSA 417

Query: 298 VAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCV 357
           V WTAMIS  VQ   + E   LF +MR   V    ATF+ L  A+ + A++ LG+Q+H  
Sbjct: 418 VPWTAMISAYVQKGFYEEGLQLFNKMRQASVIADQATFASLLRASASIASLSLGKQLHSF 477

Query: 358 LMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANET 417
           ++K+   S++   + L+ +YAKCG I +A   F  M  R++VSWN+M+  ++ +G A  T
Sbjct: 478 IIKSGFMSNVFSGSALLDVYAKCGSIKDAVQTFQEMPDRNIVSWNAMISAYAQNGEAEAT 537

Query: 418 LKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMIN 477
           LK F+ M+ SG  P+SV+FLG+LSACSH+GLV  G   FN+M  +YK+ P  EHY S+++
Sbjct: 538 LKSFKEMVLSGLQPDSVSFLGVLSACSHSGLVEEGLWHFNSMTQIYKLDPRREHYASVVD 597

Query: 478 LLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPL-NA 536
           +L R+G+  EAE+ +  +P +PD  +W ++L AC     N E+A  AA +L  ++ L +A
Sbjct: 598 MLCRSGRFNEAEKLMAEMPIDPDEIMWSSVLNACRI-HKNQELARRAADQLFNMEELRDA 656

Query: 537 PAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVA 596
             +V + NIYAA+G+     K+   M  +GV+K+P  SW+       MF + D+   Q+ 
Sbjct: 657 APYVNMSNIYAAAGQWENVSKVHKAMRDRGVKKLPAYSWVEIKHETHMFSANDRCHPQIE 716

Query: 597 EI 598
           EI
Sbjct: 717 EI 718



 Score =  162 bits (411), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 124/483 (25%), Positives = 213/483 (44%), Gaps = 91/483 (18%)

Query: 108 NSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVV 167
           N  V   ++NGEL++AR++F  MP KN +S N MI+GYV+   +GEA  LF+ M ER  V
Sbjct: 56  NFRVGNFLKNGELSQARQLFEKMPHKNTVSTNMMISGYVKSGNLGEARKLFDGMVERTAV 115

Query: 168 TWTSMISGYCRAGEVEEGYCLFRRMPR----KNVVSWTAMIGGFAWNGFHKESLLLFIEM 223
           TWT +I GY +  + +E + LF +M R     + V++  ++ G   NG    + +  ++ 
Sbjct: 116 TWTILIGGYSQLNQFKEAFELFVQMQRCGTEPDYVTFVTLLSG--CNGHEMGNQITQVQT 173

Query: 224 KGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVS 283
           + I   G +  +   N++++ Y +  RL+ A  LF  +P  D +S+ +MI GY   G   
Sbjct: 174 Q-IIKLGYDSRLIVGNTLVDSYCKSNRLDLACQLFKEMPEIDSVSYNAMITGYSKDGLDE 232

Query: 284 NAYYLF----------------------------------HNMPDRDAVAWTAMISGLV- 308
            A  LF                                  H+   +    W   +S  + 
Sbjct: 233 KAVNLFVEMQNSGLKPTEFTFAAVLCANIGLDDIVLGQQIHSFVIKTNFVWNVFVSNALL 292

Query: 309 ----QNELFVEATYLFMEMRAHGVPPLNATFS---------------------------- 336
               +++  ++A  LF EM        N   S                            
Sbjct: 293 DFYSKHDSVIDARKLFDEMPEQDGVSYNVIISGYAWDGKHKYAFDLFRELQFTAFDRKQF 352

Query: 337 ---VLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNM 393
               +   A  T + ++GRQIH   + T ++S++++ N L+ MYAKCG  + A  IF+N+
Sbjct: 353 PFATMLSIASNTLDWEMGRQIHAQTIVTTADSEILVGNSLVDMYAKCGKFEEAEMIFTNL 412

Query: 394 VSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGW 453
             R  V W +M+  +   G   E L++F  M ++    +  TF  +L A +    +S G 
Sbjct: 413 THRSAVPWTAMISAYVQKGFYEEGLQLFNKMRQASVIADQATFASLLRASASIASLSLGK 472

Query: 454 ELFNAMFDVYKIQPGPEHYV----SMINLLGRAGKIKEAEEFVLRLPFEPDHRI--WGAL 507
           +L +     + I+ G    V    +++++  + G IK+A +    +   PD  I  W A+
Sbjct: 473 QLHS-----FIIKSGFMSNVFSGSALLDVYAKCGSIKDAVQTFQEM---PDRNIVSWNAM 524

Query: 508 LGA 510
           + A
Sbjct: 525 ISA 527



 Score =  122 bits (305), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 71/223 (31%), Positives = 110/223 (49%), Gaps = 2/223 (0%)

Query: 226 ICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNA 285
           I   G + +    N  +  +++ G L +A+ LF+ +P ++ +S   MI GY+  G +  A
Sbjct: 43  IVKTGFDPDTSRSNFRVGNFLKNGELSQARQLFEKMPHKNTVSTNMMISGYVKSGNLGEA 102

Query: 286 YYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGAT 345
             LF  M +R AV WT +I G  Q   F EA  LF++M+  G  P   TF  L       
Sbjct: 103 RKLFDGMVERTAVTWTILIGGYSQLNQFKEAFELFVQMQRCGTEPDYVTFVTLLSGCNGH 162

Query: 346 ANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMV 405
              +   Q+   ++K   +S LI+ N L+  Y K   +D A  +F  M   D VS+N+M+
Sbjct: 163 EMGNQITQVQTQIIKLGYDSRLIVGNTLVDSYCKSNRLDLACQLFKEMPEIDSVSYNAMI 222

Query: 406 MGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGL 448
            G+S  GL  + + +F  M  SG  P   TF  +L  C++ GL
Sbjct: 223 TGYSKDGLDEKAVNLFVEMQNSGLKPTEFTFAAVL--CANIGL 263



 Score = 45.1 bits (105), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 43/195 (22%), Positives = 86/195 (44%), Gaps = 17/195 (8%)

Query: 354 IHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGL 413
           I   ++KT  + D    N  +  + K G +  A  +F  M  ++ VS N M+ G+   G 
Sbjct: 39  IDARIVKTGFDPDTSRSNFRVGNFLKNGELSQARQLFEKMPHKNTVSTNMMISGYVKSGN 98

Query: 414 ANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYV 473
             E  K+F+ M+E      +VT+  ++   S        +ELF  M    +    P+ YV
Sbjct: 99  LGEARKLFDGMVER----TAVTWTILIGGYSQLNQFKEAFELFVQM---QRCGTEPD-YV 150

Query: 474 SMINLLG------RAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNA-EIAEHAAK 526
           + + LL          +I + +  +++L ++    +   L+ +  +C+ N  ++A    K
Sbjct: 151 TFVTLLSGCNGHEMGNQITQVQTQIIKLGYDSRLIVGNTLVDS--YCKSNRLDLACQLFK 208

Query: 527 RLLELDPLNAPAHVV 541
            + E+D ++  A + 
Sbjct: 209 EMPEIDSVSYNAMIT 223


>gi|125545880|gb|EAY92019.1| hypothetical protein OsI_13712 [Oryza sativa Indica Group]
          Length = 804

 Score =  349 bits (896), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 211/617 (34%), Positives = 328/617 (53%), Gaps = 49/617 (7%)

Query: 25  GFIDEAKALFQLMP--QRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICG 82
           G + +A+ LF  +P  +RNV ++N++LS F ++GRL++AR +F EMPER+ VSWT M+ G
Sbjct: 79  GGLRDARRLFDEIPLARRNVFTWNSLLSMFAKSGRLADARGVFAEMPERDAVSWTVMVVG 138

Query: 83  LADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEA----RKVFNSMPIK----- 133
           L  AGR  EA K   +M           +  ++ +  + +A    RKV +S  +K     
Sbjct: 139 LNRAGRFGEAIKTLLDMTADGFTPTQFTLTNVLSSCAVTQAGAVGRKV-HSFVVKLGLGS 197

Query: 134 NVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMP 193
            V   N+++  Y +C     A  +FE M  R+V +W +M+S     G ++    LF  MP
Sbjct: 198 CVPVANSVLNMYGKCGDAETASTVFERMPVRSVSSWNAMVSLNTHLGRMDLAESLFESMP 257

Query: 194 RKNVVSWTAMIGGFAWNGFHKESLLLFIEM----------------KGICDNGNNC---- 233
            +++VSW AMI G+  NG   ++L LF  M                   C N  N     
Sbjct: 258 GRSIVSWNAMIAGYNQNGLDAKALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRIGK 317

Query: 234 -------------NVQSCNSMINGYIRFGRLEEAQNLFDTVPVRD--EISWTSMIDGYLS 278
                        N Q  N++I+ Y + G +E A+ + D     D   IS+T++++GY+ 
Sbjct: 318 QVHAYILRTEMAYNSQVTNALISTYAKSGSVENARRIMDQSMETDLNVISFTALLEGYVK 377

Query: 279 VGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVL 338
           +G + +A  +F  M +RD VAWTAMI G  QN    EA  LF  M   G  P + T + +
Sbjct: 378 IGDMESAREMFGVMNNRDVVAWTAMIVGYEQNGRNDEAIDLFRSMITCGPEPNSYTLAAV 437

Query: 339 FGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSR-D 397
                + A +D G+QIHC  +++  E    + N +I+MYA+ G    A  +F  +  R +
Sbjct: 438 LSVCASLACLDYGKQIHCRAIRSLLERSSSVSNAIITMYARSGSFPWARRMFDQVCWRKE 497

Query: 398 LVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFN 457
            ++W SM++  + HG   E + +FE ML +G  P+ +T++G+LSACSHAG V+ G   ++
Sbjct: 498 TITWTSMIVALAQHGQGEEAVGLFEEMLRAGVEPDRITYVGVLSACSHAGFVNEGKRYYD 557

Query: 458 AMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGN 517
            + + ++I P   HY  M++LL RAG   EA+EF+ R+P EPD   WG+LL AC     N
Sbjct: 558 QIKNEHQIAPEMSHYACMVDLLARAGLFSEAQEFIRRMPVEPDAIAWGSLLSACRV-HKN 616

Query: 518 AEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLM 577
           AE+AE AA++LL +DP N+ A+  + N+Y+A GR  +  ++      K VRK  G SW  
Sbjct: 617 AELAELAAEKLLSIDPNNSGAYSAIANVYSACGRWSDAARIWKARKEKAVRKETGFSWTH 676

Query: 578 RNGGIQMFLSGDKIPAQ 594
               I +F + D +  Q
Sbjct: 677 IRSKIHVFGADDVVHPQ 693



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 127/491 (25%), Positives = 208/491 (42%), Gaps = 87/491 (17%)

Query: 16  SSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVS 75
           S +  Y K G  + A  +F+ MP R+V S+NAM+S     GR+  A  LFE MP R++VS
Sbjct: 204 SVLNMYGKCGDAETASTVFERMPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPGRSIVS 263

Query: 76  WTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVV----------GLIRNGELNEARK 125
           W AMI G    G   +A KLF  M   + ++ +   +          G +R G+   A  
Sbjct: 264 WNAMIAGYNQNGLDAKALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYI 323

Query: 126 VFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEER--NVVTWTSMISGYCRAGEVE 183
           +   M   + ++ NA+I+ Y +   +  A  + ++  E   NV+++T+++ GY + G++E
Sbjct: 324 LRTEMAYNSQVT-NALISTYAKSGSVENARRIMDQSMETDLNVISFTALLEGYVKIGDME 382

Query: 184 EGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEM---------------KGIC- 227
               +F  M  ++VV+WTAMI G+  NG + E++ LF  M                 +C 
Sbjct: 383 SAREMFGVMNNRDVVAWTAMIVGYEQNGRNDEAIDLFRSMITCGPEPNSYTLAAVLSVCA 442

Query: 228 -----DNGNNCNVQS-----------CNSMINGYIRFGRLEEAQNLFDTVPVRDE-ISWT 270
                D G   + ++            N++I  Y R G    A+ +FD V  R E I+WT
Sbjct: 443 SLACLDYGKQIHCRAIRSLLERSSSVSNAIITMYARSGSFPWARRMFDQVCWRKETITWT 502

Query: 271 SMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPP 330
           SM                               I  L Q+    EA  LF EM   GV P
Sbjct: 503 SM-------------------------------IVALAQHGQGEEAVGLFEEMLRAGVEP 531

Query: 331 LNATFSVLFGAAGATANIDLGRQIHCVLMKTESE--SDLILENCLISMYAKCGVIDNAYN 388
              T+  +  A      ++ G++ +  + K E +   ++    C++ + A+ G+   A  
Sbjct: 532 DRITYVGVLSACSHAGFVNEGKRYYDQI-KNEHQIAPEMSHYACMVDLLARAGLFSEAQE 590

Query: 389 IFSNM-VSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNS----VTFLGILSAC 443
               M V  D ++W S++     H  A       E +L     PN+         + SAC
Sbjct: 591 FIRRMPVEPDAIAWGSLLSACRVHKNAELAELAAEKLL--SIDPNNSGAYSAIANVYSAC 648

Query: 444 SHAGLVSRGWE 454
                 +R W+
Sbjct: 649 GRWSDAARIWK 659



 Score =  125 bits (314), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 86/322 (26%), Positives = 158/322 (49%), Gaps = 15/322 (4%)

Query: 238 CNSMINGYIRF----GRLEEAQNLFDTVPV--RDEISWTSMIDGYLSVGQVSNAYYLFHN 291
           CN++++ Y       G L +A+ LFD +P+  R+  +W S++  +   G++++A  +F  
Sbjct: 64  CNNLLSYYGETAGGAGGLRDARRLFDEIPLARRNVFTWNSLLSMFAKSGRLADARGVFAE 123

Query: 292 MPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLG 351
           MP+RDAV+WT M+ GL +   F EA    ++M A G  P   T + +  +   T    +G
Sbjct: 124 MPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMTADGFTPTQFTLTNVLSSCAVTQAGAVG 183

Query: 352 RQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHH 411
           R++H  ++K    S + + N +++MY KCG  + A  +F  M  R + SWN+MV   +H 
Sbjct: 184 RKVHSFVVKLGLGSCVPVANSVLNMYGKCGDAETASTVFERMPVRSVSSWNAMVSLNTHL 243

Query: 412 GLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEH 471
           G     + + ES+ ES    + V++  +++  +  GL ++  +LF+ M     + P    
Sbjct: 244 G----RMDLAESLFESMPGRSIVSWNAMIAGYNQNGLDAKALKLFSRMLHESSMAPDEFT 299

Query: 472 YVSMINLLGRAGKI---KEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRL 528
             S+++     G +   K+   ++LR     + ++  AL+       G+ E A     + 
Sbjct: 300 ITSVLSACANLGNVRIGKQVHAYILRTEMAYNSQVTNALISTYAK-SGSVENARRIMDQS 358

Query: 529 LELDPLNAPAHVVLCNIYAASG 550
           +E D LN  +   L   Y   G
Sbjct: 359 METD-LNVISFTALLEGYVKIG 379


>gi|255587181|ref|XP_002534168.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223525755|gb|EEF28217.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 513

 Score =  349 bits (895), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 167/433 (38%), Positives = 266/433 (61%), Gaps = 7/433 (1%)

Query: 7   PKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFE 66
           P+   V   + I+ Y   G  D A+ +F  MP+R++ ++N MLSG+++N  L++AR LFE
Sbjct: 84  PRRSTVTYNAMISGYLSNGRFDLAREMFDKMPERDLFTWNVMLSGYVRNKNLTDARGLFE 143

Query: 67  EMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKV 126
            MP R+VVSW AM+ G A  G + EAR++F+EMP +N +SWN ++   ++NG + +AR++
Sbjct: 144 RMPRRDVVSWNAMLSGYAQNGFIAEAREIFDEMPVKNSISWNGLLAAYVQNGRIEDARRL 203

Query: 127 FNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGY 186
           F S    +V+SWN ++ G+V+   + +A  +F+ +  R+ V+W +MI+GY + GE+EE  
Sbjct: 204 FESKMDWDVVSWNCLMGGFVKKKRLVDARRVFDRIPVRDEVSWNTMITGYAQNGELEEAR 263

Query: 187 CLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYI 246
            LF   P ++V +WTAM+ G+  NG   E+  +F +M          N  S N+MI GY+
Sbjct: 264 KLFEESPTQDVFTWTAMVSGYVQNGMVDEARSIFDKMP-------EKNSVSWNAMIAGYV 316

Query: 247 RFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISG 306
           +  R++ A+ LF+ +P R+  SW +MI GY   G V +A  LF  MP RD+++W+AMI+G
Sbjct: 317 QCKRMDMAKELFEAMPFRNISSWNTMITGYAQSGNVPHARNLFDRMPQRDSISWSAMIAG 376

Query: 307 LVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESD 366
            VQN    EA +L++EM+  G     ++F+ +  A    A +DLG+Q H  L+K   ++ 
Sbjct: 377 YVQNGCNEEAVHLYVEMKRDGESLNRSSFTSVLTACADIAALDLGKQFHGWLVKVGYQTG 436

Query: 367 LILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLE 426
             + N L++MY KCG ID A + F  +  +DL+SWN+M+ G++ HG   E L VFESM  
Sbjct: 437 CYVGNALLAMYCKCGSIDEADDAFHEITDKDLISWNTMIYGYARHGFGKEALIVFESMKT 496

Query: 427 SGTHPNSVTFLGI 439
            G  P+  T + +
Sbjct: 497 VGVKPDEATMVTV 509



 Score =  237 bits (605), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 128/435 (29%), Positives = 235/435 (54%), Gaps = 18/435 (4%)

Query: 57  RLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIR 116
           +  +++   E+  + ++V+W   I      G+   A ++F  MP R+ V++N+M+ G + 
Sbjct: 41  KFKQSKNESEKTTDSDIVNWNMAITTHMRNGQCHSALQVFNTMPRRSTVTYNAMISGYLS 100

Query: 117 NGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGY 176
           NG  + AR++F+ MP +++ +WN M++GYV    + +A  LFE M  R+VV+W +M+SGY
Sbjct: 101 NGRFDLAREMFDKMPERDLFTWNVMLSGYVRNKNLTDARGLFERMPRRDVVSWNAMLSGY 160

Query: 177 CRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQ 236
            + G + E   +F  MP KN +SW  ++  +  NG  +++  LF       ++  + +V 
Sbjct: 161 AQNGFIAEAREIFDEMPVKNSISWNGLLAAYVQNGRIEDARRLF-------ESKMDWDVV 213

Query: 237 SCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRD 296
           S N ++ G+++  RL +A+ +FD +PVRDE+SW +MI GY   G++  A  LF   P +D
Sbjct: 214 SWNCLMGGFVKKKRLVDARRVFDRIPVRDEVSWNTMITGYAQNGELEEARKLFEESPTQD 273

Query: 297 AVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNA-TFSVLFGAAGATANIDLGRQIH 355
              WTAM+SG VQN +  EA  +F +M     P  N+ +++ +         +D+ ++  
Sbjct: 274 VFTWTAMVSGYVQNGMVDEARSIFDKM-----PEKNSVSWNAMIAGYVQCKRMDMAKE-- 326

Query: 356 CVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLAN 415
             L +     ++   N +I+ YA+ G + +A N+F  M  RD +SW++M+ G+  +G   
Sbjct: 327 --LFEAMPFRNISSWNTMITGYAQSGNVPHARNLFDRMPQRDSISWSAMIAGYVQNGCNE 384

Query: 416 ETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSM 475
           E + ++  M   G   N  +F  +L+AC+    +  G +    +  V   Q G     ++
Sbjct: 385 EAVHLYVEMKRDGESLNRSSFTSVLTACADIAALDLGKQFHGWLVKV-GYQTGCYVGNAL 443

Query: 476 INLLGRAGKIKEAEE 490
           + +  + G I EA++
Sbjct: 444 LAMYCKCGSIDEADD 458



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 94/381 (24%), Positives = 168/381 (44%), Gaps = 47/381 (12%)

Query: 214 KESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMI 273
           KE    F + K   +   + ++ + N  I  ++R G+   A  +F+T+P R  +++ +MI
Sbjct: 36  KELTQKFKQSKNESEKTTDSDIVNWNMAITTHMRNGQCHSALQVFNTMPRRSTVTYNAMI 95

Query: 274 DGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNA 333
            GYLS G+   A  +F  MP+RD   W  M+SG V+N+   +A  LF  M    V   NA
Sbjct: 96  SGYLSNGRFDLAREMFDKMPERDLFTWNVMLSGYVRNKNLTDARGLFERMPRRDVVSWNA 155

Query: 334 TFS---------------------------VLFGAAGATANIDLGRQIHCVLMKTESESD 366
             S                            L  A      I+  R+    L +++ + D
Sbjct: 156 MLSGYAQNGFIAEAREIFDEMPVKNSISWNGLLAAYVQNGRIEDARR----LFESKMDWD 211

Query: 367 LILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLE 426
           ++  NCL+  + K   + +A  +F  +  RD VSWN+M+ G++ +G   E  K+FE   E
Sbjct: 212 VVSWNCLMGGFVKKKRLVDARRVFDRIPVRDEVSWNTMITGYAQNGELEEARKLFE---E 268

Query: 427 SGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIK 486
           S T  +  T+  ++S     G+V     +F+ M +   +      + +MI    +  ++ 
Sbjct: 269 SPTQ-DVFTWTAMVSGYVQNGMVDEARSIFDKMPEKNSVS-----WNAMIAGYVQCKRMD 322

Query: 487 EAEEFVLRLPFEPDHRIWGALLGACGFCE-GNAEIAEHAAKRLLELDPLNAPAHVVLCNI 545
            A+E    +PF  +   W  ++   G+ + GN   A +   R+ + D ++  A +     
Sbjct: 323 MAKELFEAMPFR-NISSWNTMI--TGYAQSGNVPHARNLFDRMPQRDSISWSAMIAG--- 376

Query: 546 YAASGRHVEEHKLRMDMGLKG 566
           Y  +G + E   L ++M   G
Sbjct: 377 YVQNGCNEEAVHLYVEMKRDG 397


>gi|297831842|ref|XP_002883803.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297329643|gb|EFH60062.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 697

 Score =  349 bits (895), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 197/602 (32%), Positives = 328/602 (54%), Gaps = 27/602 (4%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWT 77
           I  Y+K G +++ + LF  MPQRNV ++N++++G  + G L EA  LF  MPER+  +W 
Sbjct: 62  IDAYAKCGSLEDGRQLFDKMPQRNVFTWNSVVTGLTKLGFLDEADSLFRSMPERDQCTWN 121

Query: 78  AMICGLADAGRVCEARKLFEEM-PERNVVSWNSMVVGLIRNGELNEARK-------VFNS 129
           +M+ G A   R  EA   F  M  E  V++  +   GL     LN+  +       +  S
Sbjct: 122 SMVSGFAQHDRCEEALYYFAMMHKEGFVLNEYTFASGLSACSGLNDMNRGVQIHSLIAKS 181

Query: 130 MPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLF 189
             + +V   +A++  Y +C  + +A  +F+EM +RNVV+W S+I+ Y + G   E   +F
Sbjct: 182 PCLSDVYIGSALVDMYSKCGNVNDAQQVFDEMGDRNVVSWNSLITCYEQNGPAVEALKVF 241

Query: 190 RRMPRK-------NVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMI 242
           + M           + S  +     +     +E     ++M  + +     ++   N+ +
Sbjct: 242 QVMLESWVEPDEVTLASVISACASLSAIKVGQEVHARVVKMDKLRN-----DIILSNAFV 296

Query: 243 NGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTA 302
           + Y +  R++EA+ +FD++P+R+ I+ TSM+ GY        A  +F  M +R+ V+W A
Sbjct: 297 DMYAKCSRIKEARFIFDSMPIRNVIAETSMVSGYAMAASTKAARLMFTKMAERNVVSWNA 356

Query: 303 MISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMK-- 360
           +I+G  QN    EA  LF  ++   V P + TF+ +  A    A++ LG Q H  ++K  
Sbjct: 357 LIAGYTQNGENEEALSLFCLLKRESVCPTHYTFANILKACADLADLHLGMQAHVHVLKHG 416

Query: 361 ----TESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANE 416
               +  E D+ + N LI MY KCG ++  Y +F  M+ RD VSWN+M++GF+ +G  NE
Sbjct: 417 FKFQSGEEDDIFVGNSLIDMYVKCGCVEEGYLVFRKMMERDCVSWNAMIIGFAQNGYGNE 476

Query: 417 TLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMI 476
            L++F  ML+SG  P+ +T +G+LSAC HAG V  G   F++M   + + P  +HY  M+
Sbjct: 477 ALELFREMLDSGEKPDHITMIGVLSACGHAGFVEEGRHYFSSMTRDFGVAPLRDHYTCMV 536

Query: 477 NLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNA 536
           +LLGRAG ++EA+  +  +P +PD  IWG+LL AC     N  + ++ A++L E++  N+
Sbjct: 537 DLLGRAGFLEEAKSIIEEMPVQPDSVIWGSLLAACKV-HRNITLGKYVAEKLFEVETSNS 595

Query: 537 PAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVA 596
             +V+L N+YA  G+  +   +R  M  +GV K PGCSW+   G   +F+  DK   +  
Sbjct: 596 GPYVLLSNMYAELGKWGDAMNVRKLMRKEGVTKQPGCSWIKIPGHAHVFMVKDKSHPRKK 655

Query: 597 EI 598
           +I
Sbjct: 656 QI 657



 Score =  176 bits (446), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 142/495 (28%), Positives = 214/495 (43%), Gaps = 92/495 (18%)

Query: 7   PKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFE 66
           P+  V    S +T  +K GF+DEA +LF+ MP+R+  ++N+M+SGF Q+ R  EA   F 
Sbjct: 82  PQRNVFTWNSVVTGLTKLGFLDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEALYYFA 141

Query: 67  EMPERNVV-------SWTAMICGLAD--------------------------------AG 87
            M +   V       S  +   GL D                                 G
Sbjct: 142 MMHKEGFVLNEYTFASGLSACSGLNDMNRGVQIHSLIAKSPCLSDVYIGSALVDMYSKCG 201

Query: 88  RVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSM----------------- 130
            V +A+++F+EM +RNVVSWNS++    +NG   EA KVF  M                 
Sbjct: 202 NVNDAQQVFDEMGDRNVVSWNSLITCYEQNGPAVEALKVFQVMLESWVEPDEVTLASVIS 261

Query: 131 ------PIK-----------------NVISWNAMIAGYVECCMMGEAIVLFEEMEERNVV 167
                  IK                 ++I  NA +  Y +C  + EA  +F+ M  RNV+
Sbjct: 262 ACASLSAIKVGQEVHARVVKMDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMPIRNVI 321

Query: 168 TWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMK--G 225
             TSM+SGY  A   +    +F +M  +NVVSW A+I G+  NG ++E+L LF  +K   
Sbjct: 322 AETSMVSGYAMAASTKAARLMFTKMAERNVVSWNALIAGYTQNGENEEALSLFCLLKRES 381

Query: 226 ICDNGNN-CNV-QSCNSMINGYIRFGRLEEAQNL-----FDTVPVRDEISWTSMIDGYLS 278
           +C       N+ ++C  + +  +  G       L     F +    D     S+ID Y+ 
Sbjct: 382 VCPTHYTFANILKACADLAD--LHLGMQAHVHVLKHGFKFQSGEEDDIFVGNSLIDMYVK 439

Query: 279 VGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVL 338
            G V   Y +F  M +RD V+W AMI G  QN    EA  LF EM   G  P + T   +
Sbjct: 440 CGCVEEGYLVFRKMMERDCVSWNAMIIGFAQNGYGNEALELFREMLDSGEKPDHITMIGV 499

Query: 339 FGAAGATANIDLGRQIHCVLMKTESESDLILE-NCLISMYAKCGVIDNAYNIFSNM-VSR 396
             A G    ++ GR     + +    + L     C++ +  + G ++ A +I   M V  
Sbjct: 500 LSACGHAGFVEEGRHYFSSMTRDFGVAPLRDHYTCMVDLLGRAGFLEEAKSIIEEMPVQP 559

Query: 397 DLVSWNSMVMGFSHH 411
           D V W S++     H
Sbjct: 560 DSVIWGSLLAACKVH 574



 Score =  165 bits (418), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 83/258 (32%), Positives = 141/258 (54%)

Query: 239 NSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAV 298
           N +I+ Y + G LE+ + LFD +P R+  +W S++ G   +G +  A  LF +MP+RD  
Sbjct: 59  NRLIDAYAKCGSLEDGRQLFDKMPQRNVFTWNSVVTGLTKLGFLDEADSLFRSMPERDQC 118

Query: 299 AWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVL 358
            W +M+SG  Q++   EA Y F  M   G      TF+    A     +++ G QIH ++
Sbjct: 119 TWNSMVSGFAQHDRCEEALYYFAMMHKEGFVLNEYTFASGLSACSGLNDMNRGVQIHSLI 178

Query: 359 MKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETL 418
            K+   SD+ + + L+ MY+KCG +++A  +F  M  R++VSWNS++  +  +G A E L
Sbjct: 179 AKSPCLSDVYIGSALVDMYSKCGNVNDAQQVFDEMGDRNVVSWNSLITCYEQNGPAVEAL 238

Query: 419 KVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINL 478
           KVF+ MLES   P+ VT   ++SAC+    +  G E+   +  + K++       + +++
Sbjct: 239 KVFQVMLESWVEPDEVTLASVISACASLSAIKVGQEVHARVVKMDKLRNDIILSNAFVDM 298

Query: 479 LGRAGKIKEAEEFVLRLP 496
             +  +IKEA      +P
Sbjct: 299 YAKCSRIKEARFIFDSMP 316



 Score = 62.4 bits (150), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 44/172 (25%), Positives = 78/172 (45%), Gaps = 36/172 (20%)

Query: 352 RQIHCVLMKTESESDLILENCLISMYAKC------------------------------- 380
           R +H  ++K+   +++ ++N LI  YAKC                               
Sbjct: 40  RCVHASVIKSGFSNEVFIQNRLIDAYAKCGSLEDGRQLFDKMPQRNVFTWNSVVTGLTKL 99

Query: 381 GVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGIL 440
           G +D A ++F +M  RD  +WNSMV GF+ H    E L  F  M + G   N  TF   L
Sbjct: 100 GFLDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEALYYFAMMHKEGFVLNEYTFASGL 159

Query: 441 SACSHAGLVSRGWELFNAMFDVYKIQPGPEHYV--SMINLLGRAGKIKEAEE 490
           SACS    ++RG ++ +    + K     + Y+  +++++  + G + +A++
Sbjct: 160 SACSGLNDMNRGVQIHSL---IAKSPCLSDVYIGSALVDMYSKCGNVNDAQQ 208


>gi|302753930|ref|XP_002960389.1| hypothetical protein SELMODRAFT_73601 [Selaginella moellendorffii]
 gi|300171328|gb|EFJ37928.1| hypothetical protein SELMODRAFT_73601 [Selaginella moellendorffii]
          Length = 577

 Score =  348 bits (894), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 192/572 (33%), Positives = 311/572 (54%), Gaps = 33/572 (5%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQ-RNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSW 76
           +T Y+  G   +AK LF  +P  R+ V+++ ++  F++ G L  ARR+F+ +P   VV+ 
Sbjct: 2   LTVYAHNGRPWDAKNLFDRIPGGRDSVAWSCLIGAFVKIGDLEHARRVFDLLPRWTVVTS 61

Query: 77  TAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVI 136
           TA++  LA  G+   AR +F  MPER++V+WN+M+    +NG L  A+ +F  MP +N +
Sbjct: 62  TAILVALAKRGKAENARAMFLAMPERDLVAWNAMITAYAQNGNLQVAQAMFFRMPARNFV 121

Query: 137 SWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKN 196
           SWNA+I G  +      A  +F+ M +R VV+WT+M++ Y ++G +EE   L  +MP  N
Sbjct: 122 SWNAIIDGCAQGQDEALAKKVFDSMPQREVVSWTAMVATYSQSGRLEEAQALLSKMPALN 181

Query: 197 VVSWTAMIGGFA----------------------WNGF---HKESLLLFIEMKGICDNGN 231
           +VSW  MI  FA                      WN     + ++  +F+  +   D   
Sbjct: 182 IVSWNVMIQAFADNLLVEEAKERFDRAPEHDFVSWNAIITAYAQTSQIFLA-RAAFDRMP 240

Query: 232 NCNVQSCNSMINGYIRFGR--LEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLF 289
             +V S  +MI  Y + G+  +++A+ +FD  P R+ +SW  MI GY + G++  +  LF
Sbjct: 241 QRDVVSWATMIQSYAQEGQPSMDQAKEIFDRAPQRNVVSWNVMITGYSASGRIKQSRGLF 300

Query: 290 HNMP---DRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATA 346
             MP   + D V+W A+I+G + N L   A  LF+EM   G  P  A+++    A    A
Sbjct: 301 ERMPMMAEHDLVSWNALIAGHLDNGLDERALQLFLEMDRRGCSPDPASYTSALAACAGLA 360

Query: 347 NIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVM 406
           ++   R IH  L K   E+D  + N L+  Y K G + +A  +F ++ S D+V+WN++  
Sbjct: 361 SLGAARDIHWRLCKAGLETDAFVHNALVDFYGKSGRMADAELVFQSLASVDVVTWNALAA 420

Query: 407 GFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQ 466
           G S  G     + +  ++ + G  P+ +TFL +L+A  HAGLV  G   F AM + Y+I+
Sbjct: 421 GLSRQGSYRLVVDLLWAIKDQGLEPDGITFLALLAAYGHAGLVDHGRRAFAAMVETYRIE 480

Query: 467 PGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAK 526
           PG EHY  ++++LGRA +++EA   V  +P  P    W  +L AC   + N  +A  A +
Sbjct: 481 PGIEHYHCLVDMLGRANRLEEAVAVVSAMPHRPSSVTWTTVLSACVKWK-NLGVASVAFE 539

Query: 527 RLLELDPLNAPAHVVLCNIYAASGRHVEEHKL 558
            LL +DP    A+V++ N+Y ++G   EE KL
Sbjct: 540 SLLGIDPDGPAAYVLMANVYGSAGMAEEEAKL 571



 Score = 79.0 bits (193), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 82/354 (23%), Positives = 146/354 (41%), Gaps = 78/354 (22%)

Query: 241 MINGYIRFGRLEEAQNLFDTVP-VRDEISWTSMIDGYLSV-------------------- 279
           M+  Y   GR  +A+NLFD +P  RD ++W+ +I  ++ +                    
Sbjct: 1   MLTVYAHNGRPWDAKNLFDRIPGGRDSVAWSCLIGAFVKIGDLEHARRVFDLLPRWTVVT 60

Query: 280 -----------GQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGV 328
                      G+  NA  +F  MP+RD VAW AMI+   QN     A  +F  M A   
Sbjct: 61  STAILVALAKRGKAENARAMFLAMPERDLVAWNAMITAYAQNGNLQVAQAMFFRMPARNF 120

Query: 329 PPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYN 388
              NA   ++ G A    +  L +++      +  + +++    +++ Y++ G ++ A  
Sbjct: 121 VSWNA---IIDGCAQGQ-DEALAKKV----FDSMPQREVVSWTAMVATYSQSGRLEEAQA 172

Query: 389 IFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGL 448
           + S M + ++VSWN M+  F+ + L  E  + F+   E     + V++  I++A +    
Sbjct: 173 LLSKMPALNIVSWNVMIQAFADNLLVEEAKERFDRAPEH----DFVSWNAIITAYAQTSQ 228

Query: 449 VSRGWELFNAM--FDVYKI-----------QP-----------GPEHYV----SMINLLG 480
           +      F+ M   DV              QP            P+  V     MI    
Sbjct: 229 IFLARAAFDRMPQRDVVSWATMIQSYAQEGQPSMDQAKEIFDRAPQRNVVSWNVMITGYS 288

Query: 481 RAGKIKEAEEFVLRLPFEPDHRI--WGALLGACGFCEGNAEIAEHAAKRLLELD 532
            +G+IK++     R+P   +H +  W AL+   G  +   +  E A +  LE+D
Sbjct: 289 ASGRIKQSRGLFERMPMMAEHDLVSWNALI--AGHLDNGLD--ERALQLFLEMD 338


>gi|224096022|ref|XP_002310520.1| predicted protein [Populus trichocarpa]
 gi|222853423|gb|EEE90970.1| predicted protein [Populus trichocarpa]
          Length = 710

 Score =  348 bits (893), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 201/599 (33%), Positives = 329/599 (54%), Gaps = 21/599 (3%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWT 77
           I  Y K G++D A+ +F  M +RNV S+N+++S  ++ G + E+  LF  MPE++  SW 
Sbjct: 66  IDVYGKCGYLDYARKVFDRMSERNVFSFNSIISTLMRWGFVDESAWLFSLMPEKDQCSWN 125

Query: 78  AMICGLADAGRVCEARKLFEEMPERNVV----SWNSMVVGLIRNGELNEARKVF----NS 129
           +MI G A   R  EA   F  M   + V    S+ S +    R  +L    ++      S
Sbjct: 126 SMIAGFAQHDRFEEALDWFVRMHRDDFVLNDYSFGSGLSACSRLKDLKLGAQIHGLISKS 185

Query: 130 MPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLF 189
               +V   + +I  Y +C ++G A  +F+ MEE+NVV+W  +I+ Y + G   E    F
Sbjct: 186 KYSLDVFMGSGLIDFYSKCGLVGCARRVFDGMEEKNVVSWNCLITCYEQNGPAIEALEAF 245

Query: 190 RRMP----RKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGY 245
            RM     + + V+  +++   A     KE +   I  + +  +    ++   N++++ Y
Sbjct: 246 GRMTELGFKPDEVTLASVVSACATLAAFKEGVQ--IHARVVKSDKFRNDLILGNALVDMY 303

Query: 246 IRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMIS 305
            + GR+ EA+ +FD +PVR+ +S T+M+ GY     V  A  +F  +  +D V+W A+I+
Sbjct: 304 AKCGRVNEARCVFDRMPVRNAVSETTMVSGYAKSASVKAARSMFATIKQKDIVSWNALIA 363

Query: 306 GLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMK----- 360
           G  QN    EA  LF  ++   V P + TF  L  A+   A+++LGRQ H  ++K     
Sbjct: 364 GYTQNGENEEALGLFRMLKRESVCPTHYTFGNLLNASANLADLELGRQAHSHVVKHGFRF 423

Query: 361 -TESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLK 419
            +  E D+ + N LI MY KCG ++    +F NMV +D VSWN+M++G++ +G   E L+
Sbjct: 424 QSGEEPDIFVGNSLIDMYMKCGSVEEGLRVFENMVEKDHVSWNTMIIGYAQNGYGMEALE 483

Query: 420 VFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLL 479
           +F+ MLESG  P+ VT +G L ACSHAGLV  G   F +M   + + P  +HY  M++LL
Sbjct: 484 LFQKMLESGEKPDHVTMIGTLCACSHAGLVEEGRRYFFSMTKEHGLLPVKDHYTCMVDLL 543

Query: 480 GRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAH 539
           GRAG ++EA++ +  +P +PD  +W +LL AC     N  + ++ A+++ E+DP ++  +
Sbjct: 544 GRAGCLEEAKDLIESMPKQPDAVVWSSLLSACKV-HRNITLGKYVAEKIFEIDPTSSGPY 602

Query: 540 VVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
           V+L N+Y+  GR  +   +R  M  +GV K PGCSW+     + +F+  DK   Q  EI
Sbjct: 603 VLLANMYSELGRWGDAVSVRKLMRRRGVVKQPGCSWIDIQSNVHVFMVKDKRHPQKKEI 661



 Score =  141 bits (356), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 113/417 (27%), Positives = 185/417 (44%), Gaps = 45/417 (10%)

Query: 133 KNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRM 192
           + V   N +I  Y +C  +  A  +F+ M ERNV ++ S+IS   R G V+E   LF  M
Sbjct: 57  EEVFIQNRLIDVYGKCGYLDYARKVFDRMSERNVFSFNSIISTLMRWGFVDESAWLFSLM 116

Query: 193 PRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLE 252
           P K+  SW +MI GFA +   +E+L  F+ M     +    N  S  S ++   R   L+
Sbjct: 117 PEKDQCSWNSMIAGFAQHDRFEEALDWFVRMH---RDDFVLNDYSFGSGLSACSRLKDLK 173

Query: 253 EAQNLFDTVPVR----DEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLV 308
               +   +       D    + +ID Y   G V  A  +F  M +++ V+W  +I+   
Sbjct: 174 LGAQIHGLISKSKYSLDVFMGSGLIDFYSKCGLVGCARRVFDGMEEKNVVSWNCLITCYE 233

Query: 309 QNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTES-ESDL 367
           QN   +EA   F  M   G  P   T + +  A    A    G QIH  ++K++   +DL
Sbjct: 234 QNGPAIEALEAFGRMTELGFKPDEVTLASVVSACATLAAFKEGVQIHARVVKSDKFRNDL 293

Query: 368 ILENCLISMYAKCGVIDNAYNIFSNMVSR------------------------------- 396
           IL N L+ MYAKCG ++ A  +F  M  R                               
Sbjct: 294 ILGNALVDMYAKCGRVNEARCVFDRMPVRNAVSETTMVSGYAKSASVKAARSMFATIKQK 353

Query: 397 DLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELF 456
           D+VSWN+++ G++ +G   E L +F  +      P   TF  +L+A ++   +  G +  
Sbjct: 354 DIVSWNALIAGYTQNGENEEALGLFRMLKRESVCPTHYTFGNLLNASANLADLELGRQAH 413

Query: 457 NAMFDV-YKIQPG--PEHYV--SMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALL 508
           + +    ++ Q G  P+ +V  S+I++  + G ++E    V     E DH  W  ++
Sbjct: 414 SHVVKHGFRFQSGEEPDIFVGNSLIDMYMKCGSVEEGLR-VFENMVEKDHVSWNTMI 469



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 67/262 (25%), Positives = 98/262 (37%), Gaps = 57/262 (21%)

Query: 351 GRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSR-------------- 396
            R +H  L++T    ++ ++N LI +Y KCG +D A  +F  M  R              
Sbjct: 43  ARSVHGRLIQTPFCEEVFIQNRLIDVYGKCGYLDYARKVFDRMSERNVFSFNSIISTLMR 102

Query: 397 -----------------DLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGI 439
                            D  SWNSM+ GF+ H    E L  F  M       N  +F   
Sbjct: 103 WGFVDESAWLFSLMPEKDQCSWNSMIAGFAQHDRFEEALDWFVRMHRDDFVLNDYSFGSG 162

Query: 440 LSACSHAGLVSRGWELFNAM------FDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVL 493
           LSACS    +  G ++   +       DV+ +  G   + S   L+G A ++ +  E   
Sbjct: 163 LSACSRLKDLKLGAQIHGLISKSKYSLDVF-MGSGLIDFYSKCGLVGCARRVFDGME--- 218

Query: 494 RLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLEL----DPLNAPAHVVLCNIYAA- 548
               E +   W  L+  C    G A  A  A  R+ EL    D +   + V  C   AA 
Sbjct: 219 ----EKNVVSWNCLI-TCYEQNGPAIEALEAFGRMTELGFKPDEVTLASVVSACATLAAF 273

Query: 549 ------SGRHVEEHKLRMDMGL 564
                   R V+  K R D+ L
Sbjct: 274 KEGVQIHARVVKSDKFRNDLIL 295


>gi|242032827|ref|XP_002463808.1| hypothetical protein SORBIDRAFT_01g006560 [Sorghum bicolor]
 gi|241917662|gb|EER90806.1| hypothetical protein SORBIDRAFT_01g006560 [Sorghum bicolor]
          Length = 803

 Score =  348 bits (892), Expect = 6e-93,   Method: Compositional matrix adjust.
 Identities = 205/620 (33%), Positives = 326/620 (52%), Gaps = 53/620 (8%)

Query: 24  RGFIDEAKALFQLMP--QRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMIC 81
           RG   EA+ LF  +P  +RN  ++N++LS + ++GRL++AR +F +MPER+ VSWT M+ 
Sbjct: 77  RGCFHEARRLFDDIPYARRNAFTWNSLLSMYAKSGRLADARVVFAQMPERDAVSWTVMVV 136

Query: 82  GLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKV---FNSMPIKNVIS- 137
           GL  AGR  +A K F +M    +     M+  ++ +    EAR +    +S  IK  +S 
Sbjct: 137 GLNRAGRFWDAVKTFLDMVGEGLAPSQFMLTNVLSSCAATEARGIGRKVHSFVIKLGLSS 196

Query: 138 ----WNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMP 193
                N+++  Y +C     A  +FE M+ R+  +W +M+S Y   G ++    +F  M 
Sbjct: 197 CVPVANSVLYMYGKCGDAETARAVFERMKVRSESSWNAMVSLYTHQGRMDLALSMFENME 256

Query: 194 RKNVVSWTAMIGGFAWNGFHKESLLLFIEM------------------------------ 223
            +++VSW A+I G+  NG    +L  F  M                              
Sbjct: 257 ERSIVSWNAIIAGYNQNGLDDMALKFFSRMLTASSMEPDEFTVTSVLSACANLRMLKMGK 316

Query: 224 ---KGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRD--EISWTSMIDGYLS 278
                I   G   + Q  N++I+ Y + G +E A+ + D   V D   IS+T++++GY+ 
Sbjct: 317 QMHSYILRTGMPYSSQIMNALISTYAKSGSVETARRIMDKAVVADLNVISFTALLEGYVK 376

Query: 279 VGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVL 338
           +G    A  +F  M +RD +AWTAMI G  QN    EA  LF  M   G  P + T + +
Sbjct: 377 LGDTKQAREVFDVMNNRDVIAWTAMIVGYEQNGQNDEAMELFRSMIRSGPEPNSHTLAAV 436

Query: 339 FGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSR-D 397
             A  + A +  G+QIHC  +++  E  + + N +I++YA+ G +  A  +F  +  R +
Sbjct: 437 LSACASLAYLGYGKQIHCRAIRSLQEQSVSVSNAIITVYARSGSVPLARRVFDQICWRKE 496

Query: 398 LVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFN 457
            V+W SM++  + HGL  + + +FE ML  G  P+ VT++G+ SAC+HAG + +G   + 
Sbjct: 497 TVTWTSMIVALAQHGLGEQAIVLFEEMLRVGVKPDRVTYIGVFSACTHAGFIDKGKRYYE 556

Query: 458 AMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGN 517
            M + + I P   HY  M++LL RAG + EA EF+ R+P  PD  +WG+LL AC     N
Sbjct: 557 QMLNEHGIVPEMSHYACMVDLLARAGLLTEAHEFIQRMPVAPDTVVWGSLLAACRV-RKN 615

Query: 518 AEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEH---KLRMDMGLKGVRKVPGCS 574
           A++AE AA++LL +DP N+ A+  L N+Y+A GR  +     KLR D   K V+K  G S
Sbjct: 616 ADLAELAAEKLLSIDPDNSGAYSALANVYSACGRWNDAARIWKLRKD---KAVKKETGFS 672

Query: 575 WLMRNGGIQMFLSGDKIPAQ 594
           W      + +F + D +  Q
Sbjct: 673 WTHVQSKVHVFGADDVLHPQ 692



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 128/500 (25%), Positives = 212/500 (42%), Gaps = 103/500 (20%)

Query: 16  SSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVS 75
           S +  Y K G  + A+A+F+ M  R+  S+NAM+S +   GR+  A  +FE M ER++VS
Sbjct: 203 SVLYMYGKCGDAETARAVFERMKVRSESSWNAMVSLYTHQGRMDLALSMFENMEERSIVS 262

Query: 76  WTAMICGLADAGRVCEARKLFEEM-------PERNVVS---------------------- 106
           W A+I G    G    A K F  M       P+   V+                      
Sbjct: 263 WNAIIAGYNQNGLDDMALKFFSRMLTASSMEPDEFTVTSVLSACANLRMLKMGKQMHSYI 322

Query: 107 -----------WNSMVVGLIRNGELNEARKVFNSMPIK--NVISWNAMIAGYVECCMMGE 153
                       N+++    ++G +  AR++ +   +   NVIS+ A++ GYV+     +
Sbjct: 323 LRTGMPYSSQIMNALISTYAKSGSVETARRIMDKAVVADLNVISFTALLEGYVKLGDTKQ 382

Query: 154 AIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRM----PRKNVVSWTAMI---GG 206
           A  +F+ M  R+V+ WT+MI GY + G+ +E   LFR M    P  N  +  A++     
Sbjct: 383 AREVFDVMNNRDVIAWTAMIVGYEQNGQNDEAMELFRSMIRSGPEPNSHTLAAVLSACAS 442

Query: 207 FAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDE 266
            A+ G+ K+     I  + I  +    +V   N++I  Y R G +  A+ +FD +  R E
Sbjct: 443 LAYLGYGKQ-----IHCRAI-RSLQEQSVSVSNAIITVYARSGSVPLARRVFDQICWRKE 496

Query: 267 -ISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRA 325
            ++WTS                               MI  L Q+ L  +A  LF EM  
Sbjct: 497 TVTWTS-------------------------------MIVALAQHGLGEQAIVLFEEMLR 525

Query: 326 HGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILE----NCLISMYAKCG 381
            GV P   T+  +F A      ID G++ +  ++   +E  ++ E     C++ + A+ G
Sbjct: 526 VGVKPDRVTYIGVFSACTHAGFIDKGKRYYEQML---NEHGIVPEMSHYACMVDLLARAG 582

Query: 382 VIDNAYNIFSNM-VSRDLVSWNSMVMGFSHHGLANETLKVFESMLE-----SGTHPNSVT 435
           ++  A+     M V+ D V W S++        A+      E +L      SG +     
Sbjct: 583 LLTEAHEFIQRMPVAPDTVVWGSLLAACRVRKNADLAELAAEKLLSIDPDNSGAYS---A 639

Query: 436 FLGILSACSHAGLVSRGWEL 455
              + SAC      +R W+L
Sbjct: 640 LANVYSACGRWNDAARIWKL 659



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 89/322 (27%), Positives = 154/322 (47%), Gaps = 15/322 (4%)

Query: 238 CNSMINGYIRFGR----LEEAQNLFDTVPV--RDEISWTSMIDGYLSVGQVSNAYYLFHN 291
           CN++++ Y R G       EA+ LFD +P   R+  +W S++  Y   G++++A  +F  
Sbjct: 63  CNNLLSYYARAGVGRGCFHEARRLFDDIPYARRNAFTWNSLLSMYAKSGRLADARVVFAQ 122

Query: 292 MPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLG 351
           MP+RDAV+WT M+ GL +   F +A   F++M   G+ P     + +  +  AT    +G
Sbjct: 123 MPERDAVSWTVMVVGLNRAGRFWDAVKTFLDMVGEGLAPSQFMLTNVLSSCAATEARGIG 182

Query: 352 RQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHH 411
           R++H  ++K    S + + N ++ MY KCG  + A  +F  M  R   SWN+MV  ++H 
Sbjct: 183 RKVHSFVIKLGLSSCVPVANSVLYMYGKCGDAETARAVFERMKVRSESSWNAMVSLYTHQ 242

Query: 412 GLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEH 471
           G  +  L +FE+M E       V++  I++  +  GL     + F+ M     ++P    
Sbjct: 243 GRMDLALSMFENMEERSI----VSWNAIIAGYNQNGLDDMALKFFSRMLTASSMEPDEFT 298

Query: 472 YVSMINLLG--RAGKI-KEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRL 528
             S+++     R  K+ K+   ++LR       +I  AL+       G+ E A     + 
Sbjct: 299 VTSVLSACANLRMLKMGKQMHSYILRTGMPYSSQIMNALISTYAK-SGSVETARRIMDKA 357

Query: 529 LELDPLNAPAHVVLCNIYAASG 550
           +  D LN  +   L   Y   G
Sbjct: 358 VVAD-LNVISFTALLEGYVKLG 378



 Score = 45.1 bits (105), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 36/147 (24%), Positives = 54/147 (36%), Gaps = 37/147 (25%)

Query: 335 FSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGV------------ 382
           F+ L   +    N   GR IH   +K        L N L+S YA+ GV            
Sbjct: 28  FARLLQLSQTAVNPSAGRAIHAHAVKAGLLVSAYLCNNLLSYYARAGVGRGCFHEARRLF 87

Query: 383 -------------------------IDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANET 417
                                    + +A  +F+ M  RD VSW  MV+G +  G   + 
Sbjct: 88  DDIPYARRNAFTWNSLLSMYAKSGRLADARVVFAQMPERDAVSWTVMVVGLNRAGRFWDA 147

Query: 418 LKVFESMLESGTHPNSVTFLGILSACS 444
           +K F  M+  G  P+      +LS+C+
Sbjct: 148 VKTFLDMVGEGLAPSQFMLTNVLSSCA 174


>gi|449434268|ref|XP_004134918.1| PREDICTED: pentatricopeptide repeat-containing protein At5g46460,
           mitochondrial-like [Cucumis sativus]
 gi|449533166|ref|XP_004173548.1| PREDICTED: pentatricopeptide repeat-containing protein At5g46460,
           mitochondrial-like [Cucumis sativus]
          Length = 712

 Score =  347 bits (889), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 190/548 (34%), Positives = 311/548 (56%), Gaps = 7/548 (1%)

Query: 46  NAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVV 105
           N +LS  L+NGR+ EAR LF +M    V  +T MI G AD GR+ +A KLF EMP ++++
Sbjct: 54  NYLLSFHLRNGRIDEARSLFNKMSSPGVNLYTMMIGGYADEGRLEDALKLFYEMPVKDLI 113

Query: 106 SWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERN 165
           SWNSM+ G ++ G+L  A  +F+ M  +NV+SW  +I G +E   +  A  LF  M  ++
Sbjct: 114 SWNSMLKGCLKCGDLTMACNMFDKMSERNVVSWTTIINGLLEFGRVEVAECLFRVMPTKD 173

Query: 166 VVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKG 225
           V  W SM+ G+   G VE+   LF +MP +NV+SWT++IGG   NG   E+L++F +M  
Sbjct: 174 VTAWNSMVHGFFSNGRVEDAIELFEKMPNRNVISWTSVIGGLDHNGRSFEALVVFHKMLA 233

Query: 226 ICDNGNN---CNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQV 282
                ++   C + +C ++   +I    ++    +  T    +E    S+I  Y +   +
Sbjct: 234 SFKATSSTLACALTACANICTPFIG---VQIHGLIVKTGYCFNEYISASLISFYANCKLI 290

Query: 283 SNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAA 342
            NA  +F++   R+ V WTA+++G   N    +A  +F  M    V P  ++ +    + 
Sbjct: 291 DNASSIFNDNVSRNVVVWTALLTGYGLNCRHTDALQVFKGMMRMSVLPNQSSLTSALNSC 350

Query: 343 GATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWN 402
                +D GR++H V  K   ESD+ + N L+ MY KCG I++   +F+ M  +++VSWN
Sbjct: 351 CGLEAVDRGREVHAVAHKLGLESDIFVSNSLVVMYTKCGHINDGIAVFTRMSRKNVVSWN 410

Query: 403 SMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDV 462
           S+++G + HG     L +F  M+ +   P+ +T  G+LSAC H+G++++G   F      
Sbjct: 411 SIIVGCAQHGFGRWALTLFAQMIRTRVDPDEITLAGLLSACGHSGMLTKGRCFFKHFGKN 470

Query: 463 YKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAE 522
           + I+   EHY SM++LLGR G+++EAE  +  +P + ++ +W ALL +      N  +AE
Sbjct: 471 FGIEMTNEHYSSMVDLLGRYGQLEEAEALIHIMPGKANYMVWLALLSS-SINHSNVHVAE 529

Query: 523 HAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGI 582
            AAK +L+L P  + A+ +L N+YA++G+  E  K+R  M  +G+ K PG SW+   G  
Sbjct: 530 RAAKCVLDLQPNCSAAYTLLSNLYASTGKWTEVSKIRKKMKDEGILKQPGSSWITIKGIK 589

Query: 583 QMFLSGDK 590
             F+SGD+
Sbjct: 590 HNFISGDQ 597



 Score =  159 bits (402), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 111/377 (29%), Positives = 178/377 (47%), Gaps = 39/377 (10%)

Query: 15  TSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVV 74
           T  I  Y+  G +++A  LF  MP ++++S+N+ML G L+ G L+ A  +F++M ERNVV
Sbjct: 85  TMMIGGYADEGRLEDALKLFYEMPVKDLISWNSMLKGCLKCGDLTMACNMFDKMSERNVV 144

Query: 75  SWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKN 134
           SWT +I GL + GRV  A  LF  MP ++V +WNSMV G   NG + +A ++F  MP +N
Sbjct: 145 SWTTIINGLLEFGRVEVAECLFRVMPTKDVTAWNSMVHGFFSNGRVEDAIELFEKMPNRN 204

Query: 135 VISWNAMIAGYVECCMMGEAIVLFEEMEER----------------NVVT---------- 168
           VISW ++I G        EA+V+F +M                   N+ T          
Sbjct: 205 VISWTSVIGGLDHNGRSFEALVVFHKMLASFKATSSTLACALTACANICTPFIGVQIHGL 264

Query: 169 ------------WTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKES 216
                         S+IS Y     ++    +F     +NVV WTA++ G+  N  H ++
Sbjct: 265 IVKTGYCFNEYISASLISFYANCKLIDNASSIFNDNVSRNVVVWTALLTGYGLNCRHTDA 324

Query: 217 LLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWT-SMIDG 275
           L +F  M  +    N  ++ S  +   G     R  E   +   + +  +I  + S++  
Sbjct: 325 LQVFKGMMRMSVLPNQSSLTSALNSCCGLEAVDRGREVHAVAHKLGLESDIFVSNSLVVM 384

Query: 276 YLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATF 335
           Y   G +++   +F  M  ++ V+W ++I G  Q+     A  LF +M    V P   T 
Sbjct: 385 YTKCGHINDGIAVFTRMSRKNVVSWNSIIVGCAQHGFGRWALTLFAQMIRTRVDPDEITL 444

Query: 336 SVLFGAAGATANIDLGR 352
           + L  A G +  +  GR
Sbjct: 445 AGLLSACGHSGMLTKGR 461



 Score =  125 bits (314), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 100/395 (25%), Positives = 174/395 (44%), Gaps = 93/395 (23%)

Query: 1   MSERNHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSE 60
           MSERN     VV  T+ I    + G ++ A+ LF++MP ++V ++N+M+ GF  NGR+ +
Sbjct: 138 MSERN-----VVSWTTIINGLLEFGRVEVAECLFRVMPTKDVTAWNSMVHGFFSNGRVED 192

Query: 61  ARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGL------ 114
           A  LFE+MP RNV+SWT++I GL   GR  EA  +F +M      + +++   L      
Sbjct: 193 AIELFEKMPNRNVISWTSVIGGLDHNGRSFEALVVFHKMLASFKATSSTLACALTACANI 252

Query: 115 -------------IRNGE-------------------LNEARKVFNSMPIKNVISWNAMI 142
                        ++ G                    ++ A  +FN    +NV+ W A++
Sbjct: 253 CTPFIGVQIHGLIVKTGYCFNEYISASLISFYANCKLIDNASSIFNDNVSRNVVVWTALL 312

Query: 143 AGYVECCMMGEAIVLFEEME---------------------------------------E 163
            GY   C   +A+ +F+ M                                        E
Sbjct: 313 TGYGLNCRHTDALQVFKGMMRMSVLPNQSSLTSALNSCCGLEAVDRGREVHAVAHKLGLE 372

Query: 164 RNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEM 223
            ++    S++  Y + G + +G  +F RM RKNVVSW ++I G A +GF + +L LF +M
Sbjct: 373 SDIFVSNSLVVMYTKCGHINDGIAVFTRMSRKNVVSWNSIIVGCAQHGFGRWALTLFAQM 432

Query: 224 KGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFD------TVPVRDEISWTSMIDGYL 277
                + +   +     +++     G L + +  F        + + +E  ++SM+D   
Sbjct: 433 IRTRVDPDEITLA---GLLSACGHSGMLTKGRCFFKHFGKNFGIEMTNE-HYSSMVDLLG 488

Query: 278 SVGQVSNAYYLFHNMPDR-DAVAWTAMISGLVQNE 311
             GQ+  A  L H MP + + + W A++S  + + 
Sbjct: 489 RYGQLEEAEALIHIMPGKANYMVWLALLSSSINHS 523


>gi|255551961|ref|XP_002517025.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223543660|gb|EEF45188.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 640

 Score =  346 bits (888), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 199/579 (34%), Positives = 312/579 (53%), Gaps = 18/579 (3%)

Query: 21  YSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMI 80
           YSK G +  A  LF   P+ N   + A++ GF +N +   A   F +M   N+V     I
Sbjct: 46  YSKFGAVSYAHKLFDETPEPNSFLWTALIHGFTENNQYENAFAFFIKMHRENIVPLNFTI 105

Query: 81  CGLADA----GRVCEARKLFEEMP----ERNVVSWNSMVVGLIRNGELNEARKVFNSMPI 132
             +  A    GR+ +   ++        E ++V  N M+   +R GE+  AR++F+ M  
Sbjct: 106 ASVLKAVSRLGRIKDGDLVYGLAVRCGYEFDLVVKNVMIELFMRCGEMGSARQMFDEMEE 165

Query: 133 KNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRM 192
           ++ +SWN+MI GY     +  A  LF+ MEERNV++WTSMI GY +AG++ E   LF RM
Sbjct: 166 RDAVSWNSMITGYGNNGRVDIARKLFDRMEERNVISWTSMIQGYVKAGDLLEARVLFERM 225

Query: 193 PRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLE 252
           P K++ SW  M+  +   G    +  LF E+  I D G      + N MI+G  + G ++
Sbjct: 226 PEKDLASWKVMVSAYMSVGNLVAARNLF-ELMPIHDVG------TWNLMISGCCKAGEMD 278

Query: 253 EAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNEL 312
            A+  FD +  R+  SW  +IDGY+ VG V  A  +F  MP+++ VAW+ MI G  +   
Sbjct: 279 AAKEFFDRMQERNVASWVMIIDGYIKVGDVDAARSVFDQMPEKNLVAWSTMIGGYAKTGH 338

Query: 313 FVEATYLFMEMRAHGVPPLNATFSV-LFGAAGATANIDLGRQIHCVLMKTESESDLILEN 371
              +  L+   +  G+ P + TF++ +  A       D    + C  +      +L +  
Sbjct: 339 PYSSLKLYKTFKEQGIKP-DETFALGIISACSQLGVPDTAESVICDFVGPSLFPNLQVVT 397

Query: 372 CLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHP 431
            LI MYAKCG I+ A  +F  +  +DL  +++++  F++HGL+ + + +F  M ++   P
Sbjct: 398 SLIDMYAKCGNIERAVQVFEMVDQKDLHCYSTVITAFANHGLSEDAISLFSEMQKANIKP 457

Query: 432 NSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEF 491
           + V FLG+L+AC+H GLV  G  LF  M D Y IQP  +HY  M+++LGRAG ++EA   
Sbjct: 458 DGVAFLGVLTACNHGGLVGEGRRLFRQMIDEYGIQPSEKHYACMVDILGRAGCLEEAHSL 517

Query: 492 VLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGR 551
           +  +P  P+  +WGALL AC     N ++AE AA  L +++P N+  +V+L NIYA +G+
Sbjct: 518 ICSMPVAPNATVWGALLSACR-VHLNVQLAEAAATELFQIEPNNSGNYVLLFNIYADAGQ 576

Query: 552 HVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDK 590
             +  K+R  +    VRK  G SW+     I  F+ GDK
Sbjct: 577 WDDFSKVRAMIRENRVRKNRGSSWIELGSVIHEFVMGDK 615



 Score =  168 bits (425), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 104/372 (27%), Positives = 178/372 (47%), Gaps = 31/372 (8%)

Query: 1   MSERNHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSE 60
           M ER+      V   S IT Y   G +D A+ LF  M +RNV+S+ +M+ G+++ G L E
Sbjct: 163 MEERD-----AVSWNSMITGYGNNGRVDIARKLFDRMEERNVISWTSMIQGYVKAGDLLE 217

Query: 61  ARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGEL 120
           AR LFE MPE+++ SW  M+      G +  AR LFE MP  +V +WN M+ G  + GE+
Sbjct: 218 ARVLFERMPEKDLASWKVMVSAYMSVGNLVAARNLFELMPIHDVGTWNLMISGCCKAGEM 277

Query: 121 NEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAG 180
           + A++ F+ M  +NV SW  +I GY++   +  A  +F++M E+N+V W++MI GY + G
Sbjct: 278 DAAKEFFDRMQERNVASWVMIIDGYIKVGDVDAARSVFDQMPEKNLVAWSTMIGGYAKTG 337

Query: 181 EVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNC------- 233
                  L++    + +        G          ++      G+ D   +        
Sbjct: 338 HPYSSLKLYKTFKEQGIKPDETFALG----------IISACSQLGVPDTAESVICDFVGP 387

Query: 234 ----NVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLF 289
               N+Q   S+I+ Y + G +E A  +F+ V  +D   ++++I  + + G   +A  LF
Sbjct: 388 SLFPNLQVVTSLIDMYAKCGNIERAVQVFEMVDQKDLHCYSTVITAFANHGLSEDAISLF 447

Query: 290 HNMPDR----DAVAWTAMISGLVQNELFVEATYLFMEM-RAHGVPPLNATFSVLFGAAGA 344
             M       D VA+  +++      L  E   LF +M   +G+ P    ++ +    G 
Sbjct: 448 SEMQKANIKPDGVAFLGVLTACNHGGLVGEGRRLFRQMIDEYGIQPSEKHYACMVDILGR 507

Query: 345 TANIDLGRQIHC 356
              ++    + C
Sbjct: 508 AGCLEEAHSLIC 519



 Score =  142 bits (357), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 98/350 (28%), Positives = 166/350 (47%), Gaps = 51/350 (14%)

Query: 1   MSERNHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSE 60
           M ERN     V+  TS I  Y K G + EA+ LF+ MP++++ S+  M+S ++  G L  
Sbjct: 194 MEERN-----VISWTSMIQGYVKAGDLLEARVLFERMPEKDLASWKVMVSAYMSVGNLVA 248

Query: 61  ARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGEL 120
           AR LFE MP  +V +W  MI G   AG +  A++ F+ M ERNV SW  ++ G I+ G++
Sbjct: 249 ARNLFELMPIHDVGTWNLMISGCCKAGEMDAAKEFFDRMQERNVASWVMIIDGYIKVGDV 308

Query: 121 NEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEER---------------- 164
           + AR VF+ MP KN+++W+ MI GY +      ++ L++  +E+                
Sbjct: 309 DAARSVFDQMPEKNLVAWSTMIGGYAKTGHPYSSLKLYKTFKEQGIKPDETFALGIISAC 368

Query: 165 -----------------------NVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWT 201
                                  N+   TS+I  Y + G +E    +F  + +K++  ++
Sbjct: 369 SQLGVPDTAESVICDFVGPSLFPNLQVVTSLIDMYAKCGNIERAVQVFEMVDQKDLHCYS 428

Query: 202 AMIGGFAWNGFHKESLLLFIEMKGICDNGNNCN----VQSCNSMINGYIRFGRLEEAQNL 257
            +I  FA +G  ++++ LF EM+      +       + +CN    G +  GR    Q +
Sbjct: 429 TVITAFANHGLSEDAISLFSEMQKANIKPDGVAFLGVLTACNH--GGLVGEGRRLFRQMI 486

Query: 258 FDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMP-DRDAVAWTAMISG 306
            +      E  +  M+D     G +  A+ L  +MP   +A  W A++S 
Sbjct: 487 DEYGIQPSEKHYACMVDILGRAGCLEEAHSLICSMPVAPNATVWGALLSA 536



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 68/270 (25%), Positives = 125/270 (46%), Gaps = 21/270 (7%)

Query: 266 EISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRA 325
           +++   ++  Y   G VS A+ LF   P+ ++  WTA+I G  +N  +  A   F++M  
Sbjct: 36  DLTLNKLLRLYSKFGAVSYAHKLFDETPEPNSFLWTALIHGFTENNQYENAFAFFIKMHR 95

Query: 326 HGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDN 385
             + PLN T + +  A      I  G  ++ + ++   E DL+++N +I ++ +CG + +
Sbjct: 96  ENIVPLNFTIASVLKAVSRLGRIKDGDLVYGLAVRCGYEFDLVVKNVMIELFMRCGEMGS 155

Query: 386 AYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSH 445
           A  +F  M  RD VSWNSM+ G+ ++G  +   K+F+ M E     N +++  ++     
Sbjct: 156 ARQMFDEMEERDAVSWNSMITGYGNNGRVDIARKLFDRMEER----NVISWTSMIQGYVK 211

Query: 446 AGLVSRGWELFNAMFDVYKIQPGPEHYVS----MINLLGRAGKIKEAEEFVLRLPFEPDH 501
           AG +     LF  M         PE  ++    M++     G +  A      +P   D 
Sbjct: 212 AGDLLEARVLFERM---------PEKDLASWKVMVSAYMSVGNLVAARNLFELMPIH-DV 261

Query: 502 RIWGALLGACGFCE-GNAEIAEHAAKRLLE 530
             W  ++  C  C+ G  + A+    R+ E
Sbjct: 262 GTWNLMISGC--CKAGEMDAAKEFFDRMQE 289


>gi|125550574|gb|EAY96283.1| hypothetical protein OsI_18181 [Oryza sativa Indica Group]
          Length = 661

 Score =  346 bits (888), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 202/570 (35%), Positives = 309/570 (54%), Gaps = 15/570 (2%)

Query: 33  LFQLMPQRN-VVSYNAMLSGFLQNGRLSEARRLFEEMPE--RNVVSWTAMICGLADAGRV 89
           +F  MP+R+  V+Y AM+   L +  L  A  L+   P   R +   T M+ G   AG+V
Sbjct: 80  MFDGMPRRDDAVAYAAMVGIHLWDRDLPHAEALYRAAPPDCRGIHLDTVMLDGYVKAGQV 139

Query: 90  CEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECC 149
             AR+LF+ M  +NVV+W  MV G  R G ++EAR++F+ MP +NV SW  M+ GY    
Sbjct: 140 DRARRLFDGMAVKNVVAWTCMVSGYCRAGLVDEARRLFDLMPYRNVFSWTTMVQGYAHNG 199

Query: 150 MMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAW 209
           M+ EA  +F++M ERNVV WT M+  Y   G ++E   LF RMP+ N  SW AM  G   
Sbjct: 200 MLREAREMFDKMPERNVVAWTVMVKAYVDNGCIQEALELFNRMPQMNSYSWNAMATGLMS 259

Query: 210 NGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISW 269
            G   +++ LF +M        + NV S   M+ G  + G +  A+  FD +P +D  +W
Sbjct: 260 AGKVDDAVQLFDKMP-------HKNVVSWTIMVTGLAQNGFVSRAREFFDRMPKKDIPAW 312

Query: 270 TSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVP 329
            SMI  Y + GQV++A  LF  MP ++ V W  +I G   N L  EA  LF+ M    V 
Sbjct: 313 NSMITAYTNDGQVNDAQRLFDIMPSKNLVTWNIIIDGYSMNNLKDEALRLFLLMLRSAVS 372

Query: 330 PLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNI 389
           P + T   +   + +T  +   RQIH +  K   + +  L N L+SMY++ G + +A+  
Sbjct: 373 PDSTTLISVLVVSESTMEV---RQIHGLSTKLGYQPETNLGNTLVSMYSRSGDLSSAWLA 429

Query: 390 FSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLV 449
           F  +  +D ++W SM+   ++HG A   L+ F  ML  G  P+S TF  +LSAC+H GLV
Sbjct: 430 FRRLNEKDAITWTSMIQALANHGCAPCALQGFAQMLRCGYKPSSTTFTAVLSACNHVGLV 489

Query: 450 SRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEP-DHRIWGALL 508
            +G ++F ++  VY ++P  EHY  +++LLGRAG ++EA+E V  +  +  D  I G LL
Sbjct: 490 EKGRKIFKSISHVYGLEPTIEHYSCLVDLLGRAGYVREAKEVVDGMQRDMCDEAILGTLL 549

Query: 509 GACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVR 568
           G+C       E+     + L+++DP  +  + +L N++A+ G   E   +   M    V+
Sbjct: 550 GSC-MTHNEVEVGRAVGEDLVKIDPSGSGGYTLLANVFASGGMWNEVASVWKIMKGSKVK 608

Query: 569 KVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
           K PG S +  N    +F S D++ +Q  EI
Sbjct: 609 KTPGFSQIEVNARNHVFYSRDQMHSQRTEI 638



 Score =  224 bits (571), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 123/390 (31%), Positives = 206/390 (52%), Gaps = 6/390 (1%)

Query: 11  VVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPE 70
           VV  T  ++ Y + G +DEA+ LF LMP RNV S+  M+ G+  NG L EAR +F++MPE
Sbjct: 154 VVAWTCMVSGYCRAGLVDEARRLFDLMPYRNVFSWTTMVQGYAHNGMLREAREMFDKMPE 213

Query: 71  RNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSM 130
           RNVV+WT M+    D G + EA +LF  MP+ N  SWN+M  GL+  G++++A ++F+ M
Sbjct: 214 RNVVAWTVMVKAYVDNGCIQEALELFNRMPQMNSYSWNAMATGLMSAGKVDDAVQLFDKM 273

Query: 131 PIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFR 190
           P KNV+SW  M+ G  +   +  A   F+ M ++++  W SMI+ Y   G+V +   LF 
Sbjct: 274 PHKNVVSWTIMVTGLAQNGFVSRAREFFDRMPKKDIPAWNSMITAYTNDGQVNDAQRLFD 333

Query: 191 RMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGR 250
            MP KN+V+W  +I G++ N    E+L LF+ M     + ++  + S   +    +    
Sbjct: 334 IMPSKNLVTWNIIIDGYSMNNLKDEALRLFLLMLRSAVSPDSTTLISVLVVSESTM---E 390

Query: 251 LEEAQNLFDTVPVRDEISW-TSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQ 309
           + +   L   +  + E +   +++  Y   G +S+A+  F  + ++DA+ WT+MI  L  
Sbjct: 391 VRQIHGLSTKLGYQPETNLGNTLVSMYSRSGDLSSAWLAFRRLNEKDAITWTSMIQALAN 450

Query: 310 NELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTES-ESDLI 368
           +     A   F +M   G  P + TF+ +  A      ++ GR+I   +      E  + 
Sbjct: 451 HGCAPCALQGFAQMLRCGYKPSSTTFTAVLSACNHVGLVEKGRKIFKSISHVYGLEPTIE 510

Query: 369 LENCLISMYAKCGVIDNAYNIFSNMVSRDL 398
             +CL+ +  + G +  A  +   M  RD+
Sbjct: 511 HYSCLVDLLGRAGYVREAKEVVDGM-QRDM 539


>gi|449462814|ref|XP_004149135.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Cucumis sativus]
 gi|449523485|ref|XP_004168754.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Cucumis sativus]
          Length = 687

 Score =  345 bits (886), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 197/603 (32%), Positives = 325/603 (53%), Gaps = 50/603 (8%)

Query: 46  NAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVV 105
           N ++  + + G +  AR+LF+ M ERN+ SW ++IC    +G + +A  +FE+MP+ +  
Sbjct: 58  NRLIDVYGKCGCVDVARKLFDRMLERNIFSWNSIICAFTKSGFLDDAVHIFEKMPQVDQC 117

Query: 106 SWNSMVVGLIRNGELNEARKVFNSMP----IKNVISWNAMIAGY--VECCMMGEAI--VL 157
           SWNSM+ G  ++G  +EA   F  M     + N  S+ + ++    ++   +G  I  ++
Sbjct: 118 SWNSMISGFEQHGRFDEALVYFAQMHGHGFLVNEYSFGSALSACAGLQDLKLGSQIHSLV 177

Query: 158 FEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESL 217
           +      +V   ++++  Y + G VE    +F  M  ++ VSW ++I  +  NG   E+L
Sbjct: 178 YRSNYLSDVYMGSALVDMYSKCGRVEYAQSVFDEMTVRSRVSWNSLITCYEQNGPVDEAL 237

Query: 218 LLFIEMKGI----------------------------------CDNGNNCNVQSCNSMIN 243
            +F+EM                                     CD   N ++   N++++
Sbjct: 238 KIFVEMIKCGVEPDEVTLASVVSACATISAIKEGQQIHARVVKCDEFRN-DLILGNALLD 296

Query: 244 GYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAM 303
            Y +  R+ EA+ +FD +P+R  +S TSM+ GY    +V  A Y+F NM  +D + W A+
Sbjct: 297 MYAKCNRINEARIIFDMMPIRSVVSETSMVSGYAKASKVKVARYMFSNMMVKDVITWNAL 356

Query: 304 ISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMK--- 360
           I+G  QN    EA  LF  ++   V P + TF  L  A    A++ LGRQ H  ++K   
Sbjct: 357 IAGCTQNGENEEALILFRLLKRESVWPTHYTFGNLLNACANLADLQLGRQAHSHVLKHGF 416

Query: 361 ---TESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANET 417
                 +SD+ + N LI MY KCG ++N   +F +M+ +D VSWN+M++G++ +G  N+ 
Sbjct: 417 RFQYGEDSDVFVGNSLIDMYMKCGSVENGCRVFQHMLEKDCVSWNAMIVGYAQNGFGNKA 476

Query: 418 LKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMIN 477
           L+VF  MLESG  P+ VT +G+L ACSHAGL+  G   F +M   + + P  +HY  M++
Sbjct: 477 LEVFCKMLESGEAPDHVTMIGVLCACSHAGLLDEGRYYFRSMTAQHGLMPLKDHYTCMVD 536

Query: 478 LLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAP 537
           LLGRAG ++EA+  +  +  +PD  +WG+LL AC     N ++ E+  K+LLE+DP N+ 
Sbjct: 537 LLGRAGYLEEAKNLIEEMSMQPDAIVWGSLLAACKV-HRNIQLGEYVVKKLLEVDPENSG 595

Query: 538 AHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAE 597
            +V+L N+YA +       ++R  M  +GV K PGCSW+   G + +F+  DK  A+  E
Sbjct: 596 PYVLLSNMYAENRDWKNVVRVRKLMRQRGVVKQPGCSWIEIQGELNVFMVKDKRHARKKE 655

Query: 598 ILL 600
           I +
Sbjct: 656 IYM 658



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 27/93 (29%), Positives = 52/93 (55%)

Query: 332 NATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFS 391
           ++ FS L      + +     ++H  ++K+   S+  ++N LI +Y KCG +D A  +F 
Sbjct: 19  SSPFSKLLNQCARSRSARDTSRVHACIIKSPFASETFIQNRLIDVYGKCGCVDVARKLFD 78

Query: 392 NMVSRDLVSWNSMVMGFSHHGLANETLKVFESM 424
            M+ R++ SWNS++  F+  G  ++ + +FE M
Sbjct: 79  RMLERNIFSWNSIICAFTKSGFLDDAVHIFEKM 111


>gi|413918370|gb|AFW58302.1| hypothetical protein ZEAMMB73_070872 [Zea mays]
          Length = 688

 Score =  345 bits (886), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 196/593 (33%), Positives = 315/593 (53%), Gaps = 50/593 (8%)

Query: 46  NAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVV 105
           N ++S + + GRL EARR+F+ +P RN  S+ A++   A  GR  EAR LFE +P+ +  
Sbjct: 56  NTLVSTYARLGRLREARRVFDGIPLRNTFSYNALLSAYARLGRPDEARALFEAIPDPDQC 115

Query: 106 SWNSMVVGLIRNGE--LNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEME- 162
           S+N++V  L R+G     +A +   +M   + +      A  +  C   + +   E++  
Sbjct: 116 SYNAVVAALARHGRGHAGDALRFLAAMHADDFVLNAYSFASALSACAAEKDLRTGEQVHG 175

Query: 163 -------ERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKE 215
                    +V   T+++  Y +     +   +F  MP +NVVSW ++I  +  NG   E
Sbjct: 176 LVARSPHADDVHIGTALVDMYAKCERPVDARRVFDAMPERNVVSWNSLITCYEQNGPVGE 235

Query: 216 SLLLFIEMKGICDNGNNCNVQSC---------------------------------NSMI 242
           +L+LF+EM       +   + S                                  N+++
Sbjct: 236 ALVLFVEMMATGFFPDEVTLSSVMSACAGLAAEREGRQVHAHMVKRDRLRDDMVLNNALV 295

Query: 243 NGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTA 302
           + Y + GR  EA+ +FD++P R  +S TS++ GY     V +A  +F  M +++ +AW  
Sbjct: 296 DMYAKCGRTWEARCIFDSMPSRSVVSETSILAGYAKSANVEDAQVVFSQMVEKNVIAWNV 355

Query: 303 MISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTE 362
           +I+   QN    EA  LF++++   + P + T+  +  A G  A + LG+Q H  ++K  
Sbjct: 356 LIAAYAQNGEEEEAIRLFVQLKRDSIWPTHYTYGNVLNACGNIAVLQLGQQAHVHVLKEG 415

Query: 363 ------SESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANE 416
                  ESD+ + N L+ MY K G ID+   +F  M +RD VSWN+M++G++ +G A +
Sbjct: 416 FRFDFGPESDVFVGNSLVDMYLKTGSIDDGAKVFERMAARDNVSWNAMIVGYAQNGRAKD 475

Query: 417 TLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMI 476
            L +FE ML S  +P+SVT +G+LSAC H+GLV  G   F+ M + + I P  +HY  M+
Sbjct: 476 ALHLFERMLCSNENPDSVTMIGVLSACGHSGLVDEGRRHFHFMTEDHGITPSRDHYTCMV 535

Query: 477 NLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNA 536
           +LLGRAG +KEAEE +  +P EPD  +W +LLGAC     N E+ E  A RL ELDP N+
Sbjct: 536 DLLGRAGHLKEAEELIKDMPTEPDSVLWASLLGACRL-HKNVELGERTAGRLFELDPENS 594

Query: 537 PAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGD 589
             +V+L N+YA  G+  +  ++R  M  +GV K PGCSW+     + +FL+ D
Sbjct: 595 GPYVLLSNMYAEMGKWADVFRVRRSMKDRGVSKQPGCSWIEIGSKMNVFLARD 647



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 74/293 (25%), Positives = 139/293 (47%), Gaps = 23/293 (7%)

Query: 1   MSERNHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSE 60
           M +R+  +  +V   + +  Y+K G   EA+ +F  MP R+VVS  ++L+G+ ++  + +
Sbjct: 278 MVKRDRLRDDMVLNNALVDMYAKCGRTWEARCIFDSMPSRSVVSETSILAGYAKSANVED 337

Query: 61  ARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNG-- 118
           A+ +F +M E+NV++W  +I   A  G   EA +LF ++ +R+ +       G + N   
Sbjct: 338 AQVVFSQMVEKNVIAWNVLIAAYAQNGEEEEAIRLFVQL-KRDSIWPTHYTYGNVLNACG 396

Query: 119 -----ELNEARKV--------FNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERN 165
                +L +   V        F+  P  +V   N+++  Y++   + +   +FE M  R+
Sbjct: 397 NIAVLQLGQQAHVHVLKEGFRFDFGPESDVFVGNSLVDMYLKTGSIDDGAKVFERMAARD 456

Query: 166 VVTWTSMISGYCRAGEVEEGYCLFRRM----PRKNVVSWTAMIGGFAWNGFHKESLLLFI 221
            V+W +MI GY + G  ++   LF RM       + V+   ++     +G   E    F 
Sbjct: 457 NVSWNAMIVGYAQNGRAKDALHLFERMLCSNENPDSVTMIGVLSACGHSGLVDEGRRHFH 516

Query: 222 EMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVR-DEISWTSMI 273
            M    D+G   +      M++   R G L+EA+ L   +P   D + W S++
Sbjct: 517 FMTE--DHGITPSRDHYTCMVDLLGRAGHLKEAEELIKDMPTEPDSVLWASLL 567



 Score = 47.8 bits (112), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 37/169 (21%), Positives = 72/169 (42%), Gaps = 8/169 (4%)

Query: 351 GRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSH 410
            R  H  ++K+    +  L N L+S YA+ G +  A  +F  +  R+  S+N+++  ++ 
Sbjct: 36  ARAAHGCVLKSPVAGETFLLNTLVSTYARLGRLREARRVFDGIPLRNTFSYNALLSAYAR 95

Query: 411 HGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWEL-FNAMFDVYKIQPGP 469
            G  +E   +FE++ +    P+  ++  +++A +  G    G  L F A           
Sbjct: 96  LGRPDEARALFEAIPD----PDQCSYNAVVAALARHGRGHAGDALRFLAAMHADDFVLNA 151

Query: 470 EHYVSMINLLGRAGKIKEAEE---FVLRLPFEPDHRIWGALLGACGFCE 515
             + S ++       ++  E+    V R P   D  I  AL+     CE
Sbjct: 152 YSFASALSACAAEKDLRTGEQVHGLVARSPHADDVHIGTALVDMYAKCE 200


>gi|296087629|emb|CBI34885.3| unnamed protein product [Vitis vinifera]
          Length = 728

 Score =  345 bits (886), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 206/630 (32%), Positives = 330/630 (52%), Gaps = 73/630 (11%)

Query: 41  NVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMP 100
           ++V  N M+S ++Q G L +AR LF+EMPERN VSW+A+I GL   GRV E+   FE  P
Sbjct: 86  DLVVSNCMISAYVQWGNLVQARLLFDEMPERNEVSWSALISGLMKYGRVEESMWYFERNP 145

Query: 101 ERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECC----------- 149
            +NVVSW + + G +RNG   EA K+F  +    V   +      V  C           
Sbjct: 146 FQNVVSWTAAISGFVRNGLNFEALKLFFRLLESGVRPNDVTFTSVVRACGELGDFGLGMS 205

Query: 150 -------------------------MMGE---AIVLFEEMEERNVVTWTSMISGYCRAGE 181
                                     MGE   A  +F+ ME+R+VV+WT+++  Y   G+
Sbjct: 206 ILGLVVKAGFEHYLSVSNSLITLSLRMGEIDLARRVFDRMEKRDVVSWTAILDAYVETGD 265

Query: 182 VEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEM--KGICDN---------- 229
           + E   +F  MP +N +SW+AMI  ++ +G+ +E+L LF +M  +G   N          
Sbjct: 266 LREARRIFDEMPERNEISWSAMIARYSQSGYAEEALKLFSKMVQEGFKPNISCFACTLSA 325

Query: 230 --------------------GNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISW 269
                               G + +V   +S+I+ Y + G+ ++ + +FD +  ++ + W
Sbjct: 326 LASLRALSAGINIHGHVTKIGIDKDVFIGSSLIDLYCKCGKPDDGRLVFDLILEKNVVCW 385

Query: 270 TSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVP 329
            SM+ GY   G++     LF  +P+++ V+W  +I+G ++NE   +   +F  +   G  
Sbjct: 386 NSMVGGYSINGRLEETEELFELIPEKNDVSWGTIIAGYLENEQCEKVLEVFNTLLVSGQT 445

Query: 330 PLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNI 389
           P  +TFS +  A  + A++D G  +H  ++K   + D+ +   L  MYAKCG I ++  +
Sbjct: 446 PNKSTFSSVLCACASIASLDKGMNVHGKIIKLGIQYDIFVGTALTDMYAKCGDIGSSKQV 505

Query: 390 FSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESM-LESGTHPNSVTFLGILSACSHAGL 448
           F  M  ++ +SW  M+ G +  G A E+L +FE M   S   PN +  L +L ACSH GL
Sbjct: 506 FERMPEKNEISWTVMIQGLAESGFAVESLILFEEMERTSEVAPNELMLLSVLFACSHCGL 565

Query: 449 VSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALL 508
           V +G   FN+M  VY I+P  +HY  +++LL R+G++ EAEEF+  +PF+P+   W ALL
Sbjct: 566 VDKGLWYFNSMEKVYGIKPKGKHYTCVVDLLSRSGRLYEAEEFIRTIPFQPEANAWAALL 625

Query: 509 GACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVR 568
             C   + + +IAE  AK+L +L   N+  +V+L NIYA++GR ++   +R  M  KG++
Sbjct: 626 SGCKKYK-DEKIAERTAKKLWQLAENNSAGYVLLSNIYASAGRWIDVSNIRKLMREKGLK 684

Query: 569 KVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
           K  GCSW+     +  F S D   +Q  EI
Sbjct: 685 KSGGCSWVEVRNQVHSFYSEDGSHSQSNEI 714



 Score =  194 bits (494), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 143/503 (28%), Positives = 234/503 (46%), Gaps = 84/503 (16%)

Query: 118 GELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYC 177
            E+++  K F+     +++  N MI+ YV+   + +A +LF+EM ERN V+W+++ISG  
Sbjct: 73  AEIDQIVKEFDG---SDLVVSNCMISAYVQWGNLVQARLLFDEMPERNEVSWSALISGLM 129

Query: 178 RAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEM--KGICDNGNNCN- 234
           + G VEE    F R P +NVVSWTA I GF  NG + E+L LF  +   G+  N      
Sbjct: 130 KYGRVEESMWYFERNPFQNVVSWTAAISGFVRNGLNFEALKLFFRLLESGVRPNDVTFTS 189

Query: 235 -VQSC----------------------------NSMINGYIRFGRLEEAQNLFDTVPVRD 265
            V++C                            NS+I   +R G ++ A+ +FD +  RD
Sbjct: 190 VVRACGELGDFGLGMSILGLVVKAGFEHYLSVSNSLITLSLRMGEIDLARRVFDRMEKRD 249

Query: 266 EISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRA 325
            +SWT+++D Y+  G +  A  +F  MP+R+ ++W+AMI+   Q+    EA  LF +M  
Sbjct: 250 VVSWTAILDAYVETGDLREARRIFDEMPERNEISWSAMIARYSQSGYAEEALKLFSKMVQ 309

Query: 326 HGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDN 385
            G  P  + F+    A  +   +  G  IH  + K   + D+ + + LI +Y KCG  D+
Sbjct: 310 EGFKPNISCFACTLSALASLRALSAGINIHGHVTKIGIDKDVFIGSSLIDLYCKCGKPDD 369

Query: 386 AYNIFSNMVSRDLVSWNSMVMGFSHHG---------------------------LANE-- 416
              +F  ++ +++V WNSMV G+S +G                           L NE  
Sbjct: 370 GRLVFDLILEKNVVCWNSMVGGYSINGRLEETEELFELIPEKNDVSWGTIIAGYLENEQC 429

Query: 417 --TLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDV---YKIQPGPEH 471
              L+VF ++L SG  PN  TF  +L AC+    + +G  +   +  +   Y I  G   
Sbjct: 430 EKVLEVFNTLLVSGQTPNKSTFSSVLCACASIASLDKGMNVHGKIIKLGIQYDIFVG--- 486

Query: 472 YVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGAL---LGACGFC-------EGNAEIA 521
             ++ ++  + G I  +++   R+P E +   W  +   L   GF        E     +
Sbjct: 487 -TALTDMYAKCGDIGSSKQVFERMP-EKNEISWTVMIQGLAESGFAVESLILFEEMERTS 544

Query: 522 EHAAKRLLELDPLNAPAHVVLCN 544
           E A   L+ L  L A +H  L +
Sbjct: 545 EVAPNELMLLSVLFACSHCGLVD 567



 Score =  144 bits (364), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 97/324 (29%), Positives = 155/324 (47%), Gaps = 37/324 (11%)

Query: 220 FIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSV 279
           F E+  I    +  ++   N MI+ Y+++G L +A+ LFD +P R+E+SW+++I G +  
Sbjct: 72  FAEIDQIVKEFDGSDLVVSNCMISAYVQWGNLVQARLLFDEMPERNEVSWSALISGLMKY 131

Query: 280 GQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLF 339
           G+V  + + F   P ++ V+WTA ISG V+N L  EA  LF  +   GV P + TF+ + 
Sbjct: 132 GRVEESMWYFERNPFQNVVSWTAAISGFVRNGLNFEALKLFFRLLESGVRPNDVTFTSVV 191

Query: 340 GAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLV 399
            A G   +  LG  I  +++K   E  L + N LI++  + G ID A  +F  M  RD+V
Sbjct: 192 RACGELGDFGLGMSILGLVVKAGFEHYLSVSNSLITLSLRMGEIDLARRVFDRMEKRDVV 251

Query: 400 -------------------------------SWNSMVMGFSHHGLANETLKVFESMLESG 428
                                          SW++M+  +S  G A E LK+F  M++ G
Sbjct: 252 SWTAILDAYVETGDLREARRIFDEMPERNEISWSAMIARYSQSGYAEEALKLFSKMVQEG 311

Query: 429 THPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYV--SMINLLGRAGKIK 486
             PN   F   LSA +    +S G    N    V KI    + ++  S+I+L  + GK  
Sbjct: 312 FKPNISCFACTLSALASLRALSAG---INIHGHVTKIGIDKDVFIGSSLIDLYCKCGKPD 368

Query: 487 EAEEFVLRLPFEPDHRIWGALLGA 510
           +    V  L  E +   W +++G 
Sbjct: 369 DG-RLVFDLILEKNVVCWNSMVGG 391


>gi|15225445|ref|NP_178983.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206168|sp|Q9SIT7.1|PP151_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g13600
 gi|4558664|gb|AAD22682.1| hypothetical protein [Arabidopsis thaliana]
 gi|330251150|gb|AEC06244.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 697

 Score =  345 bits (885), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 190/600 (31%), Positives = 318/600 (53%), Gaps = 48/600 (8%)

Query: 46  NAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVV 105
           N ++  + + G L + R++F++MP+RN+ +W +++ GL   G + EA  LF  MPER+  
Sbjct: 59  NRLIDAYSKCGSLEDGRQVFDKMPQRNIYTWNSVVTGLTKLGFLDEADSLFRSMPERDQC 118

Query: 106 SWNSMVVGLIRNGELNEARKVFNSMP---------------------------------- 131
           +WNSMV G  ++    EA   F  M                                   
Sbjct: 119 TWNSMVSGFAQHDRCEEALCYFAMMHKEGFVLNEYSFASVLSACSGLNDMNKGVQVHSLI 178

Query: 132 -----IKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGY 186
                + +V   +A++  Y +C  + +A  +F+EM +RNVV+W S+I+ + + G   E  
Sbjct: 179 AKSPFLSDVYIGSALVDMYSKCGNVNDAQRVFDEMGDRNVVSWNSLITCFEQNGPAVEAL 238

Query: 187 CLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKG--ICDNGNNCNVQSCNSMING 244
            +F+ M    V      +           ++ +  E+ G  + ++    ++   N+ ++ 
Sbjct: 239 DVFQMMLESRVEPDEVTLASVISACASLSAIKVGQEVHGRVVKNDKLRNDIILSNAFVDM 298

Query: 245 YIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMI 304
           Y +  R++EA+ +FD++P+R+ I+ TSMI GY        A  +F  M +R+ V+W A+I
Sbjct: 299 YAKCSRIKEARFIFDSMPIRNVIAETSMISGYAMAASTKAARLMFTKMAERNVVSWNALI 358

Query: 305 SGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMK---- 360
           +G  QN    EA  LF  ++   V P + +F+ +  A    A + LG Q H  ++K    
Sbjct: 359 AGYTQNGENEEALSLFCLLKRESVCPTHYSFANILKACADLAELHLGMQAHVHVLKHGFK 418

Query: 361 --TESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETL 418
             +  E D+ + N LI MY KCG ++  Y +F  M+ RD VSWN+M++GF+ +G  NE L
Sbjct: 419 FQSGEEDDIFVGNSLIDMYVKCGCVEEGYLVFRKMMERDCVSWNAMIIGFAQNGYGNEAL 478

Query: 419 KVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINL 478
           ++F  MLESG  P+ +T +G+LSAC HAG V  G   F++M   + + P  +HY  M++L
Sbjct: 479 ELFREMLESGEKPDHITMIGVLSACGHAGFVEEGRHYFSSMTRDFGVAPLRDHYTCMVDL 538

Query: 479 LGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPA 538
           LGRAG ++EA+  +  +P +PD  IWG+LL AC     N  + ++ A++LLE++P N+  
Sbjct: 539 LGRAGFLEEAKSMIEEMPMQPDSVIWGSLLAACKV-HRNITLGKYVAEKLLEVEPSNSGP 597

Query: 539 HVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
           +V+L N+YA  G+  +   +R  M  +GV K PGCSW+   G   +F+  DK   +  +I
Sbjct: 598 YVLLSNMYAELGKWEDVMNVRKSMRKEGVTKQPGCSWIKIQGHDHVFMVKDKSHPRKKQI 657



 Score =  171 bits (434), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 143/510 (28%), Positives = 218/510 (42%), Gaps = 92/510 (18%)

Query: 7   PKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFE 66
           P+  +    S +T  +K GF+DEA +LF+ MP+R+  ++N+M+SGF Q+ R  EA   F 
Sbjct: 82  PQRNIYTWNSVVTGLTKLGFLDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEALCYFA 141

Query: 67  EMPERNVV-------SWTAMICGLAD--------------------------------AG 87
            M +   V       S  +   GL D                                 G
Sbjct: 142 MMHKEGFVLNEYSFASVLSACSGLNDMNKGVQVHSLIAKSPFLSDVYIGSALVDMYSKCG 201

Query: 88  RVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSM----------------- 130
            V +A+++F+EM +RNVVSWNS++    +NG   EA  VF  M                 
Sbjct: 202 NVNDAQRVFDEMGDRNVVSWNSLITCFEQNGPAVEALDVFQMMLESRVEPDEVTLASVIS 261

Query: 131 -----------------PIKN------VISWNAMIAGYVECCMMGEAIVLFEEMEERNVV 167
                             +KN      +I  NA +  Y +C  + EA  +F+ M  RNV+
Sbjct: 262 ACASLSAIKVGQEVHGRVVKNDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMPIRNVI 321

Query: 168 TWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMK--G 225
             TSMISGY  A   +    +F +M  +NVVSW A+I G+  NG ++E+L LF  +K   
Sbjct: 322 AETSMISGYAMAASTKAARLMFTKMAERNVVSWNALIAGYTQNGENEEALSLFCLLKRES 381

Query: 226 ICDNGNN-CNV-QSCNSMINGYIRFGRLEEAQNL-----FDTVPVRDEISWTSMIDGYLS 278
           +C    +  N+ ++C  +    +  G       L     F +    D     S+ID Y+ 
Sbjct: 382 VCPTHYSFANILKACADLAE--LHLGMQAHVHVLKHGFKFQSGEEDDIFVGNSLIDMYVK 439

Query: 279 VGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVL 338
            G V   Y +F  M +RD V+W AMI G  QN    EA  LF EM   G  P + T   +
Sbjct: 440 CGCVEEGYLVFRKMMERDCVSWNAMIIGFAQNGYGNEALELFREMLESGEKPDHITMIGV 499

Query: 339 FGAAGATANIDLGRQIHCVLMKTESESDLILE-NCLISMYAKCGVIDNAYNIFSNM-VSR 396
             A G    ++ GR     + +    + L     C++ +  + G ++ A ++   M +  
Sbjct: 500 LSACGHAGFVEEGRHYFSSMTRDFGVAPLRDHYTCMVDLLGRAGFLEEAKSMIEEMPMQP 559

Query: 397 DLVSWNSMVMGFSHHGLANETLKVFESMLE 426
           D V W S++     H        V E +LE
Sbjct: 560 DSVIWGSLLAACKVHRNITLGKYVAEKLLE 589



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 60/261 (22%), Positives = 108/261 (41%), Gaps = 57/261 (21%)

Query: 352 RQIHCVLMKTESESDLILENCLISMYAKC------------------------------- 380
           R +H  ++K+   +++ ++N LI  Y+KC                               
Sbjct: 40  RYVHASVIKSGFSNEIFIQNRLIDAYSKCGSLEDGRQVFDKMPQRNIYTWNSVVTGLTKL 99

Query: 381 GVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGIL 440
           G +D A ++F +M  RD  +WNSMV GF+ H    E L  F  M + G   N  +F  +L
Sbjct: 100 GFLDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEALCYFAMMHKEGFVLNEYSFASVL 159

Query: 441 SACSHAGLVSRGWELFNAMFDVYKIQPGPEHYV--SMINLLGRAGKIKEAEEFVLRLPFE 498
           SACS    +++G ++ +    + K     + Y+  +++++  + G + +A+     +   
Sbjct: 160 SACSGLNDMNKGVQVHSL---IAKSPFLSDVYIGSALVDMYSKCGNVNDAQRVFDEM--- 213

Query: 499 PDHRI--WGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAA-------- 548
            D  +  W +L+      E N    E      + L+    P  V L ++ +A        
Sbjct: 214 GDRNVVSWNSLITC---FEQNGPAVEALDVFQMMLESRVEPDEVTLASVISACASLSAIK 270

Query: 549 -----SGRHVEEHKLRMDMGL 564
                 GR V+  KLR D+ L
Sbjct: 271 VGQEVHGRVVKNDKLRNDIIL 291


>gi|359488823|ref|XP_002273685.2| PREDICTED: uncharacterized protein LOC100245824 [Vitis vinifera]
          Length = 1984

 Score =  345 bits (885), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 206/630 (32%), Positives = 330/630 (52%), Gaps = 73/630 (11%)

Query: 41  NVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMP 100
           ++V  N M+S ++Q G L +AR LF+EMPERN VSW+A+I GL   GRV E+   FE  P
Sbjct: 86  DLVVSNCMISAYVQWGNLVQARLLFDEMPERNEVSWSALISGLMKYGRVEESMWYFERNP 145

Query: 101 ERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECC----------- 149
            +NVVSW + + G +RNG   EA K+F  +    V   +      V  C           
Sbjct: 146 FQNVVSWTAAISGFVRNGLNFEALKLFFRLLESGVRPNDVTFTSVVRACGELGDFGLGMS 205

Query: 150 -------------------------MMGE---AIVLFEEMEERNVVTWTSMISGYCRAGE 181
                                     MGE   A  +F+ ME+R+VV+WT+++  Y   G+
Sbjct: 206 ILGLVVKAGFEHYLSVSNSLITLSLRMGEIDLARRVFDRMEKRDVVSWTAILDAYVETGD 265

Query: 182 VEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEM--KGICDN---------- 229
           + E   +F  MP +N +SW+AMI  ++ +G+ +E+L LF +M  +G   N          
Sbjct: 266 LREARRIFDEMPERNEISWSAMIARYSQSGYAEEALKLFSKMVQEGFKPNISCFACTLSA 325

Query: 230 --------------------GNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISW 269
                               G + +V   +S+I+ Y + G+ ++ + +FD +  ++ + W
Sbjct: 326 LASLRALSAGINIHGHVTKIGIDKDVFIGSSLIDLYCKCGKPDDGRLVFDLILEKNVVCW 385

Query: 270 TSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVP 329
            SM+ GY   G++     LF  +P+++ V+W  +I+G ++NE   +   +F  +   G  
Sbjct: 386 NSMVGGYSINGRLEETEELFELIPEKNDVSWGTIIAGYLENEQCEKVLEVFNTLLVSGQT 445

Query: 330 PLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNI 389
           P  +TFS +  A  + A++D G  +H  ++K   + D+ +   L  MYAKCG I ++  +
Sbjct: 446 PNKSTFSSVLCACASIASLDKGMNVHGKIIKLGIQYDIFVGTALTDMYAKCGDIGSSKQV 505

Query: 390 FSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESM-LESGTHPNSVTFLGILSACSHAGL 448
           F  M  ++ +SW  M+ G +  G A E+L +FE M   S   PN +  L +L ACSH GL
Sbjct: 506 FERMPEKNEISWTVMIQGLAESGFAVESLILFEEMERTSEVAPNELMLLSVLFACSHCGL 565

Query: 449 VSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALL 508
           V +G   FN+M  VY I+P  +HY  +++LL R+G++ EAEEF+  +PF+P+   W ALL
Sbjct: 566 VDKGLWYFNSMEKVYGIKPKGKHYTCVVDLLSRSGRLYEAEEFIRTIPFQPEANAWAALL 625

Query: 509 GACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVR 568
             C   + + +IAE  AK+L +L   N+  +V+L NIYA++GR ++   +R  M  KG++
Sbjct: 626 SGCKKYK-DEKIAERTAKKLWQLAENNSAGYVLLSNIYASAGRWIDVSNIRKLMREKGLK 684

Query: 569 KVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
           K  GCSW+     +  F S D   +Q  EI
Sbjct: 685 KSGGCSWVEVRNQVHSFYSEDGSHSQSNEI 714



 Score =  195 bits (496), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 143/503 (28%), Positives = 234/503 (46%), Gaps = 84/503 (16%)

Query: 118 GELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYC 177
            E+++  K F+     +++  N MI+ YV+   + +A +LF+EM ERN V+W+++ISG  
Sbjct: 73  AEIDQIVKEFDG---SDLVVSNCMISAYVQWGNLVQARLLFDEMPERNEVSWSALISGLM 129

Query: 178 RAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEM--KGICDNGNNCN- 234
           + G VEE    F R P +NVVSWTA I GF  NG + E+L LF  +   G+  N      
Sbjct: 130 KYGRVEESMWYFERNPFQNVVSWTAAISGFVRNGLNFEALKLFFRLLESGVRPNDVTFTS 189

Query: 235 -VQSC----------------------------NSMINGYIRFGRLEEAQNLFDTVPVRD 265
            V++C                            NS+I   +R G ++ A+ +FD +  RD
Sbjct: 190 VVRACGELGDFGLGMSILGLVVKAGFEHYLSVSNSLITLSLRMGEIDLARRVFDRMEKRD 249

Query: 266 EISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRA 325
            +SWT+++D Y+  G +  A  +F  MP+R+ ++W+AMI+   Q+    EA  LF +M  
Sbjct: 250 VVSWTAILDAYVETGDLREARRIFDEMPERNEISWSAMIARYSQSGYAEEALKLFSKMVQ 309

Query: 326 HGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDN 385
            G  P  + F+    A  +   +  G  IH  + K   + D+ + + LI +Y KCG  D+
Sbjct: 310 EGFKPNISCFACTLSALASLRALSAGINIHGHVTKIGIDKDVFIGSSLIDLYCKCGKPDD 369

Query: 386 AYNIFSNMVSRDLVSWNSMVMGFSHHG---------------------------LANE-- 416
              +F  ++ +++V WNSMV G+S +G                           L NE  
Sbjct: 370 GRLVFDLILEKNVVCWNSMVGGYSINGRLEETEELFELIPEKNDVSWGTIIAGYLENEQC 429

Query: 417 --TLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDV---YKIQPGPEH 471
              L+VF ++L SG  PN  TF  +L AC+    + +G  +   +  +   Y I  G   
Sbjct: 430 EKVLEVFNTLLVSGQTPNKSTFSSVLCACASIASLDKGMNVHGKIIKLGIQYDIFVG--- 486

Query: 472 YVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGAL---LGACGFC-------EGNAEIA 521
             ++ ++  + G I  +++   R+P E +   W  +   L   GF        E     +
Sbjct: 487 -TALTDMYAKCGDIGSSKQVFERMP-EKNEISWTVMIQGLAESGFAVESLILFEEMERTS 544

Query: 522 EHAAKRLLELDPLNAPAHVVLCN 544
           E A   L+ L  L A +H  L +
Sbjct: 545 EVAPNELMLLSVLFACSHCGLVD 567



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 107/383 (27%), Positives = 175/383 (45%), Gaps = 54/383 (14%)

Query: 168 TWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLL-------F 220
           T  S++  +   G + +G          NV+    +  GF+   +    LL+       F
Sbjct: 23  TCVSLLKKFSNQGLITQG----------NVLHAHLIKTGFSSQRYIAIKLLILYLNCRKF 72

Query: 221 IEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVG 280
            E+  I    +  ++   N MI+ Y+++G L +A+ LFD +P R+E+SW+++I G +  G
Sbjct: 73  AEIDQIVKEFDGSDLVVSNCMISAYVQWGNLVQARLLFDEMPERNEVSWSALISGLMKYG 132

Query: 281 QVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFG 340
           +V  + + F   P ++ V+WTA ISG V+N L  EA  LF  +   GV P + TF+ +  
Sbjct: 133 RVEESMWYFERNPFQNVVSWTAAISGFVRNGLNFEALKLFFRLLESGVRPNDVTFTSVVR 192

Query: 341 AAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLV- 399
           A G   +  LG  I  +++K   E  L + N LI++  + G ID A  +F  M  RD+V 
Sbjct: 193 ACGELGDFGLGMSILGLVVKAGFEHYLSVSNSLITLSLRMGEIDLARRVFDRMEKRDVVS 252

Query: 400 ------------------------------SWNSMVMGFSHHGLANETLKVFESMLESGT 429
                                         SW++M+  +S  G A E LK+F  M++ G 
Sbjct: 253 WTAILDAYVETGDLREARRIFDEMPERNEISWSAMIARYSQSGYAEEALKLFSKMVQEGF 312

Query: 430 HPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYV--SMINLLGRAGKIKE 487
            PN   F   LSA +    +S G    N    V KI    + ++  S+I+L  + GK  +
Sbjct: 313 KPNISCFACTLSALASLRALSAG---INIHGHVTKIGIDKDVFIGSSLIDLYCKCGKPDD 369

Query: 488 AEEFVLRLPFEPDHRIWGALLGA 510
               V  L  E +   W +++G 
Sbjct: 370 G-RLVFDLILEKNVVCWNSMVGG 391


>gi|449449306|ref|XP_004142406.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Cucumis sativus]
          Length = 782

 Score =  345 bits (885), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 210/626 (33%), Positives = 335/626 (53%), Gaps = 47/626 (7%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWT 77
           +T Y+K G +  A  +F  MP ++  S+N ++SG+ + G    +RRL  EMP+ + VSWT
Sbjct: 52  MTFYAKTGSLRFAHHVFDEMPLKSTFSWNTLISGYAKQGNFEVSRRLLYEMPDCDPVSWT 111

Query: 78  AMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIR----NGELNEARKVFNSMPIK 133
           A+I G    G    A  +F +M    V      V  ++     N  L+  RK+ +S  +K
Sbjct: 112 AIIVGYNQFGLFDNAIWMFAKMISERVPPSQFTVSNVLSSCAANQTLDIGRKI-HSFVVK 170

Query: 134 -----NVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCL 188
                 V    +++  Y +C     A V+F+ M  +N+ TW ++IS Y ++G+ E     
Sbjct: 171 LGLGSCVPVATSLLNMYAKCGDPVIAKVVFDRMTVKNISTWNALISLYMQSGQFELAASQ 230

Query: 189 FRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMK----------------GICDNGNN 232
           F +MP +++VSW +MI G++  G++ E+L++F +M                   C N   
Sbjct: 231 FEKMPDRDIVSWNSMISGYSQQGYNLEALVIFSKMLNEPSLKPDNFTLASILSACANLEK 290

Query: 233 CNVQS-----------------CNSMINGYIRFGRLEEAQNLFD--TVPVRDEISWTSMI 273
            N+                    N++I+ Y + G +E A+ + +       + I++TS++
Sbjct: 291 LNIGKQIHAYILRAETETSGAVGNALISMYAKSGGVEIARLIVEHNRTSNLNIIAFTSLL 350

Query: 274 DGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNA 333
           DGY  +G V  A  +F+ + DRD VAWTAMI G VQN L+ +A  LF  M   G  P + 
Sbjct: 351 DGYTKLGNVKPAREIFNKLRDRDVVAWTAMIVGYVQNGLWNDALELFRLMVNEGPEPNSY 410

Query: 334 TFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFS-N 392
           T + +   + +   ++ G+QIH   +K    S   + N LI+MYAK G I+ A  +F   
Sbjct: 411 TLAAMLSVSSSLTILEHGKQIHASAIKAGESSTPSVTNALIAMYAKTGNINVAKRVFDLP 470

Query: 393 MVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRG 452
              +++VSW SM+M  + HGL  E + +FE ML  G  P+ +T++G+LSAC+H GLV +G
Sbjct: 471 NGKKEIVSWTSMIMALAQHGLGKEAINLFERMLSVGMKPDHITYVGVLSACTHVGLVEQG 530

Query: 453 WELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACG 512
            + +N M +V++I+P   HY  MI+L GRAG ++EA  F+  +P EPD+  WG+LL +C 
Sbjct: 531 RKYYNMMTEVHEIEPTLSHYACMIDLYGRAGLLQEAYLFIESMPIEPDNIAWGSLLASCK 590

Query: 513 FCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPG 572
               NA++A+ AA+RLL +DP N+ A++ L N+Y+A G+     + R  M  +GVRK  G
Sbjct: 591 I-HKNADLAKVAAERLLLIDPGNSGAYLALANVYSACGKWENAAQTRKLMKDRGVRKEKG 649

Query: 573 CSWLMRNGGIQMFLSGDKIPAQVAEI 598
            SW+     +  F   D I  Q  EI
Sbjct: 650 ISWIHIKNEVHAFGVEDVIHPQKDEI 675



 Score =  148 bits (373), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 115/450 (25%), Positives = 218/450 (48%), Gaps = 25/450 (5%)

Query: 15  TSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVV 74
           TS +  Y+K G    AK +F  M  +N+ ++NA++S ++Q+G+   A   FE+MP+R++V
Sbjct: 181 TSLLNMYAKCGDPVIAKVVFDRMTVKNISTWNALISLYMQSGQFELAASQFEKMPDRDIV 240

Query: 75  SWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNG-----ELNEARK---- 125
           SW +MI G +  G   EA  +F +M     +  ++  +  I +      +LN  ++    
Sbjct: 241 SWNSMISGYSQQGYNLEALVIFSKMLNEPSLKPDNFTLASILSACANLEKLNIGKQIHAY 300

Query: 126 VFNSMPIKNVISWNAMIAGYVEC--CMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVE 183
           +  +    +    NA+I+ Y +     +   IV        N++ +TS++ GY + G V+
Sbjct: 301 ILRAETETSGAVGNALISMYAKSGGVEIARLIVEHNRTSNLNIIAFTSLLDGYTKLGNVK 360

Query: 184 EGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMIN 243
               +F ++  ++VV+WTAMI G+  NG   ++L LF   + + + G   N  +  +M++
Sbjct: 361 PAREIFNKLRDRDVVAWTAMIVGYVQNGLWNDALELF---RLMVNEGPEPNSYTLAAMLS 417

Query: 244 GYIRFGRLEEAQNLFDTVPVRDEISWTSMIDG----YLSVGQVSNAYYLFHNMPD--RDA 297
                  LE  + +  +     E S  S+ +     Y   G ++ A  +F ++P+  ++ 
Sbjct: 418 VSSSLTILEHGKQIHASAIKAGESSTPSVTNALIAMYAKTGNINVAKRVF-DLPNGKKEI 476

Query: 298 VAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCV 357
           V+WT+MI  L Q+ L  EA  LF  M + G+ P + T+  +  A      ++ GR+ + +
Sbjct: 477 VSWTSMIMALAQHGLGKEAINLFERMLSVGMKPDHITYVGVLSACTHVGLVEQGRKYYNM 536

Query: 358 LMKT-ESESDLILENCLISMYAKCGVIDNAYNIFSNM-VSRDLVSWNSMVMGFSHHGLAN 415
           + +  E E  L    C+I +Y + G++  AY    +M +  D ++W S++     H  A+
Sbjct: 537 MTEVHEIEPTLSHYACMIDLYGRAGLLQEAYLFIESMPIEPDNIAWGSLLASCKIHKNAD 596

Query: 416 ETLKVFESML--ESGTHPNSVTFLGILSAC 443
                 E +L  + G     +    + SAC
Sbjct: 597 LAKVAAERLLLIDPGNSGAYLALANVYSAC 626



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 83/252 (32%), Positives = 123/252 (48%), Gaps = 32/252 (12%)

Query: 226 ICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNA 285
           I   G +  V   N+++  Y + G L  A ++FD +P++   SW ++I GY   G    +
Sbjct: 36  IIKKGLHLGVYLMNNLMTFYAKTGSLRFAHHVFDEMPLKSTFSWNTLISGYAKQGNFEVS 95

Query: 286 YYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGAT 345
             L + MPD D V+WTA+I G  Q  LF  A ++F +M +  VPP   T S +  +  A 
Sbjct: 96  RRLLYEMPDCDPVSWTAIIVGYNQFGLFDNAIWMFAKMISERVPPSQFTVSNVLSSCAAN 155

Query: 346 ANIDLGRQIHCVLMKTESESDLILENCLISMYAKCG-------VIDN------------- 385
             +D+GR+IH  ++K    S + +   L++MYAKCG       V D              
Sbjct: 156 QTLDIGRKIHSFVVKLGLGSCVPVATSLLNMYAKCGDPVIAKVVFDRMTVKNISTWNALI 215

Query: 386 -----------AYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESML-ESGTHPNS 433
                      A + F  M  RD+VSWNSM+ G+S  G   E L +F  ML E    P++
Sbjct: 216 SLYMQSGQFELAASQFEKMPDRDIVSWNSMISGYSQQGYNLEALVIFSKMLNEPSLKPDN 275

Query: 434 VTFLGILSACSH 445
            T   ILSAC++
Sbjct: 276 FTLASILSACAN 287



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 110/479 (22%), Positives = 183/479 (38%), Gaps = 145/479 (30%)

Query: 171 SMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNG 230
           ++++ Y + G +   + +F  MP K+  SW  +I G+A  G  + S  L  EM       
Sbjct: 50  NLMTFYAKTGSLRFAHHVFDEMPLKSTFSWNTLISGYAKQGNFEVSRRLLYEMP------ 103

Query: 231 NNCNVQSCNSMINGYIRFGRLEEAQNLF-----DTVP-----VRDEIS------------ 268
            +C+  S  ++I GY +FG  + A  +F     + VP     V + +S            
Sbjct: 104 -DCDPVSWTAIIVGYNQFGLFDNAIWMFAKMISERVPPSQFTVSNVLSSCAANQTLDIGR 162

Query: 269 -----------------WTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTA--------- 302
                             TS+++ Y   G    A  +F  M  ++   W A         
Sbjct: 163 KIHSFVVKLGLGSCVPVATSLLNMYAKCGDPVIAKVVFDRMTVKNISTWNALISLYMQSG 222

Query: 303 ----------------------MISGLVQNELFVEATYLFMEM-RAHGVPPLNATFSVLF 339
                                 MISG  Q    +EA  +F +M     + P N T + + 
Sbjct: 223 QFELAASQFEKMPDRDIVSWNSMISGYSQQGYNLEALVIFSKMLNEPSLKPDNFTLASIL 282

Query: 340 GAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVID--------------- 384
            A      +++G+QIH  +++ E+E+   + N LISMYAK G ++               
Sbjct: 283 SACANLEKLNIGKQIHAYILRAETETSGAVGNALISMYAKSGGVEIARLIVEHNRTSNLN 342

Query: 385 ------------------NAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLE 426
                              A  IF+ +  RD+V+W +M++G+  +GL N+ L++F  M+ 
Sbjct: 343 IIAFTSLLDGYTKLGNVKPAREIFNKLRDRDVVAWTAMIVGYVQNGLWNDALELFRLMVN 402

Query: 427 SGTHPNSVTFLGILSACSHAGLVSRGWEL----------------------------FNA 458
            G  PNS T   +LS  S   ++  G ++                             N 
Sbjct: 403 EGPEPNSYTLAAMLSVSSSLTILEHGKQIHASAIKAGESSTPSVTNALIAMYAKTGNINV 462

Query: 459 MFDVYKIQPGPEHYV---SMINLLGRAGKIKEAE---EFVLRLPFEPDHRIWGALLGAC 511
              V+ +  G +  V   SMI  L + G  KEA    E +L +  +PDH  +  +L AC
Sbjct: 463 AKRVFDLPNGKKEIVSWTSMIMALAQHGLGKEAINLFERMLSVGMKPDHITYVGVLSAC 521



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 32/125 (25%), Positives = 56/125 (44%), Gaps = 31/125 (24%)

Query: 351 GRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNM----------------- 393
           GR +HC ++K      + L N L++ YAK G +  A+++F  M                 
Sbjct: 29  GRSVHCQIIKKGLHLGVYLMNNLMTFYAKTGSLRFAHHVFDEMPLKSTFSWNTLISGYAK 88

Query: 394 -----VSR---------DLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGI 439
                VSR         D VSW ++++G++  GL +  + +F  M+     P+  T   +
Sbjct: 89  QGNFEVSRRLLYEMPDCDPVSWTAIIVGYNQFGLFDNAIWMFAKMISERVPPSQFTVSNV 148

Query: 440 LSACS 444
           LS+C+
Sbjct: 149 LSSCA 153


>gi|115461705|ref|NP_001054452.1| Os05g0112900 [Oryza sativa Japonica Group]
 gi|45680436|gb|AAS75237.1| unknown protein [Oryza sativa Japonica Group]
 gi|113578003|dbj|BAF16366.1| Os05g0112900 [Oryza sativa Japonica Group]
 gi|215715346|dbj|BAG95097.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|215736909|dbj|BAG95838.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222629956|gb|EEE62088.1| hypothetical protein OsJ_16872 [Oryza sativa Japonica Group]
          Length = 661

 Score =  345 bits (885), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 202/570 (35%), Positives = 308/570 (54%), Gaps = 15/570 (2%)

Query: 33  LFQLMPQRN-VVSYNAMLSGFLQNGRLSEARRLFEEMPE--RNVVSWTAMICGLADAGRV 89
           +F  MP+R+  V+Y AM+   L +  L  A  L+   P   R +   T M+ G   AG+V
Sbjct: 80  MFDGMPRRDDAVAYAAMVGIHLWDRDLPHAEALYRAAPPDCRGIHLDTVMLDGYVKAGQV 139

Query: 90  CEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECC 149
             AR+LF+ M  +NVV+W  MV G  R G ++EAR++F+ MP +NV SW  M+ GY    
Sbjct: 140 DRARRLFDGMAVKNVVAWTCMVSGYCRAGLVDEARRLFDLMPYRNVFSWTTMVQGYAHNG 199

Query: 150 MMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAW 209
           M+ EA  +F++M ERNVV WT M+  Y   G ++E   LF RMP+ N  SW AM  G   
Sbjct: 200 MLREAREMFDKMPERNVVAWTVMVKAYVDNGCIQEALELFNRMPQMNSYSWNAMATGLMS 259

Query: 210 NGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISW 269
            G   +++ LF +M        + NV S   M+ G  + G +  A+  FD +P +D  +W
Sbjct: 260 AGKVDDAVQLFDKMP-------HKNVVSWTIMVTGLAQNGFVSRAREFFDRMPKKDIPAW 312

Query: 270 TSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVP 329
            SMI  Y + GQV++A  LF  MP ++ V W  +I G   N L  EA  LF+ M    V 
Sbjct: 313 NSMITAYTNDGQVNDAQRLFDIMPSKNLVTWNIIIDGYSMNNLKDEALRLFLLMLRSAVS 372

Query: 330 PLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNI 389
           P + T   +   + +T  +   RQIH +  K   + +  L N L+SMY++ G + +A+  
Sbjct: 373 PDSTTLISVLVVSESTMEV---RQIHGLSTKLGYQPETNLGNTLVSMYSRSGDLSSAWLA 429

Query: 390 FSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLV 449
           F  +  +D ++W SM+   ++HG A   L+ F  ML  G  P+S TF  +LSAC+H GLV
Sbjct: 430 FRRLNEKDAITWTSMIQALANHGCAPCALQGFAQMLRCGYKPSSTTFTAVLSACNHVGLV 489

Query: 450 SRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEP-DHRIWGALL 508
            +G ++F ++  VY + P  EHY  +++LLGRAG ++EA+E V  +  +  D  I G LL
Sbjct: 490 EKGRKIFKSISHVYGLGPTIEHYSCLVDLLGRAGYVREAKEVVDGMQRDMCDEAILGTLL 549

Query: 509 GACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVR 568
           G+C       E+     + L+++DP  +  + +L N++A+ G   E   +   M    V+
Sbjct: 550 GSC-MTHNEVEVGRAVGEDLVKIDPSGSGGYTLLANVFASGGMWNEVASVWKIMKGSKVK 608

Query: 569 KVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
           K PG S +  N    +F S D++ +Q  EI
Sbjct: 609 KTPGFSQIEVNARNHVFYSRDQMHSQRTEI 638



 Score =  224 bits (570), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 123/390 (31%), Positives = 205/390 (52%), Gaps = 6/390 (1%)

Query: 11  VVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPE 70
           VV  T  ++ Y + G +DEA+ LF LMP RNV S+  M+ G+  NG L EAR +F++MPE
Sbjct: 154 VVAWTCMVSGYCRAGLVDEARRLFDLMPYRNVFSWTTMVQGYAHNGMLREAREMFDKMPE 213

Query: 71  RNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSM 130
           RNVV+WT M+    D G + EA +LF  MP+ N  SWN+M  GL+  G++++A ++F+ M
Sbjct: 214 RNVVAWTVMVKAYVDNGCIQEALELFNRMPQMNSYSWNAMATGLMSAGKVDDAVQLFDKM 273

Query: 131 PIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFR 190
           P KNV+SW  M+ G  +   +  A   F+ M ++++  W SMI+ Y   G+V +   LF 
Sbjct: 274 PHKNVVSWTIMVTGLAQNGFVSRAREFFDRMPKKDIPAWNSMITAYTNDGQVNDAQRLFD 333

Query: 191 RMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGR 250
            MP KN+V+W  +I G++ N    E+L LF+ M     + ++  + S   +    +    
Sbjct: 334 IMPSKNLVTWNIIIDGYSMNNLKDEALRLFLLMLRSAVSPDSTTLISVLVVSESTM---E 390

Query: 251 LEEAQNLFDTVPVRDEISW-TSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQ 309
           + +   L   +  + E +   +++  Y   G +S+A+  F  + ++DA+ WT+MI  L  
Sbjct: 391 VRQIHGLSTKLGYQPETNLGNTLVSMYSRSGDLSSAWLAFRRLNEKDAITWTSMIQALAN 450

Query: 310 NELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLIL 369
           +     A   F +M   G  P + TF+ +  A      ++ GR+I   +         I 
Sbjct: 451 HGCAPCALQGFAQMLRCGYKPSSTTFTAVLSACNHVGLVEKGRKIFKSISHVYGLGPTIE 510

Query: 370 E-NCLISMYAKCGVIDNAYNIFSNMVSRDL 398
             +CL+ +  + G +  A  +   M  RD+
Sbjct: 511 HYSCLVDLLGRAGYVREAKEVVDGM-QRDM 539


>gi|168023826|ref|XP_001764438.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|54695178|dbj|BAD67154.1| PpPPR_91 [Physcomitrella patens]
 gi|162684302|gb|EDQ70705.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 868

 Score =  345 bits (884), Expect = 5e-92,   Method: Compositional matrix adjust.
 Identities = 191/568 (33%), Positives = 322/568 (56%), Gaps = 21/568 (3%)

Query: 39  QRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEE 98
           + +V    A+++ + + G +S A  +F +M ERNVVSWTA+I   A   ++ EA +L+E+
Sbjct: 189 ETDVAVATALITMYSKCGEISVACEVFHKMTERNVVSWTAIIQANAQHRKLNEAFELYEQ 248

Query: 99  MPER----NVVSWNSMVVGLIRNGELNEARKVFNSMPIK----NVISWNAMIAGYVECCM 150
           M +     N V++ S++        LN  R++ + +  +    ++I  NA+I  Y +C  
Sbjct: 249 MLQAGISPNAVTFVSLLNSCNTPEALNRGRRIHSHISERGLETDMIVANALITMYCKCNS 308

Query: 151 MGEAIVLFEEMEERNVVTWTSMISGYCRAG-----EVEEGYCLFRRMPRK----NVVSWT 201
           + EA  +F+ M +R+V++W++MI+GY ++G      ++E + L  RM R+    N V++ 
Sbjct: 309 VQEAREIFDRMSKRDVISWSAMIAGYAQSGYKDKESIDEVFQLLERMRREGVFPNKVTFM 368

Query: 202 AMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTV 261
           +++     +G  ++   +  E+  +   G   +     ++ N Y + G + EA+ +F  +
Sbjct: 369 SILRACTAHGALEQGRQIHAELSKV---GFELDRSLQTAIFNMYAKCGSIYEAEQVFSKM 425

Query: 262 PVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFM 321
             ++ ++WTS +  Y+  G +S+A  +F  MP R+ V+W  MI+G  QN   V+   L  
Sbjct: 426 ANKNVVAWTSFLSMYIKCGDLSSAEKVFSEMPTRNVVSWNLMIAGYAQNGDIVKVFELLS 485

Query: 322 EMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCG 381
            M+A G  P   T   +  A GA A ++ G+ +H   +K   ESD ++   LI MY+KCG
Sbjct: 486 SMKAEGFQPDRVTVITILEACGALAGLERGKLVHAEAVKLGLESDTVVATSLIGMYSKCG 545

Query: 382 VIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILS 441
            +  A  +F  M +RD V+WN+M+ G+  HG   E + +F+ ML+    PN +T   ++S
Sbjct: 546 QVAEARTVFDKMSNRDTVAWNAMLAGYGQHGDGLEAVDLFKRMLKERVSPNEITLTAVIS 605

Query: 442 ACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDH 501
           ACS AGLV  G E+F  M + +K+ P  +HY  M++LLGRAG+++EAEEF+  +P EPD 
Sbjct: 606 ACSRAGLVQEGREIFRMMQEDFKMTPRKQHYGCMVDLLGRAGRLQEAEEFIQSMPCEPDI 665

Query: 502 RIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMD 561
            +W ALLGAC     N ++AE AA  +LEL+P  A  ++ L NIYA +GR  +  K+R  
Sbjct: 666 SVWHALLGACK-SHNNVQLAERAAHHILELEPSYASVYITLSNIYAQAGRWDDSTKVRRV 724

Query: 562 MGLKGVRKVPGCSWLMRNGGIQMFLSGD 589
           M  +G++K  G S +  +G I  F++ D
Sbjct: 725 MDDRGLKKDRGESSIEIDGRIHTFVAED 752



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 140/565 (24%), Positives = 251/565 (44%), Gaps = 79/565 (13%)

Query: 31  KALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVC 90
           K L +L  + ++   N++++ + +   ++ A ++F  M  R+VV+W++MI   A      
Sbjct: 80  KQLDELGVEIDIYLGNSLINFYSKFEDVASAEQVFRRMTLRDVVTWSSMIAAYAGNNHPA 139

Query: 91  EARKLFEEMPERNV----VSWNSMVVGLIRNGELNEARKVFNSMPI----KNVISWNAMI 142
           +A   FE M + N+    +++ S++        L + RK+   +       +V    A+I
Sbjct: 140 KAFDTFERMTDANIEPNRITFLSILKACNNYSILEKGRKIHTIVKAMGMETDVAVATALI 199

Query: 143 AGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRK----NVV 198
             Y +C  +  A  +F +M ERNVV+WT++I    +  ++ E + L+ +M +     N V
Sbjct: 200 TMYSKCGEISVACEVFHKMTERNVVSWTAIIQANAQHRKLNEAFELYEQMLQAGISPNAV 259

Query: 199 SWTAMIGGFAWNGFHKESLLLFIEMKG-ICDNGNNCNVQSCNSMINGYIRFGRLEEAQNL 257
           ++ +++          E+L     +   I + G   ++   N++I  Y +   ++EA+ +
Sbjct: 260 TFVSLLNSCNT----PEALNRGRRIHSHISERGLETDMIVANALITMYCKCNSVQEAREI 315

Query: 258 FDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEAT 317
           FD +  RD ISW++MI GY   G             D++++           +E+F    
Sbjct: 316 FDRMSKRDVISWSAMIAGYAQSG-----------YKDKESI-----------DEVF---- 349

Query: 318 YLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMY 377
            L   MR  GV P   TF  +  A  A   ++ GRQIH  L K   E D  L+  + +MY
Sbjct: 350 QLLERMRREGVFPNKVTFMSILRACTAHGALEQGRQIHAELSKVGFELDRSLQTAIFNMY 409

Query: 378 AKCGVI-------------------------------DNAYNIFSNMVSRDLVSWNSMVM 406
           AKCG I                                +A  +FS M +R++VSWN M+ 
Sbjct: 410 AKCGSIYEAEQVFSKMANKNVVAWTSFLSMYIKCGDLSSAEKVFSEMPTRNVVSWNLMIA 469

Query: 407 GFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQ 466
           G++ +G   +  ++  SM   G  P+ VT + IL AC     + RG +L +A      ++
Sbjct: 470 GYAQNGDIVKVFELLSSMKAEGFQPDRVTVITILEACGALAGLERG-KLVHAEAVKLGLE 528

Query: 467 PGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAK 526
                  S+I +  + G++ EA     ++    D   W A+L   G   G+   A    K
Sbjct: 529 SDTVVATSLIGMYSKCGQVAEARTVFDKMS-NRDTVAWNAMLAGYGQ-HGDGLEAVDLFK 586

Query: 527 RLLELDPLNAPAHVVLCNIYAASGR 551
           R+L+     +P  + L  + +A  R
Sbjct: 587 RMLK--ERVSPNEITLTAVISACSR 609



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 109/417 (26%), Positives = 185/417 (44%), Gaps = 57/417 (13%)

Query: 201 TAMIGGFAWN----GFHKESLLLF--IEMKGICDNGNN--CNVQSCNSMINGYIRFGRLE 252
           T++ GG  W     G  +E++ L   I+ +G+  N N   C ++ C        RF   +
Sbjct: 21  TSVSGGEVWRLCKAGRLREAIQLLGIIKQRGLLVNSNTYGCVIEHCAKAR----RFEDGK 76

Query: 253 EAQNLFDTVPVRDEISW-TSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNE 311
                 D + V  +I    S+I+ Y     V++A  +F  M  RD V W++MI+    N 
Sbjct: 77  MVHKQLDELGVEIDIYLGNSLINFYSKFEDVASAEQVFRRMTLRDVVTWSSMIAAYAGNN 136

Query: 312 LFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILEN 371
              +A   F  M    + P   TF  +  A    + ++ GR+IH ++     E+D+ +  
Sbjct: 137 HPAKAFDTFERMTDANIEPNRITFLSILKACNNYSILEKGRKIHTIVKAMGMETDVAVAT 196

Query: 372 CLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHP 431
            LI+MY+KCG I  A  +F  M  R++VSW +++   + H   NE  +++E ML++G  P
Sbjct: 197 ALITMYSKCGEISVACEVFHKMTERNVVSWTAIIQANAQHRKLNEAFELYEQMLQAGISP 256

Query: 432 NSVTFLGILSACS-----------HAGLVSRGWE----LFNAMFDVY----KIQPGPE-- 470
           N+VTF+ +L++C+           H+ +  RG E    + NA+  +Y     +Q   E  
Sbjct: 257 NAVTFVSLLNSCNTPEALNRGRRIHSHISERGLETDMIVANALITMYCKCNSVQEAREIF 316

Query: 471 ---------HYVSMINLLGRAG-----KIKEAEEFVLRLPFE---PDHRIWGALLGAC-- 511
                     + +MI    ++G      I E  + + R+  E   P+   + ++L AC  
Sbjct: 317 DRMSKRDVISWSAMIAGYAQSGYKDKESIDEVFQLLERMRREGVFPNKVTFMSILRACTA 376

Query: 512 -GFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGV 567
            G  E   +I    +K   ELD         + N+YA  G   E  ++   M  K V
Sbjct: 377 HGALEQGRQIHAELSKVGFELDR---SLQTAIFNMYAKCGSIYEAEQVFSKMANKNV 430



 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 89/293 (30%), Positives = 148/293 (50%), Gaps = 19/293 (6%)

Query: 15  TSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVV 74
           T+    Y+K G I EA+ +F  M  +NVV++ + LS +++ G LS A ++F EMP RNVV
Sbjct: 403 TAIFNMYAKCGSIYEAEQVFSKMANKNVVAWTSFLSMYIKCGDLSSAEKVFSEMPTRNVV 462

Query: 75  SWTAMICGLADAGRVCEARKLFEEM------PER----NVVSWNSMVVGLIRNGELNEAR 124
           SW  MI G A  G + +  +L   M      P+R     ++     + GL R G+L  A 
Sbjct: 463 SWNLMIAGYAQNGDIVKVFELLSSMKAEGFQPDRVTVITILEACGALAGLER-GKLVHAE 521

Query: 125 KVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEE 184
            V   +    V++  ++I  Y +C  + EA  +F++M  R+ V W +M++GY + G+  E
Sbjct: 522 AVKLGLESDTVVA-TSLIGMYSKCGQVAEARTVFDKMSNRDTVAWNAMLAGYGQHGDGLE 580

Query: 185 GYCLFRRMPRKNV----VSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNS 240
              LF+RM ++ V    ++ TA+I   +  G  +E   +F  M+   D       Q    
Sbjct: 581 AVDLFKRMLKERVSPNEITLTAVISACSRAGLVQEGREIFRMMQE--DFKMTPRKQHYGC 638

Query: 241 MINGYIRFGRLEEAQNLFDTVPVRDEIS-WTSMIDGYLSVGQVSNAYYLFHNM 292
           M++   R GRL+EA+    ++P   +IS W +++    S   V  A    H++
Sbjct: 639 MVDLLGRAGRLQEAEEFIQSMPCEPDISVWHALLGACKSHNNVQLAERAAHHI 691



 Score = 75.5 bits (184), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 66/207 (31%), Positives = 103/207 (49%), Gaps = 21/207 (10%)

Query: 8   KSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEE 67
           +S  V  TS I  YSK G + EA+ +F  M  R+ V++NAML+G+ Q+G   EA  LF+ 
Sbjct: 528 ESDTVVATSLIGMYSKCGQVAEARTVFDKMSNRDTVAWNAMLAGYGQHGDGLEAVDLFKR 587

Query: 68  M-PER---NVVSWTAMICGLADAGRVCEARKLFEEMPERNVVS-----WNSMVVGLIRNG 118
           M  ER   N ++ TA+I   + AG V E R++F  M E   ++     +  MV  L R G
Sbjct: 588 MLKERVSPNEITLTAVISACSRAGLVQEGREIFRMMQEDFKMTPRKQHYGCMVDLLGRAG 647

Query: 119 ELNEARKVFNSMPIKNVIS-WNAMIAGYVECCMMGEAIVLFE-------EMEERNVVTWT 170
            L EA +   SMP +  IS W+A++      C     + L E       E+E      + 
Sbjct: 648 RLQEAEEFIQSMPCEPDISVWHALLGA----CKSHNNVQLAERAAHHILELEPSYASVYI 703

Query: 171 SMISGYCRAGEVEEGYCLFRRMPRKNV 197
           ++ + Y +AG  ++   + R M  + +
Sbjct: 704 TLSNIYAQAGRWDDSTKVRRVMDDRGL 730


>gi|449487256|ref|XP_004157540.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Cucumis sativus]
          Length = 782

 Score =  344 bits (883), Expect = 6e-92,   Method: Compositional matrix adjust.
 Identities = 210/626 (33%), Positives = 334/626 (53%), Gaps = 47/626 (7%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWT 77
           +T Y+K G +  A  +F  MP ++  S+N ++SG+ + G    +RRL  EMP+ + VSWT
Sbjct: 52  MTFYAKTGSLRFAHHVFDEMPLKSTFSWNTLISGYAKQGNFEVSRRLLYEMPDCDPVSWT 111

Query: 78  AMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIR----NGELNEARKVFNSMPIK 133
           A+I G    G    A  +F +M    V      V  ++     N  L+  RK+ +S  +K
Sbjct: 112 AIIVGYNQFGLFDNAIWMFAKMISERVPPSQFTVSNVLSSCAANQTLDIGRKI-HSFVVK 170

Query: 134 -----NVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCL 188
                 V    +++  Y +C     A V+F+ M  +N+ TW ++IS Y ++G+ E     
Sbjct: 171 LGLGSCVPVATSLLNMYAKCGDPVIAKVVFDRMTVKNISTWNALISLYMQSGQFELAASQ 230

Query: 189 FRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMK----------------GICDNGNN 232
           F +MP +++VSW +MI G++  G++ E+L +F +M                   C N   
Sbjct: 231 FEKMPDRDIVSWNSMISGYSQQGYNLEALAIFSKMLNEPSLKPDNFTLASILSACANLEK 290

Query: 233 CNVQS-----------------CNSMINGYIRFGRLEEAQNLFD--TVPVRDEISWTSMI 273
            N+                    N++I+ Y + G +E A+ + +       + I++TS++
Sbjct: 291 LNIGKQIHAYILRAETETSGAVGNALISMYAKSGGVEIARLIVEHNRTSNLNIIAFTSLL 350

Query: 274 DGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNA 333
           DGY  +G V  A  +F+ + DRD VAWTAMI G VQN L+ +A  LF  M   G  P + 
Sbjct: 351 DGYTKLGNVKPAREIFNKLRDRDVVAWTAMIVGYVQNGLWNDALELFRLMVNEGPEPNSY 410

Query: 334 TFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFS-N 392
           T + +   + +   ++ G+QIH   +K    S   + N LI+MYAK G I+ A  +F   
Sbjct: 411 TLAAMLSVSSSLTILEHGKQIHASAIKAGESSTPSVTNALIAMYAKTGNINVAKRVFDLP 470

Query: 393 MVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRG 452
              +++VSW SM+M  + HGL  E + +FE ML  G  P+ +T++G+LSAC+H GLV +G
Sbjct: 471 NGKKEIVSWTSMIMALAQHGLGKEAINLFERMLSVGMKPDHITYVGVLSACTHVGLVEQG 530

Query: 453 WELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACG 512
            + +N M +V++I+P   HY  MI+L GRAG ++EA  F+  +P EPD+  WG+LL +C 
Sbjct: 531 RKYYNMMTEVHEIEPTLSHYACMIDLYGRAGLLQEAYLFIESMPIEPDNIAWGSLLASCK 590

Query: 513 FCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPG 572
               NA++A+ AA+RLL +DP N+ A++ L N+Y+A G+     + R  M  +GVRK  G
Sbjct: 591 I-HKNADLAKVAAERLLLIDPGNSGAYLALANVYSACGKWENAAQTRKLMKDRGVRKEKG 649

Query: 573 CSWLMRNGGIQMFLSGDKIPAQVAEI 598
            SW+     +  F   D I  Q  EI
Sbjct: 650 ISWIHIKNEVHAFGVEDVIHPQKDEI 675



 Score =  149 bits (375), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 115/450 (25%), Positives = 218/450 (48%), Gaps = 25/450 (5%)

Query: 15  TSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVV 74
           TS +  Y+K G    AK +F  M  +N+ ++NA++S ++Q+G+   A   FE+MP+R++V
Sbjct: 181 TSLLNMYAKCGDPVIAKVVFDRMTVKNISTWNALISLYMQSGQFELAASQFEKMPDRDIV 240

Query: 75  SWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNG-----ELNEARK---- 125
           SW +MI G +  G   EA  +F +M     +  ++  +  I +      +LN  ++    
Sbjct: 241 SWNSMISGYSQQGYNLEALAIFSKMLNEPSLKPDNFTLASILSACANLEKLNIGKQIHAY 300

Query: 126 VFNSMPIKNVISWNAMIAGYVEC--CMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVE 183
           +  +    +    NA+I+ Y +     +   IV        N++ +TS++ GY + G V+
Sbjct: 301 ILRAETETSGAVGNALISMYAKSGGVEIARLIVEHNRTSNLNIIAFTSLLDGYTKLGNVK 360

Query: 184 EGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMIN 243
               +F ++  ++VV+WTAMI G+  NG   ++L LF   + + + G   N  +  +M++
Sbjct: 361 PAREIFNKLRDRDVVAWTAMIVGYVQNGLWNDALELF---RLMVNEGPEPNSYTLAAMLS 417

Query: 244 GYIRFGRLEEAQNLFDTVPVRDEISWTSMIDG----YLSVGQVSNAYYLFHNMPD--RDA 297
                  LE  + +  +     E S  S+ +     Y   G ++ A  +F ++P+  ++ 
Sbjct: 418 VSSSLTILEHGKQIHASAIKAGESSTPSVTNALIAMYAKTGNINVAKRVF-DLPNGKKEI 476

Query: 298 VAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCV 357
           V+WT+MI  L Q+ L  EA  LF  M + G+ P + T+  +  A      ++ GR+ + +
Sbjct: 477 VSWTSMIMALAQHGLGKEAINLFERMLSVGMKPDHITYVGVLSACTHVGLVEQGRKYYNM 536

Query: 358 LMKT-ESESDLILENCLISMYAKCGVIDNAYNIFSNM-VSRDLVSWNSMVMGFSHHGLAN 415
           + +  E E  L    C+I +Y + G++  AY    +M +  D ++W S++     H  A+
Sbjct: 537 MTEVHEIEPTLSHYACMIDLYGRAGLLQEAYLFIESMPIEPDNIAWGSLLASCKIHKNAD 596

Query: 416 ETLKVFESML--ESGTHPNSVTFLGILSAC 443
                 E +L  + G     +    + SAC
Sbjct: 597 LAKVAAERLLLIDPGNSGAYLALANVYSAC 626



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 83/252 (32%), Positives = 123/252 (48%), Gaps = 32/252 (12%)

Query: 226 ICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNA 285
           I   G +  V   N+++  Y + G L  A ++FD +P++   SW ++I GY   G    +
Sbjct: 36  IIKKGLHLGVYLMNNLMTFYAKTGSLRFAHHVFDEMPLKSTFSWNTLISGYAKQGNFEVS 95

Query: 286 YYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGAT 345
             L + MPD D V+WTA+I G  Q  LF  A ++F +M +  VPP   T S +  +  A 
Sbjct: 96  RRLLYEMPDCDPVSWTAIIVGYNQFGLFDNAIWMFAKMISERVPPSQFTVSNVLSSCAAN 155

Query: 346 ANIDLGRQIHCVLMKTESESDLILENCLISMYAKCG-------VIDN------------- 385
             +D+GR+IH  ++K    S + +   L++MYAKCG       V D              
Sbjct: 156 QTLDIGRKIHSFVVKLGLGSCVPVATSLLNMYAKCGDPVIAKVVFDRMTVKNISTWNALI 215

Query: 386 -----------AYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESML-ESGTHPNS 433
                      A + F  M  RD+VSWNSM+ G+S  G   E L +F  ML E    P++
Sbjct: 216 SLYMQSGQFELAASQFEKMPDRDIVSWNSMISGYSQQGYNLEALAIFSKMLNEPSLKPDN 275

Query: 434 VTFLGILSACSH 445
            T   ILSAC++
Sbjct: 276 FTLASILSACAN 287



 Score =  105 bits (263), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 110/479 (22%), Positives = 183/479 (38%), Gaps = 145/479 (30%)

Query: 171 SMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNG 230
           ++++ Y + G +   + +F  MP K+  SW  +I G+A  G  + S  L  EM       
Sbjct: 50  NLMTFYAKTGSLRFAHHVFDEMPLKSTFSWNTLISGYAKQGNFEVSRRLLYEMP------ 103

Query: 231 NNCNVQSCNSMINGYIRFGRLEEAQNLF-----DTVP-----VRDEIS------------ 268
            +C+  S  ++I GY +FG  + A  +F     + VP     V + +S            
Sbjct: 104 -DCDPVSWTAIIVGYNQFGLFDNAIWMFAKMISERVPPSQFTVSNVLSSCAANQTLDIGR 162

Query: 269 -----------------WTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTA--------- 302
                             TS+++ Y   G    A  +F  M  ++   W A         
Sbjct: 163 KIHSFVVKLGLGSCVPVATSLLNMYAKCGDPVIAKVVFDRMTVKNISTWNALISLYMQSG 222

Query: 303 ----------------------MISGLVQNELFVEATYLFMEM-RAHGVPPLNATFSVLF 339
                                 MISG  Q    +EA  +F +M     + P N T + + 
Sbjct: 223 QFELAASQFEKMPDRDIVSWNSMISGYSQQGYNLEALAIFSKMLNEPSLKPDNFTLASIL 282

Query: 340 GAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVID--------------- 384
            A      +++G+QIH  +++ E+E+   + N LISMYAK G ++               
Sbjct: 283 SACANLEKLNIGKQIHAYILRAETETSGAVGNALISMYAKSGGVEIARLIVEHNRTSNLN 342

Query: 385 ------------------NAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLE 426
                              A  IF+ +  RD+V+W +M++G+  +GL N+ L++F  M+ 
Sbjct: 343 IIAFTSLLDGYTKLGNVKPAREIFNKLRDRDVVAWTAMIVGYVQNGLWNDALELFRLMVN 402

Query: 427 SGTHPNSVTFLGILSACSHAGLVSRGWEL----------------------------FNA 458
            G  PNS T   +LS  S   ++  G ++                             N 
Sbjct: 403 EGPEPNSYTLAAMLSVSSSLTILEHGKQIHASAIKAGESSTPSVTNALIAMYAKTGNINV 462

Query: 459 MFDVYKIQPGPEHYV---SMINLLGRAGKIKEAE---EFVLRLPFEPDHRIWGALLGAC 511
              V+ +  G +  V   SMI  L + G  KEA    E +L +  +PDH  +  +L AC
Sbjct: 463 AKRVFDLPNGKKEIVSWTSMIMALAQHGLGKEAINLFERMLSVGMKPDHITYVGVLSAC 521



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 85/357 (23%), Positives = 163/357 (45%), Gaps = 62/357 (17%)

Query: 7   PKSLVVHLTSSITKYSKRGFIDEAKALFQLM-------PQ-------------------- 39
           P   +V   S I+ YS++G+  EA A+F  M       P                     
Sbjct: 235 PDRDIVSWNSMISGYSQQGYNLEALAIFSKMLNEPSLKPDNFTLASILSACANLEKLNIG 294

Query: 40  RNVVSY-------------NAMLSGFLQNGRLSEARRLFEE--MPERNVVSWTAMICGLA 84
           + + +Y             NA++S + ++G +  AR + E       N++++T+++ G  
Sbjct: 295 KQIHAYILRAETETSGAVGNALISMYAKSGGVEIARLIVEHNRTSNLNIIAFTSLLDGYT 354

Query: 85  DAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVF----NSMPIKNVISWNA 140
             G V  AR++F ++ +R+VV+W +M+VG ++NG  N+A ++F    N  P  N  +  A
Sbjct: 355 KLGNVKPAREIFNKLRDRDVVAWTAMIVGYVQNGLWNDALELFRLMVNEGPEPNSYTLAA 414

Query: 141 MIAGYVECCMM--GEAI--VLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMP--R 194
           M++      ++  G+ I     +  E        ++I+ Y + G +     +F  +P  +
Sbjct: 415 MLSVSSSLTILEHGKQIHASAIKAGESSTPSVTNALIAMYAKTGNINVAKRVF-DLPNGK 473

Query: 195 KNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEA 254
           K +VSWT+MI   A +G  KE++ LF  M  +   G   +  +   +++     G +E+ 
Sbjct: 474 KEIVSWTSMIMALAQHGLGKEAINLFERMLSV---GMKPDHITYVGVLSACTHVGLVEQG 530

Query: 255 QNLFDTVPVRDEIS-----WTSMIDGYLSVGQVSNAYYLFHNMP-DRDAVAWTAMIS 305
           +  ++ +    EI      +  MID Y   G +  AY    +MP + D +AW ++++
Sbjct: 531 RKYYNMMTEVHEIEPTLSHYACMIDLYGRAGLLQEAYLFIESMPIEPDNIAWGSLLA 587



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 32/125 (25%), Positives = 56/125 (44%), Gaps = 31/125 (24%)

Query: 351 GRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNM----------------- 393
           GR +HC ++K      + L N L++ YAK G +  A+++F  M                 
Sbjct: 29  GRSVHCQIIKKGLHLGVYLMNNLMTFYAKTGSLRFAHHVFDEMPLKSTFSWNTLISGYAK 88

Query: 394 -----VSR---------DLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGI 439
                VSR         D VSW ++++G++  GL +  + +F  M+     P+  T   +
Sbjct: 89  QGNFEVSRRLLYEMPDCDPVSWTAIIVGYNQFGLFDNAIWMFAKMISERVPPSQFTVSNV 148

Query: 440 LSACS 444
           LS+C+
Sbjct: 149 LSSCA 153


>gi|302784086|ref|XP_002973815.1| hypothetical protein SELMODRAFT_100620 [Selaginella moellendorffii]
 gi|300158147|gb|EFJ24770.1| hypothetical protein SELMODRAFT_100620 [Selaginella moellendorffii]
          Length = 564

 Score =  344 bits (882), Expect = 8e-92,   Method: Compositional matrix adjust.
 Identities = 180/541 (33%), Positives = 290/541 (53%), Gaps = 11/541 (2%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWT 77
           I  Y++ G I  A+  F  MP R  V++N +L+ + + G + E+  LF+ MPER +V+W 
Sbjct: 30  ILAYAQNGQIPLARDAFDRMPARTSVTWNTLLTAYARAGHMPESELLFKNMPERGIVTWN 89

Query: 78  AMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVIS 137
           +++   A  G +  A+ LF+ MPER   SWN M+ G + N     A   F  MP ++  S
Sbjct: 90  SIVEAYAHNGLLARAKTLFDAMPERTAYSWNIMIQGYVDNSRFQSALAAFERMPQRSTAS 149

Query: 138 WNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNV 197
           WN ++AG V    + EA  +FE    R++    +M+S YC+AG +     +F ++P +N 
Sbjct: 150 WNTVLAGLVAAGHLREAERVFEATPHRDLHAHNTMVSAYCKAGALHRARDVFDKVPHRNF 209

Query: 198 VSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNL 257
           V W A++  +  NG            K   D     +V S N+M+ G+   G+L++A+ L
Sbjct: 210 VCWNALLQAYVQNG-------QLSTAKATFDVSPCRDVASWNAMMQGFAEEGQLQDAELL 262

Query: 258 FDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEAT 317
           F  +P RD +S T+++  Y   G ++ A  LF  +P RD +AW AMI+   Q  L ++A 
Sbjct: 263 FQRMPKRDVVSATALVVAYARHGHITQARALFDGLPVRDTIAWNAMIAAYTQAGLALDAL 322

Query: 318 YLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTE-SESDLILENCLISM 376
            LF  M    VP  +A+ S    A    A +  G+ IH  ++ +E   S+ I+   LI+M
Sbjct: 323 NLFKVMDLEAVPLDHASLSSALDACATLAALREGKLIHSSILHSELFHSNTIVATSLITM 382

Query: 377 YAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTF 436
           YA+C  +  A   F  +  RD+  WN+MV  +S +GL  E+L++F +M   G  P S +F
Sbjct: 383 YARCARLCEAKRAFDGLTKRDVPCWNTMVAAYSQNGLFQESLEIFRTMEVEGHKPQSASF 442

Query: 437 LGILSACSHAGLVSRGWELFNA--MFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLR 494
           + IL++CSH GL++     F A  + + + + P  +HY+ +I+LL R G + +AEE +  
Sbjct: 443 ICILTSCSHGGLLTEALWYFTALQLVEDHGVVPTVDHYICIIDLLARIGWLHQAEELLNT 502

Query: 495 LPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVE 554
           +PFEPD   W ALLG C   + + +     AK + +L P     +V+L N +A++    E
Sbjct: 503 MPFEPDSVAWMALLGGCK-GQNDVQTGARVAKHVFQLQPRTPALYVLLSNTHASNAVEDE 561

Query: 555 E 555
           E
Sbjct: 562 E 562



 Score = 43.9 bits (102), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 32/115 (27%), Positives = 52/115 (45%), Gaps = 35/115 (30%)

Query: 376 MYAKCGVIDNA--------------YNI-----------------FSNMVSRDLVSWNSM 404
           MY  CG +D+A              +NI                 F  M +R  V+WN++
Sbjct: 1   MYGACGSLDDARTAFDRLAHPNAFSWNILILAYAQNGQIPLARDAFDRMPARTSVTWNTL 60

Query: 405 VMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAM 459
           +  ++  G   E+  +F++M E G     VT+  I+ A +H GL++R   LF+AM
Sbjct: 61  LTAYARAGHMPESELLFKNMPERGI----VTWNSIVEAYAHNGLLARAKTLFDAM 111


>gi|224096249|ref|XP_002310592.1| predicted protein [Populus trichocarpa]
 gi|222853495|gb|EEE91042.1| predicted protein [Populus trichocarpa]
          Length = 747

 Score =  344 bits (882), Expect = 9e-92,   Method: Compositional matrix adjust.
 Identities = 201/622 (32%), Positives = 337/622 (54%), Gaps = 45/622 (7%)

Query: 21  YSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMI 80
           Y+K GF  +A  LF  MP +   S+N +LSG+ + G+L +A ++F+ +P R+ VSWT +I
Sbjct: 20  YAKTGFHLDAHDLFNEMPVKTTFSWNTILSGYAKQGKLEKAHQVFDLIPVRDSVSWTTII 79

Query: 81  CGLADAGRVCEARKLFEEMPERNVVSW--------------------------------- 107
            G    GR  +A K+F +M +  V+                                   
Sbjct: 80  VGYNQMGRFEDAIKIFVDMVKDKVLPTQFTLTNVLASCAATGSRGIGKKVHSFVVKLGLH 139

Query: 108 ------NSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEM 161
                 NS++    + G+L  A+ VF+ M ++N  SWNAMI+ ++ C  +  A+  FE +
Sbjct: 140 ACVPVANSLLNMYAKTGDLKMAKVVFDRMKLRNTSSWNAMISLHMNCGRVDLALAQFELL 199

Query: 162 EERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNG-FHKESLLLF 220
            ER++V+W SMI+G  + G   E    F  + +   +         A +   + E L   
Sbjct: 200 SERDIVSWNSMIAGCNQHGFDNEALQFFSSILKDTSLKPDRFSLASALSACANLEKLSFG 259

Query: 221 IEMKG-ICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVR--DEISWTSMIDGYL 277
            ++ G I     + +    N++I+ Y + G +E A+ + +   +   D I++T++++GY+
Sbjct: 260 KQIHGYIVRTMFDASGAVGNALISMYAKSGGVEIARRIIEQSGISDLDVIAFTALLNGYV 319

Query: 278 SVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSV 337
            +G ++ A  +F+++ D D VAWTAMI G VQN L  +A  +F  M + G  P + T + 
Sbjct: 320 KLGDITPARQIFNSLKDPDVVAWTAMIVGYVQNGLNNDAIEVFKTMVSEGPRPNSFTLAA 379

Query: 338 LFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNM-VSR 396
           +  A+ +  +++ G+QIH   +++       + N L +MYAK G I+ A  +F+ +  +R
Sbjct: 380 MLSASSSVTSLNHGKQIHASAIRSGEALSPSVGNALTTMYAKAGSINGARKVFNLLRQNR 439

Query: 397 DLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELF 456
           D VSW SM+M  + HGL  E +++FE ML  G  P+ +T++G+LSAC+H GLV +G   F
Sbjct: 440 DTVSWTSMIMALAQHGLGEEAIELFEQMLTLGIKPDHITYVGVLSACTHGGLVEQGRSYF 499

Query: 457 NAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEG 516
           + M +V+KI P   HY  M++L GRAG ++EA +FV  +P EPD   WG+LL +C   + 
Sbjct: 500 DLMKNVHKIDPTLSHYACMVDLFGRAGLLQEAYKFVENMPMEPDVIAWGSLLSSCKVYK- 558

Query: 517 NAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWL 576
           N ++A+ AA+RLL ++P N+ A+  L N+Y++ G+  +  K+R  M  +GV+K  G SW+
Sbjct: 559 NVDLAKVAAERLLLIEPNNSGAYSALANVYSSCGKWDDAAKIRKLMKARGVKKEQGLSWV 618

Query: 577 MRNGGIQMFLSGDKIPAQVAEI 598
                  +F   D +  Q  EI
Sbjct: 619 QIQNKTHVFGVEDGLHPQKDEI 640



 Score =  135 bits (339), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 107/411 (26%), Positives = 200/411 (48%), Gaps = 27/411 (6%)

Query: 16  SSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVS 75
           S +  Y+K G +  AK +F  M  RN  S+NAM+S  +  GR+  A   FE + ER++VS
Sbjct: 147 SLLNMYAKTGDLKMAKVVFDRMKLRNTSSWNAMISLHMNCGRVDLALAQFELLSERDIVS 206

Query: 76  WTAMICGLADAGRVCEARKLFEEM-------PERNVVSWNSMVVGLIRNGELNEARK--- 125
           W +MI G    G   EA + F  +       P+R   S  S +       +L+  ++   
Sbjct: 207 WNSMIAGCNQHGFDNEALQFFSSILKDTSLKPDR--FSLASALSACANLEKLSFGKQIHG 264

Query: 126 -VFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEE--MEERNVVTWTSMISGYCRAGEV 182
            +  +M   +    NA+I+ Y +   +  A  + E+  + + +V+ +T++++GY + G++
Sbjct: 265 YIVRTMFDASGAVGNALISMYAKSGGVEIARRIIEQSGISDLDVIAFTALLNGYVKLGDI 324

Query: 183 EEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMI 242
                +F  +   +VV+WTAMI G+  NG + +++ +F   K +   G   N  +  +M+
Sbjct: 325 TPARQIFNSLKDPDVVAWTAMIVGYVQNGLNNDAIEVF---KTMVSEGPRPNSFTLAAML 381

Query: 243 NGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDG----YLSVGQVSNAYYLFHNM-PDRDA 297
           +       L   + +  +     E    S+ +     Y   G ++ A  +F+ +  +RD 
Sbjct: 382 SASSSVTSLNHGKQIHASAIRSGEALSPSVGNALTTMYAKAGSINGARKVFNLLRQNRDT 441

Query: 298 VAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCV 357
           V+WT+MI  L Q+ L  EA  LF +M   G+ P + T+  +  A      ++ GR  +  
Sbjct: 442 VSWTSMIMALAQHGLGEEAIELFEQMLTLGIKPDHITYVGVLSACTHGGLVEQGRS-YFD 500

Query: 358 LMKTESESDLILEN--CLISMYAKCGVIDNAYNIFSNM-VSRDLVSWNSMV 405
           LMK   + D  L +  C++ ++ + G++  AY    NM +  D+++W S++
Sbjct: 501 LMKNVHKIDPTLSHYACMVDLFGRAGLLQEAYKFVENMPMEPDVIAWGSLL 551



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 75/259 (28%), Positives = 130/259 (50%), Gaps = 36/259 (13%)

Query: 239 NSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAV 298
           N+++N Y + G   +A +LF+ +PV+   SW +++ GY   G++  A+ +F  +P RD+V
Sbjct: 14  NNLMNLYAKTGFHLDAHDLFNEMPVKTTFSWNTILSGYAKQGKLEKAHQVFDLIPVRDSV 73

Query: 299 AWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVL 358
           +WT +I G  Q   F +A  +F++M    V P   T + +  +  AT +  +G+++H  +
Sbjct: 74  SWTTIIVGYNQMGRFEDAIKIFVDMVKDKVLPTQFTLTNVLASCAATGSRGIGKKVHSFV 133

Query: 359 MKTESESDLILENCLISMYAK-------------------------------CGVIDNAY 387
           +K    + + + N L++MYAK                               CG +D A 
Sbjct: 134 VKLGLHACVPVANSLLNMYAKTGDLKMAKVVFDRMKLRNTSSWNAMISLHMNCGRVDLAL 193

Query: 388 NIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESML-ESGTHPNSVTFLGILSACSHA 446
             F  +  RD+VSWNSM+ G + HG  NE L+ F S+L ++   P+  +    LSAC++ 
Sbjct: 194 AQFELLSERDIVSWNSMIAGCNQHGFDNEALQFFSSILKDTSLKPDRFSLASALSACANL 253

Query: 447 GLVSRGWE----LFNAMFD 461
             +S G +    +   MFD
Sbjct: 254 EKLSFGKQIHGYIVRTMFD 272



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 66/277 (23%), Positives = 120/277 (43%), Gaps = 47/277 (16%)

Query: 11  VVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEM-- 68
           V+  T+ +  Y K G I  A+ +F  +   +VV++ AM+ G++QNG  ++A  +F+ M  
Sbjct: 308 VIAFTALLNGYVKLGDITPARQIFNSLKDPDVVAWTAMIVGYVQNGLNNDAIEVFKTMVS 367

Query: 69  --PERNVVSWTAMICGLADAGRVCEARKLFEEMPER----NVVSWNSMVVGLIRNGELNE 122
             P  N  +  AM+   +    +   +++           +    N++     + G +N 
Sbjct: 368 EGPRPNSFTLAAMLSASSSVTSLNHGKQIHASAIRSGEALSPSVGNALTTMYAKAGSING 427

Query: 123 ARKVFNSM-PIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNV----VTWTSMISGYC 177
           ARKVFN +   ++ +SW +MI    +  +  EAI LFE+M    +    +T+  ++S   
Sbjct: 428 ARKVFNLLRQNRDTVSWTSMIMALAQHGLGEEAIELFEQMLTLGIKPDHITYVGVLSACT 487

Query: 178 RAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQS 237
             G VE+G   F  M  KNV      +  +A                             
Sbjct: 488 HGGLVEQGRSYFDLM--KNVHKIDPTLSHYA----------------------------- 516

Query: 238 CNSMINGYIRFGRLEEAQNLFDTVPVR-DEISWTSMI 273
              M++ + R G L+EA    + +P+  D I+W S++
Sbjct: 517 --CMVDLFGRAGLLQEAYKFVENMPMEPDVIAWGSLL 551


>gi|297723179|ref|NP_001173953.1| Os04g0436350 [Oryza sativa Japonica Group]
 gi|21740490|emb|CAD40814.1| OSJNBa0006B20.5 [Oryza sativa Japonica Group]
 gi|125590470|gb|EAZ30820.1| hypothetical protein OsJ_14890 [Oryza sativa Japonica Group]
 gi|218194889|gb|EEC77316.1| hypothetical protein OsI_15981 [Oryza sativa Indica Group]
 gi|255675491|dbj|BAH92681.1| Os04g0436350 [Oryza sativa Japonica Group]
          Length = 685

 Score =  344 bits (882), Expect = 9e-92,   Method: Compositional matrix adjust.
 Identities = 205/597 (34%), Positives = 324/597 (54%), Gaps = 23/597 (3%)

Query: 14  LTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNV 73
           L + ++ Y++ G + +A+ +F  MP RN  SYNA+LS   + GR  +A  LF  +P+ + 
Sbjct: 53  LNTLLSAYARLGSLHDARRVFDGMPHRNTFSYNALLSACARLGRADDALALFGAIPDPDQ 112

Query: 74  VSWTAMICGLADAGRVCEARKLFEEMPERNVV----SWNSMVVGLI-----RNGELNEAR 124
            S+ A++  LA  GR  +A +    M   + V    S+ S +         R GE   A 
Sbjct: 113 CSYNAVVAALAQHGRGGDALRFLAAMHADDFVLNAYSFASALSACASEKASRTGEQVHA- 171

Query: 125 KVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEE 184
            V  S    +V    A++  Y +C    EA  +F+ M ERN+V+W S+I+ Y + G V+E
Sbjct: 172 LVTKSSHGSDVYIGTALVDMYAKCERPEEAQKVFDAMPERNIVSWNSLITCYEQNGPVDE 231

Query: 185 GYCLFRRMPRK----NVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNS 240
              LF RM +     + V+  +++   A     +E   +   M  +  +    ++   N+
Sbjct: 232 ALALFVRMMKDGFVPDEVTLASVMSACAGLAAGREGRQVHTRM--VKSDRFREDMVLNNA 289

Query: 241 MINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAW 300
           +++ Y + GR  EA+ +FD + +R  +S TSMI GY     V +A  +F  M +++ VAW
Sbjct: 290 LVDMYAKCGRTWEAKCVFDRMAIRSVVSETSMITGYAKSANVGDAQAVFLQMVEKNVVAW 349

Query: 301 TAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMK 360
             +I+    N    EA  LF+ ++   V P + T+  +  A    AN+ LG+Q H  ++K
Sbjct: 350 NVLIATYAHNSEEEEALRLFVRLKRESVWPTHYTYGNVLNACANLANLQLGQQAHVHVLK 409

Query: 361 ------TESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLA 414
                 +  ESD+ + N L+ MY K G I +   +F  M +RD VSWN+M++G++ +G A
Sbjct: 410 EGFRFDSGPESDVFVGNSLVDMYLKTGSISDGAKVFERMAARDNVSWNAMIVGYAQNGRA 469

Query: 415 NETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVS 474
            + L +FE ML S   P+SVT +G+LSAC H+GLV  G   F +M + + I P  +HY  
Sbjct: 470 KDALLLFERMLCSNERPDSVTMIGVLSACGHSGLVKEGRRYFQSMTEDHGIIPTRDHYTC 529

Query: 475 MINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPL 534
           MI+LLGRAG +KE EE +  +P EPD  +W +LLGAC     N ++ E AA +L ELDP 
Sbjct: 530 MIDLLGRAGHLKEVEELIENMPMEPDAVLWASLLGACRL-HKNIDMGEWAAGKLFELDPD 588

Query: 535 NAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKI 591
           N+  +V+L N+YA  G+  +  ++R  M  +GV K PGCSW+     + +FL+ D I
Sbjct: 589 NSGPYVLLSNMYAELGKWADVFRVRRSMKHRGVSKQPGCSWIEIGRKVNVFLARDNI 645



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 101/366 (27%), Positives = 165/366 (45%), Gaps = 72/366 (19%)

Query: 1   MSERNHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQ--------------------- 39
           M ERN     +V   S IT Y + G +DEA ALF  M +                     
Sbjct: 208 MPERN-----IVSWNSLITCYEQNGPVDEALALFVRMMKDGFVPDEVTLASVMSACAGLA 262

Query: 40  -------------------RNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMI 80
                               ++V  NA++  + + GR  EA+ +F+ M  R+VVS T+MI
Sbjct: 263 AGREGRQVHTRMVKSDRFREDMVLNNALVDMYAKCGRTWEAKCVFDRMAIRSVVSETSMI 322

Query: 81  CGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNA 140
            G A +  V +A+ +F +M E+NVV+WN ++     N E  EA ++F  +  ++V   + 
Sbjct: 323 TGYAKSANVGDAQAVFLQMVEKNVVAWNVLIATYAHNSEEEEALRLFVRLKRESVWPTHY 382

Query: 141 MIAGYVECC------MMGEAIVL--------FEEMEERNVVTWTSMISGYCRAGEVEEGY 186
                +  C       +G+   +        F+   E +V    S++  Y + G + +G 
Sbjct: 383 TYGNVLNACANLANLQLGQQAHVHVLKEGFRFDSGPESDVFVGNSLVDMYLKTGSISDGA 442

Query: 187 CLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYI 246
            +F RM  ++ VSW AMI G+A NG  K++LLLF  M  +C N    +V +   +++   
Sbjct: 443 KVFERMAARDNVSWNAMIVGYAQNGRAKDALLLFERM--LCSNERPDSV-TMIGVLSACG 499

Query: 247 RFGRLEEAQNLFDT-------VPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMP-DRDAV 298
             G ++E +  F +       +P RD   +T MID     G +     L  NMP + DAV
Sbjct: 500 HSGLVKEGRRYFQSMTEDHGIIPTRDH--YTCMIDLLGRAGHLKEVEELIENMPMEPDAV 557

Query: 299 AWTAMI 304
            W +++
Sbjct: 558 LWASLL 563



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 55/208 (26%), Positives = 99/208 (47%), Gaps = 21/208 (10%)

Query: 7   PKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFE 66
           P+S V    S +  Y K G I +   +F+ M  R+ VS+NAM+ G+ QNGR  +A  LFE
Sbjct: 418 PESDVFVGNSLVDMYLKTGSISDGAKVFERMAARDNVSWNAMIVGYAQNGRAKDALLLFE 477

Query: 67  EM---PER-NVVSWTAMICGLADAGRVCEARKLFEEMPERNVV-----SWNSMVVGLIRN 117
            M    ER + V+   ++     +G V E R+ F+ M E + +      +  M+  L R 
Sbjct: 478 RMLCSNERPDSVTMIGVLSACGHSGLVKEGRRYFQSMTEDHGIIPTRDHYTCMIDLLGRA 537

Query: 118 GELNEARKVFNSMPIK-NVISWNAMIAGYVECCMMGEAIVLFE-------EMEERNVVTW 169
           G L E  ++  +MP++ + + W +++      C + + I + E       E++  N   +
Sbjct: 538 GHLKEVEELIENMPMEPDAVLWASLLGA----CRLHKNIDMGEWAAGKLFELDPDNSGPY 593

Query: 170 TSMISGYCRAGEVEEGYCLFRRMPRKNV 197
             + + Y   G+  + + + R M  + V
Sbjct: 594 VLLSNMYAELGKWADVFRVRRSMKHRGV 621



 Score = 42.4 bits (98), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 52/237 (21%), Positives = 95/237 (40%), Gaps = 48/237 (20%)

Query: 366 DLILENCLISMYAKCGVIDNAYNIFSNMVSR----------------------------- 396
           +  L N L+S YA+ G + +A  +F  M  R                             
Sbjct: 49  ETFLLNTLLSAYARLGSLHDARRVFDGMPHRNTFSYNALLSACARLGRADDALALFGAIP 108

Query: 397 --DLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWE 454
             D  S+N++V   + HG   + L+   +M       N+ +F   LSAC+ +   SR  E
Sbjct: 109 DPDQCSYNAVVAALAQHGRGGDALRFLAAMHADDFVLNAYSFASALSACA-SEKASRTGE 167

Query: 455 LFNAMFDVYKIQPGPEHYV--SMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACG 512
             +A+  V K   G + Y+  +++++  +  + +EA++    +P E +   W +L+  C 
Sbjct: 168 QVHAL--VTKSSHGSDVYIGTALVDMYAKCERPEEAQKVFDAMP-ERNIVSWNSLI-TC- 222

Query: 513 FCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAA--------SGRHVEEHKLRMD 561
             E N  + E  A  +  +     P  V L ++ +A         GR V    ++ D
Sbjct: 223 -YEQNGPVDEALALFVRMMKDGFVPDEVTLASVMSACAGLAAGREGRQVHTRMVKSD 278


>gi|224066034|ref|XP_002302000.1| predicted protein [Populus trichocarpa]
 gi|222843726|gb|EEE81273.1| predicted protein [Populus trichocarpa]
          Length = 797

 Score =  343 bits (881), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 201/641 (31%), Positives = 333/641 (51%), Gaps = 57/641 (8%)

Query: 14  LTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMP--ER 71
           L   I  YSK   ++ A+ LF  +PQ ++V+   +++ +   G L  +R++F + P   R
Sbjct: 51  LNRLIDIYSKSSKLNYARYLFDEIPQPDIVARTTLIAAYSAAGDLKLSRKIFSDTPLGMR 110

Query: 72  NVVSWTAMICGLADAGRVCEARKLFEEMPERNV----VSWNSMVVGLIRNGELNEARKVF 127
           + V + AMI   +       A +LF +M   N      ++ S++  L    E  +  +  
Sbjct: 111 DSVFYNAMITAYSHNHDGHAAIELFCDMQRDNFRPDNYTFTSVLGALALVAEKEKHCQQL 170

Query: 128 NSMPIKNVISW-----NAMIAGYVECC---------MMGEAIVLFEEMEERNVVTWTSMI 173
           +   +K+   +     NA+I+ YV+C          +M EA  LF+EM  R+ ++WT++I
Sbjct: 171 HCAVVKSGTGFVTSVLNALISSYVKCAASPSAQSSSLMAEARKLFDEMPNRDELSWTTII 230

Query: 174 SGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEM---------- 223
           +GY +  +++          +K  V+W AMI G+A  G + E+  +F +M          
Sbjct: 231 TGYVKNNDLDAAKEFLNGTSKKLGVAWNAMISGYAHRGLYLEAFEMFRKMIMSKIQLDEF 290

Query: 224 --------------------------KGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNL 257
                                     K + +   +  +   N++I  Y + G+++ AQ +
Sbjct: 291 TFTSVISVCANAGCFRLGKEMHAYFLKTVANPAPDVAMPVNNALITFYWKCGKVDIAQEI 350

Query: 258 FDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEAT 317
           F+ +P RD +SW  ++ GY++V  +  A   F+ MP+++ ++W  MISGL Q     EA 
Sbjct: 351 FNKMPERDLVSWNIILSGYVNVRCMDEAKSFFNEMPEKNILSWIIMISGLAQIGFAEEAL 410

Query: 318 YLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMY 377
             F  M+  G  P +  F+    +     ++  GRQ+H  +++   ES L   N LI+MY
Sbjct: 411 KFFNRMKLQGFEPCDYAFAGAIISCSVLGSLKHGRQLHAQVVRYGYESSLSAGNALITMY 470

Query: 378 AKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFL 437
           A+CGV+D A+ +F NM   D +SWN+M+     HG   + +++FE ML+ G  P+ ++FL
Sbjct: 471 ARCGVVDAAHCLFINMPCVDAISWNAMIAALGQHGQGTQAIELFEEMLKEGILPDRISFL 530

Query: 438 GILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPF 497
            ++SACSHAGLV  G + F++M +VY + P  EHY  +I+LL RAGK  EA+E +  +PF
Sbjct: 531 TVISACSHAGLVKEGRKYFDSMHNVYGVNPDEEHYARIIDLLCRAGKFSEAKEVMESMPF 590

Query: 498 EPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHK 557
           EP   IW ALL  C    GN ++   AA+RL EL P +   +V+L N+YA +G+  +  K
Sbjct: 591 EPGAPIWEALLAGCRI-HGNIDLGIEAAERLFELKPQHDGTYVLLSNMYAVAGQWNDMAK 649

Query: 558 LRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
           +R  M  +GV+K PGCSW+     +  FL GD    +V +I
Sbjct: 650 VRKLMRDRGVKKEPGCSWIEVENKVHSFLVGDANHPEVRQI 690


>gi|356544545|ref|XP_003540710.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Glycine max]
          Length = 705

 Score =  343 bits (880), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 193/595 (32%), Positives = 321/595 (53%), Gaps = 54/595 (9%)

Query: 46  NAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVV 105
           N ++  + + G   +AR++F+ MP+RN  S+ A++  L   G++ EA  +F+ MPE +  
Sbjct: 58  NRLVDAYGKCGYFEDARKVFDRMPQRNTFSYNAVLSVLTKFGKLDEAFNVFKSMPEPDQC 117

Query: 106 SWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCM------MGEAI--VL 157
           SWN+MV G  ++    EA + F  M  ++ +         +  C       MG  I  ++
Sbjct: 118 SWNAMVSGFAQHDRFEEALRFFVDMHSEDFVLNEYSFGSALSACAGLTDLNMGIQIHALI 177

Query: 158 FEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESL 217
            +     +V   ++++  Y + G V      F  M  +N+VSW ++I  +  NG   ++L
Sbjct: 178 SKSRYLLDVYMGSALVDMYSKCGVVACAQRAFDGMAVRNIVSWNSLITCYEQNGPAGKAL 237

Query: 218 LLFIEMKGICDNGNNCN-------VQSC-----------------------------NSM 241
            +F+ M    DNG   +       V +C                             N++
Sbjct: 238 EVFVMMM---DNGVEPDEITLASVVSACASWSAIREGLQIHARVVKRDKYRNDLVLGNAL 294

Query: 242 INGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWT 301
           ++ Y +  R+ EA+ +FD +P+R+ +S TSM+ GY     V  A  +F NM +++ V+W 
Sbjct: 295 VDMYAKCRRVNEARLVFDRMPLRNVVSETSMVCGYARAASVKAARLMFSNMMEKNVVSWN 354

Query: 302 AMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMK- 360
           A+I+G  QN    EA  LF+ ++   + P + TF  L  A    A++ LGRQ H  ++K 
Sbjct: 355 ALIAGYTQNGENEEAVRLFLLLKRESIWPTHYTFGNLLNACANLADLKLGRQAHTQILKH 414

Query: 361 -----TESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLAN 415
                +  ESD+ + N LI MY KCG++++   +F  MV RD+VSWN+M++G++ +G   
Sbjct: 415 GFWFQSGEESDIFVGNSLIDMYMKCGMVEDGCLVFERMVERDVVSWNAMIVGYAQNGYGT 474

Query: 416 ETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSM 475
             L++F  ML SG  P+ VT +G+LSACSHAGLV  G   F++M     + P  +H+  M
Sbjct: 475 NALEIFRKMLVSGQKPDHVTMIGVLSACSHAGLVEEGRRYFHSMRTELGLAPMKDHFTCM 534

Query: 476 INLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLN 535
           ++LLGRAG + EA + +  +P +PD+ +WG+LL AC    GN E+ ++ A++L+E+DPLN
Sbjct: 535 VDLLGRAGCLDEANDLIQTMPMQPDNVVWGSLLAACKV-HGNIELGKYVAEKLMEIDPLN 593

Query: 536 APAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDK 590
           +  +V+L N+YA  GR  +  ++R  M  +GV K PGCSW+     + +F+  DK
Sbjct: 594 SGPYVLLSNMYAELGRWKDVVRVRKQMRQRGVIKQPGCSWIEIQSRVHVFMVKDK 648



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 77/311 (24%), Positives = 135/311 (43%), Gaps = 52/311 (16%)

Query: 7   PKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFE 66
           P   VV  TS +  Y++   +  A+ +F  M ++NVVS+NA+++G+ QNG   EA RLF 
Sbjct: 315 PLRNVVSETSMVCGYARAASVKAARLMFSNMMEKNVVSWNALIAGYTQNGENEEAVRLFL 374

Query: 67  EMPERNVVSWTAMICGLADA---------GRVCEARKL-----FEEMPERNVVSWNSMVV 112
            +   ++         L +A         GR    + L     F+   E ++   NS++ 
Sbjct: 375 LLKRESIWPTHYTFGNLLNACANLADLKLGRQAHTQILKHGFWFQSGEESDIFVGNSLID 434

Query: 113 GLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEM----EERNVVT 168
             ++ G + +   VF  M  ++V+SWNAMI GY +      A+ +F +M    ++ + VT
Sbjct: 435 MYMKCGMVEDGCLVFERMVERDVVSWNAMIVGYAQNGYGTNALEIFRKMLVSGQKPDHVT 494

Query: 169 WTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICD 228
              ++S    AG VEEG   F  M  +  +    M          K+     +++ G   
Sbjct: 495 MIGVLSACSHAGLVEEGRRYFHSM--RTELGLAPM----------KDHFTCMVDLLG--- 539

Query: 229 NGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVR-DEISWTSMIDGYLSVGQVSNAYY 287
                             R G L+EA +L  T+P++ D + W S++      G +    Y
Sbjct: 540 ------------------RAGCLDEANDLIQTMPMQPDNVVWGSLLAACKVHGNIELGKY 581

Query: 288 LFHNMPDRDAV 298
           +   + + D +
Sbjct: 582 VAEKLMEIDPL 592



 Score = 62.0 bits (149), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 41/138 (29%), Positives = 60/138 (43%), Gaps = 34/138 (24%)

Query: 344 ATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGV--------------------- 382
           + + ID  R+IH  ++KT+  S++ ++N L+  Y KCG                      
Sbjct: 32  SKSGID-ARRIHARIIKTQFSSEIFIQNRLVDAYGKCGYFEDARKVFDRMPQRNTFSYNA 90

Query: 383 ----------IDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPN 432
                     +D A+N+F +M   D  SWN+MV GF+ H    E L+ F  M       N
Sbjct: 91  VLSVLTKFGKLDEAFNVFKSMPEPDQCSWNAMVSGFAQHDRFEEALRFFVDMHSEDFVLN 150

Query: 433 SVTFLGILSACSHAGLVS 450
             +F   LSAC  AGL  
Sbjct: 151 EYSFGSALSAC--AGLTD 166


>gi|224121210|ref|XP_002318526.1| predicted protein [Populus trichocarpa]
 gi|222859199|gb|EEE96746.1| predicted protein [Populus trichocarpa]
          Length = 552

 Score =  343 bits (880), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 178/458 (38%), Positives = 271/458 (59%), Gaps = 13/458 (2%)

Query: 141 MIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSW 200
           MI+GY+       A  LF++M ER++ +W  M++GY R  +++    LF RMP +++VSW
Sbjct: 1   MISGYLRNHKFDLARDLFDKMPERDLFSWNVMLTGYVRNRDLKTARALFERMPERDIVSW 60

Query: 201 TAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDT 260
            AM+ G+A NGF  E+  +F +M     NG      S N ++  Y++ GR+E+A+ LF++
Sbjct: 61  NAMLSGYAQNGFVDEAREIFYKMP--LKNG-----ISWNGLLAAYVQNGRIEDAKRLFES 113

Query: 261 VPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLF 320
                 +SW  ++ G+     V     LF NMP RD+++W+AMI+G  QN    EA + F
Sbjct: 114 KMDWTLVSWNCLMGGF-----VRKRRNLFDNMPQRDSISWSAMIAGYSQNGCSEEALHFF 168

Query: 321 MEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKC 380
           +EM+        ++F+         A ++LGRQ+HC L+K   ++   + N L++MY KC
Sbjct: 169 VEMQRDCERLNRSSFTCALSTCSNIAALELGRQLHCRLVKAGYQTGWYVGNALLAMYCKC 228

Query: 381 GVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGIL 440
           G ID A + F  ++ +D+VSWN+M+ G++ HG   E L VFE M  +G  P+  T + +L
Sbjct: 229 GSIDEARDAFQEILEKDVVSWNTMIHGYARHGFGEEALTVFELMKTTGIRPDDATMVSVL 288

Query: 441 SACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPD 500
           +ACSHAGLV +G E F +M   Y I     HY  M++LLGRAG+++EA+  +  +PFEPD
Sbjct: 289 AACSHAGLVDQGSEYFYSMNRDYGITAKLVHYTCMVDLLGRAGQLEEAQNLMKNMPFEPD 348

Query: 501 HRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRM 560
              WGALLGA     GN E+ E AA+ + E++P N+  +++L  +YAASGR  +  K+R+
Sbjct: 349 AATWGALLGASRI-HGNTELGEKAAQIIFEMEPHNSGMYILLSKLYAASGRWSDAGKMRL 407

Query: 561 DMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
           +M  KGV+KVPG SWL     I  F  GD       +I
Sbjct: 408 EMRNKGVKKVPGYSWLEVQNKIHTFKVGDTSHPHTDKI 445



 Score =  205 bits (522), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 118/399 (29%), Positives = 205/399 (51%), Gaps = 20/399 (5%)

Query: 48  MLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSW 107
           M+SG+L+N +   AR LF++MPER++ SW  M+ G      +  AR LFE MPER++VSW
Sbjct: 1   MISGYLRNHKFDLARDLFDKMPERDLFSWNVMLTGYVRNRDLKTARALFERMPERDIVSW 60

Query: 108 NSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVV 167
           N+M+ G  +NG ++EAR++F  MP+KN ISWN ++A YV+   + +A  LFE   +  +V
Sbjct: 61  NAMLSGYAQNGFVDEAREIFYKMPLKNGISWNGLLAAYVQNGRIEDAKRLFESKMDWTLV 120

Query: 168 TWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGIC 227
           +W  ++ G+ R         LF  MP+++ +SW+AMI G++ NG  +E+L  F+EM+  C
Sbjct: 121 SWNCLMGGFVRKRR-----NLFDNMPQRDSISWSAMIAGYSQNGCSEEALHFFVEMQRDC 175

Query: 228 DNGN----NCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISW---TSMIDGYLSVG 280
           +  N     C + +C+++    +  GR    +     V    +  W    +++  Y   G
Sbjct: 176 ERLNRSSFTCALSTCSNI--AALELGRQLHCR----LVKAGYQTGWYVGNALLAMYCKCG 229

Query: 281 QVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFG 340
            +  A   F  + ++D V+W  MI G  ++    EA  +F  M+  G+ P +AT   +  
Sbjct: 230 SIDEARDAFQEILEKDVVSWNTMIHGYARHGFGEEALTVFELMKTTGIRPDDATMVSVLA 289

Query: 341 AAGATANIDLGRQIHCVLMKTES-ESDLILENCLISMYAKCGVIDNAYNIFSNM-VSRDL 398
           A      +D G +    + +     + L+   C++ +  + G ++ A N+  NM    D 
Sbjct: 290 ACSHAGLVDQGSEYFYSMNRDYGITAKLVHYTCMVDLLGRAGQLEEAQNLMKNMPFEPDA 349

Query: 399 VSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFL 437
            +W +++     HG      K  + + E   H + +  L
Sbjct: 350 ATWGALLGASRIHGNTELGEKAAQIIFEMEPHNSGMYIL 388



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 101/354 (28%), Positives = 173/354 (48%), Gaps = 26/354 (7%)

Query: 7   PKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFE 66
           P+  +V   + ++ Y++ GF+DEA+ +F  MP +N +S+N +L+ ++QNGR+ +A+RLFE
Sbjct: 53  PERDIVSWNAMLSGYAQNGFVDEAREIFYKMPLKNGISWNGLLAAYVQNGRIEDAKRLFE 112

Query: 67  EMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKV 126
              +  +VSW  ++ G      V + R LF+ MP+R+ +SW++M+ G  +NG   EA   
Sbjct: 113 SKMDWTLVSWNCLMGGF-----VRKRRNLFDNMPQRDSISWSAMIAGYSQNGCSEEALHF 167

Query: 127 FNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNV-----VTW---TSMISGYCR 178
           F  M         +     +  C    A+ L  ++  R V       W    ++++ YC+
Sbjct: 168 FVEMQRDCERLNRSSFTCALSTCSNIAALELGRQLHCRLVKAGYQTGWYVGNALLAMYCK 227

Query: 179 AGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSC 238
            G ++E    F+ +  K+VVSW  MI G+A +GF +E+L +F  MK     G   +  + 
Sbjct: 228 CGSIDEARDAFQEILEKDVVSWNTMIHGYARHGFGEEALTVFELMK---TTGIRPDDATM 284

Query: 239 NSMINGYIRFGRLEEAQNLF-----DTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMP 293
            S++      G +++    F     D       + +T M+D     GQ+  A  L  NMP
Sbjct: 285 VSVLAACSHAGLVDQGSEYFYSMNRDYGITAKLVHYTCMVDLLGRAGQLEEAQNLMKNMP 344

Query: 294 -DRDAVAWTAMISGLV---QNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAG 343
            + DA  W A++         EL  +A  +  EM  H    +    S L+ A+G
Sbjct: 345 FEPDAATWGALLGASRIHGNTELGEKAAQIIFEMEPHN-SGMYILLSKLYAASG 397


>gi|449446125|ref|XP_004140822.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 809

 Score =  343 bits (879), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 196/604 (32%), Positives = 317/604 (52%), Gaps = 41/604 (6%)

Query: 27  IDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNV----VSWTAMICG 82
           ID  + +F  +   N   +N M+  ++Q      A  L++ M    +     ++  +I  
Sbjct: 28  IDYTRRIFNFIENTNCFMWNMMIRAYIQTNSPHFAFTLYKSMLSNYLGADNYTYPLLIQA 87

Query: 83  LADAGRVCEARKLFEEMP----ERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISW 138
            +      EA+++   +     + +V   N+++        + +A +VFN   + + +SW
Sbjct: 88  CSIRRSEWEAKQVHNHVLKLGFDSDVYVRNTLINCFSVCSNMTDACRVFNESSVLDSVSW 147

Query: 139 NAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVV 198
           N+++AGY+E   + EA  ++ +M ER+++   SMI  +   G V E   LF  M  K++V
Sbjct: 148 NSILAGYIEIGNVEEAKHIYHQMPERSIIASNSMIVLFGMRGLVVEACKLFDEMLEKDMV 207

Query: 199 SWTAMIGGFAWNGFHKESLLLFIEMKGI---------------CDN-------------- 229
           +W+A+I  F  N  ++E++  F+ M  I               C N              
Sbjct: 208 TWSALIACFQQNEMYEEAIRTFVGMHKIGVMVDEVVAVSALSACANLLVVNMGKLIHSLS 267

Query: 230 ---GNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAY 286
              G    +   N++I  Y + G +  A+ LFD   + D ISW SMI GYL    V NA 
Sbjct: 268 LKIGTESYINLQNALIYMYSKCGDIMVARKLFDEAYLLDLISWNSMISGYLKCNLVDNAK 327

Query: 287 YLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATA 346
            +F +MP++D V+W++MISG  QN+LF E   LF EM+  G  P   T   +  A    A
Sbjct: 328 AIFDSMPEKDVVSWSSMISGYAQNDLFDETLALFQEMQMSGFKPDETTLVSVISACARLA 387

Query: 347 NIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVM 406
            ++ G+ +H  + +     ++IL   LI MY KCG ++ A  +F  M+ + + +WN++++
Sbjct: 388 ALEQGKWVHAYIKRNGLTINVILGTTLIDMYMKCGCVETALEVFYGMIEKGISTWNALIL 447

Query: 407 GFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQ 466
           G + +GL   +L +F +M +    PN +TF+G+L AC H GLV  G   F +M   +KIQ
Sbjct: 448 GLAMNGLVESSLDMFSNMKKCHVTPNEITFMGVLGACRHMGLVDEGQHHFYSMIHDHKIQ 507

Query: 467 PGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAK 526
           P  +HY  M++LLGRAGK++EAEE + R+P  PD   WGALLGAC    G++E+     +
Sbjct: 508 PNVKHYGCMVDLLGRAGKLQEAEELLNRMPMTPDVATWGALLGACK-KHGDSEMGRRVGR 566

Query: 527 RLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFL 586
           +L+EL P +   HV+L NIYA+ G+  +  ++R  M    V K+PGCS +  NG I  FL
Sbjct: 567 KLIELQPDHDGFHVLLSNIYASKGKWDDVLEIRGMMTKHRVLKIPGCSMIEANGVIHEFL 626

Query: 587 SGDK 590
           +GDK
Sbjct: 627 AGDK 630



 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 113/475 (23%), Positives = 213/475 (44%), Gaps = 81/475 (17%)

Query: 12  VHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPER 71
           V   S +  Y + G ++EAK ++  MP+R++++ N+M+  F   G + EA +LF+EM E+
Sbjct: 145 VSWNSILAGYIEIGNVEEAKHIYHQMPERSIIASNSMIVLFGMRGLVVEACKLFDEMLEK 204

Query: 72  NVVSWTAMICGLADAGRVCEARKLFEEM-------------------------------- 99
           ++V+W+A+I          EA + F  M                                
Sbjct: 205 DMVTWSALIACFQQNEMYEEAIRTFVGMHKIGVMVDEVVAVSALSACANLLVVNMGKLIH 264

Query: 100 -------PERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMG 152
                   E  +   N+++    + G++  ARK+F+   + ++ISWN+MI+GY++C ++ 
Sbjct: 265 SLSLKIGTESYINLQNALIYMYSKCGDIMVARKLFDEAYLLDLISWNSMISGYLKCNLVD 324

Query: 153 EAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGF 212
            A  +F+ M E++VV+W+SMISGY                               A N  
Sbjct: 325 NAKAIFDSMPEKDVVSWSSMISGY-------------------------------AQNDL 353

Query: 213 HKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVP----VRDEIS 268
             E+L LF EM+    +G   +  +  S+I+   R   LE+ + +   +       + I 
Sbjct: 354 FDETLALFQEMQM---SGFKPDETTLVSVISACARLAALEQGKWVHAYIKRNGLTINVIL 410

Query: 269 WTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGV 328
            T++ID Y+  G V  A  +F+ M ++    W A+I GL  N L   +  +F  M+   V
Sbjct: 411 GTTLIDMYMKCGCVETALEVFYGMIEKGISTWNALILGLAMNGLVESSLDMFSNMKKCHV 470

Query: 329 PPLNATFSVLFGAAGATANIDLGR-QIHCVLMKTESESDLILENCLISMYAKCGVIDNAY 387
            P   TF  + GA      +D G+   + ++   + + ++    C++ +  + G +  A 
Sbjct: 471 TPNEITFMGVLGACRHMGLVDEGQHHFYSMIHDHKIQPNVKHYGCMVDLLGRAGKLQEAE 530

Query: 388 NIFSNM-VSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILS 441
            + + M ++ D+ +W +++     HG +    +V   ++E    P+   F  +LS
Sbjct: 531 ELLNRMPMTPDVATWGALLGACKKHGDSEMGRRVGRKLIE--LQPDHDGFHVLLS 583



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 40/152 (26%), Positives = 74/152 (48%), Gaps = 10/152 (6%)

Query: 3   ERNHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEAR 62
           +RN     V+  T+ I  Y K G ++ A  +F  M ++ + ++NA++ G   NG +  + 
Sbjct: 400 KRNGLTINVILGTTLIDMYMKCGCVETALEVFYGMIEKGISTWNALILGLAMNGLVESSL 459

Query: 63  RLFEEMPERNV----VSWTAMICGLADAGRVCEARKLFEEM-----PERNVVSWNSMVVG 113
            +F  M + +V    +++  ++      G V E +  F  M      + NV  +  MV  
Sbjct: 460 DMFSNMKKCHVTPNEITFMGVLGACRHMGLVDEGQHHFYSMIHDHKIQPNVKHYGCMVDL 519

Query: 114 LIRNGELNEARKVFNSMPIK-NVISWNAMIAG 144
           L R G+L EA ++ N MP+  +V +W A++  
Sbjct: 520 LGRAGKLQEAEELLNRMPMTPDVATWGALLGA 551


>gi|147859209|emb|CAN83551.1| hypothetical protein VITISV_001173 [Vitis vinifera]
          Length = 728

 Score =  343 bits (879), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 204/630 (32%), Positives = 329/630 (52%), Gaps = 73/630 (11%)

Query: 41  NVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMP 100
           ++V  N M+S ++Q G L +AR LF+EMPERN VSW+A+I GL   GRV E+   FE  P
Sbjct: 86  DLVVSNCMISAYVQWGNLVQARLLFDEMPERNEVSWSALISGLMKYGRVEESMWYFERNP 145

Query: 101 ERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECC----------- 149
            +NVVSW + + G +RNG   EA K+F  +    V   +      V  C           
Sbjct: 146 FQNVVSWTAAISGFVRNGLNFEALKLFFRLLESGVRPNDVTFTSVVRACGELGDFGLGMS 205

Query: 150 -------------------------MMGE---AIVLFEEMEERNVVTWTSMISGYCRAGE 181
                                     MGE   A  +F+ ME+R+VV+WT+++  Y   G+
Sbjct: 206 ILGLVVKAGFEHYLSVSNSLITLSLRMGEIDLARRVFDRMEKRDVVSWTAILDAYVETGD 265

Query: 182 VEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEM--KGICDN---------- 229
           + E   +F  MP +N +SW+AMI  ++ +G+ +E+L LF +M  +G   N          
Sbjct: 266 LREARRIFDEMPERNEISWSAMIARYSQSGYAEEALKLFSKMVQEGFKPNISCFACTLSA 325

Query: 230 --------------------GNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISW 269
                               G + +V   +S+I+ Y + G+ ++ + +FD +  ++ + W
Sbjct: 326 LASLRALSAGINIHGHVTKIGIDKDVFIGSSLIDLYCKCGKPDDGRLVFDLILEKNVVCW 385

Query: 270 TSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVP 329
            SM+ GY   G++     LF  +P+++  +W  +J+G ++NE   +   +F  +   G  
Sbjct: 386 NSMVGGYSINGRLEEXEELFELIPEKNDXSWGTIJAGYLENEQCEKVLEVFNTLLVSGQT 445

Query: 330 PLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNI 389
           P  +TFS +  A  + A++D G  +H  ++K   + D+ +   L  MYAKCG I ++  +
Sbjct: 446 PNKSTFSSVLCACASIASLDKGMNVHGKIIKLGIQYDIFVGTALTDMYAKCGDIGSSKQV 505

Query: 390 FSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESM-LESGTHPNSVTFLGILSACSHAGL 448
           F  M  ++ +SW  M+ G +  G A E+L +FE M   S   PN +  L +L ACSH GL
Sbjct: 506 FERMPEKNEISWTVMIQGLAESGFAVESLILFEEMERTSEVAPNELMLLSVLFACSHCGL 565

Query: 449 VSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALL 508
           V +G   FN+M  VY I+P  +HY  +++LL R+G++ EAEEF+  +PF+P+   W ALL
Sbjct: 566 VDKGLWYFNSMEKVYGIKPKGKHYTCVVDLLSRSGRLYEAEEFIRTIPFQPEANAWAALL 625

Query: 509 GACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVR 568
             C   + + +IAE  AK+L +L   N+  +V+L NIYA++GR ++   +R  M  KG++
Sbjct: 626 SGCKKYK-DEKIAERTAKKLWQLAENNSAGYVLLSNIYASAGRWIDVSNIRKLMREKGLK 684

Query: 569 KVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
           K  GCSW+     +  F S D   +Q  EI
Sbjct: 685 KSGGCSWVEVRNQVHSFYSEDGSHSQSDEI 714



 Score =  194 bits (493), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 143/503 (28%), Positives = 234/503 (46%), Gaps = 84/503 (16%)

Query: 118 GELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYC 177
            E+++  K F+     +++  N MI+ YV+   + +A +LF+EM ERN V+W+++ISG  
Sbjct: 73  AEIDQIVKEFDG---SDLVVSNCMISAYVQWGNLVQARLLFDEMPERNEVSWSALISGLM 129

Query: 178 RAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEM--KGICDNGNNCN- 234
           + G VEE    F R P +NVVSWTA I GF  NG + E+L LF  +   G+  N      
Sbjct: 130 KYGRVEESMWYFERNPFQNVVSWTAAISGFVRNGLNFEALKLFFRLLESGVRPNDVTFTS 189

Query: 235 -VQSC----------------------------NSMINGYIRFGRLEEAQNLFDTVPVRD 265
            V++C                            NS+I   +R G ++ A+ +FD +  RD
Sbjct: 190 VVRACGELGDFGLGMSILGLVVKAGFEHYLSVSNSLITLSLRMGEIDLARRVFDRMEKRD 249

Query: 266 EISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRA 325
            +SWT+++D Y+  G +  A  +F  MP+R+ ++W+AMI+   Q+    EA  LF +M  
Sbjct: 250 VVSWTAILDAYVETGDLREARRIFDEMPERNEISWSAMIARYSQSGYAEEALKLFSKMVQ 309

Query: 326 HGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDN 385
            G  P  + F+    A  +   +  G  IH  + K   + D+ + + LI +Y KCG  D+
Sbjct: 310 EGFKPNISCFACTLSALASLRALSAGINIHGHVTKIGIDKDVFIGSSLIDLYCKCGKPDD 369

Query: 386 AYNIFSNMVSRDLVSWNSMVMGFSHHG---------------------------LANE-- 416
              +F  ++ +++V WNSMV G+S +G                           L NE  
Sbjct: 370 GRLVFDLILEKNVVCWNSMVGGYSINGRLEEXEELFELIPEKNDXSWGTIJAGYLENEQC 429

Query: 417 --TLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDV---YKIQPGPEH 471
              L+VF ++L SG  PN  TF  +L AC+    + +G  +   +  +   Y I  G   
Sbjct: 430 EKVLEVFNTLLVSGQTPNKSTFSSVLCACASIASLDKGMNVHGKIIKLGIQYDIFVG--- 486

Query: 472 YVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGAL---LGACGFC-------EGNAEIA 521
             ++ ++  + G I  +++   R+P E +   W  +   L   GF        E     +
Sbjct: 487 -TALTDMYAKCGDIGSSKQVFERMP-EKNEISWTVMIQGLAESGFAVESLILFEEMERTS 544

Query: 522 EHAAKRLLELDPLNAPAHVVLCN 544
           E A   L+ L  L A +H  L +
Sbjct: 545 EVAPNELMLLSVLFACSHCGLVD 567



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 97/324 (29%), Positives = 155/324 (47%), Gaps = 37/324 (11%)

Query: 220 FIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSV 279
           F E+  I    +  ++   N MI+ Y+++G L +A+ LFD +P R+E+SW+++I G +  
Sbjct: 72  FAEIDQIVKEFDGSDLVVSNCMISAYVQWGNLVQARLLFDEMPERNEVSWSALISGLMKY 131

Query: 280 GQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLF 339
           G+V  + + F   P ++ V+WTA ISG V+N L  EA  LF  +   GV P + TF+ + 
Sbjct: 132 GRVEESMWYFERNPFQNVVSWTAAISGFVRNGLNFEALKLFFRLLESGVRPNDVTFTSVV 191

Query: 340 GAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLV 399
            A G   +  LG  I  +++K   E  L + N LI++  + G ID A  +F  M  RD+V
Sbjct: 192 RACGELGDFGLGMSILGLVVKAGFEHYLSVSNSLITLSLRMGEIDLARRVFDRMEKRDVV 251

Query: 400 -------------------------------SWNSMVMGFSHHGLANETLKVFESMLESG 428
                                          SW++M+  +S  G A E LK+F  M++ G
Sbjct: 252 SWTAILDAYVETGDLREARRIFDEMPERNEISWSAMIARYSQSGYAEEALKLFSKMVQEG 311

Query: 429 THPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYV--SMINLLGRAGKIK 486
             PN   F   LSA +    +S G    N    V KI    + ++  S+I+L  + GK  
Sbjct: 312 FKPNISCFACTLSALASLRALSAG---INIHGHVTKIGIDKDVFIGSSLIDLYCKCGKPD 368

Query: 487 EAEEFVLRLPFEPDHRIWGALLGA 510
           +    V  L  E +   W +++G 
Sbjct: 369 DG-RLVFDLILEKNVVCWNSMVGG 391


>gi|357113684|ref|XP_003558631.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Brachypodium distachyon]
          Length = 802

 Score =  342 bits (878), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 205/612 (33%), Positives = 324/612 (52%), Gaps = 47/612 (7%)

Query: 29  EAKALFQLMP--QRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADA 86
           EA+ LF  +P  QRNV ++N++LS + ++GRL++AR +F EMPER+ VSWT M+ GL   
Sbjct: 81  EARRLFDEIPAAQRNVFTWNSLLSLYAKSGRLADARAVFAEMPERDPVSWTVMVVGLNRV 140

Query: 87  GRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKV---FNSMPIKNVIS-----W 138
           GR  EA K+F +M    +      +  ++ +    EAR V    +S  +K  +S      
Sbjct: 141 GRFGEAIKMFLDMVTDGLSPTQFTLTNVLSSCAATEARGVGRKVHSFVVKLGLSSCVPVA 200

Query: 139 NAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVV 198
           N+++  Y +C     A  +FE M ER+V +W +M+S     G ++    LF  MP + +V
Sbjct: 201 NSVLNMYGKCGDAETARAVFERMPERSVSSWNAMVSLDAHLGRMDLALSLFENMPDRTIV 260

Query: 199 SWTAMIGGFAWNGFHKESLLLFIEM----------------------KGICDNGNNCNV- 235
           SW A+I G+  NG + ++L  F  M                       G+   G   +  
Sbjct: 261 SWNAVIAGYNQNGLNAKALWFFSRMLSYSTMAPDEFTITSVLSACANLGMVSIGKQVHAY 320

Query: 236 ----------QSCNSMINGYIRFGRLEEAQNLFDTVPVRD--EISWTSMIDGYLSVGQVS 283
                     Q  N++I+ Y + G +E A+ +     + D   IS+T++++GY+ +G + 
Sbjct: 321 ILRSRMPYIGQVTNALISMYAKSGSVENARGVMQQAVMADLNVISFTALLEGYVKLGDMK 380

Query: 284 NAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAG 343
           +A  +F  M +RD VAWTAMI G  QN    EA  LF  M   G  P + T + +     
Sbjct: 381 HAREMFDVMSNRDVVAWTAMIVGYEQNGHNDEAMELFRLMIRSGPEPNSYTVAAVLSVCA 440

Query: 344 ATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSR-DLVSWN 402
           + A ++ G+QIHC  +++  E    + N +++MYA+ G +  A  +F  +  R + V+W 
Sbjct: 441 SLACLEYGKQIHCKAIRSLQEQSSSVSNSIVTMYARSGSLPWARRVFDRVHWRKETVTWT 500

Query: 403 SMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDV 462
           SM++  + HGL  + + +FE ML  G  P+ +TF+G+LSAC+H G V  G   F  + D 
Sbjct: 501 SMIVALAQHGLGEDAVGLFEEMLRVGVKPDRITFVGVLSACTHVGFVDEGKRYFQQLQDK 560

Query: 463 YKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAE 522
           + I P   HY  M++LL RAG   EA+EF+ ++P EPD   WG+LL AC     NA++AE
Sbjct: 561 HGIVPEMSHYACMVDLLARAGLFSEAQEFIQQMPVEPDAIAWGSLLSACRV-HKNADLAE 619

Query: 523 HAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGI 582
            AA++LL +DP N+ A+  L N+Y+A GR  +  K+      K V+K  G SW      +
Sbjct: 620 LAAEKLLSIDPGNSGAYSALSNVYSACGRWNDAAKIWKRRKDKSVKKETGFSWTHIGNRV 679

Query: 583 QMFLSGDKIPAQ 594
            +F + D +  Q
Sbjct: 680 HVFGADDVLHPQ 691



 Score =  142 bits (357), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 119/461 (25%), Positives = 214/461 (46%), Gaps = 27/461 (5%)

Query: 16  SSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVS 75
           S +  Y K G  + A+A+F+ MP+R+V S+NAM+S     GR+  A  LFE MP+R +VS
Sbjct: 202 SVLNMYGKCGDAETARAVFERMPERSVSSWNAMVSLDAHLGRMDLALSLFENMPDRTIVS 261

Query: 76  WTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVV----------GLIRNGELNEARK 125
           W A+I G    G   +A   F  M   + ++ +   +          G++  G+   A  
Sbjct: 262 WNAVIAGYNQNGLNAKALWFFSRMLSYSTMAPDEFTITSVLSACANLGMVSIGKQVHAYI 321

Query: 126 VFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEE--MEERNVVTWTSMISGYCRAGEVE 183
           + + MP    ++ NA+I+ Y +   +  A  + ++  M + NV+++T+++ GY + G+++
Sbjct: 322 LRSRMPYIGQVT-NALISMYAKSGSVENARGVMQQAVMADLNVISFTALLEGYVKLGDMK 380

Query: 184 EGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMIN 243
               +F  M  ++VV+WTAMI G+  NG + E++ LF  M       N+  V +  S+  
Sbjct: 381 HAREMFDVMSNRDVVAWTAMIVGYEQNGHNDEAMELFRLMIRSGPEPNSYTVAAVLSVCA 440

Query: 244 GY--IRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDR-DAVAW 300
               + +G+    + +         +S  S++  Y   G +  A  +F  +  R + V W
Sbjct: 441 SLACLEYGKQIHCKAIRSLQEQSSSVS-NSIVTMYARSGSLPWARRVFDRVHWRKETVTW 499

Query: 301 TAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMK 360
           T+MI  L Q+ L  +A  LF EM   GV P   TF  +  A      +D G++      +
Sbjct: 500 TSMIVALAQHGLGEDAVGLFEEMLRVGVKPDRITFVGVLSACTHVGFVDEGKRY---FQQ 556

Query: 361 TESESDLILE----NCLISMYAKCGVIDNAYNIFSNM-VSRDLVSWNSMVMGFSHHGLAN 415
            + +  ++ E     C++ + A+ G+   A      M V  D ++W S++     H  A+
Sbjct: 557 LQDKHGIVPEMSHYACMVDLLARAGLFSEAQEFIQQMPVEPDAIAWGSLLSACRVHKNAD 616

Query: 416 ETLKVFESML--ESGTHPNSVTFLGILSACSHAGLVSRGWE 454
                 E +L  + G          + SAC      ++ W+
Sbjct: 617 LAELAAEKLLSIDPGNSGAYSALSNVYSACGRWNDAAKIWK 657



 Score =  125 bits (314), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 75/257 (29%), Positives = 129/257 (50%), Gaps = 39/257 (15%)

Query: 238 CNSMINGYIRFGR-----LEEAQNLFDTVPV--RDEISWTSMIDGYLSVGQVSNAYYLFH 290
           CN++++ Y            EA+ LFD +P   R+  +W S++  Y   G++++A  +F 
Sbjct: 61  CNNLLSYYAGPAAGGGGGFREARRLFDEIPAAQRNVFTWNSLLSLYAKSGRLADARAVFA 120

Query: 291 NMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDL 350
            MP+RD V+WT M+ GL +   F EA  +F++M   G+ P   T + +  +  AT    +
Sbjct: 121 EMPERDPVSWTVMVVGLNRVGRFGEAIKMFLDMVTDGLSPTQFTLTNVLSSCAATEARGV 180

Query: 351 GRQIHCVLMKTESESDLILENCLISMYAKC------------------------------ 380
           GR++H  ++K    S + + N +++MY KC                              
Sbjct: 181 GRKVHSFVVKLGLSSCVPVANSVLNMYGKCGDAETARAVFERMPERSVSSWNAMVSLDAH 240

Query: 381 -GVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGT-HPNSVTFLG 438
            G +D A ++F NM  R +VSWN+++ G++ +GL  + L  F  ML   T  P+  T   
Sbjct: 241 LGRMDLALSLFENMPDRTIVSWNAVIAGYNQNGLNAKALWFFSRMLSYSTMAPDEFTITS 300

Query: 439 ILSACSHAGLVSRGWEL 455
           +LSAC++ G+VS G ++
Sbjct: 301 VLSACANLGMVSIGKQV 317


>gi|356502620|ref|XP_003520116.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Glycine max]
          Length = 785

 Score =  342 bits (878), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 206/618 (33%), Positives = 327/618 (52%), Gaps = 45/618 (7%)

Query: 21  YSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMI 80
           Y K G   +A  LF  MP +   S+N +LS   + G L  ARR+F+E+P+ + VSWT MI
Sbjct: 58  YVKTGSSSDAHRLFDEMPLKTTFSWNTILSAHAKAGNLDSARRVFDEIPQPDSVSWTTMI 117

Query: 81  CGLADAGRVCEARKLFEEM------PER----NVVS-------------WNSMVVGL--- 114
            G    G    A   F  M      P +    NV++              +S VV L   
Sbjct: 118 VGYNHLGLFKSAVHAFLRMVSSGISPTQFTFTNVLASCAAAQALDVGKKVHSFVVKLGQS 177

Query: 115 ----IRNGELNE---------ARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEM 161
               + N  LN          A+ VF+ M +K+  +WN MI+ +++ C    A+ LF++M
Sbjct: 178 GVVPVANSLLNMYAKCGDSVMAKVVFDRMRLKDTSTWNTMISMHMQFCQFDLALALFDQM 237

Query: 162 EERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNG-FHKESLLLF 220
            + ++V+W S+I+GYC  G        F  M + + +       G   +   ++ESL L 
Sbjct: 238 TDPDIVSWNSIITGYCHQGYDIRALETFSFMLKSSSLKPDKFTLGSVLSACANRESLKLG 297

Query: 221 IEMKG-ICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTV--PVRDEISWTSMIDGYL 277
            ++   I     +      N++I+ Y + G +E A  + +    P  + I++TS++DGY 
Sbjct: 298 KQIHAHIVRADVDIAGAVGNALISMYAKSGAVEVAHRIVEITGTPSLNVIAFTSLLDGYF 357

Query: 278 SVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSV 337
            +G +  A  +F ++  RD VAWTAMI G  QN L  +A  LF  M   G  P N T + 
Sbjct: 358 KIGDIDPARAIFDSLKHRDVVAWTAMIVGYAQNGLISDALVLFRLMIREGPKPNNYTLAA 417

Query: 338 LFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVS-R 396
           +     + A++D G+Q+H V ++ E  S + + N LI+MY++ G I +A  IF+++ S R
Sbjct: 418 VLSVISSLASLDHGKQLHAVAIRLEEVSSVSVGNALITMYSRSGSIKDARKIFNHICSYR 477

Query: 397 DLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELF 456
           D ++W SM++  + HGL NE +++FE ML     P+ +T++G+LSAC+H GLV +G   F
Sbjct: 478 DTLTWTSMILSLAQHGLGNEAIELFEKMLRINLKPDHITYVGVLSACTHVGLVEQGKSYF 537

Query: 457 NAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEG 516
           N M +V+ I+P   HY  MI+LLGRAG ++EA  F+  +P EPD   WG+LL +C     
Sbjct: 538 NLMKNVHNIEPTSSHYACMIDLLGRAGLLEEAYNFIRNMPIEPDVVAWGSLLSSCR-VHK 596

Query: 517 NAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWL 576
             ++A+ AA++LL +DP N+ A++ L N  +A G+  +  K+R  M  K V+K  G SW+
Sbjct: 597 YVDLAKVAAEKLLLIDPNNSGAYLALANTLSACGKWEDAAKVRKSMKDKAVKKEQGFSWV 656

Query: 577 MRNGGIQMFLSGDKIPAQ 594
                + +F   D +  Q
Sbjct: 657 QIKNKVHIFGVEDALHPQ 674



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 68/238 (28%), Positives = 116/238 (48%), Gaps = 32/238 (13%)

Query: 239 NSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAV 298
           N+++N Y++ G   +A  LFD +P++   SW +++  +   G + +A  +F  +P  D+V
Sbjct: 52  NNLLNLYVKTGSSSDAHRLFDEMPLKTTFSWNTILSAHAKAGNLDSARRVFDEIPQPDSV 111

Query: 299 AWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVL 358
           +WT MI G     LF  A + F+ M + G+ P   TF+ +  +  A   +D+G+++H  +
Sbjct: 112 SWTTMIVGYNHLGLFKSAVHAFLRMVSSGISPTQFTFTNVLASCAAAQALDVGKKVHSFV 171

Query: 359 MKTESESDLILENCLISMYAKCG-------------------------------VIDNAY 387
           +K      + + N L++MYAKCG                                 D A 
Sbjct: 172 VKLGQSGVVPVANSLLNMYAKCGDSVMAKVVFDRMRLKDTSTWNTMISMHMQFCQFDLAL 231

Query: 388 NIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGT-HPNSVTFLGILSACS 444
            +F  M   D+VSWNS++ G+ H G     L+ F  ML+S +  P+  T   +LSAC+
Sbjct: 232 ALFDQMTDPDIVSWNSIITGYCHQGYDIRALETFSFMLKSSSLKPDKFTLGSVLSACA 289



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 77/283 (27%), Positives = 131/283 (46%), Gaps = 51/283 (18%)

Query: 7   PKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFE 66
           P   V+  TS +  Y K G ID A+A+F  +  R+VV++ AM+ G+ QNG +S+A  LF 
Sbjct: 342 PSLNVIAFTSLLDGYFKIGDIDPARAIFDSLKHRDVVAWTAMIVGYAQNGLISDALVLFR 401

Query: 67  EM----PERNVVSWTAMICGLADAGRVCEARKL------FEEMPERNVVSWNSMVVGLIR 116
            M    P+ N  +  A++  ++    +   ++L       EE+   +V   N+++    R
Sbjct: 402 LMIREGPKPNNYTLAAVLSVISSLASLDHGKQLHAVAIRLEEVSSVSV--GNALITMYSR 459

Query: 117 NGELNEARKVFNSM-PIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNV----VTWTS 171
           +G + +ARK+FN +   ++ ++W +MI    +  +  EAI LFE+M   N+    +T+  
Sbjct: 460 SGSIKDARKIFNHICSYRDTLTWTSMILSLAQHGLGNEAIELFEKMLRINLKPDHITYVG 519

Query: 172 MISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGN 231
           ++S     G VE+G   F  M  KNV +       +A                       
Sbjct: 520 VLSACTHVGLVEQGKSYFNLM--KNVHNIEPTSSHYA----------------------- 554

Query: 232 NCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVR-DEISWTSMI 273
                    MI+   R G LEEA N    +P+  D ++W S++
Sbjct: 555 --------CMIDLLGRAGLLEEAYNFIRNMPIEPDVVAWGSLL 589


>gi|255559140|ref|XP_002520592.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223540252|gb|EEF41825.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 525

 Score =  342 bits (876), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 171/422 (40%), Positives = 274/422 (64%), Gaps = 7/422 (1%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWT 77
           I+ YS+ G  D+AK LF  MP +N+VS+N+ML+G+ QNG++S A +LF EM ER+VVSW 
Sbjct: 109 ISGYSREGRYDDAKRLFNEMPVKNIVSWNSMLAGYTQNGQMSLALQLFHEMLERDVVSWN 168

Query: 78  AMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVIS 137
            M+ G  + G +  A + F+++PE N+VSW +M+ G  R G+L EAR++F+ MP KNV+S
Sbjct: 169 LMVDGFVELGDLDSAWEFFKKVPEPNIVSWVTMLYGFARKGKLLEARRLFDQMPSKNVVS 228

Query: 138 WNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNV 197
           WNAMI+ YV+   + EA  LFEEM +R+ V+WT+MI+GY RAG+++E      ++P KN+
Sbjct: 229 WNAMISAYVQSRQIDEAEKLFEEMPKRDSVSWTTMINGYVRAGKLDEARKTLSKLPYKNI 288

Query: 198 VSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNL 257
            + TAMI G+       E+  +F E+ G  D      +   N+M+ GY + GR++EA +L
Sbjct: 289 AAQTAMISGYIKYNKIDEARQIFNEI-GTPD------MVCFNTMLAGYTQCGRVDEAIHL 341

Query: 258 FDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEAT 317
           F+ +  +D +SW +M+  Y  VGQ+  A  +F  M +R+ V+W ++ISG + + ++++A 
Sbjct: 342 FEQMVKKDIVSWNTMVAAYAQVGQMERALKVFKEMGERNLVSWNSLISGFMLHGMYLDAL 401

Query: 318 YLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMY 377
           + F+ M+  G  P  +TF+    +    A + +GRQ+H +++K+   +DL + N LI+MY
Sbjct: 402 WCFVLMQHEGKKPDQSTFACALSSCAIVAALQVGRQLHHLVIKSGYINDLFVCNALITMY 461

Query: 378 AKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFL 437
           AKCG I  A  +F  + + D+VSWNS++ G++ +G   E L +FE M  +G  P+ VTF+
Sbjct: 462 AKCGKILEAKLVFKGICNADVVSWNSLIGGYALNGCGEEALTLFEEMKLAGVVPDQVTFI 521

Query: 438 GI 439
           G+
Sbjct: 522 GV 523



 Score =  312 bits (799), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 175/514 (34%), Positives = 289/514 (56%), Gaps = 29/514 (5%)

Query: 1   MSERNHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSE 60
           MS+RN      V   S I+ Y+K G + +A+ LF  MP RN+VS+N M++G+L N ++ E
Sbjct: 1   MSQRN-----TVTYNSMISAYAKNGRVIDARVLFDKMPCRNLVSWNTMIAGYLHNNKVDE 55

Query: 61  ARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMP---ERNVVSWNSMVVGLIRN 117
           A  LF +MP R++ SWT MI      G + +A++L   +P   +++   WN+M+ G  R 
Sbjct: 56  AYELFVKMPRRDLFSWTLMITCYTQNGMLEKAKQLLNSLPCNYKKDAACWNAMISGYSRE 115

Query: 118 GELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYC 177
           G  ++A+++FN MP+KN++SWN+M+AGY +   M  A+ LF EM ER+VV+W  M+ G+ 
Sbjct: 116 GRYDDAKRLFNEMPVKNIVSWNSMLAGYTQNGQMSLALQLFHEMLERDVVSWNLMVDGFV 175

Query: 178 RAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQS 237
             G+++  +  F+++P  N+VSW  M+ GFA  G   E+  LF +M        + NV S
Sbjct: 176 ELGDLDSAWEFFKKVPEPNIVSWVTMLYGFARKGKLLEARRLFDQMP-------SKNVVS 228

Query: 238 CNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDA 297
            N+MI+ Y++  +++EA+ LF+ +P RD +SWT+MI+GY+  G++  A      +P ++ 
Sbjct: 229 WNAMISAYVQSRQIDEAEKLFEEMPKRDSVSWTTMINGYVRAGKLDEARKTLSKLPYKNI 288

Query: 298 VAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCV 357
            A TAMISG ++     EA  +F E+   G P +   F+ +         +D    IH  
Sbjct: 289 AAQTAMISGYIKYNKIDEARQIFNEI---GTPDM-VCFNTMLAGYTQCGRVD--EAIH-- 340

Query: 358 LMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANET 417
           L +   + D++  N +++ YA+ G ++ A  +F  M  R+LVSWNS++ GF  HG+  + 
Sbjct: 341 LFEQMVKKDIVSWNTMVAAYAQVGQMERALKVFKEMGERNLVSWNSLISGFMLHGMYLDA 400

Query: 418 LKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYV--SM 475
           L  F  M   G  P+  TF   LS+C+    +  G +L + +     I    + +V  ++
Sbjct: 401 LWCFVLMQHEGKKPDQSTFACALSSCAIVAALQVGRQLHHLVIKSGYIN---DLFVCNAL 457

Query: 476 INLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLG 509
           I +  + GKI EA + V +     D   W +L+G
Sbjct: 458 ITMYAKCGKILEA-KLVFKGICNADVVSWNSLIG 490



 Score =  219 bits (557), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 111/333 (33%), Positives = 198/333 (59%), Gaps = 7/333 (2%)

Query: 7   PKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFE 66
           P+  +V   + +  ++++G + EA+ LF  MP +NVVS+NAM+S ++Q+ ++ EA +LFE
Sbjct: 191 PEPNIVSWVTMLYGFARKGKLLEARRLFDQMPSKNVVSWNAMISAYVQSRQIDEAEKLFE 250

Query: 67  EMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKV 126
           EMP+R+ VSWT MI G   AG++ EARK   ++P +N+ +  +M+ G I+  +++EAR++
Sbjct: 251 EMPKRDSVSWTTMINGYVRAGKLDEARKTLSKLPYKNIAAQTAMISGYIKYNKIDEARQI 310

Query: 127 FNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGY 186
           FN +   +++ +N M+AGY +C  + EAI LFE+M ++++V+W +M++ Y + G++E   
Sbjct: 311 FNEIGTPDMVCFNTMLAGYTQCGRVDEAIHLFEQMVKKDIVSWNTMVAAYAQVGQMERAL 370

Query: 187 CLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNN----CNVQSCNSMI 242
            +F+ M  +N+VSW ++I GF  +G + ++L  F+ M+      +     C + SC   I
Sbjct: 371 KVFKEMGERNLVSWNSLISGFMLHGMYLDALWCFVLMQHEGKKPDQSTFACALSSC--AI 428

Query: 243 NGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTA 302
              ++ GR +    +  +  + D     ++I  Y   G++  A  +F  + + D V+W +
Sbjct: 429 VAALQVGR-QLHHLVIKSGYINDLFVCNALITMYAKCGKILEAKLVFKGICNADVVSWNS 487

Query: 303 MISGLVQNELFVEATYLFMEMRAHGVPPLNATF 335
           +I G   N    EA  LF EM+  GV P   TF
Sbjct: 488 LIGGYALNGCGEEALTLFEEMKLAGVVPDQVTF 520


>gi|148909481|gb|ABR17838.1| unknown [Picea sitchensis]
          Length = 795

 Score =  342 bits (876), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 203/614 (33%), Positives = 319/614 (51%), Gaps = 61/614 (9%)

Query: 39  QRNVVSYNAMLSGFLQNGRLSEARRLFEEM------PERNVVSWTAMICGLADAGRVCEA 92
           + N V +   + G+++NG  ++A RL+ +M      P++ V       CG      +   
Sbjct: 82  RNNAVVWKETIIGYVKNGFWNKALRLYYQMQRTGINPDKLVFLSVIKACG--SQSDLQAG 139

Query: 93  RKLFEEMPER----NVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVEC 148
           RK+ E++  R    +V+   ++     + G L  AR+VF+ MP ++V+SWNA+IAGY + 
Sbjct: 140 RKVHEDIIARGFESDVIVGTALASMYTKCGSLENARQVFDRMPKRDVVSWNAIIAGYSQN 199

Query: 149 CMMGEAIVLFEEME---------------------------------------ERNVVTW 169
               EA+ LF EM+                                       E +V+  
Sbjct: 200 GQPYEALALFSEMQVNGIKPNSSTLVSVMPVCAHLLALEQGKQIHCYAIRSGIESDVLVV 259

Query: 170 TSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDN 229
             +++ Y + G V   + LF RMP ++V SW A+IGG++ N  H E+L  F  M+     
Sbjct: 260 NGLVNMYAKCGNVNTAHKLFERMPIRDVASWNAIIGGYSLNSQHHEALAFFNRMQ---VR 316

Query: 230 GNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVR-----DEISWTSMIDGYLSVGQVSN 284
           G   N  +  S++        LE+ Q +     +R     +++   ++++ Y   G V++
Sbjct: 317 GIKPNSITMVSVLPACAHLFALEQGQQIHGYA-IRSGFESNDVVGNALVNMYAKCGNVNS 375

Query: 285 AYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGA 344
           AY LF  MP ++ VAW A+ISG  Q+    EA  LF+EM+A G+ P +     +  A   
Sbjct: 376 AYKLFERMPKKNVVAWNAIISGYSQHGHPHEALALFIEMQAQGIKPDSFAIVSVLPACAH 435

Query: 345 TANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSM 404
              ++ G+QIH   +++  ES++++   L+ +YAKCG ++ A  +F  M  +D+VSW +M
Sbjct: 436 FLALEQGKQIHGYTIRSGFESNVVVGTGLVDIYAKCGNVNTAQKLFERMPEQDVVSWTTM 495

Query: 405 VMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYK 464
           ++ +  HG   + L +F  M E+GT  + + F  IL+ACSHAGLV +G + F  M   Y 
Sbjct: 496 ILAYGIHGHGEDALALFSKMQETGTKLDHIAFTAILTACSHAGLVDQGLQYFQCMKSDYG 555

Query: 465 IQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHA 524
           + P  EHY  +++LLGRAG + EA   +  +  EPD  +WGALLGAC     N E+ E A
Sbjct: 556 LAPKLEHYACLVDLLGRAGHLDEANGIIKNMSLEPDANVWGALLGACRI-HCNIELGEQA 614

Query: 525 AKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQM 584
           AK L ELDP NA  +V+L NIYA + R  +  KLR  M  KGV+K PGCS +  +  +Q 
Sbjct: 615 AKHLFELDPDNAGYYVLLSNIYAEAQRWEDVAKLRKMMKEKGVKKQPGCSVVAVHRDVQT 674

Query: 585 FLSGDKIPAQVAEI 598
           FL GD+   Q  +I
Sbjct: 675 FLVGDRTHPQSEQI 688



 Score =  169 bits (427), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 127/454 (27%), Positives = 212/454 (46%), Gaps = 62/454 (13%)

Query: 8   KSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEE 67
           +S V+  T+  + Y+K G ++ A+ +F  MP+R+VVS+NA+++G+ QNG+  EA  LF E
Sbjct: 152 ESDVIVGTALASMYTKCGSLENARQVFDRMPKRDVVSWNAIIAGYSQNGQPYEALALFSE 211

Query: 68  MP---------------------------------------ERNVVSWTAMICGLADAGR 88
           M                                        E +V+    ++   A  G 
Sbjct: 212 MQVNGIKPNSSTLVSVMPVCAHLLALEQGKQIHCYAIRSGIESDVLVVNGLVNMYAKCGN 271

Query: 89  VCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVEC 148
           V  A KLFE MP R+V SWN+++ G   N + +EA   FN M ++ +   +  +   +  
Sbjct: 272 VNTAHKLFERMPIRDVASWNAIIGGYSLNSQHHEALAFFNRMQVRGIKPNSITMVSVLPA 331

Query: 149 CMMGEAIVLFEEME--------ERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSW 200
           C    A+   +++         E N V   ++++ Y + G V   Y LF RMP+KNVV+W
Sbjct: 332 CAHLFALEQGQQIHGYAIRSGFESNDVVGNALVNMYAKCGNVNSAYKLFERMPKKNVVAW 391

Query: 201 TAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDT 260
            A+I G++ +G   E+L LFIEM+     G   +  +  S++     F  LE+ + +   
Sbjct: 392 NAIISGYSQHGHPHEALALFIEMQA---QGIKPDSFAIVSVLPACAHFLALEQGKQIHGY 448

Query: 261 VPVR-----DEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVE 315
             +R     + +  T ++D Y   G V+ A  LF  MP++D V+WT MI     +    +
Sbjct: 449 T-IRSGFESNVVVGTGLVDIYAKCGNVNTAQKLFERMPEQDVVSWTTMILAYGIHGHGED 507

Query: 316 ATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQ-IHCVLMKTESESDLILEN--C 372
           A  LF +M+  G    +  F+ +  A      +D G Q   C  MK++      LE+  C
Sbjct: 508 ALALFSKMQETGTKLDHIAFTAILTACSHAGLVDQGLQYFQC--MKSDYGLAPKLEHYAC 565

Query: 373 LISMYAKCGVIDNAYNIFSNM-VSRDLVSWNSMV 405
           L+ +  + G +D A  I  NM +  D   W +++
Sbjct: 566 LVDLLGRAGHLDEANGIIKNMSLEPDANVWGALL 599



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 89/354 (25%), Positives = 158/354 (44%), Gaps = 56/354 (15%)

Query: 4   RNHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARR 63
           R+  +S V+ +   +  Y+K G ++ A  LF+ MP R+V S+NA++ G+  N +  EA  
Sbjct: 249 RSGIESDVLVVNGLVNMYAKCGNVNTAHKLFERMPIRDVASWNAIIGGYSLNSQHHEALA 308

Query: 64  LFEEMPER----NVVSWTAMICGLADAGRVCEARKL----FEEMPERNVVSWNSMVVGLI 115
            F  M  R    N ++  +++   A    + + +++         E N V  N++V    
Sbjct: 309 FFNRMQVRGIKPNSITMVSVLPACAHLFALEQGQQIHGYAIRSGFESNDVVGNALVNMYA 368

Query: 116 RNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEME------------- 162
           + G +N A K+F  MP KNV++WNA+I+GY +     EA+ LF EM+             
Sbjct: 369 KCGNVNSAYKLFERMPKKNVVAWNAIISGYSQHGHPHEALALFIEMQAQGIKPDSFAIVS 428

Query: 163 --------------------------ERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKN 196
                                     E NVV  T ++  Y + G V     LF RMP ++
Sbjct: 429 VLPACAHFLALEQGKQIHGYTIRSGFESNVVVGTGLVDIYAKCGNVNTAQKLFERMPEQD 488

Query: 197 VVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQN 256
           VVSWT MI  +  +G  +++L LF +M+   + G   +  +  +++      G +++   
Sbjct: 489 VVSWTTMILAYGIHGHGEDALALFSKMQ---ETGTKLDHIAFTAILTACSHAGLVDQGLQ 545

Query: 257 LFDTVPVRDEIS-----WTSMIDGYLSVGQVSNAYYLFHNMP-DRDAVAWTAMI 304
            F  +     ++     +  ++D     G +  A  +  NM  + DA  W A++
Sbjct: 546 YFQCMKSDYGLAPKLEHYACLVDLLGRAGHLDEANGIIKNMSLEPDANVWGALL 599


>gi|224085073|ref|XP_002307479.1| predicted protein [Populus trichocarpa]
 gi|222856928|gb|EEE94475.1| predicted protein [Populus trichocarpa]
          Length = 1026

 Score =  342 bits (876), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 209/638 (32%), Positives = 347/638 (54%), Gaps = 59/638 (9%)

Query: 15  TSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEM------ 68
           +S ++ Y+K G ++ AK +F  + ++NVV +NAML G++QNG  +E   LF  M      
Sbjct: 366 SSLVSMYAKCGKMEAAKKVFDTLNEQNVVLWNAMLGGYVQNGYANEVMELFFNMKSCGFY 425

Query: 69  PE---------------------------------RNVVSWTAMICGLADAGRVCEARKL 95
           P+                                  N+    A++   A +G + +AR+ 
Sbjct: 426 PDDFTYSSILSACACLKYLDLGHQLHSVIIKNKFASNLFVGNALVDMYAKSGALEDARQQ 485

Query: 96  FEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCM----- 150
           FE +  R+ VSWN ++VG ++  +  EA  +F  M +  ++     +A  +  C      
Sbjct: 486 FELIRNRDNVSWNVIIVGYVQEEDEVEAFHLFRRMNLLGILPDEVSLASILSACASVRGL 545

Query: 151 -MGEAI--VLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGF 207
             G+ +  +  +  +E  + + +S+I  Y + G ++  + +   MP ++VVS  A+I G+
Sbjct: 546 EQGKQVHCLSVKTGQETKLYSGSSLIDMYAKCGAIDSAHKILACMPERSVVSMNALIAGY 605

Query: 208 AWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMING-----YIRFGRLEEAQNLFDTVP 262
           A     ++++ LF +M      G N    +  S+++       +  GR   +  L   + 
Sbjct: 606 AQINL-EQAVNLFRDM---LVEGINSTEITFASLLDACHEQQKLNLGRQIHSLILKMGLQ 661

Query: 263 VRDEISWTSMIDGYLSVGQVSNAYYLFHNMPD-RDAVAWTAMISGLVQNELFVEATYLFM 321
           + DE    S++  Y++  + ++A  LF    + + AV WTAMISGL QN+  V A  L+ 
Sbjct: 662 LDDEFLGVSLLGMYMNSLRTTDASVLFSEFSNPKSAVVWTAMISGLSQNDCSVVALQLYK 721

Query: 322 EMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCG 381
           EMR+  V P  ATF     A    ++I  G + H ++  T  +SD +  + L+ MYAKCG
Sbjct: 722 EMRSCNVLPDQATFVSALRACAVVSSIKDGTETHSLIFHTGFDSDELTSSALVDMYAKCG 781

Query: 382 VIDNAYNIFSNMV-SRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGIL 440
            + ++  +F  M   +D++SWNSM++GF+ +G A + L+VF+ M +S   P+ VTFLG+L
Sbjct: 782 DVKSSMQVFKEMSRKKDVISWNSMIVGFAKNGYAEDALRVFDEMKQSHVTPDDVTFLGVL 841

Query: 441 SACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPD 500
           +ACSH+G VS G  +F+ M ++Y +QP  +H   M++LLGR G +KEAEEF+ +L FEPD
Sbjct: 842 TACSHSGRVSEGRLIFDMMVNLYGMQPRADHCACMVDLLGRWGSLKEAEEFINKLNFEPD 901

Query: 501 HRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRM 560
            ++W  +LGAC    G+    + AA++L+EL+P N+  +V+L NIYAASG   E + LR 
Sbjct: 902 AKVWATMLGACRI-HGDDIRGQQAAEKLIELEPQNSSPYVLLSNIYAASGNWDEVNTLRR 960

Query: 561 DMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
           +M  KGV+K+PGCSW++      MF++GDK     +EI
Sbjct: 961 EMREKGVKKLPGCSWIVVGQETNMFVAGDKSHHSASEI 998



 Score =  196 bits (498), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 133/482 (27%), Positives = 226/482 (46%), Gaps = 76/482 (15%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEM----PERNV 73
           I  Y+K  F+ +A+++F    + + VS+ +M+ G+++ G   EA ++F+EM     E + 
Sbjct: 202 IGMYAKCNFLTDARSIFDGAVELDKVSWTSMIGGYIKVGLPEEAVKVFQEMEKVGQEPDQ 261

Query: 74  VSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIK 133
           V++  +I    D GR+  A  LF  MP RNVV+WN M+ G  + G   EA + F +M   
Sbjct: 262 VAFVTVINAYVDLGRLDNASDLFSRMPNRNVVAWNLMISGHAKGGYGVEAIEFFQNMRKA 321

Query: 134 NVISWNAMIAGYVECCMMGEA-----IVLFEEMEE---RNVVTWTSMISGYCRAGEVEEG 185
            + S  + +   +       A     +V  E +++    NV   +S++S Y + G++E  
Sbjct: 322 GIKSTRSTLGSVLSAIASLAALDFGLLVHAEALKQGLHSNVYVGSSLVSMYAKCGKMEAA 381

Query: 186 YCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKG-------------------- 225
             +F  +  +NVV W AM+GG+  NG+  E + LF  MK                     
Sbjct: 382 KKVFDTLNEQNVVLWNAMLGGYVQNGYANEVMELFFNMKSCGFYPDDFTYSSILSACACL 441

Query: 226 ------------ICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMI 273
                       I  N    N+   N++++ Y + G LE+A+  F+ +  RD +SW  +I
Sbjct: 442 KYLDLGHQLHSVIIKNKFASNLFVGNALVDMYAKSGALEDARQQFELIRNRDNVSWNVII 501

Query: 274 DGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNA 333
            GY                               VQ E  VEA +LF  M   G+ P   
Sbjct: 502 VGY-------------------------------VQEEDEVEAFHLFRRMNLLGILPDEV 530

Query: 334 TFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNM 393
           + + +  A  +   ++ G+Q+HC+ +KT  E+ L   + LI MYAKCG ID+A+ I + M
Sbjct: 531 SLASILSACASVRGLEQGKQVHCLSVKTGQETKLYSGSSLIDMYAKCGAIDSAHKILACM 590

Query: 394 VSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGW 453
             R +VS N+++ G++   L  + + +F  ML  G +   +TF  +L AC     ++ G 
Sbjct: 591 PERSVVSMNALIAGYAQINL-EQAVNLFRDMLVEGINSTEITFASLLDACHEQQKLNLGR 649

Query: 454 EL 455
           ++
Sbjct: 650 QI 651



 Score =  166 bits (419), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 134/530 (25%), Positives = 257/530 (48%), Gaps = 41/530 (7%)

Query: 45  YNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNV 104
           Y  +L   LQ  +  +   LF+E+P+R        +   +   ++  A+ L      + V
Sbjct: 44  YTHILQNCLQKSKQVKTHSLFDEIPQR--------LSQFSTTNKIIHAQSLKLGFWSKGV 95

Query: 105 VSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEER 164
           +  N +V    +  +++ A + F  +  K++++WN++++ + +       +  F  +   
Sbjct: 96  LG-NVIVDLYAKCADVDYAERAFKQLEDKDILAWNSILSMHSKQGFPHLVVKYFGLLWNS 154

Query: 165 NV----VTWTSMISGYCRAGEVEEG---YCLFRRMPRKNVVSWT-AMIGGFAWNGFHKES 216
            V     T+  ++S   R   V+ G   +C   +M  +++     A+IG +A   F    
Sbjct: 155 GVWPNEFTFAIVLSSCARLEMVKCGRQVHCNVVKMGFESISYCEGALIGMYAKCNF---- 210

Query: 217 LLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPV----RDEISWTSM 272
                + + I D     +  S  SMI GYI+ G  EEA  +F  +       D++++ ++
Sbjct: 211 ---LTDARSIFDGAVELDKVSWTSMIGGYIKVGLPEEAVKVFQEMEKVGQEPDQVAFVTV 267

Query: 273 IDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLN 332
           I+ Y+ +G++ NA  LF  MP+R+ VAW  MISG  +    VEA   F  MR  G+    
Sbjct: 268 INAYVDLGRLDNASDLFSRMPNRNVVAWNLMISGHAKGGYGVEAIEFFQNMRKAGIKSTR 327

Query: 333 ATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSN 392
           +T   +  A  + A +D G  +H   +K    S++ + + L+SMYAKCG ++ A  +F  
Sbjct: 328 STLGSVLSAIASLAALDFGLLVHAEALKQGLHSNVYVGSSLVSMYAKCGKMEAAKKVFDT 387

Query: 393 MVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRG 452
           +  +++V WN+M+ G+  +G ANE +++F +M   G +P+  T+  ILSAC+    +  G
Sbjct: 388 LNEQNVVLWNAMLGGYVQNGYANEVMELFFNMKSCGFYPDDFTYSSILSACACLKYLDLG 447

Query: 453 WELFNAMFDVYKIQPGPEHYV--SMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGA 510
            +L +    + K +     +V  +++++  ++G +++A +    L    D+  W  ++  
Sbjct: 448 HQLHSV---IIKNKFASNLFVGNALVDMYAKSGALEDARQ-QFELIRNRDNVSWNVII-- 501

Query: 511 CGFCEGNAEI-AEHAAKRLLELDPLNAPAHVVLCNIYA--ASGRHVEEHK 557
            G+ +   E+ A H  +R+  L  L  P  V L +I +  AS R +E+ K
Sbjct: 502 VGYVQEEDEVEAFHLFRRMNLLGIL--PDEVSLASILSACASVRGLEQGK 549



 Score = 62.0 bits (149), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 57/205 (27%), Positives = 101/205 (49%), Gaps = 26/205 (12%)

Query: 14  LTSS--ITKYSKRGFIDEAKALFQLMP-QRNVVSYNAMLSGFLQNGRLSEARRLFEEMPE 70
           LTSS  +  Y+K G +  +  +F+ M  +++V+S+N+M+ GF +NG   +A R+F+EM +
Sbjct: 768 LTSSALVDMYAKCGDVKSSMQVFKEMSRKKDVISWNSMIVGFAKNGYAEDALRVFDEMKQ 827

Query: 71  RNV----VSWTAMICGLADAGRVCEARKLFEEM-------PERNVVSWNSMVVGLIRNGE 119
            +V    V++  ++   + +GRV E R +F+ M       P  +  +   MV  L R G 
Sbjct: 828 SHVTPDDVTFLGVLTACSHSGRVSEGRLIFDMMVNLYGMQPRADHCA--CMVDLLGRWGS 885

Query: 120 LNEARKVFNSMPIK-NVISWNAMIAGYVECCMMGEAIVLFE------EMEERNVVTWTSM 172
           L EA +  N +  + +   W  M+     C + G+ I   +      E+E +N   +  +
Sbjct: 886 LKEAEEFINKLNFEPDAKVWATMLGA---CRIHGDDIRGQQAAEKLIELEPQNSSPYVLL 942

Query: 173 ISGYCRAGEVEEGYCLFRRMPRKNV 197
            + Y  +G  +E   L R M  K V
Sbjct: 943 SNIYAASGNWDEVNTLRREMREKGV 967


>gi|296082276|emb|CBI21281.3| unnamed protein product [Vitis vinifera]
          Length = 785

 Score =  341 bits (875), Expect = 6e-91,   Method: Compositional matrix adjust.
 Identities = 204/632 (32%), Positives = 335/632 (53%), Gaps = 58/632 (9%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWT 77
           +  + K G + +A+ LF+ MP +N VS N M+SG++++G L EAR+LF+ M ER  V+WT
Sbjct: 54  VGNFLKNGELSQARQLFEKMPHKNTVSTNMMISGYVKSGNLGEARKLFDGMVERTAVTWT 113

Query: 78  AMICGLADAGRVCEARKLFEEM----PERNVVSW-------------------------- 107
            +I G +   +  EA +LF +M     E + V++                          
Sbjct: 114 ILIGGYSQLNQFKEAFELFVQMQRCGTEPDYVTFVTLLSGCNGHEMGNQITQVQTQIIKL 173

Query: 108 ---------NSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMG-EAIVL 157
                    N++V    ++  L+ A ++F  MP  +  ++ A++     C  +G + IVL
Sbjct: 174 GYDSRLIVGNTLVDSYCKSNRLDLACQLFKEMPEIDSFTFAAVL-----CANIGLDDIVL 228

Query: 158 FEEMEER--------NVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAW 209
            +++           NV    +++  Y +   V +   LF  MP ++ VS+  +I G+AW
Sbjct: 229 GQQIHSFVIKTNFVWNVFVSNALLDFYSKHDSVIDARKLFDEMPEQDGVSYNVIISGYAW 288

Query: 210 NGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYI--RFGRLEEAQNLFDTVPVRDEI 267
           +G HK +  LF E++    +       +  S+ +  +    GR   AQ +  T    + +
Sbjct: 289 DGKHKYAFDLFRELQFTAFDRKQFPFATMLSIASNTLDWEMGRQIHAQTIVTTAD-SEIL 347

Query: 268 SWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHG 327
              S++D Y   G+   A  +F N+  R AV WTAMIS  VQ   + E   LF +MR   
Sbjct: 348 VGNSLVDMYAKCGKFEEAEMIFTNLTHRSAVPWTAMISAYVQKGFYEEGLQLFNKMRQAS 407

Query: 328 VPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAY 387
           V    ATF+ L  A+ + A++ LG+Q+H  ++K+   S++   + L+ +YAKCG I +A 
Sbjct: 408 VIADQATFASLLRASASIASLSLGKQLHSFIIKSGFMSNVFSGSALLDVYAKCGSIKDAV 467

Query: 388 NIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAG 447
             F  M  R++VSWN+M+  ++ +G A  TLK F+ M+ SG  P+SV+FLG+LSACSH+G
Sbjct: 468 QTFQEMPDRNIVSWNAMISAYAQNGEAEATLKSFKEMVLSGLQPDSVSFLGVLSACSHSG 527

Query: 448 LVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGAL 507
           LV  G   FN+M  +YK+ P  EHY S++++L R+G+  EAE+ +  +P +PD  +W ++
Sbjct: 528 LVEEGLWHFNSMTQIYKLDPRREHYASVVDMLCRSGRFNEAEKLMAEMPIDPDEIMWSSV 587

Query: 508 LGACGFCEGNAEIAEHAAKRLLELDPL-NAPAHVVLCNIYAASGRHVEEHKLRMDMGLKG 566
           L AC     N E+A  AA +L  ++ L +A  +V + NIYAA+G+     K+   M  +G
Sbjct: 588 LNACRI-HKNQELARRAADQLFNMEELRDAAPYVNMSNIYAAAGQWENVSKVHKAMRDRG 646

Query: 567 VRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
           V+K+P  SW+       MF + D+   Q+ EI
Sbjct: 647 VKKLPAYSWVEIKHETHMFSANDRCHPQIEEI 678



 Score =  181 bits (460), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 123/448 (27%), Positives = 215/448 (47%), Gaps = 56/448 (12%)

Query: 108 NSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVV 167
           N  V   ++NGEL++AR++F  MP KN +S N MI+GYV+   +GEA  LF+ M ER  V
Sbjct: 51  NFRVGNFLKNGELSQARQLFEKMPHKNTVSTNMMISGYVKSGNLGEARKLFDGMVERTAV 110

Query: 168 TWTSMISGYCRAGEVEEGYCLFRRMPR----KNVVSWTAMIGGFAWNGFHKESLLLFIEM 223
           TWT +I GY +  + +E + LF +M R     + V++  ++ G   NG    + +  ++ 
Sbjct: 111 TWTILIGGYSQLNQFKEAFELFVQMQRCGTEPDYVTFVTLLSG--CNGHEMGNQITQVQT 168

Query: 224 KGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWT------------- 270
           + I   G +  +   N++++ Y +  RL+ A  LF  +P  D  ++              
Sbjct: 169 Q-IIKLGYDSRLIVGNTLVDSYCKSNRLDLACQLFKEMPEIDSFTFAAVLCANIGLDDIV 227

Query: 271 ----------------------SMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLV 308
                                 +++D Y     V +A  LF  MP++D V++  +ISG  
Sbjct: 228 LGQQIHSFVIKTNFVWNVFVSNALLDFYSKHDSVIDARKLFDEMPEQDGVSYNVIISGYA 287

Query: 309 QNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLI 368
            +     A  LF E++          F+ +   A  T + ++GRQIH   + T ++S+++
Sbjct: 288 WDGKHKYAFDLFRELQFTAFDRKQFPFATMLSIASNTLDWEMGRQIHAQTIVTTADSEIL 347

Query: 369 LENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESG 428
           + N L+ MYAKCG  + A  IF+N+  R  V W +M+  +   G   E L++F  M ++ 
Sbjct: 348 VGNSLVDMYAKCGKFEEAEMIFTNLTHRSAVPWTAMISAYVQKGFYEEGLQLFNKMRQAS 407

Query: 429 THPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYV----SMINLLGRAGK 484
              +  TF  +L A +    +S G +L +     + I+ G    V    +++++  + G 
Sbjct: 408 VIADQATFASLLRASASIASLSLGKQLHS-----FIIKSGFMSNVFSGSALLDVYAKCGS 462

Query: 485 IKEAEEFVLRLPFEPDHRI--WGALLGA 510
           IK+A +    +   PD  I  W A++ A
Sbjct: 463 IKDAVQTFQEM---PDRNIVSWNAMISA 487



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 52/180 (28%), Positives = 86/180 (47%)

Query: 226 ICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNA 285
           I   G + +    N  +  +++ G L +A+ LF+ +P ++ +S   MI GY+  G +  A
Sbjct: 38  IVKTGFDPDTSRSNFRVGNFLKNGELSQARQLFEKMPHKNTVSTNMMISGYVKSGNLGEA 97

Query: 286 YYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGAT 345
             LF  M +R AV WT +I G  Q   F EA  LF++M+  G  P   TF  L       
Sbjct: 98  RKLFDGMVERTAVTWTILIGGYSQLNQFKEAFELFVQMQRCGTEPDYVTFVTLLSGCNGH 157

Query: 346 ANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMV 405
              +   Q+   ++K   +S LI+ N L+  Y K   +D A  +F  M   D  ++ +++
Sbjct: 158 EMGNQITQVQTQIIKLGYDSRLIVGNTLVDSYCKSNRLDLACQLFKEMPEIDSFTFAAVL 217



 Score = 46.2 bits (108), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 46/197 (23%), Positives = 86/197 (43%), Gaps = 19/197 (9%)

Query: 354 IHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGL 413
           I   ++KT  + D    N  +  + K G +  A  +F  M  ++ VS N M+ G+   G 
Sbjct: 34  IDARIVKTGFDPDTSRSNFRVGNFLKNGELSQARQLFEKMPHKNTVSTNMMISGYVKSGN 93

Query: 414 ANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYV 473
             E  K+F+ M+E      +VT+  ++   S        +ELF  M    +    P+ YV
Sbjct: 94  LGEARKLFDGMVER----TAVTWTILIGGYSQLNQFKEAFELFVQM---QRCGTEPD-YV 145

Query: 474 SMINLLG------RAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNA-EIAEHAAK 526
           + + LL          +I + +  +++L ++    +   L+ +  +C+ N  ++A    K
Sbjct: 146 TFVTLLSGCNGHEMGNQITQVQTQIIKLGYDSRLIVGNTLVDS--YCKSNRLDLACQLFK 203

Query: 527 RLLELDPLNAPAHVVLC 543
            + E+D     A  VLC
Sbjct: 204 EMPEIDSFTFAA--VLC 218


>gi|334186622|ref|NP_680717.2| tetratricopeptide repeat domain-containing protein [Arabidopsis
           thaliana]
 gi|357529479|sp|Q9M4P3.3|PP316_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g16835, mitochondrial; AltName: Full=Protein DYW10;
           Flags: Precursor
 gi|332658412|gb|AEE83812.1| tetratricopeptide repeat domain-containing protein [Arabidopsis
           thaliana]
          Length = 656

 Score =  341 bits (875), Expect = 6e-91,   Method: Compositional matrix adjust.
 Identities = 183/500 (36%), Positives = 288/500 (57%), Gaps = 10/500 (2%)

Query: 101 ERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYV-ECCMMGEAIVLFE 159
           +  +   N ++   +R+G+++ A +VF+ M  KN I+WN+++ G   +   M EA  LF+
Sbjct: 58  QDQIFPLNKIIARCVRSGDIDGALRVFHGMRAKNTITWNSLLIGISKDPSRMMEAHQLFD 117

Query: 160 EMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLL 219
           E+ E +  ++  M+S Y R    E+    F RMP K+  SW  MI G+A  G  +++  L
Sbjct: 118 EIPEPDTFSYNIMLSCYVRNVNFEKAQSFFDRMPFKDAASWNTMITGYARRGEMEKAREL 177

Query: 220 FIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSV 279
           F  M          N  S N+MI+GYI  G LE+A + F   PVR  ++WT+MI GY+  
Sbjct: 178 FYSMM-------EKNEVSWNAMISGYIECGDLEKASHFFKVAPVRGVVAWTAMITGYMKA 230

Query: 280 GQVSNAYYLFHNMP-DRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVL 338
            +V  A  +F +M  +++ V W AMISG V+N    +   LF  M   G+ P ++  S  
Sbjct: 231 KKVELAEAMFKDMTVNKNLVTWNAMISGYVENSRPEDGLKLFRAMLEEGIRPNSSGLSSA 290

Query: 339 FGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDL 398
                  + + LGRQIH ++ K+   +D+     LISMY KCG + +A+ +F  M  +D+
Sbjct: 291 LLGCSELSALQLGRQIHQIVSKSTLCNDVTALTSLISMYCKCGELGDAWKLFEVMKKKDV 350

Query: 399 VSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNA 458
           V+WN+M+ G++ HG A++ L +F  M+++   P+ +TF+ +L AC+HAGLV+ G   F +
Sbjct: 351 VAWNAMISGYAQHGNADKALCLFREMIDNKIRPDWITFVAVLLACNHAGLVNIGMAYFES 410

Query: 459 MFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNA 518
           M   YK++P P+HY  M++LLGRAGK++EA + +  +PF P   ++G LLGAC     N 
Sbjct: 411 MVRDYKVEPQPDHYTCMVDLLGRAGKLEEALKLIRSMPFRPHAAVFGTLLGACR-VHKNV 469

Query: 519 EIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMR 578
           E+AE AA++LL+L+  NA  +V L NIYA+  R  +  ++R  M    V KVPG SW+  
Sbjct: 470 ELAEFAAEKLLQLNSQNAAGYVQLANIYASKNRWEDVARVRKRMKESNVVKVPGYSWIEI 529

Query: 579 NGGIQMFLSGDKIPAQVAEI 598
              +  F S D+I  ++  I
Sbjct: 530 RNKVHHFRSSDRIHPELDSI 549



 Score =  172 bits (435), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 113/401 (28%), Positives = 190/401 (47%), Gaps = 51/401 (12%)

Query: 39  QRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLA-DAGRVCEARKLFE 97
           Q  +   N +++  +++G +  A R+F  M  +N ++W +++ G++ D  R+ EA +LF+
Sbjct: 58  QDQIFPLNKIIARCVRSGDIDGALRVFHGMRAKNTITWNSLLIGISKDPSRMMEAHQLFD 117

Query: 98  EMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVL 157
           E+PE +  S+N M+   +RN    +A+  F+ MP K+  SWN MI GY     M +A  L
Sbjct: 118 EIPEPDTFSYNIMLSCYVRNVNFEKAQSFFDRMPFKDAASWNTMITGYARRGEMEKAREL 177

Query: 158 FEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESL 217
           F  M E+N V+W +MISGY   G++E+    F+  P + VV+WTAMI G+      + + 
Sbjct: 178 FYSMMEKNEVSWNAMISGYIECGDLEKASHFFKVAPVRGVVAWTAMITGYMKAKKVELAE 237

Query: 218 LLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLF------------------- 258
            +F +M        N N+ + N+MI+GY+   R E+   LF                   
Sbjct: 238 AMFKDMTV------NKNLVTWNAMISGYVENSRPEDGLKLFRAMLEEGIRPNSSGLSSAL 291

Query: 259 --------------------DTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAV 298
                                +    D  + TS+I  Y   G++ +A+ LF  M  +D V
Sbjct: 292 LGCSELSALQLGRQIHQIVSKSTLCNDVTALTSLISMYCKCGELGDAWKLFEVMKKKDVV 351

Query: 299 AWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVL 358
           AW AMISG  Q+    +A  LF EM  + + P   TF  +  A      +++G      +
Sbjct: 352 AWNAMISGYAQHGNADKALCLFREMIDNKIRPDWITFVAVLLACNHAGLVNIGMAYFESM 411

Query: 359 M---KTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSR 396
           +   K E + D     C++ +  + G ++ A  +  +M  R
Sbjct: 412 VRDYKVEPQPDHY--TCMVDLLGRAGKLEEALKLIRSMPFR 450



 Score =  168 bits (426), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 106/329 (32%), Positives = 168/329 (51%), Gaps = 18/329 (5%)

Query: 29  EAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGR 88
           EA  LF  +P+ +  SYN MLS +++N    +A+  F+ MP ++  SW  MI G A  G 
Sbjct: 111 EAHQLFDEIPEPDTFSYNIMLSCYVRNVNFEKAQSFFDRMPFKDAASWNTMITGYARRGE 170

Query: 89  VCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVEC 148
           + +AR+LF  M E+N VSWN+M+ G I  G+L +A   F   P++ V++W AMI GY++ 
Sbjct: 171 MEKARELFYSMMEKNEVSWNAMISGYIECGDLEKASHFFKVAPVRGVVAWTAMITGYMKA 230

Query: 149 CMMGEAIVLFEEME-ERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGF 207
             +  A  +F++M   +N+VTW +MISGY      E+G  LFR M  + +   ++ +   
Sbjct: 231 KKVELAEAMFKDMTVNKNLVTWNAMISGYVENSRPEDGLKLFRAMLEEGIRPNSSGLSSA 290

Query: 208 AWNGFHKESLLLFIEMKGICDNGNNCN-VQSCNSMINGYIRFGRLEEAQNLFDTVPVRDE 266
                   +L L  ++  I      CN V +  S+I+ Y + G L +A  LF+ +  +D 
Sbjct: 291 LLGCSELSALQLGRQIHQIVSKSTLCNDVTALTSLISMYCKCGELGDAWKLFEVMKKKDV 350

Query: 267 ISWTSMIDGYLSVGQVSNAYYLFHNMPDR----DAVAWTAMI-----SGLVQNELFVEAT 317
           ++W +MI GY   G    A  LF  M D     D + + A++     +GLV     +   
Sbjct: 351 VAWNAMISGYAQHGNADKALCLFREMIDNKIRPDWITFVAVLLACNHAGLVN----IGMA 406

Query: 318 YLFMEMRAHGVPPLNATFSV---LFGAAG 343
           Y    +R + V P    ++    L G AG
Sbjct: 407 YFESMVRDYKVEPQPDHYTCMVDLLGRAG 435


>gi|414873128|tpg|DAA51685.1| TPA: hypothetical protein ZEAMMB73_445170 [Zea mays]
          Length = 987

 Score =  341 bits (875), Expect = 6e-91,   Method: Compositional matrix adjust.
 Identities = 211/628 (33%), Positives = 333/628 (53%), Gaps = 61/628 (9%)

Query: 24  RGFIDEAKALFQLMP--QRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMIC 81
           RG   EA+ LF  +P  +RN  ++N++LS + ++GRL +A  +F EMP+R+ VSWT MI 
Sbjct: 261 RGCFREARCLFDDIPYARRNAFTWNSLLSLYAKSGRLPDAHVVFAEMPDRDAVSWTIMIV 320

Query: 82  GLADAGRVCEARKLFEEM------PER----NVVS------------------------- 106
           GL  +GR  +A K F +M      P +    NV+S                         
Sbjct: 321 GLNRSGRFWDAVKTFLDMVSEGFAPSQFTLTNVLSSCAAMEACGVGRKVHPFVVKLGLSS 380

Query: 107 ----WNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEME 162
                NS++    + G+   AR VF  M +++V SWN M++ Y     M  A+ +FE M 
Sbjct: 381 CVPVANSVLYMYGKCGDAETARAVFERMQVRSVSSWNVMVSLYTHQGRMELAVSMFENMV 440

Query: 163 ERNVVTWTSMISGYCRAGEVEEGYCLFRRM-----PRKNVVSWTAMIGGFAWNGFHKESL 217
           ER++V+W ++I+GY + G        F RM        +  + T+++   A    +   L
Sbjct: 441 ERSIVSWNTIIAGYNQNGLDGMALKFFSRMLSASSMEPDAFTVTSVLSACA----NLRML 496

Query: 218 LLFIEMKG-ICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRD--EISWTSMID 274
            +  +M   I   G  C+ Q  N++I+ Y + G +E A+ + D   V D   IS+T++++
Sbjct: 497 KMGKQMHSYILRTGMPCSSQIMNALISTYAKSGSVETARRIMDQAVVADLNVISFTALLE 556

Query: 275 GYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNAT 334
           GY+ +G    A  +F  M +RD +AWTAMI G  QN    EA  LF  M   G  P + T
Sbjct: 557 GYVKLGDTKQAREIFDIMNNRDVIAWTAMIVGYHQNGQNDEAMELFRSMILIGPEPNSHT 616

Query: 335 FSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMV 394
            + +  A  + A +D G+QIHC  +++  E  + + N +I++YA+ G +  A  +F  + 
Sbjct: 617 LAAVLSACASLAYLDYGKQIHCKAIRSLQEQSVSVSNAIITVYARSGSVPLARRVFDQIC 676

Query: 395 SR-DLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGW 453
            R + ++W SM++  + HGL  + + +FE M+  G  P+ +T++G+LSAC+HAG V +G 
Sbjct: 677 WRKETITWTSMIVAMAQHGLGEQAVVLFEEMVRVGVKPDHITYVGVLSACAHAGFVDKGK 736

Query: 454 ELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGF 513
             +  M + + I P   HY  M++L  RAG + EA EF+ R+P  PD  +WG+LL AC  
Sbjct: 737 RYYEQMQNEHGIVPQMSHYACMVDLHARAGLLTEAHEFIQRMPVAPDTVVWGSLLAACRV 796

Query: 514 CEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEH---KLRMDMGLKGVRKV 570
              NA++AE AA +LL +DP N+ A+  L N+Y+A GR  +     KLR D   KGV+K 
Sbjct: 797 -RKNADLAELAAGKLLSIDPHNSGAYSALANVYSACGRWNDAARIWKLRKD---KGVKKE 852

Query: 571 PGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
            G SW    G + +F + D +  Q   I
Sbjct: 853 TGFSWTHVRGKVHVFGADDVLHPQRDSI 880



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 113/459 (24%), Positives = 216/459 (47%), Gaps = 31/459 (6%)

Query: 21  YSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMI 80
           Y K G  + A+A+F+ M  R+V S+N M+S +   GR+  A  +FE M ER++VSW  +I
Sbjct: 392 YGKCGDAETARAVFERMQVRSVSSWNVMVSLYTHQGRMELAVSMFENMVERSIVSWNTII 451

Query: 81  CGLADAGRVCEARKLFEEMPERNVVSWNSMVVG----------LIRNGELNEARKVFNSM 130
            G    G    A K F  M   + +  ++  V           +++ G+   +  +   M
Sbjct: 452 AGYNQNGLDGMALKFFSRMLSASSMEPDAFTVTSVLSACANLRMLKMGKQMHSYILRTGM 511

Query: 131 PIKNVISWNAMIAGYVECCMMGEAIVLFEE--MEERNVVTWTSMISGYCRAGEVEEGYCL 188
           P  + I  NA+I+ Y +   +  A  + ++  + + NV+++T+++ GY + G+ ++   +
Sbjct: 512 PCSSQI-MNALISTYAKSGSVETARRIMDQAVVADLNVISFTALLEGYVKLGDTKQAREI 570

Query: 189 FRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCN----VQSCNSMING 244
           F  M  ++V++WTAMI G+  NG + E++ LF  M  I    N+      + +C S+   
Sbjct: 571 FDIMNNRDVIAWTAMIVGYHQNGQNDEAMELFRSMILIGPEPNSHTLAAVLSACASL--A 628

Query: 245 YIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMP-DRDAVAWTAM 303
           Y+ +G+    + +         +S  ++I  Y   G V  A  +F  +   ++ + WT+M
Sbjct: 629 YLDYGKQIHCKAIRSLQEQSVSVS-NAIITVYARSGSVPLARRVFDQICWRKETITWTSM 687

Query: 304 ISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTES 363
           I  + Q+ L  +A  LF EM   GV P + T+  +  A      +D G++ +    + ++
Sbjct: 688 IVAMAQHGLGEQAVVLFEEMVRVGVKPDHITYVGVLSACAHAGFVDKGKRYY---EQMQN 744

Query: 364 ESDLILE----NCLISMYAKCGVIDNAYNIFSNM-VSRDLVSWNSMVMGFSHHGLANETL 418
           E  ++ +     C++ ++A+ G++  A+     M V+ D V W S++        A+   
Sbjct: 745 EHGIVPQMSHYACMVDLHARAGLLTEAHEFIQRMPVAPDTVVWGSLLAACRVRKNADLAE 804

Query: 419 KVFESMLESGTHPNSV--TFLGILSACSHAGLVSRGWEL 455
                +L    H +        + SAC      +R W+L
Sbjct: 805 LAAGKLLSIDPHNSGAYSALANVYSACGRWNDAARIWKL 843



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 80/280 (28%), Positives = 141/280 (50%), Gaps = 13/280 (4%)

Query: 238 CNSMINGY----IRFGRLEEAQNLFDTVPV--RDEISWTSMIDGYLSVGQVSNAYYLFHN 291
           CN+++  Y    +  G   EA+ LFD +P   R+  +W S++  Y   G++ +A+ +F  
Sbjct: 247 CNNLLAYYASVGVSRGCFREARCLFDDIPYARRNAFTWNSLLSLYAKSGRLPDAHVVFAE 306

Query: 292 MPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLG 351
           MPDRDAV+WT MI GL ++  F +A   F++M + G  P   T + +  +  A     +G
Sbjct: 307 MPDRDAVSWTIMIVGLNRSGRFWDAVKTFLDMVSEGFAPSQFTLTNVLSSCAAMEACGVG 366

Query: 352 RQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHH 411
           R++H  ++K    S + + N ++ MY KCG  + A  +F  M  R + SWN MV  ++H 
Sbjct: 367 RKVHPFVVKLGLSSCVPVANSVLYMYGKCGDAETARAVFERMQVRSVSSWNVMVSLYTHQ 426

Query: 412 GLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEH 471
           G     + +FE+M+E       V++  I++  +  GL     + F+ M     ++P    
Sbjct: 427 GRMELAVSMFENMVERSI----VSWNTIIAGYNQNGLDGMALKFFSRMLSASSMEPDAFT 482

Query: 472 YVSMINLLG--RAGKI-KEAEEFVLRLPFEPDHRIWGALL 508
             S+++     R  K+ K+   ++LR       +I  AL+
Sbjct: 483 VTSVLSACANLRMLKMGKQMHSYILRTGMPCSSQIMNALI 522


>gi|449435276|ref|XP_004135421.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Cucumis sativus]
 gi|449493520|ref|XP_004159329.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Cucumis sativus]
          Length = 743

 Score =  340 bits (871), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 188/585 (32%), Positives = 324/585 (55%), Gaps = 15/585 (2%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWT 77
           I  Y K G +  A+ +F  +PQ N+ S+N +LS + + G L + +R+F+ MP  +VVSW 
Sbjct: 47  INTYGKLGDLKNARNVFDHIPQPNLFSWNTLLSAYSKLGYLQDMQRVFDSMPNHDVVSWN 106

Query: 78  AMICGLADAGRVCEARKLFEEMPER-----NVVSWNSMVVGLIRNGELNEARKVFNSMPI 132
           +++ G A  G + E+ +++  M +      N +++++M++     G ++  R++   +  
Sbjct: 107 SLLSGYAGNGLISESVRVYNMMLKDGSVNLNRITFSTMLILSSNRGFVDLGRQIHGQIFK 166

Query: 133 KNVISW----NAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCL 188
               S+    + ++  Y +   + +A  +FEE+ E+N+V + +MI+G  R   + E   L
Sbjct: 167 FGYQSYLFVGSPLVDMYAKTGFINDANRIFEEIPEKNIVVYNTMITGLLRCRFIVEAEQL 226

Query: 189 FRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEM--KGICDNGNNCNVQSCNSMINGYI 246
           F  MP K+ +SWT +I G   NG  KE++  F EM  +G C   +     S  +   G++
Sbjct: 227 FDNMPEKDSISWTTIITGLTQNGLFKEAVDKFKEMGIEGFC--MDQFTFGSVLTACGGFL 284

Query: 247 RFGRLEEAQNLFDTVPVRDEI-SWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMIS 305
                ++          +D I   ++++D Y     V  A  +F  M  ++ ++WTAM+ 
Sbjct: 285 ALDEGKQIHAYIIRTDYQDNIFVGSALLDMYCKCRNVKYAEAVFRKMRHKNVISWTAMLV 344

Query: 306 GLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESES 365
           G  QN    EA  +F +M+ + + P + T   +  +    A+++ G Q H   + +    
Sbjct: 345 GYGQNGYSEEAVRIFCDMQRNEIHPDDFTLGSVISSCANLASLEEGAQFHGQALASGLIC 404

Query: 366 DLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESML 425
            + + N LI++Y KCG +++A+ +F  M  RD VSW ++V G++  G ANET+ +FE+ML
Sbjct: 405 FVTVSNALITLYGKCGSLEHAHQLFHEMKIRDEVSWTALVSGYAQFGKANETISLFETML 464

Query: 426 ESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKI 485
             G  P+ VTF+G+LSACS AGLV +G+  F  M   ++I P P+HY  MI+LL RAG++
Sbjct: 465 AHGIVPDGVTFVGVLSACSRAGLVEKGYHYFECMVKEHRITPIPDHYTCMIDLLSRAGRL 524

Query: 486 KEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNI 545
           +EA+ F+ ++PF PD   W  LL +C    GN EI + AA+ L +L+P N  ++++L +I
Sbjct: 525 EEAKNFINQMPFSPDAIGWATLLSSCRL-NGNLEIGKWAAESLHKLEPQNPASYILLSSI 583

Query: 546 YAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDK 590
           YAA G+  +  KLR  M   GV+K PG SW+     + +F + D+
Sbjct: 584 YAAKGKWDDVAKLRKGMREMGVKKEPGHSWIKYKNKVHIFSADDR 628



 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 108/435 (24%), Positives = 210/435 (48%), Gaps = 44/435 (10%)

Query: 125 KVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEE 184
           ++  ++       +N +I  Y +   +  A  +F+ + + N+ +W +++S Y + G +++
Sbjct: 30  RIIRTLTNPETFLYNNLINTYGKLGDLKNARNVFDHIPQPNLFSWNTLLSAYSKLGYLQD 89

Query: 185 GYCLFRRMPRKNVVSWTAMIGGFAWNGFHKES----------------------LLLFIE 222
              +F  MP  +VVSW +++ G+A NG   ES                      +L+   
Sbjct: 90  MQRVFDSMPNHDVVSWNSLLSGYAGNGLISESVRVYNMMLKDGSVNLNRITFSTMLILSS 149

Query: 223 MKGICDNGNNCNVQ-----------SCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTS 271
            +G  D G   + Q             + +++ Y + G + +A  +F+ +P ++ + + +
Sbjct: 150 NRGFVDLGRQIHGQIFKFGYQSYLFVGSPLVDMYAKTGFINDANRIFEEIPEKNIVVYNT 209

Query: 272 MIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPL 331
           MI G L    +  A  LF NMP++D+++WT +I+GL QN LF EA   F EM   G    
Sbjct: 210 MITGLLRCRFIVEAEQLFDNMPEKDSISWTTIITGLTQNGLFKEAVDKFKEMGIEGFCMD 269

Query: 332 NATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFS 391
             TF  +  A G    +D G+QIH  +++T+ + ++ + + L+ MY KC  +  A  +F 
Sbjct: 270 QFTFGSVLTACGGFLALDEGKQIHAYIIRTDYQDNIFVGSALLDMYCKCRNVKYAEAVFR 329

Query: 392 NMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSR 451
            M  ++++SW +M++G+  +G + E +++F  M  +  HP+  T   ++S+C++   +  
Sbjct: 330 KMRHKNVISWTAMLVGYGQNGYSEEAVRIFCDMQRNEIHPDDFTLGSVISSCANLASLEE 389

Query: 452 GWELFNAMFDVYKIQPGPEHYVS----MINLLGRAGKIKEAEEFVLRLPFEPDHRIWGAL 507
           G     A F    +  G   +V+    +I L G+ G ++ A +    +    D   W AL
Sbjct: 390 G-----AQFHGQALASGLICFVTVSNALITLYGKCGSLEHAHQLFHEMKIR-DEVSWTAL 443

Query: 508 L-GACGFCEGNAEIA 521
           + G   F + N  I+
Sbjct: 444 VSGYAQFGKANETIS 458



 Score = 95.5 bits (236), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 89/363 (24%), Positives = 153/363 (42%), Gaps = 78/363 (21%)

Query: 7   PKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFE 66
           P+  +V   + IT   +  FI EA+ LF  MP+++ +S+  +++G  QNG   EA   F+
Sbjct: 200 PEKNIVVYNTMITGLLRCRFIVEAEQLFDNMPEKDSISWTTIITGLTQNGLFKEAVDKFK 259

Query: 67  EMP---------------------------------------ERNVVSWTAMICGLADAG 87
           EM                                        + N+   +A++       
Sbjct: 260 EMGIEGFCMDQFTFGSVLTACGGFLALDEGKQIHAYIIRTDYQDNIFVGSALLDMYCKCR 319

Query: 88  RVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSM----------PIKNVIS 137
            V  A  +F +M  +NV+SW +M+VG  +NG   EA ++F  M           + +VIS
Sbjct: 320 NVKYAEAVFRKMRHKNVISWTAMLVGYGQNGYSEEAVRIFCDMQRNEIHPDDFTLGSVIS 379

Query: 138 WNAMIAGYVECCM-----MGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRM 192
             A +A   E        +   ++ F       V    ++I+ Y + G +E  + LF  M
Sbjct: 380 SCANLASLEEGAQFHGQALASGLICF-------VTVSNALITLYGKCGSLEHAHQLFHEM 432

Query: 193 PRKNVVSWTAMIGGFAWNGFHKESLLLFIEM--KGICDNGNNCNVQSCNSMINGYIRFGR 250
             ++ VSWTA++ G+A  G   E++ LF  M   GI  +G      +   +++   R G 
Sbjct: 433 KIRDEVSWTALVSGYAQFGKANETISLFETMLAHGIVPDG-----VTFVGVLSACSRAGL 487

Query: 251 LEEAQNLFD-------TVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMP-DRDAVAWTA 302
           +E+  + F+         P+ D   +T MID     G++  A    + MP   DA+ W  
Sbjct: 488 VEKGYHYFECMVKEHRITPIPDH--YTCMIDLLSRAGRLEEAKNFINQMPFSPDAIGWAT 545

Query: 303 MIS 305
           ++S
Sbjct: 546 LLS 548



 Score = 62.8 bits (151), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 34/111 (30%), Positives = 62/111 (55%), Gaps = 8/111 (7%)

Query: 352 RQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHH 411
           +++HC +++T +  +  L N LI+ Y K G + NA N+F ++   +L SWN+++  +S  
Sbjct: 25  KKLHCRIIRTLTNPETFLYNNLINTYGKLGDLKNARNVFDHIPQPNLFSWNTLLSAYSKL 84

Query: 412 GLANETLKVFESMLESGTHPNS--VTFLGILSACSHAGLVSRGWELFNAMF 460
           G   +  +VF+SM      PN   V++  +LS  +  GL+S    ++N M 
Sbjct: 85  GYLQDMQRVFDSM------PNHDVVSWNSLLSGYAGNGLISESVRVYNMML 129


>gi|242062548|ref|XP_002452563.1| hypothetical protein SORBIDRAFT_04g028180 [Sorghum bicolor]
 gi|241932394|gb|EES05539.1| hypothetical protein SORBIDRAFT_04g028180 [Sorghum bicolor]
          Length = 745

 Score =  340 bits (871), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 195/602 (32%), Positives = 320/602 (53%), Gaps = 29/602 (4%)

Query: 7   PKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFE 66
           P  L+ HL   +T Y K G    A+ +F  MP  N+ +YNA+LS       LS+   LF 
Sbjct: 40  PTYLLNHL---LTAYGKAGRHARARRVFDAMPHPNLFTYNALLSTLAHARLLSDMEALFA 96

Query: 67  EMPERNVVSWTAMICGLADAGRVCEARKLFEEM--------PERNVVSWNSMVVGLIRNG 118
            M +R++VS+ A+I G +  G   +A +++  +        P R  +S   M    + + 
Sbjct: 97  SMTQRDIVSYNAVIAGFSGGGSHAQAVRVYLALLQADSSVRPSRITMSTMVMAASALGDR 156

Query: 119 ELNEARKVFNSMPIKNVISWNAMIAG-----YVECCMMGEAIVLFEEMEERNVVTWTSMI 173
            L    K F+   ++     NA +       Y +  ++G+A   F+E++ +NVV + +MI
Sbjct: 157 ALG---KQFHCQILRLGFGANAFVGSPLVDMYAKMSLVGDAKRAFDEVDSKNVVMYNTMI 213

Query: 174 SGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNC 233
           +G  R   VEE   LF  M  ++ ++WT M+ GF  NG   E+L +F  M+     G   
Sbjct: 214 TGLLRCKMVEEARRLFEVMTDRDSITWTTMVTGFTQNGLESEALEIFRRMRF---QGIAI 270

Query: 234 NVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEIS-----WTSMIDGYLSVGQVSNAYYL 288
           +  +  S++        LE+ + +   + +R          ++++D Y     +  A  +
Sbjct: 271 DQYTFGSILTACGALSALEQGKQIHAYI-IRTRYDDNVFVGSALVDMYSKCRSIKLAETV 329

Query: 289 FHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANI 348
           F  M  ++ ++WTA+I G  QN    EA  +F EM+  G+ P + T   +  +    A++
Sbjct: 330 FRRMTCKNIISWTALIVGYGQNGCSEEAVRVFSEMQRDGIDPDDYTLGSVISSCANLASL 389

Query: 349 DLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGF 408
           + G Q HC+ + +     + + N L+++Y KCG I++A+ +F  M   D VSW ++V G+
Sbjct: 390 EEGAQFHCLALVSGLMHYITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVSGY 449

Query: 409 SHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPG 468
           +  G A ET+ +FE ML  G  P+ VTF+G+LSACS AG V +G   F++M   + I P 
Sbjct: 450 AQFGRAKETIDLFEKMLAKGVKPDGVTFIGVLSACSRAGFVEKGRSYFHSMQKDHGIVPI 509

Query: 469 PEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRL 528
            +HY  MI+L  R+GK+KEAEEF+ ++P  PD   WG LL AC    G+ EI + AA+ L
Sbjct: 510 DDHYTCMIDLYSRSGKLKEAEEFIKQMPMHPDAIGWGTLLSACRL-RGDMEIGKWAAENL 568

Query: 529 LELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSG 588
           LE+DP N  ++V+LC+++AA G+  E  +LR  M  + V+K PGCSW+     + +F + 
Sbjct: 569 LEIDPQNPASYVLLCSMHAAKGQWNEVAQLRRGMRDRQVKKEPGCSWIKYKNKVHIFSAD 628

Query: 589 DK 590
           D+
Sbjct: 629 DQ 630


>gi|225458036|ref|XP_002280360.1| PREDICTED: pentatricopeptide repeat-containing protein At1g25360
           [Vitis vinifera]
          Length = 799

 Score =  339 bits (870), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 211/640 (32%), Positives = 325/640 (50%), Gaps = 88/640 (13%)

Query: 46  NAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPE--RN 103
           N ++  + ++  L  A  LF+E+ + ++V+ T +I   + AG    AR++F   P   R+
Sbjct: 54  NRLIDVYCKSSDLVSAHHLFDEIRQPDIVARTTLIAAHSSAGNSNLAREIFFATPLGIRD 113

Query: 104 VVSWNSMVVG----------------LIRNG----------------ELNEARKVFNSMP 131
            V +N+M+ G                L+RNG                 + E  K    + 
Sbjct: 114 TVCYNAMITGYSHNNDGFGAIELFRDLLRNGFRPDNFTFTSVLGALALIVEDEKQCQQIH 173

Query: 132 IKNVIS--------WNAMIAGYVECCM---------MGEAIVLFEEMEERNVVTWTSMIS 174
              V S         NA+++ +V+C           M  A  LF+EM ER+ ++WT+MI+
Sbjct: 174 CAVVKSGSGFVTSVLNALLSVFVKCASSPLVSSSSLMAAARKLFDEMTERDELSWTTMIA 233

Query: 175 GYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMK--GI------ 226
           GY R GE++        M  K VV+W AMI G+  +GF  E+L +F +M   GI      
Sbjct: 234 GYVRNGELDAARQFLDGMTEKLVVAWNAMISGYVHHGFFLEALEMFRKMYLLGIQWDEFT 293

Query: 227 -------CDNGN---------------------NCNVQSCNSMINGYIRFGRLEEAQNLF 258
                  C N                       + ++   N++   Y + G+++EA+ +F
Sbjct: 294 YTSVLSACANAGFFLHGKQVHAYILRTEPRPSLDFSLSVNNALATLYWKCGKVDEARQVF 353

Query: 259 DTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATY 318
           + +PV+D +SW +++ GY++ G++  A   F  MP+R+ + WT MISGL QN    E+  
Sbjct: 354 NQMPVKDLVSWNAILSGYVNAGRIDEAKSFFEEMPERNLLTWTVMISGLAQNGFGEESLK 413

Query: 319 LFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYA 378
           LF  M++ G  P +  F+    A    A +  GRQ+H  L++   +S L   N LI+MYA
Sbjct: 414 LFNRMKSEGFEPCDYAFAGAIIACAWLAALMHGRQLHAQLVRLGFDSSLSAGNALITMYA 473

Query: 379 KCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLG 438
           KCGV++ A+ +F  M   D VSWN+M+     HG   + L++FE ML+    P+ +TFL 
Sbjct: 474 KCGVVEAAHCLFLTMPYLDSVSWNAMIAALGQHGHGAQALELFELMLKEDILPDRITFLT 533

Query: 439 ILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFE 498
           +LS CSHAGLV  G   F +M  +Y I PG +HY  MI+LL RAGK  EA++ +  +P E
Sbjct: 534 VLSTCSHAGLVEEGHRYFKSMSGLYGICPGEDHYARMIDLLCRAGKFSEAKDMIETMPVE 593

Query: 499 PDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKL 558
           P   IW ALL  C    GN ++   AA+RL EL P +   +V+L N+YA  GR  +  K+
Sbjct: 594 PGPPIWEALLAGCRI-HGNMDLGIQAAERLFELMPQHDGTYVLLSNMYATVGRWDDVAKV 652

Query: 559 RMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
           R  M  KGV+K PGCSW+     + +FL  D +  +V  +
Sbjct: 653 RKLMRDKGVKKEPGCSWIEVENKVHVFLVDDIVHPEVQAV 692



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 97/356 (27%), Positives = 159/356 (44%), Gaps = 60/356 (16%)

Query: 8   KSLVVHLTSSITKYSKRGFIDEAKALFQLMP----QRNVVSYNAMLS-----GFL----- 53
           + LVV   + I+ Y   GF  EA  +F+ M     Q +  +Y ++LS     GF      
Sbjct: 253 EKLVVAWNAMISGYVHHGFFLEALEMFRKMYLLGIQWDEFTYTSVLSACANAGFFLHGKQ 312

Query: 54  -----------------------------QNGRLSEARRLFEEMPERNVVSWTAMICGLA 84
                                        + G++ EAR++F +MP +++VSW A++ G  
Sbjct: 313 VHAYILRTEPRPSLDFSLSVNNALATLYWKCGKVDEARQVFNQMPVKDLVSWNAILSGYV 372

Query: 85  DAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAG 144
           +AGR+ EA+  FEEMPERN+++W  M+ GL +NG   E+ K+FN M  +     +   AG
Sbjct: 373 NAGRIDEAKSFFEEMPERNLLTWTVMISGLAQNGFGEESLKLFNRMKSEGFEPCDYAFAG 432

Query: 145 YVECCMMGEAIVLFEEME--------ERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKN 196
            +  C    A++   ++         + ++    ++I+ Y + G VE  +CLF  MP  +
Sbjct: 433 AIIACAWLAALMHGRQLHAQLVRLGFDSSLSAGNALITMYAKCGVVEAAHCLFLTMPYLD 492

Query: 197 VVSWTAMIGGFAWNGFHKESLLLF---IEMKGICDNGNNCNVQSCNSMINGYIRFGR--L 251
            VSW AMI     +G   ++L LF   ++   + D      V S  S   G +  G    
Sbjct: 493 SVSWNAMIAALGQHGHGAQALELFELMLKEDILPDRITFLTVLSTCSHA-GLVEEGHRYF 551

Query: 252 EEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMP-DRDAVAWTAMISG 306
           +    L+   P  D   +  MID     G+ S A  +   MP +     W A+++G
Sbjct: 552 KSMSGLYGICPGEDH--YARMIDLLCRAGKFSEAKDMIETMPVEPGPPIWEALLAG 605



 Score = 91.7 bits (226), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 78/310 (25%), Positives = 139/310 (44%), Gaps = 52/310 (16%)

Query: 7   PKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFE 66
           P   +V   + ++ Y   G IDEAK+ F+ MP+RN++++  M+SG  QNG   E+ +LF 
Sbjct: 357 PVKDLVSWNAILSGYVNAGRIDEAKSFFEEMPERNLLTWTVMISGLAQNGFGEESLKLFN 416

Query: 67  EMPERNV----VSWTAMICGLADAGRVCEARKLFEEMP----ERNVVSWNSMVVGLIRNG 118
            M          ++   I   A    +   R+L  ++     + ++ + N+++    + G
Sbjct: 417 RMKSEGFEPCDYAFAGAIIACAWLAALMHGRQLHAQLVRLGFDSSLSAGNALITMYAKCG 476

Query: 119 ELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNV----VTWTSMIS 174
            +  A  +F +MP  + +SWNAMIA   +     +A+ LFE M + ++    +T+ +++S
Sbjct: 477 VVEAAHCLFLTMPYLDSVSWNAMIAALGQHGHGAQALELFELMLKEDILPDRITFLTVLS 536

Query: 175 GYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCN 234
               AG VEEG+  F+ M                              + GIC   ++  
Sbjct: 537 TCSHAGLVEEGHRYFKSMS----------------------------GLYGICPGEDH-- 566

Query: 235 VQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEIS-WTSM-----IDGYLSVGQVSNAYYL 288
                 MI+   R G+  EA+++ +T+PV      W ++     I G + +G +  A  L
Sbjct: 567 ---YARMIDLLCRAGKFSEAKDMIETMPVEPGPPIWEALLAGCRIHGNMDLG-IQAAERL 622

Query: 289 FHNMPDRDAV 298
           F  MP  D  
Sbjct: 623 FELMPQHDGT 632


>gi|302761102|ref|XP_002963973.1| hypothetical protein SELMODRAFT_81279 [Selaginella moellendorffii]
 gi|300167702|gb|EFJ34306.1| hypothetical protein SELMODRAFT_81279 [Selaginella moellendorffii]
          Length = 640

 Score =  339 bits (870), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 183/552 (33%), Positives = 294/552 (53%), Gaps = 24/552 (4%)

Query: 16  SSITKYSKRGFIDEAKALFQLMPQRN---VVSYNAMLSGFLQNGRLSEARRLFEEMPERN 72
           S +  Y+  G +DEAK  F  MP +N    V+ N ++    Q G + EA+RLF++ P+R 
Sbjct: 82  SMLAAYAHNGHLDEAKRFFAAMPDKNRSDPVACNILIGVHSQCGEIGEAKRLFDQAPDRT 141

Query: 73  VVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPI 132
           VVS+  +I   A +G +  A+ +F  MPER++VSWNS++     +G + E +++F+  P 
Sbjct: 142 VVSYNTLIQAFARSGHLIYAKWMFHSMPERSIVSWNSIISACGEHGLVQETKEIFDRAPQ 201

Query: 133 KNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRM 192
           +NVISWNAMI  Y     +G+A  LF+ M ER+V++WT MI GY  +GE+E     F RM
Sbjct: 202 RNVISWNAMIQAYSSSGHLGDASALFQTMRERSVISWTVMIVGYAHSGELESASAAFDRM 261

Query: 193 PRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLE 252
           P + V +W A+I        H +S  L    + + D+    +  S N+M+      G ++
Sbjct: 262 PERGVAAWNAIISA------HGQSKNL-TAAERLFDSMPERSTVSWNAMLQLLADSGEID 314

Query: 253 EAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNEL 312
            A+ LF  VP RD ISW + +  +  +G V  A  LFH MP  ++++W  +       E 
Sbjct: 315 RAKELFARVPRRDVISWNTAVKLHAELGDVDGAMGLFHKMPQWNSISWNILFHACGSVE- 373

Query: 313 FVEATYLFMEMRAHGVPPLNATFSV------LFGAAGATANIDLGRQIHCVLMKTESESD 366
             E+ +L+  M  HG+       S       +        ++   R+       + +E+ 
Sbjct: 374 --ESKHLYDTMPVHGIESWTTMLSTSVSETTILTVLAHNGHLSAAREC----FHSMAETT 427

Query: 367 LILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLE 426
           ++ +  +++ YA+ G +  A  +F +M     VSWN+MV  ++ +G   E L++F SM+ 
Sbjct: 428 IVAQTAMLAAYAQNGHVKEAKELFDSMPRTSFVSWNAMVTAYAQNGHPREALELFHSMVL 487

Query: 427 SGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIK 486
            G  P+ +TF  IL A SH G+  RGW  F +M   Y ++P  +H+  M++  GRAG++ 
Sbjct: 488 HGERPDEMTFSSILLASSHNGMADRGWSYFASMVPDYCVRPVRDHFYCMVDAFGRAGRLA 547

Query: 487 EAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIY 546
           EA E   R+PFE D  +W +LLGAC     + E     A +L E DP ++ A+ +L  +Y
Sbjct: 548 EAMELAERMPFEADVVVWRSLLGACRTSR-DVETGAFVAHKLFEADPGDSVAYTILAGMY 606

Query: 547 AASGRHVEEHKL 558
           A +G   EE K+
Sbjct: 607 ATAGMKDEEAKV 618



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 66/303 (21%), Positives = 122/303 (40%), Gaps = 51/303 (16%)

Query: 228 DNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYL---------- 277
           D     +V   NS++  Y R G  E+++ +FD    ++  SW SM+  Y           
Sbjct: 39  DRAATDDVFLANSLVQSYGRCGSAEDSRWVFDATRAKNAHSWVSMLAAYAHNGHLDEAKR 98

Query: 278 ------------------------SVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELF 313
                                     G++  A  LF   PDR  V++  +I    ++   
Sbjct: 99  FFAAMPDKNRSDPVACNILIGVHSQCGEIGEAKRLFDQAPDRTVVSYNTLIQAFARSGHL 158

Query: 314 VEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCL 373
           + A ++F  M    +   N+  S    A G    +   ++I         + ++I  N +
Sbjct: 159 IYAKWMFHSMPERSIVSWNSIIS----ACGEHGLVQETKEI----FDRAPQRNVISWNAM 210

Query: 374 ISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNS 433
           I  Y+  G + +A  +F  M  R ++SW  M++G++H G        F+ M E G     
Sbjct: 211 IQAYSSSGHLGDASALFQTMRERSVISWTVMIVGYAHSGELESASAAFDRMPERGV---- 266

Query: 434 VTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVL 493
             +  I+SA   +  ++    LF++M +   +      + +M+ LL  +G+I  A+E   
Sbjct: 267 AAWNAIISAHGQSKNLTAAERLFDSMPERSTVS-----WNAMLQLLADSGEIDRAKELFA 321

Query: 494 RLP 496
           R+P
Sbjct: 322 RVP 324


>gi|328774755|gb|AEB39777.1| pentatricopeptide repeat protein 91 [Funaria hygrometrica]
          Length = 890

 Score =  338 bits (868), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 185/568 (32%), Positives = 324/568 (57%), Gaps = 21/568 (3%)

Query: 39  QRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEE 98
           + +V    A+++ + + G +S A  +F++M ERNVVSWTA+I   A   ++ EA +L+E+
Sbjct: 211 ETDVAVATALITMYSKCGEISLACEIFQKMKERNVVSWTAIIQANAQHRKLNEAFELYEK 270

Query: 99  MPER----NVVSWNSMVVGLIRNGELNEARKVFNSMPIK----NVISWNAMIAGYVECCM 150
           M +     N V++ S++        LN  R++ + +  +    +V+  NA+I  Y +C  
Sbjct: 271 MLQAGISPNAVTFVSLLNSCNTPEALNRGRRIHSHISERGLETDVVVANALITMYCKCNC 330

Query: 151 MGEAIVLFEEMEERNVVTWTSMISGYCRAG-----EVEEGYCLFRRMPRK----NVVSWT 201
           + +A   F+ M +R+V++W++MI+GY ++G      ++E + L  RM R+    N V++ 
Sbjct: 331 IQDARETFDRMSKRDVISWSAMIAGYAQSGYQDKESLDEVFQLLERMRREGVFPNKVTFM 390

Query: 202 AMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTV 261
           +++   + +G  ++   +  E+  +   G   +     ++ N Y + G + EA+ +F  +
Sbjct: 391 SILKACSVHGALEQGRQIHAEISKV---GFESDRSLQTAIFNMYAKCGSIYEAEQVFSKM 447

Query: 262 PVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFM 321
             ++ ++W S++  Y+  G +++A  +F  M  R+ V+W  MI+G  Q+    +   L  
Sbjct: 448 ENKNVVAWASLLTMYIKCGDLTSAEKVFSEMSTRNVVSWNLMIAGYAQSGDIAKVFELLS 507

Query: 322 EMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCG 381
            M+  G  P   T   +  A GA + ++ G+ +H   +K   ESD ++   LI MY+KCG
Sbjct: 508 SMKVEGFQPDRVTIISILEACGALSALERGKLVHAEAVKLGLESDTVVATSLIGMYSKCG 567

Query: 382 VIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILS 441
            +  A  +F  + +RD V+WN+M+ G+  HG+  E + +F+ ML+    PN +TF  ++S
Sbjct: 568 EVTEARTVFDKISNRDTVAWNAMLAGYGQHGIGPEAVDLFKRMLKERVPPNEITFTAVIS 627

Query: 442 ACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDH 501
           AC  AGLV  G E+F  M + ++++PG +HY  M++LLGRAG+++EAEEF+ R+P EPD 
Sbjct: 628 ACGRAGLVQEGREIFRIMQEDFRMKPGKQHYGCMVDLLGRAGRLQEAEEFIQRMPCEPDI 687

Query: 502 RIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMD 561
            +W ALLGAC     N ++AE AA  +L L+P NA  +V L NIYA +GR  +  K+R  
Sbjct: 688 SVWHALLGACK-SHDNVQLAEWAAHHILRLEPSNASVYVTLSNIYAQAGRWDDSTKVRKV 746

Query: 562 MGLKGVRKVPGCSWLMRNGGIQMFLSGD 589
           M  KG++K  G S +  +G I  F++ D
Sbjct: 747 MDDKGLKKDRGESSIEIDGRIHTFVAED 774



 Score =  166 bits (420), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 119/438 (27%), Positives = 205/438 (46%), Gaps = 14/438 (3%)

Query: 171 SMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNG 230
           S+I+ Y + G+V     +FRRM  ++VV+W++MI  +A N    ++   F  MK      
Sbjct: 118 SLINFYSKFGDVASVEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMKDANIEP 177

Query: 231 NNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEIS-WTSMIDGYLSVGQVSNAYYLF 289
           N     S     N Y    +  E   +     +  +++  T++I  Y   G++S A  +F
Sbjct: 178 NRITFLSILKACNNYSMLEKAREIHTVVKASGMETDVAVATALITMYSKCGEISLACEIF 237

Query: 290 HNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANID 349
             M +R+ V+WTA+I    Q+    EA  L+ +M   G+ P   TF  L  +      ++
Sbjct: 238 QKMKERNVVSWTAIIQANAQHRKLNEAFELYEKMLQAGISPNAVTFVSLLNSCNTPEALN 297

Query: 350 LGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFS 409
            GR+IH  + +   E+D+++ N LI+MY KC  I +A   F  M  RD++SW++M+ G++
Sbjct: 298 RGRRIHSHISERGLETDVVVANALITMYCKCNCIQDARETFDRMSKRDVISWSAMIAGYA 357

Query: 410 HHGLA-----NETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYK 464
             G       +E  ++ E M   G  PN VTF+ IL ACS  G + +G ++ +A      
Sbjct: 358 QSGYQDKESLDEVFQLLERMRREGVFPNKVTFMSILKACSVHGALEQGRQI-HAEISKVG 416

Query: 465 IQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHA 524
            +       ++ N+  + G I EAE+   ++    +   W +LL     C G+   AE  
Sbjct: 417 FESDRSLQTAIFNMYAKCGSIYEAEQVFSKME-NKNVVAWASLLTMYIKC-GDLTSAE-- 472

Query: 525 AKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVR--KVPGCSWLMRNGGI 582
            K   E+   N  +  ++   YA SG   +  +L   M ++G +  +V   S L   G +
Sbjct: 473 -KVFSEMSTRNVVSWNLMIAGYAQSGDIAKVFELLSSMKVEGFQPDRVTIISILEACGAL 531

Query: 583 QMFLSGDKIPAQVAEILL 600
                G  + A+  ++ L
Sbjct: 532 SALERGKLVHAEAVKLGL 549



 Score =  162 bits (410), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 145/591 (24%), Positives = 254/591 (42%), Gaps = 88/591 (14%)

Query: 46  NAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNV- 104
           N++++ + + G ++   ++F  M  R+VV+W++MI   A      +A   FE M + N+ 
Sbjct: 117 NSLINFYSKFGDVASVEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMKDANIE 176

Query: 105 ---VSWNSMVVGLIRNGELNEARKVFNSMPIK----NVISWNAMIAGYVECCMMGEAIVL 157
              +++ S++        L +AR++   +       +V    A+I  Y +C  +  A  +
Sbjct: 177 PNRITFLSILKACNNYSMLEKAREIHTVVKASGMETDVAVATALITMYSKCGEISLACEI 236

Query: 158 FEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRK----NVVSWTAMIGGFAWNGFH 213
           F++M+ERNVV+WT++I    +  ++ E + L+ +M +     N V++ +++         
Sbjct: 237 FQKMKERNVVSWTAIIQANAQHRKLNEAFELYEKMLQAGISPNAVTFVSLLNSCN----T 292

Query: 214 KESLLLFIEMKG-ICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSM 272
            E+L     +   I + G   +V   N++I  Y +   +++A+  FD +  RD ISW++M
Sbjct: 293 PEALNRGRRIHSHISERGLETDVVVANALITMYCKCNCIQDARETFDRMSKRDVISWSAM 352

Query: 273 IDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLN 332
           I GY                            SG    E   E   L   MR  GV P  
Sbjct: 353 IAGYAQ--------------------------SGYQDKESLDEVFQLLERMRREGVFPNK 386

Query: 333 ATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVI--------- 383
            TF  +  A      ++ GRQIH  + K   ESD  L+  + +MYAKCG I         
Sbjct: 387 VTFMSILKACSVHGALEQGRQIHAEISKVGFESDRSLQTAIFNMYAKCGSIYEAEQVFSK 446

Query: 384 ----------------------DNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVF 421
                                  +A  +FS M +R++VSWN M+ G++  G   +  ++ 
Sbjct: 447 MENKNVVAWASLLTMYIKCGDLTSAEKVFSEMSTRNVVSWNLMIAGYAQSGDIAKVFELL 506

Query: 422 ESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGR 481
            SM   G  P+ VT + IL AC     + RG +L +A      ++       S+I +  +
Sbjct: 507 SSMKVEGFQPDRVTIISILEACGALSALERG-KLVHAEAVKLGLESDTVVATSLIGMYSK 565

Query: 482 AGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVV 541
            G++ EA     ++    D   W A+L   G      E  +   + L E  P   P  + 
Sbjct: 566 CGEVTEARTVFDKIS-NRDTVAWNAMLAGYGQHGIGPEAVDLFKRMLKERVP---PNEIT 621

Query: 542 LCNIYAASGRH--VEEHK-----LRMDMGLKGVRKVPGC--SWLMRNGGIQ 583
              + +A GR   V+E +     ++ D  +K  ++  GC    L R G +Q
Sbjct: 622 FTAVISACGRAGLVQEGREIFRIMQEDFRMKPGKQHYGCMVDLLGRAGRLQ 672



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 106/442 (23%), Positives = 194/442 (43%), Gaps = 78/442 (17%)

Query: 1   MSERNHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNG---- 56
           +SER     +VV   + IT Y K   I +A+  F  M +R+V+S++AM++G+ Q+G    
Sbjct: 306 ISERGLETDVVV-ANALITMYCKCNCIQDARETFDRMSKRDVISWSAMIAGYAQSGYQDK 364

Query: 57  -RLSEARRLFEEMPER----NVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMV 111
             L E  +L E M       N V++ +++   +  G + + R++  E+ +    S  S+ 
Sbjct: 365 ESLDEVFQLLERMRREGVFPNKVTFMSILKACSVHGALEQGRQIHAEISKVGFESDRSLQ 424

Query: 112 VGLI----RNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVV 167
             +     + G + EA +VF+ M  KNV++W +++  Y++C  +  A  +F EM  RNVV
Sbjct: 425 TAIFNMYAKCGSIYEAEQVFSKMENKNVVAWASLLTMYIKCGDLTSAEKVFSEMSTRNVV 484

Query: 168 TWTSMISGYCRAGEVEEGYCLFRRMP-------RKNVVSWTAMIGGFAW----NGFHKES 216
           +W  MI+GY ++G++ + + L   M        R  ++S     G  +        H E+
Sbjct: 485 SWNLMIAGYAQSGDIAKVFELLSSMKVEGFQPDRVTIISILEACGALSALERGKLVHAEA 544

Query: 217 LLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGY 276
           + L +E   +             S+I  Y + G + EA+ +FD +  RD ++W +M+ GY
Sbjct: 545 VKLGLESDTVV----------ATSLIGMYSKCGEVTEARTVFDKISNRDTVAWNAMLAGY 594

Query: 277 LSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFS 336
                                           Q+ +  EA  LF  M    VPP   TF+
Sbjct: 595 -------------------------------GQHGIGPEAVDLFKRMLKERVPPNEITFT 623

Query: 337 VLFGAAGATANIDLGRQIHCVLMKTESESDLILE------NCLISMYAKCGVIDNAYNIF 390
            +  A G    +  GR+I  ++     + D  ++       C++ +  + G +  A    
Sbjct: 624 AVISACGRAGLVQEGREIFRIM-----QEDFRMKPGKQHYGCMVDLLGRAGRLQEAEEFI 678

Query: 391 SNM-VSRDLVSWNSMVMGFSHH 411
             M    D+  W++++     H
Sbjct: 679 QRMPCEPDISVWHALLGACKSH 700



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 76/257 (29%), Positives = 130/257 (50%), Gaps = 13/257 (5%)

Query: 205 GGFAWN----GFHKESLLLF--IEMKGICDNGNN--CNVQSCNSMINGYIRFGRLEEAQN 256
           GG  W     G  KE++ L   I+ +G+  N N   C ++ C  +     RF   +    
Sbjct: 47  GGEVWRLCKAGRLKEAIQLLGIIKQRGLLVNSNTYGCIIEHCAKLR----RFEDGKMVHK 102

Query: 257 LFDTVPVRDEISW-TSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVE 315
             D + +  +I    S+I+ Y   G V++   +F  M  RD V W++MI+    N    +
Sbjct: 103 QLDELGLAIDIYLGNSLINFYSKFGDVASVEQVFRRMTLRDVVTWSSMIAAYAGNNHPAK 162

Query: 316 ATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLIS 375
           A   F  M+   + P   TF  +  A    + ++  R+IH V+  +  E+D+ +   LI+
Sbjct: 163 AFDTFERMKDANIEPNRITFLSILKACNNYSMLEKAREIHTVVKASGMETDVAVATALIT 222

Query: 376 MYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVT 435
           MY+KCG I  A  IF  M  R++VSW +++   + H   NE  +++E ML++G  PN+VT
Sbjct: 223 MYSKCGEISLACEIFQKMKERNVVSWTAIIQANAQHRKLNEAFELYEKMLQAGISPNAVT 282

Query: 436 FLGILSACSHAGLVSRG 452
           F+ +L++C+    ++RG
Sbjct: 283 FVSLLNSCNTPEALNRG 299



 Score =  112 bits (280), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 84/292 (28%), Positives = 147/292 (50%), Gaps = 17/292 (5%)

Query: 15  TSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVV 74
           T+    Y+K G I EA+ +F  M  +NVV++ ++L+ +++ G L+ A ++F EM  RNVV
Sbjct: 425 TAIFNMYAKCGSIYEAEQVFSKMENKNVVAWASLLTMYIKCGDLTSAEKVFSEMSTRNVV 484

Query: 75  SWTAMICGLADAGRVCEARKLFEEM------PER-NVVSWNSMVVGL--IRNGELNEARK 125
           SW  MI G A +G + +  +L   M      P+R  ++S       L  +  G+L  A  
Sbjct: 485 SWNLMIAGYAQSGDIAKVFELLSSMKVEGFQPDRVTIISILEACGALSALERGKLVHAEA 544

Query: 126 VFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEG 185
           V   +    V++  ++I  Y +C  + EA  +F+++  R+ V W +M++GY + G   E 
Sbjct: 545 VKLGLESDTVVA-TSLIGMYSKCGEVTEARTVFDKISNRDTVAWNAMLAGYGQHGIGPEA 603

Query: 186 YCLFRRMPRKNV----VSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSM 241
             LF+RM ++ V    +++TA+I      G  +E   +F  M+   D       Q    M
Sbjct: 604 VDLFKRMLKERVPPNEITFTAVISACGRAGLVQEGREIFRIMQE--DFRMKPGKQHYGCM 661

Query: 242 INGYIRFGRLEEAQNLFDTVPVRDEIS-WTSMIDGYLSVGQVSNAYYLFHNM 292
           ++   R GRL+EA+     +P   +IS W +++    S   V  A +  H++
Sbjct: 662 VDLLGRAGRLQEAEEFIQRMPCEPDISVWHALLGACKSHDNVQLAEWAAHHI 713



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 64/207 (30%), Positives = 102/207 (49%), Gaps = 21/207 (10%)

Query: 8   KSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEE 67
           +S  V  TS I  YSK G + EA+ +F  +  R+ V++NAML+G+ Q+G   EA  LF+ 
Sbjct: 550 ESDTVVATSLIGMYSKCGEVTEARTVFDKISNRDTVAWNAMLAGYGQHGIGPEAVDLFKR 609

Query: 68  M-PER---NVVSWTAMICGLADAGRVCEARKLFEEMPERNVVS-----WNSMVVGLIRNG 118
           M  ER   N +++TA+I     AG V E R++F  M E   +      +  MV  L R G
Sbjct: 610 MLKERVPPNEITFTAVISACGRAGLVQEGREIFRIMQEDFRMKPGKQHYGCMVDLLGRAG 669

Query: 119 ELNEARKVFNSMPIKNVIS-WNAMIAGYVECCMMGEAIVLFE-------EMEERNVVTWT 170
            L EA +    MP +  IS W+A++      C   + + L E        +E  N   + 
Sbjct: 670 RLQEAEEFIQRMPCEPDISVWHALLGA----CKSHDNVQLAEWAAHHILRLEPSNASVYV 725

Query: 171 SMISGYCRAGEVEEGYCLFRRMPRKNV 197
           ++ + Y +AG  ++   + + M  K +
Sbjct: 726 TLSNIYAQAGRWDDSTKVRKVMDDKGL 752



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 46/196 (23%), Positives = 93/196 (47%), Gaps = 2/196 (1%)

Query: 315 EATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLI 374
           EA  L   ++  G+   + T+  +          + G+ +H  L +     D+ L N LI
Sbjct: 61  EAIQLLGIIKQRGLLVNSNTYGCIIEHCAKLRRFEDGKMVHKQLDELGLAIDIYLGNSLI 120

Query: 375 SMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSV 434
           + Y+K G + +   +F  M  RD+V+W+SM+  ++ +    +    FE M ++   PN +
Sbjct: 121 NFYSKFGDVASVEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMKDANIEPNRI 180

Query: 435 TFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLR 494
           TFL IL AC++  ++ +  E+ + +     ++       ++I +  + G+I  A E   +
Sbjct: 181 TFLSILKACNNYSMLEKAREI-HTVVKASGMETDVAVATALITMYSKCGEISLACEIFQK 239

Query: 495 LPFEPDHRIWGALLGA 510
           +  E +   W A++ A
Sbjct: 240 MK-ERNVVSWTAIIQA 254


>gi|15227144|ref|NP_179798.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206010|sp|Q9SHZ8.1|PP168_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g22070
 gi|4587589|gb|AAD25817.1| hypothetical protein [Arabidopsis thaliana]
 gi|330252165|gb|AEC07259.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 786

 Score =  338 bits (867), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 209/624 (33%), Positives = 336/624 (53%), Gaps = 45/624 (7%)

Query: 21  YSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMI 80
           YSK G+   A+ LF  MP R   S+N +LS + + G +      F+++P+R+ VSWT MI
Sbjct: 59  YSKTGYALHARKLFDEMPLRTAFSWNTVLSAYSKRGDMDSTCEFFDQLPQRDSVSWTTMI 118

Query: 81  CGLADAGRVCEARKLFEEMPER-------------------------------------- 102
            G  + G+  +A ++  +M +                                       
Sbjct: 119 VGYKNIGQYHKAIRVMGDMVKEGIEPTQFTLTNVLASVAATRCMETGKKVHSFIVKLGLR 178

Query: 103 -NVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEM 161
            NV   NS++    + G+   A+ VF+ M ++++ SWNAMIA +++   M  A+  FE+M
Sbjct: 179 GNVSVSNSLLNMYAKCGDPMMAKFVFDRMVVRDISSWNAMIALHMQVGQMDLAMAQFEQM 238

Query: 162 EERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNG-FHKESLLLF 220
            ER++VTW SMISG+ + G       +F +M R +++S          +   + E L + 
Sbjct: 239 AERDIVTWNSMISGFNQRGYDLRALDIFSKMLRDSLLSPDRFTLASVLSACANLEKLCIG 298

Query: 221 IEMKG-ICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRD-EIS-WTSMIDGYL 277
            ++   I   G + +    N++I+ Y R G +E A+ L +    +D +I  +T+++DGY+
Sbjct: 299 KQIHSHIVTTGFDISGIVLNALISMYSRCGGVETARRLIEQRGTKDLKIEGFTALLDGYI 358

Query: 278 SVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSV 337
            +G ++ A  +F ++ DRD VAWTAMI G  Q+  + EA  LF  M   G  P + T + 
Sbjct: 359 KLGDMNQAKNIFVSLKDRDVVAWTAMIVGYEQHGSYGEAINLFRSMVGGGQRPNSYTLAA 418

Query: 338 LFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNM-VSR 396
           +   A + A++  G+QIH   +K+     + + N LI+MYAK G I +A   F  +   R
Sbjct: 419 MLSVASSLASLSHGKQIHGSAVKSGEIYSVSVSNALITMYAKAGNITSASRAFDLIRCER 478

Query: 397 DLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELF 456
           D VSW SM++  + HG A E L++FE+ML  G  P+ +T++G+ SAC+HAGLV++G + F
Sbjct: 479 DTVSWTSMIIALAQHGHAEEALELFETMLMEGLRPDHITYVGVFSACTHAGLVNQGRQYF 538

Query: 457 NAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEG 516
           + M DV KI P   HY  M++L GRAG ++EA+EF+ ++P EPD   WG+LL AC     
Sbjct: 539 DMMKDVDKIIPTLSHYACMVDLFGRAGLLQEAQEFIEKMPIEPDVVTWGSLLSACR-VHK 597

Query: 517 NAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWL 576
           N ++ + AA+RLL L+P N+ A+  L N+Y+A G+  E  K+R  M    V+K  G SW+
Sbjct: 598 NIDLGKVAAERLLLLEPENSGAYSALANLYSACGKWEEAAKIRKSMKDGRVKKEQGFSWI 657

Query: 577 MRNGGIQMFLSGDKIPAQVAEILL 600
                + +F   D    +  EI +
Sbjct: 658 EVKHKVHVFGVEDGTHPEKNEIYM 681



 Score =  132 bits (332), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 106/410 (25%), Positives = 198/410 (48%), Gaps = 25/410 (6%)

Query: 16  SSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVS 75
           S +  Y+K G    AK +F  M  R++ S+NAM++  +Q G++  A   FE+M ER++V+
Sbjct: 186 SLLNMYAKCGDPMMAKFVFDRMVVRDISSWNAMIALHMQVGQMDLAMAQFEQMAERDIVT 245

Query: 76  WTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRN----------GELNEARK 125
           W +MI G    G    A  +F +M   +++S +   +  + +          G+   +  
Sbjct: 246 WNSMISGFNQRGYDLRALDIFSKMLRDSLLSPDRFTLASVLSACANLEKLCIGKQIHSHI 305

Query: 126 VFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEE--MEERNVVTWTSMISGYCRAGEVE 183
           V     I  ++  NA+I+ Y  C  +  A  L E+   ++  +  +T+++ GY + G++ 
Sbjct: 306 VTTGFDISGIV-LNALISMYSRCGGVETARRLIEQRGTKDLKIEGFTALLDGYIKLGDMN 364

Query: 184 EGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMIN 243
           +   +F  +  ++VV+WTAMI G+  +G + E++ LF  M G    G   N  +  +M++
Sbjct: 365 QAKNIFVSLKDRDVVAWTAMIVGYEQHGSYGEAINLFRSMVG---GGQRPNSYTLAAMLS 421

Query: 244 GYIRFGRLEEAQNLFDTVPVRDEISWTS----MIDGYLSVGQVSNAYYLFHNMP-DRDAV 298
                  L   + +  +     EI   S    +I  Y   G +++A   F  +  +RD V
Sbjct: 422 VASSLASLSHGKQIHGSAVKSGEIYSVSVSNALITMYAKAGNITSASRAFDLIRCERDTV 481

Query: 299 AWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVL 358
           +WT+MI  L Q+    EA  LF  M   G+ P + T+  +F A      ++ GRQ +  +
Sbjct: 482 SWTSMIIALAQHGHAEEALELFETMLMEGLRPDHITYVGVFSACTHAGLVNQGRQ-YFDM 540

Query: 359 MKTESESDLILEN--CLISMYAKCGVIDNAYNIFSNM-VSRDLVSWNSMV 405
           MK   +    L +  C++ ++ + G++  A      M +  D+V+W S++
Sbjct: 541 MKDVDKIIPTLSHYACMVDLFGRAGLLQEAQEFIEKMPIEPDVVTWGSLL 590



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 77/289 (26%), Positives = 131/289 (45%), Gaps = 47/289 (16%)

Query: 239 NSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAV 298
           N+++N Y + G    A+ LFD +P+R   SW +++  Y   G + +    F  +P RD+V
Sbjct: 53  NNLMNVYSKTGYALHARKLFDEMPLRTAFSWNTVLSAYSKRGDMDSTCEFFDQLPQRDSV 112

Query: 299 AWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVL 358
           +WT MI G      + +A  +  +M   G+ P   T + +  +  AT  ++ G+++H  +
Sbjct: 113 SWTTMIVGYKNIGQYHKAIRVMGDMVKEGIEPTQFTLTNVLASVAATRCMETGKKVHSFI 172

Query: 359 MKTESESDLILENCLISMYAKC-------------------------------GVIDNAY 387
           +K     ++ + N L++MYAKC                               G +D A 
Sbjct: 173 VKLGLRGNVSVSNSLLNMYAKCGDPMMAKFVFDRMVVRDISSWNAMIALHMQVGQMDLAM 232

Query: 388 NIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESML-ESGTHPNSVTFLGILSACS-- 444
             F  M  RD+V+WNSM+ GF+  G     L +F  ML +S   P+  T   +LSAC+  
Sbjct: 233 AQFEQMAERDIVTWNSMISGFNQRGYDLRALDIFSKMLRDSLLSPDRFTLASVLSACANL 292

Query: 445 ---------HAGLVSRGWEL----FNAMFDVYKIQPGPEHYVSMINLLG 480
                    H+ +V+ G+++     NA+  +Y    G E    +I   G
Sbjct: 293 EKLCIGKQIHSHIVTTGFDISGIVLNALISMYSRCGGVETARRLIEQRG 341



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 58/255 (22%), Positives = 113/255 (44%), Gaps = 51/255 (20%)

Query: 3   ERNHPKSLVVH-LTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEA 61
           E+   K L +   T+ +  Y K G +++AK +F  +  R+VV++ AM+ G+ Q+G   EA
Sbjct: 338 EQRGTKDLKIEGFTALLDGYIKLGDMNQAKNIFVSLKDRDVVAWTAMIVGYEQHGSYGEA 397

Query: 62  RRLFEEM------PER---------------------------------NVVSWTAMICG 82
             LF  M      P                                   +V    A+I  
Sbjct: 398 INLFRSMVGGGQRPNSYTLAAMLSVASSLASLSHGKQIHGSAVKSGEIYSVSVSNALITM 457

Query: 83  LADAGRVCEARKLFEEMP-ERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNV----IS 137
            A AG +  A + F+ +  ER+ VSW SM++ L ++G   EA ++F +M ++ +    I+
Sbjct: 458 YAKAGNITSASRAFDLIRCERDTVSWTSMIIALAQHGHAEEALELFETMLMEGLRPDHIT 517

Query: 138 WNAMIAGYVECCMMGEAIVLFEEMEERNVVT-----WTSMISGYCRAGEVEEGYCLFRRM 192
           +  + +      ++ +    F+ M++ + +      +  M+  + RAG ++E      +M
Sbjct: 518 YVGVFSACTHAGLVNQGRQYFDMMKDVDKIIPTLSHYACMVDLFGRAGLLQEAQEFIEKM 577

Query: 193 P-RKNVVSWTAMIGG 206
           P   +VV+W +++  
Sbjct: 578 PIEPDVVTWGSLLSA 592



 Score = 44.7 bits (104), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 39/185 (21%), Positives = 83/185 (44%), Gaps = 15/185 (8%)

Query: 354 IHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGL 413
           +HC ++K+     + L N L+++Y+K G   +A  +F  M  R   SWN+++  +S  G 
Sbjct: 36  VHCRVIKSGLMFSVYLMNNLMNVYSKTGYALHARKLFDEMPLRTAFSWNTVLSAYSKRGD 95

Query: 414 ANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYV 473
            + T + F+ + +     +SV++  ++    + G   +       M D+ K    P  + 
Sbjct: 96  MDSTCEFFDQLPQR----DSVSWTTMIVGYKNIGQYHKA---IRVMGDMVKEGIEPTQF- 147

Query: 474 SMINLLGRAGKI------KEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKR 527
           ++ N+L            K+   F+++L    +  +  +LL     C G+  +A+    R
Sbjct: 148 TLTNVLASVAATRCMETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKC-GDPMMAKFVFDR 206

Query: 528 LLELD 532
           ++  D
Sbjct: 207 MVVRD 211


>gi|222622013|gb|EEE56145.1| hypothetical protein OsJ_05030 [Oryza sativa Japonica Group]
          Length = 742

 Score =  338 bits (866), Expect = 7e-90,   Method: Compositional matrix adjust.
 Identities = 185/589 (31%), Positives = 313/589 (53%), Gaps = 48/589 (8%)

Query: 46  NAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVV 105
           N +L+ + ++GRL+ ARR+F+EMP+ N+ +  A++  LA +  V +  +LF  MPER+ V
Sbjct: 52  NHLLTAYAKSGRLARARRVFDEMPDPNLFTRNALLSALAHSRLVPDMERLFASMPERDAV 111

Query: 106 SWNSMVVGLIRNGELNEARKVFNSM-------PIKNVISWNAMIAG-------------- 144
           S+N+++ G    G    + +++ ++       P +  +S   M+A               
Sbjct: 112 SYNALITGFSSTGSPARSVQLYRALLREESVRPTRITLSAMIMVASALSDRALGHSVHCQ 171

Query: 145 -------------------YVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEG 185
                              Y +  ++ +A  +F+EME + VV + ++I+G  R   +E+ 
Sbjct: 172 VLRLGFGAYAFVGSPLVDMYAKMGLIRDARRVFQEMEAKTVVMYNTLITGLLRCKMIEDA 231

Query: 186 YCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGY 245
             LF+ M  ++ ++WT M+ G   NG   E+L +F  M+     G   +  +  S++   
Sbjct: 232 KGLFQLMVDRDSITWTTMVTGLTQNGLQLEALDVFRRMRA---EGVGIDQYTFGSILTAC 288

Query: 246 IRFGRLEEAQNLFDTVP---VRDEI-SWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWT 301
                LEE + +   +      D +   ++++D Y     +  A  +F  M  R+ ++WT
Sbjct: 289 GALAALEEGKQIHAYITRTWYEDNVFVGSALVDMYSKCRSIRLAEAVFRRMTCRNIISWT 348

Query: 302 AMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKT 361
           AMI G  QN    EA   F EM+  G+ P + T   +  +    A+++ G Q HC+ + +
Sbjct: 349 AMIVGYGQNACSEEAVRAFSEMQMDGIKPDDFTLGSVISSCANLASLEEGAQFHCLALVS 408

Query: 362 ESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVF 421
                + + N L+++Y KCG I++A+ +F  M   D VSW ++V G++  G A ET+ +F
Sbjct: 409 GLMRYITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVTGYAQFGKAKETIDLF 468

Query: 422 ESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGR 481
           E ML +G  P+ VTF+G+LSACS AGLV +G + F++M   + I P  +HY  MI+L  R
Sbjct: 469 EKMLANGLKPDGVTFIGVLSACSRAGLVEKGCDYFDSMQKDHGIVPIDDHYTCMIDLYSR 528

Query: 482 AGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVV 541
           +G+ KEAEEF+ ++P  PD   W  LL +C    GN EI + AA+ LLE DP N  ++V+
Sbjct: 529 SGRFKEAEEFIKQMPHSPDAFGWATLLSSCRL-RGNMEIGKWAAENLLETDPQNPASYVL 587

Query: 542 LCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDK 590
           LC+++AA G+  E   LR  M  + V+K PGCSW+     + +F + D+
Sbjct: 588 LCSMHAAKGQWTEVAHLRRGMRDRQVKKEPGCSWIKYKNKVHIFSADDQ 636


>gi|115443695|ref|NP_001045627.1| Os02g0106300 [Oryza sativa Japonica Group]
 gi|50252103|dbj|BAD28089.1| putative pentatricopeptide (PPR) repeat-containing protein-like
           protein [Oryza sativa Japonica Group]
 gi|113535158|dbj|BAF07541.1| Os02g0106300 [Oryza sativa Japonica Group]
 gi|215766741|dbj|BAG98969.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 751

 Score =  337 bits (865), Expect = 8e-90,   Method: Compositional matrix adjust.
 Identities = 185/589 (31%), Positives = 313/589 (53%), Gaps = 48/589 (8%)

Query: 46  NAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVV 105
           N +L+ + ++GRL+ ARR+F+EMP+ N+ +  A++  LA +  V +  +LF  MPER+ V
Sbjct: 52  NHLLTAYAKSGRLARARRVFDEMPDPNLFTRNALLSALAHSRLVPDMERLFASMPERDAV 111

Query: 106 SWNSMVVGLIRNGELNEARKVFNSM-------PIKNVISWNAMIAG-------------- 144
           S+N+++ G    G    + +++ ++       P +  +S   M+A               
Sbjct: 112 SYNALITGFSSTGSPARSVQLYRALLREESVRPTRITLSAMIMVASALSDRALGHSVHCQ 171

Query: 145 -------------------YVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEG 185
                              Y +  ++ +A  +F+EME + VV + ++I+G  R   +E+ 
Sbjct: 172 VLRLGFGAYAFVGSPLVDMYAKMGLIRDARRVFQEMEAKTVVMYNTLITGLLRCKMIEDA 231

Query: 186 YCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGY 245
             LF+ M  ++ ++WT M+ G   NG   E+L +F  M+     G   +  +  S++   
Sbjct: 232 KGLFQLMVDRDSITWTTMVTGLTQNGLQLEALDVFRRMRA---EGVGIDQYTFGSILTAC 288

Query: 246 IRFGRLEEAQNLFDTVP---VRDEI-SWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWT 301
                LEE + +   +      D +   ++++D Y     +  A  +F  M  R+ ++WT
Sbjct: 289 GALAALEEGKQIHAYITRTWYEDNVFVGSALVDMYSKCRSIRLAEAVFRRMTCRNIISWT 348

Query: 302 AMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKT 361
           AMI G  QN    EA   F EM+  G+ P + T   +  +    A+++ G Q HC+ + +
Sbjct: 349 AMIVGYGQNACSEEAVRAFSEMQMDGIKPDDFTLGSVISSCANLASLEEGAQFHCLALVS 408

Query: 362 ESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVF 421
                + + N L+++Y KCG I++A+ +F  M   D VSW ++V G++  G A ET+ +F
Sbjct: 409 GLMRYITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVTGYAQFGKAKETIDLF 468

Query: 422 ESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGR 481
           E ML +G  P+ VTF+G+LSACS AGLV +G + F++M   + I P  +HY  MI+L  R
Sbjct: 469 EKMLANGLKPDGVTFIGVLSACSRAGLVEKGCDYFDSMQKDHGIVPIDDHYTCMIDLYSR 528

Query: 482 AGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVV 541
           +G+ KEAEEF+ ++P  PD   W  LL +C    GN EI + AA+ LLE DP N  ++V+
Sbjct: 529 SGRFKEAEEFIKQMPHSPDAFGWATLLSSCRL-RGNMEIGKWAAENLLETDPQNPASYVL 587

Query: 542 LCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDK 590
           LC+++AA G+  E   LR  M  + V+K PGCSW+     + +F + D+
Sbjct: 588 LCSMHAAKGQWTEVAHLRRGMRDRQVKKEPGCSWIKYKNKVHIFSADDQ 636


>gi|15237442|ref|NP_199458.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170604|sp|Q9FHF9.1|PP419_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g46460, mitochondrial; Flags: Precursor
 gi|10177583|dbj|BAB10814.1| unnamed protein product [Arabidopsis thaliana]
 gi|332008005|gb|AED95388.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 697

 Score =  337 bits (865), Expect = 9e-90,   Method: Compositional matrix adjust.
 Identities = 187/557 (33%), Positives = 303/557 (54%), Gaps = 27/557 (4%)

Query: 48  MLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSW 107
           ++   L + R+ EAR +F ++P  +V  +T MI G   + R+ +A  LF+EMP R+VVSW
Sbjct: 41  LICNHLLSRRIDEAREVFNQVPSPHVSLYTKMITGYTRSNRLVDALNLFDEMPVRDVVSW 100

Query: 108 NSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVV 167
           NSM+ G +  G++N A K+F+ MP ++V+SW AM+ G      + +A  LF +M  ++  
Sbjct: 101 NSMISGCVECGDMNTAVKLFDEMPERSVVSWTAMVNGCFRSGKVDQAERLFYQMPVKDTA 160

Query: 168 TWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGIC 227
            W SM+ GY + G+V++   LF++MP KNV+SWT MI G   N    E+L LF  M   C
Sbjct: 161 AWNSMVHGYLQFGKVDDALKLFKQMPGKNVISWTTMICGLDQNERSGEALDLFKNMLRCC 220

Query: 228 DNGNN----CNVQSCNS--------MINGY-IRFGRLEEAQNLFDTVPVRDEISWTSMID 274
               +    C + +C +         ++G  I+ G L E            E    S+I 
Sbjct: 221 IKSTSRPFTCVITACANAPAFHMGIQVHGLIIKLGFLYE------------EYVSASLIT 268

Query: 275 GYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNAT 334
            Y +  ++ ++  +F          WTA++SG   N+   +A  +F  M  + + P  +T
Sbjct: 269 FYANCKRIGDSRKVFDEKVHEQVAVWTALLSGYSLNKKHEDALSIFSGMLRNSILPNQST 328

Query: 335 FSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMV 394
           F+    +  A   +D G+++H V +K   E+D  + N L+ MY+  G +++A ++F  + 
Sbjct: 329 FASGLNSCSALGTLDWGKEMHGVAVKLGLETDAFVGNSLVVMYSDSGNVNDAVSVFIKIF 388

Query: 395 SRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWE 454
            + +VSWNS+++G + HG       +F  M+     P+ +TF G+LSACSH G + +G +
Sbjct: 389 KKSIVSWNSIIVGCAQHGRGKWAFVIFGQMIRLNKEPDEITFTGLLSACSHCGFLEKGRK 448

Query: 455 LFNAMFD-VYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGF 513
           LF  M   +  I    +HY  M+++LGR GK+KEAEE + R+  +P+  +W ALL AC  
Sbjct: 449 LFYYMSSGINHIDRKIQHYTCMVDILGRCGKLKEAEELIERMVVKPNEMVWLALLSACRM 508

Query: 514 CEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGC 573
              + +  E AA  +  LD  ++ A+V+L NIYA++GR     KLR+ M   G+ K PG 
Sbjct: 509 -HSDVDRGEKAAAAIFNLDSKSSAAYVLLSNIYASAGRWSNVSKLRVKMKKNGIMKKPGS 567

Query: 574 SWLMRNGGIQMFLSGDK 590
           SW++  G    F SGD+
Sbjct: 568 SWVVIRGKKHEFFSGDQ 584



 Score =  177 bits (450), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 138/524 (26%), Positives = 236/524 (45%), Gaps = 86/524 (16%)

Query: 7   PKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFE 66
           P   V   T  IT Y++   + +A  LF  MP R+VVS+N+M+SG ++ G ++ A +LF+
Sbjct: 62  PSPHVSLYTKMITGYTRSNRLVDALNLFDEMPVRDVVSWNSMISGCVECGDMNTAVKLFD 121

Query: 67  EMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKV 126
           EMPER+VVSWTAM+ G   +G+V +A +LF +MP ++  +WNSMV G ++ G++++A K+
Sbjct: 122 EMPERSVVSWTAMVNGCFRSGKVDQAERLFYQMPVKDTAAWNSMVHGYLQFGKVDDALKL 181

Query: 127 FNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWT---------------- 170
           F  MP KNVISW  MI G  +    GEA+ LF+ M    + + +                
Sbjct: 182 FKQMPGKNVISWTTMICGLDQNERSGEALDLFKNMLRCCIKSTSRPFTCVITACANAPAF 241

Query: 171 -----------------------SMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGF 207
                                  S+I+ Y     + +   +F     + V  WTA++ G+
Sbjct: 242 HMGIQVHGLIIKLGFLYEEYVSASLITFYANCKRIGDSRKVFDEKVHEQVAVWTALLSGY 301

Query: 208 AWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVR--- 264
           + N  H+++L +F    G+  N    N  +  S +N     G L+  + +   V V+   
Sbjct: 302 SLNKKHEDALSIF---SGMLRNSILPNQSTFASGLNSCSALGTLDWGKEM-HGVAVKLGL 357

Query: 265 --DEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFME 322
             D     S++  Y   G V++A  +F  +  +  V+W ++I G  Q+     A  +F +
Sbjct: 358 ETDAFVGNSLVVMYSDSGNVNDAVSVFIKIFKKSIVSWNSIIVGCAQHGRGKWAFVIFGQ 417

Query: 323 MRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILEN--CLISMYAKC 380
           M      P   TF+ L  A      ++ GR++   +    +  D  +++  C++ +  +C
Sbjct: 418 MIRLNKEPDEITFTGLLSACSHCGFLEKGRKLFYYMSSGINHIDRKIQHYTCMVDILGRC 477

Query: 381 GVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGIL 440
           G +  A  +   MV +                                  PN + +L +L
Sbjct: 478 GKLKEAEELIERMVVK----------------------------------PNEMVWLALL 503

Query: 441 SACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGK 484
           SAC     V RG +   A+F++         YV + N+   AG+
Sbjct: 504 SACRMHSDVDRGEKAAAAIFNLDSKSSAA--YVLLSNIYASAGR 545



 Score = 95.5 bits (236), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 74/280 (26%), Positives = 125/280 (44%), Gaps = 19/280 (6%)

Query: 231 NNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFH 290
            N  V  CN +++      R++EA+ +F+ VP      +T MI GY    ++ +A  LF 
Sbjct: 36  QNREVLICNHLLSR-----RIDEAREVFNQVPSPHVSLYTKMITGYTRSNRLVDALNLFD 90

Query: 291 NMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDL 350
            MP RD V+W +MISG V+      A  LF EM    V    A  +  F     +  +D 
Sbjct: 91  EMPVRDVVSWNSMISGCVECGDMNTAVKLFDEMPERSVVSWTAMVNGCF----RSGKVDQ 146

Query: 351 GRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSH 410
             +    L       D    N ++  Y + G +D+A  +F  M  ++++SW +M+ G   
Sbjct: 147 AER----LFYQMPVKDTAAWNSMVHGYLQFGKVDDALKLFKQMPGKNVISWTTMICGLDQ 202

Query: 411 HGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPE 470
           +  + E L +F++ML       S  F  +++AC++A     G ++      + K+    E
Sbjct: 203 NERSGEALDLFKNMLRCCIKSTSRPFTCVITACANAPAFHMGIQVHGL---IIKLGFLYE 259

Query: 471 HYV--SMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALL 508
            YV  S+I       +I ++ + V          +W ALL
Sbjct: 260 EYVSASLITFYANCKRIGDSRK-VFDEKVHEQVAVWTALL 298


>gi|302802806|ref|XP_002983157.1| hypothetical protein SELMODRAFT_117419 [Selaginella moellendorffii]
 gi|300149310|gb|EFJ15966.1| hypothetical protein SELMODRAFT_117419 [Selaginella moellendorffii]
          Length = 704

 Score =  337 bits (865), Expect = 9e-90,   Method: Compositional matrix adjust.
 Identities = 188/595 (31%), Positives = 326/595 (54%), Gaps = 19/595 (3%)

Query: 7   PKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFE 66
           P   VV   S I  +S+ GF+  A  +F  MP+ +  S+N+M++G+ Q+G L+ A  +F+
Sbjct: 21  PSHNVVSWNSLIAGFSQHGFMSNADEIFARMPRWSSSSWNSMITGYAQSGDLAGATAMFD 80

Query: 67  EMPERNVVSWTAMICGLADAGRVCEARK-LFEEMPERNVVSWNSMVVGLIRNGELNEARK 125
             PE NV+SW A+I G +D   + EA+  +F+EMP R  VSWN+++    + G ++ AR 
Sbjct: 81  RTPEHNVISWNALITGYSDNRMIPEAKGVIFDEMPRREEVSWNALLSAYAQAGHVHLARS 140

Query: 126 VFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEG 185
            F  MP  +V++W A+IA   +   + EA VL++ + ER++V WT++I  Y   G++ E 
Sbjct: 141 TFERMPRHDVVAWTALIAVSGQNGQLEEAEVLYDLIPERDLVAWTALIQAYGVNGQLTES 200

Query: 186 YCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGY 245
             ++  MP +N VS TAMI  ++ NG         ++ + + D   + +  +  SMI  Y
Sbjct: 201 KRVYALMPERNRVSHTAMIIAYSQNG-------EVVQARKMLDTLPDPDQSTRTSMIVAY 253

Query: 246 IRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMIS 305
            + G +++A+ +FD++   D I+  +M++ Y S   + +A  +F ++  +  V+W  M++
Sbjct: 254 AQNGYIKDAREMFDSIKNPDVIACNAMMEAYSSAQMLDHAKAMFDSIKQKTLVSWNTMVA 313

Query: 306 GLVQNELFVEATYLFMEMRAHGVPPLNA-TFSVLFGAAGATANIDLGRQIHCVLMKTESE 364
              Q     EA  +F       +P  N  + +V+  A     ++   R+I   +     E
Sbjct: 314 AYAQAGNLDEAKSIF-----DSIPHKNVVSHNVMVVAYAHNMDLAEARRIFYSM----DE 364

Query: 365 SDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESM 424
            D +    +++M A+ G +  A  +F+ M  R++VSWNS++ G +  G     ++    M
Sbjct: 365 KDTVTWTAMVAMLAQHGRLAEAQELFAKMPYRNVVSWNSLIAGMASCGHGMAAVRYLYVM 424

Query: 425 LESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGK 484
              G  P+ +TF+GIL ACSH GLV  GW  F +M   + + P  EHY  M+++LGRAG+
Sbjct: 425 RNEGAKPDHITFMGILIACSHVGLVEEGWTHFTSMQGDHGLIPWREHYCRMVDVLGRAGQ 484

Query: 485 IKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCN 544
           +  A E +  +PF PD   WG+LLG+C     + ++   AA+ LL+ D  ++  +V+L N
Sbjct: 485 LGAARELLETMPFIPDVGAWGSLLGSCK-THSDVKLGTRAAESLLQFDDQSSGPYVLLAN 543

Query: 545 IYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEIL 599
           +Y++ GR  +   +R  M  +GV+K PG S +  +G +  F++G+    +  EIL
Sbjct: 544 MYSSVGRVADALAVRNRMKARGVKKQPGVSLIRVDGVLHRFVAGEASHPRHQEIL 598



 Score = 48.9 bits (115), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 53/241 (21%), Positives = 100/241 (41%), Gaps = 63/241 (26%)

Query: 374 ISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVF------------ 421
           + +Y++ G + +A  IF  + S ++VSWNS++ GFS HG  +   ++F            
Sbjct: 1   MQVYSENGDLGSAKAIFDQIPSHNVVSWNSLIAGFSQHGFMSNADEIFARMPRWSSSSWN 60

Query: 422 ---------------ESMLESGTHPNSVTFLGILSACSHAGLVSRGWEL----------- 455
                           +M +     N +++  +++  S   ++     +           
Sbjct: 61  SMITGYAQSGDLAGATAMFDRTPEHNVISWNALITGYSDNRMIPEAKGVIFDEMPRREEV 120

Query: 456 -FNAMFDVYKIQPG------------PEH----YVSMINLLGRAGKIKEAEEFVLRLPFE 498
            +NA+   Y  Q G            P H    + ++I + G+ G+++EAE     +P E
Sbjct: 121 SWNALLSAYA-QAGHVHLARSTFERMPRHDVVAWTALIAVSGQNGQLEEAEVLYDLIP-E 178

Query: 499 PDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDP-LNAPAHVVLCNIYAASGRHVEEHK 557
            D   W AL+ A G    N ++ E  +KR+  L P  N  +H  +   Y+ +G  V+  K
Sbjct: 179 RDLVAWTALIQAYGV---NGQLTE--SKRVYALMPERNRVSHTAMIIAYSQNGEVVQARK 233

Query: 558 L 558
           +
Sbjct: 234 M 234


>gi|357440933|ref|XP_003590744.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355479792|gb|AES60995.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 795

 Score =  337 bits (863), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 207/634 (32%), Positives = 333/634 (52%), Gaps = 54/634 (8%)

Query: 7   PKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQ--RNVVSYNAMLSGFLQNGRLSEARRL 64
           PK  +V  T+ ++ YS  G +  A+ LF   P   R+ VSYNAM++ +        A  L
Sbjct: 67  PKPDIVARTTLLSAYSSSGNVKLAQQLFNATPLTIRDTVSYNAMITAYSHGNDGHAALNL 126

Query: 65  FEEMPERNVV----SWTAMICGL---ADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRN 117
           F +M     +    ++++++  L   AD  R C+       M    V+   ++++  + N
Sbjct: 127 FVQMKRYGFLPDPFTFSSVLSALSLIADEERHCQ-------MLHCEVIKLGTLLIPSVTN 179

Query: 118 GELN------------------EARKVFNSMPIKNVI---SWNAMIAGYVECCMMGEAIV 156
             L+                   ARKVF+  P KN I   SW  MIAGYV    +  A  
Sbjct: 180 ALLSCYVCCASSPLVKSSQLMASARKVFDETP-KNQIYEPSWTTMIAGYVRNDDLVAARE 238

Query: 157 LFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMP----RKNVVSWTAMIGGFAWNGF 212
           L + +     V W +MISGY R G  EE +  FRRM     +++  ++T++I      G 
Sbjct: 239 LLDGLTYPIDVAWNAMISGYVRRGLYEEAFDTFRRMHSMGIQEDEYTYTSLISAC---GS 295

Query: 213 HKESLLLF--------IEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVR 264
             E + +F          ++ + +  ++  +   N++I  Y ++ R+ EA+ +FD +PVR
Sbjct: 296 CNEKMGMFNCGRQVHGYILRTVVEPSHHFVLSVNNALITFYTKYDRMIEARRVFDKMPVR 355

Query: 265 DEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMR 324
           D ISW +++ GY++  ++  A  +F  MP+R+ + WT MISGL QN    E   LF +M+
Sbjct: 356 DIISWNAVLSGYVNAQRIEEANSIFSEMPERNVLTWTVMISGLAQNGFGEEGLKLFNQMK 415

Query: 325 AHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVID 384
           + G+ P +  F+    A     ++D G+QIH  +++   +S L   N LI+MY++CGV++
Sbjct: 416 SEGLEPCDYAFAGAITACSVLGSLDNGQQIHSQVIRLGHDSGLSAGNALITMYSRCGVVE 475

Query: 385 NAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACS 444
           +A ++F  M   D VSWN+M+   + HG   + +++FE M++    P+ +TFL IL+AC+
Sbjct: 476 SAESVFLTMPYVDSVSWNAMIAALAQHGHGVKAIELFEQMMKEDILPDRITFLTILTACN 535

Query: 445 HAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIW 504
           HAGL+  G   F+ M   Y I PG +HY  +I+LL RAG   +A+  +  +PFE    IW
Sbjct: 536 HAGLIKEGRHYFDTMCTRYGITPGEDHYARLIDLLCRAGMFLKAQSVIKSMPFEAGAPIW 595

Query: 505 GALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGL 564
            ALL  C    GN E+   AA RLLEL P     +++L N+YAA G+  E  ++R+ M  
Sbjct: 596 EALLAGCRI-HGNMELGIQAADRLLELIPGQDGTYIILSNMYAALGQWDEVARVRLLMRE 654

Query: 565 KGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
           +GV+K PGCSW+     + +FL  D    +V  +
Sbjct: 655 RGVKKEPGCSWVEVENMVHVFLVDDARHPEVQAV 688



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 76/297 (25%), Positives = 130/297 (43%), Gaps = 26/297 (8%)

Query: 226 ICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNA 285
           I  +G   N    N +IN Y +   +  A+ LFD +P  D ++ T+++  Y S G V  A
Sbjct: 31  ILTSGFKPNTFILNRLINIYCKSSNITYARKLFDKIPKPDIVARTTLLSAYSSSGNVKLA 90

Query: 286 YYLFHNMP--DRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAG 343
             LF+  P   RD V++ AMI+          A  LF++M+ +G  P   TFS +  A  
Sbjct: 91  QQLFNATPLTIRDTVSYNAMITAYSHGNDGHAALNLFVQMKRYGFLPDPFTFSSVLSALS 150

Query: 344 ATANIDLGRQ-IHCVLMKTESESDLILENCLISMYAKCG---------VIDNAYNIFSNM 393
             A+ +   Q +HC ++K  +     + N L+S Y  C          ++ +A  +F   
Sbjct: 151 LIADEERHCQMLHCEVIKLGTLLIPSVTNALLSCYVCCASSPLVKSSQLMASARKVFDET 210

Query: 394 VSRDLV--SWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSR 451
               +   SW +M+ G+    + N+ L     +L+  T+P  V +  ++S     GL   
Sbjct: 211 PKNQIYEPSWTTMIAGY----VRNDDLVAARELLDGLTYPIDVAWNAMISGYVRRGLYEE 266

Query: 452 GWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKI-------KEAEEFVLRLPFEPDH 501
            ++ F  M  +  IQ     Y S+I+  G   +        ++   ++LR   EP H
Sbjct: 267 AFDTFRRMHSM-GIQEDEYTYTSLISACGSCNEKMGMFNCGRQVHGYILRTVVEPSH 322


>gi|297794613|ref|XP_002865191.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297311026|gb|EFH41450.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 697

 Score =  336 bits (862), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 187/557 (33%), Positives = 306/557 (54%), Gaps = 27/557 (4%)

Query: 48  MLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSW 107
           ++   L N RL EAR +F+++P  +V  +T MI G   + R+ +A  LF+EMP R+VVSW
Sbjct: 41  LICNHLLNRRLDEAREVFDQVPSPHVSLYTKMISGYTRSNRLVDALNLFDEMPLRDVVSW 100

Query: 108 NSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVV 167
           NSM+ G +  G+++ A K+F+ MP ++V+SW AM+ G     M+ +A  LF +M  +++ 
Sbjct: 101 NSMISGCVECGDIDTAVKMFDEMPERSVVSWTAMVNGCFRFGMVDQAERLFCQMPVKDIA 160

Query: 168 TWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGIC 227
            W +M+ GY + G+V++   LF++MPRKNV+SWT MI G   N    E+L LF  M   C
Sbjct: 161 AWNAMVHGYLQFGKVDDALKLFKQMPRKNVISWTTMICGLDQNERSGEALNLFKNMLRCC 220

Query: 228 DNGNN----CNVQSC--------NSMINGY-IRFGRLEEAQNLFDTVPVRDEISWTSMID 274
               +    C + +C         + ++G+ I+ G L E            E    S+I 
Sbjct: 221 IKSTSRTFTCVITACANAPAFHMGTQVHGFIIKSGFLYE------------EYVTASLIT 268

Query: 275 GYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNAT 334
            Y +  +  ++  +F  M       WTA++SG   N    +A  +F EM  + + P  +T
Sbjct: 269 LYANCKRTEDSRKVFGEMVHEKVAVWTALLSGYSLNRKHEDALNVFSEMIRNSILPNQST 328

Query: 335 FSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMV 394
           F+    +  A   +D G++IH V +K    +   + N L+ MY+  G +++A ++F  + 
Sbjct: 329 FASGLNSCSALGTLDWGKEIHGVAVKLGLGTVAFVGNSLVVMYSDSGNVNDAVSVFIEIF 388

Query: 395 SRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWE 454
            + +VSWNS+++G + HG       +F  M+     P+ +TF G+LSACSH G + +G +
Sbjct: 389 KKSIVSWNSIIVGCAQHGRGKWAFVIFGQMIRLNKEPDEITFTGLLSACSHCGFLQKGRK 448

Query: 455 LFNAMFD-VYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGF 513
           LF  +   +  I    +HY  M+++LGR G++KEAE+ +  +  +P+  +W ALL AC  
Sbjct: 449 LFYYISSGLNHIDRKIQHYTCMVDILGRCGELKEAEKLIESMVVKPNEMVWLALLSACRM 508

Query: 514 CEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGC 573
              + +  E AA  +  LD  ++ A+V+L NIYA++GR     KLR+ M  KG+ K PG 
Sbjct: 509 -HSDVDRGEKAAAAIFNLDSKSSAAYVLLSNIYASAGRWSSVSKLRVKMKQKGIMKKPGS 567

Query: 574 SWLMRNGGIQMFLSGDK 590
           SW++  G    F SGD+
Sbjct: 568 SWVVIRGKKHEFFSGDR 584



 Score =  172 bits (435), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 144/534 (26%), Positives = 238/534 (44%), Gaps = 82/534 (15%)

Query: 7   PKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFE 66
           P   V   T  I+ Y++   + +A  LF  MP R+VVS+N+M+SG ++ G +  A ++F+
Sbjct: 62  PSPHVSLYTKMISGYTRSNRLVDALNLFDEMPLRDVVSWNSMISGCVECGDIDTAVKMFD 121

Query: 67  EMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKV 126
           EMPER+VVSWTAM+ G    G V +A +LF +MP +++ +WN+MV G ++ G++++A K+
Sbjct: 122 EMPERSVVSWTAMVNGCFRFGMVDQAERLFCQMPVKDIAAWNAMVHGYLQFGKVDDALKL 181

Query: 127 FNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEME----ERNVVTWT------------ 170
           F  MP KNVISW  MI G  +    GEA+ LF+ M     +    T+T            
Sbjct: 182 FKQMPRKNVISWTTMICGLDQNERSGEALNLFKNMLRCCIKSTSRTFTCVITACANAPAF 241

Query: 171 -----------------------SMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGF 207
                                  S+I+ Y      E+   +F  M  + V  WTA++ G+
Sbjct: 242 HMGTQVHGFIIKSGFLYEEYVTASLITLYANCKRTEDSRKVFGEMVHEKVAVWTALLSGY 301

Query: 208 AWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEI 267
           + N  H+++L +F EM     N    N  +  S +N     G L+  + +   V V+  +
Sbjct: 302 SLNRKHEDALNVFSEM---IRNSILPNQSTFASGLNSCSALGTLDWGKEI-HGVAVKLGL 357

Query: 268 SWTSMIDGYLSV-----GQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFME 322
              + +   L V     G V++A  +F  +  +  V+W ++I G  Q+     A  +F +
Sbjct: 358 GTVAFVGNSLVVMYSDSGNVNDAVSVFIEIFKKSIVSWNSIIVGCAQHGRGKWAFVIFGQ 417

Query: 323 MRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGV 382
           M      P   TF+ L  A      +  GR++                      Y   G+
Sbjct: 418 MIRLNKEPDEITFTGLLSACSHCGFLQKGRKLF--------------------YYISSGL 457

Query: 383 IDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSA 442
                    N + R +  +  MV      G   E  K+ ESM+     PN + +L +LSA
Sbjct: 458 ---------NHIDRKIQHYTCMVDILGRCGELKEAEKLIESMV---VKPNEMVWLALLSA 505

Query: 443 CSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLP 496
           C     V RG +   A+F++         YV + N+   AG+     +  +++ 
Sbjct: 506 CRMHSDVDRGEKAAAAIFNLDSKSSAA--YVLLSNIYASAGRWSSVSKLRVKMK 557



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 78/282 (27%), Positives = 131/282 (46%), Gaps = 23/282 (8%)

Query: 231 NNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFH 290
            N  V  CN ++N      RL+EA+ +FD VP      +T MI GY    ++ +A  LF 
Sbjct: 36  QNREVLICNHLLNR-----RLDEAREVFDQVPSPHVSLYTKMISGYTRSNRLVDALNLFD 90

Query: 291 NMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDL 350
            MP RD V+W +MISG V+      A  +F EM    V    A  +  F        +D 
Sbjct: 91  EMPLRDVVSWNSMISGCVECGDIDTAVKMFDEMPERSVVSWTAMVNGCF----RFGMVDQ 146

Query: 351 GRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSH 410
             ++ C +       D+   N ++  Y + G +D+A  +F  M  ++++SW +M+ G   
Sbjct: 147 AERLFCQM----PVKDIAAWNAMVHGYLQFGKVDDALKLFKQMPRKNVISWTTMICGLDQ 202

Query: 411 HGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPG-- 468
           +  + E L +F++ML       S TF  +++AC++A     G ++       + I+ G  
Sbjct: 203 NERSGEALNLFKNMLRCCIKSTSRTFTCVITACANAPAFHMGTQVHG-----FIIKSGFL 257

Query: 469 PEHYV--SMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALL 508
            E YV  S+I L     + +++ +    +  E    +W ALL
Sbjct: 258 YEEYVTASLITLYANCKRTEDSRKVFGEMVHEKV-AVWTALL 298


>gi|449485565|ref|XP_004157209.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 953

 Score =  336 bits (862), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 181/503 (35%), Positives = 279/503 (55%), Gaps = 33/503 (6%)

Query: 120 LNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRA 179
           + +A +VFN   + + +SWN+++AGY+E   + EA  ++ +M ER+++   SMI  +   
Sbjct: 264 MTDACRVFNESSVLDSVSWNSILAGYIEIGNVEEAKHIYHQMPERSIIASNSMIVLFGMR 323

Query: 180 GEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGI------------- 226
           G V E   LF  M  K++V+W+A+I  F  N  ++E++  F+ M  I             
Sbjct: 324 GLVVEACKLFDEMLEKDMVTWSALIACFQQNEMYEEAIRTFVGMHKIGVMVDEVVAVSAL 383

Query: 227 --CDN-----------------GNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEI 267
             C N                 G    +   N++I  Y + G +  A+ LFD   + D I
Sbjct: 384 SACANLLVVNMGKLIHSLSLKIGTESYINLQNALIYMYSKCGDIMVARKLFDEAYLLDLI 443

Query: 268 SWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHG 327
           SW SMI GYL    V NA  +F +MP++D V+W++MISG  QN+LF E   LF EM+  G
Sbjct: 444 SWNSMISGYLKCNLVDNAKAIFDSMPEKDVVSWSSMISGYAQNDLFDETLALFQEMQMSG 503

Query: 328 VPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAY 387
             P   T   +  A    A ++ G+ +H  + +     ++IL   LI MY KCG ++ A 
Sbjct: 504 FKPDETTLVSVISACARLAALEQGKWVHAYIKRNGLTINVILGTTLIDMYMKCGCVETAL 563

Query: 388 NIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAG 447
            +F  M+ + + +WN++++G + +GL   +L +F +M +    PN +TF+G+L AC H G
Sbjct: 564 EVFYGMIEKGISTWNALILGLAMNGLVESSLDMFSNMKKCHVTPNEITFMGVLGACRHMG 623

Query: 448 LVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGAL 507
           LV  G   F +M   +KIQP  +HY  M++LLGRAGK++EAEE + R+P  PD   WGAL
Sbjct: 624 LVDEGQHHFYSMIHDHKIQPNVKHYGCMVDLLGRAGKLQEAEELLNRMPMTPDVATWGAL 683

Query: 508 LGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGV 567
           LGAC    G++E+     ++L+EL P +   HV+L NIYA+ G+  +  ++R  M    V
Sbjct: 684 LGACK-KHGDSEMGRRVGRKLIELQPDHDGFHVLLSNIYASKGKWDDVLEIRGMMTKHRV 742

Query: 568 RKVPGCSWLMRNGGIQMFLSGDK 590
            K+PGCS +  NG I  FL+GDK
Sbjct: 743 LKIPGCSMIEANGVIHEFLAGDK 765



 Score =  162 bits (411), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 115/444 (25%), Positives = 214/444 (48%), Gaps = 50/444 (11%)

Query: 43  VSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPER 102
           VS+N++L+G+++ G + EA+ ++ +MPER++++  +MI      G V EA KLF+EM E+
Sbjct: 280 VSWNSILAGYIEIGNVEEAKHIYHQMPERSIIASNSMIVLFGMRGLVVEACKLFDEMLEK 339

Query: 103 NVVSWNSMVVGLIRNGELNEARKVFNSMP-----IKNVIS-------------------- 137
           ++V+W++++    +N    EA + F  M      +  V++                    
Sbjct: 340 DMVTWSALIACFQQNEMYEEAIRTFVGMHKIGVMVDEVVAVSALSACANLLVVNMGKLIH 399

Query: 138 --------------WNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVE 183
                          NA+I  Y +C  +  A  LF+E    ++++W SMISGY +   V+
Sbjct: 400 SLSLKIGTESYINLQNALIYMYSKCGDIMVARKLFDEAYLLDLISWNSMISGYLKCNLVD 459

Query: 184 EGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMIN 243
               +F  MP K+VVSW++MI G+A N    E+L LF EM+    +G   +  +  S+I+
Sbjct: 460 NAKAIFDSMPEKDVVSWSSMISGYAQNDLFDETLALFQEMQM---SGFKPDETTLVSVIS 516

Query: 244 GYIRFGRLEEAQNLFDTVP----VRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVA 299
              R   LE+ + +   +       + I  T++ID Y+  G V  A  +F+ M ++    
Sbjct: 517 ACARLAALEQGKWVHAYIKRNGLTINVILGTTLIDMYMKCGCVETALEVFYGMIEKGIST 576

Query: 300 WTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGR-QIHCVL 358
           W A+I GL  N L   +  +F  M+   V P   TF  + GA      +D G+   + ++
Sbjct: 577 WNALILGLAMNGLVESSLDMFSNMKKCHVTPNEITFMGVLGACRHMGLVDEGQHHFYSMI 636

Query: 359 MKTESESDLILENCLISMYAKCGVIDNAYNIFSNM-VSRDLVSWNSMVMGFSHHGLANET 417
              + + ++    C++ +  + G +  A  + + M ++ D+ +W +++     HG +   
Sbjct: 637 HDHKIQPNVKHYGCMVDLLGRAGKLQEAEELLNRMPMTPDVATWGALLGACKKHGDSEMG 696

Query: 418 LKVFESMLESGTHPNSVTFLGILS 441
            +V   ++E    P+   F  +LS
Sbjct: 697 RRVGRKLIE--LQPDHDGFHVLLS 718



 Score =  128 bits (322), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 82/288 (28%), Positives = 136/288 (47%), Gaps = 68/288 (23%)

Query: 230 GNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLF 289
           G + +V   N++IN +     + +A  +F+   V D +SW S++ GY+ +G V  A +++
Sbjct: 243 GFDSDVYVRNTLINCFSVCSNMTDACRVFNESSVLDSVSWNSILAGYIEIGNVEEAKHIY 302

Query: 290 HNMPDR-------------------------------DAVAWTAMISGLVQNELFVEATY 318
           H MP+R                               D V W+A+I+   QNE++ EA  
Sbjct: 303 HQMPERSIIASNSMIVLFGMRGLVVEACKLFDEMLEKDMVTWSALIACFQQNEMYEEAIR 362

Query: 319 LFMEMRAHGVPPLNATFSVLFGAAGATAN---IDLGRQIHCVLMKTESESDLILENCLIS 375
            F+ M   GV        V   A  A AN   +++G+ IH + +K  +ES + L+N LI 
Sbjct: 363 TFVGMHKIGV---MVDEVVAVSALSACANLLVVNMGKLIHSLSLKIGTESYINLQNALIY 419

Query: 376 MYAKCG-------------------------------VIDNAYNIFSNMVSRDLVSWNSM 404
           MY+KCG                               ++DNA  IF +M  +D+VSW+SM
Sbjct: 420 MYSKCGDIMVARKLFDEAYLLDLISWNSMISGYLKCNLVDNAKAIFDSMPEKDVVSWSSM 479

Query: 405 VMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRG 452
           + G++ + L +ETL +F+ M  SG  P+  T + ++SAC+    + +G
Sbjct: 480 ISGYAQNDLFDETLALFQEMQMSGFKPDETTLVSVISACARLAALEQG 527



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 65/245 (26%), Positives = 109/245 (44%), Gaps = 49/245 (20%)

Query: 16  SSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEM------P 69
           S I+ Y K   +D AKA+F  MP+++VVS+++M+SG+ QN    E   LF+EM      P
Sbjct: 447 SMISGYLKCNLVDNAKAIFDSMPEKDVVSWSSMISGYAQNDLFDETLALFQEMQMSGFKP 506

Query: 70  ER---------------------------------NVVSWTAMICGLADAGRVCEARKLF 96
           +                                  NV+  T +I      G V  A ++F
Sbjct: 507 DETTLVSVISACARLAALEQGKWVHAYIKRNGLTINVILGTTLIDMYMKCGCVETALEVF 566

Query: 97  EEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECC----MMG 152
             M E+ + +WN++++GL  NG +  +  +F++M   +V        G +  C    ++ 
Sbjct: 567 YGMIEKGISTWNALILGLAMNGLVESSLDMFSNMKKCHVTPNEITFMGVLGACRHMGLVD 626

Query: 153 EAIVLFEEM-----EERNVVTWTSMISGYCRAGEVEEGYCLFRRMP-RKNVVSWTAMIGG 206
           E    F  M      + NV  +  M+    RAG+++E   L  RMP   +V +W A++G 
Sbjct: 627 EGQHHFYSMIHDHKIQPNVKHYGCMVDLLGRAGKLQEAEELLNRMPMTPDVATWGALLGA 686

Query: 207 FAWNG 211
              +G
Sbjct: 687 CKKHG 691



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 37/140 (26%), Positives = 69/140 (49%), Gaps = 10/140 (7%)

Query: 15  TSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNV- 73
           T+ I  Y K G ++ A  +F  M ++ + ++NA++ G   NG +  +  +F  M + +V 
Sbjct: 547 TTLIDMYMKCGCVETALEVFYGMIEKGISTWNALILGLAMNGLVESSLDMFSNMKKCHVT 606

Query: 74  ---VSWTAMICGLADAGRVCEARKLFEEM-----PERNVVSWNSMVVGLIRNGELNEARK 125
              +++  ++      G V E +  F  M      + NV  +  MV  L R G+L EA +
Sbjct: 607 PNEITFMGVLGACRHMGLVDEGQHHFYSMIHDHKIQPNVKHYGCMVDLLGRAGKLQEAEE 666

Query: 126 VFNSMPIK-NVISWNAMIAG 144
           + N MP+  +V +W A++  
Sbjct: 667 LLNRMPMTPDVATWGALLGA 686



 Score = 48.5 bits (114), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 39/147 (26%), Positives = 70/147 (47%), Gaps = 6/147 (4%)

Query: 316 ATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLIS 375
           A  L+  M ++ +   N T+ +L  A     +    +Q+H  ++K   +SD+ + N LI+
Sbjct: 197 AFTLYKSMLSNYLGADNYTYPLLIQACSIRRSEWEAKQVHNHVLKLGFDSDVYVRNTLIN 256

Query: 376 MYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLE-SGTHPNSV 434
            ++ C  + +A  +F+     D VSWNS++ G+   G   E   ++  M E S    NS+
Sbjct: 257 CFSVCSNMTDACRVFNESSVLDSVSWNSILAGYIEIGNVEEAKHIYHQMPERSIIASNSM 316

Query: 435 TFLGILSACSHAGLVSRGWELFNAMFD 461
             L  +      GLV    +LF+ M +
Sbjct: 317 IVLFGMR-----GLVVEACKLFDEMLE 338


>gi|224092370|ref|XP_002309579.1| predicted protein [Populus trichocarpa]
 gi|222855555|gb|EEE93102.1| predicted protein [Populus trichocarpa]
          Length = 854

 Score =  335 bits (860), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 191/599 (31%), Positives = 320/599 (53%), Gaps = 45/599 (7%)

Query: 40  RNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEM 99
           RN    N ++  + + G+L E  +LFE+M  R+V+SW  MI      G   EA  LF+EM
Sbjct: 166 RNKSLNNNLMGLYSKCGKLKEVCQLFEKMTHRDVISWNTMISCYVLKGMYREALDLFDEM 225

Query: 100 PERNVVSWNSMVVGLI------RNGELNEARKVF---NSMPIKNVISWNAMIAGYVECCM 150
               V+     +V L+      ++ E+ +   ++   N + I+  +  N ++  Y +C  
Sbjct: 226 LVSGVLPDEITMVSLVSTCAKLKDLEMGKRLHLYIVDNKLWIRGSL-LNCLVDMYSKCGK 284

Query: 151 MGEAIVLFEEMEER--NVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFA 208
           M EA  L    +E   +VV WT+++SGY ++ ++++   LF +M  +++VSWT M+ G+ 
Sbjct: 285 MDEAHGLLSRCDESEVDVVLWTTLVSGYVKSNKIDKARQLFDKMNERSLVSWTTMMSGYV 344

Query: 209 WNGFHKESLLLFIEMKG---ICDNGNNCNVQSC--------------------------- 238
             G++ ESL LF +M+    I D      V S                            
Sbjct: 345 QGGYYCESLELFQQMRFENVIPDEVALVTVLSACVHLEDFDLGRSVHAFIVTYGMLVDGF 404

Query: 239 --NSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRD 296
             N++++ Y + G+L+EA   F+ +P +   SW SM+DG+   G V  A   F+ +P++D
Sbjct: 405 LGNALLDLYAKCGKLDEALRTFEQLPCKSAASWNSMLDGFCRSGGVDKARDFFNKIPEKD 464

Query: 297 AVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHC 356
            V+W  M++  V+++LF E+  +F +M++  V P   T   L  +      ++ G  ++ 
Sbjct: 465 IVSWNTMVNAYVKHDLFNESFEIFCKMQSSNVKPDKTTLISLLSSCAKVGALNHGIWVNV 524

Query: 357 VLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANE 416
            + K E   D +L   LI MY KCG ++ AY IF+ ++ +++  W +M+  ++  G A E
Sbjct: 525 YIEKNEIGIDAMLGTALIDMYGKCGCVEMAYEIFTQIIEKNVFVWTAMMAAYAMEGQALE 584

Query: 417 TLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMI 476
            + ++  M E G  P+ VTF+ +L+ACSH GLV  G++ FN +   Y I P   HY  M+
Sbjct: 585 AIDLYLEMEERGVKPDHVTFIALLAACSHGGLVDEGYKYFNKLRSFYNIIPTIHHYGCMV 644

Query: 477 NLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNA 536
           +LLGR G ++E  +F+ R+P EPD  IW +L+ AC     N E+AE A K+L+E+DP N 
Sbjct: 645 DLLGRVGHLEETVKFIERMPIEPDVSIWSSLMRACR-SHHNVELAEQAFKQLIEIDPTNN 703

Query: 537 PAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQV 595
            AHV+L NIYA +GR  +  K+R  +   GV K PG + + +NG +  F++ + + A +
Sbjct: 704 GAHVLLSNIYADAGRWDDVSKVRTKLHETGVPKQPGFTMIEQNGVVHEFVASNLVSADI 762



 Score =  128 bits (321), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 115/475 (24%), Positives = 203/475 (42%), Gaps = 99/475 (20%)

Query: 11  VVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPE 70
           VV  T+ ++ Y K   ID+A+ LF  M +R++VS+  M+SG++Q G   E+  LF++M  
Sbjct: 302 VVLWTTLVSGYVKSNKIDKARQLFDKMNERSLVSWTTMMSGYVQGGYYCESLELFQQMRF 361

Query: 71  RNV------------------------------VSWTAMICGL---------ADAGRVCE 91
            NV                              V++  ++ G          A  G++ E
Sbjct: 362 ENVIPDEVALVTVLSACVHLEDFDLGRSVHAFIVTYGMLVDGFLGNALLDLYAKCGKLDE 421

Query: 92  ARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMM 151
           A + FE++P ++  SWNSM+ G  R+G +++AR  FN +P K+++SWN M+  YV+  + 
Sbjct: 422 ALRTFEQLPCKSAASWNSMLDGFCRSGGVDKARDFFNKIPEKDIVSWNTMVNAYVKHDLF 481

Query: 152 GEAIVLFEEMEERNVV----------------------TW-----------------TSM 172
            E+  +F +M+  NV                        W                 T++
Sbjct: 482 NESFEIFCKMQSSNVKPDKTTLISLLSSCAKVGALNHGIWVNVYIEKNEIGIDAMLGTAL 541

Query: 173 ISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNN 232
           I  Y + G VE  Y +F ++  KNV  WTAM+  +A  G   E++ L++EM+      ++
Sbjct: 542 IDMYGKCGCVEMAYEIFTQIIEKNVFVWTAMMAAYAMEGQALEAIDLYLEMEERGVKPDH 601

Query: 233 CN----VQSCNS---MINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNA 285
                 + +C+    +  GY  F +L    N+  T+       +  M+D    VG +   
Sbjct: 602 VTFIALLAACSHGGLVDEGYKYFNKLRSFYNIIPTIH-----HYGCMVDLLGRVGHLEET 656

Query: 286 YYLFHNMP-DRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGA 344
                 MP + D   W++++     +     A   F ++    + P N    VL     A
Sbjct: 657 VKFIERMPIEPDVSIWSSLMRACRSHHNVELAEQAFKQLIE--IDPTNNGAHVLLSNIYA 714

Query: 345 TANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLV 399
               D GR      ++T+     + +    +M  + GV+     + SN+VS D++
Sbjct: 715 ----DAGRWDDVSKVRTKLHETGVPKQPGFTMIEQNGVVHEF--VASNLVSADIL 763



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 59/242 (24%), Positives = 112/242 (46%), Gaps = 4/242 (1%)

Query: 277 LSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFS 336
           LSV  +  A+ +     + +++ W  ++   ++     E    +  M   GV    +TF 
Sbjct: 78  LSVNNLDCAHQILSYSHEPESIIWNTLLENKLKEGCPQEVLECYYHMVTQGVLLDISTFH 137

Query: 337 VLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSR 396
            L  A     ++ LG ++H  ++K     +  L N L+ +Y+KCG +     +F  M  R
Sbjct: 138 FLIHACCKNFDVKLGSEVHGRILKCGFGRNKSLNNNLMGLYSKCGKLKEVCQLFEKMTHR 197

Query: 397 DLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELF 456
           D++SWN+M+  +   G+  E L +F+ ML SG  P+ +T + ++S C+    +  G  L 
Sbjct: 198 DVISWNTMISCYVLKGMYREALDLFDEMLVSGVLPDEITMVSLVSTCAKLKDLEMGKRLH 257

Query: 457 NAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLP-FEPDHRIWGALLGACGFCE 515
             + D  K+         ++++  + GK+ EA   + R    E D  +W  L+   G+ +
Sbjct: 258 LYIVD-NKLWIRGSLLNCLVDMYSKCGKMDEAHGLLSRCDESEVDVVLWTTLVS--GYVK 314

Query: 516 GN 517
            N
Sbjct: 315 SN 316


>gi|168044807|ref|XP_001774871.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162673765|gb|EDQ60283.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 902

 Score =  335 bits (859), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 204/629 (32%), Positives = 323/629 (51%), Gaps = 55/629 (8%)

Query: 21  YSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVV------ 74
           Y+K G I+EA+ +F  M +++VVS+   + G+   GR   A  +F++M +  VV      
Sbjct: 171 YAKCGSIEEAREVFDKMEKKSVVSWTITIGGYADCGRSETAFEIFQKMEQEGVVPNRITY 230

Query: 75  -------------SW--------------------TAMICGLADAGRVCEARKLFEEMPE 101
                         W                    TA++   A  G   + R++FE++  
Sbjct: 231 ISVLNAFSSPAALKWGKAVHSRILNAGHESDTAVGTALVKMYAKCGSYKDCRQVFEKLVN 290

Query: 102 RNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEM 161
           R++++WN+M+ GL   G   EA +V+N M  + V+         +  C+   A+   +E+
Sbjct: 291 RDLIAWNTMIGGLAEGGYWEEASEVYNQMQREGVMPNKITYVILLNACVNSAALHWGKEI 350

Query: 162 EER--------NVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFH 213
             R        ++    ++IS Y R G +++   +F +M RK+V+SWTAMIGG A +GF 
Sbjct: 351 HSRVAKAGFTSDIGVQNALISMYSRCGSIKDARLVFDKMVRKDVISWTAMIGGLAKSGFG 410

Query: 214 KESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVP----VRDEISW 269
            E+L ++ EM+     G   N  +  S++N       LE  + +   V       D    
Sbjct: 411 AEALTVYQEMQ---QAGVEPNRVTYTSILNACSSPAALEWGRRIHQQVVEAGLATDAHVG 467

Query: 270 TSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVP 329
            ++++ Y   G V +A  +F  M  RD VA+ AMI G   + L  EA  LF  ++  G+ 
Sbjct: 468 NTLVNMYSMCGSVKDARQVFDRMIQRDIVAYNAMIGGYAAHNLGKEALKLFDRLQEEGLK 527

Query: 330 PLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNI 389
           P   T+  +  A   + +++  R+IH ++ K    SD  + N L+S YAKCG   +A  +
Sbjct: 528 PDKVTYINMLNACANSGSLEWAREIHTLVRKGGFFSDTSVGNALVSTYAKCGSFSDASIV 587

Query: 390 FSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLV 449
           F  M  R+++SWN+++ G + HG   + L++FE M   G  P+ VTF+ +LSACSHAGL+
Sbjct: 588 FEKMTKRNVISWNAIIGGSAQHGRGQDALQLFERMKMEGVKPDIVTFVSLLSACSHAGLL 647

Query: 450 SRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLG 509
             G   F +M   + I P  EHY  M++LLGRAG++ EAE  +  +PF+ + RIWGALLG
Sbjct: 648 EEGRRYFCSMSQDFAIIPTIEHYGCMVDLLGRAGQLDEAEALIKTMPFQANTRIWGALLG 707

Query: 510 ACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRK 569
           AC    GN  +AE AA+  L+LD  NA  +V L ++YAA+G      KLR  M  +GV K
Sbjct: 708 ACRI-HGNVPVAERAAESSLKLDLDNAVVYVALSHMYAAAGMWDSAAKLRKLMEQRGVTK 766

Query: 570 VPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
            PG SW+     +  F++ D+   Q  +I
Sbjct: 767 EPGRSWIQVGDKLHYFVAEDRSHPQSEKI 795



 Score =  201 bits (511), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 137/508 (26%), Positives = 253/508 (49%), Gaps = 29/508 (5%)

Query: 23  KRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVV----SWTA 78
           K G +D  + L Q   Q N   Y  ML   ++   L   R++ + + +   V    +  A
Sbjct: 4   KDGAVDVVQYLQQQGAQVNSSDYMKMLKRCIEVKDLVAGRQVHQHIIQHRTVPDQYTVNA 63

Query: 79  MICGLADAGRVCEARKLFEEMP--ERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVI 136
           +I      G + EAR++++++   ER V SWN+MVVG I+ G + +A K+   M    + 
Sbjct: 64  LINMYIQCGSIEEARQVWKKLSYMERTVHSWNAMVVGYIQYGYIEKALKLLRQMQQHGLA 123

Query: 137 SWNAMIAGYVECCMMGEAI-----VLFEEMEER---NVVTWTSMISGYCRAGEVEEGYCL 188
                I  ++  C    A+     + F+ M+     +V     +++ Y + G +EE   +
Sbjct: 124 PDRTTIMSFLSSCKSPGALEWGREIHFQAMQAGLLFDVKVANCILNMYAKCGSIEEAREV 183

Query: 189 FRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGY--- 245
           F +M +K+VVSWT  IGG+A  G  + +  +F +M+     G   N  +  S++N +   
Sbjct: 184 FDKMEKKSVVSWTITIGGYADCGRSETAFEIFQKME---QEGVVPNRITYISVLNAFSSP 240

Query: 246 --IRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAM 303
             +++G+   ++ + +     D    T+++  Y   G   +   +F  + +RD +AW  M
Sbjct: 241 AALKWGKAVHSR-ILNAGHESDTAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTM 299

Query: 304 ISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTES 363
           I GL +   + EA+ ++ +M+  GV P   T+ +L  A   +A +  G++IH  + K   
Sbjct: 300 IGGLAEGGYWEEASEVYNQMQREGVMPNKITYVILLNACVNSAALHWGKEIHSRVAKAGF 359

Query: 364 ESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFES 423
            SD+ ++N LISMY++CG I +A  +F  MV +D++SW +M+ G +  G   E L V++ 
Sbjct: 360 TSDIGVQNALISMYSRCGSIKDARLVFDKMVRKDVISWTAMIGGLAKSGFGAEALTVYQE 419

Query: 424 MLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYV--SMINLLGR 481
           M ++G  PN VT+  IL+ACS    +  G  +      V +     + +V  +++N+   
Sbjct: 420 MQQAGVEPNRVTYTSILNACSSPAALEWGRRIHQ---QVVEAGLATDAHVGNTLVNMYSM 476

Query: 482 AGKIKEAEEFVLRLPFEPDHRIWGALLG 509
            G +K+A +   R+  + D   + A++G
Sbjct: 477 CGSVKDARQVFDRM-IQRDIVAYNAMIG 503


>gi|125537719|gb|EAY84114.1| hypothetical protein OsI_05496 [Oryza sativa Indica Group]
          Length = 751

 Score =  335 bits (859), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 184/589 (31%), Positives = 312/589 (52%), Gaps = 48/589 (8%)

Query: 46  NAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVV 105
           N +L+ + ++GRL+ ARR+F+EMP+ N+ +  A++  LA +  V +  +LF  MPER+ V
Sbjct: 52  NHLLTAYAKSGRLARARRVFDEMPDPNLFTRNALLSALAHSRLVPDMERLFASMPERDAV 111

Query: 106 SWNSMVVGLIRNGELNEARKVFNSM-------PIKNVISWNAMIAG-------------- 144
           S+N+++ G    G    + +++ ++       P +  +S   M+A               
Sbjct: 112 SYNALITGFSSTGSPARSVQLYRALLREESVRPTRITLSAMIMVASALSDRALGHSVHCQ 171

Query: 145 -------------------YVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEG 185
                              Y +  ++ +A  +F+EME + VV + ++I+G  R   +E+ 
Sbjct: 172 VLRLGFGAYAFVGSPLVDMYAKMGLIRDARRVFQEMEAKTVVMYNTLITGLLRCKMIEDA 231

Query: 186 YCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGY 245
             LF+ M  ++ ++WT M+ G   NG   E+L +F  M+     G   +  +  S++   
Sbjct: 232 KGLFQLMVDRDSITWTTMVTGLTQNGLQLEALDVFRRMRA---EGVGIDQYTFGSILTAC 288

Query: 246 IRFGRLEEAQNLFDTVP---VRDEI-SWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWT 301
                 EE + +   +      D +   ++++D Y     +  A  +F  M  R+ ++WT
Sbjct: 289 GALAASEEGKQIHAYITRTWYEDNVFVGSALVDMYSKCRSIRLAEAVFRRMTCRNIISWT 348

Query: 302 AMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKT 361
           AMI G  QN    EA   F EM+  G+ P + T   +  +    A+++ G Q HC+ + +
Sbjct: 349 AMIVGYGQNACSEEAVRAFSEMQMDGIKPDDFTLGSVISSCANLASLEEGAQFHCLALVS 408

Query: 362 ESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVF 421
                + + N L+++Y KCG I++A+ +F  M   D VSW ++V G++  G A ET+ +F
Sbjct: 409 GLMRYITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVTGYAQFGKAKETIDLF 468

Query: 422 ESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGR 481
           E ML +G  P+ VTF+G+LSACS AGLV +G + F++M   + I P  +HY  MI+L  R
Sbjct: 469 EKMLVNGLKPDGVTFIGVLSACSRAGLVEKGCDYFDSMQKDHDIVPIDDHYTCMIDLYSR 528

Query: 482 AGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVV 541
           +G+ KEAEEF+ ++P  PD   W  LL +C    GN EI + AA+ LLE DP N  ++V+
Sbjct: 529 SGRFKEAEEFIKQMPHSPDAFGWATLLSSCRL-RGNMEIGKWAAENLLETDPQNPASYVL 587

Query: 542 LCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDK 590
           LC+++AA G+  E   LR  M  + V+K PGCSW+     + +F + D+
Sbjct: 588 LCSMHAAKGQWTEVAHLRRGMRDRQVKKEPGCSWIKYKNKVHIFSADDQ 636


>gi|297804490|ref|XP_002870129.1| hypothetical protein ARALYDRAFT_329829 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297315965|gb|EFH46388.1| hypothetical protein ARALYDRAFT_329829 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 853

 Score =  335 bits (858), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 183/500 (36%), Positives = 278/500 (55%), Gaps = 27/500 (5%)

Query: 101 ERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYV-ECCMMGEAIVLFE 159
           E  +   N ++   +R+G+++ A  VF+ M  KN +SWN+++ G   +   M EA  LF+
Sbjct: 58  EDQIFPLNKIIATRVRSGDIDGALSVFHGMRAKNTVSWNSLLVGISKDPSRMMEAHQLFD 117

Query: 160 EMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLL 219
           E+ E +  ++  M+S Y R G  E+    F RMP K+  SW  MI G+A  G  +++ +L
Sbjct: 118 EIPEPDTFSYNIMLSCYVRNGNFEKAQSFFNRMPFKDAASWNTMITGYARRGEMEKARVL 177

Query: 220 FIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSV 279
           F  M          N  S N+MI+GYI  G LE+A + F   P R  ++WT+MI GY+  
Sbjct: 178 FYSMM-------EKNEVSWNAMISGYIECGDLEKAAHFFKAAPFRGVVAWTAMITGYMKA 230

Query: 280 GQVSNAYYLFHNMP-DRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVL 338
            +V  A  +F +M   ++ V W AMISG V+N    +   LF  M   G+ P ++  S  
Sbjct: 231 KKVELAEAMFKDMTVKKNLVTWNAMISGYVENSRPEDGLKLFRAMLEEGIRPNSSGLSSA 290

Query: 339 FGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDL 398
                  + + LGRQIH ++M                 Y KCG + +A+ +F  M  +D+
Sbjct: 291 LLGCSELSALCLGRQIHQIVM-----------------YCKCGELGDAWKLFEAMKKKDV 333

Query: 399 VSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNA 458
           V+WN+M+ G++ HG A + L +F  M +S T P+ +TF+ +L AC+HAGLV  G   F++
Sbjct: 334 VAWNAMISGYAQHGNAEKALCLFHEMRDSKTKPDWITFVAVLLACNHAGLVDIGMTYFDS 393

Query: 459 MFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNA 518
           M   Y+++P P+HY  M++LLGRAGK++EA + +  +PF P   ++G LLGAC     N 
Sbjct: 394 MVRDYRVEPRPDHYTCMVDLLGRAGKVEEALKLIRSMPFRPHAAVFGTLLGACR-VHKNV 452

Query: 519 EIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMR 578
           E+AE AA++LLELDP NA  +V L NIYA+     +  ++R  M    V KVPG SW+  
Sbjct: 453 ELAEFAAEKLLELDPRNAAGYVQLANIYASKNLWEDVARVRKRMKESNVVKVPGYSWIEI 512

Query: 579 NGGIQMFLSGDKIPAQVAEI 598
              I  F S D+I  ++  I
Sbjct: 513 RNKIHHFRSSDRIHPELDSI 532



 Score =  186 bits (471), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 119/365 (32%), Positives = 189/365 (51%), Gaps = 30/365 (8%)

Query: 11  VVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQN-GRLSEARRLFEEMP 69
           +  L   I    + G ID A ++F  M  +N VS+N++L G  ++  R+ EA +LF+E+P
Sbjct: 61  IFPLNKIIATRVRSGDIDGALSVFHGMRAKNTVSWNSLLVGISKDPSRMMEAHQLFDEIP 120

Query: 70  ERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNS 129
           E +  S+  M+      G   +A+  F  MP ++  SWN+M+ G  R GE+ +AR +F S
Sbjct: 121 EPDTFSYNIMLSCYVRNGNFEKAQSFFNRMPFKDAASWNTMITGYARRGEMEKARVLFYS 180

Query: 130 MPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLF 189
           M  KN +SWNAMI+GY+EC  + +A   F+    R VV WT+MI+GY +A +VE    +F
Sbjct: 181 MMEKNEVSWNAMISGYIECGDLEKAAHFFKAAPFRGVVAWTAMITGYMKAKKVELAEAMF 240

Query: 190 RRMP-RKNVVSWTAMIGGFAWNGFHKESLLLFIEM--KGICDN--GNNCNVQSCNSM--- 241
           + M  +KN+V+W AMI G+  N   ++ L LF  M  +GI  N  G +  +  C+ +   
Sbjct: 241 KDMTVKKNLVTWNAMISGYVENSRPEDGLKLFRAMLEEGIRPNSSGLSSALLGCSELSAL 300

Query: 242 --------INGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMP 293
                   I  Y + G L +A  LF+ +  +D ++W +MI GY   G    A  LFH M 
Sbjct: 301 CLGRQIHQIVMYCKCGELGDAWKLFEAMKKKDVVAWNAMISGYAQHGNAEKALCLFHEMR 360

Query: 294 DR----DAVAWTAMI-----SGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGA 344
           D     D + + A++     +GLV     +  TY    +R + V P    ++ +    G 
Sbjct: 361 DSKTKPDWITFVAVLLACNHAGLVD----IGMTYFDSMVRDYRVEPRPDHYTCMVDLLGR 416

Query: 345 TANID 349
              ++
Sbjct: 417 AGKVE 421



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 67/238 (28%), Positives = 116/238 (48%), Gaps = 32/238 (13%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMP-ERNVVSW 76
           I+ Y + G +++A   F+  P R VV++ AM++G+++  ++  A  +F++M  ++N+V+W
Sbjct: 193 ISGYIECGDLEKAAHFFKAAPFRGVVAWTAMITGYMKAKKVELAEAMFKDMTVKKNLVTW 252

Query: 77  TAMICGLADAGRVCEARKLFEEMPERNVVSWNS----------------------MVVGL 114
            AMI G  +  R  +  KLF  M E  +   +S                       +V  
Sbjct: 253 NAMISGYVENSRPEDGLKLFRAMLEEGIRPNSSGLSSALLGCSELSALCLGRQIHQIVMY 312

Query: 115 IRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNV----VTWT 170
            + GEL +A K+F +M  K+V++WNAMI+GY +     +A+ LF EM +       +T+ 
Sbjct: 313 CKCGELGDAWKLFEAMKKKDVVAWNAMISGYAQHGNAEKALCLFHEMRDSKTKPDWITFV 372

Query: 171 SMISGYCRAGEVEEGYCLFRRMPRKNVVS-----WTAMIGGFAWNGFHKESLLLFIEM 223
           +++     AG V+ G   F  M R   V      +T M+      G  +E+L L   M
Sbjct: 373 AVLLACNHAGLVDIGMTYFDSMVRDYRVEPRPDHYTCMVDLLGRAGKVEEALKLIRSM 430



 Score = 47.0 bits (110), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 44/171 (25%), Positives = 79/171 (46%), Gaps = 14/171 (8%)

Query: 358 LMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHH-GLANE 416
           L K   E  +   N +I+   + G ID A ++F  M +++ VSWNS+++G S       E
Sbjct: 52  LTKPSDEDQIFPLNKIIATRVRSGDIDGALSVFHGMRAKNTVSWNSLLVGISKDPSRMME 111

Query: 417 TLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMI 476
             ++F+ + E    P++ ++  +LS     G   +    FN M   +K       + +MI
Sbjct: 112 AHQLFDEIPE----PDTFSYNIMLSCYVRNGNFEKAQSFFNRM--PFK---DAASWNTMI 162

Query: 477 NLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCE-GNAEIAEHAAK 526
               R G++++A      +  E +   W A++   G+ E G+ E A H  K
Sbjct: 163 TGYARRGEMEKARVLFYSM-MEKNEVSWNAMIS--GYIECGDLEKAAHFFK 210


>gi|242045336|ref|XP_002460539.1| hypothetical protein SORBIDRAFT_02g030160 [Sorghum bicolor]
 gi|241923916|gb|EER97060.1| hypothetical protein SORBIDRAFT_02g030160 [Sorghum bicolor]
          Length = 630

 Score =  335 bits (858), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 192/591 (32%), Positives = 308/591 (52%), Gaps = 71/591 (12%)

Query: 69  PERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFN 128
           P   +V+ T+ I  L  AG    AR +F+ MP R+ V+WN+M+    R G+  +A  +F+
Sbjct: 7   PFAGLVAATSRIASLGRAGDAASARAVFDAMPRRDAVAWNAMLTAYARAGQPRDALALFS 66

Query: 129 SMPIKNVISW-----------------------------------NAMIAGYVECCMMGE 153
             P  +  S                                    N++I+ Y +C    +
Sbjct: 67  RAPAPDAFSLTAALSAAAALRSPTAGAQLHARLLRVGLRALLPVGNSLISMYAKCARAED 126

Query: 154 AIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFH 213
           A   F EM ERN ++W S++  Y  + ++     LF  MP +N V+W  ++ G++ +G  
Sbjct: 127 AARAFGEMRERNALSWCSLLDAYVASDDLRLAQELFDEMPNRNNVAWNTLLMGYSRSGNA 186

Query: 214 KESLLLF--IEMKGI-CDNGNNCN-VQSC----------------------------NSM 241
              LLLF  + M G+ CD+   C  V +C                            NS+
Sbjct: 187 NHCLLLFNKMRMAGLTCDDATLCILVDACTELANPSAGSAIHKIVVQSGWNAMAEVSNSL 246

Query: 242 INGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWT 301
           I+ Y +F  L++A  +F+++ V+  +SW S+ID Y+ +G V  A  LF ++P+ + ++WT
Sbjct: 247 ISLYTKFSLLDDAVRIFESMEVQTIVSWNSLIDAYMKLGCVEKATSLFGSVPETNVISWT 306

Query: 302 AMISGLVQNELFVEATYLFMEMRAH-GVPPLNATFSVLFGAAGATANIDLGRQIHCVLMK 360
           AMI GL +N L  EA  LF+EM AH  + P + TF  +  A    A++  GR +HC + +
Sbjct: 307 AMIGGLARNGLADEALILFVEMLAHEHIHPDDFTFGAVLHACATAASLASGRMVHCRVFQ 366

Query: 361 TESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKV 420
           +   S L + N LI MYAKCG ++   N+FS +V++DLVSWN+M+ GF+ +GL NE L V
Sbjct: 367 SGFVSYLYVANSLIDMYAKCGDLEGGTNVFSTIVNKDLVSWNTMLFGFAINGLPNEALVV 426

Query: 421 FESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLG 480
           ++SM      P+ VTF G+L+ACSH+GL+  G   F  M  V+ IQP PEH   ++++  
Sbjct: 427 YDSMKSHDVCPDEVTFTGLLTACSHSGLLEHGKTFFELMVSVHGIQPKPEHLSCILDMYA 486

Query: 481 RAGKIKEAEEFVLR---LPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAP 537
           R+G I +A E + R   +    +  I  ALL AC     N  +A  A K ++        
Sbjct: 487 RSGNITKAMEMLDRYSEMIQTHNSDIREALLSACSLEHLNFSVARKAVKDMVATKSAGDV 546

Query: 538 AHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSG 588
            +V+L N++ A+G+  +  ++R+ M   G++K PGCSW+   G +++F+SG
Sbjct: 547 GYVMLSNLFCATGQWNQAERVRIAMAEYGIKKSPGCSWIEVQGAVKVFVSG 597


>gi|328774757|gb|AEB39778.1| pentatricopeptide repeat protein 77 [Funaria hygrometrica]
          Length = 1161

 Score =  334 bits (856), Expect = 9e-89,   Method: Compositional matrix adjust.
 Identities = 196/649 (30%), Positives = 346/649 (53%), Gaps = 56/649 (8%)

Query: 1    MSERNHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSE 60
            +SE  H   + +   S I+ Y++ G +  A+ LF  MP+R+++S+NA+++G+ +     E
Sbjct: 411  ISEVGHSSDVQIG-NSLISMYARCGDLPRARELFNTMPKRDLISWNAIIAGYARREDRGE 469

Query: 61   ARRLFEEMPERNV----VSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLI- 115
            A +L+++M    V    V++  ++    ++    + + + E++    + S   +   L+ 
Sbjct: 470  AMKLYKQMQSEGVKPGRVTFLHLLSACTNSSAYSDGKMIHEDILRSGIKSNGHLANALMN 529

Query: 116  ---RNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEME----ERNVVT 168
               R G + EA+ VF     +++ISWN+MIAG+ +      A  LF EM+    E + +T
Sbjct: 530  MYRRCGSIMEAQNVFEGTRARDIISWNSMIAGHAQHGSYEAAYKLFLEMKKEGLEPDKIT 589

Query: 169  WTSMISG-----------------------------------YCRAGEVEEGYCLFRRMP 193
            + S++ G                                   Y R G +++ Y +F  + 
Sbjct: 590  FASVLVGCKNPEALELGRQIHMLIIESGLQLDVNLGNALINMYIRCGSLQDAYEVFHSLR 649

Query: 194  RKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEE 253
             +NV+SWTAMIGGFA  G  +++  LF +M+   ++G      + +S++   +    L+E
Sbjct: 650  HRNVMSWTAMIGGFADQGEDRKAFELFWQMQ---NDGFKPVKSTFSSILKACMSSACLDE 706

Query: 254  AQ----NLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQ 309
             +    ++ ++    D     ++I  Y   G +++A  +F  MP+RD ++W  MI+G  Q
Sbjct: 707  GKKVIAHILNSGYELDTGVGNALISAYSKSGSMTDARKVFDKMPNRDIMSWNKMIAGYAQ 766

Query: 310  NELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLIL 369
            N L   A     +M+  GV     +F  +  A  + + ++ G+++H  ++K + + D+ +
Sbjct: 767  NGLGGTALQFAYQMQEQGVVLNKFSFVSILNACSSFSALEEGKRVHAEIVKRKMQGDVRV 826

Query: 370  ENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGT 429
               LISMYAKCG ++ A  +F N   +++V+WN+M+  ++ HGLA++ L  F  M + G 
Sbjct: 827  GAALISMYAKCGSLEEAQEVFDNFTEKNVVTWNAMINAYAQHGLASKALDFFNCMDKEGI 886

Query: 430  HPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAE 489
             P+  TF  ILSAC+H+GLV  G  +F+++   + + P  EHY  ++ LLGRAG+ +EAE
Sbjct: 887  KPDGSTFTSILSACNHSGLVMEGNRIFSSLESQHGLSPTIEHYGCLVGLLGRAGRFQEAE 946

Query: 490  EFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAAS 549
              + ++PF PD  +W  LLGAC    GN  +AEHAA   L+L+  N   +V+L N+YAA+
Sbjct: 947  TLINQMPFPPDAAVWETLLGACRI-HGNVALAEHAANNALKLNARNPAVYVLLSNVYAAA 1005

Query: 550  GRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
            GR  +  K+R  M  +G+RK PG SW+  +  I  F++ D+   + AEI
Sbjct: 1006 GRWDDVAKIRRVMEGRGIRKEPGRSWIEVDNIIHEFIAADRSHPETAEI 1054



 Score =  175 bits (444), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 143/554 (25%), Positives = 253/554 (45%), Gaps = 68/554 (12%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEM------PER 71
           I  Y K   + +A  +F  MP+R+V+S+N+++S + Q G   +A +LFEEM      P +
Sbjct: 124 INMYVKCRSVSDAHQVFLKMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQTAGFIPSK 183

Query: 72  -NVVSWTAMICGLADA--GRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFN 128
              +S     C  A+   G+   + K+ E   +R+    NS++    +  +L  AR+VF+
Sbjct: 184 ITYISILTACCSPAELEYGKKIHS-KIIEAGYQRDPRVQNSLLNMYGKCEDLPSARQVFS 242

Query: 129 SMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNV----VTW--------------- 169
            +  ++V+S+N M+  Y +   + E I LF +M    +    VT+               
Sbjct: 243 GIYRRDVVSYNTMLGLYAQKAYVEECIGLFGQMSSEGIPPDKVTYINLLDAFTTPSMLDE 302

Query: 170 --------------------TSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAW 209
                               T++ + + R G+V            ++VV + A+I   A 
Sbjct: 303 GKRIHKLAVNEGLNSDIRVGTALATMFVRCGDVAGAKQALEAFADRDVVVYNALIAALAQ 362

Query: 210 NGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEIS- 268
           +G ++E+   + +M+      N     S  +  +     G  E   +    V    ++  
Sbjct: 363 HGHYEEAFEQYYQMRSDGVVMNRTTYLSVLNACSTSKALGAGELIHSHISEVGHSSDVQI 422

Query: 269 WTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGV 328
             S+I  Y   G +  A  LF+ MP RD ++W A+I+G  + E   EA  L+ +M++ GV
Sbjct: 423 GNSLISMYARCGDLPRARELFNTMPKRDLISWNAIIAGYARREDRGEAMKLYKQMQSEGV 482

Query: 329 PPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYN 388
            P   TF  L  A   ++    G+ IH  ++++  +S+  L N L++MY +CG I  A N
Sbjct: 483 KPGRVTFLHLLSACTNSSAYSDGKMIHEDILRSGIKSNGHLANALMNMYRRCGSIMEAQN 542

Query: 389 IFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGL 448
           +F    +RD++SWNSM+ G + HG      K+F  M + G  P+ +TF  +L  C +   
Sbjct: 543 VFEGTRARDIISWNSMIAGHAQHGSYEAAYKLFLEMKKEGLEPDKITFASVLVGCKNPEA 602

Query: 449 VSRGWELFNAMFDVYKIQPGPEHYV----SMINLLGRAGKIKEAEEFVLRLPFEPDHR-- 502
           +  G ++   +     I+ G +  V    ++IN+  R G +++A E    L     HR  
Sbjct: 603 LELGRQIHMLI-----IESGLQLDVNLGNALINMYIRCGSLQDAYEVFHSL----RHRNV 653

Query: 503 -IWGALLGACGFCE 515
             W A++G  GF +
Sbjct: 654 MSWTAMIG--GFAD 665



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 125/501 (24%), Positives = 236/501 (47%), Gaps = 60/501 (11%)

Query: 41  NVVSYNAMLSGFLQNGRLSEARRLFEEMP-ERNVVSWTAMICGLADAGRVCEARKLFEEM 99
           N+VS   M     +     +    ++  P E N  ++  ++        + EA+++  +M
Sbjct: 49  NLVSVKVMRDEQHRGSEREDLSNAYQPRPTETNRAAYVDLVQNCTRKRSLAEAKRIHAQM 108

Query: 100 PERNV---VSWNSMVVGL-IRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAI 155
            E  V   +  +++++ + ++   +++A +VF  MP ++VISWN++I+ Y +     +A 
Sbjct: 109 VEAGVGPDIFLSNLLINMYVKCRSVSDAHQVFLKMPRRDVISWNSLISCYAQQGFKKKAF 168

Query: 156 VLFEEMEER----NVVTWTSMISGYCRAGEVEEGYCL--------FRRMP---------- 193
            LFEEM+      + +T+ S+++  C   E+E G  +        ++R P          
Sbjct: 169 QLFEEMQTAGFIPSKITYISILTACCSPAELEYGKKIHSKIIEAGYQRDPRVQNSLLNMY 228

Query: 194 -----------------RKNVVSWTAMIGGFAWNGFHKESLLLFIEM--KGICDNG---- 230
                            R++VVS+  M+G +A   + +E + LF +M  +GI  +     
Sbjct: 229 GKCEDLPSARQVFSGIYRRDVVSYNTMLGLYAQKAYVEECIGLFGQMSSEGIPPDKVTYI 288

Query: 231 NNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFH 290
           N  +  +  SM++   R  +L   + L   + V      T++   ++  G V+ A     
Sbjct: 289 NLLDAFTTPSMLDEGKRIHKLAVNEGLNSDIRV-----GTALATMFVRCGDVAGAKQALE 343

Query: 291 NMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDL 350
              DRD V + A+I+ L Q+  + EA   + +MR+ GV     T+  +  A   +  +  
Sbjct: 344 AFADRDVVVYNALIAALAQHGHYEEAFEQYYQMRSDGVVMNRTTYLSVLNACSTSKALGA 403

Query: 351 GRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSH 410
           G  IH  + +    SD+ + N LISMYA+CG +  A  +F+ M  RDL+SWN+++ G++ 
Sbjct: 404 GELIHSHISEVGHSSDVQIGNSLISMYARCGDLPRARELFNTMPKRDLISWNAIIAGYAR 463

Query: 411 HGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYK--IQPG 468
                E +K+++ M   G  P  VTFL +LSAC+++   S G  +     D+ +  I+  
Sbjct: 464 REDRGEAMKLYKQMQSEGVKPGRVTFLHLLSACTNSSAYSDGKMIHE---DILRSGIKSN 520

Query: 469 PEHYVSMINLLGRAGKIKEAE 489
                +++N+  R G I EA+
Sbjct: 521 GHLANALMNMYRRCGSIMEAQ 541



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 87/355 (24%), Positives = 162/355 (45%), Gaps = 15/355 (4%)

Query: 172 MISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGN 231
           +I+ Y +   V + + +F +MPR++V+SW ++I  +A  GF K++  LF EM+     G 
Sbjct: 123 LINMYVKCRSVSDAHQVFLKMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQTA---GF 179

Query: 232 NCNVQSCNSMINGYIRFGRLEEAQNLFDTV----PVRDEISWTSMIDGYLSVGQVSNAYY 287
             +  +  S++        LE  + +   +      RD     S+++ Y     + +A  
Sbjct: 180 IPSKITYISILTACCSPAELEYGKKIHSKIIEAGYQRDPRVQNSLLNMYGKCEDLPSARQ 239

Query: 288 LFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATAN 347
           +F  +  RD V++  M+    Q     E   LF +M + G+PP   T+  L  A    + 
Sbjct: 240 VFSGIYRRDVVSYNTMLGLYAQKAYVEECIGLFGQMSSEGIPPDKVTYINLLDAFTTPSM 299

Query: 348 IDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMG 407
           +D G++IH + +     SD+ +   L +M+ +CG +  A         RD+V +N+++  
Sbjct: 300 LDEGKRIHKLAVNEGLNSDIRVGTALATMFVRCGDVAGAKQALEAFADRDVVVYNALIAA 359

Query: 408 FSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDV---YK 464
            + HG   E  + +  M   G   N  T+L +L+ACS +  +  G  + + + +V     
Sbjct: 360 LAQHGHYEEAFEQYYQMRSDGVVMNRTTYLSVLNACSTSKALGAGELIHSHISEVGHSSD 419

Query: 465 IQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAE 519
           +Q G     S+I++  R G +  A E    +P + D   W A++      E   E
Sbjct: 420 VQIGN----SLISMYARCGDLPRARELFNTMP-KRDLISWNAIIAGYARREDRGE 469



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 38/140 (27%), Positives = 76/140 (54%), Gaps = 1/140 (0%)

Query: 351 GRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSH 410
            ++IH  +++     D+ L N LI+MY KC  + +A+ +F  M  RD++SWNS++  ++ 
Sbjct: 101 AKRIHAQMVEAGVGPDIFLSNLLINMYVKCRSVSDAHQVFLKMPRRDVISWNSLISCYAQ 160

Query: 411 HGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPE 470
            G   +  ++FE M  +G  P+ +T++ IL+AC     +  G ++ + + +    Q  P 
Sbjct: 161 QGFKKKAFQLFEEMQTAGFIPSKITYISILTACCSPAELEYGKKIHSKIIEA-GYQRDPR 219

Query: 471 HYVSMINLLGRAGKIKEAEE 490
              S++N+ G+   +  A +
Sbjct: 220 VQNSLLNMYGKCEDLPSARQ 239


>gi|34393605|dbj|BAC83258.1| pentatricopeptide (PPR) repeat-containing protein-like protein
           [Oryza sativa Japonica Group]
 gi|50509373|dbj|BAD30928.1| pentatricopeptide (PPR) repeat-containing protein-like protein
           [Oryza sativa Japonica Group]
          Length = 808

 Score =  334 bits (856), Expect = 9e-89,   Method: Compositional matrix adjust.
 Identities = 196/620 (31%), Positives = 334/620 (53%), Gaps = 30/620 (4%)

Query: 4   RNHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMP--QRNVVSYNAMLSGFLQNGRLSEA 61
           R+ P    V  TS +  ++  G + +A A F  +P  +R+ V +NAM+S F +    + A
Sbjct: 87  RSDPDPGPVAATSLVAAHAAAGRLRDAAAFFDAVPPARRDTVLHNAMMSAFARASLAAPA 146

Query: 62  RRLFEEMP-----ERNVVSWTAMICGLAD-----AGRVCEARKLFEEMPERNVVSWNSMV 111
             +F  +        +  S+TA+I  +       A    +      +     V+S ++ +
Sbjct: 147 VSVFHALLGSGSLRPDDYSFTALISAVGQMHNLAAPHCTQLHCSVLKSGAAAVLSVSNAL 206

Query: 112 VGLIRNGELNEA----RKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVV 167
           + L    +  EA    RKV + MP K+ ++W  M+ GYV    +  A  +FEE++ +  V
Sbjct: 207 IALYMKCDTPEASWDARKVLDEMPDKDDLTWTTMVVGYVRRGDVNAARSVFEEVDGKFDV 266

Query: 168 TWTSMISGYCRAGEVEEGYCLFRRMPRKNV----VSWTAMIGGFAWNGF--HKESL---L 218
            W +MISGY ++G   + + LFRRM  + V     ++T+++   A  GF  H +S+   +
Sbjct: 267 VWNAMISGYVQSGMCADAFELFRRMVSEKVPLDEFTFTSVLSACANAGFFVHGKSVHGQI 326

Query: 219 LFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLS 278
           + ++   + +     N    N+++  Y + G++  A+ +FDT+ ++D +SW +++ GY+ 
Sbjct: 327 IRLQPNFVPEAALPVN----NALVTLYSKGGKIVIAKRIFDTMNLKDVVSWNTILSGYID 382

Query: 279 VGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVL 338
            G +  A  +F  MP ++ ++W  M+SG V   L  +A  LF +MRA  V P + T++  
Sbjct: 383 SGCLDKAVEVFKVMPYKNDLSWMVMVSGYVHGGLSEDALKLFNQMRAEDVKPCDYTYAGA 442

Query: 339 FGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDL 398
             A G    +  GRQ+H  L++   E+     N L++MYAKCG +++A  +F  M + D 
Sbjct: 443 IAACGELGALKHGRQLHAHLVQCGFEASNSAGNALLTMYAKCGAVNDARLVFLVMPNLDS 502

Query: 399 VSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNA 458
           VSWN+M+     HG   E L++F+ M+  G  P+ ++FL IL+AC+HAGLV  G+  F +
Sbjct: 503 VSWNAMISALGQHGHGREALELFDQMVAEGIDPDRISFLTILTACNHAGLVDEGFHYFES 562

Query: 459 MFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNA 518
           M   + I PG +HY  +I+LLGR+G+I EA + +  +PFEP   IW A+L  C    G+ 
Sbjct: 563 MKRDFGISPGEDHYARLIDLLGRSGRIGEARDLIKTMPFEPTPSIWEAILSGCR-TNGDM 621

Query: 519 EIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMR 578
           E   +AA +L  + P +   +++L N Y+A+GR V+  ++R  M  +GV+K PGCSW+  
Sbjct: 622 EFGAYAADQLFRMIPQHDGTYILLSNTYSAAGRWVDAARVRKLMRDRGVKKEPGCSWIEV 681

Query: 579 NGGIQMFLSGDKIPAQVAEI 598
              I +FL GD    +  E+
Sbjct: 682 GSKIHVFLVGDTKHPEAQEV 701


>gi|78183583|dbj|BAD67156.2| PpPPR_77 [Physcomitrella patens]
          Length = 1106

 Score =  333 bits (855), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 199/649 (30%), Positives = 345/649 (53%), Gaps = 56/649 (8%)

Query: 1   MSERNHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSE 60
           +SE  H   + +   + I+ Y++ G + +A+ LF  MP+R+++S+NA+++G+ +     E
Sbjct: 356 ISEDGHSSDVQIG-NALISMYARCGDLPKARELFYTMPKRDLISWNAIIAGYARREDRGE 414

Query: 61  ARRLFEEMPERNV----VSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLI- 115
           A RL+++M    V    V++  ++   A++    + + + E++    + S   +   L+ 
Sbjct: 415 AMRLYKQMQSEGVKPGRVTFLHLLSACANSSAYADGKMIHEDILRSGIKSNGHLANALMN 474

Query: 116 ---RNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEME----ERNVVT 168
              R G L EA+ VF     ++VISWN+MIAG+ +      A  LF+EM+    E + +T
Sbjct: 475 MYRRCGSLMEAQNVFEGTQARDVISWNSMIAGHAQHGSYETAYKLFQEMQNEELEPDNIT 534

Query: 169 WTSMISG-----------------------------------YCRAGEVEEGYCLFRRMP 193
           + S++SG                                   Y R G +++   +F  + 
Sbjct: 535 FASVLSGCKNPEALELGKQIHGRITESGLQLDVNLGNALINMYIRCGSLQDARNVFHSLQ 594

Query: 194 RKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEE 253
            ++V+SWTAMIGG A  G   +++ LF +M+   + G      + +S++        L+E
Sbjct: 595 HRDVMSWTAMIGGCADQGEDMKAIELFWQMQ---NEGFRPVKSTFSSILKVCTSSACLDE 651

Query: 254 AQN----LFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQ 309
            +     + ++    D     ++I  Y   G +++A  +F  MP RD V+W  +I+G  Q
Sbjct: 652 GKKVIAYILNSGYELDTGVGNALISAYSKSGSMTDAREVFDKMPSRDIVSWNKIIAGYAQ 711

Query: 310 NELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLIL 369
           N L   A     +M+   V P   +F  L  A  + + ++ G+++H  ++K + + D+ +
Sbjct: 712 NGLGQTAVEFAYQMQEQDVVPNKFSFVSLLNACSSFSALEEGKRVHAEIVKRKLQGDVRV 771

Query: 370 ENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGT 429
              LISMYAKCG    A  +F N++ +++V+WN+M+  ++ HGLA++ L  F  M + G 
Sbjct: 772 GAALISMYAKCGSQGEAQEVFDNIIEKNVVTWNAMINAYAQHGLASKALGFFNCMEKEGI 831

Query: 430 HPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAE 489
            P+  TF  ILSAC+HAGLV  G+++F++M   Y + P  EHY  ++ LLGRA + +EAE
Sbjct: 832 KPDGSTFTSILSACNHAGLVLEGYQIFSSMESEYGVLPTIEHYGCLVGLLGRARRFQEAE 891

Query: 490 EFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAAS 549
             + ++PF PD  +W  LLGAC    GN  +AEHAA   L+L+  N   +++L N+YAA+
Sbjct: 892 TLINQMPFPPDAAVWETLLGACRI-HGNIALAEHAANNALKLNARNPAVYILLSNVYAAA 950

Query: 550 GRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
           GR  +  K+R  M  +G+RK PG SW+  +  I  F++ D+   + AEI
Sbjct: 951 GRWDDVAKIRRVMEGRGIRKEPGRSWIEVDNIIHEFIAADRSHPETAEI 999



 Score =  188 bits (477), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 133/546 (24%), Positives = 253/546 (46%), Gaps = 56/546 (10%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPER----NV 73
           I  Y K   + +A  +F+ MP+R+V+S+N+++S + Q G   +A +LFEEM       N 
Sbjct: 69  INMYVKCRSVLDAHQVFKEMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAGFIPNK 128

Query: 74  VSWTAMICGLADAGRVCEARKLFEEMP----ERNVVSWNSMVVGLIRNGELNEARKVFNS 129
           +++ +++        +   +K+  ++     +R+    NS++    + G+L  AR+VF  
Sbjct: 129 ITYISILTACYSPAELENGKKIHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVFAG 188

Query: 130 MPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNV----VTWTSMISGYC-------- 177
           +  ++V+S+N M+  Y +   + E + LF +M    +    VT+ +++  +         
Sbjct: 189 ISPRDVVSYNTMLGLYAQKAYVKECLGLFGQMSSEGISPDKVTYINLLDAFTTPSMLDEG 248

Query: 178 ---------------------------RAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWN 210
                                      R G+V+     F+    ++VV + A+I   A +
Sbjct: 249 KRIHKLTVEEGLNSDIRVGTALVTMCVRCGDVDSAKQAFKGTADRDVVVYNALIAALAQH 308

Query: 211 GFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEIS-- 268
           G + E+   +  M+    +G   N  +  S++N       LE  + +   +      S  
Sbjct: 309 GHNVEAFEQYYRMRS---DGVALNRTTYLSILNACSTSKALEAGKLIHSHISEDGHSSDV 365

Query: 269 --WTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAH 326
               ++I  Y   G +  A  LF+ MP RD ++W A+I+G  + E   EA  L+ +M++ 
Sbjct: 366 QIGNALISMYARCGDLPKARELFYTMPKRDLISWNAIIAGYARREDRGEAMRLYKQMQSE 425

Query: 327 GVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNA 386
           GV P   TF  L  A   ++    G+ IH  ++++  +S+  L N L++MY +CG +  A
Sbjct: 426 GVKPGRVTFLHLLSACANSSAYADGKMIHEDILRSGIKSNGHLANALMNMYRRCGSLMEA 485

Query: 387 YNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHA 446
            N+F    +RD++SWNSM+ G + HG      K+F+ M      P+++TF  +LS C + 
Sbjct: 486 QNVFEGTQARDVISWNSMIAGHAQHGSYETAYKLFQEMQNEELEPDNITFASVLSGCKNP 545

Query: 447 GLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGA 506
             +  G ++   + +   +Q       ++IN+  R G +++A      L    D   W A
Sbjct: 546 EALELGKQIHGRITES-GLQLDVNLGNALINMYIRCGSLQDARNVFHSLQHR-DVMSWTA 603

Query: 507 LLGACG 512
           ++G C 
Sbjct: 604 MIGGCA 609



 Score =  133 bits (335), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 89/355 (25%), Positives = 165/355 (46%), Gaps = 15/355 (4%)

Query: 172 MISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGN 231
           +I+ Y +   V + + +F+ MPR++V+SW ++I  +A  GF K++  LF EM+   + G 
Sbjct: 68  LINMYVKCRSVLDAHQVFKEMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQ---NAGF 124

Query: 232 NCNVQSCNSMINGYIRFGRLEEAQNLFDTV----PVRDEISWTSMIDGYLSVGQVSNAYY 287
             N  +  S++        LE  + +   +      RD     S++  Y   G +  A  
Sbjct: 125 IPNKITYISILTACYSPAELENGKKIHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQ 184

Query: 288 LFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATAN 347
           +F  +  RD V++  M+    Q     E   LF +M + G+ P   T+  L  A    + 
Sbjct: 185 VFAGISPRDVVSYNTMLGLYAQKAYVKECLGLFGQMSSEGISPDKVTYINLLDAFTTPSM 244

Query: 348 IDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMG 407
           +D G++IH + ++    SD+ +   L++M  +CG +D+A   F     RD+V +N+++  
Sbjct: 245 LDEGKRIHKLTVEEGLNSDIRVGTALVTMCVRCGDVDSAKQAFKGTADRDVVVYNALIAA 304

Query: 408 FSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFD---VYK 464
            + HG   E  + +  M   G   N  T+L IL+ACS +  +  G  + + + +      
Sbjct: 305 LAQHGHNVEAFEQYYRMRSDGVALNRTTYLSILNACSTSKALEAGKLIHSHISEDGHSSD 364

Query: 465 IQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAE 519
           +Q G     ++I++  R G + +A E    +P + D   W A++      E   E
Sbjct: 365 VQIGN----ALISMYARCGDLPKARELFYTMP-KRDLISWNAIIAGYARREDRGE 414



 Score =  111 bits (278), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 71/281 (25%), Positives = 135/281 (48%), Gaps = 8/281 (2%)

Query: 272 MIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPL 331
           +I+ Y+    V +A+ +F  MP RD ++W ++IS   Q     +A  LF EM+  G  P 
Sbjct: 68  LINMYVKCRSVLDAHQVFKEMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAGFIPN 127

Query: 332 NATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFS 391
             T+  +  A  + A ++ G++IH  ++K   + D  ++N L+SMY KCG +  A  +F+
Sbjct: 128 KITYISILTACYSPAELENGKKIHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVFA 187

Query: 392 NMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSR 451
            +  RD+VS+N+M+  ++      E L +F  M   G  P+ VT++ +L A +   ++  
Sbjct: 188 GISPRDVVSYNTMLGLYAQKAYVKECLGLFGQMSSEGISPDKVTYINLLDAFTTPSMLDE 247

Query: 452 GWELFNAMFDV---YKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALL 508
           G  +     +      I+ G     +++ +  R G +  A++   +   + D  ++ AL+
Sbjct: 248 GKRIHKLTVEEGLNSDIRVG----TALVTMCVRCGDVDSAKQ-AFKGTADRDVVVYNALI 302

Query: 509 GACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAAS 549
            A      N E  E   +   +   LN   ++ + N  + S
Sbjct: 303 AALAQHGHNVEAFEQYYRMRSDGVALNRTTYLSILNACSTS 343



 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 39/140 (27%), Positives = 76/140 (54%), Gaps = 1/140 (0%)

Query: 351 GRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSH 410
            ++IH  +++     D+ L N LI+MY KC  + +A+ +F  M  RD++SWNS++  ++ 
Sbjct: 46  AKRIHAQMVEAWVGPDIFLSNLLINMYVKCRSVLDAHQVFKEMPRRDVISWNSLISCYAQ 105

Query: 411 HGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPE 470
            G   +  ++FE M  +G  PN +T++ IL+AC     +  G ++ + +      Q  P 
Sbjct: 106 QGFKKKAFQLFEEMQNAGFIPNKITYISILTACYSPAELENGKKIHSQIIKA-GYQRDPR 164

Query: 471 HYVSMINLLGRAGKIKEAEE 490
              S++++ G+ G +  A +
Sbjct: 165 VQNSLLSMYGKCGDLPRARQ 184


>gi|356507248|ref|XP_003522381.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like [Glycine max]
          Length = 635

 Score =  333 bits (855), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 191/554 (34%), Positives = 290/554 (52%), Gaps = 44/554 (7%)

Query: 48  MLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSW 107
           + S F+   +   +     E    NV++   +I      G +  A ++FE+M  ++ V+W
Sbjct: 16  LTSSFVTLSKYVSSHTHQHEFNNNNVIASNKLIASYVRCGDIDSAVRVFEDMKVKSTVTW 75

Query: 108 NSMVVGLIRN-GELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNV 166
           NS++    +  G    AR++F  +P  N +S+N M+A +     + +A   F+ M  ++V
Sbjct: 76  NSILAAFAKKPGHFEYARQLFEKIPQPNTVSYNIMLACHWHHLGVHDARGFFDSMPLKDV 135

Query: 167 VTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGI 226
            +W +MIS   + G + E   LF  MP KN VSW+AM+                      
Sbjct: 136 ASWNTMISALAQVGLMGEARRLFSAMPEKNCVSWSAMV---------------------- 173

Query: 227 CDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAY 286
                           +GY+  G L+ A   F   P+R  I+WT+MI GY+  G+V  A 
Sbjct: 174 ----------------SGYVACGDLDAAVECFYAAPMRSVITWTAMITGYMKFGRVELAE 217

Query: 287 YLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPP--LNATFSVLFGAAGA 344
            LF  M  R  V W AMI+G V+N    +   LF  M   GV P  L+ T SVL G +  
Sbjct: 218 RLFQEMSMRTLVTWNAMIAGYVENGRAEDGLRLFRTMLETGVKPNALSLT-SVLLGCSNL 276

Query: 345 TANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSM 404
           +A + LG+Q+H ++ K    SD      L+SMY+KCG + +A+ +F  +  +D+V WN+M
Sbjct: 277 SA-LQLGKQVHQLVCKCPLSSDTTAGTSLVSMYSKCGDLKDAWELFIQIPRKDVVCWNAM 335

Query: 405 VMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYK 464
           + G++ HG   + L++F+ M + G  P+ +TF+ +L AC+HAGLV  G + FN M   + 
Sbjct: 336 ISGYAQHGAGKKALRLFDEMKKEGLKPDWITFVAVLLACNHAGLVDLGVQYFNTMRRDFG 395

Query: 465 IQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHA 524
           I+  PEHY  M++LLGRAGK+ EA + +  +PF+P   I+G LLGAC     N  +AE A
Sbjct: 396 IETKPEHYACMVDLLGRAGKLSEAVDLIKSMPFKPHPAIYGTLLGACRI-HKNLNLAEFA 454

Query: 525 AKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQM 584
           AK LLELDP  A  +V L N+YAA  R      +R  M    V K+PG SW+  N  +  
Sbjct: 455 AKNLLELDPTIATGYVQLANVYAAQNRWDHVASIRRSMKDNNVVKIPGYSWIEINSVVHG 514

Query: 585 FLSGDKIPAQVAEI 598
           F S D++  ++A I
Sbjct: 515 FRSSDRLHPELASI 528



 Score =  190 bits (482), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 115/390 (29%), Positives = 198/390 (50%), Gaps = 40/390 (10%)

Query: 41  NVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADA-GRVCEARKLFEEM 99
           NV++ N +++ +++ G +  A R+FE+M  ++ V+W +++   A   G    AR+LFE++
Sbjct: 40  NVIASNKLIASYVRCGDIDSAVRVFEDMKVKSTVTWNSILAAFAKKPGHFEYARQLFEKI 99

Query: 100 PE-------------------------------RNVVSWNSMVVGLIRNGELNEARKVFN 128
           P+                               ++V SWN+M+  L + G + EAR++F+
Sbjct: 100 PQPNTVSYNIMLACHWHHLGVHDARGFFDSMPLKDVASWNTMISALAQVGLMGEARRLFS 159

Query: 129 SMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCL 188
           +MP KN +SW+AM++GYV C  +  A+  F     R+V+TWT+MI+GY + G VE    L
Sbjct: 160 AMPEKNCVSWSAMVSGYVACGDLDAAVECFYAAPMRSVITWTAMITGYMKFGRVELAERL 219

Query: 189 FRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRF 248
           F+ M  + +V+W AMI G+  NG  ++ L LF   + + + G   N  S  S++ G    
Sbjct: 220 FQEMSMRTLVTWNAMIAGYVENGRAEDGLRLF---RTMLETGVKPNALSLTSVLLGCSNL 276

Query: 249 GRLEEAQNLFDTV---PV-RDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMI 304
             L+  + +   V   P+  D  + TS++  Y   G + +A+ LF  +P +D V W AMI
Sbjct: 277 SALQLGKQVHQLVCKCPLSSDTTAGTSLVSMYSKCGDLKDAWELFIQIPRKDVVCWNAMI 336

Query: 305 SGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTES- 363
           SG  Q+    +A  LF EM+  G+ P   TF  +  A      +DLG Q    + +    
Sbjct: 337 SGYAQHGAGKKALRLFDEMKKEGLKPDWITFVAVLLACNHAGLVDLGVQYFNTMRRDFGI 396

Query: 364 ESDLILENCLISMYAKCGVIDNAYNIFSNM 393
           E+      C++ +  + G +  A ++  +M
Sbjct: 397 ETKPEHYACMVDLLGRAGKLSEAVDLIKSM 426



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 81/230 (35%), Positives = 134/230 (58%), Gaps = 16/230 (6%)

Query: 7   PKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFE 66
           P   V    + I+  ++ G + EA+ LF  MP++N VS++AM+SG++  G L  A   F 
Sbjct: 131 PLKDVASWNTMISALAQVGLMGEARRLFSAMPEKNCVSWSAMVSGYVACGDLDAAVECFY 190

Query: 67  EMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKV 126
             P R+V++WTAMI G    GRV  A +LF+EM  R +V+WN+M+ G + NG   +  ++
Sbjct: 191 AAPMRSVITWTAMITGYMKFGRVELAERLFQEMSMRTLVTWNAMIAGYVENGRAEDGLRL 250

Query: 127 FNSM---PIK-NVISWNAMIAGYVECCMMGEAIVLFEEMEE--------RNVVTWTSMIS 174
           F +M    +K N +S  +++ G    C    A+ L +++ +         +    TS++S
Sbjct: 251 FRTMLETGVKPNALSLTSVLLG----CSNLSALQLGKQVHQLVCKCPLSSDTTAGTSLVS 306

Query: 175 GYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMK 224
            Y + G++++ + LF ++PRK+VV W AMI G+A +G  K++L LF EMK
Sbjct: 307 MYSKCGDLKDAWELFIQIPRKDVVCWNAMISGYAQHGAGKKALRLFDEMK 356



 Score = 66.2 bits (160), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 58/211 (27%), Positives = 98/211 (46%), Gaps = 23/211 (10%)

Query: 15  TSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNV- 73
           TS ++ YSK G + +A  LF  +P+++VV +NAM+SG+ Q+G   +A RLF+EM +  + 
Sbjct: 302 TSLVSMYSKCGDLKDAWELFIQIPRKDVVCWNAMISGYAQHGAGKKALRLFDEMKKEGLK 361

Query: 74  ---VSWTAMICGLADAGRVCEARKLFEEMP-----ERNVVSWNSMVVGLIRNGELNEARK 125
              +++ A++     AG V    + F  M      E     +  MV  L R G+L+EA  
Sbjct: 362 PDWITFVAVLLACNHAGLVDLGVQYFNTMRRDFGIETKPEHYACMVDLLGRAGKLSEAVD 421

Query: 126 VFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFE-------EMEERNVVTWTSMISGYCR 178
           +  SMP K      A+    +  C + + + L E       E++      +  + + Y  
Sbjct: 422 LIKSMPFK---PHPAIYGTLLGACRIHKNLNLAEFAAKNLLELDPTIATGYVQLANVYAA 478

Query: 179 AGEVEEGYCLFRRMPRKNVVSWTAMIGGFAW 209
               +    + R M   NVV     I G++W
Sbjct: 479 QNRWDHVASIRRSMKDNNVVK----IPGYSW 505


>gi|297744558|emb|CBI37820.3| unnamed protein product [Vitis vinifera]
          Length = 504

 Score =  333 bits (854), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 186/538 (34%), Positives = 296/538 (55%), Gaps = 59/538 (10%)

Query: 58  LSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRN 117
           + EA +LF+ M ERNVVSW AM+ G    G V  A + F  MPER+  S +++V GLI+N
Sbjct: 1   MDEALQLFDSMQERNVVSWNAMVTGFLQNGDVERAIEFFMRMPERDSASLSALVAGLIQN 60

Query: 118 GELNEARKVFNSMPIKN------VISWNAMIAGYVECCMMGEAIVLFEEME--------- 162
           GEL+EA+++  +   ++      V ++N ++AGY +   + +A  LF+++          
Sbjct: 61  GELDEAKRILLTSRRQDDDKGDLVHAYNILLAGYGQNGRVDKARQLFDQIPFYDGGQKDG 120

Query: 163 ---ERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLL 219
              ERNVV+W SMI  Y +A ++     LF +M  ++ +SW                   
Sbjct: 121 GRFERNVVSWNSMIMCYVKARDIFSARVLFDQMKERDTISW------------------- 161

Query: 220 FIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSV 279
                              N+MI+GY+R   +EEA  LF  +P  D ++W SMI G+   
Sbjct: 162 -------------------NTMISGYVRMSDMEEAWMLFQEMPNPDTLTWNSMISGFAQK 202

Query: 280 GQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLF 339
           G +  A  LF  +P ++ V+W +MI+G   N  +  AT L+ +M   G  P   T S + 
Sbjct: 203 GNLELARALFATIPQKNLVSWNSMIAGYENNGDYKGATELYRQMLLQGEKPDRHTLSSVL 262

Query: 340 GAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNM-VSRDL 398
                 A + LG QIH  + KT    D+ + N LI+MY++CG I  A  IF  + + +++
Sbjct: 263 SVCSGFAALHLGMQIHQQITKTVI-PDIPINNSLITMYSRCGAIVEARTIFDEVKLQKEV 321

Query: 399 VSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNA 458
           +SWN+M+ G++ HG A + L++FE M      P  +TF+ +L+AC+HAG V  G   F +
Sbjct: 322 ISWNAMIGGYAFHGFAADALELFELMKRLKVRPTYITFISVLNACAHAGFVKEGRMHFKS 381

Query: 459 MFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNA 518
           M   + I+P  EH+ S+++++GR G+++EA + +  +PFEPD  +WGALLGAC     N 
Sbjct: 382 MACEFGIEPRIEHFASLVDIVGRHGQLEEAMDLINSMPFEPDKAVWGALLGACR-VHNNV 440

Query: 519 EIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWL 576
           E+A  AA+ L++L+P ++  +V+L N+YA  G+     ++RM M    +RK PG SW+
Sbjct: 441 ELARVAAEALMKLEPESSAPYVLLHNMYADVGQWDNATEMRMMMERNNIRKQPGYSWV 498



 Score =  189 bits (481), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 146/481 (30%), Positives = 211/481 (43%), Gaps = 125/481 (25%)

Query: 27  IDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGL--- 83
           +DEA  LF  M +RNVVS+NAM++GFLQNG +  A   F  MPER+  S +A++ GL   
Sbjct: 1   MDEALQLFDSMQERNVVSWNAMVTGFLQNGDVERAIEFFMRMPERDSASLSALVAGLIQN 60

Query: 84  ----------------------------------ADAGRVCEARKLFEEMP--------- 100
                                                GRV +AR+LF+++P         
Sbjct: 61  GELDEAKRILLTSRRQDDDKGDLVHAYNILLAGYGQNGRVDKARQLFDQIPFYDGGQKDG 120

Query: 101 ---ERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVL 157
              ERNVVSWNSM++  ++  ++  AR +F+ M  ++ ISWN MI+GYV    M EA +L
Sbjct: 121 GRFERNVVSWNSMIMCYVKARDIFSARVLFDQMKERDTISWNTMISGYVRMSDMEEAWML 180

Query: 158 FEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESL 217
           F+EM   + +TW SMISG+ + G +E    LF  +P+KN+VSW +MI G+  NG +K + 
Sbjct: 181 FQEMPNPDTLTWNSMISGFAQKGNLELARALFATIPQKNLVSWNSMIAGYENNGDYKGAT 240

Query: 218 LLFIEMKGICDNGNNCNVQSC-------------------------------NSMINGYI 246
            L+ +M    +  +   + S                                NS+I  Y 
Sbjct: 241 ELYRQMLLQGEKPDRHTLSSVLSVCSGFAALHLGMQIHQQITKTVIPDIPINNSLITMYS 300

Query: 247 RFGRLEEAQNLFDTVPVRDE-ISWTSMIDGYLSVGQVSNAYYLFHNMPDRDA----VAWT 301
           R G + EA+ +FD V ++ E ISW +MI GY   G  ++A  LF  M         + + 
Sbjct: 301 RCGAIVEARTIFDEVKLQKEVISWNAMIGGYAFHGFAADALELFELMKRLKVRPTYITFI 360

Query: 302 AMISGLVQNELFVEATYLFMEMRA--------------------HG-------------V 328
           ++++         E    F  M                      HG              
Sbjct: 361 SVLNACAHAGFVKEGRMHFKSMACEFGIEPRIEHFASLVDIVGRHGQLEEAMDLINSMPF 420

Query: 329 PPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESD---LILENCLISMYAKCGVIDN 385
            P  A +  L GA     N++L R     LMK E ES    ++L N    MYA  G  DN
Sbjct: 421 EPDKAVWGALLGACRVHNNVELARVAAEALMKLEPESSAPYVLLHN----MYADVGQWDN 476

Query: 386 A 386
           A
Sbjct: 477 A 477


>gi|224066769|ref|XP_002302206.1| predicted protein [Populus trichocarpa]
 gi|222843932|gb|EEE81479.1| predicted protein [Populus trichocarpa]
          Length = 681

 Score =  333 bits (853), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 198/630 (31%), Positives = 306/630 (48%), Gaps = 77/630 (12%)

Query: 21  YSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMI 80
           Y++ G + +A  LF  MP RN  S+N M+ G++++G    + RLF+ M  +N  SW  + 
Sbjct: 51  YTRCGSMTDAHKLFDEMPHRNCFSWNTMIEGYMKSGNKERSIRLFDMMSNKNDYSWNVVF 110

Query: 81  CGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVF------------- 127
            G A AG +  AR+LF EMP RN V WNSM+    RNG   EA ++F             
Sbjct: 111 SGFAKAGEMEIARRLFNEMPNRNGVVWNSMIHSYARNGSPREAVRLFKELNLDPLDKSCC 170

Query: 128 ------------------------------NSMPIKNVISWNAMIAGYVECCMMGEAIVL 157
                                         ++M + +V++ +++I  Y +C  +  A  +
Sbjct: 171 DTFVLATVIGACTDLGEIQCGKQIHARILIDNMELDSVLT-SSLINLYGKCGDLDSAHCV 229

Query: 158 FEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESL 217
              MEE +  + +++I+GY   G + +    F R     VV W ++I G+  N    E+ 
Sbjct: 230 LNTMEEPDDFSLSALITGYANHGRMNDARRAFYRKSNSCVVVWNSLISGYVTNNEEIEAF 289

Query: 218 LLFIEM--KGI------------------------------CDNGNNCNVQSCNSMINGY 245
           LLF +M  KG+                              C  G  C+    ++ I+ Y
Sbjct: 290 LLFNDMQKKGLKVDFSTLATILSACSSLCNSQHGKQMHAYACKVGLICDNVVASAFIDAY 349

Query: 246 IRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMIS 305
            + G L +A  LF  +   D I   SMI  Y + G++ +A  +F+ MP +  ++W +MI 
Sbjct: 350 SKCGSLNDACKLFSELKTYDTILLNSMITVYSNSGKIEDAKQIFNTMPSKSLISWNSMIV 409

Query: 306 GLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESES 365
           GL QN   VEA  LF  M    +       + +  A  + ++++LG QI         +S
Sbjct: 410 GLSQNGCPVEALDLFCMMNKLDLRMNRFNLTSVISACASISSLELGEQIFARATVVGLDS 469

Query: 366 DLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESML 425
           D ++   L+  Y KCG I+    +F  M+  D +SWNSM+MG++ +G   E L +F  M 
Sbjct: 470 DEVISTSLVDFYCKCGFIEIGRKLFDTMMKSDEISWNSMLMGYATNGHGLEALTLFNEMR 529

Query: 426 ESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKI 485
            +G  P  +TF G+LSAC H GLV  GW  FN M   Y I PG EHY  M++L  RAG +
Sbjct: 530 HAGVRPTEITFTGVLSACDHCGLVKEGWRWFNIMQYDYHIDPGIEHYSCMVDLFARAGCL 589

Query: 486 KEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNI 545
           +EA   + R+PFE D  +W ++L  C    G  ++ E  A++++ELDP N+ A+V L +I
Sbjct: 590 EEAMNLIKRMPFEADASMWSSVLRGC-MAHGEKDLGEKVAQQIIELDPENSGAYVQLSSI 648

Query: 546 YAASGRHVEEHKLRMDMGLKGVRKVPGCSW 575
           +A SG       +R  M  + V+K PG SW
Sbjct: 649 FATSGDWESSALVRKVMQERQVQKYPGYSW 678



 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 126/467 (26%), Positives = 213/467 (45%), Gaps = 68/467 (14%)

Query: 108 NSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVV 167
           N ++    R G + +A K+F+ MP +N  SWN MI GY++      +I LF+ M  +N  
Sbjct: 45  NRLLQMYTRCGSMTDAHKLFDEMPHRNCFSWNTMIEGYMKSGNKERSIRLFDMMSNKNDY 104

Query: 168 TWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEM---- 223
           +W  + SG+ +AGE+E    LF  MP +N V W +MI  +A NG  +E++ LF E+    
Sbjct: 105 SWNVVFSGFAKAGEMEIARRLFNEMPNRNGVVWNSMIHSYARNGSPREAVRLFKELNLDP 164

Query: 224 --KGICDNG---------------------------NNCNVQS--CNSMINGYIRFGRLE 252
             K  CD                             +N  + S   +S+IN Y + G L+
Sbjct: 165 LDKSCCDTFVLATVIGACTDLGEIQCGKQIHARILIDNMELDSVLTSSLINLYGKCGDLD 224

Query: 253 EAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNEL 312
            A  + +T+   D+ S +++I GY + G++++A   F+   +   V W ++ISG V N  
Sbjct: 225 SAHCVLNTMEEPDDFSLSALITGYANHGRMNDARRAFYRKSNSCVVVWNSLISGYVTNNE 284

Query: 313 FVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIH----------------- 355
            +EA  LF +M+  G+    +T + +  A  +  N   G+Q+H                 
Sbjct: 285 EIEAFLLFNDMQKKGLKVDFSTLATILSACSSLCNSQHGKQMHAYACKVGLICDNVVASA 344

Query: 356 --------------CVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSW 401
                         C L       D IL N +I++Y+  G I++A  IF+ M S+ L+SW
Sbjct: 345 FIDAYSKCGSLNDACKLFSELKTYDTILLNSMITVYSNSGKIEDAKQIFNTMPSKSLISW 404

Query: 402 NSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFD 461
           NSM++G S +G   E L +F  M +     N      ++SAC+    +  G ++F A   
Sbjct: 405 NSMIVGLSQNGCPVEALDLFCMMNKLDLRMNRFNLTSVISACASISSLELGEQIF-ARAT 463

Query: 462 VYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALL 508
           V  +        S+++   + G I+   +    +  + D   W ++L
Sbjct: 464 VVGLDSDEVISTSLVDFYCKCGFIEIGRKLFDTM-MKSDEISWNSML 509



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 121/430 (28%), Positives = 209/430 (48%), Gaps = 22/430 (5%)

Query: 14  LTSS-ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERN 72
           LTSS I  Y K G +D A  +   M + +  S +A+++G+  +GR+++ARR F       
Sbjct: 209 LTSSLINLYGKCGDLDSAHCVLNTMEEPDDFSLSALITGYANHGRMNDARRAFYRKSNSC 268

Query: 73  VVSWTAMICGLADAGRVCEARKLFEEMPERNV-VSWNSMVVGL--------IRNGELNEA 123
           VV W ++I G        EA  LF +M ++ + V ++++   L         ++G+   A
Sbjct: 269 VVVWNSLISGYVTNNEEIEAFLLFNDMQKKGLKVDFSTLATILSACSSLCNSQHGKQMHA 328

Query: 124 RKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVE 183
                 +   NV++ +A I  Y +C  + +A  LF E++  + +   SMI+ Y  +G++E
Sbjct: 329 YACKVGLICDNVVA-SAFIDAYSKCGSLNDACKLFSELKTYDTILLNSMITVYSNSGKIE 387

Query: 184 EGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMIN 243
           +   +F  MP K+++SW +MI G + NG   E+L LF  M  +    N  N+    S+I+
Sbjct: 388 DAKQIFNTMPSKSLISWNSMIVGLSQNGCPVEALDLFCMMNKLDLRMNRFNL---TSVIS 444

Query: 244 GYIRFGRLEEAQNLFDTVPV----RDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVA 299
                  LE  + +F    V     DE+  TS++D Y   G +     LF  M   D ++
Sbjct: 445 ACASISSLELGEQIFARATVVGLDSDEVISTSLVDFYCKCGFIEIGRKLFDTMMKSDEIS 504

Query: 300 WTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLM 359
           W +M+ G   N   +EA  LF EMR  GV P   TF+ +  A      +  G +   + M
Sbjct: 505 WNSMLMGYATNGHGLEALTLFNEMRHAGVRPTEITFTGVLSACDHCGLVKEGWRWFNI-M 563

Query: 360 KTESESDLILEN--CLISMYAKCGVIDNAYNIFSNM-VSRDLVSWNSMVMGFSHHGLANE 416
           + +   D  +E+  C++ ++A+ G ++ A N+   M    D   W+S++ G   HG  + 
Sbjct: 564 QYDYHIDPGIEHYSCMVDLFARAGCLEEAMNLIKRMPFEADASMWSSVLRGCMAHGEKDL 623

Query: 417 TLKVFESMLE 426
             KV + ++E
Sbjct: 624 GEKVAQQIIE 633



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 61/223 (27%), Positives = 97/223 (43%), Gaps = 28/223 (12%)

Query: 347 NIDLGRQIHCVLMKTE-SESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMV 405
           +I  G+Q+H +  K    +S L L N L+ MY +CG + +A+ +F  M  R+  SWN+M+
Sbjct: 20  SIHQGKQLHILFFKKGLIQSTLSLANRLLQMYTRCGSMTDAHKLFDEMPHRNCFSWNTMI 79

Query: 406 MGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKI 465
            G+   G    ++++F+ M     +  +V F G     + AG +     LFN M      
Sbjct: 80  EGYMKSGNKERSIRLFDMMSNKNDYSWNVVFSGF----AKAGEMEIARRLFNEM------ 129

Query: 466 QPGPEHYV--SMINLLGRAGKIKEAEEFVLRLPFEP------DHRIWGALLGACGFCEGN 517
            P     V  SMI+   R G  +EA      L  +P      D  +   ++GAC    G 
Sbjct: 130 -PNRNGVVWNSMIHSYARNGSPREAVRLFKELNLDPLDKSCCDTFVLATVIGACTDL-GE 187

Query: 518 AEIAEHAAKRLL----ELDPLNAPAHVVLCNIYAASGRHVEEH 556
            +  +    R+L    ELD +   +   L N+Y   G     H
Sbjct: 188 IQCGKQIHARILIDNMELDSVLTSS---LINLYGKCGDLDSAH 227


>gi|302760949|ref|XP_002963897.1| hypothetical protein SELMODRAFT_80086 [Selaginella moellendorffii]
 gi|300169165|gb|EFJ35768.1| hypothetical protein SELMODRAFT_80086 [Selaginella moellendorffii]
          Length = 714

 Score =  332 bits (852), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 190/608 (31%), Positives = 316/608 (51%), Gaps = 31/608 (5%)

Query: 21  YSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMI 80
           Y + G + +A   F  +      S+N M++ + QNG L  A R F+  P ++VVSW  M+
Sbjct: 2   YGRCGCVADAVICFDSIRNPTAFSHNVMVAAYAQNGYLDLAARTFDRTPNKDVVSWNGML 61

Query: 81  CGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNA 140
            G A  G   +A+  F+EMP +N VS+N+++    R G L EAR +FNSM I++  +WN 
Sbjct: 62  SGYARYGSFRDAKLFFDEMPYKNTVSYNTLISAFARQGNLAEARNLFNSMKIRDAATWNV 121

Query: 141 MIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSW 200
           +IAGY + C+   A  +F+    RNVVTW +MI GY +AG ++    LF  MP+ N V W
Sbjct: 122 LIAGYTQRCLCTHAREIFDRAPVRNVVTWNTMIGGYAQAGHLDNATELFGLMPQWNEVCW 181

Query: 201 TAMIGGFAWNGFHKESLLLF-----------IEMKGICDNGNN-------------CNVQ 236
            A+I G   N    ++L LF           I M   C +  +              +V 
Sbjct: 182 NALISGMGRNRRLPDALELFQALPFRDMVSWIAMIQGCVHSGDLHRAWDLFKRMPLTDVV 241

Query: 237 SCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPD-R 295
              +++  +   G L+EA++LFD +P++D  +  +MI  Y   G+++ A  LF +  D R
Sbjct: 242 IWTAIVTAFAHSGFLQEARDLFDAIPIKDAAAVNAMIAAYGLHGEIARAKDLFDSAGDLR 301

Query: 296 DAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIH 355
           D ++W A+++   QN    +A  +F  M   G+ P   +F     A      +  G+ +H
Sbjct: 302 DVISWNALLAAFSQNGHARQALGIFAGMDLEGIHPDGISFVSALDACTILTALREGKLLH 361

Query: 356 CVLMKTESESDLILE----NCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHH 411
             L+   S+ ++ +E      L++ YAKCG +D A ++F  M   D +  NSM+  ++  
Sbjct: 362 EELL-LASQGEIFVEASLATALVNFYAKCGRLDEARSLFDAMAFCDAILLNSMLGAYAQS 420

Query: 412 GLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEH 471
           G A E   +F+  + SG HP++VTF+ ++SACSHAGL+  G   F ++   + + P   H
Sbjct: 421 GRAGEAADLFQRAILSGIHPDAVTFVSMVSACSHAGLLDLGHRYFLSLVGDFALAPHAAH 480

Query: 472 YVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLEL 531
           Y  M++LL R G + + E+ +  +PF+P++  W +LL  C    G+       A+R    
Sbjct: 481 YTCMVDLLARTGHLMDGEDLLDAMPFQPEYTAWKSLLAGCR-THGDVGRGARLARRATNA 539

Query: 532 DPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKI 591
           +P+ +  +V+L  +Y A+G+H +   +R  M  + +RK  G S +   G    F++G K 
Sbjct: 540 NPVCSSPYVLLSRLYDAAGKHGDGISVRKAMDARRLRKPAGLSSITIKGRAHEFVAGGKN 599

Query: 592 PAQVAEIL 599
             +++ IL
Sbjct: 600 HPEISAIL 607


>gi|357508407|ref|XP_003624492.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355499507|gb|AES80710.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1125

 Score =  332 bits (852), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 205/663 (30%), Positives = 337/663 (50%), Gaps = 83/663 (12%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWT 77
           +  + +RG ++ A+ LF  MP +N+ S N M+ G++++G LSEAR LF+ M +R  V+WT
Sbjct: 108 VKSFLQRGDLNGARKLFDEMPHKNIFSTNTMIMGYIKSGNLSEARTLFDSMFQRTAVTWT 167

Query: 78  AMICGLADAGRVCEARKLFEEMPERNV----VSWNSMVVGLIRNGELNEARKV------- 126
            +I G A   +  EA  LF EM    +    VS  +++ G      +NE R+V       
Sbjct: 168 MLIGGYAQNNQFREAFGLFIEMGRHGIDPDHVSLATLLSGFTEFDSVNEVRQVHSHVIKL 227

Query: 127 ----------------------------FNSMPIKNVISWNAMIAGYVECCMMGEAIVLF 158
                                       FN +P ++ +++NA++ GY +     EAI LF
Sbjct: 228 GYDSTLVVSNSLLDSYCKTRSLGLAFQLFNDIPERDSVTFNALLTGYSKEGFNREAINLF 287

Query: 159 EEMEER---------------------------------------NVVTWTSMISGYCRA 179
            +M+E                                        NV    +++  Y + 
Sbjct: 288 FKMQEVGYRPTEFTFAAILTAGIQLDDIEFGQQVHGFVVKCNFVWNVFVANALLDFYSKH 347

Query: 180 GEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCN 239
             V E   LF  MP  + +S+  ++  +AWNG  KESL LF E++    +  N    +  
Sbjct: 348 DRVVEASKLFYEMPEVDGISYNVLVTCYAWNGRVKESLELFKELQFTGFDRRNFPFATLL 407

Query: 240 SM--INGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDA 297
           S+  I+  +  GR   +Q +  T  + + +   S++D Y   G+   A  +F ++  + +
Sbjct: 408 SIAAISLNLDIGRQIHSQTIV-TDAISEILVGNSLVDMYAKCGEFGEANRIFSDLAIQSS 466

Query: 298 VAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCV 357
           V WTAMIS  VQ  L  +   LF+EM+   +    AT++ +  A  + A++ LG+Q+H  
Sbjct: 467 VPWTAMISSYVQKGLHEDGLKLFVEMQRAKIGADAATYASIVRACASLASLTLGKQLHSH 526

Query: 358 LMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANET 417
           ++ +   S++   + L+ MYAKCG I +A  +F  M  R+ VSWN+++  ++ +G  + T
Sbjct: 527 IIGSGYISNVFSGSALVDMYAKCGSIKDALQMFQEMPVRNSVSWNALISAYAQNGDGDCT 586

Query: 418 LKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMIN 477
           L++FE M+ SG  P+SV+ L IL ACSH GLV  G + F++M  +YK+ P  EHY S I+
Sbjct: 587 LRLFEEMVRSGLQPDSVSLLSILCACSHCGLVEEGLQYFDSMTRIYKLVPKKEHYASTID 646

Query: 478 LLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPL-NA 536
           +L R G+  EAE+ + ++PFEPD  +W ++L +CG    N E+A+ AA +L  +  L +A
Sbjct: 647 MLCRGGRFDEAEKLMAQMPFEPDEIMWSSVLNSCGI-HKNQELAKKAANQLFNMKVLRDA 705

Query: 537 PAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVA 596
             +V + NIYAA+G      K++  M  +GV+KVP  SW+       +F + DK   Q+ 
Sbjct: 706 APYVTMSNIYAAAGEWDNVGKVKKAMRERGVKKVPAYSWVEIKHKTHVFTANDKTHPQMR 765

Query: 597 EIL 599
           EI+
Sbjct: 766 EIM 768



 Score =  205 bits (522), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 127/486 (26%), Positives = 243/486 (50%), Gaps = 25/486 (5%)

Query: 41  NVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMP 100
           N    N ++  FLQ G L+ AR+LF+EMP +N+ S   MI G   +G + EAR LF+ M 
Sbjct: 100 NTYRSNFLVKSFLQRGDLNGARKLFDEMPHKNIFSTNTMIMGYIKSGNLSEARTLFDSMF 159

Query: 101 ERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNV----ISWNAMIAGYVECCMMGEAIV 156
           +R  V+W  ++ G  +N +  EA  +F  M    +    +S   +++G+ E   + E   
Sbjct: 160 QRTAVTWTMLIGGYAQNNQFREAFGLFIEMGRHGIDPDHVSLATLLSGFTEFDSVNEVRQ 219

Query: 157 LFEEM----EERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGF 212
           +   +     +  +V   S++  YC+   +   + LF  +P ++ V++ A++ G++  GF
Sbjct: 220 VHSHVIKLGYDSTLVVSNSLLDSYCKTRSLGLAFQLFNDIPERDSVTFNALLTGYSKEGF 279

Query: 213 HKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISW--- 269
           ++E++ LF +M+ +   G      +  +++   I+   +E  Q +   V V+    W   
Sbjct: 280 NREAINLFFKMQEV---GYRPTEFTFAAILTAGIQLDDIEFGQQVHGFV-VKCNFVWNVF 335

Query: 270 --TSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHG 327
              +++D Y    +V  A  LF+ MP+ D +++  +++    N    E+  LF E++  G
Sbjct: 336 VANALLDFYSKHDRVVEASKLFYEMPEVDGISYNVLVTCYAWNGRVKESLELFKELQFTG 395

Query: 328 VPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAY 387
               N  F+ L   A  + N+D+GRQIH   + T++ S++++ N L+ MYAKCG    A 
Sbjct: 396 FDRRNFPFATLLSIAAISLNLDIGRQIHSQTIVTDAISEILVGNSLVDMYAKCGEFGEAN 455

Query: 388 NIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAG 447
            IFS++  +  V W +M+  +   GL  + LK+F  M  +    ++ T+  I+ AC+   
Sbjct: 456 RIFSDLAIQSSVPWTAMISSYVQKGLHEDGLKLFVEMQRAKIGADAATYASIVRACASLA 515

Query: 448 LVSRGWELFNAMFD---VYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIW 504
            ++ G +L + +     +  +  G     +++++  + G IK+A +    +P   +   W
Sbjct: 516 SLTLGKQLHSHIIGSGYISNVFSGS----ALVDMYAKCGSIKDALQMFQEMPVR-NSVSW 570

Query: 505 GALLGA 510
            AL+ A
Sbjct: 571 NALISA 576



 Score =  139 bits (350), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 102/373 (27%), Positives = 169/373 (45%), Gaps = 33/373 (8%)

Query: 226 ICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNA 285
           I   G N N    N ++  +++ G L  A+ LFD +P ++  S  +MI GY+  G +S A
Sbjct: 92  IIKTGFNPNTYRSNFLVKSFLQRGDLNGARKLFDEMPHKNIFSTNTMIMGYIKSGNLSEA 151

Query: 286 YYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGAT 345
             LF +M  R AV WT +I G  QN  F EA  LF+EM  HG+ P + + + L       
Sbjct: 152 RTLFDSMFQRTAVTWTMLIGGYAQNNQFREAFGLFIEMGRHGIDPDHVSLATLLSGFTEF 211

Query: 346 ANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMV 405
            +++  RQ+H  ++K   +S L++ N L+  Y K   +  A+ +F+++  RD V++N+++
Sbjct: 212 DSVNEVRQVHSHVIKLGYDSTLVVSNSLLDSYCKTRSLGLAFQLFNDIPERDSVTFNALL 271

Query: 406 MGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRG------------- 452
            G+S  G   E + +F  M E G  P   TF  IL+A      +  G             
Sbjct: 272 TGYSKEGFNREAINLFFKMQEVGYRPTEFTFAAILTAGIQLDDIEFGQQVHGFVVKCNFV 331

Query: 453 WELF--NAMFDVYKIQPG-----------PE----HYVSMINLLGRAGKIKEAEEFVLRL 495
           W +F  NA+ D Y                PE     Y  ++      G++KE+ E    L
Sbjct: 332 WNVFVANALLDFYSKHDRVVEASKLFYEMPEVDGISYNVLVTCYAWNGRVKESLELFKEL 391

Query: 496 PFEP-DHRIWG-ALLGACGFCEGNAEIAEHAAKRLLELDPLNAP-AHVVLCNIYAASGRH 552
            F   D R +  A L +      N +I      + +  D ++       L ++YA  G  
Sbjct: 392 QFTGFDRRNFPFATLLSIAAISLNLDIGRQIHSQTIVTDAISEILVGNSLVDMYAKCGEF 451

Query: 553 VEEHKLRMDMGLK 565
            E +++  D+ ++
Sbjct: 452 GEANRIFSDLAIQ 464



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 75/308 (24%), Positives = 130/308 (42%), Gaps = 56/308 (18%)

Query: 16  SSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNV-- 73
           S +  Y+K G   EA  +F  +  ++ V + AM+S ++Q G   +  +LF EM    +  
Sbjct: 440 SLVDMYAKCGEFGEANRIFSDLAIQSSVPWTAMISSYVQKGLHEDGLKLFVEMQRAKIGA 499

Query: 74  --VSWTAMICGLADAGRVCEARKLFEEMPE----RNVVSWNSMVVGLIRNGELNEARKVF 127
              ++ +++   A    +   ++L   +       NV S +++V    + G + +A ++F
Sbjct: 500 DAATYASIVRACASLASLTLGKQLHSHIIGSGYISNVFSGSALVDMYAKCGSIKDALQMF 559

Query: 128 NSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEME----ERNVVTWTSMISGYCRAGEVE 183
             MP++N +SWNA+I+ Y +       + LFEEM     + + V+  S++      G VE
Sbjct: 560 QEMPVRNSVSWNALISAYAQNGDGDCTLRLFEEMVRSGLQPDSVSLLSILCACSHCGLVE 619

Query: 184 EGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMIN 243
           EG   F  M R                      +   +  K           +   S I+
Sbjct: 620 EGLQYFDSMTR----------------------IYKLVPKK-----------EHYASTID 646

Query: 244 GYIRFGRLEEAQNLFDTVPVR-DEISWTSMIDGYLSVGQVSN-------AYYLFHNMPDR 295
              R GR +EA+ L   +P   DEI W+S+++   S G   N       A  LF+    R
Sbjct: 647 MLCRGGRFDEAEKLMAQMPFEPDEIMWSSVLN---SCGIHKNQELAKKAANQLFNMKVLR 703

Query: 296 DAVAWTAM 303
           DA  +  M
Sbjct: 704 DAAPYVTM 711


>gi|255542982|ref|XP_002512554.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223548515|gb|EEF50006.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 544

 Score =  332 bits (851), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 165/432 (38%), Positives = 261/432 (60%), Gaps = 7/432 (1%)

Query: 16  SSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVS 75
           S I+ +++ G I+ A+ +F  +P + ++S+NA+++G+ QN +  EA  LF +MP+RN VS
Sbjct: 22  SQISHFARIGQINRARKIFDELPYKTIISWNAIVAGYFQNKQPREAHDLFNKMPDRNTVS 81

Query: 76  WTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNV 135
           W  +I G    G + EAR++F++MPERNVVSW +MV G I+ G + +A  +F  MP KNV
Sbjct: 82  WNGLISGYVKNGMINEAREVFDKMPERNVVSWTAMVRGYIQEGMIKQAESLFWEMPEKNV 141

Query: 136 ISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRK 195
           +SW  M+ G +E   + EAI L++ M  ++VV  T+MI G C  G + E   +F  MP++
Sbjct: 142 VSWTVMLGGLIEDGRVNEAIKLYDLMPLKDVVARTNMIGGLCMEGRLSEAREIFDEMPKR 201

Query: 196 NVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQ 255
           NVV+WT MI G+A N     +  LF  M        + N  +  +M+ GY R GR++EA 
Sbjct: 202 NVVAWTTMISGYAMNNKVDVARKLFEVMP-------DKNEVTWTAMLMGYTRSGRIKEAA 254

Query: 256 NLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVE 315
            LF+ +P++   +   MI G+   G+V  A + F  M ++D   W+AMI    +  L +E
Sbjct: 255 ELFEAMPMKPVPACNEMIIGFGQSGEVGKAKWTFDQMREKDDGTWSAMIKVYERKGLELE 314

Query: 316 ATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLIS 375
           A  LF  M+  GV P   +   +    G+ A++D GRQ+H  L++++ + D+ + + LI+
Sbjct: 315 ALDLFRLMQREGVRPNFPSIISILSVCGSLASLDYGRQVHTQLVRSQFDFDVYVSSVLIT 374

Query: 376 MYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVT 435
           MY KCG +  A  +F     +D V WNS++ G++ HGL  E L+VF  ML SG  P+ +T
Sbjct: 375 MYIKCGDLVKAKRVFDRFSMKDTVMWNSIITGYAQHGLGEEALEVFFEMLSSGISPDEIT 434

Query: 436 FLGILSACSHAG 447
           F+G+L+ACS++G
Sbjct: 435 FIGVLTACSYSG 446



 Score =  230 bits (586), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 153/519 (29%), Positives = 244/519 (47%), Gaps = 86/519 (16%)

Query: 72  NVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMP 131
           + +S  + I   A  G++  ARK+F+E+P + ++SWN++V G  +N +  EA  +FN MP
Sbjct: 16  SAISSNSQISHFARIGQINRARKIFDELPYKTIISWNAIVAGYFQNKQPREAHDLFNKMP 75

Query: 132 IKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRR 191
            +N +SWN +I+GYV+  M+ EA  +F++M ERNVV+WT+M+ GY + G +++   LF  
Sbjct: 76  DRNTVSWNGLISGYVKNGMINEAREVFDKMPERNVVSWTAMVRGYIQEGMIKQAESLFWE 135

Query: 192 MPRKNVVSWTAMIGGFAWNGFHKESLLLF--IEMKGICDNGNNCNVQSCNSMINGYIRFG 249
           MP KNVVSWT M+GG   +G   E++ L+  + +K +    N         MI G    G
Sbjct: 136 MPEKNVVSWTVMLGGLIEDGRVNEAIKLYDLMPLKDVVARTN---------MIGGLCMEG 186

Query: 250 RLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQ 309
           RL EA+ +FD +P R+ ++WT+MI GY    +V  A  LF  MPD++ V WTAM+ G  +
Sbjct: 187 RLSEAREIFDEMPKRNVVAWTTMISGYAMNNKVDVARKLFEVMPDKNEVTWTAMLMGYTR 246

Query: 310 NELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLIL 369
           +    EA  LF  M    VP  N                                     
Sbjct: 247 SGRIKEAAELFEAMPMKPVPACNE------------------------------------ 270

Query: 370 ENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGT 429
              +I  + + G +  A   F  M  +D  +W++M+  +   GL  E L +F  M   G 
Sbjct: 271 ---MIIGFGQSGEVGKAKWTFDQMREKDDGTWSAMIKVYERKGLELEALDLFRLMQREGV 327

Query: 430 HPNSVTFLGILSACSHAGLVSRG----WELFNAMFDVYKIQPGPEHYVS--MINLLGRAG 483
            PN  + + ILS C     +  G     +L  + FD        + YVS  +I +  + G
Sbjct: 328 RPNFPSIISILSVCGSLASLDYGRQVHTQLVRSQFDF-------DVYVSSVLITMYIKCG 380

Query: 484 KIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLE-LDPLNAPAHVVL 542
            + +A+    R   + D  +W +++   G+ +    + E A +   E L    +P  +  
Sbjct: 381 DLVKAKRVFDRFSMK-DTVMWNSII--TGYAQHG--LGEEALEVFFEMLSSGISPDEITF 435

Query: 543 CNIYAA---SGRHVEEHKLRMDMGLKGVRKVPGCSWLMR 578
             +  A   SG+H               RK P C  ++R
Sbjct: 436 IGVLTACSYSGKH--------------RRKQPPCKLIVR 460



 Score =  177 bits (449), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 105/293 (35%), Positives = 163/293 (55%), Gaps = 13/293 (4%)

Query: 7   PKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFE 66
           P+  VV  T  +    + G ++EA  L+ LMP ++VV+   M+ G    GRLSEAR +F+
Sbjct: 137 PEKNVVSWTVMLGGLIEDGRVNEAIKLYDLMPLKDVVARTNMIGGLCMEGRLSEAREIFD 196

Query: 67  EMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKV 126
           EMP+RNVV+WT MI G A   +V  ARKLFE MP++N V+W +M++G  R+G + EA ++
Sbjct: 197 EMPKRNVVAWTTMISGYAMNNKVDVARKLFEVMPDKNEVTWTAMLMGYTRSGRIKEAAEL 256

Query: 127 FNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGY 186
           F +MP+K V + N MI G+ +   +G+A   F++M E++  TW++MI  Y R G   E  
Sbjct: 257 FEAMPMKPVPACNEMIIGFGQSGEVGKAKWTFDQMREKDDGTWSAMIKVYERKGLELEAL 316

Query: 187 CLFRRMPRKNV-------VSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCN 239
            LFR M R+ V       +S  ++ G  A   + ++     +  +   D      V   +
Sbjct: 317 DLFRLMQREGVRPNFPSIISILSVCGSLASLDYGRQVHTQLVRSQFDFD------VYVSS 370

Query: 240 SMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNM 292
            +I  YI+ G L +A+ +FD   ++D + W S+I GY   G    A  +F  M
Sbjct: 371 VLITMYIKCGDLVKAKRVFDRFSMKDTVMWNSIITGYAQHGLGEEALEVFFEM 423


>gi|359477376|ref|XP_002280144.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Vitis vinifera]
          Length = 642

 Score =  332 bits (851), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 194/577 (33%), Positives = 316/577 (54%), Gaps = 16/577 (2%)

Query: 21  YSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPER--NVVSWT- 77
           YS+ G  D A  +F  + Q N   + +++ G+++N +  EA  LF +M     +V+++T 
Sbjct: 45  YSRFGATDYAHKVFDEITQPNAYLWTSLIHGYVENRQYDEAFSLFIQMRREPISVLNFTI 104

Query: 78  -AMICGLADAGRVCEARKLFEEMPER----NVVSWNSMVVGLIRNGELNEARKVFNSMPI 132
            +++  LA   R    + ++  + +     +++  NS++   +R  +++ AR+ F+ M  
Sbjct: 105 SSVLKALARLTRFKGGQAVYGFVLKYGFAFDLIVQNSVLDLFMRCRKVDTARQAFDEMCE 164

Query: 133 KNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRM 192
           K+++SWN MI+GY     +  A   F+ M ERNVV+WTSMI GY +AG++ E   LF  M
Sbjct: 165 KDIVSWNMMISGYGNNDRVDIARKFFDRMPERNVVSWTSMICGYVKAGDMAEAQVLFDSM 224

Query: 193 PRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLE 252
           P K++ SW  M+ G+   G    + ++F +M  I D G      S N MI+G+ + G LE
Sbjct: 225 PVKDLASWNVMVSGYMDIGDCVNARIIFGKMP-IHDTG------SWNIMISGFCKAGELE 277

Query: 253 EAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNEL 312
            A++ FD +P ++ ISW  M+DGY+  G  + A  LF  MP ++ V W+ MI G  +N  
Sbjct: 278 SAKDFFDRMPNKNVISWGIMLDGYIKNGDTNGARCLFDQMPMKNLVTWSTMIGGYARNGQ 337

Query: 313 FVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENC 372
            ++A  LF   +   + P       +  A      ID    I    +     SDL +   
Sbjct: 338 PLKALELFERFKEQDIKPDETFILGIISACSQLGIIDAAESIIHNYVGPSLLSDLRVFTS 397

Query: 373 LISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPN 432
           LI MYAKCG I+ A  +F     +DL+ +++M+   ++HGL  + + +F+ M  +   P+
Sbjct: 398 LIDMYAKCGSIEKALQMFEMAHPKDLLCYSTMIAALANHGLGRDAIFLFDKMQRANIKPD 457

Query: 433 SVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFV 492
           SVTFLG+L+AC+H GLV  G + F  M + + IQP  +HY  +++LLGR G ++EA   +
Sbjct: 458 SVTFLGVLTACNHGGLVDEGRKYFKQMTEEFGIQPSEKHYACVVDLLGRVGCLEEAYNLI 517

Query: 493 LRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRH 552
             +P  P   +WGALL AC     N ++AE AA  L +++P N+  +++L NIYAA+GR 
Sbjct: 518 RNMPIAPHSVVWGALLAACR-VHCNVQLAEVAAAELFKIEPDNSGNYILLSNIYAAAGRW 576

Query: 553 VEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGD 589
               K+R  +    VRK  G SW+  +  +  F+ GD
Sbjct: 577 GSVAKVRAKIREHRVRKNRGSSWIELSHVVHEFVMGD 613



 Score =  205 bits (522), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 138/464 (29%), Positives = 225/464 (48%), Gaps = 73/464 (15%)

Query: 4   RNHPKSLVVHLTSSITKYSKR-----------GFIDEAKALFQLMPQRNVVSYNAMLSGF 52
           R  P S++    SS+ K   R           GF+ +    F L+ Q      N++L  F
Sbjct: 93  RREPISVLNFTISSVLKALARLTRFKGGQAVYGFVLKYGFAFDLIVQ------NSVLDLF 146

Query: 53  LQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVV 112
           ++  ++  AR+ F+EM E+++VSW  MI G  +  RV  ARK F+ MPERNVVSW SM+ 
Sbjct: 147 MRCRKVDTARQAFDEMCEKDIVSWNMMISGYGNNDRVDIARKFFDRMPERNVVSWTSMIC 206

Query: 113 GLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSM 172
           G ++ G++ EA+ +F+SMP+K++ SWN M++GY++      A ++F +M   +  +W  M
Sbjct: 207 GYVKAGDMAEAQVLFDSMPVKDLASWNVMVSGYMDIGDCVNARIIFGKMPIHDTGSWNIM 266

Query: 173 ISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNN 232
           ISG+C+AGE+E     F RMP KNV+SW  M+ G+  NG    +  LF +M         
Sbjct: 267 ISGFCKAGELESAKDFFDRMPNKNVISWGIMLDGYIKNGDTNGARCLFDQMP-------M 319

Query: 233 CNVQSCNSMINGYIRFGRLEEAQNLF------DTVP------------------------ 262
            N+ + ++MI GY R G+  +A  LF      D  P                        
Sbjct: 320 KNLVTWSTMIGGYARNGQPLKALELFERFKEQDIKPDETFILGIISACSQLGIIDAAESI 379

Query: 263 ---------VRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELF 313
                    + D   +TS+ID Y   G +  A  +F     +D + ++ MI+ L  + L 
Sbjct: 380 IHNYVGPSLLSDLRVFTSLIDMYAKCGSIEKALQMFEMAHPKDLLCYSTMIAALANHGLG 439

Query: 314 VEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILEN-- 371
            +A +LF +M+   + P + TF  +  A      +D GR+      K  +E   I  +  
Sbjct: 440 RDAIFLFDKMQRANIKPDSVTFLGVLTACNHGGLVDEGRK----YFKQMTEEFGIQPSEK 495

Query: 372 ---CLISMYAKCGVIDNAYNIFSNM-VSRDLVSWNSMVMGFSHH 411
              C++ +  + G ++ AYN+  NM ++   V W +++     H
Sbjct: 496 HYACVVDLLGRVGCLEEAYNLIRNMPIAPHSVVWGALLAACRVH 539



 Score = 92.4 bits (228), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 54/206 (26%), Positives = 100/206 (48%), Gaps = 4/206 (1%)

Query: 254 AQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELF 313
           A+ L ++     E     ++  Y   G    A+ +F  +   +A  WT++I G V+N  +
Sbjct: 23  ARLLIESSVASSEFVINKLLRLYSRFGATDYAHKVFDEITQPNAYLWTSLIHGYVENRQY 82

Query: 314 VEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCL 373
            EA  LF++MR   +  LN T S +  A         G+ ++  ++K     DLI++N +
Sbjct: 83  DEAFSLFIQMRREPISVLNFTISSVLKALARLTRFKGGQAVYGFVLKYGFAFDLIVQNSV 142

Query: 374 ISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNS 433
           + ++ +C  +D A   F  M  +D+VSWN M+ G+ ++   +   K F+ M E     N 
Sbjct: 143 LDLFMRCRKVDTARQAFDEMCEKDIVSWNMMISGYGNNDRVDIARKFFDRMPER----NV 198

Query: 434 VTFLGILSACSHAGLVSRGWELFNAM 459
           V++  ++     AG ++    LF++M
Sbjct: 199 VSWTSMICGYVKAGDMAEAQVLFDSM 224


>gi|224071204|ref|XP_002303374.1| predicted protein [Populus trichocarpa]
 gi|222840806|gb|EEE78353.1| predicted protein [Populus trichocarpa]
          Length = 569

 Score =  332 bits (851), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 170/470 (36%), Positives = 269/470 (57%), Gaps = 9/470 (1%)

Query: 130 MPIKNVISWNAMIAGYVEC-CMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCL 188
           M +K  ++WN+++AG  +    + EA  LF ++ E + V++ +M+S Y R   +E     
Sbjct: 1   MTLKTTVTWNSVLAGMSKKRGKLKEAQELFVKIPEPDAVSYNTMLSCYVRNSNMERAQAF 60

Query: 189 FRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRF 248
           F  MP K+  SW  MI GFA N    ++  LF+ M          NV + N+MI+GY+  
Sbjct: 61  FEDMPIKDTPSWNTMITGFAQNQQMDKARDLFLIMP-------TKNVVTWNAMISGYVEC 113

Query: 249 GRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLV 308
           G L+ A  LF+  P +  ++WT+MI GY+ +G++  A  LF  MP+++ V W AMI+G +
Sbjct: 114 GDLDSALKLFEKAPFKSVVAWTAMITGYMKLGRIGLAERLFEKMPEKNLVTWNAMIAGYI 173

Query: 309 QNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLI 368
           +N    +   LF  M   G+ P ++T S         + + LGRQ+H ++ K+    D  
Sbjct: 174 ENHRAEDGVKLFRTMVGFGIQPNSSTLSSALLGCSELSALQLGRQVHQLVCKSPLCDDTT 233

Query: 369 LENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESG 428
               LISMY KCGV+++ + +F  +  RD+V+WN+M+ G++ HG   + L +F+ M+E G
Sbjct: 234 AGTSLISMYCKCGVLEDGWKLFVQVPRRDVVTWNAMISGYAQHGEGKKALGLFDEMIEKG 293

Query: 429 THPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEA 488
             P+ +TF+ +L AC+HAG    G + F++M   Y +   P+HY  M++LLGRAGK+ EA
Sbjct: 294 MKPDWITFVAVLMACNHAGFTDLGVKYFHSMAKDYGLVAKPDHYTCMVDLLGRAGKLVEA 353

Query: 489 EEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAA 548
            + + ++PF+P   ++G LLGAC     N E+AE A+++LL LDP +A  +V L N+YAA
Sbjct: 354 VDLIEKMPFKPHAAVFGTLLGACRI-HKNTEMAEFASQKLLNLDPASATGYVQLANVYAA 412

Query: 549 SGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
           + R     ++R  M    V K PG SW+        F SGDK   ++A I
Sbjct: 413 TKRWDHVARVRKSMKSCKVVKTPGYSWIEVKSMAHQFRSGDKFHPELASI 462



 Score =  191 bits (484), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 103/281 (36%), Positives = 160/281 (56%), Gaps = 13/281 (4%)

Query: 22  SKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMIC 81
            KRG + EA+ LF  +P+ + VSYN MLS +++N  +  A+  FE+MP ++  SW  MI 
Sbjct: 18  KKRGKLKEAQELFVKIPEPDAVSYNTMLSCYVRNSNMERAQAFFEDMPIKDTPSWNTMIT 77

Query: 82  GLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAM 141
           G A   ++ +AR LF  MP +NVV+WN+M+ G +  G+L+ A K+F   P K+V++W AM
Sbjct: 78  GFAQNQQMDKARDLFLIMPTKNVVTWNAMISGYVECGDLDSALKLFEKAPFKSVVAWTAM 137

Query: 142 IAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRM------PRK 195
           I GY++   +G A  LFE+M E+N+VTW +MI+GY      E+G  LFR M      P  
Sbjct: 138 ITGYMKLGRIGLAERLFEKMPEKNLVTWNAMIAGYIENHRAEDGVKLFRTMVGFGIQPNS 197

Query: 196 NVVSWTAMIGGFAWNGFH-KESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEA 254
           + +S +A++G    +       +   +    +CD     +  +  S+I+ Y + G LE+ 
Sbjct: 198 STLS-SALLGCSELSALQLGRQVHQLVCKSPLCD-----DTTAGTSLISMYCKCGVLEDG 251

Query: 255 QNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDR 295
             LF  VP RD ++W +MI GY   G+   A  LF  M ++
Sbjct: 252 WKLFVQVPRRDVVTWNAMISGYAQHGEGKKALGLFDEMIEK 292



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 104/330 (31%), Positives = 166/330 (50%), Gaps = 45/330 (13%)

Query: 7   PKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFE 66
           P+   V   + ++ Y +   ++ A+A F+ MP ++  S+N M++GF QN ++ +AR LF 
Sbjct: 34  PEPDAVSYNTMLSCYVRNSNMERAQAFFEDMPIKDTPSWNTMITGFAQNQQMDKARDLFL 93

Query: 67  EMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKV 126
            MP +NVV+W AMI G  + G +  A KLFE+ P ++VV+W +M+ G ++ G +  A ++
Sbjct: 94  IMPTKNVVTWNAMISGYVECGDLDSALKLFEKAPFKSVVAWTAMITGYMKLGRIGLAERL 153

Query: 127 FNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEE----------------------- 163
           F  MP KN+++WNAMIAGY+E     + + LF  M                         
Sbjct: 154 FEKMPEKNLVTWNAMIAGYIENHRAEDGVKLFRTMVGFGIQPNSSTLSSALLGCSELSAL 213

Query: 164 ----------------RNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGF 207
                            +    TS+IS YC+ G +E+G+ LF ++PR++VV+W AMI G+
Sbjct: 214 QLGRQVHQLVCKSPLCDDTTAGTSLISMYCKCGVLEDGWKLFVQVPRRDVVTWNAMISGY 273

Query: 208 AWNGFHKESLLLFIEM--KGICDNGNN--CNVQSCNSMINGYIRFGRLEEAQNLFDTVPV 263
           A +G  K++L LF EM  KG+  +       + +CN    G+   G         D   V
Sbjct: 274 AQHGEGKKALGLFDEMIEKGMKPDWITFVAVLMACNHA--GFTDLGVKYFHSMAKDYGLV 331

Query: 264 RDEISWTSMIDGYLSVGQVSNAYYLFHNMP 293
                +T M+D     G++  A  L   MP
Sbjct: 332 AKPDHYTCMVDLLGRAGKLVEAVDLIEKMP 361


>gi|308080264|ref|NP_001183681.1| uncharacterized protein LOC100502275 [Zea mays]
 gi|238013832|gb|ACR37951.1| unknown [Zea mays]
 gi|413938826|gb|AFW73377.1| hypothetical protein ZEAMMB73_579690 [Zea mays]
          Length = 745

 Score =  331 bits (849), Expect = 6e-88,   Method: Compositional matrix adjust.
 Identities = 189/602 (31%), Positives = 318/602 (52%), Gaps = 29/602 (4%)

Query: 7   PKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFE 66
           P  L+ HL   +T Y K G    A+ +F   P  N+ +YNA+LS       L +   LF 
Sbjct: 40  PTHLLNHL---LTAYGKAGRHARARRVFDATPHPNLFTYNALLSTLAHARLLDDMDSLFA 96

Query: 67  EMPERNVVSWTAMICGLADAGRVCEARKLFEEM--------PERNVVSWNSMVVGLIRNG 118
            M +R+ VS+ A+I G +  G    A +L+  +        P R  ++ ++MV+     G
Sbjct: 97  SMAQRDTVSYNAVIAGFSGGGAHARAVRLYHTLLRAGSSVRPSR--ITMSAMVMAASALG 154

Query: 119 ELNEARKVFNSMPIK-----NVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMI 173
           +    R+ F+   ++     N    + ++  Y +  ++G+A  +F+EM+ +NVV + +MI
Sbjct: 155 DRALGRQ-FHCQILRLGFGVNAFVGSPLVGMYAKMGLIGDAKRVFDEMDGKNVVMYNTMI 213

Query: 174 SGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNC 233
           +G  R   VEE   LF  M  ++ ++WT M+ GF  NG   ++L  F  M+     G   
Sbjct: 214 TGLLRCKMVEEARRLFEVMTDRDCITWTTMVTGFTQNGLESQALNFFRRMRF---QGIAI 270

Query: 234 NVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEIS-----WTSMIDGYLSVGQVSNAYYL 288
           +  +  S++        LE+ + +   + +R          ++++D Y     +  A   
Sbjct: 271 DQYTFGSILTACGALSALEQGKQIHAYI-IRTHYDDNVFVGSALVDMYSKCRSIKPAETA 329

Query: 289 FHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANI 348
           F  M  ++ ++WTA+I G  QN    EA  +F EM+  G+ P + T   +  +    A++
Sbjct: 330 FRRMSCKNIISWTALIVGYGQNGCSEEAVRVFSEMQRDGIDPDDFTLGSVISSCANLASL 389

Query: 349 DLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGF 408
           + G Q HC+ + +     + + N L+++Y KCG I++A+ +F  M+  D VSW ++V G+
Sbjct: 390 EEGAQFHCLALVSGLMHYITVSNALVTLYGKCGSIEDAHRLFDEMLFHDQVSWTALVTGY 449

Query: 409 SHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPG 468
           +  G A ET+ +FE ML     P+ VTF+G+LSACS AG V +G   F++M   + I P 
Sbjct: 450 AQFGRAKETIDLFEKMLAKDVKPDGVTFIGVLSACSRAGFVEKGCSYFHSMQKDHGIVPI 509

Query: 469 PEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRL 528
            +HY  MI+L  R+G++KEAEEF+ ++P  PD   WG LL AC    G+ EI + AA+ L
Sbjct: 510 DDHYTCMIDLYSRSGRLKEAEEFIKQMPMHPDAIGWGTLLSACRL-RGDMEIGQWAAENL 568

Query: 529 LELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSG 588
           LE+DP N  ++V+LC+++A  G   +  +LR  M  + V+K PGCSW+     + +F + 
Sbjct: 569 LEIDPQNPASYVLLCSMHATKGNWNQVAQLRRGMRDRQVKKEPGCSWIKYKNKVHIFSAD 628

Query: 589 DK 590
           D+
Sbjct: 629 DQ 630



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 81/299 (27%), Positives = 135/299 (45%), Gaps = 57/299 (19%)

Query: 4   RNHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARR 63
           R H    V   ++ +  YSK   I  A+  F+ M  +N++S+ A++ G+ QNG   EA R
Sbjct: 300 RTHYDDNVFVGSALVDMYSKCRSIKPAETAFRRMSCKNIISWTALIVGYGQNGCSEEAVR 359

Query: 64  LFEEM------PER----NVVSWTAMICGLADAGRV-CEARKLFEEMPERNVVSWNSMVV 112
           +F EM      P+     +V+S  A +  L +  +  C A  L   +     VS N++V 
Sbjct: 360 VFSEMQRDGIDPDDFTLGSVISSCANLASLEEGAQFHCLA--LVSGLMHYITVS-NALVT 416

Query: 113 GLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNV----VT 168
              + G + +A ++F+ M   + +SW A++ GY +     E I LFE+M  ++V    VT
Sbjct: 417 LYGKCGSIEDAHRLFDEMLFHDQVSWTALVTGYAQFGRAKETIDLFEKMLAKDVKPDGVT 476

Query: 169 WTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICD 228
           +  ++S   RAG VE+G   F  M                     K+  ++ I+    C 
Sbjct: 477 FIGVLSACSRAGFVEKGCSYFHSM--------------------QKDHGIVPIDDHYTC- 515

Query: 229 NGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVR-DEISWTSMID-----GYLSVGQ 281
                       MI+ Y R GRL+EA+     +P+  D I W +++      G + +GQ
Sbjct: 516 ------------MIDLYSRSGRLKEAEEFIKQMPMHPDAIGWGTLLSACRLRGDMEIGQ 562


>gi|119638460|gb|ABL85051.1| hypothetical protein 57h21.26 [Brachypodium sylvaticum]
          Length = 753

 Score =  331 bits (849), Expect = 7e-88,   Method: Compositional matrix adjust.
 Identities = 193/624 (30%), Positives = 320/624 (51%), Gaps = 64/624 (10%)

Query: 16  SSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVS 75
           S +T Y+  G +D  + +F  +   NV  +NA++SG + N R+ +ARR+F  MP RNVVS
Sbjct: 131 SLVTMYASCGVVDCLERVFDDVDSPNVALWNALVSGLVMNHRVGDARRVFNRMPARNVVS 190

Query: 76  WTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMP---- 131
           WTAM+ G      V +A +LF  MP +N VSW  M+ GL+   +  EA ++FNS+     
Sbjct: 191 WTAMVKGHVSVHDVGQAVELFNLMPVKNSVSWCVMIGGLVHCQQFREAVELFNSLMRNGD 250

Query: 132 -----------------------------------IKNVISWNAMIAGYVECCMMGEAIV 156
                                              + ++I   +++A Y     + EA +
Sbjct: 251 EVTNVILVKVVNAYAGLKSIGGGRCIHGFSVKSGFVHDLIIEASLVAMYCNSLDIDEARL 310

Query: 157 LFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKES 216
            F++M+ + V +W ++I GY  A +++E   +F  M  ++ VSW +MI G+  +G   ++
Sbjct: 311 EFDKMDRKQVGSWNAIIRGYIYAEKIDEAENIFESMTYRDKVSWNSMINGYIRDGRIADA 370

Query: 217 LLLFIEMKG------------ICDNGN------------NCNVQSCNSMINGYIRFGRLE 252
             L+ +M                DNG               +V SC +++ GY++ G L+
Sbjct: 371 TELYSKMPEKNVEAATALMSWFIDNGKLGKARDMFYSLPQVDVMSCTALLFGYMKEGYLD 430

Query: 253 EAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNEL 312
           +A +LF  +  R  +++  MI G+L  G+V+ AY LF+  P  DA   +  ++GL QN L
Sbjct: 431 DALDLFHRMHKRTAVTYNVMIAGFLHQGKVAEAYKLFNESPAHDATTCSCFVTGLAQNGL 490

Query: 313 FVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENC 372
             +A  L+ +M    +    +  S L       + I  G Q+H   +K   E  LI++N 
Sbjct: 491 IHDALKLYKKMLVSNMHTSESVVSSLISCCSHHSMIVHGLQLHATTIKLGFELYLIIQNS 550

Query: 373 LISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPN 432
           LIS+Y+KCG +  A NIF  MV RD+V+WN+++ G++ + L    +++F++M  +   P+
Sbjct: 551 LISLYSKCGEMVAAQNIFDQMVKRDVVTWNTLIHGYAFNSLGQNAIEMFKNMKIAQVDPD 610

Query: 433 SVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFV 492
            +TFLG+LSAC+H  L+      F+ M   Y I P   HY  M++LL R G ++EAE  +
Sbjct: 611 EITFLGVLSACNHMSLLEEAKHFFDVMTCDYGIAPNMMHYACMVDLLCRRGMVEEAEGLM 670

Query: 493 LRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRH 552
             +PFEPD  IW +LL +C    G+ ++AEHAA +L+ ++P     ++ L N++ +  + 
Sbjct: 671 KSMPFEPDSAIWTSLLSSCRL-SGSDKLAEHAASQLIAINPCTKMPYLHLINVHGSMDKW 729

Query: 553 VEEHKLRMDMGLKGVRKVPGCSWL 576
                LR  +      K  G SW+
Sbjct: 730 AVIDSLRSQITRSTTEKEVGYSWI 753



 Score =  196 bits (498), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 150/587 (25%), Positives = 265/587 (45%), Gaps = 90/587 (15%)

Query: 23  KRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPER----------- 71
           + G  D A+ +F  MP+R+VVS+N+ +S   ++G  + A  LF E+  R           
Sbjct: 37  RAGRPDAAREVFDGMPRRDVVSWNSAMSAHARSGAHAGAAGLFLELRRRGVRPDGTSLST 96

Query: 72  ----------------------------NVVSWTAMICGLADAGRVCEARKLFEEMPERN 103
                                       NV    +++   A  G V    ++F+++   N
Sbjct: 97  VLSACARLEALELGRCVHGLALRSCSTGNVFVGASLVTMYASCGVVDCLERVFDDVDSPN 156

Query: 104 VVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEE 163
           V  WN++V GL+ N  + +AR+VFN MP +NV+SW AM+ G+V    +G+A+ LF  M  
Sbjct: 157 VALWNALVSGLVMNHRVGDARRVFNRMPARNVVSWTAMVKGHVSVHDVGQAVELFNLMPV 216

Query: 164 RNVVTWTSMISGYCRAGEVEEGYCLFRRMPR-----KNVV---------SWTAMIGGFAW 209
           +N V+W  MI G     +  E   LF  + R      NV+            ++ GG   
Sbjct: 217 KNSVSWCVMIGGLVHCQQFREAVELFNSLMRNGDEVTNVILVKVVNAYAGLKSIGGGRCI 276

Query: 210 NGFHKESLL---LFIEMKGIC---------------DNGNNCNVQSCNSMINGYIRFGRL 251
           +GF  +S     L IE   +                D  +   V S N++I GYI   ++
Sbjct: 277 HGFSVKSGFVHDLIIEASLVAMYCNSLDIDEARLEFDKMDRKQVGSWNAIIRGYIYAEKI 336

Query: 252 EEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNE 311
           +EA+N+F+++  RD++SW SMI+GY+  G++++A  L+  MP+++  A TA++S  + N 
Sbjct: 337 DEAENIFESMTYRDKVSWNSMINGYIRDGRIADATELYSKMPEKNVEAATALMSWFIDNG 396

Query: 312 LFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILEN 371
              +A  +F  +    V    A              +DL  ++H        +   +  N
Sbjct: 397 KLGKARDMFYSLPQVDVMSCTALLFGYMKEGYLDDALDLFHRMH--------KRTAVTYN 448

Query: 372 CLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHP 431
            +I+ +   G +  AY +F+   + D  + +  V G + +GL ++ LK+++ ML S  H 
Sbjct: 449 VMIAGFLHQGKVAEAYKLFNESPAHDATTCSCFVTGLAQNGLIHDALKLYKKMLVSNMHT 508

Query: 432 NSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYV----SMINLLGRAGKIKE 487
           +      ++S CSH  ++  G +L         I+ G E Y+    S+I+L  + G++  
Sbjct: 509 SESVVSSLISCCSHHSMIVHGLQLH-----ATTIKLGFELYLIIQNSLISLYSKCGEMVA 563

Query: 488 AEEFVLRLPFEPDHRIWGALLGACGFCE-GNAEIAEHAAKRLLELDP 533
           A+    ++  + D   W  L+    F   G   I      ++ ++DP
Sbjct: 564 AQNIFDQM-VKRDVVTWNTLIHGYAFNSLGQNAIEMFKNMKIAQVDP 609



 Score =  155 bits (392), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 110/407 (27%), Positives = 203/407 (49%), Gaps = 24/407 (5%)

Query: 98  EMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVL 157
           E  +  VVS N ++   +R G  + AR+VF+ MP ++V+SWN+ ++ +        A  L
Sbjct: 19  EDDDGGVVSGNRLMGAHLRAGRPDAAREVFDGMPRRDVVSWNSAMSAHARSGAHAGAAGL 78

Query: 158 FEEMEERNV----VTWTSMISGYCRAGEVEEGYCL----FRRMPRKNVVSWTAMIGGFAW 209
           F E+  R V     + ++++S   R   +E G C+     R     NV    +++  +A 
Sbjct: 79  FLELRRRGVRPDGTSLSTVLSACARLEALELGRCVHGLALRSCSTGNVFVGASLVTMYAS 138

Query: 210 NGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISW 269
            G       +   ++ + D+ ++ NV   N++++G +   R+ +A+ +F+ +P R+ +SW
Sbjct: 139 CG-------VVDCLERVFDDVDSPNVALWNALVSGLVMNHRVGDARRVFNRMPARNVVSW 191

Query: 270 TSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVP 329
           T+M+ G++SV  V  A  LF+ MP +++V+W  MI GLV  + F EA  LF  +  +G  
Sbjct: 192 TAMVKGHVSVHDVGQAVELFNLMPVKNSVSWCVMIGGLVHCQQFREAVELFNSLMRNGDE 251

Query: 330 PLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNI 389
             N     +  A     +I  GR IH   +K+    DLI+E  L++MY     ID A   
Sbjct: 252 VTNVILVKVVNAYAGLKSIGGGRCIHGFSVKSGFVHDLIIEASLVAMYCNSLDIDEARLE 311

Query: 390 FSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLV 449
           F  M  + + SWN+++ G+ +    +E   +FESM    T+ + V++  +++     G +
Sbjct: 312 FDKMDRKQVGSWNAIIRGYIYAEKIDEAENIFESM----TYRDKVSWNSMINGYIRDGRI 367

Query: 450 SRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLP 496
           +   EL++ M      +   E   ++++     GK+ +A +    LP
Sbjct: 368 ADATELYSKM-----PEKNVEAATALMSWFIDNGKLGKARDMFYSLP 409



 Score = 43.5 bits (101), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 23/89 (25%), Positives = 40/89 (44%)

Query: 356 CVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLAN 415
           C     + +  ++  N L+  + + G  D A  +F  M  RD+VSWNS +   +  G   
Sbjct: 14  CCCPYEDDDGGVVSGNRLMGAHLRAGRPDAAREVFDGMPRRDVVSWNSAMSAHARSGAHA 73

Query: 416 ETLKVFESMLESGTHPNSVTFLGILSACS 444
               +F  +   G  P+  +   +LSAC+
Sbjct: 74  GAAGLFLELRRRGVRPDGTSLSTVLSACA 102


>gi|357507065|ref|XP_003623821.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498836|gb|AES80039.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 837

 Score =  331 bits (848), Expect = 7e-88,   Method: Compositional matrix adjust.
 Identities = 209/661 (31%), Positives = 342/661 (51%), Gaps = 82/661 (12%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWT 77
           + + SK G +++A+ LF  MPQ++  S+N M+S ++  GRL EAR LF+    ++ ++W+
Sbjct: 72  LNQLSKSGQVNDARKLFDKMPQKDEYSWNTMISSYVNVGRLVEARELFDGCSCKSSITWS 131

Query: 78  AMICGLADAGRVCEARKLFEEMP----ERNVVSWNSMV-----VGLIRNGELNEARKVFN 128
           ++I G    G   EA  LF  M     + +  +  S++     +GLI+ GE+     V N
Sbjct: 132 SIISGYCKFGCKVEAFDLFRSMRLEGWKASQFTLGSVLRVCSSLGLIQTGEMIHGFVVKN 191

Query: 129 SMPIKNVISWNAMIAGYVECCMMGEAIVLFE--EMEERNVVTWTSMISGYCRAGEVEEGY 186
                NV     ++  Y +C  + EA  LF+  E + +N V WT+M++GY + G+  +  
Sbjct: 192 GFE-GNVFVVTGLVDMYAKCKCVSEAEFLFKGLEFDRKNHVLWTAMVTGYAQNGDGYKAV 250

Query: 187 CLFRRMPRKNV-------------------------VSWTAMIGGFAWNGFHKESLLLFI 221
             FR M  + V                         V    +  GF  N + + +L+   
Sbjct: 251 EFFRYMHAQGVECNQYTFPTILTACSSVLARCFGEQVHGFIVKSGFGSNVYVQSALVDMY 310

Query: 222 EMKGICDNGNNC-------NVQSCNSMINGYIRFGRLEEAQNLFDTVPVR----DEISWT 270
              G   N  N        +V S NS++ G++R G  EEA  LF  +  R    D+ ++ 
Sbjct: 311 AKCGDLKNAKNMLETMEDDDVVSWNSLMVGFVRHGLEEEALRLFKNMHGRNMKIDDYTFP 370

Query: 271 S---------------------------------MIDGYLSVGQVSNAYYLFHNMPDRDA 297
           S                                 ++D Y   G +  AY +F  M ++D 
Sbjct: 371 SVLNCCVVGSINPKSVHGLIIKTGFENYKLVSNALVDMYAKTGDMDCAYTVFEKMLEKDV 430

Query: 298 VAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCV 357
           ++WT++++G  QN    E+  +F +MR  GV P     + +  A      ++ G+Q+H  
Sbjct: 431 ISWTSLVTGYAQNNSHEESLKIFCDMRVTGVNPDQFIVASILSACAELTLLEFGKQVHLD 490

Query: 358 LMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANET 417
            +K+       + N L++MYAKCG +D+A  IF +M  +D+++W ++++G++ +G    +
Sbjct: 491 FIKSGLRWSQSVYNSLVAMYAKCGCLDDADAIFVSMQVKDVITWTAIIVGYAQNGKGRNS 550

Query: 418 LKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMIN 477
           LK +++M+ SGT P+ +TF+G+L ACSHAGLV  G + F  M  VY I+PGPEHY  MI+
Sbjct: 551 LKFYDAMVSSGTRPDFITFIGLLFACSHAGLVDEGRKYFQQMNKVYGIKPGPEHYACMID 610

Query: 478 LLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAP 537
           L GR+GK+ EA++ + ++  +PD  +W +LL AC   E N E+AE AA  L EL+P+NA 
Sbjct: 611 LFGRSGKLDEAKQLLDQMDVKPDATVWKSLLSACRVHE-NLELAERAATNLFELEPMNAM 669

Query: 538 AHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAE 597
            +V+L N+Y+AS +  +  K+R  M  KG+ K PGCSWL  N  +  F+S D+   + AE
Sbjct: 670 PYVMLSNMYSASRKWNDVAKIRKLMKSKGIVKEPGCSWLEINSRVNTFISDDRGHPREAE 729

Query: 598 I 598
           I
Sbjct: 730 I 730



 Score =  128 bits (322), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 105/383 (27%), Positives = 179/383 (46%), Gaps = 59/383 (15%)

Query: 103 NVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEME 162
           ++   N ++  L ++G++N+ARK+F+ MP                               
Sbjct: 64  SIYQTNQLLNQLSKSGQVNDARKLFDKMP------------------------------- 92

Query: 163 ERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIE 222
           +++  +W +MIS Y   G + E   LF     K+ ++W+++I G+   G   E+  LF  
Sbjct: 93  QKDEYSWNTMISSYVNVGRLVEARELFDGCSCKSSITWSSIISGYCKFGCKVEAFDLFRS 152

Query: 223 MKGICDNGNNCNVQS----CNSMINGYIRFGRLEEA---QNLFDTVPVRDEISWTSMIDG 275
           M+      +   + S    C+S+  G I+ G +      +N F+     +    T ++D 
Sbjct: 153 MRLEGWKASQFTLGSVLRVCSSL--GLIQTGEMIHGFVVKNGFEG----NVFVVTGLVDM 206

Query: 276 YLSVGQVSNAYYLFHNMP-DR-DAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNA 333
           Y     VS A +LF  +  DR + V WTAM++G  QN    +A   F  M A GV     
Sbjct: 207 YAKCKCVSEAEFLFKGLEFDRKNHVLWTAMVTGYAQNGDGYKAVEFFRYMHAQGVECNQY 266

Query: 334 TFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNM 393
           TF  +  A  +      G Q+H  ++K+   S++ +++ L+ MYAKCG + NA N+   M
Sbjct: 267 TFPTILTACSSVLARCFGEQVHGFIVKSGFGSNVYVQSALVDMYAKCGDLKNAKNMLETM 326

Query: 394 VSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSAC---------S 444
              D+VSWNS+++GF  HGL  E L++F++M       +  TF  +L+ C          
Sbjct: 327 EDDDVVSWNSLMVGFVRHGLEEEALRLFKNMHGRNMKIDDYTFPSVLNCCVVGSINPKSV 386

Query: 445 HAGLVSRGWELF----NAMFDVY 463
           H  ++  G+E +    NA+ D+Y
Sbjct: 387 HGLIIKTGFENYKLVSNALVDMY 409



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 87/346 (25%), Positives = 162/346 (46%), Gaps = 17/346 (4%)

Query: 234 NVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMP 293
           ++   N ++N   + G++ +A+ LFD +P +DE SW +MI  Y++VG++  A  LF    
Sbjct: 64  SIYQTNQLLNQLSKSGQVNDARKLFDKMPQKDEYSWNTMISSYVNVGRLVEARELFDGCS 123

Query: 294 DRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQ 353
            + ++ W+++ISG  +    VEA  LF  MR  G      T   +     +   I  G  
Sbjct: 124 CKSSITWSSIISGYCKFGCKVEAFDLFRSMRLEGWKASQFTLGSVLRVCSSLGLIQTGEM 183

Query: 354 IHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMV--SRDLVSWNSMVMGFSHH 411
           IH  ++K   E ++ +   L+ MYAKC  +  A  +F  +    ++ V W +MV G++ +
Sbjct: 184 IHGFVVKNGFEGNVFVVTGLVDMYAKCKCVSEAEFLFKGLEFDRKNHVLWTAMVTGYAQN 243

Query: 412 GLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEH 471
           G   + ++ F  M   G   N  TF  IL+ACS       G ++      + K   G   
Sbjct: 244 GDGYKAVEFFRYMHAQGVECNQYTFPTILTACSSVLARCFGEQVHGF---IVKSGFGSNV 300

Query: 472 YV--SMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAE-----IAEHA 524
           YV  +++++  + G +K A+  +  +  + D   W +L+   GF     E     + ++ 
Sbjct: 301 YVQSALVDMYAKCGDLKNAKNMLETME-DDDVVSWNSLM--VGFVRHGLEEEALRLFKNM 357

Query: 525 AKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKV 570
             R +++D    P+ +  C + + + + V  H L +  G +  + V
Sbjct: 358 HGRNMKIDDYTFPSVLNCCVVGSINPKSV--HGLIIKTGFENYKLV 401



 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 72/316 (22%), Positives = 139/316 (43%), Gaps = 58/316 (18%)

Query: 11  VVHLTSSITKYSKRGFIDEAKALFQLMPQRNV---------------------------- 42
           VV   S +  + + G  +EA  LF+ M  RN+                            
Sbjct: 331 VVSWNSLMVGFVRHGLEEEALRLFKNMHGRNMKIDDYTFPSVLNCCVVGSINPKSVHGLI 390

Query: 43  ---------VSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEAR 93
                    +  NA++  + + G +  A  +FE+M E++V+SWT+++ G A      E+ 
Sbjct: 391 IKTGFENYKLVSNALVDMYAKTGDMDCAYTVFEKMLEKDVISWTSLVTGYAQNNSHEESL 450

Query: 94  KLFEEM------PERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISW-----NAMI 142
           K+F +M      P++ +V   + ++       L E  K  +   IK+ + W     N+++
Sbjct: 451 KIFCDMRVTGVNPDQFIV---ASILSACAELTLLEFGKQVHLDFIKSGLRWSQSVYNSLV 507

Query: 143 AGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRM----PRKNVV 198
           A Y +C  + +A  +F  M+ ++V+TWT++I GY + G+       +  M     R + +
Sbjct: 508 AMYAKCGCLDDADAIFVSMQVKDVITWTAIIVGYAQNGKGRNSLKFYDAMVSSGTRPDFI 567

Query: 199 SWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLF 258
           ++  ++   +  G   E    F +M  +          +C  MI+ + R G+L+EA+ L 
Sbjct: 568 TFIGLLFACSHAGLVDEGRKYFQQMNKVYGIKPGPEHYAC--MIDLFGRSGKLDEAKQLL 625

Query: 259 DTVPVR-DEISWTSMI 273
           D + V+ D   W S++
Sbjct: 626 DQMDVKPDATVWKSLL 641



 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 46/204 (22%), Positives = 101/204 (49%), Gaps = 29/204 (14%)

Query: 16  SSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEM----PER 71
           S +  Y+K G +D+A A+F  M  ++V+++ A++ G+ QNG+   + + ++ M       
Sbjct: 505 SLVAMYAKCGCLDDADAIFVSMQVKDVITWTAIIVGYAQNGKGRNSLKFYDAMVSSGTRP 564

Query: 72  NVVSWTAMICGLADAGRVCEARKLFEEM---------PERNVVSWNSMVVGLIRNGELNE 122
           + +++  ++   + AG V E RK F++M         PE     +  M+    R+G+L+E
Sbjct: 565 DFITFIGLLFACSHAGLVDEGRKYFQQMNKVYGIKPGPEH----YACMIDLFGRSGKLDE 620

Query: 123 ARKVFNSMPIK-NVISWNAMIAGYVECCMMGEAIVLFE-------EMEERNVVTWTSMIS 174
           A+++ + M +K +   W ++++     C + E + L E       E+E  N + +  + +
Sbjct: 621 AKQLLDQMDVKPDATVWKSLLSA----CRVHENLELAERAATNLFELEPMNAMPYVMLSN 676

Query: 175 GYCRAGEVEEGYCLFRRMPRKNVV 198
            Y  + +  +   + + M  K +V
Sbjct: 677 MYSASRKWNDVAKIRKLMKSKGIV 700


>gi|5803274|dbj|BAA83584.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|55296350|dbj|BAD68395.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|125596022|gb|EAZ35802.1| hypothetical protein OsJ_20095 [Oryza sativa Japonica Group]
          Length = 763

 Score =  331 bits (848), Expect = 7e-88,   Method: Compositional matrix adjust.
 Identities = 193/624 (30%), Positives = 318/624 (50%), Gaps = 64/624 (10%)

Query: 16  SSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVS 75
           S IT Y+  G +   + +   +   NV  +NA++SG + N R+  AR+ F+ MP RNVVS
Sbjct: 141 SLITMYANCGVVSCLEQVLDGVESPNVALWNALISGLVMNHRVGYARKAFDRMPVRNVVS 200

Query: 76  WTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSM----- 130
           WTAMI G   A  V  A +LF+ MP +N VSW  M+ G + + + +EA ++FNS+     
Sbjct: 201 WTAMIKGHFTAHEVDMAFQLFKLMPVKNSVSWCVMIGGFVTHEKFSEAVELFNSLMMNGE 260

Query: 131 PIKNVISWN----------------------------------AMIAGYVECCMMGEAIV 156
            + NVI                                     +++  Y +   + EA +
Sbjct: 261 EVTNVILVKIVNAFAGMKSIRGGRCIHGLAVKSGFAYDLVLEASLVLMYCKSLDITEARL 320

Query: 157 LFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKES 216
            F++ME  +V +W +M+ GY  + +++E   LF  M  ++ +SW +MI G+  +G   ++
Sbjct: 321 EFDKMEGNHVGSWNAMLCGYIYSDKIDEARKLFDSMNNRDKISWNSMINGYINDGRIADA 380

Query: 217 LLLFIEMK-----------------GICDNGNN-------CNVQSCNSMINGYIRFGRLE 252
             L+ +M                  G+ D   +        +V SC +++ GY++ G ++
Sbjct: 381 TELYSKMTEKSLEAATALMSWFIDNGMLDKARDMFYNMPQIDVMSCTTLLFGYVKGGHMD 440

Query: 253 EAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNEL 312
           +A +LF  +  R  +++  MI G    G+++ AY LF+  P RD+V W+ +++GL  N L
Sbjct: 441 DALDLFHMMQKRTVVTYNVMISGLFHQGKITEAYKLFNESPTRDSVTWSCLVAGLATNGL 500

Query: 313 FVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENC 372
             EA   + +M    + P  +  S L       + +  G+Q H   +K   +S L+++N 
Sbjct: 501 IHEALQFYKKMLLSNIRPSESVVSSLISCLSNYSMMVHGQQFHATTIKIGLDSHLLIQNS 560

Query: 373 LISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPN 432
           LIS+Y KCG +  A +IF  M  RD V+WN+++ G++ + L    +++FESM ++   P+
Sbjct: 561 LISLYCKCGEMIIAQSIFDLMAKRDKVTWNTIIHGYALNNLGQNAVEMFESMTKAQVDPD 620

Query: 433 SVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFV 492
            +TFLG+LSAC+H  L+      FNAM   Y I P   HY  M++L  R   IKEAE  V
Sbjct: 621 DITFLGVLSACNHMSLLEEAKYFFNAMTCTYGILPNIMHYACMVDLFCRKCMIKEAEGLV 680

Query: 493 LRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRH 552
             +PFEPD  IW +LL  C    GN ++AEHAA +L+ +DP     ++ L +++  + + 
Sbjct: 681 KSMPFEPDSAIWTSLLSGCRL-TGNDKLAEHAASQLIAIDPCTKMPYLHLISVHGLTNKS 739

Query: 553 VEEHKLRMDMGLKGVRKVPGCSWL 576
                LR  +      K  G SW+
Sbjct: 740 TVIDSLRSQIKSTATEKDVGYSWI 763



 Score =  161 bits (407), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 137/518 (26%), Positives = 231/518 (44%), Gaps = 61/518 (11%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEM------PER 71
           + ++ + G ++ A+ +F  MP+R+VVS+N +++   + G    A   F EM      P+ 
Sbjct: 42  MAEHLRAGRLEAAREVFDGMPRRDVVSWNTIMAVQARAGSHGRAVGAFLEMRRQGFRPDH 101

Query: 72  NVVSWTAMICGLADA---GRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFN 128
              S     C   +A   GR C    +F+     NV    S++      G ++   +V +
Sbjct: 102 TSFSTALSACARLEALEMGR-CVHGLVFKSCSSGNVFVGASLITMYANCGVVSCLEQVLD 160

Query: 129 SMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCL 188
            +   NV  WNA+I+G V    +G A   F+ M  RNVV+WT+MI G+  A EV+  + L
Sbjct: 161 GVESPNVALWNALISGLVMNHRVGYARKAFDRMPVRNVVSWTAMIKGHFTAHEVDMAFQL 220

Query: 189 FRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGY--- 245
           F+ MP KN VSW  MIGGF  +    E++ LF     +  NG          ++N +   
Sbjct: 221 FKLMPVKNSVSWCVMIGGFVTHEKFSEAVELF---NSLMMNGEEVTNVILVKIVNAFAGM 277

Query: 246 --IRFGR------------------------------LEEAQNLFDTVPVRDEISWTSMI 273
             IR GR                              + EA+  FD +      SW +M+
Sbjct: 278 KSIRGGRCIHGLAVKSGFAYDLVLEASLVLMYCKSLDITEARLEFDKMEGNHVGSWNAML 337

Query: 274 DGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNA 333
            GY+   ++  A  LF +M +RD ++W +MI+G + +    +AT L+ +M    +    A
Sbjct: 338 CGYIYSDKIDEARKLFDSMNNRDKISWNSMINGYINDGRIADATELYSKMTEKSLEAATA 397

Query: 334 TFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNM 393
             S           +D  R     +     + D++    L+  Y K G +D+A ++F  M
Sbjct: 398 LMSWFID----NGMLDKARD----MFYNMPQIDVMSCTTLLFGYVKGGHMDDALDLFHMM 449

Query: 394 VSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGW 453
             R +V++N M+ G  H G   E  K+F    ES T  +SVT+  +++  +  GL+    
Sbjct: 450 QKRTVVTYNVMISGLFHQGKITEAYKLFN---ESPTR-DSVTWSCLVAGLATNGLIHEAL 505

Query: 454 ELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEF 491
           + +  M  +  I+P      S+I+ L     +   ++F
Sbjct: 506 QFYKKML-LSNIRPSESVVSSLISCLSNYSMMVHGQQF 542



 Score =  150 bits (378), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 107/397 (26%), Positives = 193/397 (48%), Gaps = 24/397 (6%)

Query: 108 NSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNV- 166
           N ++   +R G L  AR+VF+ MP ++V+SWN ++A        G A+  F EM  +   
Sbjct: 39  NRLMAEHLRAGRLEAAREVFDGMPRRDVVSWNTIMAVQARAGSHGRAVGAFLEMRRQGFR 98

Query: 167 ---VTWTSMISGYCRAGEVEEGYCL----FRRMPRKNVVSWTAMIGGFAWNGFHKESLLL 219
               ++++ +S   R   +E G C+    F+     NV    ++I  +A  G       +
Sbjct: 99  PDHTSFSTALSACARLEALEMGRCVHGLVFKSCSSGNVFVGASLITMYANCG-------V 151

Query: 220 FIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSV 279
              ++ + D   + NV   N++I+G +   R+  A+  FD +PVR+ +SWT+MI G+ + 
Sbjct: 152 VSCLEQVLDGVESPNVALWNALISGLVMNHRVGYARKAFDRMPVRNVVSWTAMIKGHFTA 211

Query: 280 GQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLF 339
            +V  A+ LF  MP +++V+W  MI G V +E F EA  LF  +  +G    N     + 
Sbjct: 212 HEVDMAFQLFKLMPVKNSVSWCVMIGGFVTHEKFSEAVELFNSLMMNGEEVTNVILVKIV 271

Query: 340 GAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLV 399
            A     +I  GR IH + +K+    DL+LE  L+ MY K   I  A   F  M    + 
Sbjct: 272 NAFAGMKSIRGGRCIHGLAVKSGFAYDLVLEASLVLMYCKSLDITEARLEFDKMEGNHVG 331

Query: 400 SWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAM 459
           SWN+M+ G+ +    +E  K+F+SM     + + +++  +++   + G ++   EL++ M
Sbjct: 332 SWNAMLCGYIYSDKIDEARKLFDSM----NNRDKISWNSMINGYINDGRIADATELYSKM 387

Query: 460 FDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLP 496
                 +   E   ++++     G + +A +    +P
Sbjct: 388 -----TEKSLEAATALMSWFIDNGMLDKARDMFYNMP 419



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 81/284 (28%), Positives = 145/284 (51%), Gaps = 15/284 (5%)

Query: 5   NHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRL 64
           N P+  V+  T+ +  Y K G +D+A  LF +M +R VV+YN M+SG    G+++EA +L
Sbjct: 417 NMPQIDVMSCTTLLFGYVKGGHMDDALDLFHMMQKRTVVTYNVMISGLFHQGKITEAYKL 476

Query: 65  FEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLI---RNGELN 121
           F E P R+ V+W+ ++ GLA  G + EA + +++M   N+    S+V  LI    N  + 
Sbjct: 477 FNESPTRDSVTWSCLVAGLATNGLIHEALQFYKKMLLSNIRPSESVVSSLISCLSNYSMM 536

Query: 122 EARKVFNSMPIK-----NVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGY 176
              + F++  IK     +++  N++I+ Y +C  M  A  +F+ M +R+ VTW ++I GY
Sbjct: 537 VHGQQFHATTIKIGLDSHLLIQNSLISLYCKCGEMIIAQSIFDLMAKRDKVTWNTIIHGY 596

Query: 177 CRAGEVEEGYCLFRRMPRKNV----VSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNN 232
                 +    +F  M +  V    +++  ++         +E+   F  M   C  G  
Sbjct: 597 ALNNLGQNAVEMFESMTKAQVDPDDITFLGVLSACNHMSLLEEAKYFFNAMT--CTYGIL 654

Query: 233 CNVQSCNSMINGYIRFGRLEEAQNLFDTVPVR-DEISWTSMIDG 275
            N+     M++ + R   ++EA+ L  ++P   D   WTS++ G
Sbjct: 655 PNIMHYACMVDLFCRKCMIKEAEGLVKSMPFEPDSAIWTSLLSG 698



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 57/233 (24%), Positives = 99/233 (42%), Gaps = 35/233 (15%)

Query: 227 CDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAY 286
           C +     V   N ++  ++R GRLE A+ +FD +P RD +SW +++             
Sbjct: 27  CSSDAAAVVSGNNRLMAEHLRAGRLEAAREVFDGMPRRDVVSWNTIM------------- 73

Query: 287 YLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATA 346
                     AV   A   G         A   F+EMR  G  P + +FS    A     
Sbjct: 74  ----------AVQARAGSHG--------RAVGAFLEMRRQGFRPDHTSFSTALSACARLE 115

Query: 347 NIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVM 406
            +++GR +H ++ K+ S  ++ +   LI+MYA CGV+     +   + S ++  WN+++ 
Sbjct: 116 ALEMGRCVHGLVFKSCSSGNVFVGASLITMYANCGVVSCLEQVLDGVESPNVALWNALIS 175

Query: 407 GFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAM 459
           G   +       K F+ M       N V++  ++     A  V   ++LF  M
Sbjct: 176 GLVMNHRVGYARKAFDRM----PVRNVVSWTAMIKGHFTAHEVDMAFQLFKLM 224


>gi|225425015|ref|XP_002267613.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930 [Vitis vinifera]
 gi|297738214|emb|CBI27415.3| unnamed protein product [Vitis vinifera]
          Length = 743

 Score =  331 bits (848), Expect = 8e-88,   Method: Compositional matrix adjust.
 Identities = 191/592 (32%), Positives = 326/592 (55%), Gaps = 13/592 (2%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWT 77
           IT Y K G +  A  +F  +PQ N+ S+N +LS + + G LS+ +++F  MP R+ VSW 
Sbjct: 47  ITAYYKLGNLAYAHHVFDHIPQPNLFSWNTILSVYSKLGLLSQMQQIFNLMPFRDGVSWN 106

Query: 78  AMICGLADAGRVCEARKLFEEMPER-----NVVSWNSMVVGLIRNGELNEARKVFNSMPI 132
             I G A+ G   +A ++++ M +      N +++++M++   +   ++  R++ N   +
Sbjct: 107 LAISGYANYGSCSDAVRVYKLMLKDAAMNLNRITFSTMLILCSKFRCVDLGRQI-NGQIL 165

Query: 133 K-----NVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYC 187
           K     +V   + ++  Y +  ++ +A   F+EM ERNVV   +MI+G  R G +EE   
Sbjct: 166 KFGFGSDVFVGSPLVDMYTKLGLIYDAKRYFDEMPERNVVMCNTMITGLMRCGMIEESQR 225

Query: 188 LFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIR 247
           LF  +  ++ +SWT MI G   NG  +E+L +F EM+      +     S  +     + 
Sbjct: 226 LFCGLKERDSISWTIMITGLMQNGLEREALDMFREMRLAGFAMDQFTFGSVLTACGSLLA 285

Query: 248 FGRLEEAQNLFDTVPVRDEI-SWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISG 306
            G  ++          +D +   ++++D Y     + +A  +F  MP ++ ++WTAM+ G
Sbjct: 286 LGEGKQIHAYVIRTDHKDNVFVGSALVDMYSKCRSIKSAETVFKRMPQKNVISWTAMLVG 345

Query: 307 LVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESD 366
             QN    EA  +F EM+ +GV P + T   +  +    A+++ G Q HC  + +   S 
Sbjct: 346 YGQNGFSEEAVKIFFEMQRNGVEPDDFTLGSVISSCANLASLEEGAQFHCRALVSGLISF 405

Query: 367 LILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLE 426
           + + N LI++Y KCG  +N++ +F+ M  RD VSW +++ G++  G ANET+ +FE ML 
Sbjct: 406 ITVSNALITLYGKCGSTENSHRLFTEMNIRDEVSWTALLAGYAQFGKANETIGLFERMLA 465

Query: 427 SGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIK 486
            G  P+ VTF+G+LSACS AGLV +G + F +M   + I P  +H   +I+LLGRAG+++
Sbjct: 466 HGLKPDGVTFIGVLSACSRAGLVEKGLQYFESMIKEHGIMPIVDHCTCIIDLLGRAGRLE 525

Query: 487 EAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIY 546
           EA  F+  +P  PD   W  LL +C    G+ EI + AA  L+ L+P N  ++V+L ++Y
Sbjct: 526 EARNFINNMPCHPDVVGWATLLSSCRV-HGDMEIGKWAADSLIALEPQNPASYVLLSSLY 584

Query: 547 AASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
           A+ G+  +  +LR  M  K VRK PG SW+   G + +F + D+    + +I
Sbjct: 585 ASKGKWDKVAQLRRGMRDKRVRKEPGYSWIKYKGKVHVFSADDQSSPFLGQI 636



 Score =  112 bits (281), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 87/344 (25%), Positives = 147/344 (42%), Gaps = 45/344 (13%)

Query: 239 NSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAV 298
           N++I  Y + G L  A ++FD +P  +  SW +++  Y  +G +S    +F+ MP RD V
Sbjct: 44  NNLITAYYKLGNLAYAHHVFDHIPQPNLFSWNTILSVYSKLGLLSQMQQIFNLMPFRDGV 103

Query: 299 AWTAMISGLVQNELFVEATYLFMEMRAHGVPPLN-ATFSVLFGAAGATANIDLGRQIHCV 357
           +W   ISG        +A  ++  M       LN  TFS +         +DLGRQI+  
Sbjct: 104 SWNLAISGYANYGSCSDAVRVYKLMLKDAAMNLNRITFSTMLILCSKFRCVDLGRQINGQ 163

Query: 358 LMKTESESDLILENCLISMYAK-------------------------------CGVIDNA 386
           ++K    SD+ + + L+ MY K                               CG+I+ +
Sbjct: 164 ILKFGFGSDVFVGSPLVDMYTKLGLIYDAKRYFDEMPERNVVMCNTMITGLMRCGMIEES 223

Query: 387 YNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHA 446
             +F  +  RD +SW  M+ G   +GL  E L +F  M  +G   +  TF  +L+AC   
Sbjct: 224 QRLFCGLKERDSISWTIMITGLMQNGLEREALDMFREMRLAGFAMDQFTFGSVLTACGSL 283

Query: 447 GLVSRGWELFNAMFDVYKIQPGPEHYV----SMINLLGRAGKIKEAEEFVLRLPFEPDHR 502
             +  G ++       Y I+   +  V    +++++  +   IK AE    R+P + +  
Sbjct: 284 LALGEGKQI-----HAYVIRTDHKDNVFVGSALVDMYSKCRSIKSAETVFKRMP-QKNVI 337

Query: 503 IWGALL---GACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLC 543
            W A+L   G  GF E   +I     +  +E D     + +  C
Sbjct: 338 SWTAMLVGYGQNGFSEEAVKIFFEMQRNGVEPDDFTLGSVISSC 381



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 90/356 (25%), Positives = 153/356 (42%), Gaps = 90/356 (25%)

Query: 1   MSERNHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSE 60
           M ERN     VV   + IT   + G I+E++ LF  + +R+ +S+  M++G +QNG   E
Sbjct: 199 MPERN-----VVMCNTMITGLMRCGMIEESQRLFCGLKERDSISWTIMITGLMQNGLERE 253

Query: 61  ARRLFEEMP---------------------------------------ERNVVSWTAMIC 81
           A  +F EM                                        + NV   +A++ 
Sbjct: 254 ALDMFREMRLAGFAMDQFTFGSVLTACGSLLALGEGKQIHAYVIRTDHKDNVFVGSALVD 313

Query: 82  GLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMP---------- 131
             +    +  A  +F+ MP++NV+SW +M+VG  +NG   EA K+F  M           
Sbjct: 314 MYSKCRSIKSAETVFKRMPQKNVISWTAMLVGYGQNGFSEEAVKIFFEMQRNGVEPDDFT 373

Query: 132 -------------------------IKNVISW----NAMIAGYVECCMMGEAIVLFEEME 162
                                    +  +IS+    NA+I  Y +C     +  LF EM 
Sbjct: 374 LGSVISSCANLASLEEGAQFHCRALVSGLISFITVSNALITLYGKCGSTENSHRLFTEMN 433

Query: 163 ERNVVTWTSMISGYCRAGEVEEGYCLFRRM----PRKNVVSWTAMIGGFAWNGFHKESLL 218
            R+ V+WT++++GY + G+  E   LF RM     + + V++  ++   +  G  ++ L 
Sbjct: 434 IRDEVSWTALLAGYAQFGKANETIGLFERMLAHGLKPDGVTFIGVLSACSRAGLVEKGLQ 493

Query: 219 LFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVR-DEISWTSMI 273
            F  M  I ++G    V  C  +I+   R GRLEEA+N  + +P   D + W +++
Sbjct: 494 YFESM--IKEHGIMPIVDHCTCIIDLLGRAGRLEEARNFINNMPCHPDVVGWATLL 547



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 43/196 (21%), Positives = 89/196 (45%), Gaps = 37/196 (18%)

Query: 335 FSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLI-------------------- 374
           ++ L      + N    +++HC+++KT  + +  L N LI                    
Sbjct: 8   YASLLKLCCESQNQTQAKKLHCLILKTIKQPETFLSNNLITAYYKLGNLAYAHHVFDHIP 67

Query: 375 -----------SMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFES 423
                      S+Y+K G++     IF+ M  RD VSWN  + G++++G  ++ ++V++ 
Sbjct: 68  QPNLFSWNTILSVYSKLGLLSQMQQIFNLMPFRDGVSWNLAISGYANYGSCSDAVRVYKL 127

Query: 424 ML-ESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVS--MINLLG 480
           ML ++  + N +TF  +L  CS    V  G ++      + K   G + +V   ++++  
Sbjct: 128 MLKDAAMNLNRITFSTMLILCSKFRCVDLGRQING---QILKFGFGSDVFVGSPLVDMYT 184

Query: 481 RAGKIKEAEEFVLRLP 496
           + G I +A+ +   +P
Sbjct: 185 KLGLIYDAKRYFDEMP 200


>gi|147836314|emb|CAN59994.1| hypothetical protein VITISV_012660 [Vitis vinifera]
          Length = 768

 Score =  331 bits (848), Expect = 8e-88,   Method: Compositional matrix adjust.
 Identities = 210/659 (31%), Positives = 336/659 (50%), Gaps = 81/659 (12%)

Query: 9   SLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEM 68
           S ++    +I+ Y+K+  +D A+ LF  MPQR VVS+N M+S + ++GR SEA  L   M
Sbjct: 70  SEIISTNIAISNYAKQSKLDVARQLFDQMPQRTVVSWNTMISSYSKHGRFSEALFLVYSM 129

Query: 69  PERN----------VVSWTAMICGLADAGRV-CEARKLFEEMPERNVVSWNSMVVGLIRN 117
              +          V+S  A +  L D   + C   K   E  E   +  ++++      
Sbjct: 130 HRSHMKLSESTFSSVLSVCARLRCLRDGKLIHCLVLKSGSESFE---LVGSALLYFYASC 186

Query: 118 GELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYC 177
            E+ EAR+VF+ +  +N + W+ M+ GYV C +M +A+ +F +M  R+VV WT++ISG+ 
Sbjct: 187 FEIGEARRVFDVLVRRNEVLWSLMLVGYVTCNVMDDALSVFVKMPRRDVVAWTTLISGFS 246

Query: 178 -----------------RAGEVEEGY----CLFRRMPRKNVVSWTAMIGGFAWN-GFHKE 215
                            R+GE         C+ R   R  ++S    + G     G   +
Sbjct: 247 KNGDGCGKALEMFRLMMRSGETTPNEFTFDCVVRACGRLGILSVGRTVHGLLMKCGLEYD 306

Query: 216 SLL------LFIEMKGICDNGNNCN--VQSC----NSMINGYIRFGRLEEAQNLFDTVPV 263
             +       + E + I D    C   V  C    NS+I G I  GR+E+A+ +F+ +  
Sbjct: 307 PSIGGALVEFYCECEAIDDALRVCKGVVNPCLNALNSLIEGLISMGRIEDAELVFNGMTE 366

Query: 264 RDEISWTSMIDGYLSVGQVSNAYYLFHNMP------------------------------ 293
            + +S+  MI GY   GQ+ ++  LF  MP                              
Sbjct: 367 MNPVSYNLMIKGYAVGGQMDDSKRLFEKMPCRTIFSSNTMISVYSRNGEIDKALELFEET 426

Query: 294 --DRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLG 351
             ++D V W +MISG + +    EA  L++ M    +    +TFS LF A     ++  G
Sbjct: 427 KNEKDPVTWNSMISGYIHSGQPEEALKLYITMHRLSIQQTRSTFSALFHACSCLGSLQQG 486

Query: 352 RQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHH 411
           + +H  L+KT  ES++ +   LI MY+KCG I  A   F ++ S ++ +W +++ G ++H
Sbjct: 487 QLLHAHLIKTPFESNVYVGTSLIDMYSKCGSIMEAQTSFVSIFSPNVAAWTALINGHAYH 546

Query: 412 GLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEH 471
           GL +E + +F+ M+E G  PN  TF+G+LSACS AGLV+ G ++F++M   Y + P  EH
Sbjct: 547 GLGSEAISLFDXMIEQGLAPNGATFVGVLSACSRAGLVNEGMKIFHSMERCYSVTPTLEH 606

Query: 472 YVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLEL 531
           Y  +++LLGR+G I+EAEEF+ ++P E D  +WGALL AC F   + E+ E  A+++   
Sbjct: 607 YACVVDLLGRSGHIREAEEFIKKMPLEADGVVWGALLSACWFWM-DLEVGERVAEKMFSF 665

Query: 532 DPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDK 590
           DP    ++V+L NIYA  GR  E+  +R  +    V+K PGCSW+  N  I +F   D+
Sbjct: 666 DPKPISSYVILSNIYAGLGRWREKMMVRKILRGFKVKKDPGCSWIELNNKIHVFSIEDR 724



 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 115/467 (24%), Positives = 210/467 (44%), Gaps = 59/467 (12%)

Query: 132 IKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRR 191
           +  +IS N  I+ Y +   +  A  LF++M +R VV+W +MIS Y + G   E   L   
Sbjct: 69  LSEIISTNIAISNYAKQSKLDVARQLFDQMPQRTVVSWNTMISSYSKHGRFSEALFLVYS 128

Query: 192 MPRKNV----VSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIR 247
           M R ++     ++++++   A     ++  L+      +  +G+       ++++  Y  
Sbjct: 129 MHRSHMKLSESTFSSVLSVCARLRCLRDGKLIHCL---VLKSGSESFELVGSALLYFYAS 185

Query: 248 FGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGL 307
              + EA+ +FD +  R+E+ W+ M+ GY++   + +A  +F  MP RD VAWT +ISG 
Sbjct: 186 CFEIGEARRVFDVLVRRNEVLWSLMLVGYVTCNVMDDALSVFVKMPRRDVVAWTTLISGF 245

Query: 308 VQN-ELFVEATYLF-MEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESES 365
            +N +   +A  +F + MR+    P   TF  +  A G    + +GR +H +LMK   E 
Sbjct: 246 SKNGDGCGKALEMFRLMMRSGETTPNEFTFDCVVRACGRLGILSVGRTVHGLLMKCGLEY 305

Query: 366 DLILENCLISMYAKCGVIDNAYN-------------------------------IFSNMV 394
           D  +   L+  Y +C  ID+A                                 +F+ M 
Sbjct: 306 DPSIGGALVEFYCECEAIDDALRVCKGVVNPCLNALNSLIEGLISMGRIEDAELVFNGMT 365

Query: 395 SRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLG--ILSACSHAGLVSRG 452
             + VS+N M+ G++  G  +++ ++FE M      P    F    ++S  S  G + + 
Sbjct: 366 EMNPVSYNLMIKGYAVGGQMDDSKRLFEKM------PCRTIFSSNTMISVYSRNGEIDKA 419

Query: 453 WELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVL---RLPFEPDHRIWGALLG 509
            ELF       K +  P  + SMI+    +G+ +EA +  +   RL  +     + AL  
Sbjct: 420 LELFEET----KNEKDPVTWNSMISGYIHSGQPEEALKLYITMHRLSIQQTRSTFSALFH 475

Query: 510 ACGFCEGNAEIAEHAAKRLLELDPLNAPAHV--VLCNIYAASGRHVE 554
           AC  C G+ +  +     L++  P  +  +V   L ++Y+  G  +E
Sbjct: 476 ACS-CLGSLQQGQLLHAHLIK-TPFESNVYVGTSLIDMYSKCGSIME 520



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 61/230 (26%), Positives = 110/230 (47%), Gaps = 10/230 (4%)

Query: 229 NGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYL 288
             N   + S N  I+ Y +  +L+ A+ LFD +P R  +SW +MI  Y   G+ S A +L
Sbjct: 66  QSNLSEIISTNIAISNYAKQSKLDVARQLFDQMPQRTVVSWNTMISSYSKHGRFSEALFL 125

Query: 289 FHNMPDR----DAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGA 344
            ++M           +++++S   +     +   +   +   G        S L     +
Sbjct: 126 VYSMHRSHMKLSESTFSSVLSVCARLRCLRDGKLIHCLVLKSGSESFELVGSALLYFYAS 185

Query: 345 TANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSM 404
              I   R++  VL++       +L + ++  Y  C V+D+A ++F  M  RD+V+W ++
Sbjct: 186 CFEIGEARRVFDVLVRRNE----VLWSLMLVGYVTCNVMDDALSVFVKMPRRDVVAWTTL 241

Query: 405 VMGFSHHGLA-NETLKVFESMLESG-THPNSVTFLGILSACSHAGLVSRG 452
           + GFS +G    + L++F  M+ SG T PN  TF  ++ AC   G++S G
Sbjct: 242 ISGFSKNGDGCGKALEMFRLMMRSGETTPNEFTFDCVVRACGRLGILSVG 291


>gi|328774761|gb|AEB39780.1| pentatricopeptide repeat protein 45 [Funaria hygrometrica]
          Length = 1097

 Score =  330 bits (847), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 209/631 (33%), Positives = 321/631 (50%), Gaps = 58/631 (9%)

Query: 21  YSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERN-------- 72
           Y+K G ID+A+ +F  M +R++ S+  M+ G  Q+GR  EA  LF +M +RN        
Sbjct: 365 YAKSGSIDDARVVFDGMTERDIFSWTVMIGGLAQHGRGQEAFSLFLQM-QRNGCLPNLTT 423

Query: 73  --------------VVSWT--------------------AMICGLADAGRVCEARKLFEE 98
                          + W                     A+I   A  G + +AR +F+ 
Sbjct: 424 YLSILNASAIASTSALEWVKVVHKHAEEAGFISDLRIGNALIHMYAKCGSIDDARLVFDG 483

Query: 99  MPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLF 158
           M +R+V+SWN+M+ GL +NG  +EA  VF  M  + ++  +      +      +A+   
Sbjct: 484 MCDRDVISWNAMMGGLAQNGCGHEAFTVFLQMQQEGLVPDSTTYLSLLNTHGSTDALEWV 543

Query: 159 EEMEERNVVTW--------TSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWN 210
            E+ +  V T         ++ I  Y R G +++   LF ++  ++V +W AMIGG A  
Sbjct: 544 NEVHKHAVETGLISDFRVGSAFIHMYIRCGSIDDARLLFDKLSVRHVTTWNAMIGGAAQQ 603

Query: 211 GFHKESLLLFIEMKG---ICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEI 267
              +E+L LF++M+    I D     N+ S N           ++E  +      + D  
Sbjct: 604 RCGREALSLFLQMQREGFIPDATTFINILSANVDEEA---LEWVKEVHSHATDAGLVDLR 660

Query: 268 SWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHG 327
              +++  Y   G V  A  +F +M +R+   WT MI GL Q+    +A   F++M   G
Sbjct: 661 VGNALVHTYSKCGNVKYAKQVFDDMVERNVTTWTMMIGGLAQHGCGHDAFSHFLQMLREG 720

Query: 328 VPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAY 387
           + P   T+  +  A  +T  ++  +++H   +     SDL + N L+ MYAKCG ID+A 
Sbjct: 721 IVPDATTYVSILSACASTGALEWVKEVHNHAVSAGLVSDLRVGNALVHMYAKCGSIDDAR 780

Query: 388 NIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAG 447
           ++F +MV RD+ SW  M+ G + HG   E L  F  M   G  PN  +++ +L+ACSHAG
Sbjct: 781 SVFDDMVERDVFSWTVMIGGLAQHGRGLEALDFFVKMKSEGFKPNGYSYVAVLTACSHAG 840

Query: 448 LVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGAL 507
           LV  G   F +M   Y I+P  EHY  M++LLGRAG ++EAE F+L +P EPD   WGAL
Sbjct: 841 LVDEGRRQFLSMTQDYGIEPTMEHYTCMVDLLGRAGLLEEAELFILNMPIEPDDAPWGAL 900

Query: 508 LGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGV 567
           LGAC    GN E+AE AAK  L+L P +A  +V+L NIYAA+G+  ++  +R  M  KG+
Sbjct: 901 LGAC-VTYGNLEMAEFAAKERLKLKPKSASTYVLLSNIYAATGKWEQKLLVRSMMQRKGI 959

Query: 568 RKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
           RK PG SW+  +  I  F+ GD    +  EI
Sbjct: 960 RKEPGRSWIEVDNRIHSFVVGDTSHPESKEI 990



 Score =  180 bits (457), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 146/591 (24%), Positives = 253/591 (42%), Gaps = 123/591 (20%)

Query: 39  QRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEE 98
           Q +V    A+++ +++ G + +A+ +F++M ERNV+SWT MI GLA  GR  EA  LF +
Sbjct: 251 QSDVRVETALVNMYVKCGSIEDAQLIFDKMVERNVISWTVMIGGLAHYGRGQEAFHLFLQ 310

Query: 99  MPERNVV-------------------SW--------------------NSMVVGLIRNGE 119
           M     +                    W                    N++V    ++G 
Sbjct: 311 MQREGFIPNSYTYVSILNANASAGALEWVKEVHSHAVNAGLALDLRVGNALVHMYAKSGS 370

Query: 120 LNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEER----NVVTWTSMISG 175
           +++AR VF+ M  +++ SW  MI G  +     EA  LF +M+      N+ T+ S+++ 
Sbjct: 371 IDDARVVFDGMTERDIFSWTVMIGGLAQHGRGQEAFSLFLQMQRNGCLPNLTTYLSILNA 430

Query: 176 -------------------------------------YCRAGEVEEGYCLFRRMPRKNVV 198
                                                Y + G +++   +F  M  ++V+
Sbjct: 431 SAIASTSALEWVKVVHKHAEEAGFISDLRIGNALIHMYAKCGSIDDARLVFDGMCDRDVI 490

Query: 199 SWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEA---- 254
           SW AM+GG A NG   E+  +F++M+     G   +  +  S++N +     LE      
Sbjct: 491 SWNAMMGGLAQNGCGHEAFTVFLQMQ---QEGLVPDSTTYLSLLNTHGSTDALEWVNEVH 547

Query: 255 QNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFV 314
           ++  +T  + D    ++ I  Y+  G + +A  LF  +  R    W AMI G  Q     
Sbjct: 548 KHAVETGLISDFRVGSAFIHMYIRCGSIDDARLLFDKLSVRHVTTWNAMIGGAAQQRCGR 607

Query: 315 EATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLI 374
           EA  LF++M+  G  P   TF  +  A      ++  +++H          DL + N L+
Sbjct: 608 EALSLFLQMQREGFIPDATTFINILSANVDEEALEWVKEVHSHATDA-GLVDLRVGNALV 666

Query: 375 SMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSV 434
             Y+KCG +  A  +F +MV R++ +W  M+ G + HG  ++    F  ML  G  P++ 
Sbjct: 667 HTYSKCGNVKYAKQVFDDMVERNVTTWTMMIGGLAQHGCGHDAFSHFLQMLREGIVPDAT 726

Query: 435 TFLGILSACS----------------HAGLVSRGWELFNAMFDVYK-------------- 464
           T++ ILSAC+                 AGLVS    + NA+  +Y               
Sbjct: 727 TYVSILSACASTGALEWVKEVHNHAVSAGLVS-DLRVGNALVHMYAKCGSIDDARSVFDD 785

Query: 465 -IQPGPEHYVSMINLLGRAGKIKEAEEFVLRLP---FEPDHRIWGALLGAC 511
            ++     +  MI  L + G+  EA +F +++    F+P+   + A+L AC
Sbjct: 786 MVERDVFSWTVMIGGLAQHGRGLEALDFFVKMKSEGFKPNGYSYVAVLTAC 836



 Score =  168 bits (425), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 118/425 (27%), Positives = 213/425 (50%), Gaps = 62/425 (14%)

Query: 39  QRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEE 98
           ++N+   N +L  +++ GRL  AR++F+++ ++N+  WT MI G A+ G   +A +++++
Sbjct: 150 EQNLYVANKLLRVYIRCGRLQCARQVFDKLLKKNIYIWTTMIGGYAEYGHAEDAMRVYDK 209

Query: 99  MPER----NVVSWNSMVVGLIRNGELNEARK----VFNSMPIKNVISWNAMIAGYVECCM 150
           M +     N +++ S++        L   +K    +  S    +V    A++  YV+C  
Sbjct: 210 MRQECGQPNEITYLSILKACCCPVNLKWGKKIHAHIIQSGFQSDVRVETALVNMYVKCGS 269

Query: 151 MGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVV--SWT------- 201
           + +A ++F++M ERNV++WT MI G    G  +E + LF +M R+  +  S+T       
Sbjct: 270 IEDAQLIFDKMVERNVISWTVMIGGLAHYGRGQEAFHLFLQMQREGFIPNSYTYVSILNA 329

Query: 202 -AMIGGFAW-NGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFD 259
            A  G   W    H  ++          + G   +++  N++++ Y + G +++A+ +FD
Sbjct: 330 NASAGALEWVKEVHSHAV----------NAGLALDLRVGNALVHMYAKSGSIDDARVVFD 379

Query: 260 TVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYL 319
            +  RD  SWT MI                                GL Q+    EA  L
Sbjct: 380 GMTERDIFSWTVMI-------------------------------GGLAQHGRGQEAFSL 408

Query: 320 FMEMRAHG-VPPLNATFSVLFGAA-GATANIDLGRQIHCVLMKTESESDLILENCLISMY 377
           F++M+ +G +P L    S+L  +A  +T+ ++  + +H    +    SDL + N LI MY
Sbjct: 409 FLQMQRNGCLPNLTTYLSILNASAIASTSALEWVKVVHKHAEEAGFISDLRIGNALIHMY 468

Query: 378 AKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFL 437
           AKCG ID+A  +F  M  RD++SWN+M+ G + +G  +E   VF  M + G  P+S T+L
Sbjct: 469 AKCGSIDDARLVFDGMCDRDVISWNAMMGGLAQNGCGHEAFTVFLQMQQEGLVPDSTTYL 528

Query: 438 GILSA 442
            +L+ 
Sbjct: 529 SLLNT 533



 Score =  148 bits (373), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 90/320 (28%), Positives = 164/320 (51%), Gaps = 21/320 (6%)

Query: 149 CMMGEAIVLFEEME--------ERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSW 200
           C+  E I+L +++         E+N+     ++  Y R G ++    +F ++ +KN+  W
Sbjct: 128 CLKQEDILLAKQVHVCIIKSGMEQNLYVANKLLRVYIRCGRLQCARQVFDKLLKKNIYIW 187

Query: 201 TAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCN----VQSCNSMINGYIRFGRLEEA-- 254
           T MIGG+A  G  ++++ ++ +M+  C   N       +++C   +N  +++G+   A  
Sbjct: 188 TTMIGGYAEYGHAEDAMRVYDKMRQECGQPNEITYLSILKACCCPVN--LKWGKKIHAHI 245

Query: 255 -QNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELF 313
            Q+ F +  VR E   T++++ Y+  G + +A  +F  M +R+ ++WT MI GL      
Sbjct: 246 IQSGFQS-DVRVE---TALVNMYVKCGSIEDAQLIFDKMVERNVISWTVMIGGLAHYGRG 301

Query: 314 VEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCL 373
            EA +LF++M+  G  P + T+  +  A  +   ++  +++H   +      DL + N L
Sbjct: 302 QEAFHLFLQMQREGFIPNSYTYVSILNANASAGALEWVKEVHSHAVNAGLALDLRVGNAL 361

Query: 374 ISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNS 433
           + MYAK G ID+A  +F  M  RD+ SW  M+ G + HG   E   +F  M  +G  PN 
Sbjct: 362 VHMYAKSGSIDDARVVFDGMTERDIFSWTVMIGGLAQHGRGQEAFSLFLQMQRNGCLPNL 421

Query: 434 VTFLGILSACSHAGLVSRGW 453
            T+L IL+A + A   +  W
Sbjct: 422 TTYLSILNASAIASTSALEW 441


>gi|225462731|ref|XP_002267928.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic [Vitis vinifera]
 gi|302143682|emb|CBI22543.3| unnamed protein product [Vitis vinifera]
          Length = 728

 Score =  330 bits (847), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 210/659 (31%), Positives = 336/659 (50%), Gaps = 81/659 (12%)

Query: 9   SLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEM 68
           S ++    +I+ Y+K+  +D A+ LF  MPQR VVS+N M+S + ++GR SEA  L   M
Sbjct: 30  SEIISTNIAISNYAKQSKLDVARQLFDQMPQRTVVSWNTMISSYSKHGRFSEALFLVYSM 89

Query: 69  PERN----------VVSWTAMICGLADAGRV-CEARKLFEEMPERNVVSWNSMVVGLIRN 117
              +          V+S  A +  L D   + C   K   E  E   +  ++++      
Sbjct: 90  HRSHMKLSESTFSSVLSVCARLRCLRDGKLIHCLVLKSGSESFE---LVGSALLYFYASC 146

Query: 118 GELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYC 177
            E+ EAR+VF+ +  +N + W+ M+ GYV C +M +A+ +F +M  R+VV WT++ISG+ 
Sbjct: 147 FEIGEARRVFDVLVRRNEVLWSLMLVGYVTCNVMDDALSVFVKMPRRDVVAWTTLISGFS 206

Query: 178 -----------------RAGEVEEGY----CLFRRMPRKNVVSWTAMIGGFAWN-GFHKE 215
                            R+GE         C+ R   R  ++S    + G     G   +
Sbjct: 207 KNGDGCGKALEIFRLMMRSGETTPNEFTFDCVVRACGRLGILSVGRTVHGLLMKCGLEYD 266

Query: 216 SLL------LFIEMKGICDNGNNCN--VQSC----NSMINGYIRFGRLEEAQNLFDTVPV 263
             +       + E + I D    C   V  C    NS+I G I  GR+E+A+ +F+ +  
Sbjct: 267 PSIGGALVEFYCECEAIDDALRVCKGVVNPCLNALNSLIEGLISMGRIEDAELVFNGMTE 326

Query: 264 RDEISWTSMIDGYLSVGQVSNAYYLFHNMP------------------------------ 293
            + +S+  MI GY   GQ+ ++  LF  MP                              
Sbjct: 327 MNPVSYNLMIKGYAVGGQMDDSKRLFEKMPCRTIFSSNTMISVYSRNGEIDKALELFEET 386

Query: 294 --DRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLG 351
             ++D V W +MISG + +    EA  L++ M    +    +TFS LF A     ++  G
Sbjct: 387 KNEKDPVTWNSMISGYIHSGQPEEALKLYITMHRLSIQQTQSTFSALFHACSCLGSLHQG 446

Query: 352 RQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHH 411
           + +H  L+KT  ES++ +   LI MY+KCG I  A   F ++ S ++ +W +++ G ++H
Sbjct: 447 QLLHAHLIKTPFESNVYVGTSLIDMYSKCGSIMEAQTSFVSIFSPNVAAWTALINGHAYH 506

Query: 412 GLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEH 471
           GL +E + +F+ M+E G  PN  TF+G+LSACS AGLV+ G ++F++M   Y + P  EH
Sbjct: 507 GLGSEAISLFDRMIEQGLAPNGATFVGVLSACSRAGLVNEGMKIFHSMERCYSVTPTLEH 566

Query: 472 YVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLEL 531
           Y  +++LLGR+G I+EAEEF+ ++P E D  +WGALL AC F   + E+ E  A+++   
Sbjct: 567 YACVVDLLGRSGHIREAEEFIKKMPLEADGVVWGALLSACWFWM-DLEVGERVAEKMFSF 625

Query: 532 DPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDK 590
           DP    ++V+L NIYA  GR  E+  +R  +    V+K PGCSW+  N  I +F   D+
Sbjct: 626 DPKPISSYVILSNIYAGLGRWREKMMVRKILRGFKVKKDPGCSWIELNNKIHVFSIEDR 684



 Score =  125 bits (313), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 115/467 (24%), Positives = 209/467 (44%), Gaps = 59/467 (12%)

Query: 132 IKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRR 191
           +  +IS N  I+ Y +   +  A  LF++M +R VV+W +MIS Y + G   E   L   
Sbjct: 29  LSEIISTNIAISNYAKQSKLDVARQLFDQMPQRTVVSWNTMISSYSKHGRFSEALFLVYS 88

Query: 192 MPRKNV----VSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIR 247
           M R ++     ++++++   A     ++  L+      +  +G+       ++++  Y  
Sbjct: 89  MHRSHMKLSESTFSSVLSVCARLRCLRDGKLIHCL---VLKSGSESFELVGSALLYFYAS 145

Query: 248 FGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGL 307
              + EA+ +FD +  R+E+ W+ M+ GY++   + +A  +F  MP RD VAWT +ISG 
Sbjct: 146 CFEIGEARRVFDVLVRRNEVLWSLMLVGYVTCNVMDDALSVFVKMPRRDVVAWTTLISGF 205

Query: 308 VQN-ELFVEATYLF-MEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESES 365
            +N +   +A  +F + MR+    P   TF  +  A G    + +GR +H +LMK   E 
Sbjct: 206 SKNGDGCGKALEIFRLMMRSGETTPNEFTFDCVVRACGRLGILSVGRTVHGLLMKCGLEY 265

Query: 366 DLILENCLISMYAKCGVIDNAYN-------------------------------IFSNMV 394
           D  +   L+  Y +C  ID+A                                 +F+ M 
Sbjct: 266 DPSIGGALVEFYCECEAIDDALRVCKGVVNPCLNALNSLIEGLISMGRIEDAELVFNGMT 325

Query: 395 SRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLG--ILSACSHAGLVSRG 452
             + VS+N M+ G++  G  +++ ++FE M      P    F    ++S  S  G + + 
Sbjct: 326 EMNPVSYNLMIKGYAVGGQMDDSKRLFEKM------PCRTIFSSNTMISVYSRNGEIDKA 379

Query: 453 WELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVL---RLPFEPDHRIWGALLG 509
            ELF       K +  P  + SMI+    +G+ +EA +  +   RL  +     + AL  
Sbjct: 380 LELFEET----KNEKDPVTWNSMISGYIHSGQPEEALKLYITMHRLSIQQTQSTFSALFH 435

Query: 510 ACGFCEGNAEIAEHAAKRLLELDPLNAPAHV--VLCNIYAASGRHVE 554
           AC  C G+    +     L++  P  +  +V   L ++Y+  G  +E
Sbjct: 436 ACS-CLGSLHQGQLLHAHLIK-TPFESNVYVGTSLIDMYSKCGSIME 480


>gi|357116509|ref|XP_003560023.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Brachypodium distachyon]
          Length = 804

 Score =  330 bits (846), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 189/611 (30%), Positives = 331/611 (54%), Gaps = 27/611 (4%)

Query: 12  VHLTSSITKYSKRGFIDEAKALFQLMP--QRNVVSYNAMLSGFLQNGRLSEARRLF---- 65
           V  TS ++ Y+  G + ++ A F  +P  +R+ V +NAM+S F +    + A  +F    
Sbjct: 90  VAATSLVSAYAVAGRLRDSAAFFDSVPVARRDTVLHNAMISAFARASLAAPAVSVFRSLL 149

Query: 66  --EEMPERNVVSWTAMICGLAD-----AGRVCEARKLFEEMPERNVVSWNSMVVGLIRN- 117
             ++    +  S+T+++  +            +      ++    V+S ++ ++ L    
Sbjct: 150 ASDDSLRPDDYSFTSLLSAVGQMHDLAVSHCTQLHCAVHKLGAGAVLSVSNALIALYMKC 209

Query: 118 ---GELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMIS 174
              G   +ARKV + MP K+ ++W  ++ G+V    +  A   FEE++    V W +MIS
Sbjct: 210 DAPGVTRDARKVLDEMPEKDELTWTTIVVGHVRKGDVHAARSAFEEIDGEFDVVWNAMIS 269

Query: 175 GYCRAGEVEEGYCLFRRMPRKNV----VSWTAMIGGFAWNGF--HKESLL-LFIEMKGIC 227
           GY ++G   E + LFRRM  K +     ++T+++   A  GF  H +S+   FI ++   
Sbjct: 270 GYVQSGMCAEAFELFRRMVSKRIPPDEFTFTSLLSACANAGFFLHGKSVHGQFIRLQP-- 327

Query: 228 DNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYY 287
           D      +   N+++  Y + G++  A  +FD++ ++D +SW +++ GY+  G + NA  
Sbjct: 328 DFVPEAALPVNNALVTLYSKSGKIAVATKIFDSMTLKDVVSWNTILSGYIESGCLDNAAR 387

Query: 288 LFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATAN 347
           +F  MP +  ++W  M+SG V   L  +A  LF +MR+  V P + T++    A G    
Sbjct: 388 IFKEMPYKSELSWMVMVSGYVHGGLAEDALKLFNQMRSEDVKPCDYTYAGAVAACGELGA 447

Query: 348 IDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMG 407
           +  G+Q+H  L++   E+     N L++MYA+CG + +A  +F  M + D VSWN+M+  
Sbjct: 448 LKHGKQLHAHLVQCGFEASNSAGNALLTMYARCGAVKDARLVFLVMPNVDSVSWNAMISA 507

Query: 408 FSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQP 467
              HG   E L++F+ M+  G +P+ ++FL IL+AC+HAGLV  G++ F +M   + I P
Sbjct: 508 LGQHGHGREALELFDQMVAQGIYPDRISFLTILTACNHAGLVDDGFQYFESMERDFGISP 567

Query: 468 GPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKR 527
           G +HY  +I+LLGRAG+I EA + +  +PFEP   IW A+L  C    G+ E+  +AA +
Sbjct: 568 GEDHYARLIDLLGRAGRIGEARDLIKTMPFEPTPAIWEAILSGCRI-NGDMELGAYAADQ 626

Query: 528 LLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLS 587
           L ++ P +   +++L N Y+A+GR V+  ++R  M  +GV+K PGCSW+     + +FL 
Sbjct: 627 LFKMVPEHDGTYILLSNTYSAAGRWVDAARVRKLMRDRGVKKEPGCSWIEVGNKVHVFLV 686

Query: 588 GDKIPAQVAEI 598
           GD       E+
Sbjct: 687 GDTKHPDAHEV 697



 Score = 79.3 bits (194), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 68/303 (22%), Positives = 134/303 (44%), Gaps = 50/303 (16%)

Query: 11  VVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPE 70
           VV   + ++ Y + G +D A  +F+ MP ++ +S+  M+SG++  G   +A +LF +M  
Sbjct: 366 VVSWNTILSGYIESGCLDNAARIFKEMPYKSELSWMVMVSGYVHGGLAEDALKLFNQMRS 425

Query: 71  RNV----VSWTAMICGLADAGRVCEARKLFEEMP----ERNVVSWNSMVVGLIRNGELNE 122
            +V     ++   +    + G +   ++L   +     E +  + N+++    R G + +
Sbjct: 426 EDVKPCDYTYAGAVAACGELGALKHGKQLHAHLVQCGFEASNSAGNALLTMYARCGAVKD 485

Query: 123 ARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNV----VTWTSMISGYCR 178
           AR VF  MP  + +SWNAMI+   +     EA+ LF++M  + +    +++ ++++    
Sbjct: 486 ARLVFLVMPNVDSVSWNAMISALGQHGHGREALELFDQMVAQGIYPDRISFLTILTACNH 545

Query: 179 AGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSC 238
           AG V++G+  F  M R                                 D G +      
Sbjct: 546 AGLVDDGFQYFESMER---------------------------------DFGISPGEDHY 572

Query: 239 NSMINGYIRFGRLEEAQNLFDTVPVRDEIS-WTSMIDGYLSVGQVSNAYY----LFHNMP 293
             +I+   R GR+ EA++L  T+P     + W +++ G    G +    Y    LF  +P
Sbjct: 573 ARLIDLLGRAGRIGEARDLIKTMPFEPTPAIWEAILSGCRINGDMELGAYAADQLFKMVP 632

Query: 294 DRD 296
           + D
Sbjct: 633 EHD 635


>gi|357167614|ref|XP_003581249.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21300-like
            [Brachypodium distachyon]
          Length = 1430

 Score =  330 bits (846), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 187/591 (31%), Positives = 308/591 (52%), Gaps = 48/591 (8%)

Query: 46   NAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVV 105
            N ++S + + GRL +ARR+F+E+P  N  S+ A++   A  GR  +AR LF  +P+ +  
Sbjct: 799  NTLVSAYARLGRLPDARRVFDEIPHPNTFSYNALLSAHARLGRPADARALFHAIPDPDQC 858

Query: 106  SWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEA--------IVL 157
            S+N+++  L ++    +A     +M   + +      A  +  C   +          ++
Sbjct: 859  SYNAVIAALAQHSRGADALLFLAAMHADDFVLNAYSFASALSACAAEKDSRTGVQVHALV 918

Query: 158  FEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESL 217
             +    ++V   ++++  Y +    EE   +F  MP +N+VSW ++I  +  NG   E+L
Sbjct: 919  SKSPHAKDVYIGSALLDMYAKCEWPEEARRVFEAMPERNIVSWNSLITCYEQNGPVGEAL 978

Query: 218  LLFIEM-------------------KGICDNGNNCNVQS--------------CNSMING 244
            +LF+ M                    G+  +     V +               N++++ 
Sbjct: 979  VLFVSMMKAGFVPDEVTLASVMSACAGLAADREGRQVHARVVKSDRFREDMVLSNALVDM 1038

Query: 245  YIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMI 304
            Y + GR   A+ +FD +  R  +S TS+I GY     V +A  +F  M +++ +AW  +I
Sbjct: 1039 YAKCGRTRAARCVFDRMASRSVVSETSLITGYARSANVEDAQMVFSQMVEKNVIAWNVLI 1098

Query: 305  SGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTE-- 362
            +   QN    EA  LF+ ++   V P + T+  +  A G  A++ LG+Q H  ++K    
Sbjct: 1099 AAYAQNGEEEEALRLFVRLKRESVWPTHYTYGNVLNACGNVADLQLGQQAHVHVLKEGFR 1158

Query: 363  ----SESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETL 418
                 ESD+ + N L+ MY K G ID+   +F  M +RD VSWN+M++G + +G A + L
Sbjct: 1159 FDFGPESDVFVGNSLVDMYLKTGSIDDGAKVFERMAARDNVSWNAMIVGHAQNGRAKDAL 1218

Query: 419  KVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINL 478
             +FE ML S   P+SVT +G+LSAC H+GLV  G   F +M + + I P  +HY  MI+L
Sbjct: 1219 HLFERMLCSKESPDSVTMIGVLSACGHSGLVEEGRRYFRSMTEDHGIIPSQDHYTCMIDL 1278

Query: 479  LGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPA 538
            LGRAG +KE EE +  +  EPD  +W +LLG+C     N E+ E AA +L ELDP N+  
Sbjct: 1279 LGRAGHLKEVEELIKEMSMEPDAVLWASLLGSCRL-HKNVEMGEWAAGKLFELDPRNSGP 1337

Query: 539  HVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGD 589
            +V+L N+YA  G+  +  ++R  M  +GV K PGCSW+     + +FL+ D
Sbjct: 1338 YVLLSNMYAELGKWADVFRVRSSMKHRGVSKQPGCSWIEIGRKVSVFLARD 1388



 Score =  205 bits (522), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 179/628 (28%), Positives = 276/628 (43%), Gaps = 101/628 (16%)

Query: 17  SITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMP------- 69
           +I   +  G + +A+ LF LMP R+  S+NA+++   + G  SEA  LF  M        
Sbjct: 91  AIESLAACGSVADARELFDLMPLRDGGSWNAIITASSRAGHPSEALSLFSNMNSLGIRPK 150

Query: 70  --------------------------------ERNVVSWTAMICGLADAGRVCEARKLFE 97
                                           + NV+  TA++    +   + +AR+ F+
Sbjct: 151 DATMASVLSCCAECLDLCGARQLHGHIAKRDFQSNVILGTALVDVYGNCFLLADARRAFD 210

Query: 98  EMPERNVVSWNSMVVGLIRNGELNEARKVFNSM------PIKNVISW--------NAMIA 143
           ++ E N +SWN +V      G  + A  +F  M      P+   +S         NA+  
Sbjct: 211 DILEPNAISWNVIVRRYHLAGMGDMAVDMFFRMLSAGVRPLGYTVSHAVLACRDNNALEE 270

Query: 144 G-------------------------YVECCMMGEAIVLFEEMEERNVVTWTSMISGYCR 178
           G                         Y +C  M  A  LF     +++V  TS++SG   
Sbjct: 271 GRCIHAFVLRHGYEHHVHVRSSVVDMYAKCGAMDAAQSLFNLAPMKDMVMSTSIVSGLAS 330

Query: 179 AGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSC 238
            G + +   +F  M  +N+VSW AM+ G+  +     +LLLF +M+      +   + S 
Sbjct: 331 CGRIADAKRVFEGMKERNLVSWNAMLTGYIRSMDLTGALLLFQQMRQETREFDAITLGSV 390

Query: 239 NSMINGYIRFGRLEEAQNL-----FDTVPVRDEISWTSMIDGYLSVGQVSNA--YYLFHN 291
            S   G +  G+ EE         F + P+       +++  Y   G + +A    LF  
Sbjct: 391 LSACTGILDIGKGEEVHAFAIKCGFFSSPILK----NALVRMYSKCGCLRSAERLLLFEM 446

Query: 292 MPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDL- 350
             +RD+ +W ++ISG  ++ +   A Y   +M++  V P  +TFS    A  A ANI L 
Sbjct: 447 GSERDSYSWNSLISGYERHSMSEAALYALTKMQSE-VTPNQSTFS---SALAACANIFLL 502

Query: 351 --GRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGF 408
             G QIH  +++   E D IL + LI MY KC   D +  IF    SRD++ WNSM+ G 
Sbjct: 503 KQGMQIHAYMIRKGYEIDDILRSVLIDMYCKCRQFDYSIRIFEARPSRDVILWNSMIFGC 562

Query: 409 SHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPG 468
           ++ G     L +F+ M + G   +SVTFLG L +C   G V  G   F  M D   I P 
Sbjct: 563 AYSGKGEYGLDLFDEMQKQGIKADSVTFLGALVSCISEGHVRLGRSYFTLMMD-ESIIPR 621

Query: 469 PEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRL 528
            EHY  MI LLG+ G + E E+FV  +PFEP   +W  +   C    GN ++ E AAK +
Sbjct: 622 IEHYECMIELLGKHGCMVELEDFVEHMPFEPTTAMWLRIFDCCRE-YGNRKLGERAAKCI 680

Query: 529 LELDPLNAPAHVVLCNIYAAS--GRHVE 554
            + +PL  P   V    Y ++  GR  E
Sbjct: 681 NDSNPLT-PVQFVATVDYESNDGGREAE 707



 Score =  158 bits (400), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 122/479 (25%), Positives = 217/479 (45%), Gaps = 59/479 (12%)

Query: 45  YNAMLSGFLQNGRLSEARRLFEEMPERNVVS-----------WTAMICGLADAGRVCEAR 93
           Y ++L     +G LS ARR+   +   +  S           +   I  LA  G V +AR
Sbjct: 46  YASLLRLATSHGSLSAARRIATHLAASSSASSTSRSSVPTFLFNRAIESLAACGSVADAR 105

Query: 94  KLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCM--- 150
           +LF+ MP R+  SWN+++    R G  +EA  +F++M    +   +A +A  + CC    
Sbjct: 106 ELFDLMPLRDGGSWNAIITASSRAGHPSEALSLFSNMNSLGIRPKDATMASVLSCCAECL 165

Query: 151 -MGEAIVLFEEMEER----NVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIG 205
            +  A  L   + +R    NV+  T+++  Y     + +    F  +   N +SW  ++ 
Sbjct: 166 DLCGARQLHGHIAKRDFQSNVILGTALVDVYGNCFLLADARRAFDDILEPNAISWNVIVR 225

Query: 206 GFAWNGFHKESLLLFIEM--------------------------KGIC------DNGNNC 233
            +   G    ++ +F  M                          +G C       +G   
Sbjct: 226 RYHLAGMGDMAVDMFFRMLSAGVRPLGYTVSHAVLACRDNNALEEGRCIHAFVLRHGYEH 285

Query: 234 NVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMP 293
           +V   +S+++ Y + G ++ AQ+LF+  P++D +  TS++ G  S G++++A  +F  M 
Sbjct: 286 HVHVRSSVVDMYAKCGAMDAAQSLFNLAPMKDMVMSTSIVSGLASCGRIADAKRVFEGMK 345

Query: 294 DRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQ 353
           +R+ V+W AM++G +++     A  LF +MR         T   +  A     +I  G +
Sbjct: 346 ERNLVSWNAMLTGYIRSMDLTGALLLFQQMRQETREFDAITLGSVLSACTGILDIGKGEE 405

Query: 354 IHCVLMKTESESDLILENCLISMYAKCGVIDNAYN--IFSNMVSRDLVSWNSMVMGFSHH 411
           +H   +K    S  IL+N L+ MY+KCG + +A    +F     RD  SWNS++ G+  H
Sbjct: 406 VHAFAIKCGFFSSPILKNALVRMYSKCGCLRSAERLLLFEMGSERDSYSWNSLISGYERH 465

Query: 412 GLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPE 470
            ++   L     M +S   PN  TF   L+AC++  L+ +G ++       Y I+ G E
Sbjct: 466 SMSEAALYALTKM-QSEVTPNQSTFSSALAACANIFLLKQGMQIH-----AYMIRKGYE 518



 Score =  112 bits (279), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 102/388 (26%), Positives = 174/388 (44%), Gaps = 52/388 (13%)

Query: 12  VHLTSSITK-YSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPE 70
           VH+ SS+   Y+K G +D A++LF L P +++V   +++SG    GR+++A+R+FE M E
Sbjct: 287 VHVRSSVVDMYAKCGAMDAAQSLFNLAPMKDMVMSTSIVSGLASCGRIADAKRVFEGMKE 346

Query: 71  RNVVSWTAMICGLADAGRVCEARKLFEEM----PERNVVSWNSMV---VGLIRNGELNEA 123
           RN+VSW AM+ G   +  +  A  LF++M     E + ++  S++    G++  G+  E 
Sbjct: 347 RNLVSWNAMLTGYIRSMDLTGALLLFQQMRQETREFDAITLGSVLSACTGILDIGKGEEV 406

Query: 124 RKV-----FNSMPIKNVISWNAMIAGYVEC-CMM-GEAIVLFEEMEERNVVTWTSMISGY 176
                   F S PI      NA++  Y +C C+   E ++LFE   ER+  +W S+ISGY
Sbjct: 407 HAFAIKCGFFSSPILK----NALVRMYSKCGCLRSAERLLLFEMGSERDSYSWNSLISGY 462

Query: 177 CRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQ 236
            R    E       +M  +   + +      A          +F+  +G+          
Sbjct: 463 ERHSMSEAALYALTKMQSEVTPNQSTFSSALA------ACANIFLLKQGM---------- 506

Query: 237 SCNSMINGY-IRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDR 295
                I+ Y IR G        ++     D+I  + +ID Y    Q   +  +F   P R
Sbjct: 507 ----QIHAYMIRKG--------YEI----DDILRSVLIDMYCKCRQFDYSIRIFEARPSR 550

Query: 296 DAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIH 355
           D + W +MI G   +        LF EM+  G+   + TF     +  +  ++ LGR   
Sbjct: 551 DVILWNSMIFGCAYSGKGEYGLDLFDEMQKQGIKADSVTFLGALVSCISEGHVRLGRSYF 610

Query: 356 CVLMKTESESDLILENCLISMYAKCGVI 383
            ++M       +    C+I +  K G +
Sbjct: 611 TLMMDESIIPRIEHYECMIELLGKHGCM 638



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 74/238 (31%), Positives = 116/238 (48%), Gaps = 27/238 (11%)

Query: 11   VVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPE 70
            VV  TS IT Y++   +++A+ +F  M ++NV+++N +++ + QNG   EA RLF  +  
Sbjct: 1060 VVSETSLITGYARSANVEDAQMVFSQMVEKNVIAWNVLIAAYAQNGEEEEALRLFVRLKR 1119

Query: 71   RNVVSWTAMI--------CG-LAD--AGRVCEARKL-----FEEMPERNVVSWNSMVVGL 114
             +V  W            CG +AD   G+      L     F+  PE +V   NS+V   
Sbjct: 1120 ESV--WPTHYTYGNVLNACGNVADLQLGQQAHVHVLKEGFRFDFGPESDVFVGNSLVDMY 1177

Query: 115  IRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEM----EERNVVTWT 170
            ++ G +++  KVF  M  ++ +SWNAMI G+ +     +A+ LFE M    E  + VT  
Sbjct: 1178 LKTGSIDDGAKVFERMAARDNVSWNAMIVGHAQNGRAKDALHLFERMLCSKESPDSVTMI 1237

Query: 171  SMISGYCRAGEVEEGYCLFRRMPRKNVV-----SWTAMIGGFAWNGFHKESLLLFIEM 223
             ++S    +G VEEG   FR M   + +      +T MI      G  KE   L  EM
Sbjct: 1238 GVLSACGHSGLVEEGRRYFRSMTEDHGIIPSQDHYTCMIDLLGRAGHLKEVEELIKEM 1295



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 82/335 (24%), Positives = 156/335 (46%), Gaps = 40/335 (11%)

Query: 7   PKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFE 66
           P   +V  TS ++  +  G I +AK +F+ M +RN+VS+NAML+G++++  L+ A  LF+
Sbjct: 314 PMKDMVMSTSIVSGLASCGRIADAKRVFEGMKERNLVSWNAMLTGYIRSMDLTGALLLFQ 373

Query: 67  EMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELN--EAR 124
           +M +                    E R+ F+ +   +V+S  + ++ + +  E++    +
Sbjct: 374 QMRQ--------------------ETRE-FDAITLGSVLSACTGILDIGKGEEVHAFAIK 412

Query: 125 KVFNSMPIKNVISWNAMIAGYVEC-CMM-GEAIVLFEEMEERNVVTWTSMISGYCRAGEV 182
             F S PI      NA++  Y +C C+   E ++LFE   ER+  +W S+ISGY R    
Sbjct: 413 CGFFSSPILK----NALVRMYSKCGCLRSAERLLLFEMGSERDSYSWNSLISGYERHSMS 468

Query: 183 EEGYCLFRRMPRK---NVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCN 239
           E       +M  +   N  ++++ +   A     K+ + +   M      G   +    +
Sbjct: 469 EAALYALTKMQSEVTPNQSTFSSALAACANIFLLKQGMQIHAYM---IRKGYEIDDILRS 525

Query: 240 SMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDR---- 295
            +I+ Y +  + + +  +F+  P RD I W SMI G    G+      LF  M  +    
Sbjct: 526 VLIDMYCKCRQFDYSIRIFEARPSRDVILWNSMIFGCAYSGKGEYGLDLFDEMQKQGIKA 585

Query: 296 DAVAWT-AMISGLVQNELFVEATYLFMEMRAHGVP 329
           D+V +  A++S + +  + +  +Y  + M    +P
Sbjct: 586 DSVTFLGALVSCISEGHVRLGRSYFTLMMDESIIP 620



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 43/146 (29%), Positives = 71/146 (48%), Gaps = 10/146 (6%)

Query: 7    PKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFE 66
            P+S V    S +  Y K G ID+   +F+ M  R+ VS+NAM+ G  QNGR  +A  LFE
Sbjct: 1163 PESDVFVGNSLVDMYLKTGSIDDGAKVFERMAARDNVSWNAMIVGHAQNGRAKDALHLFE 1222

Query: 67   EM----PERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVV-----SWNSMVVGLIRN 117
             M       + V+   ++     +G V E R+ F  M E + +      +  M+  L R 
Sbjct: 1223 RMLCSKESPDSVTMIGVLSACGHSGLVEEGRRYFRSMTEDHGIIPSQDHYTCMIDLLGRA 1282

Query: 118  GELNEARKVFNSMPIK-NVISWNAMI 142
            G L E  ++   M ++ + + W +++
Sbjct: 1283 GHLKEVEELIKEMSMEPDAVLWASLL 1308


>gi|168056582|ref|XP_001780298.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162668246|gb|EDQ54857.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 986

 Score =  330 bits (846), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 200/638 (31%), Positives = 340/638 (53%), Gaps = 62/638 (9%)

Query: 15  TSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNV- 73
           T+ I  + K G I +A  +F  +P R++V++ +M++G  ++GR  +A  LF+ M E  V 
Sbjct: 250 TALINMHIKCGDIGDATKVFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQ 309

Query: 74  ---VSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMV-VG------LIRNGELNEA 123
              V++ +++        + + +K+   M E   V W++ + VG        + G + +A
Sbjct: 310 PDKVAFVSLLRACNHPEALEQGKKVHARMKE---VGWDTEIYVGTAILSMYTKCGSMEDA 366

Query: 124 RKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEER----NVVTW---------- 169
            +VF+ +  +NV+SW AMIAG+ +   + EA + F +M E     N VT+          
Sbjct: 367 LEVFDLVKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSP 426

Query: 170 -------------------------TSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMI 204
                                    T+++S Y + G +++ + +F ++ ++NVV+W AMI
Sbjct: 427 SALKRGQQIQDHIIEAGYGSDDRVRTALLSMYAKCGSLKDAHRVFEKISKQNVVAWNAMI 486

Query: 205 GGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQ---NLFDTV 261
             +  +  +  +L  F   + +   G   N  +  S++N       LE  +    L    
Sbjct: 487 TAYVQHEQYDNALATF---QALLKEGIKPNSSTFTSILNVCKSSDSLELGKWVHFLIMKA 543

Query: 262 PVRDEISWT-SMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLF 320
            +  ++  + +++  +++ G + +A  LF++MP RD V+W  +I+G VQ+     A   F
Sbjct: 544 GLESDLHVSNALVSMFVNCGDLMSAKNLFNDMPKRDLVSWNTIIAGFVQHGKNQVAFDYF 603

Query: 321 MEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKC 380
             M+  G+ P   TF+ L  A  +   +  GR++H ++ +   + D+++   LISMY KC
Sbjct: 604 KMMQESGIKPDKITFTGLLNACASPEALTEGRRLHALITEAAFDCDVLVGTGLISMYTKC 663

Query: 381 GVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGIL 440
           G I++A+ +F  +  +++ SW SM+ G++ HG   E L++F  M + G  P+ +TF+G L
Sbjct: 664 GSIEDAHQVFHKLPKKNVYSWTSMITGYAQHGRGKEALELFYQMQQEGVKPDWITFVGAL 723

Query: 441 SACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPD 500
           SAC+HAGL+  G   F +M + + I+P  EHY  M++L GRAG + EA EF++++  EPD
Sbjct: 724 SACAHAGLIEEGLHHFQSMKE-FNIEPRMEHYGCMVDLFGRAGLLNEAVEFIIKMQVEPD 782

Query: 501 HRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRM 560
            R+WGALLGAC     N E+AE AA++ LELDP +    V+L NIYAA+G   E  K+R 
Sbjct: 783 SRVWGALLGACQ-VHLNVELAEKAAQKKLELDPNDNGVFVILSNIYAAAGMWKEVAKMRK 841

Query: 561 DMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
            M  +GV K PG SW+  +G +  F S DK   Q  EI
Sbjct: 842 VMLDRGVVKKPGQSWIEVDGKVHTFYSDDKTHPQTEEI 879



 Score =  237 bits (604), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 155/537 (28%), Positives = 273/537 (50%), Gaps = 69/537 (12%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVV--- 74
           I  Y+K G    AK +F  M +++V S+N +L G++Q+G   EA +L E+M + +V    
Sbjct: 152 INMYAKCGNTISAKQIFDDMREKDVYSWNLLLGGYVQHGLYEEAFKLHEQMVQDSVKPDK 211

Query: 75  -SWTAMICGLADAGRVCEARKLFEEMPERNVVSWNS-MVVGL------IRNGELNEARKV 126
            ++ +M+   ADA  V + R+L+  + +     W++ + VG       I+ G++ +A KV
Sbjct: 212 RTFVSMLNACADARNVDKGRELYNLILK---AGWDTDLFVGTALINMHIKCGDIGDATKV 268

Query: 127 FNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNV-------------------- 166
           F+++P +++++W +MI G        +A  LF+ MEE  V                    
Sbjct: 269 FDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQPDKVAFVSLLRACNHPEAL 328

Query: 167 ------------VTW-------TSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGF 207
                       V W       T+++S Y + G +E+   +F  +  +NVVSWTAMI GF
Sbjct: 329 EQGKKVHARMKEVGWDTEIYVGTAILSMYTKCGSMEDALEVFDLVKGRNVVSWTAMIAGF 388

Query: 208 AWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPV---- 263
           A +G   E+ L F +M    ++G   N  +  S++        L+  Q + D +      
Sbjct: 389 AQHGRIDEAFLFFNKM---IESGIEPNRVTFMSILGACSSPSALKRGQQIQDHIIEAGYG 445

Query: 264 RDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEM 323
            D+   T+++  Y   G + +A+ +F  +  ++ VAW AMI+  VQ+E +  A   F  +
Sbjct: 446 SDDRVRTALLSMYAKCGSLKDAHRVFEKISKQNVVAWNAMITAYVQHEQYDNALATFQAL 505

Query: 324 RAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVI 383
              G+ P ++TF+ +     ++ +++LG+ +H ++MK   ESDL + N L+SM+  CG +
Sbjct: 506 LKEGIKPNSSTFTSILNVCKSSDSLELGKWVHFLIMKAGLESDLHVSNALVSMFVNCGDL 565

Query: 384 DNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSAC 443
            +A N+F++M  RDLVSWN+++ GF  HG        F+ M ESG  P+ +TF G+L+AC
Sbjct: 566 MSAKNLFNDMPKRDLVSWNTIIAGFVQHGKNQVAFDYFKMMQESGIKPDKITFTGLLNAC 625

Query: 444 SHAGLVSRGWELF----NAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLP 496
           +    ++ G  L      A FD   +  G      +I++  + G I++A +   +LP
Sbjct: 626 ASPEALTEGRRLHALITEAAFDC-DVLVG----TGLISMYTKCGSIEDAHQVFHKLP 677



 Score =  179 bits (454), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 102/423 (24%), Positives = 215/423 (50%), Gaps = 21/423 (4%)

Query: 102 RNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCM----MGEAIVL 157
           ++    N+++  L + G+ NEA +V   +   ++  +    +  ++ C+    +G+   +
Sbjct: 73  KDTQKANAVLNRLSKAGQFNEAMQVLERVDSSHIQIYRQTYSALLQLCIKFKNLGDGERI 132

Query: 158 FEEMEER----NVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFH 213
           +  +++     ++  W ++I+ Y + G       +F  M  K+V SW  ++GG+  +G +
Sbjct: 133 YNHIKKSGVQPDIFMWNTLINMYAKCGNTISAKQIFDDMREKDVYSWNLLLGGYVQHGLY 192

Query: 214 KESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPV----RDEISW 269
           +E+  L  +M     +    + ++  SM+N       +++ + L++ +       D    
Sbjct: 193 EEAFKLHEQM---VQDSVKPDKRTFVSMLNACADARNVDKGRELYNLILKAGWDTDLFVG 249

Query: 270 TSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVP 329
           T++I+ ++  G + +A  +F N+P RD V WT+MI+GL ++  F +A  LF  M   GV 
Sbjct: 250 TALINMHIKCGDIGDATKVFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQ 309

Query: 330 PLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNI 389
           P    F  L  A      ++ G+++H  + +   ++++ +   ++SMY KCG +++A  +
Sbjct: 310 PDKVAFVSLLRACNHPEALEQGKKVHARMKEVGWDTEIYVGTAILSMYTKCGSMEDALEV 369

Query: 390 FSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLV 449
           F  +  R++VSW +M+ GF+ HG  +E    F  M+ESG  PN VTF+ IL ACS    +
Sbjct: 370 FDLVKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSAL 429

Query: 450 SRGWELFNAMFDVYKIQPGPEHYV--SMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGAL 507
            RG ++ + + +      G +  V  +++++  + G +K+A     ++  + +   W A+
Sbjct: 430 KRGQQIQDHIIEA---GYGSDDRVRTALLSMYAKCGSLKDAHRVFEKIS-KQNVVAWNAM 485

Query: 508 LGA 510
           + A
Sbjct: 486 ITA 488


>gi|54695180|dbj|BAD67155.1| PpPPR_98 [Physcomitrella patens]
          Length = 986

 Score =  330 bits (846), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 200/638 (31%), Positives = 340/638 (53%), Gaps = 62/638 (9%)

Query: 15  TSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNV- 73
           T+ I  + K G I +A  +F  +P R++V++ +M++G  ++GR  +A  LF+ M E  V 
Sbjct: 250 TALINMHIKCGDIGDATKVFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQ 309

Query: 74  ---VSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMV-VG------LIRNGELNEA 123
              V++ +++        + + +K+   M E   V W++ + VG        + G + +A
Sbjct: 310 PDKVAFVSLLRACNHPEALEQGKKVHARMKE---VGWDTEIYVGTAILSMYTKCGSMEDA 366

Query: 124 RKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEER----NVVTW---------- 169
            +VF+ +  +NV+SW AMIAG+ +   + EA + F +M E     N VT+          
Sbjct: 367 LEVFDLVKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSP 426

Query: 170 -------------------------TSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMI 204
                                    T+++S Y + G +++ + +F ++ ++NVV+W AMI
Sbjct: 427 SALKRGQQIQDHIIEAGYGSDDRVRTALLSMYAKCGSLKDAHRVFEKISKQNVVAWNAMI 486

Query: 205 GGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQ---NLFDTV 261
             +  +  +  +L  F   + +   G   N  +  S++N       LE  +    L    
Sbjct: 487 TAYVQHEQYDNALATF---QALLKEGIKPNSSTFTSILNVCKSSDSLELGKWVHFLIMKA 543

Query: 262 PVRDEISWT-SMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLF 320
            +  ++  + +++  +++ G + +A  LF++MP RD V+W  +I+G VQ+     A   F
Sbjct: 544 GLESDLHVSNALVSMFVNCGDLMSAKNLFNDMPKRDLVSWNTIIAGFVQHGKNQVAFDYF 603

Query: 321 MEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKC 380
             M+  G+ P   TF+ L  A  +   +  GR++H ++ +   + D+++   LISMY KC
Sbjct: 604 KMMQESGIKPDKITFTGLLNACASPEALTEGRRLHALITEAAFDCDVLVGTGLISMYTKC 663

Query: 381 GVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGIL 440
           G I++A+ +F  +  +++ SW SM+ G++ HG   E L++F  M + G  P+ +TF+G L
Sbjct: 664 GSIEDAHQVFHKLPKKNVYSWTSMIAGYAQHGRGKEALELFYQMQQEGVKPDWITFVGAL 723

Query: 441 SACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPD 500
           SAC+HAGL+  G   F +M + + I+P  EHY  M++L GRAG + EA EF++++  EPD
Sbjct: 724 SACAHAGLIEEGLHHFQSMKE-FNIEPRMEHYGCMVDLFGRAGLLNEAVEFIIKMQVEPD 782

Query: 501 HRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRM 560
            R+WGALLGAC     N E+AE AA++ LELDP +    V+L NIYAA+G   E  K+R 
Sbjct: 783 SRVWGALLGACQ-VHLNVELAEKAAQKKLELDPNDNGVFVILSNIYAAAGMWKEVAKMRK 841

Query: 561 DMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
            M  +GV K PG SW+  +G +  F S DK   Q  EI
Sbjct: 842 VMLDRGVVKKPGQSWIEVDGKVHTFYSDDKTHPQTEEI 879



 Score =  237 bits (604), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 155/537 (28%), Positives = 273/537 (50%), Gaps = 69/537 (12%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVV--- 74
           I  Y+K G    AK +F  M +++V S+N +L G++Q+G   EA +L E+M + +V    
Sbjct: 152 INMYAKCGNTISAKQIFDDMREKDVYSWNLLLGGYVQHGLYEEAFKLHEQMVQDSVKPDK 211

Query: 75  -SWTAMICGLADAGRVCEARKLFEEMPERNVVSWNS-MVVGL------IRNGELNEARKV 126
            ++ +M+   ADA  V + R+L+  + +     W++ + VG       I+ G++ +A KV
Sbjct: 212 RTFVSMLNACADARNVDKGRELYNLILK---AGWDTDLFVGTALINMHIKCGDIGDATKV 268

Query: 127 FNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNV-------------------- 166
           F+++P +++++W +MI G        +A  LF+ MEE  V                    
Sbjct: 269 FDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQPDKVAFVSLLRACNHPEAL 328

Query: 167 ------------VTW-------TSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGF 207
                       V W       T+++S Y + G +E+   +F  +  +NVVSWTAMI GF
Sbjct: 329 EQGKKVHARMKEVGWDTEIYVGTAILSMYTKCGSMEDALEVFDLVKGRNVVSWTAMIAGF 388

Query: 208 AWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPV---- 263
           A +G   E+ L F +M    ++G   N  +  S++        L+  Q + D +      
Sbjct: 389 AQHGRIDEAFLFFNKM---IESGIEPNRVTFMSILGACSSPSALKRGQQIQDHIIEAGYG 445

Query: 264 RDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEM 323
            D+   T+++  Y   G + +A+ +F  +  ++ VAW AMI+  VQ+E +  A   F  +
Sbjct: 446 SDDRVRTALLSMYAKCGSLKDAHRVFEKISKQNVVAWNAMITAYVQHEQYDNALATFQAL 505

Query: 324 RAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVI 383
              G+ P ++TF+ +     ++ +++LG+ +H ++MK   ESDL + N L+SM+  CG +
Sbjct: 506 LKEGIKPNSSTFTSILNVCKSSDSLELGKWVHFLIMKAGLESDLHVSNALVSMFVNCGDL 565

Query: 384 DNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSAC 443
            +A N+F++M  RDLVSWN+++ GF  HG        F+ M ESG  P+ +TF G+L+AC
Sbjct: 566 MSAKNLFNDMPKRDLVSWNTIIAGFVQHGKNQVAFDYFKMMQESGIKPDKITFTGLLNAC 625

Query: 444 SHAGLVSRGWELF----NAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLP 496
           +    ++ G  L      A FD   +  G      +I++  + G I++A +   +LP
Sbjct: 626 ASPEALTEGRRLHALITEAAFDC-DVLVG----TGLISMYTKCGSIEDAHQVFHKLP 677



 Score =  174 bits (442), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 101/423 (23%), Positives = 214/423 (50%), Gaps = 21/423 (4%)

Query: 102 RNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCM----MGEAIVL 157
           ++    N+++  L + G+ NEA +V   +   ++  +    +  ++ C+    +G+   +
Sbjct: 73  KDTQKANAVLNRLSKAGQFNEAMQVLERVDSSHIQIYRQTYSALLQLCIKFKNLGDGERI 132

Query: 158 FEEMEER----NVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFH 213
           +  +++     ++    ++I+ Y + G       +F  M  K+V SW  ++GG+  +G +
Sbjct: 133 YNHIKKSGVQPDIFMRNTLINMYAKCGNTISAKQIFDDMREKDVYSWNLLLGGYVQHGLY 192

Query: 214 KESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPV----RDEISW 269
           +E+  L  +M     +    + ++  SM+N       +++ + L++ +       D    
Sbjct: 193 EEAFKLHEQM---VQDSVKPDKRTFVSMLNACADARNVDKGRELYNLILKAGWDTDLFVG 249

Query: 270 TSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVP 329
           T++I+ ++  G + +A  +F N+P RD V WT+MI+GL ++  F +A  LF  M   GV 
Sbjct: 250 TALINMHIKCGDIGDATKVFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQ 309

Query: 330 PLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNI 389
           P    F  L  A      ++ G+++H  + +   ++++ +   ++SMY KCG +++A  +
Sbjct: 310 PDKVAFVSLLRACNHPEALEQGKKVHARMKEVGWDTEIYVGTAILSMYTKCGSMEDALEV 369

Query: 390 FSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLV 449
           F  +  R++VSW +M+ GF+ HG  +E    F  M+ESG  PN VTF+ IL ACS    +
Sbjct: 370 FDLVKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSAL 429

Query: 450 SRGWELFNAMFDVYKIQPGPEHYV--SMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGAL 507
            RG ++ + + +      G +  V  +++++  + G +K+A     ++  + +   W A+
Sbjct: 430 KRGQQIQDHIIEA---GYGSDDRVRTALLSMYAKCGSLKDAHRVFEKIS-KQNVVAWNAM 485

Query: 508 LGA 510
           + A
Sbjct: 486 ITA 488


>gi|449465002|ref|XP_004150218.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
 gi|449500809|ref|XP_004161200.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
          Length = 926

 Score =  330 bits (845), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 194/606 (32%), Positives = 323/606 (53%), Gaps = 28/606 (4%)

Query: 18  ITKYSKRGFIDEAKALFQLM----PQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNV 73
           I++YS  G   E+  LF+ M     + N  +++++L  F    R+ E R++   + +   
Sbjct: 223 ISEYSGSGNYGESINLFKQMLELGIKPNSYTFSSILKCFAAVARVEEGRQVHGLICKLGF 282

Query: 74  VSWTAMICGLAD---AGRVCE-ARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNS 129
            S+  ++  L      GR    A+KLF+E+ +R+V+SWNSM+ G ++NG  +   ++F  
Sbjct: 283 NSYNTVVNSLISFYFVGRKVRCAQKLFDELTDRDVISWNSMISGYVKNGLDDRGIEIFIK 342

Query: 130 MPIKNV-ISWNAMIAGYVECCMMGEAIV--------LFEEMEERNVVTWTSMISGYCRAG 180
           M +  V I    M+  +V C  +G  ++        +     +R V    +++  Y + G
Sbjct: 343 MLVFGVDIDLATMVNVFVACANIGTLLLGKVLHSYSIKAATLDREVRFNNTLLDMYSKCG 402

Query: 181 EVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNS 240
           ++     +F RM  K VVSWT+MI G+   G    ++ LF EMK     G   +V +  S
Sbjct: 403 DLNSAIRVFERMDEKTVVSWTSMITGYVREGLSDGAIKLFDEMKS---RGVVPDVYAVTS 459

Query: 241 MINGYIRFGRLEEAQNLFDTVPVRD----EISWTSMIDGYLSVGQVSNAYYLFHNMPDRD 296
           ++N     G L+  + + D +   +         ++ D Y   G + +A+ +F +M  +D
Sbjct: 460 ILNACAINGNLKSGKIVHDYIRENNLETNSFVSNALTDMYAKCGSMKDAHDVFSHMKKKD 519

Query: 297 AVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHC 356
            ++W  MI G  +N L  EA  LF EM+    P    T + +  A  + A +D GR+IH 
Sbjct: 520 VISWNTMIGGYTKNSLPNEALTLFAEMQRESKPD-GTTVACILPACASLAALDKGREIHG 578

Query: 357 VLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANE 416
             ++     D  + N ++ MY KCG++  A ++F  + ++DLVSW  M+ G+  HG  +E
Sbjct: 579 YALRNGYSEDKYVTNAVVDMYVKCGLLVLARSLFDMIPNKDLVSWTVMIAGYGMHGYGSE 638

Query: 417 TLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMI 476
            +  F  M  +G  P+ V+F+ IL ACSH+GL+  GW++FN M    +I+P  EHY  M+
Sbjct: 639 AINTFNQMRMTGIEPDEVSFISILYACSHSGLLDEGWKIFNIMKKECQIEPNLEHYACMV 698

Query: 477 NLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNA 536
           +LL R G + +A +F+  +P +PD  IWGALL  C     + ++AE  A+R+ EL+P N 
Sbjct: 699 DLLARTGNLVKAHKFIKAMPIKPDATIWGALLCGCRI-HHDVKLAEKVAERIFELEPENT 757

Query: 537 PAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGD--KIPAQ 594
             +V+L NIYA + +  E  KLR  +G +G++K PGCSW+   G I +F++GD  K  A+
Sbjct: 758 GYYVLLANIYAEAEKWEEVQKLRKKIGQRGLKKNPGCSWIEIKGKINIFVAGDCSKPQAK 817

Query: 595 VAEILL 600
             E+LL
Sbjct: 818 KIELLL 823



 Score =  163 bits (412), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 107/389 (27%), Positives = 190/389 (48%), Gaps = 46/389 (11%)

Query: 110 MVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEE----RN 165
           +V   ++ G+L E R VF+ +    +  WN MI+ Y      GE+I LF++M E     N
Sbjct: 191 LVFMYVKCGDLKEGRMVFDKLSESKIFLWNLMISEYSGSGNYGESINLFKQMLELGIKPN 250

Query: 166 VVTWTSMISGYCRAGEVEEG------YC-----------------------------LFR 190
             T++S++  +     VEEG       C                             LF 
Sbjct: 251 SYTFSSILKCFAAVARVEEGRQVHGLICKLGFNSYNTVVNSLISFYFVGRKVRCAQKLFD 310

Query: 191 RMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMK--GI-CDNGNNCNV-QSCNSMINGYI 246
            +  ++V+SW +MI G+  NG     + +FI+M   G+  D     NV  +C ++  G +
Sbjct: 311 ELTDRDVISWNSMISGYVKNGLDDRGIEIFIKMLVFGVDIDLATMVNVFVACANI--GTL 368

Query: 247 RFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISG 306
             G++  + ++      R+     +++D Y   G +++A  +F  M ++  V+WT+MI+G
Sbjct: 369 LLGKVLHSYSIKAATLDREVRFNNTLLDMYSKCGDLNSAIRVFERMDEKTVVSWTSMITG 428

Query: 307 LVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESD 366
            V+  L   A  LF EM++ GV P     + +  A     N+  G+ +H  + +   E++
Sbjct: 429 YVREGLSDGAIKLFDEMKSRGVVPDVYAVTSILNACAINGNLKSGKIVHDYIRENNLETN 488

Query: 367 LILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLE 426
             + N L  MYAKCG + +A+++FS+M  +D++SWN+M+ G++ + L NE L +F  M +
Sbjct: 489 SFVSNALTDMYAKCGSMKDAHDVFSHMKKKDVISWNTMIGGYTKNSLPNEALTLFAEM-Q 547

Query: 427 SGTHPNSVTFLGILSACSHAGLVSRGWEL 455
             + P+  T   IL AC+    + +G E+
Sbjct: 548 RESKPDGTTVACILPACASLAALDKGREI 576



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 67/267 (25%), Positives = 120/267 (44%), Gaps = 11/267 (4%)

Query: 233 CNVQSCNSMINGYIRFGRL-EEAQNLFDTVPVRDEISWTS-MIDG---------YLSVGQ 281
           C+ Q+ N  +  Y    +L  E +++ D   VR  I  +  MIDG         Y+  G 
Sbjct: 141 CSSQNSNFDLGAYCSILQLCAERKSIRDGRRVRSIIESSGVMIDGILGVKLVFMYVKCGD 200

Query: 282 VSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGA 341
           +     +F  + +     W  MIS    +  + E+  LF +M   G+ P + TFS +   
Sbjct: 201 LKEGRMVFDKLSESKIFLWNLMISEYSGSGNYGESINLFKQMLELGIKPNSYTFSSILKC 260

Query: 342 AGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSW 401
             A A ++ GRQ+H ++ K    S   + N LIS Y     +  A  +F  +  RD++SW
Sbjct: 261 FAAVARVEEGRQVHGLICKLGFNSYNTVVNSLISFYFVGRKVRCAQKLFDELTDRDVISW 320

Query: 402 NSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFD 461
           NSM+ G+  +GL +  +++F  ML  G   +  T + +  AC++ G +  G  L +    
Sbjct: 321 NSMISGYVKNGLDDRGIEIFIKMLVFGVDIDLATMVNVFVACANIGTLLLGKVLHSYSIK 380

Query: 462 VYKIQPGPEHYVSMINLLGRAGKIKEA 488
              +        +++++  + G +  A
Sbjct: 381 AATLDREVRFNNTLLDMYSKCGDLNSA 407


>gi|222637368|gb|EEE67500.1| hypothetical protein OsJ_24934 [Oryza sativa Japonica Group]
          Length = 830

 Score =  330 bits (845), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 193/609 (31%), Positives = 329/609 (54%), Gaps = 30/609 (4%)

Query: 15  TSSITKYSKRGFIDEAKALFQLMP--QRNVVSYNAMLSGFLQNGRLSEARRLFEEMP--- 69
           TS +   +  G + +A A F  +P  +R+ V +NAM+S F +    + A  +F  +    
Sbjct: 96  TSLVAAQAAAGRLRDAAAFFDAVPPARRDTVLHNAMMSAFARASLAAPAVSVFHALLGSG 155

Query: 70  --ERNVVSWTAMICGLAD-----AGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNE 122
               +  S+TA+I  +       A    +      +     V+S ++ ++ L    +  E
Sbjct: 156 SLRPDDYSFTALISAVGQMHNLAAPHCTQLHCSVLKSGAAAVLSVSNALIALYMKCDTPE 215

Query: 123 A----RKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCR 178
           A    RKV + MP K+ ++W  M+ GYV    +  A  +FEE++ +  V W +MISGY +
Sbjct: 216 ASWDARKVLDEMPDKDDLTWTTMVVGYVRRGDVNAARSVFEEVDGKFDVVWNAMISGYVQ 275

Query: 179 AGEVEEGYCLFRRMPRKNV----VSWTAMIGGFAWNGF--HKESL---LLFIEMKGICDN 229
           +G   + + LFRRM  + V     ++T+++   A  GF  H +S+   ++ ++   + + 
Sbjct: 276 SGMCADAFELFRRMVSEKVPLDEFTFTSVLSACANAGFFVHGKSVHGQIIRLQPNFVPEA 335

Query: 230 GNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLF 289
               N    N+++  Y + G++  A+ +FDT+ ++D +SW +++ GY+  G +  A  +F
Sbjct: 336 ALPVN----NALVTLYSKGGKIVIAKRIFDTMNLKDVVSWNTILSGYIDSGCLDKAVEVF 391

Query: 290 HNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANID 349
             MP ++ ++W  M+SG V   L  +A  LF +MRA  V P + T++    A G    + 
Sbjct: 392 KVMPYKNDLSWMVMVSGYVHGGLSEDALKLFNQMRAEDVKPCDYTYAGAIAACGELGALK 451

Query: 350 LGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFS 409
            GRQ+H  L++   E+     N L++MYAKCG +++A  +F  M + D VSWN+M+    
Sbjct: 452 HGRQLHAHLVQCGFEASNSAGNALLTMYAKCGAVNDARLVFLVMPNLDSVSWNAMISALG 511

Query: 410 HHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGP 469
            HG   E L++F+ M+  G  P+ ++FL IL+AC+HAGLV  G+  F +M   + I PG 
Sbjct: 512 QHGHGREALELFDQMVAEGIDPDRISFLTILTACNHAGLVDEGFHYFESMKRDFGISPGE 571

Query: 470 EHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLL 529
           +HY  +I+LLGR+G+I EA + +  +PFEP   IW A+L  C    G+ E   +AA +L 
Sbjct: 572 DHYARLIDLLGRSGRIGEARDLIKTMPFEPTPSIWEAILSGCR-TNGDMEFGAYAADQLF 630

Query: 530 ELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGD 589
            + P +   +++L N Y+A+GR V+  ++R  M  +GV+K PGCSW+     I +FL GD
Sbjct: 631 RMIPQHDGTYILLSNTYSAAGRWVDAARVRKLMRDRGVKKEPGCSWIEVGSKIHVFLVGD 690

Query: 590 KIPAQVAEI 598
               +  E+
Sbjct: 691 TKHPEAQEV 699



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 73/305 (23%), Positives = 135/305 (44%), Gaps = 50/305 (16%)

Query: 11  VVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPE 70
           VV   + ++ Y   G +D+A  +F++MP +N +S+  M+SG++  G   +A +LF +M  
Sbjct: 368 VVSWNTILSGYIDSGCLDKAVEVFKVMPYKNDLSWMVMVSGYVHGGLSEDALKLFNQMRA 427

Query: 71  RNV----VSWTAMICGLADAGRVCEARKLFEEMP----ERNVVSWNSMVVGLIRNGELNE 122
            +V     ++   I    + G +   R+L   +     E +  + N+++    + G +N+
Sbjct: 428 EDVKPCDYTYAGAIAACGELGALKHGRQLHAHLVQCGFEASNSAGNALLTMYAKCGAVND 487

Query: 123 ARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNV----VTWTSMISGYCR 178
           AR VF  MP  + +SWNAMI+   +     EA+ LF++M    +    +++ ++++    
Sbjct: 488 ARLVFLVMPNLDSVSWNAMISALGQHGHGREALELFDQMVAEGIDPDRISFLTILTACNH 547

Query: 179 AGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSC 238
           AG V+EG+  F  M R                                 D G +      
Sbjct: 548 AGLVDEGFHYFESMKR---------------------------------DFGISPGEDHY 574

Query: 239 NSMINGYIRFGRLEEAQNLFDTVPVRDEIS-WTSMIDGYLSVGQVSNAYY----LFHNMP 293
             +I+   R GR+ EA++L  T+P     S W +++ G  + G +    Y    LF  +P
Sbjct: 575 ARLIDLLGRSGRIGEARDLIKTMPFEPTPSIWEAILSGCRTNGDMEFGAYAADQLFRMIP 634

Query: 294 DRDAV 298
             D  
Sbjct: 635 QHDGT 639


>gi|32487551|emb|CAE03754.1| OSJNBa0013K16.3 [Oryza sativa Japonica Group]
          Length = 865

 Score =  330 bits (845), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 194/595 (32%), Positives = 319/595 (53%), Gaps = 13/595 (2%)

Query: 15  TSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVV 74
           T+ +  + + G++D A  LF  + +  +   N+ML+G+ +   +  A   FE+M ER+VV
Sbjct: 177 TALVDMFVRCGYVDFASRLFSQIERPTIFCRNSMLAGYAKLYGIDHAIEYFEDMAERDVV 236

Query: 75  SWTAMICGLADAGRVCEARKLFEEMPERNV----VSWNSMVVGLIRNGELNEAR----KV 126
           SW  MI  L+ +GRV EA  L  EM  + V     ++ S +    R   L   +    KV
Sbjct: 237 SWNMMIAALSQSGRVREALGLVVEMHRKGVRLDSTTYTSSLTACARLFSLGWGKQLHAKV 296

Query: 127 FNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGY 186
             S+P  +    +A+I  Y +C    EA  +F  +++RN V+WT +I G  +     +  
Sbjct: 297 IRSLPQIDPYVASALIELYAKCGSFKEAKRVFNSLQDRNSVSWTVLIGGSLQYECFSKSV 356

Query: 187 CLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGIC-DNGNNCNVQSCNSMINGY 245
            LF +M  + +      +       F++  L L  ++  +C  +G+N  +   NS+I+ Y
Sbjct: 357 ELFNQMRAELMAIDQFALATLISGCFNRMDLCLGRQLHSLCLKSGHNRAIVVSNSLISLY 416

Query: 246 IRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMIS 305
            + G L+ A+ +F ++  RD +SWTSMI  Y  +G +  A   F  M  R+A+ W AM+ 
Sbjct: 417 AKCGDLQNAEFVFSSMSERDIVSWTSMITAYSQIGNIIKAREFFDGMATRNAITWNAMLG 476

Query: 306 GLVQNELFVEATYLFMEMRAH-GVPPLNATFSVLF-GAAGATANIDLGRQIHCVLMKTES 363
             +Q+    +   ++  M +   V P   T+  LF G A   AN  LG QI    +K   
Sbjct: 477 AYIQHGAEEDGLKMYSAMLSQKDVTPDWVTYVTLFRGCADIGAN-KLGDQIIGHTVKAGL 535

Query: 364 ESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFES 423
             ++ + N  I+MY+KCG I  A  +F  +  +D+VSWN+M+ G+S HG+  +  K F+ 
Sbjct: 536 ILNVSVANAAITMYSKCGRISEAQKLFDLLNGKDVVSWNAMITGYSQHGMGKQAAKTFDD 595

Query: 424 MLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAG 483
           ML  G  P+ ++++ +LS CSH+GLV  G   F+ M  V+ I PG EH+  M++LLGRAG
Sbjct: 596 MLSKGAKPDYISYVAVLSGCSHSGLVQEGKLYFDMMTRVHGISPGLEHFSCMVDLLGRAG 655

Query: 484 KIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLC 543
            + EA++ + ++P +P   +WGALL AC    GN E+AE AAK + ELD  ++ ++++L 
Sbjct: 656 HLTEAKDLIDKMPMKPTAEVWGALLSACKI-HGNDELAELAAKHVFELDSPDSGSYMLLA 714

Query: 544 NIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
            IY+ +G+  +  ++R  M  KG++K PG SW+     + +F + D    QV  I
Sbjct: 715 KIYSDAGKSDDSAQVRKLMRDKGIKKNPGYSWMEVENKVHVFKADDVSHPQVIAI 769



 Score =  192 bits (487), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 136/528 (25%), Positives = 248/528 (46%), Gaps = 56/528 (10%)

Query: 14  LTSSITKYSKRGFIDEAKALFQLMPQRNVVS----YNAMLSGFLQNGRLSEARRLFE-EM 68
           L  ++     RG +  A+AL   +    + S     N +L  +L  G LS+ARRL   ++
Sbjct: 7   LADALRSCGSRGALAGARALHGRLVTVGLASAVFLQNTLLHAYLSCGALSDARRLLRADI 66

Query: 69  PERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFN 128
            E NV++   M+ G A  G + +A +LF+ MP R+V SWN+++ G  +     +  + F 
Sbjct: 67  KEPNVITHNIMMNGYAKQGSLSDAEELFDRMPRRDVASWNTLMSGYFQARRFLDGLETFV 126

Query: 129 SM-----PIKNVISW-----------------------------------NAMIAGYVEC 148
           SM      + N  ++                                    A++  +V C
Sbjct: 127 SMHRSGDSLPNAFTFCCVMKSCGALGCRELAPQLLGLFWKFDFWGDPDVETALVDMFVRC 186

Query: 149 CMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFA 208
             +  A  LF ++E   +    SM++GY +   ++     F  M  ++VVSW  MI   +
Sbjct: 187 GYVDFASRLFSQIERPTIFCRNSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALS 246

Query: 209 WNGFHKESLLLFIEM--KGICDNGN--NCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVR 264
            +G  +E+L L +EM  KG+  +      ++ +C  + +  + +G+   A+ +  ++P  
Sbjct: 247 QSGRVREALGLVVEMHRKGVRLDSTTYTSSLTACARLFS--LGWGKQLHAK-VIRSLPQI 303

Query: 265 DEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMR 324
           D    +++I+ Y   G    A  +F+++ DR++V+WT +I G +Q E F ++  LF +MR
Sbjct: 304 DPYVASALIELYAKCGSFKEAKRVFNSLQDRNSVSWTVLIGGSLQYECFSKSVELFNQMR 363

Query: 325 AHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVID 384
           A  +       + L        ++ LGRQ+H + +K+     +++ N LIS+YAKCG + 
Sbjct: 364 AELMAIDQFALATLISGCFNRMDLCLGRQLHSLCLKSGHNRAIVVSNSLISLYAKCGDLQ 423

Query: 385 NAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACS 444
           NA  +FS+M  RD+VSW SM+  +S  G   +  + F+ M       N++T+  +L A  
Sbjct: 424 NAEFVFSSMSERDIVSWTSMITAYSQIGNIIKAREFFDGMATR----NAITWNAMLGAYI 479

Query: 445 HAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFV 492
             G    G ++++AM     + P    YV++       G  K  ++ +
Sbjct: 480 QHGAEEDGLKMYSAMLSQKDVTPDWVTYVTLFRGCADIGANKLGDQII 527



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 77/276 (27%), Positives = 142/276 (51%), Gaps = 18/276 (6%)

Query: 3   ERNHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEAR 62
           +  H +++VV   S I+ Y+K G +  A+ +F  M +R++VS+ +M++ + Q G + +AR
Sbjct: 399 KSGHNRAIVVS-NSLISLYAKCGDLQNAEFVFSSMSERDIVSWTSMITAYSQIGNIIKAR 457

Query: 63  RLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVS--WNSMVVGLIRNGEL 120
             F+ M  RN ++W AM+      G   +  K++  M  +  V+  W + V  L R    
Sbjct: 458 EFFDGMATRNAITWNAMLGAYIQHGAEEDGLKMYSAMLSQKDVTPDWVTYVT-LFRGCAD 516

Query: 121 NEARKVFNSMP--------IKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSM 172
             A K+ + +         I NV   NA I  Y +C  + EA  LF+ +  ++VV+W +M
Sbjct: 517 IGANKLGDQIIGHTVKAGLILNVSVANAAITMYSKCGRISEAQKLFDLLNGKDVVSWNAM 576

Query: 173 ISGYCRAGEVEEGYCLFRRMPRK----NVVSWTAMIGGFAWNGFHKESLLLFIEMKGICD 228
           I+GY + G  ++    F  M  K    + +S+ A++ G + +G  +E  L F  M  +  
Sbjct: 577 ITGYSQHGMGKQAAKTFDDMLSKGAKPDYISYVAVLSGCSHSGLVQEGKLYFDMMTRV-- 634

Query: 229 NGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVR 264
           +G +  ++  + M++   R G L EA++L D +P++
Sbjct: 635 HGISPGLEHFSCMVDLLGRAGHLTEAKDLIDKMPMK 670


>gi|218195439|gb|EEC77866.1| hypothetical protein OsI_17132 [Oryza sativa Indica Group]
          Length = 865

 Score =  329 bits (844), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 194/595 (32%), Positives = 319/595 (53%), Gaps = 13/595 (2%)

Query: 15  TSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVV 74
           T+ +  + + G++D A  LF  + +  +   N+ML+G+ +   +  A   FE+M ER+VV
Sbjct: 177 TALVDMFVRCGYVDFASRLFSQIERPTIFCRNSMLAGYAKLYGIDHAIEYFEDMAERDVV 236

Query: 75  SWTAMICGLADAGRVCEARKLFEEMPERNV----VSWNSMVVGLIRNGELNEAR----KV 126
           SW  MI  L+ +GRV EA  L  EM  + V     ++ S +    R   L   +    KV
Sbjct: 237 SWNMMIAALSQSGRVREALGLVVEMHRKGVRLDSTTYTSSLTACARLFSLGWGKQLHAKV 296

Query: 127 FNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGY 186
             S+P  +    +A+I  Y +C    EA  +F  +++RN V+WT +I G  +     +  
Sbjct: 297 IRSLPQIDPYVASALIELYAKCGSFKEAKRVFNSLQDRNSVSWTVLIGGSLQYECFSKSV 356

Query: 187 CLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGIC-DNGNNCNVQSCNSMINGY 245
            LF +M  + +      +       F++  L L  ++  +C  +G+N  +   NS+I+ Y
Sbjct: 357 ELFNQMRAELMAIDQFALATLISGCFNRMDLCLGRQLHSLCLKSGHNRAIVVSNSLISLY 416

Query: 246 IRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMIS 305
            + G L+ A+ +F ++  RD +SWTSMI  Y  +G +  A   F  M  R+A+ W AM+ 
Sbjct: 417 AKCGDLQNAEFVFSSMSERDIVSWTSMITAYSQIGNIIKAREFFDGMDTRNAITWNAMLG 476

Query: 306 GLVQNELFVEATYLFMEMRAH-GVPPLNATFSVLF-GAAGATANIDLGRQIHCVLMKTES 363
             +Q+    +   ++  M +   V P   T+  LF G A   AN  LG QI    +K   
Sbjct: 477 AYIQHGAEEDGLKMYSAMLSQKDVTPDWVTYVTLFRGCADIGAN-KLGDQIIGHTVKAGL 535

Query: 364 ESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFES 423
             ++ + N  I+MY+KCG I  A  +F  +  +D+VSWN+M+ G+S HG+  +  K F+ 
Sbjct: 536 ILNVSVANAAITMYSKCGRISEAQKLFDLLNGKDVVSWNAMITGYSQHGMGKQAAKTFDD 595

Query: 424 MLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAG 483
           ML  G  P+ ++++ +LS CSH+GLV  G   F+ M  V+ I PG EH+  M++LLGRAG
Sbjct: 596 MLSKGAKPDYISYVAVLSGCSHSGLVQEGKLYFDMMTRVHGISPGLEHFSCMVDLLGRAG 655

Query: 484 KIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLC 543
            + EA++ + ++P +P   +WGALL AC    GN E+AE AAK + ELD  ++ ++++L 
Sbjct: 656 HLTEAKDLIDKMPMKPTAEVWGALLSACKI-HGNDELAELAAKHVFELDSPDSGSYMLLA 714

Query: 544 NIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
            IY+ +G+  +  ++R  M  KG++K PG SW+     + +F + D    QV  I
Sbjct: 715 KIYSDAGKSDDSAQVRKLMRDKGIKKNPGYSWMEVENKVHVFKADDVSHPQVIAI 769



 Score =  190 bits (482), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 135/528 (25%), Positives = 247/528 (46%), Gaps = 56/528 (10%)

Query: 14  LTSSITKYSKRGFIDEAKALFQLMPQRNVVS----YNAMLSGFLQNGRLSEARRLFE-EM 68
           L  ++     RG +  A+AL   +    + S     N +L  +   G LS+ARRL   ++
Sbjct: 7   LADALRSCGSRGALAGARALHGRLVTVGLASAVFLQNTLLHAYFSCGALSDARRLLRADI 66

Query: 69  PERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFN 128
            E NV++   M+ G A  G + +A +LF+ MP R+V SWN+++ G  +     +  + F 
Sbjct: 67  KEPNVITHNIMMNGYAKQGSLSDAEELFDRMPRRDVASWNTLMSGYFQARRFLDGLETFV 126

Query: 129 SM-----PIKNVISW-----------------------------------NAMIAGYVEC 148
           SM      + N  ++                                    A++  +V C
Sbjct: 127 SMHRSGDSLPNAFTFCCVMKSCGALGCRELAPQLLGLFWKFDFWGDPDVETALVDMFVRC 186

Query: 149 CMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFA 208
             +  A  LF ++E   +    SM++GY +   ++     F  M  ++VVSW  MI   +
Sbjct: 187 GYVDFASRLFSQIERPTIFCRNSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALS 246

Query: 209 WNGFHKESLLLFIEM--KGICDNGN--NCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVR 264
            +G  +E+L L +EM  KG+  +      ++ +C  + +  + +G+   A+ +  ++P  
Sbjct: 247 QSGRVREALGLVVEMHRKGVRLDSTTYTSSLTACARLFS--LGWGKQLHAK-VIRSLPQI 303

Query: 265 DEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMR 324
           D    +++I+ Y   G    A  +F+++ DR++V+WT +I G +Q E F ++  LF +MR
Sbjct: 304 DPYVASALIELYAKCGSFKEAKRVFNSLQDRNSVSWTVLIGGSLQYECFSKSVELFNQMR 363

Query: 325 AHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVID 384
           A  +       + L        ++ LGRQ+H + +K+     +++ N LIS+YAKCG + 
Sbjct: 364 AELMAIDQFALATLISGCFNRMDLCLGRQLHSLCLKSGHNRAIVVSNSLISLYAKCGDLQ 423

Query: 385 NAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACS 444
           NA  +FS+M  RD+VSW SM+  +S  G   +  + F+ M       N++T+  +L A  
Sbjct: 424 NAEFVFSSMSERDIVSWTSMITAYSQIGNIIKAREFFDGM----DTRNAITWNAMLGAYI 479

Query: 445 HAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFV 492
             G    G ++++AM     + P    YV++       G  K  ++ +
Sbjct: 480 QHGAEEDGLKMYSAMLSQKDVTPDWVTYVTLFRGCADIGANKLGDQII 527



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 77/276 (27%), Positives = 142/276 (51%), Gaps = 18/276 (6%)

Query: 3   ERNHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEAR 62
           +  H +++VV   S I+ Y+K G +  A+ +F  M +R++VS+ +M++ + Q G + +AR
Sbjct: 399 KSGHNRAIVVS-NSLISLYAKCGDLQNAEFVFSSMSERDIVSWTSMITAYSQIGNIIKAR 457

Query: 63  RLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVS--WNSMVVGLIRNGEL 120
             F+ M  RN ++W AM+      G   +  K++  M  +  V+  W + V  L R    
Sbjct: 458 EFFDGMDTRNAITWNAMLGAYIQHGAEEDGLKMYSAMLSQKDVTPDWVTYVT-LFRGCAD 516

Query: 121 NEARKVFNSMP--------IKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSM 172
             A K+ + +         I NV   NA I  Y +C  + EA  LF+ +  ++VV+W +M
Sbjct: 517 IGANKLGDQIIGHTVKAGLILNVSVANAAITMYSKCGRISEAQKLFDLLNGKDVVSWNAM 576

Query: 173 ISGYCRAGEVEEGYCLFRRMPRK----NVVSWTAMIGGFAWNGFHKESLLLFIEMKGICD 228
           I+GY + G  ++    F  M  K    + +S+ A++ G + +G  +E  L F  M  +  
Sbjct: 577 ITGYSQHGMGKQAAKTFDDMLSKGAKPDYISYVAVLSGCSHSGLVQEGKLYFDMMTRV-- 634

Query: 229 NGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVR 264
           +G +  ++  + M++   R G L EA++L D +P++
Sbjct: 635 HGISPGLEHFSCMVDLLGRAGHLTEAKDLIDKMPMK 670


>gi|449470104|ref|XP_004152758.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
 gi|449504088|ref|XP_004162249.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
          Length = 797

 Score =  329 bits (844), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 195/640 (30%), Positives = 323/640 (50%), Gaps = 88/640 (13%)

Query: 46  NAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMP--ERN 103
           N ++  + ++     AR+LF+E+P+ +V++ T +I   +  G +  AR++F E P   R+
Sbjct: 52  NRLIDIYWKSSDFVYARKLFDEIPQPDVIARTTLITAYSALGNLKMAREIFNETPLDMRD 111

Query: 104 VVSWNSMVVGLIRNGELNEARKVFNSMPIKN----------VIS---------------- 137
            V +N+M+ G     + + A ++F +M   N          V+S                
Sbjct: 112 TVFYNAMITGYSHMNDGHSAIELFRAMRWANFQPDDFTFASVLSASTLIFYDERQCGQMH 171

Query: 138 --------------WNAMIAGYVECCM---------MGEAIVLFEEMEERNVVTWTSMIS 174
                          NA+++ YV+C           M  A  LF+EM +RN   WT++I+
Sbjct: 172 GTVVKFGIEIFPAVLNALLSVYVKCASSPLVSSSSLMASARKLFDEMPKRNEFIWTTLIT 231

Query: 175 GYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMK---------- 224
           GY R G++     +   M  +  ++W AMI G+  +G  +++L LF +M+          
Sbjct: 232 GYVRNGDLTGAREILDTMTEQPGIAWNAMISGYLHHGLFEDALTLFRKMRLLGVQVDEST 291

Query: 225 -----GICDNG---------------NNCN------VQSCNSMINGYIRFGRLEEAQNLF 258
                  C +G               N  N      +   N++I  Y ++G+++ A+ +F
Sbjct: 292 YTSVISACADGGFFLLGKQVHAYILKNELNPDRDFLLSVGNTLITLYWKYGKVDGARKIF 351

Query: 259 DTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATY 318
             +PV+D I+W +++ GY++ G++  A   F  MP+++ + WT MISGL QN    +A  
Sbjct: 352 YEMPVKDIITWNTLLSGYVNAGRMEEAKSFFAQMPEKNLLTWTVMISGLAQNGFGEQALK 411

Query: 319 LFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYA 378
           LF +M+  G  P +  F+    A      ++ GRQ+H  ++    +S L + N +I+MYA
Sbjct: 412 LFNQMKLDGYEPNDYAFAGAITACSVLGALENGRQLHAQIVHLGHDSTLSVGNAMITMYA 471

Query: 379 KCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLG 438
           +CG+++ A  +F  M   D VSWNSM+     HG   + ++++E ML+ G  P+  TFL 
Sbjct: 472 RCGIVEAARTMFLTMPFVDPVSWNSMIAALGQHGHGVKAIELYEQMLKEGILPDRRTFLT 531

Query: 439 ILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFE 498
           +LSACSHAGLV  G   FN+M + Y I PG +HY  MI+L  RAGK  +A+  +  +PFE
Sbjct: 532 VLSACSHAGLVEEGNRYFNSMLENYGIAPGEDHYARMIDLFCRAGKFSDAKNVIDSMPFE 591

Query: 499 PDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKL 558
               IW ALL  C    GN ++   AA++L +L P +   +V+L N+YA+ GR  +  + 
Sbjct: 592 ARAPIWEALLAGCR-THGNMDLGIEAAEKLFKLIPQHDGTYVLLSNMYASLGRWNDVART 650

Query: 559 RMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
           R  M  +GV+K P CSW      + +FL  D +  +V  I
Sbjct: 651 RKLMRDRGVKKEPACSWTEVENKVHVFLVDDTVHPEVLSI 690



 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 98/362 (27%), Positives = 159/362 (43%), Gaps = 73/362 (20%)

Query: 30  AKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRV 89
           A+ LF  MP+RN   +  +++G+++NG L+ AR + + M E+  ++W AMI G    G  
Sbjct: 211 ARKLFDEMPKRNEFIWTTLITGYVRNGDLTGAREILDTMTEQPGIAWNAMISGYLHHGLF 270

Query: 90  CEARKLFEEM-----------------------------------------PERNVV--S 106
            +A  LF +M                                         P+R+ +   
Sbjct: 271 EDALTLFRKMRLLGVQVDESTYTSVISACADGGFFLLGKQVHAYILKNELNPDRDFLLSV 330

Query: 107 WNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNV 166
            N+++    + G+++ ARK+F  MP+K++I+WN +++GYV    M EA   F +M E+N+
Sbjct: 331 GNTLITLYWKYGKVDGARKIFYEMPVKDIITWNTLLSGYVNAGRMEEAKSFFAQMPEKNL 390

Query: 167 VTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGI 226
           +TWT MISG  + G  E+   LF +M           + G+  N +     +    + G 
Sbjct: 391 LTWTVMISGLAQNGFGEQALKLFNQMK----------LDGYEPNDYAFAGAITACSVLGA 440

Query: 227 CDNGNNCNVQSC-----------NSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDG 275
            +NG   + Q             N+MI  Y R G +E A+ +F T+P  D +SW SMI  
Sbjct: 441 LENGRQLHAQIVHLGHDSTLSVGNAMITMYARCGIVEAARTMFLTMPFVDPVSWNSMIAA 500

Query: 276 YLSVGQVSNAYYLFHNM------PDRDAVAWTAMISGLVQNELFVEATYLFMEM-RAHGV 328
               G    A  L+  M      PDR    +  ++S      L  E    F  M   +G+
Sbjct: 501 LGQHGHGVKAIELYEQMLKEGILPDRR--TFLTVLSACSHAGLVEEGNRYFNSMLENYGI 558

Query: 329 PP 330
            P
Sbjct: 559 AP 560



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 87/329 (26%), Positives = 146/329 (44%), Gaps = 81/329 (24%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWT 77
           IT Y K G +D A+ +F  MP ++++++N +LSG++  GR+ EA+  F +MPE+N+++WT
Sbjct: 335 ITLYWKYGKVDGARKIFYEMPVKDIITWNTLLSGYVNAGRMEEAKSFFAQMPEKNLLTWT 394

Query: 78  AMICGLADAGRVCEARKLFEEMP----ERNVVSW-------------------------- 107
            MI GLA  G   +A KLF +M     E N  ++                          
Sbjct: 395 VMISGLAQNGFGEQALKLFNQMKLDGYEPNDYAFAGAITACSVLGALENGRQLHAQIVHL 454

Query: 108 ---------NSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLF 158
                    N+M+    R G +  AR +F +MP  + +SWN+MIA   +     +AI L+
Sbjct: 455 GHDSTLSVGNAMITMYARCGIVEAARTMFLTMPFVDPVSWNSMIAALGQHGHGVKAIELY 514

Query: 159 EEMEERNVV----TWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHK 214
           E+M +  ++    T+ +++S    AG VEEG   F  M                      
Sbjct: 515 EQMLKEGILPDRRTFLTVLSACSHAGLVEEGNRYFNSM---------------------- 552

Query: 215 ESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEIS-WTSMI 273
                 +E  GI    ++        MI+ + R G+  +A+N+ D++P       W +++
Sbjct: 553 ------LENYGIAPGEDH-----YARMIDLFCRAGKFSDAKNVIDSMPFEARAPIWEALL 601

Query: 274 DGYLSVGQ----VSNAYYLFHNMPDRDAV 298
            G  + G     +  A  LF  +P  D  
Sbjct: 602 AGCRTHGNMDLGIEAAEKLFKLIPQHDGT 630


>gi|125591422|gb|EAZ31772.1| hypothetical protein OsJ_15924 [Oryza sativa Japonica Group]
          Length = 855

 Score =  329 bits (844), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 194/595 (32%), Positives = 319/595 (53%), Gaps = 13/595 (2%)

Query: 15  TSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVV 74
           T+ +  + + G++D A  LF  + +  +   N+ML+G+ +   +  A   FE+M ER+VV
Sbjct: 167 TALVDMFVRCGYVDFASRLFSQIERPTIFCRNSMLAGYAKLYGIDHAIEYFEDMAERDVV 226

Query: 75  SWTAMICGLADAGRVCEARKLFEEMPERNV----VSWNSMVVGLIRNGELNEAR----KV 126
           SW  MI  L+ +GRV EA  L  EM  + V     ++ S +    R   L   +    KV
Sbjct: 227 SWNMMIAALSQSGRVREALGLVVEMHRKGVRLDSTTYTSSLTACARLFSLGWGKQLHAKV 286

Query: 127 FNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGY 186
             S+P  +    +A+I  Y +C    EA  +F  +++RN V+WT +I G  +     +  
Sbjct: 287 IRSLPQIDPYVASALIELYAKCGSFKEAKRVFNSLQDRNSVSWTVLIGGSLQYECFSKSV 346

Query: 187 CLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGIC-DNGNNCNVQSCNSMINGY 245
            LF +M  + +      +       F++  L L  ++  +C  +G+N  +   NS+I+ Y
Sbjct: 347 ELFNQMRAELMAIDQFALATLISGCFNRMDLCLGRQLHSLCLKSGHNRAIVVSNSLISLY 406

Query: 246 IRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMIS 305
            + G L+ A+ +F ++  RD +SWTSMI  Y  +G +  A   F  M  R+A+ W AM+ 
Sbjct: 407 AKCGDLQNAEFVFSSMSERDIVSWTSMITAYSQIGNIIKAREFFDGMATRNAITWNAMLG 466

Query: 306 GLVQNELFVEATYLFMEMRAH-GVPPLNATFSVLF-GAAGATANIDLGRQIHCVLMKTES 363
             +Q+    +   ++  M +   V P   T+  LF G A   AN  LG QI    +K   
Sbjct: 467 AYIQHGAEEDGLKMYSAMLSQKDVTPDWVTYVTLFRGCADIGAN-KLGDQIIGHTVKAGL 525

Query: 364 ESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFES 423
             ++ + N  I+MY+KCG I  A  +F  +  +D+VSWN+M+ G+S HG+  +  K F+ 
Sbjct: 526 ILNVSVANAAITMYSKCGRISEAQKLFDLLNGKDVVSWNAMITGYSQHGMGKQAAKTFDD 585

Query: 424 MLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAG 483
           ML  G  P+ ++++ +LS CSH+GLV  G   F+ M  V+ I PG EH+  M++LLGRAG
Sbjct: 586 MLSKGAKPDYISYVAVLSGCSHSGLVQEGKLYFDMMTRVHGISPGLEHFSCMVDLLGRAG 645

Query: 484 KIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLC 543
            + EA++ + ++P +P   +WGALL AC    GN E+AE AAK + ELD  ++ ++++L 
Sbjct: 646 HLTEAKDLIDKMPMKPTAEVWGALLSACKI-HGNDELAELAAKHVFELDSPDSGSYMLLA 704

Query: 544 NIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
            IY+ +G+  +  ++R  M  KG++K PG SW+     + +F + D    QV  I
Sbjct: 705 KIYSDAGKSDDSAQVRKLMRDKGIKKNPGYSWMEVENKVHVFKADDVSHPQVIAI 759



 Score =  172 bits (437), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 127/501 (25%), Positives = 227/501 (45%), Gaps = 77/501 (15%)

Query: 21  YSKRGFIDEAKALFQL-MPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAM 79
           Y   G + +A+ L +  + + NV+++N M++G+ + G LS+A  LF+ MP R+V SW  +
Sbjct: 65  YLSCGALSDARRLLRADIKEPNVITHNIMMNGYAKQGSLSDAEELFDRMPRRDVASWNTL 124

Query: 80  ICGLADAGR------VCEARKLFEEMPERNVVSW-----------NSMVVGLIRNGELNE 122
              ++D  R       C A    E  P+   + W            ++V   +R G ++ 
Sbjct: 125 ---MSDTSRPAGSWMSCGALGCRELAPQLLGLFWKFDFWGDPDVETALVDMFVRCGYVDF 181

Query: 123 ARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEV 182
           A ++F+ +    +   N+M+AGY +   +  AI  FE+M ER+VV+W  MI+   ++G V
Sbjct: 182 ASRLFSQIERPTIFCRNSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQSGRV 241

Query: 183 EEGYCLFRRMPRKNV----------VSWTAMIGGFAW-NGFHKESLLLFIEMKGICDNGN 231
            E   L   M RK V          ++  A +    W    H + +    ++        
Sbjct: 242 REALGLVVEMHRKGVRLDSTTYTSSLTACARLFSLGWGKQLHAKVIRSLPQI-------- 293

Query: 232 NCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHN 291
             +    +++I  Y + G  +EA+ +F+++  R+ +SWT +I G L              
Sbjct: 294 --DPYVASALIELYAKCGSFKEAKRVFNSLQDRNSVSWTVLIGGSL-------------- 337

Query: 292 MPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLG 351
                            Q E F ++  LF +MRA  +       + L        ++ LG
Sbjct: 338 -----------------QYECFSKSVELFNQMRAELMAIDQFALATLISGCFNRMDLCLG 380

Query: 352 RQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHH 411
           RQ+H + +K+     +++ N LIS+YAKCG + NA  +FS+M  RD+VSW SM+  +S  
Sbjct: 381 RQLHSLCLKSGHNRAIVVSNSLISLYAKCGDLQNAEFVFSSMSERDIVSWTSMITAYSQI 440

Query: 412 GLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEH 471
           G   +  + F+ M       N++T+  +L A    G    G ++++AM     + P    
Sbjct: 441 GNIIKAREFFDGMATR----NAITWNAMLGAYIQHGAEEDGLKMYSAMLSQKDVTPDWVT 496

Query: 472 YVSMINLLGRAGKIKEAEEFV 492
           YV++       G  K  ++ +
Sbjct: 497 YVTLFRGCADIGANKLGDQII 517



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 94/390 (24%), Positives = 184/390 (47%), Gaps = 30/390 (7%)

Query: 139 NAMIAGYVECCMMGEAIVLFE-EMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNV 197
           N ++  Y+ C  + +A  L   +++E NV+T   M++GY + G + +   LF RMPR++V
Sbjct: 59  NTLLHAYLSCGALSDARRLLRADIKEPNVITHNIMMNGYAKQGSLSDAEELFDRMPRRDV 118

Query: 198 VSWTAMI-------------GGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMING 244
            SW  ++             G         + L LF +     D   + +V++  ++++ 
Sbjct: 119 ASWNTLMSDTSRPAGSWMSCGALGCRELAPQLLGLFWKF----DFWGDPDVET--ALVDM 172

Query: 245 YIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMI 304
           ++R G ++ A  LF  +         SM+ GY  +  + +A   F +M +RD V+W  MI
Sbjct: 173 FVRCGYVDFASRLFSQIERPTIFCRNSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMI 232

Query: 305 SGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESE 364
           + L Q+    EA  L +EM   GV   + T++    A     ++  G+Q+H  ++++  +
Sbjct: 233 AALSQSGRVREALGLVVEMHRKGVRLDSTTYTSSLTACARLFSLGWGKQLHAKVIRSLPQ 292

Query: 365 SDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESM 424
            D  + + LI +YAKCG    A  +F+++  R+ VSW  ++ G   +   ++++++F  M
Sbjct: 293 IDPYVASALIELYAKCGSFKEAKRVFNSLQDRNSVSWTVLIGGSLQYECFSKSVELFNQM 352

Query: 425 LESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYV----SMINLLG 480
                  +      ++S C +   +  G +L +       ++ G    +    S+I+L  
Sbjct: 353 RAELMAIDQFALATLISGCFNRMDLCLGRQLHSLC-----LKSGHNRAIVVSNSLISLYA 407

Query: 481 RAGKIKEAEEFVLRLPFEPDHRIWGALLGA 510
           + G ++ A EFV     E D   W +++ A
Sbjct: 408 KCGDLQNA-EFVFSSMSERDIVSWTSMITA 436



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 77/276 (27%), Positives = 142/276 (51%), Gaps = 18/276 (6%)

Query: 3   ERNHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEAR 62
           +  H +++VV   S I+ Y+K G +  A+ +F  M +R++VS+ +M++ + Q G + +AR
Sbjct: 389 KSGHNRAIVVS-NSLISLYAKCGDLQNAEFVFSSMSERDIVSWTSMITAYSQIGNIIKAR 447

Query: 63  RLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVS--WNSMVVGLIRNGEL 120
             F+ M  RN ++W AM+      G   +  K++  M  +  V+  W + V  L R    
Sbjct: 448 EFFDGMATRNAITWNAMLGAYIQHGAEEDGLKMYSAMLSQKDVTPDWVTYVT-LFRGCAD 506

Query: 121 NEARKVFNSMP--------IKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSM 172
             A K+ + +         I NV   NA I  Y +C  + EA  LF+ +  ++VV+W +M
Sbjct: 507 IGANKLGDQIIGHTVKAGLILNVSVANAAITMYSKCGRISEAQKLFDLLNGKDVVSWNAM 566

Query: 173 ISGYCRAGEVEEGYCLFRRMPRK----NVVSWTAMIGGFAWNGFHKESLLLFIEMKGICD 228
           I+GY + G  ++    F  M  K    + +S+ A++ G + +G  +E  L F  M  +  
Sbjct: 567 ITGYSQHGMGKQAAKTFDDMLSKGAKPDYISYVAVLSGCSHSGLVQEGKLYFDMMTRV-- 624

Query: 229 NGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVR 264
           +G +  ++  + M++   R G L EA++L D +P++
Sbjct: 625 HGISPGLEHFSCMVDLLGRAGHLTEAKDLIDKMPMK 660


>gi|218197545|gb|EEC79972.1| hypothetical protein OsI_21597 [Oryza sativa Indica Group]
          Length = 731

 Score =  328 bits (842), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 190/589 (32%), Positives = 302/589 (51%), Gaps = 47/589 (7%)

Query: 27  IDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADA 86
           + +A+  F  MP RNVVS+ AM+ G      +  A +LF+ MP +N VSW  MI G    
Sbjct: 151 VGDARKAFDRMPVRNVVSWTAMIKGHFTVHEVDMAFQLFKLMPVKNSVSWCVMIGGFVTH 210

Query: 87  GRVCEARKLF-------EEMPERNVVSWNSMVVGL--IRNG------------------- 118
            +  EA +LF       EE+    +V   +   G+  IR G                   
Sbjct: 211 EKFSEAVELFNSLMMNGEEVTNVILVKIVNAFAGMKSIRGGRCIHGLAVKSGFAYDLVLE 270

Query: 119 -----------ELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVV 167
                      ++ EAR  F+ M   +V SWNAM+ GY+    + EA  LF+ M  R+ +
Sbjct: 271 ASLVLMYCKSLDITEARLEFDKMEGNHVGSWNAMLCGYIYSDKIDEARKLFDSMNNRDKI 330

Query: 168 TWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGIC 227
           +W SMI+GY   G + +   L+ +M  K++ + TA++  F  NG   ++  +F  M  I 
Sbjct: 331 SWNSMINGYINDGRIADATELYSKMTEKSLEAATALMSWFIDNGMLDKARDMFYNMPQI- 389

Query: 228 DNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYY 287
                 +V SC +++ GY++ G +++A +LF  +  R  +++  MI G    G+++ AY 
Sbjct: 390 ------DVMSCTTLLFGYVKGGHMDDALDLFHMMQKRTVVTYNVMISGLFHQGKITEAYK 443

Query: 288 LFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATAN 347
           LF+  P RD+V W+ +++GL  N L  EA   + +M    + P  +  S L       + 
Sbjct: 444 LFNESPTRDSVTWSCLVAGLATNGLIHEALQFYKKMLLSNIRPSESVVSSLISCLSNYSM 503

Query: 348 IDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMG 407
           +  G+Q H   +K   +S L+++N LIS+Y KCG +  A +IF  M  RD V+WN+++ G
Sbjct: 504 MVHGQQFHATTIKIGLDSHLLIQNSLISLYCKCGEMIIAQSIFDLMAKRDKVTWNTIIHG 563

Query: 408 FSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQP 467
           ++ + L    +++FESM ++   P+ +TFLG+LSAC+H  L+      FNAM   Y I P
Sbjct: 564 YALNNLGQNAVEMFESMTKAQVDPDDITFLGVLSACNHMSLLEEAKYFFNAMTCTYGILP 623

Query: 468 GPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKR 527
              HY  M++L  R   IKEAE  V  +PFEPD  IW +LL  C    GN ++AEHAA +
Sbjct: 624 NIMHYACMVDLFCRKCMIKEAEGLVKSMPFEPDSAIWTSLLSGCRL-TGNDKLAEHAASQ 682

Query: 528 LLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWL 576
           L+ +DP     ++ L +++  + +      LR  +      K  G SW+
Sbjct: 683 LIAIDPCTKMPYLHLISVHGLTNKSTVIDSLRSQIKSTATEKDVGYSWI 731



 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 134/488 (27%), Positives = 218/488 (44%), Gaps = 58/488 (11%)

Query: 46  NAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEM------ 99
           N +++  L+ GRL  AR +F+ MP R+VVSW  ++   A AG    A   F EM      
Sbjct: 39  NRLMAEHLRAGRLEAAREVFDGMPRRDVVSWNTIMAVQARAGSHGRAVGAFLEMRRQGFR 98

Query: 100 PERNVVSWNSMVVGLIRNGELNEA-RKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLF 158
           P+    S        +   E+     +V + +   NV  WNA+I+G V    +G+A   F
Sbjct: 99  PDHTSFSTALSACARLEALEMGSCLEQVLDGVESPNVALWNALISGLVMNHRVGDARKAF 158

Query: 159 EEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLL 218
           + M  RNVV+WT+MI G+    EV+  + LF+ MP KN VSW  MIGGF  +    E++ 
Sbjct: 159 DRMPVRNVVSWTAMIKGHFTVHEVDMAFQLFKLMPVKNSVSWCVMIGGFVTHEKFSEAVE 218

Query: 219 LFIEMKGICDNGNNCNVQSCNSMINGY-----IRFGR----------------------- 250
           LF     +  NG          ++N +     IR GR                       
Sbjct: 219 LF---NSLMMNGEEVTNVILVKIVNAFAGMKSIRGGRCIHGLAVKSGFAYDLVLEASLVL 275

Query: 251 -------LEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAM 303
                  + EA+  FD +      SW +M+ GY+   ++  A  LF +M +RD ++W +M
Sbjct: 276 MYCKSLDITEARLEFDKMEGNHVGSWNAMLCGYIYSDKIDEARKLFDSMNNRDKISWNSM 335

Query: 304 ISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTES 363
           I+G + +    +AT L+ +M    +    A  S           +D  R     +     
Sbjct: 336 INGYINDGRIADATELYSKMTEKSLEAATALMSWFID----NGMLDKARD----MFYNMP 387

Query: 364 ESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFES 423
           + D++    L+  Y K G +D+A ++F  M  R +V++N M+ G  H G   E  K+F  
Sbjct: 388 QIDVMSCTTLLFGYVKGGHMDDALDLFHMMQKRTVVTYNVMISGLFHQGKITEAYKLFN- 446

Query: 424 MLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAG 483
             ES T  +SVT+  +++  +  GL+    + +  M  +  I+P      S+I+ L    
Sbjct: 447 --ESPTR-DSVTWSCLVAGLATNGLIHEALQFYKKML-LSNIRPSESVVSSLISCLSNYS 502

Query: 484 KIKEAEEF 491
            +   ++F
Sbjct: 503 MMVHGQQF 510



 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 81/284 (28%), Positives = 145/284 (51%), Gaps = 15/284 (5%)

Query: 5   NHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRL 64
           N P+  V+  T+ +  Y K G +D+A  LF +M +R VV+YN M+SG    G+++EA +L
Sbjct: 385 NMPQIDVMSCTTLLFGYVKGGHMDDALDLFHMMQKRTVVTYNVMISGLFHQGKITEAYKL 444

Query: 65  FEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLI---RNGELN 121
           F E P R+ V+W+ ++ GLA  G + EA + +++M   N+    S+V  LI    N  + 
Sbjct: 445 FNESPTRDSVTWSCLVAGLATNGLIHEALQFYKKMLLSNIRPSESVVSSLISCLSNYSMM 504

Query: 122 EARKVFNSMPIK-----NVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGY 176
              + F++  IK     +++  N++I+ Y +C  M  A  +F+ M +R+ VTW ++I GY
Sbjct: 505 VHGQQFHATTIKIGLDSHLLIQNSLISLYCKCGEMIIAQSIFDLMAKRDKVTWNTIIHGY 564

Query: 177 CRAGEVEEGYCLFRRMPRKNV----VSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNN 232
                 +    +F  M +  V    +++  ++         +E+   F  M   C  G  
Sbjct: 565 ALNNLGQNAVEMFESMTKAQVDPDDITFLGVLSACNHMSLLEEAKYFFNAMT--CTYGIL 622

Query: 233 CNVQSCNSMINGYIRFGRLEEAQNLFDTVPVR-DEISWTSMIDG 275
            N+     M++ + R   ++EA+ L  ++P   D   WTS++ G
Sbjct: 623 PNIMHYACMVDLFCRKCMIKEAEGLVKSMPFEPDSAIWTSLLSG 666


>gi|225432514|ref|XP_002277532.1| PREDICTED: pentatricopeptide repeat-containing protein At5g19020,
           mitochondrial [Vitis vinifera]
          Length = 694

 Score =  328 bits (842), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 214/602 (35%), Positives = 311/602 (51%), Gaps = 45/602 (7%)

Query: 16  SSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVS 75
           S I+ Y K   I  A++LF      + VS N ML+G++++G L  AR LFE+MP +  VS
Sbjct: 92  SLISFYVKCRLISNARSLFDTCSVLDPVSCNIMLAGYVKSGSLDNARHLFEKMPIKGCVS 151

Query: 76  WTAMICGLADAGRVCEARKLFEEMPERNV----VSWNSMV-----VGLIRNGELNEARKV 126
           +T M+ GLA      EA  +F++M    V    V+  S++     VG I N  +  A   
Sbjct: 152 YTTMVMGLAQNNCWLEAIGVFKDMRFAGVIPNEVTLASVISAYSHVGGILNCRMLHALSF 211

Query: 127 FNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGY 186
              +   N+++ N ++  Y  C  +G A VLF+E+ ERNVVTW  M++GY ++G V+   
Sbjct: 212 KLGLEALNIVATN-LVHMYCVCSSLGNARVLFDEIPERNVVTWNVMLNGYSKSGLVDLAR 270

Query: 187 CLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEM--KGICDN--------------- 229
            LF R+P K+VVSW  +I G+       E+L ++  M   G+  N               
Sbjct: 271 DLFERIPAKDVVSWGTIIDGYVQIERLGEALRMYRSMLRTGVGPNEVMIVDLISACGRTM 330

Query: 230 ---------------GNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMID 274
                          G +C      ++I+ Y   G +  A   F+        SW ++I 
Sbjct: 331 AVSEGQQFHGIIVRTGFDCYDFIQATIIHFYAACGEINLAFLQFELGSKDHVSSWNALIS 390

Query: 275 GYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNAT 334
           G++  G +  A  LF  MP+RD  +W++MISG  QNE    A  LF EM A GV P   T
Sbjct: 391 GFVRNGMIEQARQLFDEMPERDVFSWSSMISGYSQNEQPDLALQLFHEMVAGGVQPNEIT 450

Query: 335 FSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMV 394
              +F A      +  GR  H  ++      +  L   LI MYAKCG I  A  +F  + 
Sbjct: 451 MVSVFSAIATLGTLMEGRWAHEYILSNSIPLNDNLNAALIDMYAKCGSITIALQLFYEIQ 510

Query: 395 SR--DLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRG 452
            R   +  WN+++ G + HG AN +LK+F  +      PNS+TF+G+LSAC HAGLV  G
Sbjct: 511 DRVSSVSPWNAIICGLAMHGHANVSLKLFSQLQRVRIKPNSITFIGVLSACCHAGLVDTG 570

Query: 453 WELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACG 512
            + F  M ++Y I+P  +HY  MI+LLGRAG++KEA E + ++P + D  IWG LL AC 
Sbjct: 571 EKYFKGMKNLYNIEPNIKHYGCMIDLLGRAGRLKEAAEMIRKMPMKADVVIWGTLLAACR 630

Query: 513 FCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPG 572
              GN EI E AA+ L +LD  +    V+L NIYA +GR  +   +R  M  + ++K PG
Sbjct: 631 -THGNVEIGERAAENLAKLDISHGAGRVLLSNIYADAGRWDDAFLVRRAMQSQRMKKSPG 689

Query: 573 CS 574
           CS
Sbjct: 690 CS 691



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 121/466 (25%), Positives = 206/466 (44%), Gaps = 78/466 (16%)

Query: 126 VFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEG 185
           VF S  + N+   N++I+ YV+C ++  A  LF+     + V+   M++GY ++G ++  
Sbjct: 78  VFKSGLLSNIFVKNSLISFYVKCRLISNARSLFDTCSVLDPVSCNIMLAGYVKSGSLDNA 137

Query: 186 YCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMK--GICDNGN------------ 231
             LF +MP K  VS+T M+ G A N    E++ +F +M+  G+  N              
Sbjct: 138 RHLFEKMPIKGCVSYTTMVMGLAQNNCWLEAIGVFKDMRFAGVIPNEVTLASVISAYSHV 197

Query: 232 ----NC---------------NVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSM 272
               NC               N+ + N +++ Y     L  A+ LFD +P R+ ++W  M
Sbjct: 198 GGILNCRMLHALSFKLGLEALNIVATN-LVHMYCVCSSLGNARVLFDEIPERNVVTWNVM 256

Query: 273 IDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLN 332
           ++GY   G V  A  LF  +P +D V+W  +I G VQ E   EA  ++  M   GV P  
Sbjct: 257 LNGYSKSGLVDLARDLFERIPAKDVVSWGTIIDGYVQIERLGEALRMYRSMLRTGVGPNE 316

Query: 333 ATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKC------------ 380
                L  A G T  +  G+Q H ++++T  +    ++  +I  YA C            
Sbjct: 317 VMIVDLISACGRTMAVSEGQQFHGIIVRTGFDCYDFIQATIIHFYAACGEINLAFLQFEL 376

Query: 381 -------------------GVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVF 421
                              G+I+ A  +F  M  RD+ SW+SM+ G+S +   +  L++F
Sbjct: 377 GSKDHVSSWNALISGFVRNGMIEQARQLFDEMPERDVFSWSSMISGYSQNEQPDLALQLF 436

Query: 422 ESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGR 481
             M+  G  PN +T + + SA +  G +  G      +     I        ++I++  +
Sbjct: 437 HEMVAGGVQPNEITMVSVFSAIATLGTLMEGRWAHEYILS-NSIPLNDNLNAALIDMYAK 495

Query: 482 AGKIKEAEEFVLRLPFEPDHRI-----WGALLGACGFC-EGNAEIA 521
            G I  A    L+L +E   R+     W A++  CG    G+A ++
Sbjct: 496 CGSITIA----LQLFYEIQDRVSSVSPWNAII--CGLAMHGHANVS 535



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 113/420 (26%), Positives = 202/420 (48%), Gaps = 17/420 (4%)

Query: 8   KSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEE 67
           ++L +  T+ +  Y     +  A+ LF  +P+RNVV++N ML+G+ ++G +  AR LFE 
Sbjct: 216 EALNIVATNLVHMYCVCSSLGNARVLFDEIPERNVVTWNVMLNGYSKSGLVDLARDLFER 275

Query: 68  MPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLI----RNGELNEA 123
           +P ++VVSW  +I G     R+ EA +++  M    V     M+V LI    R   ++E 
Sbjct: 276 IPAKDVVSWGTIIDGYVQIERLGEALRMYRSMLRTGVGPNEVMIVDLISACGRTMAVSEG 335

Query: 124 RKVFNSMPIKNVISWNAMIAG-----YVECCMMGEAIVLFEEMEERNVVTWTSMISGYCR 178
           ++ F+ + ++        I       Y  C  +  A + FE   + +V +W ++ISG+ R
Sbjct: 336 QQ-FHGIIVRTGFDCYDFIQATIIHFYAACGEINLAFLQFELGSKDHVSSWNALISGFVR 394

Query: 179 AGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSC 238
            G +E+   LF  MP ++V SW++MI G++ N     +L LF EM       N   + S 
Sbjct: 395 NGMIEQARQLFDEMPERDVFSWSSMISGYSQNEQPDLALQLFHEMVAGGVQPNEITMVSV 454

Query: 239 NSMIN--GYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDR- 295
            S I   G +  GR      L +++P+ D ++  ++ID Y   G ++ A  LF+ + DR 
Sbjct: 455 FSAIATLGTLMEGRWAHEYILSNSIPLNDNLN-AALIDMYAKCGSITIALQLFYEIQDRV 513

Query: 296 -DAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQI 354
                W A+I GL  +     +  LF +++   + P + TF  +  A      +D G + 
Sbjct: 514 SSVSPWNAIICGLAMHGHANVSLKLFSQLQRVRIKPNSITFIGVLSACCHAGLVDTGEKY 573

Query: 355 HCVLMKTES-ESDLILENCLISMYAKCGVIDNAYNIFSNM-VSRDLVSWNSMVMGFSHHG 412
              +    + E ++    C+I +  + G +  A  +   M +  D+V W +++     HG
Sbjct: 574 FKGMKNLYNIEPNIKHYGCMIDLLGRAGRLKEAAEMIRKMPMKADVVIWGTLLAACRTHG 633



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 97/390 (24%), Positives = 157/390 (40%), Gaps = 114/390 (29%)

Query: 7   PKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFE 66
           P+  VV     +  YSK G +D A+ LF+ +P ++VVS+  ++ G++Q  RL EA R++ 
Sbjct: 246 PERNVVTWNVMLNGYSKSGLVDLARDLFERIPAKDVVSWGTIIDGYVQIERLGEALRMYR 305

Query: 67  EMPERNVVSWTAMICGLADA-GR---VCEARKL--------------------------- 95
            M    V     MI  L  A GR   V E ++                            
Sbjct: 306 SMLRTGVGPNEVMIVDLISACGRTMAVSEGQQFHGIIVRTGFDCYDFIQATIIHFYAACG 365

Query: 96  --------FEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVE 147
                   FE   + +V SWN+++ G +RNG + +AR++F+ MP ++V SW++MI+GY +
Sbjct: 366 EINLAFLQFELGSKDHVSSWNALISGFVRNGMIEQARQLFDEMPERDVFSWSSMISGYSQ 425

Query: 148 CCMMGEAIVLFEEM----EERNVVTWTSMISGYCRAGEVEEG-----YCLFRRMPRKN-- 196
                 A+ LF EM     + N +T  S+ S     G + EG     Y L   +P  +  
Sbjct: 426 NEQPDLALQLFHEMVAGGVQPNEITMVSVFSAIATLGTLMEGRWAHEYILSNSIPLNDNL 485

Query: 197 ------------------------------VVSWTAMIGGFAWNGFHKESLLLFIEMK-- 224
                                         V  W A+I G A +G    SL LF +++  
Sbjct: 486 NAALIDMYAKCGSITIALQLFYEIQDRVSSVSPWNAIICGLAMHGHANVSLKLFSQLQRV 545

Query: 225 -------------------GICDNGNNC------------NVQSCNSMINGYIRFGRLEE 253
                              G+ D G               N++    MI+   R GRL+E
Sbjct: 546 RIKPNSITFIGVLSACCHAGLVDTGEKYFKGMKNLYNIEPNIKHYGCMIDLLGRAGRLKE 605

Query: 254 AQNLFDTVPVR-DEISWTSMIDGYLSVGQV 282
           A  +   +P++ D + W +++    + G V
Sbjct: 606 AAEMIRKMPMKADVVIWGTLLAACRTHGNV 635



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 39/128 (30%), Positives = 60/128 (46%), Gaps = 31/128 (24%)

Query: 351 GRQIHCVLMKTESESDLILENCLISMYAKC------------------------------ 380
           G+QIH ++ K+   S++ ++N LIS Y KC                              
Sbjct: 71  GQQIHSLVFKSGLLSNIFVKNSLISFYVKCRLISNARSLFDTCSVLDPVSCNIMLAGYVK 130

Query: 381 -GVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGI 439
            G +DNA ++F  M  +  VS+ +MVMG + +    E + VF+ M  +G  PN VT   +
Sbjct: 131 SGSLDNARHLFEKMPIKGCVSYTTMVMGLAQNNCWLEAIGVFKDMRFAGVIPNEVTLASV 190

Query: 440 LSACSHAG 447
           +SA SH G
Sbjct: 191 ISAYSHVG 198


>gi|168068035|ref|XP_001785902.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162662428|gb|EDQ49285.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 908

 Score =  328 bits (842), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 203/631 (32%), Positives = 326/631 (51%), Gaps = 58/631 (9%)

Query: 21  YSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPER-----NVVS 75
           Y+K G ID+A+ +F  M +R++ S+  M+ G  Q+GR  EA  LF +M ER     N+ +
Sbjct: 176 YAKSGSIDDARVVFDGMVERDIFSWTVMIGGLAQHGRGQEAFSLFLQM-ERGGCLPNLTT 234

Query: 76  WTAMI--CGLADAGRVCEARKLFEEMPERNVVS----WNSMVVGLIRNGELNEARKVFNS 129
           + +++    +   G +   +++ +   +   +S     N+++    + G +++AR VF+ 
Sbjct: 235 YLSILNASAITSTGALEWVKEVHKHAGKAGFISDLRVGNALIHMYAKCGSIDDARLVFDG 294

Query: 130 MPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVV----TWTSMISG---------- 175
           M  ++VISWNAMI G  +     EA  +F +M++   V    T+ S+++           
Sbjct: 295 MCDRDVISWNAMIGGLAQNGCGHEAFTIFLKMQQEGFVPDSTTYLSLLNTHVSTGAWEWV 354

Query: 176 -------------------------YCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWN 210
                                    Y R G +++   +F ++  +NV +W AMIGG A  
Sbjct: 355 KEVHKHAVEVGLVSDLRVGSAFVHMYIRCGSIDDAQLIFDKLAVRNVTTWNAMIGGVAQQ 414

Query: 211 GFHKESLLLFIEMKG---ICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEI 267
              +E+L LF++M+      D     N+ S N    G      ++E  +      + D  
Sbjct: 415 KCGREALSLFLQMRREGFFPDATTFVNILSANV---GEEALEWVKEVHSYAIDAGLVDLR 471

Query: 268 SWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHG 327
              +++  Y   G    A  +F +M +R+   WT MISGL Q+    EA  LF++M   G
Sbjct: 472 VGNALVHMYAKCGNTMYAKQVFDDMVERNVTTWTVMISGLAQHGCGHEAFSLFLQMLREG 531

Query: 328 VPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAY 387
           + P   T+  +  A  +T  ++  +++H   +     SDL + N L+ MYAKCG +D+A 
Sbjct: 532 IVPDATTYVSILSACASTGALEWVKEVHSHAVNAGLVSDLRVGNALVHMYAKCGSVDDAR 591

Query: 388 NIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAG 447
            +F +M+ RD+ SW  M+ G + HG   + L +F  M   G  PN  +F+ +LSACSHAG
Sbjct: 592 RVFDDMLERDVYSWTVMIGGLAQHGRGLDALDLFVKMKLEGFKPNGYSFVAVLSACSHAG 651

Query: 448 LVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGAL 507
           LV  G   F ++   Y I+P  EHY  M++LLGRAG+++EA+ F+L +P EP    WGAL
Sbjct: 652 LVDEGRRQFLSLTQDYGIEPTMEHYTCMVDLLGRAGQLEEAKHFILNMPIEPGDAPWGAL 711

Query: 508 LGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGV 567
           LGAC    GN E+AE AAK  L+L P +A  +V+L NIYAA+G   ++  +R  M  +G+
Sbjct: 712 LGAC-VTYGNLEMAEFAAKERLKLKPKSASTYVLLSNIYAATGNWEQKLLVRSMMQRRGI 770

Query: 568 RKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
           RK PG SW+  +  I  F+ GD    +  EI
Sbjct: 771 RKEPGRSWIEVDNQIHSFVVGDTSHPESKEI 801



 Score =  191 bits (484), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 138/552 (25%), Positives = 248/552 (44%), Gaps = 65/552 (11%)

Query: 15  TSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVV 74
           T+ +  Y K G ID+A+ +F  M +RNV+S+  M+ G    GR  EA   F +M     +
Sbjct: 69  TALVNMYVKCGSIDDAQLIFDKMVERNVISWTVMIGGLAHYGRGQEAFHRFLQMQREGFI 128

Query: 75  SWTAMICGLADAGRVCEARKLFEEMPERNVVS--------WNSMVVGLIRNGELNEARKV 126
             +     + +A     A +  +E+    V +         N++V    ++G +++AR V
Sbjct: 129 PNSYTYVSILNANASAGALEWVKEVHSHAVNAGLALDLRVGNALVHMYAKSGSIDDARVV 188

Query: 127 FNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEE----RNVVTWTSMISG------- 175
           F+ M  +++ SW  MI G  +     EA  LF +ME      N+ T+ S+++        
Sbjct: 189 FDGMVERDIFSWTVMIGGLAQHGRGQEAFSLFLQMERGGCLPNLTTYLSILNASAITSTG 248

Query: 176 ------------------------------YCRAGEVEEGYCLFRRMPRKNVVSWTAMIG 205
                                         Y + G +++   +F  M  ++V+SW AMIG
Sbjct: 249 ALEWVKEVHKHAGKAGFISDLRVGNALIHMYAKCGSIDDARLVFDGMCDRDVISWNAMIG 308

Query: 206 GFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNL----FDTV 261
           G A NG   E+  +F++M+     G   +  +  S++N ++  G  E  + +     +  
Sbjct: 309 GLAQNGCGHEAFTIFLKMQ---QEGFVPDSTTYLSLLNTHVSTGAWEWVKEVHKHAVEVG 365

Query: 262 PVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFM 321
            V D    ++ +  Y+  G + +A  +F  +  R+   W AMI G+ Q +   EA  LF+
Sbjct: 366 LVSDLRVGSAFVHMYIRCGSIDDAQLIFDKLAVRNVTTWNAMIGGVAQQKCGREALSLFL 425

Query: 322 EMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCG 381
           +MR  G  P   TF  +  A      ++  +++H   +      DL + N L+ MYAKCG
Sbjct: 426 QMRREGFFPDATTFVNILSANVGEEALEWVKEVHSYAIDA-GLVDLRVGNALVHMYAKCG 484

Query: 382 VIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILS 441
               A  +F +MV R++ +W  M+ G + HG  +E   +F  ML  G  P++ T++ ILS
Sbjct: 485 NTMYAKQVFDDMVERNVTTWTVMISGLAQHGCGHEAFSLFLQMLREGIVPDATTYVSILS 544

Query: 442 ACSHAGLVSRGWELFNAMFD---VYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFE 498
           AC+  G +    E+ +   +   V  ++ G     +++++  + G + +A   V     E
Sbjct: 545 ACASTGALEWVKEVHSHAVNAGLVSDLRVGN----ALVHMYAKCGSVDDARR-VFDDMLE 599

Query: 499 PDHRIWGALLGA 510
            D   W  ++G 
Sbjct: 600 RDVYSWTVMIGG 611



 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 89/326 (27%), Positives = 161/326 (49%), Gaps = 35/326 (10%)

Query: 203 MIGGFAWNGFHKESLLLFIEMKGICDNGNNCN----VQSCNSMINGYIRFGRLEEA---Q 255
           MIGG+A  G+ ++++ ++ +M+      N       +++C S ++  +++G+   A   Q
Sbjct: 1   MIGGYAEYGYAEDAMKVYSQMRREGGQPNEITYLSILKACCSPVS--LKWGKKIHAHIIQ 58

Query: 256 NLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVE 315
           + F +  VR E   T++++ Y+  G + +A  +F  M +R+ ++WT MI GL       E
Sbjct: 59  SGFQS-DVRVE---TALVNMYVKCGSIDDAQLIFDKMVERNVISWTVMIGGLAHYGRGQE 114

Query: 316 ATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLIS 375
           A + F++M+  G  P + T+  +  A  +   ++  +++H   +      DL + N L+ 
Sbjct: 115 AFHRFLQMQREGFIPNSYTYVSILNANASAGALEWVKEVHSHAVNAGLALDLRVGNALVH 174

Query: 376 MYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVT 435
           MYAK G ID+A  +F  MV RD+ SW  M+ G + HG   E   +F  M   G  PN  T
Sbjct: 175 MYAKSGSIDDARVVFDGMVERDIFSWTVMIGGLAQHGRGQEAFSLFLQMERGGCLPNLTT 234

Query: 436 FLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVS-------MINLLGRAGKIKEA 488
           +L IL+A +     +  W     + +V+K   G   ++S       +I++  + G I +A
Sbjct: 235 YLSILNASAITSTGALEW-----VKEVHK-HAGKAGFISDLRVGNALIHMYAKCGSIDDA 288

Query: 489 EEFVLRLPF----EPDHRIWGALLGA 510
                RL F    + D   W A++G 
Sbjct: 289 -----RLVFDGMCDRDVISWNAMIGG 309


>gi|328774753|gb|AEB39776.1| pentatricopeptide repeat protein 78 [Funaria hygrometrica]
          Length = 1020

 Score =  328 bits (842), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 197/622 (31%), Positives = 320/622 (51%), Gaps = 57/622 (9%)

Query: 21  YSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVV------ 74
           Y+K G I EA+ +F  M  ++VVS+  ++ G+   G    A  +F++M +  VV      
Sbjct: 289 YAKCGSIHEAREVFDKMETKSVVSWTIIIGGYADCGHSEIAFEIFQKMQQEGVVPNRITY 348

Query: 75  -------------SW--------------------TAMICGLADAGRVCEARKLFEEMPE 101
                         W                    TA++   A  G   + R++FE++  
Sbjct: 349 INVLNAFSGPAALKWGKTVHSHILNAGHESDLAVGTALVKMYAKCGSYKDCRQVFEKLVN 408

Query: 102 RNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEM 161
           R++++WN+M+ GL   G   EA ++++ M  + ++         +  C+   A+    E+
Sbjct: 409 RDLIAWNTMIGGLAEGGNWEEASEIYHQMQREGMMPNKITYVILLNACVNPTALHWGREI 468

Query: 162 EER--------NVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFH 213
             R        ++    ++IS Y R G +++   LF +M RK+++SWTAMIGG A +G  
Sbjct: 469 HSRVVKDGFMFDISVQNALISMYARCGSIKDARLLFNKMVRKDIISWTAMIGGLAKSGLG 528

Query: 214 KESLLLFIEMKGICDNGNNCNVQSCNSMING-----YIRFGRLEEAQNLFDTVPVRDEIS 268
            E+L +F +M+     G   N  +  S++N       + +GR    Q + +     D   
Sbjct: 529 AEALAVFQDMQ---QAGLKPNRVTYTSILNACSSPAALDWGR-RIHQQVIEAGLATDAHV 584

Query: 269 WTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGV 328
             ++++ Y   G V +A  +F  M  RD VA+ AMI G   + L  EA  LF  ++  G+
Sbjct: 585 ANTLVNMYSMCGSVKDARQVFDRMTQRDIVAYNAMIGGYAAHNLGKEALKLFDRLQEEGL 644

Query: 329 PPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYN 388
            P   T+  +  A   + +++  ++IH +++K    SD  L N L+S YAKCG   +A  
Sbjct: 645 KPDKVTYINMLNACANSGSLEWAKEIHSLVLKDGYLSDTSLGNALVSTYAKCGSFSDALL 704

Query: 389 IFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGL 448
           +F  M+ R+++SWN+++ G + HG   + L++FE M   G  P+ VTF+ +LSACSHAGL
Sbjct: 705 VFDKMMKRNVISWNAIIGGCAQHGRGQDVLQLFERMKMEGIKPDIVTFVSLLSACSHAGL 764

Query: 449 VSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALL 508
           +  G   F +M   + I P  EHY  M++LLGRAG++ E E  +  +PF+ + RIWGALL
Sbjct: 765 LEEGRRYFCSMSRDFGITPTIEHYGCMVDLLGRAGQLDEVEALIKTMPFQANTRIWGALL 824

Query: 509 GACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVR 568
           GAC    GN  +AE AA+  L+LDP NA  +V L ++YAA+G      KLR  M  +GV 
Sbjct: 825 GACRI-HGNVPVAERAAESSLKLDPDNAAVYVALSHMYAAAGMWDSAAKLRKLMEQRGVT 883

Query: 569 KVPGCSWLMRNGGIQMFLSGDK 590
           K PG SW+     +  F++ D+
Sbjct: 884 KEPGRSWIEVGDKLHYFVAEDR 905



 Score =  188 bits (478), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 134/505 (26%), Positives = 246/505 (48%), Gaps = 29/505 (5%)

Query: 28  DEAKALFQLMPQR----NVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVV----SWTAM 79
           D A  + Q + Q+    N   Y  ML   ++   L   R + E + +   V    +  A+
Sbjct: 123 DRAMDVVQYLQQQGARVNSCDYMKMLKRCIEVKDLVAGREVHEHIIQHCTVLDQYTVNAL 182

Query: 80  ICGLADAGRVCEARKLFEEM--PERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVIS 137
           I      G + EAR+++ ++   ER V SWN+MVVG ++ G + EA K+   M    +  
Sbjct: 183 INMYIQCGSIEEARQVWNKLNHTERTVHSWNAMVVGYVQYGYIEEALKLLREMQQHGLAL 242

Query: 138 WNAMIAGYVECCMMGEAI-----VLFEEMEER---NVVTWTSMISGYCRAGEVEEGYCLF 189
             A     +  C    A+     +  E M+ R   +V     +++ Y + G + E   +F
Sbjct: 243 GRATTMRLLSSCKSPSALECGREIHVEAMKARLLFDVNVANCILNMYAKCGSIHEAREVF 302

Query: 190 RRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGY---- 245
            +M  K+VVSWT +IGG+A  G  + +  +F +M+     G   N  +  +++N +    
Sbjct: 303 DKMETKSVVSWTIIIGGYADCGHSEIAFEIFQKMQ---QEGVVPNRITYINVLNAFSGPA 359

Query: 246 -IRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMI 304
            +++G+   + ++ +     D    T+++  Y   G   +   +F  + +RD +AW  MI
Sbjct: 360 ALKWGKTVHS-HILNAGHESDLAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMI 418

Query: 305 SGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESE 364
            GL +   + EA+ ++ +M+  G+ P   T+ +L  A      +  GR+IH  ++K    
Sbjct: 419 GGLAEGGNWEEASEIYHQMQREGMMPNKITYVILLNACVNPTALHWGREIHSRVVKDGFM 478

Query: 365 SDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESM 424
            D+ ++N LISMYA+CG I +A  +F+ MV +D++SW +M+ G +  GL  E L VF+ M
Sbjct: 479 FDISVQNALISMYARCGSIKDARLLFNKMVRKDIISWTAMIGGLAKSGLGAEALAVFQDM 538

Query: 425 LESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGK 484
            ++G  PN VT+  IL+ACS    +  G  +   + +   +        +++N+    G 
Sbjct: 539 QQAGLKPNRVTYTSILNACSSPAALDWGRRIHQQVIEA-GLATDAHVANTLVNMYSMCGS 597

Query: 485 IKEAEEFVLRLPFEPDHRIWGALLG 509
           +K+A +   R+  + D   + A++G
Sbjct: 598 VKDARQVFDRMT-QRDIVAYNAMIG 621



 Score =  112 bits (279), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 70/271 (25%), Positives = 133/271 (49%), Gaps = 14/271 (5%)

Query: 252 EEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFH--NMPDRDAVAWTAMISGLVQ 309
           E  +++     V D+ +  ++I+ Y+  G +  A  +++  N  +R   +W AM+ G VQ
Sbjct: 162 EVHEHIIQHCTVLDQYTVNALINMYIQCGSIEEARQVWNKLNHTERTVHSWNAMVVGYVQ 221

Query: 310 NELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLIL 369
                EA  L  EM+ HG+    AT   L  +  + + ++ GR+IH   MK     D+ +
Sbjct: 222 YGYIEEALKLLREMQQHGLALGRATTMRLLSSCKSPSALECGREIHVEAMKARLLFDVNV 281

Query: 370 ENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGT 429
            NC+++MYAKCG I  A  +F  M ++ +VSW  ++ G++  G +    ++F+ M + G 
Sbjct: 282 ANCILNMYAKCGSIHEAREVFDKMETKSVVSWTIIIGGYADCGHSEIAFEIFQKMQQEGV 341

Query: 430 HPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYV----SMINLLGRAGKI 485
            PN +T++ +L+A S    +  G  + + + +      G E  +    +++ +  + G  
Sbjct: 342 VPNRITYINVLNAFSGPAALKWGKTVHSHILN-----AGHESDLAVGTALVKMYAKCGSY 396

Query: 486 KEAEEFVLRLPFEPDHRIWGALLGACGFCEG 516
           K+  +   +L    D   W  ++G  G  EG
Sbjct: 397 KDCRQVFEKL-VNRDLIAWNTMIG--GLAEG 424


>gi|296088715|emb|CBI38165.3| unnamed protein product [Vitis vinifera]
          Length = 654

 Score =  328 bits (840), Expect = 7e-87,   Method: Compositional matrix adjust.
 Identities = 199/585 (34%), Positives = 310/585 (52%), Gaps = 40/585 (6%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWT 77
           I  Y K   +D+A+ LF  MPQRN  ++N+++S   ++G L EA RLF  MPE +  SW 
Sbjct: 57  IDVYGKCDCLDDARKLFDRMPQRNTFTWNSLISVLTKSGFLDEAARLFGSMPEPDQCSWN 116

Query: 78  AMICGLADAGRVCEARKLFEEMPER----NVVSWNSMVVGLIRNGELNEARKVF----NS 129
           +M+ G A   R  E+ + F +M       N  S+ S +       +LN   +V      S
Sbjct: 117 SMVSGFAQHDRFEESLEYFVKMHREDFLLNEYSFGSALSACAGLMDLNMGTQVHALVSKS 176

Query: 130 MPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLF 189
               +V   +A+I  Y +C  +  A  +F  M ERN+VTW S+I+ Y + G   E   +F
Sbjct: 177 RYSTDVYMGSALIDMYSKCGSVACAEEVFSGMIERNLVTWNSLITCYEQNGPASEALEVF 236

Query: 190 RRMPRKNV----VSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGY 245
            RM    +    V+  +++   A     KE L   I  + +  N    ++   N++++ Y
Sbjct: 237 VRMMDSGLEPDEVTLASVVSACASLCALKEGLQ--IHARVVKTNKFRDDLVLGNALVDMY 294

Query: 246 IRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMIS 305
            +  ++ EA+ +FD + +R+ +S TSM+ GY     V  A ++F  M  R+ V+W A+I+
Sbjct: 295 AKCSKVNEARRVFDRMSIRNVVSETSMVSGYARAASVKAARFMFSKMTQRNVVSWNALIA 354

Query: 306 GLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESES 365
           G  QN    EA  LF  ++   + P + TF  L                         +S
Sbjct: 355 GYTQNGENEEALRLFRLLKRESIWPTHYTFGNLL------------------------KS 390

Query: 366 DLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESML 425
           D+ + N LI MY KCG I++   +F  M  RD VSWN++++G++ +G   E L++F  ML
Sbjct: 391 DIFVGNSLIDMYMKCGSIEDGSRVFEKMKERDCVSWNAIIVGYAQNGYGAEALQIFRKML 450

Query: 426 ESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKI 485
             G  P+ VT +G+L ACSHAGLV  G   F +M + + + P  +HY  M++LLGRAG +
Sbjct: 451 VCGEKPDHVTMIGVLCACSHAGLVEEGRHYFFSM-EEHGLIPLKDHYTCMVDLLGRAGCL 509

Query: 486 KEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNI 545
            EA+  +  +P  PD  +WG+LL AC    GN E+ +HAA++LLE+DP N+  +V+L N+
Sbjct: 510 NEAKNLIEAMPVNPDAVVWGSLLAACKV-HGNIEMGKHAAEKLLEIDPWNSGPYVLLSNM 568

Query: 546 YAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDK 590
           YA  GR  +  ++R  M  +GV K PGCSW+     + +FL  DK
Sbjct: 569 YAELGRWGDVVRVRKLMRQQGVTKQPGCSWIEVESRVHVFLVKDK 613



 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 129/512 (25%), Positives = 211/512 (41%), Gaps = 127/512 (24%)

Query: 7   PKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFE 66
           P+       S I+  +K GF+DEA  LF  MP+ +  S+N+M+SGF Q+ R  E+   F 
Sbjct: 77  PQRNTFTWNSLISVLTKSGFLDEAARLFGSMPEPDQCSWNSMVSGFAQHDRFEESLEYFV 136

Query: 67  EMPER---------------------------------------NVVSWTAMICGLADAG 87
           +M                                          +V   +A+I   +  G
Sbjct: 137 KMHREDFLLNEYSFGSALSACAGLMDLNMGTQVHALVSKSRYSTDVYMGSALIDMYSKCG 196

Query: 88  RVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVF----------NSMPIKNVIS 137
            V  A ++F  M ERN+V+WNS++    +NG  +EA +VF          + + + +V+S
Sbjct: 197 SVACAEEVFSGMIERNLVTWNSLITCYEQNGPASEALEVFVRMMDSGLEPDEVTLASVVS 256

Query: 138 W------------------------------NAMIAGYVECCMMGEAIVLFEEMEERNVV 167
                                          NA++  Y +C  + EA  +F+ M  RNVV
Sbjct: 257 ACASLCALKEGLQIHARVVKTNKFRDDLVLGNALVDMYAKCSKVNEARRVFDRMSIRNVV 316

Query: 168 TWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKG-- 225
           + TSM+SGY RA  V+    +F +M ++NVVSW A+I G+  NG ++E+L LF  +K   
Sbjct: 317 SETSMVSGYARAASVKAARFMFSKMTQRNVVSWNALIAGYTQNGENEEALRLFRLLKRES 376

Query: 226 ------ICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSV 279
                    N    ++   NS+I+ Y++ G +E+   +F+ +  RD +SW ++I GY   
Sbjct: 377 IWPTHYTFGNLLKSDIFVGNSLIDMYMKCGSIEDGSRVFEKMKERDCVSWNAIIVGYAQN 436

Query: 280 GQVSNAYYLFHNM----PDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATF 335
           G  + A  +F  M       D V    ++       L  E  + F  M  HG+ PL   +
Sbjct: 437 GYGAEALQIFRKMLVCGEKPDHVTMIGVLCACSHAGLVEEGRHYFFSMEEHGLIPLKDHY 496

Query: 336 SVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNM-V 394
           +                                   C++ +  + G ++ A N+   M V
Sbjct: 497 T-----------------------------------CMVDLLGRAGCLNEAKNLIEAMPV 521

Query: 395 SRDLVSWNSMVMGFSHHGLANETLKVFESMLE 426
           + D V W S++     HG         E +LE
Sbjct: 522 NPDAVVWGSLLAACKVHGNIEMGKHAAEKLLE 553



 Score =  151 bits (382), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 74/257 (28%), Positives = 139/257 (54%)

Query: 239 NSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAV 298
           N +I+ Y +   L++A+ LFD +P R+  +W S+I      G +  A  LF +MP+ D  
Sbjct: 54  NRLIDVYGKCDCLDDARKLFDRMPQRNTFTWNSLISVLTKSGFLDEAARLFGSMPEPDQC 113

Query: 299 AWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVL 358
           +W +M+SG  Q++ F E+   F++M          +F     A     ++++G Q+H ++
Sbjct: 114 SWNSMVSGFAQHDRFEESLEYFVKMHREDFLLNEYSFGSALSACAGLMDLNMGTQVHALV 173

Query: 359 MKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETL 418
            K+   +D+ + + LI MY+KCG +  A  +FS M+ R+LV+WNS++  +  +G A+E L
Sbjct: 174 SKSRYSTDVYMGSALIDMYSKCGSVACAEEVFSGMIERNLVTWNSLITCYEQNGPASEAL 233

Query: 419 KVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINL 478
           +VF  M++SG  P+ VT   ++SAC+    +  G ++   +    K +       +++++
Sbjct: 234 EVFVRMMDSGLEPDEVTLASVVSACASLCALKEGLQIHARVVKTNKFRDDLVLGNALVDM 293

Query: 479 LGRAGKIKEAEEFVLRL 495
             +  K+ EA     R+
Sbjct: 294 YAKCSKVNEARRVFDRM 310



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 67/235 (28%), Positives = 113/235 (48%), Gaps = 29/235 (12%)

Query: 1   MSERNHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSE 60
           MS RN     VV  TS ++ Y++   +  A+ +F  M QRNVVS+NA+++G+ QNG   E
Sbjct: 310 MSIRN-----VVSETSMVSGYARAASVKAARFMFSKMTQRNVVSWNALIAGYTQNGENEE 364

Query: 61  ARRLFE---------------EMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVV 105
           A RLF                 + + ++    ++I      G + +  ++FE+M ER+ V
Sbjct: 365 ALRLFRLLKRESIWPTHYTFGNLLKSDIFVGNSLIDMYMKCGSIEDGSRVFEKMKERDCV 424

Query: 106 SWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECC----MMGEAIVLFEEM 161
           SWN+++VG  +NG   EA ++F  M +      +  + G +  C    ++ E    F  M
Sbjct: 425 SWNAIIVGYAQNGYGAEALQIFRKMLVCGEKPDHVTMIGVLCACSHAGLVEEGRHYFFSM 484

Query: 162 EERNVVT----WTSMISGYCRAGEVEEGYCLFRRMP-RKNVVSWTAMIGGFAWNG 211
           EE  ++     +T M+    RAG + E   L   MP   + V W +++     +G
Sbjct: 485 EEHGLIPLKDHYTCMVDLLGRAGCLNEAKNLIEAMPVNPDAVVWGSLLAACKVHG 539



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 58/250 (23%), Positives = 102/250 (40%), Gaps = 36/250 (14%)

Query: 330 PLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNI 389
           P ++ F+ L  +   + +    R +H  ++ T+   ++ ++N LI +Y KC  +D+A  +
Sbjct: 13  PNSSPFAKLLDSCLRSRSARGTRLVHARILMTQFSMEIFIQNRLIDVYGKCDCLDDARKL 72

Query: 390 FSNMVSR-------------------------------DLVSWNSMVMGFSHHGLANETL 418
           F  M  R                               D  SWNSMV GF+ H    E+L
Sbjct: 73  FDRMPQRNTFTWNSLISVLTKSGFLDEAARLFGSMPEPDQCSWNSMVSGFAQHDRFEESL 132

Query: 419 KVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINL 478
           + F  M       N  +F   LSAC+    ++ G ++ +A+    +         ++I++
Sbjct: 133 EYFVKMHREDFLLNEYSFGSALSACAGLMDLNMGTQV-HALVSKSRYSTDVYMGSALIDM 191

Query: 479 LGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPA 538
             + G +  AEE V     E +   W +L+  C    G A  A     R+  +D    P 
Sbjct: 192 YSKCGSVACAEE-VFSGMIERNLVTWNSLI-TCYEQNGPASEALEVFVRM--MDSGLEPD 247

Query: 539 HVVLCNIYAA 548
            V L ++ +A
Sbjct: 248 EVTLASVVSA 257


>gi|225457769|ref|XP_002278218.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09040,
            mitochondrial [Vitis vinifera]
 gi|302142763|emb|CBI19966.3| unnamed protein product [Vitis vinifera]
          Length = 1048

 Score =  327 bits (839), Expect = 9e-87,   Method: Compositional matrix adjust.
 Identities = 209/638 (32%), Positives = 334/638 (52%), Gaps = 59/638 (9%)

Query: 15   TSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMP----- 69
            +S I  Y+K   ++ AK +F  + +RN+V +NAML G+ QNG  S+  +LF EM      
Sbjct: 388  SSLINMYAKCEKMEAAKKVFDALDERNLVLWNAMLGGYAQNGYASKVMKLFSEMRGCGFW 447

Query: 70   ----------------------------------ERNVVSWTAMICGLADAGRVCEARKL 95
                                              E N+     ++   A  G + EAR+ 
Sbjct: 448  PDEFTYTSILSACACLECLEMGRQLHSFIIKHNFEYNLFVENTLVDMYAKCGALEEARQQ 507

Query: 96   FEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAI 155
            FE +  R+ VSWN+++VG ++  + +EA  +F  M +  +      +A  +  C   +A+
Sbjct: 508  FEFIRNRDNVSWNAIIVGYVQEEDEDEAFNMFRRMILDGIAPDEVSLASILSGCANLQAL 567

Query: 156  VLFEEME--------ERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGF 207
               E++         +  +   +S+I  Y + G +E    +F  MP ++VVS  A+I G+
Sbjct: 568  EQGEQVHCFLVKSGLQTCLYAGSSLIDMYVKCGAIEAARYVFSCMPSRSVVSMNAIIAGY 627

Query: 208  AWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRD-- 265
            A N    E++ LF EM+   + G N +  +  S+++      +L   + +   +  R   
Sbjct: 628  AQNDL-VEAIDLFQEMQ---NEGLNPSEITFASLLDACTGPYKLNLGRQIHCLIQKRGLL 683

Query: 266  ---EISWTSMIDGYLSVGQVSNAYYLFHNMP-DRDAVAWTAMISGLVQNELFVEATYLFM 321
               +    S++  Y++  + ++A  LF      +  + WTA+ISG  QN    EA  L+ 
Sbjct: 684  YDGDFLGVSLLVMYMNSQRKTDADILFSEFQYPKSTILWTAIISGHTQNGCSEEALQLYQ 743

Query: 322  EMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCG 381
            EM  +   P  ATF+ +  A    A++  GR IH ++     +SD +  + ++ MYAKCG
Sbjct: 744  EMHRNNARPDQATFASVLRACSILASLGDGRMIHSLIFHVGLDSDELTGSAVVDMYAKCG 803

Query: 382  VIDNAYNIFSNMVSR-DLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGIL 440
             + ++  +F  M S+ D++SWNSM++GF+ +G A   LK+F+ M  +   P+ VTFLG+L
Sbjct: 804  DMKSSVQVFEEMGSKNDVISWNSMIVGFAKNGYAENALKIFDEMKHTRIRPDDVTFLGVL 863

Query: 441  SACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPD 500
            +ACSHAG VS G E+F+ M   YKI P  +H   MI+LLGR G +KEAEEF+ +L FEP+
Sbjct: 864  TACSHAGRVSEGREIFDIMVHSYKIVPRLDHCACMIDLLGRWGFLKEAEEFIDKLNFEPN 923

Query: 501  HRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRM 560
              IW  LLGAC    G+      AA++L+EL+P N+  +V+L NIYAASG   E + +R 
Sbjct: 924  AMIWATLLGACRI-HGDDIRGRRAAEKLIELEPENSSPYVLLSNIYAASGNWDEVNSVRR 982

Query: 561  DMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
             M  KG+RK+PGCSW++      +F++GDK      EI
Sbjct: 983  AMREKGLRKLPGCSWIVVGQKTNLFVAGDKFHPSAGEI 1020



 Score =  185 bits (470), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 148/596 (24%), Positives = 268/596 (44%), Gaps = 79/596 (13%)

Query: 16  SSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNV-- 73
           S I  YSK G + +A+ +F  +   + VS+ AM++G++Q G   EA ++FE+M +  +  
Sbjct: 222 SLIDMYSKCGSLVDARKIFDAVVDPDTVSWTAMIAGYVQVGLPEEALKVFEDMQKLGLVP 281

Query: 74  --VSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMP 131
             V++  +I      GR+ +A  LF +MP  NVV+WN M+ G ++ G   EA   F +M 
Sbjct: 282 DQVAFVTVITACVGLGRLDDACDLFVQMPNTNVVAWNVMISGHVKRGCDIEAIDFFKNMW 341

Query: 132 IKNVISWNAMIAGYVECCMMGEA-----IVLFEEMEE---RNVVTWTSMISGYCRAGEVE 183
              V S  + +   +      EA     +V  + +++    NV   +S+I+ Y +  ++E
Sbjct: 342 KTGVKSTRSTLGSVLSAIASLEALNYGLLVHAQAIKQGLNSNVYVGSSLINMYAKCEKME 401

Query: 184 EGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKG------------------ 225
               +F  +  +N+V W AM+GG+A NG+  + + LF EM+G                  
Sbjct: 402 AAKKVFDALDERNLVLWNAMLGGYAQNGYASKVMKLFSEMRGCGFWPDEFTYTSILSACA 461

Query: 226 --------------ICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTS 271
                         I  +    N+   N++++ Y + G LEEA+  F+ +  RD +SW +
Sbjct: 462 CLECLEMGRQLHSFIIKHNFEYNLFVENTLVDMYAKCGALEEARQQFEFIRNRDNVSWNA 521

Query: 272 MIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPL 331
           +I GY                               VQ E   EA  +F  M   G+ P 
Sbjct: 522 IIVGY-------------------------------VQEEDEDEAFNMFRRMILDGIAPD 550

Query: 332 NATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFS 391
             + + +         ++ G Q+HC L+K+  ++ L   + LI MY KCG I+ A  +FS
Sbjct: 551 EVSLASILSGCANLQALEQGEQVHCFLVKSGLQTCLYAGSSLIDMYVKCGAIEAARYVFS 610

Query: 392 NMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSR 451
            M SR +VS N+++ G++ + L  E + +F+ M   G +P+ +TF  +L AC+    ++ 
Sbjct: 611 CMPSRSVVSMNAIIAGYAQNDLV-EAIDLFQEMQNEGLNPSEITFASLLDACTGPYKLNL 669

Query: 452 GWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGA- 510
           G ++   +     +  G    VS++ +   + +  +A+       +     +W A++   
Sbjct: 670 GRQIHCLIQKRGLLYDGDFLGVSLLVMYMNSQRKTDADILFSEFQYPKSTILWTAIISGH 729

Query: 511 --CGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGL 564
              G  E   ++ +   +     D     + +  C+I A+ G     H L   +GL
Sbjct: 730 TQNGCSEEALQLYQEMHRNNARPDQATFASVLRACSILASLGDGRMIHSLIFHVGL 785



 Score =  182 bits (462), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 132/493 (26%), Positives = 238/493 (48%), Gaps = 22/493 (4%)

Query: 21  YSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMP----ERNVVSW 76
           Y+K G ++ A   F  + +R+++++N++LS + + G L +    F  +       N  ++
Sbjct: 126 YAKCGNVEFAAKAFNQLEKRDILAWNSVLSMYSRQGSLEQVIWCFGSLQNCGVSPNQFTY 185

Query: 77  TAMICGLA-----DAGRV--CEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNS 129
             ++   A     D G+   C   K+  E    N     S++    + G L +ARK+F++
Sbjct: 186 AIVLSSCARLVDIDLGKQVHCGVIKMGFEF---NSFCEGSLIDMYSKCGSLVDARKIFDA 242

Query: 130 MPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVV----TWTSMISGYCRAGEVEEG 185
           +   + +SW AMIAGYV+  +  EA+ +FE+M++  +V     + ++I+     G +++ 
Sbjct: 243 VVDPDTVSWTAMIAGYVQVGLPEEALKVFEDMQKLGLVPDQVAFVTVITACVGLGRLDDA 302

Query: 186 YCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGY 245
             LF +MP  NVV+W  MI G    G   E++  F  M           + S  S I   
Sbjct: 303 CDLFVQMPNTNVVAWNVMISGHVKRGCDIEAIDFFKNMWKTGVKSTRSTLGSVLSAIASL 362

Query: 246 --IRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAM 303
             + +G L  AQ +   +     +  +S+I+ Y    ++  A  +F  + +R+ V W AM
Sbjct: 363 EALNYGLLVHAQAIKQGLNSNVYVG-SSLINMYAKCEKMEAAKKVFDALDERNLVLWNAM 421

Query: 304 ISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTES 363
           + G  QN    +   LF EMR  G  P   T++ +  A      +++GRQ+H  ++K   
Sbjct: 422 LGGYAQNGYASKVMKLFSEMRGCGFWPDEFTYTSILSACACLECLEMGRQLHSFIIKHNF 481

Query: 364 ESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFES 423
           E +L +EN L+ MYAKCG ++ A   F  + +RD VSWN++++G+      +E   +F  
Sbjct: 482 EYNLFVENTLVDMYAKCGALEEARQQFEFIRNRDNVSWNAIIVGYVQEEDEDEAFNMFRR 541

Query: 424 MLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAG 483
           M+  G  P+ V+   ILS C++   + +G E  +       +Q       S+I++  + G
Sbjct: 542 MILDGIAPDEVSLASILSGCANLQALEQG-EQVHCFLVKSGLQTCLYAGSSLIDMYVKCG 600

Query: 484 KIKEAEEFVLRLP 496
            I+ A      +P
Sbjct: 601 AIEAARYVFSCMP 613



 Score =  164 bits (416), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 156/618 (25%), Positives = 274/618 (44%), Gaps = 69/618 (11%)

Query: 12  VHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPE- 70
           V   + IT     G +D+A  LF  MP  NVV++N M+SG ++ G   EA   F+ M + 
Sbjct: 284 VAFVTVITACVGLGRLDDACDLFVQMPNTNVVAWNVMISGHVKRGCDIEAIDFFKNMWKT 343

Query: 71  --------------------------------------RNVVSWTAMICGLADAGRVCEA 92
                                                  NV   +++I   A   ++  A
Sbjct: 344 GVKSTRSTLGSVLSAIASLEALNYGLLVHAQAIKQGLNSNVYVGSSLINMYAKCEKMEAA 403

Query: 93  RKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSM------PIKNVISWNAMIAGYV 146
           +K+F+ + ERN+V WN+M+ G  +NG  ++  K+F+ M      P +   +        +
Sbjct: 404 KKVFDALDERNLVLWNAMLGGYAQNGYASKVMKLFSEMRGCGFWPDEFTYTSILSACACL 463

Query: 147 ECCMMGEAI--VLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMI 204
           EC  MG  +   + +   E N+    +++  Y + G +EE    F  +  ++ VSW A+I
Sbjct: 464 ECLEMGRQLHSFIIKHNFEYNLFVENTLVDMYAKCGALEEARQQFEFIRNRDNVSWNAII 523

Query: 205 GGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVR 264
            G+       E+  +F  M  I D G   +  S  S+++G      LE+ + +     V+
Sbjct: 524 VGYVQEEDEDEAFNMFRRM--ILD-GIAPDEVSLASILSGCANLQALEQGEQVH-CFLVK 579

Query: 265 DEI-----SWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYL 319
             +     + +S+ID Y+  G +  A Y+F  MP R  V+  A+I+G  QN+L VEA  L
Sbjct: 580 SGLQTCLYAGSSLIDMYVKCGAIEAARYVFSCMPSRSVVSMNAIIAGYAQNDL-VEAIDL 638

Query: 320 FMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESD-LILENCLISMYA 378
           F EM+  G+ P   TF+ L  A      ++LGRQIHC++ K     D   L   L+ MY 
Sbjct: 639 FQEMQNEGLNPSEITFASLLDACTGPYKLNLGRQIHCLIQKRGLLYDGDFLGVSLLVMYM 698

Query: 379 KCGVIDNAYNIFSNM-VSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFL 437
                 +A  +FS     +  + W +++ G + +G + E L++++ M  +   P+  TF 
Sbjct: 699 NSQRKTDADILFSEFQYPKSTILWTAIISGHTQNGCSEEALQLYQEMHRNNARPDQATFA 758

Query: 438 GILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPF 497
            +L ACS    +  G  + + +F V  +        +++++  + G +K + +    +  
Sbjct: 759 SVLRACSILASLGDGRMIHSLIFHV-GLDSDELTGSAVVDMYAKCGDMKSSVQVFEEMGS 817

Query: 498 EPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNA-PAHVVLCNIYAA---SGRHV 553
           + D   W +++   GF +     AE+A K   E+      P  V    +  A   +GR V
Sbjct: 818 KNDVISWNSMI--VGFAKNG--YAENALKIFDEMKHTRIRPDDVTFLGVLTACSHAGR-V 872

Query: 554 EEHKLRMDMGLKGVRKVP 571
            E +   D+ +   + VP
Sbjct: 873 SEGREIFDIMVHSYKIVP 890



 Score =  148 bits (374), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 131/548 (23%), Positives = 244/548 (44%), Gaps = 84/548 (15%)

Query: 52  FLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPER--------N 103
           F      S  +R   +  E  + +    IC L    R+ + R  F+E P+R         
Sbjct: 44  FHHQSNFSTIQRQVNQTSEHKIFTHLLKIC-LQQCQRI-KIRHPFDETPQRLAQASRTSK 101

Query: 104 VVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEE 163
            +   ++  G    G L                  +A++  Y +C  +  A   F ++E+
Sbjct: 102 TIHAQTLKFGFGSKGRLG-----------------SAIVDLYAKCGNVEFAAKAFNQLEK 144

Query: 164 RNVVTWTSMISGYCRAGEVEEGYCLFRRMPR----KNVVSWTAMIG-------------- 205
           R+++ W S++S Y R G +E+    F  +       N  ++  ++               
Sbjct: 145 RDILAWNSVLSMYSRQGSLEQVIWCFGSLQNCGVSPNQFTYAIVLSSCARLVDIDLGKQV 204

Query: 206 -------GFAWNGFHKESLL-------LFIEMKGICDNGNNCNVQSCNSMINGYIRFGRL 251
                  GF +N F + SL+         ++ + I D   + +  S  +MI GY++ G  
Sbjct: 205 HCGVIKMGFEFNSFCEGSLIDMYSKCGSLVDARKIFDAVVDPDTVSWTAMIAGYVQVGLP 264

Query: 252 EEAQNLFDTVP----VRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGL 307
           EEA  +F+ +     V D++++ ++I   + +G++ +A  LF  MP+ + VAW  MISG 
Sbjct: 265 EEALKVFEDMQKLGLVPDQVAFVTVITACVGLGRLDDACDLFVQMPNTNVVAWNVMISGH 324

Query: 308 VQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDL 367
           V+    +EA   F  M   GV    +T   +  A  +   ++ G  +H   +K    S++
Sbjct: 325 VKRGCDIEAIDFFKNMWKTGVKSTRSTLGSVLSAIASLEALNYGLLVHAQAIKQGLNSNV 384

Query: 368 ILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLES 427
            + + LI+MYAKC  ++ A  +F  +  R+LV WN+M+ G++ +G A++ +K+F  M   
Sbjct: 385 YVGSSLINMYAKCEKMEAAKKVFDALDERNLVLWNAMLGGYAQNGYASKVMKLFSEMRGC 444

Query: 428 GTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYV----SMINLLGRAG 483
           G  P+  T+  ILSAC+    +  G +L +     + I+   E+ +    +++++  + G
Sbjct: 445 GFWPDEFTYTSILSACACLECLEMGRQLHS-----FIIKHNFEYNLFVENTLVDMYAKCG 499

Query: 484 KIKEAEEFVLRLPFE----PDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAH 539
            ++EA     R  FE     D+  W A++   G+ +   E       R + LD + AP  
Sbjct: 500 ALEEA-----RQQFEFIRNRDNVSWNAII--VGYVQEEDEDEAFNMFRRMILDGI-APDE 551

Query: 540 VVLCNIYA 547
           V L +I +
Sbjct: 552 VSLASILS 559



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 80/158 (50%), Gaps = 12/158 (7%)

Query: 2   SERNHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQ------- 54
           SE  +PKS ++  T+ I+ +++ G  +EA  L+Q M + N     A  +  L+       
Sbjct: 711 SEFQYPKSTIL-WTAIISGHTQNGCSEEALQLYQEMHRNNARPDQATFASVLRACSILAS 769

Query: 55  --NGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERN-VVSWNSMV 111
             +GR+  +  +F    + + ++ +A++   A  G +  + ++FEEM  +N V+SWNSM+
Sbjct: 770 LGDGRMIHS-LIFHVGLDSDELTGSAVVDMYAKCGDMKSSVQVFEEMGSKNDVISWNSMI 828

Query: 112 VGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECC 149
           VG  +NG    A K+F+ M    +   +    G +  C
Sbjct: 829 VGFAKNGYAENALKIFDEMKHTRIRPDDVTFLGVLTAC 866


>gi|356533814|ref|XP_003535453.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Glycine max]
          Length = 782

 Score =  327 bits (838), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 199/619 (32%), Positives = 314/619 (50%), Gaps = 28/619 (4%)

Query: 7   PKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQ--RNVVSYNAMLSGFLQNGRLSEARRL 64
           PK  +V  T+ ++ YS  G I  A  LF   P   R+ VSYNAM++ F  +     A +L
Sbjct: 58  PKPDIVAATTMLSAYSAAGNIKLAHQLFNATPMSIRDTVSYNAMITAFSHSHDGHAALQL 117

Query: 65  FEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELN--- 121
           F +M     V        +  A  +    +   +     V  W ++ V  + N  ++   
Sbjct: 118 FVQMKRLGFVPDPFTFSSVLGALSLIADEETHCQQLHCEVFKWGALSVPSVLNALMSCYV 177

Query: 122 ---------------EARKVFNSMPI--KNVISWNAMIAGYVECCMMGEAIVLFEEMEER 164
                           ARK+F+  P   ++  +W  +IAGYV    +  A  L E M + 
Sbjct: 178 SCASSPLVNSCVLMAAARKLFDEAPPGRRDEPAWTTIIAGYVRNDDLVAARELLEGMTDH 237

Query: 165 NVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNV----VSWTAMIGGFAWNG-FHKESLLL 219
             V W +MISGY   G  EE + L RRM    +     ++T++I   +  G F+    + 
Sbjct: 238 IAVAWNAMISGYVHRGFYEEAFDLLRRMHSLGIQLDEYTYTSVISAASNAGLFNIGRQVH 297

Query: 220 FIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSV 279
              ++ +     +  +   N++I  Y R G+L EA+ +FD +PV+D +SW +++ G ++ 
Sbjct: 298 AYVLRTVVQPSGHFVLSVNNALITLYTRCGKLVEARRVFDKMPVKDLVSWNAILSGCVNA 357

Query: 280 GQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLF 339
            ++  A  +F  MP R  + WT MISGL QN    E   LF +M+  G+ P +  ++   
Sbjct: 358 RRIEEANSIFREMPVRSLLTWTVMISGLAQNGFGEEGLKLFNQMKLEGLEPCDYAYAGAI 417

Query: 340 GAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLV 399
            +     ++D G+Q+H  +++   +S L + N LI+MY++CG+++ A  +F  M   D V
Sbjct: 418 ASCSVLGSLDNGQQLHSQIIQLGHDSSLSVGNALITMYSRCGLVEAADTVFLTMPYVDSV 477

Query: 400 SWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAM 459
           SWN+M+   + HG   + ++++E ML+    P+ +TFL ILSACSHAGLV  G   F+ M
Sbjct: 478 SWNAMIAALAQHGHGVQAIQLYEKMLKEDILPDRITFLTILSACSHAGLVKEGRHYFDTM 537

Query: 460 FDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAE 519
              Y I P  +HY  +I+LL RAG   EA+     +PFEP   IW ALL  C +  GN E
Sbjct: 538 RVCYGITPEEDHYSRLIDLLCRAGMFSEAKNVTESMPFEPGAPIWEALLAGC-WIHGNME 596

Query: 520 IAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRN 579
           +   AA RLLEL P     ++ L N+YAA G+  E  ++R  M  +GV+K PGCSW+   
Sbjct: 597 LGIQAADRLLELMPQQDGTYISLSNMYAALGQWDEVARVRKLMRERGVKKEPGCSWIEVE 656

Query: 580 GGIQMFLSGDKIPAQVAEI 598
             + +FL  D +  +V  +
Sbjct: 657 NMVHVFLVDDAVHPEVHAV 675



 Score =  155 bits (391), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 127/495 (25%), Positives = 213/495 (43%), Gaps = 94/495 (18%)

Query: 139 NAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPR--KN 196
           N +I  Y +   +  A  LF+++ + ++V  T+M+S Y  AG ++  + LF   P   ++
Sbjct: 35  NRLIDHYCKSFNIPYARYLFDKIPKPDIVAATTMLSAYSAAGNIKLAHQLFNATPMSIRD 94

Query: 197 VVSWTAMIGGFAWNGFHKESLLLFIEMKG-------------------ICDNGNNCNVQS 237
            VS+ AMI  F+ +     +L LF++MK                    I D   +C    
Sbjct: 95  TVSYNAMITAFSHSHDGHAALQLFVQMKRLGFVPDPFTFSSVLGALSLIADEETHCQQLH 154

Query: 238 C--------------NSMINGYIRFGR---------LEEAQNLFDTVPV--RDEISWTSM 272
           C              N++++ Y+             +  A+ LFD  P   RDE +WT++
Sbjct: 155 CEVFKWGALSVPSVLNALMSCYVSCASSPLVNSCVLMAAARKLFDEAPPGRRDEPAWTTI 214

Query: 273 IDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLN 332
           I GY+    +  A  L   M D  AVAW AMISG V    + EA  L   M + G+    
Sbjct: 215 IAGYVRNDDLVAARELLEGMTDHIAVAWNAMISGYVHRGFYEEAFDLLRRMHSLGIQLDE 274

Query: 333 ATFSVLFGAAGATANIDLGRQIHCVLMKTESESD----LILENCLISMYAKCGVIDNAYN 388
            T++ +  AA      ++GRQ+H  +++T  +      L + N LI++Y +CG +  A  
Sbjct: 275 YTYTSVISAASNAGLFNIGRQVHAYVLRTVVQPSGHFVLSVNNALITLYTRCGKLVEARR 334

Query: 389 IFSNMVSRDLVSWNS-------------------------------MVMGFSHHGLANET 417
           +F  M  +DLVSWN+                               M+ G + +G   E 
Sbjct: 335 VFDKMPVKDLVSWNAILSGCVNARRIEEANSIFREMPVRSLLTWTVMISGLAQNGFGEEG 394

Query: 418 LKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVS--- 474
           LK+F  M   G  P    + G +++CS  G +  G +L + +     IQ G +  +S   
Sbjct: 395 LKLFNQMKLEGLEPCDYAYAGAIASCSVLGSLDNGQQLHSQI-----IQLGHDSSLSVGN 449

Query: 475 -MINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDP 533
            +I +  R G ++ A+   L +P+  D   W A++ A     G+   A    +++L+ D 
Sbjct: 450 ALITMYSRCGLVEAADTVFLTMPY-VDSVSWNAMIAALA-QHGHGVQAIQLYEKMLKEDI 507

Query: 534 LNAPAHVVLCNIYAA 548
           L  P  +    I +A
Sbjct: 508 L--PDRITFLTILSA 520



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 98/379 (25%), Positives = 160/379 (42%), Gaps = 57/379 (15%)

Query: 239 NSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMP--DRD 296
           N +I+ Y +   +  A+ LFD +P  D ++ T+M+  Y + G +  A+ LF+  P   RD
Sbjct: 35  NRLIDHYCKSFNIPYARYLFDKIPKPDIVAATTMLSAYSAAGNIKLAHQLFNATPMSIRD 94

Query: 297 AVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLG-RQIH 355
            V++ AMI+    +     A  LF++M+  G  P   TFS + GA    A+ +   +Q+H
Sbjct: 95  TVSYNAMITAFSHSHDGHAALQLFVQMKRLGFVPDPFTFSSVLGALSLIADEETHCQQLH 154

Query: 356 CVLMKTESESDLILENCLISMYAKC----------------------------------- 380
           C + K  + S   + N L+S Y  C                                   
Sbjct: 155 CEVFKWGALSVPSVLNALMSCYVSCASSPLVNSCVLMAAARKLFDEAPPGRRDEPAWTTI 214

Query: 381 --GVIDN-----AYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNS 433
             G + N     A  +   M     V+WN+M+ G+ H G   E   +   M   G   + 
Sbjct: 215 IAGYVRNDDLVAARELLEGMTDHIAVAWNAMISGYVHRGFYEEAFDLLRRMHSLGIQLDE 274

Query: 434 VTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYV-----SMINLLGRAGKIKEA 488
            T+  ++SA S+AGL + G ++   +     +QP   H+V     ++I L  R GK+ EA
Sbjct: 275 YTYTSVISAASNAGLFNIGRQVHAYVLRTV-VQPS-GHFVLSVNNALITLYTRCGKLVEA 332

Query: 489 EEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAA 548
                ++P + D   W A+L  C     NA   E A     E+   +     V+ +  A 
Sbjct: 333 RRVFDKMPVK-DLVSWNAILSGC----VNARRIEEANSIFREMPVRSLLTWTVMISGLAQ 387

Query: 549 SGRHVEEHKLRMDMGLKGV 567
           +G   E  KL   M L+G+
Sbjct: 388 NGFGEEGLKLFNQMKLEGL 406


>gi|359482718|ref|XP_002263673.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Vitis vinifera]
          Length = 1088

 Score =  327 bits (837), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 204/662 (30%), Positives = 333/662 (50%), Gaps = 82/662 (12%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPER------ 71
           I  Y+K    +    +F  M +RN V++N+++S   Q G  ++A  LF  M E       
Sbjct: 318 IDMYAKCDDEESCLKVFDEMGERNQVTWNSIISAEAQFGHFNDALVLFLRMQESGYKSNR 377

Query: 72  -NVVSWTAMICGLADAGRVCEAR-KLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNS 129
            N+ S      GLAD G+  E    L   +   +++  +++V    + G + EA +VF S
Sbjct: 378 FNLGSILMASAGLADIGKGRELHGHLVRNLLNSDIILGSALVDMYSKCGMVEEAHQVFRS 437

Query: 130 MPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEE-------------------------- 163
           +  +N +S+NA++AGYV+     EA+ L+ +M+                           
Sbjct: 438 LLERNEVSYNALLAGYVQEGKAEEALELYHDMQSEDGIQPDQFTFTTLLTLCANQRNDNQ 497

Query: 164 --------------RNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAW 209
                         +N++  T ++  Y   G +     +F RM  +N  SW +MI G+  
Sbjct: 498 GRQIHAHLIRANITKNIIVETELVHMYSECGRLNYAKEIFNRMAERNAYSWNSMIEGYQQ 557

Query: 210 NGFHKESLLLFIEMK--GICDNGNNCN--VQSCNSM------------------------ 241
           NG  +E+L LF +M+  GI  +  + +  + SC S+                        
Sbjct: 558 NGETQEALRLFKQMQLNGIKPDCFSLSSMLSSCVSLSDSQKGRELHNFIVRNTMEEEGIL 617

Query: 242 ----INGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDA 297
               ++ Y + G ++ A  ++D    +D I    M+  +++ G+ ++A  LF  M  R+ 
Sbjct: 618 QVVLVDMYAKCGSMDYAWKVYDQTIKKDVILNNVMVSAFVNSGRANDAKNLFDQMEQRNT 677

Query: 298 VAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCV 357
             W ++++G     L  E+   F+EM    +     T   +     +   ++ G Q+H +
Sbjct: 678 ALWNSILAGYANKGLKKESFNHFLEMLESDIEYDVLTMVTIVNLCSSLPALEHGDQLHSL 737

Query: 358 LMKTE-SESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANE 416
           ++K       ++LE  L+ MY+KCG I  A  +F NM  +++VSWN+M+ G+S HG + E
Sbjct: 738 IIKKGFVNCSVVLETALVDMYSKCGAITKARTVFDNMNGKNIVSWNAMISGYSKHGCSKE 797

Query: 417 TLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMI 476
            L ++E M + G +PN VTFL ILSACSH GLV  G  +F +M + Y I+   EHY  M+
Sbjct: 798 ALILYEEMPKKGMYPNEVTFLAILSACSHTGLVEEGLRIFTSMQEDYNIEAKAEHYTCMV 857

Query: 477 NLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNA 536
           +LLGRAG++++A+EFV ++P EP+   WGALLGAC     + ++   AA+RL ELDP N 
Sbjct: 858 DLLGRAGRLEDAKEFVEKMPIEPEVSTWGALLGACR-VHKDMDMGRLAAQRLFELDPQNP 916

Query: 537 PAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVA 596
             +V++ NIYAA+GR  E   +R  M +KGV+K PG SW+  N  IQ+F +G K   +  
Sbjct: 917 GPYVIMSNIYAAAGRWKEVEDIRQMMKMKGVKKDPGVSWIEINSEIQIFHAGSKTHPKTE 976

Query: 597 EI 598
           EI
Sbjct: 977 EI 978



 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 129/499 (25%), Positives = 230/499 (46%), Gaps = 58/499 (11%)

Query: 14  LTSSITKYSKRGFIDE---AKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEM-- 68
           +T  +  Y++ G +D+   A+ LF+ MP+RN+ ++N M+  + +     E  RL+  M  
Sbjct: 109 MTKILMLYARSGCLDDLCYARKLFEEMPERNLTAWNTMILAYARVDDYMEVLRLYGRMRG 168

Query: 69  -----PERNVVSWTAMICGLADAGRVCEARKLFEEMPER----NVVSWNSMVVGLIRNGE 119
                 +    S       + D G V   R+L   + +     N+    ++V G  R G 
Sbjct: 169 SGNFSDKFTFPSVIKACIAMEDMGGV---RQLQSSVVKAGLNCNLFVGGALVDGYARFGW 225

Query: 120 LNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNV----VTWTS---- 171
           +++A    + +   +V++WNA+IAGYV+     EA  +F+ M +  V     T+ S    
Sbjct: 226 MDDAVTSLDEIEGTSVVTWNAVIAGYVKILSWEEAWGIFDRMLKIGVCPDNFTFASALRV 285

Query: 172 -------------------------------MISGYCRAGEVEEGYCLFRRMPRKNVVSW 200
                                          +I  Y +  + E    +F  M  +N V+W
Sbjct: 286 CGALRSRDGGKQVHSKLIACGFKGDTFVGNALIDMYAKCDDEESCLKVFDEMGERNQVTW 345

Query: 201 TAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQ-NLFD 259
            ++I   A  G   ++L+LF+ M+      N  N+ S      G    G+  E   +L  
Sbjct: 346 NSIISAEAQFGHFNDALVLFLRMQESGYKSNRFNLGSILMASAGLADIGKGRELHGHLVR 405

Query: 260 TVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYL 319
            +   D I  ++++D Y   G V  A+ +F ++ +R+ V++ A+++G VQ     EA  L
Sbjct: 406 NLLNSDIILGSALVDMYSKCGMVEEAHQVFRSLLERNEVSYNALLAGYVQEGKAEEALEL 465

Query: 320 FMEMRAH-GVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYA 378
           + +M++  G+ P   TF+ L        N + GRQIH  L++     ++I+E  L+ MY+
Sbjct: 466 YHDMQSEDGIQPDQFTFTTLLTLCANQRNDNQGRQIHAHLIRANITKNIIVETELVHMYS 525

Query: 379 KCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLG 438
           +CG ++ A  IF+ M  R+  SWNSM+ G+  +G   E L++F+ M  +G  P+  +   
Sbjct: 526 ECGRLNYAKEIFNRMAERNAYSWNSMIEGYQQNGETQEALRLFKQMQLNGIKPDCFSLSS 585

Query: 439 ILSACSHAGLVSRGWELFN 457
           +LS+C       +G EL N
Sbjct: 586 MLSSCVSLSDSQKGRELHN 604



 Score =  151 bits (382), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 116/461 (25%), Positives = 220/461 (47%), Gaps = 23/461 (4%)

Query: 89  VCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVEC 148
           +C ARKLFEEMPERN+ +WN+M++   R  +  E  +++  M      S        ++ 
Sbjct: 125 LCYARKLFEEMPERNLTAWNTMILAYARVDDYMEVLRLYGRMRGSGNFSDKFTFPSVIKA 184

Query: 149 CMMGEAIVLFEEMEER--------NVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSW 200
           C+  E +    +++          N+    +++ GY R G +++       +   +VV+W
Sbjct: 185 CIAMEDMGGVRQLQSSVVKAGLNCNLFVGGALVDGYARFGWMDDAVTSLDEIEGTSVVTW 244

Query: 201 TAMIGGFAWNGFHKESLLLFIEMK--GIC-DNGNNCN-VQSCNSMINGYIRFGRLEEAQN 256
            A+I G+      +E+  +F  M   G+C DN    + ++ C ++ +   R G  +    
Sbjct: 245 NAVIAGYVKILSWEEAWGIFDRMLKIGVCPDNFTFASALRVCGALRS---RDGGKQVHSK 301

Query: 257 LFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEA 316
           L       D     ++ID Y       +   +F  M +R+ V W ++IS   Q   F +A
Sbjct: 302 LIACGFKGDTFVGNALIDMYAKCDDEESCLKVFDEMGERNQVTWNSIISAEAQFGHFNDA 361

Query: 317 TYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISM 376
             LF+ M+  G          +  A+   A+I  GR++H  L++    SD+IL + L+ M
Sbjct: 362 LVLFLRMQESGYKSNRFNLGSILMASAGLADIGKGRELHGHLVRNLLNSDIILGSALVDM 421

Query: 377 YAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESML-ESGTHPNSVT 435
           Y+KCG+++ A+ +F +++ R+ VS+N+++ G+   G A E L+++  M  E G  P+  T
Sbjct: 422 YSKCGMVEEAHQVFRSLLERNEVSYNALLAGYVQEGKAEEALELYHDMQSEDGIQPDQFT 481

Query: 436 FLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRL 495
           F  +L+ C++    ++G ++ +A      I         ++++    G++  A+E   R+
Sbjct: 482 FTTLLTLCANQRNDNQGRQI-HAHLIRANITKNIIVETELVHMYSECGRLNYAKEIFNRM 540

Query: 496 PFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNA 536
             E +   W +++   G+ + N E  E  A RL +   LN 
Sbjct: 541 A-ERNAYSWNSMIE--GY-QQNGETQE--ALRLFKQMQLNG 575



 Score =  135 bits (340), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 128/600 (21%), Positives = 231/600 (38%), Gaps = 180/600 (30%)

Query: 4   RNHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARR 63
           RN   S ++  ++ +  YSK G ++EA  +F+ + +RN VSYNA+L+G++Q G+  EA  
Sbjct: 405 RNLLNSDIILGSALVDMYSKCGMVEEAHQVFRSLLERNEVSYNALLAGYVQEGKAEEALE 464

Query: 64  LFEEM-------PE---------------------------------RNVVSWTAMICGL 83
           L+ +M       P+                                 +N++  T ++   
Sbjct: 465 LYHDMQSEDGIQPDQFTFTTLLTLCANQRNDNQGRQIHAHLIRANITKNIIVETELVHMY 524

Query: 84  ADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIK---------- 133
           ++ GR+  A+++F  M ERN  SWNSM+ G  +NGE  EA ++F  M +           
Sbjct: 525 SECGRLNYAKEIFNRMAERNAYSWNSMIEGYQQNGETQEALRLFKQMQLNGIKPDCFSLS 584

Query: 134 -------------------NVISWNAM----------IAGYVECCMMGEAIVLFEEMEER 164
                              N I  N M          +  Y +C  M  A  ++++  ++
Sbjct: 585 SMLSSCVSLSDSQKGRELHNFIVRNTMEEEGILQVVLVDMYAKCGSMDYAWKVYDQTIKK 644

Query: 165 NVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEM- 223
           +V+    M+S +  +G   +   LF +M ++N   W +++ G+A  G  KES   F+EM 
Sbjct: 645 DVILNNVMVSAFVNSGRANDAKNLFDQMEQRNTALWNSILAGYANKGLKKESFNHFLEML 704

Query: 224 --------------KGIC------DNGN------------NCNVQSCNSMINGYIRFGRL 251
                           +C      ++G+            NC+V    ++++ Y + G +
Sbjct: 705 ESDIEYDVLTMVTIVNLCSSLPALEHGDQLHSLIIKKGFVNCSVVLETALVDMYSKCGAI 764

Query: 252 EEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNE 311
            +A+ +FD +  ++ +SW +MI GY   G    A  L+  MP +                
Sbjct: 765 TKARTVFDNMNGKNIVSWNAMISGYSKHGCSKEALILYEEMPKK---------------- 808

Query: 312 LFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTES-ESDLILE 370
                          G+ P   TF  +  A   T  ++ G +I   + +  + E+     
Sbjct: 809 ---------------GMYPNEVTFLAILSACSHTGLVEEGLRIFTSMQEDYNIEAKAEHY 853

Query: 371 NCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTH 430
            C++ +  + G +++A      M                                     
Sbjct: 854 TCMVDLLGRAGRLEDAKEFVEKM----------------------------------PIE 879

Query: 431 PNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEE 490
           P   T+  +L AC     +  G      +F++    PGP  YV M N+   AG+ KE E+
Sbjct: 880 PEVSTWGALLGACRVHKDMDMGRLAAQRLFELDPQNPGP--YVIMSNIYAAAGRWKEVED 937



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 109/412 (26%), Positives = 186/412 (45%), Gaps = 30/412 (7%)

Query: 170 TSMISGYCRAGEVEE---GYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGI 226
           T ++  Y R+G +++      LF  MP +N+ +W  MI  +A    + E L L+  M+G 
Sbjct: 110 TKILMLYARSGCLDDLCYARKLFEEMPERNLTAWNTMILAYARVDDYMEVLRLYGRMRG- 168

Query: 227 CDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWT-----SMIDGYLSVGQ 281
             +GN  +  +  S+I   I    +   + L  +V V+  ++       +++DGY   G 
Sbjct: 169 --SGNFSDKFTFPSVIKACIAMEDMGGVRQLQSSV-VKAGLNCNLFVGGALVDGYARFGW 225

Query: 282 VSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGA 341
           + +A      +     V W A+I+G V+   + EA  +F  M   GV P N TF+     
Sbjct: 226 MDDAVTSLDEIEGTSVVTWNAVIAGYVKILSWEEAWGIFDRMLKIGVCPDNFTFASALRV 285

Query: 342 AGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSW 401
            GA  + D G+Q+H  L+    + D  + N LI MYAKC   ++   +F  M  R+ V+W
Sbjct: 286 CGALRSRDGGKQVHSKLIACGFKGDTFVGNALIDMYAKCDDEESCLKVFDEMGERNQVTW 345

Query: 402 NSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFD 461
           NS++   +  G  N+ L +F  M ESG   N      IL A +    + +G EL   +  
Sbjct: 346 NSIISAEAQFGHFNDALVLFLRMQESGYKSNRFNLGSILMASAGLADIGKGRELHGHLVR 405

Query: 462 VY---KIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFC-EGN 517
                 I  G     +++++  + G ++EA + V R   E +   + ALL   G+  EG 
Sbjct: 406 NLLNSDIILGS----ALVDMYSKCGMVEEAHQ-VFRSLLERNEVSYNALLA--GYVQEGK 458

Query: 518 AEIA-----EHAAKRLLELDPLNAPAHVVLC--NIYAASGRHVEEHKLRMDM 562
           AE A     +  ++  ++ D       + LC        GR +  H +R ++
Sbjct: 459 AEEALELYHDMQSEDGIQPDQFTFTTLLTLCANQRNDNQGRQIHAHLIRANI 510



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 64/208 (30%), Positives = 105/208 (50%), Gaps = 18/208 (8%)

Query: 11  VVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPE 70
           VV  T+ +  YSK G I +A+ +F  M  +N+VS+NAM+SG+ ++G   EA  L+EEMP+
Sbjct: 748 VVLETALVDMYSKCGAITKARTVFDNMNGKNIVSWNAMISGYSKHGCSKEALILYEEMPK 807

Query: 71  R----NVVSWTAMICGLADAGRVCEARKLFEEMPERNVVS-----WNSMVVGLIRNGELN 121
           +    N V++ A++   +  G V E  ++F  M E   +      +  MV  L R G L 
Sbjct: 808 KGMYPNEVTFLAILSACSHTGLVEEGLRIFTSMQEDYNIEAKAEHYTCMVDLLGRAGRLE 867

Query: 122 EARKVFNSMPIK-NVISWNAMIAG---YVECCMMGEAIVLFEEMEERNVVTWTSMISGYC 177
           +A++    MPI+  V +W A++     + +  M   A     E++ +N   +  M + Y 
Sbjct: 868 DAKEFVEKMPIEPEVSTWGALLGACRVHKDMDMGRLAAQRLFELDPQNPGPYVIMSNIYA 927

Query: 178 RAGEVEEGYCLFRRMPRKNV-----VSW 200
            AG  +E   + + M  K V     VSW
Sbjct: 928 AAGRWKEVEDIRQMMKMKGVKKDPGVSW 955



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/122 (26%), Positives = 58/122 (47%), Gaps = 5/122 (4%)

Query: 325 AHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVID 384
           A  V PL   +S L      + +   G+ IH  ++      D  L   ++ +YA+ G +D
Sbjct: 66  ASDVNPL--PYSSLIQDCIDSNSFQRGKSIHTQMISNGYNPDAYLMTKILMLYARSGCLD 123

Query: 385 N---AYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILS 441
           +   A  +F  M  R+L +WN+M++ ++      E L+++  M  SG   +  TF  ++ 
Sbjct: 124 DLCYARKLFEEMPERNLTAWNTMILAYARVDDYMEVLRLYGRMRGSGNFSDKFTFPSVIK 183

Query: 442 AC 443
           AC
Sbjct: 184 AC 185


>gi|359482115|ref|XP_003632713.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
          Length = 989

 Score =  326 bits (836), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 203/630 (32%), Positives = 317/630 (50%), Gaps = 51/630 (8%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMP----ERNV 73
           +T YS+ G +  A+ +F  M +R+ +SYN+++SG  Q G    A +LFE+M     + + 
Sbjct: 255 VTLYSRWGNLIAAEQIFSKMHRRDRISYNSLISGLAQRGFSDRALQLFEKMQLDCMKPDC 314

Query: 74  VSWTAMICGLADAGRVCEARKL-----------------------------------FEE 98
           V+  +++   A  G   + ++L                                   F  
Sbjct: 315 VTVASLLSACASVGAGYKGKQLHSYVIKMGMSSDLIIEGSLLDLYVKCFDIETAHEYFLT 374

Query: 99  MPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLF 158
               NVV WN M+V   + G L+E+  +F  M I+ ++         +  C    A+ L 
Sbjct: 375 TETENVVLWNVMLVAYGQLGNLSESYWIFLQMQIEGLMPNQYTYPSILRTCTSLGALDLG 434

Query: 159 EEMEER--------NVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWN 210
           E++  +        NV   + +I  Y + GE++    + +R+  ++VVSWTAMI G+  +
Sbjct: 435 EQIHTQVIKSGFQFNVYVCSVLIDMYAKHGELDTARGILQRLREEDVVSWTAMIAGYTQH 494

Query: 211 GFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGY--IRFGRLEEAQNLFDTVPVRDEIS 268
               E+L LF EM+      +N    S  S   G   +  G+   AQ+          I 
Sbjct: 495 DLFAEALKLFQEMENQGIRSDNIGFSSAISACAGIQALNQGQQIHAQSYISGYSEDLSIG 554

Query: 269 WTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGV 328
             +++  Y   G+  +AY  F  +  +D ++W A+ISG  Q+    EA  +F +M   GV
Sbjct: 555 -NALVSLYARCGRAQDAYLAFEKIDAKDNISWNALISGFAQSGHCEEALQVFSQMNQAGV 613

Query: 329 PPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYN 388
                TF     A   TANI  G+QIH +++KT  +S+    N LI++Y+KCG I++A  
Sbjct: 614 EANLFTFGSAVSATANTANIKQGKQIHAMMIKTGYDSETEASNVLITLYSKCGSIEDAKR 673

Query: 389 IFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGL 448
            F  M  +++VSWN+M+ G+S HG  +E + +FE M + G  PN VTF+G+LSACSH GL
Sbjct: 674 EFFEMPEKNVVSWNAMITGYSQHGYGSEAVSLFEEMKQLGLMPNHVTFVGVLSACSHVGL 733

Query: 449 VSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALL 508
           V+ G   F +M   + + P PEHYV +++LLGRA  +  A EF+  +P EPD  IW  LL
Sbjct: 734 VNEGLSYFRSMSKEHGLVPKPEHYVCVVDLLGRAALLCCAREFIEEMPIEPDAMIWRTLL 793

Query: 509 GACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVR 568
            AC     N EI E AA+ LLEL+P ++  +V+L N+YA SG+     + R  M  +GV+
Sbjct: 794 SACT-VHKNIEIGEFAARHLLELEPEDSATYVLLSNMYAVSGKWDYRDRTRQMMKDRGVK 852

Query: 569 KVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
           K PG SW+     I  F  GD++     +I
Sbjct: 853 KEPGRSWIEVKNSIHAFFVGDRLHPLAEQI 882



 Score =  179 bits (454), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 156/616 (25%), Positives = 260/616 (42%), Gaps = 123/616 (19%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWT 77
           I  YSK G +D AK +F+ +  ++ VS+ AM+SG  QNGR  EA  LF +M +  V+   
Sbjct: 154 IDLYSKNGHVDLAKLVFERLFLKDSVSWVAMISGLSQNGREDEAILLFCQMHKSAVIPTP 213

Query: 78  AMICGLADAGRVCEARKLFEEMPERNVVSW---------NSMVVGLIRNGELNEARKVFN 128
            +   +  A    E  KL E++    +V W         N++V    R G L  A ++F+
Sbjct: 214 YVFSSVLSACTKIELFKLGEQL-HGFIVKWGLSSETFVCNALVTLYSRWGNLIAAEQIFS 272

Query: 129 SMPIKNVISWNAMIAGYVECCMMGEAIVLFEEME----ERNVVTWTSMISG--------- 175
            M  ++ IS+N++I+G  +      A+ LFE+M+    + + VT  S++S          
Sbjct: 273 KMHRRDRISYNSLISGLAQRGFSDRALQLFEKMQLDCMKPDCVTVASLLSACASVGAGYK 332

Query: 176 --------------------------YCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAW 209
                                     Y +  ++E  +  F     +NVV W  M+  +  
Sbjct: 333 GKQLHSYVIKMGMSSDLIIEGSLLDLYVKCFDIETAHEYFLTTETENVVLWNVMLVAYGQ 392

Query: 210 NGFHKESLLLFIEMK--------------------------------GICDNGNNCNVQS 237
            G   ES  +F++M+                                 +  +G   NV  
Sbjct: 393 LGNLSESYWIFLQMQIEGLMPNQYTYPSILRTCTSLGALDLGEQIHTQVIKSGFQFNVYV 452

Query: 238 CNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDA 297
           C+ +I+ Y + G L+ A+ +   +   D +SWT+MI GY                     
Sbjct: 453 CSVLIDMYAKHGELDTARGILQRLREEDVVSWTAMIAGY--------------------- 491

Query: 298 VAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCV 357
                      Q++LF EA  LF EM   G+   N  FS    A      ++ G+QIH  
Sbjct: 492 ----------TQHDLFAEALKLFQEMENQGIRSDNIGFSSAISACAGIQALNQGQQIHAQ 541

Query: 358 LMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANET 417
              +    DL + N L+S+YA+CG   +AY  F  + ++D +SWN+++ GF+  G   E 
Sbjct: 542 SYISGYSEDLSIGNALVSLYARCGRAQDAYLAFEKIDAKDNISWNALISGFAQSGHCEEA 601

Query: 418 LKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMIN 477
           L+VF  M ++G   N  TF   +SA ++   + +G ++ +AM          E    +I 
Sbjct: 602 LQVFSQMNQAGVEANLFTFGSAVSATANTANIKQGKQI-HAMMIKTGYDSETEASNVLIT 660

Query: 478 LLGRAGKIKEAEEFVLRLPFEPDHRIWGALL-GACGFCEGNAEIAEHAAKRLLELDP--- 533
           L  + G I++A+     +P E +   W A++ G      G+  ++     + L L P   
Sbjct: 661 LYSKCGSIEDAKREFFEMP-EKNVVSWNAMITGYSQHGYGSEAVSLFEEMKQLGLMPNHV 719

Query: 534 -----LNAPAHVVLCN 544
                L+A +HV L N
Sbjct: 720 TFVGVLSACSHVGLVN 735



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 127/518 (24%), Positives = 213/518 (41%), Gaps = 86/518 (16%)

Query: 41  NVVSYNAMLSGFLQNGRLSEAR----RLFEEMPERNVVSWTAMICGLADAGRVCEARKLF 96
           NV +Y  +  G   +G L +A+    R+F+   +   V  + +I      G V  A KLF
Sbjct: 9   NVQTYLWLFEGCFNSGSLLDAKKLHARIFKSGFDGEDVLGSRLIDIYLAHGEVDNAIKLF 68

Query: 97  EEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIV 156
           +++P  NV  WN ++ GL+     ++   +F+ M  +NV    +  A  +  C  G+A  
Sbjct: 69  DDIPSSNVSFWNKVISGLLAKKLASQVLGLFSLMITENVTPDESTFASVLRACSGGKAPF 128

Query: 157 LFEEMEERNVV---------TWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGF 207
              E     ++             +I  Y + G V+    +F R+  K+ VSW AMI G 
Sbjct: 129 QVTEQIHAKIIHHGFGSSPLVCNPLIDLYSKNGHVDLAKLVFERLFLKDSVSWVAMISGL 188

Query: 208 AWNGFHKESLLLFIEMKG--------------------------------ICDNGNNCNV 235
           + NG   E++LLF +M                                  I   G +   
Sbjct: 189 SQNGREDEAILLFCQMHKSAVIPTPYVFSSVLSACTKIELFKLGEQLHGFIVKWGLSSET 248

Query: 236 QSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDR 295
             CN+++  Y R+G L  A+ +F  +  RD IS+ S+                       
Sbjct: 249 FVCNALVTLYSRWGNLIAAEQIFSKMHRRDRISYNSL----------------------- 285

Query: 296 DAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIH 355
                   ISGL Q      A  LF +M+   + P   T + L  A  +      G+Q+H
Sbjct: 286 --------ISGLAQRGFSDRALQLFEKMQLDCMKPDCVTVASLLSACASVGAGYKGKQLH 337

Query: 356 CVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLAN 415
             ++K    SDLI+E  L+ +Y KC  I+ A+  F    + ++V WN M++ +   G  +
Sbjct: 338 SYVIKMGMSSDLIIEGSLLDLYVKCFDIETAHEYFLTTETENVVLWNVMLVAYGQLGNLS 397

Query: 416 ETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVS- 474
           E+  +F  M   G  PN  T+  IL  C+  G +  G ++   +     I+ G +  V  
Sbjct: 398 ESYWIFLQMQIEGLMPNQYTYPSILRTCTSLGALDLGEQIHTQV-----IKSGFQFNVYV 452

Query: 475 ---MINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLG 509
              +I++  + G++  A   + RL  E D   W A++ 
Sbjct: 453 CSVLIDMYAKHGELDTARGILQRLR-EEDVVSWTAMIA 489



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 93/355 (26%), Positives = 161/355 (45%), Gaps = 14/355 (3%)

Query: 228 DNGNNCNVQSCNSMINGYIRFGRLEEAQNL----FDTVPVRDEISWTSMIDGYLSVGQVS 283
           + G   NVQ+   +  G    G L +A+ L    F +    +++  + +ID YL+ G+V 
Sbjct: 3   ERGIRANVQTYLWLFEGCFNSGSLLDAKKLHARIFKSGFDGEDVLGSRLIDIYLAHGEVD 62

Query: 284 NAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATF-SVLFGAA 342
           NA  LF ++P  +   W  +ISGL+  +L  +   LF  M    V P  +TF SVL   +
Sbjct: 63  NAIKLFDDIPSSNVSFWNKVISGLLAKKLASQVLGLFSLMITENVTPDESTFASVLRACS 122

Query: 343 GATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWN 402
           G  A   +  QIH  ++     S  ++ N LI +Y+K G +D A  +F  +  +D VSW 
Sbjct: 123 GGKAPFQVTEQIHAKIIHHGFGSSPLVCNPLIDLYSKNGHVDLAKLVFERLFLKDSVSWV 182

Query: 403 SMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDV 462
           +M+ G S +G  +E + +F  M +S   P    F  +LSAC+   L   G +L      +
Sbjct: 183 AMISGLSQNGREDEAILLFCQMHKSAVIPTPYVFSSVLSACTKIELFKLGEQLHGF---I 239

Query: 463 YKIQPGPEHYV--SMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGAC---GFCEGN 517
            K     E +V  +++ L  R G +  AE+   ++    D   + +L+      GF +  
Sbjct: 240 VKWGLSSETFVCNALVTLYSRWGNLIAAEQIFSKM-HRRDRISYNSLISGLAQRGFSDRA 298

Query: 518 AEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPG 572
            ++ E      ++ D +   + +  C    A  +  + H   + MG+     + G
Sbjct: 299 LQLFEKMQLDCMKPDCVTVASLLSACASVGAGYKGKQLHSYVIKMGMSSDLIIEG 353



 Score = 62.0 bits (149), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 45/186 (24%), Positives = 84/186 (45%), Gaps = 1/186 (0%)

Query: 323 MRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGV 382
           M   G+     T+  LF     + ++   +++H  + K+  + + +L + LI +Y   G 
Sbjct: 1   MEERGIRANVQTYLWLFEGCFNSGSLLDAKKLHARIFKSGFDGEDVLGSRLIDIYLAHGE 60

Query: 383 IDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSA 442
           +DNA  +F ++ S ++  WN ++ G     LA++ L +F  M+     P+  TF  +L A
Sbjct: 61  VDNAIKLFDDIPSSNVSFWNKVISGLLAKKLASQVLGLFSLMITENVTPDESTFASVLRA 120

Query: 443 CSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHR 502
           CS      +  E  +A    +     P     +I+L  + G +  A+    RL F  D  
Sbjct: 121 CSGGKAPFQVTEQIHAKIIHHGFGSSPLVCNPLIDLYSKNGHVDLAKLVFERL-FLKDSV 179

Query: 503 IWGALL 508
            W A++
Sbjct: 180 SWVAMI 185



 Score = 43.9 bits (102), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 39/139 (28%), Positives = 66/139 (47%), Gaps = 14/139 (10%)

Query: 7   PKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQ----RNVVSYNAMLSGFLQNGRLSEAR 62
           P+  VV   + IT YS+ G+  EA +LF+ M Q     N V++  +LS     G ++E  
Sbjct: 679 PEKNVVSWNAMITGYSQHGYGSEAVSLFEEMKQLGLMPNHVTFVGVLSACSHVGLVNEGL 738

Query: 63  RLFEEMPERNVV-----SWTAMICGLADAGRVCEARKLFEEMP-ERNVVSWNSMVVGLI- 115
             F  M + + +      +  ++  L  A  +C AR+  EEMP E + + W +++     
Sbjct: 739 SYFRSMSKEHGLVPKPEHYVCVVDLLGRAALLCCAREFIEEMPIEPDAMIWRTLLSACTV 798

Query: 116 -RNGELNE--ARKVFNSMP 131
            +N E+ E  AR +    P
Sbjct: 799 HKNIEIGEFAARHLLELEP 817


>gi|302820798|ref|XP_002992065.1| hypothetical protein SELMODRAFT_134581 [Selaginella moellendorffii]
 gi|300140187|gb|EFJ06914.1| hypothetical protein SELMODRAFT_134581 [Selaginella moellendorffii]
          Length = 771

 Score =  326 bits (836), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 191/584 (32%), Positives = 320/584 (54%), Gaps = 20/584 (3%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPE-RNVVSW 76
           I  Y     I +A+ALF  MP  +  ++N M++ + +  RL +AR LF  M   R+VVSW
Sbjct: 80  IQAYVSSSRIHDARALFDSMPGFDAFTWNIMIAAYARINRLDDARELFHGMISGRDVVSW 139

Query: 77  TAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMP---IK 133
             ++ G A   R+ EA  LF  MP  + V+  S++ G   NG L EA+++F+ +     +
Sbjct: 140 AILVAGYARHDRLEEASALFRRMPLWDTVTCTSVLQGYAHNGHLAEAQELFDRIGGAGDR 199

Query: 134 NVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMP 193
           +  + NAMIA Y +   +  A  LF +++ RN  +W+ ++  Y + G ++     F RMP
Sbjct: 200 DATACNAMIAAYGKNARVDLAEGLFAQIKLRNAASWSLLLLTYAQNGHLDLAKKSFDRMP 259

Query: 194 RKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEE 253
           +++ +++TAM    +  G  + +  +   +  +       +V + N+++ GY R G L+E
Sbjct: 260 QRDSIAFTAMTAVLSDQGELRGAREMLRYLSAV-------DVIAWNALLEGYSRTGDLDE 312

Query: 254 AQNLFDTV---PVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQN 310
            + LF  +    V   +   ++++ Y   G+V +A  +   MP R +V+WTAMI+   QN
Sbjct: 313 VRRLFSAMEHRTVATTVVAGTLVNLYGKCGRVDDARRVLDAMPVRTSVSWTAMIAAYAQN 372

Query: 311 ELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESD-LIL 369
               EA  LF  M   G  P + T   +  +      + LG++IH  +  +   S  L+L
Sbjct: 373 GNAAEAINLFQCMDLEGAEPSDITLISVVDSCAVLGTLSLGKRIHARIRSSPLFSQSLML 432

Query: 370 ENCLISMYAKCGVIDNAYNIFSN--MVSRDLVSWNSMVMGFSHHGLANETLKVFESM-LE 426
            N +I+MY KCG ++ A  +F +  + +R +V+W +M+  ++ +G+  E +++F+ M ++
Sbjct: 433 LNAVITMYGKCGNLELAREVFESVPLRTRSVVTWTAMIRAYAQNGVGEEAIELFQEMVID 492

Query: 427 SGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIK 486
            GT PN VTFL +LSACSH G + + WE F +M   + + P  +HY  +++LLGRAG++ 
Sbjct: 493 GGTEPNRVTFLSVLSACSHLGQLEQAWEHFCSMGPDFGVPPAGDHYCCLVDLLGRAGRLG 552

Query: 487 EAEEFVLR-LPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNI 545
           EAE+ +LR   FE D   W A L AC    G+ E ++ AAKR+ EL+P N    V+L N+
Sbjct: 553 EAEKLLLRHKDFEADVVCWIAFLSACQM-NGDLERSQRAAKRVSELEPENVAGRVLLSNV 611

Query: 546 YAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGD 589
           YAA GR  +  ++R +M   GV+K  G SW+  N  +  F+  D
Sbjct: 612 YAAKGRRADVARIRNEMKSSGVKKFAGRSWIEINNRVHEFMVSD 655



 Score =  149 bits (376), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 119/426 (27%), Positives = 194/426 (45%), Gaps = 56/426 (13%)

Query: 4   RNHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMP---QRNVVSYNAMLSGFLQNGRLSE 60
           R  P    V  TS +  Y+  G + EA+ LF  +     R+  + NAM++ + +N R+  
Sbjct: 160 RRMPLWDTVTCTSVLQGYAHNGHLAEAQELFDRIGGAGDRDATACNAMIAAYGKNARVDL 219

Query: 61  ARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGEL 120
           A  LF ++  RN  SW+ ++   A  G +  A+K F+ MP+R+ +++ +M   L   GEL
Sbjct: 220 AEGLFAQIKLRNAASWSLLLLTYAQNGHLDLAKKSFDRMPQRDSIAFTAMTAVLSDQGEL 279

Query: 121 NEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWT---SMISGYC 177
             AR++   +   +VI+WNA++ GY     + E   LF  ME R V T     ++++ Y 
Sbjct: 280 RGAREMLRYLSAVDVIAWNALLEGYSRTGDLDEVRRLFSAMEHRTVATTVVAGTLVNLYG 339

Query: 178 RAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLF--IEMKGI--CDNGNNC 233
           + G V++   +   MP +  VSWTAMI  +A NG   E++ LF  ++++G    D     
Sbjct: 340 KCGRVDDARRVLDAMPVRTSVSWTAMIAAYAQNGNAAEAINLFQCMDLEGAEPSDITLIS 399

Query: 234 NVQSC-----------------------------NSMINGYIRFGRLEEAQNLFDTVPVR 264
            V SC                             N++I  Y + G LE A+ +F++VP+R
Sbjct: 400 VVDSCAVLGTLSLGKRIHARIRSSPLFSQSLMLLNAVITMYGKCGNLELAREVFESVPLR 459

Query: 265 DE--ISWTSMIDGYLSVGQVSNAYYLFHNM-------PDRDAVAWTAMISGLVQNELFVE 315
               ++WT+MI  Y   G    A  LF  M       P+R  V + +++S         +
Sbjct: 460 TRSVVTWTAMIRAYAQNGVGEEAIELFQEMVIDGGTEPNR--VTFLSVLSACSHLGQLEQ 517

Query: 316 ATYLFMEMRAH-GVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLI 374
           A   F  M    GVPP    +  L    G      LG     +L   + E+D++   C I
Sbjct: 518 AWEHFCSMGPDFGVPPAGDHYCCLVDLLGRAGR--LGEAEKLLLRHKDFEADVV---CWI 572

Query: 375 SMYAKC 380
           +  + C
Sbjct: 573 AFLSAC 578



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 69/339 (20%), Positives = 136/339 (40%), Gaps = 73/339 (21%)

Query: 234 NVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMP 293
           N +  N +I+ + + G  + A+ +F+ V + +E SW+ +I  Y+S  ++ +A  LF +MP
Sbjct: 41  NRRLTNLLIDLFGKCGDPDAARAVFNRVRLPNEYSWSCIIQAYVSSSRIHDARALFDSMP 100

Query: 294 --------------------------------DRDAVAWTAMISGLVQNELFVEATYLFM 321
                                            RD V+W  +++G  +++   EA+ LF 
Sbjct: 101 GFDAFTWNIMIAAYARINRLDDARELFHGMISGRDVVSWAILVAGYARHDRLEEASALFR 160

Query: 322 EMRAHGVPPLNATFSVLFGAAGATANIDLGR-QIHCVLMKTESESDLILENCLISMYAKC 380
            M      PL  T +      G   N  L   Q     +    + D    N +I+ Y K 
Sbjct: 161 RM------PLWDTVTCTSVLQGYAHNGHLAEAQELFDRIGGAGDRDATACNAMIAAYGKN 214

Query: 381 GVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGIL 440
             +D A  +F+ +  R+  SW+ +++ ++ +G  +   K F+ M +     +S+ F  + 
Sbjct: 215 ARVDLAEGLFAQIKLRNAASWSLLLLTYAQNGHLDLAKKSFDRMPQR----DSIAFTAMT 270

Query: 441 SACSHAGLVSRGWELF-----------NAMFDVY----------KIQPGPEHYV------ 473
           +  S  G +    E+            NA+ + Y          ++    EH        
Sbjct: 271 AVLSDQGELRGAREMLRYLSAVDVIAWNALLEGYSRTGDLDEVRRLFSAMEHRTVATTVV 330

Query: 474 --SMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGA 510
             +++NL G+ G++ +A   +  +P       W A++ A
Sbjct: 331 AGTLVNLYGKCGRVDDARRVLDAMPVRTSVS-WTAMIAA 368


>gi|449520177|ref|XP_004167110.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
          Length = 797

 Score =  325 bits (834), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 197/621 (31%), Positives = 316/621 (50%), Gaps = 34/621 (5%)

Query: 7   PKSLVVHLTSSITKYSKRGFIDEAKALFQLMP--QRNVVSYNAMLSGFLQNGRLSEARRL 64
           P    +  T+ IT Y   G ++  + +F   P   R+ V YNAM++G+  NG    A  L
Sbjct: 75  PNPDAIARTTLITAYCALGNLELGREIFNGTPLYMRDSVFYNAMITGYAHNGDGHSALEL 134

Query: 65  FEEMPERNV----VSWTAMI-----------------CGLADAGRVCEARKLFEEMPERN 103
           F  M   +      ++T+++                 C +   G  C +  +   +    
Sbjct: 135 FRAMRRDDFRPDDFTFTSVLSALVLFVGNEQQCGQMHCAVVKTGMGCVSSSVLNALLSVY 194

Query: 104 VVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEE 163
           V   + + +       +  ARK+F+ MP ++ ++W  MI GYV    +  A  +FE M E
Sbjct: 195 VKRASELGISC---SAMVSARKLFDEMPKRDELTWTTMITGYVRNDDLNGAREVFEAMVE 251

Query: 164 RNVVTWTSMISGYCRAGEVEEGYCLFRRMP----RKNVVSWTAMIGGFAWNGFHK--ESL 217
                W +MISGY   G  +E   L R+M     + + +++T +I   A  G  +  + +
Sbjct: 252 NLGAAWNAMISGYVHCGCFQEALTLCRKMRFLGIQFDDITYTTIISACANVGSFQMGKQV 311

Query: 218 LLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYL 277
             +I    +  N + C +   N++I  Y +  +++EA+ +F  +PVR+ I+W +++ GY+
Sbjct: 312 HAYILKNELNPNHSFC-LSVSNALITLYCKNNKVDEARKIFYAMPVRNIITWNAILSGYV 370

Query: 278 SVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSV 337
           + G++  A   F  MP ++ +  T MISGL QN    E   LF +MR  G  P +  F+ 
Sbjct: 371 NAGRMEEAKSFFEEMPVKNLLTLTVMISGLAQNGFGDEGLKLFKQMRLDGFEPCDFAFAG 430

Query: 338 LFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRD 397
              A      ++ GRQ+H  L+    ES L + N +ISMYAKCGV++ A ++F  M S D
Sbjct: 431 ALTACSVLGALENGRQLHAQLVHLGYESSLSVGNAMISMYAKCGVVEAAESVFVTMPSVD 490

Query: 398 LVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFN 457
           LVSWNSM+     HG   + +++F+ ML+ G  P+ +TFL +L+ACSHAGLV +G   FN
Sbjct: 491 LVSWNSMIAALGQHGHGVKAIELFDQMLKEGVFPDRITFLTVLTACSHAGLVEKGRHYFN 550

Query: 458 AMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGN 517
           +M + Y I P  +HY  M++L  RAG    A   +  +P +P   +W ALL  C    GN
Sbjct: 551 SMLESYGITPCEDHYARMVDLFCRAGMFSYARIVIDSMPSKPGAPVWEALLAGCRI-HGN 609

Query: 518 AEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLM 577
            ++   AA++L +L P N   +V+L NIYA  GR  E  K+R  M  + VRK P CSW+ 
Sbjct: 610 MDLGIEAAEQLFKLMPQNDGTYVLLSNIYADVGRWNEVAKVRKLMRDQAVRKEPACSWIE 669

Query: 578 RNGGIQMFLSGDKIPAQVAEI 598
               + +F+  D +  +V  +
Sbjct: 670 VENKVHVFMVDDDVHPEVLSV 690


>gi|225453947|ref|XP_002274056.1| PREDICTED: pentatricopeptide repeat-containing protein At2g45350,
           chloroplastic-like [Vitis vinifera]
          Length = 635

 Score =  325 bits (833), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 198/613 (32%), Positives = 324/613 (52%), Gaps = 59/613 (9%)

Query: 5   NHPKSLVVHLTSSITKYSKRGFIDEAKALF-------QLMPQRNVVSYNAMLSGFLQNGR 57
           N+P SL   +  + +  S +  ++ A+ LF       +   Q N   +NA++  F     
Sbjct: 44  NNP-SLTTRIILNFSSSSHKPLVEFARYLFMSRHFGRKHRKQDNPFLWNAIIKSFSHGED 102

Query: 58  LSEARRLFEEMPERNV----VSWTAMICGLADAGRVCEARKLFEEMPE----RNVVSWNS 109
             EA  +F  M E  V     S++ ++   +  G + E  ++   +       +V   N 
Sbjct: 103 PREAFVIFNLMLENGVCVDKFSFSLVLKACSRLGLIKEGMQIHGLLGRMEIGSDVFLQNC 162

Query: 110 MVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFE--EMEERNVV 167
           ++   +R G L  AR++F+ M  ++ +S+N+MI GYV+  M+  A  LF+   ME++N++
Sbjct: 163 LMCLYLRCGCLGIARQLFDRMMKRDSVSFNSMIDGYVKHGMVKSARELFDVMPMEQKNLI 222

Query: 168 TWTSMISGYCRAGE-VEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGI 226
           +W SMISGY R+ E +   + LF  MP+++++SW                          
Sbjct: 223 SWNSMISGYARSEEGLRVAWELFEEMPKRDLISW-------------------------- 256

Query: 227 CDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAY 286
                       NSMI+G ++ G++E A +LF+ +P RD +SW +M+DGY  +G++  A 
Sbjct: 257 ------------NSMIDGCVKCGKMENAHHLFNQMPKRDVVSWANMVDGYAKLGEIDIAR 304

Query: 287 YLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHG-VPPLNATFSVLFGAAGAT 345
            LF  MP+RD ++  AM++G VQN   +EA   F +M +   + P NAT  +   A    
Sbjct: 305 GLFDEMPERDVISCNAMMAGYVQNGHLMEALNFFHDMLSRKELFPDNATLLITLSAIAQL 364

Query: 346 ANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMV 405
            + D G  +HC +          L   LI MYAKCG IDNA ++F ++  + +  WN+++
Sbjct: 365 GHFDEGVALHCYIEDNGFSLSEKLGVALIDMYAKCGSIDNALSVFEDIDDKSIDHWNAII 424

Query: 406 MGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKI 465
            G + HGL     ++F  M +    P+ +TF+G+L+AC+HAGLV  G   F  M  V+K+
Sbjct: 425 GGLAIHGLGEVAFELFMEMEKLFVKPDDITFIGVLNACNHAGLVKEGLMCFELMRRVHKV 484

Query: 466 QPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAA 525
           +P  +HY  M+++LGRAG ++EA++FV ++P EP+  +W  LL AC   E N  I E  A
Sbjct: 485 EPKLQHYGCMVDILGRAGHVEEAKKFVEKMPIEPNDVVWRTLLSACRNHE-NFTIGEPVA 543

Query: 526 KRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMF 585
           K L+ +D  N  ++V+L NIYA  G   + +++RM M  + ++K+PGCS +   G +  F
Sbjct: 544 KHLISVDSYNPSSYVLLSNIYAGFGMWNDVYRIRMMMKQRDLKKIPGCSQIELEGNVHEF 603

Query: 586 LSGDKIPAQVAEI 598
              DK   QV EI
Sbjct: 604 FVRDKSHPQVREI 616


>gi|357138408|ref|XP_003570784.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Brachypodium distachyon]
          Length = 750

 Score =  325 bits (833), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 191/601 (31%), Positives = 319/601 (53%), Gaps = 23/601 (3%)

Query: 6   HPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLF 65
           HP    + L + +T Y+  G +  A+ +F  MP RN+V+ N++LS   + G + +  RLF
Sbjct: 42  HPSPTYL-LNTLLTAYASSGLLPHARRVFDAMPGRNLVTGNSLLSALARAGLVRDMERLF 100

Query: 66  EEMPERNVVSWTAMICGLADAGRVCEARKLFEEM--------PERNVVSWNSMVVGLIRN 117
             +P+R+ VS+ A++ G + AG    A   +  +        P R  +S   MV   +  
Sbjct: 101 TSLPQRDAVSYNALLAGFSRAGAHARAAGAYVALLRDEAGVRPSRITMSGVVMVASAL-- 158

Query: 118 GELNEARKVFNSMPI----KNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMI 173
           G+    R+V   +          + + ++  Y +   +G+A  +F+EME +NVV   +MI
Sbjct: 159 GDRALGRQVHCQILRLGFGAYAFTGSPLVDMYAKVGPIGDARRVFDEMEGKNVVMCNTMI 218

Query: 174 SGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNC 233
           +G  R   V E   LF  +  ++ ++WT M+ G   NG   E+L +F  M+     G   
Sbjct: 219 TGLLRCKMVAEARALFEAIEERDSITWTTMVTGLTQNGLESEALDVFRRMRA---EGVGI 275

Query: 234 NVQSCNSMINGYIRFGRLEEAQNLFDTVP---VRDEI-SWTSMIDGYLSVGQVSNAYYLF 289
           +  +  S++        LEE + +   +      D +   ++++D Y     V  A  +F
Sbjct: 276 DQYTFGSILTACGALAALEEGKQIHAYITRTCYEDNVFVGSALVDMYSKCRSVRLAEAVF 335

Query: 290 HNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANID 349
             M  ++ ++WTAMI G  QN    EA  +F EM+  G+ P + T   +  +    A+++
Sbjct: 336 RRMMWKNIISWTAMIVGYGQNGCGEEAVRVFSEMQRDGIKPDDFTLGSVISSCANLASLE 395

Query: 350 LGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFS 409
            G Q HC+ + +     + + N L+++Y KCG I++A+ +F  M   D VSW ++VMG++
Sbjct: 396 EGAQFHCLALVSGLRPYVTVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVMGYA 455

Query: 410 HHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGP 469
             G A ET+ +FE ML  G  P+ VTF+G+LSACS +GLV +G   F++M   + I P  
Sbjct: 456 QFGKAKETIDLFEKMLSKGVKPDGVTFIGVLSACSRSGLVDKGRSYFHSMQQDHDIVPLD 515

Query: 470 EHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLL 529
           +HY  MI+L  R+G +K+AEEF+ ++P  PD   W  LL AC    G+ EI + AA+ LL
Sbjct: 516 DHYTCMIDLYSRSGWLKQAEEFIKQMPRCPDAFGWATLLSACRL-RGDMEIGKWAAENLL 574

Query: 530 ELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGD 589
           +LDP N  ++V+LC+++A+ G   +  KLR  M  + V+K PGCSW+     + +F + D
Sbjct: 575 KLDPQNPASYVLLCSMHASKGEWNDVAKLRRGMRDRQVKKEPGCSWIKYKNKVHIFSADD 634

Query: 590 K 590
           +
Sbjct: 635 Q 635



 Score = 42.7 bits (99), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 25/96 (26%), Positives = 52/96 (54%), Gaps = 5/96 (5%)

Query: 350 LGRQIHCVLMKT-ESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGF 408
           L   +H ++++T    S   L N L++ YA  G++ +A  +F  M  R+LV+ NS++   
Sbjct: 28  LTAAVHALILRTLPHPSPTYLLNTLLTAYASSGLLPHARRVFDAMPGRNLVTGNSLLSAL 87

Query: 409 SHHGLANETLKVFESMLESGTHPNSVTFLGILSACS 444
           +  GL  +  ++F S+ +     ++V++  +L+  S
Sbjct: 88  ARAGLVRDMERLFTSLPQR----DAVSYNALLAGFS 119


>gi|356544234|ref|XP_003540559.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09040,
           mitochondrial-like [Glycine max]
          Length = 916

 Score =  325 bits (832), Expect = 6e-86,   Method: Compositional matrix adjust.
 Identities = 204/635 (32%), Positives = 332/635 (52%), Gaps = 53/635 (8%)

Query: 15  TSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNV- 73
           +S I  Y K    D+A+ +F  + Q+N++ +NAML  + QNG LS    LF +M    + 
Sbjct: 256 SSLINMYGKCQMPDDARQVFDAISQKNMIVWNAMLGVYSQNGFLSNVMELFLDMISCGIH 315

Query: 74  ---VSWTAMICGLADAGRVCEARKLFEEMPER----NVVSWNSMVVGLIRNGELNEARKV 126
               ++T+++   A    +   R+L   + ++    N+   N+++    + G L EA K 
Sbjct: 316 PDEFTYTSILSTCACFEYLEVGRQLHSAIIKKRFTSNLFVNNALIDMYAKAGALKEAGKH 375

Query: 127 FNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEM------------------------- 161
           F  M  ++ ISWNA+I GYV+  +   A  LF  M                         
Sbjct: 376 FEHMTYRDHISWNAIIVGYVQEEVEAGAFSLFRRMILDGIVPDEVSLASILSACGNIKVL 435

Query: 162 --------------EERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGF 207
                          E N+   +S+I  Y + G++++ +  +  MP ++VVS  A+I G+
Sbjct: 436 EAGQQFHCLSVKLGLETNLFAGSSLIDMYSKCGDIKDAHKTYSSMPERSVVSVNALIAGY 495

Query: 208 AWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIR--FGRLEEAQNLFDTVPVRD 265
           A     KES+ L  EM+ +    +     S   +  G  +   G       +   +    
Sbjct: 496 ALKNT-KESINLLHEMQILGLKPSEITFASLIDVCKGSAKVILGLQIHCAIVKRGLLCGS 554

Query: 266 EISWTSMIDGYLSVGQVSNAYYLFHNMPD-RDAVAWTAMISGLVQNELFVEATYLFMEMR 324
           E   TS++  Y+   ++++A  LF      +  V WTA+ISG +QNE    A  L+ EMR
Sbjct: 555 EFLGTSLLGMYMDSQRLADANILFSEFSSLKSIVMWTALISGHIQNECSDVALNLYREMR 614

Query: 325 AHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVID 384
            + + P  ATF  +  A    +++  GR+IH ++  T  + D +  + L+ MYAKCG + 
Sbjct: 615 DNNISPDQATFVTVLQACALLSSLHDGREIHSLIFHTGFDLDELTSSALVDMYAKCGDVK 674

Query: 385 NAYNIFSNMVSR-DLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSAC 443
           ++  +F  + ++ D++SWNSM++GF+ +G A   LKVF+ M +S   P+ VTFLG+L+AC
Sbjct: 675 SSVQVFEELATKKDVISWNSMIVGFAKNGYAKCALKVFDEMTQSCITPDDVTFLGVLTAC 734

Query: 444 SHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRI 503
           SHAG V  G ++F+ M + Y I+P  +HY  M++LLGR G +KEAEEF+ +L  EP+  I
Sbjct: 735 SHAGWVYEGRQIFDVMVNYYGIEPRVDHYACMVDLLGRWGFLKEAEEFIDKLEVEPNAMI 794

Query: 504 WGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMG 563
           W  LLGAC    G+ +  + AAK+L+EL+P ++  +V+L N+YAASG   E   LR  M 
Sbjct: 795 WANLLGACRI-HGDEKRGQRAAKKLIELEPQSSSPYVLLSNMYAASGNWDEARSLRRTMI 853

Query: 564 LKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
            K ++K+PGCSW++      +F++GD   +   EI
Sbjct: 854 KKDIQKIPGCSWIVVGQETNLFVAGDISHSSYDEI 888



 Score =  171 bits (433), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 122/463 (26%), Positives = 218/463 (47%), Gaps = 54/463 (11%)

Query: 47  AMLSGFLQNGRLSEARRLFEE--MPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNV 104
           A++  + +   L+ AR +F     P  + VSWTA+I G   AG   EA  +F++M    V
Sbjct: 87  ALIHLYAKCNSLTCARTIFASAPFPHLHTVSWTALISGYVQAGLPHEALHIFDKMRNSAV 146

Query: 105 VSWNSMVVGL---IRNGELNEARKVFNSM--PIKNVISWNAMIAGYVECCMMGEAIVLFE 159
               ++V  L   I  G+L++A ++F  M  PI+NV++WN MI+G+ +     EA+  F 
Sbjct: 147 PDQVALVTVLNAYISLGKLDDACQLFQQMPIPIRNVVAWNVMISGHAKTAHYEEALAFFH 206

Query: 160 EME---------------------------------------ERNVVTWTSMISGYCRAG 180
           +M                                        E ++   +S+I+ Y +  
Sbjct: 207 QMSKHGVKSSRSTLASVLSAIASLAALNHGLLVHAHAIKQGFESSIYVASSLINMYGKCQ 266

Query: 181 EVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNS 240
             ++   +F  + +KN++ W AM+G ++ NGF    + LF++M      G + +  +  S
Sbjct: 267 MPDDARQVFDAISQKNMIVWNAMLGVYSQNGFLSNVMELFLDMISC---GIHPDEFTYTS 323

Query: 241 MINGYIRFGRLEEAQNLFDTVPVRDEIS----WTSMIDGYLSVGQVSNAYYLFHNMPDRD 296
           +++    F  LE  + L   +  +   S      ++ID Y   G +  A   F +M  RD
Sbjct: 324 ILSTCACFEYLEVGRQLHSAIIKKRFTSNLFVNNALIDMYAKAGALKEAGKHFEHMTYRD 383

Query: 297 AVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHC 356
            ++W A+I G VQ E+   A  LF  M   G+ P   + + +  A G    ++ G+Q HC
Sbjct: 384 HISWNAIIVGYVQEEVEAGAFSLFRRMILDGIVPDEVSLASILSACGNIKVLEAGQQFHC 443

Query: 357 VLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANE 416
           + +K   E++L   + LI MY+KCG I +A+  +S+M  R +VS N+++ G++      E
Sbjct: 444 LSVKLGLETNLFAGSSLIDMYSKCGDIKDAHKTYSSMPERSVVSVNALIAGYALKN-TKE 502

Query: 417 TLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAM 459
           ++ +   M   G  P+ +TF  ++  C  +  V  G ++  A+
Sbjct: 503 SINLLHEMQILGLKPSEITFASLIDVCKGSAKVILGLQIHCAI 545



 Score =  159 bits (402), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 104/390 (26%), Positives = 190/390 (48%), Gaps = 19/390 (4%)

Query: 120 LNEARKVFNSMPIKNV--ISWNAMIAGYVECCMMGEAIVLFEEMEERNV---VTWTSMIS 174
           L  AR +F S P  ++  +SW A+I+GYV+  +  EA+ +F++M    V   V   ++++
Sbjct: 98  LTCARTIFASAPFPHLHTVSWTALISGYVQAGLPHEALHIFDKMRNSAVPDQVALVTVLN 157

Query: 175 GYCRAGEVEEGYCLFRRMPR--KNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNN 232
            Y   G++++   LF++MP   +NVV+W  MI G A    ++E+L  F +M       + 
Sbjct: 158 AYISLGKLDDACQLFQQMPIPIRNVVAWNVMISGHAKTAHYEEALAFFHQMSKHGVKSSR 217

Query: 233 CNVQSCNSMINGY--IRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFH 290
             + S  S I     +  G L  A  +         ++ +S+I+ Y       +A  +F 
Sbjct: 218 STLASVLSAIASLAALNHGLLVHAHAIKQGFESSIYVA-SSLINMYGKCQMPDDARQVFD 276

Query: 291 NMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDL 350
            +  ++ + W AM+    QN        LF++M + G+ P   T++ +         +++
Sbjct: 277 AISQKNMIVWNAMLGVYSQNGFLSNVMELFLDMISCGIHPDEFTYTSILSTCACFEYLEV 336

Query: 351 GRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSH 410
           GRQ+H  ++K    S+L + N LI MYAK G +  A   F +M  RD +SWN++++G+  
Sbjct: 337 GRQLHSAIIKKRFTSNLFVNNALIDMYAKAGALKEAGKHFEHMTYRDHISWNAIIVGYVQ 396

Query: 411 HGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPE 470
             +      +F  M+  G  P+ V+   ILSAC +  ++  G +     F    ++ G E
Sbjct: 397 EEVEAGAFSLFRRMILDGIVPDEVSLASILSACGNIKVLEAGQQ-----FHCLSVKLGLE 451

Query: 471 HYV----SMINLLGRAGKIKEAEEFVLRLP 496
             +    S+I++  + G IK+A +    +P
Sbjct: 452 TNLFAGSSLIDMYSKCGDIKDAHKTYSSMP 481



 Score =  150 bits (378), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 92/321 (28%), Positives = 172/321 (53%), Gaps = 14/321 (4%)

Query: 237 SCNSMINGYIRFGRLEEAQNLFDTV---PVRDEISWTSMIDGYLSVGQVSNAYYLFHNMP 293
           S  ++I+GY++ G   EA ++FD +    V D+++  ++++ Y+S+G++ +A  LF  MP
Sbjct: 117 SWTALISGYVQAGLPHEALHIFDKMRNSAVPDQVALVTVLNAYISLGKLDDACQLFQQMP 176

Query: 294 D--RDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLG 351
              R+ VAW  MISG  +   + EA   F +M  HGV    +T + +  A  + A ++ G
Sbjct: 177 IPIRNVVAWNVMISGHAKTAHYEEALAFFHQMSKHGVKSSRSTLASVLSAIASLAALNHG 236

Query: 352 RQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHH 411
             +H   +K   ES + + + LI+MY KC + D+A  +F  +  ++++ WN+M+  +S +
Sbjct: 237 LLVHAHAIKQGFESSIYVASSLINMYGKCQMPDDARQVFDAISQKNMIVWNAMLGVYSQN 296

Query: 412 GLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEH 471
           G  +  +++F  M+  G HP+  T+  ILS C+    +  G +L +A   + K +     
Sbjct: 297 GFLSNVMELFLDMISCGIHPDEFTYTSILSTCACFEYLEVGRQLHSA---IIKKRFTSNL 353

Query: 472 YV--SMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLL 529
           +V  ++I++  +AG +KEA +    + +  DH  W A++   G+ +   E    +  R +
Sbjct: 354 FVNNALIDMYAKAGALKEAGKHFEHMTYR-DHISWNAII--VGYVQEEVEAGAFSLFRRM 410

Query: 530 ELDPLNAPAHVVLCNIYAASG 550
            LD +  P  V L +I +A G
Sbjct: 411 ILDGI-VPDEVSLASILSACG 430



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 136/569 (23%), Positives = 250/569 (43%), Gaps = 78/569 (13%)

Query: 4   RNHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQ--RNVVSYNAMLSGFLQNGRLSEA 61
           RN      V L + +  Y   G +D+A  LFQ MP   RNVV++N M+SG  +     EA
Sbjct: 142 RNSAVPDQVALVTVLNAYISLGKLDDACQLFQQMPIPIRNVVAWNVMISGHAKTAHYEEA 201

Query: 62  RRLFEEMPERNVVSWTAMICGLADA---------GRVCEARKLFEEMPERNVVSWNSMVV 112
              F +M +  V S  + +  +  A         G +  A  + ++  E ++   +S++ 
Sbjct: 202 LAFFHQMSKHGVKSSRSTLASVLSAIASLAALNHGLLVHAHAI-KQGFESSIYVASSLIN 260

Query: 113 GLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNV----VT 168
              +    ++AR+VF+++  KN+I WNAM+  Y +   +   + LF +M    +     T
Sbjct: 261 MYGKCQMPDDARQVFDAISQKNMIVWNAMLGVYSQNGFLSNVMELFLDMISCGIHPDEFT 320

Query: 169 WTSMISG-----------------------------------YCRAGEVEEGYCLFRRMP 193
           +TS++S                                    Y +AG ++E    F  M 
Sbjct: 321 YTSILSTCACFEYLEVGRQLHSAIIKKRFTSNLFVNNALIDMYAKAGALKEAGKHFEHMT 380

Query: 194 RKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEE 253
            ++ +SW A+I G+        +  LF  M  I D G   +  S  S+++       LE 
Sbjct: 381 YRDHISWNAIIVGYVQEEVEAGAFSLFRRM--ILD-GIVPDEVSLASILSACGNIKVLEA 437

Query: 254 AQNLFDTVPVR-----DEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLV 308
            Q  F  + V+     +  + +S+ID Y   G + +A+  + +MP+R  V+  A+I+G  
Sbjct: 438 GQQ-FHCLSVKLGLETNLFAGSSLIDMYSKCGDIKDAHKTYSSMPERSVVSVNALIAGYA 496

Query: 309 QNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMK----TESE 364
                 E+  L  EM+  G+ P   TF+ L      +A + LG QIHC ++K      SE
Sbjct: 497 LKNT-KESINLLHEMQILGLKPSEITFASLIDVCKGSAKVILGLQIHCAIVKRGLLCGSE 555

Query: 365 SDLILENCLISMYAKCGVIDNAYNIFSNMVS-RDLVSWNSMVMGFSHHGLANETLKVFES 423
               L   L+ MY     + +A  +FS   S + +V W +++ G   +  ++  L ++  
Sbjct: 556 ---FLGTSLLGMYMDSQRLADANILFSEFSSLKSIVMWTALISGHIQNECSDVALNLYRE 612

Query: 424 MLESGTHPNSVTFLGILSACSHAGLVSRGWE----LFNAMFDVYKIQPGPEHYVSMINLL 479
           M ++   P+  TF+ +L AC+    +  G E    +F+  FD+ ++        +++++ 
Sbjct: 613 MRDNNISPDQATFVTVLQACALLSSLHDGREIHSLIFHTGFDLDELTSS-----ALVDMY 667

Query: 480 GRAGKIKEAEEFVLRLPFEPDHRIWGALL 508
            + G +K + +    L  + D   W +++
Sbjct: 668 AKCGDVKSSVQVFEELATKKDVISWNSMI 696



 Score = 72.4 bits (176), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 43/135 (31%), Positives = 67/135 (49%), Gaps = 3/135 (2%)

Query: 327 GVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNA 386
           G  P   TF+V   A     N+ LGR +H  ++K+  ES    +  LI +YAKC  +  A
Sbjct: 42  GHSPDQFTFAVTLSACAKLQNLHLGRAVHSCVIKSGLESTSFCQGALIHLYAKCNSLTCA 101

Query: 387 YNIFSNMVSRDL--VSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACS 444
             IF++     L  VSW +++ G+   GL +E L +F+ M  S   P+ V  + +L+A  
Sbjct: 102 RTIFASAPFPHLHTVSWTALISGYVQAGLPHEALHIFDKMRNSAV-PDQVALVTVLNAYI 160

Query: 445 HAGLVSRGWELFNAM 459
             G +    +LF  M
Sbjct: 161 SLGKLDDACQLFQQM 175


>gi|357516905|ref|XP_003628741.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355522763|gb|AET03217.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 758

 Score =  325 bits (832), Expect = 6e-86,   Method: Compositional matrix adjust.
 Identities = 191/527 (36%), Positives = 280/527 (53%), Gaps = 31/527 (5%)

Query: 88  RVCEARKLFEEMPERNVVSWNSMVVGLIRNG----------ELNEARKVFNSMPIKNVIS 137
           R+  ARKLF+++P+ N  +WN+M  G ++NG          ELN    + N      +I 
Sbjct: 59  RIHHARKLFDKIPQPNTATWNAMFRGYLQNGHHRDTVVLFGELNRIAGMPNCFTFPMIIK 118

Query: 138 WNAMIAGY-----VECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRM 192
               + G      V CC             + N    TS+I  Y + G VE+ Y +F  M
Sbjct: 119 SCGKLEGVREGEEVHCCATKHGF-------KSNSFVATSLIDMYSKKGCVEDAYKVFGEM 171

Query: 193 PRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLE 252
             +NVV WTA+I G+   G       LF       D     +V   + +I+GYI    + 
Sbjct: 172 HERNVVVWTAIINGYILCGDVVSGRRLF-------DLAPERDVVMWSVLISGYIESKNMA 224

Query: 253 EAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNEL 312
            A+ LFD +P RD +SW +M++GY   G+V     +F  MP+R+  +W  +I G V+N L
Sbjct: 225 AARELFDKMPNRDTMSWNAMLNGYAVNGEVEMFEKVFDEMPERNVFSWNGLIGGYVKNGL 284

Query: 313 FVEATYLFMEMRAHG-VPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILEN 371
           F E    F  M   G V P + T   +  A      +D+G+ +H        + +L + N
Sbjct: 285 FSETLESFKRMLVEGHVIPNDFTLVAVLSACSRLGALDMGKWVHVYAESIGYKGNLFVGN 344

Query: 372 CLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHP 431
            LI MYAKCGVI+NA  +F+ +  +D++SWN+++ G + HG A + L +F+ M   G  P
Sbjct: 345 VLIDMYAKCGVIENAVVVFNCLDRKDIISWNTIINGLAIHGHAPDALGMFDRMKSEGEEP 404

Query: 432 NSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEF 491
           + VTF+GILSAC+H GLV  G+  F +M D Y I P  EHY  M++LLGRAG + +A  F
Sbjct: 405 DGVTFVGILSACTHMGLVKDGFLYFKSMVDHYSIVPQIEHYGCMVDLLGRAGLLDQALNF 464

Query: 492 VLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGR 551
           + ++P EPD  IW ALLGAC   + N EIAE A +RL+EL+P N    V++ NIY   GR
Sbjct: 465 IRKMPIEPDAVIWAALLGACRLYK-NVEIAELALQRLIELEPNNPANFVMVSNIYKDLGR 523

Query: 552 HVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
             +  +L++ M   G RK+PGCS +  N  +  F S D+  ++   I
Sbjct: 524 SEDVARLKIAMRDTGFRKLPGCSVIECNDSVVEFYSLDERHSETESI 570



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 116/436 (26%), Positives = 203/436 (46%), Gaps = 53/436 (12%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEE------MP-- 69
           IT  S+   I  A+ LF  +PQ N  ++NAM  G+LQNG   +   LF E      MP  
Sbjct: 51  ITTCSRFKRIHHARKLFDKIPQPNTATWNAMFRGYLQNGHHRDTVVLFGELNRIAGMPNC 110

Query: 70  -------------------------------ERNVVSWTAMICGLADAGRVCEARKLFEE 98
                                          + N    T++I   +  G V +A K+F E
Sbjct: 111 FTFPMIIKSCGKLEGVREGEEVHCCATKHGFKSNSFVATSLIDMYSKKGCVEDAYKVFGE 170

Query: 99  MPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLF 158
           M ERNVV W +++ G I  G++   R++F+  P ++V+ W+ +I+GY+E   M  A  LF
Sbjct: 171 MHERNVVVWTAIINGYILCGDVVSGRRLFDLAPERDVVMWSVLISGYIESKNMAAARELF 230

Query: 159 EEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLL 218
           ++M  R+ ++W +M++GY   GEVE    +F  MP +NV SW  +IGG+  NG   E+L 
Sbjct: 231 DKMPNRDTMSWNAMLNGYAVNGEVEMFEKVFDEMPERNVFSWNGLIGGYVKNGLFSETLE 290

Query: 219 LFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLF---DTVPVRDEI-SWTSMID 274
            F  M  + +     N  +  ++++   R G L+  + +    +++  +  +     +ID
Sbjct: 291 SFKRM--LVEGHVIPNDFTLVAVLSACSRLGALDMGKWVHVYAESIGYKGNLFVGNVLID 348

Query: 275 GYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNAT 334
            Y   G + NA  +F+ +  +D ++W  +I+GL  +    +A  +F  M++ G  P   T
Sbjct: 349 MYAKCGVIENAVVVFNCLDRKDIISWNTIINGLAIHGHAPDALGMFDRMKSEGEEPDGVT 408

Query: 335 FSVLFGAAGATANIDLGRQIHCVLMKTESESDLILE----NCLISMYAKCGVIDNAYNIF 390
           F    G   A  ++ L +              ++ +     C++ +  + G++D A N  
Sbjct: 409 F---VGILSACTHMGLVKDGFLYFKSMVDHYSIVPQIEHYGCMVDLLGRAGLLDQALNFI 465

Query: 391 SNM-VSRDLVSWNSMV 405
             M +  D V W +++
Sbjct: 466 RKMPIEPDAVIWAALL 481



 Score =  152 bits (384), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 97/336 (28%), Positives = 164/336 (48%), Gaps = 49/336 (14%)

Query: 15  TSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVV 74
           TS I  YSK+G +++A  +F  M +RNVV + A+++G++  G +   RRLF+  PER+VV
Sbjct: 149 TSLIDMYSKKGCVEDAYKVFGEMHERNVVVWTAIINGYILCGDVVSGRRLFDLAPERDVV 208

Query: 75  SWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKN 134
            W+ +I G  ++  +  AR+LF++MP R+ +SWN+M+ G   NGE+    KVF+ MP +N
Sbjct: 209 MWSVLISGYIESKNMAAARELFDKMPNRDTMSWNAMLNGYAVNGEVEMFEKVFDEMPERN 268

Query: 135 VISWNAMIAGYVECCMMGEAIVLFEEM--------------------------------- 161
           V SWN +I GYV+  +  E +  F+ M                                 
Sbjct: 269 VFSWNGLIGGYVKNGLFSETLESFKRMLVEGHVIPNDFTLVAVLSACSRLGALDMGKWVH 328

Query: 162 -------EERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHK 214
                   + N+     +I  Y + G +E    +F  + RK+++SW  +I G A +G   
Sbjct: 329 VYAESIGYKGNLFVGNVLIDMYAKCGVIENAVVVFNCLDRKDIISWNTIINGLAIHGHAP 388

Query: 215 ESLLLFIEMKGICDNGNNCN----VQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEIS-W 269
           ++L +F  MK   +  +       + +C  M  G ++ G L   +++ D   +  +I  +
Sbjct: 389 DALGMFDRMKSEGEEPDGVTFVGILSACTHM--GLVKDGFL-YFKSMVDHYSIVPQIEHY 445

Query: 270 TSMIDGYLSVGQVSNAYYLFHNMP-DRDAVAWTAMI 304
             M+D     G +  A      MP + DAV W A++
Sbjct: 446 GCMVDLLGRAGLLDQALNFIRKMPIEPDAVIWAALL 481


>gi|326494876|dbj|BAJ94557.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 783

 Score =  325 bits (832), Expect = 6e-86,   Method: Compositional matrix adjust.
 Identities = 210/639 (32%), Positives = 312/639 (48%), Gaps = 109/639 (17%)

Query: 15  TSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEM------ 68
           T+ +  Y+K G ID A ++F  +P RN V++ A+++G+ Q G+   A  LF  M      
Sbjct: 176 TALVNLYAKAGRIDAAMSVFDALPARNPVTWTAVITGYSQAGQAGVALELFGRMGLDGVR 235

Query: 69  PERNVVSWTAMIC---GLADAGR------------------------VCE------ARKL 95
           P+R V++  A  C   G  + GR                         C+      AR+L
Sbjct: 236 PDRFVLASAASACSGLGFVEGGRQIHGYAYRTAAESDASVVNALIDLYCKCSRLLLARRL 295

Query: 96  FEEMPERNVVSWNSMVVGLIRNGELNEARK-------------VFNSMPIKNVIS----- 137
           F+ M  RN+VSW +M+ G ++N    EA               VF    I N        
Sbjct: 296 FDSMENRNLVSWTTMIAGYMQNSLDTEAMSMFWQLSQAGWQPDVFACTSILNSCGSLAAI 355

Query: 138 W---------------------NAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGY 176
           W                     NA+I  Y +C  + EA  +FE + E + +++ +MI GY
Sbjct: 356 WQGRQVHAHVIKADLESDEYVKNALIDMYAKCEHLTEARAVFEALAEDDAISYNAMIEGY 415

Query: 177 CRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQ 236
            R G++     +F +M   ++                K SLL F+ + G+  + ++  + 
Sbjct: 416 ARLGDLTGAVEIFGKMRYCSL----------------KPSLLTFVSLLGVSSSRSDLEL- 458

Query: 237 SCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRD 296
             +  I+G I    ++   +L       D  + +++ID Y     V +A  +F  M +RD
Sbjct: 459 --SKQIHGLI----VKSGTSL-------DLYAGSALIDVYSKFSLVDDAKLVFSLMQNRD 505

Query: 297 AVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHC 356
            V W AMI GL QNE   EA  LF  +R  G+ P   TF  L   A   A+I  G+Q H 
Sbjct: 506 MVIWNAMIFGLAQNERGEEAVKLFARLRVSGLTPNEFTFVALVTVASTLASIFHGQQFHA 565

Query: 357 VLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANE 416
            ++K  ++SD  + N LI MYAKCG I+    +F + + +D++ WNSM+  ++ HG A E
Sbjct: 566 QIIKAGADSDPHISNALIDMYAKCGFIEEGRLLFESTLGKDVICWNSMISTYAQHGHAEE 625

Query: 417 TLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMI 476
            L VF  M  +G  PN VTF+ +LSAC+HAGLV  G   FN+M   Y ++PG EHY S++
Sbjct: 626 ALHVFGMMEGAGVEPNYVTFVSVLSACAHAGLVDEGLHHFNSMKTKYAVEPGTEHYASVV 685

Query: 477 NLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNA 536
           NL GR+GK+  A+EF+ R+P EP   IW +LL AC    GN EI  +A +  L  DP ++
Sbjct: 686 NLFGRSGKLHAAKEFIERMPIEPVATIWRSLLSACHLF-GNVEIGRYATEMALLADPADS 744

Query: 537 PAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSW 575
              V++ NIYA+ G   +  KLR  M   GV K PG SW
Sbjct: 745 GPSVLMSNIYASKGLWADAQKLRQGMDCAGVVKEPGYSW 783



 Score =  192 bits (488), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 144/564 (25%), Positives = 253/564 (44%), Gaps = 71/564 (12%)

Query: 21  YSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMP----------- 69
           YSK G + +A+ LF  MP RN+VS+ + +S + Q+GR  +A  LF   P           
Sbjct: 75  YSKLGRLGDARRLFDSMPSRNLVSWGSAISMYAQHGREDDALLLFAAFPSAGAASPDGEP 134

Query: 70  ----------------------------------ERNVVSWTAMICGLADAGRVCEARKL 95
                                             + NV   TA++   A AGR+  A  +
Sbjct: 135 PNEFLLASALRACAQSRAARFGEQVHGVAAKLGLDANVFVGTALVNLYAKAGRIDAAMSV 194

Query: 96  FEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCM----- 150
           F+ +P RN V+W +++ G  + G+   A ++F  M +  V     ++A     C      
Sbjct: 195 FDALPARNPVTWTAVITGYSQAGQAGVALELFGRMGLDGVRPDRFVLASAASACSGLGFV 254

Query: 151 -MGEAI--VLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGF 207
             G  I    +    E +     ++I  YC+   +     LF  M  +N+VSWT MI G+
Sbjct: 255 EGGRQIHGYAYRTAAESDASVVNALIDLYCKCSRLLLARRLFDSMENRNLVSWTTMIAGY 314

Query: 208 AWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPV---- 263
             N    E++ +F ++      G   +V +C S++N       + + + +   V      
Sbjct: 315 MQNSLDTEAMSMFWQLS---QAGWQPDVFACTSILNSCGSLAAIWQGRQVHAHVIKADLE 371

Query: 264 RDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEM 323
            DE    ++ID Y     ++ A  +F  + + DA+++ AMI G  +      A  +F +M
Sbjct: 372 SDEYVKNALIDMYAKCEHLTEARAVFEALAEDDAISYNAMIEGYARLGDLTGAVEIFGKM 431

Query: 324 RAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVI 383
           R   + P   TF  L G + + ++++L +QIH +++K+ +  DL   + LI +Y+K  ++
Sbjct: 432 RYCSLKPSLLTFVSLLGVSSSRSDLELSKQIHGLIVKSGTSLDLYAGSALIDVYSKFSLV 491

Query: 384 DNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSAC 443
           D+A  +FS M +RD+V WN+M+ G + +    E +K+F  +  SG  PN  TF+ +++  
Sbjct: 492 DDAKLVFSLMQNRDMVIWNAMIFGLAQNERGEEAVKLFARLRVSGLTPNEFTFVALVTVA 551

Query: 444 SHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFE----P 499
           S    +  G + F+A          P    ++I++  + G I+E      RL FE     
Sbjct: 552 STLASIFHGQQ-FHAQIIKAGADSDPHISNALIDMYAKCGFIEEG-----RLLFESTLGK 605

Query: 500 DHRIWGALLGACGFCEGNAEIAEH 523
           D   W +++       G+AE A H
Sbjct: 606 DVICWNSMISTYA-QHGHAEEALH 628



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 121/442 (27%), Positives = 207/442 (46%), Gaps = 40/442 (9%)

Query: 62  RRLFEEMPERNVVSW--------TAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVG 113
           RR+      R VVS           ++ G +  GR+ +AR+LF+ MP RN+VSW S +  
Sbjct: 46  RRVLPPAHARAVVSGLLPDLFLANLLLRGYSKLGRLGDARRLFDSMPSRNLVSWGSAISM 105

Query: 114 LIRNGELNEARKVFNSMPIKNVISWNA------MIAGYVECCMMGEAIVLFEEME----- 162
             ++G  ++A  +F + P     S +       ++A  +  C    A    E++      
Sbjct: 106 YAQHGREDDALLLFAAFPSAGAASPDGEPPNEFLLASALRACAQSRAARFGEQVHGVAAK 165

Query: 163 ---ERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLL 219
              + NV   T++++ Y +AG ++    +F  +P +N V+WTA+I G++  G    +L L
Sbjct: 166 LGLDANVFVGTALVNLYAKAGRIDAAMSVFDALPARNPVTWTAVITGYSQAGQAGVALEL 225

Query: 220 FIEMKGICDNGNNCNVQSCNSMIN--GYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYL 277
           F  M       +   + S  S  +  G++  GR       + T    D     ++ID Y 
Sbjct: 226 FGRMGLDGVRPDRFVLASAASACSGLGFVEGGRQIHGYA-YRTAAESDASVVNALIDLYC 284

Query: 278 SVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSV 337
              ++  A  LF +M +R+ V+WT MI+G +QN L  EA  +F ++   G  P     + 
Sbjct: 285 KCSRLLLARRLFDSMENRNLVSWTTMIAGYMQNSLDTEAMSMFWQLSQAGWQPDVFACTS 344

Query: 338 LFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRD 397
           +  + G+ A I  GRQ+H  ++K + ESD  ++N LI MYAKC  +  A  +F  +   D
Sbjct: 345 ILNSCGSLAAIWQGRQVHAHVIKADLESDEYVKNALIDMYAKCEHLTEARAVFEALAEDD 404

Query: 398 LVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACS-----------HA 446
            +S+N+M+ G++  G     +++F  M      P+ +TF+ +L   S           H 
Sbjct: 405 AISYNAMIEGYARLGDLTGAVEIFGKMRYCSLKPSLLTFVSLLGVSSSRSDLELSKQIHG 464

Query: 447 GLVSRGWEL----FNAMFDVYK 464
            +V  G  L     +A+ DVY 
Sbjct: 465 LIVKSGTSLDLYAGSALIDVYS 486



 Score = 95.5 bits (236), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 59/214 (27%), Positives = 101/214 (47%), Gaps = 11/214 (5%)

Query: 272 MIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGV--- 328
           ++ GY  +G++ +A  LF +MP R+ V+W + IS   Q+    +A  LF    + G    
Sbjct: 71  LLRGYSKLGRLGDARRLFDSMPSRNLVSWGSAISMYAQHGREDDALLLFAAFPSAGAASP 130

Query: 329 ---PPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDN 385
              PP     +    A   +     G Q+H V  K   ++++ +   L+++YAK G ID 
Sbjct: 131 DGEPPNEFLLASALRACAQSRAARFGEQVHGVAAKLGLDANVFVGTALVNLYAKAGRIDA 190

Query: 386 AYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSH 445
           A ++F  + +R+ V+W +++ G+S  G A   L++F  M   G  P+        SACS 
Sbjct: 191 AMSVFDALPARNPVTWTAVITGYSQAGQAGVALELFGRMGLDGVRPDRFVLASAASACSG 250

Query: 446 AGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLL 479
            G V  G ++       Y  +   E   S++N L
Sbjct: 251 LGFVEGGRQIHG-----YAYRTAAESDASVVNAL 279



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 54/209 (25%), Positives = 87/209 (41%), Gaps = 42/209 (20%)

Query: 366 DLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESML 425
           DL L N L+  Y+K G + +A  +F +M SR+LVSW S +  ++ HG  ++ L +F +  
Sbjct: 64  DLFLANLLLRGYSKLGRLGDARRLFDSMPSRNLVSWGSAISMYAQHGREDDALLLFAAFP 123

Query: 426 ESGTH------PNSVTFLGILSACSHA----------GLVSR---------GWELFN--- 457
            +G        PN       L AC+ +          G+ ++         G  L N   
Sbjct: 124 SAGAASPDGEPPNEFLLASALRACAQSRAARFGEQVHGVAAKLGLDANVFVGTALVNLYA 183

Query: 458 ------AMFDVYKIQPG--PEHYVSMINLLGRAGKIKEAEEFVLRLPFE---PDHRIWGA 506
                 A   V+   P   P  + ++I    +AG+   A E   R+  +   PD  +  +
Sbjct: 184 KAGRIDAAMSVFDALPARNPVTWTAVITGYSQAGQAGVALELFGRMGLDGVRPDRFVLAS 243

Query: 507 LLGAC---GFCEGNAEIAEHAAKRLLELD 532
              AC   GF EG  +I  +A +   E D
Sbjct: 244 AASACSGLGFVEGGRQIHGYAYRTAAESD 272


>gi|449470118|ref|XP_004152765.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
          Length = 797

 Score =  324 bits (830), Expect = 9e-86,   Method: Compositional matrix adjust.
 Identities = 200/624 (32%), Positives = 315/624 (50%), Gaps = 40/624 (6%)

Query: 7   PKSLVVHLTSSITKYSKRGFIDEAKALFQLMP--QRNVVSYNAMLSGFLQNGRLSEARRL 64
           P    +  T+ IT Y   G ++  + +F   P   R+ V YNAM++G+  NG    A  L
Sbjct: 75  PNPDAIARTTLITAYCALGNLELGREIFNGTPLYMRDSVFYNAMITGYAHNGDGHSALEL 134

Query: 65  FEEMPERNV----VSWTAMI-----------------CGLADAGRVCEARKLFEEMPERN 103
           F  M   +      ++T+++                 C +   G  C +  +   +    
Sbjct: 135 FRAMRRDDFRPDDFTFTSVLSALVLFVGNEQQCGQMHCAVVKTGMGCVSSSVLNALLSVY 194

Query: 104 VVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEE 163
           V   + + +       +  ARK+F+ MP ++ ++W  MI GYV    +  A  +FE M E
Sbjct: 195 VKRASELGIPC---SAMVSARKLFDEMPKRDELTWTTMITGYVRNDDLNGAREVFEAMVE 251

Query: 164 RNVVTWTSMISGYCRAGEVEEGYCLFRRMP----RKNVVSWTAMIGGFAWNGFHKESLLL 219
                W +MISGY   G  +E   L R+M     + + +++T +I   A  G    S  +
Sbjct: 252 NLGAAWNAMISGYVHCGCFQEALTLCRKMRFLGIQFDDITYTTIISACANVG----SFQM 307

Query: 220 FIEMKG-ICDNGNNCNVQSC----NSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMID 274
             +M   I  N  N N   C    N++I  Y +  +++EA+ +F  +PVR+ I+W +++ 
Sbjct: 308 GKQMHAYILKNELNPNHSFCLSVSNALITLYCKNNKVDEARKIFYAMPVRNIITWNAILS 367

Query: 275 GYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNAT 334
           GY++ G++  A   F  MP ++ +  T MISGL QN    E   LF +MR  G  P +  
Sbjct: 368 GYVNAGRMEEAKSFFEEMPVKNLLTLTVMISGLAQNGFGDEGLKLFKQMRLDGFEPCDFA 427

Query: 335 FSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMV 394
           F+    A      ++ GRQ+H  L+    ES L + N +ISMYAKCGV++ A ++F  M 
Sbjct: 428 FAGALTACSVLGALENGRQLHAQLVHLGYESSLSVGNAMISMYAKCGVVEAAESVFVTMP 487

Query: 395 SRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWE 454
           S DLVSWNSM+     HG   + +++F+ ML+ G  P+ +TFL +L+ACSHAGLV +G  
Sbjct: 488 SVDLVSWNSMIAALGQHGHGVKAIELFDQMLKEGVFPDRITFLTVLTACSHAGLVEKGRH 547

Query: 455 LFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFC 514
            FN+M + Y I P  +HY  M++L  RAG    A   +  +P +P   +W ALL  C   
Sbjct: 548 YFNSMLESYGITPCEDHYARMVDLFCRAGMFSYARIVIDSMPSKPGAPVWEALLAGCRI- 606

Query: 515 EGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCS 574
            GN ++   AA++L +L P N   +V+L NIYA  GR  +  K+R  M  + VRK P CS
Sbjct: 607 HGNMDLGIEAAEQLFKLMPQNDGTYVLLSNIYADVGRWNDVAKVRKLMRDQAVRKEPACS 666

Query: 575 WLMRNGGIQMFLSGDKIPAQVAEI 598
           W+     + +F+  D +  +V  +
Sbjct: 667 WIEVENKVHVFMVDDDVHPEVLSV 690



 Score =  105 bits (263), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 89/313 (28%), Positives = 146/313 (46%), Gaps = 43/313 (13%)

Query: 5   NHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRL 64
           NH   L V   + IT Y K   +DEA+ +F  MP RN++++NA+LSG++  GR+ EA+  
Sbjct: 323 NHSFCLSVS-NALITLYCKNNKVDEARKIFYAMPVRNIITWNAILSGYVNAGRMEEAKSF 381

Query: 65  FEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWN---------SMVVGLI 115
           FEEMP +N+++ T MI GLA  G   E  KLF++M        +           V+G +
Sbjct: 382 FEEMPVKNLLTLTVMISGLAQNGFGDEGLKLFKQMRLDGFEPCDFAFAGALTACSVLGAL 441

Query: 116 RNGELNEARKVFNSMPIKNVIS-WNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMIS 174
            NG    A+ V   +  ++ +S  NAMI+ Y +C ++  A  +F  M   ++V+W SMI+
Sbjct: 442 ENGRQLHAQLV--HLGYESSLSVGNAMISMYAKCGVVEAAESVFVTMPSVDLVSWNSMIA 499

Query: 175 GYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCN 234
              + G   +   LF +M ++ V            +     ++L      G+ + G +  
Sbjct: 500 ALGQHGHGVKAIELFDQMLKEGVFP----------DRITFLTVLTACSHAGLVEKGRH-- 547

Query: 235 VQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPD 294
               NSM+  Y                P  D   +  M+D +   G  S A  +  +MP 
Sbjct: 548 --YFNSMLESY-------------GITPCEDH--YARMVDLFCRAGMFSYARIVIDSMPS 590

Query: 295 RD-AVAWTAMISG 306
           +  A  W A+++G
Sbjct: 591 KPGAPVWEALLAG 603


>gi|242050732|ref|XP_002463110.1| hypothetical protein SORBIDRAFT_02g037960 [Sorghum bicolor]
 gi|241926487|gb|EER99631.1| hypothetical protein SORBIDRAFT_02g037960 [Sorghum bicolor]
          Length = 802

 Score =  324 bits (830), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 188/599 (31%), Positives = 320/599 (53%), Gaps = 22/599 (3%)

Query: 12  VHLTSSITKYSKRGFIDEAKALFQLMPQ--RNVVSYNAMLSGFLQNGRLSEARRLFEEMP 69
           V  TS +  Y+  G +  A + F  +PQ  R+ V +NA++S + +    + A  +F  + 
Sbjct: 89  VAATSLVAAYAAAGRLPAAVSFFDAVPQARRDTVLHNAVISAYARASHAAPAVAVFRSLL 148

Query: 70  ERNVV-----SWTAMICGLAD----AGRVCEARKL-FEEMPERNVVSWNSMVVGLIRNGE 119
               +     S+TA++         + R C   +    +     V+S ++ +V L    E
Sbjct: 149 ASGSLRPDDYSFTALLSAAGHLPNISVRHCAQLQCSVLKSGAGGVLSVSNALVALYMKCE 208

Query: 120 ----LNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISG 175
                 +ARKV + MP K+ ++W  M+ GYV    +G A  +FEE++ +  V W +MISG
Sbjct: 209 ALEATRDARKVLDEMPDKDALTWTTMVVGYVRRGDVGAARSVFEEVDVKFDVVWNAMISG 268

Query: 176 YCRAGEVEEGYCLFRRMPRKNV----VSWTAMIGGFAWNGFHKESLLLFIEMKGICDNG- 230
           Y  +G V E + LFRRM  + V     ++T+++   A  GF      +  ++  +  N  
Sbjct: 269 YVHSGMVVEAFELFRRMVLERVPLDEFTFTSVLSACANAGFFAHGKSVHGQITRLQPNFV 328

Query: 231 NNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFH 290
               +   N+++  Y + G +  A+ +FD +  +D +SW +++ GY+    +  A  +F 
Sbjct: 329 PEAALPVNNALVTLYSKCGNIAVARRIFDNMKSKDVVSWNTILSGYVESSCLDKAVEVFE 388

Query: 291 NMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDL 350
            MP ++ ++W  M+SG V      +A  LF  MRA  V P + T++    A G   ++  
Sbjct: 389 EMPYKNELSWMVMVSGYVHGGFSEDALKLFNRMRAEDVKPCDYTYAGAISACGELGSLKH 448

Query: 351 GRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSH 410
           G+Q+H  L++   E      N LI+MYA+CG +  A  +F  M + D VSWN+M+     
Sbjct: 449 GKQLHGHLVQLGFEGSNSAGNALITMYARCGAVKEANLMFLVMPNIDSVSWNAMISALGQ 508

Query: 411 HGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPE 470
           HG   E L++F+ M+  G +P+ ++FL +L+AC+H+GLV  G++ F +M   + I PG +
Sbjct: 509 HGHGREALELFDRMVAEGIYPDRISFLTVLTACNHSGLVDEGFQYFESMKRDFGIIPGED 568

Query: 471 HYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLE 530
           HY  +I+LLGRAG+I EA + +  +PFEP   IW A+L  C    G+ E+  HAA +L +
Sbjct: 569 HYTRLIDLLGRAGRIGEARDLIKTMPFEPTPSIWEAILSGCR-TSGDMELGAHAADQLFK 627

Query: 531 LDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGD 589
           + P +   +++L N Y+A+GR V+  ++R  M  +GV+K PGCSW+     + +F+ GD
Sbjct: 628 MTPQHDGTYILLSNTYSAAGRWVDAARVRKLMRDRGVKKEPGCSWIEAGNKVHVFVVGD 686



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 72/303 (23%), Positives = 130/303 (42%), Gaps = 50/303 (16%)

Query: 11  VVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPE 70
           VV   + ++ Y +   +D+A  +F+ MP +N +S+  M+SG++  G   +A +LF  M  
Sbjct: 364 VVSWNTILSGYVESSCLDKAVEVFEEMPYKNELSWMVMVSGYVHGGFSEDALKLFNRMRA 423

Query: 71  RNV----VSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLI----RNGELNE 122
            +V     ++   I    + G +   ++L   + +      NS    LI    R G + E
Sbjct: 424 EDVKPCDYTYAGAISACGELGSLKHGKQLHGHLVQLGFEGSNSAGNALITMYARCGAVKE 483

Query: 123 ARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNV----VTWTSMISGYCR 178
           A  +F  MP  + +SWNAMI+   +     EA+ LF+ M    +    +++ ++++    
Sbjct: 484 ANLMFLVMPNIDSVSWNAMISALGQHGHGREALELFDRMVAEGIYPDRISFLTVLTACNH 543

Query: 179 AGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSC 238
           +G V+EG+  F  M R        +I G       ++     I++ G             
Sbjct: 544 SGLVDEGFQYFESMKRD-----FGIIPG-------EDHYTRLIDLLG------------- 578

Query: 239 NSMINGYIRFGRLEEAQNLFDTVPVRDEIS-WTSMIDGYLSVGQVS----NAYYLFHNMP 293
                   R GR+ EA++L  T+P     S W +++ G  + G +      A  LF   P
Sbjct: 579 --------RAGRIGEARDLIKTMPFEPTPSIWEAILSGCRTSGDMELGAHAADQLFKMTP 630

Query: 294 DRD 296
             D
Sbjct: 631 QHD 633


>gi|297851096|ref|XP_002893429.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297339271|gb|EFH69688.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 790

 Score =  323 bits (829), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 197/623 (31%), Positives = 321/623 (51%), Gaps = 48/623 (7%)

Query: 14  LTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMP--ER 71
           L   I  Y K   +D A+ LF  + + + ++   M+SG+  +G ++ AR +FEE P   R
Sbjct: 52  LNRLIDVYCKSSELDYARQLFDEISEPDKIARTTMVSGYCASGDIALARSVFEETPVSMR 111

Query: 72  NVVSWTAMICGLADAGRVCEARKLFEEMPER----NVVSWNSMVVGLIRNGELNEARKVF 127
           + V + AMI G +       A  LF +M       +  ++ S++ GL    +  +    F
Sbjct: 112 DTVMYNAMITGFSHNNDGYSAINLFCKMKHEGFKPDDFTYASVLAGLALVVDDEKQCVQF 171

Query: 128 NSMPIKNVISW-----NAMIAGYVECC----MMGEAIVLFEEMEERNVVTWTSMISGYCR 178
           ++  +K+   +     NA+++ Y  C     ++  A  +F+++ E++  +WT+M++GY +
Sbjct: 172 HAAALKSGAGYVTSVSNALVSVYSRCASSPSLLHSARKVFDDIPEKDERSWTTMMTGYVK 231

Query: 179 AGEVEEGYCLFRRMPRK-NVVSWTAMIGGFAWNGFHKESLLLFIEM--KGI--------- 226
            G  + G  L + M     +V++ AMI G+   G ++E+L +   M   GI         
Sbjct: 232 NGCFDLGKELLKGMDENMKLVAYNAMISGYVNCGLYQEALEMVRRMVSSGIELDEFTYPS 291

Query: 227 ----CDNGN----------------NCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDE 266
               C N                  + +    NS++  Y + G+  EA+ +F+ +P +D 
Sbjct: 292 VIRACANARLLQLGKQVHAYVLRREDFSFHFDNSLVTLYYKCGKFNEARAIFEKMPAKDL 351

Query: 267 ISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAH 326
           +SW +++ GY+S G +  A  +F  M +++ ++W  MISGL +N    E   LF  M+  
Sbjct: 352 VSWNALLSGYVSSGHIGEAKLIFKEMKEKNILSWMIMISGLAENGFGEEGLKLFSCMKRE 411

Query: 327 GVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNA 386
           G  P +  FS    +         G+Q H  L+K   +S L   N LI+MYAKCGV++ A
Sbjct: 412 GFEPCDYAFSGAIKSCAVLGAYCNGQQFHAQLVKIGFDSSLSAGNALITMYAKCGVVEEA 471

Query: 387 YNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHA 446
             +F  M   D VSWN+++     HG   E + V+E ML+ G  P+ +TFL +L+ACSHA
Sbjct: 472 QQVFRTMPCLDSVSWNALIAALGQHGHGVEAVDVYEEMLKKGIRPDRITFLTVLTACSHA 531

Query: 447 GLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGA 506
           GLV +G + FN+M  VY+I PG +HY  +I+LL R+GK  EAE  +  LPF+P   IW A
Sbjct: 532 GLVDQGRKYFNSMETVYRIPPGADHYARLIDLLCRSGKFSEAESIIESLPFKPTAEIWEA 591

Query: 507 LLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKG 566
           LL  C    GN E+   AA +L  L P +   +++L N+YAA+G+  E  ++R  M  +G
Sbjct: 592 LLSGCRV-HGNMELGIIAADKLFGLIPEHDGTYMLLSNMYAATGQWEEVARVRKLMRDRG 650

Query: 567 VRKVPGCSWLMRNGGIQMFLSGD 589
           V+K   CSW+     +  FL  D
Sbjct: 651 VKKEVACSWIEMETQVHTFLVDD 673



 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 51/198 (25%), Positives = 102/198 (51%), Gaps = 12/198 (6%)

Query: 7   PKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFE 66
           P   +V   + ++ Y   G I EAK +F+ M ++N++S+  M+SG  +NG   E  +LF 
Sbjct: 347 PAKDLVSWNALLSGYVSSGHIGEAKLIFKEMKEKNILSWMIMISGLAENGFGEEGLKLFS 406

Query: 67  EMPERNV----VSWTAMICGLADAGRVCEARKLFEEMP----ERNVVSWNSMVVGLIRNG 118
            M          +++  I   A  G  C  ++   ++     + ++ + N+++    + G
Sbjct: 407 CMKREGFEPCDYAFSGAIKSCAVLGAYCNGQQFHAQLVKIGFDSSLSAGNALITMYAKCG 466

Query: 119 ELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNV----VTWTSMIS 174
            + EA++VF +MP  + +SWNA+IA   +     EA+ ++EEM ++ +    +T+ ++++
Sbjct: 467 VVEEAQQVFRTMPCLDSVSWNALIAALGQHGHGVEAVDVYEEMLKKGIRPDRITFLTVLT 526

Query: 175 GYCRAGEVEEGYCLFRRM 192
               AG V++G   F  M
Sbjct: 527 ACSHAGLVDQGRKYFNSM 544


>gi|115452665|ref|NP_001049933.1| Os03g0314400 [Oryza sativa Japonica Group]
 gi|108707812|gb|ABF95607.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113548404|dbj|BAF11847.1| Os03g0314400 [Oryza sativa Japonica Group]
 gi|125586044|gb|EAZ26708.1| hypothetical protein OsJ_10614 [Oryza sativa Japonica Group]
          Length = 648

 Score =  323 bits (829), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 194/533 (36%), Positives = 284/533 (53%), Gaps = 53/533 (9%)

Query: 90  CEARKLFEEMPE-----------RNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISW 138
           C  R+  EE  +           RN+   N+++      G L +ARKVF++ P+ + +SW
Sbjct: 113 CATRRAIEEGRQVHCHAVRHGFGRNLYLANALMSMYSACGCLGDARKVFDAGPVWDAVSW 172

Query: 139 NAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVV 198
           N ++A YV+   + +A+ +F  M ER     +SM+S + R G V+E   +F  + RK+V 
Sbjct: 173 NTILAAYVQAEDVDQAVGVFARMPERGAAAVSSMVSLFGRRGMVDEARKVFDVVERKDVF 232

Query: 199 SWTAMIGGFAWNGFHKESLLLFIEMKG---------------------ICDNGNNC---- 233
           +WTAMI  F  NG   E+L LF +M+G                     +  NG  C    
Sbjct: 233 TWTAMISCFQRNGKFAEALALFSDMRGEGWPVDEAVMVCVVAACARLEVTRNGEMCHGLA 292

Query: 234 ---------NVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSN 284
                    NVQ  N++I+ Y  F  +  A+ LFD+    D+ SW SMI GYL  G V +
Sbjct: 293 FRAGLGSRLNVQ--NALIHMYSSFLNVVAARRLFDSGQCLDQFSWNSMIAGYLKNGSVKD 350

Query: 285 AYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGA 344
           A  LF  MPD+D V+WT MISG VQN+   EA  +F  M+A G+ P   T   +  A   
Sbjct: 351 AKELFTVMPDKDNVSWTTMISGCVQNDQSSEALTIFNNMQAQGIKPDEVTLVSVISACTN 410

Query: 345 TANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSM 404
            ++++ G+ +H  + + +    +IL   LI MY KCG +++A  +F  M  R    WN++
Sbjct: 411 MSSLEQGKSMHEYIREHQYTITVILGTSLIDMYMKCGCLESALEVFDTMEERGTPCWNAV 470

Query: 405 VMGFSHHGLANETLKVFESMLESGT-HPNSVTFLGILSACSHAGLVSRGWELFNAMFDVY 463
           ++G + +GL  ++L +F  M  S T  PN +TF G+LSAC HAGLV  G   F  M   Y
Sbjct: 471 IVGLAMNGLVMKSLDMFSEMESSSTATPNEITFTGVLSACRHAGLVEEGQHFFKLMQHKY 530

Query: 464 KIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEH 523
            I P   HY  M++LLGRAG +KEAE  +  +P  PD   WGALLG+C +  G+ E+ E 
Sbjct: 531 HIIPNIRHYGCMVDLLGRAGYVKEAENLIESMPMSPDVPAWGALLGSC-WKHGDNEVGER 589

Query: 524 AAKRLLELDPLNAPAHVVLCNIYAASG--RHVEEHKLRMDMGLKGVRKVPGCS 574
             ++L+ LDP +   H +L NIYA+ G  +HV++  LR  M    V K+PG S
Sbjct: 590 VGRKLVNLDPHHDGFHTMLSNIYASEGMWQHVKD--LRGSMKQWHVPKIPGSS 640



 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 110/441 (24%), Positives = 200/441 (45%), Gaps = 49/441 (11%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWT 77
           ++ YS  G + +A+ +F   P  + VS+N +L+ ++Q   + +A  +F  MPER   + +
Sbjct: 145 MSMYSACGCLGDARKVFDAGPVWDAVSWNTILAAYVQAEDVDQAVGVFARMPERGAAAVS 204

Query: 78  AMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSM-----PI 132
           +M+      G V EARK+F+ +  ++V +W +M+    RNG+  EA  +F+ M     P+
Sbjct: 205 SMVSLFGRRGMVDEARKVFDVVERKDVFTWTAMISCFQRNGKFAEALALFSDMRGEGWPV 264

Query: 133 KNVI----------------------------------SWNAMIAGYVECCMMGEAIVLF 158
              +                                    NA+I  Y     +  A  LF
Sbjct: 265 DEAVMVCVVAACARLEVTRNGEMCHGLAFRAGLGSRLNVQNALIHMYSSFLNVVAARRLF 324

Query: 159 EEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLL 218
           +  +  +  +W SMI+GY + G V++   LF  MP K+ VSWT MI G   N    E+L 
Sbjct: 325 DSGQCLDQFSWNSMIAGYLKNGSVKDAKELFTVMPDKDNVSWTTMISGCVQNDQSSEALT 384

Query: 219 LFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDE----ISWTSMID 274
           +F  M+     G   +  +  S+I+       LE+ +++ + +         I  TS+ID
Sbjct: 385 IFNNMQA---QGIKPDEVTLVSVISACTNMSSLEQGKSMHEYIREHQYTITVILGTSLID 441

Query: 275 GYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVP-PLNA 333
            Y+  G + +A  +F  M +R    W A+I GL  N L +++  +F EM +     P   
Sbjct: 442 MYMKCGCLESALEVFDTMEERGTPCWNAVIVGLAMNGLVMKSLDMFSEMESSSTATPNEI 501

Query: 334 TFSVLFGAAGATANIDLGRQIHCVLM-KTESESDLILENCLISMYAKCGVIDNAYNIFSN 392
           TF+ +  A      ++ G+    ++  K     ++    C++ +  + G +  A N+  +
Sbjct: 502 TFTGVLSACRHAGLVEEGQHFFKLMQHKYHIIPNIRHYGCMVDLLGRAGYVKEAENLIES 561

Query: 393 M-VSRDLVSWNSMVMGFSHHG 412
           M +S D+ +W +++     HG
Sbjct: 562 MPMSPDVPAWGALLGSCWKHG 582



 Score =  119 bits (297), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 94/382 (24%), Positives = 161/382 (42%), Gaps = 86/382 (22%)

Query: 7   PKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFE 66
           P+     ++S ++ + +RG +DEA+ +F ++ +++V ++ AM+S F +NG+ +EA  LF 
Sbjct: 196 PERGAAAVSSMVSLFGRRGMVDEARKVFDVVERKDVFTWTAMISCFQRNGKFAEALALFS 255

Query: 67  EMP-ERNVVSWTAMICGLADAGR------------------------------------- 88
           +M  E   V    M+C +A   R                                     
Sbjct: 256 DMRGEGWPVDEAVMVCVVAACARLEVTRNGEMCHGLAFRAGLGSRLNVQNALIHMYSSFL 315

Query: 89  -VCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVE 147
            V  AR+LF+     +  SWNSM+ G ++NG + +A+++F  MP K+ +SW  MI+G V+
Sbjct: 316 NVVAARRLFDSGQCLDQFSWNSMIAGYLKNGSVKDAKELFTVMPDKDNVSWTTMISGCVQ 375

Query: 148 CCMMGEAIVLFEEMEER---------------------------------------NVVT 168
                EA+ +F  M+ +                                        V+ 
Sbjct: 376 NDQSSEALTIFNNMQAQGIKPDEVTLVSVISACTNMSSLEQGKSMHEYIREHQYTITVIL 435

Query: 169 WTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICD 228
            TS+I  Y + G +E    +F  M  +    W A+I G A NG   +SL +F EM+    
Sbjct: 436 GTSLIDMYMKCGCLESALEVFDTMEERGTPCWNAVIVGLAMNGLVMKSLDMFSEMES--S 493

Query: 229 NGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEI-----SWTSMIDGYLSVGQVS 283
           +    N  +   +++     G +EE Q+ F  +  +  I      +  M+D     G V 
Sbjct: 494 STATPNEITFTGVLSACRHAGLVEEGQHFFKLMQHKYHIIPNIRHYGCMVDLLGRAGYVK 553

Query: 284 NAYYLFHNMP-DRDAVAWTAMI 304
            A  L  +MP   D  AW A++
Sbjct: 554 EAENLIESMPMSPDVPAWGALL 575



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 51/180 (28%), Positives = 82/180 (45%), Gaps = 26/180 (14%)

Query: 324 RAHGVP----PLNA---------TFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILE 370
           R HG+P    PL A         T ++L  A      I+ GRQ+HC  ++     +L L 
Sbjct: 82  REHGLPHLCLPLYASMSAAPDCYTHTILAAACATRRAIEEGRQVHCHAVRHGFGRNLYLA 141

Query: 371 NCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTH 430
           N L+SMY+ CG + +A  +F      D VSWN+++  +      ++ + VF  M E G  
Sbjct: 142 NALMSMYSACGCLGDARKVFDAGPVWDAVSWNTILAAYVQAEDVDQAVGVFARMPERGAA 201

Query: 431 PNSVTFLGILSACSHAGLVSRGWELFNAM--FDVYKIQPGPEHYVSMINLLGRAGKIKEA 488
             S     ++S     G+V    ++F+ +   DV+        + +MI+   R GK  EA
Sbjct: 202 AVS----SMVSLFGRRGMVDEARKVFDVVERKDVFT-------WTAMISCFQRNGKFAEA 250



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 44/151 (29%), Positives = 74/151 (49%), Gaps = 12/151 (7%)

Query: 4   RNHPKSLVVHL-TSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEAR 62
           R H  ++ V L TS I  Y K G ++ A  +F  M +R    +NA++ G   NG + ++ 
Sbjct: 425 REHQYTITVILGTSLIDMYMKCGCLESALEVFDTMEERGTPCWNAVIVGLAMNGLVMKSL 484

Query: 63  RLFEEMPER-----NVVSWTAMICGLADAGRVCEARKLFEEMPER-----NVVSWNSMVV 112
            +F EM        N +++T ++     AG V E +  F+ M  +     N+  +  MV 
Sbjct: 485 DMFSEMESSSTATPNEITFTGVLSACRHAGLVEEGQHFFKLMQHKYHIIPNIRHYGCMVD 544

Query: 113 GLIRNGELNEARKVFNSMPIK-NVISWNAMI 142
            L R G + EA  +  SMP+  +V +W A++
Sbjct: 545 LLGRAGYVKEAENLIESMPMSPDVPAWGALL 575


>gi|125543615|gb|EAY89754.1| hypothetical protein OsI_11297 [Oryza sativa Indica Group]
          Length = 648

 Score =  323 bits (829), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 194/533 (36%), Positives = 284/533 (53%), Gaps = 53/533 (9%)

Query: 90  CEARKLFEEMPE-----------RNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISW 138
           C  R+  EE  +           RN+   N+++      G L +ARKVF++ P+ + +SW
Sbjct: 113 CATRRAIEEGRQVHCHAVRHGFGRNLYLANALMSMYSACGCLGDARKVFDAGPVWDAVSW 172

Query: 139 NAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVV 198
           N ++A YV+   + +A+ +F  M ER     +SM+S + R G V+E   +F  + RK+V 
Sbjct: 173 NTILAAYVQAEDVDQAVGVFARMPERGAAAVSSMVSLFGRRGMVDEARKVFDGVERKDVF 232

Query: 199 SWTAMIGGFAWNGFHKESLLLFIEMKG---------------------ICDNGNNC---- 233
           +WTAMI  F  NG   E+L LF +M+G                     +  NG  C    
Sbjct: 233 TWTAMISCFQRNGKFAEALALFSDMRGEGWPVDEAVMVCVVAACARLEVTRNGEMCHGLA 292

Query: 234 ---------NVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSN 284
                    NVQ  N++I+ Y  F  +  A+ LFD+    D+ SW SMI GYL  G V +
Sbjct: 293 FRAGLGSRLNVQ--NALIHMYSSFLNVVAARRLFDSGQCLDQFSWNSMIAGYLKNGSVKD 350

Query: 285 AYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGA 344
           A  LF  MPD+D V+WT MISG VQN+   EA  +F  M+A G+ P   T   +  A   
Sbjct: 351 AKELFTVMPDKDNVSWTTMISGCVQNDQSSEALTIFNNMQAQGIKPDEVTLVSVISACTN 410

Query: 345 TANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSM 404
            ++++ G+ +H  + + +    +IL   LI MY KCG +++A  +F  M  R    WN++
Sbjct: 411 MSSLEQGKSMHEYIREHQYTITVILGTSLIDMYMKCGCLESALEVFDTMEERGTPCWNAV 470

Query: 405 VMGFSHHGLANETLKVFESMLESGT-HPNSVTFLGILSACSHAGLVSRGWELFNAMFDVY 463
           ++G + +GL  ++L +F  M  S T  PN +TF G+LSAC HAGLV  G   F  M   Y
Sbjct: 471 IVGLAMNGLVMKSLDMFSEMESSSTATPNEITFTGVLSACRHAGLVEEGQHFFKLMQHKY 530

Query: 464 KIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEH 523
            I P   HY  M++LLGRAG +KEAE  +  +P  PD   WGALLG+C +  G+ E+ E 
Sbjct: 531 HIIPNIRHYGCMVDLLGRAGYVKEAENLIESMPMSPDVPAWGALLGSC-WKHGDNEVGER 589

Query: 524 AAKRLLELDPLNAPAHVVLCNIYAASG--RHVEEHKLRMDMGLKGVRKVPGCS 574
             ++L+ LDP +   H +L NIYA+ G  +HV++  LR  M    V K+PG S
Sbjct: 590 VGRKLVNLDPHHDGFHTMLSNIYASEGMWQHVKD--LRGSMKQWHVPKIPGSS 640



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 110/441 (24%), Positives = 200/441 (45%), Gaps = 49/441 (11%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWT 77
           ++ YS  G + +A+ +F   P  + VS+N +L+ ++Q   + +A  +F  MPER   + +
Sbjct: 145 MSMYSACGCLGDARKVFDAGPVWDAVSWNTILAAYVQAEDVDQAVGVFARMPERGAAAVS 204

Query: 78  AMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSM-----PI 132
           +M+      G V EARK+F+ +  ++V +W +M+    RNG+  EA  +F+ M     P+
Sbjct: 205 SMVSLFGRRGMVDEARKVFDGVERKDVFTWTAMISCFQRNGKFAEALALFSDMRGEGWPV 264

Query: 133 KNVI----------------------------------SWNAMIAGYVECCMMGEAIVLF 158
              +                                    NA+I  Y     +  A  LF
Sbjct: 265 DEAVMVCVVAACARLEVTRNGEMCHGLAFRAGLGSRLNVQNALIHMYSSFLNVVAARRLF 324

Query: 159 EEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLL 218
           +  +  +  +W SMI+GY + G V++   LF  MP K+ VSWT MI G   N    E+L 
Sbjct: 325 DSGQCLDQFSWNSMIAGYLKNGSVKDAKELFTVMPDKDNVSWTTMISGCVQNDQSSEALT 384

Query: 219 LFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDE----ISWTSMID 274
           +F  M+     G   +  +  S+I+       LE+ +++ + +         I  TS+ID
Sbjct: 385 IFNNMQA---QGIKPDEVTLVSVISACTNMSSLEQGKSMHEYIREHQYTITVILGTSLID 441

Query: 275 GYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVP-PLNA 333
            Y+  G + +A  +F  M +R    W A+I GL  N L +++  +F EM +     P   
Sbjct: 442 MYMKCGCLESALEVFDTMEERGTPCWNAVIVGLAMNGLVMKSLDMFSEMESSSTATPNEI 501

Query: 334 TFSVLFGAAGATANIDLGRQIHCVLM-KTESESDLILENCLISMYAKCGVIDNAYNIFSN 392
           TF+ +  A      ++ G+    ++  K     ++    C++ +  + G +  A N+  +
Sbjct: 502 TFTGVLSACRHAGLVEEGQHFFKLMQHKYHIIPNIRHYGCMVDLLGRAGYVKEAENLIES 561

Query: 393 M-VSRDLVSWNSMVMGFSHHG 412
           M +S D+ +W +++     HG
Sbjct: 562 MPMSPDVPAWGALLGSCWKHG 582



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 94/382 (24%), Positives = 160/382 (41%), Gaps = 86/382 (22%)

Query: 7   PKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFE 66
           P+     ++S ++ + +RG +DEA+ +F  + +++V ++ AM+S F +NG+ +EA  LF 
Sbjct: 196 PERGAAAVSSMVSLFGRRGMVDEARKVFDGVERKDVFTWTAMISCFQRNGKFAEALALFS 255

Query: 67  EMP-ERNVVSWTAMICGLADAGR------------------------------------- 88
           +M  E   V    M+C +A   R                                     
Sbjct: 256 DMRGEGWPVDEAVMVCVVAACARLEVTRNGEMCHGLAFRAGLGSRLNVQNALIHMYSSFL 315

Query: 89  -VCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVE 147
            V  AR+LF+     +  SWNSM+ G ++NG + +A+++F  MP K+ +SW  MI+G V+
Sbjct: 316 NVVAARRLFDSGQCLDQFSWNSMIAGYLKNGSVKDAKELFTVMPDKDNVSWTTMISGCVQ 375

Query: 148 CCMMGEAIVLFEEMEER---------------------------------------NVVT 168
                EA+ +F  M+ +                                        V+ 
Sbjct: 376 NDQSSEALTIFNNMQAQGIKPDEVTLVSVISACTNMSSLEQGKSMHEYIREHQYTITVIL 435

Query: 169 WTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICD 228
            TS+I  Y + G +E    +F  M  +    W A+I G A NG   +SL +F EM+    
Sbjct: 436 GTSLIDMYMKCGCLESALEVFDTMEERGTPCWNAVIVGLAMNGLVMKSLDMFSEMES--S 493

Query: 229 NGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEI-----SWTSMIDGYLSVGQVS 283
           +    N  +   +++     G +EE Q+ F  +  +  I      +  M+D     G V 
Sbjct: 494 STATPNEITFTGVLSACRHAGLVEEGQHFFKLMQHKYHIIPNIRHYGCMVDLLGRAGYVK 553

Query: 284 NAYYLFHNMP-DRDAVAWTAMI 304
            A  L  +MP   D  AW A++
Sbjct: 554 EAENLIESMPMSPDVPAWGALL 575



 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 51/180 (28%), Positives = 82/180 (45%), Gaps = 26/180 (14%)

Query: 324 RAHGVP----PLNA---------TFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILE 370
           R HG+P    PL A         T ++L  A      I+ GRQ+HC  ++     +L L 
Sbjct: 82  REHGLPHLCLPLYASMSAAPDCYTHTILAAACATRRAIEEGRQVHCHAVRHGFGRNLYLA 141

Query: 371 NCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTH 430
           N L+SMY+ CG + +A  +F      D VSWN+++  +      ++ + VF  M E G  
Sbjct: 142 NALMSMYSACGCLGDARKVFDAGPVWDAVSWNTILAAYVQAEDVDQAVGVFARMPERGAA 201

Query: 431 PNSVTFLGILSACSHAGLVSRGWELFNAM--FDVYKIQPGPEHYVSMINLLGRAGKIKEA 488
             S     ++S     G+V    ++F+ +   DV+        + +MI+   R GK  EA
Sbjct: 202 AVS----SMVSLFGRRGMVDEARKVFDGVERKDVFT-------WTAMISCFQRNGKFAEA 250



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 44/151 (29%), Positives = 74/151 (49%), Gaps = 12/151 (7%)

Query: 4   RNHPKSLVVHL-TSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEAR 62
           R H  ++ V L TS I  Y K G ++ A  +F  M +R    +NA++ G   NG + ++ 
Sbjct: 425 REHQYTITVILGTSLIDMYMKCGCLESALEVFDTMEERGTPCWNAVIVGLAMNGLVMKSL 484

Query: 63  RLFEEMPER-----NVVSWTAMICGLADAGRVCEARKLFEEMPER-----NVVSWNSMVV 112
            +F EM        N +++T ++     AG V E +  F+ M  +     N+  +  MV 
Sbjct: 485 DMFSEMESSSTATPNEITFTGVLSACRHAGLVEEGQHFFKLMQHKYHIIPNIRHYGCMVD 544

Query: 113 GLIRNGELNEARKVFNSMPIK-NVISWNAMI 142
            L R G + EA  +  SMP+  +V +W A++
Sbjct: 545 LLGRAGYVKEAENLIESMPMSPDVPAWGALL 575


>gi|49387750|dbj|BAD26238.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|218190136|gb|EEC72563.1| hypothetical protein OsI_05996 [Oryza sativa Indica Group]
          Length = 803

 Score =  323 bits (827), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 194/611 (31%), Positives = 329/611 (53%), Gaps = 42/611 (6%)

Query: 21  YSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNV----VSW 76
           Y+K G + +A  LF  M + N VS+ AM+ G  Q G + +A RLF  M    V    VS 
Sbjct: 186 YTKCGSVGDAVRLFYGMARPNEVSFTAMMGGLAQTGSIDDALRLFARMCRSGVPVDPVSV 245

Query: 77  TAMICGLADAG----RVCEARKLFEEMPERNVVSW--------NSMVVGLIRNGELNEAR 124
           ++++   A A      V  A +L + +    V           NS++    +  E++EA 
Sbjct: 246 SSVLGACAQACATDYSVARAFRLGQAIHALVVRKGFGSDQHVGNSLIDMYTKCVEMDEAV 305

Query: 125 KVFNSMPIKNVISWNAMIAGYVE---CCMMGEAIVLFEEME-ERNVVTWTSMISGYCRAG 180
           KVF S+P   ++SWN +I G+ +   C    E + L +E   E N VT++++++   +A 
Sbjct: 306 KVFESLPSVTIVSWNILITGFGQEGSCAKAVEVLSLMQEAGFEPNEVTYSNLLASCIKAR 365

Query: 181 EVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQ---- 236
           +V     +F ++ R +V +W  ++ G+     H++++ LF  M+       + NVQ    
Sbjct: 366 DVHSARAMFDKISRPSVTTWNTLLSGYCQEEQHQDTIELFRRMQ-------HQNVQPDRT 418

Query: 237 -------SCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLF 289
                  SC+ +  G + FGR   + ++   +   D    + ++D Y   GQ+  A  +F
Sbjct: 419 TLAVILSSCSKL--GILDFGRQVHSASVRFLLH-NDMFVASGLVDMYSKCGQIGIARSIF 475

Query: 290 HNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANID 349
           + M +RD V W ++ISGL  + L  EA   F +MR +G+ P  ++++ +  +    ++I 
Sbjct: 476 NKMTERDVVCWNSIISGLTIHSLNKEAFDFFKQMRENGIMPTESSYASMINSCSRLSSIP 535

Query: 350 LGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFS 409
            GRQIH  +MK   + ++ + + LI MYAKCG +D+A   F  M+ +++V+WN M+ G++
Sbjct: 536 HGRQIHAQVMKDGYDQNVYVGSALIDMYAKCGNMDDARLFFDTMMMKNIVAWNEMIHGYA 595

Query: 410 HHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGP 469
            +GL ++ +++FE ML +   P++VTF+ +L+ CSH+GLV +    FN+M + Y I P  
Sbjct: 596 QNGLGDKAVELFEYMLTTEQKPDAVTFIAVLTGCSHSGLVDKAMAFFNSMENSYGIIPLA 655

Query: 470 EHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLL 529
           EHY  +I+ LGRAG+  E E  + ++P + D  IW  LL AC     NAE+ + AA+ L 
Sbjct: 656 EHYTCLIDALGRAGRFVEVEALIHKMPCKDDPIIWEVLLAAC-VVHHNAELGKCAAEHLF 714

Query: 530 ELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGD 589
            +DP N   +V+L NIYA+ GRH +   +R  M  +GV K  G SW+ +  G++ F+  D
Sbjct: 715 RIDPKNPSPYVLLSNIYASLGRHGDASAVRALMSNRGVVKGRGYSWIDQKDGVRAFMVAD 774

Query: 590 KIPAQVAEILL 600
            + A   E+ +
Sbjct: 775 DLGADGGELTM 785



 Score =  184 bits (467), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 137/528 (25%), Positives = 236/528 (44%), Gaps = 62/528 (11%)

Query: 21  YSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMI 80
           YS+ G    A   F+ +P  N  SYNA LS   + G L  AR L   MP RN VSW  +I
Sbjct: 53  YSRAGLPRHALLAFRALPSPNDYSYNAALSAACRAGDLDAARDLLGGMPRRNAVSWNTVI 112

Query: 81  CGLADA-GRVCEARKLFEEMPERNVVSWNSMVVGLIRN----GELNEARKVFNSMPIK-- 133
             LA + G   EA +++  M    ++  +  +  ++        L + R+  + + +K  
Sbjct: 113 SALARSPGDGGEAVEMYGRMRAEGLLPTHFTLASVLSACGGLAALGDGRRC-HGVAVKVG 171

Query: 134 ---NVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFR 190
              N    NA++  Y +C  +G+A+ LF  M   N V++T+M+ G  + G +++   LF 
Sbjct: 172 LDANQFVENALLGMYTKCGSVGDAVRLFYGMARPNEVSFTAMMGGLAQTGSIDDALRLFA 231

Query: 191 RMPRKNV----VSWTAMIGGFAWNGFHKESLLLFIEMKG-----ICDNGNNCNVQSCNSM 241
           RM R  V    VS ++++G  A       S+     +       +   G   +    NS+
Sbjct: 232 RMCRSGVPVDPVSVSSVLGACAQACATDYSVARAFRLGQAIHALVVRKGFGSDQHVGNSL 291

Query: 242 INGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGY------------LSVGQ-------- 281
           I+ Y +   ++EA  +F+++P    +SW  +I G+            LS+ Q        
Sbjct: 292 IDMYTKCVEMDEAVKVFESLPSVTIVSWNILITGFGQEGSCAKAVEVLSLMQEAGFEPNE 351

Query: 282 ---------------VSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAH 326
                          V +A  +F  +       W  ++SG  Q E   +   LF  M+  
Sbjct: 352 VTYSNLLASCIKARDVHSARAMFDKISRPSVTTWNTLLSGYCQEEQHQDTIELFRRMQHQ 411

Query: 327 GVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNA 386
            V P   T +V+  +      +D GRQ+H   ++    +D+ + + L+ MY+KCG I  A
Sbjct: 412 NVQPDRTTLAVILSSCSKLGILDFGRQVHSASVRFLLHNDMFVASGLVDMYSKCGQIGIA 471

Query: 387 YNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHA 446
            +IF+ M  RD+V WNS++ G + H L  E    F+ M E+G  P   ++  ++++CS  
Sbjct: 472 RSIFNKMTERDVVCWNSIISGLTIHSLNKEAFDFFKQMRENGIMPTESSYASMINSCSRL 531

Query: 447 GLVSRGWELF-NAMFDVYKIQPGPEHYV--SMINLLGRAGKIKEAEEF 491
             +  G ++    M D Y        YV  ++I++  + G + +A  F
Sbjct: 532 SSIPHGRQIHAQVMKDGYD----QNVYVGSALIDMYAKCGNMDDARLF 575



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 107/429 (24%), Positives = 192/429 (44%), Gaps = 24/429 (5%)

Query: 139 NAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVV 198
           N ++  Y    +   A++ F  +   N  ++ + +S  CRAG+++    L   MPR+N V
Sbjct: 47  NRLVELYSRAGLPRHALLAFRALPSPNDYSYNAALSAACRAGDLDAARDLLGGMPRRNAV 106

Query: 199 SWTAMIGGFAWN-GFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNL 257
           SW  +I   A + G   E++ ++  M+       +  + S  S   G    G       +
Sbjct: 107 SWNTVISALARSPGDGGEAVEMYGRMRAEGLLPTHFTLASVLSACGGLAALGDGRRCHGV 166

Query: 258 FDTVPVR-DEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEA 316
              V +  ++    +++  Y   G V +A  LF+ M   + V++TAM+ GL Q     +A
Sbjct: 167 AVKVGLDANQFVENALLGMYTKCGSVGDAVRLFYGMARPNEVSFTAMMGGLAQTGSIDDA 226

Query: 317 TYLFMEMRAHGVPPLNATFSVLFGAAGATANID--------LGRQIHCVLMKTESESDLI 368
             LF  M   GVP    + S + GA       D        LG+ IH ++++    SD  
Sbjct: 227 LRLFARMCRSGVPVDPVSVSSVLGACAQACATDYSVARAFRLGQAIHALVVRKGFGSDQH 286

Query: 369 LENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESG 428
           + N LI MY KC  +D A  +F ++ S  +VSWN ++ GF   G   + ++V   M E+G
Sbjct: 287 VGNSLIDMYTKCVEMDEAVKVFESLPSVTIVSWNILITGFGQEGSCAKAVEVLSLMQEAG 346

Query: 429 THPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEA 488
             PN VT+  +L++C    + +R      AMFD    +P    + ++++   +  + ++ 
Sbjct: 347 FEPNEVTYSNLLASC----IKARDVHSARAMFDKIS-RPSVTTWNTLLSGYCQEEQHQDT 401

Query: 489 EEFVLRLP---FEPDHRIWGALLGAC---GFCEGNAEIAEHAAKRLLELDPLNAPAHVVL 542
            E   R+     +PD      +L +C   G  +   ++   + + LL  D   A     L
Sbjct: 402 IELFRRMQHQNVQPDRTTLAVILSSCSKLGILDFGRQVHSASVRFLLHNDMFVASG---L 458

Query: 543 CNIYAASGR 551
            ++Y+  G+
Sbjct: 459 VDMYSKCGQ 467



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 96/422 (22%), Positives = 188/422 (44%), Gaps = 59/422 (13%)

Query: 16  SSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPER---- 71
           S I  Y+K   +DEA  +F+ +P   +VS+N +++GF Q G  ++A  +   M E     
Sbjct: 290 SLIDMYTKCVEMDEAVKVFESLPSVTIVSWNILITGFGQEGSCAKAVEVLSLMQEAGFEP 349

Query: 72  NVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMP 131
           N V+++ ++     A  V  AR +F+++   +V +WN+++ G  +  +  +  ++F  M 
Sbjct: 350 NEVTYSNLLASCIKARDVHSARAMFDKISRPSVTTWNTLLSGYCQEEQHQDTIELFRRMQ 409

Query: 132 IKNVISWNAMIAGYVECC----------MMGEAIVLFEEMEERNVVTWTSMISGYCRAGE 181
            +NV      +A  +  C           +  A V F  +   ++   + ++  Y + G+
Sbjct: 410 HQNVQPDRTTLAVILSSCSKLGILDFGRQVHSASVRF--LLHNDMFVASGLVDMYSKCGQ 467

Query: 182 VEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMK----------------- 224
           +     +F +M  ++VV W ++I G   +  +KE+   F +M+                 
Sbjct: 468 IGIARSIFNKMTERDVVCWNSIISGLTIHSLNKEAFDFFKQMRENGIMPTESSYASMINS 527

Query: 225 ---------------GICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISW 269
                           +  +G + NV   +++I+ Y + G +++A+  FDT+ +++ ++W
Sbjct: 528 CSRLSSIPHGRQIHAQVMKDGYDQNVYVGSALIDMYAKCGNMDDARLFFDTMMMKNIVAW 587

Query: 270 TSMIDGYLSVGQVSNAYYLFHNM----PDRDAVAWTAMISGLVQNELFVEATYLFMEMR- 324
             MI GY   G    A  LF  M       DAV + A+++G   + L  +A   F  M  
Sbjct: 588 NEMIHGYAQNGLGDKAVELFEYMLTTEQKPDAVTFIAVLTGCSHSGLVDKAMAFFNSMEN 647

Query: 325 AHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVID 384
           ++G+ PL   ++ L  A G         ++  ++ K   + D I+   L+   A C V  
Sbjct: 648 SYGIIPLAEHYTCLIDALGRAGRF---VEVEALIHKMPCKDDPIIWEVLL---AACVVHH 701

Query: 385 NA 386
           NA
Sbjct: 702 NA 703


>gi|359484317|ref|XP_003633097.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
          Length = 1005

 Score =  323 bits (827), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 205/635 (32%), Positives = 330/635 (51%), Gaps = 63/635 (9%)

Query: 21  YSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMP--ERNVVSWT- 77
           Y+K G +  A+ +F  MP++N VS+NA+L+GF Q G   +   LF  M   E N   +T 
Sbjct: 274 YAKCGEMVLAERVFLCMPKQNAVSWNALLNGFAQMGDAEKVLNLFCRMTGSEINFSKFTL 333

Query: 78  -AMICGLADAGRV--------------CE---------------------ARKLFEEMPE 101
             ++ G A++G +              CE                     A K+F  + +
Sbjct: 334 STVLKGCANSGNLRAGQIVHSLAIRIGCELDEFISCCLVDMYSKCGLAGDALKVFVRIED 393

Query: 102 RNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCM------MGEAI 155
            +VVSW++++  L + G+  EA +VF  M    VI     +A  V           GE+I
Sbjct: 394 PDVVSWSAIITCLDQKGQSREAAEVFKRMRHSGVIPNQFTLASLVSAATDLGDLYYGESI 453

Query: 156 ---VLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGF 212
              V     E  N V   ++++ Y + G V++G  +F     ++++SW A++ GF  N  
Sbjct: 454 HACVCKYGFEYDNTVC-NALVTMYMKIGSVQDGCRVFEATTNRDLISWNALLSGFHDNET 512

Query: 213 HKESLLLFIEMKGICDNGNNCN-------VQSCNSMINGYIRFGRLEEAQNLFDTVPVRD 265
               L +F +M      G N N       ++SC+S+ +  +  G+   AQ + +++   D
Sbjct: 513 CDTGLRIFNQMLA---EGFNPNMYTFISILRSCSSLSD--VDLGKQVHAQIVKNSLDGND 567

Query: 266 EISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRA 325
            +  T+++D Y     + +A  +F+ +  RD  AWT +++G  Q+    +A   F++M+ 
Sbjct: 568 FVG-TALVDMYAKNRFLEDAETIFNRLIKRDLFAWTVIVAGYAQDGQGEKAVKCFIQMQR 626

Query: 326 HGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDN 385
            GV P   T +         A +D GRQ+H + +K     D+ + + L+ MYAKCG +++
Sbjct: 627 EGVKPNEFTLASSLSGCSRIATLDSGRQLHSMAIKAGQSGDMFVASALVDMYAKCGCVED 686

Query: 386 AYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSH 445
           A  +F  +VSRD VSWN+++ G+S HG   + LK FE+ML+ GT P+ VTF+G+LSACSH
Sbjct: 687 AEVVFDGLVSRDTVSWNTIICGYSQHGQGGKALKAFEAMLDEGTVPDEVTFIGVLSACSH 746

Query: 446 AGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWG 505
            GL+  G + FN++  +Y I P  EHY  M+++LGRAGK  E E F+  +    +  IW 
Sbjct: 747 MGLIEEGKKHFNSLSKIYGITPTIEHYACMVDILGRAGKFHEVESFIEEMKLTSNVLIWE 806

Query: 506 ALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLK 565
            +LGAC    GN E  E AA +L EL+P     +++L N++AA G   +   +R  M  +
Sbjct: 807 TVLGACKM-HGNIEFGERAAMKLFELEPEIDSNYILLSNMFAAKGMWDDVTNVRALMSTR 865

Query: 566 GVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEILL 600
           GV+K PGCSW+  NG + +FLS D    ++ EI L
Sbjct: 866 GVKKEPGCSWVEVNGQVHVFLSHDGSHPKIREIHL 900



 Score =  173 bits (438), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 119/430 (27%), Positives = 208/430 (48%), Gaps = 25/430 (5%)

Query: 45  YNAMLSGFLQNGRLSEARRLFEEM------PERNVVSWTAMICGLADAGRVCEARKLFEE 98
           Y+ ML      G L+E + +  ++      P+ ++  W +++   A  G    A K+F E
Sbjct: 131 YSGMLRTCASKGDLNEGKAIHGQVIKSGINPDSHL--WNSLVNVYAKCGSANYACKVFGE 188

Query: 99  MPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLF 158
           +PER+VVSW +++ G +  G  + A  +F  M  + V +     A  ++ C M   +   
Sbjct: 189 IPERDVVSWTALITGFVAEGYGSGAVNLFCEMRREGVEANEFTYATALKACSMCLDLEFG 248

Query: 159 EEMEER--------NVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWN 210
           +++           ++   ++++  Y + GE+     +F  MP++N VSW A++ GFA  
Sbjct: 249 KQVHAEAIKVGDFSDLFVGSALVDLYAKCGEMVLAERVFLCMPKQNAVSWNALLNGFAQM 308

Query: 211 GFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVR-----D 265
           G  ++ L LF  M G   +  N +  + ++++ G    G L   Q +  ++ +R     D
Sbjct: 309 GDAEKVLNLFCRMTG---SEINFSKFTLSTVLKGCANSGNLRAGQ-IVHSLAIRIGCELD 364

Query: 266 EISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRA 325
           E     ++D Y   G   +A  +F  + D D V+W+A+I+ L Q     EA  +F  MR 
Sbjct: 365 EFISCCLVDMYSKCGLAGDALKVFVRIEDPDVVSWSAIITCLDQKGQSREAAEVFKRMRH 424

Query: 326 HGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDN 385
            GV P   T + L  AA    ++  G  IH  + K   E D  + N L++MY K G + +
Sbjct: 425 SGVIPNQFTLASLVSAATDLGDLYYGESIHACVCKYGFEYDNTVCNALVTMYMKIGSVQD 484

Query: 386 AYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSH 445
              +F    +RDL+SWN+++ GF  +   +  L++F  ML  G +PN  TF+ IL +CS 
Sbjct: 485 GCRVFEATTNRDLISWNALLSGFHDNETCDTGLRIFNQMLAEGFNPNMYTFISILRSCSS 544

Query: 446 AGLVSRGWEL 455
              V  G ++
Sbjct: 545 LSDVDLGKQV 554



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 74/266 (27%), Positives = 137/266 (51%), Gaps = 7/266 (2%)

Query: 265 DEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMR 324
           D   W S+++ Y   G  + A  +F  +P+RD V+WTA+I+G V       A  LF EMR
Sbjct: 162 DSHLWNSLVNVYAKCGSANYACKVFGEIPERDVVSWTALITGFVAEGYGSGAVNLFCEMR 221

Query: 325 AHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVID 384
             GV     T++    A     +++ G+Q+H   +K    SDL + + L+ +YAKCG + 
Sbjct: 222 REGVEANEFTYATALKACSMCLDLEFGKQVHAEAIKVGDFSDLFVGSALVDLYAKCGEMV 281

Query: 385 NAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACS 444
            A  +F  M  ++ VSWN+++ GF+  G A + L +F  M  S  + +  T   +L  C+
Sbjct: 282 LAERVFLCMPKQNAVSWNALLNGFAQMGDAEKVLNLFCRMTGSEINFSKFTLSTVLKGCA 341

Query: 445 HAGLVSRGWELFNAMFDVYKIQPGPEHYVS--MINLLGRAGKIKEAEEFVLRLPFEPDHR 502
           ++G + R  ++ +++    +I    + ++S  ++++  + G   +A +  +R+  +PD  
Sbjct: 342 NSGNL-RAGQIVHSL--AIRIGCELDEFISCCLVDMYSKCGLAGDALKVFVRIE-DPDVV 397

Query: 503 IWGALLGACGFCEGNAEIAEHAAKRL 528
            W A++  C   +G +  A    KR+
Sbjct: 398 SWSAII-TCLDQKGQSREAAEVFKRM 422



 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 91/453 (20%), Positives = 192/453 (42%), Gaps = 66/453 (14%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVV--- 74
           +  YSK G   +A  +F  +   +VVS++A+++   Q G+  EA  +F+ M    V+   
Sbjct: 372 VDMYSKCGLAGDALKVFVRIEDPDVVSWSAIITCLDQKGQSREAAEVFKRMRHSGVIPNQ 431

Query: 75  -SWTAMICGLADAGRV--------CEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARK 125
            +  +++    D G +        C  +  FE     N V  N++V   ++ G + +  +
Sbjct: 432 FTLASLVSAATDLGDLYYGESIHACVCKYGFE---YDNTVC-NALVTMYMKIGSVQDGCR 487

Query: 126 VFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEM------------------------ 161
           VF +   +++ISWNA+++G+ +       + +F +M                        
Sbjct: 488 VFEATTNRDLISWNALLSGFHDNETCDTGLRIFNQMLAEGFNPNMYTFISILRSCSSLSD 547

Query: 162 ---------------EERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGG 206
                           + N    T+++  Y +   +E+   +F R+ ++++ +WT ++ G
Sbjct: 548 VDLGKQVHAQIVKNSLDGNDFVGTALVDMYAKNRFLEDAETIFNRLIKRDLFAWTVIVAG 607

Query: 207 FAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVR-- 264
           +A +G  ++++  FI+M+     G   N  +  S ++G  R   L+  + L  ++ ++  
Sbjct: 608 YAQDGQGEKAVKCFIQMQ---REGVKPNEFTLASSLSGCSRIATLDSGRQLH-SMAIKAG 663

Query: 265 ---DEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFM 321
              D    ++++D Y   G V +A  +F  +  RD V+W  +I G  Q+    +A   F 
Sbjct: 664 QSGDMFVASALVDMYAKCGCVEDAEVVFDGLVSRDTVSWNTIICGYSQHGQGGKALKAFE 723

Query: 322 EMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILE-NCLISMYAKC 380
            M   G  P   TF  +  A      I+ G++    L K    +  I    C++ +  + 
Sbjct: 724 AMLDEGTVPDEVTFIGVLSACSHMGLIEEGKKHFNSLSKIYGITPTIEHYACMVDILGRA 783

Query: 381 GVIDNAYNIFSNM-VSRDLVSWNSMVMGFSHHG 412
           G      +    M ++ +++ W +++     HG
Sbjct: 784 GKFHEVESFIEEMKLTSNVLIWETVLGACKMHG 816



 Score = 82.4 bits (202), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 101/485 (20%), Positives = 196/485 (40%), Gaps = 108/485 (22%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPER----NV 73
           +T Y K G + +   +F+    R+++S+NA+LSGF  N       R+F +M       N+
Sbjct: 473 VTMYMKIGSVQDGCRVFEATTNRDLISWNALLSGFHDNETCDTGLRIFNQMLAEGFNPNM 532

Query: 74  VSWTAMICGLA-----DAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFN 128
            ++ +++   +     D G+   A+ +   +   + V   ++V    +N  L +A  +FN
Sbjct: 533 YTFISILRSCSSLSDVDLGKQVHAQIVKNSLDGNDFVG-TALVDMYAKNRFLEDAETIFN 591

Query: 129 SMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNV----VTWTSMISGYCRAGEVEE 184
            +  +++ +W  ++AGY +     +A+  F +M+   V     T  S +SG  R   ++ 
Sbjct: 592 RLIKRDLFAWTVIVAGYAQDGQGEKAVKCFIQMQREGVKPNEFTLASSLSGCSRIATLDS 651

Query: 185 GYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMING 244
           G    R++    + +                              G + ++   +++++ 
Sbjct: 652 G----RQLHSMAIKA------------------------------GQSGDMFVASALVDM 677

Query: 245 YIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDR----DAVAW 300
           Y + G +E+A+ +FD +  RD +SW ++I GY   GQ   A   F  M D     D V +
Sbjct: 678 YAKCGCVEDAEVVFDGLVSRDTVSWNTIICGYSQHGQGGKALKAFEAMLDEGTVPDEVTF 737

Query: 301 TAMISGLVQNELFVEATYLFMEM-RAHGVPP---------------------------LN 332
             ++S      L  E    F  + + +G+ P                           + 
Sbjct: 738 IGVLSACSHMGLIEEGKKHFNSLSKIYGITPTIEHYACMVDILGRAGKFHEVESFIEEMK 797

Query: 333 ATFSVL-----FGAAGATANIDLGRQIHCVLMKTESESD---LILENCLISMYAKCGVID 384
            T +VL      GA     NI+ G +    L + E E D   ++L N    M+A  G+ D
Sbjct: 798 LTSNVLIWETVLGACKMHGNIEFGERAAMKLFELEPEIDSNYILLSN----MFAAKGMWD 853

Query: 385 NAYNIFSNMVSRDL-----VSW---NSMVMGFSHHGLANETLK--------VFESMLESG 428
           +  N+ + M +R +      SW   N  V  F  H  ++  ++        + + ++  G
Sbjct: 854 DVTNVRALMSTRGVKKEPGCSWVEVNGQVHVFLSHDGSHPKIREIHLKLQDLHQKLMSVG 913

Query: 429 THPNS 433
             PN+
Sbjct: 914 YTPNT 918



 Score = 62.4 bits (150), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 41/192 (21%), Positives = 95/192 (49%), Gaps = 12/192 (6%)

Query: 15  TSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNV- 73
           T+ +  Y+K  F+++A+ +F  + +R++ ++  +++G+ Q+G+  +A + F +M    V 
Sbjct: 571 TALVDMYAKNRFLEDAETIFNRLIKRDLFAWTVIVAGYAQDGQGEKAVKCFIQMQREGVK 630

Query: 74  ---VSWTAMICGLADAGRVCEARKL----FEEMPERNVVSWNSMVVGLIRNGELNEARKV 126
               +  + + G +    +   R+L     +     ++   +++V    + G + +A  V
Sbjct: 631 PNEFTLASSLSGCSRIATLDSGRQLHSMAIKAGQSGDMFVASALVDMYAKCGCVEDAEVV 690

Query: 127 FNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNV----VTWTSMISGYCRAGEV 182
           F+ +  ++ +SWN +I GY +    G+A+  FE M +       VT+  ++S     G +
Sbjct: 691 FDGLVSRDTVSWNTIICGYSQHGQGGKALKAFEAMLDEGTVPDEVTFIGVLSACSHMGLI 750

Query: 183 EEGYCLFRRMPR 194
           EEG   F  + +
Sbjct: 751 EEGKKHFNSLSK 762



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 45/190 (23%), Positives = 84/190 (44%), Gaps = 22/190 (11%)

Query: 14  LTSSITKYSKRGFIDEAKALFQLMPQR----NVVSYNAMLSGFLQNGRLSEARRLFEEMP 69
           L SS++  S+   +D  + L  +  +     ++   +A++  + + G + +A  +F+ + 
Sbjct: 636 LASSLSGCSRIATLDSGRQLHSMAIKAGQSGDMFVASALVDMYAKCGCVEDAEVVFDGLV 695

Query: 70  ERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRN----GELNEARK 125
            R+ VSW  +ICG +  G+  +A K FE M +   V      +G++      G + E +K
Sbjct: 696 SRDTVSWNTIICGYSQHGQGGKALKAFEAMLDEGTVPDEVTFIGVLSACSHMGLIEEGKK 755

Query: 126 VFNSMPIKNVISWNAMIAGYVECCMMG---------EAIVLFEEME-ERNVVTWTSMISG 175
            FNS+    +      I  Y   CM+          E     EEM+   NV+ W +++  
Sbjct: 756 HFNSL--SKIYGITPTIEHYA--CMVDILGRAGKFHEVESFIEEMKLTSNVLIWETVLGA 811

Query: 176 YCRAGEVEEG 185
               G +E G
Sbjct: 812 CKMHGNIEFG 821


>gi|328774759|gb|AEB39779.1| pentatricopeptide repeat protein 98 [Funaria hygrometrica]
          Length = 980

 Score =  322 bits (826), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 195/635 (30%), Positives = 338/635 (53%), Gaps = 56/635 (8%)

Query: 15  TSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNV- 73
           T+ I  + K G +D+A  +F  +P+R+++++ +M++G  ++ +  +A  LF+ M E  V 
Sbjct: 244 TALINMHIKCGGVDDALKVFNNLPRRDLITWTSMITGLARHRQFKQACNLFQVMEEEGVQ 303

Query: 74  ---VSWTAMICGLADAGRVCEARKLFEEMPE----RNVVSWNSMVVGLIRNGELNEARKV 126
              V++ +++        + + +++   M E      +    +++    + G + +A +V
Sbjct: 304 PDKVAFVSLLKACNHPEALEQGKRVHARMKEVGLDTEIYVGTALLSMYTKCGSMEDALEV 363

Query: 127 FNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEER----NVVTW------------- 169
           FN +  +NV+SW AMIAG+ +   M EA + F +M E     N VT+             
Sbjct: 364 FNLVKGRNVVSWTAMIAGFAQHGRMEEAFLFFNKMIESGIEPNRVTFMSILGACSRPSAL 423

Query: 170 ----------------------TSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGF 207
                                 T+++S Y + G + +   +F R+ ++NVV+W AMI  +
Sbjct: 424 KQGRQIHDRIIKAGYITDDRVRTALLSMYAKCGSLMDARNVFERISKQNVVAWNAMITAY 483

Query: 208 AWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEA---QNLFDTVPVR 264
             +  +  ++  F   + +   G   +  +  S++N       LE     Q+L       
Sbjct: 484 VQHEKYDNAVATF---QALLKEGIKPDSSTFTSILNVCKSPDALELGKWVQSLIIRAGFE 540

Query: 265 DEISW-TSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEM 323
            ++    +++  +++ G + +A  LF++MP+RD V+W  +I+G VQ+     A   F  M
Sbjct: 541 SDLHIRNALVSMFVNCGDLMSAMNLFNDMPERDLVSWNTIIAGFVQHGENQFAFDYFKMM 600

Query: 324 RAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVI 383
           +  GV P   TF+ L  A  +   +  GR++H ++ +   + D+++   LISMY KCG I
Sbjct: 601 QESGVKPDQITFTGLLNACASPEALTEGRRLHALITEAALDCDVVVGTGLISMYTKCGSI 660

Query: 384 DNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSAC 443
           D+A+ +F N+  +++ SW SM+ G++ HG   E L++F  M + G  P+ +TF+G LSAC
Sbjct: 661 DDAHLVFHNLPKKNVYSWTSMITGYAQHGRGKEALELFCQMQQEGVKPDWITFVGALSAC 720

Query: 444 SHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRI 503
           +HAGL+  G   F +M D + I+P  EHY  M++L GRAG + EA EF+ ++  +PD R+
Sbjct: 721 AHAGLIKEGLHHFESMKD-FNIEPRMEHYGCMVDLFGRAGLLHEAVEFINKMQVKPDSRL 779

Query: 504 WGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMG 563
           WGALLGAC     + E+AE  A++ LELDP +   +V+L NIYAA+G   E  K+R  M 
Sbjct: 780 WGALLGACQ-VHLDVELAEKVAQKKLELDPNDDGVYVILSNIYAAAGMWKEVTKMRKVML 838

Query: 564 LKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
            +GV K PG SW+  +G + +F S DK   Q+ EI
Sbjct: 839 DRGVVKKPGQSWIEVDGRVHIFCSDDKTHPQIEEI 873



 Score =  231 bits (588), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 148/530 (27%), Positives = 265/530 (50%), Gaps = 55/530 (10%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNV---- 73
           I+ Y+K G  + AK +F  MP ++V S+N +L G++Q+ R  EA RL E+M +  V    
Sbjct: 146 ISMYAKCGNTNSAKQIFDEMPDKDVYSWNLLLGGYVQHRRYEEAFRLHEQMVQDGVKPDK 205

Query: 74  VSWTAMICGLADAGRVCEARKLFEEMP----ERNVVSWNSMVVGLIRNGELNEARKVFNS 129
            ++  M+   ADA  V +  +LF  +     + ++    +++   I+ G +++A KVFN+
Sbjct: 206 YTFVYMLNACADAKNVDKGGELFSLILNAGWDTDLFVGTALINMHIKCGGVDDALKVFNN 265

Query: 130 MPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNV----------------------- 166
           +P +++I+W +MI G        +A  LF+ MEE  V                       
Sbjct: 266 LPRRDLITWTSMITGLARHRQFKQACNLFQVMEEEGVQPDKVAFVSLLKACNHPEALEQG 325

Query: 167 ----------------VTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWN 210
                              T+++S Y + G +E+   +F  +  +NVVSWTAMI GFA +
Sbjct: 326 KRVHARMKEVGLDTEIYVGTALLSMYTKCGSMEDALEVFNLVKGRNVVSWTAMIAGFAQH 385

Query: 211 GFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVP----VRDE 266
           G  +E+ L F +M    ++G   N  +  S++    R   L++ + + D +     + D+
Sbjct: 386 GRMEEAFLFFNKM---IESGIEPNRVTFMSILGACSRPSALKQGRQIHDRIIKAGYITDD 442

Query: 267 ISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAH 326
              T+++  Y   G + +A  +F  +  ++ VAW AMI+  VQ+E +  A   F  +   
Sbjct: 443 RVRTALLSMYAKCGSLMDARNVFERISKQNVVAWNAMITAYVQHEKYDNAVATFQALLKE 502

Query: 327 GVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNA 386
           G+ P ++TF+ +     +   ++LG+ +  ++++   ESDL + N L+SM+  CG + +A
Sbjct: 503 GIKPDSSTFTSILNVCKSPDALELGKWVQSLIIRAGFESDLHIRNALVSMFVNCGDLMSA 562

Query: 387 YNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHA 446
            N+F++M  RDLVSWN+++ GF  HG        F+ M ESG  P+ +TF G+L+AC+  
Sbjct: 563 MNLFNDMPERDLVSWNTIIAGFVQHGENQFAFDYFKMMQESGVKPDQITFTGLLNACASP 622

Query: 447 GLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLP 496
             ++ G  L +A+     +         +I++  + G I +A      LP
Sbjct: 623 EALTEGRRL-HALITEAALDCDVVVGTGLISMYTKCGSIDDAHLVFHNLP 671



 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 108/422 (25%), Positives = 207/422 (49%), Gaps = 19/422 (4%)

Query: 102 RNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMM------GEAI 155
           +N    N+ +  L + G+L+EA  V  S+   ++       +  ++ C+       GE I
Sbjct: 67  KNTQRANAFLNRLSKAGQLSEAMLVLLSVDSPHIQIHRQTYSSLLQLCIKHKNLGDGERI 126

Query: 156 ---VLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGF 212
              + F +++  ++  W  +IS Y + G       +F  MP K+V SW  ++GG+  +  
Sbjct: 127 HNHIKFSKIQP-DIFMWNMLISMYAKCGNTNSAKQIFDEMPDKDVYSWNLLLGGYVQHRR 185

Query: 213 HKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVP----VRDEIS 268
           ++E+  L  +M     +G   +  +   M+N       +++   LF  +       D   
Sbjct: 186 YEEAFRLHEQM---VQDGVKPDKYTFVYMLNACADAKNVDKGGELFSLILNAGWDTDLFV 242

Query: 269 WTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGV 328
            T++I+ ++  G V +A  +F+N+P RD + WT+MI+GL ++  F +A  LF  M   GV
Sbjct: 243 GTALINMHIKCGGVDDALKVFNNLPRRDLITWTSMITGLARHRQFKQACNLFQVMEEEGV 302

Query: 329 PPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYN 388
            P    F  L  A      ++ G+++H  + +   ++++ +   L+SMY KCG +++A  
Sbjct: 303 QPDKVAFVSLLKACNHPEALEQGKRVHARMKEVGLDTEIYVGTALLSMYTKCGSMEDALE 362

Query: 389 IFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGL 448
           +F+ +  R++VSW +M+ GF+ HG   E    F  M+ESG  PN VTF+ IL ACS    
Sbjct: 363 VFNLVKGRNVVSWTAMIAGFAQHGRMEEAFLFFNKMIESGIEPNRVTFMSILGACSRPSA 422

Query: 449 VSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALL 508
           + +G ++ + +     I        +++++  + G + +A     R+  + +   W A++
Sbjct: 423 LKQGRQIHDRIIKAGYITDDRVR-TALLSMYAKCGSLMDARNVFERIS-KQNVVAWNAMI 480

Query: 509 GA 510
            A
Sbjct: 481 TA 482


>gi|222617563|gb|EEE53695.1| hypothetical protein OsJ_00010 [Oryza sativa Japonica Group]
          Length = 1008

 Score =  322 bits (825), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 201/636 (31%), Positives = 318/636 (50%), Gaps = 67/636 (10%)

Query: 25  GFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLA 84
           G +  A+A+F  MP +N+ S N +LS +  +G L  A+ LF   P RN  +WT M+   A
Sbjct: 271 GHLHRARAMFDQMPHKNIFSLNLILSAYSSSGDLPAAQHLFLSSPHRNATTWTIMMRAHA 330

Query: 85  DAGRVCEARKLFEEM------PERNVVSW----------------------------NSM 110
            AGR  +A  LF  M      P+R  V+                             N++
Sbjct: 331 AAGRTSDALSLFRAMLGEGVIPDRVTVTTVLNLPGCTVPSLHPFAIKFGLDTHVFVCNTL 390

Query: 111 VVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEER------ 164
           +    ++G L  AR+VF  M  K+ +++NAM+ G  +  +  +A+ LF  M         
Sbjct: 391 LDAYCKHGLLAAARRVFLEMHDKDAVTYNAMMMGCSKEGLHTQALQLFAAMRRAGYSRHP 450

Query: 165 -----------------NVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGF 207
                            NV    S++  Y +   +++   LF  MP ++ VS+  +I  +
Sbjct: 451 LHLLQYSHSRSRSTSVLNVFVNNSLLDFYSKCDCLDDMRRLFDEMPERDNVSYNVIIAAY 510

Query: 208 AWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMIN-----GYIRFGRLEEAQNLFDTVP 262
           AWN      L LF EM+ +   G +  V    +M++       +  G+   AQ +   + 
Sbjct: 511 AWNQCAATVLRLFREMQKL---GFDRQVLPYATMLSVAGSLPDVHIGKQIHAQLVLLGLA 567

Query: 263 VRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFME 322
             D +   ++ID Y   G +  A   F N  ++ A++WTA+I+G VQN    EA  LF +
Sbjct: 568 SEDLLG-NALIDMYSKCGMLDAAKSNFSNRSEKSAISWTALITGYVQNGQHEEALQLFSD 626

Query: 323 MRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGV 382
           MR  G+ P  ATFS +  A+ + A I LGRQ+H  L+++  +S +   + L+ MYAKCG 
Sbjct: 627 MRRAGLRPDRATFSSIIKASSSLAMIGLGRQLHSYLIRSGYKSSVFSGSVLVDMYAKCGC 686

Query: 383 IDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSA 442
           +D A   F  M  R+ +SWN+++  ++H+G A   +K+FE ML  G +P+SVTFL +L+A
Sbjct: 687 LDEALRTFDEMPERNSISWNAVISAYAHYGEAKNAIKMFEGMLHCGFNPDSVTFLSVLAA 746

Query: 443 CSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHR 502
           CSH GL     + F+ M   Y I P  EHY  +I+ LGR G   + ++ ++ +PF+ D  
Sbjct: 747 CSHNGLADECMKYFHLMKHQYSISPWKEHYACVIDTLGRVGCFSQVQKMLVEMPFKADPI 806

Query: 503 IWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDM 562
           IW ++L +C    GN E+A  AA +L  ++P +A  +V+L NIYA +G+  +   ++  M
Sbjct: 807 IWTSILHSCRI-HGNQELARVAADKLFGMEPTDATPYVILSNIYARAGQWEDAACVKKIM 865

Query: 563 GLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
             +GVRK  G SW+     I  F S D     + EI
Sbjct: 866 RDRGVRKESGYSWVEIKQKIYSFASNDLTSPMIDEI 901



 Score = 62.8 bits (151), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 58/221 (26%), Positives = 103/221 (46%), Gaps = 21/221 (9%)

Query: 4   RNHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARR 63
           R+  KS V   +  +  Y+K G +DEA   F  MP+RN +S+NA++S +   G    A +
Sbjct: 664 RSGYKSSVFSGSVLVDMYAKCGCLDEALRTFDEMPERNSISWNAVISAYAHYGEAKNAIK 723

Query: 64  LFEEMPE----RNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVS-----WNSMVVGL 114
           +FE M       + V++ +++   +  G   E  K F  M  +  +S     +  ++  L
Sbjct: 724 MFEGMLHCGFNPDSVTFLSVLAACSHNGLADECMKYFHLMKHQYSISPWKEHYACVIDTL 783

Query: 115 IRNGELNEARKVFNSMPIK-NVISWNAM-----IAGYVECCMMGEAIVLFEEMEERNVVT 168
            R G  ++ +K+   MP K + I W ++     I G  E   +  A  LF  ME  +   
Sbjct: 784 GRVGCFSQVQKMLVEMPFKADPIIWTSILHSCRIHGNQELARVA-ADKLF-GMEPTDATP 841

Query: 169 WTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAW 209
           +  + + Y RAG+ E+  C+ + M  + V   +    G++W
Sbjct: 842 YVILSNIYARAGQWEDAACVKKIMRDRGVRKES----GYSW 878


>gi|449456490|ref|XP_004145982.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09040,
           mitochondrial-like [Cucumis sativus]
          Length = 710

 Score =  322 bits (825), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 203/647 (31%), Positives = 336/647 (51%), Gaps = 75/647 (11%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNV---- 73
           I+++ + G +D A+ LF  MP R+VVS+N M+SG+ + G+ SEA  L  EM   NV    
Sbjct: 44  ISRHVRDGHLDLAQTLFNEMPVRSVVSWNIMISGYSKFGKYSEALNLASEMHCNNVKLNE 103

Query: 74  VSWTAMICGLADAGRVCEARKLFEEMPERNVVSW----NSMVVGLIRNGELNEARKVFNS 129
            ++++++   A +G   E ++    + +  +  +    +++V       +++ A++VF+ 
Sbjct: 104 TTFSSLLSICAHSGCSSEGKQFHCLVLKSGLQIFERVGSALVYFYANINDISGAKQVFDE 163

Query: 130 MPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRA---------- 179
           +  KN + W+ ++ GYV+C +M +A+ LF ++  R+VV WT+MIS Y R+          
Sbjct: 164 LHDKNDLLWDLLLVGYVKCNLMDDALDLFMKIPTRDVVAWTTMISAYARSEHNCKRGLEL 223

Query: 180 -------GEVEEGYCLF----RRMPRKNVVSWTAMIGGFAWN-GFHKE-----SLLLFI- 221
                  GEVE     F    R   R   +SW  ++ G     GFH +     +L+LF  
Sbjct: 224 FCSMRMNGEVEPNEFTFDSVVRACGRMRYLSWGKVVHGILTKYGFHFDHSVCSALILFYC 283

Query: 222 ------EMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDG 275
                   K + D+     +++ NS++ G I  GR+ +A+ +F  +  ++ +S+  M+ G
Sbjct: 284 QCEAIDNAKAVYDSMERPCLKASNSLLEGLIFAGRINDAEEIFCKLREKNPVSYNLMLKG 343

Query: 276 YLSVGQVSNAYYLFHNMPDR--------------------------------DAVAWTAM 303
           Y + G++  +  LF  M  +                                D V W +M
Sbjct: 344 YATSGRIEGSKRLFERMTHKTTSSLNTMISVYSRNGEIDKAFKLFESVKSEGDPVTWNSM 403

Query: 304 ISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTES 363
           ISG +QN     A  L++ M    V    +TFS LF A      I LG+ +H   ++   
Sbjct: 404 ISGCIQNHQHEGALKLYITMCRTSVERSRSTFSALFQACTCLEYIQLGQALHVHAIREAF 463

Query: 364 ESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFES 423
           +S++ +   LI MYAKCG I +A   F+++   ++ ++ +++ G+ HHGL  E   VF+ 
Sbjct: 464 DSNVYVGTSLIDMYAKCGSIYDAQTSFASVCFPNVAAFTALINGYVHHGLGIEAFSVFDE 523

Query: 424 MLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAG 483
           ML+    PN  T LGILSACS AG+V  G  +F++M   Y + P  EHY  +++LLGR+G
Sbjct: 524 MLKHKVPPNGATLLGILSACSCAGMVKEGMTVFHSMEKCYGVIPTLEHYACVVDLLGRSG 583

Query: 484 KIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLC 543
           ++ EAE F+  +P E D  IWGALL AC F   + E+ E  AK++L LDP    A+++L 
Sbjct: 584 RLYEAEAFIRCMPIEADRVIWGALLNACWF-WMDLELGESVAKKVLSLDPKAISAYIILS 642

Query: 544 NIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDK 590
           NIYA  G+ VE+  +R  +    V+K+ GCSW+  N    +F +GD+
Sbjct: 643 NIYAKLGKWVEKINVRRQLMSLKVKKIRGCSWIDVNNKTCVFSAGDR 689



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 99/386 (25%), Positives = 168/386 (43%), Gaps = 47/386 (12%)

Query: 162 EERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFI 221
           E  N+++    IS + R G ++    LF  MP ++VVSW  MI G++  G + E+L L  
Sbjct: 33  ENSNIISTNIYISRHVRDGHLDLAQTLFNEMPVRSVVSWNIMISGYSKFGKYSEALNLAS 92

Query: 222 EMKGICDNG-----------NNCNVQSCNS-----------------------MINGYIR 247
           EM   C+N            + C    C+S                       ++  Y  
Sbjct: 93  EMH--CNNVKLNETTFSSLLSICAHSGCSSEGKQFHCLVLKSGLQIFERVGSALVYFYAN 150

Query: 248 FGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGL 307
              +  A+ +FD +  ++++ W  ++ GY+    + +A  LF  +P RD VAWT MIS  
Sbjct: 151 INDISGAKQVFDELHDKNDLLWDLLLVGYVKCNLMDDALDLFMKIPTRDVVAWTTMISAY 210

Query: 308 VQNELFVE-ATYLFMEMRAHG-VPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESES 365
            ++E   +    LF  MR +G V P   TF  +  A G    +  G+ +H +L K     
Sbjct: 211 ARSEHNCKRGLELFCSMRMNGEVEPNEFTFDSVVRACGRMRYLSWGKVVHGILTKYGFHF 270

Query: 366 DLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESML 425
           D  + + LI  Y +C  IDNA  ++ +M    L + NS++ G    G  N+  ++F  + 
Sbjct: 271 DHSVCSALILFYCQCEAIDNAKAVYDSMERPCLKASNSLLEGLIFAGRINDAEEIFCKLR 330

Query: 426 ESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKI 485
           E     N V++  +L   + +G +     LF  M              +MI++  R G+I
Sbjct: 331 E----KNPVSYNLMLKGYATSGRIEGSKRLFERM-----THKTTSSLNTMISVYSRNGEI 381

Query: 486 KEAEEFVLRLPFEPDHRIWGALLGAC 511
            +A +    +  E D   W +++  C
Sbjct: 382 DKAFKLFESVKSEGDPVTWNSMISGC 407



 Score = 58.5 bits (140), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 35/97 (36%), Positives = 53/97 (54%), Gaps = 1/97 (1%)

Query: 356 CVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLAN 415
           C  + TE+ S++I  N  IS + + G +D A  +F+ M  R +VSWN M+ G+S  G  +
Sbjct: 27  CEGLHTEN-SNIISTNIYISRHVRDGHLDLAQTLFNEMPVRSVVSWNIMISGYSKFGKYS 85

Query: 416 ETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRG 452
           E L +   M  +    N  TF  +LS C+H+G  S G
Sbjct: 86  EALNLASEMHCNNVKLNETTFSSLLSICAHSGCSSEG 122


>gi|449527015|ref|XP_004170508.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09040,
           mitochondrial-like [Cucumis sativus]
          Length = 710

 Score =  322 bits (825), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 203/647 (31%), Positives = 336/647 (51%), Gaps = 75/647 (11%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNV---- 73
           I+++ + G +D A+ LF  MP R+VVS+N M+SG+ + G+ SEA  L  EM   NV    
Sbjct: 44  ISRHVRDGHLDLAQTLFNEMPVRSVVSWNIMISGYSKFGKYSEALNLASEMHCNNVKLNE 103

Query: 74  VSWTAMICGLADAGRVCEARKLFEEMPERNVVSW----NSMVVGLIRNGELNEARKVFNS 129
            ++++++   A +G   E ++    + +  +  +    +++V       +++ A++VF+ 
Sbjct: 104 TTFSSLLSICAHSGCSSEGKQFHCLVLKSGLQIFERVGSALVYFYANINDISGAKQVFDE 163

Query: 130 MPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRA---------- 179
           +  KN + W+ ++ GYV+C +M +A+ LF ++  R+VV WT+MIS Y R+          
Sbjct: 164 LHDKNDLLWDLLLVGYVKCNLMDDALDLFMKIPTRDVVAWTTMISAYARSEHNCKRGLEL 223

Query: 180 -------GEVEEGYCLF----RRMPRKNVVSWTAMIGGFAWN-GFHKE-----SLLLFI- 221
                  GEVE     F    R   R   +SW  ++ G     GFH +     +L+LF  
Sbjct: 224 FCSMRMNGEVEPNEFTFDSVVRACGRMRYLSWGKVVHGILTKYGFHFDHSVCSALILFYC 283

Query: 222 ------EMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDG 275
                   K + D+     +++ NS++ G I  GR+ +A+ +F  +  ++ +S+  M+ G
Sbjct: 284 QCEAIDSAKAVYDSMERPCLKASNSLLEGLIFAGRINDAEEIFCKLREKNPVSYNLMLKG 343

Query: 276 YLSVGQVSNAYYLFHNMPDR--------------------------------DAVAWTAM 303
           Y + G++  +  LF  M  +                                D V W +M
Sbjct: 344 YATSGRIEGSKRLFERMTHKTTSSLNTMISVYSRNGEIDKAFKLFESVKSEGDPVTWNSM 403

Query: 304 ISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTES 363
           ISG +QN     A  L++ M    V    +TFS LF A      I LG+ +H   ++   
Sbjct: 404 ISGYIQNHQHEGALKLYITMCRTSVERSRSTFSALFQACTCLEYIQLGQALHVHAIREAF 463

Query: 364 ESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFES 423
           +S++ +   LI MYAKCG I +A   F+++   ++ ++ +++ G+ HHGL  E   VF+ 
Sbjct: 464 DSNVYVGTSLIDMYAKCGSIYDAQTSFASVCLPNVAAFTALINGYVHHGLGIEAFSVFDE 523

Query: 424 MLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAG 483
           ML+    PN  T LGILSACS AG+V  G  +F++M   Y + P  EHY  +++LLGR+G
Sbjct: 524 MLKHKVPPNGATLLGILSACSCAGMVKEGMTVFHSMEKCYGVIPTLEHYACVVDLLGRSG 583

Query: 484 KIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLC 543
           ++ EAE F+  +P E D  IWGALL AC F   + E+ E  AK++L LDP    A+++L 
Sbjct: 584 RLYEAEAFIRCMPIEADRVIWGALLNACWFWM-DLELGESVAKKVLSLDPKAISAYIILS 642

Query: 544 NIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDK 590
           NIYA  G+ VE+  +R  +    V+K+ GCSW+  N    +F +GD+
Sbjct: 643 NIYAKLGKWVEKINVRRKLMSLKVKKIRGCSWIDVNNKTCVFSAGDR 689



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 97/383 (25%), Positives = 167/383 (43%), Gaps = 47/383 (12%)

Query: 162 EERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFI 221
           E  N+++    IS + R G ++    LF  MP ++VVSW  MI G++  G + E+L L  
Sbjct: 33  ENSNIISTNIYISRHVRDGHLDLAQTLFNEMPVRSVVSWNIMISGYSKFGKYSEALNLAS 92

Query: 222 EMKGICDNG-----------NNCNVQSCNS-----------------------MINGYIR 247
           EM   C+N            + C    C+S                       ++  Y  
Sbjct: 93  EMH--CNNVKLNETTFSSLLSICAHSGCSSEGKQFHCLVLKSGLQIFERVGSALVYFYAN 150

Query: 248 FGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGL 307
              +  A+ +FD +  ++++ W  ++ GY+    + +A  LF  +P RD VAWT MIS  
Sbjct: 151 INDISGAKQVFDELHDKNDLLWDLLLVGYVKCNLMDDALDLFMKIPTRDVVAWTTMISAY 210

Query: 308 VQNELFVE-ATYLFMEMRAHG-VPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESES 365
            ++E   +    LF  MR +G V P   TF  +  A G    +  G+ +H +L K     
Sbjct: 211 ARSEHNCKRGLELFCSMRMNGEVEPNEFTFDSVVRACGRMRYLSWGKVVHGILTKYGFHF 270

Query: 366 DLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESML 425
           D  + + LI  Y +C  ID+A  ++ +M    L + NS++ G    G  N+  ++F  + 
Sbjct: 271 DHSVCSALILFYCQCEAIDSAKAVYDSMERPCLKASNSLLEGLIFAGRINDAEEIFCKLR 330

Query: 426 ESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKI 485
           E     N V++  +L   + +G +     LF  M              +MI++  R G+I
Sbjct: 331 E----KNPVSYNLMLKGYATSGRIEGSKRLFERM-----THKTTSSLNTMISVYSRNGEI 381

Query: 486 KEAEEFVLRLPFEPDHRIWGALL 508
            +A +    +  E D   W +++
Sbjct: 382 DKAFKLFESVKSEGDPVTWNSMI 404



 Score = 58.5 bits (140), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 35/97 (36%), Positives = 53/97 (54%), Gaps = 1/97 (1%)

Query: 356 CVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLAN 415
           C  + TE+ S++I  N  IS + + G +D A  +F+ M  R +VSWN M+ G+S  G  +
Sbjct: 27  CEGLHTEN-SNIISTNIYISRHVRDGHLDLAQTLFNEMPVRSVVSWNIMISGYSKFGKYS 85

Query: 416 ETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRG 452
           E L +   M  +    N  TF  +LS C+H+G  S G
Sbjct: 86  EALNLASEMHCNNVKLNETTFSSLLSICAHSGCSSEG 122


>gi|113205417|gb|AAU90328.2| Pentatricopeptide repeat domain containing protein, putative
           [Solanum demissum]
          Length = 819

 Score =  322 bits (824), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 198/653 (30%), Positives = 324/653 (49%), Gaps = 83/653 (12%)

Query: 27  IDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADA 86
           I +A+ LF  MP RN  S N M+SG++++  L  AR LFE M  RN VSWT MI G +  
Sbjct: 62  IAKARQLFDEMPYRNTSSVNMMVSGYVKSRNLFRARELFESMFSRNEVSWTIMIGGYSQN 121

Query: 87  GRVCEARKLFEEM------PER---------------------------------NVVSW 107
            +  EA  L+ EM      P+                                  +++ +
Sbjct: 122 NQPKEAFNLYTEMCRSGVKPDHITFATLLSGFDDTTTLKEVLQIHSHIIRFGFSASLIVF 181

Query: 108 NSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEE---- 163
           NS+V    +   L+ A ++F+ MP K+ +S+N MI GY +     EA+ LF +M      
Sbjct: 182 NSLVDSYCKTCCLDIASQLFSEMPTKDSVSFNVMITGYTKYGFREEALKLFMQMRNMDFQ 241

Query: 164 ------------------------------RNVVTW-----TSMISGYCRAGEVEEGYCL 188
                                         +    W      +++  Y +   ++    L
Sbjct: 242 PSGFTFAAMLGMSVGSEDVIFGQQIHGLAIKTSYVWDIFVANALLDFYSKHDYIDLAKNL 301

Query: 189 FRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSM--INGYI 246
           F  MP  + VS+  +I G+AWNG +++S  LF  ++G   +  N    +  S+  I   +
Sbjct: 302 FDEMPELDGVSYNIIITGYAWNGQYEKSFDLFKRLQGTSFDRKNFPFATMLSVAAIELNL 361

Query: 247 RFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISG 306
             GR   AQ +  T     ++   +++D Y    +  +A  +F N+  R++V WTA+IS 
Sbjct: 362 SMGRQTHAQAVVTTAVSEVQVG-NALVDMYAKCEKFEDANRIFANLAYRNSVPWTAIISI 420

Query: 307 LVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESD 366
            VQ     EA  +F EM    V    ATF+    A+   A++ LG+Q+H  +++    S 
Sbjct: 421 YVQKGFHEEALKMFKEMNRENVHGDQATFASTLKASANLASVSLGKQLHSSVIRLGLLSS 480

Query: 367 LILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLE 426
           +   + L+ MYA CG + +A  +F  M  R++V WN+++  +S +G A  T   F  M+E
Sbjct: 481 VFSGSVLVDMYANCGSMKDAIEVFKEMPDRNIVCWNALISAYSQNGDAEATFSSFADMIE 540

Query: 427 SGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIK 486
           SG +P+SV+FL +L+ACSH GLV +    FN+M  VYK+ P  +HY +MI++L R+G+  
Sbjct: 541 SGLYPDSVSFLSVLTACSHRGLVEKALWYFNSMTQVYKLDPRRKHYATMIDVLCRSGRFN 600

Query: 487 EAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPL-NAPAHVVLCNI 545
           EAE  +  +PFEPD  +W ++L +C     N ++A+ AA +L ++D L +A A+V + NI
Sbjct: 601 EAENLISEMPFEPDEVMWSSVLNSCRI-HKNQDLAKKAADQLFKMDALRDAAAYVNMSNI 659

Query: 546 YAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
           YA +G+     K++  M  +GV+KV   SW+  +  + +F + D+   Q  +I
Sbjct: 660 YAEAGKWENAAKVKKAMRERGVKKVTAYSWVEIDHRVHVFTANDRTHPQTEQI 712



 Score =  188 bits (477), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 131/491 (26%), Positives = 237/491 (48%), Gaps = 20/491 (4%)

Query: 42  VVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPE 101
           +  +N  L   ++  ++++AR+LF+EMP RN  S   M+ G   +  +  AR+LFE M  
Sbjct: 46  ISRFNFKLKDLVRANQIAKARQLFDEMPYRNTSSVNMMVSGYVKSRNLFRARELFESMFS 105

Query: 102 RNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNV----ISWNAMIAGYVECCMMGEAIVL 157
           RN VSW  M+ G  +N +  EA  ++  M    V    I++  +++G+ +   + E + +
Sbjct: 106 RNEVSWTIMIGGYSQNNQPKEAFNLYTEMCRSGVKPDHITFATLLSGFDDTTTLKEVLQI 165

Query: 158 FEEMEE----RNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFH 213
              +       +++ + S++  YC+   ++    LF  MP K+ VS+  MI G+   GF 
Sbjct: 166 HSHIIRFGFSASLIVFNSLVDSYCKTCCLDIASQLFSEMPTKDSVSFNVMITGYTKYGFR 225

Query: 214 KESLLLFIEMKGICDNGNNCNVQSCNSMINGY--IRFGRLEEAQNL-FDTVPVRDEISWT 270
           +E+L LF++M+ +    +     +   M  G   + FG  ++   L   T  V D     
Sbjct: 226 EEALKLFMQMRNMDFQPSGFTFAAMLGMSVGSEDVIFG--QQIHGLAIKTSYVWDIFVAN 283

Query: 271 SMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPP 330
           +++D Y     +  A  LF  MP+ D V++  +I+G   N  + ++  LF  ++      
Sbjct: 284 ALLDFYSKHDYIDLAKNLFDEMPELDGVSYNIIITGYAWNGQYEKSFDLFKRLQGTSFDR 343

Query: 331 LNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIF 390
            N  F+ +   A    N+ +GRQ H   + T + S++ + N L+ MYAKC   ++A  IF
Sbjct: 344 KNFPFATMLSVAAIELNLSMGRQTHAQAVVTTAVSEVQVGNALVDMYAKCEKFEDANRIF 403

Query: 391 SNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVS 450
           +N+  R+ V W +++  +   G   E LK+F+ M     H +  TF   L A ++   VS
Sbjct: 404 ANLAYRNSVPWTAIISIYVQKGFHEEALKMFKEMNRENVHGDQATFASTLKASANLASVS 463

Query: 451 RGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRI--WGALL 508
            G +L +++  +  +       V ++++    G +K+A E    +   PD  I  W AL+
Sbjct: 464 LGKQLHSSVIRLGLLSSVFSGSV-LVDMYANCGSMKDAIEVFKEM---PDRNIVCWNALI 519

Query: 509 GACGFCEGNAE 519
            A     G+AE
Sbjct: 520 SAYS-QNGDAE 529



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 77/253 (30%), Positives = 119/253 (47%), Gaps = 15/253 (5%)

Query: 226 ICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNA 285
           I   G +  +   N  +   +R  ++ +A+ LFD +P R+  S   M+ GY+    +  A
Sbjct: 37  IVKTGFDPEISRFNFKLKDLVRANQIAKARQLFDEMPYRNTSSVNMMVSGYVKSRNLFRA 96

Query: 286 YYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGAT 345
             LF +M  R+ V+WT MI G  QN    EA  L+ EM   GV P + TF+ L      T
Sbjct: 97  RELFESMFSRNEVSWTIMIGGYSQNNQPKEAFNLYTEMCRSGVKPDHITFATLLSGFDDT 156

Query: 346 ANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMV 405
             +    QIH  +++    + LI+ N L+  Y K   +D A  +FS M ++D VS+N M+
Sbjct: 157 TTLKEVLQIHSHIIRFGFSASLIVFNSLVDSYCKTCCLDIASQLFSEMPTKDSVSFNVMI 216

Query: 406 MGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRG------------- 452
            G++ +G   E LK+F  M      P+  TF  +L     +  V  G             
Sbjct: 217 TGYTKYGFREEALKLFMQMRNMDFQPSGFTFAAMLGMSVGSEDVIFGQQIHGLAIKTSYV 276

Query: 453 WELF--NAMFDVY 463
           W++F  NA+ D Y
Sbjct: 277 WDIFVANALLDFY 289



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 99/385 (25%), Positives = 168/385 (43%), Gaps = 62/385 (16%)

Query: 9   SLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEM 68
           SL+V   S +  Y K   +D A  LF  MP ++ VS+N M++G+ + G   EA +LF +M
Sbjct: 177 SLIV-FNSLVDSYCKTCCLDIASQLFSEMPTKDSVSFNVMITGYTKYGFREEALKLFMQM 235

Query: 69  PERNV------VSWTAM---------------ICGLA--------------------DAG 87
             RN+       ++ AM               I GLA                       
Sbjct: 236 --RNMDFQPSGFTFAAMLGMSVGSEDVIFGQQIHGLAIKTSYVWDIFVANALLDFYSKHD 293

Query: 88  RVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVE 147
            +  A+ LF+EMPE + VS+N ++ G   NG+  ++  +F  +   +    N   A  + 
Sbjct: 294 YIDLAKNLFDEMPELDGVSYNIIITGYAWNGQYEKSFDLFKRLQGTSFDRKNFPFATMLS 353

Query: 148 CCMMGEAIVLFEEMEERNVVTWT--------SMISGYCRAGEVEEGYCLFRRMPRKNVVS 199
              +   + +  +   + VVT          +++  Y +  + E+   +F  +  +N V 
Sbjct: 354 VAAIELNLSMGRQTHAQAVVTTAVSEVQVGNALVDMYAKCEKFEDANRIFANLAYRNSVP 413

Query: 200 WTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFD 259
           WTA+I  +   GFH+E+L +F EM     +G+     S    +        +   + L  
Sbjct: 414 WTAIISIYVQKGFHEEALKMFKEMNRENVHGDQATFAST---LKASANLASVSLGKQLHS 470

Query: 260 TVP----VRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVE 315
           +V     +    S + ++D Y + G + +A  +F  MPDR+ V W A+IS   QN    E
Sbjct: 471 SVIRLGLLSSVFSGSVLVDMYANCGSMKDAIEVFKEMPDRNIVCWNALISAYSQNGD-AE 529

Query: 316 ATY-LFMEMRAHGVPPLNATF-SVL 338
           AT+  F +M   G+ P + +F SVL
Sbjct: 530 ATFSSFADMIESGLYPDSVSFLSVL 554


>gi|356557757|ref|XP_003547177.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
            chloroplastic-like [Glycine max]
          Length = 1227

 Score =  322 bits (824), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 193/607 (31%), Positives = 316/607 (52%), Gaps = 35/607 (5%)

Query: 18   ITKYSKRGFIDEAKALFQLMPQR----NVVSYNAMLSGFLQNGRLSEARRLFEEMPERNV 73
            +++Y+K G   E+  LF+ M +     N  +++ +L  F   GR+ E +R+   + +   
Sbjct: 525  MSEYAKIGDYRESIYLFKKMQKLGITGNSYTFSCILKCFATLGRVGECKRIHGCVYKLGF 584

Query: 74   VSWTAMICGLA----DAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNS 129
             S+  ++  L      +G V  A KLF+E+ +R+VVSWNSM+ G + NG  + A + F  
Sbjct: 585  GSYNTVVNSLIATYFKSGEVDSAHKLFDELGDRDVVSWNSMISGCVMNGFSHSALEFFVQ 644

Query: 130  MPIKNVISWNAMIAGYVECCMMGEAIVLFEEME--------ERNVVTWTSMISGYCRAGE 181
            M I  V    A +   V  C    ++ L   +          R V+   +++  Y + G 
Sbjct: 645  MLILRVGVDLATLVNSVAACANVGSLSLGRALHGQGVKACFSREVMFNNTLLDMYSKCGN 704

Query: 182  VEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSM 241
            + +    F +M +K VVSWT++I  +   G + +++ LF EM+     G + +V S  S+
Sbjct: 705  LNDAIQAFEKMGQKTVVSWTSLIAAYVREGLYDDAIRLFYEMES---KGVSPDVYSMTSV 761

Query: 242  INGYIRFGRLEEAQNLFDTV---------PVRDEISWTSMIDGYLSVGQVSNAYYLFHNM 292
            ++       L++ +++ + +         PV +     +++D Y   G +  AY +F  +
Sbjct: 762  LHACACGNSLDKGRDVHNYIRKNNMALCLPVSN-----ALMDMYAKCGSMEEAYLVFSQI 816

Query: 293  PDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGR 352
            P +D V+W  MI G  +N L  EA  LF EM+    P    T + L  A G+ A +++GR
Sbjct: 817  PVKDIVSWNTMIGGYSKNSLPNEALKLFAEMQKESRPD-GITMACLLPACGSLAALEIGR 875

Query: 353  QIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHG 412
             IH  +++    S+L + N LI MY KCG + +A  +F  +  +DL++W  M+ G   HG
Sbjct: 876  GIHGCILRNGYSSELHVANALIDMYVKCGSLVHARLLFDMIPEKDLITWTVMISGCGMHG 935

Query: 413  LANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHY 472
            L NE +  F+ M  +G  P+ +TF  IL ACSH+GL++ GW  FN+M     ++P  EHY
Sbjct: 936  LGNEAIATFQKMRIAGIKPDEITFTSILYACSHSGLLNEGWGFFNSMISECNMEPKLEHY 995

Query: 473  VSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELD 532
              M++LL R G + +A   +  +P +PD  IWGALL  C     + E+AE  A+ + EL+
Sbjct: 996  ACMVDLLARTGNLSKAYNLIETMPIKPDATIWGALLCGCRI-HHDVELAEKVAEHVFELE 1054

Query: 533  PLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIP 592
            P NA  +V+L NIYA + +  E  KLR  +G +G++K PGCSW+   G    F+S D   
Sbjct: 1055 PDNAGYYVLLANIYAEAEKWEEVKKLRERIGKRGLKKSPGCSWIEVQGKFTTFVSADTAH 1114

Query: 593  AQVAEIL 599
             Q   I 
Sbjct: 1115 PQAKSIF 1121



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 127/508 (25%), Positives = 211/508 (41%), Gaps = 113/508 (22%)

Query: 14   LTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEM----P 69
            + S I  Y K G +D A  LF  +  R+VVS+N+M+SG + NG    A   F +M     
Sbjct: 591  VNSLIATYFKSGEVDSAHKLFDELGDRDVVSWNSMISGCVMNGFSHSALEFFVQMLILRV 650

Query: 70   ERNVVSWTAMICGLADAGRVCEARKLFEEMPE----RNVVSWNSMVVGLIRNGELNEARK 125
              ++ +    +   A+ G +   R L  +  +    R V+  N+++    + G LN+A +
Sbjct: 651  GVDLATLVNSVAACANVGSLSLGRALHGQGVKACFSREVMFNNTLLDMYSKCGNLNDAIQ 710

Query: 126  VFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEER----NVVTWTSMISG------ 175
             F  M  K V+SW ++IA YV   +  +AI LF EME +    +V + TS++        
Sbjct: 711  AFEKMGQKTVVSWTSLIAAYVREGLYDDAIRLFYEMESKGVSPDVYSMTSVLHACACGNS 770

Query: 176  -----------------------------YCRAGEVEEGYCLFRRMPRKNVVSWTAMIGG 206
                                         Y + G +EE Y +F ++P K++VSW  MIGG
Sbjct: 771  LDKGRDVHNYIRKNNMALCLPVSNALMDMYAKCGSMEEAYLVFSQIPVKDIVSWNTMIGG 830

Query: 207  FAWNGFHKESLLLFIEMKG-------------------------------ICDNGNNCNV 235
            ++ N    E+L LF EM+                                I  NG +  +
Sbjct: 831  YSKNSLPNEALKLFAEMQKESRPDGITMACLLPACGSLAALEIGRGIHGCILRNGYSSEL 890

Query: 236  QSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDR 295
               N++I+ Y++ G L  A+ LFD +P +D I+W                          
Sbjct: 891  HVANALIDMYVKCGSLVHARLLFDMIPEKDLITW-------------------------- 924

Query: 296  DAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQ-I 354
                 T MISG   + L  EA   F +MR  G+ P   TF+ +  A   +  ++ G    
Sbjct: 925  -----TVMISGCGMHGLGNEAIATFQKMRIAGIKPDEITFTSILYACSHSGLLNEGWGFF 979

Query: 355  HCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNM-VSRDLVSWNSMVMGFSHHGL 413
            + ++ +   E  L    C++ + A+ G +  AYN+   M +  D   W +++ G   H  
Sbjct: 980  NSMISECNMEPKLEHYACMVDLLARTGNLSKAYNLIETMPIKPDATIWGALLCGCRIHHD 1039

Query: 414  ANETLKVFESMLESGTHPNSVTFLGILS 441
                 KV E + E    P++  +  +L+
Sbjct: 1040 VELAEKVAEHVFE--LEPDNAGYYVLLA 1065



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 103/410 (25%), Positives = 190/410 (46%), Gaps = 25/410 (6%)

Query: 176 YCRAGEVEEGYCLFRRMPRKN-VVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCN 234
           Y   G + EG  +F  +   N V  W  M+  +A  G ++ES+ LF +M+ +   GN+  
Sbjct: 496 YVSCGALREGRRIFDHILSDNKVFLWNLMMSEYAKIGDYRESIYLFKKMQKLGITGNSYT 555

Query: 235 VQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISW----TSMIDGYLSVGQVSNAYYLFH 290
             SC  ++  +   GR+ E + +   V      S+     S+I  Y   G+V +A+ LF 
Sbjct: 556 F-SC--ILKCFATLGRVGECKRIHGCVYKLGFGSYNTVVNSLIATYFKSGEVDSAHKLFD 612

Query: 291 NMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDL 350
            + DRD V+W +MISG V N     A   F++M    V    AT      A     ++ L
Sbjct: 613 ELGDRDVVSWNSMISGCVMNGFSHSALEFFVQMLILRVGVDLATLVNSVAACANVGSLSL 672

Query: 351 GRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSH 410
           GR +H   +K     +++  N L+ MY+KCG +++A   F  M  + +VSW S++  +  
Sbjct: 673 GRALHGQGVKACFSREVMFNNTLLDMYSKCGNLNDAIQAFEKMGQKTVVSWTSLIAAYVR 732

Query: 411 HGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPE 470
            GL ++ +++F  M   G  P+  +   +L AC+    + +G ++ N +         P 
Sbjct: 733 EGLYDDAIRLFYEMESKGVSPDVYSMTSVLHACACGNSLDKGRDVHNYIRKNNMALCLPV 792

Query: 471 HYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLE 530
              +++++  + G ++EA     ++P + D   W  ++G  G+ + +  +   A K   E
Sbjct: 793 SN-ALMDMYAKCGSMEEAYLVFSQIPVK-DIVSWNTMIG--GYSKNS--LPNEALKLFAE 846

Query: 531 LDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNG 580
           +   + P  + +  +  A G         +++G    R + GC  ++RNG
Sbjct: 847 MQKESRPDGITMACLLPACGSLAA-----LEIG----RGIHGC--ILRNG 885



 Score = 49.3 bits (116), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 49/195 (25%), Positives = 85/195 (43%), Gaps = 8/195 (4%)

Query: 320 FMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAK 379
            + M       LNA  S+L   A     +  G+ +H V+       + +L   L+ MY  
Sbjct: 440 LLRMSQKSELDLNAYSSILQLCAEHKC-LQEGKMVHSVISSNGIPIEGVLGAKLVFMYVS 498

Query: 380 CGVIDNAYNIFSNMVSRDLVS-WNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLG 438
           CG +     IF +++S + V  WN M+  ++  G   E++ +F+ M + G   NS TF  
Sbjct: 499 CGALREGRRIFDHILSDNKVFLWNLMMSEYAKIGDYRESIYLFKKMQKLGITGNSYTFSC 558

Query: 439 ILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYV--SMINLLGRAGKIKEAEEFVLRLP 496
           IL   +  G V     +      VYK+  G  + V  S+I    ++G++  A +    L 
Sbjct: 559 ILKCFATLGRVGECKRIHGC---VYKLGFGSYNTVVNSLIATYFKSGEVDSAHKLFDELG 615

Query: 497 FEPDHRIWGALLGAC 511
            + D   W +++  C
Sbjct: 616 -DRDVVSWNSMISGC 629


>gi|125588087|gb|EAZ28751.1| hypothetical protein OsJ_12773 [Oryza sativa Japonica Group]
          Length = 698

 Score =  322 bits (824), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 195/587 (33%), Positives = 294/587 (50%), Gaps = 76/587 (12%)

Query: 83  LADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMP----------I 132
            A +GR+ +AR +F EMPER+ VSW  MVVGL R G   EA K    M           +
Sbjct: 2   FAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMTADGFTPTQFTL 61

Query: 133 KNVIS-----------------------------WNAMIAGYVECCMMGEAIVLFEEMEE 163
            NV+S                              N+++  Y +C     A  +FE M  
Sbjct: 62  TNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDSETATTVFERMPV 121

Query: 164 RNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEM 223
           R+V +W +M+S     G ++    LF  MP +++VSW AMI G+  NG   ++L LF  M
Sbjct: 122 RSVSSWNAMVSLNTHLGRMDLAESLFESMPDRSIVSWNAMIAGYNQNGLDAKALKLFSRM 181

Query: 224 K----------------GICDNGNNC-----------------NVQSCNSMINGYIRFGR 250
                              C N  N                  N Q  N++I+ Y + G 
Sbjct: 182 LHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTEMAYNSQVTNALISTYAKSGS 241

Query: 251 LEEAQNLFDTVPVRD--EISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLV 308
           +E A+ + D     D   IS+T++++GY+ +G + +A  +F  M +RD VAWTAMI G  
Sbjct: 242 VENARRIMDQSMETDLNVISFTALLEGYVKIGDMESAREMFGVMNNRDVVAWTAMIVGYE 301

Query: 309 QNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLI 368
           QN    EA  LF  M   G  P + T + +     + A +D G+QIHC  +++  E    
Sbjct: 302 QNGRNDEAIDLFRSMITCGPEPNSYTLAAVLSVCASLACLDYGKQIHCRAIRSLLEQSSS 361

Query: 369 LENCLISMYAKCGVIDNAYNIFSNMVSR-DLVSWNSMVMGFSHHGLANETLKVFESMLES 427
           + N +I+MYA+ G    A  +F  +  R + ++W SM++  + HG   E + +FE ML +
Sbjct: 362 VSNAIITMYARSGSFPWARRMFDQVCWRKETITWTSMIVALAQHGQGEEAVGLFEEMLRA 421

Query: 428 GTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKE 487
           G  P+ +T++G+LSACSHAG V+ G   ++ + + ++I P   HY  M++LL RAG   E
Sbjct: 422 GVEPDRITYVGVLSACSHAGFVNEGKRYYDQIKNEHQIAPEMSHYACMVDLLARAGLFSE 481

Query: 488 AEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYA 547
           A+EF+ R+P EPD   WG+LL AC     NAE+AE AA++LL +DP N+ A+  + N+Y+
Sbjct: 482 AQEFIRRMPVEPDAIAWGSLLSACRV-HKNAELAELAAEKLLSIDPNNSGAYSAIANVYS 540

Query: 548 ASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQ 594
           A GR  +  ++      K VRK  G SW      I +F + D +  Q
Sbjct: 541 ACGRWSDAARIWKARKEKAVRKETGFSWTHIRSKIHVFGADDVVHPQ 587



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 127/491 (25%), Positives = 208/491 (42%), Gaps = 87/491 (17%)

Query: 16  SSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVS 75
           S +  Y K G  + A  +F+ MP R+V S+NAM+S     GR+  A  LFE MP+R++VS
Sbjct: 98  SVLNMYGKCGDSETATTVFERMPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPDRSIVS 157

Query: 76  WTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVV----------GLIRNGELNEARK 125
           W AMI G    G   +A KLF  M   + ++ +   +          G +R G+   A  
Sbjct: 158 WNAMIAGYNQNGLDAKALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYI 217

Query: 126 VFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEER--NVVTWTSMISGYCRAGEVE 183
           +   M   + ++ NA+I+ Y +   +  A  + ++  E   NV+++T+++ GY + G++E
Sbjct: 218 LRTEMAYNSQVT-NALISTYAKSGSVENARRIMDQSMETDLNVISFTALLEGYVKIGDME 276

Query: 184 EGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEM---------------KGIC- 227
               +F  M  ++VV+WTAMI G+  NG + E++ LF  M                 +C 
Sbjct: 277 SAREMFGVMNNRDVVAWTAMIVGYEQNGRNDEAIDLFRSMITCGPEPNSYTLAAVLSVCA 336

Query: 228 -----DNGNNCNVQS-----------CNSMINGYIRFGRLEEAQNLFDTVPVRDE-ISWT 270
                D G   + ++            N++I  Y R G    A+ +FD V  R E I+WT
Sbjct: 337 SLACLDYGKQIHCRAIRSLLEQSSSVSNAIITMYARSGSFPWARRMFDQVCWRKETITWT 396

Query: 271 SMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPP 330
           SMI      GQ                                 EA  LF EM   GV P
Sbjct: 397 SMIVALAQHGQGE-------------------------------EAVGLFEEMLRAGVEP 425

Query: 331 LNATFSVLFGAAGATANIDLGRQIHCVLMKTESE--SDLILENCLISMYAKCGVIDNAYN 388
              T+  +  A      ++ G++ +  + K E +   ++    C++ + A+ G+   A  
Sbjct: 426 DRITYVGVLSACSHAGFVNEGKRYYDQI-KNEHQIAPEMSHYACMVDLLARAGLFSEAQE 484

Query: 389 IFSNM-VSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNS----VTFLGILSAC 443
               M V  D ++W S++     H  A       E +L     PN+         + SAC
Sbjct: 485 FIRRMPVEPDAIAWGSLLSACRVHKNAELAELAAEKLL--SIDPNNSGAYSAIANVYSAC 542

Query: 444 SHAGLVSRGWE 454
                 +R W+
Sbjct: 543 GRWSDAARIWK 553



 Score = 62.8 bits (151), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 38/123 (30%), Positives = 56/123 (45%), Gaps = 5/123 (4%)

Query: 376 MYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVT 435
           M+AK G + +A  +F+ M  RD VSW  MV+G +  G   E +K    M   G  P   T
Sbjct: 1   MFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMTADGFTPTQFT 60

Query: 436 FLGILSAC--SHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVL 493
              +LS+C  + AG V R    F     +    P      S++N+ G+ G  + A     
Sbjct: 61  LTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVAN---SVLNMYGKCGDSETATTVFE 117

Query: 494 RLP 496
           R+P
Sbjct: 118 RMP 120


>gi|357136755|ref|XP_003569969.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20770-like [Brachypodium distachyon]
          Length = 805

 Score =  321 bits (822), Expect = 9e-85,   Method: Compositional matrix adjust.
 Identities = 192/610 (31%), Positives = 319/610 (52%), Gaps = 46/610 (7%)

Query: 21  YSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNV-VSWTAM 79
           Y+K G +++A  LF  M   N VS+ AM+ G +Q G + +A RLF  M    V V   A+
Sbjct: 185 YTKCGGVEDAVRLFDGMASPNEVSFTAMMGGLVQAGSVDDALRLFARMCRSGVRVDPVAV 244

Query: 80  ICGLADAGRVCEA-------------------RKLFEEMPERNVVSWNSMVVGLIRNGEL 120
              L    + C +                   RK F    +++V   NS++    +  ++
Sbjct: 245 SSVLGSCAQACASEFDVVRAFRLGQCIHALIVRKGFGS--DQHV--GNSLIDMYTKCMQM 300

Query: 121 NEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEER----NVVTWTSMISGY 176
           +EA KVF+S+P  + +SWN +I G+ +     +A+ +   MEE     N VT+++M++  
Sbjct: 301 DEAVKVFDSLPNISTVSWNILITGFGQAGSYAKALEVLNLMEESGSEPNEVTYSNMLASC 360

Query: 177 CRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQ 236
            +A +V     +F ++ R +V +W  ++ G+     H++++ LF  M+       + NVQ
Sbjct: 361 IKARDVLSARAMFDKISRPSVTTWNTLLSGYCQEELHQDTVELFRRMQ-------HQNVQ 413

Query: 237 SCNS----MINGYIRFGRLEEAQNLFDTVPVR-----DEISWTSMIDGYLSVGQVSNAYY 287
              +    +++   R G L+    +  +  VR     D    + ++D Y   GQ+  A  
Sbjct: 414 PDRTTLAVILSSCSRLGILDLGTQVH-SASVRFLLHNDMFVASGLVDMYSKCGQIGIARI 472

Query: 288 LFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATAN 347
           +F+ M +RD V W +MISGL  + L  EA   F +MR +G+ P  ++++ +  +    ++
Sbjct: 473 IFNRMTERDVVCWNSMISGLAIHSLNEEAFDFFKQMRGNGMMPTESSYASMINSCARLSS 532

Query: 348 IDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMG 407
           +  GRQIH  ++K   + ++ + + LI MYAKCG +D+A   F  MV++++V+WN M+ G
Sbjct: 533 VPQGRQIHAQIVKDGYDQNVYVGSALIDMYAKCGNMDDARVFFDCMVTKNIVAWNEMIHG 592

Query: 408 FSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQP 467
           ++ +G   + + +FE ML +   P+ VTF+ +L+ CSH+GLV      FN+M   Y I P
Sbjct: 593 YAQNGFGEKAVDLFEYMLTTEQRPDGVTFIAVLTGCSHSGLVDEAIAFFNSMESTYGITP 652

Query: 468 GPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKR 527
             EHY  +I+ LGRAG++ E E  +  +P + D  +W  LL AC     NAE+ E AAK 
Sbjct: 653 LAEHYTCLIDGLGRAGRLVEVEALIDNMPCKDDPIVWEVLLAACAV-HHNAELGECAAKH 711

Query: 528 LLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLS 587
           L  LDP N   +V+L NIYA+ GRH +   +R  M  +GV K  G SW+    G+  F+ 
Sbjct: 712 LFRLDPKNPSPYVLLSNIYASLGRHGDASGVRALMSSRGVVKGRGYSWIDHKDGVHAFMV 771

Query: 588 GDKIPAQVAE 597
            D +     E
Sbjct: 772 ADDLQTDGGE 781



 Score =  201 bits (512), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 140/528 (26%), Positives = 249/528 (47%), Gaps = 63/528 (11%)

Query: 21  YSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMI 80
           YS  G   +A   F+ +P+ N  SYNA LS   + G L  AR L +EMP+RNVVSW  +I
Sbjct: 53  YSVSGLPCDALRAFRSLPRPNAYSYNAALSAARRAGDLDAARALLDEMPDRNVVSWNTVI 112

Query: 81  CGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRN----GELNEARKVFNSMPIK--- 133
             LA + R  EA +L+E M    +V  +  +  ++        L++ R+  + + +K   
Sbjct: 113 AALARSERAGEALELYEGMLREGLVPTHFTLASVLSACGAVAALDDGRRC-HGLAVKVGL 171

Query: 134 --NVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRR 191
             N+   NA++  Y +C  + +A+ LF+ M   N V++T+M+ G  +AG V++   LF R
Sbjct: 172 DENLFVENALLGMYTKCGGVEDAVRLFDGMASPNEVSFTAMMGGLVQAGSVDDALRLFAR 231

Query: 192 MPRKNV----VSWTAMIGGFAWNGFHKESLLLFIEMKG-----ICDNGNNCNVQSCNSMI 242
           M R  V    V+ ++++G  A     +  ++    +       I   G   +    NS+I
Sbjct: 232 MCRSGVRVDPVAVSSVLGSCAQACASEFDVVRAFRLGQCIHALIVRKGFGSDQHVGNSLI 291

Query: 243 NGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPD-------- 294
           + Y +  +++EA  +FD++P    +SW  +I G+   G  + A  + + M +        
Sbjct: 292 DMYTKCMQMDEAVKVFDSLPNISTVSWNILITGFGQAGSYAKALEVLNLMEESGSEPNEV 351

Query: 295 ------------RDAVA---------------WTAMISGLVQNELFVEATYLFMEMRAHG 327
                       RD ++               W  ++SG  Q EL  +   LF  M+   
Sbjct: 352 TYSNMLASCIKARDVLSARAMFDKISRPSVTTWNTLLSGYCQEELHQDTVELFRRMQHQN 411

Query: 328 VPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAY 387
           V P   T +V+  +      +DLG Q+H   ++    +D+ + + L+ MY+KCG I  A 
Sbjct: 412 VQPDRTTLAVILSSCSRLGILDLGTQVHSASVRFLLHNDMFVASGLVDMYSKCGQIGIAR 471

Query: 388 NIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAG 447
            IF+ M  RD+V WNSM+ G + H L  E    F+ M  +G  P   ++  ++++C+   
Sbjct: 472 IIFNRMTERDVVCWNSMISGLAIHSLNEEAFDFFKQMRGNGMMPTESSYASMINSCARLS 531

Query: 448 LVSRGWELFNAMFDVYKIQPGPEHYV----SMINLLGRAGKIKEAEEF 491
            V +G ++   +     ++ G +  V    ++I++  + G + +A  F
Sbjct: 532 SVPQGRQIHAQI-----VKDGYDQNVYVGSALIDMYAKCGNMDDARVF 574



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 121/445 (27%), Positives = 198/445 (44%), Gaps = 54/445 (12%)

Query: 122 EARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGE 181
           +A + F S+P  N  S+NA ++       +  A  L +EM +RNVV+W ++I+   R+  
Sbjct: 61  DALRAFRSLPRPNAYSYNAALSAARRAGDLDAARALLDEMPDRNVVSWNTVIAALARSER 120

Query: 182 VEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSM 241
             E   L+  M R+ +V             F   S+L         D+G  C+  +    
Sbjct: 121 AGEALELYEGMLREGLVP----------THFTLASVLSACGAVAALDDGRRCHGLA---- 166

Query: 242 INGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWT 301
               ++ G L+E  NLF            +++  Y   G V +A  LF  M   + V++T
Sbjct: 167 ----VKVG-LDE--NLF---------VENALLGMYTKCGGVEDAVRLFDGMASPNEVSFT 210

Query: 302 AMISGLVQNELFVEATYLFMEMRAHGV--PPLNATFSVLFGAAGATAN-------IDLGR 352
           AM+ GLVQ     +A  LF  M   GV   P+ A  SVL   A A A+         LG+
Sbjct: 211 AMMGGLVQAGSVDDALRLFARMCRSGVRVDPV-AVSSVLGSCAQACASEFDVVRAFRLGQ 269

Query: 353 QIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHG 412
            IH ++++    SD  + N LI MY KC  +D A  +F ++ +   VSWN ++ GF   G
Sbjct: 270 CIHALIVRKGFGSDQHVGNSLIDMYTKCMQMDEAVKVFDSLPNISTVSWNILITGFGQAG 329

Query: 413 LANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHY 472
              + L+V   M ESG+ PN VT+  +L++C  A    R      AMFD    +P    +
Sbjct: 330 SYAKALEVLNLMEESGSEPNEVTYSNMLASCIKA----RDVLSARAMFDKIS-RPSVTTW 384

Query: 473 VSMINLLGRAGKIKEAEEFVLRLP---FEPDHRIWGALLGAC---GFCEGNAEIAEHAAK 526
            ++++   +    ++  E   R+     +PD      +L +C   G  +   ++   + +
Sbjct: 385 NTLLSGYCQEELHQDTVELFRRMQHQNVQPDRTTLAVILSSCSRLGILDLGTQVHSASVR 444

Query: 527 RLLELDPLNAPAHVVLCNIYAASGR 551
            LL  D   A     L ++Y+  G+
Sbjct: 445 FLLHNDMFVASG---LVDMYSKCGQ 466



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 73/265 (27%), Positives = 131/265 (49%), Gaps = 7/265 (2%)

Query: 239 NSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAV 298
           N ++  Y   G   +A   F ++P  +  S+ + +      G +  A  L   MPDR+ V
Sbjct: 47  NRLVELYSVSGLPCDALRAFRSLPRPNAYSYNAALSAARRAGDLDAARALLDEMPDRNVV 106

Query: 299 AWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVL 358
           +W  +I+ L ++E   EA  L+  M   G+ P + T + +  A GA A +D GR+ H + 
Sbjct: 107 SWNTVIAALARSERAGEALELYEGMLREGLVPTHFTLASVLSACGAVAALDDGRRCHGLA 166

Query: 359 MKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETL 418
           +K   + +L +EN L+ MY KCG +++A  +F  M S + VS+ +M+ G    G  ++ L
Sbjct: 167 VKVGLDENLFVENALLGMYTKCGGVEDAVRLFDGMASPNEVSFTAMMGGLVQAGSVDDAL 226

Query: 419 KVFESMLESGTHPNSVTFLGILSACSHAGL----VSRGWELFNAMFD-VYKIQPGPEHYV 473
           ++F  M  SG   + V    +L +C+ A      V R + L   +   + +   G + +V
Sbjct: 227 RLFARMCRSGVRVDPVAVSSVLGSCAQACASEFDVVRAFRLGQCIHALIVRKGFGSDQHV 286

Query: 474 --SMINLLGRAGKIKEAEEFVLRLP 496
             S+I++  +  ++ EA +    LP
Sbjct: 287 GNSLIDMYTKCMQMDEAVKVFDSLP 311



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 69/269 (25%), Positives = 126/269 (46%), Gaps = 46/269 (17%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVV--- 74
           +  YSK G I  A+ +F  M +R+VV +N+M+SG   +    EA   F++M    ++   
Sbjct: 458 VDMYSKCGQIGIARIIFNRMTERDVVCWNSMISGLAIHSLNEEAFDFFKQMRGNGMMPTE 517

Query: 75  -SWTAMICGLADAGRVCEARKLFEEMP----ERNVVSWNSMVVGLIRNGELNEARKVFNS 129
            S+ +MI   A    V + R++  ++     ++NV   ++++    + G +++AR  F+ 
Sbjct: 518 SSYASMINSCARLSSVPQGRQIHAQIVKDGYDQNVYVGSALIDMYAKCGNMDDARVFFDC 577

Query: 130 MPIKNVISWNAMIAGYVECCMMGEAIVLFEEM---EER-NVVTWTSMISGYCRAGEVEEG 185
           M  KN+++WN MI GY +     +A+ LFE M   E+R + VT+ ++++G   +G V+E 
Sbjct: 578 MVTKNIVAWNEMIHGYAQNGFGEKAVDLFEYMLTTEQRPDGVTFIAVLTGCSHSGLVDEA 637

Query: 186 YCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGY 245
              F  M     ++  A                                 +    +I+G 
Sbjct: 638 IAFFNSMESTYGITPLA---------------------------------EHYTCLIDGL 664

Query: 246 IRFGRLEEAQNLFDTVPVRDE-ISWTSMI 273
            R GRL E + L D +P +D+ I W  ++
Sbjct: 665 GRAGRLVEVEALIDNMPCKDDPIVWEVLL 693



 Score = 65.5 bits (158), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 42/137 (30%), Positives = 71/137 (51%), Gaps = 10/137 (7%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEM----PERNV 73
           I  Y+K G +D+A+  F  M  +N+V++N M+ G+ QNG   +A  LFE M       + 
Sbjct: 559 IDMYAKCGNMDDARVFFDCMVTKNIVAWNEMIHGYAQNGFGEKAVDLFEYMLTTEQRPDG 618

Query: 74  VSWTAMICGLADAGRVCEARKLFEEMPERNVVS-----WNSMVVGLIRNGELNEARKVFN 128
           V++ A++ G + +G V EA   F  M     ++     +  ++ GL R G L E   + +
Sbjct: 619 VTFIAVLTGCSHSGLVDEAIAFFNSMESTYGITPLAEHYTCLIDGLGRAGRLVEVEALID 678

Query: 129 SMPIK-NVISWNAMIAG 144
           +MP K + I W  ++A 
Sbjct: 679 NMPCKDDPIVWEVLLAA 695


>gi|449517557|ref|XP_004165812.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like [Cucumis sativus]
          Length = 667

 Score =  320 bits (821), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 175/498 (35%), Positives = 278/498 (55%), Gaps = 11/498 (2%)

Query: 103 NVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECC-MMGEAIVLFEEM 161
           +VVS N  +   +R  +L  AR VF  M ++  ++WN M++GY +    + EA  LF+++
Sbjct: 72  DVVSLNKTIASFVRACDLESARNVFEKMSVRTTVTWNTMLSGYTKVAGKVKEAHELFDKI 131

Query: 162 EERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFI 221
            E + V++  M+  Y R+  VE     F +MP K++ SW  +I GFA NG  +++  LF 
Sbjct: 132 PEPDSVSYNIMLVCYLRSYGVEAALAFFNKMPVKDIASWNTLISGFAQNGQMQKAFDLFS 191

Query: 222 EMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQ 281
            M          N  S ++MI+GY+  G LE A+ L+  V ++  +  T+M+ GY+  G+
Sbjct: 192 VMP-------EKNGVSWSAMISGYVEHGDLEAAEELYKNVGMKSVVVETAMLTGYMKFGK 244

Query: 282 VSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFS-VLFG 340
           V  A  +F  M  ++ V W +MI+G V+N    +   +F  M    V P   + S VL G
Sbjct: 245 VELAERIFQRMAVKNLVTWNSMIAGYVENCRAEDGLKVFKTMIESRVRPNPLSLSSVLLG 304

Query: 341 AAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVS 400
            +  +A + LGRQ+H ++ K+    D      LISMY KCG +D+A+ +F  M  +D++S
Sbjct: 305 CSNLSA-LPLGRQMHQLVSKSPLSKDTTACTSLISMYCKCGDLDSAWKLFLEMPRKDVIS 363

Query: 401 WNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMF 460
           WN+M+ G++ HG   + L +F+ M      P+ +TF+ ++ AC+HAG V  G + F +M 
Sbjct: 364 WNAMISGYAQHGAGRKALHLFDKMRNGTMKPDWITFVAVILACNHAGFVDLGVQYFKSMK 423

Query: 461 DVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEI 520
             + I+  P HY  +I+LLGRAG++ EA   +  +PF+P   I+G LLGAC     N ++
Sbjct: 424 KEFGIEAKPVHYTCVIDLLGRAGRLDEAVSLIKEMPFKPHAAIYGTLLGACRI-HKNLDL 482

Query: 521 AEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNG 580
           AE AA+ LL LDP +A  +V L NIYAA+ +  +  K+R  M    V K+PG SW+    
Sbjct: 483 AEFAARNLLNLDPTSATGYVQLANIYAATNKWDQVAKVRKMMKEHNVVKIPGYSWIEIKS 542

Query: 581 GIQMFLSGDKIPAQVAEI 598
               F S D++  ++  I
Sbjct: 543 VTHEFRSSDRLHPELTSI 560



 Score =  201 bits (511), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 128/393 (32%), Positives = 217/393 (55%), Gaps = 13/393 (3%)

Query: 9   SLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQ-NGRLSEARRLFEE 67
           S VV L  +I  + +   ++ A+ +F+ M  R  V++N MLSG+ +  G++ EA  LF++
Sbjct: 71  SDVVSLNKTIASFVRACDLESARNVFEKMSVRTTVTWNTMLSGYTKVAGKVKEAHELFDK 130

Query: 68  MPERNVVSWTAM-ICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKV 126
           +PE + VS+  M +C L   G V  A   F +MP +++ SWN+++ G  +NG++ +A  +
Sbjct: 131 IPEPDSVSYNIMLVCYLRSYG-VEAALAFFNKMPVKDIASWNTLISGFAQNGQMQKAFDL 189

Query: 127 FNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGY 186
           F+ MP KN +SW+AMI+GYVE   +  A  L++ +  ++VV  T+M++GY + G+VE   
Sbjct: 190 FSVMPEKNGVSWSAMISGYVEHGDLEAAEELYKNVGMKSVVVETAMLTGYMKFGKVELAE 249

Query: 187 CLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYI 246
            +F+RM  KN+V+W +MI G+  N   ++ L +F   K + ++    N  S +S++ G  
Sbjct: 250 RIFQRMAVKNLVTWNSMIAGYVENCRAEDGLKVF---KTMIESRVRPNPLSLSSVLLGCS 306

Query: 247 RFGRL---EEAQNLFDTVPV-RDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTA 302
               L    +   L    P+ +D  + TS+I  Y   G + +A+ LF  MP +D ++W A
Sbjct: 307 NLSALPLGRQMHQLVSKSPLSKDTTACTSLISMYCKCGDLDSAWKLFLEMPRKDVISWNA 366

Query: 303 MISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTE 362
           MISG  Q+    +A +LF +MR   + P   TF  +  A      +DLG Q +   MK E
Sbjct: 367 MISGYAQHGAGRKALHLFDKMRNGTMKPDWITFVAVILACNHAGFVDLGVQ-YFKSMKKE 425

Query: 363 --SESDLILENCLISMYAKCGVIDNAYNIFSNM 393
              E+  +   C+I +  + G +D A ++   M
Sbjct: 426 FGIEAKPVHYTCVIDLLGRAGRLDEAVSLIKEM 458



 Score = 48.1 bits (113), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 47/186 (25%), Positives = 93/186 (50%), Gaps = 21/186 (11%)

Query: 352 RQIHCVL-------MKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSM 404
           R+IH V        +  ++ SD++  N  I+ + +   +++A N+F  M  R  V+WN+M
Sbjct: 51  RRIHLVSPNNVTPNLHVDTASDVVSLNKTIASFVRACDLESARNVFEKMSVRTTVTWNTM 110

Query: 405 VMGFSH-HGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVY 463
           + G++   G   E  ++F+ + E    P+SV++  I+  C    L S G E   A F+  
Sbjct: 111 LSGYTKVAGKVKEAHELFDKIPE----PDSVSY-NIMLVCY---LRSYGVEAALAFFNKM 162

Query: 464 KIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCE-GNAEIAE 522
            ++     + ++I+   + G++++A +    +P E +   W A++   G+ E G+ E AE
Sbjct: 163 PVK-DIASWNTLISGFAQNGQMQKAFDLFSVMP-EKNGVSWSAMIS--GYVEHGDLEAAE 218

Query: 523 HAAKRL 528
              K +
Sbjct: 219 ELYKNV 224


>gi|242064134|ref|XP_002453356.1| hypothetical protein SORBIDRAFT_04g004500 [Sorghum bicolor]
 gi|241933187|gb|EES06332.1| hypothetical protein SORBIDRAFT_04g004500 [Sorghum bicolor]
          Length = 807

 Score =  320 bits (821), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 193/606 (31%), Positives = 321/606 (52%), Gaps = 38/606 (6%)

Query: 21  YSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNV------V 74
           Y+K G + +A  LF  M   N VS+ AM+ G  Q+G + +A RLF  M    +      V
Sbjct: 187 YTKCGSVADAVRLFDWMSSPNEVSFTAMMGGLAQSGAVDDALRLFARMSRSAIRVDPVAV 246

Query: 75  SWTAMICGLADAG--RVCEARKLFEEMP--------ERNVVSWNSMVVGLIRNGELNEAR 124
           S     C  A AG   V  A +L + +         + +    NS++    +  +++EA 
Sbjct: 247 SSVLGACAQACAGDYNVARAIRLAQSIHALVVRKGFDSDQHVGNSLIDMYAKGMKMDEAM 306

Query: 125 KVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEER----NVVTWTSMISGYCRAG 180
           KVF SM   +++SWN ++ GY +      A+ + + M+E     N VT+++M++   +A 
Sbjct: 307 KVFESMSSVSIVSWNILVTGYGQLGCYERALEVLDLMQESGFEPNEVTYSNMLASCIKAR 366

Query: 181 EVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNS 240
           +V     +F ++ + +V +W  ++ G+     H++++ LF  M+       + NVQ   +
Sbjct: 367 DVPSARAMFDKISKPSVTTWNTLLSGYGQEELHQDTIELFRRMQ-------HQNVQPDRT 419

Query: 241 ----MINGYIRFGRLEEAQNLFDTVPVR-----DEISWTSMIDGYLSVGQVSNAYYLFHN 291
               +++   R G LE  + +  +  V+     D    + +ID Y   GQV  A  +F+ 
Sbjct: 420 TLAVILSTCSRLGILELGKQVH-SASVKLLLHNDMFVASGLIDMYSKCGQVGIAQIIFNM 478

Query: 292 MPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLG 351
           M +RD V W +MISGL  + L  EA   F +MR +G+ P  ++++ +  +    ++I  G
Sbjct: 479 MTERDVVCWNSMISGLAIHSLNEEAFDFFKQMRENGMFPTESSYASMINSCARLSSIPQG 538

Query: 352 RQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHH 411
           RQIH  ++K   + ++ + + LI MYAKCG +D+A   F+ M+ +++V+WN M+ G++ +
Sbjct: 539 RQIHAQVLKDGYDQNVYVGSSLIDMYAKCGNMDDARLFFNCMIVKNIVAWNEMIHGYAQN 598

Query: 412 GLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEH 471
           G   + +++FE ML +   P+SVTF+ +L+ CSH+GLV      FN+M   Y I+P  EH
Sbjct: 599 GFGEKAVELFEYMLTTKQKPDSVTFIAVLTGCSHSGLVDEAIAYFNSMESNYGIRPLVEH 658

Query: 472 YVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLEL 531
           Y  +I+ LGRAG+  E    + ++P++ D  +W  LL AC     NAE+ E AAK L  L
Sbjct: 659 YTCLIDALGRAGRFAEVVAVIDKMPYKDDAILWEVLLAAC-VVHHNAELGEFAAKHLFRL 717

Query: 532 DPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKI 591
           DP N   +V+L NIYA  GRH +   +R  M  +GV K  G SW+    G + F+  D +
Sbjct: 718 DPKNPSPYVLLSNIYATLGRHGDASAVRALMSSRGVVKGRGYSWVNHKDGARAFMVADDL 777

Query: 592 PAQVAE 597
              V E
Sbjct: 778 GMNVGE 783



 Score =  188 bits (478), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 131/526 (24%), Positives = 239/526 (45%), Gaps = 59/526 (11%)

Query: 21  YSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMI 80
           YS  G    A   F+ +P+ NV SYNA +S   + G L+ AR L   MP+RN VSW  +I
Sbjct: 55  YSLSGLPCHALRAFRALPRPNVYSYNAAISAACRAGDLAAARDLLGRMPDRNAVSWNTVI 114

Query: 81  CGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRN----GELNEARKVFNSMPIK--- 133
             +A +    EA +++  M +  +   N  +  ++        L++ R+  + + +K   
Sbjct: 115 AAVARSDSPGEALEMYRGMLQEGLAPTNFTLASVLSACGAVAALDDGRRC-HGLAVKVGL 173

Query: 134 --NVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRR 191
             N    N ++  Y +C  + +A+ LF+ M   N V++T+M+ G  ++G V++   LF R
Sbjct: 174 DGNQFVENGLLGMYTKCGSVADAVRLFDWMSSPNEVSFTAMMGGLAQSGAVDDALRLFAR 233

Query: 192 MPRKNV----VSWTAMIGGFAWNGFHKESLLLFIEMKG-----ICDNGNNCNVQSCNSMI 242
           M R  +    V+ ++++G  A       ++   I +       +   G + +    NS+I
Sbjct: 234 MSRSAIRVDPVAVSSVLGACAQACAGDYNVARAIRLAQSIHALVVRKGFDSDQHVGNSLI 293

Query: 243 NGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVG---------------------- 280
           + Y +  +++EA  +F+++     +SW  ++ GY  +G                      
Sbjct: 294 DMYAKGMKMDEAMKVFESMSSVSIVSWNILVTGYGQLGCYERALEVLDLMQESGFEPNEV 353

Query: 281 -------------QVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHG 327
                         V +A  +F  +       W  ++SG  Q EL  +   LF  M+   
Sbjct: 354 TYSNMLASCIKARDVPSARAMFDKISKPSVTTWNTLLSGYGQEELHQDTIELFRRMQHQN 413

Query: 328 VPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAY 387
           V P   T +V+         ++LG+Q+H   +K    +D+ + + LI MY+KCG +  A 
Sbjct: 414 VQPDRTTLAVILSTCSRLGILELGKQVHSASVKLLLHNDMFVASGLIDMYSKCGQVGIAQ 473

Query: 388 NIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAG 447
            IF+ M  RD+V WNSM+ G + H L  E    F+ M E+G  P   ++  ++++C+   
Sbjct: 474 IIFNMMTERDVVCWNSMISGLAIHSLNEEAFDFFKQMRENGMFPTESSYASMINSCARLS 533

Query: 448 LVSRGWELFNAMFDVYKIQPGPEHYV--SMINLLGRAGKIKEAEEF 491
            + +G ++      V K       YV  S+I++  + G + +A  F
Sbjct: 534 SIPQGRQIHA---QVLKDGYDQNVYVGSSLIDMYAKCGNMDDARLF 576



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 61/208 (29%), Positives = 105/208 (50%)

Query: 239 NSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAV 298
           N ++  Y   G    A   F  +P  +  S+ + I      G ++ A  L   MPDR+AV
Sbjct: 49  NRLVELYSLSGLPCHALRAFRALPRPNVYSYNAAISAACRAGDLAAARDLLGRMPDRNAV 108

Query: 299 AWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVL 358
           +W  +I+ + +++   EA  ++  M   G+ P N T + +  A GA A +D GR+ H + 
Sbjct: 109 SWNTVIAAVARSDSPGEALEMYRGMLQEGLAPTNFTLASVLSACGAVAALDDGRRCHGLA 168

Query: 359 MKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETL 418
           +K   + +  +EN L+ MY KCG + +A  +F  M S + VS+ +M+ G +  G  ++ L
Sbjct: 169 VKVGLDGNQFVENGLLGMYTKCGSVADAVRLFDWMSSPNEVSFTAMMGGLAQSGAVDDAL 228

Query: 419 KVFESMLESGTHPNSVTFLGILSACSHA 446
           ++F  M  S    + V    +L AC+ A
Sbjct: 229 RLFARMSRSAIRVDPVAVSSVLGACAQA 256



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 46/143 (32%), Positives = 73/143 (51%), Gaps = 12/143 (8%)

Query: 15  TSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEM----PE 70
           +S I  Y+K G +D+A+  F  M  +N+V++N M+ G+ QNG   +A  LFE M     +
Sbjct: 558 SSLIDMYAKCGNMDDARLFFNCMIVKNIVAWNEMIHGYAQNGFGEKAVELFEYMLTTKQK 617

Query: 71  RNVVSWTAMICGLADAGRVCEARKLFEEMPERN------VVSWNSMVVGLIRNGELNEAR 124
            + V++ A++ G + +G V EA   F  M E N      V  +  ++  L R G   E  
Sbjct: 618 PDSVTFIAVLTGCSHSGLVDEAIAYFNSM-ESNYGIRPLVEHYTCLIDALGRAGRFAEVV 676

Query: 125 KVFNSMPIK-NVISWNAMIAGYV 146
            V + MP K + I W  ++A  V
Sbjct: 677 AVIDKMPYKDDAILWEVLLAACV 699


>gi|225442904|ref|XP_002264123.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930 [Vitis vinifera]
          Length = 724

 Score =  320 bits (821), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 191/569 (33%), Positives = 298/569 (52%), Gaps = 44/569 (7%)

Query: 56  GRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVV----SWNSMV 111
           G +  AR +F+ MP  N   W  MI G +  G    A  ++ EM ER V+    ++  ++
Sbjct: 67  GDMEYARMVFDTMPGPNHFVWNNMIKGYSRVGCPNSAVSMYCEMLERGVMPDEYTYPFLL 126

Query: 112 VGLIRNGELNEARKVFNSMPIK-----NVISWNAMIAGYVECCMMGEAIVLFEEMEERNV 166
               R+  +   R++ + + +K     NV   NA+I  Y     +  A  +F+   + +V
Sbjct: 127 KRFTRDTAVKCGRELHDHI-VKLGFSSNVFVQNALIHLYSLSGEVSVARGVFDRSSKGDV 185

Query: 167 VTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGI 226
           VTW  MISGY R+ + +E   LF  M R  V+                 S +  + +   
Sbjct: 186 VTWNVMISGYNRSKQFDESMKLFDEMERMRVLP----------------SSITLVSVLSA 229

Query: 227 CDNGNNCNVQSC-----------------NSMINGYIRFGRLEEAQNLFDTVPVRDEISW 269
           C    + NV                    N++I+ Y   G ++ A  +FD +  RD ISW
Sbjct: 230 CSKLKDLNVGKRVHRYVKDLKIEPVRVLENALIDMYAACGDMDTALGIFDNMKSRDVISW 289

Query: 270 TSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVP 329
           T+++ G+ ++GQV  A   F  MP+RD V+WTAMI G +Q   F E   LF EM+A  + 
Sbjct: 290 TAIVTGFTNLGQVGLARNYFDKMPERDFVSWTAMIDGYLQVNRFKEVLSLFREMQAANIK 349

Query: 330 PLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNI 389
           P   T   +  A      ++LG  I   + K E + D  + N LI MY  CG ++ A  I
Sbjct: 350 PDEFTMVSILTACAHLGALELGEWIKAYIDKNEIKIDSFVGNALIDMYFNCGNVEKAIRI 409

Query: 390 FSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLV 449
           F+ M  RD +SW +++ G + +G   E L +F  ML++   P+ VT +G+L AC+H+G+V
Sbjct: 410 FNAMPHRDKISWTAVIFGLAINGYGEEALDMFSQMLKASITPDEVTCIGVLCACTHSGMV 469

Query: 450 SRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLG 509
            +G + F  M   + I+P   HY  M++LLGRAG +KEA E +  +P +P+  +WG+LLG
Sbjct: 470 DKGKKFFARMTTQHGIEPNVAHYGCMVDLLGRAGHLKEAHEVIKNMPVKPNSIVWGSLLG 529

Query: 510 ACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRK 569
           AC     + E+AE AA+++LEL+P N   +V+LCNIYAA  R  + H++R  M  +G++K
Sbjct: 530 ACRV-HRDEEMAEMAAQQILELEPENGAVYVLLCNIYAACNRWEKLHEVRKLMMDRGIKK 588

Query: 570 VPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
            PGCS +  NG +  F++GD++  Q  EI
Sbjct: 589 TPGCSLIEMNGSVHEFVAGDQVHPQSKEI 617



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 96/381 (25%), Positives = 166/381 (43%), Gaps = 42/381 (11%)

Query: 165 NVVTWTSMISGYCR--AGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIE 222
           N +    +I+  C+   G++E    +F  MP  N   W  MI G++  G    ++ ++ E
Sbjct: 50  NPIVPAQIIAFCCKHELGDMEYARMVFDTMPGPNHFVWNNMIKGYSRVGCPNSAVSMYCE 109

Query: 223 MKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVP----VRDEISWTSMIDGYLS 278
           M    + G   +  +   ++  + R   ++  + L D +       +     ++I  Y  
Sbjct: 110 M---LERGVMPDEYTYPFLLKRFTRDTAVKCGRELHDHIVKLGFSSNVFVQNALIHLYSL 166

Query: 279 VGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVL 338
            G+VS A  +F      D V W  MISG  +++ F E+  LF EM    V P + T   +
Sbjct: 167 SGEVSVARGVFDRSSKGDVVTWNVMISGYNRSKQFDESMKLFDEMERMRVLPSSITLVSV 226

Query: 339 FGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDL 398
             A     ++++G+++H  +   + E   +LEN LI MYA CG +D A  IF NM SRD+
Sbjct: 227 LSACSKLKDLNVGKRVHRYVKDLKIEPVRVLENALIDMYAACGDMDTALGIFDNMKSRDV 286

Query: 399 VSWNSMVMGFSHHGLA-------------------------------NETLKVFESMLES 427
           +SW ++V GF++ G                                  E L +F  M  +
Sbjct: 287 ISWTAIVTGFTNLGQVGLARNYFDKMPERDFVSWTAMIDGYLQVNRFKEVLSLFREMQAA 346

Query: 428 GTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKE 487
              P+  T + IL+AC+H G +  G E   A  D  +I+       ++I++    G +++
Sbjct: 347 NIKPDEFTMVSILTACAHLGALELG-EWIKAYIDKNEIKIDSFVGNALIDMYFNCGNVEK 405

Query: 488 AEEFVLRLPFEPDHRIWGALL 508
           A      +P   D   W A++
Sbjct: 406 AIRIFNAMPHR-DKISWTAVI 425



 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 69/273 (25%), Positives = 133/273 (48%), Gaps = 17/273 (6%)

Query: 46  NAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVV 105
           NA++  +   G +  A  +F+ M  R+V+SWTA++ G  + G+V  AR  F++MPER+ V
Sbjct: 259 NALIDMYAACGDMDTALGIFDNMKSRDVISWTAIVTGFTNLGQVGLARNYFDKMPERDFV 318

Query: 106 SWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCM------MGEAIVLFE 159
           SW +M+ G ++     E   +F  M   N+      +   +  C       +GE I  + 
Sbjct: 319 SWTAMIDGYLQVNRFKEVLSLFREMQAANIKPDEFTMVSILTACAHLGALELGEWIKAYI 378

Query: 160 EMEERNVVTWT--SMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESL 217
           +  E  + ++   ++I  Y   G VE+   +F  MP ++ +SWTA+I G A NG+ +E+L
Sbjct: 379 DKNEIKIDSFVGNALIDMYFNCGNVEKAIRIFNAMPHRDKISWTAVIFGLAINGYGEEAL 438

Query: 218 LLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEIS-----WTSM 272
            +F +M       +     +C  ++      G +++ +  F  +  +  I      +  M
Sbjct: 439 DMFSQMLKASITPDEV---TCIGVLCACTHSGMVDKGKKFFARMTTQHGIEPNVAHYGCM 495

Query: 273 IDGYLSVGQVSNAYYLFHNMPDR-DAVAWTAMI 304
           +D     G +  A+ +  NMP + +++ W +++
Sbjct: 496 VDLLGRAGHLKEAHEVIKNMPVKPNSIVWGSLL 528



 Score =  108 bits (270), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 80/270 (29%), Positives = 130/270 (48%), Gaps = 17/270 (6%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWT 77
           I  Y+  G +D A  +F  M  R+V+S+ A+++GF   G++  AR  F++MPER+ VSWT
Sbjct: 262 IDMYAACGDMDTALGIFDNMKSRDVISWTAIVTGFTNLGQVGLARNYFDKMPERDFVSWT 321

Query: 78  AMICGLADAGRVCEARKLFEEMPERNVVSWNSMVV---------GLIRNGELNEARKVFN 128
           AMI G     R  E   LF EM   N+      +V         G +  GE  +A    N
Sbjct: 322 AMIDGYLQVNRFKEVLSLFREMQAANIKPDEFTMVSILTACAHLGALELGEWIKAYIDKN 381

Query: 129 SMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCL 188
            + I + +  NA+I  Y  C  + +AI +F  M  R+ ++WT++I G    G  EE   +
Sbjct: 382 EIKIDSFVG-NALIDMYFNCGNVEKAIRIFNAMPHRDKISWTAVIFGLAINGYGEEALDM 440

Query: 189 FRRMPRKNV----VSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMING 244
           F +M + ++    V+   ++     +G   +    F  M     +G   NV     M++ 
Sbjct: 441 FSQMLKASITPDEVTCIGVLCACTHSGMVDKGKKFFARM--TTQHGIEPNVAHYGCMVDL 498

Query: 245 YIRFGRLEEAQNLFDTVPVR-DEISWTSMI 273
             R G L+EA  +   +PV+ + I W S++
Sbjct: 499 LGRAGHLKEAHEVIKNMPVKPNSIVWGSLL 528



 Score = 79.0 bits (193), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 62/245 (25%), Positives = 103/245 (42%), Gaps = 49/245 (20%)

Query: 11  VVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPE 70
           V+  T+ +T ++  G +  A+  F  MP+R+ VS+ AM+ G+LQ  R  E   LF EM  
Sbjct: 286 VISWTAIVTGFTNLGQVGLARNYFDKMPERDFVSWTAMIDGYLQVNRFKEVLSLFREMQA 345

Query: 71  RNVV----------------------SW-----------------TAMICGLADAGRVCE 91
            N+                        W                  A+I    + G V +
Sbjct: 346 ANIKPDEFTMVSILTACAHLGALELGEWIKAYIDKNEIKIDSFVGNALIDMYFNCGNVEK 405

Query: 92  ARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECC-- 149
           A ++F  MP R+ +SW +++ GL  NG   EA  +F+ M   ++        G +  C  
Sbjct: 406 AIRIFNAMPHRDKISWTAVIFGLAINGYGEEALDMFSQMLKASITPDEVTCIGVLCACTH 465

Query: 150 --MMGEAIVLFEEME-----ERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRK-NVVSWT 201
             M+ +    F  M      E NV  +  M+    RAG ++E + + + MP K N + W 
Sbjct: 466 SGMVDKGKKFFARMTTQHGIEPNVAHYGCMVDLLGRAGHLKEAHEVIKNMPVKPNSIVWG 525

Query: 202 AMIGG 206
           +++G 
Sbjct: 526 SLLGA 530


>gi|108710611|gb|ABF98406.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 787

 Score =  320 bits (820), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 190/621 (30%), Positives = 321/621 (51%), Gaps = 63/621 (10%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWT 77
           + ++ K G I  A+ LF  MP+R+VVSY  M+   ++ G + +A  L+ + P  +V  +T
Sbjct: 155 VREHVKAGDIVSARRLFDGMPERSVVSYTTMVDALMKRGSVRDAVELYRQCPLCSVPFFT 214

Query: 78  AMICGLADAGRVCEARKLFEEM------P------------------------------- 100
           AMI G        +A  +F EM      P                               
Sbjct: 215 AMIAGFVLNELPKDALGVFHEMLSCGVSPNEITLVSVIKACIGAGEFDLAMSIVGLAMKS 274

Query: 101 ---ERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVL 157
              ++N+   NS++   +R G+ + AR++F+ M +++V+SW A++  Y E   +  A  +
Sbjct: 275 NLLDKNLGVRNSLITLYLRKGDADAARRMFDEMEVRDVVSWTALLDVYAELGDLEGARRV 334

Query: 158 FEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRM----PRKNVVSWTAMIGGFA----- 208
            +EM ERN V+W ++++ + + G  +E   L+ +M     R N+  +++++G  A     
Sbjct: 335 LDEMPERNEVSWGTLVARHEQKGNAKEAVSLYSQMLADGCRPNISCFSSVLGACASLQDL 394

Query: 209 --WNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDE 266
                 H ++L      K  C N    NV   +++I+ Y +  +L +AQ +F ++P ++ 
Sbjct: 395 RSGRKIHNQTL------KMACSN----NVFVSSALIDMYCKCKQLPDAQMIFYSLPQKNI 444

Query: 267 ISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAH 326
           + W S+I GY +  ++  A  LF  MP R+  +W ++ISG  QN  F++A   F  M A 
Sbjct: 445 VCWNSLISGYSNNSKMVEAEELFKKMPARNVASWNSIISGYAQNRQFIDALKSFHAMLAS 504

Query: 327 GVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNA 386
           G  P   TFS +  A  +  ++++G+ +H  ++K   +  + +   L  MYAK G +D++
Sbjct: 505 GQSPGEITFSSVLLACASLCSLEMGKMVHAKIIKLGIKESIFVGTALSDMYAKSGDLDSS 564

Query: 387 YNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHA 446
             +F  M  R+ V+W +M+ G + +G A E++ +FE M+ +G  PN  TFL IL ACSH+
Sbjct: 565 KRVFYEMPKRNDVAWTAMIQGLAENGFAEESILLFEDMISAGITPNEQTFLAILFACSHS 624

Query: 447 GLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGA 506
           GLV      F  M     I P  +HY  M+++L RAG + EAE+ +L++  + +   W A
Sbjct: 625 GLVEHAMHYFE-MMQACGISPKAKHYTCMVDVLARAGHLAEAEDLLLKIESKSEANSWAA 683

Query: 507 LLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKG 566
           LL AC     N E+ E AAKRL ELD  N   +V+L N+YA+ G+  +  ++R+ M    
Sbjct: 684 LLSACNIYR-NKEMGERAAKRLQELDKDNTAGYVLLSNMYASCGKWKDAAEMRILMKGIN 742

Query: 567 VRKVPGCSWLMRNGGIQMFLS 587
           ++K  GCSW+   G  Q F S
Sbjct: 743 LKKDGGCSWVQIRGQYQAFFS 763



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 79/302 (26%), Positives = 133/302 (44%), Gaps = 38/302 (12%)

Query: 241 MINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAW 300
           M+  +++ G +  A+ LFD +P R  +S+T+M+D  +  G V +A  L+   P      +
Sbjct: 154 MVREHVKAGDIVSARRLFDGMPERSVVSYTTMVDALMKRGSVRDAVELYRQCPLCSVPFF 213

Query: 301 TAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMK 360
           TAMI+G V NEL  +A  +F EM + GV P   T   +  A       DL   I  + MK
Sbjct: 214 TAMIAGFVLNELPKDALGVFHEMLSCGVSPNEITLVSVIKACIGAGEFDLAMSIVGLAMK 273

Query: 361 TE-SESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWN----------------- 402
           +   + +L + N LI++Y + G  D A  +F  M  RD+VSW                  
Sbjct: 274 SNLLDKNLGVRNSLITLYLRKGDADAARRMFDEMEVRDVVSWTALLDVYAELGDLEGARR 333

Query: 403 --------------SMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGL 448
                         ++V      G A E + ++  ML  G  PN   F  +L AC+    
Sbjct: 334 VLDEMPERNEVSWGTLVARHEQKGNAKEAVSLYSQMLADGCRPNISCFSSVLGACASLQD 393

Query: 449 VSRGWELFNAMFDVYKIQPGPEHYVS--MINLLGRAGKIKEAEEFVLRLPFEPDHRIWGA 506
           +  G ++ N      K+      +VS  +I++  +  ++ +A+     LP + +   W +
Sbjct: 394 LRSGRKIHN---QTLKMACSNNVFVSSALIDMYCKCKQLPDAQMIFYSLP-QKNIVCWNS 449

Query: 507 LL 508
           L+
Sbjct: 450 LI 451


>gi|359497788|ref|XP_002273247.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Vitis vinifera]
          Length = 580

 Score =  320 bits (820), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 180/517 (34%), Positives = 284/517 (54%), Gaps = 44/517 (8%)

Query: 125 KVFNSMPIKNVISW-----NAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRA 179
           K+ +S  IK  + +     N +I  Y +C  +  A  +F  +  +N  +W  +IS Y R+
Sbjct: 34  KLLHSHFIKTALIFTTFLANRLIDFYSKCDSIQSAHKVFHVLPVKNTHSWNIIISAYSRS 93

Query: 180 GEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDN---------- 229
           G   E + L  +MP+ N+VS+ ++I G   +GF KESL +F  M   C N          
Sbjct: 94  GLFNEAHNLLDQMPKPNLVSYNSLISGLGHHGFRKESLNVFKTMLKQCSNVLFDEFTLVS 153

Query: 230 ------------------------GNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRD 265
                                   G N N+   N++I+ Y + G  + + ++F  +P RD
Sbjct: 154 LVGSCASLGAPELLRQVHGAAIIIGLNSNIIIGNALIDAYGKCGEPDISFSIFSRMPERD 213

Query: 266 EISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRA 325
            +SWTSM+  Y    ++ +A++LF  M +++ V+WTA+I+G  QN    EA +LF +MR 
Sbjct: 214 VVSWTSMVAAYAQASRLEDAHWLFSQMQEKNTVSWTALIAGFAQNGRGDEALHLFEQMRE 273

Query: 326 HGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKT---ESESDLILENCLISMYAKCGV 382
            G+PP   TF+ +  A    A I  G++IH  ++++   +   ++ + N LI MY KCG 
Sbjct: 274 EGIPPSAFTFASVLSACADLALIARGKEIHGHIIRSTCIDYFCNIFILNALIDMYCKCGQ 333

Query: 383 IDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSA 442
           + +A  +F  M  +D+VSWNS++ GF+ +G   E+L VFE M+E+   PN VTFLG+LSA
Sbjct: 334 MRSATTLFKGMHEKDIVSWNSLITGFAQNGHGEESLAVFERMIEADIRPNHVTFLGLLSA 393

Query: 443 CSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDH- 501
           C H GLVS G  + ++M   Y + P  +HY  MI+LLGR  +++EA   + R P   DH 
Sbjct: 394 CCHTGLVSEGLRILDSMEKDYGVCPRSDHYAIMIDLLGRNNRLEEAMGLIKRAPKGSDHV 453

Query: 502 RIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMD 561
            +WGALLGAC    GN ++A  AA+ L +L+P NA  +V++ NIYAA+ R  E  ++R  
Sbjct: 454 GMWGALLGACRI-HGNMDLARRAAEVLFQLEPGNAARYVMVYNIYAAASRWDEARQVRRL 512

Query: 562 MGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
           M  +G+RK   CSW+        F++ ++   Q+ E+
Sbjct: 513 MMERGLRKEAACSWIEVRNTRHQFVAKERSHCQINEV 549



 Score =  159 bits (401), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 107/354 (30%), Positives = 181/354 (51%), Gaps = 20/354 (5%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWT 77
           I  YSK   I  A  +F ++P +N  S+N ++S + ++G  +EA  L ++MP+ N+VS+ 
Sbjct: 56  IDFYSKCDSIQSAHKVFHVLPVKNTHSWNIIISAYSRSGLFNEAHNLLDQMPKPNLVSYN 115

Query: 78  AMICGLADAGRVCEARKLFEEMPER--NVVSWNSMVVGLIRN----GELNEARKVFNSMP 131
           ++I GL   G   E+  +F+ M ++  NV+     +V L+ +    G     R+V  +  
Sbjct: 116 SLISGLGHHGFRKESLNVFKTMLKQCSNVLFDEFTLVSLVGSCASLGAPELLRQVHGAAI 175

Query: 132 I----KNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYC 187
           I     N+I  NA+I  Y +C     +  +F  M ER+VV+WTSM++ Y +A  +E+ + 
Sbjct: 176 IIGLNSNIIIGNALIDAYGKCGEPDISFSIFSRMPERDVVSWTSMVAAYAQASRLEDAHW 235

Query: 188 LFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIR 247
           LF +M  KN VSWTA+I GFA NG   E+L LF +M+   + G   +  +  S+++    
Sbjct: 236 LFSQMQEKNTVSWTALIAGFAQNGRGDEALHLFEQMR---EEGIPPSAFTFASVLSACAD 292

Query: 248 FGRLEEAQNLFDTVPVRDEISW-------TSMIDGYLSVGQVSNAYYLFHNMPDRDAVAW 300
              +   + +   +     I +        ++ID Y   GQ+ +A  LF  M ++D V+W
Sbjct: 293 LALIARGKEIHGHIIRSTCIDYFCNIFILNALIDMYCKCGQMRSATTLFKGMHEKDIVSW 352

Query: 301 TAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQI 354
            ++I+G  QN    E+  +F  M    + P + TF  L  A   T  +  G +I
Sbjct: 353 NSLITGFAQNGHGEESLAVFERMIEADIRPNHVTFLGLLSACCHTGLVSEGLRI 406



 Score =  129 bits (323), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 90/284 (31%), Positives = 142/284 (50%), Gaps = 34/284 (11%)

Query: 6   HPKSLVVHLTSSI-------TKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRL 58
           H  ++++ L S+I         Y K G  D + ++F  MP+R+VVS+ +M++ + Q  RL
Sbjct: 171 HGAAIIIGLNSNIIIGNALIDAYGKCGEPDISFSIFSRMPERDVVSWTSMVAAYAQASRL 230

Query: 59  SEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPER----------NVVSWN 108
            +A  LF +M E+N VSWTA+I G A  GR  EA  LFE+M E           +V+S  
Sbjct: 231 EDAHWLFSQMQEKNTVSWTALIAGFAQNGRGDEALHLFEQMREEGIPPSAFTFASVLSAC 290

Query: 109 SMVVGLIRNGELNEARKVFNSMPIK---NVISWNAMIAGYVECCMMGEAIVLFEEMEERN 165
           + +  + R  E++    +  S  I    N+   NA+I  Y +C  M  A  LF+ M E++
Sbjct: 291 ADLALIARGKEIHG--HIIRSTCIDYFCNIFILNALIDMYCKCGQMRSATTLFKGMHEKD 348

Query: 166 VVTWTSMISGYCRAGEVEEGYCLFRRM----PRKNVVSWTAMIGGFAWNGFHKESLLLFI 221
           +V+W S+I+G+ + G  EE   +F RM     R N V++  ++      G   E L +  
Sbjct: 349 IVSWNSLITGFAQNGHGEESLAVFERMIEADIRPNHVTFLGLLSACCHTGLVSEGLRILD 408

Query: 222 EMK---GICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVP 262
            M+   G+C   ++  +     MI+   R  RLEEA  L    P
Sbjct: 409 SMEKDYGVCPRSDHYAI-----MIDLLGRNNRLEEAMGLIKRAP 447



 Score = 65.5 bits (158), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 60/246 (24%), Positives = 104/246 (42%), Gaps = 20/246 (8%)

Query: 328 VPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAY 387
           + P +  +S L      T ++ LG+ +H   +KT       L N LI  Y+KC  I +A+
Sbjct: 10  LDPAHQHYSSLISKCITTRHLKLGKLLHSHFIKTALIFTTFLANRLIDFYSKCDSIQSAH 69

Query: 388 NIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAG 447
            +F  +  ++  SWN ++  +S  GL NE   + + M +    PN V++  ++S   H G
Sbjct: 70  KVFHVLPVKNTHSWNIIISAYSRSGLFNEAHNLLDQMPK----PNLVSYNSLISGLGHHG 125

Query: 448 LVSRGWELF--------NAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEP 499
                  +F        N +FD + +       V     LG    +++     + +    
Sbjct: 126 FRKESLNVFKTMLKQCSNVLFDEFTLVS----LVGSCASLGAPELLRQVHGAAIIIGLNS 181

Query: 500 DHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLR 559
           +  I  AL+ A G C G  +I+     R+ E D ++  + V     YA + R  + H L 
Sbjct: 182 NIIIGNALIDAYGKC-GEPDISFSIFSRMPERDVVSWTSMVA---AYAQASRLEDAHWLF 237

Query: 560 MDMGLK 565
             M  K
Sbjct: 238 SQMQEK 243


>gi|356519676|ref|XP_003528496.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Glycine max]
          Length = 728

 Score =  320 bits (819), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 212/663 (31%), Positives = 333/663 (50%), Gaps = 92/663 (13%)

Query: 11  VVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPE 70
           V+    SI +  K G ++EA+ LF  MP R V S+N M+SG+   GR  EA  L   M  
Sbjct: 41  VISTNISIAQRFKMGKLEEARHLFDQMPNRTVSSWNTMISGYSLLGRYPEALTLVSFMHR 100

Query: 71  R----NVVSWTAMICGLADAGR-----------------------------------VCE 91
                N VS++A++   A +G                                    + E
Sbjct: 101 SCVALNEVSFSAVLSACARSGSFLLGKQVHSLLLKSGYERFGLVGSALLYFCVHCCGIRE 160

Query: 92  ARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVE---- 147
           A  +FEE+ + N V W+ M+ G ++   +++A  +F  MP+++V++W  +I+GY +    
Sbjct: 161 AEVVFEELRDGNQVLWSLMLAGYVKQDMMDDAMDMFEKMPVRDVVAWTTLISGYAKREDG 220

Query: 148 C--------CMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVS 199
           C        CM   + VL  E     VV   + + G  RAG+V  G C+   +   N + 
Sbjct: 221 CERALDLFGCMRRSSEVLPNEFTLDCVVRVCARL-GVLRAGKVVHGLCIKGGLDFDNSIG 279

Query: 200 WT-------------------------------AMIGGFAWNGFHKESLLLFIEMKGICD 228
                                            ++IGG    G  +E+ L+F E++    
Sbjct: 280 GAVTEFYCGCEAIDDAKRVYESMGGQASLNVANSLIGGLVSKGRIEEAELVFYELR---- 335

Query: 229 NGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYL 288
                N  S N MI GY   G+ E+++ LF+ +   +  S  +MI  Y   G++  A  L
Sbjct: 336 ---ETNPVSYNLMIKGYAMSGQFEKSKRLFEKMSPENLTSLNTMISVYSKNGELDEAVKL 392

Query: 289 FHNMP-DRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATAN 347
           F     +R+ V+W +M+SG + N  + EA  L++ MR   V    +TFSVLF A     +
Sbjct: 393 FDKTKGERNYVSWNSMMSGYIINGKYKEALNLYVAMRRLSVDYSRSTFSVLFRACSCLCS 452

Query: 348 IDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMG 407
              G+ +H  L+KT  + ++ +   L+  Y+KCG +  A   F ++ S ++ +W +++ G
Sbjct: 453 FRQGQLLHAHLIKTPFQVNVYVGTALVDFYSKCGHLAEAQRSFISIFSPNVAAWTALING 512

Query: 408 FSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQP 467
           +++HGL +E + +F SML  G  PN+ TF+G+LSAC+HAGLV  G  +F++M   Y + P
Sbjct: 513 YAYHGLGSEAILLFRSMLHQGIVPNAATFVGVLSACNHAGLVCEGLRIFHSMQRCYGVTP 572

Query: 468 GPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKR 527
             EHY  +++LLGR+G +KEAEEF++++P E D  IWGALL A  F + + E+ E AA++
Sbjct: 573 TIEHYTCVVDLLGRSGHLKEAEEFIIKMPIEADGIIWGALLNASWFWK-DMEVGERAAEK 631

Query: 528 LLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLS 587
           L  LDP    A VVL N+YA  GR  ++ KLR  +    +RK PGCSW+  N  I +F  
Sbjct: 632 LFSLDPNPIFAFVVLSNMYAILGRWGQKTKLRKRLQSLELRKDPGCSWIELNNKIHLFSV 691

Query: 588 GDK 590
            DK
Sbjct: 692 EDK 694



 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 104/401 (25%), Positives = 176/401 (43%), Gaps = 53/401 (13%)

Query: 132 IKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRR 191
           + NVIS N  IA   +   + EA  LF++M  R V +W +MISGY   G   E   L   
Sbjct: 38  VGNVISTNISIAQRFKMGKLEEARHLFDQMPNRTVSSWNTMISGYSLLGRYPEALTLVSF 97

Query: 192 MPRK----NVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIR 247
           M R     N VS++A++   A +G    S LL  ++  +              + +GY R
Sbjct: 98  MHRSCVALNEVSFSAVLSACARSG----SFLLGKQVHSLL-------------LKSGYER 140

Query: 248 FGR--------------LEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMP 293
           FG               + EA+ +F+ +   +++ W+ M+ GY+    + +A  +F  MP
Sbjct: 141 FGLVGSALLYFCVHCCGIREAEVVFEELRDGNQVLWSLMLAGYVKQDMMDDAMDMFEKMP 200

Query: 294 DRDAVAWTAMISGLVQNELFVE-ATYLFMEM-RAHGVPPLNATFSVLFGAAGATANIDLG 351
            RD VAWT +ISG  + E   E A  LF  M R+  V P   T   +         +  G
Sbjct: 201 VRDVVAWTTLISGYAKREDGCERALDLFGCMRRSSEVLPNEFTLDCVVRVCARLGVLRAG 260

Query: 352 RQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSR-DLVSWNSMVMGFSH 410
           + +H + +K   + D  +   +   Y  C  ID+A  ++ +M  +  L   NS++ G   
Sbjct: 261 KVVHGLCIKGGLDFDNSIGGAVTEFYCGCEAIDDAKRVYESMGGQASLNVANSLIGGLVS 320

Query: 411 HGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPE 470
            G   E   VF  + E+    N V++  ++   + +G   +   LF  M         PE
Sbjct: 321 KGRIEEAELVFYELRET----NPVSYNLMIKGYAMSGQFEKSKRLFEKM--------SPE 368

Query: 471 HYVS---MINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALL 508
           +  S   MI++  + G++ EA +   +   E ++  W +++
Sbjct: 369 NLTSLNTMISVYSKNGELDEAVKLFDKTKGERNYVSWNSMM 409


>gi|356570253|ref|XP_003553304.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like [Glycine max]
          Length = 815

 Score =  320 bits (819), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 202/664 (30%), Positives = 325/664 (48%), Gaps = 87/664 (13%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWT 77
           +  + +RG +  A+ LF  MP +NV+S N M+ G+L++G LS AR LF+ M +R+VV+WT
Sbjct: 49  VQTHLQRGDLGAARKLFDEMPHKNVISTNTMIMGYLKSGNLSTARSLFDSMVQRSVVTWT 108

Query: 78  AMICGLADAGRVCEARKLFEEMPERNVV----SWNSMVVGLIRNGELNEARKV------- 126
            +I G A   R  EA  LF +M    +V    +  +++ G      +NE  +V       
Sbjct: 109 MLIGGYAQHNRFLEAFNLFADMCRHGMVPDHITLATLLSGFTEFESVNEVAQVHGHVVKV 168

Query: 127 ----------------------------FNSMPIKNVISWNAMIAGYVECCMMGEAIVLF 158
                                       F  M  K+ +++NA++ GY +     +AI LF
Sbjct: 169 GYDSTLMVCNSLLDSYCKTRSLGLACHLFKHMAEKDNVTFNALLTGYSKEGFNHDAINLF 228

Query: 159 EEMEER---------------------------------------NVVTWTSMISGYCRA 179
            +M++                                        NV    +++  Y + 
Sbjct: 229 FKMQDLGFRPSEFTFAAVLTAGIQMDDIEFGQQVHSFVVKCNFVWNVFVANALLDFYSKH 288

Query: 180 GEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCN 239
             + E   LF  MP  + +S+  +I   AWNG  +ESL LF E++    +       +  
Sbjct: 289 DRIVEARKLFYEMPEVDGISYNVLITCCAWNGRVEESLELFRELQFTRFDRRQFPFATLL 348

Query: 240 SMINGYIRFGRLEEAQNLFDTVPVRDEIS----WTSMIDGYLSVGQVSNAYYLFHNMPDR 295
           S+    +    LE  + +     V D IS      S++D Y    +   A  +F ++  +
Sbjct: 349 SIAANSLN---LEMGRQIHSQAIVTDAISEVLVGNSLVDMYAKCDKFGEANRIFADLAHQ 405

Query: 296 DAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIH 355
            +V WTA+ISG VQ  L  +   LF+EM    +   +AT++ +  A    A++ LG+Q+H
Sbjct: 406 SSVPWTALISGYVQKGLHEDGLKLFVEMHRAKIGADSATYASILRACANLASLTLGKQLH 465

Query: 356 CVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLAN 415
             ++++   S++   + L+ MYAKCG I  A  +F  M  R+ VSWN+++  ++ +G   
Sbjct: 466 SRIIRSGCLSNVFSGSALVDMYAKCGSIKEALQMFQEMPVRNSVSWNALISAYAQNGDGG 525

Query: 416 ETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSM 475
             L+ FE M+ SG  PNSV+FL IL ACSH GLV  G + FN+M  VYK++P  EHY SM
Sbjct: 526 HALRSFEQMIHSGLQPNSVSFLSILCACSHCGLVEEGLQYFNSMTQVYKLEPRREHYASM 585

Query: 476 INLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPL- 534
           +++L R+G+  EAE+ + R+PFEPD  +W ++L +C     N E+A  AA +L  +  L 
Sbjct: 586 VDMLCRSGRFDEAEKLMARMPFEPDEIMWSSILNSCRI-HKNQELAIKAADQLFNMKGLR 644

Query: 535 NAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQ 594
           +A  +V + NIYAA+G      K++  +  +G+RKVP  SW+       +F + D    Q
Sbjct: 645 DAAPYVSMSNIYAAAGEWDSVGKVKKALRERGIRKVPAYSWVEIKQKTHVFSANDTSHPQ 704

Query: 595 VAEI 598
             EI
Sbjct: 705 TKEI 708



 Score =  192 bits (488), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 129/505 (25%), Positives = 248/505 (49%), Gaps = 27/505 (5%)

Query: 23  KRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICG 82
           KR F     ++ +     N   +N  +   LQ G L  AR+LF+EMP +NV+S   MI G
Sbjct: 23  KRHFQHVDASMIKTGFDPNTCRFNFQVQTHLQRGDLGAARKLFDEMPHKNVISTNTMIMG 82

Query: 83  LADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSM----PIKNVISW 138
              +G +  AR LF+ M +R+VV+W  ++ G  ++    EA  +F  M     + + I+ 
Sbjct: 83  YLKSGNLSTARSLFDSMVQRSVVTWTMLIGGYAQHNRFLEAFNLFADMCRHGMVPDHITL 142

Query: 139 NAMIAGYVECCMMGEAIVLFEEM----EERNVVTWTSMISGYCRAGEVEEGYCLFRRMPR 194
             +++G+ E   + E   +   +     +  ++   S++  YC+   +     LF+ M  
Sbjct: 143 ATLLSGFTEFESVNEVAQVHGHVVKVGYDSTLMVCNSLLDSYCKTRSLGLACHLFKHMAE 202

Query: 195 KNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEA 254
           K+ V++ A++ G++  GF+ +++ LF +M+   D G   +  +  +++   I+   +E  
Sbjct: 203 KDNVTFNALLTGYSKEGFNHDAINLFFKMQ---DLGFRPSEFTFAAVLTAGIQMDDIEFG 259

Query: 255 QNLFDTVPVRDEISW-----TSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQ 309
           Q +   V V+    W      +++D Y    ++  A  LF+ MP+ D +++  +I+    
Sbjct: 260 QQVHSFV-VKCNFVWNVFVANALLDFYSKHDRIVEARKLFYEMPEVDGISYNVLITCCAW 318

Query: 310 NELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLIL 369
           N    E+  LF E++          F+ L   A  + N+++GRQIH   + T++ S++++
Sbjct: 319 NGRVEESLELFRELQFTRFDRRQFPFATLLSIAANSLNLEMGRQIHSQAIVTDAISEVLV 378

Query: 370 ENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGT 429
            N L+ MYAKC     A  IF+++  +  V W +++ G+   GL  + LK+F  M  +  
Sbjct: 379 GNSLVDMYAKCDKFGEANRIFADLAHQSSVPWTALISGYVQKGLHEDGLKLFVEMHRAKI 438

Query: 430 HPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYV----SMINLLGRAGKI 485
             +S T+  IL AC++   ++ G +L + +     I+ G    V    +++++  + G I
Sbjct: 439 GADSATYASILRACANLASLTLGKQLHSRI-----IRSGCLSNVFSGSALVDMYAKCGSI 493

Query: 486 KEAEEFVLRLPFEPDHRIWGALLGA 510
           KEA +    +P   +   W AL+ A
Sbjct: 494 KEALQMFQEMPVR-NSVSWNALISA 517



 Score =  122 bits (305), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 78/290 (26%), Positives = 143/290 (49%), Gaps = 14/290 (4%)

Query: 229 NGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYL 288
            G + N    N  +  +++ G L  A+ LFD +P ++ IS  +MI GYL  G +S A  L
Sbjct: 36  TGFDPNTCRFNFQVQTHLQRGDLGAARKLFDEMPHKNVISTNTMIMGYLKSGNLSTARSL 95

Query: 289 FHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANI 348
           F +M  R  V WT +I G  Q+  F+EA  LF +M  HG+ P + T + L        ++
Sbjct: 96  FDSMVQRSVVTWTMLIGGYAQHNRFLEAFNLFADMCRHGMVPDHITLATLLSGFTEFESV 155

Query: 349 DLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGF 408
           +   Q+H  ++K   +S L++ N L+  Y K   +  A ++F +M  +D V++N+++ G+
Sbjct: 156 NEVAQVHGHVVKVGYDSTLMVCNSLLDSYCKTRSLGLACHLFKHMAEKDNVTFNALLTGY 215

Query: 409 SHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELF------NAMFDV 462
           S  G  ++ + +F  M + G  P+  TF  +L+A      +  G ++       N +++V
Sbjct: 216 SKEGFNHDAINLFFKMQDLGFRPSEFTFAAVLTAGIQMDDIEFGQQVHSFVVKCNFVWNV 275

Query: 463 YKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACG 512
           +          ++++   +  +I EA +    +P E D   +  L+  C 
Sbjct: 276 FVAN-------ALLDFYSKHDRIVEARKLFYEMP-EVDGISYNVLITCCA 317


>gi|356502293|ref|XP_003519954.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Glycine max]
          Length = 1047

 Score =  320 bits (819), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 208/631 (32%), Positives = 321/631 (50%), Gaps = 53/631 (8%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEM------PER 71
           +T YS+ G    A+ +F  M QR+ VSYN+++SG  Q G   +A  LF++M      P+ 
Sbjct: 313 VTLYSRLGNFIPAEQVFNAMLQRDEVSYNSLISGLSQQGYSDKALELFKKMCLDCLKPDC 372

Query: 72  NVVSWTAMIC-----------------------------GLADAGRVCE----ARKLFEE 98
             V+     C                              L D    C     A + F  
Sbjct: 373 VTVASLLSACSSVGALLVGKQFHSYAIKAGMSSDIILEGALLDLYVKCSDIKTAHEFFLS 432

Query: 99  MPERNVVSWNSMVV--GLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIV 156
               NVV WN M+V  GL+ N  LNE+ K+F  M ++ +          +  C    A+ 
Sbjct: 433 TETENVVLWNVMLVAYGLLDN--LNESFKIFTQMQMEGIEPNQFTYPSILRTCSSLRAVD 490

Query: 157 LFEEMEER--------NVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFA 208
           L E++  +        NV   + +I  Y + G+++    +FRR+  K+VVSWTAMI G+A
Sbjct: 491 LGEQIHTQVLKTGFQFNVYVSSVLIDMYAKLGKLDHALKIFRRLKEKDVVSWTAMIAGYA 550

Query: 209 WNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEIS 268
            +    E+L LF EM+    + +N    S  S   G     + ++           D++S
Sbjct: 551 QHEKFAEALNLFKEMQDQGIHSDNIGFASAISACAGIQALNQGQQIHAQACVSGYSDDLS 610

Query: 269 -WTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHG 327
              +++  Y   G+V +AY+ F  +  +D ++W ++ISG  Q+    EA  LF +M   G
Sbjct: 611 VGNALVSLYARCGKVRDAYFAFDKIFSKDNISWNSLISGFAQSGHCEEALSLFSQMSKAG 670

Query: 328 VPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAY 387
               + TF     AA   AN+ LG+QIH +++KT  +S+  + N LI++YAKCG ID+A 
Sbjct: 671 QEINSFTFGPAVSAAANVANVKLGKQIHAMIIKTGHDSETEVSNVLITLYAKCGNIDDAE 730

Query: 388 NIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAG 447
             F  M  ++ +SWN+M+ G+S HG   + L +FE M + G  PN VTF+G+LSACSH G
Sbjct: 731 RQFFEMPEKNEISWNAMLTGYSQHGHGFKALSLFEDMKQLGVLPNHVTFVGVLSACSHVG 790

Query: 448 LVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGAL 507
           LV  G + F +M +V+ + P PEHY  +++LLGR+G +  A  FV  +P +PD  +   L
Sbjct: 791 LVDEGIKYFQSMREVHGLVPKPEHYACVVDLLGRSGLLSRARRFVEEMPIQPDAMVCRTL 850

Query: 508 LGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGV 567
           L AC     N +I E AA  LLEL+P ++  +V+L N+YA +G+     + R  M  +GV
Sbjct: 851 LSAC-IVHKNIDIGEFAASHLLELEPKDSATYVLLSNMYAVTGKWGCRDRTRQMMKDRGV 909

Query: 568 RKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
           +K PG SW+  N  +  F +GD+    V +I
Sbjct: 910 KKEPGRSWIEVNNSVHAFFAGDQKHPNVDKI 940



 Score =  181 bits (460), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 147/544 (27%), Positives = 253/544 (46%), Gaps = 60/544 (11%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEM------PER 71
           I  Y K GF++ AK +F  + +R+ VS+ AMLSG  Q+G   EA  LF +M      P  
Sbjct: 212 IDLYFKNGFLNSAKKVFDGLQKRDSVSWVAMLSGLSQSGCEEEAVLLFCQMHTSGVYPTP 271

Query: 72  NVVSWTAMICGLADAGRVCE---------------------------------ARKLFEE 98
            + S     C   +  +V E                                 A ++F  
Sbjct: 272 YIFSSVLSACTKVEFYKVGEQLHGLVLKQGFSLETYVCNALVTLYSRLGNFIPAEQVFNA 331

Query: 99  MPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLF 158
           M +R+ VS+NS++ GL + G  ++A ++F  M +  +      +A  +  C    A+++ 
Sbjct: 332 MLQRDEVSYNSLISGLSQQGYSDKALELFKKMCLDCLKPDCVTVASLLSACSSVGALLVG 391

Query: 159 EEME--------ERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWN 210
           ++            +++   +++  Y +  +++  +  F     +NVV W  M+  +   
Sbjct: 392 KQFHSYAIKAGMSSDIILEGALLDLYVKCSDIKTAHEFFLSTETENVVLWNVMLVAYGLL 451

Query: 211 GFHKESLLLF--IEMKGICDNGNNCN--VQSCNSMINGYIRFGRLEEAQNLFDTVPVRDE 266
               ES  +F  ++M+GI  N       +++C+S+    +  G     Q L         
Sbjct: 452 DNLNESFKIFTQMQMEGIEPNQFTYPSILRTCSSL--RAVDLGEQIHTQVLKTGFQFNVY 509

Query: 267 ISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAH 326
           +S + +ID Y  +G++ +A  +F  + ++D V+WTAMI+G  Q+E F EA  LF EM+  
Sbjct: 510 VS-SVLIDMYAKLGKLDHALKIFRRLKEKDVVSWTAMIAGYAQHEKFAEALNLFKEMQDQ 568

Query: 327 GVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNA 386
           G+   N  F+    A      ++ G+QIH     +    DL + N L+S+YA+CG + +A
Sbjct: 569 GIHSDNIGFASAISACAGIQALNQGQQIHAQACVSGYSDDLSVGNALVSLYARCGKVRDA 628

Query: 387 YNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHA 446
           Y  F  + S+D +SWNS++ GF+  G   E L +F  M ++G   NS TF   +SA ++ 
Sbjct: 629 YFAFDKIFSKDNISWNSLISGFAQSGHCEEALSLFSQMSKAGQEINSFTFGPAVSAAANV 688

Query: 447 GLVSRGWELFNAMFDVYKIQPGPEHYVS--MINLLGRAGKIKEAEEFVLRLPFEPDHRIW 504
             V  G ++ +AM  + K     E  VS  +I L  + G I +AE     +P E +   W
Sbjct: 689 ANVKLGKQI-HAM--IIKTGHDSETEVSNVLITLYAKCGNIDDAERQFFEMP-EKNEISW 744

Query: 505 GALL 508
            A+L
Sbjct: 745 NAML 748



 Score =  162 bits (410), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 138/557 (24%), Positives = 255/557 (45%), Gaps = 74/557 (13%)

Query: 21  YSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQN---GR-LSEARRLFEEM--PERNVV 74
           Y   G +D A  +F  MP R +  +N +L  F+     GR L   RR+ +E   P+    
Sbjct: 113 YIAFGDLDGAVTVFDEMPVRPLSCWNKVLHRFVAGKMAGRVLGLFRRMLQEKVKPDERTY 172

Query: 75  SWTAMICGLADAGRVCEAR---KLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMP 131
           +     CG  D    C  +   +      E ++   N ++    +NG LN A+KVF+ + 
Sbjct: 173 AGVLRGCGGGDVPFHCVEKIHARTITHGYENSLFVCNPLIDLYFKNGFLNSAKKVFDGLQ 232

Query: 132 IKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNV----VTWTSMISG-----YCRAGE- 181
            ++ +SW AM++G  +     EA++LF +M    V      ++S++S      + + GE 
Sbjct: 233 KRDSVSWVAMLSGLSQSGCEEEAVLLFCQMHTSGVYPTPYIFSSVLSACTKVEFYKVGEQ 292

Query: 182 -----VEEGYCL------------------------FRRMPRKNVVSWTAMIGGFAWNGF 212
                +++G+ L                        F  M +++ VS+ ++I G +  G+
Sbjct: 293 LHGLVLKQGFSLETYVCNALVTLYSRLGNFIPAEQVFNAMLQRDEVSYNSLISGLSQQGY 352

Query: 213 HKESLLLFIEMKGICDNGNNCNVQS----CNSMINGYIRFGRLEEAQNLFDTVPVR---- 264
             ++L LF +M   C   +   V S    C+S+  G +  G+       F +  ++    
Sbjct: 353 SDKALELFKKMCLDCLKPDCVTVASLLSACSSV--GALLVGK------QFHSYAIKAGMS 404

Query: 265 -DEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMI--SGLVQNELFVEATYLFM 321
            D I   +++D Y+    +  A+  F +    + V W  M+   GL+ N    E+  +F 
Sbjct: 405 SDIILEGALLDLYVKCSDIKTAHEFFLSTETENVVLWNVMLVAYGLLDN--LNESFKIFT 462

Query: 322 EMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCG 381
           +M+  G+ P   T+  +     +   +DLG QIH  ++KT  + ++ + + LI MYAK G
Sbjct: 463 QMQMEGIEPNQFTYPSILRTCSSLRAVDLGEQIHTQVLKTGFQFNVYVSSVLIDMYAKLG 522

Query: 382 VIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILS 441
            +D+A  IF  +  +D+VSW +M+ G++ H    E L +F+ M + G H +++ F   +S
Sbjct: 523 KLDHALKIFRRLKEKDVVSWTAMIAGYAQHEKFAEALNLFKEMQDQGIHSDNIGFASAIS 582

Query: 442 ACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDH 501
           AC+    +++G ++ +A   V           ++++L  R GK+++A  F     F  D+
Sbjct: 583 ACAGIQALNQGQQI-HAQACVSGYSDDLSVGNALVSLYARCGKVRDA-YFAFDKIFSKDN 640

Query: 502 RIWGALLGA---CGFCE 515
             W +L+      G CE
Sbjct: 641 ISWNSLISGFAQSGHCE 657



 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 131/521 (25%), Positives = 225/521 (43%), Gaps = 38/521 (7%)

Query: 28  DEAKA----LFQLMPQR----NVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAM 79
           DE +A       LM +R    N  +Y  +L G L +G  S+  +L  ++ +    +   +
Sbjct: 46  DEGEANGINFLHLMEERGVRANSQTYLWLLDGCLSSGWFSDGWKLHGKILKMGFCAEVVL 105

Query: 80  ICGLADA----GRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNV 135
              L D     G +  A  +F+EMP R +  WN ++   +          +F  M  + V
Sbjct: 106 CERLMDLYIAFGDLDGAVTVFDEMPVRPLSCWNKVLHRFVAGKMAGRVLGLFRRMLQEKV 165

Query: 136 ISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWT-----------SMISGYCRAGEVEE 184
                  AG +  C  G+  V F  +E+ +  T T            +I  Y + G +  
Sbjct: 166 KPDERTYAGVLRGCGGGD--VPFHCVEKIHARTITHGYENSLFVCNPLIDLYFKNGFLNS 223

Query: 185 GYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMING 244
              +F  + +++ VSW AM+ G + +G  +E++LLF +M     +G        +S+++ 
Sbjct: 224 AKKVFDGLQKRDSVSWVAMLSGLSQSGCEEEAVLLFCQMH---TSGVYPTPYIFSSVLSA 280

Query: 245 YIRFGRLEEAQNLFDTVPVR----DEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAW 300
             +    +  + L   V  +    +     +++  Y  +G    A  +F+ M  RD V++
Sbjct: 281 CTKVEFYKVGEQLHGLVLKQGFSLETYVCNALVTLYSRLGNFIPAEQVFNAMLQRDEVSY 340

Query: 301 TAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMK 360
            ++ISGL Q     +A  LF +M    + P   T + L  A  +   + +G+Q H   +K
Sbjct: 341 NSLISGLSQQGYSDKALELFKKMCLDCLKPDCVTVASLLSACSSVGALLVGKQFHSYAIK 400

Query: 361 TESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKV 420
               SD+ILE  L+ +Y KC  I  A+  F +  + ++V WN M++ +      NE+ K+
Sbjct: 401 AGMSSDIILEGALLDLYVKCSDIKTAHEFFLSTETENVVLWNVMLVAYGLLDNLNESFKI 460

Query: 421 FESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVS--MINL 478
           F  M   G  PN  T+  IL  CS    V  G ++      V K       YVS  +I++
Sbjct: 461 FTQMQMEGIEPNQFTYPSILRTCSSLRAVDLGEQIHT---QVLKTGFQFNVYVSSVLIDM 517

Query: 479 LGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAE 519
             + GK+  A +   RL  E D   W A++      E  AE
Sbjct: 518 YAKLGKLDHALKIFRRLK-EKDVVSWTAMIAGYAQHEKFAE 557


>gi|225457861|ref|XP_002279169.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g77010, mitochondrial-like [Vitis vinifera]
          Length = 685

 Score =  319 bits (818), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 203/652 (31%), Positives = 317/652 (48%), Gaps = 90/652 (13%)

Query: 8   KSLVVHLTSSITK-----YSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEAR 62
           KS V+H   SI       YS+   + EA+ LF+ MP+RN  S+N M+ G+L++G   ++ 
Sbjct: 34  KSGVLHSVLSIGNRLLQMYSRCNSMREAQQLFEEMPKRNCFSWNTMIEGYLKSGSKGKSL 93

Query: 63  RLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNE 122
            LF+ MP ++  SW  +I G A  G +  AR+LF EMP +N ++WNSM+ G   NG   E
Sbjct: 94  ELFDSMPHKDAFSWNVVISGFAKEGNLEVARRLFNEMPWKNGIAWNSMIHGYACNGRPKE 153

Query: 123 ARKVFNSM---PIKNVISWNAMIAGYVECC-------------------------MMGEA 154
           A  +F  +   P++       ++A  V  C                         ++G +
Sbjct: 154 AVGLFKDLSLNPLERFCGDTFVLATVVGACTNLGALDCGKQIHARIVVDEVEFDSVLGSS 213

Query: 155 IV--------------LFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSW 200
           +V              +   M+E +  + +++ISGY   G + +   +F       VV W
Sbjct: 214 LVNLYGKCGDIDSANHVLNLMKEPDAFSLSALISGYASCGRMNDARRIFCLKSNACVVLW 273

Query: 201 TAMIGGFAWNGFHKESLLLFIEMK---------------------GICDNG--------- 230
            +MI G+  N    E+L LF  M+                     GI D G         
Sbjct: 274 NSMISGYVANNEALEALELFNNMRRKGVQEDYSTFASVLSACSTLGIIDQGIQVHAHVYK 333

Query: 231 ----NNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAY 286
               N+  + S  ++++ Y +  R ++A  LF  +   D I   SMI  Y + G++ +A 
Sbjct: 334 VGFTNDIIIDS--ALVDMYSKCRRPDDACKLFSDLQAYDTILLNSMITVYSNCGRIDDAR 391

Query: 287 YLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATA 346
            +F  MP +  ++W +MI G  QN   +EA  LF EM   G+     + + +  A  + +
Sbjct: 392 QIFDTMPSKSLISWNSMIVGFSQNACPIEALDLFCEMNKLGLRMDKFSLAGVISACASIS 451

Query: 347 NIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVM 406
           +++LG QI         E D I+   L+  Y KCG++++   +F  M+  D V WNSM+M
Sbjct: 452 SLELGEQIFARATIIGLEFDQIISTSLVDFYCKCGLVEHGRKLFDRMMKSDEVPWNSMLM 511

Query: 407 GFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQ 466
           G++ +G   E L VF+ M   G  P  +TF+G+LSAC H GLV  G + F AM   Y I 
Sbjct: 512 GYATNGHGIEALNVFDQMRSVGVQPTDITFVGVLSACDHCGLVEEGRKWFYAMKLDYHIN 571

Query: 467 PGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAK 526
           PG EHY  M++L  RAG +++A   + ++P + D  +W ++L  C    GN  + +  AK
Sbjct: 572 PGIEHYSCMVDLYARAGLLEDAMNLIEQMPLKADTSMWSSVLRGC-VAHGNNILGKKVAK 630

Query: 527 RLLELDPLNAPAHVVLCNIYAAS---GRHVEEHKLRMDMGLKGVRKVPGCSW 575
           R+++LDP N+ A+V L  IYA     GR  +  KL  D   K + KVPGCSW
Sbjct: 631 RIIDLDPENSGAYVQLSGIYATFEDWGRSAQVRKLMYD---KKIPKVPGCSW 679


>gi|326522488|dbj|BAK07706.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 799

 Score =  319 bits (817), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 195/621 (31%), Positives = 310/621 (49%), Gaps = 63/621 (10%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWT 77
           + ++ K G I  A+ LF  MP+R+VVSY  M+   ++ GR++EA  L+E+ P  +V  +T
Sbjct: 159 VHEHVKAGDIASARGLFDGMPERSVVSYTTMVDALMKRGRVAEAVELYEQCPSGSVAFFT 218

Query: 78  AMICGLADAGRVCEARKLFEEMP------------------------------------- 100
           A I G         A  +F +M                                      
Sbjct: 219 ATISGFVRNELHHNALGVFRKMVSCGVRPNGITFVCMIKACVGAGEFGLAMSIVGSAIKS 278

Query: 101 ---ERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVL 157
              E ++   NS++   +R G+   ARKVF+ M +K+V+SW A++  Y E   +  A  +
Sbjct: 279 NFFESSIEVQNSLITLYLRMGDAAAARKVFDEMDVKDVVSWTALLDVYSESGDLDGARRV 338

Query: 158 FEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRM----PRKNVVSWTAMIGGFAW---- 209
            + M ERN V+W ++I+ + + G   E   L+ +M     R N+  +++++   A     
Sbjct: 339 LDAMPERNEVSWGTLIARHEQRGNAAEAVKLYSQMLADGCRPNISCFSSVLSACATLEDL 398

Query: 210 ---NGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDE 266
                 H  SL +          G++ NV   +S+I+ Y +  +  +AQ +FDT+P ++ 
Sbjct: 399 RGGARIHARSLKM----------GSSTNVFVSSSLIDMYCKCKKCRDAQTIFDTLPEKNI 448

Query: 267 ISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAH 326
           + W S+  GY   G++  A YLF  MP R+  +W  +ISG  QN  FV+A   F  M A 
Sbjct: 449 VCWNSLASGYSYNGKMVEAMYLFKKMPARNLASWNTIISGYAQNRQFVDALRSFNAMLAS 508

Query: 327 GVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNA 386
           G  P   TFS +  A     ++  G+  H   +K   E  + +   L  MYAK G + ++
Sbjct: 509 GQVPGEITFSSVLLACANLCSLVTGKMAHAKTIKLGMEESIFIGTALSDMYAKSGDLQSS 568

Query: 387 YNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHA 446
             +F  M  R+ V+W +M+ G + +GLA E++ +FE M+ +G  PN  TFL +L ACSH 
Sbjct: 569 KRMFYQMPERNDVTWTAMIQGLAENGLAEESILLFEDMMATGMTPNEHTFLALLFACSHG 628

Query: 447 GLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGA 506
           GLV +    F  M   + I P  +HY  M+++L RAG++ EAE  +++ P + +   W A
Sbjct: 629 GLVEQAIHYFEKM-QAWGISPKEKHYTCMVDVLARAGRLIEAEALLMKTPSKSEANSWAA 687

Query: 507 LLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKG 566
           LL AC   + N EI E AAKRL EL   N   +V+L N+YA+ GR  +  ++R+ M    
Sbjct: 688 LLSACNTYK-NEEIGERAAKRLHELGKDNTAGYVLLSNMYASCGRWKDAARIRVLMKGTT 746

Query: 567 VRKVPGCSWLMRNGGIQMFLS 587
           ++K  GCSW+   G    F S
Sbjct: 747 LKKDGGCSWVQVRGQYHAFFS 767



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 113/441 (25%), Positives = 203/441 (46%), Gaps = 74/441 (16%)

Query: 136 ISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRK 195
            +++ M+  +V+   +  A  LF+ M ER+VV++T+M+    + G V E   L+ + P  
Sbjct: 153 FTYDFMVHEHVKAGDIASARGLFDGMPERSVVSYTTMVDALMKRGRVAEAVELYEQCPSG 212

Query: 196 NVVSWTAMIGGFAWNGFHKESLLLFIEMK--GICDNGNN--CNVQSC------------- 238
           +V  +TA I GF  N  H  +L +F +M   G+  NG    C +++C             
Sbjct: 213 SVAFFTATISGFVRNELHHNALGVFRKMVSCGVRPNGITFVCMIKACVGAGEFGLAMSIV 272

Query: 239 ----------------NSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQV 282
                           NS+I  Y+R G    A+ +FD + V+D +SWT+++D Y   G +
Sbjct: 273 GSAIKSNFFESSIEVQNSLITLYLRMGDAAAARKVFDEMDVKDVVSWTALLDVYSESGDL 332

Query: 283 SNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAA 342
             A  +   MP+R+ V+W  +I+   Q     EA  L+ +M A G  P  + FS +  A 
Sbjct: 333 DGARRVLDAMPERNEVSWGTLIARHEQRGNAAEAVKLYSQMLADGCRPNISCFSSVLSAC 392

Query: 343 GATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWN 402
               ++  G +IH   +K  S +++ + + LI MY KC    +A  IF  +  +++V WN
Sbjct: 393 ATLEDLRGGARIHARSLKMGSSTNVFVSSSLIDMYCKCKKCRDAQTIFDTLPEKNIVCWN 452

Query: 403 SMVMGFSHHG----------------LAN---------------ETLKVFESMLESGTHP 431
           S+  G+S++G                LA+               + L+ F +ML SG  P
Sbjct: 453 SLASGYSYNGKMVEAMYLFKKMPARNLASWNTIISGYAQNRQFVDALRSFNAMLASGQVP 512

Query: 432 NSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYV----SMINLLGRAGKIKE 487
             +TF  +L AC++   +  G      M     I+ G E  +    ++ ++  ++G ++ 
Sbjct: 513 GEITFSSVLLACANLCSLVTG-----KMAHAKTIKLGMEESIFIGTALSDMYAKSGDLQS 567

Query: 488 AEEFVLRLPFEPDHRIWGALL 508
           ++    ++P E +   W A++
Sbjct: 568 SKRMFYQMP-ERNDVTWTAMI 587


>gi|224107977|ref|XP_002314675.1| predicted protein [Populus trichocarpa]
 gi|222863715|gb|EEF00846.1| predicted protein [Populus trichocarpa]
          Length = 845

 Score =  319 bits (817), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 190/584 (32%), Positives = 315/584 (53%), Gaps = 26/584 (4%)

Query: 32  ALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCE 91
           A+ ++  +R++   N+++  + + G +   RR+F++M ERNVVSWT++I G A  G   E
Sbjct: 164 AIVKMGFERDMFVENSLIHFYGECGEIDCMRRVFDKMSERNVVSWTSLIGGYAKRGCYKE 223

Query: 92  ARKLFEEMPERNVVSWNSMVVGLI----RNGELNEARKV---FNSMPIK-NVISWNAMIA 143
           A  LF EM E  +   +  +VG+I    +  +L    +V      + ++ N +  NA++ 
Sbjct: 224 AVSLFFEMVEVGIRPNSVTMVGVISACAKLQDLQLGEQVCTCIGELELEVNALMVNALVD 283

Query: 144 GYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRM----PRKNVVS 199
            Y++C  + +A  +F+E  ++N+V + +++S Y R G   E   +   M    PR + ++
Sbjct: 284 MYMKCGAIDKARKIFDECVDKNLVLYNTIMSNYVRQGLAREVLAVLGEMLKHGPRPDRIT 343

Query: 200 WTAMIGGFAWNGFHKESLLLFIEMKGICD-----NGNNCNVQSCNSMINGYIRFGRLEEA 254
             + +           S L  +     C      NG       CN++IN Y++ G+ E A
Sbjct: 344 MLSAVSAC--------SELDDVSCGKWCHGYVLRNGLEGWDNVCNAIINMYMKCGKQEMA 395

Query: 255 QNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFV 314
             +FD +  +  +SW S+I G++  G + +A+ +F  MPD D V+W  MI  LVQ  +F 
Sbjct: 396 CRVFDRMLNKTRVSWNSLIAGFVRNGDMESAWKIFSAMPDSDLVSWNTMIGALVQESMFK 455

Query: 315 EATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLI 374
           EA  LF  M++ G+     T   +  A G    +DL + IH  + K +   D+ L   L+
Sbjct: 456 EAIELFRVMQSEGITADKVTMVGVASACGYLGALDLAKWIHGYIKKKDIHFDMHLGTALV 515

Query: 375 SMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSV 434
            M+A+CG   +A  +F+ MV RD+ +W + +   +  G     +++F+ ML+ G  P+ V
Sbjct: 516 DMFARCGDPQSAMQVFNKMVKRDVSAWTAAIGAMAMEGNGTGAIELFDEMLQQGIKPDGV 575

Query: 435 TFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLR 494
            F+ +L+A SH GLV +GW +F +M D+Y I P   HY  M++LLGRAG + EA   +  
Sbjct: 576 VFVALLTALSHGGLVEQGWHIFRSMKDIYGIAPQAVHYGCMVDLLGRAGLLSEALSLINS 635

Query: 495 LPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVE 554
           +  EP+  IWG+LL AC     N +IA +AA+R+ ELDP     HV+L NIYA++GR  +
Sbjct: 636 MQMEPNDVIWGSLLAACRV-HKNVDIAAYAAERISELDPERTGIHVLLSNIYASAGRWDD 694

Query: 555 EHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
             K+R+ +  KG  K+PG S +  NG I  F +GD+   ++  I
Sbjct: 695 VAKVRLHLKEKGAHKMPGSSSIEINGKIFEFTTGDESHPEMTHI 738



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 138/567 (24%), Positives = 232/567 (40%), Gaps = 114/567 (20%)

Query: 1   MSERNHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGF------LQ 54
           MSERN     VV  TS I  Y+KRG   EA +LF  M +  +   +  + G       LQ
Sbjct: 200 MSERN-----VVSWTSLIGGYAKRGCYKEAVSLFFEMVEVGIRPNSVTMVGVISACAKLQ 254

Query: 55  NGRLSE--ARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVV 112
           + +L E     + E   E N +   A++      G + +ARK+F+E  ++N+V +N+++ 
Sbjct: 255 DLQLGEQVCTCIGELELEVNALMVNALVDMYMKCGAIDKARKIFDECVDKNLVLYNTIMS 314

Query: 113 GLIRNGELNEARKVFNSM----PIKNVIS------------------W------------ 138
             +R G   E   V   M    P  + I+                  W            
Sbjct: 315 NYVRQGLAREVLAVLGEMLKHGPRPDRITMLSAVSACSELDDVSCGKWCHGYVLRNGLEG 374

Query: 139 -----NAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMP 193
                NA+I  Y++C     A  +F+ M  +  V+W S+I+G+ R G++E  + +F  MP
Sbjct: 375 WDNVCNAIINMYMKCGKQEMACRVFDRMLNKTRVSWNSLIAGFVRNGDMESAWKIFSAMP 434

Query: 194 RKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEE 253
             ++VSW  MIG        KE++ LF  M+      +   +    S   GY+  G L+ 
Sbjct: 435 DSDLVSWNTMIGALVQESMFKEAIELFRVMQSEGITADKVTMVGVASAC-GYL--GALDL 491

Query: 254 AQNLFDTVPVRDEISW-----TSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLV 308
           A+ +   +  +D I +     T+++D +   G   +A  +F+ M  RD  AWTA I  + 
Sbjct: 492 AKWIHGYIKKKD-IHFDMHLGTALVDMFARCGDPQSAMQVFNKMVKRDVSAWTAAIGAMA 550

Query: 309 QNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLI 368
                  A  LF EM   G+ P    F  L  A                           
Sbjct: 551 MEGNGTGAIELFDEMLQQGIKPDGVVFVALLTA--------------------------- 583

Query: 369 LENCLISMYAKCGVIDNAYNIFSNM-----VSRDLVSWNSMVMGFSHHGLANETLKVFES 423
                    +  G+++  ++IF +M     ++   V +  MV      GL +E L +  S
Sbjct: 584 --------LSHGGLVEQGWHIFRSMKDIYGIAPQAVHYGCMVDLLGRAGLLSEALSLINS 635

Query: 424 MLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKI-QPGPEH---YVSMINLL 479
           M      PN V +  +L+AC     V +  ++  A +   +I +  PE    +V + N+ 
Sbjct: 636 M---QMEPNDVIWGSLLAACR----VHKNVDI--AAYAAERISELDPERTGIHVLLSNIY 686

Query: 480 GRAGKIKEAEEFVLRLPFEPDHRIWGA 506
             AG+  +  +  L L  +  H++ G+
Sbjct: 687 ASAGRWDDVAKVRLHLKEKGAHKMPGS 713



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 50/145 (34%), Positives = 81/145 (55%)

Query: 300 WTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLM 359
           ++++I G     L  +A  +F ++   G  P N TF  +  A   +A +  G Q+H  ++
Sbjct: 107 FSSLIRGFSACGLGYKAIVVFRQLMCMGAVPDNFTFPFVLSACTKSAALTEGFQVHGAIV 166

Query: 360 KTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLK 419
           K   E D+ +EN LI  Y +CG ID    +F  M  R++VSW S++ G++  G   E + 
Sbjct: 167 KMGFERDMFVENSLIHFYGECGEIDCMRRVFDKMSERNVVSWTSLIGGYAKRGCYKEAVS 226

Query: 420 VFESMLESGTHPNSVTFLGILSACS 444
           +F  M+E G  PNSVT +G++SAC+
Sbjct: 227 LFFEMVEVGIRPNSVTMVGVISACA 251



 Score = 43.1 bits (100), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 25/87 (28%), Positives = 50/87 (57%), Gaps = 5/87 (5%)

Query: 401 WNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMF 460
           ++S++ GFS  GL  + + VF  ++  G  P++ TF  +LSAC+ +  ++ G+++  A  
Sbjct: 107 FSSLIRGFSACGLGYKAIVVFRQLMCMGAVPDNFTFPFVLSACTKSAALTEGFQVHGA-- 164

Query: 461 DVYKIQPGPEHYV--SMINLLGRAGKI 485
            + K+    + +V  S+I+  G  G+I
Sbjct: 165 -IVKMGFERDMFVENSLIHFYGECGEI 190


>gi|310656753|gb|ADP02188.1| PPR domain-containing protein [Triticum aestivum]
          Length = 788

 Score =  319 bits (817), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 196/621 (31%), Positives = 309/621 (49%), Gaps = 63/621 (10%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWT 77
           ++++ K G I  A+ LF  MP R VVSY  M+   ++ GR++EA  L+E+ P  +V  +T
Sbjct: 156 VSEHVKAGDIASARRLFDGMPDRTVVSYTTMVDALMKRGRVAEAVELYEQCPSGSVAFFT 215

Query: 78  AMICGLADAGRVCEARKLFEEM------P------------------------------- 100
           A I G         A  +F +M      P                               
Sbjct: 216 ATISGFVRNELHHNALGVFRKMLSCRVRPNGITIVCMIKACVGAGEFGLALSIVGLAIKS 275

Query: 101 ---ERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVL 157
              E ++   NS++   +R G+   ARKVF+ M +K+V+SW A++  Y E   +  A  +
Sbjct: 276 NFFESSIEVQNSLITLYLRMGDAAAARKVFDEMDVKDVVSWTALLDVYSESGDLDGARRV 335

Query: 158 FEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRM----PRKNVVSWTAMIGGFA----- 208
            + M ERN V+W ++I+ + + G   E   L+ +M     R N+  +++++   A     
Sbjct: 336 LDAMPERNEVSWGTLIARHEQRGNAAEAVKLYSQMLADGCRPNISCFSSVLSACASLEDL 395

Query: 209 --WNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDE 266
                 H  SL +          G++ NV    S+I+ Y +  +  +AQ +FDT+P ++ 
Sbjct: 396 RGGARIHARSLKM----------GSSTNVFVSCSLIDMYCKCNKCGDAQTIFDTLPQKNI 445

Query: 267 ISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAH 326
           + W S++ GY   G++  A YLF  MP R+  +W  +ISG  QN  FV+A   F  M A 
Sbjct: 446 VCWNSLVSGYSYNGKMVEAMYLFKKMPARNLASWNTIISGYAQNRQFVDALKSFNAMLAS 505

Query: 327 GVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNA 386
           G  P   TFS +  A     ++  G+  H   +K   E  + +   L  MYAK G + ++
Sbjct: 506 GQVPGEITFSSVLLACANLCSLVTGKMAHAKTIKLGIEESIFIGTALSDMYAKSGDLQSS 565

Query: 387 YNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHA 446
             +F  M  R+ V+W +M+ G + +G A E++ +FE M+ +G  PN  TFL +L ACSH 
Sbjct: 566 KRMFYQMPERNDVTWTAMIQGLAENGFAEESILLFEDMMATGMTPNEHTFLALLFACSHG 625

Query: 447 GLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGA 506
           GLV +    F+ M     I P  +HY  M+++L RAG++ EAE  +++ P + +   W A
Sbjct: 626 GLVEQAIHYFDKM-QALGISPKEKHYTCMVDVLARAGRLAEAEALLMKTPSKSEANSWAA 684

Query: 507 LLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKG 566
           LL AC     N EIAE AAKRL EL   N   +V+L N+YA+ GR  +  ++R+ M    
Sbjct: 685 LLSACNTYR-NEEIAERAAKRLHELAKDNTAGYVLLSNMYASCGRWKDAARIRVLMKGTT 743

Query: 567 VRKVPGCSWLMRNGGIQMFLS 587
           ++K  GCSW+   G    F S
Sbjct: 744 LKKDGGCSWVQVRGQYHAFFS 764



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 117/451 (25%), Positives = 206/451 (45%), Gaps = 77/451 (17%)

Query: 136 ISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRK 195
            +++ M++ +V+   +  A  LF+ M +R VV++T+M+    + G V E   L+ + P  
Sbjct: 150 FAYDFMVSEHVKAGDIASARRLFDGMPDRTVVSYTTMVDALMKRGRVAEAVELYEQCPSG 209

Query: 196 NVVSWTAMIGGFAWNGFHKESLLLFIEMKG--ICDNGNN--CNVQSC------------- 238
           +V  +TA I GF  N  H  +L +F +M    +  NG    C +++C             
Sbjct: 210 SVAFFTATISGFVRNELHHNALGVFRKMLSCRVRPNGITIVCMIKACVGAGEFGLALSIV 269

Query: 239 ----------------NSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQV 282
                           NS+I  Y+R G    A+ +FD + V+D +SWT+++D Y   G +
Sbjct: 270 GLAIKSNFFESSIEVQNSLITLYLRMGDAAAARKVFDEMDVKDVVSWTALLDVYSESGDL 329

Query: 283 SNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAA 342
             A  +   MP+R+ V+W  +I+   Q     EA  L+ +M A G  P  + FS +  A 
Sbjct: 330 DGARRVLDAMPERNEVSWGTLIARHEQRGNAAEAVKLYSQMLADGCRPNISCFSSVLSAC 389

Query: 343 GATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWN 402
            +  ++  G +IH   +K  S +++ +   LI MY KC    +A  IF  +  +++V WN
Sbjct: 390 ASLEDLRGGARIHARSLKMGSSTNVFVSCSLIDMYCKCNKCGDAQTIFDTLPQKNIVCWN 449

Query: 403 SMVMGFSHHG----------------LAN---------------ETLKVFESMLESGTHP 431
           S+V G+S++G                LA+               + LK F +ML SG  P
Sbjct: 450 SLVSGYSYNGKMVEAMYLFKKMPARNLASWNTIISGYAQNRQFVDALKSFNAMLASGQVP 509

Query: 432 NSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYV----SMINLLGRAGKIKE 487
             +TF  +L AC++   +  G      M     I+ G E  +    ++ ++  ++G ++ 
Sbjct: 510 GEITFSSVLLACANLCSLVTG-----KMAHAKTIKLGIEESIFIGTALSDMYAKSGDLQS 564

Query: 488 AEEFVLRLPFEPDHRIWGAL---LGACGFCE 515
           ++    ++P E +   W A+   L   GF E
Sbjct: 565 SKRMFYQMP-ERNDVTWTAMIQGLAENGFAE 594


>gi|255586261|ref|XP_002533783.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223526284|gb|EEF28596.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 672

 Score =  319 bits (817), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 210/636 (33%), Positives = 326/636 (51%), Gaps = 57/636 (8%)

Query: 15  TSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVV 74
           +S I  Y++ G I++A+ LF  MP ++ V +N ML+GF++ G  + A ++FE+M  RN  
Sbjct: 11  SSLIKLYAENGCIEDARRLFDKMPNKDCVLWNVMLNGFVKCGEPNSAVKVFEDM--RNCQ 68

Query: 75  SWTAMICGLADAGRVC--EARKLFEEMPERNVVSW---------NSMVVGLIRNGELNEA 123
           +    I   A    +C  EA   F       V+S          N++V    + G+L++A
Sbjct: 69  TKPNSIT-FASVLSICASEALSEFGNQLHGLVISCGFHFDPLVANALVAMYSKFGQLSDA 127

Query: 124 RKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNV----VTWTSMI-----S 174
            K+FN+MP  NV++WN MIAG+V+   M EA +LF EM    V    +T+ S +     S
Sbjct: 128 LKLFNTMPDTNVVTWNGMIAGFVQNGFMDEASLLFSEMISAGVSPDSITFASFLPSVTES 187

Query: 175 GYCRAGEVEEGYCL------------------------------FRRMPRKNVVSWTAMI 204
              + G+   GY L                              F++    ++V  TA+I
Sbjct: 188 ASLKQGKEIHGYILRHGIALDVFLKSALIDIYFKCRDVGMACKIFKQSTNVDIVVCTAII 247

Query: 205 GGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGY--IRFGRLEEAQNLFDTVP 262
            G+  NG + ++L +F  +     + N   + S      G   +  G+   A  L   + 
Sbjct: 248 SGYVLNGLNNDALEIFRWLLEEKMSPNAVTLASVLPACAGLATLNLGKELHANILKHGLD 307

Query: 263 VRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFME 322
            R  +  ++++D Y   G++  AY +F  MP++DAV W A+I+   QN    EA  LF +
Sbjct: 308 ERRHVG-SAIMDMYAKCGRLDLAYQIFRRMPEKDAVCWNAIITNCSQNGKPQEAIDLFRQ 366

Query: 323 MRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGV 382
           M   G+     + S    A      +  G+ IH  ++K   +S++  E+ LI MY KCG 
Sbjct: 367 MGREGLSYDCVSISAALSACANLPALHHGKAIHSFMIKGAFDSEVFAESALIDMYGKCGN 426

Query: 383 IDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSA 442
           +  A  +F  M  ++ VSWNS++  +  HG    +L +F  MLE G  P+ VTFL ILSA
Sbjct: 427 LSVARCVFDMMREKNEVSWNSIIAAYGSHGHLEVSLALFHKMLEDGIQPDHVTFLTILSA 486

Query: 443 CSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHR 502
           C HAG V +G + F  M + Y I    EHY  +++L GRAG++ EA E +  +PF PD  
Sbjct: 487 CGHAGQVDKGIQYFRCMTEEYGIPARMEHYACIVDLFGRAGRLNEAFETIKNMPFSPDDG 546

Query: 503 IWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDM 562
           +WG LLGAC    GN E+AE A++ LL+LDP N+  +V+L N++A +G+     K+R  M
Sbjct: 547 VWGTLLGACRV-HGNVELAEVASRCLLDLDPENSGCYVLLSNVHADAGQWGSVRKIRSLM 605

Query: 563 GLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
             +GV+KVPG SW+  N    MF++ D    + A+I
Sbjct: 606 KKRGVQKVPGYSWIEVNKTTHMFVAADGSHPESAQI 641



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 56/191 (29%), Positives = 102/191 (53%)

Query: 265 DEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMR 324
           DE   +S+I  Y   G + +A  LF  MP++D V W  M++G V+      A  +F +MR
Sbjct: 6   DEFVGSSLIKLYAENGCIEDARRLFDKMPNKDCVLWNVMLNGFVKCGEPNSAVKVFEDMR 65

Query: 325 AHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVID 384
                P + TF+ +     + A  + G Q+H +++      D ++ N L++MY+K G + 
Sbjct: 66  NCQTKPNSITFASVLSICASEALSEFGNQLHGLVISCGFHFDPLVANALVAMYSKFGQLS 125

Query: 385 NAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACS 444
           +A  +F+ M   ++V+WN M+ GF  +G  +E   +F  M+ +G  P+S+TF   L + +
Sbjct: 126 DALKLFNTMPDTNVVTWNGMIAGFVQNGFMDEASLLFSEMISAGVSPDSITFASFLPSVT 185

Query: 445 HAGLVSRGWEL 455
            +  + +G E+
Sbjct: 186 ESASLKQGKEI 196



 Score =  105 bits (262), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 97/434 (22%), Positives = 197/434 (45%), Gaps = 37/434 (8%)

Query: 7   PKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNV----VSYNAMLSGFLQNGRLSEAR 62
           P + VV     I  + + GF+DEA  LF  M    V    +++ + L    ++  L + +
Sbjct: 135 PDTNVVTWNGMIAGFVQNGFMDEASLLFSEMISAGVSPDSITFASFLPSVTESASLKQGK 194

Query: 63  RLFEEMPERNVVSWTAMICGLADAGRVCE----ARKLFEEMPERNVVSWNSMVVGLIRNG 118
            +   +    +     +   L D    C     A K+F++    ++V   +++ G + NG
Sbjct: 195 EIHGYILRHGIALDVFLKSALIDIYFKCRDVGMACKIFKQSTNVDIVVCTAIISGYVLNG 254

Query: 119 ELNEARKVFNSMPIKNVISWNAM-IAGYVECCM------MGE---AIVLFEEMEERNVVT 168
             N+A ++F  + ++  +S NA+ +A  +  C       +G+   A +L   ++ER  V 
Sbjct: 255 LNNDALEIFRWL-LEEKMSPNAVTLASVLPACAGLATLNLGKELHANILKHGLDERRHVG 313

Query: 169 WTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICD 228
            ++++  Y + G ++  Y +FRRMP K+ V W A+I   + NG  +E++ LF +M     
Sbjct: 314 -SAIMDMYAKCGRLDLAYQIFRRMPEKDAVCWNAIITNCSQNGKPQEAIDLFRQMG---R 369

Query: 229 NGNNCNVQSCNSMINGYIRFGRLEEAQNL--------FDTVPVRDEISWTSMIDGYLSVG 280
            G + +  S ++ ++       L   + +        FD+    +  + +++ID Y   G
Sbjct: 370 EGLSYDCVSISAALSACANLPALHHGKAIHSFMIKGAFDS----EVFAESALIDMYGKCG 425

Query: 281 QVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFG 340
            +S A  +F  M +++ V+W ++I+    +     +  LF +M   G+ P + TF  +  
Sbjct: 426 NLSVARCVFDMMREKNEVSWNSIIAAYGSHGHLEVSLALFHKMLEDGIQPDHVTFLTILS 485

Query: 341 AAGATANIDLGRQ-IHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNM-VSRDL 398
           A G    +D G Q   C+  +    + +    C++ ++ + G ++ A+    NM  S D 
Sbjct: 486 ACGHAGQVDKGIQYFRCMTEEYGIPARMEHYACIVDLFGRAGRLNEAFETIKNMPFSPDD 545

Query: 399 VSWNSMVMGFSHHG 412
             W +++     HG
Sbjct: 546 GVWGTLLGACRVHG 559


>gi|224106277|ref|XP_002314110.1| predicted protein [Populus trichocarpa]
 gi|222850518|gb|EEE88065.1| predicted protein [Populus trichocarpa]
          Length = 738

 Score =  319 bits (817), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 190/555 (34%), Positives = 289/555 (52%), Gaps = 51/555 (9%)

Query: 81  CGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGE-----------LNEARKVFNS 129
           C L+    +  A K+F+++P  N+ +WN+++     + +           L+E+++  NS
Sbjct: 72  CALSSPSSLDYACKVFDQIPRPNLYTWNTLIRAFASSPKPIQGLLVFIQMLHESQRFPNS 131

Query: 130 MPIKNVISWNAMIAGYVECCMMGEAI--VLFEEMEERNVVTWTSMISGYCRAGEVEEGYC 187
                VI      A  V   + G+AI  ++ +     ++    S+I  Y   G+++  Y 
Sbjct: 132 YTFPFVIK----AATEVSSLLAGQAIHGMVMKASFGSDLFISNSLIHFYSSLGDLDSAYL 187

Query: 188 LFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMK------------GI--------- 226
           +F ++  K++VSW +MI GF   G  +E+L LF  MK            G+         
Sbjct: 188 VFSKIVEKDIVSWNSMISGFVQGGSPEEALQLFKRMKMENARPNRVTMVGVLSACAKRID 247

Query: 227 -------CD----NGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDG 275
                  CD    NG + N+   N+M++ Y++ G LE+A+ LFD +  +D +SWT+MIDG
Sbjct: 248 LEFGRWACDYIERNGIDINLILSNAMLDMYVKCGSLEDARRLFDKMEEKDIVSWTTMIDG 307

Query: 276 YLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAH-GVPPLNAT 334
           Y  VG    A  +F  MP  D  AW A+IS   QN    EA  +F E++ +    P   T
Sbjct: 308 YAKVGDYDAARRVFDVMPREDITAWNALISSYQQNGKPKEALAIFRELQLNKNTKPNEVT 367

Query: 335 FSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMV 394
            +    A      +DLG  IH  + K   + +  +   LI MY+KCG ++ A  +F ++ 
Sbjct: 368 LASTLAACAQLGAMDLGGWIHVYIKKQGIKLNFHITTSLIDMYSKCGHLEKALEVFYSVE 427

Query: 395 SRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWE 454
            RD+  W++M+ G + HG     + +F  M E+   PN+VTF  +L ACSH+GLV  G  
Sbjct: 428 RRDVFVWSAMIAGLAMHGHGRAAIDLFSKMQETKVKPNAVTFTNLLCACSHSGLVDEGRL 487

Query: 455 LFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFC 514
            FN M  VY + PG +HY  M+++LGRAG ++EA E + ++P  P   +WGALLGAC   
Sbjct: 488 FFNQMRPVYGVVPGSKHYACMVDILGRAGCLEEAVELIEKMPIVPSASVWGALLGACRI- 546

Query: 515 EGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCS 574
            GN E+AE A  RLLE D  N  A+V+L NIYA +G+     +LR  M + G+ K PGCS
Sbjct: 547 YGNVELAEMACSRLLETDSNNHGAYVLLSNIYAKAGKWDCVSRLRQHMKVSGLEKEPGCS 606

Query: 575 WLMRNGGIQMFLSGD 589
            +  NG I  FL GD
Sbjct: 607 SIEVNGIIHEFLVGD 621



 Score =  139 bits (351), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 94/321 (29%), Positives = 163/321 (50%), Gaps = 18/321 (5%)

Query: 46  NAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVV 105
           N+++  +   G L  A  +F ++ E+++VSW +MI G    G   EA +LF+ M   N  
Sbjct: 170 NSLIHFYSSLGDLDSAYLVFSKIVEKDIVSWNSMISGFVQGGSPEEALQLFKRMKMENAR 229

Query: 106 SWNSMVVGLI----RNGELNEARKVF-----NSMPIKNVISWNAMIAGYVECCMMGEAIV 156
                +VG++    +  +L   R        N + I N+I  NAM+  YV+C  + +A  
Sbjct: 230 PNRVTMVGVLSACAKRIDLEFGRWACDYIERNGIDI-NLILSNAMLDMYVKCGSLEDARR 288

Query: 157 LFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKES 216
           LF++MEE+++V+WT+MI GY + G+ +    +F  MPR+++ +W A+I  +  NG  KE+
Sbjct: 289 LFDKMEEKDIVSWTTMIDGYAKVGDYDAARRVFDVMPREDITAWNALISSYQQNGKPKEA 348

Query: 217 LLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLF-----DTVPVRDEISWTS 271
           L +F E++   +     N  +  S +    + G ++    +        + +   I+ TS
Sbjct: 349 LAIFRELQ--LNKNTKPNEVTLASTLAACAQLGAMDLGGWIHVYIKKQGIKLNFHIT-TS 405

Query: 272 MIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPL 331
           +ID Y   G +  A  +F+++  RD   W+AMI+GL  +     A  LF +M+   V P 
Sbjct: 406 LIDMYSKCGHLEKALEVFYSVERRDVFVWSAMIAGLAMHGHGRAAIDLFSKMQETKVKPN 465

Query: 332 NATFSVLFGAAGATANIDLGR 352
             TF+ L  A   +  +D GR
Sbjct: 466 AVTFTNLLCACSHSGLVDEGR 486



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 96/373 (25%), Positives = 166/373 (44%), Gaps = 86/373 (23%)

Query: 16  SSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEM------P 69
           S I  YS  G +D A  +F  + ++++VS+N+M+SGF+Q G   EA +LF+ M      P
Sbjct: 171 SLIHFYSSLGDLDSAYLVFSKIVEKDIVSWNSMISGFVQGGSPEEALQLFKRMKMENARP 230

Query: 70  ER---------------------------------NVVSWTAMICGLADAGRVCEARKLF 96
            R                                 N++   AM+      G + +AR+LF
Sbjct: 231 NRVTMVGVLSACAKRIDLEFGRWACDYIERNGIDINLILSNAMLDMYVKCGSLEDARRLF 290

Query: 97  EEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIV 156
           ++M E+++VSW +M+ G  + G+ + AR+VF+ MP +++ +WNA+I+ Y +     EA+ 
Sbjct: 291 DKMEEKDIVSWTTMIDGYAKVGDYDAARRVFDVMPREDITAWNALISSYQQNGKPKEALA 350

Query: 157 LFEEME-----ERNVVT------------------W-----------------TSMISGY 176
           +F E++     + N VT                  W                 TS+I  Y
Sbjct: 351 IFRELQLNKNTKPNEVTLASTLAACAQLGAMDLGGWIHVYIKKQGIKLNFHITTSLIDMY 410

Query: 177 CRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQ 236
            + G +E+   +F  + R++V  W+AMI G A +G  + ++ LF +M+      N     
Sbjct: 411 SKCGHLEKALEVFYSVERRDVFVWSAMIAGLAMHGHGRAAIDLFSKMQETKVKPNAVTFT 470

Query: 237 S--CNSMINGYIRFGRL--EEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNM 292
           +  C    +G +  GRL   + + ++  VP      +  M+D     G +  A  L   M
Sbjct: 471 NLLCACSHSGLVDEGRLFFNQMRPVYGVVPGSKH--YACMVDILGRAGCLEEAVELIEKM 528

Query: 293 PD-RDAVAWTAMI 304
           P    A  W A++
Sbjct: 529 PIVPSASVWGALL 541



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 74/294 (25%), Positives = 137/294 (46%), Gaps = 16/294 (5%)

Query: 3   ERNHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEAR 62
           ERN     ++   + +  Y K G +++A+ LF  M ++++VS+  M+ G+ + G    AR
Sbjct: 259 ERNGIDINLILSNAMLDMYVKCGSLEDARRLFDKMEEKDIVSWTTMIDGYAKVGDYDAAR 318

Query: 63  RLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEM-----PERNVVSWNSMVVGLIRN 117
           R+F+ MP  ++ +W A+I      G+  EA  +F E+      + N V+  S +    + 
Sbjct: 319 RVFDVMPREDITAWNALISSYQQNGKPKEALAIFRELQLNKNTKPNEVTLASTLAACAQL 378

Query: 118 GELNEA---RKVFNSMPIK-NVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMI 173
           G ++             IK N     ++I  Y +C  + +A+ +F  +E R+V  W++MI
Sbjct: 379 GAMDLGGWIHVYIKKQGIKLNFHITTSLIDMYSKCGHLEKALEVFYSVERRDVFVWSAMI 438

Query: 174 SGYCRAGEVEEGYCLFRRMP----RKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDN 229
           +G    G       LF +M     + N V++T ++   + +G   E  L F +M+ +   
Sbjct: 439 AGLAMHGHGRAAIDLFSKMQETKVKPNAVTFTNLLCACSHSGLVDEGRLFFNQMRPVYGV 498

Query: 230 GNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEIS-WTSMIDGYLSVGQV 282
                  +C  M++   R G LEEA  L + +P+    S W +++      G V
Sbjct: 499 VPGSKHYAC--MVDILGRAGCLEEAVELIEKMPIVPSASVWGALLGACRIYGNV 550


>gi|298204424|emb|CBI16904.3| unnamed protein product [Vitis vinifera]
          Length = 843

 Score =  319 bits (817), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 210/718 (29%), Positives = 336/718 (46%), Gaps = 142/718 (19%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWT 77
           I  Y K   ++ A  +F  MPQR+ VS+NAML G+   G +  A++LF+ MPER+VVSW 
Sbjct: 84  IQMYIKCSDLEFAFKVFDGMPQRDTVSWNAMLFGYAGRGDIGVAQKLFDAMPERDVVSWN 143

Query: 78  AMICGLADAGRVCEARKLFEEMP------------------------------------- 100
           ++I G    G   +   +F +M                                      
Sbjct: 144 SLISGYLHNGDHRKVIDVFLQMGRMGTVFDRTTFAVVLKSCSSLEDHGGGIQIHGLAVKM 203

Query: 101 --ERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLF 158
             + +VV+ ++++    +  +L+ + + F+SMP KN +SW+A+IAG V+   +   + LF
Sbjct: 204 GFDCDVVTGSALLDMYAKCKKLDCSIQFFHSMPEKNWVSWSAIIAGCVQNDDLRGGLELF 263

Query: 159 EEMEE---------------------------------------RNVVTWTSMISGYCRA 179
           +EM++                                        +VV  T+ +  Y + 
Sbjct: 264 KEMQKAGVGVSQSTFASVFRSCAGLSALRLGSQLHGHALKTDFGTDVVIGTATLDMYMKC 323

Query: 180 GEVEEGYCLFRRMPRKNVVSWTAMIGGFAWN----GFHKESL------------------ 217
             + +   LF  +P  N+ S+ A+I G+A +    G  + SL                  
Sbjct: 324 NNLSDAQKLFNSLPNHNLQSYNAIIVGYARSDKGLGLDEVSLSGAFRACAVIKGDLEGLQ 383

Query: 218 LLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWT------- 270
           +  + MK +C +    N+   N++++ Y + G L EA  +F+ +  RD +SW        
Sbjct: 384 VHGLSMKSLCQS----NICVANAILDMYGKCGALVEACLVFEEMVSRDAVSWNAIIAAHE 439

Query: 271 ------------------------------SMIDGYLSVGQVSNAYYLFHNMPDRDAVAW 300
                                         ++ID Y   G +  A  L   + ++  V+W
Sbjct: 440 QNGNEEKTLSLFIHNRIIKSRLGLDSFVGIALIDMYSKCGMMEKAEKLHDRLAEQTVVSW 499

Query: 301 TAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMK 360
            A+ISG    +   EA   F +M   GV P N T++ +         ++LG+QIH  ++K
Sbjct: 500 NAIISGFSLQKQSEEAQKTFSKMLEMGVDPDNFTYATILDTCANLVTVELGKQIHAQIIK 559

Query: 361 TESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKV 420
            E +SD  + + L+ MY+KCG + +   IF    +RD V+WN+MV G++ HGL  E LK+
Sbjct: 560 KELQSDAYISSTLVDMYSKCGNMQDFQLIFEKAPNRDFVTWNAMVCGYAQHGLGEEALKI 619

Query: 421 FESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLG 480
           FE M      PN  TFL +L AC H GLV +G   F++M   Y + P  EHY  +++++G
Sbjct: 620 FEYMQLENVKPNHATFLAVLRACGHMGLVEKGLHYFHSMLSNYGLDPQLEHYSCVVDIMG 679

Query: 481 RAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHV 540
           R+G++ +A E +  +PFE D  IW  LL  C    GN E+AE AA  +L+L+P ++ A+V
Sbjct: 680 RSGQVSKALELIEGMPFEADAVIWRTLLSICKI-HGNVEVAEKAAYSILQLEPEDSAAYV 738

Query: 541 VLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
           +L NIYA +G   E  KLR  M   G++K PGCSW+     +  FL GDK   +  EI
Sbjct: 739 LLSNIYANAGMWNEVTKLRKMMRFNGLKKEPGCSWIEIKSEVHAFLVGDKAHPRSKEI 796



 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 132/530 (24%), Positives = 247/530 (46%), Gaps = 45/530 (8%)

Query: 41  NVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMP 100
            V   N ++  +++   L  A ++F+ MP+R+ VSW AM+ G A  G +  A+KLF+ MP
Sbjct: 76  TVFVTNCLIQMYIKCSDLEFAFKVFDGMPQRDTVSWNAMLFGYAGRGDIGVAQKLFDAMP 135

Query: 101 ERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECC----------- 149
           ER+VVSWNS++ G + NG+  +   VF  M     +      A  ++ C           
Sbjct: 136 ERDVVSWNSLISGYLHNGDHRKVIDVFLQMGRMGTVFDRTTFAVVLKSCSSLEDHGGGIQ 195

Query: 150 MMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAW 209
           + G A+ +  + +   VVT ++++  Y +  +++     F  MP KN VSW+A+I G   
Sbjct: 196 IHGLAVKMGFDCD---VVTGSALLDMYAKCKKLDCSIQFFHSMPEKNWVSWSAIIAGCVQ 252

Query: 210 NGFHKESLLLFIEMK----GICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRD 265
           N   +  L LF EM+    G+  +      +SC  +    +R G       L  T    D
Sbjct: 253 NDDLRGGLELFKEMQKAGVGVSQSTFASVFRSCAGL--SALRLGSQLHGHAL-KTDFGTD 309

Query: 266 EISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRA 325
            +  T+ +D Y+    +S+A  LF+++P+ +  ++ A+I G  +++              
Sbjct: 310 VVIGTATLDMYMKCNNLSDAQKLFNSLPNHNLQSYNAIIVGYARSD-------------- 355

Query: 326 HGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDN 385
            G+     + S  F A         G Q+H + MK+  +S++ + N ++ MY KCG +  
Sbjct: 356 KGLGLDEVSLSGAFRACAVIKGDLEGLQVHGLSMKSLCQSNICVANAILDMYGKCGALVE 415

Query: 386 AYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVF--ESMLESGTHPNSVTFLGILSAC 443
           A  +F  MVSRD VSWN+++     +G   +TL +F    +++S    +S   + ++   
Sbjct: 416 ACLVFEEMVSRDAVSWNAIIAAHEQNGNEEKTLSLFIHNRIIKSRLGLDSFVGIALIDMY 475

Query: 444 SHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRI 503
           S  G++ +  +L + + +   +       +S  +L  ++ + ++    +L +  +PD+  
Sbjct: 476 SKCGMMEKAEKLHDRLAEQTVVSWNA--IISGFSLQKQSEEAQKTFSKMLEMGVDPDNFT 533

Query: 504 WGALLGACG---FCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASG 550
           +  +L  C      E   +I     K+ L+ D   A     L ++Y+  G
Sbjct: 534 YATILDTCANLVTVELGKQIHAQIIKKELQSD---AYISSTLVDMYSKCG 580



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 34/101 (33%), Positives = 53/101 (52%)

Query: 326 HGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDN 385
              P    TFS +F        +  G+Q H  ++ TE +  + + NCLI MY KC  ++ 
Sbjct: 36  QATPTKKKTFSHIFQECSDRKALCPGKQAHARMILTEFKPTVFVTNCLIQMYIKCSDLEF 95

Query: 386 AYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLE 426
           A+ +F  M  RD VSWN+M+ G++  G      K+F++M E
Sbjct: 96  AFKVFDGMPQRDTVSWNAMLFGYAGRGDIGVAQKLFDAMPE 136


>gi|449436619|ref|XP_004136090.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930-like [Cucumis sativus]
          Length = 723

 Score =  319 bits (817), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 186/556 (33%), Positives = 300/556 (53%), Gaps = 18/556 (3%)

Query: 56  GRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNV----VSWNSMV 111
           G    ARRLF+E+PE N+  W  MI G +          L+ EM  R V     ++  + 
Sbjct: 66  GDFQYARRLFDEIPEPNLFIWNTMIRGYSRLDFPQLGVSLYLEMLRRGVKPDRYTFPFLF 125

Query: 112 VGLIRNGELNEARKVFNSMPIKNVISWN-----AMIAGYVECCMMGEAIVLFEEMEERNV 166
            G  R+  L   R++   + +K+ + +N     A++  Y+ C  +  A  +F+   + +V
Sbjct: 126 KGFTRDIALEYGRQLHGHV-LKHGLQYNVFVHTALVQMYLLCGQLDTARGVFDVCPKADV 184

Query: 167 VTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGI 226
           +TW  +IS Y + G+ EE   LF  M  K V+  T  +     +   K  L      K +
Sbjct: 185 ITWNMIISAYNKVGKFEESRRLFLVMEDKQVLPTTVTLV-LVLSACSK--LKDLRTGKKV 241

Query: 227 CDNGNNCNVQSC----NSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQV 282
                NC V+S     N+MI+ Y   G ++ A  +F ++  RD ISWT+++ G+ ++G++
Sbjct: 242 HSYVKNCKVESNLVLENAMIDMYADCGEMDSALGIFRSMNNRDIISWTTIVSGFTNLGEI 301

Query: 283 SNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAA 342
             A   F  MP++D V+WTAMI G +++  F EA  LF  M+A  V P   T   +  A 
Sbjct: 302 DVARNYFDKMPEKDYVSWTAMIDGYIRSNRFKEALELFRNMQATNVKPDEFTMVSVLTAC 361

Query: 343 GATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWN 402
                ++LG  I   + + + ++DL + N LI MY KCG +D A +IF  M  RD  +W 
Sbjct: 362 AHLGALELGEWIRTYIDRNKIKNDLFVRNALIDMYFKCGDVDKAESIFREMSQRDKFTWT 421

Query: 403 SMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDV 462
           +M++G + +G   + L +F +ML++   P+ +T++G+LSAC+H GLV +G + F  M   
Sbjct: 422 AMIVGLAVNGHGEKALDMFSNMLKASILPDEITYIGVLSACTHTGLVDKGRKYFLRMTSQ 481

Query: 463 YKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAE 522
           + I+P   HY  +++LL RAG++KEA E +  +P + +  +WGALL  C      +++AE
Sbjct: 482 HGIEPNIAHYGCLVDLLARAGRLKEAYEVIENMPIKANSIVWGALLAGCRVYR-ESDMAE 540

Query: 523 HAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGI 582
              K++LEL+P N   +V+LCNIYAA  R  +  +LR  M  KG++K PGCS +  NG +
Sbjct: 541 MVVKQILELEPDNGAVYVLLCNIYAACKRWNDLRELRQMMMDKGIKKTPGCSLIEMNGRV 600

Query: 583 QMFLSGDKIPAQVAEI 598
             F++GD+   Q   I
Sbjct: 601 HEFVAGDRSHPQTKNI 616



 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 127/464 (27%), Positives = 216/464 (46%), Gaps = 35/464 (7%)

Query: 39  QRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEE 98
           Q NV  + A++  +L  G+L  AR +F+  P+ +V++W  +I      G+  E+R+LF  
Sbjct: 150 QYNVFVHTALVQMYLLCGQLDTARGVFDVCPKADVITWNMIISAYNKVGKFEESRRLFLV 209

Query: 99  MPERNVVSWNSMVVGLI----RNGELNEARKVF----NSMPIKNVISWNAMIAGYVECCM 150
           M ++ V+     +V ++    +  +L   +KV     N     N++  NAMI  Y +C  
Sbjct: 210 MEDKQVLPTTVTLVLVLSACSKLKDLRTGKKVHSYVKNCKVESNLVLENAMIDMYADCGE 269

Query: 151 MGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWN 210
           M  A+ +F  M  R++++WT+++SG+   GE++     F +MP K+ VSWTAMI G+  +
Sbjct: 270 MDSALGIFRSMNNRDIISWTTIVSGFTNLGEIDVARNYFDKMPEKDYVSWTAMIDGYIRS 329

Query: 211 GFHKESLLLFIEMKGICDNGNNCNVQ----SCNSMINGYIRFGRLEEAQ---NLFDTVPV 263
              KE+L LF  M+         NV+    +  S++      G LE  +      D   +
Sbjct: 330 NRFKEALELFRNMQAT-------NVKPDEFTMVSVLTACAHLGALELGEWIRTYIDRNKI 382

Query: 264 RDEI-SWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFME 322
           ++++    ++ID Y   G V  A  +F  M  RD   WTAMI GL  N    +A  +F  
Sbjct: 383 KNDLFVRNALIDMYFKCGDVDKAESIFREMSQRDKFTWTAMIVGLAVNGHGEKALDMFSN 442

Query: 323 MRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTES-ESDLILENCLISMYAKCG 381
           M    + P   T+  +  A   T  +D GR+    +      E ++    CL+ + A+ G
Sbjct: 443 MLKASILPDEITYIGVLSACTHTGLVDKGRKYFLRMTSQHGIEPNIAHYGCLVDLLARAG 502

Query: 382 VIDNAYNIFSNM-VSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFL--G 438
            +  AY +  NM +  + + W +++ G   +  ++    V + +LE      +V  L   
Sbjct: 503 RLKEAYEVIENMPIKANSIVWGALLAGCRVYRESDMAEMVVKQILELEPDNGAVYVLLCN 562

Query: 439 ILSACSHAGLVSRGWELFNAMFDV-YKIQPGPEHYVSMINLLGR 481
           I +AC     +    EL   M D   K  PG     S+I + GR
Sbjct: 563 IYAACKRWNDLR---ELRQMMMDKGIKKTPG----CSLIEMNGR 599



 Score =  119 bits (298), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 90/379 (23%), Positives = 157/379 (41%), Gaps = 113/379 (29%)

Query: 9   SLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEM 68
           ++ VH T+ +  Y   G +D A+ +F + P+ +V+++N ++S + + G+  E+RRLF  M
Sbjct: 152 NVFVH-TALVQMYLLCGQLDTARGVFDVCPKADVITWNMIISAYNKVGKFEESRRLFLVM 210

Query: 69  PERNVVSWT---------------------------------------AMICGLADAGRV 89
            ++ V+  T                                       AMI   AD G +
Sbjct: 211 EDKQVLPTTVTLVLVLSACSKLKDLRTGKKVHSYVKNCKVESNLVLENAMIDMYADCGEM 270

Query: 90  CEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECC 149
             A  +F  M  R+++SW ++V G    GE++ AR  F+ MP K+ +SW AMI GY+   
Sbjct: 271 DSALGIFRSMNNRDIISWTTIVSGFTNLGEIDVARNYFDKMPEKDYVSWTAMIDGYIRSN 330

Query: 150 MMGEAIVLFEEMEERNV---------------------------------------VTWT 170
              EA+ LF  M+  NV                                           
Sbjct: 331 RFKEALELFRNMQATNVKPDEFTMVSVLTACAHLGALELGEWIRTYIDRNKIKNDLFVRN 390

Query: 171 SMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEM------- 223
           ++I  Y + G+V++   +FR M +++  +WTAMI G A NG  +++L +F  M       
Sbjct: 391 ALIDMYFKCGDVDKAESIFREMSQRDKFTWTAMIVGLAVNGHGEKALDMFSNMLKASILP 450

Query: 224 --------------KGICDNGNNC------------NVQSCNSMINGYIRFGRLEEAQNL 257
                          G+ D G               N+     +++   R GRL+EA  +
Sbjct: 451 DEITYIGVLSACTHTGLVDKGRKYFLRMTSQHGIEPNIAHYGCLVDLLARAGRLKEAYEV 510

Query: 258 FDTVPVR-DEISWTSMIDG 275
            + +P++ + I W +++ G
Sbjct: 511 IENMPIKANSIVWGALLAG 529



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 54/187 (28%), Positives = 91/187 (48%), Gaps = 13/187 (6%)

Query: 3   ERNHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEAR 62
           +RN  K+ +    + I  Y K G +D+A+++F+ M QR+  ++ AM+ G   NG   +A 
Sbjct: 378 DRNKIKNDLFVRNALIDMYFKCGDVDKAESIFREMSQRDKFTWTAMIVGLAVNGHGEKAL 437

Query: 63  RLFEEMPERNV----VSWTAMICGLADAGRVCEARKLFEEMP-----ERNVVSWNSMVVG 113
            +F  M + ++    +++  ++      G V + RK F  M      E N+  +  +V  
Sbjct: 438 DMFSNMLKASILPDEITYIGVLSACTHTGLVDKGRKYFLRMTSQHGIEPNIAHYGCLVDL 497

Query: 114 LIRNGELNEARKVFNSMPIK-NVISWNAMIAG---YVECCMMGEAIVLFEEMEERNVVTW 169
           L R G L EA +V  +MPIK N I W A++AG   Y E  M    +    E+E  N   +
Sbjct: 498 LARAGRLKEAYEVIENMPIKANSIVWGALLAGCRVYRESDMAEMVVKQILELEPDNGAVY 557

Query: 170 TSMISGY 176
             + + Y
Sbjct: 558 VLLCNIY 564


>gi|302764988|ref|XP_002965915.1| hypothetical protein SELMODRAFT_167728 [Selaginella moellendorffii]
 gi|300166729|gb|EFJ33335.1| hypothetical protein SELMODRAFT_167728 [Selaginella moellendorffii]
          Length = 912

 Score =  319 bits (817), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 181/595 (30%), Positives = 318/595 (53%), Gaps = 19/595 (3%)

Query: 7   PKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFE 66
           P+  +V  T  I   + +  +  A  +F  MP RN VSY+ M+  ++  G++ EA  L  
Sbjct: 229 PQQDIVSCTLMIKACAVQEILGHAVEIFAAMPDRNAVSYSFMIQIYIDQGKIGEAENLSR 288

Query: 67  EMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERN-VVSWNSMVVGLIRNGELNEARK 125
            MP+++   WT+M+   +  G V EAR++F+    R+  VSWN+++    + G L+ AR 
Sbjct: 289 RMPQQDPTLWTSMLSAYSRHGLVEEARRIFDRAARRDDEVSWNALLSAYAQAGHLHLARS 348

Query: 126 VFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEG 185
            F  MP  +V++W A+IA   +   + EA VL++ + ER++V WT++I  Y   G++ E 
Sbjct: 349 TFERMPRHDVVAWTALIAVSGQNGQLEEAEVLYDLIPERDLVAWTALIQAYGVNGKLTES 408

Query: 186 YCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGY 245
             ++  MP +N VS TAMI  ++ NG         ++ + + D   + +  +  SMI  Y
Sbjct: 409 KRVYALMPERNRVSHTAMIIAYSQNG-------EVVQARKMLDTLPDPDQSTRTSMIVAY 461

Query: 246 IRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMIS 305
            + G +++A+ +FD++   D I+  +M++ Y S   + +A  +F ++  +  V+W  M++
Sbjct: 462 AQNGYIKDAREMFDSIKNPDVIACNAMMEAYSSAQMLDHAKAMFDSIKQKTLVSWNTMVA 521

Query: 306 GLVQNELFVEATYLFMEMRAHGVPPLNA-TFSVLFGAAGATANIDLGRQIHCVLMKTESE 364
              Q     EA  +F       +P  N  + +V+  A     ++   R+I   +     E
Sbjct: 522 AYAQAGNLDEAKSIF-----DSIPHKNVVSHNVMIVAYAHNMDLAEARRIFYSM----DE 572

Query: 365 SDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESM 424
            D +    +++M A+ G +  A  +F+ M  R++VSWNS++ G +  G     ++    M
Sbjct: 573 KDTVTWTAMVAMVAQHGRLAEAQELFAKMPYRNVVSWNSLIAGMASCGHGMAAVRYLYVM 632

Query: 425 LESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGK 484
              G  P+ +TF+GIL ACSH GLV  GW  F +M   + + P  EHY  M+++LGRAG+
Sbjct: 633 RNEGAKPDHITFMGILIACSHVGLVEEGWTHFTSMQGDHGLIPWREHYCRMVDVLGRAGQ 692

Query: 485 IKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCN 544
           +  A E +  +PF PD   WG+LLG+C     + ++   AA+ LL+ D  ++  +V+L N
Sbjct: 693 LGAARELLETMPFIPDVGAWGSLLGSCK-THSDVKLGTRAAESLLQFDDQSSGPYVLLAN 751

Query: 545 IYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEIL 599
           +Y++ GR  +   +R  M  +GV+K PG S +  +G +  F++G+    +  EIL
Sbjct: 752 MYSSVGRVADALAVRNRMKARGVKKQPGVSLIRVDGVLHRFVAGEASHPRHQEIL 806



 Score =  239 bits (610), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 141/533 (26%), Positives = 275/533 (51%), Gaps = 43/533 (8%)

Query: 7   PKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFE 66
           P   VV   S I  +S+ GF+  A  +F  MP+ +  S+N+M++G+ Q+G L+ A  +F+
Sbjct: 105 PSHNVVSWNSLIAGFSQHGFMSNADEIFARMPRWSSSSWNSMITGYAQSGDLASATAMFD 164

Query: 67  EMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKV 126
             PE NV+SW A+I G +D   + EA+ +F+  P R+ +SWN+M+    ++G+L+ A++V
Sbjct: 165 RTPEHNVISWNALITGYSDNRMIPEAKGVFDRAPGRDKISWNAMLTAYAQSGDLDSAKEV 224

Query: 127 FNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGY 186
           F+  P ++++S   MI       ++G A+ +F  M +RN V+++ MI  Y   G++ E  
Sbjct: 225 FDRTPQQDIVSCTLMIKACAVQEILGHAVEIFAAMPDRNAVSYSFMIQIYIDQGKIGEAE 284

Query: 187 CLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIE-------------MKGICDNGN-- 231
            L RRMP+++   WT+M+  ++ +G  +E+  +F               +      G+  
Sbjct: 285 NLSRRMPQQDPTLWTSMLSAYSRHGLVEEARRIFDRAARRDDEVSWNALLSAYAQAGHLH 344

Query: 232 ----------NCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQ 281
                       +V +  ++I    + G+LEEA+ L+D +P RD ++WT++I  Y   G+
Sbjct: 345 LARSTFERMPRHDVVAWTALIAVSGQNGQLEEAEVLYDLIPERDLVAWTALIQAYGVNGK 404

Query: 282 VSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGA 341
           ++ +  ++  MP+R+ V+ TAMI    QN   V+A  +   +      P  +T + +  A
Sbjct: 405 LTESKRVYALMPERNRVSHTAMIIAYSQNGEVVQARKMLDTL----PDPDQSTRTSMIVA 460

Query: 342 AGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSW 401
                 I   R+    +  +    D+I  N ++  Y+   ++D+A  +F ++  + LVSW
Sbjct: 461 YAQNGYIKDARE----MFDSIKNPDVIACNAMMEAYSSAQMLDHAKAMFDSIKQKTLVSW 516

Query: 402 NSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFD 461
           N+MV  ++  G  +E   +F+S+     H N V+   ++ A +H   ++    +F +M +
Sbjct: 517 NTMVAAYAQAGNLDEAKSIFDSI----PHKNVVSHNVMIVAYAHNMDLAEARRIFYSMDE 572

Query: 462 VYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFC 514
              +      + +M+ ++ + G++ EA+E   ++P+  +   W +L+     C
Sbjct: 573 KDTVT-----WTAMVAMVAQHGRLAEAQELFAKMPYR-NVVSWNSLIAGMASC 619



 Score =  192 bits (487), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 118/451 (26%), Positives = 219/451 (48%), Gaps = 23/451 (5%)

Query: 41  NVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMP 100
           N+   N ++  + +  R+ +A+ +F E+PE NV S   ++   ++ G +  A+ +F+++P
Sbjct: 46  NLFLQNLIIQMYGKCSRIDDAQAVFNELPEPNVFSRCILMQAYSENGDLGSAKAIFDQIP 105

Query: 101 ERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEE 160
             NVVSWNS++ G  ++G ++ A ++F  MP  +  SWN+MI GY +   +  A  +F+ 
Sbjct: 106 SHNVVSWNSLIAGFSQHGFMSNADEIFARMPRWSSSSWNSMITGYAQSGDLASATAMFDR 165

Query: 161 MEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLF 220
             E NV++W ++I+GY     + E   +F R P ++ +SW AM+  +A +G    +    
Sbjct: 166 TPEHNVISWNALITGYSDNRMIPEAKGVFDRAPGRDKISWNAMLTAYAQSGDLDSA---- 221

Query: 221 IEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVG 280
              K + D     ++ SC  MI        L  A  +F  +P R+ +S++ MI  Y+  G
Sbjct: 222 ---KEVFDRTPQQDIVSCTLMIKACAVQEILGHAVEIFAAMPDRNAVSYSFMIQIYIDQG 278

Query: 281 QVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFG 340
           ++  A  L   MP +D   WT+M+S   ++ L  EA  +F             +++ L  
Sbjct: 279 KIGEAENLSRRMPQQDPTLWTSMLSAYSRHGLVEEARRIFDRAARRDD---EVSWNALLS 335

Query: 341 AAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVS 400
           A     ++ L R       +     D++    LI++  + G ++ A  ++  +  RDLV+
Sbjct: 336 AYAQAGHLHLARST----FERMPRHDVVAWTALIAVSGQNGQLEEAEVLYDLIPERDLVA 391

Query: 401 WNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMF 460
           W +++  +  +G   E+ +V+  M E     N V+   ++ A S  G V +  ++ + + 
Sbjct: 392 WTALIQAYGVNGKLTESKRVYALMPER----NRVSHTAMIIAYSQNGEVVQARKMLDTLP 447

Query: 461 DVYKIQPGPEHYVSMINLLGRAGKIKEAEEF 491
           D     P      SMI    + G IK+A E 
Sbjct: 448 D-----PDQSTRTSMIVAYAQNGYIKDAREM 473



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 76/305 (24%), Positives = 136/305 (44%), Gaps = 21/305 (6%)

Query: 226 ICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNA 285
           I D  +  N+   N +I  Y +  R+++AQ +F+ +P  +  S   ++  Y   G + +A
Sbjct: 38  IADGEHRGNLFLQNLIIQMYGKCSRIDDAQAVFNELPEPNVFSRCILMQAYSENGDLGSA 97

Query: 286 YYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGAT 345
             +F  +P  + V+W ++I+G  Q+     A  +F  M        N+  +      G  
Sbjct: 98  KAIFDQIPSHNVVSWNSLIAGFSQHGFMSNADEIFARMPRWSSSSWNSMIT------GYA 151

Query: 346 ANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMV 405
            + DL       +     E ++I  N LI+ Y+   +I  A  +F     RD +SWN+M+
Sbjct: 152 QSGDLASA--TAMFDRTPEHNVISWNALITGYSDNRMIPEAKGVFDRAPGRDKISWNAML 209

Query: 406 MGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKI 465
             ++  G  +   +VF+   +     + V+   ++ AC+   ++    E+F AM D   +
Sbjct: 210 TAYAQSGDLDSAKEVFDRTPQQ----DIVSCTLMIKACAVQEILGHAVEIFAAMPDRNAV 265

Query: 466 QPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGAC---GFCEGNAEIAE 522
                 Y  MI +    GKI EAE    R+P + D  +W ++L A    G  E    I +
Sbjct: 266 S-----YSFMIQIYIDQGKIGEAENLSRRMP-QQDPTLWTSMLSAYSRHGLVEEARRIFD 319

Query: 523 HAAKR 527
            AA+R
Sbjct: 320 RAARR 324



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 65/269 (24%), Positives = 107/269 (39%), Gaps = 50/269 (18%)

Query: 321 MEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKC 380
           M +    V  L    +    + G   ++  GR+IH  +   E   +L L+N +I MY KC
Sbjct: 1   MSLLKTQVRELQNALATAIRSCGIAKDLAQGRKIHNQIADGEHRGNLFLQNLIIQMYGKC 60

Query: 381 GVIDNA---YN----------------------------IFSNMVSRDLVSWNSMVMGFS 409
             ID+A   +N                            IF  + S ++VSWNS++ GFS
Sbjct: 61  SRIDDAQAVFNELPEPNVFSRCILMQAYSENGDLGSAKAIFDQIPSHNVVSWNSLIAGFS 120

Query: 410 HHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGP 469
            HG  +   ++F  M       +S ++  +++  + +G ++       AMFD       P
Sbjct: 121 QHGFMSNADEIFARM----PRWSSSSWNSMITGYAQSGDLASA----TAMFD-----RTP 167

Query: 470 EHYV----SMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAA 525
           EH V    ++I        I EA+    R P   D   W A+L A     G+ + A+   
Sbjct: 168 EHNVISWNALITGYSDNRMIPEAKGVFDRAPGR-DKISWNAMLTAYA-QSGDLDSAKEVF 225

Query: 526 KRLLELDPLNAPAHVVLCNIYAASGRHVE 554
            R  + D ++    +  C +    G  VE
Sbjct: 226 DRTPQQDIVSCTLMIKACAVQEILGHAVE 254


>gi|449491161|ref|XP_004158817.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g15930-like [Cucumis
           sativus]
          Length = 744

 Score =  318 bits (816), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 186/556 (33%), Positives = 300/556 (53%), Gaps = 18/556 (3%)

Query: 56  GRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNV----VSWNSMV 111
           G    ARRLF+E+PE N+  W  MI G +          L+ EM  R V     ++  + 
Sbjct: 87  GDFQYARRLFDEIPEPNLFIWNTMIRGYSRLDFPQLGVSLYLEMLRRGVKPDRYTFPFLF 146

Query: 112 VGLIRNGELNEARKVFNSMPIKNVISWN-----AMIAGYVECCMMGEAIVLFEEMEERNV 166
            G  R+  L   R++   + +K+ + +N     A++  Y+ C  +  A  +F+   + +V
Sbjct: 147 KGFTRDIALEYGRQLHGHV-LKHGLQYNVFVHTALVQMYLLCGQLDTARGVFDVCPKADV 205

Query: 167 VTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGI 226
           +TW  +IS Y + G+ EE   LF  M  K V+  T  +     +   K  L      K +
Sbjct: 206 ITWNMIISAYNKVGKFEESRRLFLVMEDKQVLPTTVTLV-LVLSACSK--LKDLRTGKKV 262

Query: 227 CDNGNNCNVQSC----NSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQV 282
                NC V+S     N+MI+ Y   G ++ A  +F ++  RD ISWT+++ G+ ++G++
Sbjct: 263 HSYVKNCKVESNLVLENAMIDMYADCGEMDSALGIFRSMNNRDIISWTTIVSGFTNLGEI 322

Query: 283 SNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAA 342
             A   F  MP++D V+WTAMI G +++  F EA  LF  M+A  V P   T   +  A 
Sbjct: 323 DVARNYFDKMPEKDYVSWTAMIDGYIRSNRFKEALELFRNMQATNVKPDEFTMVSVLTAC 382

Query: 343 GATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWN 402
                ++LG  I   + + + ++DL + N LI MY KCG +D A +IF  M  RD  +W 
Sbjct: 383 AHLGALELGEWIRTYIDRNKIKNDLFVRNALIDMYFKCGDVDKAESIFREMSQRDKFTWT 442

Query: 403 SMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDV 462
           +M++G + +G   + L +F +ML++   P+ +T++G+LSAC+H GLV +G + F  M   
Sbjct: 443 AMIVGLAVNGHGEKALDMFSNMLKASILPDEITYIGVLSACTHTGLVDKGRKYFLRMTSQ 502

Query: 463 YKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAE 522
           + I+P   HY  +++LL RAG++KEA E +  +P + +  +WGALL  C      +++AE
Sbjct: 503 HGIEPNIAHYGCLVDLLARAGRLKEAYEVIENMPIKANSIVWGALLAGCRVYR-ESDMAE 561

Query: 523 HAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGI 582
              K++LEL+P N   +V+LCNIYAA  R  +  +LR  M  KG++K PGCS +  NG +
Sbjct: 562 MVVKQILELEPDNGAVYVLLCNIYAACKRWNDLRELRQMMMDKGIKKXPGCSLIEMNGRV 621

Query: 583 QMFLSGDKIPAQVAEI 598
             F++GD+   Q   I
Sbjct: 622 HEFVAGDRSHPQTKNI 637



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 114/422 (27%), Positives = 200/422 (47%), Gaps = 19/422 (4%)

Query: 39  QRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEE 98
           Q NV  + A++  +L  G+L  AR +F+  P+ +V++W  +I      G+  E+R+LF  
Sbjct: 171 QYNVFVHTALVQMYLLCGQLDTARGVFDVCPKADVITWNMIISAYNKVGKFEESRRLFLV 230

Query: 99  MPERNVVSWNSMVVGLI----RNGELNEARKVF----NSMPIKNVISWNAMIAGYVECCM 150
           M ++ V+     +V ++    +  +L   +KV     N     N++  NAMI  Y +C  
Sbjct: 231 MEDKQVLPTTVTLVLVLSACSKLKDLRTGKKVHSYVKNCKVESNLVLENAMIDMYADCGE 290

Query: 151 MGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWN 210
           M  A+ +F  M  R++++WT+++SG+   GE++     F +MP K+ VSWTAMI G+  +
Sbjct: 291 MDSALGIFRSMNNRDIISWTTIVSGFTNLGEIDVARNYFDKMPEKDYVSWTAMIDGYIRS 350

Query: 211 GFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQ---NLFDTVPVRDEI 267
              KE+L LF  M+      +   +    S++      G LE  +      D   +++++
Sbjct: 351 NRFKEALELFRNMQATNVKPDEFTMV---SVLTACAHLGALELGEWIRTYIDRNKIKNDL 407

Query: 268 -SWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAH 326
               ++ID Y   G V  A  +F  M  RD   WTAMI GL  N    +A  +F  M   
Sbjct: 408 FVRNALIDMYFKCGDVDKAESIFREMSQRDKFTWTAMIVGLAVNGHGEKALDMFSNMLKA 467

Query: 327 GVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTES-ESDLILENCLISMYAKCGVIDN 385
            + P   T+  +  A   T  +D GR+    +      E ++    CL+ + A+ G +  
Sbjct: 468 SILPDEITYIGVLSACTHTGLVDKGRKYFLRMTSQHGIEPNIAHYGCLVDLLARAGRLKE 527

Query: 386 AYNIFSNM-VSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFL--GILSA 442
           AY +  NM +  + + W +++ G   +  ++    V + +LE      +V  L   I +A
Sbjct: 528 AYEVIENMPIKANSIVWGALLAGCRVYRESDMAEMVVKQILELEPDNGAVYVLLCNIYAA 587

Query: 443 CS 444
           C 
Sbjct: 588 CK 589



 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 90/379 (23%), Positives = 157/379 (41%), Gaps = 113/379 (29%)

Query: 9   SLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEM 68
           ++ VH T+ +  Y   G +D A+ +F + P+ +V+++N ++S + + G+  E+RRLF  M
Sbjct: 173 NVFVH-TALVQMYLLCGQLDTARGVFDVCPKADVITWNMIISAYNKVGKFEESRRLFLVM 231

Query: 69  PERNVVSWT---------------------------------------AMICGLADAGRV 89
            ++ V+  T                                       AMI   AD G +
Sbjct: 232 EDKQVLPTTVTLVLVLSACSKLKDLRTGKKVHSYVKNCKVESNLVLENAMIDMYADCGEM 291

Query: 90  CEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECC 149
             A  +F  M  R+++SW ++V G    GE++ AR  F+ MP K+ +SW AMI GY+   
Sbjct: 292 DSALGIFRSMNNRDIISWTTIVSGFTNLGEIDVARNYFDKMPEKDYVSWTAMIDGYIRSN 351

Query: 150 MMGEAIVLFEEMEERNV---------------------------------------VTWT 170
              EA+ LF  M+  NV                                           
Sbjct: 352 RFKEALELFRNMQATNVKPDEFTMVSVLTACAHLGALELGEWIRTYIDRNKIKNDLFVRN 411

Query: 171 SMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEM------- 223
           ++I  Y + G+V++   +FR M +++  +WTAMI G A NG  +++L +F  M       
Sbjct: 412 ALIDMYFKCGDVDKAESIFREMSQRDKFTWTAMIVGLAVNGHGEKALDMFSNMLKASILP 471

Query: 224 --------------KGICDNGNNC------------NVQSCNSMINGYIRFGRLEEAQNL 257
                          G+ D G               N+     +++   R GRL+EA  +
Sbjct: 472 DEITYIGVLSACTHTGLVDKGRKYFLRMTSQHGIEPNIAHYGCLVDLLARAGRLKEAYEV 531

Query: 258 FDTVPVR-DEISWTSMIDG 275
            + +P++ + I W +++ G
Sbjct: 532 IENMPIKANSIVWGALLAG 550



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 54/187 (28%), Positives = 91/187 (48%), Gaps = 13/187 (6%)

Query: 3   ERNHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEAR 62
           +RN  K+ +    + I  Y K G +D+A+++F+ M QR+  ++ AM+ G   NG   +A 
Sbjct: 399 DRNKIKNDLFVRNALIDMYFKCGDVDKAESIFREMSQRDKFTWTAMIVGLAVNGHGEKAL 458

Query: 63  RLFEEMPERNV----VSWTAMICGLADAGRVCEARKLFEEMP-----ERNVVSWNSMVVG 113
            +F  M + ++    +++  ++      G V + RK F  M      E N+  +  +V  
Sbjct: 459 DMFSNMLKASILPDEITYIGVLSACTHTGLVDKGRKYFLRMTSQHGIEPNIAHYGCLVDL 518

Query: 114 LIRNGELNEARKVFNSMPIK-NVISWNAMIAG---YVECCMMGEAIVLFEEMEERNVVTW 169
           L R G L EA +V  +MPIK N I W A++AG   Y E  M    +    E+E  N   +
Sbjct: 519 LARAGRLKEAYEVIENMPIKANSIVWGALLAGCRVYRESDMAEMVVKQILELEPDNGAVY 578

Query: 170 TSMISGY 176
             + + Y
Sbjct: 579 VLLCNIY 585


>gi|357497455|ref|XP_003619016.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494031|gb|AES75234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 999

 Score =  318 bits (815), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 191/608 (31%), Positives = 314/608 (51%), Gaps = 51/608 (8%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEM----PERNV 73
           +T YS+ G +  A+ +F  M QR+ VSYN+++SG  Q G ++ A  LF++M     + + 
Sbjct: 293 VTLYSRSGNLSSAEQIFHCMSQRDRVSYNSLISGLAQQGYINRALALFKKMNLDCQKPDC 352

Query: 74  VSWTAMICGLADAGRVCEARKLFEEMPE----RNVVSWNSMVVGLIRNGE---------- 119
           V+  +++   A  G +   ++      +     ++V   S++   ++  +          
Sbjct: 353 VTVASLLSACASVGALPNGKQFHSYAIKAGMTSDIVVEGSLLDLYVKCSDIKTAHEFFLC 412

Query: 120 ------LNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEER--------N 165
                 LN++ ++F  M I+ ++         ++ C    A  L E++  +        N
Sbjct: 413 YGQLDNLNKSFQIFTQMQIEGIVPNQFTYPSILKTCTTLGATDLGEQIHTQVLKTGFQFN 472

Query: 166 VVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKG 225
           V   + +I  Y + G+++    +FRR+   +VVSWTAMI G+  +    E+L LF EM+ 
Sbjct: 473 VYVSSVLIDMYAKHGKLDHALKIFRRLKENDVVSWTAMIAGYTQHDKFTEALNLFKEMQD 532

Query: 226 ICDNGNNCNVQSCNSMINGY--IRFGRLEEAQNLFDTVPVRDEISW-TSMIDGYLSVGQV 282
                +N    S  S   G   +  GR   AQ+        D++S   +++  Y   G+V
Sbjct: 533 QGIKSDNIGFASAISACAGIQALDQGRQIHAQSCLSGYS--DDLSIGNALVSLYARCGKV 590

Query: 283 SNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAA 342
             AY  F  +  +D V+W +++SG  Q+  F EA  +F +M   G+   + TF     AA
Sbjct: 591 REAYAAFDQIYAKDNVSWNSLVSGFAQSGYFEEALNIFAQMNKAGLEINSFTFGSAVSAA 650

Query: 343 GATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWN 402
              AN+ +G+QIH ++ KT  +S+  + N LI++YAKCG ID+             +SWN
Sbjct: 651 ANIANVRIGKQIHGMIRKTGYDSETEVSNALITLYAKCGTIDD-------------ISWN 697

Query: 403 SMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDV 462
           SM+ G+S HG   E LK+FE M +    PN VTF+G+LSACSH GLV  G   F +M + 
Sbjct: 698 SMITGYSQHGCGFEALKLFEDMKQLDVLPNHVTFVGVLSACSHVGLVDEGISYFRSMSEA 757

Query: 463 YKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAE 522
           + + P PEHY  +++LLGR+G +  A+ FV  +P +PD  +W  LL AC     N +I E
Sbjct: 758 HNLVPKPEHYACVVDLLGRSGLLSRAKRFVEEMPIQPDAMVWRTLLSACN-VHKNIDIGE 816

Query: 523 HAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGI 582
            AA  LLEL+P ++  +V++ N+YA SG+     + R  M  +GV+K PG SW+  +  +
Sbjct: 817 FAASHLLELEPKDSATYVLVSNMYAVSGKWDCRDRTRQMMKDRGVKKEPGRSWVEVDNSV 876

Query: 583 QMFLSGDK 590
             F +GD+
Sbjct: 877 HAFFAGDQ 884



 Score =  145 bits (366), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 123/508 (24%), Positives = 218/508 (42%), Gaps = 90/508 (17%)

Query: 92  ARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMM 151
           A  +F+EMP R++  WN +    I    +     +F  M  KNV     + A  +  C  
Sbjct: 116 AVNVFDEMPIRSLSCWNRIFNTFIAERLMGRVPGLFRRMLTKNVEFDERIFAVVLRGC-S 174

Query: 152 GEAIVLFEEMEERNVVTWTS-----------MISGYCRAGEVEEGYCLFRRMPRKNVVSW 200
           G A V F  +E+ +  T TS           +I  Y + G +     +F  +  ++ VSW
Sbjct: 175 GNA-VSFRFVEQIHAKTITSGFESSTFICNPLIDLYFKNGFLSSAKKVFENLKARDSVSW 233

Query: 201 TAMIGGFAWNGFHKESLLLFI-----------------EMKG-ICDNGNNCNVQSCNSMI 242
            AMI G + NG+ +E++LLF                  ++ G +   G +     CN+++
Sbjct: 234 VAMISGLSQNGYEEEAMLLFCQIVLSACTKVEFFEFGKQLHGLVLKQGFSSETYVCNALV 293

Query: 243 NGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNM------PDRD 296
             Y R G L  A+ +F  +  RD +S+ S+I G    G ++ A  LF  M      PD  
Sbjct: 294 TLYSRSGNLSSAEQIFHCMSQRDRVSYNSLISGLAQQGYINRALALFKKMNLDCQKPDCV 353

Query: 297 AVAWT-------------------AMISGLVQN--------ELFVEAT------------ 317
            VA                     A+ +G+  +        +L+V+ +            
Sbjct: 354 TVASLLSACASVGALPNGKQFHSYAIKAGMTSDIVVEGSLLDLYVKCSDIKTAHEFFLCY 413

Query: 318 ----------YLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDL 367
                      +F +M+  G+ P   T+  +          DLG QIH  ++KT  + ++
Sbjct: 414 GQLDNLNKSFQIFTQMQIEGIVPNQFTYPSILKTCTTLGATDLGEQIHTQVLKTGFQFNV 473

Query: 368 ILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLES 427
            + + LI MYAK G +D+A  IF  +   D+VSW +M+ G++ H    E L +F+ M + 
Sbjct: 474 YVSSVLIDMYAKHGKLDHALKIFRRLKENDVVSWTAMIAGYTQHDKFTEALNLFKEMQDQ 533

Query: 428 GTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKE 487
           G   +++ F   +SAC+    + +G ++ +A   +           ++++L  R GK++E
Sbjct: 534 GIKSDNIGFASAISACAGIQALDQGRQI-HAQSCLSGYSDDLSIGNALVSLYARCGKVRE 592

Query: 488 AEEFVLRLPFEPDHRIWGALLGACGFCE 515
           A     ++ +  D+  W +L+   GF +
Sbjct: 593 AYAAFDQI-YAKDNVSWNSLVS--GFAQ 617



 Score = 81.6 bits (200), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 61/222 (27%), Positives = 97/222 (43%), Gaps = 20/222 (9%)

Query: 272 MIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPL 331
           +ID YL+ G ++ A  +F  MP R    W  + +  +   L      LF  M    V   
Sbjct: 103 LIDFYLAFGDLNCAVNVFDEMPIRSLSCWNRIFNTFIAERLMGRVPGLFRRMLTKNVEFD 162

Query: 332 NATFSVLF-GAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIF 390
              F+V+  G +G   +     QIH   + +  ES   + N LI +Y K G + +A  +F
Sbjct: 163 ERIFAVVLRGCSGNAVSFRFVEQIHAKTITSGFESSTFICNPLIDLYFKNGFLSSAKKVF 222

Query: 391 SNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVS 450
            N+ +RD VSW +M+ G S +G   E + +F  +              +LSAC+      
Sbjct: 223 ENLKARDSVSWVAMISGLSQNGYEEEAMLLFCQI--------------VLSACTKVEFFE 268

Query: 451 RGWELFNAMFDVYKIQPGPEHYV--SMINLLGRAGKIKEAEE 490
            G +L      V K     E YV  +++ L  R+G +  AE+
Sbjct: 269 FGKQLHGL---VLKQGFSSETYVCNALVTLYSRSGNLSSAEQ 307


>gi|302820136|ref|XP_002991736.1| hypothetical protein SELMODRAFT_40989 [Selaginella moellendorffii]
 gi|300140417|gb|EFJ07140.1| hypothetical protein SELMODRAFT_40989 [Selaginella moellendorffii]
          Length = 589

 Score =  318 bits (815), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 187/586 (31%), Positives = 298/586 (50%), Gaps = 33/586 (5%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWT 77
           I  Y+  G ++EA  +F  MP RNVVS+N M+S   Q G  S A+     +P+ ++V+W 
Sbjct: 5   IASYASAGLLEEAWKIFHAMPGRNVVSWNTMVSANAQEGDFSRAKIFLARIPQHSLVAWN 64

Query: 78  AMICGLADAGRVCEARKLFEEMPERNVVSWNSMV-VGLIRNGELNEARKVFNSMPIKNVI 136
           AMI G A  GR  EA++LF+    R+VV WN+++       G + +   +F+ +P  +VI
Sbjct: 65  AMIGGFAREGRFLEAKRLFDAAKVRDVVIWNALIHAKAAVTGGIEDVESLFSRIPCWDVI 124

Query: 137 SWNAMIAGYVECCMMGEAIVLFE-EMEERNVVTWTSMISGYCRAGEVE--EGYCLFRRMP 193
           SWN M+A Y +   +  A   F+  M +R+V +W +M + + R        G   F RMP
Sbjct: 125 SWNEMLAAYTKHGSLNRAKAFFDTRMLQRDVFSWNTMAAAFARMVHQSGAAGKKFFERMP 184

Query: 194 RKNVVSWTAMIGGFAWNGFHKESLLLFIEMKG------------ICDNGNNCNVQSC--- 238
           + N VSW ++  G + NG   ++  LF  M                 NG+    Q     
Sbjct: 185 QHNTVSWNSIAQGLSENGLFDDAKSLFESMGDRDSVSMIQMAVTYARNGHPEQAQELFSR 244

Query: 239 ---------NSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLF 289
                    N+++  Y R G L E    F  +P+ + I+ T +I+ Y   G + +A  +F
Sbjct: 245 ISPRTVAVWNALLWSYARNGHLSETLATFHRIPMMNRITCTVIIEMYGECGSLIDARKVF 304

Query: 290 HNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHG--VPPLNATFSVLFGAAGATAN 347
              PD +  +W  M++    N    EA  L   M+  G  V P   T+ +L  A      
Sbjct: 305 DRTPDPNIFSWNIMLAAYAHNGHSNEALVLSQRMKDSGATVVPDRVTYVILLHACSNLGA 364

Query: 348 IDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMG 407
           +  GR IH  ++ +  ES++++   +++MY KCG + +A  +F  M ++D++ WNSM+  
Sbjct: 365 LREGRMIHASVIASGMESNVVVATAIVNMYGKCGSMGDAKMVFDKMPAKDVICWNSMISA 424

Query: 408 FSHHGLANETLKVFESMLES--GTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKI 465
           ++ +GL    L ++  M  S  G  PN +TF+ +LS+CS A  +      F  M     I
Sbjct: 425 YALNGLGKSALDLYARMRHSCRGLKPNRITFVSLLSSCSAANSLREAVFYFQIMIHDCDI 484

Query: 466 QPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAA 525
           QPG EHY  +I+LLGR+GK+ EAEE +  +PF P    W +LL AC       E+   AA
Sbjct: 485 QPGAEHYHFLIDLLGRSGKVAEAEELINSMPFAPGCGAWMSLLAACER-HSKVELGRRAA 543

Query: 526 KRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVP 571
            R+ E++P NA A+++L  IY A+G   E  +L+  M  +G+++ P
Sbjct: 544 DRVFEMEPKNALAYLMLGKIYVAAGMWDELLQLKKLMEDRGLKREP 589



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 104/352 (29%), Positives = 173/352 (49%), Gaps = 20/352 (5%)

Query: 11  VVHLTSSITKYSKRGFIDEAKALFQL-MPQRNVVSYNAMLSGFLQNGRLSEA--RRLFEE 67
           V+     +  Y+K G ++ AKA F   M QR+V S+N M + F +    S A  ++ FE 
Sbjct: 123 VISWNEMLAAYTKHGSLNRAKAFFDTRMLQRDVFSWNTMAAAFARMVHQSGAAGKKFFER 182

Query: 68  MPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVF 127
           MP+ N VSW ++  GL++ G   +A+ LFE M +R+ VS   M V   RNG   +A+++F
Sbjct: 183 MPQHNTVSWNSIAQGLSENGLFDDAKSLFESMGDRDSVSMIQMAVTYARNGHPEQAQELF 242

Query: 128 NSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYC 187
           + +  + V  WNA++  Y     + E +  F  +   N +T T +I  Y   G + +   
Sbjct: 243 SRISPRTVAVWNALLWSYARNGHLSETLATFHRIPMMNRITCTVIIEMYGECGSLIDARK 302

Query: 188 LFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCN---------VQSC 238
           +F R P  N+ SW  M+  +A NG   E+L+L   MK   D+G             + +C
Sbjct: 303 VFDRTPDPNIFSWNIMLAAYAHNGHSNEALVLSQRMK---DSGATVVPDRVTYVILLHAC 359

Query: 239 NSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAV 298
           +++  G +R GR+  A  +   +     ++ T++++ Y   G + +A  +F  MP +D +
Sbjct: 360 SNL--GALREGRMIHASVIASGMESNVVVA-TAIVNMYGKCGSMGDAKMVFDKMPAKDVI 416

Query: 299 AWTAMISGLVQNELFVEATYLFMEMR--AHGVPPLNATFSVLFGAAGATANI 348
            W +MIS    N L   A  L+  MR    G+ P   TF  L  +  A  ++
Sbjct: 417 CWNSMISAYALNGLGKSALDLYARMRHSCRGLKPNRITFVSLLSSCSAANSL 468


>gi|147806113|emb|CAN65480.1| hypothetical protein VITISV_030746 [Vitis vinifera]
          Length = 686

 Score =  318 bits (814), Expect = 6e-84,   Method: Compositional matrix adjust.
 Identities = 185/528 (35%), Positives = 288/528 (54%), Gaps = 19/528 (3%)

Query: 80  ICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVF---NSMPIK-NV 135
           IC  A   R+  AR+LF+++P+ N+  WNSM  G  ++    E   +F     M I+ N 
Sbjct: 142 IC--ATLKRMTYARQLFDQIPDPNIALWNSMFRGYAQSESYREVVFLFFQMKGMDIRPNC 199

Query: 136 ISWNAMIA--GYVECCMMGEAI--VLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRR 191
            ++  ++   G +   + GE +   L +     N    T++I  Y   G V + Y +F  
Sbjct: 200 FTFPVVLKSCGKINALIEGEQVHCFLIKCGFRGNPFVGTTLIDMYSAGGTVGDAYKIFCE 259

Query: 192 MPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRL 251
           M  +NVV+WT+MI G+  +     +  LF       D     +V   N M++GYI  G +
Sbjct: 260 MFERNVVAWTSMINGYILSADLVSARRLF-------DLAPERDVVLWNIMVSGYIEGGDM 312

Query: 252 EEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNE 311
            EA+ LF  +P RD + W +++ GY + G V     LF  MP+R+  +W A+I G   N 
Sbjct: 313 VEARKLFXEMPNRDVMFWNTVLKGYATNGNVEALEGLFEEMPERNIFSWNALIGGYAHNG 372

Query: 312 LFVEATYLFMEMRAHG-VPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILE 370
           LF E    F  M +   VPP +AT   +  A      +DLG+ +H     +  + ++ + 
Sbjct: 373 LFFEVLGSFKRMLSESDVPPNDATLVTVLSACARLGALDLGKWVHVYAESSGLKGNVYVG 432

Query: 371 NCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTH 430
           N L+ MYAKCG+I+NA ++F  M ++DL+SWN+++ G + H    + L +F  M  +G  
Sbjct: 433 NALMDMYAKCGIIENAISVFRGMDTKDLISWNTLIGGLAMHSRGADALNLFFQMKNAGQK 492

Query: 431 PNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEE 490
           P+ +TF+GIL AC+H GLV  G+  F +M D Y I P  EHY  M+++L RAG++++A  
Sbjct: 493 PDGITFIGILCACTHMGLVEDGFAYFQSMADDYLIMPQIEHYGCMVDMLARAGRLEQAXA 552

Query: 491 FVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASG 550
           FV ++P E D  IW  LLGAC   + N E+AE A +RL+EL+P N   +V+L NIY  +G
Sbjct: 553 FVRKMPVEADGVIWAGLLGACRIYK-NVELAELALQRLIELEPKNPANYVMLSNIYGDAG 611

Query: 551 RHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
           R  +  +L++ M   G +K+PGCS +  N  +  F S D+   Q+ EI
Sbjct: 612 RWEDVARLKVAMRDTGFKKLPGCSLIEVNDAVVEFYSLDERHPQIEEI 659



 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 97/339 (28%), Positives = 156/339 (46%), Gaps = 55/339 (16%)

Query: 15  TSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVV 74
           T+ I  YS  G + +A  +F  M +RNVV++ +M++G++ +  L  ARRLF+  PER+VV
Sbjct: 238 TTLIDMYSAGGTVGDAYKIFCEMFERNVVAWTSMINGYILSADLVSARRLFDLAPERDVV 297

Query: 75  SWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKN 134
            W  M+ G  + G + EARKLF EMP R+V+ WN+++ G   NG +     +F  MP +N
Sbjct: 298 LWNIMVSGYIEGGDMVEARKLFXEMPNRDVMFWNTVLKGYATNGNVEALEGLFEEMPERN 357

Query: 135 VISWNAMIAGYVECCMMGEAIVLFEEMEER------------------------------ 164
           + SWNA+I GY    +  E +  F+ M                                 
Sbjct: 358 IFSWNALIGGYAHNGLFFEVLGSFKRMLSESDVPPNDATLVTVLSACARLGALDLGKWVH 417

Query: 165 ----------NVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHK 214
                     NV    +++  Y + G +E    +FR M  K+++SW  +IGG A +    
Sbjct: 418 VYAESSGLKGNVYVGNALMDMYAKCGIIENAISVFRGMDTKDLISWNTLIGGLAMHSRGA 477

Query: 215 ESLLLFIEMK-------GICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEI 267
           ++L LF +MK       GI   G  C       + +G+  F      Q++ D   +  +I
Sbjct: 478 DALNLFFQMKNAGQKPDGITFIGILCACTHMGLVEDGFAYF------QSMADDYLIMPQI 531

Query: 268 S-WTSMIDGYLSVGQVSNAYYLFHNMP-DRDAVAWTAMI 304
             +  M+D     G++  A      MP + D V W  ++
Sbjct: 532 EHYGCMVDMLARAGRLEQAXAFVRKMPVEADGVIWAGLL 570



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 48/183 (26%), Positives = 75/183 (40%), Gaps = 31/183 (16%)

Query: 226 ICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNA 285
           I  NG   N      ++       R+  A+ LFD +P  +   W SM  GY         
Sbjct: 124 IIANGFQYNEYITPKLVTICATLKRMTYARQLFDQIPDPNIALWNSMFRGY--------- 174

Query: 286 YYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGAT 345
                                  Q+E + E  +LF +M+   + P   TF V+  + G  
Sbjct: 175 ----------------------AQSESYREVVFLFFQMKGMDIRPNCFTFPVVLKSCGKI 212

Query: 346 ANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMV 405
             +  G Q+HC L+K     +  +   LI MY+  G + +AY IF  M  R++V+W SM+
Sbjct: 213 NALIEGEQVHCFLIKCGFRGNPFVGTTLIDMYSAGGTVGDAYKIFCEMFERNVVAWTSMI 272

Query: 406 MGF 408
            G+
Sbjct: 273 NGY 275



 Score = 43.9 bits (102), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 47/214 (21%), Positives = 88/214 (41%), Gaps = 14/214 (6%)

Query: 353 QIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHG 412
           QI   ++    + +  +   L+++ A    +  A  +F  +   ++  WNSM  G++   
Sbjct: 119 QIQAQIIANGFQYNEYITPKLVTICATLKRMTYARQLFDQIPDPNIALWNSMFRGYAQSE 178

Query: 413 LANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHY 472
              E + +F  M      PN  TF  +L +C     +  G E  +        +  P   
Sbjct: 179 SYREVVFLFFQMKGMDIRPNCFTFPVVLKSCGKINALIEG-EQVHCFLIKCGFRGNPFVG 237

Query: 473 VSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELD 532
            ++I++    G + +A +    + FE +   W +++        +A++   +A+RL +L 
Sbjct: 238 TTLIDMYSAGGTVGDAYKIFCEM-FERNVVAWTSMINGYIL---SADLV--SARRLFDLA 291

Query: 533 PLNAPAHVVLCNI----YAASGRHVEEHKLRMDM 562
           P      VVL NI    Y   G  VE  KL  +M
Sbjct: 292 P---ERDVVLWNIMVSGYIEGGDMVEARKLFXEM 322


>gi|225423995|ref|XP_002279343.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 623

 Score =  318 bits (814), Expect = 6e-84,   Method: Compositional matrix adjust.
 Identities = 185/528 (35%), Positives = 288/528 (54%), Gaps = 19/528 (3%)

Query: 80  ICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVF---NSMPIK-NV 135
           IC  A   R+  AR+LF+++P+ N+  WNSM  G  ++    E   +F     M I+ N 
Sbjct: 79  IC--ATLKRMTYARQLFDQIPDPNIALWNSMFRGYAQSESYREVVFLFFQMKGMDIRPNC 136

Query: 136 ISWNAMIA--GYVECCMMGEAI--VLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRR 191
            ++  ++   G +   + GE +   L +     N    T++I  Y   G V + Y +F  
Sbjct: 137 FTFPVVLKSCGKINALIEGEQVHCFLIKCGFRGNPFVGTTLIDMYSAGGTVGDAYKIFCE 196

Query: 192 MPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRL 251
           M  +NVV+WT+MI G+  +     +  LF       D     +V   N M++GYI  G +
Sbjct: 197 MFERNVVAWTSMINGYILSADLVSARRLF-------DLAPERDVVLWNIMVSGYIEGGDM 249

Query: 252 EEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNE 311
            EA+ LF  +P RD + W +++ GY + G V     LF  MP+R+  +W A+I G   N 
Sbjct: 250 VEARKLFHEMPNRDVMFWNTVLKGYATNGNVEALEGLFEEMPERNIFSWNALIGGYAHNG 309

Query: 312 LFVEATYLFMEMRAHG-VPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILE 370
           LF E    F  M +   VPP +AT   +  A      +DLG+ +H     +  + ++ + 
Sbjct: 310 LFFEVLGSFKRMLSESDVPPNDATLVTVLSACARLGALDLGKWVHVYAESSGLKGNVYVG 369

Query: 371 NCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTH 430
           N L+ MYAKCG+I+NA ++F  M ++DL+SWN+++ G + H    + L +F  M  +G  
Sbjct: 370 NALMDMYAKCGIIENAISVFRGMDTKDLISWNTLIGGLAMHSRGADALNLFFQMKNAGQK 429

Query: 431 PNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEE 490
           P+ +TF+GIL AC+H GLV  G+  F +M D Y I P  EHY  M+++L RAG++++A  
Sbjct: 430 PDGITFIGILCACTHMGLVEDGFAYFQSMADDYLIMPQIEHYGCMVDMLARAGRLEQAMA 489

Query: 491 FVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASG 550
           FV ++P E D  IW  LLGAC   + N E+AE A +RL+EL+P N   +V+L NIY  +G
Sbjct: 490 FVRKMPVEADGVIWAGLLGACRIYK-NVELAELALQRLIELEPKNPANYVMLSNIYGDAG 548

Query: 551 RHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
           R  +  +L++ M   G +K+PGCS +  N  +  F S D+   Q+ EI
Sbjct: 549 RWEDVARLKVAMRDTGFKKLPGCSLIEVNDAVVEFYSLDERHPQIEEI 596



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 97/339 (28%), Positives = 156/339 (46%), Gaps = 55/339 (16%)

Query: 15  TSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVV 74
           T+ I  YS  G + +A  +F  M +RNVV++ +M++G++ +  L  ARRLF+  PER+VV
Sbjct: 175 TTLIDMYSAGGTVGDAYKIFCEMFERNVVAWTSMINGYILSADLVSARRLFDLAPERDVV 234

Query: 75  SWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKN 134
            W  M+ G  + G + EARKLF EMP R+V+ WN+++ G   NG +     +F  MP +N
Sbjct: 235 LWNIMVSGYIEGGDMVEARKLFHEMPNRDVMFWNTVLKGYATNGNVEALEGLFEEMPERN 294

Query: 135 VISWNAMIAGYVECCMMGEAIVLFEEMEER------------------------------ 164
           + SWNA+I GY    +  E +  F+ M                                 
Sbjct: 295 IFSWNALIGGYAHNGLFFEVLGSFKRMLSESDVPPNDATLVTVLSACARLGALDLGKWVH 354

Query: 165 ----------NVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHK 214
                     NV    +++  Y + G +E    +FR M  K+++SW  +IGG A +    
Sbjct: 355 VYAESSGLKGNVYVGNALMDMYAKCGIIENAISVFRGMDTKDLISWNTLIGGLAMHSRGA 414

Query: 215 ESLLLFIEMK-------GICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEI 267
           ++L LF +MK       GI   G  C       + +G+  F      Q++ D   +  +I
Sbjct: 415 DALNLFFQMKNAGQKPDGITFIGILCACTHMGLVEDGFAYF------QSMADDYLIMPQI 468

Query: 268 S-WTSMIDGYLSVGQVSNAYYLFHNMP-DRDAVAWTAMI 304
             +  M+D     G++  A      MP + D V W  ++
Sbjct: 469 EHYGCMVDMLARAGRLEQAMAFVRKMPVEADGVIWAGLL 507



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 48/183 (26%), Positives = 75/183 (40%), Gaps = 31/183 (16%)

Query: 226 ICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNA 285
           I  NG   N      ++       R+  A+ LFD +P  +   W SM  GY         
Sbjct: 61  IIANGFQYNEYITPKLVTICATLKRMTYARQLFDQIPDPNIALWNSMFRGY--------- 111

Query: 286 YYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGAT 345
                                  Q+E + E  +LF +M+   + P   TF V+  + G  
Sbjct: 112 ----------------------AQSESYREVVFLFFQMKGMDIRPNCFTFPVVLKSCGKI 149

Query: 346 ANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMV 405
             +  G Q+HC L+K     +  +   LI MY+  G + +AY IF  M  R++V+W SM+
Sbjct: 150 NALIEGEQVHCFLIKCGFRGNPFVGTTLIDMYSAGGTVGDAYKIFCEMFERNVVAWTSMI 209

Query: 406 MGF 408
            G+
Sbjct: 210 NGY 212



 Score = 43.1 bits (100), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 47/214 (21%), Positives = 88/214 (41%), Gaps = 14/214 (6%)

Query: 353 QIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHG 412
           QI   ++    + +  +   L+++ A    +  A  +F  +   ++  WNSM  G++   
Sbjct: 56  QIQAQIIANGFQYNEYITPKLVTICATLKRMTYARQLFDQIPDPNIALWNSMFRGYAQSE 115

Query: 413 LANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHY 472
              E + +F  M      PN  TF  +L +C     +  G E  +        +  P   
Sbjct: 116 SYREVVFLFFQMKGMDIRPNCFTFPVVLKSCGKINALIEG-EQVHCFLIKCGFRGNPFVG 174

Query: 473 VSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELD 532
            ++I++    G + +A +    + FE +   W +++        +A++   +A+RL +L 
Sbjct: 175 TTLIDMYSAGGTVGDAYKIFCEM-FERNVVAWTSMINGYIL---SADLV--SARRLFDLA 228

Query: 533 PLNAPAHVVLCNI----YAASGRHVEEHKLRMDM 562
           P      VVL NI    Y   G  VE  KL  +M
Sbjct: 229 P---ERDVVLWNIMVSGYIEGGDMVEARKLFHEM 259


>gi|359481513|ref|XP_003632631.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53360,
           mitochondrial-like [Vitis vinifera]
          Length = 755

 Score =  318 bits (814), Expect = 7e-84,   Method: Compositional matrix adjust.
 Identities = 193/655 (29%), Positives = 338/655 (51%), Gaps = 67/655 (10%)

Query: 1   MSERNHPK-SLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLS 59
           +  ++HP  +L  H+   +  Y K   + +A+ +F  MP+RNVVS+ ++++G+ QNG+  
Sbjct: 90  LKSKSHPDLTLQNHI---LNMYGKCKSLKDAQKVFDAMPERNVVSWTSVIAGYSQNGQGG 146

Query: 60  EARRLFEEMPERNVV----SWTAMICGLADAGRVCEARKLFEEMPER----NVVSWNSMV 111
            A   + +M +  V+    ++ ++I   +  G +   R+L   + +     ++++ N+++
Sbjct: 147 NALEFYFQMLQSGVMPDQFTFGSIIKACSSLGDIGLGRQLHAHVLKSEFGAHIIAQNALI 206

Query: 112 VGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEE-------- 163
               ++  + +A  VF+ M  +++ISW +MIAG+ +     EA+  F+EM          
Sbjct: 207 SMYTKSNLIIDALDVFSRMATRDLISWGSMIAGFSQLGYELEALCYFKEMLHQGVYLPNE 266

Query: 164 --------------------------------RNVVTWTSMISGYCRAGEVEEGYCLFRR 191
                                           R+V    S+   Y + G +     +F +
Sbjct: 267 FIFGSVFSACSSLLQPEYGRQLHGMSIKFGLGRDVFAGCSLCDMYAKCGLLSCARVVFYQ 326

Query: 192 MPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKG-------ICDNGNNCNVQSCNSMING 244
           + R ++V+W A+I GFA+ G  KE++  F +M+        I      C   S + +  G
Sbjct: 327 IGRPDLVAWNAIIAGFAYGGDAKEAIAFFSQMRHQGLIPDEITVRSLLCACTSPSELYQG 386

Query: 245 YIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMP-DRDAVAWTAM 303
               G + +     D VPV +     +++  Y    ++ +A + F  M  + D V+W A+
Sbjct: 387 MQVHGYINKMGLDLD-VPVCN-----TLLTMYAKCSELRDAIFFFEEMRCNADLVSWNAI 440

Query: 304 ISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTES 363
           ++  ++++   E   L   M      P   T + + GA+  T +I++G Q+HC  +KT  
Sbjct: 441 LTACMRHDQAEEVFRLLKLMCISQHRPDYITLTNVLGASAETVSIEIGNQVHCYALKTGL 500

Query: 364 ESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFES 423
             D  + N LI +YAKCG +  A+ IF +M++ D+VSW+S+++G++  G   E LK+F++
Sbjct: 501 NCDTSVTNGLIDLYAKCGSLKTAHKIFDSMINPDVVSWSSLILGYAQFGYGEEALKLFKT 560

Query: 424 MLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAG 483
           M      PN VTF+G+L+ACSH GLV  GW+L+  M   + I P  EH   M++LL RAG
Sbjct: 561 MRRLDVKPNHVTFVGVLTACSHVGLVEEGWKLYGTMEKEFGIAPTREHCSCMVDLLARAG 620

Query: 484 KIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLC 543
            + EAE F+ ++ F+PD  +W  LL AC    GN ++ + AA+ +L++DP N+ AHV+LC
Sbjct: 621 CLNEAEGFIHQMAFDPDIVVWKTLLAACK-THGNVDVGKRAAENILKIDPSNSAAHVLLC 679

Query: 544 NIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
           NIYA+ G   +  +LR  M  +GVRKVPG SW+     I +F   D +  +  +I
Sbjct: 680 NIYASKGNWEDVARLRSLMKQRGVRKVPGQSWIEVKDRIHVFFVEDSLHPERNKI 734



 Score = 96.3 bits (238), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 50/153 (32%), Positives = 86/153 (56%), Gaps = 1/153 (0%)

Query: 304 ISGLVQNELFVEATYLF-MEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTE 362
           I+ L + +LF EA   F    +  G     +T++ L  A     +++ G++IH  ++K++
Sbjct: 34  ITSLCKQKLFNEAIKAFEFLQKKTGFCLTLSTYAYLISACSYLRSLEHGKKIHDHMLKSK 93

Query: 363 SESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFE 422
           S  DL L+N +++MY KC  + +A  +F  M  R++VSW S++ G+S +G     L+ + 
Sbjct: 94  SHPDLTLQNHILNMYGKCKSLKDAQKVFDAMPERNVVSWTSVIAGYSQNGQGGNALEFYF 153

Query: 423 SMLESGTHPNSVTFLGILSACSHAGLVSRGWEL 455
            ML+SG  P+  TF  I+ ACS  G +  G +L
Sbjct: 154 QMLQSGVMPDQFTFGSIIKACSSLGDIGLGRQL 186


>gi|449458990|ref|XP_004147229.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like [Cucumis sativus]
          Length = 667

 Score =  318 bits (814), Expect = 7e-84,   Method: Compositional matrix adjust.
 Identities = 173/498 (34%), Positives = 277/498 (55%), Gaps = 11/498 (2%)

Query: 103 NVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECC-MMGEAIVLFEEM 161
           +VVS N  +   +R  +L  AR VF  M ++  ++WN M++GY +    + EA  LF+++
Sbjct: 72  DVVSLNKTIASFVRACDLESARNVFEKMSVRTTVTWNTMLSGYTKVAGKVKEAHELFDKI 131

Query: 162 EERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFI 221
            E + V++  M+  Y R+  V+     F +MP K++ SW  +I GFA NG  +++  LF 
Sbjct: 132 PEPDSVSYNIMLVCYLRSYGVKAALAFFNKMPVKDIASWNTLISGFAQNGQMQKAFDLFS 191

Query: 222 EMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQ 281
            M          N  S ++MI+GY+  G LE A+ L+  V ++  +  T+M+ GY+  G+
Sbjct: 192 VMP-------EKNGVSWSAMISGYVEHGDLEAAEELYKNVGMKSVVVETAMLTGYMKFGK 244

Query: 282 VSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFS-VLFG 340
           V  A  +F  M  ++ V W +MI+G V+N    +   +F  M    V P   + S VL G
Sbjct: 245 VELAERIFQRMAVKNLVTWNSMIAGYVENCRAEDGLKVFKTMIESRVRPNPLSLSSVLLG 304

Query: 341 AAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVS 400
            +  +A + LGRQ+H ++ K+    D      LISMY KCG +D+A+ +F  M  +D+++
Sbjct: 305 CSNLSA-LPLGRQMHQLVSKSPLSKDTTACTSLISMYCKCGDLDSAWKLFLEMPRKDVIT 363

Query: 401 WNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMF 460
           WN+M+ G++ HG   + L +F+ M      P+ +TF+ ++ AC+HAG V  G + F +M 
Sbjct: 364 WNAMISGYAQHGAGRKALHLFDKMRNGTMKPDWITFVAVILACNHAGFVDLGVQYFKSMK 423

Query: 461 DVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEI 520
             + I+  P HY  +I+LLGRAG++ EA   +  +PF P   I+G LLGAC     N ++
Sbjct: 424 KEFGIEAKPVHYTCVIDLLGRAGRLDEAVSLIKEMPFTPHAAIYGTLLGACRI-HKNLDL 482

Query: 521 AEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNG 580
           AE AA+ LL LDP +A  +V L NIYAA+ +  +  K+R  M    V K+PG SW+    
Sbjct: 483 AEFAARNLLNLDPTSATGYVQLANIYAATNKWDQVAKVRKMMKEHNVVKIPGYSWIEIKS 542

Query: 581 GIQMFLSGDKIPAQVAEI 598
               F S D++  ++  I
Sbjct: 543 VTHEFRSSDRLHPELTSI 560



 Score =  201 bits (511), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 128/393 (32%), Positives = 216/393 (54%), Gaps = 13/393 (3%)

Query: 9   SLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQ-NGRLSEARRLFEE 67
           S VV L  +I  + +   ++ A+ +F+ M  R  V++N MLSG+ +  G++ EA  LF++
Sbjct: 71  SDVVSLNKTIASFVRACDLESARNVFEKMSVRTTVTWNTMLSGYTKVAGKVKEAHELFDK 130

Query: 68  MPERNVVSWTAM-ICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKV 126
           +PE + VS+  M +C L   G V  A   F +MP +++ SWN+++ G  +NG++ +A  +
Sbjct: 131 IPEPDSVSYNIMLVCYLRSYG-VKAALAFFNKMPVKDIASWNTLISGFAQNGQMQKAFDL 189

Query: 127 FNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGY 186
           F+ MP KN +SW+AMI+GYVE   +  A  L++ +  ++VV  T+M++GY + G+VE   
Sbjct: 190 FSVMPEKNGVSWSAMISGYVEHGDLEAAEELYKNVGMKSVVVETAMLTGYMKFGKVELAE 249

Query: 187 CLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYI 246
            +F+RM  KN+V+W +MI G+  N   ++ L +F   K + ++    N  S +S++ G  
Sbjct: 250 RIFQRMAVKNLVTWNSMIAGYVENCRAEDGLKVF---KTMIESRVRPNPLSLSSVLLGCS 306

Query: 247 RFGRL---EEAQNLFDTVPV-RDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTA 302
               L    +   L    P+ +D  + TS+I  Y   G + +A+ LF  MP +D + W A
Sbjct: 307 NLSALPLGRQMHQLVSKSPLSKDTTACTSLISMYCKCGDLDSAWKLFLEMPRKDVITWNA 366

Query: 303 MISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTE 362
           MISG  Q+    +A +LF +MR   + P   TF  +  A      +DLG Q +   MK E
Sbjct: 367 MISGYAQHGAGRKALHLFDKMRNGTMKPDWITFVAVILACNHAGFVDLGVQ-YFKSMKKE 425

Query: 363 --SESDLILENCLISMYAKCGVIDNAYNIFSNM 393
              E+  +   C+I +  + G +D A ++   M
Sbjct: 426 FGIEAKPVHYTCVIDLLGRAGRLDEAVSLIKEM 458



 Score = 46.6 bits (109), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 46/186 (24%), Positives = 93/186 (50%), Gaps = 21/186 (11%)

Query: 352 RQIHCVL-------MKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSM 404
           R+IH V        +  ++ SD++  N  I+ + +   +++A N+F  M  R  V+WN+M
Sbjct: 51  RRIHLVSPNNVTPNLHVDTASDVVSLNKTIASFVRACDLESARNVFEKMSVRTTVTWNTM 110

Query: 405 VMGFSH-HGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVY 463
           + G++   G   E  ++F+ + E    P+SV++  I+  C    L S G +   A F+  
Sbjct: 111 LSGYTKVAGKVKEAHELFDKIPE----PDSVSY-NIMLVCY---LRSYGVKAALAFFNKM 162

Query: 464 KIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCE-GNAEIAE 522
            ++     + ++I+   + G++++A +    +P E +   W A++   G+ E G+ E AE
Sbjct: 163 PVK-DIASWNTLISGFAQNGQMQKAFDLFSVMP-EKNGVSWSAMIS--GYVEHGDLEAAE 218

Query: 523 HAAKRL 528
              K +
Sbjct: 219 ELYKNV 224


>gi|212275047|ref|NP_001130303.1| uncharacterized protein LOC100191397 [Zea mays]
 gi|194688792|gb|ACF78480.1| unknown [Zea mays]
          Length = 706

 Score =  317 bits (813), Expect = 8e-84,   Method: Compositional matrix adjust.
 Identities = 194/606 (32%), Positives = 312/606 (51%), Gaps = 38/606 (6%)

Query: 21  YSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNV------V 74
           Y+K G + +A  LF  MP  N VS+ AM+ G  Q G + +A RLF  M    +      V
Sbjct: 86  YTKCGSVADAVRLFDGMPSPNEVSFTAMMGGLAQGGAVDDALRLFARMSRTGIRVDPVAV 145

Query: 75  SWTAMICGLADAGRVCEARKLFEEMPERNVVS----------WNSMVVGLIRNGELNEAR 124
           S     C  A AG    AR +        +V            NS+V    +  +++EA 
Sbjct: 146 SSVLGACAQACAGDYNVARAIQLAQSIHALVVRKGFGSDQHVGNSLVDLYAKGMKMDEAI 205

Query: 125 KVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEER----NVVTWTSMISGYCRAG 180
           KVF S+   +++SWN +I GY +      A+ + E M+E     N VT+++M++   +A 
Sbjct: 206 KVFESLSSVSIVSWNILITGYGQLGCYERAMEVLEFMQESGFEPNEVTYSNMLASCIKAR 265

Query: 181 EVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNS 240
           +V     +F ++P+ +V +W  ++ G+     H+E++ LF  M+       + NVQ   +
Sbjct: 266 DVPSARAMFDKIPKPSVTTWNTLLSGYGQEELHQETIDLFRRMQ-------HQNVQPDRT 318

Query: 241 ----MINGYIRFGRLEEAQNLFDTVPVR-----DEISWTSMIDGYLSVGQVSNAYYLFHN 291
               +++   R G  E  + +  +  VR     D    + +ID Y   GQV  A  +F+ 
Sbjct: 319 TLAVILSSCSRLGNFELGKQVH-SASVRLLLHNDMFVASGLIDIYSKCGQVGIALIIFNM 377

Query: 292 MPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLG 351
           M +RD V W +MISGL  + L  EA     +MR +G+ P  ++++ +       ++I  G
Sbjct: 378 MTERDVVCWNSMISGLAIHSLSEEAFDFLKQMRENGMFPTESSYASMINLCARLSSIPQG 437

Query: 352 RQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHH 411
           RQ+H  ++K   + ++ +   LI MYAK G +D+A   F+ M+ ++LV+WN M+ G++ +
Sbjct: 438 RQMHAQVLKDGYDQNVYVGCSLIDMYAKSGNMDDARLFFNCMIVKNLVAWNEMIHGYAQN 497

Query: 412 GLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEH 471
           G   + +++FE ML +   P+SVTF+ +L+ CSH+GLV      FN+M   Y I P  EH
Sbjct: 498 GFGEKAVELFEYMLTTKQKPDSVTFIAVLTGCSHSGLVDEAVTFFNSMESNYGITPLVEH 557

Query: 472 YVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLEL 531
           Y  +I+ L RA +  E E  + ++P++ D  +W  LL AC     NAE+ E +AK L  L
Sbjct: 558 YTCLIDALARAARFAEVEAVIGKMPYKDDPILWEVLLAAC-VVHHNAELGEFSAKHLFRL 616

Query: 532 DPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKI 591
           DP N   +V+L NIYA  GRH +   +R  M  +GV K  G SW+    G + F+  D +
Sbjct: 617 DPKNPSPYVLLSNIYATLGRHGDASAVRALMSSRGVVKGRGYSWVNHKDGSRAFMVADDL 676

Query: 592 PAQVAE 597
              V E
Sbjct: 677 GTDVGE 682



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 108/428 (25%), Positives = 191/428 (44%), Gaps = 64/428 (14%)

Query: 13  HLTSSITK-YSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPER 71
           H+ +S+   Y+K   +DEA  +F+ +   ++VS+N +++G+ Q G    A  + E M E 
Sbjct: 186 HVGNSLVDLYAKGMKMDEAIKVFESLSSVSIVSWNILITGYGQLGCYERAMEVLEFMQES 245

Query: 72  ----NVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVF 127
               N V+++ M+     A  V  AR +F+++P+ +V +WN+++ G  +     E   +F
Sbjct: 246 GFEPNEVTYSNMLASCIKARDVPSARAMFDKIPKPSVTTWNTLLSGYGQEELHQETIDLF 305

Query: 128 NSMPIKNV---------------------------------------ISWNAMIAGYVEC 148
             M  +NV                                          + +I  Y +C
Sbjct: 306 RRMQHQNVQPDRTTLAVILSSCSRLGNFELGKQVHSASVRLLLHNDMFVASGLIDIYSKC 365

Query: 149 CMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVV-----SWTAM 203
             +G A+++F  M ER+VV W SMISG       EE +   ++M R+N +     S+ +M
Sbjct: 366 GQVGIALIIFNMMTERDVVCWNSMISGLAIHSLSEEAFDFLKQM-RENGMFPTESSYASM 424

Query: 204 IGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPV 263
           I   A      +   +  +   +  +G + NV    S+I+ Y + G +++A+  F+ + V
Sbjct: 425 INLCARLSSIPQGRQMHAQ---VLKDGYDQNVYVGCSLIDMYAKSGNMDDARLFFNCMIV 481

Query: 264 RDEISWTSMIDGYLSVGQVSNAYYLFHNM----PDRDAVAWTAMISGLVQNELFVEATYL 319
           ++ ++W  MI GY   G    A  LF  M       D+V + A+++G   + L  EA   
Sbjct: 482 KNLVAWNEMIHGYAQNGFGEKAVELFEYMLTTKQKPDSVTFIAVLTGCSHSGLVDEAVTF 541

Query: 320 FMEMRA-HGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYA 378
           F  M + +G+ PL   ++ L  A    A      ++  V+ K   + D IL   L+   A
Sbjct: 542 FNSMESNYGITPLVEHYTCLIDALARAARF---AEVEAVIGKMPYKDDPILWEVLL---A 595

Query: 379 KCGVIDNA 386
            C V  NA
Sbjct: 596 ACVVHHNA 603



 Score =  101 bits (252), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 61/204 (29%), Positives = 108/204 (52%), Gaps = 7/204 (3%)

Query: 292 MPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLG 351
           MPDR+AV+W  +I+ + ++    EA  ++  M   G+ P N T + +  A GA A +D G
Sbjct: 1   MPDRNAVSWNTVIAAVARSGSPGEALEMYQGMLQEGLAPTNFTLASVLSACGAVAALDDG 60

Query: 352 RQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHH 411
           R+ H + +K   +    +EN L+ MY KCG + +A  +F  M S + VS+ +M+ G +  
Sbjct: 61  RRCHGLAVKVGLDGHQFVENGLLGMYTKCGSVADAVRLFDGMPSPNEVSFTAMMGGLAQG 120

Query: 412 GLANETLKVFESMLESGTHPNSVTFLGILSACSHAGL----VSRGWELFNAMFD-VYKIQ 466
           G  ++ L++F  M  +G   + V    +L AC+ A      V+R  +L  ++   V +  
Sbjct: 121 GAVDDALRLFARMSRTGIRVDPVAVSSVLGACAQACAGDYNVARAIQLAQSIHALVVRKG 180

Query: 467 PGPEHYV--SMINLLGRAGKIKEA 488
            G + +V  S+++L  +  K+ EA
Sbjct: 181 FGSDQHVGNSLVDLYAKGMKMDEA 204


>gi|326507326|dbj|BAJ95740.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 798

 Score =  317 bits (813), Expect = 9e-84,   Method: Compositional matrix adjust.
 Identities = 194/621 (31%), Positives = 308/621 (49%), Gaps = 63/621 (10%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWT 77
           + ++ K G I  A+ LF  MP+RNVVSY  M+   ++ GR++EA  L+E+ P  +V  +T
Sbjct: 158 VHEHVKAGDIASARGLFDGMPERNVVSYTTMVDALMKRGRVAEAVELYEQCPSGSVAFFT 217

Query: 78  AMICGLADAGRVCEARKLFEEMP------------------------------------- 100
           A I G         A  +F +M                                      
Sbjct: 218 ATISGFVRNELHHNALGVFRKMVSCGVRPNGITFVCMIKACVGAGEFGLAMSIVGSAIKS 277

Query: 101 ---ERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVL 157
              E ++   NS++   +R G+   ARKVF+ M +K+V+SW A++  Y E   +  A  +
Sbjct: 278 NFFESSIEVQNSLITLYLRMGDAAAARKVFDEMDVKDVVSWTALLDVYSESGDLDGARRV 337

Query: 158 FEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRM----PRKNVVSWTAMIGGFAW---- 209
            + M ERN V+W ++I+ + + G   E   L+ +M     R N+  +++++   A     
Sbjct: 338 LDAMPERNEVSWGTLIARHEQRGNAAEAVKLYSQMLADGCRPNISCFSSVLSACATLEDL 397

Query: 210 ---NGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDE 266
                 H  SL +          G++ NV   +S+I+ Y +  +  +AQ +FDT+P ++ 
Sbjct: 398 RGGARIHARSLKM----------GSSTNVFVSSSLIDMYCKCKKCRDAQTIFDTLPEKNI 447

Query: 267 ISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAH 326
           + W S+  GY   G++  A YLF  MP R+  +W  +ISG  QN  FV+A   F  M A 
Sbjct: 448 VCWNSLASGYSYNGKMVEAMYLFKKMPARNLASWNTIISGYAQNRQFVDALRSFNAMLAS 507

Query: 327 GVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNA 386
           G  P   TFS +  A     ++  G+  H   +K   E  + +   L  MYAK G + ++
Sbjct: 508 GQVPGEITFSSVLLACANLCSLVTGKMAHAKTIKLGMEESIFIGTALSDMYAKSGDLQSS 567

Query: 387 YNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHA 446
             +F  M  R+ V+W +M+ G + +G A E++ + E M+ +G  PN  TFL +L ACSH 
Sbjct: 568 KRMFYQMPERNDVTWTAMIQGLAENGFAEESILLLEDMMATGMTPNEHTFLALLFACSHG 627

Query: 447 GLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGA 506
           GLV +    F  M   + I P  +HY  M+++L RAG++ EAE  +++ P + +   W A
Sbjct: 628 GLVEQAIHYFEKM-QAWGISPKEKHYTCMVDVLARAGRLIEAEALLMKTPSKSEANSWAA 686

Query: 507 LLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKG 566
           LL AC   + N EI E AAKRL EL   N   +V+L N+YA+ GR  +  ++R+ M    
Sbjct: 687 LLSACNTYK-NEEIGERAAKRLHELGKDNTAGYVLLSNMYASCGRWKDAARIRVLMKGTT 745

Query: 567 VRKVPGCSWLMRNGGIQMFLS 587
           ++K  GCSW+   G    F S
Sbjct: 746 LKKDGGCSWVQVRGQYHAFFS 766



 Score =  162 bits (411), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 118/451 (26%), Positives = 206/451 (45%), Gaps = 77/451 (17%)

Query: 136 ISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRK 195
            +++ M+  +V+   +  A  LF+ M ERNVV++T+M+    + G V E   L+ + P  
Sbjct: 152 FTYDFMVHEHVKAGDIASARGLFDGMPERNVVSYTTMVDALMKRGRVAEAVELYEQCPSG 211

Query: 196 NVVSWTAMIGGFAWNGFHKESLLLFIEMK--GICDNGNN--CNVQSC------------- 238
           +V  +TA I GF  N  H  +L +F +M   G+  NG    C +++C             
Sbjct: 212 SVAFFTATISGFVRNELHHNALGVFRKMVSCGVRPNGITFVCMIKACVGAGEFGLAMSIV 271

Query: 239 ----------------NSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQV 282
                           NS+I  Y+R G    A+ +FD + V+D +SWT+++D Y   G +
Sbjct: 272 GSAIKSNFFESSIEVQNSLITLYLRMGDAAAARKVFDEMDVKDVVSWTALLDVYSESGDL 331

Query: 283 SNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAA 342
             A  +   MP+R+ V+W  +I+   Q     EA  L+ +M A G  P  + FS +  A 
Sbjct: 332 DGARRVLDAMPERNEVSWGTLIARHEQRGNAAEAVKLYSQMLADGCRPNISCFSSVLSAC 391

Query: 343 GATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWN 402
               ++  G +IH   +K  S +++ + + LI MY KC    +A  IF  +  +++V WN
Sbjct: 392 ATLEDLRGGARIHARSLKMGSSTNVFVSSSLIDMYCKCKKCRDAQTIFDTLPEKNIVCWN 451

Query: 403 SMVMGFSHHG----------------LAN---------------ETLKVFESMLESGTHP 431
           S+  G+S++G                LA+               + L+ F +ML SG  P
Sbjct: 452 SLASGYSYNGKMVEAMYLFKKMPARNLASWNTIISGYAQNRQFVDALRSFNAMLASGQVP 511

Query: 432 NSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYV----SMINLLGRAGKIKE 487
             +TF  +L AC++   +  G      M     I+ G E  +    ++ ++  ++G ++ 
Sbjct: 512 GEITFSSVLLACANLCSLVTG-----KMAHAKTIKLGMEESIFIGTALSDMYAKSGDLQS 566

Query: 488 AEEFVLRLPFEPDHRIWGAL---LGACGFCE 515
           ++    ++P E +   W A+   L   GF E
Sbjct: 567 SKRMFYQMP-ERNDVTWTAMIQGLAENGFAE 596


>gi|52076596|dbj|BAD45498.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|218187337|gb|EEC69764.1| hypothetical protein OsI_00012 [Oryza sativa Indica Group]
          Length = 810

 Score =  317 bits (813), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 201/652 (30%), Positives = 318/652 (48%), Gaps = 83/652 (12%)

Query: 25  GFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLA 84
           G +  A+A+F  MP +N+ S N +LS +  +G L  A+ LF   P RN  +WT M+   A
Sbjct: 57  GHLHRARAMFDQMPHKNIFSLNLILSAYSSSGDLPAAQHLFLSSPHRNATTWTIMMRAHA 116

Query: 85  DAGRVCEARKLFEEM------PERNVVSW----------------------------NSM 110
            AGR  +A  LF  M      P+R  V+                             N++
Sbjct: 117 AAGRTSDALSLFRAMLGEGVIPDRVTVTTVLNLPGCTVPSLHPFAIKFGLDTHVFVCNTL 176

Query: 111 VVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEER------ 164
           +    ++G L  AR+VF  M  K+ +++NAM+ G  +  +  +A+ LF  M         
Sbjct: 177 LDAYCKHGLLAAARRVFLEMHDKDAVTYNAMMMGCSKEGLHTQALQLFAAMRRAGIPATH 236

Query: 165 ---------------------------------NVVTWTSMISGYCRAGEVEEGYCLFRR 191
                                            NV    S++  Y +   +++   LF  
Sbjct: 237 FTFSSILTVAAGMAHLLLGHQVHALVLRSTSVLNVFVNNSLLDFYSKCDCLDDMRRLFDE 296

Query: 192 MPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMIN-----GYI 246
           MP ++ VS+  +I  +AWN      L LF EM+ +   G +  V    +M++       +
Sbjct: 297 MPERDNVSYNVIIAAYAWNQCAATVLRLFREMQKL---GFDRQVLPYATMLSVAGSLPDV 353

Query: 247 RFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISG 306
             G+   AQ +   +   D +   ++ID Y   G +  A   F N  ++ A++WTA+I+G
Sbjct: 354 HIGKQIHAQLVLLGLASEDLLG-NALIDMYSKCGMLDAAKSNFSNRSEKSAISWTALITG 412

Query: 307 LVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESD 366
            VQN    EA  LF +MR  G+ P  ATFS +  A+ + A I LGRQ+H  L+++  +S 
Sbjct: 413 YVQNGQHEEALQLFSDMRRAGLRPDRATFSSIIKASSSLAMIGLGRQLHSYLIRSGYKSS 472

Query: 367 LILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLE 426
           +   + L+ MYAKCG +D A   F  M  R+ +SWN+++  ++H+G A   +K+FE ML 
Sbjct: 473 VFSGSVLVDMYAKCGCLDEALRTFDEMPERNSISWNAVISAYAHYGEAKNAIKMFEGMLH 532

Query: 427 SGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIK 486
            G +P+SVTFL +L+ACSH GL     + F+ M   Y I P  EHY  +I+ LGR G   
Sbjct: 533 CGFNPDSVTFLSVLAACSHNGLADECMKYFHLMKHQYSISPWKEHYACVIDTLGRVGCFS 592

Query: 487 EAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIY 546
           + ++ ++ +PF+ D  IW ++L +C    GN E+A  AA +L  ++P +A  +V+L NIY
Sbjct: 593 QVQKMLVEMPFKADPIIWTSILHSCRI-HGNQELARVAADKLFGMEPTDATPYVILSNIY 651

Query: 547 AASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
           A +G+  +   ++  M  +GVRK  G SW+     I  F S D     + EI
Sbjct: 652 ARAGQWEDAACVKKIMRDRGVRKESGYSWVEIKQKIYSFASNDLTSPMIDEI 703



 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 58/221 (26%), Positives = 103/221 (46%), Gaps = 21/221 (9%)

Query: 4   RNHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARR 63
           R+  KS V   +  +  Y+K G +DEA   F  MP+RN +S+NA++S +   G    A +
Sbjct: 466 RSGYKSSVFSGSVLVDMYAKCGCLDEALRTFDEMPERNSISWNAVISAYAHYGEAKNAIK 525

Query: 64  LFEEMPE----RNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVS-----WNSMVVGL 114
           +FE M       + V++ +++   +  G   E  K F  M  +  +S     +  ++  L
Sbjct: 526 MFEGMLHCGFNPDSVTFLSVLAACSHNGLADECMKYFHLMKHQYSISPWKEHYACVIDTL 585

Query: 115 IRNGELNEARKVFNSMPIK-NVISWNAM-----IAGYVECCMMGEAIVLFEEMEERNVVT 168
            R G  ++ +K+   MP K + I W ++     I G  E   +  A  LF  ME  +   
Sbjct: 586 GRVGCFSQVQKMLVEMPFKADPIIWTSILHSCRIHGNQELARVA-ADKLF-GMEPTDATP 643

Query: 169 WTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAW 209
           +  + + Y RAG+ E+  C+ + M  + V   +    G++W
Sbjct: 644 YVILSNIYARAGQWEDAACVKKIMRDRGVRKES----GYSW 680


>gi|413935694|gb|AFW70245.1| hypothetical protein ZEAMMB73_875976 [Zea mays]
          Length = 807

 Score =  317 bits (812), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 194/606 (32%), Positives = 312/606 (51%), Gaps = 38/606 (6%)

Query: 21  YSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNV------V 74
           Y+K G + +A  LF  MP  N VS+ AM+ G  Q G + +A RLF  M    +      V
Sbjct: 187 YTKCGSVADAVRLFDGMPSPNEVSFTAMMGGLAQGGAVDDALRLFARMSRTGIRVDPVAV 246

Query: 75  SWTAMICGLADAGRVCEARKLFEEMPERNVVS----------WNSMVVGLIRNGELNEAR 124
           S     C  A AG    AR +        +V            NS+V    +  +++EA 
Sbjct: 247 SSVLGACAQACAGDYNVARAIQLAQSIHALVVRKGFGSDQHVGNSLVDLYAKGMKMDEAI 306

Query: 125 KVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEER----NVVTWTSMISGYCRAG 180
           KVF S+   +++SWN +I GY +      A+ + E M+E     N VT+++M++   +A 
Sbjct: 307 KVFESLSSVSIVSWNILITGYGQLGCYERAMEVLEFMQESGFEPNEVTYSNMLASCIKAR 366

Query: 181 EVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNS 240
           +V     +F ++P+ +V +W  ++ G+     H+E++ LF  M+       + NVQ   +
Sbjct: 367 DVPSARAMFDKIPKPSVTTWNTLLSGYGQEELHQETIDLFRRMQ-------HQNVQPDRT 419

Query: 241 ----MINGYIRFGRLEEAQNLFDTVPVR-----DEISWTSMIDGYLSVGQVSNAYYLFHN 291
               +++   R G  E  + +  +  VR     D    + +ID Y   GQV  A  +F+ 
Sbjct: 420 TLAVILSSCSRLGNFELGKQVH-SASVRLLLHNDMFVASGLIDIYSKCGQVGIALIIFNM 478

Query: 292 MPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLG 351
           M +RD V W +MISGL  + L  EA     +MR +G+ P  ++++ +       ++I  G
Sbjct: 479 MTERDVVCWNSMISGLAIHSLSEEAFDFLKQMRENGMFPTESSYASMINLCARLSSIPQG 538

Query: 352 RQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHH 411
           RQ+H  ++K   + ++ +   LI MYAK G +D+A   F+ M+ ++LV+WN M+ G++ +
Sbjct: 539 RQMHAQVLKDGYDQNVYVGCSLIDMYAKSGNMDDARLFFNCMIVKNLVAWNEMIHGYAQN 598

Query: 412 GLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEH 471
           G   + +++FE ML +   P+SVTF+ +L+ CSH+GLV      FN+M   Y I P  EH
Sbjct: 599 GFGEKAVELFEYMLTTKQKPDSVTFIAVLTGCSHSGLVDEAVTFFNSMESNYGITPLVEH 658

Query: 472 YVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLEL 531
           Y  +I+ L RA +  E E  + ++P++ D  +W  LL AC     NAE+ E +AK L  L
Sbjct: 659 YTCLIDALARAARFAEVEAVIGKMPYKDDPILWEVLLAAC-VVHHNAELGEFSAKHLFRL 717

Query: 532 DPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKI 591
           DP N   +V+L NIYA  GRH +   +R  M  +GV K  G SW+    G + F+  D +
Sbjct: 718 DPKNPSPYVLLSNIYATLGRHGDASAVRALMSSRGVVKGRGYSWVNHKDGSRAFMVADDL 777

Query: 592 PAQVAE 597
              V E
Sbjct: 778 GTDVGE 783



 Score =  181 bits (460), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 127/531 (23%), Positives = 231/531 (43%), Gaps = 88/531 (16%)

Query: 46  NAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVV 105
           N ++  +  +G    A R F  +P  NV S+ A I     AG +  AR L   MP+RN V
Sbjct: 49  NRLVELYSLSGLPCHALRAFRALPHPNVYSYNAAISAACRAGDLAAARDLLGRMPDRNAV 108

Query: 106 SWNSMVVGLIRNGELNEARKVFNSM----------PIKNVISW----------------- 138
           SWN+++  + R+G   EA +++  M           + +V+S                  
Sbjct: 109 SWNTVIAAVARSGSPGEALEMYQGMLQEGLAPTNFTLASVLSACGAVAALDDGRRCHGLA 168

Query: 139 ------------NAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGY 186
                       N ++  Y +C  + +A+ LF+ M   N V++T+M+ G  + G V++  
Sbjct: 169 VKVGLDGHQFVENGLLGMYTKCGSVADAVRLFDGMPSPNEVSFTAMMGGLAQGGAVDDAL 228

Query: 187 CLFRRMPRKNV----VSWTAMIGGFAWNGFHKESLLLFIEMKG-----ICDNGNNCNVQS 237
            LF RM R  +    V+ ++++G  A       ++   I++       +   G   +   
Sbjct: 229 RLFARMSRTGIRVDPVAVSSVLGACAQACAGDYNVARAIQLAQSIHALVVRKGFGSDQHV 288

Query: 238 CNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVG----------------- 280
            NS+++ Y +  +++EA  +F+++     +SW  +I GY  +G                 
Sbjct: 289 GNSLVDLYAKGMKMDEAIKVFESLSSVSIVSWNILITGYGQLGCYERAMEVLEFMQESGF 348

Query: 281 ------------------QVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFME 322
                              V +A  +F  +P      W  ++SG  Q EL  E   LF  
Sbjct: 349 EPNEVTYSNMLASCIKARDVPSARAMFDKIPKPSVTTWNTLLSGYGQEELHQETIDLFRR 408

Query: 323 MRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGV 382
           M+   V P   T +V+  +     N +LG+Q+H   ++    +D+ + + LI +Y+KCG 
Sbjct: 409 MQHQNVQPDRTTLAVILSSCSRLGNFELGKQVHSASVRLLLHNDMFVASGLIDIYSKCGQ 468

Query: 383 IDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSA 442
           +  A  IF+ M  RD+V WNSM+ G + H L+ E     + M E+G  P   ++  +++ 
Sbjct: 469 VGIALIIFNMMTERDVVCWNSMISGLAIHSLSEEAFDFLKQMRENGMFPTESSYASMINL 528

Query: 443 CSHAGLVSRGWELFNAMFDVYKIQPGPEHYV--SMINLLGRAGKIKEAEEF 491
           C+    + +G ++      V K       YV  S+I++  ++G + +A  F
Sbjct: 529 CARLSSIPQGRQMHA---QVLKDGYDQNVYVGCSLIDMYAKSGNMDDARLF 576



 Score = 62.4 bits (150), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 45/142 (31%), Positives = 70/142 (49%), Gaps = 12/142 (8%)

Query: 16  SSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEM----PER 71
           S I  Y+K G +D+A+  F  M  +N+V++N M+ G+ QNG   +A  LFE M     + 
Sbjct: 559 SLIDMYAKSGNMDDARLFFNCMIVKNLVAWNEMIHGYAQNGFGEKAVELFEYMLTTKQKP 618

Query: 72  NVVSWTAMICGLADAGRVCEARKLFEEMPERN------VVSWNSMVVGLIRNGELNEARK 125
           + V++ A++ G + +G V EA   F  M E N      V  +  ++  L R     E   
Sbjct: 619 DSVTFIAVLTGCSHSGLVDEAVTFFNSM-ESNYGITPLVEHYTCLIDALARAARFAEVEA 677

Query: 126 VFNSMPIK-NVISWNAMIAGYV 146
           V   MP K + I W  ++A  V
Sbjct: 678 VIGKMPYKDDPILWEVLLAACV 699


>gi|15223809|ref|NP_177827.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75098688|sp|O49287.1|PP127_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g77010, mitochondrial; Flags: Precursor
 gi|2829915|gb|AAC00623.1| Hypothetical protein [Arabidopsis thaliana]
 gi|332197804|gb|AEE35925.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 695

 Score =  317 bits (812), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 189/634 (29%), Positives = 314/634 (49%), Gaps = 68/634 (10%)

Query: 9   SLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEM 68
           S+V+     +  YS+ G +  A+ LF  MP RN  S+N M+ G++ +G    + R F+ M
Sbjct: 60  SIVIVANHLLQMYSRSGKMGIARNLFDEMPDRNYFSWNTMIEGYMNSGEKGTSLRFFDMM 119

Query: 69  PERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVF- 127
           PER+  SW  ++ G A AG +  AR+LF  MPE++VV+ NS++ G I NG   EA ++F 
Sbjct: 120 PERDGYSWNVVVSGFAKAGELSVARRLFNAMPEKDVVTLNSLLHGYILNGYAEEALRLFK 179

Query: 128 ------NSMPIKNVISWNA---------------MIAG--------------YVECCMMG 152
                 +++ +  V+   A               +I G              Y +C  + 
Sbjct: 180 ELNFSADAITLTTVLKACAELEALKCGKQIHAQILIGGVECDSKMNSSLVNVYAKCGDLR 239

Query: 153 EAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGF 212
            A  + E++ E +  + +++ISGY   G V E   LF R   + V+ W +MI G+  N  
Sbjct: 240 MASYMLEQIREPDDHSLSALISGYANCGRVNESRGLFDRKSNRCVILWNSMISGYIANNM 299

Query: 213 HKESLLLFIEMK--------------------GICDNGNNCNVQSC-----------NSM 241
             E+L+LF EM+                    G  + G   +  +C           +++
Sbjct: 300 KMEALVLFNEMRNETREDSRTLAAVINACIGLGFLETGKQMHCHACKFGLIDDIVVASTL 359

Query: 242 INGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWT 301
           ++ Y + G   EA  LF  V   D I   SMI  Y S G++ +A  +F  + ++  ++W 
Sbjct: 360 LDMYSKCGSPMEACKLFSEVESYDTILLNSMIKVYFSCGRIDDAKRVFERIENKSLISWN 419

Query: 302 AMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKT 361
           +M +G  QN   VE    F +M    +P    + S +  A  + ++++LG Q+       
Sbjct: 420 SMTNGFSQNGCTVETLEYFHQMHKLDLPTDEVSLSSVISACASISSLELGEQVFARATIV 479

Query: 362 ESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVF 421
             +SD ++ + LI +Y KCG +++   +F  MV  D V WNSM+ G++ +G   E + +F
Sbjct: 480 GLDSDQVVSSSLIDLYCKCGFVEHGRRVFDTMVKSDEVPWNSMISGYATNGQGFEAIDLF 539

Query: 422 ESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGR 481
           + M  +G  P  +TF+ +L+AC++ GLV  G +LF +M   +   P  EH+  M++LL R
Sbjct: 540 KKMSVAGIRPTQITFMVVLTACNYCGLVEEGRKLFESMKVDHGFVPDKEHFSCMVDLLAR 599

Query: 482 AGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVV 541
           AG ++EA   V  +PF+ D  +W ++L  C    G   + + AA++++EL+P N+ A+V 
Sbjct: 600 AGYVEEAINLVEEMPFDVDGSMWSSILRGC-VANGYKAMGKKAAEKIIELEPENSVAYVQ 658

Query: 542 LCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSW 575
           L  I+A SG       +R  M    V K PG SW
Sbjct: 659 LSAIFATSGDWESSALVRKLMRENNVTKNPGSSW 692



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 132/530 (24%), Positives = 220/530 (41%), Gaps = 92/530 (17%)

Query: 7   PKSLVVHLTSSITKYSKRGFIDEAKALF-QLMPQRNVVSYNAMLSG-------------- 51
           P+  VV L S +  Y   G+ +EA  LF +L    + ++   +L                
Sbjct: 151 PEKDVVTLNSLLHGYILNGYAEEALRLFKELNFSADAITLTTVLKACAELEALKCGKQIH 210

Query: 52  ---------------------FLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVC 90
                                + + G L  A  + E++ E +  S +A+I G A+ GRV 
Sbjct: 211 AQILIGGVECDSKMNSSLVNVYAKCGDLRMASYMLEQIREPDDHSLSALISGYANCGRVN 270

Query: 91  EARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMP------------------- 131
           E+R LF+    R V+ WNSM+ G I N    EA  +FN M                    
Sbjct: 271 ESRGLFDRKSNRCVILWNSMISGYIANNMKMEALVLFNEMRNETREDSRTLAAVINACIG 330

Query: 132 -------------------IKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSM 172
                              I +++  + ++  Y +C    EA  LF E+E  + +   SM
Sbjct: 331 LGFLETGKQMHCHACKFGLIDDIVVASTLLDMYSKCGSPMEACKLFSEVESYDTILLNSM 390

Query: 173 ISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNN 232
           I  Y   G +++   +F R+  K+++SW +M  GF+ NG   E+L  F +M  +      
Sbjct: 391 IKVYFSCGRIDDAKRVFERIENKSLISWNSMTNGFSQNGCTVETLEYFHQMHKL---DLP 447

Query: 233 CNVQSCNSMINGYIRFGRLEEAQNLFDTVPV----RDEISWTSMIDGYLSVGQVSNAYYL 288
            +  S +S+I+       LE  + +F    +     D++  +S+ID Y   G V +   +
Sbjct: 448 TDEVSLSSVISACASISSLELGEQVFARATIVGLDSDQVVSSSLIDLYCKCGFVEHGRRV 507

Query: 289 FHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANI 348
           F  M   D V W +MISG   N    EA  LF +M   G+ P   TF V+  A      +
Sbjct: 508 FDTMVKSDEVPWNSMISGYATNGQGFEAIDLFKKMSVAGIRPTQITFMVVLTACNYCGLV 567

Query: 349 DLGRQIHCVLMKTESE--SDLILENCLISMYAKCGVIDNAYNIFSNM-VSRDLVSWNSMV 405
           + GR++    MK +     D    +C++ + A+ G ++ A N+   M    D   W+S++
Sbjct: 568 EEGRKLF-ESMKVDHGFVPDKEHFSCMVDLLARAGYVEEAINLVEEMPFDVDGSMWSSIL 626

Query: 406 MGFSHHGLANETLKVFESMLESGTHP-NSVTFLGILSACSHAGLVSRGWE 454
            G   +G      K  E ++E    P NSV ++ + +  + +G     WE
Sbjct: 627 RGCVANGYKAMGKKAAEKIIE--LEPENSVAYVQLSAIFATSG----DWE 670



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 59/206 (28%), Positives = 93/206 (45%), Gaps = 18/206 (8%)

Query: 350 LGRQIHCVLMKTESESDL-ILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGF 408
           L RQ + +L+K    S + I+ N L+ MY++ G +  A N+F  M  R+  SWN+M+ G+
Sbjct: 44  LWRQTNGLLLKKGFLSSIVIVANHLLQMYSRSGKMGIARNLFDEMPDRNYFSWNTMIEGY 103

Query: 409 SHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPG 468
            + G    +L+ F+ M E   +  +V    ++S  + AG +S    LFNAM         
Sbjct: 104 MNSGEKGTSLRFFDMMPERDGYSWNV----VVSGFAKAGELSVARRLFNAM--------- 150

Query: 469 PEHYVSMINLLGRA----GKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHA 524
           PE  V  +N L       G  +EA      L F  D      +L AC   E      +  
Sbjct: 151 PEKDVVTLNSLLHGYILNGYAEEALRLFKELNFSADAITLTTVLKACAELEALKCGKQIH 210

Query: 525 AKRLLELDPLNAPAHVVLCNIYAASG 550
           A+ L+     ++  +  L N+YA  G
Sbjct: 211 AQILIGGVECDSKMNSSLVNVYAKCG 236


>gi|15128441|dbj|BAB62625.1| P0402A09.8 [Oryza sativa Japonica Group]
 gi|20804430|dbj|BAB92127.1| P0455C04.2 [Oryza sativa Japonica Group]
          Length = 1122

 Score =  317 bits (812), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 201/652 (30%), Positives = 318/652 (48%), Gaps = 83/652 (12%)

Query: 25  GFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLA 84
           G +  A+A+F  MP +N+ S N +LS +  +G L  A+ LF   P RN  +WT M+   A
Sbjct: 57  GHLHRARAMFDQMPHKNIFSLNLILSAYSSSGDLPAAQHLFLSSPHRNATTWTIMMRAHA 116

Query: 85  DAGRVCEARKLFEEM------PERNVVSW----------------------------NSM 110
            AGR  +A  LF  M      P+R  V+                             N++
Sbjct: 117 AAGRTSDALSLFRAMLGEGVIPDRVTVTTVLNLPGCTVPSLHPFAIKFGLDTHVFVCNTL 176

Query: 111 VVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEER------ 164
           +    ++G L  AR+VF  M  K+ +++NAM+ G  +  +  +A+ LF  M         
Sbjct: 177 LDAYCKHGLLAAARRVFLEMHDKDAVTYNAMMMGCSKEGLHTQALQLFAAMRRAGIPATH 236

Query: 165 ---------------------------------NVVTWTSMISGYCRAGEVEEGYCLFRR 191
                                            NV    S++  Y +   +++   LF  
Sbjct: 237 FTFSSILTVAAGMAHLLLGHQVHALVLRSTSVLNVFVNNSLLDFYSKCDCLDDMRRLFDE 296

Query: 192 MPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMIN-----GYI 246
           MP ++ VS+  +I  +AWN      L LF EM+ +   G +  V    +M++       +
Sbjct: 297 MPERDNVSYNVIIAAYAWNQCAATVLRLFREMQKL---GFDRQVLPYATMLSVAGSLPDV 353

Query: 247 RFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISG 306
             G+   AQ +   +   D +   ++ID Y   G +  A   F N  ++ A++WTA+I+G
Sbjct: 354 HIGKQIHAQLVLLGLASEDLLG-NALIDMYSKCGMLDAAKSNFSNRSEKSAISWTALITG 412

Query: 307 LVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESD 366
            VQN    EA  LF +MR  G+ P  ATFS +  A+ + A I LGRQ+H  L+++  +S 
Sbjct: 413 YVQNGQHEEALQLFSDMRRAGLRPDRATFSSIIKASSSLAMIGLGRQLHSYLIRSGYKSS 472

Query: 367 LILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLE 426
           +   + L+ MYAKCG +D A   F  M  R+ +SWN+++  ++H+G A   +K+FE ML 
Sbjct: 473 VFSGSVLVDMYAKCGCLDEALRTFDEMPERNSISWNAVISAYAHYGEAKNAIKMFEGMLH 532

Query: 427 SGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIK 486
            G +P+SVTFL +L+ACSH GL     + F+ M   Y I P  EHY  +I+ LGR G   
Sbjct: 533 CGFNPDSVTFLSVLAACSHNGLADECMKYFHLMKHQYSISPWKEHYACVIDTLGRVGCFS 592

Query: 487 EAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIY 546
           + ++ ++ +PF+ D  IW ++L +C    GN E+A  AA +L  ++P +A  +V+L NIY
Sbjct: 593 QVQKMLVEMPFKADPIIWTSILHSCRI-HGNQELARVAADKLFGMEPTDATPYVILSNIY 651

Query: 547 AASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
           A +G+  +   ++  M  +GVRK  G SW+     I  F S D     + EI
Sbjct: 652 ARAGQWEDAACVKKIMRDRGVRKESGYSWVEIKQKIYSFASNDLTSPMIDEI 703



 Score = 62.0 bits (149), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 58/221 (26%), Positives = 103/221 (46%), Gaps = 21/221 (9%)

Query: 4   RNHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARR 63
           R+  KS V   +  +  Y+K G +DEA   F  MP+RN +S+NA++S +   G    A +
Sbjct: 466 RSGYKSSVFSGSVLVDMYAKCGCLDEALRTFDEMPERNSISWNAVISAYAHYGEAKNAIK 525

Query: 64  LFEEMPE----RNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVS-----WNSMVVGL 114
           +FE M       + V++ +++   +  G   E  K F  M  +  +S     +  ++  L
Sbjct: 526 MFEGMLHCGFNPDSVTFLSVLAACSHNGLADECMKYFHLMKHQYSISPWKEHYACVIDTL 585

Query: 115 IRNGELNEARKVFNSMPIK-NVISWNAM-----IAGYVECCMMGEAIVLFEEMEERNVVT 168
            R G  ++ +K+   MP K + I W ++     I G  E   +  A  LF  ME  +   
Sbjct: 586 GRVGCFSQVQKMLVEMPFKADPIIWTSILHSCRIHGNQELARVA-ADKLF-GMEPTDATP 643

Query: 169 WTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAW 209
           +  + + Y RAG+ E+  C+ + M  + V   +    G++W
Sbjct: 644 YVILSNIYARAGQWEDAACVKKIMRDRGVRKES----GYSW 680


>gi|357481283|ref|XP_003610927.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512262|gb|AES93885.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 802

 Score =  317 bits (811), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 182/559 (32%), Positives = 302/559 (54%), Gaps = 45/559 (8%)

Query: 59  SEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNG 118
           SE RR FEE+ E        + C      R+ EA      +P+ +   +++++   +R+ 
Sbjct: 30  SEHRR-FEEIIE--------LFC---QQNRLKEAVDYLHRIPQPSPRLYSTLIAACLRHR 77

Query: 119 ELNEARKVFNSMPIKNVISW----NAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMIS 174
           +L   ++V       N I      N +I  Y +C  + +A +LF+E+ ++++ +W +MIS
Sbjct: 78  KLELGKRVHAHTKASNFIPGIVISNRLIHMYAKCGSLVDAQMLFDEIPQKDLCSWNTMIS 137

Query: 175 GYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCN 234
           GY   G +E+   LF  MP ++  SW A+I G+   G++ E+L LF  M+   +  +NCN
Sbjct: 138 GYANVGRIEQARKLFDEMPHRDNFSWNAVISGYVSQGWYMEALDLFRMMQE--NESSNCN 195

Query: 235 VQSCNSM---------------INGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSV 279
           + + +S                I+GY+    LE            DE+ WT+++D Y   
Sbjct: 196 MFTLSSALAAAAAISSLRRGKEIHGYLIRSGLE-----------LDEVVWTALLDLYGKC 244

Query: 280 GQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLF 339
           G ++ A  +F  M D+D V+WT MI    ++    E   LF ++   GV P   TF+ + 
Sbjct: 245 GSLNEARGIFDQMADKDIVSWTTMIHRCFEDGRKKEGFSLFRDLMGSGVRPNEYTFAGVL 304

Query: 340 GAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLV 399
            A    A   +G+++H  + +   +      + L+ +Y+KCG  + A  +F+ M   DLV
Sbjct: 305 NACADLAAEQMGKEVHGYMTRVGYDPFSFAASALVHVYSKCGNTETARRVFNQMPRPDLV 364

Query: 400 SWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAM 459
           SW S+++G++ +G  +  L+ FES+L SGT P+ +TF+G+LSAC+HAGLV  G E F+++
Sbjct: 365 SWTSLIVGYAQNGQPDMALQFFESLLRSGTKPDEITFVGVLSACTHAGLVDIGLEYFHSV 424

Query: 460 FDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAE 519
            + + +    +HY  +I+LL R+G+ KEAE  +  +P +PD  +W +LLG C    GN E
Sbjct: 425 KEKHGLVHTADHYACVIDLLARSGRFKEAENIIDNMPMKPDKFLWASLLGGCRI-HGNIE 483

Query: 520 IAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRN 579
           +AE AAK L EL+P N   ++ L NIYA +G   EE K+R DM  +G+ K PG SW+   
Sbjct: 484 LAERAAKALFELEPENPATYITLSNIYANAGLWTEETKVRNDMDNRGIVKKPGKSWIEIK 543

Query: 580 GGIQMFLSGDKIPAQVAEI 598
             + +FL GD    ++++I
Sbjct: 544 RQVHVFLVGDTSHPKISDI 562



 Score =  145 bits (367), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 116/433 (26%), Positives = 196/433 (45%), Gaps = 19/433 (4%)

Query: 42  VVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPE 101
           +V  N ++  + + G L +A+ LF+E+P++++ SW  MI G A+ GR+ +ARKLF+EMP 
Sbjct: 98  IVISNRLIHMYAKCGSLVDAQMLFDEIPQKDLCSWNTMISGYANVGRIEQARKLFDEMPH 157

Query: 102 RNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMM-------GEA 154
           R+  SWN+++ G +  G   EA  +F  M      + N                   G+ 
Sbjct: 158 RDNFSWNAVISGYVSQGWYMEALDLFRMMQENESSNCNMFTLSSALAAAAAISSLRRGKE 217

Query: 155 I--VLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGF 212
           I   L     E + V WT+++  Y + G + E   +F +M  K++VSWT MI     +G 
Sbjct: 218 IHGYLIRSGLELDEVVWTALLDLYGKCGSLNEARGIFDQMADKDIVSWTTMIHRCFEDGR 277

Query: 213 HKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNL--FDTVPVRDEISW- 269
            KE   LF ++ G   +G   N  +   ++N        +  + +  + T    D  S+ 
Sbjct: 278 KKEGFSLFRDLMG---SGVRPNEYTFAGVLNACADLAAEQMGKEVHGYMTRVGYDPFSFA 334

Query: 270 -TSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGV 328
            ++++  Y   G    A  +F+ MP  D V+WT++I G  QN     A   F  +   G 
Sbjct: 335 ASALVHVYSKCGNTETARRVFNQMPRPDLVSWTSLIVGYAQNGQPDMALQFFESLLRSGT 394

Query: 329 PPLNATFSVLFGAAGATANIDLGRQ-IHCVLMKTESESDLILENCLISMYAKCGVIDNAY 387
            P   TF  +  A      +D+G +  H V  K           C+I + A+ G    A 
Sbjct: 395 KPDEITFVGVLSACTHAGLVDIGLEYFHSVKEKHGLVHTADHYACVIDLLARSGRFKEAE 454

Query: 388 NIFSNM-VSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHA 446
           NI  NM +  D   W S++ G   HG      +  +++ E     N  T++ + +  ++A
Sbjct: 455 NIIDNMPMKPDKFLWASLLGGCRIHGNIELAERAAKALFELEPE-NPATYITLSNIYANA 513

Query: 447 GLVSRGWELFNAM 459
           GL +   ++ N M
Sbjct: 514 GLWTEETKVRNDM 526



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 101/450 (22%), Positives = 181/450 (40%), Gaps = 104/450 (23%)

Query: 7   PKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFE 66
           P+  +    + I+ Y+  G I++A+ LF  MP R+  S+NA++SG++  G   EA  LF 
Sbjct: 125 PQKDLCSWNTMISGYANVGRIEQARKLFDEMPHRDNFSWNAVISGYVSQGWYMEALDLFR 184

Query: 67  EMPER----------------------------------------NVVSWTAMICGLADA 86
            M E                                         + V WTA++      
Sbjct: 185 MMQENESSNCNMFTLSSALAAAAAISSLRRGKEIHGYLIRSGLELDEVVWTALLDLYGKC 244

Query: 87  GRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYV 146
           G + EAR +F++M ++++VSW +M+     +G   E   +F  +    V       AG +
Sbjct: 245 GSLNEARGIFDQMADKDIVSWTTMIHRCFEDGRKKEGFSLFRDLMGSGVRPNEYTFAGVL 304

Query: 147 ECC------MMGEAIVLFEEMEERNVVTW--TSMISGYCRAGEVEEGYCLFRRMPRKNVV 198
             C       MG+ +  +      +  ++  ++++  Y + G  E    +F +MPR ++V
Sbjct: 305 NACADLAAEQMGKEVHGYMTRVGYDPFSFAASALVHVYSKCGNTETARRVFNQMPRPDLV 364

Query: 199 SWTAMIGGFAWNGFHKESLLLFIEM---------------------KGICDNG------- 230
           SWT++I G+A NG    +L  F  +                      G+ D G       
Sbjct: 365 SWTSLIVGYAQNGQPDMALQFFESLLRSGTKPDEITFVGVLSACTHAGLVDIGLEYFHSV 424

Query: 231 -------NNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVR-DEISWTSMIDGYLSVGQV 282
                  +  +  +C  +I+   R GR +EA+N+ D +P++ D+  W S++ G    G +
Sbjct: 425 KEKHGLVHTADHYAC--VIDLLARSGRFKEAENIIDNMPMKPDKFLWASLLGGCRIHGNI 482

Query: 283 S----NAYYLFHNMPDRDAVAWTAMISGLVQNE-LFVEATYLFMEMRAHGVPPLNATFSV 337
                 A  LF   P+  A   T  +S +  N  L+ E T +  +M   G+         
Sbjct: 483 ELAERAAKALFELEPENPATYIT--LSNIYANAGLWTEETKVRNDMDNRGIV-------- 532

Query: 338 LFGAAGATANIDLGRQIHCVLMKTESESDL 367
                   + I++ RQ+H  L+   S   +
Sbjct: 533 ---KKPGKSWIEIKRQVHVFLVGDTSHPKI 559


>gi|15222566|ref|NP_173907.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75172213|sp|Q9FRI5.1|PPR57_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g25360
 gi|11067273|gb|AAG28801.1|AC079374_4 hypothetical protein [Arabidopsis thaliana]
 gi|332192491|gb|AEE30612.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 790

 Score =  316 bits (810), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 191/623 (30%), Positives = 320/623 (51%), Gaps = 48/623 (7%)

Query: 14  LTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMP--ER 71
           L   I  Y K   ++ A+ LF  + + + ++   M+SG+  +G ++ AR +FE+ P   R
Sbjct: 52  LNRLIDVYCKSSELNYARQLFDEISEPDKIARTTMVSGYCASGDITLARGVFEKAPVCMR 111

Query: 72  NVVSWTAMICGLADAGRVCEARKLFEEMPERNV----VSWNSMVVGLIRNGELNEARKVF 127
           + V + AMI G +       A  LF +M          ++ S++ GL    +  +    F
Sbjct: 112 DTVMYNAMITGFSHNNDGYSAINLFCKMKHEGFKPDNFTFASVLAGLALVADDEKQCVQF 171

Query: 128 NSMPIKNVISW-----NAMIAGYVECC----MMGEAIVLFEEMEERNVVTWTSMISGYCR 178
           ++  +K+   +     NA+++ Y +C     ++  A  +F+E+ E++  +WT+M++GY +
Sbjct: 172 HAAALKSGAGYITSVSNALVSVYSKCASSPSLLHSARKVFDEILEKDERSWTTMMTGYVK 231

Query: 179 AGEVEEGYCLFRRMPRK-NVVSWTAMIGGFAWNGFHKESLLLFIEM-------------- 223
            G  + G  L   M     +V++ AMI G+   GF++E+L +   M              
Sbjct: 232 NGYFDLGEELLEGMDDNMKLVAYNAMISGYVNRGFYQEALEMVRRMVSSGIELDEFTYPS 291

Query: 224 -------KGICDNGNNCNVQSC----------NSMINGYIRFGRLEEAQNLFDTVPVRDE 266
                   G+   G   +              NS+++ Y + G+ +EA+ +F+ +P +D 
Sbjct: 292 VIRACATAGLLQLGKQVHAYVLRREDFSFHFDNSLVSLYYKCGKFDEARAIFEKMPAKDL 351

Query: 267 ISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAH 326
           +SW +++ GY+S G +  A  +F  M +++ ++W  MISGL +N    E   LF  M+  
Sbjct: 352 VSWNALLSGYVSSGHIGEAKLIFKEMKEKNILSWMIMISGLAENGFGEEGLKLFSCMKRE 411

Query: 327 GVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNA 386
           G  P +  FS    +         G+Q H  L+K   +S L   N LI+MYAKCGV++ A
Sbjct: 412 GFEPCDYAFSGAIKSCAVLGAYCNGQQYHAQLLKIGFDSSLSAGNALITMYAKCGVVEEA 471

Query: 387 YNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHA 446
             +F  M   D VSWN+++     HG   E + V+E ML+ G  P+ +T L +L+ACSHA
Sbjct: 472 RQVFRTMPCLDSVSWNALIAALGQHGHGAEAVDVYEEMLKKGIRPDRITLLTVLTACSHA 531

Query: 447 GLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGA 506
           GLV +G + F++M  VY+I PG +HY  +I+LL R+GK  +AE  +  LPF+P   IW A
Sbjct: 532 GLVDQGRKYFDSMETVYRIPPGADHYARLIDLLCRSGKFSDAESVIESLPFKPTAEIWEA 591

Query: 507 LLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKG 566
           LL  C    GN E+   AA +L  L P +   +++L N++AA+G+  E  ++R  M  +G
Sbjct: 592 LLSGCR-VHGNMELGIIAADKLFGLIPEHDGTYMLLSNMHAATGQWEEVARVRKLMRDRG 650

Query: 567 VRKVPGCSWLMRNGGIQMFLSGD 589
           V+K   CSW+     +  FL  D
Sbjct: 651 VKKEVACSWIEMETQVHTFLVDD 673



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 52/198 (26%), Positives = 101/198 (51%), Gaps = 12/198 (6%)

Query: 7   PKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFE 66
           P   +V   + ++ Y   G I EAK +F+ M ++N++S+  M+SG  +NG   E  +LF 
Sbjct: 347 PAKDLVSWNALLSGYVSSGHIGEAKLIFKEMKEKNILSWMIMISGLAENGFGEEGLKLFS 406

Query: 67  EMPERNV----VSWTAMICGLADAGRVCEARKLFEEMP----ERNVVSWNSMVVGLIRNG 118
            M          +++  I   A  G  C  ++   ++     + ++ + N+++    + G
Sbjct: 407 CMKREGFEPCDYAFSGAIKSCAVLGAYCNGQQYHAQLLKIGFDSSLSAGNALITMYAKCG 466

Query: 119 ELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNV----VTWTSMIS 174
            + EAR+VF +MP  + +SWNA+IA   +     EA+ ++EEM ++ +    +T  ++++
Sbjct: 467 VVEEARQVFRTMPCLDSVSWNALIAALGQHGHGAEAVDVYEEMLKKGIRPDRITLLTVLT 526

Query: 175 GYCRAGEVEEGYCLFRRM 192
               AG V++G   F  M
Sbjct: 527 ACSHAGLVDQGRKYFDSM 544


>gi|414589997|tpg|DAA40568.1| TPA: hypothetical protein ZEAMMB73_314346 [Zea mays]
          Length = 627

 Score =  316 bits (810), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 186/590 (31%), Positives = 302/590 (51%), Gaps = 73/590 (12%)

Query: 73  VVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPI 132
           +V+ T+ I  L  AG    AR +F+ MP R+ V+WN+M+   +R G+  +A  +F+  P 
Sbjct: 12  LVAATSRIASLGRAGDAASARAMFDAMPRRDAVAWNAMLTAYVRAGQPRDALTLFSRAPA 71

Query: 133 KNVISW-----------------------------------NAMIAGYVECCMMGEAIVL 157
            +  S                                    N ++  Y +C    +A   
Sbjct: 72  PDAFSLTAALSAAAALRSPVAGAQLHARLIRAGLRALLPVGNTLVDMYAKCARADDAARA 131

Query: 158 FEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESL 217
           F EM ERN ++W S++  Y  +  +     LF +MP +N V+W  ++ G++ +G   + L
Sbjct: 132 FGEMRERNALSWCSLLHAYVVSDHLMLAQELFDQMPNRNNVAWNTLLMGYSRSGNANQCL 191

Query: 218 LLFIEMKG---ICDNGNNC---------------------NVQS--------CNSMINGY 245
           LLF +M+     CD    C                      VQS         NS+I+ Y
Sbjct: 192 LLFNKMRAEGMACDGATLCILADACTELAHPSAGSAIHKVAVQSGWSAMAEVSNSLISLY 251

Query: 246 IRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMIS 305
            +F  L++A  +F+++ VR  +SW S+ID Y+ +G V  A  LF  +P+ + ++WTAMI 
Sbjct: 252 SKFSLLDDAVRIFESMEVRTIVSWNSLIDSYMKLGCVEKATSLFRRVPETNVISWTAMIG 311

Query: 306 GLVQNELFVEATYLFMEMRAH-GVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESE 364
           GL +N    EA  LF+ M AH  + P + TF  +  A    A++  GR +HC   ++   
Sbjct: 312 GLARNGCADEALALFIVMLAHEHIHPDDFTFGSVLHACATAASLASGRMVHCRAFRSGFA 371

Query: 365 SDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESM 424
           + L + N L+ MYAKCG ++   N+F  +V++DLVSWN+M+ GF+ +G ANE L V++SM
Sbjct: 372 AYLYVANSLMDMYAKCGDVEGGTNVFGAIVNKDLVSWNTMLFGFAINGWANEALVVYDSM 431

Query: 425 LESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGK 484
                 P+ VTF G+L+AC+H+GL+  G   F +M  V+ IQP PEH   ++++  R+G 
Sbjct: 432 KSHEVCPDEVTFAGLLTACNHSGLLEHGESFFESMVSVHGIQPKPEHLSCILDMYARSGN 491

Query: 485 IKEAEEFVLRLPFEP----DHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHV 540
           I +A E +L L  E     +  I  ALL AC     N  +A  A + ++         +V
Sbjct: 492 ITKAME-MLDLYSETIRAHNSDIREALLSACSLEHLNFRVARKAMEDMVATKSAGDVGYV 550

Query: 541 VLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDK 590
           +L N++ A+G+  +  ++R+ M   G++K PGCSW+   G +++F SG +
Sbjct: 551 MLSNLFCAAGQWNQAEQVRIAMAEHGIKKTPGCSWIEVQGAVKVFASGAQ 600



 Score = 48.9 bits (115), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 40/155 (25%), Positives = 67/155 (43%), Gaps = 9/155 (5%)

Query: 4   RNHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVV-----SYNAMLSGFLQNGRL 58
           R  P++ V+  T+ I   ++ G  DEA ALF +M     +     ++ ++L        L
Sbjct: 296 RRVPETNVISWTAMIGGLARNGCADEALALFIVMLAHEHIHPDDFTFGSVLHACATAASL 355

Query: 59  SEAR----RLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGL 114
           +  R    R F       +    +++   A  G V     +F  +  +++VSWN+M+ G 
Sbjct: 356 ASGRMVHCRAFRSGFAAYLYVANSLMDMYAKCGDVEGGTNVFGAIVNKDLVSWNTMLFGF 415

Query: 115 IRNGELNEARKVFNSMPIKNVISWNAMIAGYVECC 149
             NG  NEA  V++SM    V       AG +  C
Sbjct: 416 AINGWANEALVVYDSMKSHEVCPDEVTFAGLLTAC 450


>gi|225432742|ref|XP_002279134.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22690
           [Vitis vinifera]
          Length = 836

 Score =  316 bits (809), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 190/576 (32%), Positives = 311/576 (53%), Gaps = 21/576 (3%)

Query: 39  QRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEE 98
           + +V   N ++  + + G +    ++FE M ERNVVSWT++ICG A   R  EA  LF E
Sbjct: 163 EEDVFIQNCLIHFYAECGHMDHGHKVFEGMSERNVVSWTSLICGYARGDRPKEAVSLFFE 222

Query: 99  MPERNV----VSWNSMVVGLIRNGELNEARKV---FNSMPIK-NVISWNAMIAGYVECCM 150
           M E  +    V+   ++    +  +L+   +V      + +K N +  NA++  Y++C  
Sbjct: 223 MVEAGIRPSSVTMVCVISACAKLRDLDMGERVCAYIGELGLKLNKVMVNALVDMYMKCGA 282

Query: 151 MGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRM----PRKNVVSWTAMIGG 206
           +  A  LF+E  +RN+V + +++S Y R G   E   +   M    PR + V+  + I  
Sbjct: 283 IDAAKRLFDECVDRNLVLYNTILSNYARQGLAREALAILDEMLQQGPRPDRVTMLSAISA 342

Query: 207 FAW--NGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVR 264
            A   + F+ +    ++   G+    +  NV     +I+ Y++ G+ E A  +FD +  +
Sbjct: 343 SAQLVDLFYGKVCHGYVIRNGLEGWDSIGNV-----IIDMYMKCGKPEMACRVFDLMSNK 397

Query: 265 DEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMR 324
             +SW S+  G++  G V +A+ +F+ +P+R+AV W  MISGLVQ  LF +A  LF EM+
Sbjct: 398 TVVSWNSLTAGFIRNGDVESAWEVFNQIPERNAVFWNTMISGLVQKSLFEDAIELFREMQ 457

Query: 325 AHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVID 384
             G+     T   +  A G     +L + +H  + K     D+ L   L+ M+A+CG   
Sbjct: 458 GEGIKADRVTMMGIASACGYLGAPELAKWVHTYIEKNGIPCDMRLNTALVDMFARCGDPQ 517

Query: 385 NAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACS 444
           +A  +F+ M  RD+ +W + +   +  G       +F  ML  G  P+ V F+ +L+ACS
Sbjct: 518 SAMQVFNKMTERDVSAWTAAIGTMAMEGNGEGATGLFNQMLIQGVKPDVVLFVQVLTACS 577

Query: 445 HAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIW 504
           H G V +G  +F+ M D + I P  EHY  M++LLGRAG ++EA + +  +P EP+  +W
Sbjct: 578 HGGQVEQGLHIFSLMED-HGISPQIEHYGCMVDLLGRAGLLREAFDLIKSMPMEPNDVVW 636

Query: 505 GALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGL 564
           G+LL AC     N E+A +AA+R+ EL P  A  HV+L NIYA++G+  +  ++R+++  
Sbjct: 637 GSLLAACRV-HKNVEMATYAAERINELAPQRAGVHVLLSNIYASAGKWTDVARVRLNLRE 695

Query: 565 KGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEILL 600
           KGVRKVPG S +  NG I  F SGD+   ++  I L
Sbjct: 696 KGVRKVPGSSSVQVNGVIHEFTSGDESHPEMTHIAL 731



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 110/473 (23%), Positives = 200/473 (42%), Gaps = 84/473 (17%)

Query: 21  YSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNV-VSWTAM 79
           Y++ G +D    +F+ M +RNVVS+ +++ G+ +  R  EA  LF EM E  +  S   M
Sbjct: 176 YAECGHMDHGHKVFEGMSERNVVSWTSLICGYARGDRPKEAVSLFFEMVEAGIRPSSVTM 235

Query: 80  ICGLA--------DAG-RVC-----------------------------EARKLFEEMPE 101
           +C ++        D G RVC                              A++LF+E  +
Sbjct: 236 VCVISACAKLRDLDMGERVCAYIGELGLKLNKVMVNALVDMYMKCGAIDAAKRLFDECVD 295

Query: 102 RNVVSWNSMVVGLIRNGELNEARKVFNSM------------------------------- 130
           RN+V +N+++    R G   EA  + + M                               
Sbjct: 296 RNLVLYNTILSNYARQGLAREALAILDEMLQQGPRPDRVTMLSAISASAQLVDLFYGKVC 355

Query: 131 ---PIKNVIS-W----NAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEV 182
               I+N +  W    N +I  Y++C     A  +F+ M  + VV+W S+ +G+ R G+V
Sbjct: 356 HGYVIRNGLEGWDSIGNVIIDMYMKCGKPEMACRVFDLMSNKTVVSWNSLTAGFIRNGDV 415

Query: 183 EEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMI 242
           E  + +F ++P +N V W  MI G       ++++ LF EM+G     +   +    S  
Sbjct: 416 ESAWEVFNQIPERNAVFWNTMISGLVQKSLFEDAIELFREMQGEGIKADRVTMMGIASAC 475

Query: 243 NGYIRFGRLEEAQNLF---DTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVA 299
            GY+    L +  + +   + +P    ++ T+++D +   G   +A  +F+ M +RD  A
Sbjct: 476 -GYLGAPELAKWVHTYIEKNGIPCDMRLN-TALVDMFARCGDPQSAMQVFNKMTERDVSA 533

Query: 300 WTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLM 359
           WTA I  +        AT LF +M   GV P    F  +  A      ++ G  I  ++ 
Sbjct: 534 WTAAIGTMAMEGNGEGATGLFNQMLIQGVKPDVVLFVQVLTACSHGGQVEQGLHIFSLME 593

Query: 360 KTESESDLILENCLISMYAKCGVIDNAYNIFSNM-VSRDLVSWNSMVMGFSHH 411
                  +    C++ +  + G++  A+++  +M +  + V W S++     H
Sbjct: 594 DHGISPQIEHYGCMVDLLGRAGLLREAFDLIKSMPMEPNDVVWGSLLAACRVH 646



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 105/419 (25%), Positives = 179/419 (42%), Gaps = 90/419 (21%)

Query: 12  VHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEM--- 68
           V + + +  Y K G ID AK LF     RN+V YN +LS + + G   EA  + +EM   
Sbjct: 268 VMVNALVDMYMKCGAIDAAKRLFDECVDRNLVLYNTILSNYARQGLAREALAILDEMLQQ 327

Query: 69  ---PER----NVVSWTAMICGLADAGRVCE------------------------------ 91
              P+R    + +S +A +  L   G+VC                               
Sbjct: 328 GPRPDRVTMLSAISASAQLVDLF-YGKVCHGYVIRNGLEGWDSIGNVIIDMYMKCGKPEM 386

Query: 92  ARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMM 151
           A ++F+ M  + VVSWNS+  G IRNG++  A +VFN +P +N + WN MI+G V+  + 
Sbjct: 387 ACRVFDLMSNKTVVSWNSLTAGFIRNGDVESAWEVFNQIPERNAVFWNTMISGLVQKSLF 446

Query: 152 GEAIVLFEEME----------------------------------ERNVVTW-----TSM 172
            +AI LF EM+                                  E+N +       T++
Sbjct: 447 EDAIELFREMQGEGIKADRVTMMGIASACGYLGAPELAKWVHTYIEKNGIPCDMRLNTAL 506

Query: 173 ISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNN 232
           +  + R G+ +    +F +M  ++V +WTA IG  A  G  + +  LF +M      G  
Sbjct: 507 VDMFARCGDPQSAMQVFNKMTERDVSAWTAAIGTMAMEGNGEGATGLFNQM---LIQGVK 563

Query: 233 CNVQSCNSMINGYIRFGRLEEAQNLFDTVP---VRDEIS-WTSMIDGYLSVGQVSNAYYL 288
            +V     ++      G++E+  ++F  +    +  +I  +  M+D     G +  A+ L
Sbjct: 564 PDVVLFVQVLTACSHGGQVEQGLHIFSLMEDHGISPQIEHYGCMVDLLGRAGLLREAFDL 623

Query: 289 FHNMP-DRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATA 346
             +MP + + V W ++++    ++    ATY     R + + P  A   VL     A+A
Sbjct: 624 IKSMPMEPNDVVWGSLLAACRVHKNVEMATY--AAERINELAPQRAGVHVLLSNIYASA 680



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 54/169 (31%), Positives = 91/169 (53%), Gaps = 2/169 (1%)

Query: 278 SVGQVSNAYYLF-HNMPDRDAV-AWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATF 335
           S+     A+ LF  ++   DA+    ++I G     L  EA  L++ M   GV P + TF
Sbjct: 75  SLDYARKAFELFKEDVRSDDALFMLNSLIRGYSSAGLGREAILLYVRMLVLGVTPNHYTF 134

Query: 336 SVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVS 395
             +       A    G Q+H  ++K   E D+ ++NCLI  YA+CG +D+ + +F  M  
Sbjct: 135 PFVLSGCTKIAAFCEGIQVHGSVVKMGLEEDVFIQNCLIHFYAECGHMDHGHKVFEGMSE 194

Query: 396 RDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACS 444
           R++VSW S++ G++      E + +F  M+E+G  P+SVT + ++SAC+
Sbjct: 195 RNVVSWTSLICGYARGDRPKEAVSLFFEMVEAGIRPSSVTMVCVISACA 243



 Score = 62.4 bits (150), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 66/277 (23%), Positives = 118/277 (42%), Gaps = 49/277 (17%)

Query: 11  VVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPE 70
           VV   S    + + G ++ A  +F  +P+RN V +N M+SG +Q     +A  LF EM  
Sbjct: 399 VVSWNSLTAGFIRNGDVESAWEVFNQIPERNAVFWNTMISGLVQKSLFEDAIELFREMQG 458

Query: 71  RNVVSWTAMICGLADAGRVCEARKL---FEEMPERNVVSWN-----SMVVGLIRNGELNE 122
             + +    + G+A A     A +L        E+N +  +     ++V    R G+   
Sbjct: 459 EGIKADRVTMMGIASACGYLGAPELAKWVHTYIEKNGIPCDMRLNTALVDMFARCGDPQS 518

Query: 123 ARKVFNSMPIKNVISWNAMIAGYVECCMMGE-AIVLFEEM----EERNVVTWTSMISGYC 177
           A +VFN M  ++V +W A I G +     GE A  LF +M     + +VV +  +++   
Sbjct: 519 AMQVFNKMTERDVSAWTAAI-GTMAMEGNGEGATGLFNQMLIQGVKPDVVLFVQVLTACS 577

Query: 178 RAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQS 237
             G+VE+G  +F  M                                   D+G +  ++ 
Sbjct: 578 HGGQVEQGLHIFSLME----------------------------------DHGISPQIEH 603

Query: 238 CNSMINGYIRFGRLEEAQNLFDTVPVR-DEISWTSMI 273
              M++   R G L EA +L  ++P+  +++ W S++
Sbjct: 604 YGCMVDLLGRAGLLREAFDLIKSMPMEPNDVVWGSLL 640



 Score = 42.4 bits (98), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 29/116 (25%), Positives = 50/116 (43%), Gaps = 8/116 (6%)

Query: 352 RQIHCVLMKT------ESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRD--LVSWNS 403
           +Q+HC + K        + + L+     I+          A+ +F   V  D  L   NS
Sbjct: 42  KQLHCQITKNGLDQIPSTLTKLVNAGAEIASPESLDYARKAFELFKEDVRSDDALFMLNS 101

Query: 404 MVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAM 459
           ++ G+S  GL  E + ++  ML  G  PN  TF  +LS C+       G ++  ++
Sbjct: 102 LIRGYSSAGLGREAILLYVRMLVLGVTPNHYTFPFVLSGCTKIAAFCEGIQVHGSV 157


>gi|297839569|ref|XP_002887666.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297333507|gb|EFH63925.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 675

 Score =  315 bits (808), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 191/634 (30%), Positives = 309/634 (48%), Gaps = 68/634 (10%)

Query: 9   SLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEM 68
           S+V+     +  YS+ G +  A+ LF  MP+RN  S+N M+ G++ +G    + R F+ M
Sbjct: 40  SIVIVANHLLQIYSRSGKMGIARNLFDEMPERNYFSWNTMIEGYMNSGDKGTSLRFFDMM 99

Query: 69  PERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFN 128
           PER+  SW  +I G A AG +  AR+LF+ MPE++VV+ NS++ G I NG   EA ++F 
Sbjct: 100 PERDGYSWNVVISGFAKAGELSVARRLFDAMPEKDVVTLNSLLHGYILNGYSEEALRLFK 159

Query: 129 SMPIK----------------------NVISWNAMIAG--------------YVECCMMG 152
            +                           I    +I G              Y +C  + 
Sbjct: 160 ELKFSADAITLTTVLKACAELEALKRGKQIHAQILIGGVECDSKMNSSLVNVYAKCGDLR 219

Query: 153 EAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGF 212
            A  + E++ E +  + +++ISGY   G V E   LF R   + V+ W +MI G+  N  
Sbjct: 220 MASYMLEQIGEPDDHSLSTLISGYANCGRVNESRRLFDRKSNRCVILWNSMISGYIANNM 279

Query: 213 HKESLLLFIEMK--------------------GICDNGNNCNVQSC-----------NSM 241
             E+L+LF EM+                    G  + G   +  +C           +++
Sbjct: 280 KFEALVLFNEMRNETWEDSRTLAAVINACIGLGFLETGKQMHCHACKFGLVDDIVVASTL 339

Query: 242 INGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWT 301
           ++ Y + G   EA  LF  V   D I   SMI  Y S G++ +A  +F  + ++  ++W 
Sbjct: 340 LDMYSKCGSPMEACKLFSEVESYDTILLNSMIKVYFSCGRIDDAKRVFERIENKSLISWN 399

Query: 302 AMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKT 361
           +M +G  QN   VE    F +M    +P    + S +  A  + +++ LG Q+       
Sbjct: 400 SMTNGFSQNGCPVETLEYFSQMHKLDLPTDEVSLSSVISACASISSLGLGEQVFARATIV 459

Query: 362 ESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVF 421
             +SD I+ + LI +Y KCG ++N   +F  MV  D V WNSM+ G++ +G   E + +F
Sbjct: 460 GLDSDQIVSSSLIDLYCKCGSVENGRRVFDTMVKSDEVPWNSMISGYATNGHGFEAIDLF 519

Query: 422 ESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGR 481
           + M  +G  P  +TF+ +L+AC++ GLV  G  LF AM   +   P  EH+  M++LL R
Sbjct: 520 KKMSIAGIRPTQITFMVVLTACNYCGLVEEGRLLFEAMKLDHGFVPDKEHFSCMVDLLAR 579

Query: 482 AGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVV 541
           AG ++EA + V  +PF+ D  +W ++L  C    G   + +  A++++EL+P N+ A+V 
Sbjct: 580 AGYVEEAIDLVEEMPFDADASMWSSVLRGC-VANGYKAMGKKVAEKIIELEPENSVAYVQ 638

Query: 542 LCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSW 575
           L  I+A SG       +R  M    V K PG SW
Sbjct: 639 LSAIFATSGDWESSALVRKLMRENNVSKNPGSSW 672



 Score =  197 bits (501), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 142/520 (27%), Positives = 245/520 (47%), Gaps = 80/520 (15%)

Query: 21  YSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMI 80
           + K+GFI              V+  N +L  + ++G++  AR LF+EMPERN  SW  MI
Sbjct: 32  FLKKGFISSI-----------VIVANHLLQIYSRSGKMGIARNLFDEMPERNYFSWNTMI 80

Query: 81  CGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNA 140
            G  ++G    + + F+ MPER+  SWN ++ G  + GEL+ AR++F++MP K+V++ N+
Sbjct: 81  EGYMNSGDKGTSLRFFDMMPERDGYSWNVVISGFAKAGELSVARRLFDAMPEKDVVTLNS 140

Query: 141 MIAGYVECCMMGEAIVLFEEME-ERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVS 199
           ++ GY+      EA+ LF+E++   + +T T+++       E+E        + R   + 
Sbjct: 141 LLHGYILNGYSEEALRLFKELKFSADAITLTTVLKA---CAELEA-------LKRGKQIH 190

Query: 200 WTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFD 259
              +IGG                    CD+  N      +S++N Y + G L  A  + +
Sbjct: 191 AQILIGGVE------------------CDSKMN------SSLVNVYAKCGDLRMASYMLE 226

Query: 260 TVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYL 319
            +   D+ S +++I GY + G+V+ +  LF    +R  + W +MISG + N +  EA  L
Sbjct: 227 QIGEPDDHSLSTLISGYANCGRVNESRRLFDRKSNRCVILWNSMISGYIANNMKFEALVL 286

Query: 320 FMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMK------------------- 360
           F EMR       + T + +  A      ++ G+Q+HC   K                   
Sbjct: 287 FNEMRNETWED-SRTLAAVINACIGLGFLETGKQMHCHACKFGLVDDIVVASTLLDMYSK 345

Query: 361 -----------TESES-DLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGF 408
                      +E ES D IL N +I +Y  CG ID+A  +F  + ++ L+SWNSM  GF
Sbjct: 346 CGSPMEACKLFSEVESYDTILLNSMIKVYFSCGRIDDAKRVFERIENKSLISWNSMTNGF 405

Query: 409 SHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPG 468
           S +G   ETL+ F  M +     + V+   ++SAC+    +  G ++F A   +  +   
Sbjct: 406 SQNGCPVETLEYFSQMHKLDLPTDEVSLSSVISACASISSLGLGEQVF-ARATIVGLDSD 464

Query: 469 PEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALL 508
                S+I+L  + G ++     V     + D   W +++
Sbjct: 465 QIVSSSLIDLYCKCGSVENGRR-VFDTMVKSDEVPWNSMI 503


>gi|356557876|ref|XP_003547236.1| PREDICTED: pentatricopeptide repeat-containing protein At5g19020,
           mitochondrial-like [Glycine max]
          Length = 912

 Score =  315 bits (808), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 205/608 (33%), Positives = 314/608 (51%), Gaps = 49/608 (8%)

Query: 16  SSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVS 75
           S I  Y+KRG I +A+ LF   P  N +S N M+ G+ + G+L  AR+LF+ MP++  VS
Sbjct: 309 SLINMYAKRGSIKDAQLLFDACPTLNPISCNIMVCGYAKAGQLDNARKLFDIMPDKGCVS 368

Query: 76  WTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRN----GELNEARKVFNSMP 131
           +T MI GL       EA ++F++M    VV  +  +V +I      GE+   R + +++ 
Sbjct: 369 YTTMIMGLVQNECFREALEVFKDMRSDGVVPNDLTLVNVIYACSHFGEILNCRMI-HAIA 427

Query: 132 IK------NVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEG 185
           IK       ++S N M A Y  C  +GEA  LF+ M E N+V+W  M++GY +AG V+  
Sbjct: 428 IKLFVEGLVLVSTNLMRA-YCLCSGVGEARRLFDRMPEVNLVSWNVMLNGYAKAGLVDMA 486

Query: 186 YCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEM--KGICDN-------------- 229
             LF R+P K+V+SW  MI G+       E+L+++  M   G+  N              
Sbjct: 487 RELFERVPDKDVISWGTMIDGYILMNRLHEALVMYRAMLRSGLALNEILVVNLVSACGRL 546

Query: 230 ----------------GNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEI-SWTSM 272
                           G +C      ++I+ Y   G ++ A   F+ V  +D + SW ++
Sbjct: 547 NAIGDGWQLHGMVVKKGFDCYNFIQTTIIHFYAACGMMDLACLQFE-VGAKDHLESWNAL 605

Query: 273 IDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLN 332
           + G++    V  A  +F +MP+RD  +W+ MISG  Q +    A  LF +M A G+ P  
Sbjct: 606 VSGFIKNRMVDQARKIFDDMPERDVFSWSTMISGYAQTDQSRIALELFHKMVASGIKPNE 665

Query: 333 ATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSN 392
            T   +F A      +  GR  H  +       +  L   LI MYAKCG I++A   F+ 
Sbjct: 666 VTMVSVFSAIATLGTLKEGRWAHEYICNESIPLNDNLRAALIDMYAKCGSINSALQFFNQ 725

Query: 393 MVSR--DLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVS 450
           +  +   +  WN+++ G + HG A+  L VF  M      PN +TF+G+LSAC HAGLV 
Sbjct: 726 IRDKTFSVSPWNAIICGLASHGHASMCLDVFSDMQRYNIKPNPITFIGVLSACCHAGLVE 785

Query: 451 RGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGA 510
            G  +F  M   Y ++P  +HY  M++LLGRAG ++EAEE +  +P + D  IWG LL A
Sbjct: 786 PGRRIFRIMKSAYNVEPDIKHYGCMVDLLGRAGLLEEAEEMIRSMPMKADIVIWGTLLAA 845

Query: 511 CGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKV 570
           C    G+  I E AA+ L  L P +    V+L NIYA +GR  +   +R  +  + + ++
Sbjct: 846 CR-THGDVNIGERAAESLAGLAPSHGGGKVLLSNIYADAGRWEDVSLVRRAIQNQRMERM 904

Query: 571 PGCSWLMR 578
           PGCS ++R
Sbjct: 905 PGCSGVIR 912



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 112/431 (25%), Positives = 209/431 (48%), Gaps = 15/431 (3%)

Query: 8   KSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEE 67
           + LV+  T+ +  Y     + EA+ LF  MP+ N+VS+N ML+G+ + G +  AR LFE 
Sbjct: 433 EGLVLVSTNLMRAYCLCSGVGEARRLFDRMPEVNLVSWNVMLNGYAKAGLVDMARELFER 492

Query: 68  MPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRN-GELN---EA 123
           +P+++V+SW  MI G     R+ EA  ++  M    +     +VV L+   G LN   + 
Sbjct: 493 VPDKDVISWGTMIDGYILMNRLHEALVMYRAMLRSGLALNEILVVNLVSACGRLNAIGDG 552

Query: 124 RKVFNSMPIKNVISWN----AMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRA 179
            ++   +  K    +N     +I  Y  C MM  A + FE   + ++ +W +++SG+ + 
Sbjct: 553 WQLHGMVVKKGFDCYNFIQTTIIHFYAACGMMDLACLQFEVGAKDHLESWNALVSGFIKN 612

Query: 180 GEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCN 239
             V++   +F  MP ++V SW+ MI G+A     + +L LF +M       N   + S  
Sbjct: 613 RMVDQARKIFDDMPERDVFSWSTMISGYAQTDQSRIALELFHKMVASGIKPNEVTMVSVF 672

Query: 240 SMIN--GYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDR-- 295
           S I   G ++ GR        +++P+ D +   ++ID Y   G +++A   F+ + D+  
Sbjct: 673 SAIATLGTLKEGRWAHEYICNESIPLNDNLR-AALIDMYAKCGSINSALQFFNQIRDKTF 731

Query: 296 DAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIH 355
               W A+I GL  +        +F +M+ + + P   TF  +  A      ++ GR+I 
Sbjct: 732 SVSPWNAIICGLASHGHASMCLDVFSDMQRYNIKPNPITFIGVLSACCHAGLVEPGRRIF 791

Query: 356 CVLMKTES-ESDLILENCLISMYAKCGVIDNAYNIFSNM-VSRDLVSWNSMVMGFSHHGL 413
            ++    + E D+    C++ +  + G+++ A  +  +M +  D+V W +++     HG 
Sbjct: 792 RIMKSAYNVEPDIKHYGCMVDLLGRAGLLEEAEEMIRSMPMKADIVIWGTLLAACRTHGD 851

Query: 414 ANETLKVFESM 424
            N   +  ES+
Sbjct: 852 VNIGERAAESL 862



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 87/280 (31%), Positives = 135/280 (48%), Gaps = 36/280 (12%)

Query: 239 NSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAV 298
           NS+IN Y + G +++AQ LFD  P  + IS   M+ GY   GQ+ NA  LF  MPD+  V
Sbjct: 308 NSLINMYAKRGSIKDAQLLFDACPTLNPISCNIMVCGYAKAGQLDNARKLFDIMPDKGCV 367

Query: 299 AWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVL 358
           ++T MI GLVQNE F EA  +F +MR+ GV P + T   +  A      I   R IH + 
Sbjct: 368 SYTTMIMGLVQNECFREALEVFKDMRSDGVVPNDLTLVNVIYACSHFGEILNCRMIHAIA 427

Query: 359 MK-------------------------------TESESDLILENCLISMYAKCGVIDNAY 387
           +K                                  E +L+  N +++ YAK G++D A 
Sbjct: 428 IKLFVEGLVLVSTNLMRAYCLCSGVGEARRLFDRMPEVNLVSWNVMLNGYAKAGLVDMAR 487

Query: 388 NIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAG 447
            +F  +  +D++SW +M+ G+      +E L ++ +ML SG   N +  + ++SAC    
Sbjct: 488 ELFERVPDKDVISWGTMIDGYILMNRLHEALVMYRAMLRSGLALNEILVVNLVSACGRLN 547

Query: 448 LVSRGWELFNAM----FDVYK-IQPGPEHYVSMINLLGRA 482
            +  GW+L   +    FD Y  IQ    H+ +   ++  A
Sbjct: 548 AIGDGWQLHGMVVKKGFDCYNFIQTTIIHFYAACGMMDLA 587



 Score = 65.9 bits (159), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 38/128 (29%), Positives = 59/128 (46%), Gaps = 31/128 (24%)

Query: 351 GRQIHCVLMKTESESDLILENCLISM-------------------------------YAK 379
           GRQ+H +++K    S+  ++N LI+M                               YAK
Sbjct: 288 GRQLHSLVLKLGLHSNTFIQNSLINMYAKRGSIKDAQLLFDACPTLNPISCNIMVCGYAK 347

Query: 380 CGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGI 439
            G +DNA  +F  M  +  VS+ +M+MG   +    E L+VF+ M   G  PN +T + +
Sbjct: 348 AGQLDNARKLFDIMPDKGCVSYTTMIMGLVQNECFREALEVFKDMRSDGVVPNDLTLVNV 407

Query: 440 LSACSHAG 447
           + ACSH G
Sbjct: 408 IYACSHFG 415


>gi|357519251|ref|XP_003629914.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355523936|gb|AET04390.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 727

 Score =  315 bits (808), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 184/598 (30%), Positives = 307/598 (51%), Gaps = 32/598 (5%)

Query: 5   NHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRL 64
            +PKS    L  +   + K   +D A+A+F  +P  +V  Y  +L  +  N  L EA  L
Sbjct: 51  QNPKSSSTSLNFTFLNHLKNQKLDSARAVFNKIPSPHVSLYTKLLLAYAHNNNLHEAINL 110

Query: 65  FEEMPE--RNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNE 122
           F ++P   ++ +SW ++I           A KLF+EMP+RN +SW +++ G +  G +NE
Sbjct: 111 FNQIPSNTKDTISWNSVIKASIICNDFVTAVKLFDEMPQRNSISWTTIIHGFLSTGRVNE 170

Query: 123 ARKVFNSMPI--KNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAG 180
           A + FN+MP   K+V +WNAM+ GY     + +A+ LF +M  R+V++WTS+I G  R G
Sbjct: 171 AERFFNAMPYVDKDVATWNAMVNGYCNNGRVNDALRLFCQMPSRDVISWTSIIVGLDRNG 230

Query: 181 EVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNS 240
           +  +    F+ M             GF+  G    +L+              C + +   
Sbjct: 231 KSYQALFFFKNMV------------GFSGVGISSTTLV--------------CGLSAAAK 264

Query: 241 MINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAW 300
           +++ Y    ++      F      DE    S++  Y S  ++ +A  +F     ++ V W
Sbjct: 265 ILDFYAGI-QIHCCMFKFGFCCGLDEFVSASLVTFYASCKRMGDACKVFGETVCKNVVVW 323

Query: 301 TAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMK 360
           TA+++G   N+  VEA  +F EM    V P  ++F+    +     +++ GR IH   +K
Sbjct: 324 TALLTGCGLNDKHVEALEVFSEMMRFNVVPNESSFTSALNSCVGLEDLEKGRVIHAAGIK 383

Query: 361 TESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKV 420
              E+ +   N L+ MY+KCG I +A  +F  +  +++VSWNS+++G + HG     L +
Sbjct: 384 MGLENAVYTGNSLVVMYSKCGFIGDALCVFKGICEKNVVSWNSVIVGCAQHGCGTWALVL 443

Query: 421 FESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLG 480
           F+ ML  G   + +T  G+LSACS +G++ +    F        ++   EHY  M+++LG
Sbjct: 444 FKEMLREGVESDEITLTGLLSACSRSGMLQKARCFFGYFARKRSMKLTVEHYACMVDVLG 503

Query: 481 RAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHV 540
           R G+++EAE     +P E +  +W  LL AC     + ++AE AAKR+ E++P  + A+V
Sbjct: 504 RCGEVEEAEALATSMPVEANSMVWLVLLSACRV-HSSLDVAERAAKRIFEMEPDCSAAYV 562

Query: 541 VLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
           +L N+YA+S R +E  ++RM M   G+ K PG SW+   G    FLS D+      EI
Sbjct: 563 LLSNLYASSRRWLEVARIRMKMKHNGIVKQPGSSWITLKGMRHEFLSADRSHPLTEEI 620


>gi|302770521|ref|XP_002968679.1| hypothetical protein SELMODRAFT_90123 [Selaginella moellendorffii]
 gi|300163184|gb|EFJ29795.1| hypothetical protein SELMODRAFT_90123 [Selaginella moellendorffii]
          Length = 818

 Score =  315 bits (807), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 192/663 (28%), Positives = 337/663 (50%), Gaps = 84/663 (12%)

Query: 18  ITKYSKRGFIDEAKALFQLMP--QRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNV-- 73
           I+ Y K   + +A+++F+ M   QRNVVS+NAM++ + QNG  +EA  L+  M  + +  
Sbjct: 49  ISMYGKCDSLVDARSVFESMDWRQRNVVSWNAMIAAYAQNGHSTEALVLYWRMNLQGLGT 108

Query: 74  --VSWTAMI--CGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNS 129
             V++ +++  C     GR    R  +  +     ++ N++V    R G + +A+++F S
Sbjct: 109 DHVTFVSVLGACSSLAQGREIHNRVFYSGLDSFQSLA-NALVTMYARFGSVGDAKRMFQS 167

Query: 130 MPIKNVISWNAMIAGYVECCMMGEAIVLFEEME--------------------------- 162
           +  ++  SWNA+I  + +      A+ +F+EM+                           
Sbjct: 168 LQTRDETSWNAVILAHSQSGDWSGALRIFKEMKCDVKPNSTTYINVISGFSTPEVLPEGR 227

Query: 163 -----------ERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNG 211
                      + ++V  T++I+ Y + G   E   +F +M ++++VSW  MIG +  NG
Sbjct: 228 KIHAEIVANGFDTDLVVATALINMYGKCGSSHEAREVFDKMKKRDMVSWNVMIGCYVLNG 287

Query: 212 FHKESLLLF--IEMKG------------------------------ICDNGNNCNVQSCN 239
              E+L L+  ++M+G                              I + G +  V    
Sbjct: 288 DFHEALELYQKLDMEGFKRTKATFVSILGACSSVKALAQGRLVHSHILERGLDSEVAVAT 347

Query: 240 SMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVG---QVSNAYYLFHNMPDRD 296
           +++N Y + G LEEA+ +F+ +  RD ++W+++I  Y S G       A  +F  +  RD
Sbjct: 348 ALVNMYAKCGSLEEARKVFNAMKNRDAVAWSTLIGAYASNGYGKDARKARKVFDRLGSRD 407

Query: 297 AVAWTAMISGLVQNELFVEATYLFMEMR-AHGVPPLNATFSVLFGAAGATANIDLGRQIH 355
            ++W AMI+  VQN   V A  +F EM  A G+ P   TF  +  A  +   +   + +H
Sbjct: 408 TISWNAMITTYVQNGCAVAAMKIFREMTGAAGLKPDAVTFIAVLEACASLGRLSEVKALH 467

Query: 356 CVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLAN 415
             + ++E ES++++ N LI+MYA+CG ++ A  +F+    + +VSW +MV  FS +G   
Sbjct: 468 AQISESELESNVVVTNTLINMYARCGSLEEAERLFAAAKEKTVVSWTAMVAAFSQYGRYA 527

Query: 416 ETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSM 475
           E L +F+ M   G  P+ VT+  IL  C+H G + +GW  F  M +++ + P  +H+ +M
Sbjct: 528 EALDLFQEMDLEGVKPDDVTYTSILFVCTHGGSLEQGWRYFTDMAELHALAPTADHFAAM 587

Query: 476 INLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLN 535
           ++LLGR+G++ +A+E +  +PFEPD   W   L AC    G  E+ E AA+R+ ELDP +
Sbjct: 588 VDLLGRSGRLFDAKELLESMPFEPDPVAWMTFLTACRI-HGKLELGEAAAERVYELDPSS 646

Query: 536 APAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQV 595
              ++ + NIYAA G   +   +R  M  +G++K+PG S++  +G +  F SG K   + 
Sbjct: 647 TAPYIAMSNIYAAHGMWEKVASVRKKMEERGLKKLPGLSFIEVDGKLHEFSSGGKYHPRT 706

Query: 596 AEI 598
            EI
Sbjct: 707 DEI 709



 Score =  128 bits (322), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 109/447 (24%), Positives = 199/447 (44%), Gaps = 56/447 (12%)

Query: 133 KNVISWNAMIAGYVECCMMGEAIVLFEEME--ERNVVTWTSMISGYCRAGEVEEGYCLFR 190
           ++ +  NA+I+ Y +C  + +A  +FE M+  +RNVV+W +MI+ Y + G   E   L+ 
Sbjct: 40  RDTMVGNALISMYGKCDSLVDARSVFESMDWRQRNVVSWNAMIAAYAQNGHSTEALVLYW 99

Query: 191 RMPRKNV----VSWTAMIGGFAWNGFHKESLLLFIEMKG-ICDNGNNCNVQSCNSMINGY 245
           RM  + +    V++ +++G  +       SL    E+   +  +G +      N+++  Y
Sbjct: 100 RMNLQGLGTDHVTFVSVLGACS-------SLAQGREIHNRVFYSGLDSFQSLANALVTMY 152

Query: 246 IRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMP---DRDAVAWTA 302
            RFG + +A+ +F ++  RDE SW ++I  +   G  S A  +F  M      ++  +  
Sbjct: 153 ARFGSVGDAKRMFQSLQTRDETSWNAVILAHSQSGDWSGALRIFKEMKCDVKPNSTTYIN 212

Query: 303 MISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTE 362
           +ISG    E+  E                                   GR+IH  ++   
Sbjct: 213 VISGFSTPEVLPE-----------------------------------GRKIHAEIVANG 237

Query: 363 SESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFE 422
            ++DL++   LI+MY KCG    A  +F  M  RD+VSWN M+  +  +G  +E L++++
Sbjct: 238 FDTDLVVATALINMYGKCGSSHEAREVFDKMKKRDMVSWNVMIGCYVLNGDFHEALELYQ 297

Query: 423 SMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRA 482
            +   G      TF+ IL ACS    +++G  L ++      +        +++N+  + 
Sbjct: 298 KLDMEGFKRTKATFVSILGACSSVKALAQG-RLVHSHILERGLDSEVAVATALVNMYAKC 356

Query: 483 GKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVL 542
           G ++EA + V       D   W  L+GA     G  + A  A K    L   +  +   +
Sbjct: 357 GSLEEARK-VFNAMKNRDAVAWSTLIGAYA-SNGYGKDARKARKVFDRLGSRDTISWNAM 414

Query: 543 CNIYAASGRHVEEHKLRMDM-GLKGVR 568
              Y  +G  V   K+  +M G  G++
Sbjct: 415 ITTYVQNGCAVAAMKIFREMTGAAGLK 441



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 75/297 (25%), Positives = 145/297 (48%), Gaps = 24/297 (8%)

Query: 9   SLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNG---RLSEARRLF 65
           S V   T+ +  Y+K G ++EA+ +F  M  R+ V+++ ++  +  NG      +AR++F
Sbjct: 341 SEVAVATALVNMYAKCGSLEEARKVFNAMKNRDAVAWSTLIGAYASNGYGKDARKARKVF 400

Query: 66  EEMPERNVVSWTAMICGLADAGRVCEARKLFEEMP-----ERNVVSWNSMVVGLIRNGEL 120
           + +  R+ +SW AMI      G    A K+F EM      + + V++ +++      G L
Sbjct: 401 DRLGSRDTISWNAMITTYVQNGCAVAAMKIFREMTGAAGLKPDAVTFIAVLEACASLGRL 460

Query: 121 NEAR----KVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGY 176
           +E +    ++  S    NV+  N +I  Y  C  + EA  LF   +E+ VV+WT+M++ +
Sbjct: 461 SEVKALHAQISESELESNVVVTNTLINMYARCGSLEEAERLFAAAKEKTVVSWTAMVAAF 520

Query: 177 CRAGEVEEGYCLFRRMPRKNV----VSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNN 232
            + G   E   LF+ M  + V    V++T+++      G  ++    F +M  +  +   
Sbjct: 521 SQYGRYAEALDLFQEMDLEGVKPDDVTYTSILFVCTHGGSLEQGWRYFTDMAEL--HALA 578

Query: 233 CNVQSCNSMINGYIRFGRLEEAQNLFDTVPVR-DEISWTSM-----IDGYLSVGQVS 283
                  +M++   R GRL +A+ L +++P   D ++W +      I G L +G+ +
Sbjct: 579 PTADHFAAMVDLLGRSGRLFDAKELLESMPFEPDPVAWMTFLTACRIHGKLELGEAA 635



 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 53/185 (28%), Positives = 94/185 (50%), Gaps = 15/185 (8%)

Query: 330 PLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNI 389
           P N TF  +  +  +  ++  GR +H  +  +  E D ++ N LISMY KC  + +A ++
Sbjct: 5   PDNVTFLTVLCSCSSCGDVVEGRALHERIRCSRFERDTMVGNALISMYGKCDSLVDARSV 64

Query: 390 FSNM--VSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAG 447
           F +M    R++VSWN+M+  ++ +G + E L ++  M   G   + VTF+ +L ACS   
Sbjct: 65  FESMDWRQRNVVSWNAMIAAYAQNGHSTEALVLYWRMNLQGLGTDHVTFVSVLGACSS-- 122

Query: 448 LVSRGWELFNAMFDVYKIQPGPEHYVSMINLL----GRAGKIKEAEEFVLRLPFEPDHRI 503
            +++G E+ N +F       G + + S+ N L     R G + +A+     L    D   
Sbjct: 123 -LAQGREIHNRVF-----YSGLDSFQSLANALVTMYARFGSVGDAKRMFQSLQTR-DETS 175

Query: 504 WGALL 508
           W A++
Sbjct: 176 WNAVI 180



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 48/167 (28%), Positives = 89/167 (53%), Gaps = 14/167 (8%)

Query: 8   KSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEE 67
           +S VV   + I  Y++ G ++EA+ LF    ++ VVS+ AM++ F Q GR +EA  LF+E
Sbjct: 476 ESNVVVTNTLINMYARCGSLEEAERLFAAAKEKTVVSWTAMVAAFSQYGRYAEALDLFQE 535

Query: 68  MPERNV----VSWTAMICGLADAGRVCEARKLFEEMPERNVVS-----WNSMVVGLIRNG 118
           M    V    V++T+++      G + +  + F +M E + ++     + +MV  L R+G
Sbjct: 536 MDLEGVKPDDVTYTSILFVCTHGGSLEQGWRYFTDMAELHALAPTADHFAAMVDLLGRSG 595

Query: 119 ELNEARKVFNSMPIK-NVISWNAMIAGYVECCMMGEAIVLFEEMEER 164
            L +A+++  SMP + + ++W      ++  C +   + L E   ER
Sbjct: 596 RLFDAKELLESMPFEPDPVAWMT----FLTACRIHGKLELGEAAAER 638


>gi|449464596|ref|XP_004150015.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
 gi|449529868|ref|XP_004171920.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 734

 Score =  315 bits (807), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 192/562 (34%), Positives = 297/562 (52%), Gaps = 16/562 (2%)

Query: 49  LSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEM----PERNV 104
            S   ++G +S A  LF  + E N+  W +MI GL+ +     A   F  M     E N 
Sbjct: 70  FSAVSRSGDISYAISLFNSIEEPNLFIWNSMIRGLSMSLSPALALVFFVRMIYSGVEPNS 129

Query: 105 VSWNSMVVGLIRNGELNEARKVFNSMP----IKNVISWNAMIAGYVECCMMGEAIVLFEE 160
            ++  ++    +    +E +++   +     + +V    ++I  Y +   M  A ++F++
Sbjct: 130 YTFPFLLKSCAKLASAHEGKQIHAHVLKLGFVSDVFIHTSLINMYAQSGEMNNAQLVFDQ 189

Query: 161 MEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLF 220
              R+ +++T++I+GY   G ++    LF  MP K+VVSW AMI G+A  G  KE+LLLF
Sbjct: 190 SNFRDAISFTALIAGYALWGYMDRARQLFDEMPVKDVVSWNAMIAGYAQMGRSKEALLLF 249

Query: 221 IEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEIS----WTSMIDGY 276
            +M+      N   + S   +++   +   L+   ++   +  R   S      ++ID Y
Sbjct: 250 EDMRKANVPPNESTIVS---VLSACAQSNALDLGNSMRSWIEDRGLCSNLKLVNALIDMY 306

Query: 277 LSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFS 336
              G +  A  LF +M +RD ++W  MI G      + EA  LF EM A GV P   TF 
Sbjct: 307 SKCGDLQTARELFDDMLERDVISWNVMIGGYTHMCSYKEALALFREMLASGVEPTEITFL 366

Query: 337 VLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSR 396
            +  +      IDLG+ IH  + K  +     L   LI +YAKCG I  A  +F  M  +
Sbjct: 367 SILPSCAHLGAIDLGKWIHAYINKNFNSVSTSLSTSLIDLYAKCGNIVAARQVFDGMKIK 426

Query: 397 DLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELF 456
            L SWN+M+ G + HG A++  ++F  M   G  PN +TF+GILSAC HAGLV  G + F
Sbjct: 427 SLASWNAMICGLAMHGQADKAFELFSKMSSDGIEPNEITFVGILSACKHAGLVDLGQQFF 486

Query: 457 NAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEG 516
           ++M   YKI P  +HY  MI+LLGRAG  +EAE  +  +  +PD  IWG+LLGAC    G
Sbjct: 487 SSMVQDYKISPKSQHYGCMIDLLGRAGLFEEAESLLQNMEVKPDGAIWGSLLGACR-DHG 545

Query: 517 NAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWL 576
             E+ E  A+RL EL+P N  A+V+L NIYA +G+  +  ++R  +  +G++KVPGC+ +
Sbjct: 546 RVELGELVAERLFELEPDNPGAYVLLSNIYAGAGKWDDVARIRTRLNDRGMKKVPGCTTI 605

Query: 577 MRNGGIQMFLSGDKIPAQVAEI 598
             +  +  FL GDK+  Q  +I
Sbjct: 606 EVDNVVHEFLVGDKVHPQSEDI 627



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 109/386 (28%), Positives = 182/386 (47%), Gaps = 17/386 (4%)

Query: 41  NVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMP 100
           +V  + ++++ + Q+G ++ A+ +F++   R+ +S+TA+I G A  G +  AR+LF+EMP
Sbjct: 163 DVFIHTSLINMYAQSGEMNNAQLVFDQSNFRDAISFTALIAGYALWGYMDRARQLFDEMP 222

Query: 101 ERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEE 160
            ++VVSWN+M+ G  + G   EA  +F  M   NV    + I   +  C    A+ L   
Sbjct: 223 VKDVVSWNAMIAGYAQMGRSKEALLLFEDMRKANVPPNESTIVSVLSACAQSNALDLGNS 282

Query: 161 M----EER----NVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGF 212
           M    E+R    N+    ++I  Y + G+++    LF  M  ++V+SW  MIGG+     
Sbjct: 283 MRSWIEDRGLCSNLKLVNALIDMYSKCGDLQTARELFDDMLERDVISWNVMIGGYTHMCS 342

Query: 213 HKESLLLFIEMKGICDNGNNCN----VQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEIS 268
           +KE+L LF EM               + SC  +  G I  G+   A  +           
Sbjct: 343 YKEALALFREMLASGVEPTEITFLSILPSCAHL--GAIDLGKWIHAY-INKNFNSVSTSL 399

Query: 269 WTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGV 328
            TS+ID Y   G +  A  +F  M  +   +W AMI GL  +    +A  LF +M + G+
Sbjct: 400 STSLIDLYAKCGNIVAARQVFDGMKIKSLASWNAMICGLAMHGQADKAFELFSKMSSDGI 459

Query: 329 PPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILE-NCLISMYAKCGVIDNAY 387
            P   TF  +  A      +DLG+Q    +++    S       C+I +  + G+ + A 
Sbjct: 460 EPNEITFVGILSACKHAGLVDLGQQFFSSMVQDYKISPKSQHYGCMIDLLGRAGLFEEAE 519

Query: 388 NIFSNM-VSRDLVSWNSMVMGFSHHG 412
           ++  NM V  D   W S++     HG
Sbjct: 520 SLLQNMEVKPDGAIWGSLLGACRDHG 545


>gi|359490816|ref|XP_002271825.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Vitis vinifera]
          Length = 702

 Score =  315 bits (806), Expect = 6e-83,   Method: Compositional matrix adjust.
 Identities = 199/611 (32%), Positives = 312/611 (51%), Gaps = 58/611 (9%)

Query: 15  TSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMP----- 69
           T  +  Y + G +D+A  +F  MPQRN+ S+ A+LS  + +G   EA  LFE++      
Sbjct: 98  TKLLQMYGRFGCLDDANLVFVKMPQRNLYSWTAILSVHVDHGYFEEALSLFEKLQLDDIG 157

Query: 70  -ERNVVSWTAMICG---LADAGR------------VCEARKLFEEMPERNVVSWNSMVVG 113
            E  V      +CG   + + GR            +  A K+F     +NVVS+N+M+VG
Sbjct: 158 LEFFVFPVVLKLCGGLRVLELGRQLHGVVIKRCADMGSALKIFSGFSVKNVVSYNTMIVG 217

Query: 114 LIRNGELNEARKVFNSMPI--KNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTS 171
              NG + +A+++F+ M +  K+ ISWN+MI+GY +  +  EA+ +F ++     +   S
Sbjct: 218 YCENGNVEKAKELFDQMELVGKDTISWNSMISGYADNLLFDEALSMFRDLLMEEGIEADS 277

Query: 172 MISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGN 231
              G   A   +        + R   V   A++ G  WN F   +L   +EM   C++  
Sbjct: 278 FTLGSVLAACAD-----MASLRRGKEVHAQAVVRGLHWNTFVGGAL---VEMYSKCED-- 327

Query: 232 NCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHN 291
                              L+ AQ  FD V  RD  +W  +I GY    Q+ N   L   
Sbjct: 328 -------------------LKAAQLAFDGVTERDTATWNVLISGYACCNQLENIQNLIQK 368

Query: 292 MP----DRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATAN 347
           M     + +   W  +ISG V+N     A  LF EM+   + P   T  ++  A    A 
Sbjct: 369 MKGDGFEPNVYTWNGIISGHVENGHNELALRLFTEMQTSSLRPDIYTVGIILPACARLAT 428

Query: 348 IDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMG 407
           I  G+Q+H   ++   E D+ +   L+ MYAKCG I +A  +++ + + +LVS N+M+  
Sbjct: 429 IARGKQVHAHSIRQGYELDVHIGAALVDMYAKCGSIKHAMQVYNRISNPNLVSQNAMLTA 488

Query: 408 FSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQP 467
           ++ HG  +E + +F +ML +G  P+ VTFL +LS+C HAG V  G E F+ M   Y + P
Sbjct: 489 YAMHGHGDEGIALFRNMLGNGFRPDHVTFLSVLSSCVHAGAVETGHEFFDLM-TYYNVTP 547

Query: 468 GPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKR 527
             +HY  +++LL RAG++ EA E V ++P +PD  +WGALLG C    GN E+ E AA+ 
Sbjct: 548 SLKHYTCIVDLLSRAGRLDEAYELVKKIPRKPDSVMWGALLGGC-VIWGNVELGEIAAES 606

Query: 528 LLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLS 587
           L+EL+P N   +V+L N+YA +GR  +  + R  +  +G+ K PGCSW+     I +FLS
Sbjct: 607 LIELEPNNTGNYVLLANLYAYAGRWHDLDRTRQMIKDRGMHKSPGCSWIEDREDIHVFLS 666

Query: 588 GDKIPAQVAEI 598
            DK   +  +I
Sbjct: 667 CDKSHEKTEDI 677



 Score = 53.1 bits (126), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 25/78 (32%), Positives = 42/78 (53%)

Query: 347 NIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVM 406
            ++LG+Q+H   +KT       +E  L+ MY + G +D+A  +F  M  R+L SW +++ 
Sbjct: 74  TLNLGKQVHAHTLKTGFHGHEFVETKLLQMYGRFGCLDDANLVFVKMPQRNLYSWTAILS 133

Query: 407 GFSHHGLANETLKVFESM 424
               HG   E L +FE +
Sbjct: 134 VHVDHGYFEEALSLFEKL 151


>gi|357436395|ref|XP_003588473.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355477521|gb|AES58724.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 827

 Score =  315 bits (806), Expect = 6e-83,   Method: Compositional matrix adjust.
 Identities = 203/641 (31%), Positives = 323/641 (50%), Gaps = 70/641 (10%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMP----ERNV 73
           I  Y K G +DEAK + + M Q++ VS+N++++  + NG + EA  L E M     E NV
Sbjct: 176 IDMYGKCGSLDEAKKVLEGMTQKDCVSWNSIITACVANGVVYEALDLLENMLLSELEPNV 235

Query: 74  VSWTAMICGLAD----------------AGRVCEARKLFEEMPERNVVSW---------- 107
           V+W+A+I G +                 AG   +AR L   +P  + + W          
Sbjct: 236 VTWSAVIGGFSSNAYDVESVELFARMVGAGVAPDARTLASVLPACSRMKWLFVGKELHGY 295

Query: 108 -------------NSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEA 154
                        N++V    R G++  A K+F+    K   S+N MI GY+E   +G+A
Sbjct: 296 IVRHELFSNGFVANALVGMYRRCGDMKSAFKIFSKFARKCAASYNTMIVGYLENGNVGKA 355

Query: 155 IVLFEEME----ERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNV----VSWTAMIGG 206
             LF +ME    ER+ ++W  MISG+      ++   LFR +  + +     +  +++ G
Sbjct: 356 KELFYQMEQEGVERDRISWNCMISGHVDNFMFDDALMLFRDLLMEGIEPDSFTLGSILTG 415

Query: 207 FAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMING-----YIRFGRLEEAQNLFDTV 261
           FA        +    + K I        +QS NS + G     Y +   +  AQ  FD +
Sbjct: 416 FA-------DMTCIRQGKEIHSIAIVKGLQS-NSFVGGALVEMYCKCNDIIAAQMAFDEI 467

Query: 262 PVRDEISWTSMIDGYLSVGQVSNAYYLFHNMP----DRDAVAWTAMISGLVQNELFVEAT 317
             RD  +W ++I GY    Q+     L   M     + +   W ++++GLV+N+ +  A 
Sbjct: 468 SERDTSTWNALISGYARCNQIGKIRELVERMKSDGFEPNVYTWNSILAGLVENKQYDLAM 527

Query: 318 YLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMY 377
            LF EM+   + P   T  ++  A    A I  G+Q+H   ++   +SD  +   L+ MY
Sbjct: 528 QLFNEMQVSSLRPDIYTVGIILAACSKLATIHRGKQVHAYSIRAGYDSDAHIGATLVDMY 587

Query: 378 AKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFL 437
           AKCG I + Y +++ + + +LV  N+M+  ++ HG   E + +F  ML+S   P+ VTFL
Sbjct: 588 AKCGSIKHCYQVYNKISNPNLVCHNAMLTAYAMHGHGEEGIVIFRRMLDSRVRPDHVTFL 647

Query: 438 GILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPF 497
            +LS+C HAG +  G+E F  M + Y I P  +HY  M++LL RAGK+ EA + +  +P 
Sbjct: 648 SVLSSCVHAGSIKIGYECFYLM-ETYNITPTLKHYTCMVDLLSRAGKLDEAYQLIKNMPM 706

Query: 498 EPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHK 557
           E D   W ALLG C F      + E AA++L+EL+P N   +V+L N+YA++GR  +  K
Sbjct: 707 EADSVTWSALLGGC-FIHKEVALGEIAAEKLIELEPSNTGNYVLLANLYASAGRWHDLAK 765

Query: 558 LRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
            R  M  KG++K PGCSW+    G+ +FL+ DK   +V EI
Sbjct: 766 TRELMNDKGMQKSPGCSWIEDRDGVHIFLASDKSHQRVEEI 806



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 151/564 (26%), Positives = 249/564 (44%), Gaps = 65/564 (11%)

Query: 48  MLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNV-VS 106
           +L  +  N    +A  +F++M  +N+ SWTA++    + G   +   LFEE     +   
Sbjct: 72  LLQMYSINSSFEDAWHMFDKMTLKNLHSWTAVLRLHLNMGLFYKGFMLFEEFLCDGLGEK 131

Query: 107 WNSMVVGLIRN-----GELNEARKVFNSMPIK-----NVISWNAMIAGYVECCMMGEAIV 156
            +  V  ++ N     G+L   R+V + M +K     NV   NA+I  Y +C  + EA  
Sbjct: 132 LDFFVFPVVLNICCGLGDLELGRQV-HGMVLKHGFVTNVYVGNALIDMYGKCGSLDEAKK 190

Query: 157 LFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRM----PRKNVVSWTAMIGGFAWNGF 212
           + E M +++ V+W S+I+     G V E   L   M       NVV+W+A+IGGF+ N +
Sbjct: 191 VLEGMTQKDCVSWNSIITACVANGVVYEALDLLENMLLSELEPNVVTWSAVIGGFSSNAY 250

Query: 213 HKESLLLFIEM--KGICDNGNNCN--VQSCNSM--------INGYI-------------- 246
             ES+ LF  M   G+  +       + +C+ M        ++GYI              
Sbjct: 251 DVESVELFARMVGAGVAPDARTLASVLPACSRMKWLFVGKELHGYIVRHELFSNGFVANA 310

Query: 247 ------RFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMP----DRD 296
                 R G ++ A  +F     +   S+ +MI GYL  G V  A  LF+ M     +RD
Sbjct: 311 LVGMYRRCGDMKSAFKIFSKFARKCAASYNTMIVGYLENGNVGKAKELFYQMEQEGVERD 370

Query: 297 AVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATF-SVLFGAAGATANIDLGRQIH 355
            ++W  MISG V N +F +A  LF ++   G+ P + T  S+L G A  T  I  G++IH
Sbjct: 371 RISWNCMISGHVDNFMFDDALMLFRDLLMEGIEPDSFTLGSILTGFADMTC-IRQGKEIH 429

Query: 356 CVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLAN 415
            + +    +S+  +   L+ MY KC  I  A   F  +  RD  +WN+++ G++      
Sbjct: 430 SIAIVKGLQSNSFVGGALVEMYCKCNDIIAAQMAFDEISERDTSTWNALISGYARCNQIG 489

Query: 416 ETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSM 475
           +  ++ E M   G  PN  T+  IL+            +LFN M  V  ++P   + V +
Sbjct: 490 KIRELVERMKSDGFEPNVYTWNSILAGLVENKQYDLAMQLFNEM-QVSSLRPDI-YTVGI 547

Query: 476 I----NLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLEL 531
           I    + L    + K+   + +R  ++ D  I   L+     C       +H  +   ++
Sbjct: 548 ILAACSKLATIHRGKQVHAYSIRAGYDSDAHIGATLVDMYAKCGS----IKHCYQVYNKI 603

Query: 532 DPLNAPAHVVLCNIYAASGRHVEE 555
              N   H  +   YA  G H EE
Sbjct: 604 SNPNLVCHNAMLTAYAMHG-HGEE 626



 Score =  112 bits (280), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 100/426 (23%), Positives = 176/426 (41%), Gaps = 75/426 (17%)

Query: 170 TSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIG-----GFAWNGF------------ 212
           T ++  Y      E+ + +F +M  KN+ SWTA++      G  + GF            
Sbjct: 70  TKLLQMYSINSSFEDAWHMFDKMTLKNLHSWTAVLRLHLNMGLFYKGFMLFEEFLCDGLG 129

Query: 213 HKESLLLFIEMKGIC-----------------DNGNNCNVQSCNSMINGYIRFGRLEEAQ 255
            K    +F  +  IC                  +G   NV   N++I+ Y + G L+EA+
Sbjct: 130 EKLDFFVFPVVLNICCGLGDLELGRQVHGMVLKHGFVTNVYVGNALIDMYGKCGSLDEAK 189

Query: 256 NLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNM----PDRDAVAWTAMISGLVQNE 311
            + + +  +D +SW S+I   ++ G V  A  L  NM     + + V W+A+I G   N 
Sbjct: 190 KVLEGMTQKDCVSWNSIITACVANGVVYEALDLLENMLLSELEPNVVTWSAVIGGFSSNA 249

Query: 312 LFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILEN 371
             VE+  LF  M   GV P   T + +  A      + +G+++H  +++ E  S+  + N
Sbjct: 250 YDVESVELFARMVGAGVAPDARTLASVLPACSRMKWLFVGKELHGYIVRHELFSNGFVAN 309

Query: 372 CLISMYAKCGVIDNAYNIFSNM-----------------------------------VSR 396
            L+ MY +CG + +A+ IFS                                     V R
Sbjct: 310 ALVGMYRRCGDMKSAFKIFSKFARKCAASYNTMIVGYLENGNVGKAKELFYQMEQEGVER 369

Query: 397 DLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELF 456
           D +SWN M+ G   + + ++ L +F  +L  G  P+S T   IL+  +    + +G E+ 
Sbjct: 370 DRISWNCMISGHVDNFMFDDALMLFRDLLMEGIEPDSFTLGSILTGFADMTCIRQGKEI- 428

Query: 457 NAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEG 516
           +++  V  +Q       +++ +  +   I  A+     +  E D   W AL+     C  
Sbjct: 429 HSIAIVKGLQSNSFVGGALVEMYCKCNDIIAAQMAFDEIS-ERDTSTWNALISGYARCNQ 487

Query: 517 NAEIAE 522
             +I E
Sbjct: 488 IGKIRE 493



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 69/266 (25%), Positives = 122/266 (45%), Gaps = 9/266 (3%)

Query: 270 TSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGV- 328
           T ++  Y       +A+++F  M  ++  +WTA++   +   LF +   LF E    G+ 
Sbjct: 70  TKLLQMYSINSSFEDAWHMFDKMTLKNLHSWTAVLRLHLNMGLFYKGFMLFEEFLCDGLG 129

Query: 329 PPLNA-TFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAY 387
             L+   F V+        +++LGRQ+H +++K    +++ + N LI MY KCG +D A 
Sbjct: 130 EKLDFFVFPVVLNICCGLGDLELGRQVHGMVLKHGFVTNVYVGNALIDMYGKCGSLDEAK 189

Query: 388 NIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAG 447
            +   M  +D VSWNS++     +G+  E L + E+ML S   PN VT+  ++   S   
Sbjct: 190 KVLEGMTQKDCVSWNSIITACVANGVVYEALDLLENMLLSELEPNVVTWSAVIGGFSSNA 249

Query: 448 LVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKI---KEAEEFVLRLPFEPDHRIW 504
                 ELF  M     + P      S++    R   +   KE   +++R     +  + 
Sbjct: 250 YDVESVELFARMVGA-GVAPDARTLASVLPACSRMKWLFVGKELHGYIVRHELFSNGFVA 308

Query: 505 GALLGA---CGFCEGNAEIAEHAAKR 527
            AL+G    CG  +   +I    A++
Sbjct: 309 NALVGMYRRCGDMKSAFKIFSKFARK 334



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 44/190 (23%), Positives = 92/190 (48%), Gaps = 14/190 (7%)

Query: 328 VPPLNAT-FSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNA 386
            PPL +T +S +  ++ +   + LG+Q+H   +KT   +   ++  L+ MY+     ++A
Sbjct: 29  TPPLTSTTYSTILQSSNS---LTLGKQLHSHSIKTGFYNHNFVQTKLLQMYSINSSFEDA 85

Query: 387 YNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLES--GTHPNSVTFLGILSACS 444
           +++F  M  ++L SW +++    + GL  +   +FE  L    G   +   F  +L+ C 
Sbjct: 86  WHMFDKMTLKNLHSWTAVLRLHLNMGLFYKGFMLFEEFLCDGLGEKLDFFVFPVVLNICC 145

Query: 445 HAGLVSRGWELFNAMFD---VYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDH 501
             G +  G ++   +     V  +  G     ++I++ G+ G + EA++ VL    + D 
Sbjct: 146 GLGDLELGRQVHGMVLKHGFVTNVYVGN----ALIDMYGKCGSLDEAKK-VLEGMTQKDC 200

Query: 502 RIWGALLGAC 511
             W +++ AC
Sbjct: 201 VSWNSIITAC 210


>gi|224123788|ref|XP_002319164.1| predicted protein [Populus trichocarpa]
 gi|222857540|gb|EEE95087.1| predicted protein [Populus trichocarpa]
          Length = 989

 Score =  315 bits (806), Expect = 6e-83,   Method: Compositional matrix adjust.
 Identities = 192/623 (30%), Positives = 307/623 (49%), Gaps = 51/623 (8%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMP----ERNV 73
           +T YS+      A+ +F  M  ++ VS+N+++SG  Q G    A  LF +M     + + 
Sbjct: 255 VTLYSRMPNFVSAEKVFSKMQSKDEVSFNSLISGLAQQGFSDGALELFTKMKRDYLKPDC 314

Query: 74  VSWTAMICGLADAGRVCE-----------------------------------ARKLFEE 98
           V+  +++   A  G +C+                                   A ++F  
Sbjct: 315 VTVASLLSACASNGALCKGEQLHSYVIKAGISSDMIVEGALLDLYVNCSDIKTAHEMFLT 374

Query: 99  MPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLF 158
               NVV WN M+V   +   L+E+ ++F  M IK +I         +  C    A+ L 
Sbjct: 375 AQTENVVLWNVMLVAFGKLDNLSESFRIFRQMQIKGLIPNQFTYPSILRTCTSVGALDLG 434

Query: 159 EEMEER--------NVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWN 210
           E++  +        NV   + +I  Y + G+++  + + R +   +VVSWTA+I G+A +
Sbjct: 435 EQIHTQVIKTGFQFNVYVCSVLIDMYAKHGKLDTAHVILRTLTEDDVVSWTALISGYAQH 494

Query: 211 GFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGY--IRFGRLEEAQNLFDTVPVRDEIS 268
               E+L  F EM       +N    S  S   G   +  GR   AQ+        D   
Sbjct: 495 NLFAEALKHFKEMLNRGIQSDNIGFSSAISACAGIQALNQGRQIHAQSYVSGYS-EDLSI 553

Query: 269 WTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGV 328
             +++  Y   G++  AY  F  +  +D+++W  +ISG  Q+    +A  +F +M    +
Sbjct: 554 GNALVSLYARCGRIKEAYLEFEKIDAKDSISWNGLISGFAQSGYCEDALKVFAQMNRAKL 613

Query: 329 PPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYN 388
                TF     AA   ANI  G+QIH +++K   +SD+ + N LI+ YAKCG I++A  
Sbjct: 614 EASFFTFGSAVSAAANIANIKQGKQIHAMIIKRGFDSDIEVSNALITFYAKCGSIEDARR 673

Query: 389 IFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGL 448
            F  M  ++ VSWN+M+ G+S HG  NE + +FE M + G  PN VTF+G+LSACSH GL
Sbjct: 674 EFCEMPEKNDVSWNAMITGYSQHGYGNEAVNLFEKMKQVGEMPNHVTFVGVLSACSHVGL 733

Query: 449 VSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALL 508
           V++G   F +M   + + P P HY  +++L+ RAG +  A +F+  +P EPD  IW  LL
Sbjct: 734 VTKGLGYFESMSKEHGLVPKPAHYACVVDLISRAGFLSRARKFIEEMPIEPDATIWRTLL 793

Query: 509 GACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVR 568
            AC     N E+ E AA+ LLEL+P ++  +V+L N+YA SG+     + R  M  +GV+
Sbjct: 794 SACTV-HKNVEVGEFAAQHLLELEPEDSATYVLLSNMYAVSGKWDCRDQTRQMMRNRGVK 852

Query: 569 KVPGCSWLMRNGGIQMFLSGDKI 591
           K PG SW+     +  F  GD++
Sbjct: 853 KEPGRSWIEVKNSVHAFYVGDRL 875



 Score =  166 bits (419), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 146/572 (25%), Positives = 257/572 (44%), Gaps = 74/572 (12%)

Query: 21  YSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMI 80
           Y   G +D    +F+ MP R+V S++ ++SGF++    +    LF  M E NV   +   
Sbjct: 55  YFALGDLDGVVKVFEDMPNRSVRSWDKIISGFMEKKMSNRVLDLFSCMIEENV---SPTE 111

Query: 81  CGLADAGRVCEARKL----FEEMPERNV--------VSWNSMVVGLIRNGELNEARKVFN 128
              A   R C   ++     E++  R +        +  N ++    +NG +  ARKVF+
Sbjct: 112 ISFASVLRACSGHRIGIRYAEQIHARIICHGLLCSPIISNPLIGLYAKNGLIISARKVFD 171

Query: 129 SMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVV----TWTSMISGYCR-----A 179
           ++  K+ +SW AMI+G+ +     EAI LF EM    +      ++S++SG  +      
Sbjct: 172 NLCTKDSVSWVAMISGFSQNGYEEEAIHLFCEMHTAGIFPTPYVFSSVLSGCTKIKLFDV 231

Query: 180 GE------------VEEGYC-----LFRRMPR-------------KNVVSWTAMIGGFAW 209
           GE            +E   C     L+ RMP              K+ VS+ ++I G A 
Sbjct: 232 GEQLHALVFKYGSSLETYVCNALVTLYSRMPNFVSAEKVFSKMQSKDEVSFNSLISGLAQ 291

Query: 210 NGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTV----PVRD 265
            GF   +L LF +MK    +    +  +  S+++     G L + + L   V       D
Sbjct: 292 QGFSDGALELFTKMK---RDYLKPDCVTVASLLSACASNGALCKGEQLHSYVIKAGISSD 348

Query: 266 EISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRA 325
            I   +++D Y++   +  A+ +F      + V W  M+    + +   E+  +F +M+ 
Sbjct: 349 MIVEGALLDLYVNCSDIKTAHEMFLTAQTENVVLWNVMLVAFGKLDNLSESFRIFRQMQI 408

Query: 326 HGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDN 385
            G+ P   T+  +     +   +DLG QIH  ++KT  + ++ + + LI MYAK G +D 
Sbjct: 409 KGLIPNQFTYPSILRTCTSVGALDLGEQIHTQVIKTGFQFNVYVCSVLIDMYAKHGKLDT 468

Query: 386 AYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSH 445
           A+ I   +   D+VSW +++ G++ H L  E LK F+ ML  G   +++ F   +SAC+ 
Sbjct: 469 AHVILRTLTEDDVVSWTALISGYAQHNLFAEALKHFKEMLNRGIQSDNIGFSSAISACAG 528

Query: 446 AGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFE----PDH 501
              +++G ++ +A   V           ++++L  R G+IKEA      L FE     D 
Sbjct: 529 IQALNQGRQI-HAQSYVSGYSEDLSIGNALVSLYARCGRIKEA-----YLEFEKIDAKDS 582

Query: 502 RIWGALLGA---CGFCEGNAEIAEHAAKRLLE 530
             W  L+      G+CE   ++     +  LE
Sbjct: 583 ISWNGLISGFAQSGYCEDALKVFAQMNRAKLE 614



 Score =  149 bits (375), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 125/511 (24%), Positives = 227/511 (44%), Gaps = 34/511 (6%)

Query: 41  NVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADA----GRVCEARKLF 96
           N  +Y  +L   L +G L E ++L  ++ +    + + +   L D     G +    K+F
Sbjct: 9   NCQTYIWLLDLCLNSGSLVECKKLHGKILKLGFGNESVLCNKLVDVYFALGDLDGVVKVF 68

Query: 97  EEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIV 156
           E+MP R+V SW+ ++ G +     N    +F+ M  +NV       A  +  C      +
Sbjct: 69  EDMPNRSVRSWDKIISGFMEKKMSNRVLDLFSCMIEENVSPTEISFASVLRACSGHRIGI 128

Query: 157 LF-EEMEERNV--------VTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGF 207
            + E++  R +        +    +I  Y + G +     +F  +  K+ VSW AMI GF
Sbjct: 129 RYAEQIHARIICHGLLCSPIISNPLIGLYAKNGLIISARKVFDNLCTKDSVSWVAMISGF 188

Query: 208 AWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNL----FDTVPV 263
           + NG+ +E++ LF EM      G        +S+++G  +    +  + L    F     
Sbjct: 189 SQNGYEEEAIHLFCEMH---TAGIFPTPYVFSSVLSGCTKIKLFDVGEQLHALVFKYGSS 245

Query: 264 RDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEM 323
            +     +++  Y  +    +A  +F  M  +D V++ ++ISGL Q      A  LF +M
Sbjct: 246 LETYVCNALVTLYSRMPNFVSAEKVFSKMQSKDEVSFNSLISGLAQQGFSDGALELFTKM 305

Query: 324 RAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVI 383
           +   + P   T + L  A  +   +  G Q+H  ++K    SD+I+E  L+ +Y  C  I
Sbjct: 306 KRDYLKPDCVTVASLLSACASNGALCKGEQLHSYVIKAGISSDMIVEGALLDLYVNCSDI 365

Query: 384 DNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSAC 443
             A+ +F    + ++V WN M++ F      +E+ ++F  M   G  PN  T+  IL  C
Sbjct: 366 KTAHEMFLTAQTENVVLWNVMLVAFGKLDNLSESFRIFRQMQIKGLIPNQFTYPSILRTC 425

Query: 444 SHAGLVSRGWELFNAMFDVYKIQPGPEHYVS----MINLLGRAGKIKEAEEFVLRLPFEP 499
           +  G +  G ++   +     I+ G +  V     +I++  + GK+  A   +LR   E 
Sbjct: 426 TSVGALDLGEQIHTQV-----IKTGFQFNVYVCSVLIDMYAKHGKLDTA-HVILRTLTED 479

Query: 500 DHRIWGALLGACGFCEGN--AEIAEHAAKRL 528
           D   W AL+   G+ + N  AE  +H  + L
Sbjct: 480 DVVSWTALIS--GYAQHNLFAEALKHFKEML 508



 Score = 42.4 bits (98), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 36/115 (31%), Positives = 55/115 (47%), Gaps = 10/115 (8%)

Query: 7   PKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQ----RNVVSYNAMLSGFLQNGRLSEAR 62
           P+   V   + IT YS+ G+ +EA  LF+ M Q     N V++  +LS     G +++  
Sbjct: 679 PEKNDVSWNAMITGYSQHGYGNEAVNLFEKMKQVGEMPNHVTFVGVLSACSHVGLVTKGL 738

Query: 63  RLFEEM-PERNVVSWTAMICGLAD----AGRVCEARKLFEEMP-ERNVVSWNSMV 111
             FE M  E  +V   A    + D    AG +  ARK  EEMP E +   W +++
Sbjct: 739 GYFESMSKEHGLVPKPAHYACVVDLISRAGFLSRARKFIEEMPIEPDATIWRTLL 793


>gi|357132450|ref|XP_003567843.1| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
           chloroplastic-like [Brachypodium distachyon]
          Length = 868

 Score =  314 bits (805), Expect = 7e-83,   Method: Compositional matrix adjust.
 Identities = 207/635 (32%), Positives = 312/635 (49%), Gaps = 87/635 (13%)

Query: 46  NAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEM------ 99
           NAMLS  ++ G    A ++F +MPER+V SW  M+ G   AG + EA  L+  M      
Sbjct: 133 NAMLSMLVRFGETWHAWKVFAKMPERDVFSWNVMVGGYGKAGFLEEALDLYHRMLWAGAR 192

Query: 100 ----------------PERN-----------------VVSWNSMVVGLIRNGELNEARKV 126
                           P+                   V   N++V    + G++  ARKV
Sbjct: 193 PDVYTFPCVLRSCGGVPDLTMGREVHAHVLRFGLGVEVDVLNALVTMYAKCGDVEAARKV 252

Query: 127 FNSMPIKNVISWNAMIAGYVEC--CMMGEAIVL--FEEMEERNVVTWTS----------- 171
           F+ M + + ISWNAMIAG+ E   C  G  + L   E+  E N++T TS           
Sbjct: 253 FDGMSLTDCISWNAMIAGHFENHECEAGLELFLHMLEDEVEPNLMTITSVTVASGLLSDL 312

Query: 172 ------------------------MISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGF 207
                                   +I  Y   G + E   +F RM  ++ +SWTAMI G+
Sbjct: 313 DFAKEIHALAVKRGFATDVAFCNSLIQMYSSLGRMGEACTVFSRMETRDAMSWTAMISGY 372

Query: 208 AWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEI 267
             NGF  ++L ++  M+    N  + +  +  S +      GRL+    L +    +  I
Sbjct: 373 EKNGFPDKALEVYALME---VNNVSPDDVTVASALAACASLGRLDVGIKLHELATSKGFI 429

Query: 268 SW----TSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEM 323
            +     ++++ Y     +  A  +F  MPD+D ++W++MI+G   N    EA Y F  M
Sbjct: 430 RYIVVANALVEMYAKSKIIEKAIEVFKYMPDKDVISWSSMIAGFCFNHKNFEALYYFRHM 489

Query: 324 RAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVI 383
            A  V P + TF     A  AT ++  G++IH  +++    S+  + N L+ +Y KCG  
Sbjct: 490 LA-DVKPNSVTFIAALAACAATGSLRCGKEIHAHVLRQGIASEGYVPNALLDLYVKCGQT 548

Query: 384 DNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSAC 443
             A+  F    ++D+VSWN M+ GF  HG  +  L  F  MLE+G HP+ VTF+ +L  C
Sbjct: 549 GYAWAQFGAHGTKDVVSWNIMLAGFVAHGHGDIALSFFNEMLETGEHPDEVTFVALLCGC 608

Query: 444 SHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRI 503
           S AG+VS+GWELF++M + Y I P  +HY  M++LL R G++ E   F+ R+P  PD  +
Sbjct: 609 SRAGMVSQGWELFHSMTEKYSIVPNLKHYACMVDLLSRVGRLTEGYNFINRMPITPDAAV 668

Query: 504 WGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMG 563
           WGALL  C     N E+ E AAK +LEL+P +A  HV+L ++YA +G   E  K+R  M 
Sbjct: 669 WGALLNGCRI-HRNIELGELAAKIVLELEPNDAGYHVLLSDLYADAGMWAEVSKVRKTMR 727

Query: 564 LKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
           +KG+    GCSW+   G I  FL+ D+   Q+ EI
Sbjct: 728 VKGLEHDYGCSWVEVKGAIHAFLTDDESHPQIKEI 762



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 124/488 (25%), Positives = 190/488 (38%), Gaps = 130/488 (26%)

Query: 55  NGRLSEARRLFEEMPE----------------RNVVSWTAMICGLADAGRVCEARKLFEE 98
           +G L +A  L E  PE                R         CG ADA       +L   
Sbjct: 75  HGELQQALWLLESSPEPPDEDAYVALFHLCEWRRAAEHGLRACGHADAAHGTFGLRL--- 131

Query: 99  MPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLF 158
                    N+M+  L+R GE   A KVF  MP ++V SWN M+ GY +   + EA+ L+
Sbjct: 132 --------GNAMLSMLVRFGETWHAWKVFAKMPERDVFSWNVMVGGYGKAGFLEEALDLY 183

Query: 159 EEM----EERNVVTW-----------------------------------TSMISGYCRA 179
             M       +V T+                                    ++++ Y + 
Sbjct: 184 HRMLWAGARPDVYTFPCVLRSCGGVPDLTMGREVHAHVLRFGLGVEVDVLNALVTMYAKC 243

Query: 180 GEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEM---------------- 223
           G+VE    +F  M   + +SW AMI G   N   +  L LF+ M                
Sbjct: 244 GDVEAARKVFDGMSLTDCISWNAMIAGHFENHECEAGLELFLHMLEDEVEPNLMTITSVT 303

Query: 224 --KGICDN--------------GNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEI 267
              G+  +              G   +V  CNS+I  Y   GR+ EA  +F  +  RD +
Sbjct: 304 VASGLLSDLDFAKEIHALAVKRGFATDVAFCNSLIQMYSSLGRMGEACTVFSRMETRDAM 363

Query: 268 SWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHG 327
           SWT+MI GY   G            PD+                    A  ++  M  + 
Sbjct: 364 SWTAMISGYEKNG-----------FPDK--------------------ALEVYALMEVNN 392

Query: 328 VPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAY 387
           V P + T +    A  +   +D+G ++H +         +++ N L+ MYAK  +I+ A 
Sbjct: 393 VSPDDVTVASALAACASLGRLDVGIKLHELATSKGFIRYIVVANALVEMYAKSKIIEKAI 452

Query: 388 NIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAG 447
            +F  M  +D++SW+SM+ GF  +    E L  F  ML +   PNSVTF+  L+AC+  G
Sbjct: 453 EVFKYMPDKDVISWSSMIAGFCFNHKNFEALYYFRHML-ADVKPNSVTFIAALAACAATG 511

Query: 448 LVSRGWEL 455
            +  G E+
Sbjct: 512 SLRCGKEI 519



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 102/448 (22%), Positives = 188/448 (41%), Gaps = 51/448 (11%)

Query: 14  LTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLF----EEMP 69
           L + +T Y+K G ++ A+ +F  M   + +S+NAM++G  +N        LF    E+  
Sbjct: 233 LNALVTMYAKCGDVEAARKVFDGMSLTDCISWNAMIAGHFENHECEAGLELFLHMLEDEV 292

Query: 70  ERNVVSWTAMICGLADAGRVCEARKLFEEMPER----NVVSWNSMVVGLIRNGELNEARK 125
           E N+++ T++         +  A+++     +R    +V   NS++      G + EA  
Sbjct: 293 EPNLMTITSVTVASGLLSDLDFAKEIHALAVKRGFATDVAFCNSLIQMYSSLGRMGEACT 352

Query: 126 VFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNV------------------- 166
           VF+ M  ++ +SW AMI+GY +     +A+ ++  ME  NV                   
Sbjct: 353 VFSRMETRDAMSWTAMISGYEKNGFPDKALEVYALMEVNNVSPDDVTVASALAACASLGR 412

Query: 167 --------------------VTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGG 206
                               V   +++  Y ++  +E+   +F+ MP K+V+SW++MI G
Sbjct: 413 LDVGIKLHELATSKGFIRYIVVANALVEMYAKSKIIEKAIEVFKYMPDKDVISWSSMIAG 472

Query: 207 FAWNGFHKESLLLFIEM-KGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRD 265
           F +N  + E+L  F  M   +  N              G +R G+   A  L   +    
Sbjct: 473 FCFNHKNFEALYYFRHMLADVKPNSVTFIAALAACAATGSLRCGKEIHAHVLRQGIASEG 532

Query: 266 EISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRA 325
            +   +++D Y+  GQ   A+  F     +D V+W  M++G V +     A   F EM  
Sbjct: 533 YVP-NALLDLYVKCGQTGYAWAQFGAHGTKDVVSWNIMLAGFVAHGHGDIALSFFNEMLE 591

Query: 326 HGVPPLNATFSVLFGAAGATANIDLGRQI-HCVLMKTESESDLILENCLISMYAKCGVID 384
            G  P   TF  L         +  G ++ H +  K     +L    C++ + ++ G + 
Sbjct: 592 TGEHPDEVTFVALLCGCSRAGMVSQGWELFHSMTEKYSIVPNLKHYACMVDLLSRVGRLT 651

Query: 385 NAYNIFSNM-VSRDLVSWNSMVMGFSHH 411
             YN  + M ++ D   W +++ G   H
Sbjct: 652 EGYNFINRMPITPDAAVWGALLNGCRIH 679



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 89/348 (25%), Positives = 150/348 (43%), Gaps = 55/348 (15%)

Query: 11  VVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPE 70
           V    S I  YS  G + EA  +F  M  R+ +S+ AM+SG+ +NG   +A  ++  M  
Sbjct: 331 VAFCNSLIQMYSSLGRMGEACTVFSRMETRDAMSWTAMISGYEKNGFPDKALEVYALMEV 390

Query: 71  RNV----VSWTAMICGLADAGRVCEARKLFEEMPE----RNVVSWNSMVVGLIRNGELNE 122
            NV    V+  + +   A  GR+    KL E        R +V  N++V    ++  + +
Sbjct: 391 NNVSPDDVTVASALAACASLGRLDVGIKLHELATSKGFIRYIVVANALVEMYAKSKIIEK 450

Query: 123 ARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEM---EERNVVTW---------- 169
           A +VF  MP K+VISW++MIAG+       EA+  F  M    + N VT+          
Sbjct: 451 AIEVFKYMPDKDVISWSSMIAGFCFNHKNFEALYYFRHMLADVKPNSVTFIAALAACAAT 510

Query: 170 -------------------------TSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMI 204
                                     +++  Y + G+    +  F     K+VVSW  M+
Sbjct: 511 GSLRCGKEIHAHVLRQGIASEGYVPNALLDLYVKCGQTGYAWAQFGAHGTKDVVSWNIML 570

Query: 205 GGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVR 264
            GF  +G    +L  F EM    + G + +  +  +++ G  R G + +   LF ++  +
Sbjct: 571 AGFVAHGHGDIALSFFNEM---LETGEHPDEVTFVALLCGCSRAGMVSQGWELFHSMTEK 627

Query: 265 DEI-----SWTSMIDGYLSVGQVSNAYYLFHNMP-DRDAVAWTAMISG 306
             I      +  M+D    VG+++  Y   + MP   DA  W A+++G
Sbjct: 628 YSIVPNLKHYACMVDLLSRVGRLTEGYNFINRMPITPDAAVWGALLNG 675


>gi|297737809|emb|CBI27010.3| unnamed protein product [Vitis vinifera]
          Length = 481

 Score =  314 bits (805), Expect = 7e-83,   Method: Compositional matrix adjust.
 Identities = 172/480 (35%), Positives = 260/480 (54%), Gaps = 43/480 (8%)

Query: 120 LNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRA 179
           +  AR++F+ +P  N+  WN+M  GY +     E   +F EM ERNVV WTSMI+GY  +
Sbjct: 1   MTYARQLFDQIPDPNIALWNSMFRGYAQSESYRE---IFCEMFERNVVAWTSMINGYILS 57

Query: 180 GEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCN 239
            ++     LF   P ++VV W                                      N
Sbjct: 58  ADLVSARRLFDLAPERDVVLW--------------------------------------N 79

Query: 240 SMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVA 299
            M++GYI  G + EA+ LF  +P RD + W +++ GY + G V     LF  MP+R+  +
Sbjct: 80  IMVSGYIEGGDMVEARKLFHEMPNRDVMFWNTVLKGYATNGNVEALEGLFEEMPERNIFS 139

Query: 300 WTAMISGLVQNELFVEATYLFMEMRAHG-VPPLNATFSVLFGAAGATANIDLGRQIHCVL 358
           W A+I G   N LF E    F  M +   VPP +AT   +  A      +DLG+ +H   
Sbjct: 140 WNALIGGYAHNGLFFEVLGSFKRMLSESDVPPNDATLVTVLSACARLGALDLGKWVHVYA 199

Query: 359 MKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETL 418
             +  + ++ + N L+ MYAKCG+I+NA ++F  M ++DL+SWN+++ G + H    + L
Sbjct: 200 ESSGLKGNVYVGNALMDMYAKCGIIENAISVFRGMDTKDLISWNTLIGGLAMHSRGADAL 259

Query: 419 KVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINL 478
            +F  M  +G  P+ +TF+GIL AC+H GLV  G+  F +M D Y I P  EHY  M+++
Sbjct: 260 NLFFQMKNAGQKPDGITFIGILCACTHMGLVEDGFAYFQSMADDYLIMPQIEHYGCMVDM 319

Query: 479 LGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPA 538
           L RAG++++A  FV ++P E D  IW  LLGAC   + N E+AE A +RL+EL+P N   
Sbjct: 320 LARAGRLEQAMAFVRKMPVEADGVIWAGLLGACRIYK-NVELAELALQRLIELEPKNPAN 378

Query: 539 HVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
           +V+L NIY  +GR  +  +L++ M   G +K+PGCS +  N  +  F S D+   Q+ EI
Sbjct: 379 YVMLSNIYGDAGRWEDVARLKVAMRDTGFKKLPGCSLIEVNDAVVEFYSLDERHPQIEEI 438



 Score =  169 bits (427), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 111/363 (30%), Positives = 184/363 (50%), Gaps = 29/363 (7%)

Query: 58  LSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRN 117
           ++ AR+LF+++P+ N+  W +M  G A +      R++F EM ERNVV+W SM+ G I +
Sbjct: 1   MTYARQLFDQIPDPNIALWNSMFRGYAQSESY---REIFCEMFERNVVAWTSMINGYILS 57

Query: 118 GELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYC 177
            +L  AR++F+  P ++V+ WN M++GY+E   M EA  LF EM  R+V+ W +++ GY 
Sbjct: 58  ADLVSARRLFDLAPERDVVLWNIMVSGYIEGGDMVEARKLFHEMPNRDVMFWNTVLKGYA 117

Query: 178 RAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQS 237
             G VE    LF  MP +N+ SW A+IGG+A NG   E L  F  M  + ++    N  +
Sbjct: 118 TNGNVEALEGLFEEMPERNIFSWNALIGGYAHNGLFFEVLGSFKRM--LSESDVPPNDAT 175

Query: 238 CNSMINGYIRFGRLE---------EAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYL 288
             ++++   R G L+         E+  L   V V +     +++D Y   G + NA  +
Sbjct: 176 LVTVLSACARLGALDLGKWVHVYAESSGLKGNVYVGN-----ALMDMYAKCGIIENAISV 230

Query: 289 FHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANI 348
           F  M  +D ++W  +I GL  +    +A  LF +M+  G  P   TF  +  A      +
Sbjct: 231 FRGMDTKDLISWNTLIGGLAMHSRGADALNLFFQMKNAGQKPDGITFIGILCACTHMGLV 290

Query: 349 DLGRQIHCVLMKTESESDLILEN-----CLISMYAKCGVIDNAYNIFSNM-VSRDLVSWN 402
           + G        ++ ++  LI+       C++ M A+ G ++ A      M V  D V W 
Sbjct: 291 EDG----FAYFQSMADDYLIMPQIEHYGCMVDMLARAGRLEQAMAFVRKMPVEADGVIWA 346

Query: 403 SMV 405
            ++
Sbjct: 347 GLL 349



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 99/322 (30%), Positives = 157/322 (48%), Gaps = 29/322 (9%)

Query: 1   MSERNHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSE 60
           M ERN     VV  TS I  Y     +  A+ LF L P+R+VV +N M+SG+++ G + E
Sbjct: 39  MFERN-----VVAWTSMINGYILSADLVSARRLFDLAPERDVVLWNIMVSGYIEGGDMVE 93

Query: 61  ARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGEL 120
           AR+LF EMP R+V+ W  ++ G A  G V     LFEEMPERN+ SWN+++ G   NG  
Sbjct: 94  ARKLFHEMPNRDVMFWNTVLKGYATNGNVEALEGLFEEMPERNIFSWNALIGGYAHNGLF 153

Query: 121 NEARKVFNSMPIKNVISWN-AMIAGYVECCM------MGEAIVLFEEME--ERNVVTWTS 171
            E    F  M  ++ +  N A +   +  C       +G+ + ++ E    + NV    +
Sbjct: 154 FEVLGSFKRMLSESDVPPNDATLVTVLSACARLGALDLGKWVHVYAESSGLKGNVYVGNA 213

Query: 172 MISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMK------- 224
           ++  Y + G +E    +FR M  K+++SW  +IGG A +    ++L LF +MK       
Sbjct: 214 LMDMYAKCGIIENAISVFRGMDTKDLISWNTLIGGLAMHSRGADALNLFFQMKNAGQKPD 273

Query: 225 GICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEIS-WTSMIDGYLSVGQVS 283
           GI   G  C       + +G+  F      Q++ D   +  +I  +  M+D     G++ 
Sbjct: 274 GITFIGILCACTHMGLVEDGFAYF------QSMADDYLIMPQIEHYGCMVDMLARAGRLE 327

Query: 284 NAYYLFHNMP-DRDAVAWTAMI 304
            A      MP + D V W  ++
Sbjct: 328 QAMAFVRKMPVEADGVIWAGLL 349


>gi|357521583|ref|XP_003631080.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355525102|gb|AET05556.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 873

 Score =  314 bits (805), Expect = 7e-83,   Method: Compositional matrix adjust.
 Identities = 152/429 (35%), Positives = 256/429 (59%), Gaps = 7/429 (1%)

Query: 9   SLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEM 68
           + +V  T+SI+ + + G    A  +F  MP +N+ S+N ML+G+++N RL +AR LF+ M
Sbjct: 46  TYIVKCTNSISTHMRNGHCHLALRVFDSMPYKNLFSWNLMLTGYVKNRRLVDARNLFDLM 105

Query: 69  PERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFN 128
           P+++ VSW  M+ G   +G V EA+ +F+ MP ++ +SWN ++   ++NG L EAR++F 
Sbjct: 106 PQKDAVSWNVMLSGYVRSGCVDEAKLVFDNMPYKDSISWNGLLAVYVQNGRLEEARRLFE 165

Query: 129 SMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCL 188
           S     +ISWN ++ GYV+  M+G+A  LF+ M  RN ++W +MISGY R G++ +   L
Sbjct: 166 SKVDWELISWNCLMGGYVKRKMLGDARRLFDHMPVRNAISWNTMISGYARDGDLLQARRL 225

Query: 189 FRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRF 248
           F   P ++V +WTAM+  +  +G   E+  +F EM G  +        + N MI GY+++
Sbjct: 226 FEESPVRDVFTWTAMVFAYVQSGMLDEARRVFDEMPGKRE-------MAYNVMIAGYVQY 278

Query: 249 GRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLV 308
            +++ A+ LF+ +P R+  SW ++I GY   G ++ A  LF  M  RD V+W A+I+G  
Sbjct: 279 KKMDMARELFEAMPCRNVGSWNTIISGYGQNGDIAQARELFDMMTQRDCVSWAAIIAGYA 338

Query: 309 QNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLI 368
           Q   + +  ++ ++M+  G     +TF          A + LG+Q+H   +KT  ++  +
Sbjct: 339 QTGHYEKVMHMLVKMKRDGKSLNRSTFCCALSTCAGMAALVLGKQVHGQAVKTGYDNGCL 398

Query: 369 LENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESG 428
           + N L+ MY KCG I  AY++F  M  +D++SWN+M+ G++ HG   + L VF+SM  +G
Sbjct: 399 VGNALLEMYCKCGSIGEAYDVFERMQLKDIISWNTMLAGYARHGFGRQALLVFDSMKTAG 458

Query: 429 THPNSVTFL 437
             P+ +T L
Sbjct: 459 FKPDEITML 467



 Score =  275 bits (704), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 192/639 (30%), Positives = 304/639 (47%), Gaps = 96/639 (15%)

Query: 7   PKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFE 66
           P+   V     ++ Y + G +DEAK +F  MP ++ +S+N +L+ ++QNGRL EARRLFE
Sbjct: 106 PQKDAVSWNVMLSGYVRSGCVDEAKLVFDNMPYKDSISWNGLLAVYVQNGRLEEARRLFE 165

Query: 67  -------------------------------EMPERNVVSWTAMICGLADAGRVCEARKL 95
                                           MP RN +SW  MI G A  G + +AR+L
Sbjct: 166 SKVDWELISWNCLMGGYVKRKMLGDARRLFDHMPVRNAISWNTMISGYARDGDLLQARRL 225

Query: 96  FEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAI 155
           FEE P R+V +W +MV   +++G L+EAR+VF+ MP K  +++N MIAGYV+   M  A 
Sbjct: 226 FEESPVRDVFTWTAMVFAYVQSGMLDEARRVFDEMPGKREMAYNVMIAGYVQYKKMDMAR 285

Query: 156 VLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKE 215
            LFE M  RNV +W ++ISGY + G++ +   LF  M +++ VSW A+I G+A  G +++
Sbjct: 286 ELFEAMPCRNVGSWNTIISGYGQNGDIAQARELFDMMTQRDCVSWAAIIAGYAQTGHYEK 345

Query: 216 SLLLFIEMKGICDNGNN----CNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTS 271
            + + ++MK    + N     C + +C  M    +  G+    Q +  T      +   +
Sbjct: 346 VMHMLVKMKRDGKSLNRSTFCCALSTCAGM--AALVLGKQVHGQAV-KTGYDNGCLVGNA 402

Query: 272 MIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPL 331
           +++ Y   G +  AY +F  M  +D ++W  M++G  ++    +A  +F  M+  G  P 
Sbjct: 403 LLEMYCKCGSIGEAYDVFERMQLKDIISWNTMLAGYARHGFGRQALLVFDSMKTAGFKPD 462

Query: 332 NATFSV-----LFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKC----GV 382
             T  +     L           L   +    + + S ++   E  +  + + C     V
Sbjct: 463 EITMLIWSNNRLRKVGNTWVPTSLMNPLGNTWVTSTSVTEKQEERRVNRIGSVCITFLLV 522

Query: 383 IDNAYNIFSNMVSRDLVSW-----------NSMVMGFSHHGLANETLKVFESMLES-GTH 430
           I +AY    +       +W             +++  SH GL +   + F SM +  G  
Sbjct: 523 IISAYKYRLHACHLFPCNWLLSLYLTCIHNVGVLLACSHTGLTDRGTEYFYSMSKDYGIT 582

Query: 431 PNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEE 490
           PNS                    + +N M D                LLGRAG ++EA  
Sbjct: 583 PNS--------------------KHYNCMID----------------LLGRAGLLEEAHN 606

Query: 491 FVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASG 550
            +  +PFEPD   WGALLGA     GNAE+ E AA+ +  ++P NA  +V+L N+YA  G
Sbjct: 607 LMRNMPFEPDAATWGALLGASRI-HGNAELGEKAAEMVFNMEPNNAGMYVLLSNLYATLG 665

Query: 551 RHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGD 589
           + V+  KLR+ M   G++K+PG SW+     I  F  GD
Sbjct: 666 KWVDVGKLRLKMRQLGIQKIPGYSWVEVQNKIHKFTVGD 704



 Score =  186 bits (471), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 108/330 (32%), Positives = 172/330 (52%), Gaps = 15/330 (4%)

Query: 115 IRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMIS 174
           +RNG  + A +VF+SMP KN+ SWN M+ GYV+   + +A  LF+ M +++ V+W  M+S
Sbjct: 59  MRNGHCHLALRVFDSMPYKNLFSWNLMLTGYVKNRRLVDARNLFDLMPQKDAVSWNVMLS 118

Query: 175 GYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCN 234
           GY R+G V+E   +F  MP K+ +SW  ++  +  NG  +E+  LF       ++  +  
Sbjct: 119 GYVRSGCVDEAKLVFDNMPYKDSISWNGLLAVYVQNGRLEEARRLF-------ESKVDWE 171

Query: 235 VQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPD 294
           + S N ++ GY++   L +A+ LFD +PVR+ ISW +MI GY   G +  A  LF   P 
Sbjct: 172 LISWNCLMGGYVKRKMLGDARRLFDHMPVRNAISWNTMISGYARDGDLLQARRLFEESPV 231

Query: 295 RDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQI 354
           RD   WTAM+   VQ+ +  EA  +F EM           ++V+         +D+ R+ 
Sbjct: 232 RDVFTWTAMVFAYVQSGMLDEARRVFDEMPG----KREMAYNVMIAGYVQYKKMDMARE- 286

Query: 355 HCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLA 414
              L +     ++   N +IS Y + G I  A  +F  M  RD VSW +++ G++  G  
Sbjct: 287 ---LFEAMPCRNVGSWNTIISGYGQNGDIAQARELFDMMTQRDCVSWAAIIAGYAQTGHY 343

Query: 415 NETLKVFESMLESGTHPNSVTFLGILSACS 444
            + + +   M   G   N  TF   LS C+
Sbjct: 344 EKVMHMLVKMKRDGKSLNRSTFCCALSTCA 373


>gi|357142117|ref|XP_003572465.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Brachypodium distachyon]
          Length = 613

 Score =  314 bits (805), Expect = 8e-83,   Method: Compositional matrix adjust.
 Identities = 177/487 (36%), Positives = 267/487 (54%), Gaps = 10/487 (2%)

Query: 114 LIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMI 173
           ++R GE        N       I+   ++  Y  C  + +A  +F+ +  ++   + +MI
Sbjct: 119 MLREGEQVHVHVFKNGFQTDERIA-TTLVDLYARCGRLDDARRVFDRLLVKDAQLYNTMI 177

Query: 174 SGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNC 233
           + Y  AGEVE    LF  MP +N  +   M+GG++  G    +  +F    G+       
Sbjct: 178 AAYMEAGEVELAEELFEVMPERNTHTLMEMVGGYSARGDMDSAKHVFEMANGVV------ 231

Query: 234 NVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMID-GYLSVGQVSNAYYLFHNM 292
           N+  C +MI+G+ + G +++A+++FD +  RD  +W  MI   Y   G V +A  +F  M
Sbjct: 232 NMVLCTAMISGFAKTGSVDDARSVFDGMRQRDVATWNVMIGVMYAKCGLVEDARKVFDAM 291

Query: 293 PDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGR 352
           P+R+ V WT+MISG  Q   F +A  LF +M+  GV   +AT + +  + G    +DLGR
Sbjct: 292 PERNVVCWTSMISGYTQVGKFKQAVKLFRDMQISGVKADDATIATVVSSCGQMGALDLGR 351

Query: 353 QIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHG 412
            +H           + ++N LI MY+KCG I  A+ IF  +V RD  SW  M+MGF+ +G
Sbjct: 352 YVHAYCDVHGLGKGISVKNSLIDMYSKCGDIKKAHEIFRGLVKRDDFSWTVMIMGFAVNG 411

Query: 413 LANETLKVFESMLESG-THPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEH 471
           L+ E L +F  M E G   PN +TFLG+L++CSH GLV +G+  F+ M  VY I P  EH
Sbjct: 412 LSGEALDLFAQMEEEGEVMPNEITFLGVLTSCSHGGLVEQGYHHFHRMSKVYGIAPRIEH 471

Query: 472 YVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLEL 531
           Y  M++LLGRA  + EAE+F+  +P  PD  IW +LL AC    G   +AE+ A+R+ EL
Sbjct: 472 YGCMVDLLGRAKLLAEAEQFIEEMPIAPDVAIWRSLLFAC-RARGEVGLAEYVAERVEEL 530

Query: 532 DPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKI 591
           +P     +V+L N+YA + R V+ +K+R  MG   V K PGCS +  NG    FLSGD+ 
Sbjct: 531 EPSRCGGNVLLSNVYATTSRWVDVNKVRTGMGRSRVSKRPGCSVIEVNGCAHEFLSGDET 590

Query: 592 PAQVAEI 598
             +   I
Sbjct: 591 HLETEAI 597



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 96/325 (29%), Positives = 168/325 (51%), Gaps = 9/325 (2%)

Query: 15  TSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVV 74
           T+ +  Y++ G +D+A+ +F  +  ++   YN M++ +++ G +  A  LFE MPERN  
Sbjct: 143 TTLVDLYARCGRLDDARRVFDRLLVKDAQLYNTMIAAYMEAGEVELAEELFEVMPERNTH 202

Query: 75  SWTAMICGLADAGRVCEARKLFEEMPE-RNVVSWNSMVVGLIRNGELNEARKVFNSMPIK 133
           +   M+ G +  G +  A+ +FE      N+V   +M+ G  + G +++AR VF+ M  +
Sbjct: 203 TLMEMVGGYSARGDMDSAKHVFEMANGVVNMVLCTAMISGFAKTGSVDDARSVFDGMRQR 262

Query: 134 NVISWNAMIA-GYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRM 192
           +V +WN MI   Y +C ++ +A  +F+ M ERNVV WTSMISGY + G+ ++   LFR M
Sbjct: 263 DVATWNVMIGVMYAKCGLVEDARKVFDAMPERNVVCWTSMISGYTQVGKFKQAVKLFRDM 322

Query: 193 PRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICD-NGNNCNVQSCNSMINGYIRFGRL 251
               V +  A I     +     +L L   +   CD +G    +   NS+I+ Y + G +
Sbjct: 323 QISGVKADDATIATVVSSCGQMGALDLGRYVHAYCDVHGLGKGISVKNSLIDMYSKCGDI 382

Query: 252 EEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDR-----DAVAWTAMISG 306
           ++A  +F  +  RD+ SWT MI G+   G    A  LF  M +      + + +  +++ 
Sbjct: 383 KKAHEIFRGLVKRDDFSWTVMIMGFAVNGLSGEALDLFAQMEEEGEVMPNEITFLGVLTS 442

Query: 307 LVQNELFVEATYLFMEM-RAHGVPP 330
                L  +  + F  M + +G+ P
Sbjct: 443 CSHGGLVEQGYHHFHRMSKVYGIAP 467



 Score =  149 bits (375), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 110/374 (29%), Positives = 180/374 (48%), Gaps = 20/374 (5%)

Query: 52  FLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMV 111
           + + GRL +ARR+F+ +  ++   +  MI    +AG V  A +LFE MPERN  +   MV
Sbjct: 149 YARCGRLDDARRVFDRLLVKDAQLYNTMIAAYMEAGEVELAEELFEVMPERNTHTLMEMV 208

Query: 112 VGLIRNGELNEARKVFN-SMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWT 170
            G    G+++ A+ VF  +  + N++   AMI+G+ +   + +A  +F+ M +R+V TW 
Sbjct: 209 GGYSARGDMDSAKHVFEMANGVVNMVLCTAMISGFAKTGSVDDARSVFDGMRQRDVATWN 268

Query: 171 SMIS-GYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMK--GI- 226
            MI   Y + G VE+   +F  MP +NVV WT+MI G+   G  K+++ LF +M+  G+ 
Sbjct: 269 VMIGVMYAKCGLVEDARKVFDAMPERNVVCWTSMISGYTQVGKFKQAVKLFRDMQISGVK 328

Query: 227 CDNGNNCN-VQSCNSMINGYIRFGRLEEA----QNLFDTVPVRDEISWTSMIDGYLSVGQ 281
            D+      V SC  M  G +  GR   A      L   + V++     S+ID Y   G 
Sbjct: 329 ADDATIATVVSSCGQM--GALDLGRYVHAYCDVHGLGKGISVKN-----SLIDMYSKCGD 381

Query: 282 VSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHG-VPPLNATFSVLFG 340
           +  A+ +F  +  RD  +WT MI G   N L  EA  LF +M   G V P   TF  +  
Sbjct: 382 IKKAHEIFRGLVKRDDFSWTVMIMGFAVNGLSGEALDLFAQMEEEGEVMPNEITFLGVLT 441

Query: 341 AAGATANIDLGRQIHCVLMKTESESDLILE-NCLISMYAKCGVIDNAYNIFSNM-VSRDL 398
           +      ++ G      + K    +  I    C++ +  +  ++  A      M ++ D+
Sbjct: 442 SCSHGGLVEQGYHHFHRMSKVYGIAPRIEHYGCMVDLLGRAKLLAEAEQFIEEMPIAPDV 501

Query: 399 VSWNSMVMGFSHHG 412
             W S++      G
Sbjct: 502 AIWRSLLFACRARG 515



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 108/369 (29%), Positives = 170/369 (46%), Gaps = 56/369 (15%)

Query: 1   MSERNHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQR-NVVSYNAMLSGFLQNGRLS 59
           M ERN        L   +  YS RG +D AK +F++     N+V   AM+SGF + G + 
Sbjct: 196 MPERNTHT-----LMEMVGGYSARGDMDSAKHVFEMANGVVNMVLCTAMISGFAKTGSVD 250

Query: 60  EARRLFEEMPERNVVSWTAMICGL-ADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNG 118
           +AR +F+ M +R+V +W  MI  + A  G V +ARK+F+ MPERNVV W SM+ G  + G
Sbjct: 251 DARSVFDGMRQRDVATWNVMIGVMYAKCGLVEDARKVFDAMPERNVVCWTSMISGYTQVG 310

Query: 119 ELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEE--------RNVVTWT 170
           +  +A K+F  M I  V + +A IA  V  C    A+ L   +          + +    
Sbjct: 311 KFKQAVKLFRDMQISGVKADDATIATVVSSCGQMGALDLGRYVHAYCDVHGLGKGISVKN 370

Query: 171 SMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNG 230
           S+I  Y + G++++ + +FR + +++  SWT MI GFA NG   E+L LF +M+      
Sbjct: 371 SLIDMYSKCGDIKKAHEIFRGLVKRDDFSWTVMIMGFAVNGLSGEALDLFAQME------ 424

Query: 231 NNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFH 290
                                EE +     +P  +EI++  ++      G V   Y+ FH
Sbjct: 425 ---------------------EEGE----VMP--NEITFLGVLTSCSHGGLVEQGYHHFH 457

Query: 291 NMPDRDAVA-----WTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGAT 345
            M     +A     +  M+  L + +L  EA     EM    + P  A +  L  A  A 
Sbjct: 458 RMSKVYGIAPRIEHYGCMVDLLGRAKLLAEAEQFIEEM---PIAPDVAIWRSLLFACRAR 514

Query: 346 ANIDLGRQI 354
             + L   +
Sbjct: 515 GEVGLAEYV 523



 Score = 69.3 bits (168), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 60/257 (23%), Positives = 107/257 (41%), Gaps = 20/257 (7%)

Query: 316 ATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLIS 375
           A Y  M     GV PL  T S +  AA     +  G Q+H  + K   ++D  +   L+ 
Sbjct: 88  ALYAQMHRGCPGVRPLTFTVSSVLKAAARREMLREGEQVHVHVFKNGFQTDERIATTLVD 147

Query: 376 MYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVT 435
           +YA+CG +D+A  +F  ++ +D   +N+M+  +   G      ++FE M E  TH   + 
Sbjct: 148 LYARCGRLDDARRVFDRLLVKDAQLYNTMIAAYMEAGEVELAEELFEVMPERNTH-TLME 206

Query: 436 FLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRL 495
            +G  SA          +E+ N + ++           +MI+   + G + +A   V   
Sbjct: 207 MVGGYSARGDMDSAKHVFEMANGVVNMVLC-------TAMISGFAKTGSVDDARS-VFDG 258

Query: 496 PFEPDHRIWGALLGA----CGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGR 551
             + D   W  ++G     CG  E   ++ +   +R       N      + + Y   G+
Sbjct: 259 MRQRDVATWNVMIGVMYAKCGLVEDARKVFDAMPER-------NVVCWTSMISGYTQVGK 311

Query: 552 HVEEHKLRMDMGLKGVR 568
             +  KL  DM + GV+
Sbjct: 312 FKQAVKLFRDMQISGVK 328


>gi|222625627|gb|EEE59759.1| hypothetical protein OsJ_12247 [Oryza sativa Japonica Group]
          Length = 950

 Score =  314 bits (805), Expect = 8e-83,   Method: Compositional matrix adjust.
 Identities = 188/618 (30%), Positives = 322/618 (52%), Gaps = 64/618 (10%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWT 77
           + ++ K G I  A+ LF  MP+R+VVSY  M+   ++ G + +A  L+ + P  +V  +T
Sbjct: 155 VREHVKAGDIVSARRLFDGMPERSVVSYTTMVDALMKRGSVRDAVELYRQCPLCSVPFFT 214

Query: 78  AMICGLADAGRVCEARKLFEEM------P------------------------------- 100
           AMI G        +A  +F EM      P                               
Sbjct: 215 AMIAGFVLNELPKDALGVFHEMLSCGVSPNEITLVSVIKACIGAGEFDLAMSIVGLAMKS 274

Query: 101 ---ERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVL 157
              ++N+   NS++   +R G+ + AR++F+ M +++V+SW A++  Y E   +  A  +
Sbjct: 275 NLLDKNLGVRNSLITLYLRKGDADAARRMFDEMEVRDVVSWTALLDVYAELGDLEGARRV 334

Query: 158 FEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRM----PRKNVVSWTAMIGGFA----- 208
            +EM ERN V+W ++++ + + G  +E   L+ +M     R N+  +++++G  A     
Sbjct: 335 LDEMPERNEVSWGTLVARHEQKGNAKEAVSLYSQMLADGCRPNISCFSSVLGACASLQDL 394

Query: 209 --WNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDE 266
                 H ++L      K  C N    NV   +++I+ Y +  +L +AQ +F ++P ++ 
Sbjct: 395 RSGRKIHNQTL------KMACSN----NVFVSSALIDMYCKCKQLPDAQMIFYSLPQKNI 444

Query: 267 ISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAH 326
           + W S+I GY +  ++  A  LF  MP R+  +W ++ISG  QN  F++A   F  M A 
Sbjct: 445 VCWNSLISGYSNNSKMVEAEELFKKMPARNVASWNSIISGYAQNRQFIDALKSFHAMLAS 504

Query: 327 GVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNA 386
           G  P   TFS +  A  +  ++++G+ +H  ++K   +  + +   L  MYAK G +D++
Sbjct: 505 GQSPGEITFSSVLLACASLCSLEMGKMVHAKIIKLGIKESIFVGTALSDMYAKSGDLDSS 564

Query: 387 YNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHA 446
             +F  M  R+ V+W +M+ G + +G A E++ +FE M+ +G  PN  TFL IL ACSH+
Sbjct: 565 KRVFYEMPKRNDVAWTAMIQGLAENGFAEESILLFEDMISAGITPNEQTFLAILFACSHS 624

Query: 447 GLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGA 506
           GLV      F  M     I P  +HY  M+++L RAG + EAE+ +L++  + +   W A
Sbjct: 625 GLVEHAMHYFE-MMQACGISPKAKHYTCMVDVLARAGHLAEAEDLLLKIESKSEANSWAA 683

Query: 507 LLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKG 566
           LL AC     N E+ E AAKRL ELD  N   +V+L N+YA+ G+  +  ++R+ M    
Sbjct: 684 LLSACNIYR-NKEMGERAAKRLQELDKDNTAGYVLLSNMYASCGKWKDAAEMRILMKGIN 742

Query: 567 VRKVPGCSWL-MRNGGIQ 583
           ++K  GCSW+ +R+  +Q
Sbjct: 743 LKKDGGCSWVQIRDEQLQ 760



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 79/303 (26%), Positives = 133/303 (43%), Gaps = 38/303 (12%)

Query: 241 MINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAW 300
           M+  +++ G +  A+ LFD +P R  +S+T+M+D  +  G V +A  L+   P      +
Sbjct: 154 MVREHVKAGDIVSARRLFDGMPERSVVSYTTMVDALMKRGSVRDAVELYRQCPLCSVPFF 213

Query: 301 TAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMK 360
           TAMI+G V NEL  +A  +F EM + GV P   T   +  A       DL   I  + MK
Sbjct: 214 TAMIAGFVLNELPKDALGVFHEMLSCGVSPNEITLVSVIKACIGAGEFDLAMSIVGLAMK 273

Query: 361 TE-SESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWN----------------- 402
           +   + +L + N LI++Y + G  D A  +F  M  RD+VSW                  
Sbjct: 274 SNLLDKNLGVRNSLITLYLRKGDADAARRMFDEMEVRDVVSWTALLDVYAELGDLEGARR 333

Query: 403 --------------SMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGL 448
                         ++V      G A E + ++  ML  G  PN   F  +L AC+    
Sbjct: 334 VLDEMPERNEVSWGTLVARHEQKGNAKEAVSLYSQMLADGCRPNISCFSSVLGACASLQD 393

Query: 449 VSRGWELFNAMFDVYKIQPGPEHYVS--MINLLGRAGKIKEAEEFVLRLPFEPDHRIWGA 506
           +  G ++ N      K+      +VS  +I++  +  ++ +A+     LP + +   W +
Sbjct: 394 LRSGRKIHN---QTLKMACSNNVFVSSALIDMYCKCKQLPDAQMIFYSLP-QKNIVCWNS 449

Query: 507 LLG 509
           L+ 
Sbjct: 450 LIS 452


>gi|357165485|ref|XP_003580399.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Brachypodium distachyon]
          Length = 886

 Score =  314 bits (805), Expect = 8e-83,   Method: Compositional matrix adjust.
 Identities = 185/585 (31%), Positives = 308/585 (52%), Gaps = 13/585 (2%)

Query: 25  GFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLA 84
           G +D A   F  +    ++  N+ML G+ ++  +  A  +F+ MPER+VVSW  +I  L+
Sbjct: 208 GAMDFASKQFSRIKNPTIICRNSMLVGYAKSHGVDHALEIFKSMPERDVVSWNMVISALS 267

Query: 85  DAGRVCEARKLFEEMPERNV----VSWNSMVVGLIRNGELNEARK----VFNSMPIKNVI 136
            +GRV EA  +  +M  + V     ++ S +    R   L   ++    V  ++P  +  
Sbjct: 268 KSGRVREALDMVVDMHGKGVRPDSTTYTSSLTACARLSSLEWGKQLHVQVIRNLPHIDPY 327

Query: 137 SWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKN 196
             +AM+  Y +C    EA  +F  + +RN V+WT +I G+ + G   E   LF +M  + 
Sbjct: 328 VASAMVELYAKCGCFKEAKRVFSSLRDRNSVSWTVLIGGFLQYGCFSESVELFNQMRAEL 387

Query: 197 VVSWTAMIGGFAWNGFHKESLLLFIEMKGIC-DNGNNCNVQSCNSMINGYIRFGRLEEAQ 255
           +      +        +   + L  ++  +C  +G+   V   NS+I+ Y + G L+ A+
Sbjct: 388 MAVDQFALATLISGCCNTMDICLGSQLHSLCLKSGHTRAVVVSNSLISMYAKCGNLQNAE 447

Query: 256 NLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVE 315
            +F+ +  RD +SWT MI  Y  VG ++ A   F +M  R+ + W AM+   +Q+    +
Sbjct: 448 LIFNFMAERDIVSWTGMITAYSQVGNIAKAREFFDDMSTRNVITWNAMLGAYIQHGAEED 507

Query: 316 ATYLFMEMRAH-GVPPLNATFSVLF-GAAGATANIDLGRQIHCVLMKTESESDLILENCL 373
              ++ +M     V P   T+  LF G A   AN  LG QI    +K     D  + N +
Sbjct: 508 GLKMYSDMLTEKDVIPDWVTYVTLFRGCADIGAN-KLGDQIIGHTVKVGLILDTSVVNAV 566

Query: 374 ISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNS 433
           I+MY+KCG I  A   F  +  +DLVSWN+M+ G+S HG+  + +++F+ +L  G  P+ 
Sbjct: 567 ITMYSKCGRISEARKAFDFLSRKDLVSWNAMITGYSQHGMGKQAIEIFDDILNKGAKPDY 626

Query: 434 VTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVL 493
           ++++ +LS CSH+GLV  G   F+ M   + I PG EH+  M++LLGRAG + EA+  + 
Sbjct: 627 ISYVAVLSGCSHSGLVEEGKFYFDMMKRDHNISPGLEHFSCMVDLLGRAGHLIEAKNLID 686

Query: 494 RLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHV 553
            +P +P   +WGALL AC    GN ++AE AAK L +LD   +  +++L  +YA +G+  
Sbjct: 687 EMPMKPTAEVWGALLSACK-THGNNDLAELAAKHLFDLDSPGSGGYMLLAKMYADAGKSD 745

Query: 554 EEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
           +  ++R  M  KG++K PG SW+  N  + +F + D    QV  I
Sbjct: 746 DSAQVRKLMRDKGIKKSPGYSWMEVNNRVHVFKAEDVSHPQVIAI 790



 Score =  186 bits (473), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 130/488 (26%), Positives = 229/488 (46%), Gaps = 25/488 (5%)

Query: 21  YSKRGFIDEAKALFQ-LMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAM 79
           Y   G + +A+ L +  + + NV+++N M++G+ + G LS+A  LF  MP R+V SW  +
Sbjct: 70  YLSCGALSDARNLLRDEITEPNVITHNIMMNGYAKLGSLSDAVELFGRMPTRDVASWNTI 129

Query: 80  ICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNG-----------ELNEARKVFN 128
           + G   +G+   A  +F  M +      N+   G +              +L      F+
Sbjct: 130 MSGYYQSGQFLNALDIFVSMRQTGDSLPNAFTFGCVMKSCGALGWHEVALQLLGLLSKFD 189

Query: 129 SMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCL 188
           S    +V +  A++   V C  M  A   F  ++   ++   SM+ GY ++  V+    +
Sbjct: 190 SQDDPDVQT--ALVDMLVRCGAMDFASKQFSRIKNPTIICRNSMLVGYAKSHGVDHALEI 247

Query: 189 FRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRF 248
           F+ MP ++VVSW  +I   + +G  +E+L + ++M G    G   +  +  S +    R 
Sbjct: 248 FKSMPERDVVSWNMVISALSKSGRVREALDMVVDMHG---KGVRPDSTTYTSSLTACARL 304

Query: 249 GRLEEAQNLFDTV----PVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMI 304
             LE  + L   V    P  D    ++M++ Y   G    A  +F ++ DR++V+WT +I
Sbjct: 305 SSLEWGKQLHVQVIRNLPHIDPYVASAMVELYAKCGCFKEAKRVFSSLRDRNSVSWTVLI 364

Query: 305 SGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESE 364
            G +Q   F E+  LF +MRA  +       + L      T +I LG Q+H + +K+   
Sbjct: 365 GGFLQYGCFSESVELFNQMRAELMAVDQFALATLISGCCNTMDICLGSQLHSLCLKSGHT 424

Query: 365 SDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESM 424
             +++ N LISMYAKCG + NA  IF+ M  RD+VSW  M+  +S  G   +  + F+ M
Sbjct: 425 RAVVVSNSLISMYAKCGNLQNAELIFNFMAERDIVSWTGMITAYSQVGNIAKAREFFDDM 484

Query: 425 LESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGK 484
               +  N +T+  +L A    G    G ++++ M     + P    YV++       G 
Sbjct: 485 ----STRNVITWNAMLGAYIQHGAEEDGLKMYSDMLTEKDVIPDWVTYVTLFRGCADIGA 540

Query: 485 IKEAEEFV 492
            K  ++ +
Sbjct: 541 NKLGDQII 548



 Score =  148 bits (373), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 111/475 (23%), Positives = 208/475 (43%), Gaps = 64/475 (13%)

Query: 74  VSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIK 133
            S  A+   LADA R C AR                        G      ++ N     
Sbjct: 19  TSHMAITQALADALRSCGARSAL--------------------TGARTLHSRLINVGLAS 58

Query: 134 NVISWNAMIAGYVECCMMGEAI-VLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRM 192
            V   N ++  Y+ C  + +A  +L +E+ E NV+T   M++GY + G + +   LF RM
Sbjct: 59  VVFLQNTLLHAYLSCGALSDARNLLRDEITEPNVITHNIMMNGYAKLGSLSDAVELFGRM 118

Query: 193 PRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNN-----CNVQSC--------- 238
           P ++V SW  ++ G+  +G    +L +F+ M+   D+  N     C ++SC         
Sbjct: 119 PTRDVASWNTIMSGYYQSGQFLNALDIFVSMRQTGDSLPNAFTFGCVMKSCGALGWHEVA 178

Query: 239 -------------------NSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSV 279
                               ++++  +R G ++ A   F  +     I   SM+ GY   
Sbjct: 179 LQLLGLLSKFDSQDDPDVQTALVDMLVRCGAMDFASKQFSRIKNPTIICRNSMLVGYAKS 238

Query: 280 GQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLF 339
             V +A  +F +MP+RD V+W  +IS L ++    EA  + ++M   GV P + T++   
Sbjct: 239 HGVDHALEIFKSMPERDVVSWNMVISALSKSGRVREALDMVVDMHGKGVRPDSTTYTSSL 298

Query: 340 GAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLV 399
            A    ++++ G+Q+H  +++     D  + + ++ +YAKCG    A  +FS++  R+ V
Sbjct: 299 TACARLSSLEWGKQLHVQVIRNLPHIDPYVASAMVELYAKCGCFKEAKRVFSSLRDRNSV 358

Query: 400 SWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAM 459
           SW  ++ GF  +G  +E++++F  M       +      ++S C +   +  G +L +  
Sbjct: 359 SWTVLIGGFLQYGCFSESVELFNQMRAELMAVDQFALATLISGCCNTMDICLGSQLHSLC 418

Query: 460 FDVYKIQPGPEHYV----SMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGA 510
                ++ G    V    S+I++  + G ++ A E +     E D   W  ++ A
Sbjct: 419 -----LKSGHTRAVVVSNSLISMYAKCGNLQNA-ELIFNFMAERDIVSWTGMITA 467



 Score =  139 bits (350), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 102/361 (28%), Positives = 170/361 (47%), Gaps = 24/361 (6%)

Query: 4   RNHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARR 63
           RN P       ++ +  Y+K G   EAK +F  +  RN VS+  ++ GFLQ G  SE+  
Sbjct: 319 RNLPHIDPYVASAMVELYAKCGCFKEAKRVFSSLRDRNSVSWTVLIGGFLQYGCFSESVE 378

Query: 64  LFEEMPER----NVVSWTAMICGLADAGRVCEARKL----FEEMPERNVVSWNSMVVGLI 115
           LF +M       +  +   +I G  +   +C   +L     +    R VV  NS++    
Sbjct: 379 LFNQMRAELMAVDQFALATLISGCCNTMDICLGSQLHSLCLKSGHTRAVVVSNSLISMYA 438

Query: 116 RNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISG 175
           + G L  A  +FN M  ++++SW  MI  Y +   + +A   F++M  RNV+TW +M+  
Sbjct: 439 KCGNLQNAELIFNFMAERDIVSWTGMITAYSQVGNIAKAREFFDDMSTRNVITWNAMLGA 498

Query: 176 YCRAGEVEEGYCLFRRM-PRKNV----VSWTAMIGGFAWNGFHKESLLLFIEMKGICDNG 230
           Y + G  E+G  ++  M   K+V    V++  +  G A  G +K    +      +   G
Sbjct: 499 YIQHGAEEDGLKMYSDMLTEKDVIPDWVTYVTLFRGCADIGANKLGDQIIGHTVKV---G 555

Query: 231 NNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFH 290
              +    N++I  Y + GR+ EA+  FD +  +D +SW +MI GY   G    A  +F 
Sbjct: 556 LILDTSVVNAVITMYSKCGRISEARKAFDFLSRKDLVSWNAMITGYSQHGMGKQAIEIFD 615

Query: 291 NMPDR----DAVAWTAMISGLVQNELFVEATYLF-MEMRAHGVPPLNATFSV---LFGAA 342
           ++ ++    D +++ A++SG   + L  E  + F M  R H + P    FS    L G A
Sbjct: 616 DILNKGAKPDYISYVAVLSGCSHSGLVEEGKFYFDMMKRDHNISPGLEHFSCMVDLLGRA 675

Query: 343 G 343
           G
Sbjct: 676 G 676



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 74/275 (26%), Positives = 144/275 (52%), Gaps = 16/275 (5%)

Query: 3   ERNHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEAR 62
           +  H +++VV   S I+ Y+K G +  A+ +F  M +R++VS+  M++ + Q G +++AR
Sbjct: 420 KSGHTRAVVVS-NSLISMYAKCGNLQNAELIFNFMAERDIVSWTGMITAYSQVGNIAKAR 478

Query: 63  RLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEM-PERNVVSWNSMVVGLIRNGELN 121
             F++M  RNV++W AM+      G   +  K++ +M  E++V+      V L R     
Sbjct: 479 EFFDDMSTRNVITWNAMLGAYIQHGAEEDGLKMYSDMLTEKDVIPDWVTYVTLFRGCADI 538

Query: 122 EARKVFNSMP--------IKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMI 173
            A K+ + +         I +    NA+I  Y +C  + EA   F+ +  +++V+W +MI
Sbjct: 539 GANKLGDQIIGHTVKVGLILDTSVVNAVITMYSKCGRISEARKAFDFLSRKDLVSWNAMI 598

Query: 174 SGYCRAGEVEEGYCLFRRMPRK----NVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDN 229
           +GY + G  ++   +F  +  K    + +S+ A++ G + +G  +E    F  MK   D+
Sbjct: 599 TGYSQHGMGKQAIEIFDDILNKGAKPDYISYVAVLSGCSHSGLVEEGKFYFDMMKR--DH 656

Query: 230 GNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVR 264
             +  ++  + M++   R G L EA+NL D +P++
Sbjct: 657 NISPGLEHFSCMVDLLGRAGHLIEAKNLIDEMPMK 691


>gi|218193589|gb|EEC76016.1| hypothetical protein OsI_13171 [Oryza sativa Indica Group]
          Length = 950

 Score =  314 bits (805), Expect = 8e-83,   Method: Compositional matrix adjust.
 Identities = 188/618 (30%), Positives = 322/618 (52%), Gaps = 64/618 (10%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWT 77
           + ++ K G I  A+ LF  MP+R+VVSY  M+   ++ G + +A  L+ + P  +V  +T
Sbjct: 155 VREHVKAGDIVSARRLFDGMPERSVVSYTTMVDALMKRGSVRDAVELYRQCPLCSVPFFT 214

Query: 78  AMICGLADAGRVCEARKLFEEM------P------------------------------- 100
           AMI G        +A  +F EM      P                               
Sbjct: 215 AMIAGFVLNELPKDALGVFHEMLSCGVSPNEITLVSVIKACIGAGEFDLAMSIVGLAMKS 274

Query: 101 ---ERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVL 157
              ++N+   NS++   +R G+ + AR++F+ M +++V+SW A++  Y E   +  A  +
Sbjct: 275 NLLDKNLGVRNSLITLYLRKGDADAARRMFDEMEVRDVVSWTALLDVYAELGDLEGARRV 334

Query: 158 FEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRM----PRKNVVSWTAMIGGFA----- 208
            +EM ERN V+W ++++ + + G  +E   L+ +M     R N+  +++++G  A     
Sbjct: 335 LDEMPERNEVSWGTLVARHEQKGNAKEAVSLYSQMLADGCRPNISCFSSVLGACASLQDL 394

Query: 209 --WNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDE 266
                 H ++L      K  C N    NV   +++I+ Y +  +L +AQ +F ++P ++ 
Sbjct: 395 RSGRKIHNQTL------KMACSN----NVFVSSALIDMYCKCKQLPDAQMIFYSLPQKNI 444

Query: 267 ISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAH 326
           + W S+I GY +  ++  A  LF  MP R+  +W ++ISG  QN  F++A   F  M A 
Sbjct: 445 VCWNSLISGYSNNSKMVEAEELFKKMPARNVASWNSIISGYAQNRQFIDALKSFHAMLAS 504

Query: 327 GVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNA 386
           G  P   TFS +  A  +  ++++G+ +H  ++K   +  + +   L  MYAK G +D++
Sbjct: 505 GQSPGEITFSSVLLACASLCSLEMGKMVHAKIIKLGIKESIFVGTALSDMYAKSGDLDSS 564

Query: 387 YNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHA 446
             +F  M  R+ V+W +M+ G + +G A E++ +FE M+ +G  PN  TFL IL ACSH+
Sbjct: 565 KRVFYEMPKRNDVAWTAMIQGLAENGFAEESILLFEDMISAGITPNEQTFLAILFACSHS 624

Query: 447 GLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGA 506
           GLV      F  M     I P  +HY  M+++L RAG + EAE+ +L++  + +   W A
Sbjct: 625 GLVEHAMHYFE-MMQACGISPKAKHYTCMVDVLARAGHLAEAEDLLLKIESKSEANSWAA 683

Query: 507 LLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKG 566
           LL AC     N E+ E AAKRL ELD  N   +V+L N+YA+ G+  +  ++R+ M    
Sbjct: 684 LLSACNIYR-NKEMGERAAKRLQELDKDNTAGYVLLSNMYASCGKWKDAAEMRILMKGIN 742

Query: 567 VRKVPGCSWL-MRNGGIQ 583
           ++K  GCSW+ +R+  +Q
Sbjct: 743 LKKDGGCSWVQIRDEQLQ 760



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 79/303 (26%), Positives = 133/303 (43%), Gaps = 38/303 (12%)

Query: 241 MINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAW 300
           M+  +++ G +  A+ LFD +P R  +S+T+M+D  +  G V +A  L+   P      +
Sbjct: 154 MVREHVKAGDIVSARRLFDGMPERSVVSYTTMVDALMKRGSVRDAVELYRQCPLCSVPFF 213

Query: 301 TAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMK 360
           TAMI+G V NEL  +A  +F EM + GV P   T   +  A       DL   I  + MK
Sbjct: 214 TAMIAGFVLNELPKDALGVFHEMLSCGVSPNEITLVSVIKACIGAGEFDLAMSIVGLAMK 273

Query: 361 TE-SESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWN----------------- 402
           +   + +L + N LI++Y + G  D A  +F  M  RD+VSW                  
Sbjct: 274 SNLLDKNLGVRNSLITLYLRKGDADAARRMFDEMEVRDVVSWTALLDVYAELGDLEGARR 333

Query: 403 --------------SMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGL 448
                         ++V      G A E + ++  ML  G  PN   F  +L AC+    
Sbjct: 334 VLDEMPERNEVSWGTLVARHEQKGNAKEAVSLYSQMLADGCRPNISCFSSVLGACASLQD 393

Query: 449 VSRGWELFNAMFDVYKIQPGPEHYVS--MINLLGRAGKIKEAEEFVLRLPFEPDHRIWGA 506
           +  G ++ N      K+      +VS  +I++  +  ++ +A+     LP + +   W +
Sbjct: 394 LRSGRKIHN---QTLKMACSNNVFVSSALIDMYCKCKQLPDAQMIFYSLP-QKNIVCWNS 449

Query: 507 LLG 509
           L+ 
Sbjct: 450 LIS 452


>gi|302816499|ref|XP_002989928.1| hypothetical protein SELMODRAFT_130658 [Selaginella moellendorffii]
 gi|300142239|gb|EFJ08941.1| hypothetical protein SELMODRAFT_130658 [Selaginella moellendorffii]
          Length = 818

 Score =  314 bits (804), Expect = 9e-83,   Method: Compositional matrix adjust.
 Identities = 193/662 (29%), Positives = 337/662 (50%), Gaps = 82/662 (12%)

Query: 18  ITKYSKRGFIDEAKALFQLMP--QRNVVSYNAMLSGFLQNGRLSEARRLF---------- 65
           I+ Y K   + +A+++F+ M   QRNVVS+NAM++ + QNG  +EA  L+          
Sbjct: 49  ISMYGKCDSLVDARSVFESMDWRQRNVVSWNAMIAAYAQNGHSTEALVLYWRMNLQGLGT 108

Query: 66  ------------------EEMPERNVVSWTAMICGLADA--------GRVCEARKLFEEM 99
                              E+  R   S       LA+A        G V +A+++F+ +
Sbjct: 109 DHVTFVSVLGACSSLAQGREIHNRVFYSGLDSFQSLANALVTMYARFGSVGDAKRMFQSL 168

Query: 100 PERNVVSWNSMVVGLIRNGELNEARKVFNSMPIK---NVISWNAMIAGYVECCMMGEAIV 156
             R+  SWN++++   ++G+ + A ++F  M      N  ++  +I+G+    ++ E   
Sbjct: 169 QTRDETSWNAVILAHSQSGDWSGALRIFKEMKCDMKPNSTTYINVISGFSTPEVLPEGRK 228

Query: 157 LFEEME----ERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGF 212
           +  E+     + ++V  T++I+ Y + G   E   +F +M ++++VSW  MIG +  NG 
Sbjct: 229 IHAEIVANGFDSDLVVATALINMYGKCGSSHEAREVFDKMKKRDMVSWNVMIGCYVQNGD 288

Query: 213 HKESLLLF--IEMKG------------------------------ICDNGNNCNVQSCNS 240
             E+L L+  ++M+G                              I + G +  V    +
Sbjct: 289 FHEALELYQKLDMEGFKRTKATFVSILGACSSVKALAQGRLVHSHILERGLDSEVAVATA 348

Query: 241 MINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVG---QVSNAYYLFHNMPDRDA 297
           ++N Y + G LEEA+ +F+ +  RD ++W+++I  Y S G       A  +F  +  RD 
Sbjct: 349 LVNMYAKCGSLEEARKVFNAMKNRDAVAWSTLIGAYASNGYGKDARKARKVFDRLGSRDT 408

Query: 298 VAWTAMISGLVQNELFVEATYLFMEMR-AHGVPPLNATFSVLFGAAGATANIDLGRQIHC 356
           + W AMI+  VQN   V A  +F EM  A G+ P   TF  +  A  +   +   + +H 
Sbjct: 409 ICWNAMITTYVQNGCAVAAMKIFREMTGAAGLKPDAVTFIAVLEACASLGRLSEVKALHA 468

Query: 357 VLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANE 416
            + ++E ES++++ N LI+MYA+CG ++ A  +F+    + +VSW +MV  FS +G   E
Sbjct: 469 QISESELESNVVVTNTLINMYARCGSLEEAERLFAAAKEKTVVSWTAMVAAFSQYGRYAE 528

Query: 417 TLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMI 476
            L +F+ M   G  P+ VT+  IL  C+H G + +GW  F  M +++ + P  +H+ +M+
Sbjct: 529 ALDLFQEMDLEGVKPDDVTYTSILFVCTHGGSLEQGWRYFTDMAELHGLAPTADHFAAMV 588

Query: 477 NLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNA 536
           +LLGR+G++ +A+E +  +PFEPD   W   L AC    G  E+ E AA+R+ ELDP + 
Sbjct: 589 DLLGRSGRLFDAKELLESMPFEPDPVAWMTFLTACRI-HGKLELGEAAAERVYELDPSST 647

Query: 537 PAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVA 596
             ++ + NIYAA G   +   +R  M  +G++K+PG S++  +G +  F SG K   +  
Sbjct: 648 APYIAMSNIYAAHGMWEKVASVRKKMEERGLKKLPGLSFIEVDGKLHEFSSGGKYHPRTD 707

Query: 597 EI 598
           EI
Sbjct: 708 EI 709



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 111/451 (24%), Positives = 201/451 (44%), Gaps = 64/451 (14%)

Query: 133 KNVISWNAMIAGYVECCMMGEAIVLFEEME--ERNVVTWTSMISGYCRAGEVEEGYCLFR 190
           ++ +  NA+I+ Y +C  + +A  +FE M+  +RNVV+W +MI+ Y + G   E   L+ 
Sbjct: 40  RDTMVGNALISMYGKCDSLVDARSVFESMDWRQRNVVSWNAMIAAYAQNGHSTEALVLYW 99

Query: 191 RMPRKNV----VSWTAMIGGFAWNGFHKESLLLFIEMKG-ICDNGNNCNVQSCNSMINGY 245
           RM  + +    V++ +++G  +       SL    E+   +  +G +      N+++  Y
Sbjct: 100 RMNLQGLGTDHVTFVSVLGACS-------SLAQGREIHNRVFYSGLDSFQSLANALVTMY 152

Query: 246 IRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMP---DRDAVAWTA 302
            RFG + +A+ +F ++  RDE SW ++I  +   G  S A  +F  M      ++  +  
Sbjct: 153 ARFGSVGDAKRMFQSLQTRDETSWNAVILAHSQSGDWSGALRIFKEMKCDMKPNSTTYIN 212

Query: 303 MISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTE 362
           +ISG    E+  E                                   GR+IH  ++   
Sbjct: 213 VISGFSTPEVLPE-----------------------------------GRKIHAEIVANG 237

Query: 363 SESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFE 422
            +SDL++   LI+MY KCG    A  +F  M  RD+VSWN M+  +  +G  +E L++++
Sbjct: 238 FDSDLVVATALINMYGKCGSSHEAREVFDKMKKRDMVSWNVMIGCYVQNGDFHEALELYQ 297

Query: 423 SMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYV----SMINL 478
            +   G      TF+ IL ACS    +++G      +   + ++ G +  V    +++N+
Sbjct: 298 KLDMEGFKRTKATFVSILGACSSVKALAQG-----RLVHSHILERGLDSEVAVATALVNM 352

Query: 479 LGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPA 538
             + G ++EA + V       D   W  L+GA     G  + A  A K    L   +   
Sbjct: 353 YAKCGSLEEARK-VFNAMKNRDAVAWSTLIGAYA-SNGYGKDARKARKVFDRLGSRDTIC 410

Query: 539 HVVLCNIYAASGRHVEEHKLRMDM-GLKGVR 568
              +   Y  +G  V   K+  +M G  G++
Sbjct: 411 WNAMITTYVQNGCAVAAMKIFREMTGAAGLK 441



 Score =  101 bits (252), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 75/297 (25%), Positives = 145/297 (48%), Gaps = 24/297 (8%)

Query: 9   SLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNG---RLSEARRLF 65
           S V   T+ +  Y+K G ++EA+ +F  M  R+ V+++ ++  +  NG      +AR++F
Sbjct: 341 SEVAVATALVNMYAKCGSLEEARKVFNAMKNRDAVAWSTLIGAYASNGYGKDARKARKVF 400

Query: 66  EEMPERNVVSWTAMICGLADAGRVCEARKLFEEMP-----ERNVVSWNSMVVGLIRNGEL 120
           + +  R+ + W AMI      G    A K+F EM      + + V++ +++      G L
Sbjct: 401 DRLGSRDTICWNAMITTYVQNGCAVAAMKIFREMTGAAGLKPDAVTFIAVLEACASLGRL 460

Query: 121 NEAR----KVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGY 176
           +E +    ++  S    NV+  N +I  Y  C  + EA  LF   +E+ VV+WT+M++ +
Sbjct: 461 SEVKALHAQISESELESNVVVTNTLINMYARCGSLEEAERLFAAAKEKTVVSWTAMVAAF 520

Query: 177 CRAGEVEEGYCLFRRMPRKNV----VSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNN 232
            + G   E   LF+ M  + V    V++T+++      G  ++    F +M  +  +G  
Sbjct: 521 SQYGRYAEALDLFQEMDLEGVKPDDVTYTSILFVCTHGGSLEQGWRYFTDMAEL--HGLA 578

Query: 233 CNVQSCNSMINGYIRFGRLEEAQNLFDTVPVR-DEISWTSM-----IDGYLSVGQVS 283
                  +M++   R GRL +A+ L +++P   D ++W +      I G L +G+ +
Sbjct: 579 PTADHFAAMVDLLGRSGRLFDAKELLESMPFEPDPVAWMTFLTACRIHGKLELGEAA 635



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 53/185 (28%), Positives = 94/185 (50%), Gaps = 15/185 (8%)

Query: 330 PLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNI 389
           P N TF  +  +  +  ++  GR +H  +  +  E D ++ N LISMY KC  + +A ++
Sbjct: 5   PDNVTFLTVLCSCSSCGDVAEGRALHERIRCSRFERDTMVGNALISMYGKCDSLVDARSV 64

Query: 390 FSNM--VSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAG 447
           F +M    R++VSWN+M+  ++ +G + E L ++  M   G   + VTF+ +L ACS   
Sbjct: 65  FESMDWRQRNVVSWNAMIAAYAQNGHSTEALVLYWRMNLQGLGTDHVTFVSVLGACSS-- 122

Query: 448 LVSRGWELFNAMFDVYKIQPGPEHYVSMINLL----GRAGKIKEAEEFVLRLPFEPDHRI 503
            +++G E+ N +F       G + + S+ N L     R G + +A+     L    D   
Sbjct: 123 -LAQGREIHNRVF-----YSGLDSFQSLANALVTMYARFGSVGDAKRMFQSLQTR-DETS 175

Query: 504 WGALL 508
           W A++
Sbjct: 176 WNAVI 180



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 48/167 (28%), Positives = 89/167 (53%), Gaps = 14/167 (8%)

Query: 8   KSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEE 67
           +S VV   + I  Y++ G ++EA+ LF    ++ VVS+ AM++ F Q GR +EA  LF+E
Sbjct: 476 ESNVVVTNTLINMYARCGSLEEAERLFAAAKEKTVVSWTAMVAAFSQYGRYAEALDLFQE 535

Query: 68  MPERNV----VSWTAMICGLADAGRVCEARKLFEEMPERNVVS-----WNSMVVGLIRNG 118
           M    V    V++T+++      G + +  + F +M E + ++     + +MV  L R+G
Sbjct: 536 MDLEGVKPDDVTYTSILFVCTHGGSLEQGWRYFTDMAELHGLAPTADHFAAMVDLLGRSG 595

Query: 119 ELNEARKVFNSMPIK-NVISWNAMIAGYVECCMMGEAIVLFEEMEER 164
            L +A+++  SMP + + ++W      ++  C +   + L E   ER
Sbjct: 596 RLFDAKELLESMPFEPDPVAWMT----FLTACRIHGKLELGEAAAER 638


>gi|62733531|gb|AAX95648.1| Tetratricopeptide repeat, putative [Oryza sativa Japonica Group]
          Length = 888

 Score =  314 bits (804), Expect = 9e-83,   Method: Compositional matrix adjust.
 Identities = 188/618 (30%), Positives = 322/618 (52%), Gaps = 64/618 (10%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWT 77
           + ++ K G I  A+ LF  MP+R+VVSY  M+   ++ G + +A  L+ + P  +V  +T
Sbjct: 155 VREHVKAGDIVSARRLFDGMPERSVVSYTTMVDALMKRGSVRDAVELYRQCPLCSVPFFT 214

Query: 78  AMICGLADAGRVCEARKLFEEM------P------------------------------- 100
           AMI G        +A  +F EM      P                               
Sbjct: 215 AMIAGFVLNELPKDALGVFHEMLSCGVSPNEITLVSVIKACIGAGEFDLAMSIVGLAMKS 274

Query: 101 ---ERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVL 157
              ++N+   NS++   +R G+ + AR++F+ M +++V+SW A++  Y E   +  A  +
Sbjct: 275 NLLDKNLGVRNSLITLYLRKGDADAARRMFDEMEVRDVVSWTALLDVYAELGDLEGARRV 334

Query: 158 FEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRM----PRKNVVSWTAMIGGFA----- 208
            +EM ERN V+W ++++ + + G  +E   L+ +M     R N+  +++++G  A     
Sbjct: 335 LDEMPERNEVSWGTLVARHEQKGNAKEAVSLYSQMLADGCRPNISCFSSVLGACASLQDL 394

Query: 209 --WNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDE 266
                 H ++L      K  C N    NV   +++I+ Y +  +L +AQ +F ++P ++ 
Sbjct: 395 RSGRKIHNQTL------KMACSN----NVFVSSALIDMYCKCKQLPDAQMIFYSLPQKNI 444

Query: 267 ISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAH 326
           + W S+I GY +  ++  A  LF  MP R+  +W ++ISG  QN  F++A   F  M A 
Sbjct: 445 VCWNSLISGYSNNSKMVEAEELFKKMPARNVASWNSIISGYAQNRQFIDALKSFHAMLAS 504

Query: 327 GVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNA 386
           G  P   TFS +  A  +  ++++G+ +H  ++K   +  + +   L  MYAK G +D++
Sbjct: 505 GQSPGEITFSSVLLACASLCSLEMGKMVHAKIIKLGIKESIFVGTALSDMYAKSGDLDSS 564

Query: 387 YNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHA 446
             +F  M  R+ V+W +M+ G + +G A E++ +FE M+ +G  PN  TFL IL ACSH+
Sbjct: 565 KRVFYEMPKRNDVAWTAMIQGLAENGFAEESILLFEDMISAGITPNEQTFLAILFACSHS 624

Query: 447 GLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGA 506
           GLV      F  M     I P  +HY  M+++L RAG + EAE+ +L++  + +   W A
Sbjct: 625 GLVEHAMHYFE-MMQACGISPKAKHYTCMVDVLARAGHLAEAEDLLLKIESKSEANSWAA 683

Query: 507 LLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKG 566
           LL AC     N E+ E AAKRL ELD  N   +V+L N+YA+ G+  +  ++R+ M    
Sbjct: 684 LLSACNIYR-NKEMGERAAKRLQELDKDNTAGYVLLSNMYASCGKWKDAAEMRILMKGIN 742

Query: 567 VRKVPGCSWL-MRNGGIQ 583
           ++K  GCSW+ +R+  +Q
Sbjct: 743 LKKDGGCSWVQIRDEQLQ 760



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 79/303 (26%), Positives = 133/303 (43%), Gaps = 38/303 (12%)

Query: 241 MINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAW 300
           M+  +++ G +  A+ LFD +P R  +S+T+M+D  +  G V +A  L+   P      +
Sbjct: 154 MVREHVKAGDIVSARRLFDGMPERSVVSYTTMVDALMKRGSVRDAVELYRQCPLCSVPFF 213

Query: 301 TAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMK 360
           TAMI+G V NEL  +A  +F EM + GV P   T   +  A       DL   I  + MK
Sbjct: 214 TAMIAGFVLNELPKDALGVFHEMLSCGVSPNEITLVSVIKACIGAGEFDLAMSIVGLAMK 273

Query: 361 TE-SESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWN----------------- 402
           +   + +L + N LI++Y + G  D A  +F  M  RD+VSW                  
Sbjct: 274 SNLLDKNLGVRNSLITLYLRKGDADAARRMFDEMEVRDVVSWTALLDVYAELGDLEGARR 333

Query: 403 --------------SMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGL 448
                         ++V      G A E + ++  ML  G  PN   F  +L AC+    
Sbjct: 334 VLDEMPERNEVSWGTLVARHEQKGNAKEAVSLYSQMLADGCRPNISCFSSVLGACASLQD 393

Query: 449 VSRGWELFNAMFDVYKIQPGPEHYVS--MINLLGRAGKIKEAEEFVLRLPFEPDHRIWGA 506
           +  G ++ N      K+      +VS  +I++  +  ++ +A+     LP + +   W +
Sbjct: 394 LRSGRKIHN---QTLKMACSNNVFVSSALIDMYCKCKQLPDAQMIFYSLP-QKNIVCWNS 449

Query: 507 LLG 509
           L+ 
Sbjct: 450 LIS 452


>gi|357453021|ref|XP_003596787.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355485835|gb|AES67038.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 867

 Score =  314 bits (804), Expect = 9e-83,   Method: Compositional matrix adjust.
 Identities = 195/624 (31%), Positives = 322/624 (51%), Gaps = 53/624 (8%)

Query: 15  TSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEM------ 68
           TS +  Y K   +++ + +F  M +RNVVS+ ++L+G+  NG       LF +M      
Sbjct: 132 TSLVDMYMKTENVNDGRRVFDEMGERNVVSWTSLLAGYSWNGLYGYVWELFCQMQYEGVL 191

Query: 69  PERNVVS---------------------------------WTAMICGLADAGRVCEARKL 95
           P R  VS                                 + ++I   +  G + +AR +
Sbjct: 192 PNRYTVSTVIAALVNEGVVGIGLQVHAMVVKHGFEEAIPVFNSLISLYSRLGMLRDARDV 251

Query: 96  FEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAI 155
           F++M  R+ V+WNSM+ G +RNG+  E  ++FN M +  V   +   A  ++ C     +
Sbjct: 252 FDKMEIRDWVTWNSMIAGYVRNGQDLEVFEIFNKMQLAGVKPTHMTFASVIKSCASLREL 311

Query: 156 VLFEEME--------ERNVVTWTSMISGYCRAGEVEEGYCLFRRMPR-KNVVSWTAMIGG 206
            L + M+          + +  T+++    +  E+++   LF  M   KNVVSWTAMI G
Sbjct: 312 ALVKLMQCKALKSGFTTDQIVITALMVALSKCKEMDDALSLFSLMEEGKNVVSWTAMISG 371

Query: 207 FAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDE 266
              NG + +++ LF +M+     G   N  + ++++  +      E    +  T   R  
Sbjct: 372 CLQNGGNDQAVNLFSQMR---REGVKPNHFTYSAILTVHYPVFVSEMHAEVIKTNYERSS 428

Query: 267 ISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAH 326
              T+++D Y+ +G   +A  +F  +  +D +AW+AM++G  Q     EA  LF ++   
Sbjct: 429 SVGTALLDAYVKLGNTIDAVKVFEIIEAKDLMAWSAMLAGYAQTGETEEAAKLFHQLIKE 488

Query: 327 GVPPLNATFSVLFGA-AGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDN 385
           G+ P   TFS +  A A  TA  + G+Q H   +K    + L + + L++MYAK G ID+
Sbjct: 489 GIKPNEFTFSSVINACASPTAAAEQGKQFHAYAIKMRLNNALCVSSALVTMYAKRGNIDS 548

Query: 386 AYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSH 445
           A+ +F     RDLVSWNSM+ G+S HG A + L+VF+ M +     ++VTF+G+++AC+H
Sbjct: 549 AHEVFKRQKERDLVSWNSMISGYSQHGQAKKALEVFDEMQKRNMDVDAVTFIGVITACTH 608

Query: 446 AGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWG 505
           AGLV +G + FN+M + + I P  +HY  MI+L  RAG +++A   +  +PF P   +W 
Sbjct: 609 AGLVEKGQKYFNSMINDHHINPTMKHYSCMIDLYSRAGMLEKAMGIINEMPFPPGATVWR 668

Query: 506 ALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLK 565
            LLGA      N E+ E AA++L+ L P ++ A+V+L N+YAA+G   E   +R  M  +
Sbjct: 669 TLLGAAR-VHRNVELGELAAEKLISLQPEDSAAYVLLSNMYAAAGNWQERTNVRKLMDKR 727

Query: 566 GVRKVPGCSWLMRNGGIQMFLSGD 589
            V+K PG SW+        FL+GD
Sbjct: 728 KVKKEPGYSWIEVKNKTYSFLAGD 751



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 101/433 (23%), Positives = 186/433 (42%), Gaps = 99/433 (22%)

Query: 92  ARKLFEEMPER--NVVSWNSMVVGLIRNGELNEARKVFNSM------PIKNVIS------ 137
           A  LF+++P R   +   N ++    R+ +  EA  +F S+      P ++ +S      
Sbjct: 44  AHNLFDKIPHRPTTLKEHNQLLFSYSRDKQTKEALNLFVSLLHSSLQPDESTLSCVFNIC 103

Query: 138 ---WNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPR 194
               +  +   V C  +   +V        +V   TS++  Y +   V +G  +F  M  
Sbjct: 104 AGSLDGKLGRQVHCQCVKFGLV-------DHVSVGTSLVDMYMKTENVNDGRRVFDEMGE 156

Query: 195 KNVVSWTAMIGGFAWNGFHKESLLLFIEMK--GICDN----------------------- 229
           +NVVSWT+++ G++WNG +     LF +M+  G+  N                       
Sbjct: 157 RNVVSWTSLLAGYSWNGLYGYVWELFCQMQYEGVLPNRYTVSTVIAALVNEGVVGIGLQV 216

Query: 230 -------GNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQV 282
                  G    +   NS+I+ Y R G L +A+++FD + +RD ++W SMI GY+  GQ 
Sbjct: 217 HAMVVKHGFEEAIPVFNSLISLYSRLGMLRDARDVFDKMEIRDWVTWNSMIAGYVRNGQD 276

Query: 283 SNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAA 342
                                          +E   +F +M+  GV P + TF+ +  + 
Sbjct: 277 -------------------------------LEVFEIFNKMQLAGVKPTHMTFASVIKSC 305

Query: 343 GATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVS-RDLVSW 401
            +   + L + + C  +K+   +D I+   L+   +KC  +D+A ++FS M   +++VSW
Sbjct: 306 ASLRELALVKLMQCKALKSGFTTDQIVITALMVALSKCKEMDDALSLFSLMEEGKNVVSW 365

Query: 402 NSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILS-------ACSHAGLVSRGWE 454
            +M+ G   +G  ++ + +F  M   G  PN  T+  IL+       +  HA ++   +E
Sbjct: 366 TAMISGCLQNGGNDQAVNLFSQMRREGVKPNHFTYSAILTVHYPVFVSEMHAEVIKTNYE 425

Query: 455 ----LFNAMFDVY 463
               +  A+ D Y
Sbjct: 426 RSSSVGTALLDAY 438



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 55/227 (24%), Positives = 108/227 (47%), Gaps = 4/227 (1%)

Query: 285 AYYLFHNMPDRDAV--AWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAA 342
           A+ LF  +P R         ++    +++   EA  LF+ +    + P  +T S +F   
Sbjct: 44  AHNLFDKIPHRPTTLKEHNQLLFSYSRDKQTKEALNLFVSLLHSSLQPDESTLSCVFNIC 103

Query: 343 GATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWN 402
             + +  LGRQ+HC  +K      + +   L+ MY K   +++   +F  M  R++VSW 
Sbjct: 104 AGSLDGKLGRQVHCQCVKFGLVDHVSVGTSLVDMYMKTENVNDGRRVFDEMGERNVVSWT 163

Query: 403 SMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDV 462
           S++ G+S +GL     ++F  M   G  PN  T   +++A  + G+V  G ++ +AM   
Sbjct: 164 SLLAGYSWNGLYGYVWELFCQMQYEGVLPNRYTVSTVIAALVNEGVVGIGLQV-HAMVVK 222

Query: 463 YKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLG 509
           +  +     + S+I+L  R G +++A +   ++    D   W +++ 
Sbjct: 223 HGFEEAIPVFNSLISLYSRLGMLRDARDVFDKMEIR-DWVTWNSMIA 268


>gi|328774749|gb|AEB39774.1| pentatricopeptide repeat protein 65 [Funaria hygrometrica]
          Length = 771

 Score =  314 bits (804), Expect = 9e-83,   Method: Compositional matrix adjust.
 Identities = 188/599 (31%), Positives = 311/599 (51%), Gaps = 30/599 (5%)

Query: 23  KRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQN----GRLSEARR----LFEEMPERNVV 74
           K+G + EA  +   M  +    Y+ +  G LQ       L + R     + +   + N  
Sbjct: 73  KQGRLKEALGILNTMILQGTRVYSDVFRGLLQECARLRSLEQGREVHAAILKSGIQPNRY 132

Query: 75  SWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPI-- 132
               ++   A  G + +AR++F+ + +RN+VSW +M+   +   +  EA K + +M +  
Sbjct: 133 LENTLLSMYAKCGSLTDARRVFDGIRDRNIVSWTAMIEAFVAGNQNLEAYKCYETMKLAG 192

Query: 133 --KNVISWNAMIAGYV--ECCMMGEAIVL-----FEEMEERNVVTWTSMISGYCRAGEVE 183
              + +++ +++  +   E   +G+ + +       E+E R     TS++  Y + G++ 
Sbjct: 193 CKPDKVTFVSLLNAFTNPELLQVGQKVHMEIAKAGLELEPR---VGTSLVGMYAKCGDIS 249

Query: 184 EGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMIN 243
           +   +F ++P KNVV+WT +I G+A  G    +L L  +M+      N        S++ 
Sbjct: 250 KAQVIFDKLPEKNVVTWTLLIAGYAQQGQVDVALELLEKMQQAEVAPNKITY---TSILQ 306

Query: 244 GYIRFGRLEEAQNLFDTVPV----RDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVA 299
           G      LE  + +   +      R+     ++I  Y   G +  A  LF ++P RD V 
Sbjct: 307 GCTTPLALEHGKKVHRYIIQSGYGREIWVVNALITMYCKCGGLKEARKLFGDLPHRDVVT 366

Query: 300 WTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLM 359
           WTAM++G  Q     EA  LF  M+  G+ P   TF+    +  + A +  G+ IH  L+
Sbjct: 367 WTAMVTGYAQLGFHDEAIDLFRRMQQQGIKPDKMTFTSALTSCSSPAFLQEGKSIHQQLV 426

Query: 360 KTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLK 419
                 D+ L++ L+SMYAKCG +D+A  +F+ M  R++V+W +M+ G + HG   E L+
Sbjct: 427 HAGYSLDVYLQSALVSMYAKCGSMDDARLVFNQMSERNVVAWTAMITGCAQHGRCREALE 486

Query: 420 VFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLL 479
            FE M + G  P+ VTF  +LSAC+H GLV  G + F +M+  Y I+P  EHY   ++LL
Sbjct: 487 YFEQMKKQGIKPDKVTFTSVLSACTHVGLVEEGRKHFRSMYLDYGIKPMVEHYSCFVDLL 546

Query: 480 GRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAH 539
           GRAG ++EAE  +L +PF+P   +WGALL AC     + E  E AA+ +L+LDP +  A+
Sbjct: 547 GRAGHLEEAENVILTMPFQPGPSVWGALLSACRI-HSDVERGERAAENVLKLDPDDDGAY 605

Query: 540 VVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
           V L NIYAA+GR+ +  K+R  M  + V K PG SW+  +G + +F   DK   +  EI
Sbjct: 606 VALSNIYAAAGRYEDAEKVRQVMEKRDVVKEPGQSWIEVDGKVHVFHVEDKSHPEAKEI 664



 Score =  152 bits (384), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 127/527 (24%), Positives = 241/527 (45%), Gaps = 95/527 (18%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMP----ERNV 73
           ++ Y+K G + +A+ +F  +  RN+VS+ AM+  F+   +  EA + +E M     + + 
Sbjct: 138 LSMYAKCGSLTDARRVFDGIRDRNIVSWTAMIEAFVAGNQNLEAYKCYETMKLAGCKPDK 197

Query: 74  VSWTAMICGLADAGRVCEARKLFEEMP----ERNVVSWNSMVVGLIRNGELNEARKVFNS 129
           V++ +++    +   +   +K+  E+     E       S+V    + G++++A+ +F+ 
Sbjct: 198 VTFVSLLNAFTNPELLQVGQKVHMEIAKAGLELEPRVGTSLVGMYAKCGDISKAQVIFDK 257

Query: 130 MPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNV----VTWTSMISG---------- 175
           +P KNV++W  +IAGY +   +  A+ L E+M++  V    +T+TS++ G          
Sbjct: 258 LPEKNVVTWTLLIAGYAQQGQVDVALELLEKMQQAEVAPNKITYTSILQGCTTPLALEHG 317

Query: 176 -------------------------YCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWN 210
                                    YC+ G ++E   LF  +P ++VV+WTAM+ G+A  
Sbjct: 318 KKVHRYIIQSGYGREIWVVNALITMYCKCGGLKEARKLFGDLPHRDVVTWTAMVTGYAQL 377

Query: 211 GFHKESLLLF--IEMKGICDNGNNCN--VQSCNSMINGYIRFGRLEEAQNLFDTVPVRDE 266
           GFH E++ LF  ++ +GI  +       + SC+S    +++ G+    Q L       D 
Sbjct: 378 GFHDEAIDLFRRMQQQGIKPDKMTFTSALTSCSS--PAFLQEGK-SIHQQLVHAGYSLDV 434

Query: 267 ISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAH 326
              ++++  Y   G + +A  +F+ M +R+ VAWTAMI+G  Q+    EA   F +M+  
Sbjct: 435 YLQSALVSMYAKCGSMDDARLVFNQMSERNVVAWTAMITGCAQHGRCREALEYFEQMKKQ 494

Query: 327 GVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILEN--CLISMYAKCGVID 384
           G+ P   TF+ +  A      ++ GR+ H   M  +     ++E+  C + +  + G ++
Sbjct: 495 GIKPDKVTFTSVLSACTHVGLVEEGRK-HFRSMYLDYGIKPMVEHYSCFVDLLGRAGHLE 553

Query: 385 NAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACS 444
            A N+              + M F                      P    +  +LSAC 
Sbjct: 554 EAENVI-------------LTMPF---------------------QPGPSVWGALLSACR 579

Query: 445 HAGLVSRGWELFNAMFDVYKIQPGPE-HYVSMINLLGRAGKIKEAEE 490
               V RG     A  +V K+ P  +  YV++ N+   AG+ ++AE+
Sbjct: 580 IHSDVERGE---RAAENVLKLDPDDDGAYVALSNIYAAAGRYEDAEK 623



 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 104/453 (22%), Positives = 204/453 (45%), Gaps = 34/453 (7%)

Query: 114 LIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEME--------ERN 165
           L + G L EA  + N+M ++    ++ +  G ++ C    ++    E+         + N
Sbjct: 71  LCKQGRLKEALGILNTMILQGTRVYSDVFRGLLQECARLRSLEQGREVHAAILKSGIQPN 130

Query: 166 VVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMK- 224
                +++S Y + G + +   +F  +  +N+VSWTAMI  F     + E+   +  MK 
Sbjct: 131 RYLENTLLSMYAKCGSLTDARRVFDGIRDRNIVSWTAMIEAFVAGNQNLEAYKCYETMKL 190

Query: 225 GICDNGNNCNVQSCNSMING-YIRFGR---LEEAQNLFDTVPVRDEISWTSMIDGYLSVG 280
             C       V   N+  N   ++ G+   +E A+   +  P       TS++  Y   G
Sbjct: 191 AGCKPDKVTFVSLLNAFTNPELLQVGQKVHMEIAKAGLELEPR----VGTSLVGMYAKCG 246

Query: 281 QVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFG 340
            +S A  +F  +P+++ V WT +I+G  Q      A  L  +M+   V P   T++ +  
Sbjct: 247 DISKAQVIFDKLPEKNVVTWTLLIAGYAQQGQVDVALELLEKMQQAEVAPNKITYTSILQ 306

Query: 341 AAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVS 400
                  ++ G+++H  ++++    ++ + N LI+MY KCG +  A  +F ++  RD+V+
Sbjct: 307 GCTTPLALEHGKKVHRYIIQSGYGREIWVVNALITMYCKCGGLKEARKLFGDLPHRDVVT 366

Query: 401 WNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAM- 459
           W +MV G++  G  +E + +F  M + G  P+ +TF   L++CS    +  G  +   + 
Sbjct: 367 WTAMVTGYAQLGFHDEAIDLFRRMQQQGIKPDKMTFTSALTSCSSPAFLQEGKSIHQQLV 426

Query: 460 -----FDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGAC--- 511
                 DVY +Q       +++++  + G + +A   V     E +   W A++  C   
Sbjct: 427 HAGYSLDVY-LQS------ALVSMYAKCGSMDDA-RLVFNQMSERNVVAWTAMITGCAQH 478

Query: 512 GFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCN 544
           G C    E  E   K+ ++ D +   + +  C 
Sbjct: 479 GRCREALEYFEQMKKQGIKPDKVTFTSVLSACT 511



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 84/345 (24%), Positives = 165/345 (47%), Gaps = 56/345 (16%)

Query: 15  TSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNV- 73
           TS +  Y+K G I +A+ +F  +P++NVV++  +++G+ Q G++  A  L E+M +  V 
Sbjct: 236 TSLVGMYAKCGDISKAQVIFDKLPEKNVVTWTLLIAGYAQQGQVDVALELLEKMQQAEVA 295

Query: 74  ---VSWTAMICGLADAGRVCEARKLFEEMPE----RNVVSWNSMVVGLIRNGELNEARKV 126
              +++T+++ G      +   +K+   + +    R +   N+++    + G L EARK+
Sbjct: 296 PNKITYTSILQGCTTPLALEHGKKVHRYIIQSGYGREIWVVNALITMYCKCGGLKEARKL 355

Query: 127 FNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNV----VTWTS----------- 171
           F  +P ++V++W AM+ GY +     EAI LF  M+++ +    +T+TS           
Sbjct: 356 FGDLPHRDVVTWTAMVTGYAQLGFHDEAIDLFRRMQQQGIKPDKMTFTSALTSCSSPAFL 415

Query: 172 ------------------------MISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGF 207
                                   ++S Y + G +++   +F +M  +NVV+WTAMI G 
Sbjct: 416 QEGKSIHQQLVHAGYSLDVYLQSALVSMYAKCGSMDDARLVFNQMSERNVVAWTAMITGC 475

Query: 208 AWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEI 267
           A +G  +E+L  F +MK     G   +  +  S+++     G +EE +  F ++ +   I
Sbjct: 476 AQHGRCREALEYFEQMK---KQGIKPDKVTFTSVLSACTHVGLVEEGRKHFRSMYLDYGI 532

Query: 268 S-----WTSMIDGYLSVGQVSNAYYLFHNMPDRDAVA-WTAMISG 306
                 ++  +D     G +  A  +   MP +   + W A++S 
Sbjct: 533 KPMVEHYSCFVDLLGRAGHLEEAENVILTMPFQPGPSVWGALLSA 577



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 59/227 (25%), Positives = 112/227 (49%), Gaps = 5/227 (2%)

Query: 296 DAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIH 355
           D +A +  +S L +     EA  +   M   G    +  F  L        +++ GR++H
Sbjct: 60  DTLANSGDVSILCKQGRLKEALGILNTMILQGTRVYSDVFRGLLQECARLRSLEQGREVH 119

Query: 356 CVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLAN 415
             ++K+  + +  LEN L+SMYAKCG + +A  +F  +  R++VSW +M+  F       
Sbjct: 120 AAILKSGIQPNRYLENTLLSMYAKCGSLTDARRVFDGIRDRNIVSWTAMIEAFVAGNQNL 179

Query: 416 ETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSM 475
           E  K +E+M  +G  P+ VTF+ +L+A ++  L+  G ++   +     ++  P    S+
Sbjct: 180 EAYKCYETMKLAGCKPDKVTFVSLLNAFTNPELLQVGQKVHMEIAKA-GLELEPRVGTSL 238

Query: 476 INLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFC-EGNAEIA 521
           + +  + G I +A+    +LP E +   W  L+   G+  +G  ++A
Sbjct: 239 VGMYAKCGDISKAQVIFDKLP-EKNVVTWTLLIA--GYAQQGQVDVA 282



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 56/195 (28%), Positives = 92/195 (47%), Gaps = 37/195 (18%)

Query: 7   PKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNV----VSYNAMLS-----GFLQNGR 57
           P   VV  T+ +T Y++ GF DEA  LF+ M Q+ +    +++ + L+      FLQ G+
Sbjct: 360 PHRDVVTWTAMVTGYAQLGFHDEAIDLFRRMQQQGIKPDKMTFTSALTSCSSPAFLQEGK 419

Query: 58  LSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRN 117
            S  ++L       +V   +A++   A  G + +AR +F +M ERNVV+W +M+ G  ++
Sbjct: 420 -SIHQQLVHAGYSLDVYLQSALVSMYAKCGSMDDARLVFNQMSERNVVAWTAMITGCAQH 478

Query: 118 GELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYC 177
           G   EA + F  M  + +                           + + VT+TS++S   
Sbjct: 479 GRCREALEYFEQMKKQGI---------------------------KPDKVTFTSVLSACT 511

Query: 178 RAGEVEEGYCLFRRM 192
             G VEEG   FR M
Sbjct: 512 HVGLVEEGRKHFRSM 526


>gi|359495457|ref|XP_003634994.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Vitis vinifera]
          Length = 993

 Score =  314 bits (804), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 198/643 (30%), Positives = 336/643 (52%), Gaps = 59/643 (9%)

Query: 9   SLVVHLTSSITKYSKRGFIDEAKALFQLMPQR-NVVSYNAMLSGFLQNGRLSEARRLFEE 67
           S+V    S +  Y+K   ++ A+ LF  MP++ +VVS+N+M+S +  NG+  EA RLF E
Sbjct: 249 SIVFVANSIVGMYTKCNDLNGARQLFDRMPEKEDVVSWNSMISAYSSNGQSIEALRLFGE 308

Query: 68  MPER----NVVSWTAMICGLADAGRVCEARKLFEEMPER----NVVSWNSMVVGLIRNGE 119
           M +     N  ++ A +    D+  + +   +   + +     NV   N+++    R G+
Sbjct: 309 MQKASLAPNTYTFVAALQACEDSSFIKQGMFIHATVLKSSYYINVFVANALIAMYARFGK 368

Query: 120 LNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEM----EERNVVTWTSMISG 175
           + EA  +F +M   + ISWN+M++G+V+  +  EA+  + EM    ++ ++V   S+I+ 
Sbjct: 369 MGEAANIFYNMDDWDTISWNSMLSGFVQNGLYHEALQFYHEMRDAGQKPDLVAVISIIAA 428

Query: 176 YCRAGEVEEGY-----------------------------------CLFRRMPRKNVVSW 200
             R+G    G                                    C+F +MP K+VVSW
Sbjct: 429 SARSGNTLNGMQIHAYAMKNGLDSDLQVGNSLVDMYAKFCSMKYMDCIFDKMPDKDVVSW 488

Query: 201 TAMIGGFAWNGFHKESLLLF--IEMKGICDNGNNCNVQSCNSMI---NGYIRFGRLEEAQ 255
           T +I G A NG H  +L LF  ++++GI     + +V   +S++   +G      ++E  
Sbjct: 489 TTIIAGHAQNGSHSRALELFREVQLEGI-----DLDVMMISSILLACSGLKLISSVKEIH 543

Query: 256 NLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVE 315
           +      + D +    ++D Y   G V  A  +F  +  +D V+WT+MIS  V N L  E
Sbjct: 544 SYIIRKGLSDLVLQNGIVDVYGECGNVDYAARMFELIEFKDVVSWTSMISCYVHNGLANE 603

Query: 316 ATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLIS 375
           A  LF  M+  GV P + +   +  AA + + +  G++IH  L++     +  L + L+ 
Sbjct: 604 ALELFHLMKETGVEPDSISLVSILSAAASLSALKKGKEIHGFLIRKGFVLEGSLASTLVD 663

Query: 376 MYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVT 435
           MYA+CG ++ + N+F+ + ++DLV W SM+  +  HG     + +F  M +    P+ + 
Sbjct: 664 MYARCGTLEKSRNVFNFIRNKDLVLWTSMINAYGMHGCGRAAIDLFRRMEDESIAPDHIA 723

Query: 436 FLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRL 495
           F+ +L ACSH+GL++ G     +M   Y+++P PEHYV +++LLGRA  ++EA +FV  +
Sbjct: 724 FVAVLYACSHSGLMNEGRRFLESMKYEYQLEPWPEHYVCLVDLLGRANHLEEAYQFVKGM 783

Query: 496 PFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEE 555
             EP   +W ALLGAC     N E+ E AA++LLE+DP N   +V++ N+YAA  R  + 
Sbjct: 784 EVEPTAEVWCALLGACQI-HSNKELGEIAAQKLLEMDPENPGNYVLVSNVYAAERRWKDV 842

Query: 556 HKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
            ++RM M   G++K PGCSW+     +  F++ DK   Q  EI
Sbjct: 843 EEVRMRMKASGLKKNPGCSWIEVGNKVHTFMARDKSHPQSYEI 885



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 137/554 (24%), Positives = 234/554 (42%), Gaps = 101/554 (18%)

Query: 15  TSSITKYSKRGFIDEA-KALFQLMPQRNVV------SYNAMLSGFLQNGRLSEARRLFEE 67
           T S+ +  KRG ++EA ++L  L   ++        +Y+++L        LSE +++   
Sbjct: 80  TPSLREICKRGSVNEAFQSLTDLFANQSPSQFSLDEAYSSVLELCGSKKALSEGQQVHAH 139

Query: 68  MPERN-----VVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNE 122
           M   N     V   T ++      G + +A KLF+ MP + + +WN+M+   + NGE   
Sbjct: 140 MITSNALFNSVFLSTRLVFMYGKCGCLVDAEKLFDGMPHKTIFTWNAMIGAYVTNGEPLG 199

Query: 123 ARKVFNSMPIKN---------------------------------------VISWNAMIA 143
           + +++  M +                                         V   N+++ 
Sbjct: 200 SLELYREMRVSGIPLDACTFPCILKACGLLKDRRCGAEVHGLAIKEGYVSIVFVANSIVG 259

Query: 144 GYVECCMMGEAIVLFEEMEER-NVVTWTSMISGYCRAGEVEEGYCLFRRMPRK----NVV 198
            Y +C  +  A  LF+ M E+ +VV+W SMIS Y   G+  E   LF  M +     N  
Sbjct: 260 MYTKCNDLNGARQLFDRMPEKEDVVSWNSMISAYSSNGQSIEALRLFGEMQKASLAPNTY 319

Query: 199 SWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLF 258
           ++ A +     + F K+ + +      +  +    NV   N++I  Y RFG++ EA N+F
Sbjct: 320 TFVAALQACEDSSFIKQGMFIH---ATVLKSSYYINVFVANALIAMYARFGKMGEAANIF 376

Query: 259 DTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATY 318
             +   D ISW SM+ G++                               QN L+ EA  
Sbjct: 377 YNMDDWDTISWNSMLSGFV-------------------------------QNGLYHEALQ 405

Query: 319 LFMEMRAHGVPP-LNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMY 377
            + EMR  G  P L A  S++  A+  + N   G QIH   MK   +SDL + N L+ MY
Sbjct: 406 FYHEMRDAGQKPDLVAVISII-AASARSGNTLNGMQIHAYAMKNGLDSDLQVGNSLVDMY 464

Query: 378 AKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFL 437
           AK   +     IF  M  +D+VSW +++ G + +G  +  L++F  +   G   + +   
Sbjct: 465 AKFCSMKYMDCIFDKMPDKDVVSWTTIIAGHAQNGSHSRALELFREVQLEGIDLDVMMIS 524

Query: 438 GILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYV---SMINLLGRAGKIKEAEEFVLR 494
            IL ACS   L+S   E+ +     Y I+ G    V    ++++ G  G +  A      
Sbjct: 525 SILLACSGLKLISSVKEIHS-----YIIRKGLSDLVLQNGIVDVYGECGNVDYAARMFEL 579

Query: 495 LPFEPDHRIWGALL 508
           + F+ D   W +++
Sbjct: 580 IEFK-DVVSWTSMI 592



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 81/290 (27%), Positives = 136/290 (46%), Gaps = 20/290 (6%)

Query: 270 TSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVP 329
           T ++  Y   G + +A  LF  MP +    W AMI   V N   + +  L+ EMR  G+P
Sbjct: 154 TRLVFMYGKCGCLVDAEKLFDGMPHKTIFTWNAMIGAYVTNGEPLGSLELYREMRVSGIP 213

Query: 330 PLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNI 389
               TF  +  A G   +   G ++H + +K    S + + N ++ MY KC  ++ A  +
Sbjct: 214 LDACTFPCILKACGLLKDRRCGAEVHGLAIKEGYVSIVFVANSIVGMYTKCNDLNGARQL 273

Query: 390 FSNMVSR-DLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGL 448
           F  M  + D+VSWNSM+  +S +G + E L++F  M ++   PN+ TF+  L AC  +  
Sbjct: 274 FDRMPEKEDVVSWNSMISAYSSNGQSIEALRLFGEMQKASLAPNTYTFVAALQACEDSSF 333

Query: 449 VSRGWELFNAMFDVYKIQPGPEHYV------SMINLLGRAGKIKEAEEFVLRLPFEPDHR 502
           + +G      MF ++       +Y+      ++I +  R GK+ EA      +  + D  
Sbjct: 334 IKQG------MF-IHATVLKSSYYINVFVANALIAMYARFGKMGEAANIFYNMD-DWDTI 385

Query: 503 IWGALLGACGFCEGNAEIAEHAAKRLLEL-DPLNAPAHVVLCNIYAASGR 551
            W ++L   GF +    +   A +   E+ D    P  V + +I AAS R
Sbjct: 386 SWNSMLS--GFVQNG--LYHEALQFYHEMRDAGQKPDLVAVISIIAASAR 431



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 48/206 (23%), Positives = 91/206 (44%), Gaps = 11/206 (5%)

Query: 310 NELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESE-SDLI 368
           NE F   T LF          L+  +S +    G+   +  G+Q+H  ++ + +  + + 
Sbjct: 93  NEAFQSLTDLFANQSPSQFS-LDEAYSSVLELCGSKKALSEGQQVHAHMITSNALFNSVF 151

Query: 369 LENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESG 428
           L   L+ MY KCG + +A  +F  M  + + +WN+M+  +  +G    +L+++  M  SG
Sbjct: 152 LSTRLVFMYGKCGCLVDAEKLFDGMPHKTIFTWNAMIGAYVTNGEPLGSLELYREMRVSG 211

Query: 429 THPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYV----SMINLLGRAGK 484
              ++ TF  IL AC        G E+         I+ G    V    S++ +  +   
Sbjct: 212 IPLDACTFPCILKACGLLKDRRCGAEVHG-----LAIKEGYVSIVFVANSIVGMYTKCND 266

Query: 485 IKEAEEFVLRLPFEPDHRIWGALLGA 510
           +  A +   R+P + D   W +++ A
Sbjct: 267 LNGARQLFDRMPEKEDVVSWNSMISA 292


>gi|413933352|gb|AFW67903.1| pentatricopeptide repeat protein PPR868-14 [Zea mays]
          Length = 788

 Score =  314 bits (804), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 199/652 (30%), Positives = 326/652 (50%), Gaps = 74/652 (11%)

Query: 8   KSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEE 67
           +S+  +L ++   +++ G  D+A          +  +Y+ M+S  ++ G ++ ARRLF  
Sbjct: 115 RSVASNLLTAYAAFARAGDRDQAFRDCVAADAASSFTYDFMVSEHVKAGDIASARRLFYG 174

Query: 68  MPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVF 127
           MPE++VVS+T M+  L   G V +A +L+E  P  +V  + +M+ G +RN    +A  VF
Sbjct: 175 MPEKSVVSYTTMVDALMKRGSVRDAVELYERCPLHSVAFFTAMISGFVRNELHKDAFTVF 234

Query: 128 NSMPI----KNVISWNAMI-----AGYVECCM---------------------------- 150
             M       NV++   +I     AG  +  M                            
Sbjct: 235 RKMLTCSVRPNVVTLICVIKACVGAGEFDLAMGVVGLAVKCNLFEKSIEVHNSLITLYLR 294

Query: 151 MGEAIV---LFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGF 207
           MG+A     +F++ME R+VV+WT+++  Y   G+++    +   MP +N VSW  +I   
Sbjct: 295 MGDAAAARRVFDDMEVRDVVSWTALLDVYADLGDLDGARRVLDAMPARNEVSWGTLIARH 354

Query: 208 AWNGFHKESLLLFIEM--KGICDN------------------------------GNNCNV 235
              G   E+L L+ +M   G   N                              G++ N+
Sbjct: 355 EQKGDTAEALKLYSQMLADGCRPNISCFSSVLSACATLQDLRGGTRIHANALKMGSSTNL 414

Query: 236 QSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDR 295
              +S+I+ Y +  +   AQ +F+++P ++ + W S+I GY   G++  A  LF+ MP R
Sbjct: 415 FVSSSLIDMYCKCKQCTYAQRVFNSLPEKNTVCWNSLISGYSWNGKMVEAEGLFNKMPAR 474

Query: 296 DAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIH 355
           ++V+W  MISG  +N  F +A   F  M A G  P   T S +  A     ++++GR +H
Sbjct: 475 NSVSWNTMISGYAENRRFGDALNYFYAMLASGHIPGEITLSSVLLACANLCSLEMGRMVH 534

Query: 356 CVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLAN 415
             ++K   E ++ +   L  MYAK G +D++  +F  M  ++ ++W +MV G + +G A 
Sbjct: 535 AEIVKLGIEDNIFMGTALCDMYAKSGDLDSSRRVFYQMPEKNNITWTAMVQGLAENGFAE 594

Query: 416 ETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSM 475
           E++ +FE M+E+G  PN  TFL IL ACSH GLV +    F  M   + I P  +HY  M
Sbjct: 595 ESISLFEDMIENGIAPNEHTFLAILFACSHCGLVEQAIHYFETM-QAHGIPPKSKHYTCM 653

Query: 476 INLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLN 535
           +++L RAG + EAEE ++++  E D   W +LL AC     N EI E AAK+L EL+  N
Sbjct: 654 VDVLARAGCLPEAEELLMKVSSELDTSSWSSLLSACSTYR-NKEIGERAAKKLHELEKDN 712

Query: 536 APAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLS 587
              +V+L N+YA+ G+  +  + R+ M    ++K  GCSWL   G    F S
Sbjct: 713 TAGYVLLSNMYASCGKWKDAAETRILMQGASLKKDAGCSWLQLRGQYHAFFS 764


>gi|144923518|gb|ABP02616.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 501

 Score =  313 bits (803), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 152/429 (35%), Positives = 256/429 (59%), Gaps = 7/429 (1%)

Query: 9   SLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEM 68
           + +V  T+SI+ + + G    A  +F  MP +N+ S+N ML+G+++N RL +AR LF+ M
Sbjct: 25  TYIVKCTNSISTHMRNGHCHLALRVFDSMPYKNLFSWNLMLTGYVKNRRLVDARNLFDLM 84

Query: 69  PERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFN 128
           P+++ VSW  M+ G   +G V EA+ +F+ MP ++ +SWN ++   ++NG L EAR++F 
Sbjct: 85  PQKDAVSWNVMLSGYVRSGCVDEAKLVFDNMPYKDSISWNGLLAVYVQNGRLEEARRLFE 144

Query: 129 SMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCL 188
           S     +ISWN ++ GYV+  M+G+A  LF+ M  RN ++W +MISGY R G++ +   L
Sbjct: 145 SKVDWELISWNCLMGGYVKRKMLGDARRLFDHMPVRNAISWNTMISGYARDGDLLQARRL 204

Query: 189 FRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRF 248
           F   P ++V +WTAM+  +  +G   E+  +F EM G  +        + N MI GY+++
Sbjct: 205 FEESPVRDVFTWTAMVFAYVQSGMLDEARRVFDEMPGKRE-------MAYNVMIAGYVQY 257

Query: 249 GRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLV 308
            +++ A+ LF+ +P R+  SW ++I GY   G ++ A  LF  M  RD V+W A+I+G  
Sbjct: 258 KKMDMARELFEAMPCRNVGSWNTIISGYGQNGDIAQARELFDMMTQRDCVSWAAIIAGYA 317

Query: 309 QNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLI 368
           Q   + +  ++ ++M+  G     +TF          A + LG+Q+H   +KT  ++  +
Sbjct: 318 QTGHYEKVMHMLVKMKRDGKSLNRSTFCCALSTCAGMAALVLGKQVHGQAVKTGYDNGCL 377

Query: 369 LENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESG 428
           + N L+ MY KCG I  AY++F  M  +D++SWN+M+ G++ HG   + L VF+SM  +G
Sbjct: 378 VGNALLEMYCKCGSIGEAYDVFERMQLKDIISWNTMLAGYARHGFGRQALLVFDSMKTAG 437

Query: 429 THPNSVTFL 437
             P+ +T L
Sbjct: 438 FKPDEITML 446



 Score =  202 bits (515), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 116/359 (32%), Positives = 189/359 (52%), Gaps = 38/359 (10%)

Query: 7   PKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFE 66
           P+   V     ++ Y + G +DEAK +F  MP ++ +S+N +L+ ++QNGRL EARRLFE
Sbjct: 85  PQKDAVSWNVMLSGYVRSGCVDEAKLVFDNMPYKDSISWNGLLAVYVQNGRLEEARRLFE 144

Query: 67  -------------------------------EMPERNVVSWTAMICGLADAGRVCEARKL 95
                                           MP RN +SW  MI G A  G + +AR+L
Sbjct: 145 SKVDWELISWNCLMGGYVKRKMLGDARRLFDHMPVRNAISWNTMISGYARDGDLLQARRL 204

Query: 96  FEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAI 155
           FEE P R+V +W +MV   +++G L+EAR+VF+ MP K  +++N MIAGYV+   M  A 
Sbjct: 205 FEESPVRDVFTWTAMVFAYVQSGMLDEARRVFDEMPGKREMAYNVMIAGYVQYKKMDMAR 264

Query: 156 VLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKE 215
            LFE M  RNV +W ++ISGY + G++ +   LF  M +++ VSW A+I G+A  G +++
Sbjct: 265 ELFEAMPCRNVGSWNTIISGYGQNGDIAQARELFDMMTQRDCVSWAAIIAGYAQTGHYEK 324

Query: 216 SLLLFIEMKGICDNGNN----CNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTS 271
            + + ++MK    + N     C + +C  M    +  G+    Q +  T      +   +
Sbjct: 325 VMHMLVKMKRDGKSLNRSTFCCALSTCAGM--AALVLGKQVHGQAV-KTGYDNGCLVGNA 381

Query: 272 MIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPP 330
           +++ Y   G +  AY +F  M  +D ++W  M++G  ++    +A  +F  M+  G  P
Sbjct: 382 LLEMYCKCGSIGEAYDVFERMQLKDIISWNTMLAGYARHGFGRQALLVFDSMKTAGFKP 440



 Score =  185 bits (469), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 108/330 (32%), Positives = 172/330 (52%), Gaps = 15/330 (4%)

Query: 115 IRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMIS 174
           +RNG  + A +VF+SMP KN+ SWN M+ GYV+   + +A  LF+ M +++ V+W  M+S
Sbjct: 38  MRNGHCHLALRVFDSMPYKNLFSWNLMLTGYVKNRRLVDARNLFDLMPQKDAVSWNVMLS 97

Query: 175 GYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCN 234
           GY R+G V+E   +F  MP K+ +SW  ++  +  NG  +E+  LF       ++  +  
Sbjct: 98  GYVRSGCVDEAKLVFDNMPYKDSISWNGLLAVYVQNGRLEEARRLF-------ESKVDWE 150

Query: 235 VQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPD 294
           + S N ++ GY++   L +A+ LFD +PVR+ ISW +MI GY   G +  A  LF   P 
Sbjct: 151 LISWNCLMGGYVKRKMLGDARRLFDHMPVRNAISWNTMISGYARDGDLLQARRLFEESPV 210

Query: 295 RDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQI 354
           RD   WTAM+   VQ+ +  EA  +F EM           ++V+         +D+ R+ 
Sbjct: 211 RDVFTWTAMVFAYVQSGMLDEARRVFDEMPG----KREMAYNVMIAGYVQYKKMDMARE- 265

Query: 355 HCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLA 414
              L +     ++   N +IS Y + G I  A  +F  M  RD VSW +++ G++  G  
Sbjct: 266 ---LFEAMPCRNVGSWNTIISGYGQNGDIAQARELFDMMTQRDCVSWAAIIAGYAQTGHY 322

Query: 415 NETLKVFESMLESGTHPNSVTFLGILSACS 444
            + + +   M   G   N  TF   LS C+
Sbjct: 323 EKVMHMLVKMKRDGKSLNRSTFCCALSTCA 352


>gi|357507475|ref|XP_003624026.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|124360495|gb|ABN08505.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355499041|gb|AES80244.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 646

 Score =  313 bits (803), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 176/506 (34%), Positives = 275/506 (54%), Gaps = 48/506 (9%)

Query: 116 RNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEE----RNVVTWTS 171
           + G +  ARK+F+ MP + V  WN MI+GY +C    EA  LF  M +    RNV+TWT+
Sbjct: 146 KYGPIEFARKLFDEMPDRTVADWNVMISGYWKCGNEEEASTLFHVMGDQEISRNVITWTT 205

Query: 172 MISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEM-------- 223
           MI+G+ + G ++     F +MP ++VVSW AM+ G+A  G  +E++ LF +M        
Sbjct: 206 MITGHAKKGNLKTARMYFDKMPERSVVSWNAMLSGYAQGGAPEETIRLFNDMLSPGNVQP 265

Query: 224 ---------KGICDNGNNCNVQSC-----------------NSMINGYIRFGRLEEAQNL 257
                          G+ C  +S                   ++++ + + G LE A  +
Sbjct: 266 DETTWVTVISSCSSLGDPCLSESIVRKLDDTVGFRPNYFVKTALLDMHAKCGNLEAAHKI 325

Query: 258 FDTVPV---RDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFV 314
           F+ + V   R  + W +MI  Y  VG + +A +LF  MP RD V+W +MI+G  QN   V
Sbjct: 326 FEQLGVYKYRSSVPWNAMISAYARVGDLPSARHLFDKMPQRDTVSWNSMIAGYTQNGESV 385

Query: 315 EATYLFMEM-RAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCL 373
           +A  LF EM  +    P   T   +F A G    + LG     +L +   +  + + N L
Sbjct: 386 KAIKLFEEMISSEDSKPDEVTMVSVFSACGHLGELGLGNWAVSILKENHIQISISVYNSL 445

Query: 374 ISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNS 433
           ISMY++CG + +A  IF  M +RDLVS+N+++ GF+ HG   E++++   M E G  P+ 
Sbjct: 446 ISMYSRCGSMQDAVLIFQEMATRDLVSYNTLISGFAEHGHGMESIELLLKMKEDGIEPDR 505

Query: 434 VTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVL 493
           +T++ IL+ACSHAGL+  G  LF ++       P  +HY  MI++LGRAG+++EA + + 
Sbjct: 506 ITYIAILTACSHAGLLGEGQRLFESI-----KFPDVDHYACMIDMLGRAGRLEEAMKLIQ 560

Query: 494 RLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHV 553
            +P EP   I+G+LL A        E+ E AA +L +++P N+  +V+L NIYA++GR  
Sbjct: 561 SMPMEPHAGIYGSLLNATSI-HKQVELGELAAAKLFKVEPHNSGNYVLLSNIYASAGRWK 619

Query: 554 EEHKLRMDMGLKGVRKVPGCSWLMRN 579
           +  K+R  M  +GV+K  G SWL  N
Sbjct: 620 DGDKVRDTMRKQGVKKTTGLSWLEHN 645



 Score =  169 bits (429), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 118/423 (27%), Positives = 197/423 (46%), Gaps = 54/423 (12%)

Query: 21  YSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPE----RNVVSW 76
           Y+K G I+ A+ LF  MP R V  +N M+SG+ + G   EA  LF  M +    RNV++W
Sbjct: 144 YAKYGPIEFARKLFDEMPDRTVADWNVMISGYWKCGNEEEASTLFHVMGDQEISRNVITW 203

Query: 77  TAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSM------ 130
           T MI G A  G +  AR  F++MPER+VVSWN+M+ G  + G   E  ++FN M      
Sbjct: 204 TTMITGHAKKGNLKTARMYFDKMPERSVVSWNAMLSGYAQGGAPEETIRLFNDMLSPGNV 263

Query: 131 -PIK----------------------------------NVISWNAMIAGYVECCMMGEAI 155
            P +                                  N     A++  + +C  +  A 
Sbjct: 264 QPDETTWVTVISSCSSLGDPCLSESIVRKLDDTVGFRPNYFVKTALLDMHAKCGNLEAAH 323

Query: 156 VLFEEM---EERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGF 212
            +FE++   + R+ V W +MIS Y R G++     LF +MP+++ VSW +MI G+  NG 
Sbjct: 324 KIFEQLGVYKYRSSVPWNAMISAYARVGDLPSARHLFDKMPQRDTVSWNSMIAGYTQNGE 383

Query: 213 HKESLLLFIEMKGICDNG-NNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEIS-WT 270
             +++ LF EM    D+  +   + S  S        G    A ++     ++  IS + 
Sbjct: 384 SVKAIKLFEEMISSEDSKPDEVTMVSVFSACGHLGELGLGNWAVSILKENHIQISISVYN 443

Query: 271 SMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPP 330
           S+I  Y   G + +A  +F  M  RD V++  +ISG  ++   +E+  L ++M+  G+ P
Sbjct: 444 SLISMYSRCGSMQDAVLIFQEMATRDLVSYNTLISGFAEHGHGMESIELLLKMKEDGIEP 503

Query: 331 LNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIF 390
              T+  +  A      +  G++    L ++    D+    C+I M  + G ++ A  + 
Sbjct: 504 DRITYIAILTACSHAGLLGEGQR----LFESIKFPDVDHYACMIDMLGRAGRLEEAMKLI 559

Query: 391 SNM 393
            +M
Sbjct: 560 QSM 562



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 101/367 (27%), Positives = 166/367 (45%), Gaps = 87/367 (23%)

Query: 11  VVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEM-- 68
           V+  T+ IT ++K+G +  A+  F  MP+R+VVS+NAMLSG+ Q G   E  RLF +M  
Sbjct: 200 VITWTTMITGHAKKGNLKTARMYFDKMPERSVVSWNAMLSGYAQGGAPEETIRLFNDMLS 259

Query: 69  ---PERNVVSWTAMICGLADAGRVC----------------------------------- 90
               + +  +W  +I   +  G  C                                   
Sbjct: 260 PGNVQPDETTWVTVISSCSSLGDPCLSESIVRKLDDTVGFRPNYFVKTALLDMHAKCGNL 319

Query: 91  -EARKLFEEM---PERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYV 146
             A K+FE++     R+ V WN+M+    R G+L  AR +F+ MP ++ +SWN+MIAGY 
Sbjct: 320 EAAHKIFEQLGVYKYRSSVPWNAMISAYARVGDLPSARHLFDKMPQRDTVSWNSMIAGYT 379

Query: 147 ECCMMGEAIVLFEEM--------EERNVVT------------------------------ 168
           +     +AI LFEEM        +E  +V+                              
Sbjct: 380 QNGESVKAIKLFEEMISSEDSKPDEVTMVSVFSACGHLGELGLGNWAVSILKENHIQISI 439

Query: 169 --WTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGI 226
             + S+IS Y R G +++   +F+ M  +++VS+  +I GFA +G   ES+ L ++MK  
Sbjct: 440 SVYNSLISMYSRCGSMQDAVLIFQEMATRDLVSYNTLISGFAEHGHGMESIELLLKMK-- 497

Query: 227 CDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAY 286
            ++G   +  +  +++      G L E Q LF+++   D   +  MID     G++  A 
Sbjct: 498 -EDGIEPDRITYIAILTACSHAGLLGEGQRLFESIKFPDVDHYACMIDMLGRAGRLEEAM 556

Query: 287 YLFHNMP 293
            L  +MP
Sbjct: 557 KLIQSMP 563



 Score =  112 bits (279), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 98/406 (24%), Positives = 164/406 (40%), Gaps = 79/406 (19%)

Query: 157 LFEEMEERNVVTWTSMISGYCRAG-EVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKE 215
           +F      +V  +T M+  Y + G   +    LF+ M R   +                E
Sbjct: 58  IFHAATHPDVRVFTFMLKYYSQIGVRAQVPVSLFKHMLRHCNIKPNTSFYSVMMKSAGSE 117

Query: 216 SLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVP------------- 262
           S+L       +  +G + +    N ++  Y ++G +E A+ LFD +P             
Sbjct: 118 SMLFLAH---VLKSGYDRDHYVRNGILGIYAKYGPIEFARKLFDEMPDRTVADWNVMISG 174

Query: 263 ----------------------VRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAW 300
                                  R+ I+WT+MI G+   G +  A   F  MP+R  V+W
Sbjct: 175 YWKCGNEEEASTLFHVMGDQEISRNVITWTTMITGHAKKGNLKTARMYFDKMPERSVVSW 234

Query: 301 TAMISGLVQNELFVEATYLFMEMRAHG-VPPLNATFSVLFGAAGATANIDLGRQIHCVLM 359
            AM+SG  Q     E   LF +M + G V P   T+  +  +  +  +  L   I   L 
Sbjct: 235 NAMLSGYAQGGAPEETIRLFNDMLSPGNVQPDETTWVTVISSCSSLGDPCLSESIVRKLD 294

Query: 360 KTES-ESDLILENCLISMYAKCGVIDNAYNI----------------------------- 389
            T     +  ++  L+ M+AKCG ++ A+ I                             
Sbjct: 295 DTVGFRPNYFVKTALLDMHAKCGNLEAAHKIFEQLGVYKYRSSVPWNAMISAYARVGDLP 354

Query: 390 -----FSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLES-GTHPNSVTFLGILSAC 443
                F  M  RD VSWNSM+ G++ +G + + +K+FE M+ S  + P+ VT + + SAC
Sbjct: 355 SARHLFDKMPQRDTVSWNSMIAGYTQNGESVKAIKLFEEMISSEDSKPDEVTMVSVFSAC 414

Query: 444 SHAGLVSRG-WELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEA 488
            H G +  G W +  ++     IQ     Y S+I++  R G +++A
Sbjct: 415 GHLGELGLGNWAV--SILKENHIQISISVYNSLISMYSRCGSMQDA 458



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 43/135 (31%), Positives = 76/135 (56%), Gaps = 4/135 (2%)

Query: 3   ERNHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEAR 62
           + NH +  +    S I+ YS+ G + +A  +FQ M  R++VSYN ++SGF ++G   E+ 
Sbjct: 431 KENHIQISISVYNSLISMYSRCGSMQDAVLIFQEMATRDLVSYNTLISGFAEHGHGMESI 490

Query: 63  RLFEEMPERNV----VSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNG 118
            L  +M E  +    +++ A++   + AG + E ++LFE +   +V  +  M+  L R G
Sbjct: 491 ELLLKMKEDGIEPDRITYIAILTACSHAGLLGEGQRLFESIKFPDVDHYACMIDMLGRAG 550

Query: 119 ELNEARKVFNSMPIK 133
            L EA K+  SMP++
Sbjct: 551 RLEEAMKLIQSMPME 565


>gi|296082505|emb|CBI21510.3| unnamed protein product [Vitis vinifera]
          Length = 746

 Score =  313 bits (802), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 198/622 (31%), Positives = 314/622 (50%), Gaps = 61/622 (9%)

Query: 22  SKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMIC 81
           SK   +D A+ +F  MP +N++++++M+S + Q G   EA  +F ++  ++       + 
Sbjct: 95  SKSDRVDNARVVFDKMPHKNLITWSSMVSMYSQQGYSEEALMVFVDLQRKSGEHPNEFV- 153

Query: 82  GLADAGRVCEARKLFEEMPE-----------RNVVSWNSMVVGLIRNGELNEARKVFNSM 130
            LA   R C    + E+  +           ++V    S++    +NG + EAR VF+ +
Sbjct: 154 -LASVIRACTQLGVVEKGAQLHGFVVRSGFDQDVYVGTSLIDFYSKNGNIEEARLVFDQL 212

Query: 131 PIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISG--------------- 175
             K  ++W  +IAGY +C     ++ LF +M E NVV    ++S                
Sbjct: 213 SEKTAVTWTTIIAGYTKCGRSAVSLELFAQMRETNVVPDRYVVSSVLSACSMLEFLEGGK 272

Query: 176 ------------------------YCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNG 211
                                   Y +   V+ G  LF +M  KN++SWT MI G+  N 
Sbjct: 273 QIHAYVLRRGTEMDVSVVNVLIDFYTKCNRVKAGRKLFDQMVVKNIISWTTMISGYMQNS 332

Query: 212 FHKESLLLFIEMK--GICDNGNNCN--VQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEI 267
           F  E++ LF EM   G   +G  C   + SC S     +  GR   A  +   +   DE 
Sbjct: 333 FDWEAMKLFGEMNRLGWKPDGFACTSVLTSCGS--REALEQGRQVHAYTIKANLE-SDEF 389

Query: 268 SWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHG 327
               +ID Y     + +A  +F  M +++ +++ AMI G    E   EA  LF EMR   
Sbjct: 390 VKNGLIDMYAKSNLLIDAKKVFDVMAEQNVISYNAMIEGYSSQEKLSEALELFHEMRVRL 449

Query: 328 VPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAY 387
             P   TF+ L  AA   A++  G+Q H  L+K   +    + N L+ MYAKCG I+ A 
Sbjct: 450 QKPNEFTFAALITAASNLASLRHGQQFHNQLVKMGLDFCPFVTNALVDMYAKCGSIEEAR 509

Query: 388 NIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAG 447
            +F++ + RD+V WNSM+   + HG A E L +F  M++ G  PN VTF+ +LSACSHAG
Sbjct: 510 KMFNSSIWRDVVCWNSMISTHAQHGEAEEALGMFREMMKEGIQPNYVTFVAVLSACSHAG 569

Query: 448 LVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGAL 507
            V  G   FN+M   + I+PG EHY  +++LLGR+GK+ EA+EF+ ++P EP   +W +L
Sbjct: 570 RVEDGLNHFNSM-PGFGIKPGTEHYACVVSLLGRSGKLFEAKEFIEKMPIEPAAIVWRSL 628

Query: 508 LGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGV 567
           L AC    GN E+ ++AA+  +  DP ++ ++++L NI+A+ G   +  K+R  M    V
Sbjct: 629 LSACRIA-GNVELGKYAAEMAISTDPKDSGSYILLSNIFASKGMWADVKKVRDRMDSSEV 687

Query: 568 RKVPGCSWLMRNGGIQMFLSGD 589
            K PG SW+  N  + +F++ D
Sbjct: 688 VKEPGRSWIEVNNKVNVFIARD 709



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 74/289 (25%), Positives = 145/289 (50%), Gaps = 8/289 (2%)

Query: 172 MISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGN 231
           +I+   ++  V+    +F +MP KN+++W++M+  ++  G+ +E+L++F++++    +G 
Sbjct: 90  LINVCSKSDRVDNARVVFDKMPHKNLITWSSMVSMYSQQGYSEEALMVFVDLQR--KSGE 147

Query: 232 NCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVR-----DEISWTSMIDGYLSVGQVSNAY 286
           + N     S+I    + G +E+   L   V VR     D    TS+ID Y   G +  A 
Sbjct: 148 HPNEFVLASVIRACTQLGVVEKGAQLHGFV-VRSGFDQDVYVGTSLIDFYSKNGNIEEAR 206

Query: 287 YLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATA 346
            +F  + ++ AV WT +I+G  +      +  LF +MR   V P     S +  A     
Sbjct: 207 LVFDQLSEKTAVTWTTIIAGYTKCGRSAVSLELFAQMRETNVVPDRYVVSSVLSACSMLE 266

Query: 347 NIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVM 406
            ++ G+QIH  +++  +E D+ + N LI  Y KC  +     +F  MV ++++SW +M+ 
Sbjct: 267 FLEGGKQIHAYVLRRGTEMDVSVVNVLIDFYTKCNRVKAGRKLFDQMVVKNIISWTTMIS 326

Query: 407 GFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWEL 455
           G+  +    E +K+F  M   G  P+      +L++C     + +G ++
Sbjct: 327 GYMQNSFDWEAMKLFGEMNRLGWKPDGFACTSVLTSCGSREALEQGRQV 375



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 67/261 (25%), Positives = 110/261 (42%), Gaps = 60/261 (22%)

Query: 354 IHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGL 413
           IH  ++ +  +SD  L N LI++ +K   +DNA  +F  M  ++L++W+SMV  +S  G 
Sbjct: 71  IHGQIIVSGLQSDTFLANILINVCSKSDRVDNARVVFDKMPHKNLITWSSMVSMYSQQGY 130

Query: 414 ANETLKVFESML-ESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHY 472
           + E L VF  +  +SG HPN      ++ AC+  G+V +G +L       + ++ G +  
Sbjct: 131 SEEALMVFVDLQRKSGEHPNEFVLASVIRACTQLGVVEKGAQLHG-----FVVRSGFDQD 185

Query: 473 V----SMINLLGRAGKIKEAEEFVLRLPFE------------------------------ 498
           V    S+I+   + G I+EA     RL F+                              
Sbjct: 186 VYVGTSLIDFYSKNGNIEEA-----RLVFDQLSEKTAVTWTTIIAGYTKCGRSAVSLELF 240

Query: 499 ---------PDHRIWGALLGACG---FCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIY 546
                    PD  +  ++L AC    F EG  +I  +  +R  E+D        VL + Y
Sbjct: 241 AQMRETNVVPDRYVVSSVLSACSMLEFLEGGKQIHAYVLRRGTEMD---VSVVNVLIDFY 297

Query: 547 AASGRHVEEHKLRMDMGLKGV 567
               R     KL   M +K +
Sbjct: 298 TKCNRVKAGRKLFDQMVVKNI 318


>gi|356528966|ref|XP_003533068.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930-like [Glycine max]
          Length = 712

 Score =  313 bits (802), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 182/563 (32%), Positives = 305/563 (54%), Gaps = 28/563 (4%)

Query: 54  QNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNV----VSWNS 109
           ++G++  AR++F+ +P+  +  W  MI G +          ++  M   N+     ++  
Sbjct: 53  ESGKMIYARQVFDAIPQPTLFIWNTMIKGYSRINHPQNGVSMYLLMLASNIKPDRFTFPF 112

Query: 110 MVVGLIRNGELNEARKVFNSMPIK-----NVISWNAMIAGYVECCMMGEAIVLFEEMEER 164
           ++ G  RN  L   + + N   +K     N+    A I  +  C ++  A  +F+  +  
Sbjct: 113 LLKGFTRNMALQYGKVLLNH-AVKHGFDSNLFVQKAFIHMFSLCRLVDLARKVFDMGDAW 171

Query: 165 NVVTWTSMISGYCRAGEVEEGYCLFRRMPRK----NVVSWTAMIGGFAW-----NGFHKE 215
            VVTW  M+SGY R  + ++   LF  M ++    N V+   M+   +       G H  
Sbjct: 172 EVVTWNIMLSGYNRVKQFKKSKMLFIEMEKRGVSPNSVTLVLMLSACSKLKDLEGGKH-- 229

Query: 216 SLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDG 275
            +  +I   GI +     N+   N +I+ +   G ++EAQ++FD +  RD ISWTS++ G
Sbjct: 230 -IYKYIN-GGIVER----NLILENVLIDMFAACGEMDEAQSVFDNMKNRDVISWTSIVTG 283

Query: 276 YLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATF 335
           + ++GQ+  A   F  +P+RD V+WTAMI G ++   F+EA  LF EM+   V P   T 
Sbjct: 284 FANIGQIDLARKYFDQIPERDYVSWTAMIDGYLRMNRFIEALALFREMQMSNVKPDEFTM 343

Query: 336 SVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVS 395
             +  A      ++LG  +   + K   ++D  + N LI MY KCG +  A  +F  M  
Sbjct: 344 VSILTACAHLGALELGEWVKTYIDKNSIKNDTFVGNALIDMYFKCGNVGKAKKVFKEMHH 403

Query: 396 RDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWEL 455
           +D  +W +M++G + +G   E L +F +M+E+   P+ +T++G+L AC+HAG+V +G   
Sbjct: 404 KDKFTWTAMIVGLAINGHGEEALAMFSNMIEASITPDEITYIGVLCACTHAGMVEKGQSF 463

Query: 456 FNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCE 515
           F +M   + I+P   HY  M++LLGRAG+++EA E ++ +P +P+  +WG+LLGAC    
Sbjct: 464 FISMTMQHGIKPNVTHYGCMVDLLGRAGRLEEAHEVIVNMPVKPNSIVWGSLLGACR-VH 522

Query: 516 GNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSW 575
            N ++AE AAK++LEL+P N   +V+LCNIYAA  R     ++R  M  +G++K PGCS 
Sbjct: 523 KNVQLAEMAAKQILELEPENGAVYVLLCNIYAACKRWENLRQVRKLMMERGIKKTPGCSL 582

Query: 576 LMRNGGIQMFLSGDKIPAQVAEI 598
           +  NG +  F++GD+   Q  EI
Sbjct: 583 MELNGNVYEFVAGDQSHPQSKEI 605



 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 85/269 (31%), Positives = 138/269 (51%), Gaps = 15/269 (5%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWT 77
           I  ++  G +DEA+++F  M  R+V+S+ ++++GF   G++  AR+ F+++PER+ VSWT
Sbjct: 250 IDMFAACGEMDEAQSVFDNMKNRDVISWTSIVTGFANIGQIDLARKYFDQIPERDYVSWT 309

Query: 78  AMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNG------ELNEARKVF-NSM 130
           AMI G     R  EA  LF EM   NV      +V ++         EL E  K + +  
Sbjct: 310 AMIDGYLRMNRFIEALALFREMQMSNVKPDEFTMVSILTACAHLGALELGEWVKTYIDKN 369

Query: 131 PIKN-VISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLF 189
            IKN     NA+I  Y +C  +G+A  +F+EM  ++  TWT+MI G    G  EE   +F
Sbjct: 370 SIKNDTFVGNALIDMYFKCGNVGKAKKVFKEMHHKDKFTWTAMIVGLAINGHGEEALAMF 429

Query: 190 RRMPRKNV----VSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGY 245
             M   ++    +++  ++      G  ++    FI M     +G   NV     M++  
Sbjct: 430 SNMIEASITPDEITYIGVLCACTHAGMVEKGQSFFISM--TMQHGIKPNVTHYGCMVDLL 487

Query: 246 IRFGRLEEAQNLFDTVPVR-DEISWTSMI 273
            R GRLEEA  +   +PV+ + I W S++
Sbjct: 488 GRAGRLEEAHEVIVNMPVKPNSIVWGSLL 516


>gi|449448586|ref|XP_004142047.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Cucumis sativus]
          Length = 1037

 Score =  313 bits (802), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 198/630 (31%), Positives = 316/630 (50%), Gaps = 51/630 (8%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMP----ERNV 73
           +  YS+   +  A+ +F  M  R+ VSYN+++SG +Q G    A  LF +M     + + 
Sbjct: 303 VALYSRSRKLISAERIFSTMNSRDGVSYNSLISGLVQQGFSDRALELFTKMQRDCLKPDC 362

Query: 74  VSWTAMICGLADAG-----------------------------------RVCEARKLFEE 98
           ++  +++   A  G                                    V  A K F  
Sbjct: 363 ITVASLLSACASVGALHKGMQLHSHAIKAGMSADIILEGSLLDLYSKCADVETAHKFFLT 422

Query: 99  MPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLF 158
               N+V WN M+V   +   L+++ ++F  M ++ +I         +  C    A+ L 
Sbjct: 423 TETENIVLWNVMLVAYGQLDNLSDSFEIFRQMQMEGMIPNQFTYPSILRTCTSLGALYLG 482

Query: 159 EEME--------ERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWN 210
           E++         + NV   + +I  Y + G++     + RR+P  +VVSWTAMI G+  +
Sbjct: 483 EQIHTHVIKTGFQLNVYVCSVLIDMYAKYGQLALALRILRRLPEDDVVSWTAMIAGYVQH 542

Query: 211 GFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGY--IRFGRLEEAQNLFDTVPVRDEIS 268
               E+L LF EM+      +N    S  S   G   +R G+   AQ+          I+
Sbjct: 543 DMFSEALQLFEEMEYRGIQFDNIGFASAISACAGIRALRQGQQIHAQSYAAGFGADLSIN 602

Query: 269 WTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGV 328
             ++I  Y   G++  AY  F  + D++ ++W +++SGL Q+  F EA  +F+ M     
Sbjct: 603 -NALISLYARCGRIQEAYLAFEKIGDKNNISWNSLVSGLAQSGYFEEALQVFVRMLRTEA 661

Query: 329 PPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYN 388
                T+     AA + ANI  G+QIH +++KT  +S+  + N LIS+YAK G I +A+ 
Sbjct: 662 EVNMFTYGSAISAAASLANIKQGQQIHSMVLKTGYDSEREVSNSLISLYAKSGSISDAWR 721

Query: 389 IFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGL 448
            F++M  R+++SWN+M+ G+S HG   E L++FE M   G  PN VTF+G+LSACSH GL
Sbjct: 722 EFNDMSERNVISWNAMITGYSQHGCGMEALRLFEEMKVCGIMPNHVTFVGVLSACSHIGL 781

Query: 449 VSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALL 508
           V  G + F +MF ++ + P  EHYV +++LLGRAG++  A E++  +P   D  IW  LL
Sbjct: 782 VKEGLDYFESMFKIHDLVPKSEHYVCVVDLLGRAGQLDRAMEYIKEMPIPADAMIWRTLL 841

Query: 509 GACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVR 568
            AC     N EI E AA  LLEL+P ++  +V++ NIYA S + +     R  M  +GV+
Sbjct: 842 SAC-VIHKNIEIGERAAHHLLELEPEDSATYVLISNIYAVSRQWIHRDWSRKLMKDRGVK 900

Query: 569 KVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
           K PG SW+     +  F +GDK+     +I
Sbjct: 901 KEPGRSWIEVKNAVHAFYAGDKLHPLTNQI 930



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 136/553 (24%), Positives = 234/553 (42%), Gaps = 117/553 (21%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWT 77
           I  YSK G+I+ AK +F  +  +++V++ AM+SG  QNG   EA  LF +M    +    
Sbjct: 202 IDLYSKNGYIESAKKVFNCICMKDIVTWVAMISGLSQNGLEEEAILLFCDMHASEIFPTP 261

Query: 78  AMICGLADAGRVCEARKLFEEMPERNVVSW---------NSMVVGLIRNGELNEARKVFN 128
            ++  +  A    +  +L E++    V+ W         N +V    R+ +L  A ++F+
Sbjct: 262 YVLSSVLSASTKIQLFELGEQL-HCLVIKWGFHSETYVCNGLVALYSRSRKLISAERIFS 320

Query: 129 SMPIKNVISWNAMIAGYVECCMMGEAIVLFEEME----ERNVVTWTSMISG--------- 175
           +M  ++ +S+N++I+G V+      A+ LF +M+    + + +T  S++S          
Sbjct: 321 TMNSRDGVSYNSLISGLVQQGFSDRALELFTKMQRDCLKPDCITVASLLSACASVGALHK 380

Query: 176 --------------------------YCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAW 209
                                     Y +  +VE  +  F     +N+V W  M+  +  
Sbjct: 381 GMQLHSHAIKAGMSADIILEGSLLDLYSKCADVETAHKFFLTTETENIVLWNVMLVAYGQ 440

Query: 210 NGFHKESLLLF--IEMKGICDN------------------------------GNNCNVQS 237
                +S  +F  ++M+G+  N                              G   NV  
Sbjct: 441 LDNLSDSFEIFRQMQMEGMIPNQFTYPSILRTCTSLGALYLGEQIHTHVIKTGFQLNVYV 500

Query: 238 CNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDA 297
           C+ +I+ Y ++G+L  A  +   +P  D +SWT+MI GY                     
Sbjct: 501 CSVLIDMYAKYGQLALALRILRRLPEDDVVSWTAMIAGY--------------------- 539

Query: 298 VAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCV 357
                     VQ+++F EA  LF EM   G+   N  F+    A      +  G+QIH  
Sbjct: 540 ----------VQHDMFSEALQLFEEMEYRGIQFDNIGFASAISACAGIRALRQGQQIHAQ 589

Query: 358 LMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANET 417
                  +DL + N LIS+YA+CG I  AY  F  +  ++ +SWNS+V G +  G   E 
Sbjct: 590 SYAAGFGADLSINNALISLYARCGRIQEAYLAFEKIGDKNNISWNSLVSGLAQSGYFEEA 649

Query: 418 LKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYV--SM 475
           L+VF  ML +    N  T+   +SA +    + +G ++ +    V K     E  V  S+
Sbjct: 650 LQVFVRMLRTEAEVNMFTYGSAISAAASLANIKQGQQIHSM---VLKTGYDSEREVSNSL 706

Query: 476 INLLGRAGKIKEA 488
           I+L  ++G I +A
Sbjct: 707 ISLYAKSGSISDA 719



 Score =  145 bits (367), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 131/546 (23%), Positives = 237/546 (43%), Gaps = 51/546 (9%)

Query: 33  LFQLMPQRNVVS----YNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLAD--- 85
           L   M +R V S    Y  +L G L +G L E  RL   + +        +I  L D   
Sbjct: 45  LMNFMEERGVRSNYQNYLWLLEGCLTSGSLFETMRLHCRISKSGFDGEPLLIDSLVDNYF 104

Query: 86  -AGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAG 144
             G    A K+F+E   R+V SWN M+   +      +   +F  M  + +       AG
Sbjct: 105 RHGDQHGAVKVFDENSNRSVFSWNKMIHVFVAQKSNFQVFCLFRRMLAEGITPNGYTFAG 164

Query: 145 YVECCMMGE-AIVLFEEMEERNV--------VTWTSMISGYCRAGEVEEGYCLFRRMPRK 195
            ++ C+ G+ A    +++  R          +    +I  Y + G +E    +F  +  K
Sbjct: 165 VLKACVGGDIAFNYVKQVHSRTFYYGFDSSPLVANLLIDLYSKNGYIESAKKVFNCICMK 224

Query: 196 NVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQ 255
           ++V+W AMI G + NG  +E++LLF +M     +         +S+++   +    E  +
Sbjct: 225 DIVTWVAMISGLSQNGLEEEAILLFCDMHA---SEIFPTPYVLSSVLSASTKIQLFELGE 281

Query: 256 NLFDTVPVRDEISWTSMIDGYLSVGQVS---------NAYYLFHNMPDRDAVAWTAMISG 306
            L   V     I W    + Y+  G V+         +A  +F  M  RD V++ ++ISG
Sbjct: 282 QLHCLV-----IKWGFHSETYVCNGLVALYSRSRKLISAERIFSTMNSRDGVSYNSLISG 336

Query: 307 LVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESD 366
           LVQ      A  LF +M+   + P   T + L  A  +   +  G Q+H   +K    +D
Sbjct: 337 LVQQGFSDRALELFTKMQRDCLKPDCITVASLLSACASVGALHKGMQLHSHAIKAGMSAD 396

Query: 367 LILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLE 426
           +ILE  L+ +Y+KC  ++ A+  F    + ++V WN M++ +      +++ ++F  M  
Sbjct: 397 IILEGSLLDLYSKCADVETAHKFFLTTETENIVLWNVMLVAYGQLDNLSDSFEIFRQMQM 456

Query: 427 SGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVS----MINLLGRA 482
            G  PN  T+  IL  C+  G +  G ++       + I+ G +  V     +I++  + 
Sbjct: 457 EGMIPNQFTYPSILRTCTSLGALYLGEQI-----HTHVIKTGFQLNVYVCSVLIDMYAKY 511

Query: 483 GKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNA-----EIAEHAAKRLLELDPLNAP 537
           G++  A   + RLP E D   W A++   G+ + +      ++ E    R ++ D +   
Sbjct: 512 GQLALALRILRRLP-EDDVVSWTAMIA--GYVQHDMFSEALQLFEEMEYRGIQFDNIGFA 568

Query: 538 AHVVLC 543
           + +  C
Sbjct: 569 SAISAC 574


>gi|147856457|emb|CAN80769.1| hypothetical protein VITISV_013866 [Vitis vinifera]
          Length = 761

 Score =  313 bits (802), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 175/519 (33%), Positives = 283/519 (54%), Gaps = 42/519 (8%)

Query: 108 NSMVVGLIRNGELNEARKVFNSMPI--KNVISWNAMIAGYVECCMMGEAIVLFEEMEERN 165
           N+++    R G +  ARKVF+ +P   + V  WNAM++GY +    G+A  LF+ M ERN
Sbjct: 134 NAVIDMYARLGPIGHARKVFDEIPDYERKVADWNAMVSGYWKWESEGQAQWLFDVMPERN 193

Query: 166 VVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEM-- 223
           V+TWT+M++GY +  ++E     F  MP ++VVSW AM+ G+A NG  +E L LF EM  
Sbjct: 194 VITWTAMVTGYAKVKDLEAARRYFDCMPERSVVSWNAMLSGYAQNGLAEEVLRLFDEMVN 253

Query: 224 --------------KGICDNGNNCNVQSC----------------NSMINGYIRFGRLEE 253
                               G+ C   S                  ++++ Y + G +  
Sbjct: 254 AGIEPDETTWVTVISACSSRGDPCLAASLVRTLHQKQIQLNCFVRTALLDMYAKCGSIGA 313

Query: 254 AQNLFDTV-PVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNEL 312
           A+ +FD +   R+ ++W +MI  Y  VG + +A  LF+ MP R+ V W +MI+G  QN  
Sbjct: 314 ARRIFDELGAYRNSVTWNAMISAYTRVGNLDSARELFNTMPGRNVVTWNSMIAGYAQNGQ 373

Query: 313 FVEATYLFMEM-RAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILEN 371
              A  LF EM  A  + P   T   +  A G    ++LG  +   L + + +  +   N
Sbjct: 374 SAMAIELFKEMITAKKLTPDEVTMVSVISACGHLGALELGNWVVRFLTENQIKLSISGHN 433

Query: 372 CLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHP 431
            +I MY++CG +++A  +F  M +RD+VS+N+++ GF+ HG   E + +  +M E G  P
Sbjct: 434 AMIFMYSRCGSMEDAKRVFQEMATRDVVSYNTLISGFAAHGHGVEAINLMSTMKEGGIEP 493

Query: 432 NSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEF 491
           + VTF+G+L+ACSHAGL+  G ++F ++ D     P  +HY  M++LLGR G++++A+  
Sbjct: 494 DRVTFIGVLTACSHAGLLEEGRKVFESIKD-----PAIDHYACMVDLLGRVGELEDAKRT 548

Query: 492 VLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGR 551
           + R+P EP   ++G+LL A        E+ E AA +L EL+P N+   ++L NIYA++GR
Sbjct: 549 MERMPMEPHAGVYGSLLNASRI-HKQVELGELAANKLFELEPDNSGNFILLSNIYASAGR 607

Query: 552 HVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDK 590
             +  ++R  M   GV+K  G SW+   G +  F+  D+
Sbjct: 608 WKDVERIREAMKKGGVKKTTGWSWVEYGGKLHKFIVADR 646



 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 125/424 (29%), Positives = 200/424 (47%), Gaps = 56/424 (13%)

Query: 18  ITKYSKRGFIDEAKALFQLMP--QRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVS 75
           I  Y++ G I  A+ +F  +P  +R V  +NAM+SG+ +     +A+ LF+ MPERNV++
Sbjct: 137 IDMYARLGPIGHARKVFDEIPDYERKVADWNAMVSGYWKWESEGQAQWLFDVMPERNVIT 196

Query: 76  WTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNV 135
           WTAM+ G A    +  AR+ F+ MPER+VVSWN+M+ G  +NG   E  ++F+ M    +
Sbjct: 197 WTAMVTGYAKVKDLEAARRYFDCMPERSVVSWNAMLSGYAQNGLAEEVLRLFDEMVNAGI 256

Query: 136 ----ISWNAMIAG-----------------------------------YVECCMMGEAIV 156
                +W  +I+                                    Y +C  +G A  
Sbjct: 257 EPDETTWVTVISACSSRGDPCLAASLVRTLHQKQIQLNCFVRTALLDMYAKCGSIGAARR 316

Query: 157 LFEEM-EERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKE 215
           +F+E+   RN VTW +MIS Y R G ++    LF  MP +NVV+W +MI G+A NG    
Sbjct: 317 IFDELGAYRNSVTWNAMISAYTRVGNLDSARELFNTMPGRNVVTWNSMIAGYAQNGQSAM 376

Query: 216 SLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQ---NLFDTVPVRDEIS-WTS 271
           ++ LF EM  I       +  +  S+I+     G LE             ++  IS   +
Sbjct: 377 AIELFKEM--ITAKKLTPDEVTMVSVISACGHLGALELGNWVVRFLTENQIKLSISGHNA 434

Query: 272 MIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPL 331
           MI  Y   G + +A  +F  M  RD V++  +ISG   +   VEA  L   M+  G+ P 
Sbjct: 435 MIFMYSRCGSMEDAKRVFQEMATRDVVSYNTLISGFAAHGHGVEAINLMSTMKEGGIEPD 494

Query: 332 NATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILEN--CLISMYAKCGVIDNAYNI 389
             TF  +  A      ++ GR++       ES  D  +++  C++ +  + G +++A   
Sbjct: 495 RVTFIGVLTACSHAGLLEEGRKVF------ESIKDPAIDHYACMVDLLGRVGELEDAKRT 548

Query: 390 FSNM 393
              M
Sbjct: 549 MERM 552



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 105/367 (28%), Positives = 170/367 (46%), Gaps = 83/367 (22%)

Query: 7   PKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFE 66
           P+  V+  T+ +T Y+K   ++ A+  F  MP+R+VVS+NAMLSG+ QNG   E  RLF+
Sbjct: 190 PERNVITWTAMVTGYAKVKDLEAARRYFDCMPERSVVSWNAMLSGYAQNGLAEEVLRLFD 249

Query: 67  EMP----ERNVVSW-----------------------------------TAMICGLADAG 87
           EM     E +  +W                                   TA++   A  G
Sbjct: 250 EMVNAGIEPDETTWVTVISACSSRGDPCLAASLVRTLHQKQIQLNCFVRTALLDMYAKCG 309

Query: 88  RVCEARKLFEEM-PERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYV 146
            +  AR++F+E+   RN V+WN+M+    R G L+ AR++FN+MP +NV++WN+MIAGY 
Sbjct: 310 SIGAARRIFDELGAYRNSVTWNAMISAYTRVGNLDSARELFNTMPGRNVVTWNSMIAGYA 369

Query: 147 ECCMMGEAIVLFEEM--------EERNVVT---------------WT------------- 170
           +      AI LF+EM        +E  +V+               W              
Sbjct: 370 QNGQSAMAIELFKEMITAKKLTPDEVTMVSVISACGHLGALELGNWVVRFLTENQIKLSI 429

Query: 171 ----SMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGI 226
               +MI  Y R G +E+   +F+ M  ++VVS+  +I GFA +G   E++ L   MK  
Sbjct: 430 SGHNAMIFMYSRCGSMEDAKRVFQEMATRDVVSYNTLISGFAAHGHGVEAINLMSTMK-- 487

Query: 227 CDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAY 286
            + G   +  +   ++      G LEE + +F+++       +  M+D    VG++ +A 
Sbjct: 488 -EGGIEPDRVTFIGVLTACSHAGLLEEGRKVFESIKDPAIDHYACMVDLLGRVGELEDAK 546

Query: 287 YLFHNMP 293
                MP
Sbjct: 547 RTMERMP 553



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 115/452 (25%), Positives = 186/452 (41%), Gaps = 55/452 (12%)

Query: 156 VLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMP----RKNVVSWTAMI--GGFAW 209
           +LF      NV  +TSM+  Y    +  +   +F  M     R +   +  +I   G   
Sbjct: 55  LLFNSTLNPNVFVFTSMLRFYSHLQDHAKVVLMFEHMQGCGVRPDAFVYPILIKSAGNGG 114

Query: 210 NGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRL------------------ 251
            GFH   L L          G+  +    N++I+ Y R G +                  
Sbjct: 115 IGFHAHVLKL----------GHGSDAFVRNAVIDMYARLGPIGHARKVFDEIPDYERKVA 164

Query: 252 ---------------EEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRD 296
                           +AQ LFD +P R+ I+WT+M+ GY  V  +  A   F  MP+R 
Sbjct: 165 DWNAMVSGYWKWESEGQAQWLFDVMPERNVITWTAMVTGYAKVKDLEAARRYFDCMPERS 224

Query: 297 AVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHC 356
            V+W AM+SG  QN L  E   LF EM   G+ P   T+  +  A  +  +  L   +  
Sbjct: 225 VVSWNAMLSGYAQNGLAEEVLRLFDEMVNAGIEPDETTWVTVISACSSRGDPCLAASLVR 284

Query: 357 VLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNM-VSRDLVSWNSMVMGFSHHGLAN 415
            L + + + +  +   L+ MYAKCG I  A  IF  +   R+ V+WN+M+  ++  G  +
Sbjct: 285 TLHQKQIQLNCFVRTALLDMYAKCGSIGAARRIFDELGAYRNSVTWNAMISAYTRVGNLD 344

Query: 416 ETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSM 475
              ++F +M       N VT+  +++  +  G  +   ELF  M    K+ P     VS+
Sbjct: 345 SARELFNTM----PGRNVVTWNSMIAGYAQNGQSAMAIELFKEMITAKKLTPDEVTMVSV 400

Query: 476 INLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLN 535
           I+  G  G + E   +V+R   E   ++  +   A  F        E A +   E+   +
Sbjct: 401 ISACGHLGAL-ELGNWVVRFLTENQIKLSISGHNAMIFMYSRCGSMEDAKRVFQEMATRD 459

Query: 536 APAHVVLCNIYAASGRHVEEHKLRMDMGLKGV 567
             ++  L + +AA G  VE   L   M   G+
Sbjct: 460 VVSYNTLISGFAAHGHGVEAINLMSTMKEGGI 491



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 63/276 (22%), Positives = 110/276 (39%), Gaps = 29/276 (10%)

Query: 285 AYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGA 344
            + LF++  + +   +T+M+      +   +   +F  M+  GV P    + +L  +AG 
Sbjct: 53  THLLFNSTLNPNVFVFTSMLRFYSHLQDHAKVVLMFEHMQGCGVRPDAFVYPILIKSAG- 111

Query: 345 TANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNM--VSRDLVSWN 402
               + G   H  ++K    SD  + N +I MYA+ G I +A  +F  +    R +  WN
Sbjct: 112 ----NGGIGFHAHVLKLGHGSDAFVRNAVIDMYARLGPIGHARKVFDEIPDYERKVADWN 167

Query: 403 SMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDV 462
           +MV G+       +   +F+ M E     N +T+  +++  +    +      F+ M   
Sbjct: 168 AMVSGYWKWESEGQAQWLFDVMPER----NVITWTAMVTGYAKVKDLEAARRYFDCM--- 220

Query: 463 YKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRL-------PFEPDHRIWGALLGACGFCE 515
                 PE  V   N +          E VLRL         EPD   W  ++ AC    
Sbjct: 221 ------PERSVVSWNAMLSGYAQNGLAEEVLRLFDEMVNAGIEPDETTWVTVISACS-SR 273

Query: 516 GNAEIAEHAAKRLLELD-PLNAPAHVVLCNIYAASG 550
           G+  +A    + L +    LN      L ++YA  G
Sbjct: 274 GDPCLAASLVRTLHQKQIQLNCFVRTALLDMYAKCG 309


>gi|326490792|dbj|BAJ90063.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 754

 Score =  313 bits (801), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 192/606 (31%), Positives = 316/606 (52%), Gaps = 28/606 (4%)

Query: 6   HPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLF 65
           HP    V L   +T Y++ G +  A+ LF  MP  N+ + NA+LS       L +  RLF
Sbjct: 41  HPPPTYV-LNHLLTAYARSGRLPLARRLFDAMPDPNLFTRNALLSALAHARLLPDMDRLF 99

Query: 66  EEMPERNVVSWTAMICGLADAGRVCEARK-----LFEEM--------PERNVVSWNSMVV 112
             MP+R+ VS+ A+I G + AG    A       L EE         P R  ++ + MV+
Sbjct: 100 ASMPQRDAVSYNALIAGFSGAGAPARAAGAYRALLREEAVVDGARVRPSR--ITMSGMVM 157

Query: 113 GLIRNGELNEARKVFNSMPI----KNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVT 168
                G+    R+V   +          +W+ ++  Y +  ++G+A  +F+EM  +NVV 
Sbjct: 158 AASALGDRALGRQVHCQIMRLGFGAYAFTWSPLVDMYAKMGLIGDAKRVFDEMVVKNVVM 217

Query: 169 WTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICD 228
           + +MI+G  R   VEE   +F  M  ++ ++WT M+ G   NG   E+L +F  M+    
Sbjct: 218 YNTMITGLLRCKMVEEARGVFEAMVDRDSITWTTMVTGLTQNGLQSEALDVFRRMRA--- 274

Query: 229 NGNNCNVQSCNSMINGYIRFGRLEEAQNL----FDTVPVRDEISWTSMIDGYLSVGQVSN 284
            G   +  +  S++         EE + +      T+   +    ++++D Y     +  
Sbjct: 275 EGVGIDQYTFGSILTACGALAASEEGKQIHAYTIRTLYDGNIFVGSALVDMYSKCRSIRL 334

Query: 285 AYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGA 344
           A  +F  M  ++ ++WTAMI G  QN    EA  +F EM+  G+ P + T   +  +   
Sbjct: 335 AEAVFRRMTCKNIISWTAMIVGYGQNGCGEEAVRVFSEMQTDGIKPNDFTLGSVISSCAN 394

Query: 345 TANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSM 404
            A+++ G Q HC+ + +     + + + L+++Y KCG I++A+ +F  M   D VS+ ++
Sbjct: 395 LASLEEGAQFHCMALVSGLRPYITVSSALVTLYGKCGSIEDAHRLFDEMPFHDQVSYTAL 454

Query: 405 VMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYK 464
           V G++  G A ET+ +FE ML  G  PN VTF+G+LSACS +GLV +G   F++M   + 
Sbjct: 455 VSGYAQFGKAKETIDLFEKMLLKGVKPNGVTFIGVLSACSRSGLVEKGCSYFHSMQQDHG 514

Query: 465 IQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHA 524
           I    +HY  MI+L  R+G++KEAEEF+ ++P  PD   W  LL AC    G+ EI + A
Sbjct: 515 IVLLDDHYTCMIDLYSRSGRLKEAEEFIRQMPRCPDAIGWATLLSACRL-RGDMEIGKWA 573

Query: 525 AKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQM 584
           A+ LL+ DP N  ++V+LC+++A+ G   E   LR  M  + V+K PGCSW+     + +
Sbjct: 574 AENLLKTDPQNPASYVLLCSMHASKGEWSEVALLRRGMRDRQVKKEPGCSWIKYKNRVHI 633

Query: 585 FLSGDK 590
           F + D+
Sbjct: 634 FSADDQ 639


>gi|356552027|ref|XP_003544373.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Glycine max]
          Length = 986

 Score =  312 bits (800), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 201/591 (34%), Positives = 309/591 (52%), Gaps = 37/591 (6%)

Query: 41  NVVSYNAMLSGFLQNGRLSEARRLFEEMPER---NVVSWTAMICGLADAGRVCEARKLFE 97
           NV   NA++S + + G L  A  +F+++  R   ++VSW +++     A     A  LF 
Sbjct: 293 NVFVCNAVVSMYGKCGALRHAHNMFDDLCHRGIQDLVSWNSVVSAYMWASDANTALALFH 352

Query: 98  EMPERNVVSWN--SMVVGLIRNGELNEA---RKV----FNSMPIKNVISWNAMIAGYVEC 148
           +M  R+++S +  S+V  L     L  +   R+V      S  + +V   NA++  Y +C
Sbjct: 353 KMTTRHLMSPDVISLVNILPACASLAASLRGRQVHGFSIRSGLVDDVFVGNAVVDMYAKC 412

Query: 149 CMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKN----VVSWTAMI 204
             M EA  +F+ M+ ++VV+W +M++GY +AG +E    LF RM  +N    VV+WTA+I
Sbjct: 413 GKMEEANKVFQRMKFKDVVSWNAMVTGYSQAGRLEHALSLFERMTEENIELDVVTWTAVI 472

Query: 205 GGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQ--------- 255
            G+A  G   E+L +F +M   CD G+  NV +  S+++  +  G L   +         
Sbjct: 473 TGYAQRGQGCEALDVFRQM---CDCGSRPNVVTLVSLLSACVSVGALLHGKETHCYAIKF 529

Query: 256 --NLFDTVPVRDEISWTS-MIDGYLSVGQVSNAYYLFHNM--PDRDAVAWTAMISGLVQN 310
             NL    P  D++   + +ID Y        A  +F ++   DRD V WT MI G  Q+
Sbjct: 530 ILNLDGPDPGADDLKVINGLIDMYAKCQSTEVARKMFDSVSPKDRDVVTWTVMIGGYAQH 589

Query: 311 ELFVEATYLFMEM--RAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESD-L 367
                A  LF  M      + P + T S    A    A +  GRQ+H  +++    S  L
Sbjct: 590 GDANNALQLFSGMFKMDKSIKPNDFTLSCALVACARLAALRFGRQVHAYVLRNFYGSVML 649

Query: 368 ILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLES 427
            + NCLI MY+K G +D A  +F NM  R+ VSW S++ G+  HG   + L+VF+ M + 
Sbjct: 650 FVANCLIDMYSKSGDVDTAQIVFDNMPQRNAVSWTSLMTGYGMHGRGEDALRVFDEMRKV 709

Query: 428 GTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKE 487
              P+ +TFL +L ACSH+G+V  G   FN M   + + PGPEHY  M++L GRAG++ E
Sbjct: 710 PLVPDGITFLVVLYACSHSGMVDHGINFFNRMSKDFGVDPGPEHYACMVDLWGRAGRLGE 769

Query: 488 AEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYA 547
           A + +  +P EP   +W ALL AC     N E+ E AA RLLEL+  N  ++ +L NIYA
Sbjct: 770 AMKLINEMPMEPTPVVWVALLSACRL-HSNVELGEFAANRLLELESGNDGSYTLLSNIYA 828

Query: 548 ASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
            + R  +  ++R  M   G++K PGCSW+    G+  F  GD+   Q  +I
Sbjct: 829 NARRWKDVARIRYTMKRTGIKKRPGCSWIQGRKGVATFYVGDRSHPQSQQI 879



 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 93/319 (29%), Positives = 151/319 (47%), Gaps = 62/319 (19%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERN----V 73
           +  Y+K G ++EA  +FQ M  ++VVS+NAM++G+ Q GRL  A  LFE M E N    V
Sbjct: 406 VDMYAKCGKMEEANKVFQRMKFKDVVSWNAMVTGYSQAGRLEHALSLFERMTEENIELDV 465

Query: 74  VSWTAMICGLADAGRVCEARKLFEEM----PERNVVSWNSMVVGLIRNGELNEARKVFNS 129
           V+WTA+I G A  G+ CEA  +F +M       NVV+  S++   +  G L   ++  + 
Sbjct: 466 VTWTAVITGYAQRGQGCEALDVFRQMCDCGSRPNVVTLVSLLSACVSVGALLHGKET-HC 524

Query: 130 MPIKNVISW-------------NAMIAGYVECCMMGEAIVLFEEM--EERNVVTWTSMIS 174
             IK +++              N +I  Y +C     A  +F+ +  ++R+VVTWT MI 
Sbjct: 525 YAIKFILNLDGPDPGADDLKVINGLIDMYAKCQSTEVARKMFDSVSPKDRDVVTWTVMIG 584

Query: 175 GYCRAGEVEEGYCLFRRM---------------------PRKNVVSWTAMIGGFAWNGFH 213
           GY + G+      LF  M                      R   + +   +  +    F+
Sbjct: 585 GYAQHGDANNALQLFSGMFKMDKSIKPNDFTLSCALVACARLAALRFGRQVHAYVLRNFY 644

Query: 214 KESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMI 273
             S++LF+                 N +I+ Y + G ++ AQ +FD +P R+ +SWTS++
Sbjct: 645 G-SVMLFV----------------ANCLIDMYSKSGDVDTAQIVFDNMPQRNAVSWTSLM 687

Query: 274 DGYLSVGQVSNAYYLFHNM 292
            GY   G+  +A  +F  M
Sbjct: 688 TGYGMHGRGEDALRVFDEM 706



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 94/402 (23%), Positives = 167/402 (41%), Gaps = 55/402 (13%)

Query: 141 MIAGYVECCMMGEAIVLFEEM--EERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVV 198
           +I  Y+       AI+L E +     +V  W  +I      G   + + L+R+M     +
Sbjct: 197 LIGTYIASNSTAYAILLLERLPPSPSSVFWWNQLIRRALHLGSPRDVFTLYRQM---KSL 253

Query: 199 SWTAMIGGFAW----NGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEA 254
            WT     F +            L       +  +G   NV  CN++++ Y + G L  A
Sbjct: 254 GWTPDHYTFPFVFKACANLSSLSLGASLHATVSRSGFASNVFVCNAVVSMYGKCGALRHA 313

Query: 255 QNLFDTV---PVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNE 311
            N+FD +    ++D +SW S++  Y+     + A  LFH M  R  ++            
Sbjct: 314 HNMFDDLCHRGIQDLVSWNSVVSAYMWASDANTALALFHKMTTRHLMS------------ 361

Query: 312 LFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILEN 371
                            P + +  ++L   A   A++  GRQ+H   +++    D+ + N
Sbjct: 362 -----------------PDVISLVNILPACASLAASLR-GRQVHGFSIRSGLVDDVFVGN 403

Query: 372 CLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHP 431
            ++ MYAKCG ++ A  +F  M  +D+VSWN+MV G+S  G     L +FE M E     
Sbjct: 404 AVVDMYAKCGKMEEANKVFQRMKFKDVVSWNAMVTGYSQAGRLEHALSLFERMTEENIEL 463

Query: 432 NSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEE- 490
           + VT+  +++  +  G      ++F  M D    +P     VS+++     G +   +E 
Sbjct: 464 DVVTWTAVITGYAQRGQGCEALDVFRQMCDCGS-RPNVVTLVSLLSACVSVGALLHGKET 522

Query: 491 ------FVLRL----PFEPDHRIWGALLGACGFCEGNAEIAE 522
                 F+L L    P   D ++   L+     C+ + E+A 
Sbjct: 523 HCYAIKFILNLDGPDPGADDLKVINGLIDMYAKCQ-STEVAR 563



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 69/276 (25%), Positives = 131/276 (47%), Gaps = 19/276 (6%)

Query: 270 TSMIDGYLSVGQVSNAYYLFHNMPDRDAVA--WTAMISGLVQNELFVEATYLFMEMRAHG 327
           T++I  Y++    + A  L   +P   +    W  +I   +      +   L+ +M++ G
Sbjct: 195 TNLIGTYIASNSTAYAILLLERLPPSPSSVFWWNQLIRRALHLGSPRDVFTLYRQMKSLG 254

Query: 328 VPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAY 387
             P + TF  +F A    +++ LG  +H  + ++   S++ + N ++SMY KCG + +A+
Sbjct: 255 WTPDHYTFPFVFKACANLSSLSLGASLHATVSRSGFASNVFVCNAVVSMYGKCGALRHAH 314

Query: 388 NIFSNMVSR---DLVSWNSMVMGFSHHGLANETLKVFESMLESG-THPNSVTFLGILSAC 443
           N+F ++  R   DLVSWNS+V  +     AN  L +F  M       P+ ++ + IL AC
Sbjct: 315 NMFDDLCHRGIQDLVSWNSVVSAYMWASDANTALALFHKMTTRHLMSPDVISLVNILPAC 374

Query: 444 SHAGLVSRGWELFNAMFDVYKIQPGPEHYV----SMINLLGRAGKIKEAEEFVLRLPFEP 499
           +      RG ++       + I+ G    V    +++++  + GK++EA +   R+ F+ 
Sbjct: 375 ASLAASLRGRQVHG-----FSIRSGLVDDVFVGNAVVDMYAKCGKMEEANKVFQRMKFK- 428

Query: 500 DHRIWGALL---GACGFCEGNAEIAEHAAKRLLELD 532
           D   W A++      G  E    + E   +  +ELD
Sbjct: 429 DVVSWNAMVTGYSQAGRLEHALSLFERMTEENIELD 464



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 88/367 (23%), Positives = 159/367 (43%), Gaps = 75/367 (20%)

Query: 11  VVHLTSSITKYSKRGFIDEAKALFQLMPQRN----VVSYNAMLSGFLQNGRLSEARRLFE 66
           VV   + +T YS+ G ++ A +LF+ M + N    VV++ A+++G+ Q G+  EA  +F 
Sbjct: 430 VVSWNAMVTGYSQAGRLEHALSLFERMTEENIELDVVTWTAVITGYAQRGQGCEALDVFR 489

Query: 67  EM----PERNVVSWTAM---------------------------------------ICGL 83
           +M       NVV+  ++                                       I GL
Sbjct: 490 QMCDCGSRPNVVTLVSLLSACVSVGALLHGKETHCYAIKFILNLDGPDPGADDLKVINGL 549

Query: 84  ADAGRVCE----ARKLFEEM--PERNVVSWNSMVVGLIRNGELNEARKVFNSM-PIKNVI 136
            D    C+    ARK+F+ +   +R+VV+W  M+ G  ++G+ N A ++F+ M  +   I
Sbjct: 550 IDMYAKCQSTEVARKMFDSVSPKDRDVVTWTVMIGGYAQHGDANNALQLFSGMFKMDKSI 609

Query: 137 SWN--AMIAGYVECCMMG--------EAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGY 186
             N   +    V C  +          A VL        +     +I  Y ++G+V+   
Sbjct: 610 KPNDFTLSCALVACARLAALRFGRQVHAYVLRNFYGSVMLFVANCLIDMYSKSGDVDTAQ 669

Query: 187 CLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGI--CDNGNNCNVQ----SCNS 240
            +F  MP++N VSWT+++ G+  +G  +++L +F EM+ +    +G    V     S + 
Sbjct: 670 IVFDNMPQRNAVSWTSLMTGYGMHGRGEDALRVFDEMRKVPLVPDGITFLVVLYACSHSG 729

Query: 241 MINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMP-DRDAVA 299
           M++  I F         F   P  +   +  M+D +   G++  A  L + MP +   V 
Sbjct: 730 MVDHGINF--FNRMSKDFGVDPGPEH--YACMVDLWGRAGRLGEAMKLINEMPMEPTPVV 785

Query: 300 WTAMISG 306
           W A++S 
Sbjct: 786 WVALLSA 792


>gi|449497733|ref|XP_004160501.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g13650-like [Cucumis sativus]
          Length = 1037

 Score =  312 bits (799), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 198/630 (31%), Positives = 315/630 (50%), Gaps = 51/630 (8%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMP----ERNV 73
           +  YS+   +  A+ +F  M  R+ VSYN+++SG +Q G    A  LF +M     + + 
Sbjct: 303 VALYSRSRKLISAERIFSTMNSRDGVSYNSLISGLVQQGFSDRALELFTKMQRDCLKPDC 362

Query: 74  VSWTAMICGLADAG-----------------------------------RVCEARKLFEE 98
           ++  +++   A  G                                    V  A K F  
Sbjct: 363 ITVASLLSACASVGALHKGMQLHSHAIKAGMSADIILEGSLLDLYSKCADVETAHKFFLX 422

Query: 99  MPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLF 158
               N+V WN M+V   +   L+++ ++F  M ++ +I         +  C    A+ L 
Sbjct: 423 TETENIVLWNVMLVAYGQLDNLSDSFEIFRQMQMEGMIPNQFTYPSILRTCTSLGALYLG 482

Query: 159 EEME--------ERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWN 210
           E++         + NV   + +I  Y + G++     + RR+P  +VVSWTAMI G+  +
Sbjct: 483 EQIHTHVIKTGFQLNVYVCSVLIDMYAKYGQLALALRILRRLPEDDVVSWTAMIAGYVQH 542

Query: 211 GFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGY--IRFGRLEEAQNLFDTVPVRDEIS 268
               E+L LF EM+      +N    S  S   G   +R G+   AQ+          I+
Sbjct: 543 DMFSEALQLFEEMEYRGIQFDNIGFASAISACAGIRALRQGQQIHAQSYAAGFGADLSIN 602

Query: 269 WTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGV 328
             ++I  Y   G++  AY  F  + D++ ++W +++SGL Q+  F EA  +F+ M     
Sbjct: 603 -NALISLYARCGRIQEAYLAFEKIGDKNNISWNSLVSGLAQSGYFEEALQVFVRMLRTEA 661

Query: 329 PPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYN 388
                T+     AA + ANI  G+QIH +++KT  +S+  + N LIS+YAK G I +A+ 
Sbjct: 662 EVNMFTYGSAISAAASLANIKQGQQIHSMVLKTGYDSEREVSNSLISLYAKSGSISDAWR 721

Query: 389 IFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGL 448
            F++M  R+++SWN+M+ G+S HG   E L++FE M   G  PN VTF+G+LSACSH GL
Sbjct: 722 EFNDMSERNVISWNAMITGYSQHGCGMEALRLFEEMKVCGIMPNHVTFVGVLSACSHIGL 781

Query: 449 VSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALL 508
           V  G + F +MF ++ + P  EHYV +++LLGRAG++  A E++  +P   D  IW  LL
Sbjct: 782 VKEGLDYFESMFKIHDLVPKSEHYVCVVDLLGRAGQLDRAMEYIKEMPIPADAMIWRTLL 841

Query: 509 GACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVR 568
            AC     N EI E AA  LLEL+P ++  +V++ NIYA S + +     R  M   GV+
Sbjct: 842 SAC-VIHKNIEIGERAAHHLLELEPEDSATYVLISNIYAVSRQWIHRDWSRKLMKDXGVK 900

Query: 569 KVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
           K PG SW+     +  F +GDK+     +I
Sbjct: 901 KEPGRSWIEVKNAVHAFYAGDKLHPLTNQI 930



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 136/553 (24%), Positives = 234/553 (42%), Gaps = 117/553 (21%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWT 77
           I  YSK G+I+ AK +F  +  +++V++ AM+SG  QNG   EA  LF +M    +    
Sbjct: 202 IDLYSKNGYIESAKKVFNCICMKDIVTWVAMISGLSQNGLEEEAILLFCDMHASEIFPTP 261

Query: 78  AMICGLADAGRVCEARKLFEEMPERNVVSW---------NSMVVGLIRNGELNEARKVFN 128
            ++  +  A    +  +L E++    V+ W         N +V    R+ +L  A ++F+
Sbjct: 262 YVLSSVLSASTKIQLFELGEQL-HCLVIKWGFHSETYVCNGLVALYSRSRKLISAERIFS 320

Query: 129 SMPIKNVISWNAMIAGYVECCMMGEAIVLFEEME----ERNVVTWTSMISG--------- 175
           +M  ++ +S+N++I+G V+      A+ LF +M+    + + +T  S++S          
Sbjct: 321 TMNSRDGVSYNSLISGLVQQGFSDRALELFTKMQRDCLKPDCITVASLLSACASVGALHK 380

Query: 176 --------------------------YCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAW 209
                                     Y +  +VE  +  F     +N+V W  M+  +  
Sbjct: 381 GMQLHSHAIKAGMSADIILEGSLLDLYSKCADVETAHKFFLXTETENIVLWNVMLVAYGQ 440

Query: 210 NGFHKESLLLF--IEMKGICDN------------------------------GNNCNVQS 237
                +S  +F  ++M+G+  N                              G   NV  
Sbjct: 441 LDNLSDSFEIFRQMQMEGMIPNQFTYPSILRTCTSLGALYLGEQIHTHVIKTGFQLNVYV 500

Query: 238 CNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDA 297
           C+ +I+ Y ++G+L  A  +   +P  D +SWT+MI GY                     
Sbjct: 501 CSVLIDMYAKYGQLALALRILRRLPEDDVVSWTAMIAGY--------------------- 539

Query: 298 VAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCV 357
                     VQ+++F EA  LF EM   G+   N  F+    A      +  G+QIH  
Sbjct: 540 ----------VQHDMFSEALQLFEEMEYRGIQFDNIGFASAISACAGIRALRQGQQIHAQ 589

Query: 358 LMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANET 417
                  +DL + N LIS+YA+CG I  AY  F  +  ++ +SWNS+V G +  G   E 
Sbjct: 590 SYAAGFGADLSINNALISLYARCGRIQEAYLAFEKIGDKNNISWNSLVSGLAQSGYFEEA 649

Query: 418 LKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYV--SM 475
           L+VF  ML +    N  T+   +SA +    + +G ++ +    V K     E  V  S+
Sbjct: 650 LQVFVRMLRTEAEVNMFTYGSAISAAASLANIKQGQQIHSM---VLKTGYDSEREVSNSL 706

Query: 476 INLLGRAGKIKEA 488
           I+L  ++G I +A
Sbjct: 707 ISLYAKSGSISDA 719



 Score =  145 bits (366), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 131/546 (23%), Positives = 237/546 (43%), Gaps = 51/546 (9%)

Query: 33  LFQLMPQRNVVS----YNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLAD--- 85
           L   M +R V S    Y  +L G L +G L E  RL   + +        +I  L D   
Sbjct: 45  LMNFMEERGVRSNYQNYLWLLEGCLTSGSLFETMRLHCRISKSGFDGEPLLIDSLVDNYF 104

Query: 86  -AGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAG 144
             G    A K+F+E   R+V SWN M+   +      +   +F  M  + +       AG
Sbjct: 105 RHGDQHGAVKVFDENSNRSVFSWNKMIHVFVAQKSNFQVFCLFRRMLAEGITPNGYTFAG 164

Query: 145 YVECCMMGE-AIVLFEEMEERNV--------VTWTSMISGYCRAGEVEEGYCLFRRMPRK 195
            ++ C+ G+ A    +++  R          +    +I  Y + G +E    +F  +  K
Sbjct: 165 VLKACVGGDIAFNYVKQVHSRTFYYGFDSSPLVANLLIDLYSKNGYIESAKKVFNCICMK 224

Query: 196 NVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQ 255
           ++V+W AMI G + NG  +E++LLF +M     +         +S+++   +    E  +
Sbjct: 225 DIVTWVAMISGLSQNGLEEEAILLFCDMHA---SEIFPTPYVLSSVLSASTKIQLFELGE 281

Query: 256 NLFDTVPVRDEISWTSMIDGYLSVGQVS---------NAYYLFHNMPDRDAVAWTAMISG 306
            L   V     I W    + Y+  G V+         +A  +F  M  RD V++ ++ISG
Sbjct: 282 QLHCLV-----IKWGFHSETYVCNGLVALYSRSRKLISAERIFSTMNSRDGVSYNSLISG 336

Query: 307 LVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESD 366
           LVQ      A  LF +M+   + P   T + L  A  +   +  G Q+H   +K    +D
Sbjct: 337 LVQQGFSDRALELFTKMQRDCLKPDCITVASLLSACASVGALHKGMQLHSHAIKAGMSAD 396

Query: 367 LILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLE 426
           +ILE  L+ +Y+KC  ++ A+  F    + ++V WN M++ +      +++ ++F  M  
Sbjct: 397 IILEGSLLDLYSKCADVETAHKFFLXTETENIVLWNVMLVAYGQLDNLSDSFEIFRQMQM 456

Query: 427 SGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVS----MINLLGRA 482
            G  PN  T+  IL  C+  G +  G ++       + I+ G +  V     +I++  + 
Sbjct: 457 EGMIPNQFTYPSILRTCTSLGALYLGEQI-----HTHVIKTGFQLNVYVCSVLIDMYAKY 511

Query: 483 GKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNA-----EIAEHAAKRLLELDPLNAP 537
           G++  A   + RLP E D   W A++   G+ + +      ++ E    R ++ D +   
Sbjct: 512 GQLALALRILRRLP-EDDVVSWTAMIA--GYVQHDMFSEALQLFEEMEYRGIQFDNIGFA 568

Query: 538 AHVVLC 543
           + +  C
Sbjct: 569 SAISAC 574


>gi|357521295|ref|XP_003630936.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355524958|gb|AET05412.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 959

 Score =  311 bits (798), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 206/644 (31%), Positives = 316/644 (49%), Gaps = 73/644 (11%)

Query: 15  TSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMP----E 70
           +S I  Y+  G+I +AK LF  +P R+ + +N ML+G+++NG  + A   F+EM     +
Sbjct: 216 SSLIKLYTDNGYIHDAKYLFDELPVRDCILWNVMLNGYVKNGDFNSALGTFQEMRNSCVK 275

Query: 71  RNVVSWTAMICGLADAGRVCEARKL--------FEEMPERNVVSWNSMVVGLIRNGELNE 122
            N VS+  ++   A  G V    +L        FE  P       N+++    + G L +
Sbjct: 276 PNSVSFVCLLSVCATRGIVRAGIQLHGLVIRSGFESDP----TVANTIITMYSKCGNLFD 331

Query: 123 ARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNV----VTWTSMISG--- 175
           ARK+F+ MP  + ++WN +IAGYV+     EA+ LF+ M    V    +T+ S +     
Sbjct: 332 ARKIFDIMPQTDTVTWNGLIAGYVQNGFTDEAVALFKAMVTSGVKLDSITFASFLPSVLK 391

Query: 176 -----YCR---------------------------AGEVEEGYCLFRRMPRKNVVSWTAM 203
                YC+                            G+VE     F++    +V   TAM
Sbjct: 392 SGSLKYCKEVHSYIVRHGVPFDVYLKSALVDIYFKGGDVEMACKTFQQNTLVDVAVCTAM 451

Query: 204 IGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLF----- 258
           I G+  NG + E+L LF   + +   G   N  +  S++        L+  + L      
Sbjct: 452 ISGYVLNGLNVEALNLF---RWLIQEGMVPNCLTMASVLPACAALASLKLGKELHCDILK 508

Query: 259 ----DTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFV 314
               +   V   I++      Y   G++  AY  F  MP +D+V W  MI    QN    
Sbjct: 509 KGLENVCQVGSSITYM-----YAKSGRLDLAYQFFRRMPVKDSVCWNLMIVSFSQNGKPE 563

Query: 315 EATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLI 374
            A  LF +M   G    + + S    A      +  G+++HC +++    SD  + + LI
Sbjct: 564 LAIDLFRQMGTSGTKFDSVSLSATLSACANYPALYYGKELHCFVVRNSFISDTFVASTLI 623

Query: 375 SMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSV 434
            MY+KCG +  A ++F  M  ++ VSWNS++  + +HG   E L +F  M+E+G  P+ V
Sbjct: 624 DMYSKCGKLALARSVFDMMDWKNEVSWNSIIAAYGNHGRPRECLDLFHEMVEAGIQPDHV 683

Query: 435 TFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLR 494
           TFL I+SAC HAGLV  G   F  M + Y I    EH+  M++L GRAG++ EA + +  
Sbjct: 684 TFLVIMSACGHAGLVDEGIYYFRCMTEEYGICARMEHFACMVDLYGRAGRLHEAFDTIKS 743

Query: 495 LPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVE 554
           +PF PD   WG+LLGAC    GN E+A+ A+K L+ELDP N+  +V+L N++A +G    
Sbjct: 744 MPFTPDAGTWGSLLGACRL-HGNVELAKLASKHLVELDPNNSGYYVLLSNVHAGAGEWES 802

Query: 555 EHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
             K+R  M  KGV+K+PG SW+  NGG  MF + D    Q  EI
Sbjct: 803 VLKVRSLMKEKGVQKIPGYSWIDVNGGTHMFSAADGCHPQSVEI 846



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 110/463 (23%), Positives = 199/463 (42%), Gaps = 28/463 (6%)

Query: 7   PKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNV----VSYNAMLSGFLQNGRLSEAR 62
           P++  V     I  Y + GF DEA ALF+ M    V    +++ + L   L++G L   +
Sbjct: 340 PQTDTVTWNGLIAGYVQNGFTDEAVALFKAMVTSGVKLDSITFASFLPSVLKSGSLKYCK 399

Query: 63  RLFEEMPERNVVSWTAMICGLAD----AGRVCEARKLFEEMPERNVVSWNSMVVGLIRNG 118
            +   +    V     +   L D     G V  A K F++    +V    +M+ G + NG
Sbjct: 400 EVHSYIVRHGVPFDVYLKSALVDIYFKGGDVEMACKTFQQNTLVDVAVCTAMISGYVLNG 459

Query: 119 ELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEME--------ERNVVTWT 170
              EA  +F  +  + ++     +A  +  C    ++ L +E+         E      +
Sbjct: 460 LNVEALNLFRWLIQEGMVPNCLTMASVLPACAALASLKLGKELHCDILKKGLENVCQVGS 519

Query: 171 SMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNG 230
           S+   Y ++G ++  Y  FRRMP K+ V W  MI  F+ NG  + ++ LF +M     +G
Sbjct: 520 SITYMYAKSGRLDLAYQFFRRMPVKDSVCWNLMIVSFSQNGKPELAIDLFRQMG---TSG 576

Query: 231 NNCNVQSCNSMINGYIRFGRLEEAQNLFDTVP----VRDEISWTSMIDGYLSVGQVSNAY 286
              +  S ++ ++    +  L   + L   V     + D    +++ID Y   G+++ A 
Sbjct: 577 TKFDSVSLSATLSACANYPALYYGKELHCFVVRNSFISDTFVASTLIDMYSKCGKLALAR 636

Query: 287 YLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATA 346
            +F  M  ++ V+W ++I+    +    E   LF EM   G+ P + TF V+  A G   
Sbjct: 637 SVFDMMDWKNEVSWNSIIAAYGNHGRPRECLDLFHEMVEAGIQPDHVTFLVIMSACGHAG 696

Query: 347 NIDLG-RQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNM-VSRDLVSWNSM 404
            +D G     C+  +    + +    C++ +Y + G +  A++   +M  + D  +W S+
Sbjct: 697 LVDEGIYYFRCMTEEYGICARMEHFACMVDLYGRAGRLHEAFDTIKSMPFTPDAGTWGSL 756

Query: 405 VMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAG 447
           +     HG  N  L    S       PN+  +  +LS   HAG
Sbjct: 757 LGACRLHG--NVELAKLASKHLVELDPNNSGYYVLLSNV-HAG 796



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 57/214 (26%), Positives = 95/214 (44%), Gaps = 2/214 (0%)

Query: 297 AVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHC 356
           ++ W  +I G      F  A   F  M    V P   TF  +  A G   N+ L + +H 
Sbjct: 142 SLPWNWLIRGFSMLGCFDFALMFFFRMLGSNVAPDKYTFPYVIKACGGLNNVPLCKMVHE 201

Query: 357 VLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANE 416
           +        DL + + LI +Y   G I +A  +F  +  RD + WN M+ G+  +G  N 
Sbjct: 202 LARSMGFHMDLFIGSSLIKLYTDNGYIHDAKYLFDELPVRDCILWNVMLNGYVKNGDFNS 261

Query: 417 TLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMI 476
            L  F+ M  S   PNSV+F+ +LS C+  G+V  G +L + +      +  P    ++I
Sbjct: 262 ALGTFQEMRNSCVKPNSVSFVCLLSVCATRGIVRAGIQL-HGLVIRSGFESDPTVANTII 320

Query: 477 NLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGA 510
            +  + G + +A +    +P + D   W  L+  
Sbjct: 321 TMYSKCGNLFDARKIFDIMP-QTDTVTWNGLIAG 353



 Score = 47.8 bits (112), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 67/160 (41%), Gaps = 8/160 (5%)

Query: 352 RQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHH 411
           RQIH  ++       L L + ++ MY  C    +  N+F  +     + WN ++ GFS  
Sbjct: 96  RQIHAKVLVCGMNGSLTLGSRMLGMYVLCRSFKDVGNLFCRLQLCYSLPWNWLIRGFSML 155

Query: 412 GLANETLKVFESMLESGTHPNSVTFLGILSAC---SHAGLVSRGWELFNAMFDVYKIQPG 468
           G  +  L  F  ML S   P+  TF  ++ AC   ++  L     EL  +M     +  G
Sbjct: 156 GCFDFALMFFFRMLGSNVAPDKYTFPYVIKACGGLNNVPLCKMVHELARSMGFHMDLFIG 215

Query: 469 PEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALL 508
                S+I L    G I +A+     LP   D  +W  +L
Sbjct: 216 S----SLIKLYTDNGYIHDAKYLFDELPVR-DCILWNVML 250


>gi|147863814|emb|CAN79347.1| hypothetical protein VITISV_019894 [Vitis vinifera]
          Length = 667

 Score =  311 bits (797), Expect = 6e-82,   Method: Compositional matrix adjust.
 Identities = 185/595 (31%), Positives = 316/595 (53%), Gaps = 21/595 (3%)

Query: 17  SITKYSKRGFIDEAKALFQLMPQRNVVSY----NAMLSGFLQNGRLSEARRLFEEMPERN 72
           SI  YS  G + +A  L   + +  ++++    N +L  ++ +  LS+A +L   MP+ +
Sbjct: 22  SIELYS-HGHMYKAPVLHASLVKNGLIAHVYQCNILLQAYINSQALSDAHKLLHFMPQPS 80

Query: 73  VVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPI 132
           VVS+  ++ G    G V EA KLF+   +R+  SWN ++ G ++N +L E    F  M  
Sbjct: 81  VVSYNTILSGYFKFGLVSEAIKLFDGTSKRDCHSWNIVLSGCVKNHKLGEGLTHFMKMRC 140

Query: 133 KNVISWNAMIAGYVECCMMGEAIVLFEEM----EERNVVTWTSMISGYCRAGEVEEGYCL 188
            +V   N   A  + CC +G    +  ++     + +    T+++  Y   GE+ +   +
Sbjct: 141 SSVRPDNFTYAIIIPCCDLGFGQQVHADIVKVCSDLDAFIGTNLLRMYAEVGEIGDARKV 200

Query: 189 FRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRF 248
           F  MP + +V+W AMI  ++  G   +S+ LF ++      G + +  +   ++N +   
Sbjct: 201 FDGMPSRGLVTWNAMISCYSKYGRGDKSIGLFRQLX---REGISADEYTYAIVLNEFAAR 257

Query: 249 GRLEEAQNLFDTVPVR----DEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMI 304
            ++ EA  +   +  R    D  +  ++++ Y   G V++A  LF  +PD+D V+WT +I
Sbjct: 258 WQVFEAMQVHSLIIERGFCSDRFTNNALVNLYSKCGYVASASRLFEEIPDQDVVSWTVII 317

Query: 305 SGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTES- 363
            G +Q+    EA +LF +M+   + P + TF  L GA         GR  H +++K    
Sbjct: 318 VGFLQSGHMEEAMWLFYQMQLGDIEPNSFTFGGLLGACADANAFQKGRHFHGLVLKFGLL 377

Query: 364 ESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFES 423
            +D+++ + ++ MY+KCG + +A   F  M  RD+ SWN ++ G++ +G   + LK++  
Sbjct: 378 GADVVVGSAVVDMYSKCGEMGDALRAFQEMPERDIASWNGIICGYAQNGAGMKALKLYNE 437

Query: 424 ML---ESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLG 480
           M+    SG  PN VTF+G+L ACSH GL+  G+  F  M D + I+P  EHY  M++LLG
Sbjct: 438 MVLLGPSGIAPNEVTFVGVLCACSHNGLLKEGYSYFKEMVDKHLIKPTAEHYTCMVDLLG 497

Query: 481 RAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHV 540
           RAG ++EAE  +L LP +PD+ +WGALLGAC    G+ ++    A+ L   +P N+  +V
Sbjct: 498 RAGLLQEAEALILALPIKPDNVMWGALLGACKL-HGDVQMTRRTAEHLYTNEPRNSSNYV 556

Query: 541 VLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQV 595
           +L N Y   G   E  ++R  M  +GV K  GCSW+     +  FL+GD +  Q+
Sbjct: 557 LLANSYTDIGEWGEAVEIREVMEARGVEKTAGCSWVEIGTCMHSFLAGDXLHPQI 611



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 118/501 (23%), Positives = 204/501 (40%), Gaps = 116/501 (23%)

Query: 7   PKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFE 66
           P+  VV   + ++ Y K G + EA  LF    +R+  S+N +LSG ++N +L E    F 
Sbjct: 77  PQPSVVSYNTILSGYFKFGLVSEAIKLFDGTSKRDCHSWNIVLSGCVKNHKLGEGLTHFM 136

Query: 67  EM------PERNVVSWTAMICGL-----------------------------ADAGRVCE 91
           +M      P+    +     C L                             A+ G + +
Sbjct: 137 KMRCSSVRPDNFTYAIIIPCCDLGFGQQVHADIVKVCSDLDAFIGTNLLRMYAEVGEIGD 196

Query: 92  ARKLFEEMPERNVVSWNSMV------------VGLIRNGE--------------LNE--A 123
           ARK+F+ MP R +V+WN+M+            +GL R                 LNE  A
Sbjct: 197 ARKVFDGMPSRGLVTWNAMISCYSKYGRGDKSIGLFRQLXREGISADEYTYAIVLNEFAA 256

Query: 124 R-KVFNSMPIKNVI----------SWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSM 172
           R +VF +M + ++I          + NA++  Y +C  +  A  LFEE+ +++VV+WT +
Sbjct: 257 RWQVFEAMQVHSLIIERGFCSDRFTNNALVNLYSKCGYVASASRLFEEIPDQDVVSWTVI 316

Query: 173 ISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNN 232
           I G+ ++G +EE   LF +M   ++   +   GG                + G C + N 
Sbjct: 317 IVGFLQSGHMEEAMWLFYQMQLGDIEPNSFTFGG----------------LLGACADAN- 359

Query: 233 CNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNM 292
              Q         ++FG L             D +  ++++D Y   G++ +A   F  M
Sbjct: 360 -AFQKGRHFHGLVLKFGLLGA-----------DVVVGSAVVDMYSKCGEMGDALRAFQEM 407

Query: 293 PDRDAVAWTAMISGLVQNELFVEATYLFMEM---RAHGVPPLNATFSVLFGAAGATANID 349
           P+RD  +W  +I G  QN   ++A  L+ EM      G+ P   TF  +  A      + 
Sbjct: 408 PERDIASWNGIICGYAQNGAGMKALKLYNEMVLLGPSGIAPNEVTFVGVLCACSHNGLLK 467

Query: 350 LG-----RQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYN-IFSNMVSRDLVSWNS 403
            G       +   L+K  +E       C++ +  + G++  A   I +  +  D V W +
Sbjct: 468 EGYSYFKEMVDKHLIKPTAEH----YTCMVDLLGRAGLLQEAEALILALPIKPDNVMWGA 523

Query: 404 MVMGFSHHGLANETLKVFESM 424
           ++     HG    T +  E +
Sbjct: 524 LLGACKLHGDVQMTRRTAEHL 544



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 52/190 (27%), Positives = 93/190 (48%), Gaps = 22/190 (11%)

Query: 11  VVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEM-- 68
           VV  ++ +  YSK G + +A   FQ MP+R++ S+N ++ G+ QNG   +A +L+ EM  
Sbjct: 381 VVVGSAVVDMYSKCGEMGDALRAFQEMPERDIASWNGIICGYAQNGAGMKALKLYNEMVL 440

Query: 69  --PE---RNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVS-----WNSMVVGLIRNG 118
             P     N V++  ++C  +  G + E    F+EM +++++      +  MV  L R G
Sbjct: 441 LGPSGIAPNEVTFVGVLCACSHNGLLKEGYSYFKEMVDKHLIKPTAEHYTCMVDLLGRAG 500

Query: 119 ELNEARKVFNSMPIK-NVISWNAMIAGYVECCMMGEAIVLFEEMEE------RNVVTWTS 171
            L EA  +  ++PIK + + W A++     C + G+  +     E       RN   +  
Sbjct: 501 LLQEAEALILALPIKPDNVMWGALLGA---CKLHGDVQMTRRTAEHLYTNEPRNSSNYVL 557

Query: 172 MISGYCRAGE 181
           + + Y   GE
Sbjct: 558 LANSYTDIGE 567


>gi|225436683|ref|XP_002262885.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Vitis vinifera]
          Length = 866

 Score =  311 bits (797), Expect = 6e-82,   Method: Compositional matrix adjust.
 Identities = 198/643 (30%), Positives = 327/643 (50%), Gaps = 69/643 (10%)

Query: 15  TSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMP----E 70
           TS +  Y K   +++ + +F  M  +NVVS+ ++L+G+ QNG   +A +LF +M     +
Sbjct: 131 TSLVDMYMKTESVEDGERVFDEMRVKNVVSWTSLLAGYRQNGLNEQALKLFSQMQLEGIK 190

Query: 71  RNVVSWTAMICGLADAGRV-----------------------------------CEARKL 95
            N  ++ A++ GLA  G V                                    +A+ +
Sbjct: 191 PNPFTFAAVLGGLAADGAVEKGVQVHTMVIKSGLDSTIFVGNSMVNMYSKSLMVSDAKAV 250

Query: 96  FEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAI 155
           F+ M  RN VSWNSM+ G + NG   EA ++F  M ++ V     + A  ++ C   + +
Sbjct: 251 FDSMENRNAVSWNSMIAGFVTNGLDLEAFELFYRMRLEGVKLTQTIFATVIKLCANIKEM 310

Query: 156 VLFEEME--------ERNVVTWTSMISGYCRAGEVEEGYCLFRRMPR-KNVVSWTAMIGG 206
              +++         + ++   T+++  Y +  E+++ + LF  M   +NVVSWTA+I G
Sbjct: 311 SFAKQLHCQVIKNGSDFDLNIKTALMVAYSKCSEIDDAFKLFCMMHGVQNVVSWTAIISG 370

Query: 207 FAWNGFHKESLLLFIEMK--GICDNGNN------CNVQSCNSMINGYIRFGRLEEAQNLF 258
           +  NG    ++ LF +M+  G+  N          N     S I+  +     E + ++ 
Sbjct: 371 YVQNGRTDRAMNLFCQMRREGVRPNHFTYSTILTANAAVSPSQIHALVVKTNYENSPSV- 429

Query: 259 DTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATY 318
                      T++ D Y  +G  + A  +F  + ++D VAW+AM+SG  Q      A  
Sbjct: 430 ----------GTALSDSYSKIGDANEAAKIFELIDEKDIVAWSAMLSGYAQMGDIEGAVK 479

Query: 319 LFMEMRAHGVPPLNATFS-VLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMY 377
           +F+++   GV P   TFS VL   A  TA+++ G+Q H   +K+   + L + + L++MY
Sbjct: 480 IFLQLAKEGVEPNEFTFSSVLNACAAPTASVEQGKQFHSCSIKSGFSNALCVSSALVTMY 539

Query: 378 AKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFL 437
           AK G I++A  +F   V RDLVSWNSM+ G++ HG   ++LK+FE M       + +TF+
Sbjct: 540 AKRGNIESANEVFKRQVDRDLVSWNSMISGYAQHGCGKKSLKIFEEMRSKNLELDGITFI 599

Query: 438 GILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPF 497
           G++SAC+HAGLV+ G   F+ M   Y I P  EHY  M++L  RAG +++A + + ++PF
Sbjct: 600 GVISACTHAGLVNEGQRYFDLMVKDYHIVPTMEHYSCMVDLYSRAGMLEKAMDLINKMPF 659

Query: 498 EPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHK 557
                IW  LL AC     N ++ E AA++L+ L P ++ A+V+L NIYA +G   E  K
Sbjct: 660 PAGATIWRTLLAACR-VHLNVQLGELAAEKLISLQPQDSAAYVLLSNIYATAGNWQERAK 718

Query: 558 LRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEILL 600
           +R  M +K V+K  G SW+        F++GD    Q   I L
Sbjct: 719 VRKLMDMKKVKKEAGYSWIEVKNKTFSFMAGDLSHPQSDRIYL 761



 Score =  155 bits (393), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 127/495 (25%), Positives = 230/495 (46%), Gaps = 54/495 (10%)

Query: 92  ARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMM 151
           +++LF+E P++ +   N ++    RN +  EA  +F  +      +  + ++     C++
Sbjct: 45  SQQLFDETPQQGLSRNNHLLFEFSRNDQNKEALNLFLGLRRSGSPTDGSSLS-----CVL 99

Query: 152 GEAIVLFEEMEER-------------NVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVV 198
                LF+ +  +             +V   TS++  Y +   VE+G  +F  M  KNVV
Sbjct: 100 KVCGCLFDRIVGKQVHCQCIKCGFVEDVSVGTSLVDMYMKTESVEDGERVFDEMRVKNVV 159

Query: 199 SWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLF 258
           SWT+++ G+  NG ++++L LF +M+     G   N  +  +++ G    G +E+   + 
Sbjct: 160 SWTSLLAGYRQNGLNEQALKLFSQMQL---EGIKPNPFTFAAVLGGLAADGAVEKGVQVH 216

Query: 259 DTVPVRDEISWT-----SMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELF 313
            T+ ++  +  T     SM++ Y     VS+A  +F +M +R+AV+W +MI+G V N L 
Sbjct: 217 -TMVIKSGLDSTIFVGNSMVNMYSKSLMVSDAKAVFDSMENRNAVSWNSMIAGFVTNGLD 275

Query: 314 VEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCL 373
           +EA  LF  MR  GV      F+ +         +   +Q+HC ++K  S+ DL ++  L
Sbjct: 276 LEAFELFYRMRLEGVKLTQTIFATVIKLCANIKEMSFAKQLHCQVIKNGSDFDLNIKTAL 335

Query: 374 ISMYAKCGVIDNAYNIFSNMVS-RDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPN 432
           +  Y+KC  ID+A+ +F  M   +++VSW +++ G+  +G  +  + +F  M   G  PN
Sbjct: 336 MVAYSKCSEIDDAFKLFCMMHGVQNVVSWTAIISGYVQNGRTDRAMNLFCQMRREGVRPN 395

Query: 433 SVTFLGILSACS-------HAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKI 485
             T+  IL+A +       HA +V   +E              P    ++ +   + G  
Sbjct: 396 HFTYSTILTANAAVSPSQIHALVVKTNYE------------NSPSVGTALSDSYSKIGDA 443

Query: 486 KEAEEFVLRLPFEPDHRIWGALLGA---CGFCEGNAEIAEHAAKRLLELDPLNAPAHVVL 542
            EA + +  L  E D   W A+L      G  EG  +I    AK  +E +     + +  
Sbjct: 444 NEAAK-IFELIDEKDIVAWSAMLSGYAQMGDIEGAVKIFLQLAKEGVEPNEFTFSSVLNA 502

Query: 543 CNIYAASGRHVEEHK 557
           C   AA    VE+ K
Sbjct: 503 C---AAPTASVEQGK 514


>gi|15231798|ref|NP_190904.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174119|sp|Q9LFI1.1|PP280_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g53360, mitochondrial; Flags: Precursor
 gi|6729487|emb|CAB67643.1| putative protein [Arabidopsis thaliana]
 gi|332645554|gb|AEE79075.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 768

 Score =  311 bits (797), Expect = 7e-82,   Method: Compositional matrix adjust.
 Identities = 181/625 (28%), Positives = 325/625 (52%), Gaps = 57/625 (9%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVV--- 74
           ++ Y K G + +A+ +F  MP+RN+VSY ++++G+ QNG+ +EA RL+ +M + ++V   
Sbjct: 109 LSMYGKCGSLRDAREVFDFMPERNLVSYTSVITGYSQNGQGAEAIRLYLKMLQEDLVPDQ 168

Query: 75  -SWTAMICGLADAGRVCEARKLFEEM----PERNVVSWNSMVVGLIRNGELNEARKVFNS 129
            ++ ++I   A +  V   ++L  ++       ++++ N+++   +R  ++++A +VF  
Sbjct: 169 FAFGSIIKACASSSDVGLGKQLHAQVIKLESSSHLIAQNALIAMYVRFNQMSDASRVFYG 228

Query: 130 MPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEE-------------------------- 163
           +P+K++ISW+++IAG+ +     EA+   +EM                            
Sbjct: 229 IPMKDLISWSSIIAGFSQLGFEFEALSHLKEMLSFGVFHPNEYIFGSSLKACSSLLRPDY 288

Query: 164 --------------RNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAW 209
                          N +   S+   Y R G +     +F ++ R +  SW  +I G A 
Sbjct: 289 GSQIHGLCIKSELAGNAIAGCSLCDMYARCGFLNSARRVFDQIERPDTASWNVIIAGLAN 348

Query: 210 NGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVP----VRD 265
           NG+  E++ +F +M+    +G   +  S  S++    +   L +   +   +     + D
Sbjct: 349 NGYADEAVSVFSQMRS---SGFIPDAISLRSLLCAQTKPMALSQGMQIHSYIIKWGFLAD 405

Query: 266 EISWTSMIDGYLSVGQVSNAYYLFHNMPDR-DAVAWTAMISGLVQNELFVEATYLFMEMR 324
                S++  Y     +   + LF +  +  D+V+W  +++  +Q+E  VE   LF  M 
Sbjct: 406 LTVCNSLLTMYTFCSDLYCCFNLFEDFRNNADSVSWNTILTACLQHEQPVEMLRLFKLML 465

Query: 325 AHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVID 384
                P + T   L       +++ LG Q+HC  +KT    +  ++N LI MYAKCG + 
Sbjct: 466 VSECEPDHITMGNLLRGCVEISSLKLGSQVHCYSLKTGLAPEQFIKNGLIDMYAKCGSLG 525

Query: 385 NAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACS 444
            A  IF +M +RD+VSW+++++G++  G   E L +F+ M  +G  PN VTF+G+L+ACS
Sbjct: 526 QARRIFDSMDNRDVVSWSTLIVGYAQSGFGEEALILFKEMKSAGIEPNHVTFVGVLTACS 585

Query: 445 HAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIW 504
           H GLV  G +L+  M   + I P  EH   +++LL RAG++ EAE F+  +  EPD  +W
Sbjct: 586 HVGLVEEGLKLYATMQTEHGISPTKEHCSCVVDLLARAGRLNEAERFIDEMKLEPDVVVW 645

Query: 505 GALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGL 564
             LL AC   +GN  +A+ AA+ +L++DP N+ AHV+LC+++A+SG       LR  M  
Sbjct: 646 KTLLSACK-TQGNVHLAQKAAENILKIDPFNSTAHVLLCSMHASSGNWENAALLRSSMKK 704

Query: 565 KGVRKVPGCSWLMRNGGIQMFLSGD 589
             V+K+PG SW+     I +F + D
Sbjct: 705 HDVKKIPGQSWIEIEDKIHIFFAED 729



 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 91/362 (25%), Positives = 177/362 (48%), Gaps = 49/362 (13%)

Query: 106 SWNSMVVGLIRNGELNEARKV----FNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEM 161
           ++ S++     +  L + RK+     NS    + I  N +++ Y +C  + +A  +F+ M
Sbjct: 69  TYISLICACSSSRSLAQGRKIHDHILNSNCKYDTILNNHILSMYGKCGSLRDAREVFDFM 128

Query: 162 EERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVV----SWTAMIGGFAWN---GFHK 214
            ERN+V++TS+I+GY + G+  E   L+ +M ++++V    ++ ++I   A +   G  K
Sbjct: 129 PERNLVSYTSVITGYSQNGQGAEAIRLYLKMLQEDLVPDQFAFGSIIKACASSSDVGLGK 188

Query: 215 ESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMID 274
           +     I+++      ++ ++ + N++I  Y+RF ++ +A  +F  +P++D ISW+S+I 
Sbjct: 189 QLHAQVIKLE------SSSHLIAQNALIAMYVRFNQMSDASRVFYGIPMKDLISWSSIIA 242

Query: 275 GYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGV-PPLNA 333
           G+  +G                                  EA     EM + GV  P   
Sbjct: 243 GFSQLG-------------------------------FEFEALSHLKEMLSFGVFHPNEY 271

Query: 334 TFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNM 393
            F     A  +    D G QIH + +K+E   + I    L  MYA+CG +++A  +F  +
Sbjct: 272 IFGSSLKACSSLLRPDYGSQIHGLCIKSELAGNAIAGCSLCDMYARCGFLNSARRVFDQI 331

Query: 394 VSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGW 453
              D  SWN ++ G +++G A+E + VF  M  SG  P++++   +L A +    +S+G 
Sbjct: 332 ERPDTASWNVIIAGLANNGYADEAVSVFSQMRSSGFIPDAISLRSLLCAQTKPMALSQGM 391

Query: 454 EL 455
           ++
Sbjct: 392 QI 393


>gi|2245038|emb|CAB10457.1| hypothetical protein [Arabidopsis thaliana]
 gi|7268435|emb|CAB80955.1| hypothetical protein [Arabidopsis thaliana]
          Length = 851

 Score =  311 bits (797), Expect = 7e-82,   Method: Compositional matrix adjust.
 Identities = 179/506 (35%), Positives = 277/506 (54%), Gaps = 43/506 (8%)

Query: 101 ERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYV-ECCMMGEAIVLFE 159
           +  +   N ++   +R+G+++ A +VF+ M  KN I+WN+++ G   +   M EA  LF+
Sbjct: 58  QDQIFPLNKIIARCVRSGDIDGALRVFHGMRAKNTITWNSLLIGISKDPSRMMEAHQLFD 117

Query: 160 EMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLL 219
           E+ E +  ++  M+S Y R    E+    F RMP K+  SW  MI G+A  G  +++  L
Sbjct: 118 EIPEPDTFSYNIMLSCYVRNVNFEKAQSFFDRMPFKDAASWNTMITGYARRGEMEKAREL 177

Query: 220 FIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSV 279
           F  M          N  S N+MI+GYI  G LE+A + F   PVR  ++WT+MI GY+  
Sbjct: 178 FYSMM-------EKNEVSWNAMISGYIECGDLEKASHFFKVAPVRGVVAWTAMITGYMKA 230

Query: 280 GQVSNAYYLFHNMP-DRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFS-V 337
            +V  A  +F +M  +++ V W AMISG V+N    +   LF  M   G+ P ++  S  
Sbjct: 231 KKVELAEAMFKDMTVNKNLVTWNAMISGYVENSRPEDGLKLFRAMLEEGIRPNSSGLSSA 290

Query: 338 LFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRD 397
           L G               C L              LISMY KCG + +A+ +F  M  +D
Sbjct: 291 LLG---------------CTL------------TSLISMYCKCGELGDAWKLFEVMKKKD 323

Query: 398 LVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFN 457
           +V+WN+M+ G++ HG A++ L +F  M+++   P+ +TF+ +L AC+HAGLV+ G   F 
Sbjct: 324 VVAWNAMISGYAQHGNADKALCLFREMIDNKIRPDWITFVAVLLACNHAGLVNIGMAYFE 383

Query: 458 AMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGN 517
           +M   YK++P P+HY  M++LLGRAGK++EA + +  +PF P   ++G LLGAC     N
Sbjct: 384 SMVRDYKVEPQPDHYTCMVDLLGRAGKLEEALKLIRSMPFRPHAAVFGTLLGACR-VHKN 442

Query: 518 AEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGV-----RKVPG 572
            E+AE AA++LL+L+  NA  +V L NIYA+  R  +  ++R  M    V      KVPG
Sbjct: 443 VELAEFAAEKLLQLNSQNAAGYVQLANIYASKNRWEDVARVRKRMKESNVVKVERVKVPG 502

Query: 573 CSWLMRNGGIQMFLSGDKIPAQVAEI 598
            SW+     +  F S D+I  ++  I
Sbjct: 503 YSWIEIRNKVHHFRSSDRIHPELDSI 528



 Score =  179 bits (454), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 114/375 (30%), Positives = 191/375 (50%), Gaps = 25/375 (6%)

Query: 39  QRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLA-DAGRVCEARKLFE 97
           Q  +   N +++  +++G +  A R+F  M  +N ++W +++ G++ D  R+ EA +LF+
Sbjct: 58  QDQIFPLNKIIARCVRSGDIDGALRVFHGMRAKNTITWNSLLIGISKDPSRMMEAHQLFD 117

Query: 98  EMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVL 157
           E+PE +  S+N M+   +RN    +A+  F+ MP K+  SWN MI GY     M +A  L
Sbjct: 118 EIPEPDTFSYNIMLSCYVRNVNFEKAQSFFDRMPFKDAASWNTMITGYARRGEMEKAREL 177

Query: 158 FEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESL 217
           F  M E+N V+W +MISGY   G++E+    F+  P + VV+WTAMI G+      + + 
Sbjct: 178 FYSMMEKNEVSWNAMISGYIECGDLEKASHFFKVAPVRGVVAWTAMITGYMKAKKVELAE 237

Query: 218 LLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTV------PVRDEIS--- 268
            +F +M        N N+ + N+MI+GY+   R E+   LF  +      P    +S   
Sbjct: 238 AMFKDMTV------NKNLVTWNAMISGYVENSRPEDGLKLFRAMLEEGIRPNSSGLSSAL 291

Query: 269 ----WTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMR 324
                TS+I  Y   G++ +A+ LF  M  +D VAW AMISG  Q+    +A  LF EM 
Sbjct: 292 LGCTLTSLISMYCKCGELGDAWKLFEVMKKKDVVAWNAMISGYAQHGNADKALCLFREMI 351

Query: 325 AHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLM---KTESESDLILENCLISMYAKCG 381
            + + P   TF  +  A      +++G      ++   K E + D     C++ +  + G
Sbjct: 352 DNKIRPDWITFVAVLLACNHAGLVNIGMAYFESMVRDYKVEPQPDHY--TCMVDLLGRAG 409

Query: 382 VIDNAYNIFSNMVSR 396
            ++ A  +  +M  R
Sbjct: 410 KLEEALKLIRSMPFR 424



 Score =  151 bits (382), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 100/323 (30%), Positives = 152/323 (47%), Gaps = 57/323 (17%)

Query: 29  EAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGR 88
           EA  LF  +P+ +  SYN MLS +++N    +A+  F+ MP ++  SW  MI G A  G 
Sbjct: 111 EAHQLFDEIPEPDTFSYNIMLSCYVRNVNFEKAQSFFDRMPFKDAASWNTMITGYARRGE 170

Query: 89  VCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVEC 148
           + +AR+LF  M E+N VSWN+M+ G I  G+L +A   F   P++ V++W AMI GY++ 
Sbjct: 171 MEKARELFYSMMEKNEVSWNAMISGYIECGDLEKASHFFKVAPVRGVVAWTAMITGYMKA 230

Query: 149 CMMGEAIVLFEEME-ERNVVTWTSMISG-------------------------------- 175
             +  A  +F++M   +N+VTW +MISG                                
Sbjct: 231 KKVELAEAMFKDMTVNKNLVTWNAMISGYVENSRPEDGLKLFRAMLEEGIRPNSSGLSSA 290

Query: 176 ------------YCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEM 223
                       YC+ GE+ + + LF  M +K+VV+W AMI G+A +G   ++L LF EM
Sbjct: 291 LLGCTLTSLISMYCKCGELGDAWKLFEVMKKKDVVAWNAMISGYAQHGNADKALCLFREM 350

Query: 224 KGICDNGNNCN-------VQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGY 276
               DN    +       + +CN      I     E     +   P  D   +T M+D  
Sbjct: 351 ---IDNKIRPDWITFVAVLLACNHAGLVNIGMAYFESMVRDYKVEPQPDH--YTCMVDLL 405

Query: 277 LSVGQVSNAYYLFHNMPDRDAVA 299
              G++  A  L  +MP R   A
Sbjct: 406 GRAGKLEEALKLIRSMPFRPHAA 428



 Score = 43.9 bits (102), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 40/171 (23%), Positives = 80/171 (46%), Gaps = 14/171 (8%)

Query: 358 LMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHH-GLANE 416
           L K   +  +   N +I+   + G ID A  +F  M +++ ++WNS+++G S       E
Sbjct: 52  LTKPSDQDQIFPLNKIIARCVRSGDIDGALRVFHGMRAKNTITWNSLLIGISKDPSRMME 111

Query: 417 TLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMI 476
             ++F+ + E    P++ ++  I+ +C    +    +E   + FD    +     + +MI
Sbjct: 112 AHQLFDEIPE----PDTFSY-NIMLSCYVRNV---NFEKAQSFFDRMPFKDAAS-WNTMI 162

Query: 477 NLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCE-GNAEIAEHAAK 526
               R G++++A E    +  E +   W A++   G+ E G+ E A H  K
Sbjct: 163 TGYARRGEMEKARELFYSM-MEKNEVSWNAMIS--GYIECGDLEKASHFFK 210


>gi|255581219|ref|XP_002531422.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223528972|gb|EEF30964.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 619

 Score =  311 bits (797), Expect = 7e-82,   Method: Compositional matrix adjust.
 Identities = 182/468 (38%), Positives = 261/468 (55%), Gaps = 34/468 (7%)

Query: 7   PKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNG-RLSEARRLF 65
           P   V+  TS +T Y+K G I +AK LF  MP+R   +YNAM++ +++N   + EA  LF
Sbjct: 22  PHKNVITHTSMLTAYAKNGQIAKAKKLFDEMPERTTATYNAMITAYIRNSCMVDEAFSLF 81

Query: 66  EEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPE--RNVVSWNSMVVGLIRNGELNEA 123
             M ERN VS+ AMI G   AG   +A  L+ E+P   R  V  N+M+ G ++ G L EA
Sbjct: 82  SRMSERNAVSYGAMITGFLKAGMFEKAENLYREIPAKWREPVCSNAMISGYLKVGRLEEA 141

Query: 124 RKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVE 183
            KVF     K+V+SW++M+ GY +   + EA  LF  M  RNVVTWTSMI GY   G  E
Sbjct: 142 IKVFEGTVEKDVVSWSSMVDGYCKKGRIFEARELFNMMPVRNVVTWTSMIDGYMNVGFFE 201

Query: 184 EGYCLF---RRMPRKNVVSWTAMIG---------------------GFAWNGFHKESLLL 219
            G+ LF   RR+   N ++ T M                       GF ++ F   S++ 
Sbjct: 202 NGFSLFLSMRRVIEVNPLTLTIMFEACRHFGRYREAMQVHGLVLRIGFEFDIFLGNSIIA 261

Query: 220 FI-------EMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSM 272
                    E K +    NN +V S NS+I+GYI+   +EEA  LF+ +P +D +SWT+M
Sbjct: 262 MYCEFGCMDEAKRMFQMMNNKDVVSWNSLISGYIQHDEIEEAYKLFEKIPGKDVVSWTTM 321

Query: 273 IDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLN 332
           I G+ + G V     LF  MP++D VAWTA+ISG V N  + EA   F+EM    V P +
Sbjct: 322 ITGFSAKGNVQKGIQLFKIMPEKDDVAWTAVISGFVSNGEYEEAFLWFIEMLKKAVKPNS 381

Query: 333 ATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSN 392
            TFS +  A+ + A ++ G QIH  + K + + DL + N L+SMY+KCG I  AY +F++
Sbjct: 382 LTFSSMLTASASLATLNQGLQIHAHVEKMDVQFDLSIRNSLVSMYSKCGNIAEAYQVFTS 441

Query: 393 MVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGIL 440
           + + +++S+NSM+ GFS +G   E L +F  M +    PN +TFL  L
Sbjct: 442 INAPNIISFNSMITGFSQNGHGEEALDLFSKMRKENQEPNEITFLDYL 489



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 56/195 (28%), Positives = 104/195 (53%), Gaps = 21/195 (10%)

Query: 7   PKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFE 66
           P   VV  T+ IT +S +G + +   LF++MP+++ V++ A++SGF+ NG   EA   F 
Sbjct: 311 PGKDVVSWTTMITGFSAKGNVQKGIQLFKIMPEKDDVAWTAVISGFVSNGEYEEAFLWFI 370

Query: 67  EMPER----NVVSWTAMICGLADAGRVCEARKLFEEMPERNV----VSWNSMVVGLIRNG 118
           EM ++    N +++++M+   A    + +  ++   + + +V       NS+V    + G
Sbjct: 371 EMLKKAVKPNSLTFSSMLTASASLATLNQGLQIHAHVEKMDVQFDLSIRNSLVSMYSKCG 430

Query: 119 ELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEM----EERNVVTWTSMIS 174
            + EA +VF S+   N+IS+N+MI G+ +     EA+ LF +M    +E N +T+   + 
Sbjct: 431 NIAEAYQVFTSINAPNIISFNSMITGFSQNGHGEEALDLFSKMRKENQEPNEITFLDYL- 489

Query: 175 GYCRAGEVEEGYCLF 189
                   E+ +CLF
Sbjct: 490 --------EKRFCLF 496


>gi|302795382|ref|XP_002979454.1| hypothetical protein SELMODRAFT_111075 [Selaginella moellendorffii]
 gi|300152702|gb|EFJ19343.1| hypothetical protein SELMODRAFT_111075 [Selaginella moellendorffii]
          Length = 689

 Score =  311 bits (796), Expect = 7e-82,   Method: Compositional matrix adjust.
 Identities = 187/629 (29%), Positives = 306/629 (48%), Gaps = 77/629 (12%)

Query: 7   PKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFE 66
           P+     + + I  Y + G + +A+ +F  +   +VVS+ +ML     +G L +A+ LF 
Sbjct: 33  PEKDTASMNAMINLYGRTGDVSQARTVFDAIKNPDVVSWTSMLQANALSGHLQDAKNLFR 92

Query: 67  EMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKV 126
            MP+RN   W  M+ G A  G V  A  + + MP+ NVVSW  M+      G L  A  V
Sbjct: 93  AMPQRNDYCWNTMLNGFASHGDVTTACLILQLMPQHNVVSWTIMLTAYAERGHLALALSV 152

Query: 127 FNSMP--IKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEE 184
           F+S+P   ++V++WN +         + EA+++ E+M   ++V   SMI+ + +AG    
Sbjct: 153 FDSVPARTRDVVTWNVLAQALAGNFHVDEAMLVLEKMPHHSLVAVNSMITAHAQAGHAHV 212

Query: 185 GYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEM--------------------- 223
              LF+ MP +NVVSW+A IG +A  G+  ESL L   M                     
Sbjct: 213 ARHLFKNMPARNVVSWSATIGAYAQAGYIPESLELVRAMLLEGVKPNEVTLVAILTGCTP 272

Query: 224 ----------KGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISW---- 269
                     + I  +G+  +    N +I  Y + G ++EA+ +FD +  ++  SW    
Sbjct: 273 EHLAIGRAVHQQIARSGDARDRFVQNLLIQMYGKCGAVQEARKIFDAIADKNVFSWNIMI 332

Query: 270 ------------------------------------TSMIDGYLSVGQVSNAYYLFHNMP 293
                                               T++I+ + + G + +A   FH + 
Sbjct: 333 GAYVNNGLDDHALDLYKRMAPALPSALGLETNPVVATALINAFSAAGSLLSAEEAFHCVD 392

Query: 294 DRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNA---TFSVLFGAAGATANIDL 350
            +DAV WT+MI+   +N   + A   F  M   G+ P      T+  L  A G+  +++ 
Sbjct: 393 CKDAVCWTSMITAFARNGDGIGALKTFSRMNLEGIFPDEICILTYVTLLAACGSVGDVEE 452

Query: 351 GRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSH 410
           GR+ H  +  +  E+  ++ N L+SMY+K G  D A  +F  +  ++  ++NSM+   + 
Sbjct: 453 GRRAHAKITASGFEAVPVVANSLLSMYSKFGRCDEAKVVFEKIQRKETGAFNSMISALTE 512

Query: 411 HGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPE 470
           HG   E L +F  M   G  PN VTF+ +  AC+HAGLV + WELF  M +   I+P  +
Sbjct: 513 HGKFEEALGLFPLMDIDGVRPNDVTFINVFLACTHAGLVDKAWELFLCMVEECGIEPSEK 572

Query: 471 HYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLE 530
           H   +++LLGRAGK++EAE+F+  +   P   IW  LLGAC    G+ +    AA++ +E
Sbjct: 573 HCGCVVDLLGRAGKLEEAEKFIANMEARPGAVIWMTLLGACKL-HGDIDRGRFAAEKAIE 631

Query: 531 LDPLNAPAHVVLCNIYAASGRHVEEHKLR 559
           +DP ++  +V L +I+ A+G   E  KLR
Sbjct: 632 IDPADSGPYVALASIFMAAGMKDEADKLR 660



 Score =  187 bits (476), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 127/457 (27%), Positives = 215/457 (47%), Gaps = 24/457 (5%)

Query: 68  MPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVF 127
           MP+   V+ T +I  LA+ G   EA  L+  +PE++  S N+M+    R G++++AR VF
Sbjct: 1   MPQVGSVAATVVILALAEEGHFAEAENLYCFIPEKDTASMNAMINLYGRTGDVSQARTVF 60

Query: 128 NSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYC 187
           +++   +V+SW +M+        + +A  LF  M +RN   W +M++G+   G+V     
Sbjct: 61  DAIKNPDVVSWTSMLQANALSGHLQDAKNLFRAMPQRNDYCWNTMLNGFASHGDVTTACL 120

Query: 188 LFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIR 247
           + + MP+ NVVSWT M+  +A  G    +L +F  +          +V + N +      
Sbjct: 121 ILQLMPQHNVVSWTIMLTAYAERGHLALALSVFDSVP-----ARTRDVVTWNVLAQALAG 175

Query: 248 FGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGL 307
              ++EA  + + +P    ++  SMI  +   G    A +LF NMP R+ V+W+A I   
Sbjct: 176 NFHVDEAMLVLEKMPHHSLVAVNSMITAHAQAGHAHVARHLFKNMPARNVVSWSATIGAY 235

Query: 308 VQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATA-NIDLGRQIHCVLMKTESESD 366
            Q     E+  L   M   GV P   T   +    G T  ++ +GR +H  + ++    D
Sbjct: 236 AQAGYIPESLELVRAMLLEGVKPNEVTLVAIL--TGCTPEHLAIGRAVHQQIARSGDARD 293

Query: 367 LILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLE 426
             ++N LI MY KCG +  A  IF  +  +++ SWN M+  + ++GL +  L +++ M  
Sbjct: 294 RFVQNLLIQMYGKCGAVQEARKIFDAIADKNVFSWNIMIGAYVNNGLDDHALDLYKRMAP 353

Query: 427 S-----GTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGR 481
           +     G   N V    +++A S AG +    E F+ +     +      + SMI    R
Sbjct: 354 ALPSALGLETNPVVATALINAFSAAGSLLSAEEAFHCVDCKDAVC-----WTSMITAFAR 408

Query: 482 AGKIKEAEEFVLRLPFE---PDH---RIWGALLGACG 512
            G    A +   R+  E   PD      +  LL ACG
Sbjct: 409 NGDGIGALKTFSRMNLEGIFPDEICILTYVTLLAACG 445



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 122/511 (23%), Positives = 210/511 (41%), Gaps = 84/511 (16%)

Query: 4   RNHPKSLVVHLTSSITKYSKRGFIDEAKALFQLM----PQRNVVSYNAMLSGFLQNGRLS 59
           +N P   VV  +++I  Y++ G+I E+  L + M     + N V+  A+L+G      L+
Sbjct: 218 KNMPARNVVSWSATIGAYAQAGYIPESLELVRAMLLEGVKPNEVTLVAILTGCTPE-HLA 276

Query: 60  EARRLFEEMPE----RNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLI 115
             R + +++      R+      +I      G V EARK+F+ + ++NV SWN M+   +
Sbjct: 277 IGRAVHQQIARSGDARDRFVQNLLIQMYGKCGAVQEARKIFDAIADKNVFSWNIMIGAYV 336

Query: 116 RNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISG 175
            NG  + A  ++  M                    +  A+ L     E N V  T++I+ 
Sbjct: 337 NNGLDDHALDLYKRMAPA-----------------LPSALGL-----ETNPVVATALINA 374

Query: 176 YCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEM-------KGICD 228
           +  AG +      F  +  K+ V WT+MI  FA NG    +L  F  M         IC 
Sbjct: 375 FSAAGSLLSAEEAFHCVDCKDAVCWTSMITAFARNGDGIGALKTFSRMNLEGIFPDEICI 434

Query: 229 NGNNCNVQSCNSMINGYIRFGRLEEAQ---NLFDTVPVRDEISWTSMIDGYLSVGQVSNA 285
                 + +C S+  G +  GR   A+   + F+ VPV       S++  Y   G+   A
Sbjct: 435 LTYVTLLAACGSV--GDVEEGRRAHAKITASGFEAVPV----VANSLLSMYSKFGRCDEA 488

Query: 286 YYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGAT 345
             +F  +  ++  A+ +MIS L ++  F EA  LF  M   GV P + TF  +F A    
Sbjct: 489 KVVFEKIQRKETGAFNSMISALTEHGKFEEALGLFPLMDIDGVRPNDVTFINVFLACTHA 548

Query: 346 ANIDLGRQIH-CVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSM 404
             +D   ++  C++ +   E       C++ +  + G ++ A    +NM +R        
Sbjct: 549 GLVDKAWELFLCMVEECGIEPSEKHCGCVVDLLGRAGKLEEAEKFIANMEAR-------- 600

Query: 405 VMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYK 464
                                     P +V ++ +L AC   G + RG        ++  
Sbjct: 601 --------------------------PGAVIWMTLLGACKLHGDIDRGRFAAEKAIEIDP 634

Query: 465 IQPGPEHYVSMINLLGRAGKIKEAEEFVLRL 495
              GP  YV++ ++   AG   EA++   RL
Sbjct: 635 ADSGP--YVALASIFMAAGMKDEADKLRKRL 663


>gi|255568474|ref|XP_002525211.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223535508|gb|EEF37177.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 654

 Score =  311 bits (796), Expect = 8e-82,   Method: Compositional matrix adjust.
 Identities = 181/587 (30%), Positives = 302/587 (51%), Gaps = 33/587 (5%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWT 77
           +  YSK   +  A+ +F  +P +N  SYNAML  +  + R  +A  LF  +   N+V+  
Sbjct: 66  VALYSKTNHLAFARYVFDQIPHKNTFSYNAMLISYSLHNRHGDALDLFSSLASSNLVNNI 125

Query: 78  AMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVIS 137
           ++ C L                  +++ S+    V L +       R  F++    +V  
Sbjct: 126 SITCLL------------------KSLSSFTLSDVKLGKEVHGFVLRTGFDA----DVFV 163

Query: 138 WNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMP---- 193
            NA+I  Y +C  +  +  +F+ M +R+VV+W SMISGY + G  E+   L+R M     
Sbjct: 164 ENALITYYSKCYDLDLSRKVFDRMTKRDVVSWNSMISGYSQGGLYEDCKTLYREMVDFSG 223

Query: 194 -RKNVVSWTAMIGGFAWNGFHKESLLLFIEM-KGICDNGNNCNVQSCNSMINGYIRFGRL 251
            R N V+  +++          + L   +E+ K I DN    ++  CN++I  Y + G L
Sbjct: 224 FRPNGVTVVSVLQACG----QTQDLAFGMEVHKFIVDNQVEIDISVCNALIGLYAKCGSL 279

Query: 252 EEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNE 311
           + A+ LFD +  +DE+++ ++I G +  G V  +  LF  M  +    W A+I+GLVQN 
Sbjct: 280 DYARELFDEMSEKDEVTYGAIISGLMLHGYVDQSLELFRGMKTQILSTWNAVITGLVQNN 339

Query: 312 LFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILEN 371
                  L  EM+A G  P   T S +       +++  G++IH   +K     ++ +  
Sbjct: 340 RHEGVLDLVREMQALGFRPNAVTLSSVLSTIAYFSSLKGGKEIHSYAIKIGYHRNIYVAT 399

Query: 372 CLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHP 431
            +I MYAK G +  A  +F     R LV W +++  ++ HG AN  L +F  ML+ G  P
Sbjct: 400 AIIDMYAKSGYLRGAQRVFDQSKDRSLVIWTAIISAYAVHGDANLALGLFHEMLKQGIQP 459

Query: 432 NSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEF 491
           + VTF  +L+AC+H G+V + WE+F +MF  Y IQP  EHY  ++  LG+A ++ EA+EF
Sbjct: 460 DPVTFTAVLAACAHCGMVDKAWEIFESMFKKYGIQPLVEHYACVVGALGKARRLSEAKEF 519

Query: 492 VLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGR 551
           V ++P EP  ++WGALL        + E+ +     L E++P N   +V++ N+Y+ +GR
Sbjct: 520 VSKMPIEPSAKVWGALLHGASI-SSDVELGKSVCDYLFEIEPENTGNYVIMANLYSQAGR 578

Query: 552 HVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
             E  ++R  M   G++K+PG SW+  + G++ F++ D     V EI
Sbjct: 579 WKEADEVRERMNKVGLQKIPGSSWIETSEGLRSFIATDTCTENVEEI 625



 Score = 60.1 bits (144), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 54/194 (27%), Positives = 102/194 (52%), Gaps = 15/194 (7%)

Query: 15  TSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNV- 73
           T+ I  Y+K G++  A+ +F     R++V + A++S +  +G  + A  LF EM ++ + 
Sbjct: 399 TAIIDMYAKSGYLRGAQRVFDQSKDRSLVIWTAIISAYAVHGDANLALGLFHEMLKQGIQ 458

Query: 74  ---VSWTAMICGLADAGRVCEARKLFEEMPERN----VVSWNSMVVG-LIRNGELNEARK 125
              V++TA++   A  G V +A ++FE M ++     +V   + VVG L +   L+EA++
Sbjct: 459 PDPVTFTAVLAACAHCGMVDKAWEIFESMFKKYGIQPLVEHYACVVGALGKARRLSEAKE 518

Query: 126 VFNSMPIK-NVISWNAMIAG--YVECCMMGEAI--VLFEEMEERNVVTWTSMISGYCRAG 180
             + MPI+ +   W A++ G        +G+++   LF E+E  N   +  M + Y +AG
Sbjct: 519 FVSKMPIEPSAKVWGALLHGASISSDVELGKSVCDYLF-EIEPENTGNYVIMANLYSQAG 577

Query: 181 EVEEGYCLFRRMPR 194
             +E   +  RM +
Sbjct: 578 RWKEADEVRERMNK 591


>gi|449531466|ref|XP_004172707.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like, partial [Cucumis sativus]
          Length = 610

 Score =  311 bits (796), Expect = 8e-82,   Method: Compositional matrix adjust.
 Identities = 184/535 (34%), Positives = 273/535 (51%), Gaps = 24/535 (4%)

Query: 73  VVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPI 132
           V SW  +        ++  AR LF+  P+  V  WN++  G   N    E   +F  M  
Sbjct: 64  VTSWVGL-------KQMAHARHLFDHFPDPKVELWNAISRGYFHNAFYREVVFLFGKMKS 116

Query: 133 KNVISWNAMIAGYVECCMMGEAIVLFEEME--------ERNVVTWTSMISGYCRAGEVEE 184
            +V          ++ C    A V  EE+         E N    T++I  Y     +  
Sbjct: 117 MDVRPNCFTFPLVLKSCAKIGAFVEGEEIHCEVIKGGLEGNQFVATTLIDVYSGGRAIGS 176

Query: 185 GYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMING 244
            Y LF  M  +N+V+WT+MI G+        +  LF       D     +V   N M++G
Sbjct: 177 AYKLFVGMLERNIVAWTSMISGYILCNRVALARRLF-------DLAPERDVVLWNIMVSG 229

Query: 245 YIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMI 304
           YI  G ++ A+ LFDT+P RD +SW +M++GY + G V     LF  MP+R+  +W  +I
Sbjct: 230 YIEIGDMKAARKLFDTMPYRDTMSWNTMLNGYANNGDVEACEQLFEEMPERNVFSWNGLI 289

Query: 305 SGLVQNELFVEATYLFMEMRAHG-VPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTES 363
            G   N  F E    F  M   G V P +AT   +  A      +DLG+ +H        
Sbjct: 290 GGYAHNGCFFEVLRCFKRMLIDGLVVPNDATLVTVLSACARLGALDLGKWVHVYAATIGF 349

Query: 364 ESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFES 423
           +  + + N LI MY+KCG+I+NA  +F +M  +DL++WNSM+ G + HG   + L +F  
Sbjct: 350 KGSIYVGNALIDMYSKCGLIENAMEVFESMDLKDLITWNSMICGLATHGCGADALTLFHQ 409

Query: 424 MLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAG 483
           M  +G  P+ +TF+G+L +C+H GLV  G   FN+M + Y I P  EHY  M++L GRAG
Sbjct: 410 MKINGEKPDGITFIGVLCSCTHLGLVEEGTSYFNSMVNEYSIAPQIEHYGCMVDLFGRAG 469

Query: 484 KIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLC 543
            +  A EFV R+P E D  IW ALLGAC   + N ++AE A ++L+ L+P N   +V+L 
Sbjct: 470 LLDRAIEFVKRMPMEADAVIWAALLGACRIYK-NIDLAELALQKLIVLEPKNPANYVLLS 528

Query: 544 NIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
           NIY   GR  +  +L++ M   G +K+PGCS +  N  +  F S D+  +Q  EI
Sbjct: 529 NIYGDLGRWKDVARLKILMRDTGSKKLPGCSLIEVNDSVVEFYSLDERHSQSKEI 583



 Score =  151 bits (382), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 115/416 (27%), Positives = 196/416 (47%), Gaps = 17/416 (4%)

Query: 5   NHPKSLVVHLTSSITK-YSKRGFIDEAKALFQLMPQRNV----VSYNAMLSGFLQNGRLS 59
           +H     V L ++I++ Y    F  E   LF  M   +V     ++  +L    + G   
Sbjct: 81  DHFPDPKVELWNAISRGYFHNAFYREVVFLFGKMKSMDVRPNCFTFPLVLKSCAKIGAFV 140

Query: 60  EARRLFEEMP----ERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLI 115
           E   +  E+     E N    T +I   +    +  A KLF  M ERN+V+W SM+ G I
Sbjct: 141 EGEEIHCEVIKGGLEGNQFVATTLIDVYSGGRAIGSAYKLFVGMLERNIVAWTSMISGYI 200

Query: 116 RNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISG 175
               +  AR++F+  P ++V+ WN M++GY+E   M  A  LF+ M  R+ ++W +M++G
Sbjct: 201 LCNRVALARRLFDLAPERDVVLWNIMVSGYIEIGDMKAARKLFDTMPYRDTMSWNTMLNG 260

Query: 176 YCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNV 235
           Y   G+VE    LF  MP +NV SW  +IGG+A NG   E L  F  M  + D     N 
Sbjct: 261 YANNGDVEACEQLFEEMPERNVFSWNGLIGGYAHNGCFFEVLRCFKRM--LIDGLVVPND 318

Query: 236 QSCNSMINGYIRFGRLEEAQNLF---DTVPVRDEIS-WTSMIDGYLSVGQVSNAYYLFHN 291
            +  ++++   R G L+  + +     T+  +  I    ++ID Y   G + NA  +F +
Sbjct: 319 ATLVTVLSACARLGALDLGKWVHVYAATIGFKGSIYVGNALIDMYSKCGLIENAMEVFES 378

Query: 292 MPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLG 351
           M  +D + W +MI GL  +    +A  LF +M+ +G  P   TF  +  +      ++ G
Sbjct: 379 MDLKDLITWNSMICGLATHGCGADALTLFHQMKINGEKPDGITFIGVLCSCTHLGLVEEG 438

Query: 352 RQIHCVLMKTESESDLILE-NCLISMYAKCGVIDNAYNIFSNM-VSRDLVSWNSMV 405
                 ++   S +  I    C++ ++ + G++D A      M +  D V W +++
Sbjct: 439 TSYFNSMVNEYSIAPQIEHYGCMVDLFGRAGLLDRAIEFVKRMPMEADAVIWAALL 494



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 97/319 (30%), Positives = 160/319 (50%), Gaps = 23/319 (7%)

Query: 1   MSERNHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSE 60
           M ERN     +V  TS I+ Y     +  A+ LF L P+R+VV +N M+SG+++ G +  
Sbjct: 184 MLERN-----IVAWTSMISGYILCNRVALARRLFDLAPERDVVLWNIMVSGYIEIGDMKA 238

Query: 61  ARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGEL 120
           AR+LF+ MP R+ +SW  M+ G A+ G V    +LFEEMPERNV SWN ++ G   NG  
Sbjct: 239 ARKLFDTMPYRDTMSWNTMLNGYANNGDVEACEQLFEEMPERNVFSWNGLIGGYAHNGCF 298

Query: 121 NEARKVFNSMPIKNVISWN-AMIAGYVECCMMGEAIVLFEEME--------ERNVVTWTS 171
            E  + F  M I  ++  N A +   +  C    A+ L + +         + ++    +
Sbjct: 299 FEVLRCFKRMLIDGLVVPNDATLVTVLSACARLGALDLGKWVHVYAATIGFKGSIYVGNA 358

Query: 172 MISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGN 231
           +I  Y + G +E    +F  M  K++++W +MI G A +G   ++L LF +MK    NG 
Sbjct: 359 LIDMYSKCGLIENAMEVFESMDLKDLITWNSMICGLATHGCGADALTLFHQMK---INGE 415

Query: 232 NCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEIS-----WTSMIDGYLSVGQVSNAY 286
             +  +   ++      G +EE  + F+++     I+     +  M+D +   G +  A 
Sbjct: 416 KPDGITFIGVLCSCTHLGLVEEGTSYFNSMVNEYSIAPQIEHYGCMVDLFGRAGLLDRAI 475

Query: 287 YLFHNMP-DRDAVAWTAMI 304
                MP + DAV W A++
Sbjct: 476 EFVKRMPMEADAVIWAALL 494



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 66/281 (23%), Positives = 127/281 (45%), Gaps = 12/281 (4%)

Query: 271 SMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPP 330
           +++  ++ + Q+++A +LF + PD     W A+  G   N  + E  +LF +M++  V P
Sbjct: 62  NVVTSWVGLKQMAHARHLFDHFPDPKVELWNAISRGYFHNAFYREVVFLFGKMKSMDVRP 121

Query: 331 LNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIF 390
              TF ++  +         G +IHC ++K   E +  +   LI +Y+    I +AY +F
Sbjct: 122 NCFTFPLVLKSCAKIGAFVEGEEIHCEVIKGGLEGNQFVATTLIDVYSGGRAIGSAYKLF 181

Query: 391 SNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVS 450
             M+ R++V+W SM+ G+    L N  + +   + +     + V +  ++S     G + 
Sbjct: 182 VGMLERNIVAWTSMISGYI---LCNR-VALARRLFDLAPERDVVLWNIMVSGYIEIGDMK 237

Query: 451 RGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGA 510
              +LF+ M   Y+       + +M+N     G ++  E+    +P E +   W  L+G 
Sbjct: 238 AARKLFDTM--PYR---DTMSWNTMLNGYANNGDVEACEQLFEEMP-ERNVFSWNGLIGG 291

Query: 511 CGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGR 551
                   E+     KR+L +D L  P    L  + +A  R
Sbjct: 292 YAHNGCFFEVLR-CFKRML-IDGLVVPNDATLVTVLSACAR 330


>gi|147798551|emb|CAN72187.1| hypothetical protein VITISV_012899 [Vitis vinifera]
          Length = 690

 Score =  311 bits (796), Expect = 9e-82,   Method: Compositional matrix adjust.
 Identities = 194/614 (31%), Positives = 316/614 (51%), Gaps = 69/614 (11%)

Query: 5   NHPKSLVVHLTSSITKYSKRGFIDEAKALF-------QLMPQRNVVSYNAMLSGFLQNGR 57
           N+P SL   +  + +  S +  ++ A+ LF       +   Q N   +NA++  F     
Sbjct: 100 NNP-SLTTRIILNFSSSSHKPLVEFARYLFMSRHFGRKHRKQDNPFLWNAIIKSFSHGED 158

Query: 58  LSEARRLFEEMPERNV----VSWTAMICGLADAGRVCEARKLFEEMPE----RNVVSWNS 109
             EA  +F  M E  V     S++ ++   +  G + E  ++   +       +V   N 
Sbjct: 159 PXEAFXIFNLMLENGVCVDKFSFSLVLKACSRLGLIKEGMQIHGLLGXMEIGSDVFLQNC 218

Query: 110 MVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFE--EMEERNVV 167
           ++   +R G L  AR++F+ M  ++ +S+N+MI GYV+  M+  A  LF+   ME++N++
Sbjct: 219 LMCLYLRCGCLGIARQLFDRMMXRDSVSFNSMIDGYVKHGMVKSARELFDVMPMEQKNLI 278

Query: 168 TWTSMISGYCRAGE-VEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGI 226
           +W SMISGY R+ E +   + LF  MP+++++SW                          
Sbjct: 279 SWNSMISGYARSEEGLRVAWELFEEMPKRDLISW-------------------------- 312

Query: 227 CDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAY 286
                       NSMI+G ++ G++E A +LF+ +P RD +SW +M+DGY  +G++  A 
Sbjct: 313 ------------NSMIDGCVKCGKMENAHHLFNXMPKRDVVSWANMVDGYAKLGEIDIAR 360

Query: 287 YLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHG-VPPLNATFSVLFGAAGAT 345
            LF  MP+RD ++  AM++G VQN   +EA   F +M +   + P NAT  +   A    
Sbjct: 361 GLFDEMPERDVISCNAMMAGYVQNGXLMEALXFFHDMLSXKELFPXNATLLITLSAIAQL 420

Query: 346 ANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMV 405
            + D G  +HC +          L   LI MYAKCG IDNA           +  WN+++
Sbjct: 421 GHFDEGVALHCYIEDNGFSLSEKLGXALIDMYAKCGSIDNAL----------IDHWNAIJ 470

Query: 406 MGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKI 465
            G + HGL     ++F  M +    PB +TF+G+L+AC+HAGLV  G   F  M  V+K+
Sbjct: 471 XGLAIHGLGEVAFELFMEMEKLFVKPBDITFIGVLNACNHAGLVKEGLMXFXLMRXVHKV 530

Query: 466 QPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAA 525
           +P  +HY  M+++LGRAG ++E ++FV ++P EP+  +W  LL AC   E N  I E  A
Sbjct: 531 EPKLQHYGCMVDILGRAGHVEEXKKFVEKMPIEPNDVVWRTLLSACRNHE-NFTIGEPVA 589

Query: 526 KRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMF 585
           K L+ +D  N  ++V+L NIYA  G   + +++RM M  + ++K+PGCS +   G +  F
Sbjct: 590 KHLISVDSYNPSSYVLLSNIYAXFGMWNDVYRIRMMMKQRDLKKIPGCSQIELEGNVHEF 649

Query: 586 LSGDKIPAQVAEIL 599
              DK   Q   I+
Sbjct: 650 FVRDKSHPQRLPIV 663



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 125/455 (27%), Positives = 212/455 (46%), Gaps = 48/455 (10%)

Query: 21  YSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMP--ERNVVSWTA 78
           Y + G +  A+ LF  M  R+ VS+N+M+ G++++G +  AR LF+ MP  ++N++SW +
Sbjct: 223 YLRCGCLGIARQLFDRMMXRDSVSFNSMIDGYVKHGMVKSARELFDVMPMEQKNLISWNS 282

Query: 79  MICGLADAGRVCE-ARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVIS 137
           MI G A +      A +LFEEMP+R+++SWNSM+ G ++ G++  A  +FN MP ++V+S
Sbjct: 283 MISGYARSEEGLRVAWELFEEMPKRDLISWNSMIDGCVKCGKMENAHHLFNXMPKRDVVS 342

Query: 138 WNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKN- 196
           W  M+ GY +   +  A  LF+EM ER+V++  +M++GY + G + E    F  M     
Sbjct: 343 WANMVDGYAKLGEIDIARGLFDEMPERDVISCNAMMAGYVQNGXLMEALXFFHDMLSXKE 402

Query: 197 ----------VVSWTAMIGGFAW----------NGFHKESLL--LFIEMKGICDNGNNCN 234
                      +S  A +G F            NGF     L    I+M   C + +N  
Sbjct: 403 LFPXNATLLITLSAIAQLGHFDEGVALHCYIEDNGFSLSEKLGXALIDMYAKCGSIDNAL 462

Query: 235 VQSCNSMINGYIRFGRLEEAQNLF---DTVPVR-DEISWTSMIDGYLSVGQVSNAYYLFH 290
           +   N++J G    G  E A  LF   + + V+ B+I++  +++     G V      F 
Sbjct: 463 IDHWNAIJXGLAIHGLGEVAFELFMEMEKLFVKPBDITFIGVLNACNHAGLVKEGLMXFX 522

Query: 291 NMPDRDAVAWTAMISGLVQNEL----FVEATYLFMEMRAHGVPPLNATFSVLFGAAGATA 346
            M     V       G + + L     VE    F+E     + P +  +  L  A     
Sbjct: 523 LMRXVHKVEPKLQHYGCMVDILGRAGHVEEXKKFVEKMP--IEPNDVVWRTLLSACRNHE 580

Query: 347 NIDLGRQI--HCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSM 404
           N  +G  +  H + + + + S  +L   L ++YA  G+ ++ Y I   M  RDL      
Sbjct: 581 NFTIGEPVAKHLISVDSYNPSSYVL---LSNIYAXFGMWNDVYRIRMMMKQRDL----KK 633

Query: 405 VMGFSHHGLANETLKVFESMLESGTHPNSVTFLGI 439
           + G S   L      V E  +   +HP  +  + I
Sbjct: 634 IPGCSQIELEGN---VHEFFVRDKSHPQRLPIVNI 665


>gi|449441542|ref|XP_004138541.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Cucumis sativus]
          Length = 652

 Score =  310 bits (795), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 184/535 (34%), Positives = 273/535 (51%), Gaps = 24/535 (4%)

Query: 73  VVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPI 132
           V SW  +        ++  AR LF+  P+  V  WN++  G   N    E   +F  M  
Sbjct: 106 VTSWVGL-------KQMAHARHLFDHFPDPKVELWNAISRGYFHNAFYREVVFLFGKMKS 158

Query: 133 KNVISWNAMIAGYVECCMMGEAIVLFEEME--------ERNVVTWTSMISGYCRAGEVEE 184
            +V          ++ C    A V  EE+         E N    T++I  Y     +  
Sbjct: 159 MDVRPNCFTFPLVLKSCAKIGAFVEGEEIHCEVIKGGLEGNQFVATTLIDVYSGGRAIGS 218

Query: 185 GYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMING 244
            Y LF  M  +N+V+WT+MI G+        +  LF       D     +V   N M++G
Sbjct: 219 AYKLFVGMLERNIVAWTSMISGYILCNRVALARRLF-------DLAPERDVVLWNIMVSG 271

Query: 245 YIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMI 304
           YI  G ++ A+ LFDT+P RD +SW +M++GY + G V     LF  MP+R+  +W  +I
Sbjct: 272 YIEIGDMKAARKLFDTMPYRDTMSWNTMLNGYANNGDVEACEQLFEEMPERNVFSWNGLI 331

Query: 305 SGLVQNELFVEATYLFMEMRAHG-VPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTES 363
            G   N  F E    F  M   G V P +AT   +  A      +DLG+ +H        
Sbjct: 332 GGYAHNGCFFEVLRCFKRMLIDGLVVPNDATLVTVLSACARLGALDLGKWVHVYAATIGF 391

Query: 364 ESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFES 423
           +  + + N LI MY+KCG+I+NA  +F +M  +DL++WNSM+ G + HG   + L +F  
Sbjct: 392 KGSIYVGNALIDMYSKCGLIENAMEVFESMDLKDLITWNSMICGLATHGCGADALTLFHQ 451

Query: 424 MLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAG 483
           M  +G  P+ +TF+G+L +C+H GLV  G   FN+M + Y I P  EHY  M++L GRAG
Sbjct: 452 MKINGEKPDGITFIGVLCSCTHLGLVEEGTSYFNSMVNEYSIAPQIEHYGCMVDLFGRAG 511

Query: 484 KIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLC 543
            +  A EFV R+P E D  IW ALLGAC   + N ++AE A ++L+ L+P N   +V+L 
Sbjct: 512 LLDRAIEFVKRMPMEADAVIWAALLGACRIYK-NIDLAELALQKLIVLEPKNPANYVLLS 570

Query: 544 NIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
           NIY   GR  +  +L++ M   G +K+PGCS +  N  +  F S D+  +Q  EI
Sbjct: 571 NIYGDLGRWKDVARLKILMRDTGSKKLPGCSLIEVNDSVVEFYSLDERHSQSKEI 625



 Score =  151 bits (382), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 115/416 (27%), Positives = 196/416 (47%), Gaps = 17/416 (4%)

Query: 5   NHPKSLVVHLTSSITK-YSKRGFIDEAKALFQLMPQRNV----VSYNAMLSGFLQNGRLS 59
           +H     V L ++I++ Y    F  E   LF  M   +V     ++  +L    + G   
Sbjct: 123 DHFPDPKVELWNAISRGYFHNAFYREVVFLFGKMKSMDVRPNCFTFPLVLKSCAKIGAFV 182

Query: 60  EARRLFEEMP----ERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLI 115
           E   +  E+     E N    T +I   +    +  A KLF  M ERN+V+W SM+ G I
Sbjct: 183 EGEEIHCEVIKGGLEGNQFVATTLIDVYSGGRAIGSAYKLFVGMLERNIVAWTSMISGYI 242

Query: 116 RNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISG 175
               +  AR++F+  P ++V+ WN M++GY+E   M  A  LF+ M  R+ ++W +M++G
Sbjct: 243 LCNRVALARRLFDLAPERDVVLWNIMVSGYIEIGDMKAARKLFDTMPYRDTMSWNTMLNG 302

Query: 176 YCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNV 235
           Y   G+VE    LF  MP +NV SW  +IGG+A NG   E L  F  M  + D     N 
Sbjct: 303 YANNGDVEACEQLFEEMPERNVFSWNGLIGGYAHNGCFFEVLRCFKRM--LIDGLVVPND 360

Query: 236 QSCNSMINGYIRFGRLEEAQNLF---DTVPVRDEIS-WTSMIDGYLSVGQVSNAYYLFHN 291
            +  ++++   R G L+  + +     T+  +  I    ++ID Y   G + NA  +F +
Sbjct: 361 ATLVTVLSACARLGALDLGKWVHVYAATIGFKGSIYVGNALIDMYSKCGLIENAMEVFES 420

Query: 292 MPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLG 351
           M  +D + W +MI GL  +    +A  LF +M+ +G  P   TF  +  +      ++ G
Sbjct: 421 MDLKDLITWNSMICGLATHGCGADALTLFHQMKINGEKPDGITFIGVLCSCTHLGLVEEG 480

Query: 352 RQIHCVLMKTESESDLILE-NCLISMYAKCGVIDNAYNIFSNM-VSRDLVSWNSMV 405
                 ++   S +  I    C++ ++ + G++D A      M +  D V W +++
Sbjct: 481 TSYFNSMVNEYSIAPQIEHYGCMVDLFGRAGLLDRAIEFVKRMPMEADAVIWAALL 536



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 97/319 (30%), Positives = 160/319 (50%), Gaps = 23/319 (7%)

Query: 1   MSERNHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSE 60
           M ERN     +V  TS I+ Y     +  A+ LF L P+R+VV +N M+SG+++ G +  
Sbjct: 226 MLERN-----IVAWTSMISGYILCNRVALARRLFDLAPERDVVLWNIMVSGYIEIGDMKA 280

Query: 61  ARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGEL 120
           AR+LF+ MP R+ +SW  M+ G A+ G V    +LFEEMPERNV SWN ++ G   NG  
Sbjct: 281 ARKLFDTMPYRDTMSWNTMLNGYANNGDVEACEQLFEEMPERNVFSWNGLIGGYAHNGCF 340

Query: 121 NEARKVFNSMPIKNVISWN-AMIAGYVECCMMGEAIVLFEEME--------ERNVVTWTS 171
            E  + F  M I  ++  N A +   +  C    A+ L + +         + ++    +
Sbjct: 341 FEVLRCFKRMLIDGLVVPNDATLVTVLSACARLGALDLGKWVHVYAATIGFKGSIYVGNA 400

Query: 172 MISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGN 231
           +I  Y + G +E    +F  M  K++++W +MI G A +G   ++L LF +MK    NG 
Sbjct: 401 LIDMYSKCGLIENAMEVFESMDLKDLITWNSMICGLATHGCGADALTLFHQMK---INGE 457

Query: 232 NCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEIS-----WTSMIDGYLSVGQVSNAY 286
             +  +   ++      G +EE  + F+++     I+     +  M+D +   G +  A 
Sbjct: 458 KPDGITFIGVLCSCTHLGLVEEGTSYFNSMVNEYSIAPQIEHYGCMVDLFGRAGLLDRAI 517

Query: 287 YLFHNMP-DRDAVAWTAMI 304
                MP + DAV W A++
Sbjct: 518 EFVKRMPMEADAVIWAALL 536



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 66/281 (23%), Positives = 127/281 (45%), Gaps = 12/281 (4%)

Query: 271 SMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPP 330
           +++  ++ + Q+++A +LF + PD     W A+  G   N  + E  +LF +M++  V P
Sbjct: 104 NVVTSWVGLKQMAHARHLFDHFPDPKVELWNAISRGYFHNAFYREVVFLFGKMKSMDVRP 163

Query: 331 LNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIF 390
              TF ++  +         G +IHC ++K   E +  +   LI +Y+    I +AY +F
Sbjct: 164 NCFTFPLVLKSCAKIGAFVEGEEIHCEVIKGGLEGNQFVATTLIDVYSGGRAIGSAYKLF 223

Query: 391 SNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVS 450
             M+ R++V+W SM+ G+    L N  + +   + +     + V +  ++S     G + 
Sbjct: 224 VGMLERNIVAWTSMISGYI---LCNR-VALARRLFDLAPERDVVLWNIMVSGYIEIGDMK 279

Query: 451 RGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGA 510
              +LF+ M   Y+       + +M+N     G ++  E+    +P E +   W  L+G 
Sbjct: 280 AARKLFDTM--PYR---DTMSWNTMLNGYANNGDVEACEQLFEEMP-ERNVFSWNGLIGG 333

Query: 511 CGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGR 551
                   E+     KR+L +D L  P    L  + +A  R
Sbjct: 334 YAHNGCFFEVLR-CFKRML-IDGLVVPNDATLVTVLSACAR 372


>gi|255551485|ref|XP_002516788.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223543876|gb|EEF45402.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 710

 Score =  310 bits (795), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 192/604 (31%), Positives = 301/604 (49%), Gaps = 49/604 (8%)

Query: 16  SSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVS 75
           S I  Y K G + +AK++F + P+ + VSYN M+SG++++G+L  A  LF+EMP +  VS
Sbjct: 106 SLINMYGKCGLLVDAKSIFDVCPRSDPVSYNVMISGYVKSGQLDYACELFDEMPVKGCVS 165

Query: 76  WTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRN------------------ 117
           +T MI G +      +A +LF++M    VV     +  L+                    
Sbjct: 166 YTTMIMGFSQNECWNQAVELFKQMRNVGVVPNEVTIATLVSAYSHFGGIWACRMLHGLVI 225

Query: 118 ---------------------GELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIV 156
                                  L EAR +F+ MP KN++SWN M+ GY +   +  A V
Sbjct: 226 KMLFEEFVLVSTNLLRMYCVCSSLVEARALFDEMPEKNIVSWNVMLNGYSKAGFVDSARV 285

Query: 157 LFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMP----RKNVVSWTAMIGGFAWNGF 212
           +FE +  +++VTW ++I GY R   + E   ++R M       N V    +I G      
Sbjct: 286 VFERIPNKDLVTWGTIIDGYVRVERINEALMMYRSMISAGWEPNDVMMVDLISGCGRTMA 345

Query: 213 HKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSM 272
             E   L   +  +   G +C     +++I+ Y   GR+ EA   F      +  SW ++
Sbjct: 346 MTEGQQL---LSAVVKMGFDCYDFIQSTIIHLYAACGRINEACLQFRIGSKENVASWNAL 402

Query: 273 IDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLN 332
           I GY+    +  A  LF+ MP+RD  +W+ MISG  QNE    A  LF +M A G+ P  
Sbjct: 403 IAGYVRNRMIDRAMELFNEMPERDVFSWSTMISGYTQNEQPNLALELFHKMVASGIKPNE 462

Query: 333 ATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSN 392
            T   +  A   +  +  GR  H  +          L   +I MYAKCG I+NA  +F  
Sbjct: 463 VTMVSVLSAIATSGTLKEGRWAHEYVHNNSITVSDNLSAAIIDMYAKCGSINNALEVFYE 522

Query: 393 MVSR--DLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVS 450
           +  +   +  WN+++ G + HG AN +LK+F  +       N++TF+G+L+AC H GLV 
Sbjct: 523 IREKASTVSPWNAIICGLAVHGHANLSLKIFSDLERRHIKLNAITFIGVLTACCHVGLVE 582

Query: 451 RGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGA 510
            G   F +M   + I P  +HY  M++LLGRAG+++EAEE +  +P + D  IWG LL A
Sbjct: 583 SGKRHFMSMKSEHSIDPDIKHYGCMVDLLGRAGRLEEAEEMIRSMPMKADVVIWGTLLAA 642

Query: 511 CGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKV 570
           C    GN ++ E AA+ L  L+P +  + V+L N+YA +G+  +   +R  M    ++++
Sbjct: 643 CR-THGNVDVGERAAENLARLEPSHGASRVLLSNMYADAGKWEDAFLVRRAMQSHRMQRL 701

Query: 571 PGCS 574
           PG S
Sbjct: 702 PGYS 705



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 95/316 (30%), Positives = 149/316 (47%), Gaps = 45/316 (14%)

Query: 230 GNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLF 289
           G+N  +Q  NS+IN Y + G L +A+++FD  P  D +S+  MI GY+  GQ+  A  LF
Sbjct: 98  GSNNFIQ--NSLINMYGKCGLLVDAKSIFDVCPRSDPVSYNVMISGYVKSGQLDYACELF 155

Query: 290 HNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANID 349
             MP +  V++T MI G  QNE + +A  LF +MR  GV P   T + L  A      I 
Sbjct: 156 DEMPVKGCVSYTTMIMGFSQNECWNQAVELFKQMRNVGVVPNEVTIATLVSAYSHFGGIW 215

Query: 350 LGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFS 409
             R +H +++K   E  +++   L+ MY  C  +  A  +F  M  +++VSWN M+ G+S
Sbjct: 216 ACRMLHGLVIKMLFEEFVLVSTNLLRMYCVCSSLVEARALFDEMPEKNIVSWNVMLNGYS 275

Query: 410 HHGLA-------------------------------NETLKVFESMLESGTHPNSVTFLG 438
             G                                 NE L ++ SM+ +G  PN V  + 
Sbjct: 276 KAGFVDSARVVFERIPNKDLVTWGTIIDGYVRVERINEALMMYRSMISAGWEPNDVMMVD 335

Query: 439 ILSACSHAGLVSRGWELFNAM----FDVYK-IQPGPEHYVSMINLLGRAGKIKEAEEFVL 493
           ++S C     ++ G +L +A+    FD Y  IQ       ++I+L    G+I EA     
Sbjct: 336 LISGCGRTMAMTEGQQLLSAVVKMGFDCYDFIQS------TIIHLYAACGRINEA-CLQF 388

Query: 494 RLPFEPDHRIWGALLG 509
           R+  + +   W AL+ 
Sbjct: 389 RIGSKENVASWNALIA 404



 Score = 65.9 bits (159), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 39/128 (30%), Positives = 62/128 (48%), Gaps = 31/128 (24%)

Query: 351 GRQIHCVLMKTESESDLILENCLISMYAKCGV---------------------------- 382
           G+QIHC++ K+   S+  ++N LI+MY KCG+                            
Sbjct: 85  GKQIHCLVSKSGLGSNNFIQNSLINMYGKCGLLVDAKSIFDVCPRSDPVSYNVMISGYVK 144

Query: 383 ---IDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGI 439
              +D A  +F  M  +  VS+ +M+MGFS +   N+ +++F+ M   G  PN VT   +
Sbjct: 145 SGQLDYACELFDEMPVKGCVSYTTMIMGFSQNECWNQAVELFKQMRNVGVVPNEVTIATL 204

Query: 440 LSACSHAG 447
           +SA SH G
Sbjct: 205 VSAYSHFG 212


>gi|224134923|ref|XP_002327523.1| predicted protein [Populus trichocarpa]
 gi|222836077|gb|EEE74498.1| predicted protein [Populus trichocarpa]
          Length = 635

 Score =  310 bits (795), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 177/489 (36%), Positives = 277/489 (56%), Gaps = 30/489 (6%)

Query: 118 GELNEARKVFNSMPIKNVISWNAMIAGY--VECCMMGEAIVLFEEMEERNV----VTWTS 171
           G++  AR++F+++P  +V SWN M  GY  + C  +G  + L+ EM ERNV     T+  
Sbjct: 62  GDMCYARQLFDTIPEPSVFSWNIMFKGYSRIACPKLG--VSLYLEMLERNVKPDCYTYPF 119

Query: 172 MISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGF-HKESLLLFIEM-KGICDN 229
           +  G+ R+  ++ G     R    +VV +      FA N   +  SL   I+M +GI D 
Sbjct: 120 LFKGFTRSVALQLG-----RELHCHVVKYGLDSNVFAHNALINMYSLCGLIDMARGIFDM 174

Query: 230 GNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLF 289
               +V + N+MI+GY R  +              D ISWT+++ G+++ GQV  A   F
Sbjct: 175 SCKSDVVTWNAMISGYNRIKK--------------DVISWTAIVTGFVNTGQVDAARKYF 220

Query: 290 HNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANID 349
           H MP+RD V+WTAMI G ++   + EA  LF EM+   + P   T   +  A      ++
Sbjct: 221 HKMPERDHVSWTAMIDGYLRLNCYKEALMLFREMQTSKIKPDEFTMVSVLTACAQLGALE 280

Query: 350 LGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFS 409
           LG  I   + K + ++D  + N LI MY KCG ++ A +IF+ +  RD  +W +MV+G +
Sbjct: 281 LGEWIRTYIDKNKVKNDTFVGNALIDMYFKCGNVEMALSIFNTLPQRDKFTWTAMVVGLA 340

Query: 410 HHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGP 469
            +G   E L +F  ML++   P+ VT++G+LSAC+H G+V  G + F +M   + I+P  
Sbjct: 341 INGCGEEALNMFSQMLKASVTPDEVTYVGVLSACTHTGMVDEGKKFFASMTARHGIEPNI 400

Query: 470 EHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLL 529
            HY  M++LLG+AG +KEA E +  +P +P+  +WGALLGAC     +AE+AE A +++L
Sbjct: 401 AHYGCMVDLLGKAGHLKEAHEIIKNMPMKPNSIVWGALLGACRI-HKDAEMAERAIEQIL 459

Query: 530 ELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGD 589
           EL+P N   +V+ CNIYAA  +  +  +LR  M  +G++K PGCS +  NG +  F++GD
Sbjct: 460 ELEPNNGAVYVLQCNIYAACNKWDKLRELRQVMMDRGIKKTPGCSLIEMNGIVHEFVAGD 519

Query: 590 KIPAQVAEI 598
           +   Q  EI
Sbjct: 520 QSHPQTKEI 528



 Score =  141 bits (356), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 124/481 (25%), Positives = 207/481 (43%), Gaps = 48/481 (9%)

Query: 9   SLVVHLTSSITKYSKRGFIDEAKALFQLMP-QRNVVSYNAMLSGFLQN-----------G 56
           S+    +S +T+       +  K+++ L       +    + +  +QN           G
Sbjct: 3   SMACSQSSPVTENPPLSLFETCKSMYHLKQIHSRTIKTGIICNPIIQNKILSFCCSREFG 62

Query: 57  RLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNV----VSWNSMVV 112
            +  AR+LF+ +PE +V SW  M  G +          L+ EM ERNV     ++  +  
Sbjct: 63  DMCYARQLFDTIPEPSVFSWNIMFKGYSRIACPKLGVSLYLEMLERNVKPDCYTYPFLFK 122

Query: 113 GLIRNGELNEARK----VFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVT 168
           G  R+  L   R+    V       NV + NA+I  Y  C ++  A  +F+   + +VVT
Sbjct: 123 GFTRSVALQLGRELHCHVVKYGLDSNVFAHNALINMYSLCGLIDMARGIFDMSCKSDVVT 182

Query: 169 WTSMISGYCR-----------------AGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNG 211
           W +MISGY R                  G+V+     F +MP ++ VSWTAMI G+    
Sbjct: 183 WNAMISGYNRIKKDVISWTAIVTGFVNTGQVDAARKYFHKMPERDHVSWTAMIDGYLRLN 242

Query: 212 FHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQ---NLFDTVPVR-DEI 267
            +KE+L+LF EM+      +   +    S++    + G LE  +      D   V+ D  
Sbjct: 243 CYKEALMLFREMQTSKIKPDEFTMV---SVLTACAQLGALELGEWIRTYIDKNKVKNDTF 299

Query: 268 SWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHG 327
              ++ID Y   G V  A  +F+ +P RD   WTAM+ GL  N    EA  +F +M    
Sbjct: 300 VGNALIDMYFKCGNVEMALSIFNTLPQRDKFTWTAMVVGLAINGCGEEALNMFSQMLKAS 359

Query: 328 VPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTES-ESDLILENCLISMYAKCGVIDNA 386
           V P   T+  +  A   T  +D G++    +      E ++    C++ +  K G +  A
Sbjct: 360 VTPDEVTYVGVLSACTHTGMVDEGKKFFASMTARHGIEPNIAHYGCMVDLLGKAGHLKEA 419

Query: 387 YNIFSNM-VSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFL--GILSAC 443
           + I  NM +  + + W +++     H  A    +  E +LE   +  +V  L   I +AC
Sbjct: 420 HEIIKNMPMKPNSIVWGALLGACRIHKDAEMAERAIEQILELEPNNGAVYVLQCNIYAAC 479

Query: 444 S 444
           +
Sbjct: 480 N 480



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 69/255 (27%), Positives = 107/255 (41%), Gaps = 49/255 (19%)

Query: 1   MSERNHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSE 60
           +S  N  K  V+  T+ +T +   G +D A+  F  MP+R+ VS+ AM+ G+L+     E
Sbjct: 187 ISGYNRIKKDVISWTAIVTGFVNTGQVDAARKYFHKMPERDHVSWTAMIDGYLRLNCYKE 246

Query: 61  ARRLFEEM-------PERNVVS---------------W-----------------TAMIC 81
           A  LF EM        E  +VS               W                  A+I 
Sbjct: 247 ALMLFREMQTSKIKPDEFTMVSVLTACAQLGALELGEWIRTYIDKNKVKNDTFVGNALID 306

Query: 82  GLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAM 141
                G V  A  +F  +P+R+  +W +MVVGL  NG   EA  +F+ M   +V      
Sbjct: 307 MYFKCGNVEMALSIFNTLPQRDKFTWTAMVVGLAINGCGEEALNMFSQMLKASVTPDEVT 366

Query: 142 IAGYVECC----MMGEAIVLFEEMEER-----NVVTWTSMISGYCRAGEVEEGYCLFRRM 192
             G +  C    M+ E    F  M  R     N+  +  M+    +AG ++E + + + M
Sbjct: 367 YVGVLSACTHTGMVDEGKKFFASMTARHGIEPNIAHYGCMVDLLGKAGHLKEAHEIIKNM 426

Query: 193 PRK-NVVSWTAMIGG 206
           P K N + W A++G 
Sbjct: 427 PMKPNSIVWGALLGA 441


>gi|449462338|ref|XP_004148898.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Cucumis sativus]
          Length = 675

 Score =  310 bits (795), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 202/616 (32%), Positives = 326/616 (52%), Gaps = 37/616 (6%)

Query: 5   NHPKSLVVHLTSSITKYSK-RGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARR 63
           ++P  L++   SS+ +  + +  I     + Q+ P   ++++ A+      +G +  A  
Sbjct: 52  SNPTLLILQSCSSMFQLKQIQAHITCTGLMNQIFPASRLLAFCALS----DSGDIHYAHL 107

Query: 64  LFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNS--MVVGLIRNGELN 121
           +F++    N   W  MI G   A         F +M  RN   ++S   V  L   G+  
Sbjct: 108 IFDQTELPNCFFWNTMIKGYCKANHPSMGFSFFRQMI-RNRAEFDSGSFVFALKACGQFA 166

Query: 122 EA-----------RKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWT 170
           E            ++ F+S    ++   N +I  YVE   +G A  +F+E   ++VVTWT
Sbjct: 167 EKIVGMAVHSVIWKRGFDS----DLFVQNGLIQNYVETGCLGFARQMFDESSVKDVVTWT 222

Query: 171 SMISGYCRAGEVEEGYCLFRRM----PRKNVVSWTAMIGGFAWNGFHK--ESLLLFIEMK 224
           +MI+GY R   ++E   LF  M     + N V+  A++   +  G  +  ++L   I  K
Sbjct: 223 TMINGYARNNWLDEAIALFNSMLSSDVKPNEVTMIALLSACSQKGDSEMGKTLHEHIRRK 282

Query: 225 GICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSN 284
            I      C++   N+M++ Y++ G L  A+ +F+ +  RD  SWTS+++GY   G + +
Sbjct: 283 DI-----TCSLNLLNAMLDMYVKCGCLTTAREIFNNMERRDVFSWTSLLNGYAKNGDLGS 337

Query: 285 AYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEM-RAHGVPPLNATFSVLFGAAG 343
           A  LF  MP+R+ V+W AMI+G  QN   +EA  LF  M    G+ P   T   +  A+G
Sbjct: 338 ARKLFDEMPERNIVSWNAMIAGYSQNSQPMEALELFHNMVDVVGLVPTEDTLVCVLSASG 397

Query: 344 ATANIDLGRQIHC-VLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWN 402
               +++G++IHC  + K   +  LIL+N ++ MYAKCG ID A  +F +M  ++LVSWN
Sbjct: 398 QLGCLEMGQEIHCNHVNKIGIQVSLILKNAVMDMYAKCGSIDAAAKLFHSMPEKNLVSWN 457

Query: 403 SMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDV 462
           SM+  ++ +G A + L +F+ M+ SG  P+ +TF+G+LSACS+ G VS G   F +M + 
Sbjct: 458 SMISAYASYGHAKKALTLFDQMIGSGLKPDHITFIGVLSACSYGGFVSEGQAHFESMENC 517

Query: 463 YKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAE 522
           + ++P  EHY  M++LL R G +KEA E + R+P E     WGALL AC    GN E+A+
Sbjct: 518 FGVEPKREHYACMVDLLSRVGLLKEAYELISRMPMEASEGGWGALLDACR-KHGNVEMAK 576

Query: 523 HAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGI 582
            A ++LLELDP ++  + +L NI A   +  +   +R  M  +GV+KVPG S +   G  
Sbjct: 577 LAGEKLLELDPEDSGIYSLLANICADGKKWKDVRMVRRMMRERGVKKVPGHSLIEIEGKF 636

Query: 583 QMFLSGDKIPAQVAEI 598
             FL  D    + +EI
Sbjct: 637 HEFLVADTSHTRSSEI 652


>gi|147801171|emb|CAN62238.1| hypothetical protein VITISV_014689 [Vitis vinifera]
          Length = 957

 Score =  310 bits (795), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 196/643 (30%), Positives = 334/643 (51%), Gaps = 59/643 (9%)

Query: 9   SLVVHLTSSITKYSKRGFIDEAKALFQLMPQR-NVVSYNAMLSGFLQNGRLSEARRLFEE 67
           S+V    S +  Y+K   ++ A+ LF  MP++ +VVS+N+M+S +  NG+  EA RLF E
Sbjct: 213 SIVFVANSIVGMYTKCNDLNGARQLFDRMPEKEDVVSWNSMISAYSSNGQSIEALRLFGE 272

Query: 68  MPER----NVVSWTAMICGLADAGRVCEARKLFEEMPER----NVVSWNSMVVGLIRNGE 119
           M +     N  ++ A +    D+  + +   +   + +     NV   N+++    R G+
Sbjct: 273 MQKASLAPNTYTFVAALQACEDSSFIKQGMFIHATVLKSSYYINVFVANALIAMYARFGK 332

Query: 120 LNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEM----EERNVVTWTSMISG 175
           + EA  +F +M   + ISWN+M++G+V+  +  EA+  + EM    ++ ++V   S+I+ 
Sbjct: 333 MGEAANIFYNMDDWDTISWNSMLSGFVQNGLYHEALQFYHEMRDAGQKPDLVAVISIIAA 392

Query: 176 YCRAGEVEEGY-----------------------------------CLFRRMPRKNVVSW 200
             R+G    G                                    C+F +MP K+VVSW
Sbjct: 393 SARSGNTLHGMQIHAYAMKNGLDSDLQVGNSLVDMYAKFCSMKYMDCIFDKMPDKDVVSW 452

Query: 201 TAMIGGFAWNGFHKESLLLF--IEMKGICDNGNNCNVQSCNSMI---NGYIRFGRLEEAQ 255
           T +I G A NG H  +L LF  ++++GI     + +V   +S++   +G      ++E  
Sbjct: 453 TTIIAGHAQNGSHSRALELFREVQLEGI-----DLDVMMISSILLACSGLKLISSVKEIH 507

Query: 256 NLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVE 315
           +      + D +    ++D Y   G V  A  +F  +  +D V+WT+MIS  V N L  E
Sbjct: 508 SYIIRKGLSDLVLQNGIVDVYGECGNVDYAARMFELIEFKDVVSWTSMISCYVHNGLANE 567

Query: 316 ATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLIS 375
           A  LF  M+  GV P + +   +  AA + + +  G++IH  L++     +  L + L+ 
Sbjct: 568 ALELFHLMKETGVEPDSISLVSILSAAASLSALKKGKEIHGFLIRKGFVLEGSLASTLVD 627

Query: 376 MYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVT 435
           MYA+CG ++ + N+F+ + ++DLV W SM+  +  HG     + +F  M +    P+ + 
Sbjct: 628 MYARCGTLEKSRNVFNFIRNKDLVLWTSMINAYGMHGCGRAAIDLFRRMEDESIAPDHIA 687

Query: 436 FLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRL 495
           F+ +L ACSH+GL++ G     +M   Y+++P PEHY  +++LLGRA  ++EA +FV  +
Sbjct: 688 FVAVLYACSHSGLMNEGRRFLESMKYEYQLEPWPEHYACLVDLLGRANHLEEAYQFVKGM 747

Query: 496 PFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEE 555
             EP   +W ALLGAC     N E+ E AA++LLE+DP N   +V++ N+Y+A  R  + 
Sbjct: 748 EVEPTAEVWCALLGACQI-HSNKELGEIAAQKLLEMDPENPGNYVLVSNVYSAERRWKDV 806

Query: 556 HKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
             +RM M   G++K PGCSW+     +  F++ DK   Q  EI
Sbjct: 807 EXVRMRMKASGLKKNPGCSWIEVGNKVHTFMARDKSHPQSYEI 849



 Score =  145 bits (366), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 138/554 (24%), Positives = 234/554 (42%), Gaps = 101/554 (18%)

Query: 15  TSSITKYSKRGFIDEA-KALFQLMPQRNVV------SYNAMLSGFLQNGRLSEARRLFEE 67
           T S+ +  KRG ++EA ++L  L   ++        +Y+++L        LSE +++   
Sbjct: 44  TPSLREICKRGSVNEAFQSLTDLFANQSPSQFSLDEAYSSVLELCGSKKALSEGQQVHAH 103

Query: 68  MPERN-----VVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNE 122
           M   N     V   T ++      G + +A KLF+ MP + + +WN+M+   + NGE   
Sbjct: 104 MITSNALFNSVFLSTRLVFMYGKCGCLVDAEKLFDGMPHKTIFTWNAMIGAYVTNGEPLG 163

Query: 123 ARKVFNSMPIKN---------------------------------------VISWNAMIA 143
           + +++  M +                                         V   N+++ 
Sbjct: 164 SLELYREMRVSGIPLDACTFPCILKACGLLKDRRYGAEVHGLAIKEGYVSIVFVANSIVG 223

Query: 144 GYVECCMMGEAIVLFEEMEER-NVVTWTSMISGYCRAGEVEEGYCLFRRMPRK----NVV 198
            Y +C  +  A  LF+ M E+ +VV+W SMIS Y   G+  E   LF  M +     N  
Sbjct: 224 MYTKCNDLNGARQLFDRMPEKEDVVSWNSMISAYSSNGQSIEALRLFGEMQKASLAPNTY 283

Query: 199 SWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLF 258
           ++ A +     + F K+ + +      +  +    NV   N++I  Y RFG++ EA N+F
Sbjct: 284 TFVAALQACEDSSFIKQGMFIHAT---VLKSSYYINVFVANALIAMYARFGKMGEAANIF 340

Query: 259 DTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATY 318
             +   D ISW SM+ G+                               VQN L+ EA  
Sbjct: 341 YNMDDWDTISWNSMLSGF-------------------------------VQNGLYHEALQ 369

Query: 319 LFMEMRAHGVPP-LNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMY 377
            + EMR  G  P L A  S++  A+  + N   G QIH   MK   +SDL + N L+ MY
Sbjct: 370 FYHEMRDAGQKPDLVAVISII-AASARSGNTLHGMQIHAYAMKNGLDSDLQVGNSLVDMY 428

Query: 378 AKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFL 437
           AK   +     IF  M  +D+VSW +++ G + +G  +  L++F  +   G   + +   
Sbjct: 429 AKFCSMKYMDCIFDKMPDKDVVSWTTIIAGHAQNGSHSRALELFREVQLEGIDLDVMMIS 488

Query: 438 GILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYV---SMINLLGRAGKIKEAEEFVLR 494
            IL ACS   L+S   E+ +     Y I+ G    V    ++++ G  G +  A      
Sbjct: 489 SILLACSGLKLISSVKEIHS-----YIIRKGLSDLVLQNGIVDVYGECGNVDYAARMFEL 543

Query: 495 LPFEPDHRIWGALL 508
           + F+ D   W +++
Sbjct: 544 IEFK-DVVSWTSMI 556



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 81/290 (27%), Positives = 136/290 (46%), Gaps = 20/290 (6%)

Query: 270 TSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVP 329
           T ++  Y   G + +A  LF  MP +    W AMI   V N   + +  L+ EMR  G+P
Sbjct: 118 TRLVFMYGKCGCLVDAEKLFDGMPHKTIFTWNAMIGAYVTNGEPLGSLELYREMRVSGIP 177

Query: 330 PLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNI 389
               TF  +  A G   +   G ++H + +K    S + + N ++ MY KC  ++ A  +
Sbjct: 178 LDACTFPCILKACGLLKDRRYGAEVHGLAIKEGYVSIVFVANSIVGMYTKCNDLNGARQL 237

Query: 390 FSNMVSR-DLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGL 448
           F  M  + D+VSWNSM+  +S +G + E L++F  M ++   PN+ TF+  L AC  +  
Sbjct: 238 FDRMPEKEDVVSWNSMISAYSSNGQSIEALRLFGEMQKASLAPNTYTFVAALQACEDSSF 297

Query: 449 VSRGWELFNAMFDVYKIQPGPEHYV------SMINLLGRAGKIKEAEEFVLRLPFEPDHR 502
           + +G      MF ++       +Y+      ++I +  R GK+ EA      +  + D  
Sbjct: 298 IKQG------MF-IHATVLKSSYYINVFVANALIAMYARFGKMGEAANIFYNMD-DWDTI 349

Query: 503 IWGALLGACGFCEGNAEIAEHAAKRLLEL-DPLNAPAHVVLCNIYAASGR 551
            W ++L   GF +    +   A +   E+ D    P  V + +I AAS R
Sbjct: 350 SWNSMLS--GFVQNG--LYHEALQFYHEMRDAGQKPDLVAVISIIAASAR 395



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 49/206 (23%), Positives = 93/206 (45%), Gaps = 11/206 (5%)

Query: 310 NELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESE-SDLI 368
           NE F   T LF          L+  +S +    G+   +  G+Q+H  ++ + +  + + 
Sbjct: 57  NEAFQSLTDLFANQSPSQFS-LDEAYSSVLELCGSKKALSEGQQVHAHMITSNALFNSVF 115

Query: 369 LENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESG 428
           L   L+ MY KCG + +A  +F  M  + + +WN+M+  +  +G    +L+++  M  SG
Sbjct: 116 LSTRLVFMYGKCGCLVDAEKLFDGMPHKTIFTWNAMIGAYVTNGEPLGSLELYREMRVSG 175

Query: 429 THPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYV----SMINLLGRAGK 484
              ++ TF  IL AC   GL+      + A      I+ G    V    S++ +  +   
Sbjct: 176 IPLDACTFPCILKAC---GLLKD--RRYGAEVHGLAIKEGYVSIVFVANSIVGMYTKCND 230

Query: 485 IKEAEEFVLRLPFEPDHRIWGALLGA 510
           +  A +   R+P + D   W +++ A
Sbjct: 231 LNGARQLFDRMPEKEDVVSWNSMISA 256


>gi|195647336|gb|ACG43136.1| pentatricopeptide repeat protein PPR868-14 [Zea mays]
          Length = 788

 Score =  310 bits (795), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 203/667 (30%), Positives = 332/667 (49%), Gaps = 77/667 (11%)

Query: 8   KSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEE 67
           +S+  +L ++   +++    D+A          +  +Y+ M+S  ++ G ++ ARRLF  
Sbjct: 115 RSVASNLLTAYAAFTRAADRDQAFRDCVAADAASSFTYDFMVSEHVKAGDIASARRLFYG 174

Query: 68  MPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVF 127
           MPE++VVS+T M+  L   G V +A +L+E  P  +V  + +M+ G +RN    +A  VF
Sbjct: 175 MPEKSVVSYTTMVDALMKRGSVRDAVELYERCPLHSVAFFTAMISGFVRNELHKDAFPVF 234

Query: 128 NSMPI----KNVISWNAMI-----AGYVECCM---------------------------- 150
             M       NV++   +I     AG  +  M                            
Sbjct: 235 RKMLTCSVRPNVVTLICVIKACVGAGEFDLAMGVVGLAVKCNLFEKSIEVHNSLITLYLR 294

Query: 151 MGEAIV---LFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGF 207
           MG+A     +F++ME R+VV+WT+++  Y   G++     +   MP +N VSW  +I   
Sbjct: 295 MGDAAAAHRVFDDMEVRDVVSWTALLDVYADLGDLYGARRVLDAMPARNEVSWGTLIARH 354

Query: 208 AWNGFHKESLLLFIEM--KGICDN------------------------------GNNCNV 235
              G   E+L L+ +M   G   N                              G++ N+
Sbjct: 355 EQKGDTAEALKLYSQMLADGCRPNISCFSSVLSACATLQDLRGGTRIHANALKMGSSTNL 414

Query: 236 QSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDR 295
              +S+I+ Y +  +   AQ +F+++P ++ + W S+I GY   G++  A  LF+ MP R
Sbjct: 415 FVSSSLIDMYCKCKQCTYAQRVFNSLPEKNTVCWNSLISGYSWNGKMVEAEGLFNKMPAR 474

Query: 296 DAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIH 355
           ++V+W  MISG  +N  F +A   F  M A G  P   T S +  A     ++++GR +H
Sbjct: 475 NSVSWNTMISGYAENRRFGDALNYFYAMLASGHIPGEITLSSVLLACANLCSLEMGRMVH 534

Query: 356 CVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLAN 415
             ++K   E ++ +   L  MYAK G +D++  +F  M  ++ ++W +MV G + +G A 
Sbjct: 535 AEIVKLGIEDNIFMGTALSDMYAKSGDLDSSRRVFYQMPEKNNITWTAMVQGLAENGFAE 594

Query: 416 ETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSM 475
           E++ +FE M+E+G  PN  TFL IL ACSH GLV +    F  M   + I P  +HY  M
Sbjct: 595 ESISLFEDMIENGIAPNEHTFLAILFACSHCGLVEQAIHYFETM-QAHGIPPKSKHYTCM 653

Query: 476 INLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLN 535
           +++L RAG + EAEE ++++  E D   W +LL AC     N EI E AAK+L EL+  N
Sbjct: 654 VDVLARAGCLPEAEELLMKVSSELDTSSWSSLLSACSTYR-NKEIGERAAKKLHELEKDN 712

Query: 536 APAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLS-GDKIP-- 592
              +V+L N+YA+ G+  +  + R+ M    ++K  GCSWL   G    F S  +K P  
Sbjct: 713 TAGYVLLSNMYASCGKWKDAAETRILMQGASLKKDAGCSWLQLRGQYHAFFSWKEKHPLS 772

Query: 593 AQVAEIL 599
            ++ EIL
Sbjct: 773 LEIYEIL 779


>gi|297604953|ref|NP_001056393.2| Os05g0574800 [Oryza sativa Japonica Group]
 gi|255676596|dbj|BAF18307.2| Os05g0574800 [Oryza sativa Japonica Group]
          Length = 857

 Score =  310 bits (793), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 202/635 (31%), Positives = 309/635 (48%), Gaps = 87/635 (13%)

Query: 46  NAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEM------ 99
           NAMLS  ++ G +  A R+F +MPER+V SW  M+ G    G + EA  L+  M      
Sbjct: 135 NAMLSMLVRFGEIWHAWRVFAKMPERDVFSWNVMVGGYGKVGFLEEALDLYYRMLWAGMR 194

Query: 100 PE-----------RNVVSW----------------------NSMVVGLIRNGELNEARKV 126
           P+             +  W                      N++V    + G++  ARKV
Sbjct: 195 PDVYTFPCVLRTCGGIPDWRMGREVHAHVLRFGFGDEVDVLNALVTMYAKCGDIVAARKV 254

Query: 127 FNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEER----NVVTWTS----------- 171
           F+ M + + ISWNAMIAG+ E       + LF  M E     N++T TS           
Sbjct: 255 FDGMAVTDCISWNAMIAGHFENHECEAGLELFLTMLENEVQPNLMTITSVTVASGMLSEV 314

Query: 172 ------------------------MISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGF 207
                                   +I  Y   G + +   +F RM  K+ +SWTAMI G+
Sbjct: 315 GFAKEMHGFAVKRGFAIDVAFCNSLIQMYTSLGRMGDAGKIFSRMETKDAMSWTAMISGY 374

Query: 208 AWNGFHKESLLLF--IEMKGICDNGNNCNVQSCNSMINGYIRFG-RLEE-AQNLFDTVPV 263
             NGF  ++L ++  +E+  +  +              G +  G +L E AQN      +
Sbjct: 375 EKNGFPDKALEVYALMELHNVSPDDVTIASALAACACLGRLDVGIKLHELAQN---KGFI 431

Query: 264 RDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEM 323
           R  +   ++++ Y     +  A  +F  M ++D V+W++MI+G   N    EA Y F  M
Sbjct: 432 RYVVVANALLEMYAKSKHIDKAIEVFKFMAEKDVVSWSSMIAGFCFNHRSFEALYYFRYM 491

Query: 324 RAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVI 383
             H V P + TF     A  AT  +  G++IH  +++    S+  + N L+ +Y KCG  
Sbjct: 492 LGH-VKPNSVTFIAALSACAATGALRSGKEIHAYVLRCGIGSEGYVPNALLDLYVKCGQT 550

Query: 384 DNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSAC 443
             A+  FS    +D+VSWN M+ GF  HGL +  L +F  M+E G HP+ VTF+ +L AC
Sbjct: 551 SYAWAQFSVHSEKDVVSWNIMLSGFVAHGLGDIALSLFNQMVEMGEHPDEVTFVALLCAC 610

Query: 444 SHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRI 503
           S AG+V +GWELF+ M + + I P  +HY  M++LL R GK+ EA   + R+P +PD  +
Sbjct: 611 SRAGMVIQGWELFHMMTEKFSIVPNLKHYACMVDLLSRVGKLTEAYNLINRMPIKPDAAV 670

Query: 504 WGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMG 563
           WGALL  C     + E+ E AAK +LEL+P +   HV+LC++Y  +G+  +  ++R  M 
Sbjct: 671 WGALLNGCRI-HRHVELGELAAKVILELEPNDVAYHVLLCDLYTDAGKWAQVARVRKTMR 729

Query: 564 LKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
            KG+ +  GCSW+   G    FL+ D+   Q+ EI
Sbjct: 730 EKGLEQDNGCSWVEVKGVTHAFLTDDESHPQIKEI 764



 Score =  145 bits (365), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 134/530 (25%), Positives = 215/530 (40%), Gaps = 131/530 (24%)

Query: 46  NAMLSGFLQNGRLSEARRLFEEMPER-NVVSWTAMICGLADAGRVCEARKLFE------- 97
           +A L     +G+L++A  L E  PE  +  ++ A+        R+CE R+  +       
Sbjct: 68  SAALRALCSHGQLAQALWLLESSPEPPDEGAYVALF-------RLCEWRRAVDAGMRACA 120

Query: 98  ----EMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGE 153
               E P   +   N+M+  L+R GE+  A +VF  MP ++V SWN M+ GY +   + E
Sbjct: 121 RADAEHPSFGLRLGNAMLSMLVRFGEIWHAWRVFAKMPERDVFSWNVMVGGYGKVGFLEE 180

Query: 154 AIVLFEEM-----------------------------------------EERNVVTWTSM 172
           A+ L+  M                                         +E +V+   ++
Sbjct: 181 ALDLYYRMLWAGMRPDVYTFPCVLRTCGGIPDWRMGREVHAHVLRFGFGDEVDVL--NAL 238

Query: 173 ISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFI----------- 221
           ++ Y + G++     +F  M   + +SW AMI G   N   +  L LF+           
Sbjct: 239 VTMYAKCGDIVAARKVFDGMAVTDCISWNAMIAGHFENHECEAGLELFLTMLENEVQPNL 298

Query: 222 --------------------EMKGIC-DNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDT 260
                               EM G     G   +V  CNS+I  Y   GR+ +A  +F  
Sbjct: 299 MTITSVTVASGMLSEVGFAKEMHGFAVKRGFAIDVAFCNSLIQMYTSLGRMGDAGKIFSR 358

Query: 261 VPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLF 320
           +  +D +SWT+MI GY   G            PD+                    A  ++
Sbjct: 359 METKDAMSWTAMISGYEKNG-----------FPDK--------------------ALEVY 387

Query: 321 MEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKC 380
             M  H V P + T +    A      +D+G ++H +         +++ N L+ MYAK 
Sbjct: 388 ALMELHNVSPDDVTIASALAACACLGRLDVGIKLHELAQNKGFIRYVVVANALLEMYAKS 447

Query: 381 GVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGIL 440
             ID A  +F  M  +D+VSW+SM+ GF  +  + E L  F  ML     PNSVTF+  L
Sbjct: 448 KHIDKAIEVFKFMAEKDVVSWSSMIAGFCFNHRSFEALYYFRYML-GHVKPNSVTFIAAL 506

Query: 441 SACSHAGLVSRGWELFNAMFDVYKIQPGPEHYV--SMINLLGRAGKIKEA 488
           SAC+  G +  G E+      V +   G E YV  ++++L  + G+   A
Sbjct: 507 SACAATGALRSGKEIHAY---VLRCGIGSEGYVPNALLDLYVKCGQTSYA 553



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 108/448 (24%), Positives = 195/448 (43%), Gaps = 51/448 (11%)

Query: 14  LTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPER-- 71
           L + +T Y+K G I  A+ +F  M   + +S+NAM++G  +N        LF  M E   
Sbjct: 235 LNALVTMYAKCGDIVAARKVFDGMAVTDCISWNAMIAGHFENHECEAGLELFLTMLENEV 294

Query: 72  --NVVSWTAMICGLADAGRVCEARKLFEEMPER----NVVSWNSMVVGLIRNGELNEARK 125
             N+++ T++         V  A+++     +R    +V   NS++      G + +A K
Sbjct: 295 QPNLMTITSVTVASGMLSEVGFAKEMHGFAVKRGFAIDVAFCNSLIQMYTSLGRMGDAGK 354

Query: 126 VFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERN-------------------- 165
           +F+ M  K+ +SW AMI+GY +     +A+ ++  ME  N                    
Sbjct: 355 IFSRMETKDAMSWTAMISGYEKNGFPDKALEVYALMELHNVSPDDVTIASALAACACLGR 414

Query: 166 -------------------VVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGG 206
                              VV   +++  Y ++  +++   +F+ M  K+VVSW++MI G
Sbjct: 415 LDVGIKLHELAQNKGFIRYVVVANALLEMYAKSKHIDKAIEVFKFMAEKDVVSWSSMIAG 474

Query: 207 FAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNS-MINGYIRFGRLEEAQNLFDTVPVRD 265
           F +N    E+L  F  M G     +   + + ++    G +R G+   A  L   +    
Sbjct: 475 FCFNHRSFEALYYFRYMLGHVKPNSVTFIAALSACAATGALRSGKEIHAYVLRCGIGSEG 534

Query: 266 EISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRA 325
            +   +++D Y+  GQ S A+  F    ++D V+W  M+SG V + L   A  LF +M  
Sbjct: 535 YVP-NALLDLYVKCGQTSYAWAQFSVHSEKDVVSWNIMLSGFVAHGLGDIALSLFNQMVE 593

Query: 326 HGVPPLNATFSVLFGAAGATANIDLGRQI-HCVLMKTESESDLILENCLISMYAKCGVID 384
            G  P   TF  L  A      +  G ++ H +  K     +L    C++ + ++ G + 
Sbjct: 594 MGEHPDEVTFVALLCACSRAGMVIQGWELFHMMTEKFSIVPNLKHYACMVDLLSRVGKLT 653

Query: 385 NAYNIFSNM-VSRDLVSWNSMVMGFSHH 411
            AYN+ + M +  D   W +++ G   H
Sbjct: 654 EAYNLINRMPIKPDAAVWGALLNGCRIH 681



 Score = 88.6 bits (218), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 88/350 (25%), Positives = 151/350 (43%), Gaps = 59/350 (16%)

Query: 11  VVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPE 70
           V    S I  Y+  G + +A  +F  M  ++ +S+ AM+SG+ +NG   +A  ++  M  
Sbjct: 333 VAFCNSLIQMYTSLGRMGDAGKIFSRMETKDAMSWTAMISGYEKNGFPDKALEVYALMEL 392

Query: 71  RNV----VSWTAMICGLADAGRVCEARKLFEEMPE----RNVVSWNSMVVGLIRNGELNE 122
            NV    V+  + +   A  GR+    KL E        R VV  N+++    ++  +++
Sbjct: 393 HNVSPDDVTIASALAACACLGRLDVGIKLHELAQNKGFIRYVVVANALLEMYAKSKHIDK 452

Query: 123 ARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEM---EERNVVTWTSMISG---- 175
           A +VF  M  K+V+SW++MIAG+       EA+  F  M    + N VT+ + +S     
Sbjct: 453 AIEVFKFMAEKDVVSWSSMIAGFCFNHRSFEALYYFRYMLGHVKPNSVTFIAALSACAAT 512

Query: 176 -------------------------------YCRAGEVEEGYCLFRRMPRKNVVSWTAMI 204
                                          Y + G+    +  F     K+VVSW  M+
Sbjct: 513 GALRSGKEIHAYVLRCGIGSEGYVPNALLDLYVKCGQTSYAWAQFSVHSEKDVVSWNIML 572

Query: 205 GGFAWNGFHKESLLLFIEMKGICDNGNN-------CNVQSCNSMINGYIRFGRLEEAQNL 257
            GF  +G    +L LF +M  + ++ +        C       +I G+  F  + E    
Sbjct: 573 SGFVAHGLGDIALSLFNQMVEMGEHPDEVTFVALLCACSRAGMVIQGWELFHMMTEK--- 629

Query: 258 FDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDR-DAVAWTAMISG 306
           F  VP  +   +  M+D    VG+++ AY L + MP + DA  W A+++G
Sbjct: 630 FSIVP--NLKHYACMVDLLSRVGKLTEAYNLINRMPIKPDAAVWGALLNG 677


>gi|449523810|ref|XP_004168916.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At2g01510-like [Cucumis
           sativus]
          Length = 816

 Score =  310 bits (793), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 197/663 (29%), Positives = 320/663 (48%), Gaps = 83/663 (12%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWT 77
           +  + +RG +  A  +F  MP +N +S N M+SG L+ G+LS+AR LF+ M ER  VSWT
Sbjct: 50  VNNFLERGDLVHAHQVFDQMPAKNTISLNMMISGHLKFGKLSKARELFDGMVERTAVSWT 109

Query: 78  AMICGLADAGRVCEARKLFEEMP------------------------------------- 100
            +I G   + +  EA +L+ +M                                      
Sbjct: 110 ILIGGYLQSNQSKEAFRLYADMRRGGIEPDYVTLVTLLSGFGELETKNVIVQIHTHVIKL 169

Query: 101 --ERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLF 158
             E N++  NS+V    +   L  A ++F  M  K+ +++N+++ GY    +  EAI LF
Sbjct: 170 GYEYNLMVCNSLVDAYCKTHCLYLASQLFKHMLNKDTVTFNSLMTGYSNEGLNEEAIELF 229

Query: 159 EEMEER---------------------------------------NVVTWTSMISGYCRA 179
            E+                                          NV    +++  Y + 
Sbjct: 230 LELHNSGIKPSDFTFAALLSAAVGLDDTKFGQQVHGFVLKTNFVWNVFVGNALLDYYSKH 289

Query: 180 GEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCN 239
            +V+E   LF  MP  + +S+  +I  +AWNG  KES  LF +++    +       +  
Sbjct: 290 DQVDEVGKLFXEMPELDGISYNVVITSYAWNGQFKESFDLFRKLQFTRFDRRQFPFATLL 349

Query: 240 SMINGYI--RFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDA 297
           S+    +  R GR    Q +         +   +++D Y        A  +F N+  +  
Sbjct: 350 SIATSSLNLRMGRQIHCQAITVGANFESRVE-NALVDMYAKCNGDKEAQKIFDNIACKST 408

Query: 298 VAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCV 357
           V WTAMIS  VQ     E   +F +MR  GVP   ATF+ +  A    A+I LGRQ+H +
Sbjct: 409 VPWTAMISAYVQKGKHEEGINVFSDMRRTGVPADQATFASILRACANLASISLGRQLHSL 468

Query: 358 LMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANET 417
           L+++   S++   + L+  YAKCG + +A   F  M  R+ VSWN+++  ++ +G  + T
Sbjct: 469 LIRSGFMSNVYSGSALLDTYAKCGCMTDAIKSFGEMPERNSVSWNALISAYAQNGNVDGT 528

Query: 418 LKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMIN 477
           L  F+ M++SG  P+SV+FL +LSACSH G V      FN+M  +Y++ P  EHY SM++
Sbjct: 529 LNSFQQMIQSGYKPDSVSFLSVLSACSHCGFVEEALWHFNSMTQIYEVTPKREHYTSMVD 588

Query: 478 LLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPL-NA 536
           +L R G+  EAE+ +  +PFEP   +W ++L +C     N E+A+ AA RL  ++ L +A
Sbjct: 589 VLCRNGRFDEAEKLMTEMPFEPSEIMWSSVLNSCRI-HKNHELAKKAADRLFNMEDLRDA 647

Query: 537 PAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVA 596
             ++ + NIYA +G+     K++  M  +GVRKVP  SW+       +F + DK   ++ 
Sbjct: 648 APYINMSNIYAVAGQWDNVAKVKKAMRDRGVRKVPAYSWVEIKHQTHVFSANDKSHPEMK 707

Query: 597 EIL 599
           +IL
Sbjct: 708 KIL 710



 Score =  175 bits (443), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 130/570 (22%), Positives = 260/570 (45%), Gaps = 53/570 (9%)

Query: 41  NVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMP 100
           N    N  ++ FL+ G L  A ++F++MP +N +S   MI G    G++ +AR+LF+ M 
Sbjct: 42  NTCRSNFQVNNFLERGDLVHAHQVFDQMPAKNTISLNMMISGHLKFGKLSKARELFDGMV 101

Query: 101 ERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNV----ISWNAMIAGYVECCMMGEAIV 156
           ER  VSW  ++ G +++ +  EA +++  M    +    ++   +++G+ E       + 
Sbjct: 102 ERTAVSWTILIGGYLQSNQSKEAFRLYADMRRGGIEPDYVTLVTLLSGFGELETKNVIVQ 161

Query: 157 LFEEM----EERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGF 212
           +   +     E N++   S++  YC+   +     LF+ M  K+ V++ +++ G++  G 
Sbjct: 162 IHTHVIKLGYEYNLMVCNSLVDAYCKTHCLYLASQLFKHMLNKDTVTFNSLMTGYSNEGL 221

Query: 213 HKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISW--- 269
           ++E++ LF+E+    ++G   +  +  ++++  +     +  Q +   V ++    W   
Sbjct: 222 NEEAIELFLELH---NSGIKPSDFTFAALLSAAVGLDDTKFGQQVHGFV-LKTNFVWNVF 277

Query: 270 --TSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHG 327
              +++D Y    QV     LF  MP+ D +++  +I+    N  F E+  LF +++   
Sbjct: 278 VGNALLDYYSKHDQVDEVGKLFXEMPELDGISYNVVITSYAWNGQFKESFDLFRKLQFTR 337

Query: 328 VPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAY 387
                  F+ L   A ++ N+ +GRQIHC  +   +  +  +EN L+ MYAKC     A 
Sbjct: 338 FDRRQFPFATLLSIATSSLNLRMGRQIHCQAITVGANFESRVENALVDMYAKCNGDKEAQ 397

Query: 388 NIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAG 447
            IF N+  +  V W +M+  +   G   E + VF  M  +G   +  TF  IL AC++  
Sbjct: 398 KIFDNIACKSTVPWTAMISAYVQKGKHEEGINVFSDMRRTGVPADQATFASILRACANLA 457

Query: 448 LVSRGWELF---------------NAMFDVY-----------KIQPGPEH----YVSMIN 477
            +S G +L                +A+ D Y                PE     + ++I+
Sbjct: 458 SISLGRQLHSLLIRSGFMSNVYSGSALLDTYAKCGCMTDAIKSFGEMPERNSVSWNALIS 517

Query: 478 LLGRAGKIK---EAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEH--AAKRLLELD 532
              + G +     + + +++  ++PD   + ++L AC  C    E   H  +  ++ E+ 
Sbjct: 518 AYAQNGNVDGTLNSFQQMIQSGYKPDSVSFLSVLSACSHCGFVEEALWHFNSMTQIYEVT 577

Query: 533 PLNAPAHVVLCNIYAASGRHVEEHKLRMDM 562
           P     +  + ++   +GR  E  KL  +M
Sbjct: 578 P-KREHYTSMVDVLCRNGRFDEAEKLMTEM 606



 Score =  131 bits (330), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 73/217 (33%), Positives = 117/217 (53%)

Query: 226 ICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNA 285
           I   G N N    N  +N ++  G L  A  +FD +P ++ IS   MI G+L  G++S A
Sbjct: 34  IVKTGFNPNTCRSNFQVNNFLERGDLVHAHQVFDQMPAKNTISLNMMISGHLKFGKLSKA 93

Query: 286 YYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGAT 345
             LF  M +R AV+WT +I G +Q+    EA  L+ +MR  G+ P   T   L    G  
Sbjct: 94  RELFDGMVERTAVSWTILIGGYLQSNQSKEAFRLYADMRRGGIEPDYVTLVTLLSGFGEL 153

Query: 346 ANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMV 405
              ++  QIH  ++K   E +L++ N L+  Y K   +  A  +F +M+++D V++NS++
Sbjct: 154 ETKNVIVQIHTHVIKLGYEYNLMVCNSLVDAYCKTHCLYLASQLFKHMLNKDTVTFNSLM 213

Query: 406 MGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSA 442
            G+S+ GL  E +++F  +  SG  P+  TF  +LSA
Sbjct: 214 TGYSNEGLNEEAIELFLELHNSGIKPSDFTFAALLSA 250


>gi|449443642|ref|XP_004139586.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Cucumis sativus]
 gi|449492832|ref|XP_004159115.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Cucumis sativus]
          Length = 663

 Score =  310 bits (793), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 185/592 (31%), Positives = 315/592 (53%), Gaps = 10/592 (1%)

Query: 16  SSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVS 75
           S I  Y K   I  A+ +F  + + ++ S+N M+ G+ +   +  A   F +MPER+ VS
Sbjct: 33  SIIDMYIKCDAIYAAEQVFLRIEKPSLFSWNCMIYGYSKLHEMGRAIDTFRQMPERDSVS 92

Query: 76  WTAMICGLADAGRVCEARKLFEEM----PERNVVSWNSMVVGLIRNGELNEAR----KVF 127
           W  +I   +  G   ++   F EM     + N +++ S++       +    +    ++ 
Sbjct: 93  WNTIISAFSHHGLHIQSLGTFVEMWIQGCQPNSMTYASVLSACANIYDFQWGKHLHARIV 152

Query: 128 NSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYC 187
              P  +V+  N ++  Y +C ++  +  +F  + E NVVTWTS+ISG    G  EE Y 
Sbjct: 153 RVEPFLDVLVGNGLVDMYAKCGLIDASKRVFNTLREHNVVTWTSLISGIAHFGSQEEVYD 212

Query: 188 LFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGIC-DNGNNCNVQSCNSMINGYI 246
           +F +M +  V+    ++         + ++ +  ++ G     G N +V   N+ ++ Y 
Sbjct: 213 IFYQMRKDCVIMDNFILATILGVCEGETNISIGEQLHGFTVKTGMNSSVPVGNATLSMYA 272

Query: 247 RFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISG 306
           + G  E+A   F+T+   D ISWT+MI  +   G V  A   F+ MP+R+ ++W AM+  
Sbjct: 273 KCGDFEKASLAFETMAAHDVISWTTMITSFSHSGNVERARDYFNRMPERNVISWNAMLGA 332

Query: 307 LVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESD 366
             QN  + E   L++ M    V P   TF  + GA    A   LG QI    +K    SD
Sbjct: 333 YCQNSFWEEGLKLYILMLRQEVRPDWITFVTMIGACSELAISKLGTQILSQAVKVGLGSD 392

Query: 367 LILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLE 426
           + + N  I++Y++CG I+ A N+F ++  ++L+SWNS++ G++ +G   + +++F++ML 
Sbjct: 393 VSVVNSAITLYSRCGRIEEAQNLFDSIQEKNLISWNSIMGGYAQNGEGMKVIEIFQNMLM 452

Query: 427 SGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIK 486
           +G  P+ +T++ ILS CSH+GLV      FN+M   + I    EH+V M++L GRAG +K
Sbjct: 453 AGCKPDHITYIAILSGCSHSGLVKEAKYHFNSMTKDFGISVTLEHFVCMVDLFGRAGLLK 512

Query: 487 EAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIY 546
            A + + ++PF+P+  IWGALL AC     + E+AE A K LLEL+  N  ++++L N Y
Sbjct: 513 LALDMIDQMPFKPNASIWGALLSACRI-HHDTEMAELAMKNLLELNTENFESYILLANTY 571

Query: 547 AASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
           ++ GR     ++R  M  K V+K PGCSW+     + +F + D    QV +I
Sbjct: 572 SSFGRLECVSEVRQVMKEKRVQKDPGCSWIEVCNRVHVFTANDTSHPQVKDI 623



 Score = 88.6 bits (218), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 75/291 (25%), Positives = 135/291 (46%), Gaps = 53/291 (18%)

Query: 11  VVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPE 70
           V+  T+ IT +S  G ++ A+  F  MP+RNV+S+NAML  + QN    E  +L+  M  
Sbjct: 292 VISWTTMITSFSHSGNVERARDYFNRMPERNVISWNAMLGAYCQNSFWEEGLKLYILMLR 351

Query: 71  RNV----VSWTAMICGLAD-----------------------------------AGRVCE 91
           + V    +++  MI   ++                                    GR+ E
Sbjct: 352 QEVRPDWITFVTMIGACSELAISKLGTQILSQAVKVGLGSDVSVVNSAITLYSRCGRIEE 411

Query: 92  ARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIK----NVISWNAMIAGYVE 147
           A+ LF+ + E+N++SWNS++ G  +NGE  +  ++F +M +     + I++ A+++G   
Sbjct: 412 AQNLFDSIQEKNLISWNSIMGGYAQNGEGMKVIEIFQNMLMAGCKPDHITYIAILSGCSH 471

Query: 148 CCMMGEAIVLFEEMEERNVVTWT-----SMISGYCRAGEVEEGYCLFRRMPRK-NVVSWT 201
             ++ EA   F  M +   ++ T      M+  + RAG ++    +  +MP K N   W 
Sbjct: 472 SGLVKEAKYHFNSMTKDFGISVTLEHFVCMVDLFGRAGLLKLALDMIDQMPFKPNASIWG 531

Query: 202 AMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLE 252
           A++        H ++ +  + MK + +  N  N +S   + N Y  FGRLE
Sbjct: 532 ALLSACR---IHHDTEMAELAMKNLLE-LNTENFESYILLANTYSSFGRLE 578



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 38/136 (27%), Positives = 58/136 (42%), Gaps = 31/136 (22%)

Query: 341 AAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVS 400
           A  +   I +  Q+H +  K    ++ +++N +I MY KC  I  A  +F  +    L S
Sbjct: 2   ACSSVGYIRIAHQLHGLSEKYGFGNNKVIQNSIIDMYIKCDAIYAAEQVFLRIEKPSLFS 61

Query: 401 WNSMVMG-------------------------------FSHHGLANETLKVFESMLESGT 429
           WN M+ G                               FSHHGL  ++L  F  M   G 
Sbjct: 62  WNCMIYGYSKLHEMGRAIDTFRQMPERDSVSWNTIISAFSHHGLHIQSLGTFVEMWIQGC 121

Query: 430 HPNSVTFLGILSACSH 445
            PNS+T+  +LSAC++
Sbjct: 122 QPNSMTYASVLSACAN 137


>gi|449460574|ref|XP_004148020.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like [Cucumis sativus]
          Length = 816

 Score =  310 bits (793), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 197/663 (29%), Positives = 320/663 (48%), Gaps = 83/663 (12%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWT 77
           +  + +RG +  A  +F  MP +N +S N M+SG L+ G+LS+AR LF+ M ER  VSWT
Sbjct: 50  VNNFLERGDLVHAHQVFDQMPAKNTISLNMMISGHLKFGKLSKARELFDGMVERTAVSWT 109

Query: 78  AMICGLADAGRVCEARKLFEEMP------------------------------------- 100
            +I G   + +  EA +L+ +M                                      
Sbjct: 110 ILIGGYLQSNQSKEAFRLYADMRRGGIEPDYVTLVTLLSGFGELETKNVIVQIHTHVIKL 169

Query: 101 --ERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLF 158
             E N++  NS+V    +   L  A ++F  M  K+ +++N+++ GY    +  EAI LF
Sbjct: 170 GYEYNLMVCNSLVDAYCKTHCLYLASQLFKHMLNKDTVTFNSLMTGYSNEGLNEEAIELF 229

Query: 159 EEMEER---------------------------------------NVVTWTSMISGYCRA 179
            E+                                          NV    +++  Y + 
Sbjct: 230 LELHNSGIKPSDFTFAALLSAAVGLDDTKFGQQVHGFVLKTNFVWNVFVGNALLDYYSKH 289

Query: 180 GEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCN 239
            +V+E   LF  MP  + +S+  +I  +AWNG  KES  LF +++    +       +  
Sbjct: 290 DQVDEVGKLFYEMPELDGISYNVVITSYAWNGQFKESFDLFRKLQFTRFDRRQFPFATLL 349

Query: 240 SMINGYI--RFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDA 297
           S+    +  R GR    Q +         +   +++D Y        A  +F N+  +  
Sbjct: 350 SIATSSLNLRMGRQIHCQAITVGANFESRVE-NALVDMYAKCNGDKEAQKIFDNIACKST 408

Query: 298 VAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCV 357
           V WTAMIS  VQ     E   +F +MR  GVP   ATF+ +  A    A+I LGRQ+H +
Sbjct: 409 VPWTAMISAYVQKGKHEEGINVFSDMRRTGVPADQATFASILRACANLASISLGRQLHSL 468

Query: 358 LMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANET 417
           L+++   S++   + L+  YAKCG + +A   F  M  R+ VSWN+++  ++ +G  + T
Sbjct: 469 LIRSGFMSNVYSGSALLDTYAKCGCMTDAIKSFGEMPERNSVSWNALISAYAQNGNVDGT 528

Query: 418 LKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMIN 477
           L  F+ M++SG  P+SV+FL +LSACSH G V      FN+M  +Y++ P  EHY SM++
Sbjct: 529 LNSFQQMIQSGYKPDSVSFLSVLSACSHCGFVEEALWHFNSMTQIYEVTPKREHYTSMVD 588

Query: 478 LLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPL-NA 536
           +L R G+  EAE+ +  +PFEP   +W ++L +C     N E+A+ AA RL  ++ L +A
Sbjct: 589 VLCRNGRFDEAEKLMTEMPFEPSEIMWSSVLNSCRI-HKNHELAKKAADRLFNMEDLRDA 647

Query: 537 PAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVA 596
             ++ + NIYA +G+     K++  M  +GVRKVP  SW+       +F + DK   ++ 
Sbjct: 648 APYINMSNIYAVAGQWDNVAKVKKAMRDRGVRKVPAYSWVEIKHQTHVFSANDKSHPEMK 707

Query: 597 EIL 599
           +IL
Sbjct: 708 KIL 710



 Score =  176 bits (447), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 130/570 (22%), Positives = 261/570 (45%), Gaps = 53/570 (9%)

Query: 41  NVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMP 100
           N    N  ++ FL+ G L  A ++F++MP +N +S   MI G    G++ +AR+LF+ M 
Sbjct: 42  NTCRSNFQVNNFLERGDLVHAHQVFDQMPAKNTISLNMMISGHLKFGKLSKARELFDGMV 101

Query: 101 ERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNV----ISWNAMIAGYVECCMMGEAIV 156
           ER  VSW  ++ G +++ +  EA +++  M    +    ++   +++G+ E       + 
Sbjct: 102 ERTAVSWTILIGGYLQSNQSKEAFRLYADMRRGGIEPDYVTLVTLLSGFGELETKNVIVQ 161

Query: 157 LFEEM----EERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGF 212
           +   +     E N++   S++  YC+   +     LF+ M  K+ V++ +++ G++  G 
Sbjct: 162 IHTHVIKLGYEYNLMVCNSLVDAYCKTHCLYLASQLFKHMLNKDTVTFNSLMTGYSNEGL 221

Query: 213 HKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISW--- 269
           ++E++ LF+E+    ++G   +  +  ++++  +     +  Q +   V ++    W   
Sbjct: 222 NEEAIELFLELH---NSGIKPSDFTFAALLSAAVGLDDTKFGQQVHGFV-LKTNFVWNVF 277

Query: 270 --TSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHG 327
              +++D Y    QV     LF+ MP+ D +++  +I+    N  F E+  LF +++   
Sbjct: 278 VGNALLDYYSKHDQVDEVGKLFYEMPELDGISYNVVITSYAWNGQFKESFDLFRKLQFTR 337

Query: 328 VPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAY 387
                  F+ L   A ++ N+ +GRQIHC  +   +  +  +EN L+ MYAKC     A 
Sbjct: 338 FDRRQFPFATLLSIATSSLNLRMGRQIHCQAITVGANFESRVENALVDMYAKCNGDKEAQ 397

Query: 388 NIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAG 447
            IF N+  +  V W +M+  +   G   E + VF  M  +G   +  TF  IL AC++  
Sbjct: 398 KIFDNIACKSTVPWTAMISAYVQKGKHEEGINVFSDMRRTGVPADQATFASILRACANLA 457

Query: 448 LVSRGWELF---------------NAMFDVY-----------KIQPGPEH----YVSMIN 477
            +S G +L                +A+ D Y                PE     + ++I+
Sbjct: 458 SISLGRQLHSLLIRSGFMSNVYSGSALLDTYAKCGCMTDAIKSFGEMPERNSVSWNALIS 517

Query: 478 LLGRAGKIK---EAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEH--AAKRLLELD 532
              + G +     + + +++  ++PD   + ++L AC  C    E   H  +  ++ E+ 
Sbjct: 518 AYAQNGNVDGTLNSFQQMIQSGYKPDSVSFLSVLSACSHCGFVEEALWHFNSMTQIYEVT 577

Query: 533 PLNAPAHVVLCNIYAASGRHVEEHKLRMDM 562
           P     +  + ++   +GR  E  KL  +M
Sbjct: 578 P-KREHYTSMVDVLCRNGRFDEAEKLMTEM 606



 Score =  131 bits (330), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 73/217 (33%), Positives = 117/217 (53%)

Query: 226 ICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNA 285
           I   G N N    N  +N ++  G L  A  +FD +P ++ IS   MI G+L  G++S A
Sbjct: 34  IVKTGFNPNTCRSNFQVNNFLERGDLVHAHQVFDQMPAKNTISLNMMISGHLKFGKLSKA 93

Query: 286 YYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGAT 345
             LF  M +R AV+WT +I G +Q+    EA  L+ +MR  G+ P   T   L    G  
Sbjct: 94  RELFDGMVERTAVSWTILIGGYLQSNQSKEAFRLYADMRRGGIEPDYVTLVTLLSGFGEL 153

Query: 346 ANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMV 405
              ++  QIH  ++K   E +L++ N L+  Y K   +  A  +F +M+++D V++NS++
Sbjct: 154 ETKNVIVQIHTHVIKLGYEYNLMVCNSLVDAYCKTHCLYLASQLFKHMLNKDTVTFNSLM 213

Query: 406 MGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSA 442
            G+S+ GL  E +++F  +  SG  P+  TF  +LSA
Sbjct: 214 TGYSNEGLNEEAIELFLELHNSGIKPSDFTFAALLSA 250


>gi|357468161|ref|XP_003604365.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355505420|gb|AES86562.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 874

 Score =  309 bits (792), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 180/571 (31%), Positives = 300/571 (52%), Gaps = 40/571 (7%)

Query: 54  QNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNV----VSWNS 109
           ++G +  AR++F+E+P+ +V  W  MI G +          L++ M   N+     ++  
Sbjct: 81  ESGDVYYARKVFDEIPQPSVFIWNTMIKGYSRINCSESGVSLYKLMLVHNIKPDGFTFPF 140

Query: 110 MVVGLIRNGELNEARKVFNSMPIKNVISWNAMI-AGYVE----CCMMGEAIVLFEEMEER 164
           ++ G  ++  L   + + N   I   +  N  +  G++     C ++  A  +F+  +  
Sbjct: 141 LLKGFTKDMALKYGKVLLNHAVIHGFLDSNLFVQKGFIHLFSLCGLVNYARKIFDMGDGW 200

Query: 165 NVVTWTSMISGYCRAGEVEEGYCLFRRMPRK------NVVSWTAMI-----------GGF 207
            VVTW  ++SGY R    EE   LF  M +K      N V+   M+           G  
Sbjct: 201 EVVTWNVVLSGYNRFKRYEESKRLFIEMEKKCECVSPNSVTLVLMLSACSKLKDLVGGKC 260

Query: 208 AWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEI 267
            +N + KE ++               N+   N++I+ +   G ++ A+ +FD +  RD I
Sbjct: 261 IYNKYIKEGIV-------------EPNLILENALIDMFASCGEMDAARGVFDEMKTRDVI 307

Query: 268 SWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHG 327
           SWTS++ G+ +  ++  A   F  MP+RD V+WTAMI G ++   F E   LF +M+   
Sbjct: 308 SWTSIVTGFANTCRIDLARKYFDQMPERDYVSWTAMIDGYLRMNRFKEVLTLFRDMQMSN 367

Query: 328 VPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAY 387
           V P   T   +  A      ++LG      + K + ++D  + N LI MY KCG ++ A 
Sbjct: 368 VKPDEFTMVSILTACAHLGALELGEWAKTYIDKNKIKNDTFIGNALIDMYFKCGNVEKAK 427

Query: 388 NIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAG 447
            IF+ M  +D  +W +M++G +++G   E L +F  MLE+   P+ +T++G++ AC+H G
Sbjct: 428 KIFNEMQKKDKFTWTAMIVGLANNGHGEEALTMFSYMLEASVTPDEITYIGVMCACTHVG 487

Query: 448 LVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGAL 507
           LV++G   F+ M   + I+P   HY  M++LLGRAG +KEA E ++ +P +P+  +WG+L
Sbjct: 488 LVAKGKHFFSNMAVQHGIKPNLTHYGCMVDLLGRAGHLKEALEVIMNMPVKPNSIVWGSL 547

Query: 508 LGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGV 567
           LGAC     N ++AE AA  +LEL+P N   +V+LCNIYAA  +    H +R  M  +G+
Sbjct: 548 LGACR-VHKNVQLAEMAANEILELEPENGAVYVLLCNIYAACKKWKNLHNVRKMMMERGI 606

Query: 568 RKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
           +K+PGCS +  NG +  F++GDK   Q  EI
Sbjct: 607 KKIPGCSLMEMNGIVYEFVAGDKSHPQSKEI 637



 Score =  128 bits (322), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 88/327 (26%), Positives = 157/327 (48%), Gaps = 17/327 (5%)

Query: 21  YSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPER------NVV 74
           +S  G ++ A+ +F +     VV++N +LSG+ +  R  E++RLF EM ++      N V
Sbjct: 181 FSLCGLVNYARKIFDMGDGWEVVTWNVVLSGYNRFKRYEESKRLFIEMEKKCECVSPNSV 240

Query: 75  SWTAMICGLAD-----AGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNS 129
           +   M+   +       G+    + + E + E N++  N+++      GE++ AR VF+ 
Sbjct: 241 TLVLMLSACSKLKDLVGGKCIYNKYIKEGIVEPNLILENALIDMFASCGEMDAARGVFDE 300

Query: 130 MPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLF 189
           M  ++VISW +++ G+   C +  A   F++M ER+ V+WT+MI GY R    +E   LF
Sbjct: 301 MKTRDVISWTSIVTGFANTCRIDLARKYFDQMPERDYVSWTAMIDGYLRMNRFKEVLTLF 360

Query: 190 RRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSC-NSMINGYIRF 248
           R M   NV      +        H  +L L    K   D     N     N++I+ Y + 
Sbjct: 361 RDMQMSNVKPDEFTMVSILTACAHLGALELGEWAKTYIDKNKIKNDTFIGNALIDMYFKC 420

Query: 249 GRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDR----DAVAWTAMI 304
           G +E+A+ +F+ +  +D+ +WT+MI G  + G    A  +F  M +     D + +  ++
Sbjct: 421 GNVEKAKKIFNEMQKKDKFTWTAMIVGLANNGHGEEALTMFSYMLEASVTPDEITYIGVM 480

Query: 305 SGLVQNELFVEATYLFMEMRA-HGVPP 330
                  L  +  + F  M   HG+ P
Sbjct: 481 CACTHVGLVAKGKHFFSNMAVQHGIKP 507



 Score =  122 bits (305), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 98/390 (25%), Positives = 165/390 (42%), Gaps = 62/390 (15%)

Query: 20  KYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAM 79
           KY K G ++            N++  NA++  F   G +  AR +F+EM  R+V+SWT++
Sbjct: 264 KYIKEGIVEP-----------NLILENALIDMFASCGEMDAARGVFDEMKTRDVISWTSI 312

Query: 80  ICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWN 139
           + G A+  R+  ARK F++MPER+ VSW +M+ G +R     E   +F  M + NV    
Sbjct: 313 VTGFANTCRIDLARKYFDQMPERDYVSWTAMIDGYLRMNRFKEVLTLFRDMQMSNVKPDE 372

Query: 140 AMIAGYVECCMMGEAIVLFEEME--------ERNVVTWTSMISGYCRAGEVEEGYCLFRR 191
             +   +  C    A+ L E  +        + +     ++I  Y + G VE+   +F  
Sbjct: 373 FTMVSILTACAHLGALELGEWAKTYIDKNKIKNDTFIGNALIDMYFKCGNVEKAKKIFNE 432

Query: 192 MPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRL 251
           M +K+  +WTAMI G A NG  +E+L +F  M                            
Sbjct: 433 MQKKDKFTWTAMIVGLANNGHGEEALTMFSYM---------------------------- 464

Query: 252 EEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVA-----WTAMISG 306
                  +     DEI++  ++     VG V+   + F NM  +  +      +  M+  
Sbjct: 465 ------LEASVTPDEITYIGVMCACTHVGLVAKGKHFFSNMAVQHGIKPNLTHYGCMVDL 518

Query: 307 LVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESD 366
           L +     EA  + M M    V P +  +  L GA     N+ L       +++ E E+ 
Sbjct: 519 LGRAGHLKEALEVIMNM---PVKPNSIVWGSLLGACRVHKNVQLAEMAANEILELEPENG 575

Query: 367 LILENCLISMYAKCGVIDNAYNIFSNMVSR 396
            +    L ++YA C    N +N+   M+ R
Sbjct: 576 AVYV-LLCNIYAACKKWKNLHNVRKMMMER 604



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 111/473 (23%), Positives = 187/473 (39%), Gaps = 99/473 (20%)

Query: 25  GFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERN------------ 72
           G +  A+ +F  +PQ +V  +N M+ G+ +         L++ M   N            
Sbjct: 83  GDVYYARKVFDEIPQPSVFIWNTMIKGYSRINCSESGVSLYKLMLVHNIKPDGFTFPFLL 142

Query: 73  -------------VVSWTAMICGLADA---------------GRVCEARKLFEEMPERNV 104
                        V+   A+I G  D+               G V  ARK+F+      V
Sbjct: 143 KGFTKDMALKYGKVLLNHAVIHGFLDSNLFVQKGFIHLFSLCGLVNYARKIFDMGDGWEV 202

Query: 105 VSWNSMVVGLIRNGELNEARKVFNSMPIK------------------------------- 133
           V+WN ++ G  R     E++++F  M  K                               
Sbjct: 203 VTWNVVLSGYNRFKRYEESKRLFIEMEKKCECVSPNSVTLVLMLSACSKLKDLVGGKCIY 262

Query: 134 -----------NVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEV 182
                      N+I  NA+I  +  C  M  A  +F+EM+ R+V++WTS+++G+     +
Sbjct: 263 NKYIKEGIVEPNLILENALIDMFASCGEMDAARGVFDEMKTRDVISWTSIVTGFANTCRI 322

Query: 183 EEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQ----SC 238
           +     F +MP ++ VSWTAMI G+      KE L LF +M+         NV+    + 
Sbjct: 323 DLARKYFDQMPERDYVSWTAMIDGYLRMNRFKEVLTLFRDMQ-------MSNVKPDEFTM 375

Query: 239 NSMINGYIRFGRLEE---AQNLFDTVPVR-DEISWTSMIDGYLSVGQVSNAYYLFHNMPD 294
            S++      G LE    A+   D   ++ D     ++ID Y   G V  A  +F+ M  
Sbjct: 376 VSILTACAHLGALELGEWAKTYIDKNKIKNDTFIGNALIDMYFKCGNVEKAKKIFNEMQK 435

Query: 295 RDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQI 354
           +D   WTAMI GL  N    EA  +F  M    V P   T+  +  A      +  G+  
Sbjct: 436 KDKFTWTAMIVGLANNGHGEEALTMFSYMLEASVTPDEITYIGVMCACTHVGLVAKGKHF 495

Query: 355 HC-VLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNM-VSRDLVSWNSMV 405
              + ++   + +L    C++ +  + G +  A  +  NM V  + + W S++
Sbjct: 496 FSNMAVQHGIKPNLTHYGCMVDLLGRAGHLKEALEVIMNMPVKPNSIVWGSLL 548



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 79/269 (29%), Positives = 131/269 (48%), Gaps = 15/269 (5%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWT 77
           I  ++  G +D A+ +F  M  R+V+S+ ++++GF    R+  AR+ F++MPER+ VSWT
Sbjct: 282 IDMFASCGEMDAARGVFDEMKTRDVISWTSIVTGFANTCRIDLARKYFDQMPERDYVSWT 341

Query: 78  AMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNG------ELNE-ARKVFNSM 130
           AMI G     R  E   LF +M   NV      +V ++         EL E A+   +  
Sbjct: 342 AMIDGYLRMNRFKEVLTLFRDMQMSNVKPDEFTMVSILTACAHLGALELGEWAKTYIDKN 401

Query: 131 PIKN-VISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLF 189
            IKN     NA+I  Y +C  + +A  +F EM++++  TWT+MI G    G  EE   +F
Sbjct: 402 KIKNDTFIGNALIDMYFKCGNVEKAKKIFNEMQKKDKFTWTAMIVGLANNGHGEEALTMF 461

Query: 190 RRMPRKNV----VSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGY 245
             M   +V    +++  ++      G   +    F  M     +G   N+     M++  
Sbjct: 462 SYMLEASVTPDEITYIGVMCACTHVGLVAKGKHFFSNMA--VQHGIKPNLTHYGCMVDLL 519

Query: 246 IRFGRLEEAQNLFDTVPVR-DEISWTSMI 273
            R G L+EA  +   +PV+ + I W S++
Sbjct: 520 GRAGHLKEALEVIMNMPVKPNSIVWGSLL 548



 Score = 78.6 bits (192), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 60/231 (25%), Positives = 107/231 (46%), Gaps = 19/231 (8%)

Query: 11  VVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPE 70
           V+  TS +T ++    ID A+  F  MP+R+ VS+ AM+ G+L+  R  E   LF +M  
Sbjct: 306 VISWTSIVTGFANTCRIDLARKYFDQMPERDYVSWTAMIDGYLRMNRFKEVLTLFRDMQM 365

Query: 71  RNV----VSWTAMICGLADAGRVCEARKLFEEMPERNVVS-----WNSMVVGLIRNGELN 121
            NV     +  +++   A  G + E  +  +   ++N +       N+++    + G + 
Sbjct: 366 SNVKPDEFTMVSILTACAHLGAL-ELGEWAKTYIDKNKIKNDTFIGNALIDMYFKCGNVE 424

Query: 122 EARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNV----VTWTSMISGYC 177
           +A+K+FN M  K+  +W AMI G        EA+ +F  M E +V    +T+  ++    
Sbjct: 425 KAKKIFNEMQKKDKFTWTAMIVGLANNGHGEEALTMFSYMLEASVTPDEITYIGVMCACT 484

Query: 178 RAGEVEEGYCLFRRMP-----RKNVVSWTAMIGGFAWNGFHKESLLLFIEM 223
             G V +G   F  M      + N+  +  M+      G  KE+L + + M
Sbjct: 485 HVGLVAKGKHFFSNMAVQHGIKPNLTHYGCMVDLLGRAGHLKEALEVIMNM 535


>gi|302805464|ref|XP_002984483.1| hypothetical protein SELMODRAFT_20613 [Selaginella moellendorffii]
 gi|300147871|gb|EFJ14533.1| hypothetical protein SELMODRAFT_20613 [Selaginella moellendorffii]
          Length = 550

 Score =  309 bits (792), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 172/541 (31%), Positives = 278/541 (51%), Gaps = 18/541 (3%)

Query: 6   HPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLF 65
           HP     HL +     ++ G +D  K +F  MPQRN+VS+N +L+  + NG  + AR + 
Sbjct: 28  HPNIYSWHLLAQAC--ARAGRLDHTKNIFDSMPQRNIVSWNLLLAALVANGSFTSARAVA 85

Query: 66  EEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARK 125
           +  P  + ++WT MI     AG++  AR  F+ M  R ++SWN ++    R G+++ AR 
Sbjct: 86  DRTPALDAITWTTMIQCYTHAGQIDRARAAFDSMTSRTILSWNCLITAHARCGQVSLARS 145

Query: 126 VFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEG 185
           VF SMP+ +++S  A++ GY++   + EA  +F  M  RN   W +M+S +  A  +E+ 
Sbjct: 146 VFESMPVFDLVSATAILVGYIQNQYLEEAQFVFFAMRHRNEFAWNAMVSAFAHARHLEKA 205

Query: 186 YCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGY 245
                RMP  +VV+WTA + G+A  G        F + K I D     N  S + M+  +
Sbjct: 206 QSFAERMPLHDVVTWTATLQGYAECGS-------FNDAKNIFDLMPERNAVSWSLMLVAF 258

Query: 246 IRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMIS 305
            R G L EA+ +F+ +P     +W +M+   +    + +A   F +MPDRD V+W AM+ 
Sbjct: 259 ARLGLLGEARRVFERLPALSLSAWNAMLTISVERATIEDAKLFFDSMPDRDVVSWNAMLQ 318

Query: 306 GLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESES 365
           G V +    EA   F+ M    +     +++ +  A      +D  R I   +   +S +
Sbjct: 319 GFVASCRIQEAWNFFLAMETRSI----VSWTEILTAHAQIQQLDEARSIFQAMPCRDSAA 374

Query: 366 DLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESML 425
                N L   +A  G + +A  IF  M  RD +SWN M+ G++ +G    +L +F +M 
Sbjct: 375 ----CNSLALAFAHSGRMGDARKIFDAMAERDAISWNVMIAGYAQNGEIASSLDIFSAMR 430

Query: 426 ESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKI 485
             G  P  +T+  +L+AC   GLV RGW+++ +M +         HY  M++LLGR G+I
Sbjct: 431 LQGVLPEDLTYTAVLTACGRGGLVDRGWDIWISMREDGDQHQQLVHYCCMVDLLGRCGRI 490

Query: 486 KEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNI 545
           +EA E V R+PF P +  W  LL +     G+   A+ AA    ELDP +   +V+L + 
Sbjct: 491 EEAHELVDRMPFFPSNLAWSMLLNSSAL-HGDGIRADLAATNAAELDPEDGAHYVLLSSF 549

Query: 546 Y 546
           Y
Sbjct: 550 Y 550



 Score = 43.9 bits (102), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 47/179 (26%), Positives = 80/179 (44%), Gaps = 23/179 (12%)

Query: 369 LENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESG 428
           L N L+ MY+ CG +D A +IF ++   ++ SW+ +    +  G  + T  +F+SM +  
Sbjct: 2   LSNLLLGMYSICGSLDEARSIFQSIAHPNIYSWHLLAQACARAGRLDHTKNIFDSMPQR- 60

Query: 429 THPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPE--HYVSMINLLGRAGKIK 486
              N V++  +L+A     LV+ G   F +   V    P  +   + +MI     AG+I 
Sbjct: 61  ---NIVSWNLLLAA-----LVANG--SFTSARAVADRTPALDAITWTTMIQCYTHAGQID 110

Query: 487 EAEEFVLRLPFEP-DHRI---WGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVV 541
            A     R  F+    R    W  L+ A   C G   +A    + +   D ++A A +V
Sbjct: 111 RA-----RAAFDSMTSRTILSWNCLITAHARC-GQVSLARSVFESMPVFDLVSATAILV 163


>gi|50080253|gb|AAT69588.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|222632650|gb|EEE64782.1| hypothetical protein OsJ_19638 [Oryza sativa Japonica Group]
          Length = 870

 Score =  309 bits (792), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 202/635 (31%), Positives = 309/635 (48%), Gaps = 87/635 (13%)

Query: 46  NAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEM------ 99
           NAMLS  ++ G +  A R+F +MPER+V SW  M+ G    G + EA  L+  M      
Sbjct: 135 NAMLSMLVRFGEIWHAWRVFAKMPERDVFSWNVMVGGYGKVGFLEEALDLYYRMLWAGMR 194

Query: 100 PE-----------RNVVSW----------------------NSMVVGLIRNGELNEARKV 126
           P+             +  W                      N++V    + G++  ARKV
Sbjct: 195 PDVYTFPCVLRTCGGIPDWRMGREVHAHVLRFGFGDEVDVLNALVTMYAKCGDIVAARKV 254

Query: 127 FNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEER----NVVTWTS----------- 171
           F+ M + + ISWNAMIAG+ E       + LF  M E     N++T TS           
Sbjct: 255 FDGMAVTDCISWNAMIAGHFENHECEAGLELFLTMLENEVQPNLMTITSVTVASGMLSEV 314

Query: 172 ------------------------MISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGF 207
                                   +I  Y   G + +   +F RM  K+ +SWTAMI G+
Sbjct: 315 GFAKEMHGFAVKRGFAIDVAFCNSLIQMYTSLGRMGDAGKIFSRMETKDAMSWTAMISGY 374

Query: 208 AWNGFHKESLLLF--IEMKGICDNGNNCNVQSCNSMINGYIRFG-RLEE-AQNLFDTVPV 263
             NGF  ++L ++  +E+  +  +              G +  G +L E AQN      +
Sbjct: 375 EKNGFPDKALEVYALMELHNVSPDDVTIASALAACACLGRLDVGIKLHELAQN---KGFI 431

Query: 264 RDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEM 323
           R  +   ++++ Y     +  A  +F  M ++D V+W++MI+G   N    EA Y F  M
Sbjct: 432 RYVVVANALLEMYAKSKHIDKAIEVFKFMAEKDVVSWSSMIAGFCFNHRSFEALYYFRYM 491

Query: 324 RAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVI 383
             H V P + TF     A  AT  +  G++IH  +++    S+  + N L+ +Y KCG  
Sbjct: 492 LGH-VKPNSVTFIAALSACAATGALRSGKEIHAYVLRCGIGSEGYVPNALLDLYVKCGQT 550

Query: 384 DNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSAC 443
             A+  FS    +D+VSWN M+ GF  HGL +  L +F  M+E G HP+ VTF+ +L AC
Sbjct: 551 SYAWAQFSVHSEKDVVSWNIMLSGFVAHGLGDIALSLFNQMVEMGEHPDEVTFVALLCAC 610

Query: 444 SHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRI 503
           S AG+V +GWELF+ M + + I P  +HY  M++LL R GK+ EA   + R+P +PD  +
Sbjct: 611 SRAGMVIQGWELFHMMTEKFSIVPNLKHYACMVDLLSRVGKLTEAYNLINRMPIKPDAAV 670

Query: 504 WGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMG 563
           WGALL  C     + E+ E AAK +LEL+P +   HV+LC++Y  +G+  +  ++R  M 
Sbjct: 671 WGALLNGCRI-HRHVELGELAAKVILELEPNDVAYHVLLCDLYTDAGKWAQVARVRKTMR 729

Query: 564 LKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
            KG+ +  GCSW+   G    FL+ D+   Q+ EI
Sbjct: 730 EKGLEQDNGCSWVEVKGVTHAFLTDDESHPQIKEI 764



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 134/530 (25%), Positives = 215/530 (40%), Gaps = 131/530 (24%)

Query: 46  NAMLSGFLQNGRLSEARRLFEEMPER-NVVSWTAMICGLADAGRVCEARKLFE------- 97
           +A L     +G+L++A  L E  PE  +  ++ A+        R+CE R+  +       
Sbjct: 68  SAALRALCSHGQLAQALWLLESSPEPPDEGAYVALF-------RLCEWRRAVDAGMRACA 120

Query: 98  ----EMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGE 153
               E P   +   N+M+  L+R GE+  A +VF  MP ++V SWN M+ GY +   + E
Sbjct: 121 RADAEHPSFGLRLGNAMLSMLVRFGEIWHAWRVFAKMPERDVFSWNVMVGGYGKVGFLEE 180

Query: 154 AIVLFEEM-----------------------------------------EERNVVTWTSM 172
           A+ L+  M                                         +E +V+   ++
Sbjct: 181 ALDLYYRMLWAGMRPDVYTFPCVLRTCGGIPDWRMGREVHAHVLRFGFGDEVDVL--NAL 238

Query: 173 ISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFI----------- 221
           ++ Y + G++     +F  M   + +SW AMI G   N   +  L LF+           
Sbjct: 239 VTMYAKCGDIVAARKVFDGMAVTDCISWNAMIAGHFENHECEAGLELFLTMLENEVQPNL 298

Query: 222 --------------------EMKGIC-DNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDT 260
                               EM G     G   +V  CNS+I  Y   GR+ +A  +F  
Sbjct: 299 MTITSVTVASGMLSEVGFAKEMHGFAVKRGFAIDVAFCNSLIQMYTSLGRMGDAGKIFSR 358

Query: 261 VPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLF 320
           +  +D +SWT+MI GY   G            PD+                    A  ++
Sbjct: 359 METKDAMSWTAMISGYEKNG-----------FPDK--------------------ALEVY 387

Query: 321 MEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKC 380
             M  H V P + T +    A      +D+G ++H +         +++ N L+ MYAK 
Sbjct: 388 ALMELHNVSPDDVTIASALAACACLGRLDVGIKLHELAQNKGFIRYVVVANALLEMYAKS 447

Query: 381 GVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGIL 440
             ID A  +F  M  +D+VSW+SM+ GF  +  + E L  F  ML     PNSVTF+  L
Sbjct: 448 KHIDKAIEVFKFMAEKDVVSWSSMIAGFCFNHRSFEALYYFRYML-GHVKPNSVTFIAAL 506

Query: 441 SACSHAGLVSRGWELFNAMFDVYKIQPGPEHYV--SMINLLGRAGKIKEA 488
           SAC+  G +  G E+      V +   G E YV  ++++L  + G+   A
Sbjct: 507 SACAATGALRSGKEIHAY---VLRCGIGSEGYVPNALLDLYVKCGQTSYA 553



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 108/448 (24%), Positives = 195/448 (43%), Gaps = 51/448 (11%)

Query: 14  LTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPER-- 71
           L + +T Y+K G I  A+ +F  M   + +S+NAM++G  +N        LF  M E   
Sbjct: 235 LNALVTMYAKCGDIVAARKVFDGMAVTDCISWNAMIAGHFENHECEAGLELFLTMLENEV 294

Query: 72  --NVVSWTAMICGLADAGRVCEARKLFEEMPER----NVVSWNSMVVGLIRNGELNEARK 125
             N+++ T++         V  A+++     +R    +V   NS++      G + +A K
Sbjct: 295 QPNLMTITSVTVASGMLSEVGFAKEMHGFAVKRGFAIDVAFCNSLIQMYTSLGRMGDAGK 354

Query: 126 VFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERN-------------------- 165
           +F+ M  K+ +SW AMI+GY +     +A+ ++  ME  N                    
Sbjct: 355 IFSRMETKDAMSWTAMISGYEKNGFPDKALEVYALMELHNVSPDDVTIASALAACACLGR 414

Query: 166 -------------------VVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGG 206
                              VV   +++  Y ++  +++   +F+ M  K+VVSW++MI G
Sbjct: 415 LDVGIKLHELAQNKGFIRYVVVANALLEMYAKSKHIDKAIEVFKFMAEKDVVSWSSMIAG 474

Query: 207 FAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNS-MINGYIRFGRLEEAQNLFDTVPVRD 265
           F +N    E+L  F  M G     +   + + ++    G +R G+   A  L   +    
Sbjct: 475 FCFNHRSFEALYYFRYMLGHVKPNSVTFIAALSACAATGALRSGKEIHAYVLRCGIGSEG 534

Query: 266 EISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRA 325
            +   +++D Y+  GQ S A+  F    ++D V+W  M+SG V + L   A  LF +M  
Sbjct: 535 YVP-NALLDLYVKCGQTSYAWAQFSVHSEKDVVSWNIMLSGFVAHGLGDIALSLFNQMVE 593

Query: 326 HGVPPLNATFSVLFGAAGATANIDLGRQI-HCVLMKTESESDLILENCLISMYAKCGVID 384
            G  P   TF  L  A      +  G ++ H +  K     +L    C++ + ++ G + 
Sbjct: 594 MGEHPDEVTFVALLCACSRAGMVIQGWELFHMMTEKFSIVPNLKHYACMVDLLSRVGKLT 653

Query: 385 NAYNIFSNM-VSRDLVSWNSMVMGFSHH 411
            AYN+ + M +  D   W +++ G   H
Sbjct: 654 EAYNLINRMPIKPDAAVWGALLNGCRIH 681



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 88/350 (25%), Positives = 151/350 (43%), Gaps = 59/350 (16%)

Query: 11  VVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPE 70
           V    S I  Y+  G + +A  +F  M  ++ +S+ AM+SG+ +NG   +A  ++  M  
Sbjct: 333 VAFCNSLIQMYTSLGRMGDAGKIFSRMETKDAMSWTAMISGYEKNGFPDKALEVYALMEL 392

Query: 71  RNV----VSWTAMICGLADAGRVCEARKLFEEMPE----RNVVSWNSMVVGLIRNGELNE 122
            NV    V+  + +   A  GR+    KL E        R VV  N+++    ++  +++
Sbjct: 393 HNVSPDDVTIASALAACACLGRLDVGIKLHELAQNKGFIRYVVVANALLEMYAKSKHIDK 452

Query: 123 ARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEM---EERNVVTWTSMISG---- 175
           A +VF  M  K+V+SW++MIAG+       EA+  F  M    + N VT+ + +S     
Sbjct: 453 AIEVFKFMAEKDVVSWSSMIAGFCFNHRSFEALYYFRYMLGHVKPNSVTFIAALSACAAT 512

Query: 176 -------------------------------YCRAGEVEEGYCLFRRMPRKNVVSWTAMI 204
                                          Y + G+    +  F     K+VVSW  M+
Sbjct: 513 GALRSGKEIHAYVLRCGIGSEGYVPNALLDLYVKCGQTSYAWAQFSVHSEKDVVSWNIML 572

Query: 205 GGFAWNGFHKESLLLFIEMKGICDNGNN-------CNVQSCNSMINGYIRFGRLEEAQNL 257
            GF  +G    +L LF +M  + ++ +        C       +I G+  F  + E    
Sbjct: 573 SGFVAHGLGDIALSLFNQMVEMGEHPDEVTFVALLCACSRAGMVIQGWELFHMMTEK--- 629

Query: 258 FDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDR-DAVAWTAMISG 306
           F  VP  +   +  M+D    VG+++ AY L + MP + DA  W A+++G
Sbjct: 630 FSIVP--NLKHYACMVDLLSRVGKLTEAYNLINRMPIKPDAAVWGALLNG 677


>gi|297816638|ref|XP_002876202.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297322040|gb|EFH52461.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 769

 Score =  309 bits (792), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 186/634 (29%), Positives = 330/634 (52%), Gaps = 57/634 (8%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVV--- 74
           ++ Y K G + +A+ +F  MP+RN+VSY ++++G+ QNG+ +EA  L+ +M + ++V   
Sbjct: 106 LSMYGKCGSLRDAREVFDFMPERNLVSYTSVITGYSQNGQEAEAITLYLKMLQADLVPDQ 165

Query: 75  -SWTAMICGLADAGRVCEARKLFEEM----PERNVVSWNSMVVGLIRNGELNEARKVFNS 129
            ++ ++I   A AG V   ++L  ++       ++++ N+++   +R  ++++A KVF  
Sbjct: 166 FAFGSIIKACACAGDVVLGKQLHAQVIKLESSSHLIAQNALIAMYVRFNQMSDASKVFYG 225

Query: 130 MPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEE-------------------------- 163
           +P K++ISW+++IAG+ +     EA+   +EM                            
Sbjct: 226 IPAKDLISWSSIIAGFSQLGFEFEALSHLKEMLSFGVFHPNEYIFGSSLKACSSLLRPDY 285

Query: 164 --------------RNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAW 209
                          N +   S+   Y R G ++    +F ++ R +  SW  +I G A 
Sbjct: 286 GSQIHGLCIKLELTGNAIAGCSLCDMYARCGFLDSARRVFNQIERPDTASWNVIIAGLAN 345

Query: 210 NGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVP----VRD 265
           NG+  E++ +F EM+   ++G   +  S  S++    +   L +   +   +     + D
Sbjct: 346 NGYADEAVSVFSEMR---NSGFIPDAISLRSLLCAQTKPMALCQGMQIHSFIIKCGFLAD 402

Query: 266 EISWTSMIDGYLSVGQVSNAYYLFHNMPDR-DAVAWTAMISGLVQNELFVEATYLFMEMR 324
                S++  Y     +   + LF +  ++ D+V+W A+++  +Q+E  VE   LF  M 
Sbjct: 403 LSVCNSLLTMYTFCSDLYCCFNLFEDFRNKADSVSWNAILTACLQHEQPVEMLRLFKLML 462

Query: 325 AHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVID 384
                P + T   L       +++ LG Q+HC   KT    +  ++N LI MYAKCG + 
Sbjct: 463 VSECEPDHITMGNLLRGCVEISSLKLGSQVHCYSWKTGLVLEQFIKNGLIDMYAKCGSLR 522

Query: 385 NAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACS 444
            A  IF +M + D+VSW+++++G++  G   E L +F  M  SG  PN VTF+G+L+ACS
Sbjct: 523 QARRIFDSMDNGDVVSWSTLIVGYAQSGFGEEALILFREMKSSGIEPNHVTFVGVLTACS 582

Query: 445 HAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIW 504
           H GLV  G +L+  M   + I P  EH   +++LL RAG + EAE F+  +  EPD  +W
Sbjct: 583 HVGLVEEGLKLYAIMQTEHGISPTKEHCSCVVDLLARAGHLNEAERFIDEMKLEPDVVVW 642

Query: 505 GALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGL 564
             LL AC   +GN ++A+ AA+ +L++DP N+ AHV+LC+++A+SG   +   LR  M  
Sbjct: 643 KTLLSACK-TQGNVDLAQKAAENILKIDPFNSTAHVLLCSMHASSGNWEDAALLRSSMKK 701

Query: 565 KGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
             V+K+PG SW+     I +F + D +  +  +I
Sbjct: 702 HDVKKIPGQSWIDVEDKIHIFFAEDVLHPERDDI 735



 Score =  121 bits (304), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 91/362 (25%), Positives = 173/362 (47%), Gaps = 49/362 (13%)

Query: 106 SWNSMVVGLIRNGELNEARKV----FNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEM 161
           ++ S++     +  L + RK+     NS    + I  N +++ Y +C  + +A  +F+ M
Sbjct: 66  TYISLICACSSSRSLAQGRKIHDHILNSNCKYDTILNNHILSMYGKCGSLRDAREVFDFM 125

Query: 162 EERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVV----SWTAMIGGFAWNG---FHK 214
            ERN+V++TS+I+GY + G+  E   L+ +M + ++V    ++ ++I   A  G     K
Sbjct: 126 PERNLVSYTSVITGYSQNGQEAEAITLYLKMLQADLVPDQFAFGSIIKACACAGDVVLGK 185

Query: 215 ESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMID 274
           +     I+++      ++ ++ + N++I  Y+RF ++ +A  +F  +P +D ISW+S+I 
Sbjct: 186 QLHAQVIKLE------SSSHLIAQNALIAMYVRFNQMSDASKVFYGIPAKDLISWSSIIA 239

Query: 275 GYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGV-PPLNA 333
           G+  +G                                  EA     EM + GV  P   
Sbjct: 240 GFSQLG-------------------------------FEFEALSHLKEMLSFGVFHPNEY 268

Query: 334 TFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNM 393
            F     A  +    D G QIH + +K E   + I    L  MYA+CG +D+A  +F+ +
Sbjct: 269 IFGSSLKACSSLLRPDYGSQIHGLCIKLELTGNAIAGCSLCDMYARCGFLDSARRVFNQI 328

Query: 394 VSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGW 453
              D  SWN ++ G +++G A+E + VF  M  SG  P++++   +L A +    + +G 
Sbjct: 329 ERPDTASWNVIIAGLANNGYADEAVSVFSEMRNSGFIPDAISLRSLLCAQTKPMALCQGM 388

Query: 454 EL 455
           ++
Sbjct: 389 QI 390



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 80/289 (27%), Positives = 128/289 (44%), Gaps = 49/289 (16%)

Query: 304 ISGLVQNELFVEATYLFMEMRAHGVPPLNATFSV-------LFGAAGATANIDLGRQIHC 356
           I+ L +N  + EA      + A      N++F +       L  A  ++ ++  GR+IH 
Sbjct: 35  INSLCRNSFYREA------LEAFDFAQKNSSFKIRLRTYISLICACSSSRSLAQGRKIHD 88

Query: 357 VLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANE 416
            ++ +  + D IL N ++SMY KCG + +A  +F  M  R+LVS+ S++ G+S +G   E
Sbjct: 89  HILNSNCKYDTILNNHILSMYGKCGSLRDAREVFDFMPERNLVSYTSVITGYSQNGQEAE 148

Query: 417 TLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWEL--------------------- 455
            + ++  ML++   P+   F  I+ AC+ AG V  G +L                     
Sbjct: 149 AITLYLKMLQADLVPDQFAFGSIIKACACAGDVVLGKQLHAQVIKLESSSHLIAQNALIA 208

Query: 456 ----FNAMFDVYKIQPG-PEH----YVSMINLLGRAGKIKEA----EEFVLRLPFEPDHR 502
               FN M D  K+  G P      + S+I    + G   EA    +E +    F P+  
Sbjct: 209 MYVRFNQMSDASKVFYGIPAKDLISWSSIIAGFSQLGFEFEALSHLKEMLSFGVFHPNEY 268

Query: 503 IWGALLGAC-GFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASG 550
           I+G+ L AC      +     H     LEL   NA A   LC++YA  G
Sbjct: 269 IFGSSLKACSSLLRPDYGSQIHGLCIKLELTG-NAIAGCSLCDMYARCG 316


>gi|224129982|ref|XP_002320719.1| predicted protein [Populus trichocarpa]
 gi|222861492|gb|EEE99034.1| predicted protein [Populus trichocarpa]
          Length = 643

 Score =  309 bits (791), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 176/495 (35%), Positives = 272/495 (54%), Gaps = 43/495 (8%)

Query: 108 NSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFE--EMEERN 165
           N ++   ++ G L  A +VF+ MP ++ +S+N+MI GYV+   +  A V+F+   +EERN
Sbjct: 166 NCLISFYVKCGCLVRASQVFDRMPKRDSVSYNSMIDGYVKGGRIDLARVVFDCIPLEERN 225

Query: 166 VVTWTSMISGYCRAGE-VEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMK 224
           +++W S+I GY ++ + +   + LF +MP ++++SW                        
Sbjct: 226 LISWNSLIRGYAQSEDGILVAWQLFAKMPERDLISW------------------------ 261

Query: 225 GICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSN 284
                         NSMI+G ++ GR+E+AQ LFD +P RD +SW +MIDGY   G+V  
Sbjct: 262 --------------NSMIDGCVKCGRMEDAQGLFDRMPNRDIVSWANMIDGYAKNGRVDI 307

Query: 285 AYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPL-NATFSVLFGAAG 343
           A  LF  MP+RD VA+ AM+ G VQN   +EA  +F  M++ G   L NAT  +   A  
Sbjct: 308 ARSLFDEMPERDVVAYNAMMGGYVQNGYCMEALGIFYGMQSDGNFLLDNATLLIALSAIA 367

Query: 344 ATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNS 403
              +ID G  IH  + +     D  L   LI MY+KCG I+NA  +F N+  + +  WN+
Sbjct: 368 QLGHIDKGVAIHRFIEEIGFSLDGRLGVALIDMYSKCGSIENAMMVFENIKEKSVDHWNA 427

Query: 404 MVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVY 463
           ++ G + HGL          M      P+ +TF+G+L+AC HAGLV  G   F  M  V+
Sbjct: 428 IIGGLAIHGLGELAFDFLMEMERMRVEPDDITFIGLLNACGHAGLVKEGMMCFELMRRVH 487

Query: 464 KIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEH 523
           K++P  +HY  M+++LGRAG I+EA+ FV  +PFEP+  IW +LL AC   E +  + + 
Sbjct: 488 KVEPKLQHYGCMVDILGRAGHIEEAKNFVEEMPFEPNDVIWRSLLSACKTHE-SFNVGQP 546

Query: 524 AAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQ 583
            A+ L+ LD  +  ++V+  N+YA  G+  +  K+R  M  K ++K+PGCSW+   G + 
Sbjct: 547 VAENLMRLDSPSPSSYVLASNMYAGLGKWNDVRKVRAMMKQKNLKKIPGCSWIELEGHVY 606

Query: 584 MFLSGDKIPAQVAEI 598
            F   DK   Q + I
Sbjct: 607 AFFVQDKSHPQFSGI 621



 Score =  179 bits (455), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 128/449 (28%), Positives = 230/449 (51%), Gaps = 36/449 (8%)

Query: 22  SKRGFIDEAKALFQLMPQ----RNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWT 77
           S+ G + E   +  L+ +     ++   N ++S +++ G L  A ++F+ MP+R+ VS+ 
Sbjct: 138 SRVGLVKEGMQIHGLLKKLEFGSDLFLQNCLISFYVKCGCLVRASQVFDRMPKRDSVSYN 197

Query: 78  AMICGLADAGRVCEARKLFEEMP--ERNVVSWNSMVVGLIRNGE-LNEARKVFNSMPIKN 134
           +MI G    GR+  AR +F+ +P  ERN++SWNS++ G  ++ + +  A ++F  MP ++
Sbjct: 198 SMIDGYVKGGRIDLARVVFDCIPLEERNLISWNSLIRGYAQSEDGILVAWQLFAKMPERD 257

Query: 135 VISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPR 194
           +ISWN+MI G V+C  M +A  LF+ M  R++V+W +MI GY + G V+    LF  MP 
Sbjct: 258 LISWNSMIDGCVKCGRMEDAQGLFDRMPNRDIVSWANMIDGYAKNGRVDIARSLFDEMPE 317

Query: 195 KNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEA 254
           ++VV++ AM+GG+  NG+  E+L +F  M+   D     +  +    ++   + G +++ 
Sbjct: 318 RDVVAYNAMMGGYVQNGYCMEALGIFYGMQS--DGNFLLDNATLLIALSAIAQLGHIDKG 375

Query: 255 QNLFDTVPVRDEISWT-------SMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGL 307
             +   +   +EI ++       ++ID Y   G + NA  +F N+ ++    W A+I GL
Sbjct: 376 VAIHRFI---EEIGFSLDGRLGVALIDMYSKCGSIENAMMVFENIKEKSVDHWNAIIGGL 432

Query: 308 VQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANI-------DLGRQIHCVLMK 360
             + L   A    MEM    V P + TF  L  A G    +       +L R++H V   
Sbjct: 433 AIHGLGELAFDFLMEMERMRVEPDDITFIGLLNACGHAGLVKEGMMCFELMRRVHKV--- 489

Query: 361 TESESDLILENCLISMYAKCGVIDNAYNIFSNM-VSRDLVSWNSMVMGFSHHGLANETLK 419
              E  L    C++ +  + G I+ A N    M    + V W S++     H   N    
Sbjct: 490 ---EPKLQHYGCMVDILGRAGHIEEAKNFVEEMPFEPNDVIWRSLLSACKTHESFNVGQP 546

Query: 420 VFESMLESGTHPNSVTFLGILSACSHAGL 448
           V E+++   + P+  ++  +L++  +AGL
Sbjct: 547 VAENLMRLDS-PSPSSY--VLASNMYAGL 572



 Score =  138 bits (348), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 93/344 (27%), Positives = 163/344 (47%), Gaps = 77/344 (22%)

Query: 7   PKSLVVHLTSSITKYSKRGFIDEAKALFQLMP--QRNVVSYNAMLSGFLQN-GRLSEARR 63
           PK   V   S I  Y K G ID A+ +F  +P  +RN++S+N+++ G+ Q+   +  A +
Sbjct: 189 PKRDSVSYNSMIDGYVKGGRIDLARVVFDCIPLEERNLISWNSLIRGYAQSEDGILVAWQ 248

Query: 64  LFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEA 123
           LF +MPER+++SW +MI G    GR+ +A+ LF+ MP R++VSW +M+ G  +NG ++ A
Sbjct: 249 LFAKMPERDLISWNSMIDGCVKCGRMEDAQGLFDRMPNRDIVSWANMIDGYAKNGRVDIA 308

Query: 124 RKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEME--------------------- 162
           R +F+ MP ++V+++NAM+ GYV+     EA+ +F  M+                     
Sbjct: 309 RSLFDEMPERDVVAYNAMMGGYVQNGYCMEALGIFYGMQSDGNFLLDNATLLIALSAIAQ 368

Query: 163 ----ERNVVTW---------------TSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAM 203
               ++ V                   ++I  Y + G +E    +F  +  K+V  W A+
Sbjct: 369 LGHIDKGVAIHRFIEEIGFSLDGRLGVALIDMYSKCGSIENAMMVFENIKEKSVDHWNAI 428

Query: 204 IGGFAWNGFHKESLLLFIEMK---------------------GICDNGNNC--------- 233
           IGG A +G  + +    +EM+                     G+   G  C         
Sbjct: 429 IGGLAIHGLGELAFDFLMEMERMRVEPDDITFIGLLNACGHAGLVKEGMMCFELMRRVHK 488

Query: 234 ---NVQSCNSMINGYIRFGRLEEAQNLFDTVPVR-DEISWTSMI 273
               +Q    M++   R G +EEA+N  + +P   +++ W S++
Sbjct: 489 VEPKLQHYGCMVDILGRAGHIEEAKNFVEEMPFEPNDVIWRSLL 532



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 62/197 (31%), Positives = 92/197 (46%), Gaps = 6/197 (3%)

Query: 300 WTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLM 359
           W A+I          EA +L   M  +G      T S++  A      +  G QIH +L 
Sbjct: 95  WNAIIKTYSHGHDPKEAMWLVSLMLENGAFADKFTLSLVLKACSRVGLVKEGMQIHGLLK 154

Query: 360 KTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLK 419
           K E  SDL L+NCLIS Y KCG +  A  +F  M  RD VS+NSM+ G+   G  +    
Sbjct: 155 KLEFGSDLFLQNCLISFYVKCGCLVRASQVFDRMPKRDSVSYNSMIDGYVKGGRIDLARV 214

Query: 420 VFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLL 479
           VF+ +     +  S   L    A S  G++   W+LF  M +   I      + SMI+  
Sbjct: 215 VFDCIPLEERNLISWNSLIRGYAQSEDGILV-AWQLFAKMPERDLIS-----WNSMIDGC 268

Query: 480 GRAGKIKEAEEFVLRLP 496
            + G++++A+    R+P
Sbjct: 269 VKCGRMEDAQGLFDRMP 285



 Score = 42.4 bits (98), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 36/137 (26%), Positives = 63/137 (45%), Gaps = 10/137 (7%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMP----ERNV 73
           I  YSK G I+ A  +F+ + +++V  +NA++ G   +G    A     EM     E + 
Sbjct: 398 IDMYSKCGSIENAMMVFENIKEKSVDHWNAIIGGLAIHGLGELAFDFLMEMERMRVEPDD 457

Query: 74  VSWTAMICGLADAGRVCEARKLFEEMP-----ERNVVSWNSMVVGLIRNGELNEARKVFN 128
           +++  ++     AG V E    FE M      E  +  +  MV  L R G + EA+    
Sbjct: 458 ITFIGLLNACGHAGLVKEGMMCFELMRRVHKVEPKLQHYGCMVDILGRAGHIEEAKNFVE 517

Query: 129 SMPIK-NVISWNAMIAG 144
            MP + N + W ++++ 
Sbjct: 518 EMPFEPNDVIWRSLLSA 534


>gi|124360491|gb|ABN08501.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 575

 Score =  309 bits (791), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 174/507 (34%), Positives = 272/507 (53%), Gaps = 49/507 (9%)

Query: 116 RNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEE----RNVVTWTS 171
           + G +  ARK+F+ MP + V  WN MI+GY +C    EA  LF  M +    RNV+TWT+
Sbjct: 74  KYGPIEFARKLFDEMPDRTVADWNVMISGYWKCGNEEEASTLFHVMGDQEISRNVITWTT 133

Query: 172 MISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEM-------- 223
           MI+G+ + G ++     F +MP ++VVSW AM+ G+A  G  +E++ LF +M        
Sbjct: 134 MITGHAKKGNLKTARMYFDKMPERSVVSWNAMLSGYAQGGAPEETIRLFNDMLSPGNVQP 193

Query: 224 ---------KGICDNGNNCNVQSC-----------------NSMINGYIRFGRLEEAQNL 257
                          G+ C  +S                   ++++ + + G LE A  +
Sbjct: 194 DETTWATVISSCSSLGDPCLSESIVRKLDDKVGFRPNYFVKTALLDMHAKCGNLEAAHKI 253

Query: 258 FDTVPV---RDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFV 314
           F+ + V   R  + W +MI  Y  VG + +A +LF  MP RD V+W +MI+G  QN    
Sbjct: 254 FEQLGVYKYRSSVPWNAMISAYARVGDLPSAKHLFDKMPQRDTVSWNSMIAGYTQNGESF 313

Query: 315 EATYLFMEM--RAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENC 372
           +A  LF EM        P   T   +F A G    + LG     +L     +  + + N 
Sbjct: 314 KAIKLFEEMISSEDSRKPDEVTMVSVFSACGHLGELGLGNWAVSILKVNHIQISISVYNS 373

Query: 373 LISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPN 432
           LI+MY++CG + +A  IF  M +RDLVS+N+++ GF+ HG   E++++   M E G  P+
Sbjct: 374 LINMYSRCGSMQDAVLIFQEMATRDLVSYNTLISGFAEHGHGMESIELLSKMKEDGIEPD 433

Query: 433 SVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFV 492
            +T++ IL+ACSHAGL+  G  LF ++       P  +HY  MI++LGRAG+++EA + +
Sbjct: 434 RITYIAILTACSHAGLLDEGQRLFESI-----KFPDVDHYACMIDMLGRAGRLEEAMKLI 488

Query: 493 LRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRH 552
             +P EP   I+G+LL A    +   E+ E AA +L +++P N+  + +L NIYA++GR 
Sbjct: 489 QSMPMEPHAGIYGSLLNATSIHK-QVELGELAAAKLFKVEPHNSGNYALLSNIYASAGRW 547

Query: 553 VEEHKLRMDMGLKGVRKVPGCSWLMRN 579
            E  K+R  M  +GV+K  G SWL  N
Sbjct: 548 KEGDKVRDTMRKQGVKKTTGLSWLEHN 574



 Score =  173 bits (438), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 122/428 (28%), Positives = 203/428 (47%), Gaps = 63/428 (14%)

Query: 21  YSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPE----RNVVSW 76
           Y+K G I+ A+ LF  MP R V  +N M+SG+ + G   EA  LF  M +    RNV++W
Sbjct: 72  YAKYGPIEFARKLFDEMPDRTVADWNVMISGYWKCGNEEEASTLFHVMGDQEISRNVITW 131

Query: 77  TAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSM-PIKNV 135
           T MI G A  G +  AR  F++MPER+VVSWN+M+ G  + G   E  ++FN M    NV
Sbjct: 132 TTMITGHAKKGNLKTARMYFDKMPERSVVSWNAMLSGYAQGGAPEETIRLFNDMLSPGNV 191

Query: 136 ----ISWNAMIAG------------------------------------YVECCMMGEAI 155
                +W  +I+                                     + +C  +  A 
Sbjct: 192 QPDETTWATVISSCSSLGDPCLSESIVRKLDDKVGFRPNYFVKTALLDMHAKCGNLEAAH 251

Query: 156 VLFEEM---EERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGF 212
            +FE++   + R+ V W +MIS Y R G++     LF +MP+++ VSW +MI G+  NG 
Sbjct: 252 KIFEQLGVYKYRSSVPWNAMISAYARVGDLPSAKHLFDKMPQRDTVSWNSMIAGYTQNGE 311

Query: 213 HKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEE------AQNLFDTVPVRDE 266
             +++ LF EM    D+     V    +M++ +   G L E      A ++     ++  
Sbjct: 312 SFKAIKLFEEMISSEDSRKPDEV----TMVSVFSACGHLGELGLGNWAVSILKVNHIQIS 367

Query: 267 IS-WTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRA 325
           IS + S+I+ Y   G + +A  +F  M  RD V++  +ISG  ++   +E+  L  +M+ 
Sbjct: 368 ISVYNSLINMYSRCGSMQDAVLIFQEMATRDLVSYNTLISGFAEHGHGMESIELLSKMKE 427

Query: 326 HGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDN 385
            G+ P   T+  +  A      +D G++    L ++    D+    C+I M  + G ++ 
Sbjct: 428 DGIEPDRITYIAILTACSHAGLLDEGQR----LFESIKFPDVDHYACMIDMLGRAGRLEE 483

Query: 386 AYNIFSNM 393
           A  +  +M
Sbjct: 484 AMKLIQSM 491



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 99/368 (26%), Positives = 166/368 (45%), Gaps = 88/368 (23%)

Query: 11  VVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEM-- 68
           V+  T+ IT ++K+G +  A+  F  MP+R+VVS+NAMLSG+ Q G   E  RLF +M  
Sbjct: 128 VITWTTMITGHAKKGNLKTARMYFDKMPERSVVSWNAMLSGYAQGGAPEETIRLFNDMLS 187

Query: 69  ---PERNVVSWTAMICGLADAGRVC----------------------------------- 90
               + +  +W  +I   +  G  C                                   
Sbjct: 188 PGNVQPDETTWATVISSCSSLGDPCLSESIVRKLDDKVGFRPNYFVKTALLDMHAKCGNL 247

Query: 91  -EARKLFEEM---PERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYV 146
             A K+FE++     R+ V WN+M+    R G+L  A+ +F+ MP ++ +SWN+MIAGY 
Sbjct: 248 EAAHKIFEQLGVYKYRSSVPWNAMISAYARVGDLPSAKHLFDKMPQRDTVSWNSMIAGYT 307

Query: 147 ECCMMGEAIVLFEEM---------EERNVVT----------------------------- 168
           +     +AI LFEEM         +E  +V+                             
Sbjct: 308 QNGESFKAIKLFEEMISSEDSRKPDEVTMVSVFSACGHLGELGLGNWAVSILKVNHIQIS 367

Query: 169 ---WTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKG 225
              + S+I+ Y R G +++   +F+ M  +++VS+  +I GFA +G   ES+ L  +MK 
Sbjct: 368 ISVYNSLINMYSRCGSMQDAVLIFQEMATRDLVSYNTLISGFAEHGHGMESIELLSKMK- 426

Query: 226 ICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNA 285
             ++G   +  +  +++      G L+E Q LF+++   D   +  MID     G++  A
Sbjct: 427 --EDGIEPDRITYIAILTACSHAGLLDEGQRLFESIKFPDVDHYACMIDMLGRAGRLEEA 484

Query: 286 YYLFHNMP 293
             L  +MP
Sbjct: 485 MKLIQSMP 492



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 85/324 (26%), Positives = 138/324 (42%), Gaps = 76/324 (23%)

Query: 239 NSMINGYIRFGRLEEAQNLFDTVP-----------------------------------V 263
           N ++  Y ++G +E A+ LFD +P                                    
Sbjct: 66  NGILGIYAKYGPIEFARKLFDEMPDRTVADWNVMISGYWKCGNEEEASTLFHVMGDQEIS 125

Query: 264 RDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEM 323
           R+ I+WT+MI G+   G +  A   F  MP+R  V+W AM+SG  Q     E   LF +M
Sbjct: 126 RNVITWTTMITGHAKKGNLKTARMYFDKMPERSVVSWNAMLSGYAQGGAPEETIRLFNDM 185

Query: 324 RAHG-VPPLNATFSVLFGAAGATANIDLGRQI-----------------------HCVLM 359
            + G V P   T++ +  +  +  +  L   I                       H    
Sbjct: 186 LSPGNVQPDETTWATVISSCSSLGDPCLSESIVRKLDDKVGFRPNYFVKTALLDMHAKCG 245

Query: 360 KTESESDLILE------------NCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMG 407
             E+   +  +            N +IS YA+ G + +A ++F  M  RD VSWNSM+ G
Sbjct: 246 NLEAAHKIFEQLGVYKYRSSVPWNAMISAYARVGDLPSAKHLFDKMPQRDTVSWNSMIAG 305

Query: 408 FSHHGLANETLKVFESML--ESGTHPNSVTFLGILSACSHAGLVSRG-WELFNAMFDVYK 464
           ++ +G + + +K+FE M+  E    P+ VT + + SAC H G +  G W +  ++  V  
Sbjct: 306 YTQNGESFKAIKLFEEMISSEDSRKPDEVTMVSVFSACGHLGELGLGNWAV--SILKVNH 363

Query: 465 IQPGPEHYVSMINLLGRAGKIKEA 488
           IQ     Y S+IN+  R G +++A
Sbjct: 364 IQISISVYNSLINMYSRCGSMQDA 387



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 63/218 (28%), Positives = 108/218 (49%), Gaps = 22/218 (10%)

Query: 5   NHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRL 64
           NH +  +    S I  YS+ G + +A  +FQ M  R++VSYN ++SGF ++G   E+  L
Sbjct: 362 NHIQISISVYNSLINMYSRCGSMQDAVLIFQEMATRDLVSYNTLISGFAEHGHGMESIEL 421

Query: 65  FEEMPERNV----VSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGEL 120
             +M E  +    +++ A++   + AG + E ++LFE +   +V  +  M+  L R G L
Sbjct: 422 LSKMKEDGIEPDRITYIAILTACSHAGLLDEGQRLFESIKFPDVDHYACMIDMLGRAGRL 481

Query: 121 NEARKVFNSMPIKNVISWNAMIAGYV-------ECCMMGE--AIVLFEEMEERNVVTWTS 171
            EA K+  SMP++     +A I G +       +   +GE  A  LF ++E  N   +  
Sbjct: 482 EEAMKLIQSMPMEP----HAGIYGSLLNATSIHKQVELGELAAAKLF-KVEPHNSGNYAL 536

Query: 172 MISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAW 209
           + + Y  AG  +EG  +   M ++ V   T    G +W
Sbjct: 537 LSNIYASAGRWKEGDKVRDTMRKQGVKKTT----GLSW 570



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 62/275 (22%), Positives = 112/275 (40%), Gaps = 39/275 (14%)

Query: 264 RDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEM 323
           RD      ++  Y   G +  A  LF  MPDR    W  MISG  +     EA+ LF   
Sbjct: 60  RDHYVRNGILGIYAKYGPIEFARKLFDEMPDRTVADWNVMISGYWKCGNEEEASTLFH-- 117

Query: 324 RAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVI 383
                                            V+   E   ++I    +I+ +AK G +
Sbjct: 118 ---------------------------------VMGDQEISRNVITWTTMITGHAKKGNL 144

Query: 384 DNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESG-THPNSVTFLGILSA 442
             A   F  M  R +VSWN+M+ G++  G   ET+++F  ML  G   P+  T+  ++S+
Sbjct: 145 KTARMYFDKMPERSVVSWNAMLSGYAQGGAPEETIRLFNDMLSPGNVQPDETTWATVISS 204

Query: 443 CSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLP-FEPDH 501
           CS  G       +   + D    +P      +++++  + G ++ A +   +L  ++   
Sbjct: 205 CSSLGDPCLSESIVRKLDDKVGFRPNYFVKTALLDMHAKCGNLEAAHKIFEQLGVYKYRS 264

Query: 502 RI-WGALLGACGFCEGNAEIAEHAAKRLLELDPLN 535
            + W A++ A     G+   A+H   ++ + D ++
Sbjct: 265 SVPWNAMISAYARV-GDLPSAKHLFDKMPQRDTVS 298



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 63/280 (22%), Positives = 117/280 (41%), Gaps = 38/280 (13%)

Query: 308 VQNELFVEATYLFMEMRAH-GVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESD 366
           V +++FV    LF  M  H  + P  + +SV+  +AG+ + + L       ++K+  + D
Sbjct: 10  VHSQVFVS---LFKHMLQHCDIKPNASFYSVMMKSAGSESMLFLAH-----VLKSGYDRD 61

Query: 367 LILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLE 426
             + N ++ +YAK G I+ A  +F  M  R +  WN M+ G+   G   E   +F  M +
Sbjct: 62  HYVRNGILGIYAKYGPIEFARKLFDEMPDRTVADWNVMISGYWKCGNEEEASTLFHVMGD 121

Query: 427 SGTHPNSVTFLGILSACSHAG-----------LVSRGWELFNAMFDVYKIQPGPEHYVSM 475
                N +T+  +++  +  G           +  R    +NAM   Y     PE  + +
Sbjct: 122 QEISRNVITWTTMITGHAKKGNLKTARMYFDKMPERSVVSWNAMLSGYAQGGAPEETIRL 181

Query: 476 INLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLE---LD 532
            N +   G +            +PD   W  ++ +C    G+  ++E   ++L +     
Sbjct: 182 FNDMLSPGNV------------QPDETTWATVISSCSSL-GDPCLSESIVRKLDDKVGFR 228

Query: 533 PLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVR-KVP 571
           P N      L +++A  G     HK+   +G+   R  VP
Sbjct: 229 P-NYFVKTALLDMHAKCGNLEAAHKIFEQLGVYKYRSSVP 267


>gi|357450795|ref|XP_003595674.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355484722|gb|AES65925.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 975

 Score =  309 bits (791), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 192/636 (30%), Positives = 323/636 (50%), Gaps = 60/636 (9%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEE--------MP 69
           I  Y K GF++ A  +F  MPQRN+VS+N+++   L+NG   E+  LF+         MP
Sbjct: 238 IAMYGKFGFVESAVKVFDKMPQRNLVSWNSVMYACLENGVFEESYGLFKGLLNGDEGLMP 297

Query: 70  ERNVVSWTAMIC-------------GLA--------------------DAGRVCEARKLF 96
           +   +     +C             GLA                      G +CEAR LF
Sbjct: 298 DVATMVTVIPLCARQGEVRLGMVFHGLALKLGLCGELKVNSSLLDMYSKCGYLCEARVLF 357

Query: 97  EEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAM-IAGYVECCMMGEAI 155
           +   E+NV+SWNSM+ G  ++ +   A ++   M +++ +  N + +   +  C      
Sbjct: 358 D-TNEKNVISWNSMIGGYSKDRDFRGAFELLRKMQMEDKVKVNEVTLLNVLPVCEEEIQF 416

Query: 156 VLFEEME---------ERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGG 206
           +  +E+          + + +   + ++GY + G +     +F  M  K V SW A+IGG
Sbjct: 417 LKLKEIHGYALRHGFIQSDELVANAFVAGYAKCGSLHYAEGVFCGMESKMVSSWNALIGG 476

Query: 207 FAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVR-- 264
              NGF +++L L++ M+G   +G   ++ +  S+++   R   L   + +  ++     
Sbjct: 477 HVQNGFPRKALDLYLLMRG---SGLEPDLFTIASLLSACARLKSLSCGKEIHGSMLRNGF 533

Query: 265 --DEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFME 322
             DE    S++  Y+  G++  A   F NM +++ V W  MI+G  QNE   +A  +F +
Sbjct: 534 ELDEFICISLVSLYVQCGKILLAKLFFDNMEEKNLVCWNTMINGFSQNEFPFDALDMFHQ 593

Query: 323 MRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGV 382
           M +  + P   +     GA    + + LG+++HC  +K+       +   LI MYAKCG 
Sbjct: 594 MLSSKIWPDEISIIGALGACSQVSALRLGKELHCFAVKSHLTEHSFVTCSLIDMYAKCGC 653

Query: 383 IDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSA 442
           ++ + NIF  +  +  V+WN ++ G+  HG   + +++F+SM  +G  P+SVTF+ +L+A
Sbjct: 654 MEQSQNIFDRVHLKGEVTWNVLITGYGIHGHGRKAIELFKSMQNAGFRPDSVTFIALLTA 713

Query: 443 CSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHR 502
           C+HAGLV+ G E    M  ++ I+P  EHY  ++++LGRAG++ EA E V  LP +PD R
Sbjct: 714 CNHAGLVAEGLEYLGQMQSLFGIKPKLEHYACVVDMLGRAGRLNEALELVNELPDKPDSR 773

Query: 503 IWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDM 562
           IW +LL +C     + +I E  A +LLEL P  A  +V++ N YA  G+  E  K+R  M
Sbjct: 774 IWSSLLSSCRNYR-DLDIGEKVANKLLELGPDKAENYVLISNFYARLGKWDEVRKMRQRM 832

Query: 563 GLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
              G++K  GCSW+   G +  FL GD+   Q  +I
Sbjct: 833 KEIGLQKDAGCSWIEIGGKVSRFLVGDESLLQSMKI 868



 Score =  155 bits (393), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 145/568 (25%), Positives = 253/568 (44%), Gaps = 62/568 (10%)

Query: 1   MSERNHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSE 60
           +S   H ++ VV +T  +T YS      ++  +F    ++N+  +NA+LSG+L+N    +
Sbjct: 119 ISTSPHFQNDVVLITRLVTMYSICDSPYDSCLVFNASRRKNLFLWNALLSGYLRNSLFRD 178

Query: 61  ARRLFEEM-------PER---------------------------------NVVSWTAMI 80
           A  +F EM       P+                                  +V    A+I
Sbjct: 179 AVFVFVEMISLTEFVPDNFTLPCVIKACVGVYDVRLGEAVHGFALKTKVLSDVFVGNALI 238

Query: 81  CGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKN---VIS 137
                 G V  A K+F++MP+RN+VSWNS++   + NG   E+  +F  +   +   +  
Sbjct: 239 AMYGKFGFVESAVKVFDKMPQRNLVSWNSVMYACLENGVFEESYGLFKGLLNGDEGLMPD 298

Query: 138 WNAMIAGYVECCMMGEAIV--LFEEMEER-----NVVTWTSMISGYCRAGEVEEGYCLFR 190
              M+     C   GE  +  +F  +  +      +   +S++  Y + G + E   LF 
Sbjct: 299 VATMVTVIPLCARQGEVRLGMVFHGLALKLGLCGELKVNSSLLDMYSKCGYLCEARVLF- 357

Query: 191 RMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSM--INGYIRF 248
               KNV+SW +MIGG++ +   + +  L  +M+ + D      V   N +      I+F
Sbjct: 358 DTNEKNVISWNSMIGGYSKDRDFRGAFELLRKMQ-MEDKVKVNEVTLLNVLPVCEEEIQF 416

Query: 249 GRLEEAQN--LFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISG 306
            +L+E     L       DE+   + + GY   G +  A  +F  M  +   +W A+I G
Sbjct: 417 LKLKEIHGYALRHGFIQSDELVANAFVAGYAKCGSLHYAEGVFCGMESKMVSSWNALIGG 476

Query: 307 LVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESD 366
            VQN    +A  L++ MR  G+ P   T + L  A     ++  G++IH  +++   E D
Sbjct: 477 HVQNGFPRKALDLYLLMRGSGLEPDLFTIASLLSACARLKSLSCGKEIHGSMLRNGFELD 536

Query: 367 LILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLE 426
             +   L+S+Y +CG I  A   F NM  ++LV WN+M+ GFS +    + L +F  ML 
Sbjct: 537 EFICISLVSLYVQCGKILLAKLFFDNMEEKNLVCWNTMINGFSQNEFPFDALDMFHQMLS 596

Query: 427 SGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYV--SMINLLGRAGK 484
           S   P+ ++ +G L ACS    +  G EL    F V K       +V  S+I++  + G 
Sbjct: 597 SKIWPDEISIIGALGACSQVSALRLGKEL--HCFAV-KSHLTEHSFVTCSLIDMYAKCGC 653

Query: 485 IKEAEEFVLRLPFEPDHRIWGALLGACG 512
           +++++    R+  + +   W  L+   G
Sbjct: 654 MEQSQNIFDRVHLKGE-VTWNVLITGYG 680



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 63/223 (28%), Positives = 111/223 (49%), Gaps = 9/223 (4%)

Query: 235 VQSCNSMINGYIRFGRLEEAQNLFDTVP--VRDEISWTSMIDGYLSVGQVSNAYYLFHNM 292
           +Q C    N  I  GR  +  N   T P    D +  T ++  Y       ++  +F+  
Sbjct: 100 LQLCGEYKN--IEIGR--KIHNFISTSPHFQNDVVLITRLVTMYSICDSPYDSCLVFNAS 155

Query: 293 PDRDAVAWTAMISGLVQNELFVEATYLFMEMRA-HGVPPLNATFSVLFGAAGATANIDLG 351
             ++   W A++SG ++N LF +A ++F+EM +     P N T   +  A     ++ LG
Sbjct: 156 RRKNLFLWNALLSGYLRNSLFRDAVFVFVEMISLTEFVPDNFTLPCVIKACVGVYDVRLG 215

Query: 352 RQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHH 411
             +H   +KT+  SD+ + N LI+MY K G +++A  +F  M  R+LVSWNS++     +
Sbjct: 216 EAVHGFALKTKVLSDVFVGNALIAMYGKFGFVESAVKVFDKMPQRNLVSWNSVMYACLEN 275

Query: 412 GLANETLKVFESML--ESGTHPNSVTFLGILSACSHAGLVSRG 452
           G+  E+  +F+ +L  + G  P+  T + ++  C+  G V  G
Sbjct: 276 GVFEESYGLFKGLLNGDEGLMPDVATMVTVIPLCARQGEVRLG 318



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 85/337 (25%), Positives = 152/337 (45%), Gaps = 20/337 (5%)

Query: 120 LNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEME---ERNVVTWTSMISGY 176
           LN+     NS P K +I     + G  +   +G  I  F       + +VV  T +++ Y
Sbjct: 81  LNDVVSSSNSKP-KQLIGLLLQLCGEYKNIEIGRKIHNFISTSPHFQNDVVLITRLVTMY 139

Query: 177 CRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGIC----DNGN- 231
                  +   +F    RKN+  W A++ G+  N   ++++ +F+EM  +     DN   
Sbjct: 140 SICDSPYDSCLVFNASRRKNLFLWNALLSGYLRNSLFRDAVFVFVEMISLTEFVPDNFTL 199

Query: 232 NCNVQSCNSMINGYIRFGRLEEAQNLF--DTVPVRDEISWTSMIDGYLSVGQVSNAYYLF 289
            C +++C  + +      RL EA + F   T  + D     ++I  Y   G V +A  +F
Sbjct: 200 PCVIKACVGVYD-----VRLGEAVHGFALKTKVLSDVFVGNALIAMYGKFGFVESAVKVF 254

Query: 290 HNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMR--AHGVPPLNATFSVLFGAAGATAN 347
             MP R+ V+W +++   ++N +F E+  LF  +     G+ P  AT   +         
Sbjct: 255 DKMPQRNLVSWNSVMYACLENGVFEESYGLFKGLLNGDEGLMPDVATMVTVIPLCARQGE 314

Query: 348 IDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMG 407
           + LG   H + +K     +L + + L+ MY+KCG +  A  +F +   ++++SWNSM+ G
Sbjct: 315 VRLGMVFHGLALKLGLCGELKVNSSLLDMYSKCGYLCEARVLF-DTNEKNVISWNSMIGG 373

Query: 408 FSHHGLANETLKVFESM-LESGTHPNSVTFLGILSAC 443
           +S         ++   M +E     N VT L +L  C
Sbjct: 374 YSKDRDFRGAFELLRKMQMEDKVKVNEVTLLNVLPVC 410



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 48/183 (26%), Positives = 89/183 (48%), Gaps = 14/183 (7%)

Query: 16  SSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVS 75
           S ++ Y + G I  AK  F  M ++N+V +N M++GF QN    +A  +F +M    +  
Sbjct: 542 SLVSLYVQCGKILLAKLFFDNMEEKNLVCWNTMINGFSQNEFPFDALDMFHQMLSSKIWP 601

Query: 76  WTAMICGLADAGRVCEARKLFEE---------MPERNVVSWNSMVVGLIRNGELNEARKV 126
               I G   A     A +L +E         + E + V+  S++    + G + +++ +
Sbjct: 602 DEISIIGALGACSQVSALRLGKELHCFAVKSHLTEHSFVTC-SLIDMYAKCGCMEQSQNI 660

Query: 127 FNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEER----NVVTWTSMISGYCRAGEV 182
           F+ + +K  ++WN +I GY       +AI LF+ M+      + VT+ ++++    AG V
Sbjct: 661 FDRVHLKGEVTWNVLITGYGIHGHGRKAIELFKSMQNAGFRPDSVTFIALLTACNHAGLV 720

Query: 183 EEG 185
            EG
Sbjct: 721 AEG 723


>gi|225440783|ref|XP_002275884.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g37570 [Vitis vinifera]
          Length = 561

 Score =  308 bits (790), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 178/492 (36%), Positives = 269/492 (54%), Gaps = 19/492 (3%)

Query: 95  LFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMP----IKNVISWNAMIAGYVECCM 150
           +F  +   + V WN+ + G   N  ++    +F  M     + +  ++ ++I    + C 
Sbjct: 79  VFNGVSSPSTVLWNTYIKGYSENYSVSLTVSLFIRMKRSDAVPDKFTYPSLIKACSKVCG 138

Query: 151 MGEAIVLFEEMEER-----NVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIG 205
           + E +  F     R     +V   TS+I  Y + GE+     +F  M  +NVVSWTAMI 
Sbjct: 139 VKEGVA-FHGSAVRCGVGGDVFVMTSLIDLYGKCGEILCARKVFDEMGERNVVSWTAMIA 197

Query: 206 GFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRD 265
           G+A       S    +E + + D     N  S N++I+GY++ G L  A+ +FD +P R+
Sbjct: 198 GYA-------SFSDLVEARKLFDEMPEKNAVSWNAIISGYVKCGDLRSARKMFDEMPHRN 250

Query: 266 EISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRA 325
            +S+T+MIDGY   G +++A ++F   P+RD VAW+A+ISG VQN    EA  +F+EM +
Sbjct: 251 VVSFTTMIDGYAKSGDMASARFVFEEAPERDVVAWSALISGYVQNGQPNEAVKIFLEMCS 310

Query: 326 HGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLI-LENCLISMYAKCGVID 384
             V P       L  A     +++L + +   + K+  +     +   LI M AKCG +D
Sbjct: 311 RNVKPDEFIMVSLMSACSQMGSLELAKWVDDYVRKSSIDVHRAHVIAALIDMNAKCGSMD 370

Query: 385 NAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACS 444
            A  +F  M  RDL+S+ SM+ G S HG   + + +F  ML  G  P+ V F  IL+ACS
Sbjct: 371 RATKLFEEMPKRDLISYCSMMQGLSIHGCGPQAVSLFSRMLNEGLTPDDVAFTVILTACS 430

Query: 445 HAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIW 504
            AGLV  G   F +M   Y I P P+HY  M++LLGRAG++KEA E +  +P EP    W
Sbjct: 431 RAGLVDEGCYYFESMKTDYSIVPSPDHYACMVDLLGRAGRLKEAYELLKSMPVEPHAGAW 490

Query: 505 GALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGL 564
           GALLGAC     + E+ E  A +L EL+P NA  +V+L NIYAA+ + ++   LR  M  
Sbjct: 491 GALLGACKL-HCDIELGEVVADQLFELEPQNAGNYVLLSNIYAAAEQWLDVSLLRNKMRE 549

Query: 565 KGVRKVPGCSWL 576
           +G+RK+PGCSW+
Sbjct: 550 RGIRKIPGCSWI 561



 Score =  179 bits (455), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 105/332 (31%), Positives = 176/332 (53%), Gaps = 17/332 (5%)

Query: 72  NVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMP 131
           +V   T++I      G +  ARK+F+EM ERNVVSW +M+ G     +L EARK+F+ MP
Sbjct: 157 DVFVMTSLIDLYGKCGEILCARKVFDEMGERNVVSWTAMIAGYASFSDLVEARKLFDEMP 216

Query: 132 IKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRR 191
            KN +SWNA+I+GYV+C  +  A  +F+EM  RNVV++T+MI GY ++G++     +F  
Sbjct: 217 EKNAVSWNAIISGYVKCGDLRSARKMFDEMPHRNVVSFTTMIDGYAKSGDMASARFVFEE 276

Query: 192 MPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRL 251
            P ++VV+W+A+I G+  NG   E++ +F+EM   C      +     S+++   + G L
Sbjct: 277 APERDVVAWSALISGYVQNGQPNEAVKIFLEM---CSRNVKPDEFIMVSLMSACSQMGSL 333

Query: 252 EEAQNLFD-----TVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISG 306
           E A+ + D     ++ V       ++ID     G +  A  LF  MP RD +++ +M+ G
Sbjct: 334 ELAKWVDDYVRKSSIDVHRAHVIAALIDMNAKCGSMDRATKLFEEMPKRDLISYCSMMQG 393

Query: 307 LVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESD 366
           L  +    +A  LF  M   G+ P +  F+V+  A      +D G    C   ++     
Sbjct: 394 LSIHGCGPQAVSLFSRMLNEGLTPDDVAFTVILTACSRAGLVDEG----CYYFESMKTDY 449

Query: 367 LILEN-----CLISMYAKCGVIDNAYNIFSNM 393
            I+ +     C++ +  + G +  AY +  +M
Sbjct: 450 SIVPSPDHYACMVDLLGRAGRLKEAYELLKSM 481



 Score =  162 bits (409), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 106/342 (30%), Positives = 173/342 (50%), Gaps = 53/342 (15%)

Query: 11  VVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPE 70
           V  +TS I  Y K G I  A+ +F  M +RNVVS+ AM++G+     L EAR+LF+EMPE
Sbjct: 158 VFVMTSLIDLYGKCGEILCARKVFDEMGERNVVSWTAMIAGYASFSDLVEARKLFDEMPE 217

Query: 71  RNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSM 130
           +N VSW A+I G    G +  ARK+F+EMP RNVVS+ +M+ G  ++G++  AR VF   
Sbjct: 218 KNAVSWNAIISGYVKCGDLRSARKMFDEMPHRNVVSFTTMIDGYAKSGDMASARFVFEEA 277

Query: 131 PIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNV----------------------VT 168
           P ++V++W+A+I+GYV+     EA+ +F EM  RNV                        
Sbjct: 278 PERDVVAWSALISGYVQNGQPNEAVKIFLEMCSRNVKPDEFIMVSLMSACSQMGSLELAK 337

Query: 169 WT------------------SMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWN 210
           W                   ++I    + G ++    LF  MP+++++S+ +M+ G + +
Sbjct: 338 WVDDYVRKSSIDVHRAHVIAALIDMNAKCGSMDRATKLFEEMPKRDLISYCSMMQGLSIH 397

Query: 211 GFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDT-------VPV 263
           G   +++ LF  M    + G   +  +   ++    R G ++E    F++       VP 
Sbjct: 398 GCGPQAVSLFSRM---LNEGLTPDDVAFTVILTACSRAGLVDEGCYYFESMKTDYSIVPS 454

Query: 264 RDEISWTSMIDGYLSVGQVSNAYYLFHNMP-DRDAVAWTAMI 304
            D   +  M+D     G++  AY L  +MP +  A AW A++
Sbjct: 455 PDH--YACMVDLLGRAGRLKEAYELLKSMPVEPHAGAWGALL 494



 Score = 75.9 bits (185), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 67/275 (24%), Positives = 116/275 (42%), Gaps = 15/275 (5%)

Query: 278 SVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSV 337
           S+   S    +F+ +     V W   I G  +N        LF+ M+     P   T+  
Sbjct: 69  SLSNFSYTTSVFNGVSSPSTVLWNTYIKGYSENYSVSLTVSLFIRMKRSDAVPDKFTYPS 128

Query: 338 LFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRD 397
           L  A      +  G   H   ++     D+ +   LI +Y KCG I  A  +F  M  R+
Sbjct: 129 LIKACSKVCGVKEGVAFHGSAVRCGVGGDVFVMTSLIDLYGKCGEILCARKVFDEMGERN 188

Query: 398 LVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFN 457
           +VSW +M+ G++      E  K+F+ M E     N+V++  I+S     G +    ++F+
Sbjct: 189 VVSWTAMIAGYASFSDLVEARKLFDEMPEK----NAVSWNAIISGYVKCGDLRSARKMFD 244

Query: 458 AMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGN 517
            M     +      + +MI+   ++G +  A  FV     E D   W AL+   G+ + N
Sbjct: 245 EMPHRNVVS-----FTTMIDGYAKSGDMASA-RFVFEEAPERDVVAWSALIS--GYVQ-N 295

Query: 518 AEIAEHAAKRLLELDPLNA-PAHVVLCNIYAASGR 551
            +  E A K  LE+   N  P   ++ ++ +A  +
Sbjct: 296 GQPNE-AVKIFLEMCSRNVKPDEFIMVSLMSACSQ 329



 Score = 45.1 bits (105), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 33/156 (21%), Positives = 70/156 (44%), Gaps = 8/156 (5%)

Query: 332 NATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFS 391
            ++ S L  A   T+ ++   Q+H  +++     D  + +  +++           ++F+
Sbjct: 25  TSSISTLLKACTTTSTLE---QVHARIIRKGLHQDHFIISQFLTLCNSLSNFSYTTSVFN 81

Query: 392 NMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSR 451
            + S   V WN+ + G+S +   + T+ +F  M  S   P+  T+  ++ ACS    V  
Sbjct: 82  GVSSPSTVLWNTYIKGYSENYSVSLTVSLFIRMKRSDAVPDKFTYPSLIKACSKVCGVKE 141

Query: 452 GWELFNAMFDVYKIQPGPEHYV--SMINLLGRAGKI 485
           G     +     +   G + +V  S+I+L G+ G+I
Sbjct: 142 GVAFHGS---AVRCGVGGDVFVMTSLIDLYGKCGEI 174


>gi|242076924|ref|XP_002448398.1| hypothetical protein SORBIDRAFT_06g026540 [Sorghum bicolor]
 gi|241939581|gb|EES12726.1| hypothetical protein SORBIDRAFT_06g026540 [Sorghum bicolor]
          Length = 865

 Score =  308 bits (790), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 202/711 (28%), Positives = 342/711 (48%), Gaps = 117/711 (16%)

Query: 1   MSERNHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSE 60
           +++  HP   V+     +  Y K G + +A  LF  MP R+V S+N ++SG+ Q+ +   
Sbjct: 63  LTDIAHPN--VITHNVMLNGYVKLGRLSDAVELFGRMPARDVASWNTLMSGYFQSQQYLA 120

Query: 61  ARRLFEEM-------PERNVVSWTAMICG-----------------------------LA 84
           +   F  M       P     ++    CG                             L 
Sbjct: 121 SLESFVSMHRSGDSSPNAFTFAYAMKSCGALGERSLALQLLGMVQKFGSQDDSDVAAALV 180

Query: 85  D----AGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNA 140
           D     G V  A +LF  + E  +   NSM+VG ++   ++ A ++F+SMP ++V+SWN 
Sbjct: 181 DMFVRCGTVDLASRLFVRIKEPTIFCRNSMLVGYVKTYGVDHALELFDSMPERDVVSWNM 240

Query: 141 MIAGYVECCMMGEAIVLFEEMEERNV----VTWTSMISG--------------------- 175
           M++   +   + EA+ +  +M+ + V     T+TS ++                      
Sbjct: 241 MVSALSQSGRVREALDMVVDMQSKGVRLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNL 300

Query: 176 --------------YCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFI 221
                         Y + G  +E   +F  +  +N V+WT +I GF  +G   ES+ LF 
Sbjct: 301 PCIDPYVASALVELYAKCGCFKEAKGVFNSLHDRNNVAWTVLIAGFLQHGCFTESVELFN 360

Query: 222 EMK----------------GICDNGNNC-------------NVQSC---NSMINGYIRFG 249
           +M+                G C   + C              +Q+    NS+I+ Y +  
Sbjct: 361 QMRAELMTLDQFALATLISGCCSRMDLCLGRQLHSLCLKSGQIQAVVVSNSLISMYAKCD 420

Query: 250 RLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQ 309
            L+ A+++F  +  +D +SWTSMI  +  VG ++ A   F  M  ++ + W AM+   +Q
Sbjct: 421 NLQSAESIFRFMNEKDIVSWTSMITAHSQVGNIAKAREFFDGMSTKNVITWNAMLGAYIQ 480

Query: 310 NELFVEATYLFMEMRAH-GVPPLNATFSVLF-GAAGATANIDLGRQIHCVLMKTESESDL 367
           +    +   ++  M +   V P   T+  LF G A   AN  LG QI    +K     D 
Sbjct: 481 HGAEEDGLRMYNVMLSEKDVRPDWVTYVTLFKGCADLGAN-KLGDQIIGRTVKVGLILDT 539

Query: 368 ILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLES 427
            + N +I+MY+KCG I  A  +F  +  +D+VSWN+M+ G+S HG+  + +++F+ +L+ 
Sbjct: 540 SVANAVITMYSKCGRILEARKVFDFLNVKDIVSWNAMITGYSQHGMGKQAIEIFDDILKR 599

Query: 428 GTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKE 487
           G  P+ ++++ +LS CSH+GLV  G   F+ M  V+ I PG EH+  M++LLGRAG + E
Sbjct: 600 GAKPDYISYVAVLSGCSHSGLVQEGKSYFDMMKRVHNISPGLEHFSCMVDLLGRAGHLTE 659

Query: 488 AEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYA 547
           A++ +  +P +P   +WGALL AC    GN E+AE AAK + ELD  ++ +++++  IYA
Sbjct: 660 AKDLIDEMPMKPTAEVWGALLSACKI-HGNNELAELAAKHVFELDSPDSGSYMLMAKIYA 718

Query: 548 ASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
            +G+  +  ++R  M  KG++K PG SW+  N  + +F + D    QV  I
Sbjct: 719 DAGKSDDSAQIRKLMRDKGIKKNPGYSWMEVNNKVHVFKADDVSHPQVIAI 769



 Score =  187 bits (475), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 130/482 (26%), Positives = 233/482 (48%), Gaps = 24/482 (4%)

Query: 28  DEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAG 87
           D  + L   +   NV+++N ML+G+++ GRLS+A  LF  MP R+V SW  ++ G   + 
Sbjct: 57  DARRLLLTDIAHPNVITHNVMLNGYVKLGRLSDAVELFGRMPARDVASWNTLMSGYFQSQ 116

Query: 88  RVCEARKLFEEMPERNVVSWNSMVVGLIRN--GELNEAR---------KVFNSMPIKNVI 136
           +   + + F  M      S N+          G L E           + F S    +V 
Sbjct: 117 QYLASLESFVSMHRSGDSSPNAFTFAYAMKSCGALGERSLALQLLGMVQKFGSQDDSDVA 176

Query: 137 SWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKN 196
           +  A++  +V C  +  A  LF  ++E  +    SM+ GY +   V+    LF  MP ++
Sbjct: 177 A--ALVDMFVRCGTVDLASRLFVRIKEPTIFCRNSMLVGYVKTYGVDHALELFDSMPERD 234

Query: 197 VVSWTAMIGGFAWNGFHKESLLLFIEM--KGICDNGN--NCNVQSCNSMINGYIRFGRLE 252
           VVSW  M+   + +G  +E+L + ++M  KG+  +      ++ +C  + +  +R+G+  
Sbjct: 235 VVSWNMMVSALSQSGRVREALDMVVDMQSKGVRLDSTTYTSSLTACARLSS--LRWGKQL 292

Query: 253 EAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNEL 312
            AQ +   +P  D    +++++ Y   G    A  +F+++ DR+ VAWT +I+G +Q+  
Sbjct: 293 HAQ-VIRNLPCIDPYVASALVELYAKCGCFKEAKGVFNSLHDRNNVAWTVLIAGFLQHGC 351

Query: 313 FVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENC 372
           F E+  LF +MRA  +       + L     +  ++ LGRQ+H + +K+     +++ N 
Sbjct: 352 FTESVELFNQMRAELMTLDQFALATLISGCCSRMDLCLGRQLHSLCLKSGQIQAVVVSNS 411

Query: 373 LISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPN 432
           LISMYAKC  + +A +IF  M  +D+VSW SM+   S  G   +  + F+ M    +  N
Sbjct: 412 LISMYAKCDNLQSAESIFRFMNEKDIVSWTSMITAHSQVGNIAKAREFFDGM----STKN 467

Query: 433 SVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFV 492
            +T+  +L A    G    G  ++N M     ++P    YV++       G  K  ++ +
Sbjct: 468 VITWNAMLGAYIQHGAEEDGLRMYNVMLSEKDVRPDWVTYVTLFKGCADLGANKLGDQII 527

Query: 493 LR 494
            R
Sbjct: 528 GR 529



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 100/406 (24%), Positives = 193/406 (47%), Gaps = 5/406 (1%)

Query: 108 NSMVVGLIRNGELNEARKVF-NSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNV 166
           N+++   +  G L +AR++    +   NVI+ N M+ GYV+   + +A+ LF  M  R+V
Sbjct: 43  NTLLHAYLSCGALPDARRLLLTDIAHPNVITHNVMLNGYVKLGRLSDAVELFGRMPARDV 102

Query: 167 VTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWN--GFHKESLLLFIEMK 224
            +W +++SGY ++ +       F  M R    S  A    +A    G   E  L    + 
Sbjct: 103 ASWNTLMSGYFQSQQYLASLESFVSMHRSGDSSPNAFTFAYAMKSCGALGERSLALQLLG 162

Query: 225 GICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSN 284
            +   G+  +     ++++ ++R G ++ A  LF  +         SM+ GY+    V +
Sbjct: 163 MVQKFGSQDDSDVAAALVDMFVRCGTVDLASRLFVRIKEPTIFCRNSMLVGYVKTYGVDH 222

Query: 285 AYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGA 344
           A  LF +MP+RD V+W  M+S L Q+    EA  + ++M++ GV   + T++    A   
Sbjct: 223 ALELFDSMPERDVVSWNMMVSALSQSGRVREALDMVVDMQSKGVRLDSTTYTSSLTACAR 282

Query: 345 TANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSM 404
            +++  G+Q+H  +++     D  + + L+ +YAKCG    A  +F+++  R+ V+W  +
Sbjct: 283 LSSLRWGKQLHAQVIRNLPCIDPYVASALVELYAKCGCFKEAKGVFNSLHDRNNVAWTVL 342

Query: 405 VMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYK 464
           + GF  HG   E++++F  M       +      ++S C     +  G +L +      +
Sbjct: 343 IAGFLQHGCFTESVELFNQMRAELMTLDQFALATLISGCCSRMDLCLGRQLHSLCLKSGQ 402

Query: 465 IQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGA 510
           IQ       S+I++  +   ++ AE  + R   E D   W +++ A
Sbjct: 403 IQAVVVSN-SLISMYAKCDNLQSAES-IFRFMNEKDIVSWTSMITA 446


>gi|414887370|tpg|DAA63384.1| TPA: hypothetical protein ZEAMMB73_689576 [Zea mays]
          Length = 802

 Score =  308 bits (789), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 187/613 (30%), Positives = 322/613 (52%), Gaps = 32/613 (5%)

Query: 12  VHLTSSITKYSKRGFIDEAKALFQLMP--QRNVVSYNAMLSGFLQNGRLSEARRLFEEMP 69
           V  TS +  Y+    +  A + F  +P  +R+ V +NA++S + +    + A  +F  + 
Sbjct: 89  VSATSLVAAYAAADRLPAAVSFFDAVPPARRDTVLHNAVISAYARASHAAPAVAVFRSLL 148

Query: 70  ERNVV-----SWTAMIC--GLADAGRVCEARKLFEEMPERNV---VSWNSMVVGLIRNGE 119
               +     S+TA++   G      V    +L   + +      +S  + +V L    E
Sbjct: 149 ASGSLRPDDYSFTALLSAGGHLPNISVRHCAQLHCSVLKSGAGGALSVCNALVALYMKCE 208

Query: 120 LNEA----RKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISG 175
             EA    RKV + MP K+ ++W  M+ GYV    +G A  +FEE++ +  V W +MISG
Sbjct: 209 SPEATRDARKVLDEMPNKDDLTWTTMVVGYVRRGDVGAARSVFEEVDGKFDVVWNAMISG 268

Query: 176 YCRAGEVEEGYCLFRRMPRK----------NVVSWTAMIGGFAWNGFHKESLLLFIEMKG 225
           Y  +G   E + LFRRM  +          +V+S  A +G FA +G      ++ ++   
Sbjct: 269 YVHSGMAVEAFELFRRMVLERVPLDEFTFTSVLSACANVGLFA-HGKSVHGQIIRLQPNF 327

Query: 226 ICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNA 285
           + +     N    N+++  Y + G +  A+ +FD + ++D +SW +++ GY+    +  A
Sbjct: 328 VPEAALPVN----NALVTFYSKCGNIAVARRIFDNMTLKDVVSWNTILSGYVESSCLDKA 383

Query: 286 YYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGAT 345
             +F  MP ++ ++W  M+SG V      +A  LF +MR+  V P + T++    A G  
Sbjct: 384 VEVFEEMPYKNELSWMVMVSGYVHGGFAEDALKLFNKMRSENVKPCDYTYAGAIAACGEL 443

Query: 346 ANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMV 405
             +  G+Q+H  +++   E      N LI+MYA+CG +  A+ +F  M + D VSWN+M+
Sbjct: 444 GALKHGKQLHGHIVQLGFEGSNSAGNALITMYARCGAVKEAHLMFLVMPNIDSVSWNAMI 503

Query: 406 MGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKI 465
                HG   E L++F+ M+  G +P+ ++FL +L+AC+H+GLV  G+  F +M   + I
Sbjct: 504 SALGQHGHGREALELFDRMVAEGIYPDRISFLTVLTACNHSGLVDEGFRYFESMKRDFGI 563

Query: 466 QPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAA 525
            PG +HY  +I+LLGRAG+I EA + +  +PFEP   IW A+L  C    G+ E+  HAA
Sbjct: 564 IPGEDHYTRLIDLLGRAGRIGEARDLIKTMPFEPTPSIWEAILSGCR-TSGDMELGAHAA 622

Query: 526 KRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMF 585
            +L ++ P +   +++L N Y+A+G  V+  ++R  M  +GV+K PGCSW+     + +F
Sbjct: 623 DQLFKMTPQHDGTYILLSNTYSAAGCWVDAARVRKLMRDRGVKKEPGCSWIEAGNKVHVF 682

Query: 586 LSGDKIPAQVAEI 598
           L GD    +  E+
Sbjct: 683 LVGDTKHPEAHEV 695



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 70/280 (25%), Positives = 120/280 (42%), Gaps = 46/280 (16%)

Query: 241 MINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPD--RDAV 298
           +I+ Y     L  A  LF   P    +S TS++  Y +  ++  A   F  +P   RD V
Sbjct: 65  LIHLYTLSRDLPAAATLFCADPC--PVSATSLVAAYAAADRLPAAVSFFDAVPPARRDTV 122

Query: 299 AWTAMISGLVQNELFVEATYLFMEMRAHG-VPPLNATFSVLFGAAGATANIDLGR--QIH 355
              A+IS   +      A  +F  + A G + P + +F+ L  A G   NI +    Q+H
Sbjct: 123 LHNAVISAYARASHAAPAVAVFRSLLASGSLRPDDYSFTALLSAGGHLPNISVRHCAQLH 182

Query: 356 CVLMKTESESDLILENCLISMYAKC----------------------------------G 381
           C ++K+ +   L + N L+++Y KC                                  G
Sbjct: 183 CSVLKSGAGGALSVCNALVALYMKCESPEATRDARKVLDEMPNKDDLTWTTMVVGYVRRG 242

Query: 382 VIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILS 441
            +  A ++F  +  +  V WN+M+ G+ H G+A E  ++F  M+      +  TF  +LS
Sbjct: 243 DVGAARSVFEEVDGKFDVVWNAMISGYVHSGMAVEAFELFRRMVLERVPLDEFTFTSVLS 302

Query: 442 ACSHAGLVSRGWELFNAMFDVYKIQPG--PEHYVSMINLL 479
           AC++ GL + G  +      + ++QP   PE  + + N L
Sbjct: 303 ACANVGLFAHGKSVHG---QIIRLQPNFVPEAALPVNNAL 339



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 79/335 (23%), Positives = 143/335 (42%), Gaps = 51/335 (15%)

Query: 11  VVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPE 70
           VV   + ++ Y +   +D+A  +F+ MP +N +S+  M+SG++  G   +A +LF +M  
Sbjct: 364 VVSWNTILSGYVESSCLDKAVEVFEEMPYKNELSWMVMVSGYVHGGFAEDALKLFNKMRS 423

Query: 71  RNV----VSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLI----RNGELNE 122
            NV     ++   I    + G +   ++L   + +      NS    LI    R G + E
Sbjct: 424 ENVKPCDYTYAGAIAACGELGALKHGKQLHGHIVQLGFEGSNSAGNALITMYARCGAVKE 483

Query: 123 ARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNV----VTWTSMISGYCR 178
           A  +F  MP  + +SWNAMI+   +     EA+ LF+ M    +    +++ ++++    
Sbjct: 484 AHLMFLVMPNIDSVSWNAMISALGQHGHGREALELFDRMVAEGIYPDRISFLTVLTACNH 543

Query: 179 AGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSC 238
           +G V+EG+  F  M R        +I G       ++     I++ G             
Sbjct: 544 SGLVDEGFRYFESMKRD-----FGIIPG-------EDHYTRLIDLLG------------- 578

Query: 239 NSMINGYIRFGRLEEAQNLFDTVPVRDEIS-WTSMIDGYLSVGQVS----NAYYLFHNMP 293
                   R GR+ EA++L  T+P     S W +++ G  + G +      A  LF   P
Sbjct: 579 --------RAGRIGEARDLIKTMPFEPTPSIWEAILSGCRTSGDMELGAHAADQLFKMTP 630

Query: 294 DRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGV 328
             D   +  + +       +V+A  +   MR  GV
Sbjct: 631 QHDGT-YILLSNTYSAAGCWVDAARVRKLMRDRGV 664


>gi|168017714|ref|XP_001761392.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162687398|gb|EDQ73781.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 833

 Score =  308 bits (789), Expect = 6e-81,   Method: Compositional matrix adjust.
 Identities = 194/639 (30%), Positives = 324/639 (50%), Gaps = 55/639 (8%)

Query: 11  VVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMP- 69
           +  L + I  YS  G + EA+ +F  +  + VV++NA+++G+ Q G + EA  LF +M  
Sbjct: 92  IYELNTLIKLYSICGNVTEARQIFDSVENKTVVTWNALIAGYAQVGHVKEAFALFRQMVD 151

Query: 70  ---ERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVS----WNSMVVGLIRNGELNE 122
              E +++++ +++   +    +   +++  ++     VS      ++V   ++ G +++
Sbjct: 152 EGLEPSIITFLSVLDACSSPAGLNWGKEVHAQVVTAGFVSDFRIGTALVSMYVKGGSMDD 211

Query: 123 ARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEE------------------- 163
           AR+VF+ + I++V ++N M+ GY +     +A  LF  M++                   
Sbjct: 212 ARQVFDGLHIRDVSTFNVMVGGYAKSGDWEKAFELFYRMQQVGLKPNKISFLSILDGCWT 271

Query: 164 --------------------RNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAM 203
                                ++   TS+I  Y   G +E    +F  M  ++VVSWT M
Sbjct: 272 PEALAWGKAVHAQCMNAGLVDDIRVATSLIRMYTTCGSIEGARRVFDNMKVRDVVSWTVM 331

Query: 204 IGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPV 263
           I G+A NG  +++  LF  M+   + G   +  +   ++N       L  A+ +   V +
Sbjct: 332 IEGYAENGNIEDAFGLFATMQ---EEGIQPDRITYMHIMNACAISANLNHAREIHSQVDI 388

Query: 264 ----RDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYL 319
                D +  T+++  Y   G + +A  +F  MP RD V+W+AMI   V+N    EA   
Sbjct: 389 AGFGTDLLVSTALVHMYAKCGAIKDARQVFDAMPRRDVVSWSAMIGAYVENGYGTEAFET 448

Query: 320 FMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAK 379
           F  M+   + P   T+  L  A G    +D+G +I+   +K +  S + L N LI M AK
Sbjct: 449 FHLMKRSNIEPDGVTYINLLNACGHLGALDVGMEIYTQAIKADLVSHVPLGNALIIMNAK 508

Query: 380 CGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGI 439
            G ++ A  IF  MV RD+++WN+M+ G+S HG A E L +F+ ML+    PNSVTF+G+
Sbjct: 509 HGSVERARYIFDTMVRRDVITWNAMIGGYSLHGNAREALYLFDRMLKERFRPNSVTFVGV 568

Query: 440 LSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEP 499
           LSACS AG V  G   F  + +   I P  + Y  M++LLGRAG++ EAE  +  +P +P
Sbjct: 569 LSACSRAGFVDEGRRFFTYLLEGRGIVPTVKLYGCMVDLLGRAGELDEAELLIKSMPVKP 628

Query: 500 DHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLR 559
              IW +LL AC    GN ++AE AA+R L +DP +   +V L ++YAA+G      K+R
Sbjct: 629 TSSIWSSLLVACRI-HGNLDVAERAAERCLMIDPYDGAVYVQLSHMYAAAGMWENVAKVR 687

Query: 560 MDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
             M  +G+RK  GC+W+   G +  F+  D+    V EI
Sbjct: 688 KVMESRGIRKEQGCTWIEVAGKVHTFVVEDRSHPLVGEI 726



 Score =  196 bits (499), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 145/548 (26%), Positives = 256/548 (46%), Gaps = 55/548 (10%)

Query: 39  QRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEE 98
           Q N+   N ++  +   G ++EAR++F+ +  + VV+W A+I G A  G V EA  LF +
Sbjct: 89  QLNIYELNTLIKLYSICGNVTEARQIFDSVENKTVVTWNALIAGYAQVGHVKEAFALFRQ 148

Query: 99  MP----ERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVIS----WNAMIAGYVECCM 150
           M     E +++++ S++        LN  ++V   +     +S      A+++ YV+   
Sbjct: 149 MVDEGLEPSIITFLSVLDACSSPAGLNWGKEVHAQVVTAGFVSDFRIGTALVSMYVKGGS 208

Query: 151 MGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMP----RKNVVSWTAMIGG 206
           M +A  +F+ +  R+V T+  M+ GY ++G+ E+ + LF RM     + N +S+ +++ G
Sbjct: 209 MDDARQVFDGLHIRDVSTFNVMVGGYAKSGDWEKAFELFYRMQQVGLKPNKISFLSILDG 268

Query: 207 FAWNGFHKESLLLFIEMKGICDN-GNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRD 265
             W     E+L     +   C N G   +++   S+I  Y   G +E A+ +FD + VRD
Sbjct: 269 -CWT---PEALAWGKAVHAQCMNAGLVDDIRVATSLIRMYTTCGSIEGARRVFDNMKVRD 324

Query: 266 EISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRA 325
            +SWT MI+GY   G + +A+ LF  M +                               
Sbjct: 325 VVSWTVMIEGYAENGNIEDAFGLFATMQE------------------------------- 353

Query: 326 HGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDN 385
            G+ P   T+  +  A   +AN++  R+IH  +      +DL++   L+ MYAKCG I +
Sbjct: 354 EGIQPDRITYMHIMNACAISANLNHAREIHSQVDIAGFGTDLLVSTALVHMYAKCGAIKD 413

Query: 386 AYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSH 445
           A  +F  M  RD+VSW++M+  +  +G   E  + F  M  S   P+ VT++ +L+AC H
Sbjct: 414 ARQVFDAMPRRDVVSWSAMIGAYVENGYGTEAFETFHLMKRSNIEPDGVTYINLLNACGH 473

Query: 446 AGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWG 505
            G +  G E++        +   P    ++I +  + G ++ A  ++       D   W 
Sbjct: 474 LGALDVGMEIYTQAIKADLVSHVPLGN-ALIIMNAKHGSVERA-RYIFDTMVRRDVITWN 531

Query: 506 ALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGR--HVEEHKLRMDMG 563
           A++G      GNA  A +   R+L+      P  V    + +A  R   V+E +      
Sbjct: 532 AMIGGYSL-HGNAREALYLFDRMLK--ERFRPNSVTFVGVLSACSRAGFVDEGRRFFTYL 588

Query: 564 LKGVRKVP 571
           L+G   VP
Sbjct: 589 LEGRGIVP 596



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 60/218 (27%), Positives = 100/218 (45%), Gaps = 31/218 (14%)

Query: 226 ICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNA 285
           I   G   N+   N++I  Y   G + EA+ +FD+V  +  ++W ++I GY  VG V  A
Sbjct: 83  IIQGGRQLNIYELNTLIKLYSICGNVTEARQIFDSVENKTVVTWNALIAGYAQVGHVKEA 142

Query: 286 YYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGAT 345
           + LF  M D                                G+ P   TF  +  A  + 
Sbjct: 143 FALFRQMVD-------------------------------EGLEPSIITFLSVLDACSSP 171

Query: 346 ANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMV 405
           A ++ G+++H  ++     SD  +   L+SMY K G +D+A  +F  +  RD+ ++N MV
Sbjct: 172 AGLNWGKEVHAQVVTAGFVSDFRIGTALVSMYVKGGSMDDARQVFDGLHIRDVSTFNVMV 231

Query: 406 MGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSAC 443
            G++  G   +  ++F  M + G  PN ++FL IL  C
Sbjct: 232 GGYAKSGDWEKAFELFYRMQQVGLKPNKISFLSILDGC 269



 Score = 72.0 bits (175), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 35/116 (30%), Positives = 65/116 (56%), Gaps = 1/116 (0%)

Query: 334 TFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNM 393
           T+  LF       +  LG+Q+   +++   + ++   N LI +Y+ CG +  A  IF ++
Sbjct: 59  TYVKLFQRCTELRDAALGKQVRDHIIQGGRQLNIYELNTLIKLYSICGNVTEARQIFDSV 118

Query: 394 VSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSH-AGL 448
            ++ +V+WN+++ G++  G   E   +F  M++ G  P+ +TFL +L ACS  AGL
Sbjct: 119 ENKTVVTWNALIAGYAQVGHVKEAFALFRQMVDEGLEPSIITFLSVLDACSSPAGL 174


>gi|357127388|ref|XP_003565363.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like [Brachypodium distachyon]
          Length = 814

 Score =  308 bits (789), Expect = 6e-81,   Method: Compositional matrix adjust.
 Identities = 210/662 (31%), Positives = 314/662 (47%), Gaps = 90/662 (13%)

Query: 25  GFIDEAKALFQLMPQRN-VVSYNAMLSGFLQNGRLSEARRLFEEMPE--RNVVSWTAMIC 81
           G + +A+ALF  MP RN   S N MLSG+ ++G+LS A  LF   P   R+ V+WT MI 
Sbjct: 48  GRLAQARALFDQMPHRNNAFSLNRMLSGYSRSGQLSAAHHLFLSSPPHLRDAVTWTVMIG 107

Query: 82  GLADA--GRVCEARKLFEEM------PER------------------------------- 102
             A A   R  +A  LF +M      P+R                               
Sbjct: 108 AFASAPGARASDAVSLFRDMLREGVAPDRVTVATVLNLPPASGGTAAAIIIASLHPFALK 167

Query: 103 ------NVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIV 156
                 NVV  N+++    ++G L  AR+VF  MP ++ +++NAM+ G  +     EA+ 
Sbjct: 168 LGLLHSNVVVCNTLLDAYCKHGLLAAARRVFQEMPHRDSVTYNAMMMGCSKEGSHAEALD 227

Query: 157 LFEEMEER--------------------------------------NVVTWTSMISGYCR 178
           LF  M  +                                      NV    S++  Y +
Sbjct: 228 LFAAMRRKGLAATRFTFSTVLTVATGVGDLCLGRQVHGLVARATSSNVFVNNSLLDFYSK 287

Query: 179 AGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSC 238
              ++E   LF  M  ++ VS+  MI G+AWN      L LF EM+ +  +       S 
Sbjct: 288 CDCLDEMKKLFHEMIERDNVSYNVMIAGYAWNRCASIVLRLFREMQSLSFDRQALPYASL 347

Query: 239 NSMING--YIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRD 296
            S+     +I  G+   AQ +   +   D +   ++ID Y   G +  A   F N  D+ 
Sbjct: 348 LSVAGSVPHIGIGKQIHAQLVLLGLSSEDLVG-NALIDMYSKCGMLDAAKTNFINKNDKT 406

Query: 297 AVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHC 356
            V+WTAMI+G VQN    EA  LF  MR  G+ P  ATFS    A+   A I LGRQ+H 
Sbjct: 407 GVSWTAMITGCVQNGQQEEALQLFCGMRRAGLSPDRATFSSTIKASSNLAMIGLGRQLHS 466

Query: 357 VLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANE 416
            L+++   S +   + L+ MY KCG +D A   F  M  R+ +SWN+++  ++H+G A  
Sbjct: 467 YLIRSGHMSSVFSGSALLDMYTKCGCLDEALQTFDEMPERNSISWNAVISAYAHYGQAKN 526

Query: 417 TLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMI 476
            +K+FE ML  G  P+SVTFL +LSACSH GL     + F  M   Y I P  EHY  +I
Sbjct: 527 AIKMFEGMLCYGFKPDSVTFLSVLSACSHNGLAEECMKYFELMEYEYGISPWKEHYSCVI 586

Query: 477 NLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNA 536
           + LGR G+  + +E +  +PFE D  IW ++L +C    GN ++A  AA++L  +   +A
Sbjct: 587 DTLGRVGRFDKVQEMLGEMPFEDDPIIWSSILHSCR-THGNQDLARVAAEKLFSMGSTDA 645

Query: 537 PAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVA 596
             +V+L NI+A +G+  +   ++  M  +G+RK  G SW+     +  F S D+    + 
Sbjct: 646 TPYVILSNIFAKAGKWEDAAGVKKIMRDRGLRKETGYSWVEVKHKVYSFSSNDQTNPMIT 705

Query: 597 EI 598
           EI
Sbjct: 706 EI 707



 Score =  162 bits (411), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 127/488 (26%), Positives = 220/488 (45%), Gaps = 31/488 (6%)

Query: 46  NAMLSGFLQNGRLSEARRLFEEMPER-NVVSWTAMICGLADAGRVCEARKLFEEMPE--R 102
           N +L   + +GRL++AR LF++MP R N  S   M+ G + +G++  A  LF   P   R
Sbjct: 38  NLLLHSLISSGRLAQARALFDQMPHRNNAFSLNRMLSGYSRSGQLSAAHHLFLSSPPHLR 97

Query: 103 NVVSWNSMVVGLIR--NGELNEARKVFNSM----------PIKNVISWNAMIAGYVECCM 150
           + V+W  M+           ++A  +F  M           +  V++      G     +
Sbjct: 98  DAVTWTVMIGAFASAPGARASDAVSLFRDMLREGVAPDRVTVATVLNLPPASGGTAAAII 157

Query: 151 MG--EAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFA 208
           +       L   +   NVV   +++  YC+ G +     +F+ MP ++ V++ AM+ G +
Sbjct: 158 IASLHPFALKLGLLHSNVVVCNTLLDAYCKHGLLAAARRVFQEMPHRDSVTYNAMMMGCS 217

Query: 209 WNGFHKESLLLFIEM--KGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDE 266
             G H E+L LF  M  KG+       +     +   G +  GR  +   L       + 
Sbjct: 218 KEGSHAEALDLFAAMRRKGLAATRFTFSTVLTVATGVGDLCLGR--QVHGLVARATSSNV 275

Query: 267 ISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAH 326
               S++D Y     +     LFH M +RD V++  MI+G   N        LF EM++ 
Sbjct: 276 FVNNSLLDFYSKCDCLDEMKKLFHEMIERDNVSYNVMIAGYAWNRCASIVLRLFREMQSL 335

Query: 327 GVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNA 386
                   ++ L   AG+  +I +G+QIH  L+     S+ ++ N LI MY+KCG++D A
Sbjct: 336 SFDRQALPYASLLSVAGSVPHIGIGKQIHAQLVLLGLSSEDLVGNALIDMYSKCGMLDAA 395

Query: 387 YNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHA 446
              F N   +  VSW +M+ G   +G   E L++F  M  +G  P+  TF   + A S+ 
Sbjct: 396 KTNFINKNDKTGVSWTAMITGCVQNGQQEEALQLFCGMRRAGLSPDRATFSSTIKASSNL 455

Query: 447 GLVSRGWELFNAMFDVYKIQPGPEHYV----SMINLLGRAGKIKEAEEFVLRLPFEPDHR 502
            ++  G +L +     Y I+ G    V    +++++  + G + EA +    +P E +  
Sbjct: 456 AMIGLGRQLHS-----YLIRSGHMSSVFSGSALLDMYTKCGCLDEALQTFDEMP-ERNSI 509

Query: 503 IWGALLGA 510
            W A++ A
Sbjct: 510 SWNAVISA 517



 Score =  118 bits (295), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 105/422 (24%), Positives = 173/422 (40%), Gaps = 83/422 (19%)

Query: 11  VVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPE 70
           VV   + +  Y K G +  A+ +FQ MP R+ V+YNAM+ G  + G  +EA  LF  M  
Sbjct: 175 VVVCNTLLDAYCKHGLLAAARRVFQEMPHRDSVTYNAMMMGCSKEGSHAEALDLFAAMRR 234

Query: 71  RNVV----SWTAMICGLADAGRVCEARK---LFEEMPERNVVSWNSMVVGLIRNGELNEA 123
           + +     +++ ++      G +C  R+   L       NV   NS++    +   L+E 
Sbjct: 235 KGLAATRFTFSTVLTVATGVGDLCLGRQVHGLVARATSSNVFVNNSLLDFYSKCDCLDEM 294

Query: 124 RKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEME----ERNVVTWTSMIS----- 174
           +K+F+ M  ++ +S+N MIAGY         + LF EM+    +R  + + S++S     
Sbjct: 295 KKLFHEMIERDNVSYNVMIAGYAWNRCASIVLRLFREMQSLSFDRQALPYASLLSVAGSV 354

Query: 175 ------------------------------GYCRAGEVEEGYCLFRRMPRKNVVSWTAMI 204
                                          Y + G ++     F     K  VSWTAMI
Sbjct: 355 PHIGIGKQIHAQLVLLGLSSEDLVGNALIDMYSKCGMLDAAKTNFINKNDKTGVSWTAMI 414

Query: 205 GGFAWNGFHKESLLLFIEMKG--------------------------------ICDNGNN 232
            G   NG  +E+L LF  M+                                 +  +G+ 
Sbjct: 415 TGCVQNGQQEEALQLFCGMRRAGLSPDRATFSSTIKASSNLAMIGLGRQLHSYLIRSGHM 474

Query: 233 CNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNM 292
            +V S +++++ Y + G L+EA   FD +P R+ ISW ++I  Y   GQ  NA  +F  M
Sbjct: 475 SSVFSGSALLDMYTKCGCLDEALQTFDEMPERNSISWNAVISAYAHYGQAKNAIKMFEGM 534

Query: 293 P----DRDAVAWTAMISGLVQNELFVEATYLFMEMR-AHGVPPLNATFSVLFGAAGATAN 347
                  D+V + +++S    N L  E    F  M   +G+ P    +S +    G    
Sbjct: 535 LCYGFKPDSVTFLSVLSACSHNGLAEECMKYFELMEYEYGISPWKEHYSCVIDTLGRVGR 594

Query: 348 ID 349
            D
Sbjct: 595 FD 596



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/132 (27%), Positives = 69/132 (52%), Gaps = 10/132 (7%)

Query: 21  YSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMP----ERNVVSW 76
           Y+K G +DEA   F  MP+RN +S+NA++S +   G+   A ++FE M     + + V++
Sbjct: 487 YTKCGCLDEALQTFDEMPERNSISWNAVISAYAHYGQAKNAIKMFEGMLCYGFKPDSVTF 546

Query: 77  TAMICGLADAGRVCEARKLFEEMP-ERNVVSWNS----MVVGLIRNGELNEARKVFNSMP 131
            +++   +  G   E  K FE M  E  +  W      ++  L R G  ++ +++   MP
Sbjct: 547 LSVLSACSHNGLAEECMKYFELMEYEYGISPWKEHYSCVIDTLGRVGRFDKVQEMLGEMP 606

Query: 132 IK-NVISWNAMI 142
            + + I W++++
Sbjct: 607 FEDDPIIWSSIL 618


>gi|188509964|gb|ACD56648.1| putative pentatricopeptide repeat protein [Gossypioides kirkii]
          Length = 805

 Score =  308 bits (788), Expect = 7e-81,   Method: Compositional matrix adjust.
 Identities = 175/584 (29%), Positives = 306/584 (52%), Gaps = 48/584 (8%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWT 77
           ++ Y+  G + E + +F  M ++NV  +N M+S + + G   E+  LF+ M E+ +    
Sbjct: 141 VSLYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGI---- 196

Query: 78  AMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNV-I 136
                  +  R   A +LF+++ +R+V+SWNSM+ G + NG      +++  M    + +
Sbjct: 197 -------EGKRPESASELFDKLCDRDVISWNSMISGYVSNGLTERGLEIYKQMMYLGIDV 249

Query: 137 SWNAMIAGYVECC-----MMGEAI--VLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLF 189
               +I+  V C       +G+A+  +  +   ER +    +++  Y + G+++    +F
Sbjct: 250 DLATIISVLVGCANSGTLSLGKAVHSLAIKSTFERRINFSNTLLDMYSKCGDLDGALRVF 309

Query: 190 RRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFG 249
            +M  +NVVSWT+MI G+  +G    ++ L  +M+     G   +V +  S+++   R G
Sbjct: 310 EKMGERNVVSWTSMIAGYTRDGRSDGAIRLLQQME---KEGVKLDVVATTSILHACARSG 366

Query: 250 RLEEAQNLFDTVPVRDEIS----WTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMIS 305
            L+  +++ D +   +  S      +++D Y   G +  A  +F  M  +D ++W  MI 
Sbjct: 367 SLDNGKDVHDYIKANNMESNLFVCNALMDMYTKCGSMDGANSVFSTMVVKDIISWNTMIG 426

Query: 306 GLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESES 365
            L                      P + T + +  A  + + ++ G++IH  +++    S
Sbjct: 427 EL---------------------KPDSRTMACILPACASLSALERGKEIHGYILRNGYSS 465

Query: 366 DLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESML 425
           D  + N L+ +Y KCGV+  A  +F  + S+DLVSW  M+ G+  HG  NE +  F  M 
Sbjct: 466 DRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMISGYGMHGYGNEAIATFNEMR 525

Query: 426 ESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKI 485
           ++G  P+ V+F+ IL ACSH+GL+ +GW  F  M + + I+P  EHY  M++LL R G +
Sbjct: 526 DAGIEPDEVSFISILYACSHSGLLEQGWRFFYIMKNDFNIEPKLEHYACMVDLLSRTGNL 585

Query: 486 KEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNI 545
            +A EF+  LP  PD  IWGALL  C     + E+AE  A+R+ EL+P N   +V+L NI
Sbjct: 586 SKAYEFIETLPIAPDATIWGALLCGCRIYH-DIELAEKVAERVFELEPENTGYYVLLANI 644

Query: 546 YAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGD 589
           YA + +  E  ++R  +G KG+RK PGCSW+   G + +F+SG+
Sbjct: 645 YAEAEKWEEVKRMREKIGKKGLRKNPGCSWIEIKGKVNLFVSGN 688



 Score =  142 bits (357), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 115/447 (25%), Positives = 196/447 (43%), Gaps = 85/447 (19%)

Query: 39  QRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEE 98
            R V  YNA +  F Q G L  A  L                        VC  +K    
Sbjct: 63  DRQVTDYNAKILHFCQLGNLENAMEL------------------------VCMCQK---- 94

Query: 99  MPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNV----ISWNAMIAGYVECCMMGEA 154
             E    +++S++     +  L + +KV + +   NV    +    +++ Y  C  + E 
Sbjct: 95  -SELETKTYSSVLQLCAGSKSLTDGKKVHSIIKSNNVAVDEVLGLKLVSLYATCGDLKEG 153

Query: 155 IVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRK------------------- 195
             +F+ ME++NV  W  M+S Y + G+ +E  CLF+ M  K                   
Sbjct: 154 RRVFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGKRPESASELFDKLCD 213

Query: 196 -NVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMI-----NGYIRFG 249
            +V+SW +MI G+  NG  +  L ++ +M  +   G + ++ +  S++     +G +  G
Sbjct: 214 RDVISWNSMISGYVSNGLTERGLEIYKQMMYL---GIDVDLATIISVLVGCANSGTLSLG 270

Query: 250 RLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQ 309
           +   +  +  T   R   S T ++D Y   G +  A  +F  M +R+ V+WT+MI+G  +
Sbjct: 271 KAVHSLAIKSTFERRINFSNT-LLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTR 329

Query: 310 NELFVEATYLFMEMRAHGVP-PLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLI 368
           +     A  L  +M   GV   + AT S+L  A   + ++D G+ +H  +     ES+L 
Sbjct: 330 DGRSDGAIRLLQQMEKEGVKLDVVATTSILH-ACARSGSLDNGKDVHDYIKANNMESNLF 388

Query: 369 LENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESG 428
           + N L+ MY KCG +D A ++FS MV +D++SWN+M+                       
Sbjct: 389 VCNALMDMYTKCGSMDGANSVFSTMVVKDIISWNTMI---------------------GE 427

Query: 429 THPNSVTFLGILSACSHAGLVSRGWEL 455
             P+S T   IL AC+    + RG E+
Sbjct: 428 LKPDSRTMACILPACASLSALERGKEI 454



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/142 (23%), Positives = 64/142 (45%), Gaps = 16/142 (11%)

Query: 334 TFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNM 393
           T+S +      + ++  G+++H ++       D +L   L+S+YA CG +     +F  M
Sbjct: 101 TYSSVLQLCAGSKSLTDGKKVHSIIKSNNVAVDEVLGLKLVSLYATCGDLKEGRRVFDTM 160

Query: 394 VSRDLVSWNSMVMGFSHHGLANETLKVFESMLES---GTHPNSVTFL------------- 437
             +++  WN MV  ++  G   E++ +F+ M+E    G  P S + L             
Sbjct: 161 EKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGKRPESASELFDKLCDRDVISWN 220

Query: 438 GILSACSHAGLVSRGWELFNAM 459
            ++S     GL  RG E++  M
Sbjct: 221 SMISGYVSNGLTERGLEIYKQM 242


>gi|357507465|ref|XP_003624021.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355499036|gb|AES80239.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 632

 Score =  308 bits (788), Expect = 7e-81,   Method: Compositional matrix adjust.
 Identities = 174/507 (34%), Positives = 271/507 (53%), Gaps = 49/507 (9%)

Query: 116 RNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEE----RNVVTWTS 171
           + G +  ARK+F+ MP + V  WN MI+GY +C    EA  LF  M +    RNV+TWT+
Sbjct: 131 KYGPIEFARKLFDEMPDRTVADWNVMISGYWKCGNEEEASTLFHVMGDQEISRNVITWTT 190

Query: 172 MISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEM-------- 223
           MI+G+ + G ++     F +MP ++VVSW AM+ G+A  G  +E++ LF +M        
Sbjct: 191 MITGHAKKGNLKTARMYFDKMPERSVVSWNAMLSGYAQGGAPEETIRLFNDMLSPGNVQP 250

Query: 224 ---------KGICDNGNNCNVQSC-----------------NSMINGYIRFGRLEEAQNL 257
                          G+ C  +S                   ++++ + + G LE A  +
Sbjct: 251 DETTWATVISSCSSLGDPCLSESIVRKLDDKVGFRPNYFVKTALLDMHAKCGNLEAAHKI 310

Query: 258 FDTVPV---RDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFV 314
           F+ + V   R  + W +MI  Y  VG + +A +LF  MP RD V+W +MI+G  QN    
Sbjct: 311 FEQLGVYKYRSSVPWNAMISAYARVGDLPSAKHLFDKMPQRDTVSWNSMIAGYTQNGESF 370

Query: 315 EATYLFMEM--RAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENC 372
           +A  LF EM        P   T   +F A G    + LG     +L     +  + + N 
Sbjct: 371 KAIKLFEEMISSEDSRKPDEVTMVSVFSACGHLGELGLGNWAVSILKVNHIQISISVYNS 430

Query: 373 LISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPN 432
           LI+MY++CG + +A  IF  M +RDLVS+N+++ GF+ HG   E++++   M E G  P+
Sbjct: 431 LINMYSRCGSMQDAVLIFQEMATRDLVSYNTLISGFAEHGHGMESIELLSKMKEDGIEPD 490

Query: 433 SVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFV 492
            +T++ IL+ACSHAGL+  G  LF ++       P  +HY  MI++LGRAG+++EA + +
Sbjct: 491 RITYIAILTACSHAGLLDEGQRLFESI-----KFPDVDHYACMIDMLGRAGRLEEAMKLI 545

Query: 493 LRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRH 552
             +P EP   I+G+LL A        E+ E AA +L +++P N+  + +L NIYA++GR 
Sbjct: 546 QSMPMEPHAGIYGSLLNATSI-HKQVELGELAAAKLFKVEPHNSGNYALLSNIYASAGRW 604

Query: 553 VEEHKLRMDMGLKGVRKVPGCSWLMRN 579
            E  K+R  M  +GV+K  G SWL  N
Sbjct: 605 KEGDKVRDTMRKQGVKKTTGLSWLEHN 631



 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 122/428 (28%), Positives = 203/428 (47%), Gaps = 63/428 (14%)

Query: 21  YSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPE----RNVVSW 76
           Y+K G I+ A+ LF  MP R V  +N M+SG+ + G   EA  LF  M +    RNV++W
Sbjct: 129 YAKYGPIEFARKLFDEMPDRTVADWNVMISGYWKCGNEEEASTLFHVMGDQEISRNVITW 188

Query: 77  TAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSM-PIKNV 135
           T MI G A  G +  AR  F++MPER+VVSWN+M+ G  + G   E  ++FN M    NV
Sbjct: 189 TTMITGHAKKGNLKTARMYFDKMPERSVVSWNAMLSGYAQGGAPEETIRLFNDMLSPGNV 248

Query: 136 ----ISWNAMIAG------------------------------------YVECCMMGEAI 155
                +W  +I+                                     + +C  +  A 
Sbjct: 249 QPDETTWATVISSCSSLGDPCLSESIVRKLDDKVGFRPNYFVKTALLDMHAKCGNLEAAH 308

Query: 156 VLFEEM---EERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGF 212
            +FE++   + R+ V W +MIS Y R G++     LF +MP+++ VSW +MI G+  NG 
Sbjct: 309 KIFEQLGVYKYRSSVPWNAMISAYARVGDLPSAKHLFDKMPQRDTVSWNSMIAGYTQNGE 368

Query: 213 HKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEE------AQNLFDTVPVRDE 266
             +++ LF EM    D+     V    +M++ +   G L E      A ++     ++  
Sbjct: 369 SFKAIKLFEEMISSEDSRKPDEV----TMVSVFSACGHLGELGLGNWAVSILKVNHIQIS 424

Query: 267 IS-WTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRA 325
           IS + S+I+ Y   G + +A  +F  M  RD V++  +ISG  ++   +E+  L  +M+ 
Sbjct: 425 ISVYNSLINMYSRCGSMQDAVLIFQEMATRDLVSYNTLISGFAEHGHGMESIELLSKMKE 484

Query: 326 HGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDN 385
            G+ P   T+  +  A      +D G++    L ++    D+    C+I M  + G ++ 
Sbjct: 485 DGIEPDRITYIAILTACSHAGLLDEGQR----LFESIKFPDVDHYACMIDMLGRAGRLEE 540

Query: 386 AYNIFSNM 393
           A  +  +M
Sbjct: 541 AMKLIQSM 548



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 99/368 (26%), Positives = 166/368 (45%), Gaps = 88/368 (23%)

Query: 11  VVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEM-- 68
           V+  T+ IT ++K+G +  A+  F  MP+R+VVS+NAMLSG+ Q G   E  RLF +M  
Sbjct: 185 VITWTTMITGHAKKGNLKTARMYFDKMPERSVVSWNAMLSGYAQGGAPEETIRLFNDMLS 244

Query: 69  ---PERNVVSWTAMICGLADAGRVC----------------------------------- 90
               + +  +W  +I   +  G  C                                   
Sbjct: 245 PGNVQPDETTWATVISSCSSLGDPCLSESIVRKLDDKVGFRPNYFVKTALLDMHAKCGNL 304

Query: 91  -EARKLFEEM---PERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYV 146
             A K+FE++     R+ V WN+M+    R G+L  A+ +F+ MP ++ +SWN+MIAGY 
Sbjct: 305 EAAHKIFEQLGVYKYRSSVPWNAMISAYARVGDLPSAKHLFDKMPQRDTVSWNSMIAGYT 364

Query: 147 ECCMMGEAIVLFEEM---------EERNVVT----------------------------- 168
           +     +AI LFEEM         +E  +V+                             
Sbjct: 365 QNGESFKAIKLFEEMISSEDSRKPDEVTMVSVFSACGHLGELGLGNWAVSILKVNHIQIS 424

Query: 169 ---WTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKG 225
              + S+I+ Y R G +++   +F+ M  +++VS+  +I GFA +G   ES+ L  +MK 
Sbjct: 425 ISVYNSLINMYSRCGSMQDAVLIFQEMATRDLVSYNTLISGFAEHGHGMESIELLSKMK- 483

Query: 226 ICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNA 285
             ++G   +  +  +++      G L+E Q LF+++   D   +  MID     G++  A
Sbjct: 484 --EDGIEPDRITYIAILTACSHAGLLDEGQRLFESIKFPDVDHYACMIDMLGRAGRLEEA 541

Query: 286 YYLFHNMP 293
             L  +MP
Sbjct: 542 MKLIQSMP 549



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 99/407 (24%), Positives = 167/407 (41%), Gaps = 80/407 (19%)

Query: 157 LFEEMEERNVVTWTSMISGYCRAGEVEEGYC-LFRRMPRKNVVSWTAMIGGFAWNGFHKE 215
           +F      +V  +T M+  Y + G   + +  LF+ M +   +   A            E
Sbjct: 43  IFHAATHPDVRVFTFMLKYYSQIGVHSQVFVSLFKHMLQHCDIKPNASFYSVMMKSAGSE 102

Query: 216 SLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVP------------- 262
           S+L       +  +G + +    N ++  Y ++G +E A+ LFD +P             
Sbjct: 103 SMLFLAH---VLKSGYDRDHYVRNGILGIYAKYGPIEFARKLFDEMPDRTVADWNVMISG 159

Query: 263 ----------------------VRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAW 300
                                  R+ I+WT+MI G+   G +  A   F  MP+R  V+W
Sbjct: 160 YWKCGNEEEASTLFHVMGDQEISRNVITWTTMITGHAKKGNLKTARMYFDKMPERSVVSW 219

Query: 301 TAMISGLVQNELFVEATYLFMEMRAHG-VPPLNATFSVLFGAAGATANIDLGRQI----- 354
            AM+SG  Q     E   LF +M + G V P   T++ +  +  +  +  L   I     
Sbjct: 220 NAMLSGYAQGGAPEETIRLFNDMLSPGNVQPDETTWATVISSCSSLGDPCLSESIVRKLD 279

Query: 355 ------------------HCVLMKTESESDLILE------------NCLISMYAKCGVID 384
                             H      E+   +  +            N +IS YA+ G + 
Sbjct: 280 DKVGFRPNYFVKTALLDMHAKCGNLEAAHKIFEQLGVYKYRSSVPWNAMISAYARVGDLP 339

Query: 385 NAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESML--ESGTHPNSVTFLGILSA 442
           +A ++F  M  RD VSWNSM+ G++ +G + + +K+FE M+  E    P+ VT + + SA
Sbjct: 340 SAKHLFDKMPQRDTVSWNSMIAGYTQNGESFKAIKLFEEMISSEDSRKPDEVTMVSVFSA 399

Query: 443 CSHAGLVSRG-WELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEA 488
           C H G +  G W +  ++  V  IQ     Y S+IN+  R G +++A
Sbjct: 400 CGHLGELGLGNWAV--SILKVNHIQISISVYNSLINMYSRCGSMQDA 444



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 63/218 (28%), Positives = 108/218 (49%), Gaps = 22/218 (10%)

Query: 5   NHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRL 64
           NH +  +    S I  YS+ G + +A  +FQ M  R++VSYN ++SGF ++G   E+  L
Sbjct: 419 NHIQISISVYNSLINMYSRCGSMQDAVLIFQEMATRDLVSYNTLISGFAEHGHGMESIEL 478

Query: 65  FEEMPERNV----VSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGEL 120
             +M E  +    +++ A++   + AG + E ++LFE +   +V  +  M+  L R G L
Sbjct: 479 LSKMKEDGIEPDRITYIAILTACSHAGLLDEGQRLFESIKFPDVDHYACMIDMLGRAGRL 538

Query: 121 NEARKVFNSMPIKNVISWNAMIAGYV-------ECCMMGE--AIVLFEEMEERNVVTWTS 171
            EA K+  SMP++     +A I G +       +   +GE  A  LF ++E  N   +  
Sbjct: 539 EEAMKLIQSMPMEP----HAGIYGSLLNATSIHKQVELGELAAAKLF-KVEPHNSGNYAL 593

Query: 172 MISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAW 209
           + + Y  AG  +EG  +   M ++ V   T    G +W
Sbjct: 594 LSNIYASAGRWKEGDKVRDTMRKQGVKKTT----GLSW 627



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 68/305 (22%), Positives = 126/305 (41%), Gaps = 42/305 (13%)

Query: 287 YLFHNMPDRDAVAWTAMISGL----VQNELFVEATYLFMEMRAH-GVPPLNATFSVLFGA 341
           ++FH     D   +T M+       V +++FV    LF  M  H  + P  + +SV+  +
Sbjct: 42  HIFHAATHPDVRVFTFMLKYYSQIGVHSQVFVS---LFKHMLQHCDIKPNASFYSVMMKS 98

Query: 342 AGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSW 401
           AG+ + + L       ++K+  + D  + N ++ +YAK G I+ A  +F  M  R +  W
Sbjct: 99  AGSESMLFLAH-----VLKSGYDRDHYVRNGILGIYAKYGPIEFARKLFDEMPDRTVADW 153

Query: 402 NSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAG-----------LVS 450
           N M+ G+   G   E   +F  M +     N +T+  +++  +  G           +  
Sbjct: 154 NVMISGYWKCGNEEEASTLFHVMGDQEISRNVITWTTMITGHAKKGNLKTARMYFDKMPE 213

Query: 451 RGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGA 510
           R    +NAM   Y     PE  + + N +   G +            +PD   W  ++ +
Sbjct: 214 RSVVSWNAMLSGYAQGGAPEETIRLFNDMLSPGNV------------QPDETTWATVISS 261

Query: 511 CGFCEGNAEIAEHAAKRLLE---LDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGV 567
           C    G+  ++E   ++L +     P N      L +++A  G     HK+   +G+   
Sbjct: 262 CSSL-GDPCLSESIVRKLDDKVGFRP-NYFVKTALLDMHAKCGNLEAAHKIFEQLGVYKY 319

Query: 568 R-KVP 571
           R  VP
Sbjct: 320 RSSVP 324


>gi|326519006|dbj|BAJ92663.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 547

 Score =  308 bits (788), Expect = 7e-81,   Method: Compositional matrix adjust.
 Identities = 167/449 (37%), Positives = 253/449 (56%), Gaps = 13/449 (2%)

Query: 7   PKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQ--RNVVSYNAMLSGFLQNGRLSEARRL 64
           P    V   + I  + + G +  A+ALF   P   R +    AML G+ + GR+  ARRL
Sbjct: 54  PHEDAVAYANLIDLHLRCGDLPRAEALFHAAPTAARGLRLDTAMLDGYFKAGRVDHARRL 113

Query: 65  FEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEAR 124
           F+ MP ++V +WT ++ G   A RV EAR+LF+ MP R+VVSW +M+ G  R G + EAR
Sbjct: 114 FDGMPVKSVGAWTRVVSGYCRARRVDEARRLFDAMPVRDVVSWTAMLQGYARIGMMREAR 173

Query: 125 KVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEE 184
            +F++MP ++ +SW  M+ GY    M+ EA  +F++M ERNVVTWT M+  Y   G  +E
Sbjct: 174 GLFDAMPARDFVSWTVMLQGYARRGMLREAREVFDQMPERNVVTWTVMVKAYADQGHFQE 233

Query: 185 GYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMING 244
              LF +MP++N+ SW  MI G    G   E++ LF  M        + N  S  +M+ G
Sbjct: 234 AMELFNKMPQRNLHSWNIMISGCLRAGNVDEAVRLFERMP-------DRNAVSWTTMVTG 286

Query: 245 YIRFGRLEEAQNLFDTVPV-RDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAM 303
             + GR+  A+  FD +P  RD  +W +MI  Y + GQ++ A  LF ++P +D V+W A+
Sbjct: 287 LAQNGRVSMAREFFDGMPENRDTAAWNAMITAYANDGQMNEAQRLFDSIPAKDLVSWNAI 346

Query: 304 ISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTES 363
           I G  +N+   E   LF+ M    V P   T   +   + +T  +    QIH +      
Sbjct: 347 IHGYAKNKHKGEVMGLFLLMLRSAVSPDRTTLISVLVTSESTVEVG---QIHGLATTRGL 403

Query: 364 ESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFES 423
            SD  L N L++MY++ G + +A+ +F  +  +D ++W SM+  F++HG A+  L+ F  
Sbjct: 404 LSDTSLGNALLTMYSRSGDLHSAWQVFKMIQEKDPITWTSMMRAFANHGRASYALQAFAQ 463

Query: 424 MLESGTHPNSVTFLGILSACSHAGLVSRG 452
           ML+ G  P+S TF+  LSACSHAGLV +G
Sbjct: 464 MLQHGYKPSSTTFIAALSACSHAGLVDKG 492



 Score =  209 bits (533), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 117/357 (32%), Positives = 186/357 (52%), Gaps = 13/357 (3%)

Query: 7   PKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFE 66
           P   VV  T+ +  Y++ G + EA+ LF  MP R+ VS+  ML G+ + G L EAR +F+
Sbjct: 149 PVRDVVSWTAMLQGYARIGMMREARGLFDAMPARDFVSWTVMLQGYARRGMLREAREVFD 208

Query: 67  EMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKV 126
           +MPERNVV+WT M+   AD G   EA +LF +MP+RN+ SWN M+ G +R G ++EA ++
Sbjct: 209 QMPERNVVTWTVMVKAYADQGHFQEAMELFNKMPQRNLHSWNIMISGCLRAGNVDEAVRL 268

Query: 127 FNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEM-EERNVVTWTSMISGYCRAGEVEEG 185
           F  MP +N +SW  M+ G  +   +  A   F+ M E R+   W +MI+ Y   G++ E 
Sbjct: 269 FERMPDRNAVSWTTMVTGLAQNGRVSMAREFFDGMPENRDTAAWNAMITAYANDGQMNEA 328

Query: 186 YCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGY 245
             LF  +P K++VSW A+I G+A N    E + LF+ M     + +   + S        
Sbjct: 329 QRLFDSIPAKDLVSWNAIIHGYAKNKHKGEVMGLFLLMLRSAVSPDRTTLISVLVTSEST 388

Query: 246 IRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSV----GQVSNAYYLFHNMPDRDAVAWT 301
           +  G++            R  +S TS+ +  L++    G + +A+ +F  + ++D + WT
Sbjct: 389 VEVGQIH------GLATTRGLLSDTSLGNALLTMYSRSGDLHSAWQVFKMIQEKDPITWT 442

Query: 302 AMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGR--QIHC 356
           +M+     +     A   F +M  HG  P + TF     A      +D GR  + HC
Sbjct: 443 SMMRAFANHGRASYALQAFAQMLQHGYKPSSTTFIAALSACSHAGLVDKGRASRAHC 499



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 72/272 (26%), Positives = 119/272 (43%), Gaps = 48/272 (17%)

Query: 239 NSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAV 298
            +M++GY + GR++ A+ LFD +PV+   +WT ++ GY    +V  A  LF  MP RD V
Sbjct: 95  TAMLDGYFKAGRVDHARRLFDGMPVKSVGAWTRVVSGYCRARRVDEARRLFDAMPVRDVV 154

Query: 299 AWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVL 358
           +WTAM+ G  +  +  EA  LF  M A                                 
Sbjct: 155 SWTAMLQGYARIGMMREARGLFDAMPAR-------------------------------- 182

Query: 359 MKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETL 418
                  D +    ++  YA+ G++  A  +F  M  R++V+W  MV  ++  G   E +
Sbjct: 183 -------DFVSWTVMLQGYARRGMLREAREVFDQMPERNVVTWTVMVKAYADQGHFQEAM 235

Query: 419 KVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINL 478
           ++F  M +   H  ++    ++S C  AG V     LF  M D   +      + +M+  
Sbjct: 236 ELFNKMPQRNLHSWNI----MISGCLRAGNVDEAVRLFERMPDRNAVS-----WTTMVTG 286

Query: 479 LGRAGKIKEAEEFVLRLPFEPDHRIWGALLGA 510
           L + G++  A EF   +P   D   W A++ A
Sbjct: 287 LAQNGRVSMAREFFDGMPENRDTAAWNAMITA 318


>gi|359483532|ref|XP_002265722.2| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Vitis vinifera]
          Length = 824

 Score =  308 bits (788), Expect = 8e-81,   Method: Compositional matrix adjust.
 Identities = 187/599 (31%), Positives = 308/599 (51%), Gaps = 66/599 (11%)

Query: 39  QRNVVSYNAMLSG-----FLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEAR 93
           Q N V  + +L       ++  G L E RR+F+++    V  W  ++ G A  G   E+ 
Sbjct: 128 QSNDVEVDGVLGSKLVFMYVTCGDLREGRRIFDKVANEKVFLWNLLMNGYAKIGNFRESL 187

Query: 94  KLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGE 153
            LF+ M E          +G+ R   +  ARK+F+ +  ++VISWN+MI+GYV   +  +
Sbjct: 188 SLFKRMRE----------LGIRR---VESARKLFDELGDRDVISWNSMISGYVSNGLSEK 234

Query: 154 AIVLFEEME----ERNVVTWTSMISG---------------------------------- 175
            + LFE+M       ++ T  S+++G                                  
Sbjct: 235 GLDLFEQMLLLGINTDLATMVSVVAGCSNTGMLLLGRALHGYAIKASFGKELTLNNCLLD 294

Query: 176 -YCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCN 234
            Y ++G +     +F  M  ++VVSWT+MI G+A  G    S+ LF EM+     G + +
Sbjct: 295 MYSKSGNLNSAIQVFETMGERSVVSWTSMIAGYAREGLSDMSVRLFHEME---KEGISPD 351

Query: 235 VQSCNSMINGYIRFGRLEEAQNLFDTVP----VRDEISWTSMIDGYLSVGQVSNAYYLFH 290
           + +  ++++     G LE  +++ + +       D     +++D Y   G + +A+ +F 
Sbjct: 352 IFTITTILHACACTGLLENGKDVHNYIKENKMQSDLFVSNALMDMYAKCGSMGDAHSVFS 411

Query: 291 NMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDL 350
            M  +D V+W  MI G  +N L  EA  LF+EM+ +   P + T + +  A  + A ++ 
Sbjct: 412 EMQVKDIVSWNTMIGGYSKNSLPNEALNLFVEMQ-YNSKPNSITMACILPACASLAALER 470

Query: 351 GRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSH 410
           G++IH  +++     D  + N L+ MY KCG +  A  +F  +  +DLVSW  M+ G+  
Sbjct: 471 GQEIHGHILRNGFSLDRHVANALVDMYLKCGALGLARLLFDMIPEKDLVSWTVMIAGYGM 530

Query: 411 HGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPE 470
           HG  +E +  F  M  SG  P+ V+F+ IL ACSH+GL+  GW  FN M +   I+P  E
Sbjct: 531 HGYGSEAIAAFNEMRNSGIEPDEVSFISILYACSHSGLLDEGWGFFNMMRNNCCIEPKSE 590

Query: 471 HYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLE 530
           HY  +++LL RAG + +A +F+  +P EPD  IWGALL  C     + ++AE  A+ + E
Sbjct: 591 HYACIVDLLARAGNLSKAYKFIKMMPIEPDATIWGALLCGCRIYH-DVKLAEKVAEHVFE 649

Query: 531 LDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGD 589
           L+P N   +V+L NIYA + +  E  KLR  +G +G+RK PGCSW+   G + +F++GD
Sbjct: 650 LEPENTGYYVLLANIYAEAEKWEEVKKLRERIGRRGLRKNPGCSWIEIKGKVHIFVTGD 708



 Score =  183 bits (464), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 118/425 (27%), Positives = 214/425 (50%), Gaps = 27/425 (6%)

Query: 41  NVVSYNAMLSGFLQNGRLSEARRLFEEMPERNV--VSWTAMICGLADAGRVCEARKLFEE 98
            +  YN  +  F + G L  A  L  + P+ ++   ++ +++   AD   + + R++   
Sbjct: 67  KITDYNIEICRFCELGNLRRAMELINQSPKPDLELRTYCSVLQLCADLKSIQDGRRIHSI 126

Query: 99  MPERNV----VSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEA 154
           +   +V    V  + +V   +  G+L E R++F+ +  + V  WN ++ GY +     E+
Sbjct: 127 IQSNDVEVDGVLGSKLVFMYVTCGDLREGRRIFDKVANEKVFLWNLLMNGYAKIGNFRES 186

Query: 155 IVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHK 214
           + LF+ M E  +               VE    LF  +  ++V+SW +MI G+  NG  +
Sbjct: 187 LSLFKRMRELGI-------------RRVESARKLFDELGDRDVISWNSMISGYVSNGLSE 233

Query: 215 ESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFD---TVPVRDEISWTS 271
           + L LF +M  +   G N ++ +  S++ G    G L   + L           E++  +
Sbjct: 234 KGLDLFEQMLLL---GINTDLATMVSVVAGCSNTGMLLLGRALHGYAIKASFGKELTLNN 290

Query: 272 -MIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPP 330
            ++D Y   G +++A  +F  M +R  V+WT+MI+G  +  L   +  LF EM   G+ P
Sbjct: 291 CLLDMYSKSGNLNSAIQVFETMGERSVVSWTSMIAGYAREGLSDMSVRLFHEMEKEGISP 350

Query: 331 LNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIF 390
              T + +  A   T  ++ G+ +H  + + + +SDL + N L+ MYAKCG + +A+++F
Sbjct: 351 DIFTITTILHACACTGLLENGKDVHNYIKENKMQSDLFVSNALMDMYAKCGSMGDAHSVF 410

Query: 391 SNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVS 450
           S M  +D+VSWN+M+ G+S + L NE L +F  M +  + PNS+T   IL AC+    + 
Sbjct: 411 SEMQVKDIVSWNTMIGGYSKNSLPNEALNLFVEM-QYNSKPNSITMACILPACASLAALE 469

Query: 451 RGWEL 455
           RG E+
Sbjct: 470 RGQEI 474



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 66/319 (20%), Positives = 121/319 (37%), Gaps = 88/319 (27%)

Query: 334 TFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCG------------ 381
           T+  +        +I  GR+IH ++   + E D +L + L+ MY  CG            
Sbjct: 103 TYCSVLQLCADLKSIQDGRRIHSIIQSNDVEVDGVLGSKLVFMYVTCGDLREGRRIFDKV 162

Query: 382 -------------------------------------VIDNAYNIFSNMVSRDLVSWNSM 404
                                                 +++A  +F  +  RD++SWNSM
Sbjct: 163 ANEKVFLWNLLMNGYAKIGNFRESLSLFKRMRELGIRRVESARKLFDELGDRDVISWNSM 222

Query: 405 VMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLV-------------SR 451
           + G+  +GL+ + L +FE ML  G + +  T + +++ CS+ G++             S 
Sbjct: 223 ISGYVSNGLSEKGLDLFEQMLLLGINTDLATMVSVVAGCSNTGMLLLGRALHGYAIKASF 282

Query: 452 GWELF--NAMFDVYKIQPGPEHYVSMINLLGR----------AGKIKEA-EEFVLRLPFE 498
           G EL   N + D+Y         + +   +G           AG  +E   +  +RL  E
Sbjct: 283 GKELTLNNCLLDMYSKSGNLNSAIQVFETMGERSVVSWTSMIAGYAREGLSDMSVRLFHE 342

Query: 499 -------PDHRIWGALLGAC---GFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAA 548
                  PD      +L AC   G  E   ++  +  +  ++ D   + A   L ++YA 
Sbjct: 343 MEKEGISPDIFTITTILHACACTGLLENGKDVHNYIKENKMQSDLFVSNA---LMDMYAK 399

Query: 549 SGRHVEEHKLRMDMGLKGV 567
            G   + H +  +M +K +
Sbjct: 400 CGSMGDAHSVFSEMQVKDI 418



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 58/220 (26%), Positives = 102/220 (46%), Gaps = 27/220 (12%)

Query: 9   SLVVHLTSSITK-YSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEE 67
           SL  H+ +++   Y K G +  A+ LF ++P++++VS+  M++G+  +G  SEA   F E
Sbjct: 484 SLDRHVANALVDMYLKCGALGLARLLFDMIPEKDLVSWTVMIAGYGMHGYGSEAIAAFNE 543

Query: 68  MP----ERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNS-----MVVGLIRNG 118
           M     E + VS+ +++   + +G + E    F  M     +   S     +V  L R G
Sbjct: 544 MRNSGIEPDEVSFISILYACSHSGLLDEGWGFFNMMRNNCCIEPKSEHYACIVDLLARAG 603

Query: 119 ELNEARKVFNSMPIK-NVISWNAMIAGYVECCMMGEAIVLFE-------EMEERNVVTWT 170
            L++A K    MPI+ +   W A++ G    C +   + L E       E+E  N   + 
Sbjct: 604 NLSKAYKFIKMMPIEPDATIWGALLCG----CRIYHDVKLAEKVAEHVFELEPENTGYYV 659

Query: 171 SMISGYCRAGEVEEGYCLFRRMPRKNV-----VSWTAMIG 205
            + + Y  A + EE   L  R+ R+ +      SW  + G
Sbjct: 660 LLANIYAEAEKWEEVKKLRERIGRRGLRKNPGCSWIEIKG 699


>gi|449469198|ref|XP_004152308.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g37170-like [Cucumis sativus]
 gi|449484855|ref|XP_004156999.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g37170-like [Cucumis sativus]
          Length = 724

 Score =  307 bits (787), Expect = 8e-81,   Method: Compositional matrix adjust.
 Identities = 179/538 (33%), Positives = 286/538 (53%), Gaps = 33/538 (6%)

Query: 79  MICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISW 138
           ++CG     R+ EA +L   + +     + +++   ++   L E ++V   +     I  
Sbjct: 97  ILCG---QSRLREAVQLLYRIEKPYASIYLTLLKFCLKQRALKEGKQVHAHIKTSGSIGL 153

Query: 139 ---NAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRK 195
              N ++  Y +C  + +A  +F+EM  R++ +W  MISGY + G  E+   LF +MP +
Sbjct: 154 YISNRLLDMYAKCGSLVDAEKVFDEMVHRDLCSWNIMISGYVKGGNFEKARNLFDKMPNR 213

Query: 196 NVVSWTAMIGGFAWNGFHKESLLLFIEM-KGICDNGNNCNVQSC------------NSMI 242
           +  SWTA+I G   +   +E+L L+  M K      N C + S                I
Sbjct: 214 DNFSWTAIISGCVQHNRPEEALELYRLMQKHDYSKSNKCTISSALAASAAIPSLHMGKKI 273

Query: 243 NGYI-RFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWT 301
           +G+I R G         D+    DE+ W S++D Y   G +  A Y+F  M +RD V+WT
Sbjct: 274 HGHIMRMG--------LDS----DEVVWCSLLDMYGKCGSIEEARYIFDKMEERDVVSWT 321

Query: 302 AMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKT 361
            MI   ++N    E   LF  +    + P + TF+ +  A    A  DLG+QIH  +++ 
Sbjct: 322 TMIHTYLKNGRREEGFALFRHLMNSNIMPNDFTFAGVLNACADLAAEDLGKQIHAYMVRV 381

Query: 362 ESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVF 421
             +S     + L+ MY+KCG I+NA ++F  +   DL SW S+++G++ HG  ++ L  F
Sbjct: 382 GFDSFSSAASALVHMYSKCGDIENAKSVFEILPQPDLFSWTSLLVGYAQHGQHDKALHFF 441

Query: 422 ESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGR 481
           E +L+SGT P+ + F+G+LSAC+HAGLV +G E F+++ + + +    +HY  +I+LL R
Sbjct: 442 ELLLKSGTKPDGIAFIGVLSACAHAGLVDKGLEYFHSIKEKHGLTRTIDHYACIIDLLAR 501

Query: 482 AGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVV 541
           AG+  EAE  +  +P +PD  IW ALLG C    GN E+A+ AAK L E++P N   +V 
Sbjct: 502 AGQFTEAESIINEMPIKPDKYIWAALLGGCRI-HGNLELAKRAAKSLFEIEPENPATYVT 560

Query: 542 LCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEIL 599
           L NIYA++G   EE  +R  M  +G+ K PG SW+     + +F  GD    +  EIL
Sbjct: 561 LANIYASAGMRAEEANIRETMDSRGIVKKPGMSWIEIRREVHVFSVGDNSHPKSKEIL 618



 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 114/439 (25%), Positives = 195/439 (44%), Gaps = 64/439 (14%)

Query: 21  YSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMI 80
           Y+K G + +A+ +F  M  R++ S+N M+SG+++ G   +AR LF++MP R+  SWTA+I
Sbjct: 163 YAKCGSLVDAEKVFDEMVHRDLCSWNIMISGYVKGGNFEKARNLFDKMPNRDNFSWTAII 222

Query: 81  CGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNG-----ELNEARKVFNSM----P 131
            G     R  EA +L+  M + +    N   +            L+  +K+   +     
Sbjct: 223 SGCVQHNRPEEALELYRLMQKHDYSKSNKCTISSALAASAAIPSLHMGKKIHGHIMRMGL 282

Query: 132 IKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRR 191
             + + W +++  Y +C  + EA  +F++MEER+VV+WT+MI  Y + G  EEG+ LFR 
Sbjct: 283 DSDEVVWCSLLDMYGKCGSIEEARYIFDKMEERDVVSWTTMIHTYLKNGRREEGFALFRH 342

Query: 192 MPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKG------ICDNGNNCNVQSCNSMINGY 245
           +   N+     M   F + G       L  E  G      +   G +    + +++++ Y
Sbjct: 343 LMNSNI-----MPNDFTFAGVLNACADLAAEDLGKQIHAYMVRVGFDSFSSAASALVHMY 397

Query: 246 IRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNM----PDRDAVAWT 301
            + G +E A+++F+ +P  D  SWTS++ GY   GQ   A + F  +       D +A+ 
Sbjct: 398 SKCGDIENAKSVFEILPQPDLFSWTSLLVGYAQHGQHDKALHFFELLLKSGTKPDGIAFI 457

Query: 302 AMIS-----GLVQNEL-------------------------------FVEATYLFMEMRA 325
            ++S     GLV   L                               F EA  +  EM  
Sbjct: 458 GVLSACAHAGLVDKGLEYFHSIKEKHGLTRTIDHYACIIDLLARAGQFTEAESIINEM-- 515

Query: 326 HGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDN 385
             + P    ++ L G      N++L ++    L + E E+       L ++YA  G+   
Sbjct: 516 -PIKPDKYIWAALLGGCRIHGNLELAKRAAKSLFEIEPENPATYVT-LANIYASAGMRAE 573

Query: 386 AYNIFSNMVSRDLVSWNSM 404
             NI   M SR +V    M
Sbjct: 574 EANIRETMDSRGIVKKPGM 592



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 59/273 (21%), Positives = 123/273 (45%), Gaps = 46/273 (16%)

Query: 16  SSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVV- 74
           S +  Y K G I+EA+ +F  M +R+VVS+  M+  +L+NGR  E   LF  +   N++ 
Sbjct: 291 SLLDMYGKCGSIEEARYIFDKMEERDVVSWTTMIHTYLKNGRREEGFALFRHLMNSNIMP 350

Query: 75  ---SWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLI----RNGELNEARKVF 127
              ++  ++   AD       +++   M      S++S    L+    + G++  A+ VF
Sbjct: 351 NDFTFAGVLNACADLAAEDLGKQIHAYMVRVGFDSFSSAASALVHMYSKCGDIENAKSVF 410

Query: 128 NSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEM----EERNVVTWTSMISGYCRAGEVE 183
             +P  ++ SW +++ GY +     +A+  FE +     + + + +  ++S    AG V+
Sbjct: 411 EILPQPDLFSWTSLLVGYAQHGQHDKALHFFELLLKSGTKPDGIAFIGVLSACAHAGLVD 470

Query: 184 EGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMIN 243
           +G   F  +  K+ ++ T  I  +A                                +I+
Sbjct: 471 KGLEYFHSIKEKHGLTRT--IDHYA-------------------------------CIID 497

Query: 244 GYIRFGRLEEAQNLFDTVPVR-DEISWTSMIDG 275
              R G+  EA+++ + +P++ D+  W +++ G
Sbjct: 498 LLARAGQFTEAESIINEMPIKPDKYIWAALLGG 530



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 52/229 (22%), Positives = 106/229 (46%), Gaps = 23/229 (10%)

Query: 1   MSERNHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSE 60
           M ER+     VV  T+ I  Y K G  +E  ALF+ +   N++  +   +G L       
Sbjct: 312 MEERD-----VVSWTTMIHTYLKNGRREEGFALFRHLMNSNIMPNDFTFAGVLNACADLA 366

Query: 61  ARRLFEEMPERNV--------VSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVV 112
           A  L +++    V         + +A++   +  G +  A+ +FE +P+ ++ SW S++V
Sbjct: 367 AEDLGKQIHAYMVRVGFDSFSSAASALVHMYSKCGDIENAKSVFEILPQPDLFSWTSLLV 426

Query: 113 GLIRNGELNEARKVF----NSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVT 168
           G  ++G+ ++A   F     S    + I++  +++      ++ + +  F  ++E++ +T
Sbjct: 427 GYAQHGQHDKALHFFELLLKSGTKPDGIAFIGVLSACAHAGLVDKGLEYFHSIKEKHGLT 486

Query: 169 -----WTSMISGYCRAGEVEEGYCLFRRMPRK-NVVSWTAMIGGFAWNG 211
                +  +I    RAG+  E   +   MP K +   W A++GG   +G
Sbjct: 487 RTIDHYACIIDLLARAGQFTEAESIINEMPIKPDKYIWAALLGGCRIHG 535


>gi|255541924|ref|XP_002512026.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223549206|gb|EEF50695.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 810

 Score =  307 bits (787), Expect = 9e-81,   Method: Compositional matrix adjust.
 Identities = 194/635 (30%), Positives = 319/635 (50%), Gaps = 58/635 (9%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEM--------P 69
           I  Y K GF+D A  +F  MP RN+VS+N+++SGF +NG   +   +  EM        P
Sbjct: 73  IAMYGKFGFVDAAVKVFHYMPVRNLVSWNSIISGFSENGFSKDCFDMLVEMMAGEEGLLP 132

Query: 70  ERNVVSWTAMIC-------------GLA--------------------DAGRVCEARKLF 96
           +   +     +C             GLA                      G + EA+ LF
Sbjct: 133 DIATLVTVLPVCAREVDVQMGIRIHGLAVKLGLSEDVRVNNSLVDMYSKCGYLTEAQMLF 192

Query: 97  EEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAM-IAGYVECCMMGEAI 155
           ++   +N VSWN+M+ GL   G + EA  +F  M ++  I  N + +   +  C+    +
Sbjct: 193 DKNNRKNAVSWNTMIGGLCTKGYIFEAFNLFREMQMQEDIEVNEVTVLNILPACLEISQL 252

Query: 156 VLFEEME--------ERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGF 207
              +E+         + + +     ++ Y + G +     +F  M  K V SW A+IGG 
Sbjct: 253 RSLKELHGYSIRHGFQYDELVANGFVAAYAKCGMLICAERVFYSMETKTVNSWNALIGGC 312

Query: 208 AWNGFHKESLLLFIEM--KGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRD 265
           A NG  +++L L+I+M   G+  +          S     +R+G+      L   + + D
Sbjct: 313 AQNGDPRKALNLYIQMTYSGLVPDWFTIGSLLLASAHLKSLRYGKEVHGFVLRHGLEI-D 371

Query: 266 EISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRA 325
                S++  Y+  G+ S+A  LF  M ++ +V+W AMISG  QN L  +A  LF ++ +
Sbjct: 372 SFIGISLLSLYIHCGESSSARLLFDGMEEKSSVSWNAMISGYSQNGLPEDALILFRKLVS 431

Query: 326 HGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDN 385
            G  P +     + GA    + + LG++ HC  +K     D+ +    I MYAK G I  
Sbjct: 432 DGFQPSDIAVVSVLGACSQQSALRLGKETHCYALKALLMEDVFVACSTIDMYAKSGCIKE 491

Query: 386 AYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSH 445
           + ++F  + ++DL SWN+++  +  HG   E++++FE M + G  P+  TF+GIL+ CSH
Sbjct: 492 SRSVFDGLKNKDLASWNAIIAAYGVHGDGEESIELFERMRKVGQMPDGFTFIGILTVCSH 551

Query: 446 AGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWG 505
           AGLV  G + FN M + + I+P  EHY  ++++LGRAG++ +A   V  +P +PD R+W 
Sbjct: 552 AGLVEEGLKYFNEMQNFHGIEPKLEHYACVMDMLGRAGRLDDALRLVHEMPEQPDSRVWS 611

Query: 506 ALLGACGFCE--GNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMG 563
           +LL    FC   G  EI +  A++LLEL+P N   +V L N+YA SGR  +  ++R  + 
Sbjct: 612 SLL---SFCRNFGELEIGQIVAEKLLELEPKNVENYVSLSNLYAGSGRWDDVRRVRQMIK 668

Query: 564 LKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
             G++K  GCSW+   G +  F++GD +  Q  E+
Sbjct: 669 DIGLQKDAGCSWIELGGKVHSFVAGDNLLPQSKEM 703



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 112/458 (24%), Positives = 200/458 (43%), Gaps = 55/458 (12%)

Query: 103 NVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEM- 161
           +V   N+++    + G ++ A KVF+ MP++N++SWN++I+G+ E     +   +  EM 
Sbjct: 65  DVFVGNALIAMYGKFGFVDAAVKVFHYMPVRNLVSWNSIISGFSENGFSKDCFDMLVEMM 124

Query: 162 --EE--------------------------------------RNVVTWTSMISGYCRAGE 181
             EE                                       +V    S++  Y + G 
Sbjct: 125 AGEEGLLPDIATLVTVLPVCAREVDVQMGIRIHGLAVKLGLSEDVRVNNSLVDMYSKCGY 184

Query: 182 VEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSM 241
           + E   LF +  RKN VSW  MIGG    G+  E+  LF EM+         N  +  ++
Sbjct: 185 LTEAQMLFDKNNRKNAVSWNTMIGGLCTKGYIFEAFNLFREMQ--MQEDIEVNEVTVLNI 242

Query: 242 INGYIRFGRLEEAQNLFDTVPVR-----DEISWTSMIDGYLSVGQVSNAYYLFHNMPDRD 296
           +   +   +L   + L     +R     DE+     +  Y   G +  A  +F++M  + 
Sbjct: 243 LPACLEISQLRSLKELH-GYSIRHGFQYDELVANGFVAAYAKCGMLICAERVFYSMETKT 301

Query: 297 AVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHC 356
             +W A+I G  QN    +A  L+++M   G+ P   T   L  A+    ++  G+++H 
Sbjct: 302 VNSWNALIGGCAQNGDPRKALNLYIQMTYSGLVPDWFTIGSLLLASAHLKSLRYGKEVHG 361

Query: 357 VLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANE 416
            +++   E D  +   L+S+Y  CG   +A  +F  M  +  VSWN+M+ G+S +GL  +
Sbjct: 362 FVLRHGLEIDSFIGISLLSLYIHCGESSSARLLFDGMEEKSSVSWNAMISGYSQNGLPED 421

Query: 417 TLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYV--S 474
            L +F  ++  G  P+ +  + +L ACS    +  G E          ++   + +V  S
Sbjct: 422 ALILFRKLVSDGFQPSDIAVVSVLGACSQQSALRLGKETHCYALKALLME---DVFVACS 478

Query: 475 MINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACG 512
            I++  ++G IKE+      L    D   W A++ A G
Sbjct: 479 TIDMYAKSGCIKESRSVFDGLK-NKDLASWNAIIAAYG 515



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 107/452 (23%), Positives = 183/452 (40%), Gaps = 73/452 (16%)

Query: 16  SSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMP-----E 70
           S +  YSK G++ EA+ LF    ++N VS+N M+ G    G + EA  LF EM      E
Sbjct: 174 SLVDMYSKCGYLTEAQMLFDKNNRKNAVSWNTMIGGLCTKGYIFEAFNLFREMQMQEDIE 233

Query: 71  RNVVSWTAMICGLADAGRVCEARKL----FEEMPERNVVSWNSMVVGLIRNGELNEARKV 126
            N V+   ++    +  ++   ++L         + + +  N  V    + G L  A +V
Sbjct: 234 VNEVTVLNILPACLEISQLRSLKELHGYSIRHGFQYDELVANGFVAAYAKCGMLICAERV 293

Query: 127 FNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVV-TW---------------- 169
           F SM  K V SWNA+I G  +     +A+ L+ +M    +V  W                
Sbjct: 294 FYSMETKTVNSWNALIGGCAQNGDPRKALNLYIQMTYSGLVPDWFTIGSLLLASAHLKSL 353

Query: 170 ----------------------TSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGF 207
                                  S++S Y   GE      LF  M  K+ VSW AMI G+
Sbjct: 354 RYGKEVHGFVLRHGLEIDSFIGISLLSLYIHCGESSSARLLFDGMEEKSSVSWNAMISGY 413

Query: 208 AWNGFHKESLLLFIEMKGICDNGNNCNVQ------SCNSMINGYIRFGRLEEAQNLFDTV 261
           + NG  +++L+LF ++  + D     ++       +C+      +R G+      L   +
Sbjct: 414 SQNGLPEDALILFRKL--VSDGFQPSDIAVVSVLGACSQ--QSALRLGKETHCYAL-KAL 468

Query: 262 PVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFM 321
            + D     S ID Y   G +  +  +F  + ++D  +W A+I+    +    E+  LF 
Sbjct: 469 LMEDVFVACSTIDMYAKSGCIKESRSVFDGLKNKDLASWNAIIAAYGVHGDGEESIELFE 528

Query: 322 EMRAHGVPPLNATFSVLFGAAGATANIDLG-------RQIHCVLMKTESESDLILENCLI 374
            MR  G  P   TF  +         ++ G       +  H +  K E  +      C++
Sbjct: 529 RMRKVGQMPDGFTFIGILTVCSHAGLVEEGLKYFNEMQNFHGIEPKLEHYA------CVM 582

Query: 375 SMYAKCGVIDNAYNIFSNMVSR-DLVSWNSMV 405
            M  + G +D+A  +   M  + D   W+S++
Sbjct: 583 DMLGRAGRLDDALRLVHEMPEQPDSRVWSSLL 614



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 58/217 (26%), Positives = 104/217 (47%), Gaps = 23/217 (10%)

Query: 309 QNELFVEATYLFMEMRAHG-VPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDL 367
           +NEL+ +A  +F+++         N TF  +  A   + +  LG  IH +++K     D+
Sbjct: 7   RNELYSDAIDMFVKLITDTEFNADNFTFPCVIKACTGSLDRGLGEVIHGMVIKMGLLLDV 66

Query: 368 ILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESML-- 425
            + N LI+MY K G +D A  +F  M  R+LVSWNS++ GFS +G + +   +   M+  
Sbjct: 67  FVGNALIAMYGKFGFVDAAVKVFHYMPVRNLVSWNSIISGFSENGFSKDCFDMLVEMMAG 126

Query: 426 ESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYV----SMINLLGR 481
           E G  P+  T + +L  C+    V  G  +         ++ G    V    S++++  +
Sbjct: 127 EEGLLPDIATLVTVLPVCAREVDVQMGIRIHG-----LAVKLGLSEDVRVNNSLVDMYSK 181

Query: 482 AGKIKEAEEFVLRLPFEPDHR----IWGALLGACGFC 514
            G + EA+     + F+ ++R     W  ++G  G C
Sbjct: 182 CGYLTEAQ-----MLFDKNNRKNAVSWNTMIG--GLC 211


>gi|224141479|ref|XP_002324099.1| predicted protein [Populus trichocarpa]
 gi|222867101|gb|EEF04232.1| predicted protein [Populus trichocarpa]
          Length = 676

 Score =  307 bits (787), Expect = 9e-81,   Method: Compositional matrix adjust.
 Identities = 165/523 (31%), Positives = 284/523 (54%), Gaps = 9/523 (1%)

Query: 83  LADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVIS----W 138
           L    R+ EA ++  ++ + +   +++++   I++  L + +KV   + +   +      
Sbjct: 49  LCQQNRLKEALQILHQIDKPSASVYSTLIQSCIKSRLLQQGKKVHQHIKLSGFVPGLFIL 108

Query: 139 NAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVV 198
           N ++  Y +C  + ++  LF+EM ER++ +W  +ISGY + G ++E   LF +MP ++  
Sbjct: 109 NRLLEMYAKCDSLMDSQKLFDEMPERDLCSWNILISGYAKMGLLQEAKSLFDKMPERDNF 168

Query: 199 SWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYI---RFGRLEEAQ 255
           SWTAMI G+  +    E+L LF  MK   ++ +N    S        +   R G+ E   
Sbjct: 169 SWTAMISGYVRHDRPNEALELFRMMKRSDNSKSNKFTVSSALAAAAAVPCLRIGK-EIHG 227

Query: 256 NLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVE 315
            +  T    DE+ W+++ D Y   G +  A ++F  M DRD V WTAMI    Q+    E
Sbjct: 228 YIMRTGLDSDEVVWSALSDMYGKCGSIEEARHIFDKMVDRDIVTWTAMIDRYFQDGRRKE 287

Query: 316 ATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLIS 375
              LF ++   G+ P   TFS +  A     + +LG+++H  + +   +      + L+ 
Sbjct: 288 GFDLFADLLRSGIRPNEFTFSGVLNACANQTSEELGKKVHGYMTRVGFDPFSFAASALVH 347

Query: 376 MYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVT 435
           MY+KCG + +A  +F      DL SW S++ G++ +G  +E ++ FE +++SGT P+ +T
Sbjct: 348 MYSKCGNMVSAERVFKETPQPDLFSWTSLIAGYAQNGQPDEAIRYFELLVKSGTQPDHIT 407

Query: 436 FLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRL 495
           F+G+LSAC+HAGLV +G + F+++ + Y +    +HY  +I+LL R+G+  EAE  + ++
Sbjct: 408 FVGVLSACAHAGLVDKGLDYFHSIKEQYGLTHTADHYACIIDLLARSGQFDEAENIISKM 467

Query: 496 PFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEE 555
             +PD  +W +LLG C    GN ++A+ AA+ L E++P N   +V L NIYA +G   E 
Sbjct: 468 SMKPDKFLWASLLGGCRI-HGNLKLAQRAAEALFEIEPENPATYVTLANIYATAGMWSEV 526

Query: 556 HKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
            K+R  M  +GV K PG SW+     + +FL GD    +  EI
Sbjct: 527 AKIRKTMDDRGVVKKPGLSWIAIKRDVHVFLVGDDSHPKSKEI 569



 Score =  158 bits (399), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 121/440 (27%), Positives = 204/440 (46%), Gaps = 37/440 (8%)

Query: 46  NAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVV 105
           N +L  + +   L ++++LF+EMPER++ SW  +I G A  G + EA+ LF++MPER+  
Sbjct: 109 NRLLEMYAKCDSLMDSQKLFDEMPERDLCSWNILISGYAKMGLLQEAKSLFDKMPERDNF 168

Query: 106 SWNSMVVGLIRNGELNEARKVF-------NSMPIKNVISWNAMIAGYVECCMMGEAI--V 156
           SW +M+ G +R+   NEA ++F       NS   K  +S     A  V C  +G+ I   
Sbjct: 169 SWTAMISGYVRHDRPNEALELFRMMKRSDNSKSNKFTVSSALAAAAAVPCLRIGKEIHGY 228

Query: 157 LFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKES 216
           +     + + V W+++   Y + G +EE   +F +M  +++V+WTAMI  +  +G  KE 
Sbjct: 229 IMRTGLDSDEVVWSALSDMYGKCGSIEEARHIFDKMVDRDIVTWTAMIDRYFQDGRRKEG 288

Query: 217 LLLFIEM--KGICDNG-------NNCNVQSCNSM---INGYI-RFGRLEEAQNLFDTVPV 263
             LF ++   GI  N        N C  Q+   +   ++GY+ R G        FD    
Sbjct: 289 FDLFADLLRSGIRPNEFTFSGVLNACANQTSEELGKKVHGYMTRVG--------FDPF-- 338

Query: 264 RDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEM 323
               + ++++  Y   G + +A  +F   P  D  +WT++I+G  QN    EA   F  +
Sbjct: 339 --SFAASALVHMYSKCGNMVSAERVFKETPQPDLFSWTSLIAGYAQNGQPDEAIRYFELL 396

Query: 324 RAHGVPPLNATFSVLFGAAGATANIDLGRQ-IHCVLMKTESESDLILENCLISMYAKCGV 382
              G  P + TF  +  A      +D G    H +  +           C+I + A+ G 
Sbjct: 397 VKSGTQPDHITFVGVLSACAHAGLVDKGLDYFHSIKEQYGLTHTADHYACIIDLLARSGQ 456

Query: 383 IDNAYNIFSNMVSR-DLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILS 441
            D A NI S M  + D   W S++ G   HG      +  E++ E     N  T++ + +
Sbjct: 457 FDEAENIISKMSMKPDKFLWASLLGGCRIHGNLKLAQRAAEALFEIEPE-NPATYVTLAN 515

Query: 442 ACSHAGLVSRGWELFNAMFD 461
             + AG+ S   ++   M D
Sbjct: 516 IYATAGMWSEVAKIRKTMDD 535


>gi|297800922|ref|XP_002868345.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297314181|gb|EFH44604.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 1047

 Score =  307 bits (787), Expect = 9e-81,   Method: Compositional matrix adjust.
 Identities = 194/624 (31%), Positives = 299/624 (47%), Gaps = 55/624 (8%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEM------PER 71
           ++ Y   G +  A+ +F  M QR+ V+YN +++G  Q G   +A  LF+ M      P+ 
Sbjct: 313 VSLYFHLGSLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMQLDGLEPDS 372

Query: 72  NVVSWTAMIC-------------------GLADAGRV----------CE----ARKLFEE 98
           N ++   + C                   G A   ++          C     A   F E
Sbjct: 373 NTLASLVVACSSDGTLFSGQQLHAYTTKLGFASNDKIEGALLNLYAKCSDIETALNYFLE 432

Query: 99  MPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCM------MG 152
               NVV WN M+V      +L  + ++F  M I+ ++         ++ C+      +G
Sbjct: 433 TEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELG 492

Query: 153 EAI--VLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWN 210
           E I   + +   + N    + +I  Y + G+++  + +  R   K+VVSWT MI G+   
Sbjct: 493 EQIHSQIIKTSFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQY 552

Query: 211 GFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVR----DE 266
            F  ++L  F +M    D G   +     + ++       L+E Q +     V     D 
Sbjct: 553 NFDDKALTTFRQM---LDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDL 609

Query: 267 ISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAH 326
               +++  Y   G +  AY  F      D +AW A++SG  Q+    EA  +F  M   
Sbjct: 610 PFQNALVTLYSKCGNIEEAYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFARMNRE 669

Query: 327 GVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNA 386
           G+   N TF     AA  TAN+  G+Q+H V+ KT  +S+  + N +ISMYAKCG I +A
Sbjct: 670 GIDSNNFTFGSAVKAASETANMKQGKQVHAVITKTGYDSETEVCNAIISMYAKCGSISDA 729

Query: 387 YNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHA 446
              F  +  ++ VSWN+M+  +S HG  +E L  F+ M+ S   PN VT +G+LSACSH 
Sbjct: 730 KKQFLELSMKNEVSWNAMINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSACSHI 789

Query: 447 GLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGA 506
           GLV +G E F +M   Y + P PEHYV ++++L RAG +  A++F+L +P EPD  +W  
Sbjct: 790 GLVDKGIEYFESMNTEYGLAPKPEHYVCVVDMLTRAGLLSRAKDFILEMPIEPDALVWRT 849

Query: 507 LLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKG 566
           LL AC     N EI E AA  LLEL+P ++  +V+L N+YA   +       R  M  KG
Sbjct: 850 LLSAC-VVHKNMEIGEFAAHHLLELEPEDSATYVLLSNLYAVCRKWDARDLTRQKMKEKG 908

Query: 567 VRKVPGCSWLMRNGGIQMFLSGDK 590
           V+K PG SW+     I  F  GD+
Sbjct: 909 VKKEPGQSWIEVKNSIHSFYVGDQ 932



 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 120/470 (25%), Positives = 210/470 (44%), Gaps = 30/470 (6%)

Query: 48  MLSGFLQ-NGRLSEARRLFEEMPERNVVSWTAMICGLAD----AGRVCEARKLFEEMPER 102
           +L G L+ NG L E R+L  ++ +    +   +   L D     G +  A K+F+EMPER
Sbjct: 73  LLEGCLKTNGSLDEGRKLHSQILKLGFDNNACLSEKLLDFYLFKGDLDGALKVFDEMPER 132

Query: 103 NVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEME 162
            + +WN M+  L       +   +F  M  +NV       +G +E C  G   V F+ +E
Sbjct: 133 TIFTWNKMIKELASRSLSGKVFCLFGRMVNENVTPNEGTFSGVLEACRGGS--VAFDVVE 190

Query: 163 E-----------RNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNG 211
           +           ++ +    +I  Y R G V+    +F  +  K+  SW AMI G + N 
Sbjct: 191 QIHARIIYQGLGKSTIVCNPLIDLYSRNGFVDRARRVFDGLYLKDHSSWVAMISGLSKNE 250

Query: 212 FHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVP----VRDEI 267
              E++ LF +M  +   G      + +S+++   +   LE  + L   V       D  
Sbjct: 251 CEVEAIRLFCDMYVL---GIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTY 307

Query: 268 SWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHG 327
              +++  Y  +G + +A ++F NM  RDAV +  +I+GL Q     +A  LF  M+  G
Sbjct: 308 VCNALVSLYFHLGSLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMQLDG 367

Query: 328 VPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAY 387
           + P + T + L  A  +   +  G+Q+H    K    S+  +E  L+++YAKC  I+ A 
Sbjct: 368 LEPDSNTLASLVVACSSDGTLFSGQQLHAYTTKLGFASNDKIEGALLNLYAKCSDIETAL 427

Query: 388 NIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAG 447
           N F      ++V WN M++ +        + ++F  M      PN  T+  IL  C   G
Sbjct: 428 NYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLG 487

Query: 448 LVSRGWELFNAMFDVYKIQPGPEHYVS--MINLLGRAGKIKEAEEFVLRL 495
            +  G ++ +    + K       YV   +I++  + GK+  A + ++R 
Sbjct: 488 DLELGEQIHS---QIIKTSFQLNAYVCSVLIDMYAKLGKLDTAWDILIRF 534



 Score =  139 bits (349), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 113/424 (26%), Positives = 194/424 (45%), Gaps = 44/424 (10%)

Query: 100 PERNVVSWNSMVVGLIR-NGELNEARKVFNSMPIKNVISWNA-----MIAGYVECCMMGE 153
           P    + W  ++ G ++ NG L+E RK+ +S  +K     NA     ++  Y+    +  
Sbjct: 65  PNHQTLKW--LLEGCLKTNGSLDEGRKL-HSQILKLGFDNNACLSEKLLDFYLFKGDLDG 121

Query: 154 AIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFH 213
           A+ +F+EM ER + TW  MI          + +CLF RM  +NV        G       
Sbjct: 122 ALKVFDEMPERTIFTWNKMIKELASRSLSGKVFCLFGRMVNENVTPNEGTFSGV------ 175

Query: 214 KESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEE--AQNLFDTVPVRDEISWTS 271
                                +++C     G + F  +E+  A+ ++  +  +  I    
Sbjct: 176 ---------------------LEACRG---GSVAFDVVEQIHARIIYQGLG-KSTIVCNP 210

Query: 272 MIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPL 331
           +ID Y   G V  A  +F  +  +D  +W AMISGL +NE  VEA  LF +M   G+ P 
Sbjct: 211 LIDLYSRNGFVDRARRVFDGLYLKDHSSWVAMISGLSKNECEVEAIRLFCDMYVLGIMPT 270

Query: 332 NATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFS 391
              FS +  A     ++++G Q+H +++K    SD  + N L+S+Y   G + +A +IFS
Sbjct: 271 PYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGSLISAEHIFS 330

Query: 392 NMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSR 451
           NM  RD V++N+++ G S  G   + +++F+ M   G  P+S T   ++ ACS  G +  
Sbjct: 331 NMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMQLDGLEPDSNTLASLVVACSSDGTLFS 390

Query: 452 GWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGAC 511
           G +L +A           +   +++NL  +   I+ A  + L    E +  +W  +L A 
Sbjct: 391 GQQL-HAYTTKLGFASNDKIEGALLNLYAKCSDIETALNYFLETEVE-NVVLWNVMLVAY 448

Query: 512 GFCE 515
           G  +
Sbjct: 449 GLLD 452



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 119/518 (22%), Positives = 223/518 (43%), Gaps = 64/518 (12%)

Query: 30  AKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRV 89
           A+ ++Q + +  +V  N ++  + +NG +  ARR+F+ +  ++  SW AMI GL+     
Sbjct: 194 ARIIYQGLGKSTIVC-NPLIDLYSRNGFVDRARRVFDGLYLKDHSSWVAMISGLSKNECE 252

Query: 90  CEARKLFEEMPERNVVSWN---SMVVGLIRNGELNEARKVFNSMPIK-----NVISWNAM 141
            EA +LF +M    ++      S V+   +  E  E  +  + + +K     +    NA+
Sbjct: 253 VEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNAL 312

Query: 142 IAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRM------PRK 195
           ++ Y     +  A  +F  M +R+ VT+ ++I+G  + G  E+   LF+RM      P  
Sbjct: 313 VSLYFHLGSLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMQLDGLEPDS 372

Query: 196 NVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQ 255
           N ++   +        F  + L  +    G   N      +   +++N Y +   +E A 
Sbjct: 373 NTLASLVVACSSDGTLFSGQQLHAYTTKLGFASND-----KIEGALLNLYAKCSDIETAL 427

Query: 256 NLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVE 315
           N F    V + + W  M+  Y  +  + N++ +F                          
Sbjct: 428 NYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFR------------------------- 462

Query: 316 ATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLIS 375
                 +M+   + P   T+  +        +++LG QIH  ++KT  + +  + + LI 
Sbjct: 463 ------QMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTSFQLNAYVCSVLID 516

Query: 376 MYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVT 435
           MYAK G +D A++I      +D+VSW +M+ G++ +   ++ L  F  ML+ G   + V 
Sbjct: 517 MYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVG 576

Query: 436 FLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRL 495
               +SAC+    +  G ++ +A   V           +++ L  + G I+EA      L
Sbjct: 577 LTNAVSACAGLQALKEGQQI-HAQACVSGFSSDLPFQNALVTLYSKCGNIEEA-----YL 630

Query: 496 PFEP----DHRIWGALLGACGFCE-GNAEIAEHAAKRL 528
            FE     D+  W AL+   GF + GN E A     R+
Sbjct: 631 AFEQTEAGDNIAWNALVS--GFQQSGNNEEALRVFARM 666


>gi|357131819|ref|XP_003567531.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g39530-like [Brachypodium distachyon]
          Length = 822

 Score =  307 bits (787), Expect = 9e-81,   Method: Compositional matrix adjust.
 Identities = 207/651 (31%), Positives = 314/651 (48%), Gaps = 109/651 (16%)

Query: 15  TSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEM------ 68
           T+ I  Y+K G ID A  +F  +P +N V++ A+++G+ Q G+   A  LF +M      
Sbjct: 153 TALINLYAKVGCIDAAMLVFDALPVKNPVTWTAVITGYSQIGQGGVALELFGKMGLDGVR 212

Query: 69  PERNVVSWTAMIC---GLADAGR------------------------VCE------ARKL 95
           P+R V++     C   G  + GR                         C+      ARKL
Sbjct: 213 PDRFVLASAVSACSALGFLEGGRQTHGYAYRIAVETDASVINALIDLYCKCSRLSLARKL 272

Query: 96  FEEMPERNVVSWNSMVVGLIRNGELNEAR-------------KVFNSMPIKNVIS----- 137
           F+ M  RN+VSW +M+ G ++N    EA               VF    I N        
Sbjct: 273 FDCMENRNLVSWTTMIAGYMQNSCDAEAMAMFWQLSQEGWQPDVFACASILNSCGSLAAI 332

Query: 138 W---------------------NAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGY 176
           W                     N++I  Y +C  + EA  +FE + E + +++ +MI GY
Sbjct: 333 WQGRQVHAHAIKANLESDEYVKNSLIDMYAKCEHLTEARAVFEALAEDDAISYNAMIEGY 392

Query: 177 CRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQ 236
            R G++     +F +M   ++                K S L F+ + G+  + +   + 
Sbjct: 393 SRLGDLAGAIDVFSKMRYCSL----------------KPSPLTFVSLLGVSSSQSAIEL- 435

Query: 237 SCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRD 296
             +  I+G I    ++   +L       D  + +S+ID Y     V +A  +F+ M +RD
Sbjct: 436 --SKQIHGLI----VKSGTSL-------DLYAGSSLIDVYSKFSLVEDAKAVFNLMHNRD 482

Query: 297 AVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHC 356
            V W AMI GL QNE   EA  LF +++  G+ P   TF  L   A    ++  G+Q H 
Sbjct: 483 MVIWNAMIFGLAQNEQGEEAVKLFNQLQVSGLAPNEFTFVALVTVASTLVSMFHGQQFHA 542

Query: 357 VLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANE 416
            ++K  ++SD  + N LI MYAKCG I     +F + + +D++ WNSM+  ++ HG A E
Sbjct: 543 QIIKAGADSDHHVSNALIDMYAKCGFIKEGRLLFESTLGKDVICWNSMISTYAQHGQAEE 602

Query: 417 TLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMI 476
            L VF  M  +G  PN VTF+G+LSAC+HAGLV  G   F+ M   Y I+PG EHY S++
Sbjct: 603 ALYVFRMMGGTGVEPNYVTFVGVLSACAHAGLVDEGLRHFDFMKTKYAIEPGTEHYASVV 662

Query: 477 NLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNA 536
           NL GR+GK+  A+EF+ R+P EP   +W +LL AC    GN EI  +A +  L  DP ++
Sbjct: 663 NLFGRSGKLHAAKEFIERMPIEPAAAVWRSLLSACHLF-GNVEIGRYATEMALLADPADS 721

Query: 537 PAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLS 587
              V++ NIYA+ G   +  KLR  M   GV K PG SW+     +  F++
Sbjct: 722 GPSVLMSNIYASRGLWSDAQKLRQGMDCAGVVKEPGYSWIEVMKEVHTFIA 772



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 144/540 (26%), Positives = 243/540 (45%), Gaps = 99/540 (18%)

Query: 46  NAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFE-------- 97
           N +L  + + GR+ +ARRLF+ MP +N+VSW + I   A  G   +A  LF         
Sbjct: 50  NLLLRAYSKLGRVRDARRLFDRMPHKNLVSWGSAISMHAQHGCEEDAVALFAAFQRASGG 109

Query: 98  EMP-------------ERNVVSWNSMV------VGLIRN--------------GELNEAR 124
           E P             +   VS+   V      +GL  N              G ++ A 
Sbjct: 110 EAPNEFLLASALRACAQSRAVSFGQQVHGVAVRIGLDGNVYVGTALINLYAKVGCIDAAM 169

Query: 125 KVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEME---------------------- 162
            VF+++P+KN ++W A+I GY +    G A+ LF +M                       
Sbjct: 170 LVFDALPVKNPVTWTAVITGYSQIGQGGVALELFGKMGLDGVRPDRFVLASAVSACSALG 229

Query: 163 -----------------ERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIG 205
                            E +     ++I  YC+   +     LF  M  +N+VSWT MI 
Sbjct: 230 FLEGGRQTHGYAYRIAVETDASVINALIDLYCKCSRLSLARKLFDCMENRNLVSWTTMIA 289

Query: 206 GFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMIN-----GYIRFGRLEEAQNLFDT 260
           G+  N    E++ +F ++      G   +V +C S++N       I  GR   A  +   
Sbjct: 290 GYMQNSCDAEAMAMFWQLS---QEGWQPDVFACASILNSCGSLAAIWQGRQVHAHAIKAN 346

Query: 261 VPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLF 320
           +   DE    S+ID Y     ++ A  +F  + + DA+++ AMI G  +      A  +F
Sbjct: 347 LE-SDEYVKNSLIDMYAKCEHLTEARAVFEALAEDDAISYNAMIEGYSRLGDLAGAIDVF 405

Query: 321 MEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKC 380
            +MR   + P   TF  L G + + + I+L +QIH +++K+ +  DL   + LI +Y+K 
Sbjct: 406 SKMRYCSLKPSPLTFVSLLGVSSSQSAIELSKQIHGLIVKSGTSLDLYAGSSLIDVYSKF 465

Query: 381 GVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGIL 440
            ++++A  +F+ M +RD+V WN+M+ G + +    E +K+F  +  SG  PN  TF+ ++
Sbjct: 466 SLVEDAKAVFNLMHNRDMVIWNAMIFGLAQNEQGEEAVKLFNQLQVSGLAPNEFTFVALV 525

Query: 441 SACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVS--MINLLGRAGKIKEAEEFVLRLPFE 498
           +  S    +  G + F+A   + K     +H+VS  +I++  + G IKE      RL FE
Sbjct: 526 TVASTLVSMFHGQQ-FHA--QIIKAGADSDHHVSNALIDMYAKCGFIKEG-----RLLFE 577



 Score = 55.5 bits (132), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 41/148 (27%), Positives = 66/148 (44%), Gaps = 7/148 (4%)

Query: 355 HCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLA 414
           H   + T +  DL L N L+  Y+K G + +A  +F  M  ++LVSW S +   + HG  
Sbjct: 34  HARAVVTGALPDLFLANLLLRAYSKLGRVRDARRLFDRMPHKNLVSWGSAISMHAQHGCE 93

Query: 415 NETLKVFESMLES--GTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHY 472
            + + +F +   +  G  PN       L AC+ +  VS G ++        +I      Y
Sbjct: 94  EDAVALFAAFQRASGGEAPNEFLLASALRACAQSRAVSFGQQVHGV---AVRIGLDGNVY 150

Query: 473 V--SMINLLGRAGKIKEAEEFVLRLPFE 498
           V  ++INL  + G I  A      LP +
Sbjct: 151 VGTALINLYAKVGCIDAAMLVFDALPVK 178


>gi|449470293|ref|XP_004152852.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g30700-like [Cucumis sativus]
          Length = 788

 Score =  307 bits (787), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 199/647 (30%), Positives = 319/647 (49%), Gaps = 75/647 (11%)

Query: 16  SSITKYSKRGF----IDEAKALFQLMPQRNVVSYNAMLSGFLQNG--------------- 56
           SSITK + + F    +   + LF  + + ++  +N ++ GF  NG               
Sbjct: 47  SSITKLTHKFFDLGAVAHVRQLFNKVSKPDLFLFNVLIRGFSDNGLPKSSIFLYTHLRKK 106

Query: 57  ------------RLSEARRLFEEMP-------------ERNVVSWTAMICGLADAGRVCE 91
                        +S A RL +E                 N+   +A++       R   
Sbjct: 107 TNLRPDNFTYAFAISAASRLEDERVGVLLHAHSIVDGVASNLFVGSAIVDLYFKFTRAEL 166

Query: 92  ARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVF----------NSMPIKNVISWNAM 141
           ARK+F+ MPER+ V WN+M+ G  RN    ++ +VF          +S  +  V++  A 
Sbjct: 167 ARKVFDVMPERDTVLWNTMISGFSRNSYFEDSIRVFVDMLDVGLSFDSTTLATVLTAVAE 226

Query: 142 IAGY-----VECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKN 196
           +  Y     ++C    + +         +V   T +IS Y + G+  +G  LF ++ + +
Sbjct: 227 LQEYRLGMGIQCLASKKGL-------HSDVYVLTGLISLYSKCGKSCKGRILFDQIDQPD 279

Query: 197 VVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEA-- 254
           ++S+ AMI G+ +N   + ++ LF E+     +G   N  +   +I  Y+ F  L+ +  
Sbjct: 280 LISYNAMISGYTFNHETESAVTLFRELLA---SGQRVNSSTLVGLIPVYLPFNHLQLSRL 336

Query: 255 -QNLFDTVPVRDEISW-TSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNEL 312
            QNL   + +  + S  T++   Y  + +V  A  LF   P++   +W AMISG  QN L
Sbjct: 337 IQNLSLKIGIILQPSVSTALTTVYCRLNEVQFARQLFDESPEKSLASWNAMISGYTQNGL 396

Query: 313 FVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENC 372
              A  LF EM    + P   T + +  A      + +G+ +H ++     ES++ +   
Sbjct: 397 TDRAISLFQEMMPQ-LSPNPVTVTSILSACAQLGALSIGKWVHGLIKSERLESNVYVSTA 455

Query: 373 LISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPN 432
           L+ MYAKCG I  A  +F  MV +++V+WN+M+ G+  HG   E LK+F  ML+SG  P 
Sbjct: 456 LVDMYAKCGSIVEARQLFDLMVDKNVVTWNAMITGYGLHGHGKEALKLFYEMLQSGIPPT 515

Query: 433 SVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFV 492
            VTFL IL ACSH+GLVS G E+F++M + Y  QP  EHY  M+++LGRAG++  A EF+
Sbjct: 516 GVTFLSILYACSHSGLVSEGNEIFHSMANNYGFQPMSEHYACMVDILGRAGQLTNALEFI 575

Query: 493 LRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRH 552
            R+P EP   +WGALLGAC     N E+A  A+KRL +LDP N   +V+L NIY+     
Sbjct: 576 ERMPLEPGPAVWGALLGAC-MIHKNTEMANVASKRLFQLDPENVGYYVLLSNIYSTDRNF 634

Query: 553 VEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEIL 599
            +   +R  +  + + K PGC+ +  +    +F SGD+   Q   I 
Sbjct: 635 PKAASVRQVVKKRKLAKTPGCTLIEIDDQQYVFTSGDRSHPQATAIF 681



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 94/353 (26%), Positives = 148/353 (41%), Gaps = 75/353 (21%)

Query: 14  LTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNV 73
           LT  I+ YSK G   + + LF  + Q +++SYNAM+SG+  N     A  LF E+     
Sbjct: 252 LTGLISLYSKCGKSCKGRILFDQIDQPDLISYNAMISGYTFNHETESAVTLFRELLASGQ 311

Query: 74  VSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLI--------------RNGE 119
              ++ + GL            F  +    ++   S+ +G+I              R  E
Sbjct: 312 RVNSSTLVGL------IPVYLPFNHLQLSRLIQNLSLKIGIILQPSVSTALTTVYCRLNE 365

Query: 120 LNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEME----------------- 162
           +  AR++F+  P K++ SWNAMI+GY +  +   AI LF+EM                  
Sbjct: 366 VQFARQLFDESPEKSLASWNAMISGYTQNGLTDRAISLFQEMMPQLSPNPVTVTSILSAC 425

Query: 163 ---------------------ERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWT 201
                                E NV   T+++  Y + G + E   LF  M  KNVV+W 
Sbjct: 426 AQLGALSIGKWVHGLIKSERLESNVYVSTALVDMYAKCGSIVEARQLFDLMVDKNVVTWN 485

Query: 202 AMIGGFAWNGFHKESLLLFIEM--KGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFD 259
           AMI G+  +G  KE+L LF EM   GI   G      +  S++      G + E   +F 
Sbjct: 486 AMITGYGLHGHGKEALKLFYEMLQSGIPPTG-----VTFLSILYACSHSGLVSEGNEIFH 540

Query: 260 TV-------PVRDEISWTSMIDGYLSVGQVSNAYYLFHNMP-DRDAVAWTAMI 304
           ++       P+ +   +  M+D     GQ++NA      MP +     W A++
Sbjct: 541 SMANNYGFQPMSEH--YACMVDILGRAGQLTNALEFIERMPLEPGPAVWGALL 591



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 62/240 (25%), Positives = 97/240 (40%), Gaps = 48/240 (20%)

Query: 15  TSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEM------ 68
           T+  T Y +   +  A+ LF   P++++ S+NAM+SG+ QNG    A  LF+EM      
Sbjct: 354 TALTTVYCRLNEVQFARQLFDESPEKSLASWNAMISGYTQNGLTDRAISLFQEMMPQLSP 413

Query: 69  -P-------------------------------ERNVVSWTAMICGLADAGRVCEARKLF 96
            P                               E NV   TA++   A  G + EAR+LF
Sbjct: 414 NPVTVTSILSACAQLGALSIGKWVHGLIKSERLESNVYVSTALVDMYAKCGSIVEARQLF 473

Query: 97  EEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECC----MMG 152
           + M ++NVV+WN+M+ G   +G   EA K+F  M    +          +  C    ++ 
Sbjct: 474 DLMVDKNVVTWNAMITGYGLHGHGKEALKLFYEMLQSGIPPTGVTFLSILYACSHSGLVS 533

Query: 153 EAIVLFEEMEERNVVT-----WTSMISGYCRAGEVEEGYCLFRRMP-RKNVVSWTAMIGG 206
           E   +F  M            +  M+    RAG++        RMP       W A++G 
Sbjct: 534 EGNEIFHSMANNYGFQPMSEHYACMVDILGRAGQLTNALEFIERMPLEPGPAVWGALLGA 593



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 46/181 (25%), Positives = 86/181 (47%), Gaps = 1/181 (0%)

Query: 265 DEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMR 324
           D  S T +   +  +G V++   LF+ +   D   +  +I G   N L   + +L+  +R
Sbjct: 45  DLSSITKLTHKFFDLGAVAHVRQLFNKVSKPDLFLFNVLIRGFSDNGLPKSSIFLYTHLR 104

Query: 325 AH-GVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVI 383
               + P N T++    AA    +  +G  +H   +     S+L + + ++ +Y K    
Sbjct: 105 KKTNLRPDNFTYAFAISAASRLEDERVGVLLHAHSIVDGVASNLFVGSAIVDLYFKFTRA 164

Query: 384 DNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSAC 443
           + A  +F  M  RD V WN+M+ GFS +    ++++VF  ML+ G   +S T   +L+A 
Sbjct: 165 ELARKVFDVMPERDTVLWNTMISGFSRNSYFEDSIRVFVDMLDVGLSFDSTTLATVLTAV 224

Query: 444 S 444
           +
Sbjct: 225 A 225


>gi|255594521|ref|XP_002536106.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223520840|gb|EEF26277.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 519

 Score =  307 bits (787), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 175/520 (33%), Positives = 284/520 (54%), Gaps = 47/520 (9%)

Query: 37  MPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLF 96
           MP +   S+N +L+G+ + G L++A  +F+E+P+R+ VSWT MI G    GR   A K+F
Sbjct: 1   MPVKTTFSWNTILTGYAKLGTLAKAHSVFDEIPDRDSVSWTTMIVGYNQMGRFESAIKMF 60

Query: 97  EEMPERNVVSWNSMVVGLIRN----GELNEARKVFNSMPIKNVIS-----WNAMIAGYVE 147
             M +  V+     V  +  +    G L+  +K+ +S  IK  +S      N+++  Y +
Sbjct: 61  VAMMKDKVLPTQFTVTNVFASCAALGALDIGKKI-HSFVIKLGLSGCVPVANSLLNMYAK 119

Query: 148 CCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGF 207
                 A ++F+ M  R++ +W  MIS +   G  +     F +M  ++VV+W +MI G+
Sbjct: 120 AGDSVMAKIVFDRMRLRSISSWNIMISLHMHGGRADLALAQFEQMSERDVVTWNSMITGY 179

Query: 208 AWNGFHKESLLLFIEM---------------KGICDNGNNCNVQS--------------- 237
           + +GF KE+L LF  M                  C N  N N+                 
Sbjct: 180 SQHGFDKEALELFSRMLEDSLKPDRFTLASILSACANIENLNLGKQIHSYIIRTEFDISG 239

Query: 238 --CNSMINGYIRFGRLEEAQNLFDTVPVRD--EISWTSMIDGYLSVGQVSNAYYLFHNMP 293
              N++I+ Y + G +E AQ++ +   + D   I++T+++DGY+ +G ++ A ++F ++ 
Sbjct: 240 VVQNALISMYAKTGGVEIAQSIVEQSGISDLNVIAFTALLDGYVKLGNITPARHIFDSLK 299

Query: 294 DRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQ 353
           D D VAWTAMI G VQN L  +A  LF  M   G  P + T + +   +   A+++ G+Q
Sbjct: 300 DSDVVAWTAMIVGYVQNGLNDDAMELFRIMAKEGPRPNSFTLAAMLSVSSNVASLNHGKQ 359

Query: 354 IHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSR--DLVSWNSMVMGFSHH 411
           IH   +++     + + N LI+MYAK G I +A  +F N++ R  D VSW SM++    H
Sbjct: 360 IHASAIRSGENLSVSVGNALITMYAKAGSITDAQQVF-NLIQRNKDTVSWTSMIIALGQH 418

Query: 412 GLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEH 471
           GL  E++++FE ML  G  P+ +T++G+LSAC+H GLV +G   FN M  ++KI+P   H
Sbjct: 419 GLGQESIELFEKMLALGIKPDHITYVGVLSACTHVGLVEQGRGYFNLMTSIHKIEPTLSH 478

Query: 472 YVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGAC 511
           Y  MI+L GRAG ++EA  F+  +P EPD   WG+LL +C
Sbjct: 479 YACMIDLFGRAGLLQEAFSFIENMPIEPDVIAWGSLLSSC 518



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 110/436 (25%), Positives = 198/436 (45%), Gaps = 78/436 (17%)

Query: 16  SSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVS 75
           S +  Y+K G    AK +F  M  R++ S+N M+S  +  GR   A   FE+M ER+VV+
Sbjct: 112 SLLNMYAKAGDSVMAKIVFDRMRLRSISSWNIMISLHMHGGRADLALAQFEQMSERDVVT 171

Query: 76  WTAMICGLADAGRVCEARKLFEEMPERNV----VSWNSMVVGLIRNGELNEARKVFNSM- 130
           W +MI G +  G   EA +LF  M E ++     +  S++        LN  +++ + + 
Sbjct: 172 WNSMITGYSQHGFDKEALELFSRMLEDSLKPDRFTLASILSACANIENLNLGKQIHSYII 231

Query: 131 ----PIKNVISWNAMIAGYVEC--CMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEE 184
                I  V+  NA+I+ Y +     + ++IV    + + NV+ +T+++ GY + G +  
Sbjct: 232 RTEFDISGVVQ-NALISMYAKTGGVEIAQSIVEQSGISDLNVIAFTALLDGYVKLGNITP 290

Query: 185 GYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLF---------------IEMKGICDN 229
              +F  +   +VV+WTAMI G+  NG + +++ LF                 M  +  N
Sbjct: 291 ARHIFDSLKDSDVVAWTAMIVGYVQNGLNDDAMELFRIMAKEGPRPNSFTLAAMLSVSSN 350

Query: 230 -----------------GNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPV-RDEISWTS 271
                            G N +V   N++I  Y + G + +AQ +F+ +   +D +SWTS
Sbjct: 351 VASLNHGKQIHASAIRSGENLSVSVGNALITMYAKAGSITDAQQVFNLIQRNKDTVSWTS 410

Query: 272 MIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPL 331
           MI   +++GQ                        GL Q     E+  LF +M A G+ P 
Sbjct: 411 MI---IALGQ-----------------------HGLGQ-----ESIELFEKMLALGIKPD 439

Query: 332 NATFSVLFGAAGATANIDLGRQIHCVLMKTES-ESDLILENCLISMYAKCGVIDNAYNIF 390
           + T+  +  A      ++ GR    ++      E  L    C+I ++ + G++  A++  
Sbjct: 440 HITYVGVLSACTHVGLVEQGRGYFNLMTSIHKIEPTLSHYACMIDLFGRAGLLQEAFSFI 499

Query: 391 SNM-VSRDLVSWNSMV 405
            NM +  D+++W S++
Sbjct: 500 ENMPIEPDVIAWGSLL 515



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 91/318 (28%), Positives = 155/318 (48%), Gaps = 44/318 (13%)

Query: 261 VPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLF 320
           +PV+   SW +++ GY  +G ++ A+ +F  +PDRD+V+WT MI G  Q   F  A  +F
Sbjct: 1   MPVKTTFSWNTILTGYAKLGTLAKAHSVFDEIPDRDSVSWTTMIVGYNQMGRFESAIKMF 60

Query: 321 MEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKC 380
           + M    V P   T + +F +  A   +D+G++IH  ++K      + + N L++MYAK 
Sbjct: 61  VAMMKDKVLPTQFTVTNVFASCAALGALDIGKKIHSFVIKLGLSGCVPVANSLLNMYAKA 120

Query: 381 G-------VID-------NAYNI-----------------FSNMVSRDLVSWNSMVMGFS 409
           G       V D       +++NI                 F  M  RD+V+WNSM+ G+S
Sbjct: 121 GDSVMAKIVFDRMRLRSISSWNIMISLHMHGGRADLALAQFEQMSERDVVTWNSMITGYS 180

Query: 410 HHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAM----FDVYKI 465
            HG   E L++F  MLE    P+  T   ILSAC++   ++ G ++ + +    FD+  +
Sbjct: 181 QHGFDKEALELFSRMLEDSLKPDRFTLASILSACANIENLNLGKQIHSYIIRTEFDISGV 240

Query: 466 QPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRI-WGALLGACGFCE-GNAEIAEH 523
                   ++I++  + G ++ A+  V +      + I + ALL   G+ + GN   A H
Sbjct: 241 VQN-----ALISMYAKTGGVEIAQSIVEQSGISDLNVIAFTALLD--GYVKLGNITPARH 293

Query: 524 AAKRLLELDPLNAPAHVV 541
               L + D +   A +V
Sbjct: 294 IFDSLKDSDVVAWTAMIV 311



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 93/361 (25%), Positives = 166/361 (45%), Gaps = 64/361 (17%)

Query: 1   MSERNHPKSLVVHLTSSITKYSKRGFIDEAKALFQLM------PQR-------------- 40
           MSER+     VV   S IT YS+ GF  EA  LF  M      P R              
Sbjct: 164 MSERD-----VVTWNSMITGYSQHGFDKEALELFSRMLEDSLKPDRFTLASILSACANIE 218

Query: 41  ------NVVSY-------------NAMLSGFLQNGRLSEARRLFEE--MPERNVVSWTAM 79
                  + SY             NA++S + + G +  A+ + E+  + + NV+++TA+
Sbjct: 219 NLNLGKQIHSYIIRTEFDISGVVQNALISMYAKTGGVEIAQSIVEQSGISDLNVIAFTAL 278

Query: 80  ICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSM----PIKNV 135
           + G    G +  AR +F+ + + +VV+W +M+VG ++NG  ++A ++F  M    P  N 
Sbjct: 279 LDGYVKLGNITPARHIFDSLKDSDVVAWTAMIVGYVQNGLNDDAMELFRIMAKEGPRPNS 338

Query: 136 ISWNAM--IAGYVECCMMGEAI--VLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRR 191
            +  AM  ++  V     G+ I        E  +V    ++I+ Y +AG + +   +F  
Sbjct: 339 FTLAAMLSVSSNVASLNHGKQIHASAIRSGENLSVSVGNALITMYAKAGSITDAQQVFNL 398

Query: 192 MPR-KNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGR 250
           + R K+ VSWT+MI     +G  +ES+ LF +M  +   G   +  +   +++     G 
Sbjct: 399 IQRNKDTVSWTSMIIALGQHGLGQESIELFEKMLAL---GIKPDHITYVGVLSACTHVGL 455

Query: 251 LEEAQNLFDTVPVRDEIS-----WTSMIDGYLSVGQVSNAYYLFHNMP-DRDAVAWTAMI 304
           +E+ +  F+ +    +I      +  MID +   G +  A+    NMP + D +AW +++
Sbjct: 456 VEQGRGYFNLMTSIHKIEPTLSHYACMIDLFGRAGLLQEAFSFIENMPIEPDVIAWGSLL 515

Query: 305 S 305
           S
Sbjct: 516 S 516


>gi|49333391|gb|AAT64030.1| putative pentatricopeptide repeat protein [Gossypium hirsutum]
          Length = 805

 Score =  307 bits (787), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 173/584 (29%), Positives = 307/584 (52%), Gaps = 48/584 (8%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWT 77
           ++ Y+  G + E + +F  M ++NV  +N M+S + + G   E+  LF+ M E+ +    
Sbjct: 141 VSFYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGI---- 196

Query: 78  AMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNV-I 136
                  +  R   A +LF+++ +R+V+SWNSM+ G + NG       ++  M    + +
Sbjct: 197 -------EGKRPESASELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDV 249

Query: 137 SWNAMIAGYVECC-----MMGEAI--VLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLF 189
               +I+  V C       +G+A+  +  +   ER +    +++  Y + G+++    +F
Sbjct: 250 DLATIISVLVGCANSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVF 309

Query: 190 RRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFG 249
            +M  +NVVSWT+MI G+  +G+   +++L  +M+     G   +V +  S+++   R G
Sbjct: 310 EKMGERNVVSWTSMIAGYTRDGWSDGAIILLQQME---KEGVKLDVVAITSILHACARSG 366

Query: 250 RLEEAQNLFDTVPVRDEIS----WTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMIS 305
            L+  +++ D +   +  S      +++D Y   G +  A  +F  M  +D ++W  M+ 
Sbjct: 367 SLDNGKDVHDYIKANNMASNLFVCNALMDMYAKCGSMEGANSVFSTMVVKDIISWNTMVG 426

Query: 306 GLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESES 365
            L                      P + T + +  A  + + ++ G++IH  +++    S
Sbjct: 427 EL---------------------KPDSRTMACILPACASLSALERGKEIHGYILRNGYSS 465

Query: 366 DLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESML 425
           D  + N L+ +Y KCGV+  A  +F  + S+DLVSW  M+ G+  HG  NE +  F  M 
Sbjct: 466 DRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMIAGYGMHGYGNEAIATFNEMR 525

Query: 426 ESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKI 485
           ++G  P+ V+F+ IL ACSH+GL+ +GW  F  M + + I+P  EHY  M++LL R G +
Sbjct: 526 DAGIEPDEVSFISILYACSHSGLLEQGWRFFYIMKNDFNIEPKLEHYACMVDLLSRTGNL 585

Query: 486 KEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNI 545
            +A +F+  LP  PD  IWGALL  C     + E+AE  A+R+ EL+P N   +V+L NI
Sbjct: 586 SKAYKFIETLPIAPDATIWGALLCGCRIYH-DIELAEKVAERVFELEPENTGYYVLLANI 644

Query: 546 YAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGD 589
           YA + +  E  ++R  +G KG+RK PGCSW+   G + +F+SG+
Sbjct: 645 YAEAEKREEVKRMREKIGKKGLRKNPGCSWIEIKGRVNLFVSGN 688



 Score =  135 bits (339), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 111/447 (24%), Positives = 190/447 (42%), Gaps = 85/447 (19%)

Query: 39  QRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEE 98
              V  YNA +  F Q G L  A  L                        VC  +K   E
Sbjct: 63  DHQVTDYNAKILHFCQLGDLENAMEL------------------------VCMCQK--SE 96

Query: 99  MPERNVVSWNSMVVGLIRNGELNEARKVF-----NSMPIKNVISWNAMIAGYVECCMMGE 153
           +  +   S   +  GL     L + +KV      NS+ +   +    +++ Y  C  + E
Sbjct: 97  LETKTYGSVLQLCAGL---KSLTDGKKVHSIIKSNSVGVDEALGLK-LVSFYATCGDLKE 152

Query: 154 AIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRK------------------ 195
              +F+ ME++NV  W  M+S Y + G+ +E  CLF+ M  K                  
Sbjct: 153 GRRVFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGKRPESASELFDKLC 212

Query: 196 --NVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMI-----NGYIRF 248
             +V+SW +MI G+  NG  +  L ++ +M  +   G + ++ +  S++     +G +  
Sbjct: 213 DRDVISWNSMISGYVSNGLTERGLGIYKQMMYL---GIDVDLATIISVLVGCANSGTLSL 269

Query: 249 GRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLV 308
           G+   +  +  +   R   S T ++D Y   G +  A  +F  M +R+ V+WT+MI+G  
Sbjct: 270 GKAVHSLAIKSSFERRINFSNT-LLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYT 328

Query: 309 QNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLI 368
           ++     A  L  +M   GV       + +  A   + ++D G+ +H  +      S+L 
Sbjct: 329 RDGWSDGAIILLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKANNMASNLF 388

Query: 369 LENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESG 428
           + N L+ MYAKCG ++ A ++FS MV +D++SWN+MV                       
Sbjct: 389 VCNALMDMYAKCGSMEGANSVFSTMVVKDIISWNTMV---------------------GE 427

Query: 429 THPNSVTFLGILSACSHAGLVSRGWEL 455
             P+S T   IL AC+    + RG E+
Sbjct: 428 LKPDSRTMACILPACASLSALERGKEI 454


>gi|449507535|ref|XP_004163058.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g30700-like [Cucumis sativus]
          Length = 788

 Score =  307 bits (787), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 199/647 (30%), Positives = 319/647 (49%), Gaps = 75/647 (11%)

Query: 16  SSITKYSKRGF----IDEAKALFQLMPQRNVVSYNAMLSGFLQNG--------------- 56
           SSITK + + F    +   + LF  + + ++  +N ++ GF  NG               
Sbjct: 47  SSITKLTHKFFDLGAVAHVRQLFNKVSKPDLFLFNVLIRGFSDNGLPKSSIFLYTHLRKX 106

Query: 57  ------------RLSEARRLFEEMP-------------ERNVVSWTAMICGLADAGRVCE 91
                        +S A RL +E                 N+   +A++       R   
Sbjct: 107 TNLRPDNFTYAFAISAASRLEDERVGVLLHAHSIVDGVASNLFVGSAIVDLYFKFTRAEL 166

Query: 92  ARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVF----------NSMPIKNVISWNAM 141
           ARK+F+ MPER+ V WN+M+ G  RN    ++ +VF          +S  +  V++  A 
Sbjct: 167 ARKVFDVMPERDTVLWNTMISGFSRNSYFEDSIRVFVDMLDVGLSFDSTTLATVLTAVAE 226

Query: 142 IAGY-----VECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKN 196
           +  Y     ++C    + +         +V   T +IS Y + G+  +G  LF ++ + +
Sbjct: 227 LQEYRLGMGIQCLASKKGL-------HSDVYVLTGLISLYSKCGKSCKGRILFDQIDQPD 279

Query: 197 VVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEA-- 254
           ++S+ AMI G+ +N   + ++ LF E+     +G   N  +   +I  Y+ F  L+ +  
Sbjct: 280 LISYNAMISGYTFNHETESAVTLFRELLA---SGQRVNSSTLVGLIPVYLPFNHLQLSRL 336

Query: 255 -QNLFDTVPVRDEISW-TSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNEL 312
            QNL   + +  + S  T++   Y  + +V  A  LF   P++   +W AMISG  QN L
Sbjct: 337 IQNLSLKIGIILQPSVSTALTTVYCRLNEVQFARQLFDESPEKSLASWNAMISGYTQNGL 396

Query: 313 FVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENC 372
              A  LF EM    + P   T + +  A      + +G+ +H ++     ES++ +   
Sbjct: 397 TDRAISLFQEMMPQ-LSPNPVTVTSILSACAQLGALSIGKWVHGLIKSERLESNVYVSTA 455

Query: 373 LISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPN 432
           L+ MYAKCG I  A  +F  MV +++V+WN+M+ G+  HG   E LK+F  ML+SG  P 
Sbjct: 456 LVDMYAKCGSIVEARQLFDLMVDKNVVTWNAMITGYGLHGHGKEALKLFYEMLQSGIPPT 515

Query: 433 SVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFV 492
            VTFL IL ACSH+GLVS G E+F++M + Y  QP  EHY  M+++LGRAG++  A EF+
Sbjct: 516 GVTFLSILYACSHSGLVSEGNEIFHSMANNYGFQPMSEHYACMVDILGRAGQLTNALEFI 575

Query: 493 LRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRH 552
            R+P EP   +WGALLGAC     N E+A  A+KRL +LDP N   +V+L NIY+     
Sbjct: 576 ERMPLEPGPAVWGALLGAC-MIHKNTEMANVASKRLFQLDPENVGYYVLLSNIYSTDRNF 634

Query: 553 VEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEIL 599
            +   +R  +  + + K PGC+ +  +    +F SGD+   Q   I 
Sbjct: 635 PKAASVRQVVKKRKLAKTPGCTLIEIDDQQYVFTSGDRSHPQATAIF 681



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 94/353 (26%), Positives = 148/353 (41%), Gaps = 75/353 (21%)

Query: 14  LTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNV 73
           LT  I+ YSK G   + + LF  + Q +++SYNAM+SG+  N     A  LF E+     
Sbjct: 252 LTGLISLYSKCGKSCKGRILFDQIDQPDLISYNAMISGYTFNHETESAVTLFRELLASGQ 311

Query: 74  VSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLI--------------RNGE 119
              ++ + GL            F  +    ++   S+ +G+I              R  E
Sbjct: 312 RVNSSTLVGL------IPVYLPFNHLQLSRLIQNLSLKIGIILQPSVSTALTTVYCRLNE 365

Query: 120 LNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEME----------------- 162
           +  AR++F+  P K++ SWNAMI+GY +  +   AI LF+EM                  
Sbjct: 366 VQFARQLFDESPEKSLASWNAMISGYTQNGLTDRAISLFQEMMPQLSPNPVTVTSILSAC 425

Query: 163 ---------------------ERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWT 201
                                E NV   T+++  Y + G + E   LF  M  KNVV+W 
Sbjct: 426 AQLGALSIGKWVHGLIKSERLESNVYVSTALVDMYAKCGSIVEARQLFDLMVDKNVVTWN 485

Query: 202 AMIGGFAWNGFHKESLLLFIEM--KGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFD 259
           AMI G+  +G  KE+L LF EM   GI   G      +  S++      G + E   +F 
Sbjct: 486 AMITGYGLHGHGKEALKLFYEMLQSGIPPTG-----VTFLSILYACSHSGLVSEGNEIFH 540

Query: 260 TV-------PVRDEISWTSMIDGYLSVGQVSNAYYLFHNMP-DRDAVAWTAMI 304
           ++       P+ +   +  M+D     GQ++NA      MP +     W A++
Sbjct: 541 SMANNYGFQPMSEH--YACMVDILGRAGQLTNALEFIERMPLEPGPAVWGALL 591



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 62/240 (25%), Positives = 97/240 (40%), Gaps = 48/240 (20%)

Query: 15  TSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEM------ 68
           T+  T Y +   +  A+ LF   P++++ S+NAM+SG+ QNG    A  LF+EM      
Sbjct: 354 TALTTVYCRLNEVQFARQLFDESPEKSLASWNAMISGYTQNGLTDRAISLFQEMMPQLSP 413

Query: 69  -P-------------------------------ERNVVSWTAMICGLADAGRVCEARKLF 96
            P                               E NV   TA++   A  G + EAR+LF
Sbjct: 414 NPVTVTSILSACAQLGALSIGKWVHGLIKSERLESNVYVSTALVDMYAKCGSIVEARQLF 473

Query: 97  EEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECC----MMG 152
           + M ++NVV+WN+M+ G   +G   EA K+F  M    +          +  C    ++ 
Sbjct: 474 DLMVDKNVVTWNAMITGYGLHGHGKEALKLFYEMLQSGIPPTGVTFLSILYACSHSGLVS 533

Query: 153 EAIVLFEEMEERNVVT-----WTSMISGYCRAGEVEEGYCLFRRMP-RKNVVSWTAMIGG 206
           E   +F  M            +  M+    RAG++        RMP       W A++G 
Sbjct: 534 EGNEIFHSMANNYGFQPMSEHYACMVDILGRAGQLTNALEFIERMPLEPGPAVWGALLGA 593



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 46/181 (25%), Positives = 86/181 (47%), Gaps = 1/181 (0%)

Query: 265 DEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMR 324
           D  S T +   +  +G V++   LF+ +   D   +  +I G   N L   + +L+  +R
Sbjct: 45  DLSSITKLTHKFFDLGAVAHVRQLFNKVSKPDLFLFNVLIRGFSDNGLPKSSIFLYTHLR 104

Query: 325 AH-GVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVI 383
               + P N T++    AA    +  +G  +H   +     S+L + + ++ +Y K    
Sbjct: 105 KXTNLRPDNFTYAFAISAASRLEDERVGVLLHAHSIVDGVASNLFVGSAIVDLYFKFTRA 164

Query: 384 DNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSAC 443
           + A  +F  M  RD V WN+M+ GFS +    ++++VF  ML+ G   +S T   +L+A 
Sbjct: 165 ELARKVFDVMPERDTVLWNTMISGFSRNSYFEDSIRVFVDMLDVGLSFDSTTLATVLTAV 224

Query: 444 S 444
           +
Sbjct: 225 A 225


>gi|188509949|gb|ACD56635.1| putative pentatricopeptide repeat protein [Gossypium raimondii]
          Length = 667

 Score =  307 bits (787), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 173/584 (29%), Positives = 307/584 (52%), Gaps = 48/584 (8%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWT 77
           ++ Y+  G + E + +F  M ++NV  +N M+S + + G   E+  LF+ M E+ +    
Sbjct: 3   VSFYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGI---- 58

Query: 78  AMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNV-I 136
                  +  R   A +LF+++ +R+V+SWNSM+ G + NG       ++  M    + +
Sbjct: 59  -------EGKRSESASELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDV 111

Query: 137 SWNAMIAGYVECCM-----MGEAI--VLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLF 189
               +I+  V C       +G+A+  +  +   ER +    +++  Y + G+++    +F
Sbjct: 112 DLATIISVLVGCAKSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVF 171

Query: 190 RRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFG 249
            +M  +NVVSWT+MI G+  +G+   +++L  +M+     G   +V +  S+++   R G
Sbjct: 172 EKMGERNVVSWTSMIAGYTRDGWSDGAIILLQQME---KEGVKLDVVAITSILHACARSG 228

Query: 250 RLEEAQNLFDTVPVRDEIS----WTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMIS 305
            L+  +++ D +   +  S      +++D Y   G +  A  +F  M  +D ++W  M+ 
Sbjct: 229 SLDNGKDVHDYIKANNMASNLFVCNALMDMYAKCGSMEGANSVFSTMVVKDIISWNTMVG 288

Query: 306 GLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESES 365
            L                      P + T + +  A  + + ++ G++IH  +++    S
Sbjct: 289 EL---------------------KPDSRTMACILPACASLSALERGKEIHGYILRNGYSS 327

Query: 366 DLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESML 425
           D  + N L+ +Y KCGV+  A  +F  + S+DLVSW  M+ G+  HG  NE +  F  M 
Sbjct: 328 DRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMIAGYGMHGYGNEAIATFNEMR 387

Query: 426 ESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKI 485
           ++G  P+ V+F+ IL ACSH+GL+ +GW  F  M + + I+P  EHY  M++LL R G +
Sbjct: 388 DAGIEPDEVSFISILYACSHSGLLEQGWRFFYIMKNDFNIEPKLEHYACMVDLLSRTGNL 447

Query: 486 KEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNI 545
            +A +F+  LP  PD  IWGALL  C     + E+AE  A+R+ EL+P N   +V+L NI
Sbjct: 448 SKAYKFIETLPIAPDATIWGALLCGCRIYH-DIELAEKVAERVFELEPENTGYYVLLANI 506

Query: 546 YAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGD 589
           YA + +  E  ++R  +G KG+RK PGCSW+   G + +F+SG+
Sbjct: 507 YAEAEKWEEVKRMREKIGKKGLRKNPGCSWIEIKGRVNLFVSGN 550



 Score =  135 bits (340), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 89/339 (26%), Positives = 159/339 (46%), Gaps = 48/339 (14%)

Query: 141 MIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRK----- 195
           +++ Y  C  + E   +F+ ME++NV  W  M+S Y + G+ +E  CLF+ M  K     
Sbjct: 2   LVSFYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGK 61

Query: 196 ---------------NVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNS 240
                          +V+SW +MI G+  NG  +  L ++ +M  +   G + ++ +  S
Sbjct: 62  RSESASELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYL---GIDVDLATIIS 118

Query: 241 MINGYIRFGRL---EEAQNLFDTVPVRDEISWT-SMIDGYLSVGQVSNAYYLFHNMPDRD 296
           ++ G  + G L   +   +L         I+++ +++D Y   G +  A  +F  M +R+
Sbjct: 119 VLVGCAKSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERN 178

Query: 297 AVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHC 356
            V+WT+MI+G  ++     A  L  +M   GV       + +  A   + ++D G+ +H 
Sbjct: 179 VVSWTSMIAGYTRDGWSDGAIILLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHD 238

Query: 357 VLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANE 416
            +      S+L + N L+ MYAKCG ++ A ++FS MV +D++SWN+MV           
Sbjct: 239 YIKANNMASNLFVCNALMDMYAKCGSMEGANSVFSTMVVKDIISWNTMV----------- 287

Query: 417 TLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWEL 455
                         P+S T   IL AC+    + RG E+
Sbjct: 288 ----------GELKPDSRTMACILPACASLSALERGKEI 316



 Score =  131 bits (330), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 109/472 (23%), Positives = 201/472 (42%), Gaps = 113/472 (23%)

Query: 48  MLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCE---------------- 91
           ++S +   G L E RR+F+ M ++NV  W  M+   A  G   E                
Sbjct: 2   LVSFYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGK 61

Query: 92  ----ARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNV-ISWNAMIAGYV 146
               A +LF+++ +R+V+SWNSM+ G + NG       ++  M    + +    +I+  V
Sbjct: 62  RSESASELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLV 121

Query: 147 ECCM-----MGEAI--VLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVS 199
            C       +G+A+  +  +   ER +    +++  Y + G+++    +F +M  +NVVS
Sbjct: 122 GCAKSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVS 181

Query: 200 WTAMIGGFAWNGFHKESLLLFIEMK---------------------GICDNGNNC----- 233
           WT+MI G+  +G+   +++L  +M+                     G  DNG +      
Sbjct: 182 WTSMIAGYTRDGWSDGAIILLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIK 241

Query: 234 ------NVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMI-------------- 273
                 N+  CN++++ Y + G +E A ++F T+ V+D ISW +M+              
Sbjct: 242 ANNMASNLFVCNALMDMYAKCGSMEGANSVFSTMVVKDIISWNTMVGELKPDSRTMACIL 301

Query: 274 ---------------------DGYLSVGQVSNAY--------------YLFHNMPDRDAV 298
                                +GY S   V+NA                LF  +P +D V
Sbjct: 302 PACASLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDLV 361

Query: 299 AWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVL 358
           +WT MI+G   +    EA   F EMR  G+ P   +F  +  A   +  ++ G +    +
Sbjct: 362 SWTVMIAGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRFF-YI 420

Query: 359 MKTESESDLILEN--CLISMYAKCGVIDNAYNIFSNM-VSRDLVSWNSMVMG 407
           MK +   +  LE+  C++ + ++ G +  AY     + ++ D   W +++ G
Sbjct: 421 MKNDFNIEPKLEHYACMVDLLSRTGNLSKAYKFIETLPIAPDATIWGALLCG 472


>gi|302789674|ref|XP_002976605.1| hypothetical protein SELMODRAFT_105472 [Selaginella moellendorffii]
 gi|300155643|gb|EFJ22274.1| hypothetical protein SELMODRAFT_105472 [Selaginella moellendorffii]
          Length = 614

 Score =  307 bits (786), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 179/537 (33%), Positives = 293/537 (54%), Gaps = 10/537 (1%)

Query: 17  SITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSW 76
           +I   ++ G   +A++LF   P+R+V+++N+ML+   Q  R+ EA  +F  MP R+VVS 
Sbjct: 78  TIAALAQNGCFRDARSLFVESPRRDVITWNSMLTIAAQRLRIGEAWEVFARMPARSVVSA 137

Query: 77  TAMICGLADAGRVCEARKLFEE-MPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNV 135
            AMI   A  G++ EA+  F + M ER+V SWN+++   + +GE++ AR VF++MP  + 
Sbjct: 138 NAMIAAFAQCGQIREAQGFFRDAMAERDVSSWNNLLHACVSSGEVDLARSVFDAMPHWDC 197

Query: 136 ISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRK 195
           ++W++MI GY E  MM +A  LF  ++  ++++ TSMI+GY   G++++   LF RM  +
Sbjct: 198 VAWSSMIQGYAERRMMRDAEELFLALDHPDLMSITSMIAGYGSVGKIDQARELFSRMKHR 257

Query: 196 NVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQ 255
           + V+W AMI   A NG  +E+   F  M          N+ S N+MI+ Y + G ++ A+
Sbjct: 258 DTVAWNAMIQALAENGRIEEARQAFDSMTA------PRNLSSWNTMISAYAQAGLVDRAR 311

Query: 256 NLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVE 315
            LFD    ++ ++WT+M+  +   GQ+  A  +   MP+ + V+WT MI+   Q+    +
Sbjct: 312 ELFDQTLDKNVVTWTAMMHAHGQAGQLREARSILDAMPEPNIVSWTTMITAYAQHGASAD 371

Query: 316 ATYLFMEMRAHGVPPLNATF-SVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLI 374
           A  LF  M   G  P   T  SVLF AA A  +  L   I   +  +    +  + N L+
Sbjct: 372 AIQLFRIMDLEGFQPTRVTIVSVLF-AATAIQDPSLAHHILPDIRHSGLYREGAVGNSLV 430

Query: 375 SMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSV 434
            ++ + G +D+A  IF  M+ R  VSWN  +   +  G     L++ ESM   G  P+++
Sbjct: 431 HLFGRSGRLDDAREIFQGMIDRSTVSWNIAITATAKAGHGRSALQLLESMALDGCAPDAI 490

Query: 435 TFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLR 494
           TF  +L A SH G +    E F +M   ++++   EH+V+MI+LL RAG+   AEE +  
Sbjct: 491 TFSCVLFAWSHIGSLELAGECFRSMQQDFEVEALVEHFVAMIDLLARAGRADSAEELLHS 550

Query: 495 LPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGR 551
           +P+EPD      L  A G   G    A   A  ++E+ P    A+V+L ++    GR
Sbjct: 551 MPYEPDDVALTTLAVARG-SGGEVGGAASGAMAVMEMSPERPTAYVLLSSLSKQGGR 606



 Score =  166 bits (419), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 136/522 (26%), Positives = 230/522 (44%), Gaps = 87/522 (16%)

Query: 7   PKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSE------ 60
           P+  V+   S +T  ++R  I EA  +F  MP R+VVS NAM++ F Q G++ E      
Sbjct: 99  PRRDVITWNSMLTIAAQRLRIGEAWEVFARMPARSVVSANAMIAAFAQCGQIREAQGFFR 158

Query: 61  --------------------------ARRLFEEMPERNVVSWTAMICGLAD--------- 85
                                     AR +F+ MP  + V+W++MI G A+         
Sbjct: 159 DAMAERDVSSWNNLLHACVSSGEVDLARSVFDAMPHWDCVAWSSMIQGYAERRMMRDAEE 218

Query: 86  ----------------------AGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEA 123
                                  G++ +AR+LF  M  R+ V+WN+M+  L  NG + EA
Sbjct: 219 LFLALDHPDLMSITSMIAGYGSVGKIDQARELFSRMKHRDTVAWNAMIQALAENGRIEEA 278

Query: 124 RKVFNSMPI-KNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEV 182
           R+ F+SM   +N+ SWN MI+ Y +  ++  A  LF++  ++NVVTWT+M+  + +AG++
Sbjct: 279 RQAFDSMTAPRNLSSWNTMISAYAQAGLVDRARELFDQTLDKNVVTWTAMMHAHGQAGQL 338

Query: 183 EEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMI 242
            E   +   MP  N+VSWT MI  +A +G   +++ LF  M      G      +  S++
Sbjct: 339 REARSILDAMPEPNIVSWTTMITAYAQHGASADAIQLFRIMDL---EGFQPTRVTIVSVL 395

Query: 243 NGYIRFGRLEEAQNLFDTVP----VRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAV 298
                      A ++   +      R+     S++  +   G++ +A  +F  M DR  V
Sbjct: 396 FAATAIQDPSLAHHILPDIRHSGLYREGAVGNSLVHLFGRSGRLDDAREIFQGMIDRSTV 455

Query: 299 AWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVL 358
           +W   I+   +      A  L   M   G  P   TFS +  A     +++L  +  C  
Sbjct: 456 SWNIAITATAKAGHGRSALQLLESMALDGCAPDAITFSCVLFAWSHIGSLELAGE--CFR 513

Query: 359 -MKTESESDLILEN--CLISMYAKCGVIDNAYNIFSNM-VSRDLVSWNSMVM----GFSH 410
            M+ + E + ++E+   +I + A+ G  D+A  +  +M    D V+  ++ +    G   
Sbjct: 514 SMQQDFEVEALVEHFVAMIDLLARAGRADSAEELLHSMPYEPDDVALTTLAVARGSGGEV 573

Query: 411 HGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRG 452
            G A+  + V E        P   T   +LS+ S  G   RG
Sbjct: 574 GGAASGAMAVME------MSPERPTAYVLLSSLSKQGGRERG 609



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 100/345 (28%), Positives = 160/345 (46%), Gaps = 51/345 (14%)

Query: 5   NHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRL 64
           +HP   ++ +TS I  Y   G ID+A+ LF  M  R+ V++NAM+    +NGR+ EAR+ 
Sbjct: 224 DHPD--LMSITSMIAGYGSVGKIDQARELFSRMKHRDTVAWNAMIQALAENGRIEEARQA 281

Query: 65  FEEMPE-RNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEA 123
           F+ M   RN+ SW  MI   A AG V  AR+LF++  ++NVV+W +M+    + G+L EA
Sbjct: 282 FDSMTAPRNLSSWNTMISAYAQAGLVDRARELFDQTLDKNVVTWTAMMHAHGQAGQLREA 341

Query: 124 RKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEME--------------------- 162
           R + ++MP  N++SW  MI  Y +     +AI LF  M+                     
Sbjct: 342 RSILDAMPEPNIVSWTTMITAYAQHGASADAIQLFRIMDLEGFQPTRVTIVSVLFAATAI 401

Query: 163 ------------------ERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMI 204
                              R      S++  + R+G +++   +F+ M  ++ VSW   I
Sbjct: 402 QDPSLAHHILPDIRHSGLYREGAVGNSLVHLFGRSGRLDDAREIFQGMIDRSTVSWNIAI 461

Query: 205 GGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVR 264
              A  G H  S L  +E   +     +    SC  ++  +   G LE A   F ++   
Sbjct: 462 TATAKAG-HGRSALQLLESMALDGCAPDAITFSC--VLFAWSHIGSLELAGECFRSMQQD 518

Query: 265 DEIS-----WTSMIDGYLSVGQVSNAYYLFHNMP-DRDAVAWTAM 303
            E+      + +MID     G+  +A  L H+MP + D VA T +
Sbjct: 519 FEVEALVEHFVAMIDLLARAGRADSAEELLHSMPYEPDDVALTTL 563



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 107/414 (25%), Positives = 186/414 (44%), Gaps = 60/414 (14%)

Query: 139 NAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVV 198
           N +I  Y  C  +  A+ +F E+  RN+ T    I+   + G   +   LF   PR++V+
Sbjct: 45  NLLIQMYGACRSIASAMAVFRELRVRNLFTINITIAALAQNGCFRDARSLFVESPRRDVI 104

Query: 199 SWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLF 258
           +W +M+   A      E+  +F  M          +V S N+MI  + + G++ EAQ  F
Sbjct: 105 TWNSMLTIAAQRLRIGEAWEVFARMPA-------RSVVSANAMIAAFAQCGQIREAQGFF 157

Query: 259 -DTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEAT 317
            D +  RD  SW +++   +S G+V  A  +F  MP  D VAW++MI G  +  +  +A 
Sbjct: 158 RDAMAERDVSSWNNLLHACVSSGEVDLARSVFDAMPHWDCVAWSSMIQGYAERRMMRDAE 217

Query: 318 YLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMY 377
            LF+ +                                          DL+    +I+ Y
Sbjct: 218 ELFLAL---------------------------------------DHPDLMSITSMIAGY 238

Query: 378 AKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHP-NSVTF 436
              G ID A  +FS M  RD V+WN+M+   + +G   E  + F+SM    T P N  ++
Sbjct: 239 GSVGKIDQARELFSRMKHRDTVAWNAMIQALAENGRIEEARQAFDSM----TAPRNLSSW 294

Query: 437 LGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLP 496
             ++SA + AGLV R  ELF+   D   +      + +M++  G+AG+++EA   +  +P
Sbjct: 295 NTMISAYAQAGLVDRARELFDQTLDKNVVT-----WTAMMHAHGQAGQLREARSILDAMP 349

Query: 497 FEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASG 550
            EP+   W  ++ A  + +  A        R+++L+        ++  ++AA+ 
Sbjct: 350 -EPNIVSWTTMITA--YAQHGASADAIQLFRIMDLEGFQPTRVTIVSVLFAATA 400



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 47/186 (25%), Positives = 84/186 (45%), Gaps = 17/186 (9%)

Query: 330 PLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNI 389
           P  + + VL     A  +++ GR++H  ++++   +DL + N LI MY  C  I +A  +
Sbjct: 4   PGASGYVVLLRRCIAGRDLEGGRRLHAQIIRSGWHTDLFVANLLIQMYGACRSIASAMAV 63

Query: 390 FSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLV 449
           F  +  R+L + N  +   + +G   +   +F   +ES    + +T+  +L+  +    +
Sbjct: 64  FRELRVRNLFTINITIAALAQNGCFRDARSLF---VES-PRRDVITWNSMLTIAAQRLRI 119

Query: 450 SRGWELFNAMFDVYKIQPGPEHYV----SMINLLGRAGKIKEAEEFVLRLPFEPDHRIWG 505
              WE+F  M         P   V    +MI    + G+I+EA+ F      E D   W 
Sbjct: 120 GEAWEVFARM---------PARSVVSANAMIAAFAQCGQIREAQGFFRDAMAERDVSSWN 170

Query: 506 ALLGAC 511
            LL AC
Sbjct: 171 NLLHAC 176


>gi|326532272|dbj|BAK05065.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 889

 Score =  307 bits (786), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 187/589 (31%), Positives = 300/589 (50%), Gaps = 44/589 (7%)

Query: 52  FLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMV 111
           F++ G +  A + F ++    V    +M+ G A +  V  A +LFE MPER+VVSWN MV
Sbjct: 207 FVRCGAVDFASKQFSQIERPTVFCRNSMLAGYAKSYGVDHALELFESMPERDVVSWNMMV 266

Query: 112 VGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTW-- 169
             L ++G   EA  V   M  + V   +      +  C    ++   +++  + + +   
Sbjct: 267 SALSQSGRAREALSVAVDMHNRGVRLDSTTYTSSLTACAKLSSLGWGKQLHAQVIRSLPC 326

Query: 170 ------TSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEM 223
                 ++M+  Y + G  +E   +F  +  +N VSWT +IGGF   G   ESL LF +M
Sbjct: 327 IDPYVASAMVELYAKCGCFKEARRVFSSLRDRNTVSWTVLIGGFLQYGCFSESLELFNQM 386

Query: 224 KGI---------------CDN-----------------GNNCNVQSCNSMINGYIRFGRL 251
           +                 C N                 G+   V   NS+I+ Y + G L
Sbjct: 387 RAELMTVDQFALATIISGCSNRMDMCLARQLHSLSLKSGHTRAVVISNSLISMYAKCGNL 446

Query: 252 EEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNE 311
           + A+++F ++  RD +SWT M+  Y  VG +  A   F  M  R+ + W AM+   +Q+ 
Sbjct: 447 QNAESIFSSMEERDIVSWTGMLTAYSQVGNIGKAREFFDGMSTRNVITWNAMLGAYIQHG 506

Query: 312 LFVEATYLFMEMRAH-GVPPLNATFSVLF-GAAGATANIDLGRQIHCVLMKTESESDLIL 369
              +   ++  M     V P   T+  LF G A   AN  LG QI    +K     D  +
Sbjct: 507 AEEDGLKMYSAMLTEKDVIPDWVTYVTLFRGCADMGAN-KLGDQITGHTVKVGLILDTSV 565

Query: 370 ENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGT 429
            N +I+MY+KCG I  A  IF  +  +DLVSWN+M+ G+S HG+  + +++F+ ML+ G 
Sbjct: 566 MNAVITMYSKCGRISEARKIFDFLSRKDLVSWNAMITGYSQHGMGKQAIEIFDDMLKKGA 625

Query: 430 HPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAE 489
            P+ ++++ +LS+CSH+GLV  G   F+ +   + + PG EH+  M++LL RAG + EA+
Sbjct: 626 KPDYISYVAVLSSCSHSGLVQEGKFYFDMLKRDHNVSPGLEHFSCMVDLLARAGNLIEAK 685

Query: 490 EFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAAS 549
             +  +P +P   +WGALL AC    GN E+AE AAK L +LD  ++  +++L  IYA +
Sbjct: 686 NLIDEMPMKPTAEVWGALLSACK-THGNNELAELAAKHLFDLDSPDSGGYMLLAKIYADA 744

Query: 550 GRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
           G+ V+  ++R  M  KG++K PG SW+     + +F + D    QV  I
Sbjct: 745 GKSVDSAQVRKLMRDKGIKKNPGYSWMEVKNKVHVFKAEDVSHPQVIAI 793



 Score =  159 bits (402), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 126/518 (24%), Positives = 223/518 (43%), Gaps = 85/518 (16%)

Query: 21  YSKRGFIDEAKALFQ-LMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAM 79
           Y   G + +A+ L +  + + NV+++N M++G+ + G LS+A  LF  MP R+V SW  +
Sbjct: 73  YLSCGALPDARGLLRGDITEPNVITHNIMMNGYAKLGSLSDAEELFGRMPRRDVTSWNTL 132

Query: 80  ICGLADAGRVCEARKLFEEMPER-----------------NVVSWNSMVVGL-------- 114
           + G   +GR  +A + F  M                      + W+ + + L        
Sbjct: 133 MSGYYQSGRFLDAMESFVSMRRSGDSLPNAFTFGCAMKSCGALGWHEVALQLLGLLTKFG 192

Query: 115 ---------------IRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFE 159
                          +R G ++ A K F+ +    V   N+M+AGY +   +  A+ LFE
Sbjct: 193 FQGDPDVATGIVDMFVRCGAVDFASKQFSQIERPTVFCRNSMLAGYAKSYGVDHALELFE 252

Query: 160 EMEERNVVTWTSMISGYCRAGEVEEGYC----LFRRMPRKNVVSWTAMIGGFAWNGFHKE 215
            M ER+VV+W  M+S   ++G   E       +  R  R +  ++T+ +   A       
Sbjct: 253 SMPERDVVSWNMMVSALSQSGRAREALSVAVDMHNRGVRLDSTTYTSSLTACA----KLS 308

Query: 216 SLLLFIEMKGICDNGNNC-NVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMID 274
           SL    ++         C +    ++M+  Y + G  +EA+ +F ++  R+ +SWT +I 
Sbjct: 309 SLGWGKQLHAQVIRSLPCIDPYVASAMVELYAKCGCFKEARRVFSSLRDRNTVSWTVLIG 368

Query: 275 GYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNAT 334
           G+L  G                                F E+  LF +MRA  +      
Sbjct: 369 GFLQYG-------------------------------CFSESLELFNQMRAELMTVDQFA 397

Query: 335 FSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMV 394
            + +        ++ L RQ+H + +K+     +++ N LISMYAKCG + NA +IFS+M 
Sbjct: 398 LATIISGCSNRMDMCLARQLHSLSLKSGHTRAVVISNSLISMYAKCGNLQNAESIFSSME 457

Query: 395 SRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWE 454
            RD+VSW  M+  +S  G   +  + F+ M    +  N +T+  +L A    G    G +
Sbjct: 458 ERDIVSWTGMLTAYSQVGNIGKAREFFDGM----STRNVITWNAMLGAYIQHGAEEDGLK 513

Query: 455 LFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFV 492
           +++AM     + P    YV++       G  K  ++  
Sbjct: 514 MYSAMLTEKDVIPDWVTYVTLFRGCADMGANKLGDQIT 551



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 73/275 (26%), Positives = 143/275 (52%), Gaps = 16/275 (5%)

Query: 3   ERNHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEAR 62
           +  H +++V+   S I+ Y+K G +  A+++F  M +R++VS+  ML+ + Q G + +AR
Sbjct: 423 KSGHTRAVVIS-NSLISMYAKCGNLQNAESIFSSMEERDIVSWTGMLTAYSQVGNIGKAR 481

Query: 63  RLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEM-PERNVVSWNSMVVGLIRNGELN 121
             F+ M  RNV++W AM+      G   +  K++  M  E++V+      V L R     
Sbjct: 482 EFFDGMSTRNVITWNAMLGAYIQHGAEEDGLKMYSAMLTEKDVIPDWVTYVTLFRGCADM 541

Query: 122 EARKVFNSMP--------IKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMI 173
            A K+ + +         I +    NA+I  Y +C  + EA  +F+ +  +++V+W +MI
Sbjct: 542 GANKLGDQITGHTVKVGLILDTSVMNAVITMYSKCGRISEARKIFDFLSRKDLVSWNAMI 601

Query: 174 SGYCRAGEVEEGYCLFRRMPRK----NVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDN 229
           +GY + G  ++   +F  M +K    + +S+ A++   + +G  +E    F  +K   D+
Sbjct: 602 TGYSQHGMGKQAIEIFDDMLKKGAKPDYISYVAVLSSCSHSGLVQEGKFYFDMLKR--DH 659

Query: 230 GNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVR 264
             +  ++  + M++   R G L EA+NL D +P++
Sbjct: 660 NVSPGLEHFSCMVDLLARAGNLIEAKNLIDEMPMK 694



 Score = 47.0 bits (110), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 52/247 (21%), Positives = 97/247 (39%), Gaps = 39/247 (15%)

Query: 355 HCVLMKTESESDLILENCLISMYAKCGVIDNA---------------YNI---------- 389
           H  L+     S + L+N L+  Y  CG + +A               +NI          
Sbjct: 51  HGRLVSVGLASAVFLQNTLLHAYLSCGALPDARGLLRGDITEPNVITHNIMMNGYAKLGS 110

Query: 390 -------FSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESG-THPNSVTFLGILS 441
                  F  M  RD+ SWN+++ G+   G   + ++ F SM  SG + PN+ TF   + 
Sbjct: 111 LSDAEELFGRMPRRDVTSWNTLMSGYYQSGRFLDAMESFVSMRRSGDSLPNAFTFGCAMK 170

Query: 442 ACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDH 501
           +C   G      +L   +   +  Q  P+    ++++  R G +  A +   ++   P  
Sbjct: 171 SCGALGWHEVALQLL-GLLTKFGFQGDPDVATGIVDMFVRCGAVDFASKQFSQIE-RPTV 228

Query: 502 RIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMD 561
               ++L       G     +HA +    +   +  +  ++ +  + SGR  E   + +D
Sbjct: 229 FCRNSMLAGYAKSYG----VDHALELFESMPERDVVSWNMMVSALSQSGRAREALSVAVD 284

Query: 562 MGLKGVR 568
           M  +GVR
Sbjct: 285 MHNRGVR 291


>gi|359480463|ref|XP_003632466.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g37170-like, partial [Vitis vinifera]
          Length = 621

 Score =  307 bits (786), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 172/525 (32%), Positives = 289/525 (55%), Gaps = 13/525 (2%)

Query: 83  LADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVF----NSMPIKNVISW 138
           L +  R+ EA ++ + +   +  ++++++   ++   L+E  KV      S  +  V+  
Sbjct: 68  LCEQKRLREAIQILDHVDRPSAATYSTLLQLCLQLRALDEGMKVHAHTKTSGFVPGVVIS 127

Query: 139 NAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVV 198
           N ++  Y++C  +  A  LF+EM ER++ +W  MISGY +AG ++E   LF +M  ++  
Sbjct: 128 NRILDMYIKCNSLVNAKRLFDEMAERDLCSWNIMISGYAKAGRLQEARKLFDQMTERDNF 187

Query: 199 SWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLF 258
           SWTAM  G+  +  H+E+L LF  M+        CN  + +S +        L   + + 
Sbjct: 188 SWTAMTSGYVRHDQHEEALELFRAMQR--HENFKCNKFTMSSALAASAAIQSLHLGKEIH 245

Query: 259 DTVPVR-----DEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELF 313
             + +R     D + W+++ D Y   G +  A ++F    DRD V+WTAMI    +    
Sbjct: 246 GHI-LRIGLDLDGVVWSALSDMYGKCGSIGEARHIFDKTVDRDVVSWTAMIDRYFKEGRR 304

Query: 314 VEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCL 373
            E   LF ++   G+ P   TFS +  A    A  +LG+Q+H  + +   +      + L
Sbjct: 305 EEGFALFSDLLKSGIWPNEFTFSGVLNACADHAAEELGKQVHGYMTRIGFDPSSFAASTL 364

Query: 374 ISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNS 433
           + MY KCG I NA  +F+ M   DLVSW S++ G++ +G  +E L+ FE +L+SGT P+ 
Sbjct: 365 VHMYTKCGNIKNARRVFNGMPRPDLVSWTSLISGYAQNGQPDEALQFFELLLKSGTQPDH 424

Query: 434 VTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVL 493
           +TF+G+LSAC+HAGLV +G E F+++ + + +    +HY  +I+LL R+G+++EAE+ + 
Sbjct: 425 ITFVGVLSACTHAGLVDKGLEYFDSIKEKHGLTHTADHYACLIDLLSRSGRLQEAEDIID 484

Query: 494 RLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHV 553
           ++P EPD  +W +LLG C    GN ++A+ AA+ L E++P N   +  L NIYA +G   
Sbjct: 485 KMPIEPDKFLWASLLGGCRI-HGNLKLAKRAAEALFEIEPENPATYTTLANIYATAGLWG 543

Query: 554 EEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
              ++R  M  +GV K PG SW+     + +FL GD   A+  EI
Sbjct: 544 GVAEVRKVMDARGVVKKPGLSWIEIKREVHVFLVGDTSHAKSKEI 588



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 111/436 (25%), Positives = 194/436 (44%), Gaps = 54/436 (12%)

Query: 30  AKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRV 89
           AK LF  M +R++ S+N M+SG+ + GRL EAR+LF++M ER+  SWTAM  G     + 
Sbjct: 143 AKRLFDEMAERDLCSWNIMISGYAKAGRLQEARKLFDQMTERDNFSWTAMTSGYVRHDQH 202

Query: 90  CEARKLFEEMPERNVVSWNSMV----------VGLIRNGELNEARKVFNSMPIKNVISWN 139
            EA +LF  M        N             +  +  G+      +   + +  V+ W+
Sbjct: 203 EEALELFRAMQRHENFKCNKFTMSSALAASAAIQSLHLGKEIHGHILRIGLDLDGVV-WS 261

Query: 140 AMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRK---- 195
           A+   Y +C  +GEA  +F++  +R+VV+WT+MI  Y + G  EEG+ LF  + +     
Sbjct: 262 ALSDMYGKCGSIGEARHIFDKTVDRDVVSWTAMIDRYFKEGRREEGFALFSDLLKSGIWP 321

Query: 196 NVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQ 255
           N  +++ ++   A +   +    +   M  I   G + +  + +++++ Y + G ++ A+
Sbjct: 322 NEFTFSGVLNACADHAAEELGKQVHGYMTRI---GFDPSSFAASTLVHMYTKCGNIKNAR 378

Query: 256 NLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVE 315
            +F+ +P  D +SWTS+I GY   GQ           PD                    E
Sbjct: 379 RVFNGMPRPDLVSWTSLISGYAQNGQ-----------PD--------------------E 407

Query: 316 ATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILE-NCLI 374
           A   F  +   G  P + TF  +  A      +D G +    + +    +       CLI
Sbjct: 408 ALQFFELLLKSGTQPDHITFVGVLSACTHAGLVDKGLEYFDSIKEKHGLTHTADHYACLI 467

Query: 375 SMYAKCGVIDNAYNIFSNM-VSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHP-N 432
            + ++ G +  A +I   M +  D   W S++ G   HG      +  E++ E    P N
Sbjct: 468 DLLSRSGRLQEAEDIIDKMPIEPDKFLWASLLGGCRIHGNLKLAKRAAEALFE--IEPEN 525

Query: 433 SVTFLGILSACSHAGL 448
             T+  + +  + AGL
Sbjct: 526 PATYTTLANIYATAGL 541



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 76/342 (22%), Positives = 140/342 (40%), Gaps = 86/342 (25%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPER------ 71
           I+ Y+K G + EA+ LF  M +R+  S+ AM SG++++ +  EA  LF  M         
Sbjct: 162 ISGYAKAGRLQEARKLFDQMTERDNFSWTAMTSGYVRHDQHEEALELFRAMQRHENFKCN 221

Query: 72  ----------------------------------NVVSWTAMICGLADAGRVCEARKLFE 97
                                             + V W+A+       G + EAR +F+
Sbjct: 222 KFTMSSALAASAAIQSLHLGKEIHGHILRIGLDLDGVVWSALSDMYGKCGSIGEARHIFD 281

Query: 98  EMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVL 157
           +  +R+VVSW +M+    + G   E   +F+ +    +       +G +  C    A  L
Sbjct: 282 KTVDRDVVSWTAMIDRYFKEGRREEGFALFSDLLKSGIWPNEFTFSGVLNACADHAAEEL 341

Query: 158 FEEME--------ERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAW 209
            +++         + +    ++++  Y + G ++    +F  MPR ++VSWT++I G+A 
Sbjct: 342 GKQVHGYMTRIGFDPSSFAASTLVHMYTKCGNIKNARRVFNGMPRPDLVSWTSLISGYAQ 401

Query: 210 NGFHKESLLLF---------------------IEMKGICDNG--------------NNCN 234
           NG   E+L  F                         G+ D G              +  +
Sbjct: 402 NGQPDEALQFFELLLKSGTQPDHITFVGVLSACTHAGLVDKGLEYFDSIKEKHGLTHTAD 461

Query: 235 VQSCNSMINGYIRFGRLEEAQNLFDTVPVR-DEISWTSMIDG 275
             +C  +I+   R GRL+EA+++ D +P+  D+  W S++ G
Sbjct: 462 HYAC--LIDLLSRSGRLQEAEDIIDKMPIEPDKFLWASLLGG 501



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 51/189 (26%), Positives = 99/189 (52%), Gaps = 27/189 (14%)

Query: 9   SLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEM 68
           S +VH+      Y+K G I  A+ +F  MP+ ++VS+ +++SG+ QNG+  EA + FE +
Sbjct: 362 STLVHM------YTKCGNIKNARRVFNGMPRPDLVSWTSLISGYAQNGQPDEALQFFELL 415

Query: 69  ----PERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVS-----WNSMVVGLIRNGE 119
                + + +++  ++     AG V +  + F+ + E++ ++     +  ++  L R+G 
Sbjct: 416 LKSGTQPDHITFVGVLSACTHAGLVDKGLEYFDSIKEKHGLTHTADHYACLIDLLSRSGR 475

Query: 120 LNEARKVFNSMPIK-NVISWNAMIAGYVECCMMGE-------AIVLFEEMEERNVVTWTS 171
           L EA  + + MPI+ +   W +++ G   C + G        A  LF E+E  N  T+T+
Sbjct: 476 LQEAEDIIDKMPIEPDKFLWASLLGG---CRIHGNLKLAKRAAEALF-EIEPENPATYTT 531

Query: 172 MISGYCRAG 180
           + + Y  AG
Sbjct: 532 LANIYATAG 540



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 48/219 (21%), Positives = 99/219 (45%), Gaps = 18/219 (8%)

Query: 11  VVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMP- 69
           VV  T+ I +Y K G  +E  ALF  + +  +       SG L       A  L +++  
Sbjct: 288 VVSWTAMIDRYFKEGRREEGFALFSDLLKSGIWPNEFTFSGVLNACADHAAEELGKQVHG 347

Query: 70  -------ERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNE 122
                  + +  + + ++      G +  AR++F  MP  ++VSW S++ G  +NG+ +E
Sbjct: 348 YMTRIGFDPSSFAASTLVHMYTKCGNIKNARRVFNGMPRPDLVSWTSLISGYAQNGQPDE 407

Query: 123 ARKVFNSMPIKNVISWNAMIAGYVECC----MMGEAIVLFEEMEERNVVTWTS-----MI 173
           A + F  +        +    G +  C    ++ + +  F+ ++E++ +T T+     +I
Sbjct: 408 ALQFFELLLKSGTQPDHITFVGVLSACTHAGLVDKGLEYFDSIKEKHGLTHTADHYACLI 467

Query: 174 SGYCRAGEVEEGYCLFRRMP-RKNVVSWTAMIGGFAWNG 211
               R+G ++E   +  +MP   +   W +++GG   +G
Sbjct: 468 DLLSRSGRLQEAEDIIDKMPIEPDKFLWASLLGGCRIHG 506



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 44/175 (25%), Positives = 86/175 (49%), Gaps = 15/175 (8%)

Query: 7   PKSLVVHLTSSITKYSKRGFIDEAKALFQLM----PQRNVVSYNAMLSGFLQNGRLSEAR 62
           P+  +V  TS I+ Y++ G  DEA   F+L+     Q + +++  +LS     G + +  
Sbjct: 385 PRPDLVSWTSLISGYAQNGQPDEALQFFELLLKSGTQPDHITFVGVLSACTHAGLVDKGL 444

Query: 63  RLFEEMPERNVVSWTA-----MICGLADAGRVCEARKLFEEMP-ERNVVSWNSMVVGLIR 116
             F+ + E++ ++ TA     +I  L+ +GR+ EA  + ++MP E +   W S++ G   
Sbjct: 445 EYFDSIKEKHGLTHTADHYACLIDLLSRSGRLQEAEDIIDKMPIEPDKFLWASLLGGCRI 504

Query: 117 NGELNEARK----VFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVV 167
           +G L  A++    +F   P +N  ++  +   Y    + G    + + M+ R VV
Sbjct: 505 HGNLKLAKRAAEALFEIEP-ENPATYTTLANIYATAGLWGGVAEVRKVMDARGVV 558


>gi|297833652|ref|XP_002884708.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330548|gb|EFH60967.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 1028

 Score =  307 bits (786), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 198/639 (30%), Positives = 334/639 (52%), Gaps = 61/639 (9%)

Query: 15  TSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPE---- 70
           +S ++ YSK   ++ A  +F+ + +RN V +NAM+ G+  NG   +   LF +M      
Sbjct: 366 SSLVSMYSKCEKMEAAAKVFEALEERNDVLWNAMIRGYAHNGESHKVMELFMDMKSSGYN 425

Query: 71  -----------------------------------RNVVSWTAMICGLADAGRVCEARKL 95
                                              +N+    A++   A  G + +AR++
Sbjct: 426 IDDFTFTSLLSTCAVSHDLEMGSQFHSIIIKKKLTKNLFVGNALVDMYAKCGALEDARQI 485

Query: 96  FEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAI 155
           FE M +R+ VSWN+++ G +++   +EA  +F  M    ++S  A +A  ++ C     +
Sbjct: 486 FEHMCDRDNVSWNTIIGGYVQDENESEAFDLFMRMNSCGIVSDGACLASTLKACTNVHGL 545

Query: 156 VLFEEME--------ERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGF 207
              +++         +R + T +S+I  Y + G +E+   +F  MP  +VVS  A+I G+
Sbjct: 546 YQGKQVHCLSVKCGLDRVLHTGSSLIDMYSKCGIIEDARKVFSSMPEWSVVSMNALIAGY 605

Query: 208 AWNGFHKESLLLFIEM--KGICDNGNNCN----VQSCNSMINGYIRFGRLEEAQNLFDTV 261
           + N   +E+++LF EM  KG+  N +       V++C+   +  +  G     Q +    
Sbjct: 606 SQNNL-EEAVVLFQEMLTKGV--NPSEITFATIVEACHKPES--LTLGTQFHGQIIKWGF 660

Query: 262 PVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPD-RDAVAWTAMISGLVQNELFVEATYLF 320
               E    S++  Y++  +++ A  LF  +   +  V WT M+SG  QN  + EA   +
Sbjct: 661 SSEGEYLGISLLGLYMNSRRMAEACALFSELSSPKSIVLWTGMMSGHSQNGFYEEALKFY 720

Query: 321 MEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKC 380
            EMR  G  P  ATF  +       +++  GR IH ++     + D +  N LI MYAKC
Sbjct: 721 KEMRHDGALPDQATFVTVLRVCSVLSSLREGRAIHSLIFHLAHDLDELTSNTLIDMYAKC 780

Query: 381 GVIDNAYNIFSNMVSR-DLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGI 439
           G + ++  +F  M  R ++VSWNS++ G++ +G A + LK+F+SM +S   P+ +TFLG+
Sbjct: 781 GDMKSSSQVFDEMRRRSNVVSWNSLINGYAKNGYAEDALKIFDSMRQSHIMPDEITFLGV 840

Query: 440 LSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEP 499
           L+ACSHAG VS G ++F  M   Y I+   +H   M++LLGR G ++EA++F+     +P
Sbjct: 841 LTACSHAGKVSDGRKIFEMMIGQYGIEARVDHVACMVDLLGRWGYLQEADDFIEAQNLKP 900

Query: 500 DHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLR 559
           D R+W +LLGAC    G+    E AA+RL+EL+P N+ A+V+L NIYA+ GR  E + LR
Sbjct: 901 DARLWSSLLGACRI-HGDDMRGEIAAERLIELEPQNSSAYVLLSNIYASQGRWEEANALR 959

Query: 560 MDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
             M  +GV+KVPG SW+       +F +GD+  + + +I
Sbjct: 960 KAMRDRGVKKVPGYSWIDVGQRRHIFAAGDQSHSDIGKI 998



 Score =  163 bits (412), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 122/516 (23%), Positives = 242/516 (46%), Gaps = 32/516 (6%)

Query: 6   HPKSLVVHLTSS-------ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRL 58
           H KSL++ + S        +  Y+K   +  A+  F  + +++V ++N+MLS +   G+ 
Sbjct: 83  HSKSLILGIDSEGRLGNAIVDLYAKCAQVSYAEKQFNSL-EKDVTAWNSMLSMYSSIGQP 141

Query: 59  SEARR----LFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMP----ERNVVSWNSM 110
            +  R    LFE +   N  +++ ++   A    V   R++   M     ERN     ++
Sbjct: 142 GKVLRSFVSLFENLIFPNKFTFSIVLSTSARETNVEFGRQIHCSMIKMGLERNSYCGGAL 201

Query: 111 VVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEME----ERNV 166
           V    +   L +A++VF+ +   N + W  + +GYV+  +  EA+++FE M       + 
Sbjct: 202 VDMYAKCDRLGDAQRVFDGIVDPNTVCWTCLFSGYVKAGLPEEAVIVFERMRGEGHRPDH 261

Query: 167 VTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGI 226
           + + ++I+ Y   G++++   LF  MP  +VV+W  MI G    G    ++  F+ M+  
Sbjct: 262 LAFVTVINTYISLGKLKDARLLFGEMPSPDVVAWNVMISGHGKRGCEIVAIEYFLNMRKS 321

Query: 227 CDNGNNCNVQSCNSMIN--GYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSN 284
                   + S  S I     +  G +  A+ +   +     +  +S++  Y    ++  
Sbjct: 322 SVKSTRSTLGSVLSAIGIVANLDLGLVVHAEAIKLGLASNIYVG-SSLVSMYSKCEKMEA 380

Query: 285 AYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGA 344
           A  +F  + +R+ V W AMI G   N    +   LFM+M++ G    + TF+ L      
Sbjct: 381 AAKVFEALEERNDVLWNAMIRGYAHNGESHKVMELFMDMKSSGYNIDDFTFTSLLSTCAV 440

Query: 345 TANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSM 404
           + ++++G Q H +++K +   +L + N L+ MYAKCG +++A  IF +M  RD VSWN++
Sbjct: 441 SHDLEMGSQFHSIIIKKKLTKNLFVGNALVDMYAKCGALEDARQIFEHMCDRDNVSWNTI 500

Query: 405 VMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYK 464
           + G+      +E   +F  M   G   +       L AC++   + +G ++         
Sbjct: 501 IGGYVQDENESEAFDLFMRMNSCGIVSDGACLASTLKACTNVHGLYQGKQVH-----CLS 555

Query: 465 IQPGPEHYV----SMINLLGRAGKIKEAEEFVLRLP 496
           ++ G +  +    S+I++  + G I++A +    +P
Sbjct: 556 VKCGLDRVLHTGSSLIDMYSKCGIIEDARKVFSSMP 591



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 132/522 (25%), Positives = 256/522 (49%), Gaps = 56/522 (10%)

Query: 9   SLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEM 68
           SLV  L+SS T+  +R +         ++P  + + +  +L   L+  +L ++R++F+EM
Sbjct: 18  SLVRRLSSS-TELGRRVY-------GHVLPNHDQI-HQGLLEICLEQCKLFKSRKVFDEM 68

Query: 69  PER--------NVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGEL 120
           P R          V   ++I G+   GR+                  N++V    +  ++
Sbjct: 69  PHRLALALRIGKAVHSKSLILGIDSEGRL-----------------GNAIVDLYAKCAQV 111

Query: 121 NEARKVFNSMPIKNVISWNAMIAGYVECCMMGEA----IVLFEEMEERNVVTWTSMISGY 176
           + A K FNS+  K+V +WN+M++ Y      G+     + LFE +   N  T++ ++S  
Sbjct: 112 SYAEKQFNSLE-KDVTAWNSMLSMYSSIGQPGKVLRSFVSLFENLIFPNKFTFSIVLSTS 170

Query: 177 CRAGEVEEG---YCLFRRMP-RKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNN 232
            R   VE G   +C   +M   +N     A++  +A      ++  +F    GI D    
Sbjct: 171 ARETNVEFGRQIHCSMIKMGLERNSYCGGALVDMYAKCDRLGDAQRVF---DGIVDPNTV 227

Query: 233 CNVQSCNSMINGYIRFGRLEEAQNLFDTVPVR----DEISWTSMIDGYLSVGQVSNAYYL 288
           C   +C  + +GY++ G  EEA  +F+ +       D +++ ++I+ Y+S+G++ +A  L
Sbjct: 228 C--WTC--LFSGYVKAGLPEEAVIVFERMRGEGHRPDHLAFVTVINTYISLGKLKDARLL 283

Query: 289 FHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANI 348
           F  MP  D VAW  MISG  +    + A   F+ MR   V    +T   +  A G  AN+
Sbjct: 284 FGEMPSPDVVAWNVMISGHGKRGCEIVAIEYFLNMRKSSVKSTRSTLGSVLSAIGIVANL 343

Query: 349 DLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGF 408
           DLG  +H   +K    S++ + + L+SMY+KC  ++ A  +F  +  R+ V WN+M+ G+
Sbjct: 344 DLGLVVHAEAIKLGLASNIYVGSSLVSMYSKCEKMEAAAKVFEALEERNDVLWNAMIRGY 403

Query: 409 SHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPG 468
           +H+G +++ +++F  M  SG + +  TF  +LS C+ +  +  G + F+++    K+   
Sbjct: 404 AHNGESHKVMELFMDMKSSGYNIDDFTFTSLLSTCAVSHDLEMGSQ-FHSIIIKKKLTKN 462

Query: 469 PEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGA 510
                +++++  + G +++A + +     + D+  W  ++G 
Sbjct: 463 LFVGNALVDMYAKCGALEDARQ-IFEHMCDRDNVSWNTIIGG 503



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 74/265 (27%), Positives = 126/265 (47%), Gaps = 52/265 (19%)

Query: 11  VVHLTSS-ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEM- 68
           V+H  SS I  YSK G I++A+ +F  MP+ +VVS NA+++G+ QN  L EA  LF+EM 
Sbjct: 563 VLHTGSSLIDMYSKCGIIEDARKVFSSMPEWSVVSMNALIAGYSQNN-LEEAVVLFQEML 621

Query: 69  --------------------PER---------NVVSW----------TAMICGLADAGRV 89
                               PE           ++ W           +++    ++ R+
Sbjct: 622 TKGVNPSEITFATIVEACHKPESLTLGTQFHGQIIKWGFSSEGEYLGISLLGLYMNSRRM 681

Query: 90  CEARKLFEEMPE-RNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVEC 148
            EA  LF E+   +++V W  M+ G  +NG   EA K +  M     +   A     +  
Sbjct: 682 AEACALFSELSSPKSIVLWTGMMSGHSQNGFYEEALKFYKEMRHDGALPDQATFVTVLRV 741

Query: 149 CMM------GEAI--VLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRK-NVVS 199
           C +      G AI  ++F    + + +T  ++I  Y + G+++    +F  M R+ NVVS
Sbjct: 742 CSVLSSLREGRAIHSLIFHLAHDLDELTSNTLIDMYAKCGDMKSSSQVFDEMRRRSNVVS 801

Query: 200 WTAMIGGFAWNGFHKESLLLFIEMK 224
           W ++I G+A NG+ +++L +F  M+
Sbjct: 802 WNSLINGYAKNGYAEDALKIFDSMR 826


>gi|224069617|ref|XP_002303012.1| predicted protein [Populus trichocarpa]
 gi|222844738|gb|EEE82285.1| predicted protein [Populus trichocarpa]
          Length = 815

 Score =  307 bits (786), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 205/664 (30%), Positives = 321/664 (48%), Gaps = 86/664 (12%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWT 77
           I   S+RG + +A+ L   MP RN  S + ++SG++++G L+ ARR+F++  ER VV+WT
Sbjct: 50  IKDLSERGQLCQARQLLDQMPNRNSFSIDIIISGYVKSGNLTVARRIFDDTDERTVVAWT 109

Query: 78  AMICGLADAGRVCEARKLFEEM----PERNVVSW-------------------------- 107
            MI   + + R  +A KLF EM     + + V++                          
Sbjct: 110 TMIGAYSKSNRFGDAFKLFAEMHRSGSQPDYVTYITLLTGCNDLEVAKELYQAHAQIVKL 169

Query: 108 ---------NSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLF 158
                    N+++    + G L+ AR++F  M   + +S+N MI GY    +  EAI LF
Sbjct: 170 GHHLNHRVCNTLLDSYFKTGGLDSARRLFLEMCGWDSVSFNVMITGYANNGLNEEAIELF 229

Query: 159 EEMEE---------------------------------------RNVVTWTSMISGYCRA 179
            EM+                                        RNV    + +  Y + 
Sbjct: 230 VEMQNLGFKPSDFTFAAVISASVGLDDTAFGQQIHGFVVKTSFIRNVFVGNAFLDFYSKH 289

Query: 180 GEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCN 239
             V E   LF  MP  + VS+  +I  +AW G  KES+ LF E++    +  N    +  
Sbjct: 290 DCVNEVRKLFNEMPELDGVSYNVIITAYAWVGKVKESIDLFQELQFTTFDRKNFPFPTML 349

Query: 240 SMINGYI--RFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDA 297
           S+    +  + GR   AQ +         +S  S++D Y   G+   A  +F  +  R  
Sbjct: 350 SIAASSLDLQMGRQLHAQVVVSMADPDFRVS-NSLVDMYAKCGKFEEADRIFLRLSSRST 408

Query: 298 VAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCV 357
           V WTAMIS  VQ  L      LF EMR   V    ATF+ +  A+   A+I LG+Q+H  
Sbjct: 409 VPWTAMISANVQRGLHENGLKLFYEMRRANVSADQATFACVLKASANLASILLGKQLHSC 468

Query: 358 LMKTESESDLILENC-LISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANE 416
           ++++   +  +   C L+ MYA C  I +A   F  M  R++V+WN+++  ++ +G    
Sbjct: 469 VIRSGFMN--VYSGCALLDMYANCASIKDAIKTFEEMSERNVVTWNALLSAYAQNGDGKG 526

Query: 417 TLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMI 476
           TLK FE M+ SG  P+SV+FL IL+ACSH  LV  G + FN M  VY + P  EHY +M+
Sbjct: 527 TLKSFEEMIMSGYQPDSVSFLCILTACSHCRLVEEGLKYFNDMSGVYNLAPKREHYTAMV 586

Query: 477 NLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPL-N 535
           + L R+G+  EAE+ + ++PFEPD  +W ++L +C     N  +A  AA +L  +  L +
Sbjct: 587 DALCRSGRFDEAEKLMGQMPFEPDEIVWTSVLNSCRI-HKNYALARKAAGQLFNMKVLRD 645

Query: 536 APAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQV 595
           A  +V + NI+A +G+     K++  M  +GVRK+P  SW+     + +F + D    Q 
Sbjct: 646 AAPYVTMSNIFAEAGQWDSVVKVKKAMRDRGVRKLPAYSWVEIKHKVHVFSANDDKHPQQ 705

Query: 596 AEIL 599
            EIL
Sbjct: 706 LEIL 709



 Score =  161 bits (408), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 124/518 (23%), Positives = 230/518 (44%), Gaps = 55/518 (10%)

Query: 45  YNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNV 104
           +N M+    + G+L +AR+L ++MP RN  S   +I G   +G +  AR++F++  ER V
Sbjct: 46  FNFMIKDLSERGQLCQARQLLDQMPNRNSFSIDIIISGYVKSGNLTVARRIFDDTDERTV 105

Query: 105 VSWNSMVVGLIRNGELNEARKVFNSM----PIKNVISWNAMIAGYVECCMMGEAIVLFEE 160
           V+W +M+    ++    +A K+F  M       + +++  ++ G   C  +  A  L++ 
Sbjct: 106 VAWTTMIGAYSKSNRFGDAFKLFAEMHRSGSQPDYVTYITLLTG---CNDLEVAKELYQA 162

Query: 161 MEE-------RNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFH 213
             +        N     +++  Y + G ++    LF  M   + VS+  MI G+A NG +
Sbjct: 163 HAQIVKLGHHLNHRVCNTLLDSYFKTGGLDSARRLFLEMCGWDSVSFNVMITGYANNGLN 222

Query: 214 KESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNL----FDTVPVRDEISW 269
           +E++ LF+EM+ +   G   +  +  ++I+  +        Q +      T  +R+    
Sbjct: 223 EEAIELFVEMQNL---GFKPSDFTFAAVISASVGLDDTAFGQQIHGFVVKTSFIRNVFVG 279

Query: 270 TSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVP 329
            + +D Y     V+    LF+ MP+ D V++  +I+         E+  LF E++     
Sbjct: 280 NAFLDFYSKHDCVNEVRKLFNEMPELDGVSYNVIITAYAWVGKVKESIDLFQELQFTTFD 339

Query: 330 PLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNI 389
             N  F  +   A ++ ++ +GRQ+H  ++ + ++ D  + N L+ MYAKCG  + A  I
Sbjct: 340 RKNFPFPTMLSIAASSLDLQMGRQLHAQVVVSMADPDFRVSNSLVDMYAKCGKFEEADRI 399

Query: 390 FSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLV 449
           F  + SR  V W +M+      GL    LK+F  M  +    +  TF  +L A ++   +
Sbjct: 400 FLRLSSRSTVPWTAMISANVQRGLHENGLKLFYEMRRANVSADQATFACVLKASANLASI 459

Query: 450 SRGWELFN--------------AMFDVY-----------KIQPGPEHYVSMINLLGRA-- 482
             G +L +              A+ D+Y             +   E  V   N L  A  
Sbjct: 460 LLGKQLHSCVIRSGFMNVYSGCALLDMYANCASIKDAIKTFEEMSERNVVTWNALLSAYA 519

Query: 483 ------GKIKEAEEFVLRLPFEPDHRIWGALLGACGFC 514
                 G +K  EE ++   ++PD   +  +L AC  C
Sbjct: 520 QNGDGKGTLKSFEEMIMS-GYQPDSVSFLCILTACSHC 556


>gi|225427963|ref|XP_002277549.1| PREDICTED: pentatricopeptide repeat-containing protein At2g21090
           [Vitis vinifera]
          Length = 612

 Score =  307 bits (786), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 167/484 (34%), Positives = 268/484 (55%), Gaps = 34/484 (7%)

Query: 139 NAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVV 198
           N +I  Y +C    EA  +F++M  RN+ +W +M+SGY + G ++    LF +MP K+VV
Sbjct: 99  NHLINMYAKCGKEVEARKVFDKMSARNLYSWNNMLSGYAKLGMIKPARKLFDKMPEKDVV 158

Query: 199 SWTAMIGGFAWNGFHKESLLLFIEMK--GICDNGNN------------------------ 232
           SW  M+   A  G+  E+L  + E +  GI  NG +                        
Sbjct: 159 SWNTMVIAHAQCGYWDEALRFYSEFRQLGIQCNGFSFAGVLTVCVKLKEVGLTRQVHGQI 218

Query: 233 ------CNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAY 286
                  NV   +S+++ Y++ G + +A+ LFD +  RD ++WT+M+ GY   G + +A 
Sbjct: 219 LVAGFLSNVVLSSSVLDAYVKCGLMGDARKLFDEMSARDVLAWTTMVSGYAKWGDMKSAN 278

Query: 287 YLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATA 346
            LF  MP+++ V+WTA+ISG  +N +  +A  LF +M    V P   TFS    A  + A
Sbjct: 279 ELFVEMPEKNPVSWTALISGYARNGMGHKALELFTKMMLFHVRPDQFTFSSCLCACASIA 338

Query: 347 NIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSR-DLVSWNSMV 405
           ++  G+QIH  L++   + + I+ + LI MY+KCG +     +F  M ++ D+V WN+++
Sbjct: 339 SLKHGKQIHAYLLRINFQPNTIVVSALIDMYSKCGSLGIGRKVFDLMGNKLDVVLWNTII 398

Query: 406 MGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKI 465
              + HG   E +++ + M+ SG  P+ +TF+ IL+ACSH+GLV +G   F +M   Y I
Sbjct: 399 SALAQHGCGEEAIQMLDDMVRSGAKPDKITFVVILNACSHSGLVQQGLNFFESMSCDYGI 458

Query: 466 QPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAA 525
            P  EHY  +I+LLGRAG  +E  + + ++P++PD R+W ALLG C    G+ E+   AA
Sbjct: 459 VPSQEHYACLIDLLGRAGCFEEVMDQLEKMPYKPDDRVWNALLGVCRI-HGHIELGRKAA 517

Query: 526 KRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMF 585
           +RL+EL+P ++ A+V+L +IYA  GR     K+R  M  + V+K    SWL     +  F
Sbjct: 518 ERLIELEPQSSTAYVLLSSIYAVLGRWESVQKVRQLMNERQVKKERAISWLEIENKVHSF 577

Query: 586 LSGD 589
              D
Sbjct: 578 SVSD 581



 Score = 95.5 bits (236), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 79/294 (26%), Positives = 143/294 (48%), Gaps = 29/294 (9%)

Query: 11  VVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPE 70
           VV  +S +  Y K G + +A+ LF  M  R+V+++  M+SG+ + G +  A  LF EMPE
Sbjct: 227 VVLSSSVLDAYVKCGLMGDARKLFDEMSARDVLAWTTMVSGYAKWGDMKSANELFVEMPE 286

Query: 71  RNVVSWTAMICGLADAGRVCEARKLFEEM------PERNVVSWNSMVVGLIRNGELNEAR 124
           +N VSWTA+I G A  G   +A +LF +M      P++   +++S +        L   +
Sbjct: 287 KNPVSWTALISGYARNGMGHKALELFTKMMLFHVRPDQ--FTFSSCLCACASIASLKHGK 344

Query: 125 KV------FNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEER-NVVTWTSMISGYC 177
           ++       N  P  N I  +A+I  Y +C  +G    +F+ M  + +VV W ++IS   
Sbjct: 345 QIHAYLLRINFQP--NTIVVSALIDMYSKCGSLGIGRKVFDLMGNKLDVVLWNTIISALA 402

Query: 178 RAGEVEEGYCLFRRMPRK----NVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNC 233
           + G  EE   +   M R     + +++  ++   + +G  ++ L  F  M   CD G   
Sbjct: 403 QHGCGEEAIQMLDDMVRSGAKPDKITFVVILNACSHSGLVQQGLNFFESMS--CDYGIVP 460

Query: 234 NVQSCNSMINGYIRFGRLEEAQNLFDTVPVR-DEISWTSM-----IDGYLSVGQ 281
           + +    +I+   R G  EE  +  + +P + D+  W ++     I G++ +G+
Sbjct: 461 SQEHYACLIDLLGRAGCFEEVMDQLEKMPYKPDDRVWNALLGVCRIHGHIELGR 514


>gi|297822703|ref|XP_002879234.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297325073|gb|EFH55493.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 740

 Score =  306 bits (785), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 182/555 (32%), Positives = 288/555 (51%), Gaps = 16/555 (2%)

Query: 47  AMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADA-GRVCEARKLFEEMPERNVV 105
           A LS F     L  AR++F+E+P+ N  +W  +I   A     VC      + +   +  
Sbjct: 73  AALSSF---ASLEYARKVFDEIPQPNSFTWNTLIRAYASGPDPVCSIWAFLDMVSSESQC 129

Query: 106 SWNSMVVGLIRNGELNEAR----KVFNSMPIK-----NVISWNAMIAGYVECCMMGEAIV 156
             N      +       +     +  + M IK     +V   N++I  Y  C  +  A  
Sbjct: 130 YPNKYTFPFLIKAAAEVSSLSLGQSLHGMAIKSAVGSDVFVANSLIHCYFSCGDLDSACK 189

Query: 157 LFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNV-VSWTAMIGGFAWNGFHKE 215
           +F  ++E++VV+W SMI+G+ + G  ++   LF++M  ++V  S   M+G  +     ++
Sbjct: 190 VFTTIKEKDVVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRD 249

Query: 216 SLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDG 275
                     I +N  N N+   N+M++ Y + G +E+A+ LFD +  +D ++WT+M+DG
Sbjct: 250 LEFGRRVCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDG 309

Query: 276 YLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNA-T 334
           Y        A  + + MP +D VAW A+IS   QN    EA  +F E++      LN  T
Sbjct: 310 YAISEDYEAAREVLNAMPKKDIVAWNALISAYEQNGKPNEALLVFHELQLQKNIKLNQIT 369

Query: 335 FSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMV 394
                 A      ++LGR IH  + K   + +  + + LI MY+KCG ++ A  +F+++ 
Sbjct: 370 LVSTLSACAQVGALELGRWIHSYIKKNGIKMNFYVTSALIHMYSKCGDLEKAREVFNSVE 429

Query: 395 SRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWE 454
            RD+  W++M+ G + HG  +E + +F  M E+   PN VTF  +  ACSH GLV     
Sbjct: 430 KRDVFVWSAMIGGLAMHGCGSEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVDEAES 489

Query: 455 LFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFC 514
           LF  M   Y I P  +HY  ++++LGR+G +++A +F+  +P  P   +WGALLGAC   
Sbjct: 490 LFYKMESSYGIVPEDKHYACIVDVLGRSGYLEKAVKFIEAMPIPPSTSVWGALLGACKI- 548

Query: 515 EGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCS 574
             N  +AE A  RLLEL+P N  AHV+L NIYA SG+     +LR  M + G++K PGCS
Sbjct: 549 HANLSLAEMACTRLLELEPRNDGAHVLLSNIYAKSGKWDNVSELRKHMRVTGLKKEPGCS 608

Query: 575 WLMRNGGIQMFLSGD 589
            +  +G I  FLSGD
Sbjct: 609 SIEIDGMIHEFLSGD 623



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 99/369 (26%), Positives = 182/369 (49%), Gaps = 21/369 (5%)

Query: 41  NVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMP 100
           +V   N+++  +   G L  A ++F  + E++VVSW +MI G    G   +A +LF++M 
Sbjct: 167 DVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFVQKGSPDKALELFKKME 226

Query: 101 ERNVVSWNSMVVGLI----RNGELNEARKVFNSMPIK----NVISWNAMIAGYVECCMMG 152
             +V + +  +VG++    +  +L   R+V + +       N+   NAM+  Y +C  + 
Sbjct: 227 SEDVKASHVTMVGVLSACAKIRDLEFGRRVCSYIEENRVNVNLTLANAMLDMYTKCGSIE 286

Query: 153 EAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGF 212
           +A  LF+ MEE++ VTWT+M+ GY  + + E    +   MP+K++V+W A+I  +  NG 
Sbjct: 287 DAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNAMPKKDIVAWNALISAYEQNGK 346

Query: 213 HKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVP---VRDEISW 269
             E+LL+F E++         N  +  S ++   + G LE  + +   +    ++     
Sbjct: 347 PNEALLVFHELQ--LQKNIKLNQITLVSTLSACAQVGALELGRWIHSYIKKNGIKMNFYV 404

Query: 270 TS-MIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGV 328
           TS +I  Y   G +  A  +F+++  RD   W+AMI GL  +    EA  +F +M+   V
Sbjct: 405 TSALIHMYSKCGDLEKAREVFNSVEKRDVFVWSAMIGGLAMHGCGSEAVDMFYKMQEANV 464

Query: 329 PPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILEN----CLISMYAKCGVID 384
            P   TF+ +F A   T  +D   +   +  K ES   ++ E+    C++ +  + G ++
Sbjct: 465 KPNGVTFTNVFCACSHTGLVD---EAESLFYKMESSYGIVPEDKHYACIVDVLGRSGYLE 521

Query: 385 NAYNIFSNM 393
            A      M
Sbjct: 522 KAVKFIEAM 530



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 110/464 (23%), Positives = 193/464 (41%), Gaps = 126/464 (27%)

Query: 16  SSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERN--- 72
           S I  Y   G +D A  +F  + +++VVS+N+M++GF+Q G   +A  LF++M   +   
Sbjct: 173 SLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFVQKGSPDKALELFKKMESEDVKA 232

Query: 73  -------VVSWTAMICGLADAGRVC-----------------------------EARKLF 96
                  V+S  A I  L    RVC                             +A++LF
Sbjct: 233 SHVTMVGVLSACAKIRDLEFGRRVCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLF 292

Query: 97  EEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIV 156
           + M E++ V+W +M+ G   + +   AR+V N+MP K++++WNA+I+ Y +     EA++
Sbjct: 293 DAMEEKDNVTWTTMLDGYAISEDYEAAREVLNAMPKKDIVAWNALISAYEQNGKPNEALL 352

Query: 157 LFEEME-----ERNVVTWTSMISG-----------------------------------Y 176
           +F E++     + N +T  S +S                                    Y
Sbjct: 353 VFHELQLQKNIKLNQITLVSTLSACAQVGALELGRWIHSYIKKNGIKMNFYVTSALIHMY 412

Query: 177 CRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQ 236
            + G++E+   +F  + +++V  W+AMIGG A +G   E++ +F +M            Q
Sbjct: 413 SKCGDLEKAREVFNSVEKRDVFVWSAMIGGLAMHGCGSEAVDMFYKM------------Q 460

Query: 237 SCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRD 296
             N   NG                      +++T++       G V  A  LF+ M    
Sbjct: 461 EANVKPNG----------------------VTFTNVFCACSHTGLVDEAESLFYKMESSY 498

Query: 297 AVA----WTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGR 352
            +       A I  ++    ++E    F+E  A  +PP  + +  L GA    AN+ L  
Sbjct: 499 GIVPEDKHYACIVDVLGRSGYLEKAVKFIE--AMPIPPSTSVWGALLGACKIHANLSLAE 556

Query: 353 QIHCVLMKTESESD---LILENCLISMYAKCGVIDNAYNIFSNM 393
                L++ E  +D   ++L N    +YAK G  DN   +  +M
Sbjct: 557 MACTRLLELEPRNDGAHVLLSN----IYAKSGKWDNVSELRKHM 596


>gi|357438977|ref|XP_003589765.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355478813|gb|AES60016.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 960

 Score =  306 bits (785), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 178/597 (29%), Positives = 316/597 (52%), Gaps = 16/597 (2%)

Query: 16  SSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVS 75
           S +  Y K G +D A+ +F  + + ++  +N+M+ G+ Q     +A ++F  MPER+ VS
Sbjct: 186 SVVGMYVKCGDVDLAETVFFDIERPSLFCWNSMIYGYSQMYGPYKALQIFNRMPERDEVS 245

Query: 76  WTAMICGLADAGRVCEARKLFEEMPER----NVVSWNSMVVGLIRNGELNEAR----KVF 127
           W  +I   +  G   +   +F EM  +    N +++ S++       +L        ++ 
Sbjct: 246 WNTLISIFSQHGFGVQCLAMFVEMCNQGFSPNFMTYGSVLSACASTSDLKWGAHLHARIL 305

Query: 128 NSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYC 187
                 +++  N +I  Y +C  +  A  +F+ + E + ++W S+I+G    G  E+   
Sbjct: 306 RMEHSLDLVFGNGLIDMYAKCGCLDLAKRVFKSLREHDHISWNSLITGVVHFGLGEDALI 365

Query: 188 LFRRMPRKNVV----SWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMIN 243
           LF +M R +VV        ++G  +   +     LL         +G   +    N++I 
Sbjct: 366 LFNQMRRSSVVLDEFILPTILGVCSGPDYASTGELLH---GYTIKSGMGSSAPVGNAIIT 422

Query: 244 GYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAM 303
            Y + G  ++A  +F  +P+R+ ISWT+MI  +   G +  A   F  MP+R+ V W +M
Sbjct: 423 MYAKCGDTDKADLVFRLMPLRNTISWTAMITAFSRSGDIGKARGYFDMMPERNIVTWNSM 482

Query: 304 ISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTES 363
           +S  VQN    E   L++ MR++GV P   TF+    A    A + LG Q+     K   
Sbjct: 483 LSTYVQNGFSEEGLKLYVSMRSNGVQPDWITFTTSIRACADLAIVKLGMQVVTHATKFGL 542

Query: 364 ESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFES 423
             ++ + N +++MY++CG+I  A N F ++  +DL+SWN+M+  F+ +GL  + +  FE 
Sbjct: 543 SLNVSVANSIVTMYSRCGLIKEAKNTFDSIDDKDLISWNAMLAAFAQNGLGIKVIDTFED 602

Query: 424 MLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAG 483
           ML++   PN ++++ +LS CSH GLV+ G   F++M  V+ I P  EH+  M++LLGRAG
Sbjct: 603 MLKTECKPNHISYVSVLSGCSHMGLVAEGKHYFDSMTRVFGISPTNEHFSCMVDLLGRAG 662

Query: 484 KIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLC 543
            +++A++ +  +PF+P+  +W ALLG+C     +  +AE AAK+L+ELD   +  +V+L 
Sbjct: 663 LLEQAKDLIEGMPFKPNATVWSALLGSCR-VHHDLRLAETAAKKLMELDVEGSEGYVLLS 721

Query: 544 NIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEILL 600
           N+Y+ SG       +R  M +KG+R   GCSW+  +  + +F   +    Q+ E+ L
Sbjct: 722 NMYSESGELDNVADMRKLMKVKGIRTSRGCSWIEVDNRVHVFTVDETSHPQIKEVYL 778



 Score =  175 bits (444), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 136/542 (25%), Positives = 240/542 (44%), Gaps = 60/542 (11%)

Query: 21  YSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPER--NVVSWTA 78
           YS  G   +A  +FQ    RN+ ++N M+   + + R+S+A +LF+EMP R  + VSWT 
Sbjct: 53  YSNCGLTHDAFQVFQETHHRNIFTWNTMIRALVSSSRMSDAEKLFDEMPVRVKDSVSWTT 112

Query: 79  MICGLADAGRVCEARKLFEEM--------PERNVVSWNSMVVGLIRNGELNEARKVFNSM 130
           MI G +  G    + + F  M           +  S+ S++      G L ++R      
Sbjct: 113 MISGYSQNGFHSRSFETFSLMIRDTNDGGKNYDPFSFTSVMKAC---GSLGDSRLAIQLH 169

Query: 131 PIKNVISW-------NAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVE 183
            + + + +       N+++  YV+C  +  A  +F ++E  ++  W SMI GY +     
Sbjct: 170 ALVSKLGFGMETCIQNSVVGMYVKCGDVDLAETVFFDIERPSLFCWNSMIYGYSQMYGPY 229

Query: 184 EGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMIN 243
           +   +F RMP ++ VSW  +I  F+ +GF  + L +F+EM   C+ G + N  +  S+++
Sbjct: 230 KALQIFNRMPERDEVSWNTLISIFSQHGFGVQCLAMFVEM---CNQGFSPNFMTYGSVLS 286

Query: 244 GYIRFGRLEEAQNLFDTV----PVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVA 299
                  L+   +L   +       D +    +ID Y   G +  A  +F ++ + D ++
Sbjct: 287 ACASTSDLKWGAHLHARILRMEHSLDLVFGNGLIDMYAKCGCLDLAKRVFKSLREHDHIS 346

Query: 300 WTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLM 359
           W ++I+G+V   L  +A  LF +MR   V         + G          G  +H   +
Sbjct: 347 WNSLITGVVHFGLGEDALILFNQMRRSSVVLDEFILPTILGVCSGPDYASTGELLHGYTI 406

Query: 360 KTESESDLILENCLISMYAKCGVID-------------------------------NAYN 388
           K+   S   + N +I+MYAKCG  D                                A  
Sbjct: 407 KSGMGSSAPVGNAIITMYAKCGDTDKADLVFRLMPLRNTISWTAMITAFSRSGDIGKARG 466

Query: 389 IFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGL 448
            F  M  R++V+WNSM+  +  +G + E LK++ SM  +G  P+ +TF   + AC+   +
Sbjct: 467 YFDMMPERNIVTWNSMLSTYVQNGFSEEGLKLYVSMRSNGVQPDWITFTTSIRACADLAI 526

Query: 449 VSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALL 508
           V  G ++       + +        S++ +  R G IKEA+     +  + D   W A+L
Sbjct: 527 VKLGMQVVTHATK-FGLSLNVSVANSIVTMYSRCGLIKEAKNTFDSID-DKDLISWNAML 584

Query: 509 GA 510
            A
Sbjct: 585 AA 586



 Score =  105 bits (262), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 91/367 (24%), Positives = 154/367 (41%), Gaps = 56/367 (15%)

Query: 245 YIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDR--DAVAWTA 302
           Y   G   +A  +F     R+  +W +MI   +S  ++S+A  LF  MP R  D+V+WT 
Sbjct: 53  YSNCGLTHDAFQVFQETHHRNIFTWNTMIRALVSSSRMSDAEKLFDEMPVRVKDSVSWTT 112

Query: 303 MISGLVQNEL----FVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVL 358
           MISG  QN      F   + +  +    G      +F+ +  A G+  +  L  Q+H ++
Sbjct: 113 MISGYSQNGFHSRSFETFSLMIRDTNDGGKNYDPFSFTSVMKACGSLGDSRLAIQLHALV 172

Query: 359 MKTESESDLILENCLISMYAKCGVID-------------------------------NAY 387
            K     +  ++N ++ MY KCG +D                                A 
Sbjct: 173 SKLGFGMETCIQNSVVGMYVKCGDVDLAETVFFDIERPSLFCWNSMIYGYSQMYGPYKAL 232

Query: 388 NIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAG 447
            IF+ M  RD VSWN+++  FS HG   + L +F  M   G  PN +T+  +LSAC+   
Sbjct: 233 QIFNRMPERDEVSWNTLISIFSQHGFGVQCLAMFVEMCNQGFSPNFMTYGSVLSACASTS 292

Query: 448 LVSRGWELFNAMFDVYKIQPGPEHYVS------MINLLGRAGKIKEAEEFVLRLPFEPDH 501
            +  G  L   +  +       EH +       +I++  + G +  A+  V +   E DH
Sbjct: 293 DLKWGAHLHARILRM-------EHSLDLVFGNGLIDMYAKCGCLDLAKR-VFKSLREHDH 344

Query: 502 RIWGALLGAC---GFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCN--IYAASGRHVEEH 556
             W +L+      G  E    +     +  + LD    P  + +C+   YA++G  +  +
Sbjct: 345 ISWNSLITGVVHFGLGEDALILFNQMRRSSVVLDEFILPTILGVCSGPDYASTGELLHGY 404

Query: 557 KLRMDMG 563
            ++  MG
Sbjct: 405 TIKSGMG 411



 Score = 98.6 bits (244), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 65/203 (32%), Positives = 106/203 (52%), Gaps = 12/203 (5%)

Query: 4   RNHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARR 63
           R  P    +  T+ IT +S+ G I +A+  F +MP+RN+V++N+MLS ++QNG   E  +
Sbjct: 438 RLMPLRNTISWTAMITAFSRSGDIGKARGYFDMMPERNIVTWNSMLSTYVQNGFSEEGLK 497

Query: 64  LFEEMPERNV----VSWTAMICGLADAGRVCEARKLFEEMPE----RNVVSWNSMVVGLI 115
           L+  M    V    +++T  I   AD   V    ++     +     NV   NS+V    
Sbjct: 498 LYVSMRSNGVQPDWITFTTSIRACADLAIVKLGMQVVTHATKFGLSLNVSVANSIVTMYS 557

Query: 116 RNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEER----NVVTWTS 171
           R G + EA+  F+S+  K++ISWNAM+A + +  +  + I  FE+M +     N +++ S
Sbjct: 558 RCGLIKEAKNTFDSIDDKDLISWNAMLAAFAQNGLGIKVIDTFEDMLKTECKPNHISYVS 617

Query: 172 MISGYCRAGEVEEGYCLFRRMPR 194
           ++SG    G V EG   F  M R
Sbjct: 618 VLSGCSHMGLVAEGKHYFDSMTR 640



 Score = 49.7 bits (117), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 46/181 (25%), Positives = 87/181 (48%), Gaps = 13/181 (7%)

Query: 350 LGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFS 409
           + R++H  L+ +  +S L L N L+ MY+ CG+  +A+ +F     R++ +WN+M+    
Sbjct: 26  IARKLHAQLILSGLDSSLFLLNNLLHMYSNCGLTHDAFQVFQETHHRNIFTWNTMIRALV 85

Query: 410 HHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPG- 468
                ++  K+F+ M       +SV++  ++S  S  G  SR +E F+ M  +     G 
Sbjct: 86  SSSRMSDAEKLFDEM--PVRVKDSVSWTTMISGYSQNGFHSRSFETFSLM--IRDTNDGG 141

Query: 469 ----PEHYVSMINLLGRAGKIKEA---EEFVLRLPFEPDHRIWGALLGACGFCEGNAEIA 521
               P  + S++   G  G  + A      V +L F  +  I  +++G    C G+ ++A
Sbjct: 142 KNYDPFSFTSVMKACGSLGDSRLAIQLHALVSKLGFGMETCIQNSVVGMYVKC-GDVDLA 200

Query: 522 E 522
           E
Sbjct: 201 E 201


>gi|359484390|ref|XP_002281719.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31430-like [Vitis vinifera]
          Length = 662

 Score =  306 bits (785), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 191/590 (32%), Positives = 306/590 (51%), Gaps = 52/590 (8%)

Query: 25  GFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLA 84
           G +  A+ +F  +    +  YN ++  F +NG   +A  LF ++ E           GL+
Sbjct: 80  GNLHYAERIFNYIDIPGLFIYNLVIKAFTKNGSFRKAVLLFRQLREE----------GLS 129

Query: 85  DAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISW-----N 139
                          P+     +    +G +  GE+ E  KV+  + +K+ + +     N
Sbjct: 130 ---------------PDNFTYPFVFKAIGCL--GEVREGEKVYGFV-VKSGLEFDTYVCN 171

Query: 140 AMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKN--- 196
           +++  Y E   +     +FEEM +R+VV+W  +ISGY +    E+   +FRRM +++   
Sbjct: 172 SLMDMYAEVGRVQNLRQVFEEMPQRDVVSWNVLISGYVKCRRYEDAVDVFRRMQQQSSLR 231

Query: 197 -----VVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRL 251
                VVS  +           KE      E  G         ++  N++++ Y + G L
Sbjct: 232 PNEATVVSTLSACIALKMLELGKEIHRYVREQLGF-------TIKIGNALVDMYCKCGHL 284

Query: 252 EEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNE 311
             A+ +F+ +P++  I WTSM+ GY++ GQ+  A  LF   P RD V WTAMI+G VQ  
Sbjct: 285 SIAREIFNDMPIKTVICWTSMVSGYVNCGQLDEARELFERSPVRDVVLWTAMINGYVQFN 344

Query: 312 LFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILEN 371
            F +A  LF EM+   V P   T   L         ++ G+ IH  + + +   D ++  
Sbjct: 345 RFDDAVALFREMQIKRVSPDRFTLVALLTGCAQLGTLEQGKWIHGYIDENKIMIDAVVGT 404

Query: 372 CLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHP 431
            LI MYAKCG I+ +  IF+ +  +D  SW S++ G + +G  ++ L++F  M+++G  P
Sbjct: 405 ALIEMYAKCGFIEKSLEIFNGLKEKDTASWTSIICGLAMNGKTSKALELFAEMVQTGVKP 464

Query: 432 NSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEF 491
           + +TF+G+LSACSH GLV  G + F +M  VY+I+P  EHY  +I+LLGRAG++ EAEE 
Sbjct: 465 DDITFIGVLSACSHGGLVEEGRKHFRSMTAVYQIEPKLEHYGCLIDLLGRAGQLDEAEEL 524

Query: 492 VLRLPFEPDHRI---WGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAA 548
           + + P   +  I   +GALL AC    GN E+ E  AKRL+ ++  ++  H +L NIYA+
Sbjct: 525 IEKSPNVNNEVIVPLYGALLSACR-THGNVEMGERVAKRLVGIESGDSSVHTLLANIYAS 583

Query: 549 SGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
           + R  +  K+R  M   GV+KVPGCS +  NG +  FL GD    ++ EI
Sbjct: 584 ADRWEDVTKVRRKMKDLGVKKVPGCSSVEVNGIVHEFLVGDASHPEMREI 633



 Score =  149 bits (376), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 110/376 (29%), Positives = 180/376 (47%), Gaps = 41/376 (10%)

Query: 21  YSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERN-------- 72
           Y++ G +   + +F+ MPQR+VVS+N ++SG+++  R  +A  +F  M +++        
Sbjct: 177 YAEVGRVQNLRQVFEEMPQRDVVSWNVLISGYVKCRRYEDAVDVFRRMQQQSSLRPNEAT 236

Query: 73  VVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPI 132
           VVS  +    L       E  +   E     +   N++V    + G L+ AR++FN MPI
Sbjct: 237 VVSTLSACIALKMLELGKEIHRYVREQLGFTIKIGNALVDMYCKCGHLSIAREIFNDMPI 296

Query: 133 KNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRM 192
           K VI W +M++GYV C  + EA  LFE    R+VV WT+MI+GY +    ++   LFR M
Sbjct: 297 KTVICWTSMVSGYVNCGQLDEARELFERSPVRDVVLWTAMINGYVQFNRFDDAVALFREM 356

Query: 193 PRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLE 252
             K V          + + F   +LL      G  + G           I+GYI     +
Sbjct: 357 QIKRV----------SPDRFTLVALLTGCAQLGTLEQGK---------WIHGYI-----D 392

Query: 253 EAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNEL 312
           E + + D V        T++I+ Y   G +  +  +F+ + ++D  +WT++I GL  N  
Sbjct: 393 ENKIMIDAV------VGTALIEMYAKCGFIEKSLEIFNGLKEKDTASWTSIICGLAMNGK 446

Query: 313 FVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILEN- 371
             +A  LF EM   GV P + TF  +  A      ++ GR+ H   M    + +  LE+ 
Sbjct: 447 TSKALELFAEMVQTGVKPDDITFIGVLSACSHGGLVEEGRK-HFRSMTAVYQIEPKLEHY 505

Query: 372 -CLISMYAKCGVIDNA 386
            CLI +  + G +D A
Sbjct: 506 GCLIDLLGRAGQLDEA 521



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 101/409 (24%), Positives = 180/409 (44%), Gaps = 60/409 (14%)

Query: 46  NAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVV 105
           NA++  + + G LS AR +F +MP + V+ WT+M+ G  + G++ EAR+LFE  P R+VV
Sbjct: 272 NALVDMYCKCGHLSIAREIFNDMPIKTVICWTSMVSGYVNCGQLDEARELFERSPVRDVV 331

Query: 106 SWNSMVVGLIRNGELNEARKVFNSMPIKNV----ISWNAMIAGYVECCMMGEAIVLFEEM 161
            W +M+ G ++    ++A  +F  M IK V     +  A++ G  +   + +   +   +
Sbjct: 332 LWTAMINGYVQFNRFDDAVALFREMQIKRVSPDRFTLVALLTGCAQLGTLEQGKWIHGYI 391

Query: 162 EERNV----VTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESL 217
           +E  +    V  T++I  Y + G +E+   +F  +  K+  SWT++I G A NG   ++L
Sbjct: 392 DENKIMIDAVVGTALIEMYAKCGFIEKSLEIFNGLKEKDTASWTSIICGLAMNGKTSKAL 451

Query: 218 LLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEIS-----WTSM 272
            LF EM      G   +  +   +++     G +EE +  F ++    +I      +  +
Sbjct: 452 ELFAEM---VQTGVKPDDITFIGVLSACSHGGLVEEGRKHFRSMTAVYQIEPKLEHYGCL 508

Query: 273 IDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLN 332
           ID     GQ+  A  L    P+             V NE+ V               PL 
Sbjct: 509 IDLLGRAGQLDEAEELIEKSPN-------------VNNEVIV---------------PL- 539

Query: 333 ATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSN 392
             +  L  A     N+++G ++   L+  ES  D  +   L ++YA     ++   +   
Sbjct: 540 --YGALLSACRTHGNVEMGERVAKRLVGIES-GDSSVHTLLANIYASADRWEDVTKVRRK 596

Query: 393 MVSRDL----------VSWNSMVMGFSHHGLANETLKVFESMLESGTHP 431
           M  +DL          V  N +V  F     ++  ++   SML+S   P
Sbjct: 597 M--KDLGVKKVPGCSSVEVNGIVHEFLVGDASHPEMREIYSMLDSIAKP 643



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 71/258 (27%), Positives = 126/258 (48%), Gaps = 16/258 (6%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWT 77
           +  Y K G +  A+ +F  MP + V+ + +M+SG++  G+L EAR LFE  P R+VV WT
Sbjct: 275 VDMYCKCGHLSIAREIFNDMPIKTVICWTSMVSGYVNCGQLDEARELFERSPVRDVVLWT 334

Query: 78  AMICGLADAGRVCEARKLFEEMPERNV----VSWNSMVVGLIRNGELNEARKVF-----N 128
           AMI G     R  +A  LF EM  + V     +  +++ G  + G L + + +      N
Sbjct: 335 AMINGYVQFNRFDDAVALFREMQIKRVSPDRFTLVALLTGCAQLGTLEQGKWIHGYIDEN 394

Query: 129 SMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCL 188
            + I  V+   A+I  Y +C  + +++ +F  ++E++  +WTS+I G    G+  +   L
Sbjct: 395 KIMIDAVVG-TALIEMYAKCGFIEKSLEIFNGLKEKDTASWTSIICGLAMNGKTSKALEL 453

Query: 189 FRRMPRKNV----VSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMING 244
           F  M +  V    +++  ++   +  G  +E    F  M  +           C  +I+ 
Sbjct: 454 FAEMVQTGVKPDDITFIGVLSACSHGGLVEEGRKHFRSMTAVYQIEPKLEHYGC--LIDL 511

Query: 245 YIRFGRLEEAQNLFDTVP 262
             R G+L+EA+ L +  P
Sbjct: 512 LGRAGQLDEAEELIEKSP 529



 Score = 92.0 bits (227), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 67/261 (25%), Positives = 115/261 (44%), Gaps = 31/261 (11%)

Query: 278 SVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSV 337
           S+G +  A  +F+ +       +  +I    +N  F +A  LF ++R  G+ P N T+  
Sbjct: 78  SIGNLHYAERIFNYIDIPGLFIYNLVIKAFTKNGSFRKAVLLFRQLREEGLSPDNFTYPF 137

Query: 338 LFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRD 397
           +F A G    +  G +++  ++K+  E D  + N L+ MYA+ G + N   +F  M  RD
Sbjct: 138 VFKAIGCLGEVREGEKVYGFVVKSGLEFDTYVCNSLMDMYAEVGRVQNLRQVFEEMPQRD 197

Query: 398 LVSWNSMVMGFSHHGLANETLKVFESM-LESGTHPNSVTFLGILSACSHAGLVSRGWELF 456
           +VSWN ++ G+       + + VF  M  +S   PN  T +  LSAC    ++  G E+ 
Sbjct: 198 VVSWNVLISGYVKCRRYEDAVDVFRRMQQQSSLRPNEATVVSTLSACIALKMLELGKEIH 257

Query: 457 --------------NAMFDVY----KIQPGPEHY-----------VSMINLLGRAGKIKE 487
                         NA+ D+Y     +    E +            SM++     G++ E
Sbjct: 258 RYVREQLGFTIKIGNALVDMYCKCGHLSIAREIFNDMPIKTVICWTSMVSGYVNCGQLDE 317

Query: 488 AEEFVLRLPFEPDHRIWGALL 508
           A E   R P   D  +W A++
Sbjct: 318 ARELFERSPVR-DVVLWTAMI 337



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 56/200 (28%), Positives = 100/200 (50%), Gaps = 12/200 (6%)

Query: 5   NHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRL 64
           + P   V+  TS ++ Y   G +DEA+ LF+  P R+VV + AM++G++Q  R  +A  L
Sbjct: 293 DMPIKTVICWTSMVSGYVNCGQLDEARELFERSPVRDVVLWTAMINGYVQFNRFDDAVAL 352

Query: 65  FEEMPERNV----VSWTAMICGLADAGRVCEARKLFEEMPERNV----VSWNSMVVGLIR 116
           F EM  + V     +  A++ G A  G + + + +   + E  +    V   +++    +
Sbjct: 353 FREMQIKRVSPDRFTLVALLTGCAQLGTLEQGKWIHGYIDENKIMIDAVVGTALIEMYAK 412

Query: 117 NGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNV----VTWTSM 172
            G + ++ ++FN +  K+  SW ++I G        +A+ LF EM +  V    +T+  +
Sbjct: 413 CGFIEKSLEIFNGLKEKDTASWTSIICGLAMNGKTSKALELFAEMVQTGVKPDDITFIGV 472

Query: 173 ISGYCRAGEVEEGYCLFRRM 192
           +S     G VEEG   FR M
Sbjct: 473 LSACSHGGLVEEGRKHFRSM 492


>gi|302820037|ref|XP_002991687.1| hypothetical protein SELMODRAFT_133908 [Selaginella moellendorffii]
 gi|300140536|gb|EFJ07258.1| hypothetical protein SELMODRAFT_133908 [Selaginella moellendorffii]
          Length = 589

 Score =  306 bits (785), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 178/531 (33%), Positives = 269/531 (50%), Gaps = 41/531 (7%)

Query: 21  YSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMI 80
           Y + G I  A+ +F  MPQ  +VS+N++L+ + + G   ++  +F  MPE + +SW AMI
Sbjct: 98  YVRNGDIVLAREVFDRMPQWGLVSFNSILTAYSRIGSPEQSSVIFHWMPELDEISWNAMI 157

Query: 81  CGLADAGRVCEARK-LFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWN 139
              A +G    A+  LFE M ERN+VSWNS++    +N E   AR V   MP  +++S  
Sbjct: 158 AAFAHSGHSFAAKNNLFERMGERNIVSWNSLITAHAKNAEPELARAVLGKMPQHDIVSST 217

Query: 140 AMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVS 199
           A + GY     M  AI LF  M +RN+++W +++S Y     VE     F RMP+ ++ S
Sbjct: 218 AAMLGYAYTGDMSSAIALFLAMPQRNLISWNTLVSAYGHTASVEGAEDSFARMPKWSISS 277

Query: 200 WTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFD 259
           W   IG                                   +I GY + GR++ A  +F 
Sbjct: 278 W---IG-----------------------------------LIIGYCQGGRIQSALAVFR 299

Query: 260 TVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYL 319
            +P ++  +  +M+ G      +  A  LF  +P RD ++W+A+++G +Q+     A   
Sbjct: 300 DLPAKNTSACNAMLTGLCLNAVMDEALALFLAIPARDVISWSAIVTGFLQSGDARSAMKY 359

Query: 320 FMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAK 379
           F+ M   G+ P    F V   + GA +++  GR +H  +     +S   + N L+ MY K
Sbjct: 360 FLLMDLDGIKPDEMAFLVAIDSCGAASDLARGRFLHAEIDAAGYDSSSTVANSLVGMYGK 419

Query: 380 CGVIDNAYNIFS-NMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLG 438
           CG +  A  +F      R    WN+M+  +S  G   E L +  +M + GT P +VT++ 
Sbjct: 420 CGNLQEARRLFDRGGARRSSALWNTMISCYSQAGFVREALDLLHAMEQDGTIPTAVTYIA 479

Query: 439 ILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFE 498
            LSACSH GLV  G   F AM + Y I P  EHY  MI+LL RAG ++ AEEFV R+P  
Sbjct: 480 ALSACSHMGLVELGTHHFTAMSESYGIAPAAEHYACMIDLLSRAGILESAEEFVERMPVA 539

Query: 499 PDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAAS 549
           PD   W ALLGAC    G  + AE  A+R L+     A ++++L N+ A S
Sbjct: 540 PDGIAWTALLGACK-SHGGVDAAERVAERALQKGGQWASSYILLSNLQACS 589



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 115/456 (25%), Positives = 198/456 (43%), Gaps = 55/456 (12%)

Query: 1   MSERNHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSE 60
           M ERN     +V   S IT ++K    + A+A+   MPQ ++VS  A + G+   G +S 
Sbjct: 177 MGERN-----IVSWNSLITAHAKNAEPELARAVLGKMPQHDIVSSTAAMLGYAYTGDMSS 231

Query: 61  ARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGEL 120
           A  LF  MP+RN++SW  ++        V  A   F  MP+ ++ SW  +++G  + G +
Sbjct: 232 AIALFLAMPQRNLISWNTLVSAYGHTASVEGAEDSFARMPKWSISSWIGLIIGYCQGGRI 291

Query: 121 NEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAG 180
             A  VF  +P KN  + NAM+ G     +M EA+ LF  +  R+V++W+++++G+ ++G
Sbjct: 292 QSALAVFRDLPAKNTSACNAMLTGLCLNAVMDEALALFLAIPARDVISWSAIVTGFLQSG 351

Query: 181 EVEEGYCLFRRMP----RKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQ 236
           +       F  M     + + +++   I              L  E+      G + +  
Sbjct: 352 DARSAMKYFLLMDLDGIKPDEMAFLVAIDSCGAASDLARGRFLHAEIDAA---GYDSSST 408

Query: 237 SCNSMINGYIRFGRLEEAQNLFDTVPVRDEIS-WTSMIDGYLSVGQVSNAYYLFHNMPDR 295
             NS++  Y + G L+EA+ LFD    R   + W +MI  Y   G V  A  L H M   
Sbjct: 409 VANSLVGMYGKCGNLQEARRLFDRGGARRSSALWNTMISCYSQAGFVREALDLLHAMEQD 468

Query: 296 ----DAVAWTAMISGLVQNELFVEATYLFMEM-RAHGVPPLNATFSVLFGAAGATANIDL 350
                AV + A +S      L    T+ F  M  ++G+ P    ++              
Sbjct: 469 GTIPTAVTYIAALSACSHMGLVELGTHHFTAMSESYGIAPAAEHYA-------------- 514

Query: 351 GRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNM-VSRDLVSWNSMVMGFS 409
                                C+I + ++ G++++A      M V+ D ++W +++    
Sbjct: 515 ---------------------CMIDLLSRAGILESAEEFVERMPVAPDGIAWTALLGACK 553

Query: 410 HHGLANETLKVFESMLESGTH-PNSVTFLGILSACS 444
            HG  +   +V E  L+ G    +S   L  L ACS
Sbjct: 554 SHGGVDAAERVAERALQKGGQWASSYILLSNLQACS 589



 Score = 99.0 bits (245), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 90/402 (22%), Positives = 163/402 (40%), Gaps = 63/402 (15%)

Query: 162 EERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFI 221
           ++ + +    +I  Y   G ++E +  F ++ R N  SW  ++G +  NG         +
Sbjct: 53  QDHDTLLGNLLIQMYSSCGSMDEAHLAFSQIQRSNTFSWNILLGAYVRNGD-------IV 105

Query: 222 EMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQ 281
             + + D      + S NS++  Y R G  E++  +F  +P  DEISW +MI  +   G 
Sbjct: 106 LAREVFDRMPQWGLVSFNSILTAYSRIGSPEQSSVIFHWMPELDEISWNAMIAAFAHSGH 165

Query: 282 VSNAY-YLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNA------- 333
              A   LF  M +R+ V+W ++I+   +N     A  +  +M  H +    A       
Sbjct: 166 SFAAKNNLFERMGERNIVSWNSLITAHAKNAEPELARAVLGKMPQHDIVSSTAAMLGYAY 225

Query: 334 --------------------TFSVLFGAAGATANID-----------------LGRQI-H 355
                               +++ L  A G TA+++                 +G  I +
Sbjct: 226 TGDMSSAIALFLAMPQRNLISWNTLVSAYGHTASVEGAEDSFARMPKWSISSWIGLIIGY 285

Query: 356 CVLMKTESE----SDLILEN---CLISMYAKC--GVIDNAYNIFSNMVSRDLVSWNSMVM 406
           C   + +S      DL  +N   C   +   C   V+D A  +F  + +RD++SW+++V 
Sbjct: 286 CQGGRIQSALAVFRDLPAKNTSACNAMLTGLCLNAVMDEALALFLAIPARDVISWSAIVT 345

Query: 407 GFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQ 466
           GF   G A   +K F  M   G  P+ + FL  + +C  A  ++RG    +A  D     
Sbjct: 346 GFLQSGDARSAMKYFLLMDLDGIKPDEMAFLVAIDSCGAASDLARG-RFLHAEIDAAGYD 404

Query: 467 PGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALL 508
                  S++ + G+ G ++EA     R        +W  ++
Sbjct: 405 SSSTVANSLVGMYGKCGNLQEARRLFDRGGARRSSALWNTMI 446



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/115 (28%), Positives = 61/115 (53%), Gaps = 4/115 (3%)

Query: 351 GRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSH 410
           G+++H  ++ +  + D +L N LI MY+ CG +D A+  FS +   +  SWN ++  +  
Sbjct: 41  GKRLHAHIVASRQDHDTLLGNLLIQMYSSCGSMDEAHLAFSQIQRSNTFSWNILLGAYVR 100

Query: 411 HGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKI 465
           +G      +VF+ M + G     V+F  IL+A S  G   +   +F+ M ++ +I
Sbjct: 101 NGDIVLAREVFDRMPQWGL----VSFNSILTAYSRIGSPEQSSVIFHWMPELDEI 151


>gi|225459793|ref|XP_002284799.1| PREDICTED: pentatricopeptide repeat-containing protein At2g33680
           [Vitis vinifera]
 gi|302141693|emb|CBI18896.3| unnamed protein product [Vitis vinifera]
          Length = 703

 Score =  306 bits (784), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 205/646 (31%), Positives = 327/646 (50%), Gaps = 62/646 (9%)

Query: 9   SLVVHLTSSITK-YSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGR--LSEARRLF 65
           S  V++ +S+   Y+K   + EAK +F+ +  ++VVS+N +++G+ Q+G    S    LF
Sbjct: 37  SSCVYIANSLVNLYAKCQRLREAKFVFERIQNKDVVSWNCIINGYSQHGPSGSSHVMELF 96

Query: 66  EEMPERNVVSWTAMICG-------LADA--GRVCEARKLFEEMPE-RNVVSWNSMVVGLI 115
           + M   N         G       L DA  GR+  A  +  +M   R+V   +S++    
Sbjct: 97  QRMRAENTAPNAHTFAGVFTAASTLVDAAGGRLAHAVAI--KMDSCRDVFVGSSLMNMYC 154

Query: 116 RNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLF----EEMEERNVVTWTS 171
           + G   EARKVF++MP +N +SW  MI+GY    +  EA+ LF     E E  N   +TS
Sbjct: 155 KAGLTPEARKVFDTMPERNSVSWATMISGYASQKLAAEALGLFRLMRREEEGENEFVFTS 214

Query: 172 MISG-----------------------------------YCRAGEVEEGYCLFRRMPRKN 196
           ++S                                    Y + G +++    F     KN
Sbjct: 215 VLSALTLPELVNNGKQIHCIAVKNGLLSIVSVGNALVTMYAKCGSLDDALQTFETSSDKN 274

Query: 197 VVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQN 256
            ++W+AMI G+A +G   ++L LF  M     +G   +  +   +IN     G   E + 
Sbjct: 275 SITWSAMITGYAQSGDSDKALKLFSSMH---LSGIRPSEFTFVGVINACSDLGAAWEGKQ 331

Query: 257 LFD---TVPVRDEIS-WTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNEL 312
           + D    +    +I   T+++D Y     + +A   F  + + D V WT+MI G VQN  
Sbjct: 332 VHDYLLKLGFESQIYVMTALVDMYAKCSSIVDARKGFDYLQEPDIVLWTSMIGGYVQNGE 391

Query: 313 FVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENC 372
             +A  L+  M   G+ P   T + +  A  + A ++ G+QIH   +K     ++ + + 
Sbjct: 392 NEDALSLYGRMEMEGILPNELTMASVLKACSSLAALEQGKQIHARTVKYGFGLEVPIGSA 451

Query: 373 LISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPN 432
           L +MYAKCG + +   +F  M +RD++SWN+M+ G S +G   E L++FE M   GT P+
Sbjct: 452 LSTMYAKCGCLKDGTLVFRRMPARDVISWNAMISGLSQNGCGKEALELFEEMQLEGTKPD 511

Query: 433 SVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFV 492
            VTF+ ILSACSH GLV RGW  F  MFD + + P  EHY  M+++L RAGK+KEA EF 
Sbjct: 512 YVTFVNILSACSHMGLVERGWGYFRMMFDEFGMDPRVEHYACMVDILSRAGKLKEAIEFT 571

Query: 493 LRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRH 552
                +    +W  +LGAC     N E+  +A ++L+EL    + A+V+L +IY+A GR 
Sbjct: 572 ESATIDHGMCLWRIILGACRNYR-NYELGAYAGEKLMELGSQESSAYVLLSSIYSALGRW 630

Query: 553 VEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
            +  ++R  M L+GV K PGCSW+    G+ +F+  D++  Q+ +I
Sbjct: 631 EDVERVRRMMKLRGVSKEPGCSWIELKSGVHVFVVKDQMHPQIGDI 676



 Score = 98.6 bits (244), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 65/230 (28%), Positives = 106/230 (46%), Gaps = 30/230 (13%)

Query: 226 ICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNA 285
           I  + ++C V   NS++N Y +  RL EA+ +F+ +  +D +SW  +I+GY   G   ++
Sbjct: 32  IIKSSSSC-VYIANSLVNLYAKCQRLREAKFVFERIQNKDVVSWNCIINGYSQHGPSGSS 90

Query: 286 YYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGAT 345
           + +                              LF  MRA    P   TF+ +F AA   
Sbjct: 91  HVM-----------------------------ELFQRMRAENTAPNAHTFAGVFTAASTL 121

Query: 346 ANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMV 405
            +   GR  H V +K +S  D+ + + L++MY K G+   A  +F  M  R+ VSW +M+
Sbjct: 122 VDAAGGRLAHAVAIKMDSCRDVFVGSSLMNMYCKAGLTPEARKVFDTMPERNSVSWATMI 181

Query: 406 MGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWEL 455
            G++   LA E L +F  M       N   F  +LSA +   LV+ G ++
Sbjct: 182 SGYASQKLAAEALGLFRLMRREEEGENEFVFTSVLSALTLPELVNNGKQI 231



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 49/183 (26%), Positives = 96/183 (52%), Gaps = 9/183 (4%)

Query: 330 PLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNI 389
           P N +F           ++  G+ +H  ++K+ S S + + N L+++YAKC  +  A  +
Sbjct: 4   PSNRSFFTALLQYTHNRSLQKGKALHAQIIKSSS-SCVYIANSLVNLYAKCQRLREAKFV 62

Query: 390 FSNMVSRDLVSWNSMVMGFSHHGLANET--LKVFESMLESGTHPNSVTFLGILSACSHAG 447
           F  + ++D+VSWN ++ G+S HG +  +  +++F+ M    T PN+ TF G+ +A S   
Sbjct: 63  FERIQNKDVVSWNCIINGYSQHGPSGSSHVMELFQRMRAENTAPNAHTFAGVFTAASTL- 121

Query: 448 LVSRGWELFNAMFDVYKIQPGPEHYV--SMINLLGRAGKIKEAEEFVLRLPFEPDHRIWG 505
           + + G  L +A+    K+    + +V  S++N+  +AG   EA +    +P E +   W 
Sbjct: 122 VDAAGGRLAHAV--AIKMDSCRDVFVGSSLMNMYCKAGLTPEARKVFDTMP-ERNSVSWA 178

Query: 506 ALL 508
            ++
Sbjct: 179 TMI 181


>gi|449499218|ref|XP_004160754.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Cucumis sativus]
          Length = 766

 Score =  306 bits (784), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 194/658 (29%), Positives = 323/658 (49%), Gaps = 70/658 (10%)

Query: 5   NHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRL 64
           +H   L+ H+  +   YSK   ID A  LF  M QRN  S+  +++G  +NG   +    
Sbjct: 102 HHSLVLLNHVAHA---YSKCSDIDAACRLFDQMSQRNTFSWTVLIAGLAENGLFLDGFEF 158

Query: 65  FEEM------PERNVVSWTAMICGLADA---GRVCEARKLFEEMPERNVVSWNSMVVGLI 115
           F EM      P++   S    IC   D+   G +  A+ +         VS  +++    
Sbjct: 159 FCEMQSQGIFPDQFAYSGILQICIGLDSIELGNMVHAQIVIRGFTSHTFVS-TALLNMYA 217

Query: 116 RNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEME------------- 162
           +  E+ ++ KVFN+M   NV+SWNAMI G+    +  +A  LF  M              
Sbjct: 218 KLQEIEDSYKVFNTMTEVNVVSWNAMITGFTSNDLYLDAFDLFLRMMGEGVTPDAQTFIG 277

Query: 163 --------------------------ERNVVTWTSMISGYCRAGEVEEGYCLFRR--MPR 194
                                     + N +  T++I    + G ++E   +F    +  
Sbjct: 278 VAKAIGMLRDVNKAKEVSGYALELGVDSNTLVGTALIDMNSKCGSLQEARSIFNSHFITC 337

Query: 195 KNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGY-----IRFG 249
           +    W AMI G+  +GF++++L LF +M   C N    +  +  S+ N       +  G
Sbjct: 338 RFNAPWNAMISGYLRSGFNEKALELFAKM---CQNDIYLDHYTYCSVFNAIAALKCLSLG 394

Query: 250 RLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQ 309
           +   A+ +   + V       ++ + Y   G + +   +F+ M DRD ++WT++++   Q
Sbjct: 395 KKVHARAIKSGLEVNYVSISNAVANAYAKCGSLEDVRKVFNRMEDRDLISWTSLVTAYSQ 454

Query: 310 NELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLIL 369
              + +A  +F  MRA G+ P   TFS +  +      ++ G+Q+H ++ K   + D  +
Sbjct: 455 CSEWDKAIEIFSNMRAEGIAPNQFTFSSVLVSCANLCLLEYGQQVHGIICKVGLDMDKCI 514

Query: 370 ENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGT 429
           E+ L+ MYAKCG + +A  +F+ + + D VSW +++ G + HG+ ++ L++F  M++ G 
Sbjct: 515 ESALVDMYAKCGCLGDAKKVFNRISNADTVSWTAIIAGHAQHGIVDDALQLFRRMVQLGV 574

Query: 430 HPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAE 489
            PN+VTFL +L ACSH GLV  G + F  M   Y + P  EHY  +++LL R G + +A 
Sbjct: 575 EPNAVTFLCVLFACSHGGLVEEGLQYFKLMKKTYGLVPEMEHYACIVDLLSRVGHLNDAM 634

Query: 490 EFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAAS 549
           EF+ R+P EP+  +W  LLGAC    GN E+ E AA+++L     N+  +V+L N Y  S
Sbjct: 635 EFISRMPVEPNEMVWQTLLGACRV-HGNVELGELAAQKILSFKAENSATYVLLSNTYIES 693

Query: 550 GRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSG-------DKIPAQVAEILL 600
           G + +   LR  M  +GV+K PGCSW+  NG +  F +G       DKI A++ E+ L
Sbjct: 694 GSYKDGLSLRHVMKEQGVKKEPGCSWISVNGTLHKFYAGDQQHPEKDKIYAKLEELKL 751



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/142 (28%), Positives = 65/142 (45%), Gaps = 6/142 (4%)

Query: 351 GRQIHCVLMKTE--SESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGF 408
            + +H  L+K++  +   L+L N +   Y+KC  ID A  +F  M  R+  SW  ++ G 
Sbjct: 87  AKTVHGFLLKSKFSNHHSLVLLNHVAHAYSKCSDIDAACRLFDQMSQRNTFSWTVLIAGL 146

Query: 409 SHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPG 468
           + +GL  +  + F  M   G  P+   + GIL  C   GL S   EL N +     I+  
Sbjct: 147 AENGLFLDGFEFFCEMQSQGIFPDQFAYSGILQIC--IGLDS--IELGNMVHAQIVIRGF 202

Query: 469 PEHYVSMINLLGRAGKIKEAEE 490
             H      LL    K++E E+
Sbjct: 203 TSHTFVSTALLNMYAKLQEIED 224


>gi|242090705|ref|XP_002441185.1| hypothetical protein SORBIDRAFT_09g021880 [Sorghum bicolor]
 gi|241946470|gb|EES19615.1| hypothetical protein SORBIDRAFT_09g021880 [Sorghum bicolor]
          Length = 878

 Score =  306 bits (784), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 196/625 (31%), Positives = 319/625 (51%), Gaps = 53/625 (8%)

Query: 15  TSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPER--- 71
           TS +  Y K   + + + +F+ MP+RNVV++ ++L+G++Q+G LS+   LF  M      
Sbjct: 143 TSLVDMYMKWHSVVDGRKVFEAMPKRNVVTWTSLLTGYIQDGALSDVMELFFRMRAEGVW 202

Query: 72  -NVVSWTAMIC-----GLADAGR----------------VC--------------EARKL 95
            N V++ +++      G+ D GR                VC              EAR +
Sbjct: 203 PNSVTFASVLSVVASQGMVDLGRRVHAQSVKFGCCSTVFVCNSLMNMYAKCGLVEEARVV 262

Query: 96  FEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECC----MM 151
           F  M  R++VSWN+++ GL+ NG   EA ++F+       +   +  A  ++ C     +
Sbjct: 263 FCGMETRDMVSWNTLMAGLVLNGHDLEALQLFHDSRSSITMLTQSTYATVIKLCANIKQL 322

Query: 152 GEAIVLFEEMEERNVVTW----TSMISGYCRAGEVEEGYCLFRRMP-RKNVVSWTAMIGG 206
           G A  L   + +R   ++    T+++  Y +AG++     +F  M   +NVVSWTAMI G
Sbjct: 323 GLARQLHSSVLKRGFHSYGNVMTALMDAYSKAGQLGNALDIFLLMSGSQNVVSWTAMING 382

Query: 207 FAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDE 266
              NG    +  LF  M+   ++G   N  + ++++   +     +    +  T      
Sbjct: 383 CIQNGDVPLAAALFSRMR---EDGVAPNDFTYSTILTASVASLPPQIHAQVIKTNYECTS 439

Query: 267 ISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAH 326
           I  T+++  Y  +     A  +F  +  +D V+W+AM++   Q      AT +F++M  H
Sbjct: 440 IVGTALLASYSKLCNTEEALSIFKMIDQKDVVSWSAMLTCYAQAGDSDGATNIFIKMTMH 499

Query: 327 GVPPLNATFS-VLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDN 385
           G+ P   T S V+   A  TA +DLGRQ H + +K      L + + L+SMYA+ G I++
Sbjct: 500 GLKPNEFTISSVIDACASPTAGVDLGRQFHAISIKHRCHDALCVSSALVSMYARKGSIES 559

Query: 386 AYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSH 445
           A  IF     RDLVSWNSM+ G++ HG + + L VF  M   G   + VTFL ++  C+H
Sbjct: 560 AQCIFERQTDRDLVSWNSMLSGYAQHGYSQKALDVFRQMEAEGIEMDGVTFLSVIMGCAH 619

Query: 446 AGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWG 505
           AGLV  G   F++M   Y I P  EHY  M++L  RAGK+ EA   +  + F     +W 
Sbjct: 620 AGLVEEGQRYFDSMARDYGITPTMEHYACMVDLYSRAGKLDEAMSLIEGMSFPAGPMVWR 679

Query: 506 ALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLK 565
            LLGAC     N E+ + AA++LL L+P ++  +V+L NIY+A+G+  E+ ++R  M  K
Sbjct: 680 TLLGACKV-HKNVELGKLAAEKLLSLEPFDSATYVLLSNIYSAAGKWKEKDEVRKLMDTK 738

Query: 566 GVRKVPGCSWLMRNGGIQMFLSGDK 590
            V+K  GCSW+     +  F++ DK
Sbjct: 739 KVKKEAGCSWIQIKNKVHSFIASDK 763



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 95/394 (24%), Positives = 168/394 (42%), Gaps = 76/394 (19%)

Query: 92  ARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVF-NSMPIKNVISWNAMIAGYVECCM 150
           AR+ F+E+P RN +  +  +    R G +++A   F +             + G ++ C 
Sbjct: 57  ARQAFDEIPHRNTL--DHALFDHARRGSVHQALDHFLDVHRCHGGRVGGGALVGVLKVCG 114

Query: 151 MGEAIVLFEEM---------EERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWT 201
                VL +++         +  +V   TS++  Y +   V +G  +F  MP++NVV+WT
Sbjct: 115 SVPDRVLGKQLHGLCIRCGHDRGDVGVGTSLVDMYMKWHSVVDGRKVFEAMPKRNVVTWT 174

Query: 202 AMIGGFAWNGFHKESLLLFIEMK---------------------GICDNGNNCNVQS--- 237
           +++ G+  +G   + + LF  M+                     G+ D G   + QS   
Sbjct: 175 SLLTGYIQDGALSDVMELFFRMRAEGVWPNSVTFASVLSVVASQGMVDLGRRVHAQSVKF 234

Query: 238 --------CNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLF 289
                   CNS++N Y + G +EEA+ +F  +  RD +SW ++                 
Sbjct: 235 GCCSTVFVCNSLMNMYAKCGLVEEARVVFCGMETRDMVSWNTL----------------- 277

Query: 290 HNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANID 349
                         ++GLV N   +EA  LF + R+       +T++ +         + 
Sbjct: 278 --------------MAGLVLNGHDLEALQLFHDSRSSITMLTQSTYATVIKLCANIKQLG 323

Query: 350 LGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMV-SRDLVSWNSMVMGF 408
           L RQ+H  ++K    S   +   L+  Y+K G + NA +IF  M  S+++VSW +M+ G 
Sbjct: 324 LARQLHSSVLKRGFHSYGNVMTALMDAYSKAGQLGNALDIFLLMSGSQNVVSWTAMINGC 383

Query: 409 SHHGLANETLKVFESMLESGTHPNSVTFLGILSA 442
             +G       +F  M E G  PN  T+  IL+A
Sbjct: 384 IQNGDVPLAAALFSRMREDGVAPNDFTYSTILTA 417



 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 42/173 (24%), Positives = 78/173 (45%), Gaps = 14/173 (8%)

Query: 324 RAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKT-ESESDLILENCLISMYAKCGV 382
           R HG          +    G+  +  LG+Q+H + ++      D+ +   L+ MY K   
Sbjct: 95  RCHGGRVGGGALVGVLKVCGSVPDRVLGKQLHGLCIRCGHDRGDVGVGTSLVDMYMKWHS 154

Query: 383 IDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSA 442
           + +   +F  M  R++V+W S++ G+   G  ++ +++F  M   G  PNSVTF  +LS 
Sbjct: 155 VVDGRKVFEAMPKRNVVTWTSLLTGYIQDGALSDVMELFFRMRAEGVWPNSVTFASVLSV 214

Query: 443 CSHAGLVSRGWEL------FNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAE 489
            +  G+V  G  +      F     V+          S++N+  + G ++EA 
Sbjct: 215 VASQGMVDLGRRVHAQSVKFGCCSTVFVCN-------SLMNMYAKCGLVEEAR 260


>gi|449441574|ref|XP_004138557.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Cucumis sativus]
          Length = 766

 Score =  306 bits (783), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 194/658 (29%), Positives = 323/658 (49%), Gaps = 70/658 (10%)

Query: 5   NHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRL 64
           +H   L+ H+  +   YSK   ID A  LF  M QRN  S+  +++G  +NG   +    
Sbjct: 102 HHSLVLLNHVAHA---YSKCSDIDAACRLFDQMSQRNTFSWTVLIAGLAENGLFLDGFEF 158

Query: 65  FEEM------PERNVVSWTAMICGLADA---GRVCEARKLFEEMPERNVVSWNSMVVGLI 115
           F EM      P++   S    IC   D+   G +  A+ +         VS  +++    
Sbjct: 159 FCEMQSQGIFPDQFAYSGILQICIGLDSIELGNMVHAQIVIRGFTSHTFVS-TALLNMYA 217

Query: 116 RNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEME------------- 162
           +  E+ ++ KVFN+M   NV+SWNAMI G+    +  +A  LF  M              
Sbjct: 218 KLQEIEDSYKVFNTMTEVNVVSWNAMITGFTSNDLYLDAFDLFLRMMGEGVTPDAQTFIG 277

Query: 163 --------------------------ERNVVTWTSMISGYCRAGEVEEGYCLFRR--MPR 194
                                     + N +  T++I    + G ++E   +F    +  
Sbjct: 278 VAKAIGMLRDVNKAKEVSGYALELGVDSNTLVGTALIDMNSKCGSLQEARSIFNSHFITC 337

Query: 195 KNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGY-----IRFG 249
           +    W AMI G+  +GF++++L LF +M   C N    +  +  S+ N       +  G
Sbjct: 338 RFNAPWNAMISGYLRSGFNEKALELFAKM---CQNDIYLDHYTYCSVFNAIAALKCLSLG 394

Query: 250 RLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQ 309
           +   A+ +   + V       ++ + Y   G + +   +F+ M DRD ++WT++++   Q
Sbjct: 395 KKVHARAIKSGLEVNYVSISNAVANAYAKCGSLEDVRKVFNRMEDRDLISWTSLVTAYSQ 454

Query: 310 NELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLIL 369
              + +A  +F  MRA G+ P   TFS +  +      ++ G+Q+H ++ K   + D  +
Sbjct: 455 CSEWDKAIEIFSNMRAEGIAPNQFTFSSVLVSCANLCLLEYGQQVHGIICKVGLDMDKCI 514

Query: 370 ENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGT 429
           E+ L+ MYAKCG + +A  +F+ + + D VSW +++ G + HG+ ++ L++F  M++ G 
Sbjct: 515 ESALVDMYAKCGCLGDAKKVFNRISNADTVSWTAIIAGHAQHGIVDDALQLFRRMVQLGV 574

Query: 430 HPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAE 489
            PN+VTFL +L ACSH GLV  G + F  M   Y + P  EHY  +++LL R G + +A 
Sbjct: 575 EPNAVTFLCVLFACSHGGLVEEGLQYFKLMKKTYGLVPEMEHYACIVDLLSRVGHLNDAM 634

Query: 490 EFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAAS 549
           EF+ R+P EP+  +W  LLGAC    GN E+ E AA+++L     N+  +V+L N Y  S
Sbjct: 635 EFISRMPVEPNEMVWQTLLGACRV-HGNVELGELAAQKILSFKAENSATYVLLSNTYIES 693

Query: 550 GRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSG-------DKIPAQVAEILL 600
           G + +   LR  M  +GV+K PGCSW+  NG +  F +G       DKI A++ E+ L
Sbjct: 694 GSYKDGLSLRHLMKEQGVKKEPGCSWISVNGTLHKFYAGDQQHPEKDKIYAKLEELKL 751



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/142 (28%), Positives = 65/142 (45%), Gaps = 6/142 (4%)

Query: 351 GRQIHCVLMKTE--SESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGF 408
            + +H  L+K++  +   L+L N +   Y+KC  ID A  +F  M  R+  SW  ++ G 
Sbjct: 87  AKTVHGFLLKSKFSNHHSLVLLNHVAHAYSKCSDIDAACRLFDQMSQRNTFSWTVLIAGL 146

Query: 409 SHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPG 468
           + +GL  +  + F  M   G  P+   + GIL  C   GL S   EL N +     I+  
Sbjct: 147 AENGLFLDGFEFFCEMQSQGIFPDQFAYSGILQIC--IGLDS--IELGNMVHAQIVIRGF 202

Query: 469 PEHYVSMINLLGRAGKIKEAEE 490
             H      LL    K++E E+
Sbjct: 203 TSHTFVSTALLNMYAKLQEIED 224


>gi|297736155|emb|CBI24193.3| unnamed protein product [Vitis vinifera]
          Length = 1083

 Score =  306 bits (783), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 210/685 (30%), Positives = 323/685 (47%), Gaps = 96/685 (14%)

Query: 1   MSERNHPKSLVVHLTSSITKYSKRGF--IDEAKALFQLMPQRNVVSYNAMLSGFLQNGRL 58
           M E+N     V+  TS I+ Y+K G+  +  A+ +F  M  RN  S++ MLSG+++ G  
Sbjct: 301 MEEKN-----VISWTSLISGYAKHGYGHMAHARYVFDEMRHRNEASWSTMLSGYVRVGLY 355

Query: 59  SEARRLFEEM------PER----------------------------------NVVSWTA 78
            EA  LF +M      P                                    +V   TA
Sbjct: 356 EEAVGLFCQMWGLGVEPNGFMVASLITACSRSGYMADEGFQVHGFVVKTGILGDVYVGTA 415

Query: 79  MICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISW 138
           ++      G V  A+KLFEEMP+ NVVSW S++VG   +G   E   V+  M  + V   
Sbjct: 416 LVHFYGSIGLVYNAQKLFEEMPDHNVVSWTSLMVGYSDSGNPGEVLNVYQRMRQEGVSGN 475

Query: 139 NAMIAGYVECCMMGEAIVLFEEME--------ERNVVTWTSMISGYCRAGEVEEGYCLFR 190
               A     C + E  VL  ++         E +V    S+IS +     VEE   +F 
Sbjct: 476 QNTFATVTSSCGLLEDQVLGYQVLGHIIQYGFEDSVSVANSLISMFSSFSSVEEACYVFD 535

Query: 191 RMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGN------------------- 231
            M   +++SW AMI  +A +G  +ESL  F  M+ + +  N                   
Sbjct: 536 HMNECDIISWNAMISAYAHHGLCRESLRCFHWMRHLHNETNSTTLSSLLSVCSSVDNLKW 595

Query: 232 -------------NCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLS 278
                        + NV  CN+++  Y   GR E+A+ +F  +  RD ISW SM+  Y+ 
Sbjct: 596 GRGIHGLVVKLGLDSNVCICNTLLTLYSEAGRSEDAELVFQAMTERDLISWNSMMACYVQ 655

Query: 279 VGQVSNAYYLFHNM-----PDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNA 333
            G+  +   +   +     PDR  V W A+I G  +NE   EA   +  +R  G+P  N 
Sbjct: 656 DGKCLDGLKILAELLQMGKPDR--VTWNALIGGHAENEEPNEAVKAYKLIREKGIPA-NY 712

Query: 334 TFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNM 393
              V   A    A ++ G+Q+H +++K   ESDL + N  + MY KCG + +   +    
Sbjct: 713 ITMVSLAATANLAVLEEGQQLHGLVIKLGFESDLHVTNAAMDMYGKCGEMHDVLKMLPQP 772

Query: 394 VSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGW 453
           ++R  +SWN ++  F+ HG   +  + F  ML+ G  P+ VTF+ +LSAC+H GLV  G 
Sbjct: 773 INRSRLSWNILISAFARHGCFQKARETFHEMLKLGPKPDHVTFVSLLSACNHGGLVDEGL 832

Query: 454 ELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGF 513
             +++M   + + PG EH V +I+LLGR+G++  AE F+  +P  P+   W +LL AC  
Sbjct: 833 AYYDSMTREFGVFPGIEHCVCIIDLLGRSGRLSHAEGFIKEMPVPPNDLAWRSLLAACRI 892

Query: 514 CEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGC 573
             GN E+A   A+ LLELDP +  A+V+  N+ A SG+  +   LR +MG   ++K P C
Sbjct: 893 -HGNLELARKTAEHLLELDPSDDSAYVLYSNVCATSGKWEDVENLRKEMGSNNIKKQPAC 951

Query: 574 SWLMRNGGIQMFLSGDKIPAQVAEI 598
           SW+     +  F  G+K   Q + I
Sbjct: 952 SWVKLKDKVHSFGMGEKYHPQASRI 976



 Score =  201 bits (511), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 149/515 (28%), Positives = 250/515 (48%), Gaps = 44/515 (8%)

Query: 12  VHL-TSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPE 70
           +HL T  I  Y K G +  A+ +F  MP+R+VVS+ AM+SG+ QNGR  +A  LF +M  
Sbjct: 65  LHLNTKLIIFYVKVGDVIAARNVFDGMPERSVVSWTAMVSGYSQNGRFEKAFVLFSDMRH 124

Query: 71  RNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSM 130
             V +  A++   +  G++ +A  LF  M ER+VVSWN+M+ G    G  +++  +F SM
Sbjct: 125 CGVKANHALVDFHSKCGKMEDASYLFGTMMERDVVSWNAMIGGYAVQGFADDSFCMFRSM 184

Query: 131 PIKNVISWNAMIAGYVECCMMGEAIVLFEEME---------ERNVVTWTSMISGYCRAGE 181
               ++     +   +     G  +++  ++            ++VT   +I+ Y + G 
Sbjct: 185 LRGGLVPDCYTLGSVLRASAEGGGLIIANQIHGIITQLGYGSYDIVTGL-LINAYAKNGS 243

Query: 182 VEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSM 241
           +     L + M +K++ S TA+I G+A  G +                         N++
Sbjct: 244 LRSAKDLRKGMLKKDLFSSTALITGYAHEGIYTMG----------------------NAL 281

Query: 242 INGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLS--VGQVSNAYYLFHNMPDRDAVA 299
           I+ Y + G +E+A+  FD +  ++ ISWTS+I GY     G +++A Y+F  M  R+  +
Sbjct: 282 IDMYAKSGEIEDAKRAFDEMEEKNVISWTSLISGYAKHGYGHMAHARYVFDEMRHRNEAS 341

Query: 300 WTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANI-DLGRQIHCVL 358
           W+ M+SG V+  L+ EA  LF +M   GV P     + L  A   +  + D G Q+H  +
Sbjct: 342 WSTMLSGYVRVGLYEEAVGLFCQMWGLGVEPNGFMVASLITACSRSGYMADEGFQVHGFV 401

Query: 359 MKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETL 418
           +KT    D+ +   L+  Y   G++ NA  +F  M   ++VSW S+++G+S  G   E L
Sbjct: 402 VKTGILGDVYVGTALVHFYGSIGLVYNAQKLFEEMPDHNVVSWTSLMVGYSDSGNPGEVL 461

Query: 419 KVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMIN- 477
            V++ M + G   N  TF  + S+C        G+++   +     IQ G E  VS+ N 
Sbjct: 462 NVYQRMRQEGVSGNQNTFATVTSSCGLLEDQVLGYQVLGHI-----IQYGFEDSVSVANS 516

Query: 478 LLGRAGKIKEAEE--FVLRLPFEPDHRIWGALLGA 510
           L+         EE  +V     E D   W A++ A
Sbjct: 517 LISMFSSFSSVEEACYVFDHMNECDIISWNAMISA 551



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 78/339 (23%), Positives = 130/339 (38%), Gaps = 85/339 (25%)

Query: 229 NGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLS---------- 278
           NG   ++     +I  Y++ G +  A+N+FD +P R  +SWT+M+ GY            
Sbjct: 59  NGFGSDLHLNTKLIIFYVKVGDVIAARNVFDGMPERSVVSWTAMVSGYSQNGRFEKAFVL 118

Query: 279 ---------------------VGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEAT 317
                                 G++ +A YLF  M +RD V+W AMI G        ++ 
Sbjct: 119 FSDMRHCGVKANHALVDFHSKCGKMEDASYLFGTMMERDVVSWNAMIGGYAVQGFADDSF 178

Query: 318 YLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMK----------------- 360
            +F  M   G+ P   T   +  A+     + +  QIH ++ +                 
Sbjct: 179 CMFRSMLRGGLVPDCYTLGSVLRASAEGGGLIIANQIHGIITQLGYGSYDIVTGLLINAY 238

Query: 361 -----TESESDL-------------------------ILENCLISMYAKCGVIDNAYNIF 390
                  S  DL                          + N LI MYAK G I++A   F
Sbjct: 239 AKNGSLRSAKDLRKGMLKKDLFSSTALITGYAHEGIYTMGNALIDMYAKSGEIEDAKRAF 298

Query: 391 SNMVSRDLVSWNSMVMGFSHHGLAN--ETLKVFESMLESGTHPNSVTFLGILSACSHAGL 448
             M  ++++SW S++ G++ HG  +      VF+ M     H N  ++  +LS     GL
Sbjct: 299 DEMEEKNVISWTSLISGYAKHGYGHMAHARYVFDEM----RHRNEASWSTMLSGYVRVGL 354

Query: 449 VSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKE 487
                 LF  M+ +  ++P      S+I    R+G + +
Sbjct: 355 YEEAVGLFCQMWGL-GVEPNGFMVASLITACSRSGYMAD 392



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/145 (28%), Positives = 59/145 (40%), Gaps = 9/145 (6%)

Query: 351 GRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSH 410
           G  IH  L+     SDL L   LI  Y K G +  A N+F  M  R +VSW +MV G+S 
Sbjct: 49  GHLIHTHLITNGFGSDLHLNTKLIIFYVKVGDVIAARNVFDGMPERSVVSWTAMVSGYSQ 108

Query: 411 HGLANETLKVFESMLESGTHPNSVTFLGILSACSH--------AGLVSRGWELFNAMFDV 462
           +G   +   +F  M   G   N    +   S C            ++ R    +NAM   
Sbjct: 109 NGRFEKAFVLFSDMRHCGVKANH-ALVDFHSKCGKMEDASYLFGTMMERDVVSWNAMIGG 167

Query: 463 YKIQPGPEHYVSMINLLGRAGKIKE 487
           Y +Q   +    M   + R G + +
Sbjct: 168 YAVQGFADDSFCMFRSMLRGGLVPD 192


>gi|357479991|ref|XP_003610281.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355511336|gb|AES92478.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 783

 Score =  306 bits (783), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 189/645 (29%), Positives = 321/645 (49%), Gaps = 75/645 (11%)

Query: 16  SSITKYSKRGF----IDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEM--- 68
           +++TK +++ F       A+ALF  +P+ ++  +N ++ GF  N   S +  L+  +   
Sbjct: 45  ATLTKLTQKLFDFSATRHARALFFSVPKPDIFLFNVLVRGFSLNDSPSSSISLYTHLRRN 104

Query: 69  ----PER------------------------------NVVSWTAMICGLADAGRVCEARK 94
               P+                               NV   +A++       RV  ARK
Sbjct: 105 TNLSPDNFTYAFAVAACSNDKHLMLLHAHSIIDGYGSNVFVGSALVDLYCKFSRVVYARK 164

Query: 95  LFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEA 154
           +F+ MPER+ V WN+M+ GL++N   +++ ++F  M    V          V+   +   
Sbjct: 165 VFDGMPERDTVLWNTMINGLVKNCCFDDSIQLFREMVADGV---------RVDSSTVTAV 215

Query: 155 IVLFEEMEERNV-----------------VTWTSMISGYCRAGEVEEGYCLFRRMPRKNV 197
           +    E++E  V                    T +IS Y + G+V     LFRR+ R ++
Sbjct: 216 LPAAAELQELKVGMGIQCLALKIGFGFCDYVLTGLISLYSKCGDVNTARLLFRRINRPDL 275

Query: 198 VSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNL 257
           +++ AMI GF  NG  + S+ LF E+     +G   +  +   +I  +  FG L  A ++
Sbjct: 276 IAYNAMISGFTANGGTECSVKLFREL---LFSGERVSSSTIVGLIPLHSPFGHLHLACSI 332

Query: 258 ----FDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELF 313
                 +  + +    T+    Y  + ++  A +LF   P++  VAW AMISG  QN   
Sbjct: 333 HGFCVKSGIILNPTVSTAFTAIYNKLNEIDLARHLFDESPEKTVVAWNAMISGYTQNGST 392

Query: 314 VEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCL 373
             A  LF EM      P   T + +  A     ++  G+ +H ++     E ++ +   L
Sbjct: 393 ETAISLFKEMMKTEFTPNAVTITTILSACAQLGSLSFGKWVHHLIKSENLEPNIYVSTAL 452

Query: 374 ISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNS 433
           + MYAKCG I  A+ +F +M  ++ V+WN+M+ G+  HG  +E LK++  ML  G +P++
Sbjct: 453 VDMYAKCGNISEAWQLFDSMSEKNTVTWNTMIFGYGLHGYGHEALKLYNEMLHLGYNPSA 512

Query: 434 VTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVL 493
           VTFL +L ACSHAGLV  G E+F+ M + Y+I+P  EHY  M+++LGR+G++++A EF+ 
Sbjct: 513 VTFLSVLYACSHAGLVGEGEEIFHNMVNKYRIEPLIEHYACMVDILGRSGQLEKALEFIK 572

Query: 494 RLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHV 553
           ++P EP   +WG LLGAC     + +IA  A++RL ELDP +   +V+L NIY+      
Sbjct: 573 KMPVEPGPAVWGTLLGAC-MIHKDTDIARLASERLFELDPGSVGYYVLLSNIYSVERNFP 631

Query: 554 EEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
           +   +R  +  + + K PGC+ +  NG   +F+SGD+  +   +I
Sbjct: 632 KAASIRQVVKKRKLAKSPGCTLIEVNGTPHVFVSGDRSHSHATDI 676



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 87/333 (26%), Positives = 143/333 (42%), Gaps = 57/333 (17%)

Query: 14  LTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEM---PE 70
           LT  I+ YSK G ++ A+ LF+ + + ++++YNAM+SGF  NG    + +LF E+    E
Sbjct: 247 LTGLISLYSKCGDVNTARLLFRRINRPDLIAYNAMISGFTANGGTECSVKLFRELLFSGE 306

Query: 71  R------------------------------------NVVSWTAMICGLADAGRVCEARK 94
           R                                    N    TA          +  AR 
Sbjct: 307 RVSSSTIVGLIPLHSPFGHLHLACSIHGFCVKSGIILNPTVSTAFTAIYNKLNEIDLARH 366

Query: 95  LFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYV--ECCMMG 152
           LF+E PE+ VV+WN+M+ G  +NG    A  +F  M +K   + NA+    +   C  +G
Sbjct: 367 LFDESPEKTVVAWNAMISGYTQNGSTETAISLFKEM-MKTEFTPNAVTITTILSACAQLG 425

Query: 153 EAI-------VLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIG 205
                     ++  E  E N+   T+++  Y + G + E + LF  M  KN V+W  MI 
Sbjct: 426 SLSFGKWVHHLIKSENLEPNIYVSTALVDMYAKCGNISEAWQLFDSMSEKNTVTWNTMIF 485

Query: 206 GFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRD 265
           G+  +G+  E+L L+ EM  +   G N +  +  S++      G + E + +F  +  + 
Sbjct: 486 GYGLHGYGHEALKLYNEMLHL---GYNPSAVTFLSVLYACSHAGLVGEGEEIFHNMVNKY 542

Query: 266 EIS-----WTSMIDGYLSVGQVSNAYYLFHNMP 293
            I      +  M+D     GQ+  A      MP
Sbjct: 543 RIEPLIEHYACMVDILGRSGQLEKALEFIKKMP 575


>gi|147812559|emb|CAN70631.1| hypothetical protein VITISV_020725 [Vitis vinifera]
          Length = 713

 Score =  306 bits (783), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 195/572 (34%), Positives = 297/572 (51%), Gaps = 61/572 (10%)

Query: 46  NAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVV 105
           +A+L  + +NG++ E RR+F EMP RNVVSWTA+I GL  AG   EA   F EM  R+ V
Sbjct: 155 SALLDMYTKNGKIFEGRRVFHEMPMRNVVSWTAIITGLVRAGYNKEALVYFSEM-WRSRV 213

Query: 106 SWNSMVVGL-----IRNGELNEARKVFNSMPIK--NVISW--NAMIAGYVECCMMGEAIV 156
            ++S    +       +G LN  R++      K  +V S+  N +   Y +C  +   + 
Sbjct: 214 EYDSYTFAIALKACADSGALNYGREIHAQAMKKGFDVSSFVANTLATMYNKCGKLEYGLT 273

Query: 157 LFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNV----VSWTAMIGGFA---- 208
           LFE+M  R+VV+WT++I+   + G+ E     F RM   +V     ++ A+I G A    
Sbjct: 274 LFEKMSMRDVVSWTTIITTLVQMGQEECAVQAFIRMRESDVSPNEYTFAAVISGCANLAR 333

Query: 209 --WNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDE 266
             W G    +L+L +        G   ++   NS++  Y + G+L  +  +F  +  RD 
Sbjct: 334 IEW-GEQLHALILHL--------GLAASLSVENSIMTMYAKCGQLTSSSVIFHEMTRRDI 384

Query: 267 ISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAH 326
           +SW+++I GY   G VS A+ L         ++W                      MR  
Sbjct: 385 VSWSTIIAGYXQGGHVSEAFEL---------LSW----------------------MRME 413

Query: 327 GVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNA 386
           G  P     + +  A G  A ++ G+Q+H  ++    E   ++ + LI+MY KCG I+ A
Sbjct: 414 GPKPTEFALASVLSACGNMAILEHGKQLHAYVLSIGLEHTAMVLSALINMYCKCGSIEEA 473

Query: 387 YNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHA 446
             IF    + D+VSW +M+ G++ HG + E + +FE +   G  P+SVTF+G+LSACSHA
Sbjct: 474 SRIFDAAENDDIVSWTAMINGYAEHGYSREVIDLFEKIPRVGLRPDSVTFIGVLSACSHA 533

Query: 447 GLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGA 506
           GLV  G+  FNAM   Y+I P  EHY  MI+LL RAG++ +AE  +  +PF  D  +W  
Sbjct: 534 GLVDLGFHYFNAMSKKYQISPSKEHYGCMIDLLCRAGRLSDAEHMIEAMPFHRDDVVWST 593

Query: 507 LLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKG 566
           LL AC    G+ E     A+R+L+L+P  A  H+ L NIYA+ G+  E   +R  M  KG
Sbjct: 594 LLRACR-VHGDVERGRRTAERILQLEPNCAGTHITLANIYASKGKWREAADIRKLMKSKG 652

Query: 567 VRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
           V K PG SW+     +  F++GD+   Q  +I
Sbjct: 653 VIKEPGWSWIKVKDLVFAFVAGDRSHPQGEDI 684



 Score =  176 bits (446), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 119/437 (27%), Positives = 200/437 (45%), Gaps = 57/437 (13%)

Query: 98  EMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVL 157
           ++PE N       +  L++ G L  AR++F+ M  K+ ISW  +I+GYV      EA++L
Sbjct: 48  DLPESN-----KQLKELVKTGHLGNARRMFDKMSQKDEISWTTLISGYVNANDSSEALLL 102

Query: 158 FEEMEERN----------------------------------------VVTWTSMISGYC 177
           F+ M   +                                        V   ++++  Y 
Sbjct: 103 FKNMRVESGLRIDPFILSLAHKACGLNSDVNYGELLHGYAVKTGLVNSVFVGSALLDMYT 162

Query: 178 RAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEM--KGICDNGNNCNV 235
           + G++ EG  +F  MP +NVVSWTA+I G    G++KE+L+ F EM    +  +     +
Sbjct: 163 KNGKIFEGRRVFHEMPMRNVVSWTAIITGLVRAGYNKEALVYFSEMWRSRVEYDSYTFAI 222

Query: 236 QSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDR 295
                  +G + +GR   AQ +     V   ++  ++   Y   G++     LF  M  R
Sbjct: 223 ALKACADSGALNYGREIHAQAMKKGFDVSSFVA-NTLATMYNKCGKLEYGLTLFEKMSMR 281

Query: 296 DAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIH 355
           D V+WT +I+ LVQ      A   F+ MR   V P   TF+ +       A I+ G Q+H
Sbjct: 282 DVVSWTTIITTLVQMGQEECAVQAFIRMRESDVSPNEYTFAAVISGCANLARIEWGEQLH 341

Query: 356 CVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLAN 415
            +++     + L +EN +++MYAKCG + ++  IF  M  RD+VSW++++ G+   G  +
Sbjct: 342 ALILHLGLAASLSVENSIMTMYAKCGQLTSSSVIFHEMTRRDIVSWSTIIAGYXQGGHVS 401

Query: 416 ETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYV-- 473
           E  ++   M   G  P       +LSAC +  ++  G +L       Y +  G EH    
Sbjct: 402 EAFELLSWMRMEGPKPTEFALASVLSACGNMAILEHGKQLH-----AYVLSIGLEHTAMV 456

Query: 474 --SMINLLGRAGKIKEA 488
             ++IN+  + G I+EA
Sbjct: 457 LSALINMYCKCGSIEEA 473



 Score =  112 bits (280), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 111/501 (22%), Positives = 194/501 (38%), Gaps = 127/501 (25%)

Query: 21  YSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEM----PERNVVSW 76
           Y+K G I E + +F  MP RNVVS+ A+++G ++ G   EA   F EM     E +  ++
Sbjct: 161 YTKNGKIFEGRRVFHEMPMRNVVSWTAIITGLVRAGYNKEALVYFSEMWRSRVEYDSYTF 220

Query: 77  TAMICGLADAGRVCEARK-----------------------------------LFEEMPE 101
              +   AD+G +   R+                                   LFE+M  
Sbjct: 221 AIALKACADSGALNYGREIHAQAMKKGFDVSSFVANTLATMYNKCGKLEYGLTLFEKMSM 280

Query: 102 RNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNV-------------------ISW---- 138
           R+VVSW +++  L++ G+   A + F  M   +V                   I W    
Sbjct: 281 RDVVSWTTIITTLVQMGQEECAVQAFIRMRESDVSPNEYTFAAVISGCANLARIEWGEQL 340

Query: 139 ----------------NAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEV 182
                           N+++  Y +C  +  + V+F EM  R++V+W+++I+GY + G V
Sbjct: 341 HALILHLGLAASLSVENSIMTMYAKCGQLTSSSVIFHEMTRRDIVSWSTIIAGYXQGGHV 400

Query: 183 EEGYCLFRRM----PRKNVVSWTAMIGGFAWNGF--HKESLLLFIEMKGICDNGNNCNVQ 236
            E + L   M    P+    +  +++          H + L  ++   G+          
Sbjct: 401 SEAFELLSWMRMEGPKPTEFALASVLSACGNMAILEHGKQLHAYVLSIGL-----EHTAM 455

Query: 237 SCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRD 296
             +++IN Y + G +EEA  +FD     D +SWT+MI+GY   G       LF  +P   
Sbjct: 456 VLSALINMYCKCGSIEEASRIFDAAENDDIVSWTAMINGYAEHGYSREVIDLFEKIPRV- 514

Query: 297 AVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLG-RQIH 355
                                         G+ P + TF  +  A      +DLG    +
Sbjct: 515 ------------------------------GLRPDSVTFIGVLSACSHAGLVDLGFHYFN 544

Query: 356 CVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNM-VSRDLVSWNSMVMGFSHHGLA 414
            +  K +         C+I +  + G + +A ++   M   RD V W++++     HG  
Sbjct: 545 AMSKKYQISPSKEHYGCMIDLLCRAGRLSDAEHMIEAMPFHRDDVVWSTLLRACRVHGDV 604

Query: 415 NETLKVFESMLE-----SGTH 430
               +  E +L+     +GTH
Sbjct: 605 ERGRRTAERILQLEPNCAGTH 625



 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 78/339 (23%), Positives = 154/339 (45%), Gaps = 56/339 (16%)

Query: 19  TKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNV----V 74
           T Y+K G ++    LF+ M  R+VVS+  +++  +Q G+   A + F  M E +V     
Sbjct: 260 TMYNKCGKLEYGLTLFEKMSMRDVVSWTTIITTLVQMGQEECAVQAFIRMRESDVSPNEY 319

Query: 75  SWTAMICGLADAGRVCEARKLFEEMPERNVVSW----NSMVVGLIRNGELNEARKVFNSM 130
           ++ A+I G A+  R+    +L   +    + +     NS++    + G+L  +  +F+ M
Sbjct: 320 TFAAVISGCANLARIEWGEQLHALILHLGLAASLSVENSIMTMYAKCGQLTSSSVIFHEM 379

Query: 131 PIKNVISWNAMIAGYVECCMMGEAIVLFEEME---------------------------- 162
             ++++SW+ +IAGY +   + EA  L   M                             
Sbjct: 380 TRRDIVSWSTIIAGYXQGGHVSEAFELLSWMRMEGPKPTEFALASVLSACGNMAILEHGK 439

Query: 163 -----------ERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNG 211
                      E   +  +++I+ YC+ G +EE   +F      ++VSWTAMI G+A +G
Sbjct: 440 QLHAYVLSIGLEHTAMVLSALINMYCKCGSIEEASRIFDAAENDDIVSWTAMINGYAEHG 499

Query: 212 FHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEIS--- 268
           + +E + LF ++  +   G   +  +   +++     G ++   + F+ +  + +IS   
Sbjct: 500 YSREVIDLFEKIPRV---GLRPDSVTFIGVLSACSHAGLVDLGFHYFNAMSKKYQISPSK 556

Query: 269 --WTSMIDGYLSVGQVSNAYYLFHNMP-DRDAVAWTAMI 304
             +  MID     G++S+A ++   MP  RD V W+ ++
Sbjct: 557 EHYGCMIDLLCRAGRLSDAEHMIEAMPFHRDDVVWSTLL 595



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 67/288 (23%), Positives = 130/288 (45%), Gaps = 57/288 (19%)

Query: 9   SLVVHL---------TSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLS 59
           +L++HL          S +T Y+K G +  +  +F  M +R++VS++ +++G+ Q G +S
Sbjct: 342 ALILHLGLAASLSVENSIMTMYAKCGQLTSSSVIFHEMTRRDIVSWSTIIAGYXQGGHVS 401

Query: 60  EARRLFEEM------PERNVVSWTAMICG---LADAGRVCEARKLFEEMPERNVVSWNSM 110
           EA  L   M      P    ++     CG   + + G+   A  L   + E   +  +++
Sbjct: 402 EAFELLSWMRMEGPKPTEFALASVLSACGNMAILEHGKQLHAYVLSIGL-EHTAMVLSAL 460

Query: 111 VVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEME----ERNV 166
           +    + G + EA ++F++    +++SW AMI GY E     E I LFE++       + 
Sbjct: 461 INMYCKCGSIEEASRIFDAAENDDIVSWTAMINGYAEHGYSREVIDLFEKIPRVGLRPDS 520

Query: 167 VTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGI 226
           VT+  ++S    AG V+ G+  F  M +K  +S +                         
Sbjct: 521 VTFIGVLSACSHAGLVDLGFHYFNAMSKKYQISPSK------------------------ 556

Query: 227 CDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPV-RDEISWTSMI 273
                    +    MI+   R GRL +A+++ + +P  RD++ W++++
Sbjct: 557 ---------EHYGCMIDLLCRAGRLSDAEHMIEAMPFHRDDVVWSTLL 595


>gi|297738694|emb|CBI27939.3| unnamed protein product [Vitis vinifera]
          Length = 764

 Score =  305 bits (782), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 200/644 (31%), Positives = 322/644 (50%), Gaps = 65/644 (10%)

Query: 13  HLTSSITK-YSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPER 71
           HL SS+   Y K   +  A+ + + MP ++V  +N  LS       L EA +LF  M   
Sbjct: 25  HLWSSLVNVYVKCESLQCARQVLEEMPIQDVQQWNQKLSSANSPYPLQEAVQLFYLMRHT 84

Query: 72  ----NVVSWTAMICGLADAG--------RVCEARKLFEEMPERNVVSWNSMVVGLIRNGE 119
               N   + ++I   A  G          C  +  FE     +++  N+ V   ++   
Sbjct: 85  RIRLNQFIFASLISAAASLGDNHYGESIHACVCKYGFES----DILISNAFVTMYMKTQS 140

Query: 120 LNEARKVFNSMPIKNVISWNAMIAGY--VECCMMGEAIV--LFEEMEERNVVT------- 168
           +    + F +M I+N+ S N +++G+   E C  G  I+  L  E  E N+ T       
Sbjct: 141 VENGWQFFKAMMIENLASRNNLLSGFCDTETCDQGPRILIQLLVEGFEPNMYTFISILKT 200

Query: 169 ----------------------------WTSMISGYCRAGEVEEGYCLFRRMPRKNVVSW 200
                                       W S+++ Y + G       +F  +P ++VVSW
Sbjct: 201 CASKGDLNEGKAIHGQVIKSGINPDSHLWNSLVNVYAKCGSANYACKVFGEIPERDVVSW 260

Query: 201 TAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCN----VQSCNSMINGYIRFGRLEEAQN 256
           TA+I GF   G+    L +F +M     N N       ++SC+S+ +  +  G+   AQ 
Sbjct: 261 TALITGFVAEGY-GSGLRIFNQMLAEGFNPNMYTFISILRSCSSLSD--VDLGKQVHAQI 317

Query: 257 LFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEA 316
           + +++   D +  T+++D Y     + +A  +F+ +  RD  AWT +++G  Q+    +A
Sbjct: 318 VKNSLDGNDFVG-TALVDMYAKNRFLEDAETIFNRLIKRDLFAWTVIVAGYAQDGQGEKA 376

Query: 317 TYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISM 376
              F++M+  GV P   T +         A +D GRQ+H + +K     D+ + + L+ M
Sbjct: 377 VKCFIQMQREGVKPNEFTLASSLSGCSRIATLDSGRQLHSMAIKAGQSGDMFVASALVDM 436

Query: 377 YAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTF 436
           YAKCG +++A  +F  +VSRD VSWN+++ G+S HG   + LK FE+ML+ GT P+ VTF
Sbjct: 437 YAKCGCVEDAEVVFDGLVSRDTVSWNTIICGYSQHGQGGKALKAFEAMLDEGTVPDEVTF 496

Query: 437 LGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLP 496
           +G+LSACSH GL+  G + FN++  +Y I P  EHY  M+++LGRAGK  E E F+  + 
Sbjct: 497 IGVLSACSHMGLIEEGKKHFNSLSKIYGITPTIEHYACMVDILGRAGKFHEVESFIEEMK 556

Query: 497 FEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEH 556
              +  IW  +LGAC    GN E  E AA +L EL+P     +++L N++AA G   +  
Sbjct: 557 LTSNVLIWETVLGACKM-HGNIEFGERAAMKLFELEPEIDSNYILLSNMFAAKGMWDDVT 615

Query: 557 KLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEILL 600
            +R  M  +GV+K PGCSW+  NG + +FLS D    ++ EI L
Sbjct: 616 NVRALMSTRGVKKEPGCSWVEVNGQVHVFLSHDGSHPKIREIHL 659



 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 62/244 (25%), Positives = 108/244 (44%), Gaps = 2/244 (0%)

Query: 265 DEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMR 324
           D   W+S+++ Y+    +  A  +   MP +D   W   +S         EA  LF  MR
Sbjct: 23  DSHLWSSLVNVYVKCESLQCARQVLEEMPIQDVQQWNQKLSSANSPYPLQEAVQLFYLMR 82

Query: 325 AHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVID 384
              +      F+ L  AA +  +   G  IH  + K   ESD+++ N  ++MY K   ++
Sbjct: 83  HTRIRLNQFIFASLISAAASLGDNHYGESIHACVCKYGFESDILISNAFVTMYMKTQSVE 142

Query: 385 NAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACS 444
           N +  F  M+  +L S N+++ GF      ++  ++   +L  G  PN  TF+ IL  C+
Sbjct: 143 NGWQFFKAMMIENLASRNNLLSGFCDTETCDQGPRILIQLLVEGFEPNMYTFISILKTCA 202

Query: 445 HAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIW 504
             G ++ G  +   +     I P    + S++N+  + G    A +    +P E D   W
Sbjct: 203 SKGDLNEGKAIHGQVIKS-GINPDSHLWNSLVNVYAKCGSANYACKVFGEIP-ERDVVSW 260

Query: 505 GALL 508
            AL+
Sbjct: 261 TALI 264


>gi|357511423|ref|XP_003626000.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355501015|gb|AES82218.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 607

 Score =  305 bits (782), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 187/536 (34%), Positives = 293/536 (54%), Gaps = 33/536 (6%)

Query: 79  MICGLADAGRVCEARKLFEE-MPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVIS 137
           MI    D   V +A KL +E +   N+VSWN ++   +++ ++     +F+ MP+K+ +S
Sbjct: 14  MINTYIDNNNVKQAHKLLDENLLSCNIVSWNMVMTAYLQHNQIGPVHDLFDKMPLKDAVS 73

Query: 138 WNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRK-- 195
           WN M++G+            F +M    VV     IS   RA    E   L R++     
Sbjct: 74  WNIMLSGFQRTRNSEGLYRCFLQMGRAGVVPNDYTISTLLRAVISTELDVLVRQVHALAF 133

Query: 196 ------NVVSWTAMIGGFAWNGFHKESLL--LF--IEMKGICDNGNNCNVQSCNSMINGY 245
                 NV   +++I  +A  G  +E  L   F  I MK         +V S N++++ Y
Sbjct: 134 HLGHYLNVFVGSSLIRAYA--GLKEEEALGRAFNDISMK---------DVTSWNALVSSY 182

Query: 246 IRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMIS 305
           +  G+  +AQ  FD +P R+ ISWT++++GY+   QV+ A  +F +M +R+ V+WTAMIS
Sbjct: 183 MELGKFVDAQTAFDQMPQRNIISWTTLVNGYVKNKQVNKARSVFDDMSERNVVSWTAMIS 242

Query: 306 GLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESES 365
           G VQN+ FV+A  LF+ M      P + TFS +  A   ++++ +G Q+H  ++K+   +
Sbjct: 243 GYVQNKRFVDALKLFVLMFKTETRPNHFTFSSVLDACAGSSSLIMGLQLHPCIIKSGIAN 302

Query: 366 DLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESML 425
           D+I    L+ MYAKCG +D A+ +F ++  ++LVSWN+++ G++ HGLA   L+ F+ M 
Sbjct: 303 DVIWLTSLVDMYAKCGDMDAAFGVFESIRDKNLVSWNAIIGGYASHGLATRALEEFDRMK 362

Query: 426 ESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKI 485
             GT P+ VTF+ +LSAC HAGLV  G + F  M   Y IQ   EHY  M++L GRAG+ 
Sbjct: 363 VVGT-PDEVTFVNVLSACVHAGLVEEGEKHFTDMLTKYGIQAEMEHYSCMVDLYGRAGRF 421

Query: 486 KEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNI 545
            EAE  +  +PFEPD  +WGALL ACG    N E+ E+AA+R+  L+  +  ++ VL  I
Sbjct: 422 DEAENLIKNMPFEPDVVLWGALLAACGL-HSNLELGEYAAERIRRLESSHPVSYSVLSKI 480

Query: 546 YAASGRHVEEHKLRMDMGLKGVRK-VPGCSWLMRNGGIQMFLSGDKIPAQVAEILL 600
               G     ++LR  M  +G++K  PG      +     F   D I  ++  IL+
Sbjct: 481 QGEKGVWSSVNELRDTMKERGIKKQTPG------DKNCAQFSKLDSIKTKIEFILI 530



 Score =  156 bits (395), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 147/611 (24%), Positives = 254/611 (41%), Gaps = 122/611 (19%)

Query: 11  VVHLTSSITKYSKRGFIDE--AKALFQLMPQR----NVVSYNAMLSGFLQNGRLSEARRL 64
            V +T+    Y    +ID    K   +L+ +     N+VS+N +++ +LQ+ ++     L
Sbjct: 3   TVTITTPQLNYMINTYIDNNNVKQAHKLLDENLLSCNIVSWNMVMTAYLQHNQIGPVHDL 62

Query: 65  FEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIR---NGELN 121
           F++MP ++ VSW  M+ G           + F +M    VV  +  +  L+R   + EL+
Sbjct: 63  FDKMPLKDAVSWNIMLSGFQRTRNSEGLYRCFLQMGRAGVVPNDYTISTLLRAVISTELD 122

Query: 122 -----------------------------------EAR-KVFNSMPIKNVISWNAMIAGY 145
                                              EA  + FN + +K+V SWNA+++ Y
Sbjct: 123 VLVRQVHALAFHLGHYLNVFVGSSLIRAYAGLKEEEALGRAFNDISMKDVTSWNALVSSY 182

Query: 146 VECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIG 205
           +E     +A   F++M +RN+++WT++++GY +  +V +   +F  M  +NVVSWTAMI 
Sbjct: 183 MELGKFVDAQTAFDQMPQRNIISWTTLVNGYVKNKQVNKARSVFDDMSERNVVSWTAMIS 242

Query: 206 GFAWNGFHKESLLLFIEMKGICDNGNNCNVQSC-------NSMINGYIRFGRLEEAQNLF 258
           G+  N    ++L LF+ M       N+    S        +S+I G      L+    + 
Sbjct: 243 GYVQNKRFVDALKLFVLMFKTETRPNHFTFSSVLDACAGSSSLIMG------LQLHPCII 296

Query: 259 DTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATY 318
            +    D I  TS++D Y   G +  A+ +F ++ D++ V+W A+I G   + L   A  
Sbjct: 297 KSGIANDVIWLTSLVDMYAKCGDMDAAFGVFESIRDKNLVSWNAIIGGYASHGLATRALE 356

Query: 319 LFMEMRAHGVPPLNATFSVLFGAAGATANIDLG-RQIHCVLMKTESESDLILENCLISMY 377
            F  M+  G P    TF  +  A      ++ G +    +L K   ++++   +C++ +Y
Sbjct: 357 EFDRMKVVGTPD-EVTFVNVLSACVHAGLVEEGEKHFTDMLTKYGIQAEMEHYSCMVDLY 415

Query: 378 AKCGVIDNAYNIFSNM-VSRDLVSWNSMVMGFSHHG------LANETLKVFESMLESGTH 430
            + G  D A N+  NM    D+V W +++     H        A E ++  ES     +H
Sbjct: 416 GRAGRFDEAENLIKNMPFEPDVVLWGALLAACGLHSNLELGEYAAERIRRLES-----SH 470

Query: 431 PNSVTFLGILSACSHAGLVSRGWELFNAMFD--VYKIQPGPEHYVSMINLLGRAGKIK-- 486
           P S + L  +      G+ S   EL + M +  + K  PG ++      L     KI+  
Sbjct: 471 PVSYSVLSKIQG--EKGVWSSVNELRDTMKERGIKKQTPGDKNCAQFSKLDSIKTKIEFI 528

Query: 487 ------------------------------------------EAEEFVL--RLPFEPDHR 502
                                                      A  FVL   + FEPD  
Sbjct: 529 LIASNPFKNSPLHGNDYIKAYMCKGNLFLSYIWTYIDGILEVVATSFVLIKNMSFEPDVP 588

Query: 503 IWGALLGACGF 513
           +W ALL  CG 
Sbjct: 589 LWDALLSTCGL 599



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 71/279 (25%), Positives = 131/279 (46%), Gaps = 45/279 (16%)

Query: 7   PKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFE 66
           P+  ++  T+ +  Y K   +++A+++F  M +RNVVS+ AM+SG++QN R  +A +LF 
Sbjct: 199 PQRNIISWTTLVNGYVKNKQVNKARSVFDDMSERNVVSWTAMISGYVQNKRFVDALKLFV 258

Query: 67  EM----PERNVVSWTAMICGLADAGRVCEARKL----FEEMPERNVVSWNSMVVGLIRNG 118
            M       N  ++++++   A +  +    +L     +     +V+   S+V    + G
Sbjct: 259 LMFKTETRPNHFTFSSVLDACAGSSSLIMGLQLHPCIIKSGIANDVIWLTSLVDMYAKCG 318

Query: 119 ELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEME---ERNVVTWTSMISG 175
           +++ A  VF S+  KN++SWNA+I GY    +   A+  F+ M+     + VT+ +++S 
Sbjct: 319 DMDAAFGVFESIRDKNLVSWNAIIGGYASHGLATRALEEFDRMKVVGTPDEVTFVNVLSA 378

Query: 176 YCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNV 235
              AG VEEG   F  M  K                                  G    +
Sbjct: 379 CVHAGLVEEGEKHFTDMLTK---------------------------------YGIQAEM 405

Query: 236 QSCNSMINGYIRFGRLEEAQNLFDTVPVR-DEISWTSMI 273
           +  + M++ Y R GR +EA+NL   +P   D + W +++
Sbjct: 406 EHYSCMVDLYGRAGRFDEAENLIKNMPFEPDVVLWGALL 444


>gi|302780000|ref|XP_002971775.1| hypothetical protein SELMODRAFT_60139 [Selaginella moellendorffii]
 gi|300160907|gb|EFJ27524.1| hypothetical protein SELMODRAFT_60139 [Selaginella moellendorffii]
          Length = 516

 Score =  305 bits (782), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 171/511 (33%), Positives = 283/511 (55%), Gaps = 14/511 (2%)

Query: 44  SYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERN 103
           S+N +++  +QN  + E++ LF+ MPER+ ++W +++   A  G + EA  LF  MPER+
Sbjct: 1   SWNIIITACIQNNAVGESKGLFDRMPERDTITWNSLLSAYAQRGHLEEANDLFYMMPERD 60

Query: 104 VVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEE 163
            +SWN+++     +  L+ A+++++ MP  + +SW+ M+  Y     + +   LF+ M E
Sbjct: 61  YMSWNTLIQASA-SSNLDLAQEIYHYMPEHSHVSWSVMLTAYANFGHLDKTRSLFDSMPE 119

Query: 164 RNVVTWTSMISGYCRAGEVEEGYC-LFRRMPRKNVVSWTAMIGGFA-WNGFHKESLLLFI 221
           RN+++WT+M +GY + G ++E Y  +F  MP ++V SWTAMI  +  ++  HK       
Sbjct: 120 RNLISWTAMAAGYAQNGYLQESYSEIFSTMPERDVFSWTAMITVYGEFDDPHKA------ 173

Query: 222 EMKGICDNGNNCNVQSCNSMING-YIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVG 280
             +   D   + NV S ++M    Y   G LE A+  F+ +P RD +SW S+I  +   G
Sbjct: 174 --RRCFDLMPHKNVVSWSAMFQAAYAHNGHLESAKIAFERMPSRDVVSWNSIIAFFSQKG 231

Query: 281 QVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFG 340
           ++  A  LFH MP+ +  AW  MI    Q+     A  +F  M  HGV P + T+  +F 
Sbjct: 232 KLEEAKDLFHLMPEPNTAAWNVMIQAHAQSGHLDLAMDVFRLMDLHGVSPDSVTYIAIFD 291

Query: 341 AAGATANIDLGRQ-IHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLV 399
           A    AN + G   I  ++     +  + + N  ++MY + G+   A+++F  M  RD V
Sbjct: 292 ACSRIANAEEGSAFIASIVHPGILQDSVAVGNAALTMYGRSGLAAGAWSVFQQMPVRDSV 351

Query: 400 SWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAM 459
           SWN+M+  F+ +G     L VF +M   G  P+ +TF+ +LSACSHAGL+ R    F+++
Sbjct: 352 SWNAMLTAFARNGHGEAALDVFLAMELEGLVPDIITFVNVLSACSHAGLLHRARGYFHSI 411

Query: 460 FDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAE 519
              Y + P  +HYV + +LL R+G++ EAEE V  +PFEP++  W ALLGAC    G+  
Sbjct: 412 SCDYGLTPIYDHYVCLTDLLARSGRLVEAEELVNSMPFEPNYEAWMALLGACR-SHGDVR 470

Query: 520 IAEHAAKRLLELDPLNAPAHVVLCNIYAASG 550
               AA   ++        +V+L ++YA +G
Sbjct: 471 RGNRAAGFFVQAGVDAESPYVLLSHLYAEAG 501



 Score =  179 bits (455), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 122/453 (26%), Positives = 212/453 (46%), Gaps = 58/453 (12%)

Query: 7   PKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFE 66
           P+   +   S ++ Y++RG ++EA  LF +MP+R+ +S+N ++     +  L  A+ ++ 
Sbjct: 26  PERDTITWNSLLSAYAQRGHLEEANDLFYMMPERDYMSWNTLIQA-SASSNLDLAQEIYH 84

Query: 67  EMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEA-RK 125
            MPE + VSW+ M+   A+ G + + R LF+ MPERN++SW +M  G  +NG L E+  +
Sbjct: 85  YMPEHSHVSWSVMLTAYANFGHLDKTRSLFDSMPERNLISWTAMAAGYAQNGYLQESYSE 144

Query: 126 VFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMI-SGYCRAGEVEE 184
           +F++MP ++V SW AMI  Y E     +A   F+ M  +NVV+W++M  + Y   G +E 
Sbjct: 145 IFSTMPERDVFSWTAMITVYGEFDDPHKARRCFDLMPHKNVVSWSAMFQAAYAHNGHLES 204

Query: 185 GYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMING 244
               F RMP ++VVSW ++I  F+  G  +E+  LF  M          N  + N MI  
Sbjct: 205 AKIAFERMPSRDVVSWNSIIAFFSQKGKLEEAKDLFHLMP-------EPNTAAWNVMIQA 257

Query: 245 YIRFGRLEEAQNLFDTVPVR----DEISWTSMIDG------------------------- 275
           + + G L+ A ++F  + +     D +++ ++ D                          
Sbjct: 258 HAQSGHLDLAMDVFRLMDLHGVSPDSVTYIAIFDACSRIANAEEGSAFIASIVHPGILQD 317

Query: 276 -----------YLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMR 324
                      Y   G  + A+ +F  MP RD+V+W AM++   +N     A  +F+ M 
Sbjct: 318 SVAVGNAALTMYGRSGLAAGAWSVFQQMPVRDSVSWNAMLTAFARNGHGEAALDVFLAME 377

Query: 325 AHGVPPLNATFSVLFGAAGATANIDLGR----QIHCVLMKTESESDLILENCLISMYAKC 380
             G+ P   TF  +  A      +   R     I C    T      +   CL  + A+ 
Sbjct: 378 LEGLVPDIITFVNVLSACSHAGLLHRARGYFHSISCDYGLTPIYDHYV---CLTDLLARS 434

Query: 381 GVIDNAYNIFSNM-VSRDLVSWNSMVMGFSHHG 412
           G +  A  + ++M    +  +W +++     HG
Sbjct: 435 GRLVEAEELVNSMPFEPNYEAWMALLGACRSHG 467


>gi|225445812|ref|XP_002275298.1| PREDICTED: pentatricopeptide repeat-containing protein At4g30700
           [Vitis vinifera]
          Length = 781

 Score =  305 bits (782), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 197/638 (30%), Positives = 311/638 (48%), Gaps = 55/638 (8%)

Query: 11  VVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEM-- 68
           +V +T    K S    ID+A  LF  +P  ++  YN ++  F  N   S A  L+  +  
Sbjct: 42  LVTVTKLTHKLSHLKAIDQASLLFSTIPNPDLFLYNVLIRAFSLNNSPSSAVSLYTHLRK 101

Query: 69  -----PERNVVSW------------------------------TAMICGLADAGRVCEAR 93
                P+    ++                              +A++       RV  AR
Sbjct: 102 STPLEPDNFTYAFVISGASSLGLGLLLHAHSIVAGFGSDLFVGSAIVACYFKFSRVAAAR 161

Query: 94  KLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWN-----AMIAGYVE- 147
           K+F+ M ER+ V WN+MV GL++N   +EA  +F  M +K  I ++     A++ G  E 
Sbjct: 162 KVFDGMLERDTVLWNTMVSGLVKNSCFDEAILIFGDM-VKGGIGFDSTTVAAVLPGVAEL 220

Query: 148 ---CCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMI 204
                 MG   +  +     +    T +   Y + GE+E    LF ++ + ++VS+ AMI
Sbjct: 221 QDLALGMGIQCLAMKVGFHSHAYVITGLACLYSKCGEIETARLLFGQIGQPDLVSYNAMI 280

Query: 205 GGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLF----DT 260
            G+  N   + S+ LF E+     +G   N  S   +I  +  FG L   + +      +
Sbjct: 281 SGYTCNNETESSVRLFKEL---LVSGEKVNSSSIVGLIPVFFPFGHLHLTRCIHGFCTKS 337

Query: 261 VPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLF 320
             V +    T++   Y  + ++ +A  LF    ++   +W AMISG  QN L  +A  LF
Sbjct: 338 GVVSNSSVSTALTTVYSRLNEIESARLLFDESSEKSLASWNAMISGYAQNGLTEKAISLF 397

Query: 321 MEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKC 380
            EM+   V P   T + +  A      + LG+ +H ++ +   ES++ +   LI MYAKC
Sbjct: 398 QEMQKCEVRPNPVTVTSILSACAQLGALSLGKWVHDLINRESFESNIFVSTALIDMYAKC 457

Query: 381 GVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGIL 440
           G I  A  +FS M  ++ V+WN+M+ G+  HG  +E L +F  ML S   P  VTFL +L
Sbjct: 458 GSITEAQRLFSMMPEKNAVTWNAMISGYGLHGYGHEALNLFNEMLHSRVSPTGVTFLSVL 517

Query: 441 SACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPD 500
            ACSHAGLV  G E+F +M   +  +P PEHY  M++LLGRAG + +A +F+ ++P EP 
Sbjct: 518 YACSHAGLVREGDEIFRSMVHDHGFEPLPEHYACMVDLLGRAGNLDKALDFIRKMPVEPG 577

Query: 501 HRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRM 560
             +WGALLGAC     +A +A  A+ +L ELDP N   +V+L NIY+A   + E   +R 
Sbjct: 578 PPVWGALLGAC-MIHKDANLARLASDKLFELDPQNVGYYVLLSNIYSAGQNYPEAASVRG 636

Query: 561 DMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
            +  + + K PGC+ +     + +F SGD+   Q   I
Sbjct: 637 VVKRRKLAKTPGCTLIEVANTLHIFTSGDQSHPQATAI 674



 Score = 96.3 bits (238), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 65/281 (23%), Positives = 127/281 (45%), Gaps = 11/281 (3%)

Query: 165 NVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMK 224
           ++VT T +         +++   LF  +P  ++  +  +I  F+ N     ++ L+  ++
Sbjct: 41  DLVTVTKLTHKLSHLKAIDQASLLFSTIPNPDLFLYNVLIRAFSLNNSPSSAVSLYTHLR 100

Query: 225 GICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPV-----RDEISWTSMIDGYLSV 279
                  +  ++  N      I          L     +      D    ++++  Y   
Sbjct: 101 ------KSTPLEPDNFTYAFVISGASSLGLGLLLHAHSIVAGFGSDLFVGSAIVACYFKF 154

Query: 280 GQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLF 339
            +V+ A  +F  M +RD V W  M+SGLV+N  F EA  +F +M   G+   + T + + 
Sbjct: 155 SRVAAARKVFDGMLERDTVLWNTMVSGLVKNSCFDEAILIFGDMVKGGIGFDSTTVAAVL 214

Query: 340 GAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLV 399
                  ++ LG  I C+ MK    S   +   L  +Y+KCG I+ A  +F  +   DLV
Sbjct: 215 PGVAELQDLALGMGIQCLAMKVGFHSHAYVITGLACLYSKCGEIETARLLFGQIGQPDLV 274

Query: 400 SWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGIL 440
           S+N+M+ G++ +     ++++F+ +L SG   NS + +G++
Sbjct: 275 SYNAMISGYTCNNETESSVRLFKELLVSGEKVNSSSIVGLI 315


>gi|255558480|ref|XP_002520265.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223540484|gb|EEF42051.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 681

 Score =  305 bits (781), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 185/602 (30%), Positives = 302/602 (50%), Gaps = 46/602 (7%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWT 77
           I  Y + G  + +  LF LMPQ+N  S+N ++SGF + G L  A++LF EMP RN V+W 
Sbjct: 80  IEGYMRVGDKERSLKLFDLMPQKNDYSWNVVISGFAKAGELDVAKKLFNEMPRRNGVAWN 139

Query: 78  AMICGLADAGRVCEARKLFEEMPER-------NVVSWNSMV-----VGLIRNGELNEARK 125
           +MI G A  G   EA  LF+E+          +     S++     +G I  G+   AR 
Sbjct: 140 SMIHGYARNGFAREAVGLFKELNSNPLEKSCGDTFVLASVIGACADLGAIEYGKQVHARI 199

Query: 126 VFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEG 185
           + + + + +V+  +++I  Y +C  +  A  + + M+E +  + +++I GY   G + + 
Sbjct: 200 LMDDVELDSVL-ISSLINLYAKCGHLDTANYVLKMMDEVDDFSLSALIMGYANCGRMSDA 258

Query: 186 YCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKG-------------------- 225
             +FR       V W ++I G+  N    ++  L  EMK                     
Sbjct: 259 VRIFRTKSNPCFVVWNSLISGYVNNHEEMKAFALVNEMKNNRVQVDSSTITVILSACSST 318

Query: 226 ------------ICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMI 273
                       +C  G   +V   ++ I+ Y +     +A  LF  +   D +   SMI
Sbjct: 319 GNAQYAKQMHGYVCKVGLIDSVIVASAFIDAYSKCRNPNDACKLFSELKAYDTVLLNSMI 378

Query: 274 DGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNA 333
             Y + G++ +A  +F  MP +  ++W ++I GL QN   +EA  +F +M    +     
Sbjct: 379 TAYCNCGRIRDAKNIFETMPSKSLISWNSIIVGLAQNAYPLEALDVFGKMNKLDLRMDRF 438

Query: 334 TFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNM 393
           + + +  A    ++++LG Q+    + T  ESD  +   L+  Y KCG I+N   +F +M
Sbjct: 439 SLASVISACACISSLELGEQVFARAIITGLESDQAVSTSLVDFYCKCGFIENGRKLFDSM 498

Query: 394 VSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGW 453
           +  D VSWNSM+MG++ +G   ETL +F  M ++G  P  +TF G+LSAC H GLV  G 
Sbjct: 499 IKTDEVSWNSMLMGYATNGYGLETLTLFNEMKQAGLRPTDITFTGVLSACDHCGLVEEGR 558

Query: 454 ELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGF 513
           + FN M   Y I PG EHY  M++L  RAG +KEA   V  +PFE D  +W ++L  C  
Sbjct: 559 KWFNIMKYDYHIDPGIEHYSCMVDLFARAGCLKEALNLVEHMPFEADCSMWSSVLRGC-V 617

Query: 514 CEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGC 573
             G+ ++ +  A+++++L+P ++ A+V L  I+A SG       +R  M  K V+K PG 
Sbjct: 618 AHGDKDLGKKVAQQIIQLNPESSSAYVQLSGIFATSGDWESSALVRKIMTEKQVKKHPGF 677

Query: 574 SW 575
           SW
Sbjct: 678 SW 679



 Score =  188 bits (478), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 136/526 (25%), Positives = 235/526 (44%), Gaps = 80/526 (15%)

Query: 27  IDEAKALFQLMPQRNVVSYNAMLSGFLQN------GRLSEARRLFEEMPERNVVSWTAMI 80
           I + K L  L  ++ +++    L+  L        G +++A  LF+EMPERN  SW  MI
Sbjct: 21  IHQGKQLHLLFLKKGLINATVSLANRLLQMYARCGGTMTDAHNLFDEMPERNCFSWNTMI 80

Query: 81  CGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNA 140
            G    G    + KLF+ MP++N  SWN ++ G  + GEL+ A+K+FN MP +N ++WN+
Sbjct: 81  EGYMRVGDKERSLKLFDLMPQKNDYSWNVVISGFAKAGELDVAKKLFNEMPRRNGVAWNS 140

Query: 141 MIAGYVECCMMGEAIVLFEEMEER-------NVVTWTSMISGYCRAGEVEEGYCLFRRMP 193
           MI GY       EA+ LF+E+          +     S+I      G +E G  +  R+ 
Sbjct: 141 MIHGYARNGFAREAVGLFKELNSNPLEKSCGDTFVLASVIGACADLGAIEYGKQVHARIL 200

Query: 194 RKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEE 253
             +V                 +S+L+                   +S+IN Y + G L+ 
Sbjct: 201 MDDV---------------ELDSVLI-------------------SSLINLYAKCGHLDT 226

Query: 254 AQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELF 313
           A  +   +   D+ S +++I GY + G++S+A  +F    +   V W ++ISG V N   
Sbjct: 227 ANYVLKMMDEVDDFSLSALIMGYANCGRMSDAVRIFRTKSNPCFVVWNSLISGYVNNHEE 286

Query: 314 VEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIH------------------ 355
           ++A  L  EM+ + V   ++T +V+  A  +T N    +Q+H                  
Sbjct: 287 MKAFALVNEMKNNRVQVDSSTITVILSACSSTGNAQYAKQMHGYVCKVGLIDSVIVASAF 346

Query: 356 -------------CVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWN 402
                        C L       D +L N +I+ Y  CG I +A NIF  M S+ L+SWN
Sbjct: 347 IDAYSKCRNPNDACKLFSELKAYDTVLLNSMITAYCNCGRIRDAKNIFETMPSKSLISWN 406

Query: 403 SMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDV 462
           S+++G + +    E L VF  M +     +  +   ++SAC+    +  G ++F A   +
Sbjct: 407 SIIVGLAQNAYPLEALDVFGKMNKLDLRMDRFSLASVISACACISSLELGEQVF-ARAII 465

Query: 463 YKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALL 508
             ++       S+++   + G I+   +    +  + D   W ++L
Sbjct: 466 TGLESDQAVSTSLVDFYCKCGFIENGRKLFDSM-IKTDEVSWNSML 510



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 78/286 (27%), Positives = 132/286 (46%), Gaps = 50/286 (17%)

Query: 11  VVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPE 70
            V L S IT Y   G I +AK +F+ MP ++++S+N+++ G  QN    EA  +F +M +
Sbjct: 371 TVLLNSMITAYCNCGRIRDAKNIFETMPSKSLISWNSIIVGLAQNAYPLEALDVFGKMNK 430

Query: 71  RN----------VVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGEL 120
            +          V+S  A I  L + G    AR +   +     VS  S+V    + G +
Sbjct: 431 LDLRMDRFSLASVISACACISSL-ELGEQVFARAIITGLESDQAVS-TSLVDFYCKCGFI 488

Query: 121 NEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNV----VTWTSMISGY 176
              RK+F+SM   + +SWN+M+ GY       E + LF EM++  +    +T+T ++S  
Sbjct: 489 ENGRKLFDSMIKTDEVSWNSMLMGYATNGYGLETLTLFNEMKQAGLRPTDITFTGVLSAC 548

Query: 177 CRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQ 236
              G VEEG   F      N++ +   I                       D G    ++
Sbjct: 549 DHCGLVEEGRKWF------NIMKYDYHI-----------------------DPG----IE 575

Query: 237 SCNSMINGYIRFGRLEEAQNLFDTVPVRDEIS-WTSMIDGYLSVGQ 281
             + M++ + R G L+EA NL + +P   + S W+S++ G ++ G 
Sbjct: 576 HYSCMVDLFARAGCLKEALNLVEHMPFEADCSMWSSVLRGCVAHGD 621


>gi|225430696|ref|XP_002266026.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g47840 [Vitis vinifera]
          Length = 713

 Score =  305 bits (781), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 195/572 (34%), Positives = 297/572 (51%), Gaps = 61/572 (10%)

Query: 46  NAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVV 105
           +A+L  + +NG++ E RR+F EMP RNVVSWTA+I GL  AG   EA   F EM  R+ V
Sbjct: 155 SALLDMYTKNGKIFEGRRVFHEMPMRNVVSWTAIITGLVRAGYNKEALVYFSEM-WRSRV 213

Query: 106 SWNSMVVGL-----IRNGELNEARKVFNSMPIK--NVISW--NAMIAGYVECCMMGEAIV 156
            ++S    +       +G LN  R++      K  +V S+  N +   Y +C  +   + 
Sbjct: 214 EYDSYTFAIALKACADSGALNYGREIHAQAMKKGFDVSSFVANTLATMYNKCGKLEYGLT 273

Query: 157 LFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNV----VSWTAMIGGFA---- 208
           LFE+M  R+VV+WT++I+   + G+ E     F RM   +V     ++ A+I G A    
Sbjct: 274 LFEKMSMRDVVSWTTIITTLVQMGQEECAVQAFIRMRESDVSPNEYTFAAVISGCANLAR 333

Query: 209 --WNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDE 266
             W G    +L+L +        G   ++   NS++  Y + G+L  +  +F  +  RD 
Sbjct: 334 IEW-GEQLHALILHL--------GLAASLSVENSIMTMYAKCGQLTSSSVIFHEMTRRDI 384

Query: 267 ISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAH 326
           +SW+++I GY   G VS A+ L         ++W                      MR  
Sbjct: 385 VSWSTIIAGYSQGGHVSEAFEL---------LSW----------------------MRME 413

Query: 327 GVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNA 386
           G  P     + +  A G  A ++ G+Q+H  ++    E   ++ + LI+MY KCG I+ A
Sbjct: 414 GPKPTEFALASVLSACGNMAILEHGKQLHAYVLSIGLEHTAMVLSALINMYCKCGSIEEA 473

Query: 387 YNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHA 446
             IF    + D+VSW +M+ G++ HG + E + +FE +   G  P+SVTF+G+LSACSHA
Sbjct: 474 SRIFDAAENDDIVSWTAMINGYAEHGYSREVIDLFEKIPRVGLRPDSVTFIGVLSACSHA 533

Query: 447 GLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGA 506
           GLV  G+  FNAM   Y+I P  EHY  MI+LL RAG++ +AE  +  +PF  D  +W  
Sbjct: 534 GLVDLGFRYFNAMSKKYQISPSKEHYGCMIDLLCRAGRLSDAEHMIEAMPFHRDDVVWST 593

Query: 507 LLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKG 566
           LL AC    G+ E     A+R+L+L+P  A  H+ L NIYA+ G+  E   +R  M  KG
Sbjct: 594 LLRACR-VHGDVERGRRTAERILQLEPNCAGTHITLANIYASKGKWREAADIRKLMKSKG 652

Query: 567 VRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
           V K PG SW+     +  F++GD+   Q  +I
Sbjct: 653 VIKEPGWSWIKVKDLVFAFVAGDRSHPQGEDI 684



 Score =  177 bits (450), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 120/437 (27%), Positives = 201/437 (45%), Gaps = 57/437 (13%)

Query: 98  EMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVL 157
           ++PE N       +  L++ G L  AR++F+ M  K+ ISW  +I+GYV      EA++L
Sbjct: 48  DLPESN-----KQLKELVKTGHLGNARRMFDKMSQKDEISWTTLISGYVNANDSSEALLL 102

Query: 158 FEEMEERN----------------------------------------VVTWTSMISGYC 177
           F+ M   +                                        V   ++++  Y 
Sbjct: 103 FKNMRVESGLRIDPFILSLAHKACGLNSDVNYGELLHGYAVKTGLVNSVFVGSALLDMYT 162

Query: 178 RAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEM--KGICDNGNNCNV 235
           + G++ EG  +F  MP +NVVSWTA+I G    G++KE+L+ F EM    +  +     +
Sbjct: 163 KNGKIFEGRRVFHEMPMRNVVSWTAIITGLVRAGYNKEALVYFSEMWRSRVEYDSYTFAI 222

Query: 236 QSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDR 295
                  +G + +GR   AQ +     V   ++  ++   Y   G++     LF  M  R
Sbjct: 223 ALKACADSGALNYGREIHAQAMKKGFDVSSFVA-NTLATMYNKCGKLEYGLTLFEKMSMR 281

Query: 296 DAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIH 355
           D V+WT +I+ LVQ      A   F+ MR   V P   TF+ +       A I+ G Q+H
Sbjct: 282 DVVSWTTIITTLVQMGQEECAVQAFIRMRESDVSPNEYTFAAVISGCANLARIEWGEQLH 341

Query: 356 CVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLAN 415
            +++     + L +EN +++MYAKCG + ++  IF  M  RD+VSW++++ G+S  G  +
Sbjct: 342 ALILHLGLAASLSVENSIMTMYAKCGQLTSSSVIFHEMTRRDIVSWSTIIAGYSQGGHVS 401

Query: 416 ETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYV-- 473
           E  ++   M   G  P       +LSAC +  ++  G +L       Y +  G EH    
Sbjct: 402 EAFELLSWMRMEGPKPTEFALASVLSACGNMAILEHGKQLH-----AYVLSIGLEHTAMV 456

Query: 474 --SMINLLGRAGKIKEA 488
             ++IN+  + G I+EA
Sbjct: 457 LSALINMYCKCGSIEEA 473



 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 112/501 (22%), Positives = 195/501 (38%), Gaps = 127/501 (25%)

Query: 21  YSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEM----PERNVVSW 76
           Y+K G I E + +F  MP RNVVS+ A+++G ++ G   EA   F EM     E +  ++
Sbjct: 161 YTKNGKIFEGRRVFHEMPMRNVVSWTAIITGLVRAGYNKEALVYFSEMWRSRVEYDSYTF 220

Query: 77  TAMICGLADAGRVCEARK-----------------------------------LFEEMPE 101
              +   AD+G +   R+                                   LFE+M  
Sbjct: 221 AIALKACADSGALNYGREIHAQAMKKGFDVSSFVANTLATMYNKCGKLEYGLTLFEKMSM 280

Query: 102 RNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNV-------------------ISW---- 138
           R+VVSW +++  L++ G+   A + F  M   +V                   I W    
Sbjct: 281 RDVVSWTTIITTLVQMGQEECAVQAFIRMRESDVSPNEYTFAAVISGCANLARIEWGEQL 340

Query: 139 ----------------NAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEV 182
                           N+++  Y +C  +  + V+F EM  R++V+W+++I+GY + G V
Sbjct: 341 HALILHLGLAASLSVENSIMTMYAKCGQLTSSSVIFHEMTRRDIVSWSTIIAGYSQGGHV 400

Query: 183 EEGYCLFRRM----PRKNVVSWTAMIGGFAWNGF--HKESLLLFIEMKGICDNGNNCNVQ 236
            E + L   M    P+    +  +++          H + L  ++   G+          
Sbjct: 401 SEAFELLSWMRMEGPKPTEFALASVLSACGNMAILEHGKQLHAYVLSIGL-----EHTAM 455

Query: 237 SCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRD 296
             +++IN Y + G +EEA  +FD     D +SWT+MI+GY   G       LF  +P   
Sbjct: 456 VLSALINMYCKCGSIEEASRIFDAAENDDIVSWTAMINGYAEHGYSREVIDLFEKIPRV- 514

Query: 297 AVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLG-RQIH 355
                                         G+ P + TF  +  A      +DLG R  +
Sbjct: 515 ------------------------------GLRPDSVTFIGVLSACSHAGLVDLGFRYFN 544

Query: 356 CVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNM-VSRDLVSWNSMVMGFSHHGLA 414
            +  K +         C+I +  + G + +A ++   M   RD V W++++     HG  
Sbjct: 545 AMSKKYQISPSKEHYGCMIDLLCRAGRLSDAEHMIEAMPFHRDDVVWSTLLRACRVHGDV 604

Query: 415 NETLKVFESMLE-----SGTH 430
               +  E +L+     +GTH
Sbjct: 605 ERGRRTAERILQLEPNCAGTH 625



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 78/339 (23%), Positives = 153/339 (45%), Gaps = 56/339 (16%)

Query: 19  TKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNV----V 74
           T Y+K G ++    LF+ M  R+VVS+  +++  +Q G+   A + F  M E +V     
Sbjct: 260 TMYNKCGKLEYGLTLFEKMSMRDVVSWTTIITTLVQMGQEECAVQAFIRMRESDVSPNEY 319

Query: 75  SWTAMICGLADAGRVCEARKLFEEMPERNVVSW----NSMVVGLIRNGELNEARKVFNSM 130
           ++ A+I G A+  R+    +L   +    + +     NS++    + G+L  +  +F+ M
Sbjct: 320 TFAAVISGCANLARIEWGEQLHALILHLGLAASLSVENSIMTMYAKCGQLTSSSVIFHEM 379

Query: 131 PIKNVISWNAMIAGYVECCMMGEAIVLFEEME---------------------------- 162
             ++++SW+ +IAGY +   + EA  L   M                             
Sbjct: 380 TRRDIVSWSTIIAGYSQGGHVSEAFELLSWMRMEGPKPTEFALASVLSACGNMAILEHGK 439

Query: 163 -----------ERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNG 211
                      E   +  +++I+ YC+ G +EE   +F      ++VSWTAMI G+A +G
Sbjct: 440 QLHAYVLSIGLEHTAMVLSALINMYCKCGSIEEASRIFDAAENDDIVSWTAMINGYAEHG 499

Query: 212 FHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEIS--- 268
           + +E + LF ++  +   G   +  +   +++     G ++     F+ +  + +IS   
Sbjct: 500 YSREVIDLFEKIPRV---GLRPDSVTFIGVLSACSHAGLVDLGFRYFNAMSKKYQISPSK 556

Query: 269 --WTSMIDGYLSVGQVSNAYYLFHNMP-DRDAVAWTAMI 304
             +  MID     G++S+A ++   MP  RD V W+ ++
Sbjct: 557 EHYGCMIDLLCRAGRLSDAEHMIEAMPFHRDDVVWSTLL 595



 Score = 78.6 bits (192), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 67/288 (23%), Positives = 130/288 (45%), Gaps = 57/288 (19%)

Query: 9   SLVVHL---------TSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLS 59
           +L++HL          S +T Y+K G +  +  +F  M +R++VS++ +++G+ Q G +S
Sbjct: 342 ALILHLGLAASLSVENSIMTMYAKCGQLTSSSVIFHEMTRRDIVSWSTIIAGYSQGGHVS 401

Query: 60  EARRLFEEM------PERNVVSWTAMICG---LADAGRVCEARKLFEEMPERNVVSWNSM 110
           EA  L   M      P    ++     CG   + + G+   A  L   + E   +  +++
Sbjct: 402 EAFELLSWMRMEGPKPTEFALASVLSACGNMAILEHGKQLHAYVLSIGL-EHTAMVLSAL 460

Query: 111 VVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEME----ERNV 166
           +    + G + EA ++F++    +++SW AMI GY E     E I LFE++       + 
Sbjct: 461 INMYCKCGSIEEASRIFDAAENDDIVSWTAMINGYAEHGYSREVIDLFEKIPRVGLRPDS 520

Query: 167 VTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGI 226
           VT+  ++S    AG V+ G+  F  M +K  +S +                         
Sbjct: 521 VTFIGVLSACSHAGLVDLGFRYFNAMSKKYQISPSK------------------------ 556

Query: 227 CDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPV-RDEISWTSMI 273
                    +    MI+   R GRL +A+++ + +P  RD++ W++++
Sbjct: 557 ---------EHYGCMIDLLCRAGRLSDAEHMIEAMPFHRDDVVWSTLL 595


>gi|359489786|ref|XP_002271725.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Vitis vinifera]
          Length = 852

 Score =  305 bits (781), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 197/581 (33%), Positives = 304/581 (52%), Gaps = 36/581 (6%)

Query: 41  NVVSYNAMLSGFLQNGRLSEARRLFEEMPERNV---VSWTAMICGLADAGRVCEARKLFE 97
           NV   N ++S + + G    AR++F+EM ER V   VSW +++      G    A K+FE
Sbjct: 160 NVFVGNGLVSMYGRCGAWENARQVFDEMRERGVGDLVSWNSIVAAYMQGGDSIRAMKMFE 219

Query: 98  EMPER-----NVVSWNSMVVGLIRNGELNEARKV----FNSMPIKNVISWNAMIAGYVEC 148
            M E      + VS  +++      G  +  ++V      S   ++V   NA++  Y +C
Sbjct: 220 RMTEDLGIRPDAVSLVNVLPACASVGAWSRGKQVHGYALRSGLFEDVFVGNAVVDMYAKC 279

Query: 149 CMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRK----NVVSWTAMI 204
            MM EA  +FE M+ ++VV+W +M++GY + G  ++   LF ++  +    NVV+W+A+I
Sbjct: 280 GMMEEANKVFERMKVKDVVSWNAMVTGYSQIGRFDDALGLFEKIREEKIELNVVTWSAVI 339

Query: 205 GGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQ--------- 255
            G+A  G   E+L +F +M+ +C  G+  NV +  S+++G    G L   +         
Sbjct: 340 AGYAQRGLGFEALDVFRQMR-LC--GSEPNVVTLVSLLSGCALAGTLLHGKETHCHAIKW 396

Query: 256 --NLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMP--DRDAVAWTAMISGLVQNE 311
             NL +  P  D +   ++ID Y        A  +F  +P  DR  V WT +I G  Q+ 
Sbjct: 397 ILNLDENDPGDDLMVINALIDMYSKCKSPKAARAMFDLIPPKDRSVVTWTVLIGGNAQHG 456

Query: 312 LFVEATYLFMEMRAHG--VPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESD-LI 368
              EA  LF +M      V P   T S    A      +  GRQIH  +++   ES  L 
Sbjct: 457 EANEALELFSQMLQPDNFVMPNAFTISCALMACARLGALRFGRQIHAYVLRNRFESAMLF 516

Query: 369 LENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESG 428
           + NCLI MY+K G +D A  +F NM  R+ VSW S++ G+  HG   E L++F  M + G
Sbjct: 517 VANCLIDMYSKSGDVDAARVVFDNMHQRNGVSWTSLMTGYGMHGRGEEALQIFYEMQKVG 576

Query: 429 THPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEA 488
             P+ VTF+ +L ACSH+G+V +G   FN M   + + PG EHY  M++LL RAG++ EA
Sbjct: 577 LVPDGVTFVVVLYACSHSGMVDQGINYFNGMNKDFGVVPGAEHYACMVDLLSRAGRLDEA 636

Query: 489 EEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAA 548
            E +  +P +P   +W ALL AC     N E+ E+AA +LLEL+  N  ++ +L NIYA 
Sbjct: 637 MELIRGMPMKPTPAVWVALLSACR-VYANVELGEYAANQLLELESGNDGSYTLLSNIYAN 695

Query: 549 SGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGD 589
           +    +  ++R  M   G++K PGCSW+    G   F +GD
Sbjct: 696 ARCWKDVARIRYLMKNTGIKKRPGCSWVQGRKGTATFFAGD 736



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 110/404 (27%), Positives = 183/404 (45%), Gaps = 61/404 (15%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPER----NV 73
           +  Y+K G ++EA  +F+ M  ++VVS+NAM++G+ Q GR  +A  LFE++ E     NV
Sbjct: 273 VDMYAKCGMMEEANKVFERMKVKDVVSWNAMVTGYSQIGRFDDALGLFEKIREEKIELNV 332

Query: 74  VSWTAMICGLADAGRVCEARKLFEEM----PERNVVSWNSMVVGLIRNGELNEARKVF-- 127
           V+W+A+I G A  G   EA  +F +M     E NVV+  S++ G    G L   ++    
Sbjct: 333 VTWSAVIAGYAQRGLGFEALDVFRQMRLCGSEPNVVTLVSLLSGCALAGTLLHGKETHCH 392

Query: 128 ---------NSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEM--EERNVVTWTSMISGY 176
                     + P  +++  NA+I  Y +C     A  +F+ +  ++R+VVTWT +I G 
Sbjct: 393 AIKWILNLDENDPGDDLMVINALIDMYSKCKSPKAARAMFDLIPPKDRSVVTWTVLIGGN 452

Query: 177 CRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQ 236
            + GE  E   LF +M + +      M   F                        +C + 
Sbjct: 453 AQHGEANEALELFSQMLQPDNF---VMPNAFTI----------------------SCALM 487

Query: 237 SCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRD 296
           +C  +  G +RFGR   A  L +            +ID Y   G V  A  +F NM  R+
Sbjct: 488 ACARL--GALRFGRQIHAYVLRNRFESAMLFVANCLIDMYSKSGDVDAARVVFDNMHQRN 545

Query: 297 AVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLG----- 351
            V+WT++++G   +    EA  +F EM+  G+ P   TF V+  A   +  +D G     
Sbjct: 546 GVSWTSLMTGYGMHGRGEEALQIFYEMQKVGLVPDGVTFVVVLYACSHSGMVDQGINYFN 605

Query: 352 --RQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNM 393
              +   V+   E  +      C++ + ++ G +D A  +   M
Sbjct: 606 GMNKDFGVVPGAEHYA------CMVDLLSRAGRLDEAMELIRGM 643



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 101/412 (24%), Positives = 173/412 (41%), Gaps = 59/412 (14%)

Query: 103 NVVSWNSMVVGLIRNGELNEARKVFNSM------PIKNVISWNAMIAGYVECCMMGEAI- 155
            V  WN ++   +  G L +  +++  M      P      +     G +     G ++ 
Sbjct: 90  TVFWWNQLIRRSVHLGFLEDVLQLYRRMQRLGWRPDHYTFPFVLKACGEIPSFRCGASVH 149

Query: 156 -VLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNV---VSWTAMIGGFAWNG 211
            V+F    E NV     ++S Y R G  E    +F  M  + V   VSW +++  +   G
Sbjct: 150 AVVFASGFEWNVFVGNGLVSMYGRCGAWENARQVFDEMRERGVGDLVSWNSIVAAYMQGG 209

Query: 212 FHKESLLLFIEMK----------------------GICDNGNNC-----------NVQSC 238
               ++ +F  M                       G    G              +V   
Sbjct: 210 DSIRAMKMFERMTEDLGIRPDAVSLVNVLPACASVGAWSRGKQVHGYALRSGLFEDVFVG 269

Query: 239 NSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDR--- 295
           N++++ Y + G +EEA  +F+ + V+D +SW +M+ GY  +G+  +A  LF  + +    
Sbjct: 270 NAVVDMYAKCGMMEEANKVFERMKVKDVVSWNAMVTGYSQIGRFDDALGLFEKIREEKIE 329

Query: 296 -DAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQI 354
            + V W+A+I+G  Q  L  EA  +F +MR  G  P   T   L         +  G++ 
Sbjct: 330 LNVVTWSAVIAGYAQRGLGFEALDVFRQMRLCGSEPNVVTLVSLLSGCALAGTLLHGKET 389

Query: 355 HCVLMK-------TESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRD--LVSWNSMV 405
           HC  +K        +   DL++ N LI MY+KC     A  +F  +  +D  +V+W  ++
Sbjct: 390 HCHAIKWILNLDENDPGDDLMVINALIDMYSKCKSPKAARAMFDLIPPKDRSVVTWTVLI 449

Query: 406 MGFSHHGLANETLKVFESMLESGTH--PNSVTFLGILSACSHAGLVSRGWEL 455
            G + HG ANE L++F  ML+      PN+ T    L AC+  G +  G ++
Sbjct: 450 GGNAQHGEANEALELFSQMLQPDNFVMPNAFTISCALMACARLGALRFGRQI 501



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 68/249 (27%), Positives = 118/249 (47%), Gaps = 16/249 (6%)

Query: 270 TSMIDGYLSVGQVSNAYYLFHNM-PDRDAVAW-TAMISGLVQNELFVEATYLFMEMRAHG 327
           T +I  YL+    + A  +   + P    V W   +I   V      +   L+  M+  G
Sbjct: 62  THIISMYLTFNSPAKALSVLRRLHPSSHTVFWWNQLIRRSVHLGFLEDVLQLYRRMQRLG 121

Query: 328 VPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAY 387
             P + TF  +  A G   +   G  +H V+  +  E ++ + N L+SMY +CG  +NA 
Sbjct: 122 WRPDHYTFPFVLKACGEIPSFRCGASVHAVVFASGFEWNVFVGNGLVSMYGRCGAWENAR 181

Query: 388 NIFSNMVSR---DLVSWNSMVMGFSHHGLANETLKVFESMLES-GTHPNSVTFLGILSAC 443
            +F  M  R   DLVSWNS+V  +   G +   +K+FE M E  G  P++V+ + +L AC
Sbjct: 182 QVFDEMRERGVGDLVSWNSIVAAYMQGGDSIRAMKMFERMTEDLGIRPDAVSLVNVLPAC 241

Query: 444 SHAGLVSRGWELFNAMFDVYKIQPGPEHYV----SMINLLGRAGKIKEAEEFVLRLPFEP 499
           +  G  SRG ++       Y ++ G    V    +++++  + G ++EA +   R+  + 
Sbjct: 242 ASVGAWSRGKQVHG-----YALRSGLFEDVFVGNAVVDMYAKCGMMEEANKVFERMKVK- 295

Query: 500 DHRIWGALL 508
           D   W A++
Sbjct: 296 DVVSWNAMV 304



 Score = 92.0 bits (227), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 93/366 (25%), Positives = 163/366 (44%), Gaps = 74/366 (20%)

Query: 11  VVHLTSSITKYSKRGFIDEAKALFQLMPQR----NVVSYNAMLSGFLQNGRLSEARRLFE 66
           VV   + +T YS+ G  D+A  LF+ + +     NVV+++A+++G+ Q G   EA  +F 
Sbjct: 297 VVSWNAMVTGYSQIGRFDDALGLFEKIREEKIELNVVTWSAVIAGYAQRGLGFEALDVFR 356

Query: 67  EM----PERNVVSWTAMICGLADAGRV--------------------------------- 89
           +M     E NVV+  +++ G A AG +                                 
Sbjct: 357 QMRLCGSEPNVVTLVSLLSGCALAGTLLHGKETHCHAIKWILNLDENDPGDDLMVINALI 416

Query: 90  -----CE----ARKLFEEMP--ERNVVSWNSMVVGLIRNGELNEARKVFNSM-PIKNVIS 137
                C+    AR +F+ +P  +R+VV+W  ++ G  ++GE NEA ++F+ M    N + 
Sbjct: 417 DMYSKCKSPKAARAMFDLIPPKDRSVVTWTVLIGGNAQHGEANEALELFSQMLQPDNFVM 476

Query: 138 WNAMI--AGYVECCMMG--------EAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYC 187
            NA       + C  +G         A VL    E   +     +I  Y ++G+V+    
Sbjct: 477 PNAFTISCALMACARLGALRFGRQIHAYVLRNRFESAMLFVANCLIDMYSKSGDVDAARV 536

Query: 188 LFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMK--GICDNGNNCNVQ----SCNSM 241
           +F  M ++N VSWT+++ G+  +G  +E+L +F EM+  G+  +G    V     S + M
Sbjct: 537 VFDNMHQRNGVSWTSLMTGYGMHGRGEEALQIFYEMQKVGLVPDGVTFVVVLYACSHSGM 596

Query: 242 INGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVA-W 300
           ++  I +         F  VP  +   +  M+D     G++  A  L   MP +   A W
Sbjct: 597 VDQGINY--FNGMNKDFGVVPGAEH--YACMVDLLSRAGRLDEAMELIRGMPMKPTPAVW 652

Query: 301 TAMISG 306
            A++S 
Sbjct: 653 VALLSA 658



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 69/289 (23%), Positives = 124/289 (42%), Gaps = 51/289 (17%)

Query: 3   ERNHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMP--QRNVVSYNAMLSGFLQNGRLSE 60
           + N P   ++ + + I  YSK      A+A+F L+P   R+VV++  ++ G  Q+G  +E
Sbjct: 401 DENDPGDDLMVINALIDMYSKCKSPKAARAMFDLIPPKDRSVVTWTVLIGGNAQHGEANE 460

Query: 61  ARRLFEE--------MPERNVVSWTAMICGLADA---GRVCEARKLFEEMPERNVVSWNS 109
           A  LF +        MP    +S   M C    A   GR   A  L        +   N 
Sbjct: 461 ALELFSQMLQPDNFVMPNAFTISCALMACARLGALRFGRQIHAYVLRNRFESAMLFVANC 520

Query: 110 MVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNV--- 166
           ++    ++G+++ AR VF++M  +N +SW +++ GY       EA+ +F EM++  +   
Sbjct: 521 LIDMYSKSGDVDAARVVFDNMHQRNGVSWTSLMTGYGMHGRGEEALQIFYEMQKVGLVPD 580

Query: 167 -VTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKG 225
            VT+  ++     +G V++G   F                    NG +K           
Sbjct: 581 GVTFVVVLYACSHSGMVDQGINYF--------------------NGMNK----------- 609

Query: 226 ICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEIS-WTSMI 273
             D G     +    M++   R GRL+EA  L   +P++   + W +++
Sbjct: 610 --DFGVVPGAEHYACMVDLLSRAGRLDEAMELIRGMPMKPTPAVWVALL 656


>gi|224075493|ref|XP_002304652.1| predicted protein [Populus trichocarpa]
 gi|222842084|gb|EEE79631.1| predicted protein [Populus trichocarpa]
          Length = 820

 Score =  305 bits (781), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 196/620 (31%), Positives = 311/620 (50%), Gaps = 55/620 (8%)

Query: 21  YSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMP----ERNVVSW 76
           Y K   + +A  LF  MP RN VS+  ++ G+ Q  R SEA  LF  +     E N   +
Sbjct: 89  YVKYDSLPDAAKLFDEMPDRNTVSFVTLIQGYSQCLRFSEAIGLFSRLQGEGHELNPFVF 148

Query: 77  TAMI-------------------------------CGLADAGRVCE----ARKLFEEMPE 101
           + ++                                 L D   VC     AR++F+ +  
Sbjct: 149 STVLKLLVSAEWAKLGFSVHACVYKLGFDSDAFVGTALIDCYSVCGYAECARQVFDAIEY 208

Query: 102 RNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCM------MGEAI 155
           +++VSW  MV   + N    E+ K+F+ M I      N   A  ++ C+      +G+A+
Sbjct: 209 KDMVSWTGMVACYVENECFEESLKLFSRMRIVGFKPNNFTFASVLKACVGLEVFNVGKAV 268

Query: 156 --VLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFH 213
               F+      +     +I  Y ++G+V++   +F  MP+ +V+ W+ MI  +A +   
Sbjct: 269 HGCAFKTSYLEELFVGVELIDLYIKSGDVDDALQVFEEMPKDDVIPWSFMIARYAQSEQS 328

Query: 214 KESLLLFIEMKGICDNGNNCNV----QSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISW 269
           +E++ +F  M+      N   +    Q+C S+++  ++ G       +   + +   +S 
Sbjct: 329 EEAIEMFCRMRRGLVLPNQFTLASLLQACASLVD--LQLGNQIHCHVVKVGLDMNVFVS- 385

Query: 270 TSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVP 329
            +++D Y   G++ N+  LF   P+   V+W  +I G VQ     +A  LF +M    V 
Sbjct: 386 NALMDMYAKCGRMENSLQLFSESPNCTDVSWNTVIVGYVQAGNGEKALILFKDMLECQVQ 445

Query: 330 PLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNI 389
               T+S +  A    A ++ G QIH + +KT  + + ++ N LI MYAKCG I +A  +
Sbjct: 446 GTEVTYSSVLRACAGIAALEPGSQIHSLSVKTIYDKNTVVGNALIDMYAKCGNIKDARLV 505

Query: 390 FSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLV 449
           F  +   D VSWN+M+ G+S HGL  E LK FESMLE+   P+ VTF+GILSACS+AGL+
Sbjct: 506 FDMLREHDQVSWNAMISGYSVHGLYGEALKTFESMLETECKPDKVTFVGILSACSNAGLL 565

Query: 450 SRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLG 509
            RG   F +M + Y I+P  EHY  M+ LLGR+G + +A + V  +PFEP   +W ALL 
Sbjct: 566 DRGQAYFKSMVEEYDIEPCAEHYTCMVWLLGRSGHLDKAAKLVHEIPFEPSVMVWRALLS 625

Query: 510 ACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRK 569
           AC     + E+   +A+R+LE++P +   HV+L NIYA + R      +R  M  KG+RK
Sbjct: 626 AC-VIHNDVELGRISAQRVLEIEPEDEATHVLLSNIYANARRWGNVASIRTSMKRKGIRK 684

Query: 570 VPGCSWLMRNGGIQMFLSGD 589
            PG SW+   G +  F  GD
Sbjct: 685 EPGLSWIENQGRVHYFSVGD 704



 Score =  161 bits (408), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 123/497 (24%), Positives = 207/497 (41%), Gaps = 85/497 (17%)

Query: 92  ARKLFEEMPERNVVSWNSMVVGLIRNGE-------------------------------- 119
           A++     PE N   + S++   IRNG+                                
Sbjct: 32  AQRTSHSSPEFNTYIYGSLLQSCIRNGDCATGKYLHCEIIKKGNCLDLFANNILLNFYVK 91

Query: 120 ---LNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEME-------------- 162
              L +A K+F+ MP +N +S+  +I GY +C    EAI LF  ++              
Sbjct: 92  YDSLPDAAKLFDEMPDRNTVSFVTLIQGYSQCLRFSEAIGLFSRLQGEGHELNPFVFSTV 151

Query: 163 -------------------------ERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNV 197
                                    + +    T++I  Y   G  E    +F  +  K++
Sbjct: 152 LKLLVSAEWAKLGFSVHACVYKLGFDSDAFVGTALIDCYSVCGYAECARQVFDAIEYKDM 211

Query: 198 VSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNL 257
           VSWT M+  +  N   +ESL LF  M+ +    NN    S      G   F   +     
Sbjct: 212 VSWTGMVACYVENECFEESLKLFSRMRIVGFKPNNFTFASVLKACVGLEVFNVGKAVHGC 271

Query: 258 -FDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEA 316
            F T  + +      +ID Y+  G V +A  +F  MP  D + W+ MI+   Q+E   EA
Sbjct: 272 AFKTSYLEELFVGVELIDLYIKSGDVDDALQVFEEMPKDDVIPWSFMIARYAQSEQSEEA 331

Query: 317 TYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISM 376
             +F  MR   V P   T + L  A  +  ++ LG QIHC ++K   + ++ + N L+ M
Sbjct: 332 IEMFCRMRRGLVLPNQFTLASLLQACASLVDLQLGNQIHCHVVKVGLDMNVFVSNALMDM 391

Query: 377 YAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTF 436
           YAKCG ++N+  +FS   +   VSWN++++G+   G   + L +F+ MLE       VT+
Sbjct: 392 YAKCGRMENSLQLFSESPNCTDVSWNTVIVGYVQAGNGEKALILFKDMLECQVQGTEVTY 451

Query: 437 LGILSACSHAGLVSRGWELFN----AMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFV 492
             +L AC+    +  G ++ +     ++D   +        ++I++  + G IK+A   V
Sbjct: 452 SSVLRACAGIAALEPGSQIHSLSVKTIYDKNTVVGN-----ALIDMYAKCGNIKDA-RLV 505

Query: 493 LRLPFEPDHRIWGALLG 509
             +  E D   W A++ 
Sbjct: 506 FDMLREHDQVSWNAMIS 522



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 77/345 (22%), Positives = 141/345 (40%), Gaps = 58/345 (16%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMP-------- 69
           I  Y K G +D+A  +F+ MP+ +V+ ++ M++ + Q+ +  EA  +F  M         
Sbjct: 288 IDLYIKSGDVDDALQVFEEMPKDDVIPWSFMIARYAQSEQSEEAIEMFCRMRRGLVLPNQ 347

Query: 70  -------------------------------ERNVVSWTAMICGLADAGRVCEARKLFEE 98
                                          + NV    A++   A  GR+  + +LF E
Sbjct: 348 FTLASLLQACASLVDLQLGNQIHCHVVKVGLDMNVFVSNALMDMYAKCGRMENSLQLFSE 407

Query: 99  MPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAI--- 155
            P    VSWN+++VG ++ G   +A  +F  M    V       +  +  C    A+   
Sbjct: 408 SPNCTDVSWNTVIVGYVQAGNGEKALILFKDMLECQVQGTEVTYSSVLRACAGIAALEPG 467

Query: 156 -----VLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWN 210
                +  + + ++N V   ++I  Y + G +++   +F  +   + VSW AMI G++ +
Sbjct: 468 SQIHSLSVKTIYDKNTVVGNALIDMYAKCGNIKDARLVFDMLREHDQVSWNAMISGYSVH 527

Query: 211 GFHKESLLLFIEM-KGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEIS- 268
           G + E+L  F  M +  C       V   ++  N     G L+  Q  F ++    +I  
Sbjct: 528 GLYGEALKTFESMLETECKPDKVTFVGILSACSNA----GLLDRGQAYFKSMVEEYDIEP 583

Query: 269 ----WTSMIDGYLSVGQVSNAYYLFHNMPDRDAV-AWTAMISGLV 308
               +T M+      G +  A  L H +P   +V  W A++S  V
Sbjct: 584 CAEHYTCMVWLLGRSGHLDKAAKLVHEIPFEPSVMVWRALLSACV 628



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 39/158 (24%), Positives = 69/158 (43%), Gaps = 9/158 (5%)

Query: 320 FMEMR-AHGVPPLNA-TFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMY 377
           F+  R +H  P  N   +  L  +     +   G+ +HC ++K  +  DL   N L++ Y
Sbjct: 30  FLAQRTSHSSPEFNTYIYGSLLQSCIRNGDCATGKYLHCEIIKKGNCLDLFANNILLNFY 89

Query: 378 AKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFL 437
            K   + +A  +F  M  R+ VS+ +++ G+S     +E + +F  +   G   N   F 
Sbjct: 90  VKYDSLPDAAKLFDEMPDRNTVSFVTLIQGYSQCLRFSEAIGLFSRLQGEGHELNPFVFS 149

Query: 438 GILSACSHAGLVSRGWEL--FNAMFDVYKIQPGPEHYV 473
            +L       LVS  W    F+    VYK+    + +V
Sbjct: 150 TVLKL-----LVSAEWAKLGFSVHACVYKLGFDSDAFV 182


>gi|9294596|dbj|BAB02877.1| unnamed protein product [Arabidopsis thaliana]
          Length = 695

 Score =  305 bits (781), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 183/562 (32%), Positives = 300/562 (53%), Gaps = 25/562 (4%)

Query: 56  GRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVV----SWNSMV 111
           G +S A +LF ++PE +VV W  MI G +      E  +L+  M +  V     ++  ++
Sbjct: 82  GHVSYAYKLFVKIPEPDVVVWNNMIKGWSKVDCDGEGVRLYLNMLKEGVTPDSHTFPFLL 141

Query: 112 VGLIRNGELNEARKVFNSMPIK-----NVISWNAMIAGYVECCMMGEAIVLFEEMEERNV 166
            GL R+G      K  +   +K     N+   NA++  Y  C +M  A  +F+   + +V
Sbjct: 142 NGLKRDGGALACGKKLHCHVVKFGLGSNLYVQNALVKMYSLCGLMDMARGVFDRRCKEDV 201

Query: 167 VTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGI 226
            +W  MISGY R  E EE   L   M R N+VS T++      +   K      ++ K +
Sbjct: 202 FSWNLMISGYNRMKEYEESIELLVEMER-NLVSPTSVTLLLVLSACSK------VKDKDL 254

Query: 227 C----DNGNNCNVQSC----NSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLS 278
           C    +  + C  +      N+++N Y   G ++ A  +F ++  RD ISWTS++ GY+ 
Sbjct: 255 CKRVHEYVSECKTEPSLRLENALVNAYAACGEMDIAVRIFRSMKARDVISWTSIVKGYVE 314

Query: 279 VGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVL 338
            G +  A   F  MP RD ++WT MI G ++   F E+  +F EM++ G+ P   T   +
Sbjct: 315 RGNLKLARTYFDQMPVRDRISWTIMIDGYLRAGCFNESLEIFREMQSAGMIPDEFTMVSV 374

Query: 339 FGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDL 398
             A     ++++G  I   + K + ++D+++ N LI MY KCG  + A  +F +M  RD 
Sbjct: 375 LTACAHLGSLEIGEWIKTYIDKNKIKNDVVVGNALIDMYFKCGCSEKAQKVFHDMDQRDK 434

Query: 399 VSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNA 458
            +W +MV+G +++G   E +KVF  M +    P+ +T+LG+LSAC+H+G+V +  + F  
Sbjct: 435 FTWTAMVVGLANNGQGQEAIKVFFQMQDMSIQPDDITYLGVLSACNHSGMVDQARKFFAK 494

Query: 459 MFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNA 518
           M   ++I+P   HY  M+++LGRAG +KEA E + ++P  P+  +WGALLGA      + 
Sbjct: 495 MRSDHRIEPSLVHYGCMVDMLGRAGLVKEAYEILRKMPMNPNSIVWGALLGASRL-HNDE 553

Query: 519 EIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMR 578
            +AE AAK++LEL+P N   + +LCNIYA   R  +  ++R  +    ++K PG S +  
Sbjct: 554 PMAELAAKKILELEPDNGAVYALLCNIYAGCKRWKDLREVRRKIVDVAIKKTPGFSLIEV 613

Query: 579 NGGIQMFLSGDKIPAQVAEILL 600
           NG    F++GDK   Q  EI +
Sbjct: 614 NGFAHEFVAGDKSHLQSEEIYM 635



 Score =  145 bits (367), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 135/528 (25%), Positives = 230/528 (43%), Gaps = 47/528 (8%)

Query: 41  NVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMP 100
           N+   NA++  +   G +  AR +F+   + +V SW  MI G        E+ +L  EM 
Sbjct: 169 NLYVQNALVKMYSLCGLMDMARGVFDRRCKEDVFSWNLMISGYNRMKEYEESIELLVEM- 227

Query: 101 ERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISW-------------NAMIAGYVE 147
           ERN+VS  S+ + L+    L+   KV +    K V  +             NA++  Y  
Sbjct: 228 ERNLVSPTSVTLLLV----LSACSKVKDKDLCKRVHEYVSECKTEPSLRLENALVNAYAA 283

Query: 148 CCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGF 207
           C  M  A+ +F  M+ R+V++WTS++ GY   G ++     F +MP ++ +SWT MI G+
Sbjct: 284 CGEMDIAVRIFRSMKARDVISWTSIVKGYVERGNLKLARTYFDQMPVRDRISWTIMIDGY 343

Query: 208 AWNGFHKESLLLFIEMKG---ICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVR 264
              G   ESL +F EM+    I D     +V +  + + G +  G  E  +   D   ++
Sbjct: 344 LRAGCFNESLEIFREMQSAGMIPDEFTMVSVLTACAHL-GSLEIG--EWIKTYIDKNKIK 400

Query: 265 -DEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEM 323
            D +   ++ID Y   G    A  +FH+M  RD   WTAM+ GL  N    EA  +F +M
Sbjct: 401 NDVVVGNALIDMYFKCGCSEKAQKVFHDMDQRDKFTWTAMVVGLANNGQGQEAIKVFFQM 460

Query: 324 RAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTES-ESDLILENCLISMYAKCGV 382
           +   + P + T+  +  A   +  +D  R+    +      E  L+   C++ M  + G+
Sbjct: 461 QDMSIQPDDITYLGVLSACNHSGMVDQARKFFAKMRSDHRIEPSLVHYGCMVDMLGRAGL 520

Query: 383 IDNAYNIFSNM-VSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFL--GI 439
           +  AY I   M ++ + + W +++     H          + +LE      +V  L   I
Sbjct: 521 VKEAYEILRKMPMNPNSIVWGALLGASRLHNDEPMAELAAKKILELEPDNGAVYALLCNI 580

Query: 440 LSACSHAGLVSRGWELFNAMFDV-YKIQPGPEHYVSMINLLGRAGKIK-------EAEEF 491
            + C     +    E+   + DV  K  PG     S+I + G A +         ++EE 
Sbjct: 581 YAGCKRWKDLR---EVRRKIVDVAIKKTPG----FSLIEVNGFAHEFVAGDKSHLQSEEI 633

Query: 492 VLRLPFEPDHRIWGALLGACG---FCEGNAEIAEHAAKRLLELDPLNA 536
            ++L        + A L       F  GN E+ EH+    L  +P+ +
Sbjct: 634 YMKLEELAQESTFAAYLPDTSELLFEAGNKELEEHSQVTTLRTNPIES 681



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 68/269 (25%), Positives = 139/269 (51%), Gaps = 15/269 (5%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWT 77
           +  Y+  G +D A  +F+ M  R+V+S+ +++ G+++ G L  AR  F++MP R+ +SWT
Sbjct: 278 VNAYAACGEMDIAVRIFRSMKARDVISWTSIVKGYVERGNLKLARTYFDQMPVRDRISWT 337

Query: 78  AMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIR------NGELNEARKVF-NSM 130
            MI G   AG   E+ ++F EM    ++     +V ++       + E+ E  K + +  
Sbjct: 338 IMIDGYLRAGCFNESLEIFREMQSAGMIPDEFTMVSVLTACAHLGSLEIGEWIKTYIDKN 397

Query: 131 PIKN-VISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLF 189
            IKN V+  NA+I  Y +C    +A  +F +M++R+  TWT+M+ G    G+ +E   +F
Sbjct: 398 KIKNDVVVGNALIDMYFKCGCSEKAQKVFHDMDQRDKFTWTAMVVGLANNGQGQEAIKVF 457

Query: 190 RRMPRKNV----VSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGY 245
            +M   ++    +++  ++     +G   ++   F +M+   D+    ++     M++  
Sbjct: 458 FQMQDMSIQPDDITYLGVLSACNHSGMVDQARKFFAKMRS--DHRIEPSLVHYGCMVDML 515

Query: 246 IRFGRLEEAQNLFDTVPVR-DEISWTSMI 273
            R G ++EA  +   +P+  + I W +++
Sbjct: 516 GRAGLVKEAYEILRKMPMNPNSIVWGALL 544



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 66/245 (26%), Positives = 109/245 (44%), Gaps = 49/245 (20%)

Query: 11  VVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMP- 69
           V+  TS +  Y +RG +  A+  F  MP R+ +S+  M+ G+L+ G  +E+  +F EM  
Sbjct: 302 VISWTSIVKGYVERGNLKLARTYFDQMPVRDRISWTIMIDGYLRAGCFNESLEIFREMQS 361

Query: 70  --------------------------------------ERNVVSWTAMICGLADAGRVCE 91
                                                 + +VV   A+I      G   +
Sbjct: 362 AGMIPDEFTMVSVLTACAHLGSLEIGEWIKTYIDKNKIKNDVVVGNALIDMYFKCGCSEK 421

Query: 92  ARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECC-- 149
           A+K+F +M +R+  +W +MVVGL  NG+  EA KVF  M   ++   +    G +  C  
Sbjct: 422 AQKVFHDMDQRDKFTWTAMVVGLANNGQGQEAIKVFFQMQDMSIQPDDITYLGVLSACNH 481

Query: 150 --MMGEAIVLFEEME-----ERNVVTWTSMISGYCRAGEVEEGYCLFRRMP-RKNVVSWT 201
             M+ +A   F +M      E ++V +  M+    RAG V+E Y + R+MP   N + W 
Sbjct: 482 SGMVDQARKFFAKMRSDHRIEPSLVHYGCMVDMLGRAGLVKEAYEILRKMPMNPNSIVWG 541

Query: 202 AMIGG 206
           A++G 
Sbjct: 542 ALLGA 546



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 44/152 (28%), Positives = 80/152 (52%), Gaps = 10/152 (6%)

Query: 3   ERNHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEAR 62
           ++N  K+ VV   + I  Y K G  ++A+ +F  M QR+  ++ AM+ G   NG+  EA 
Sbjct: 395 DKNKIKNDVVVGNALIDMYFKCGCSEKAQKVFHDMDQRDKFTWTAMVVGLANNGQGQEAI 454

Query: 63  RLFEEMPERNV----VSWTAMICGLADAGRVCEARKLFEEMP-----ERNVVSWNSMVVG 113
           ++F +M + ++    +++  ++     +G V +ARK F +M      E ++V +  MV  
Sbjct: 455 KVFFQMQDMSIQPDDITYLGVLSACNHSGMVDQARKFFAKMRSDHRIEPSLVHYGCMVDM 514

Query: 114 LIRNGELNEARKVFNSMPIK-NVISWNAMIAG 144
           L R G + EA ++   MP+  N I W A++  
Sbjct: 515 LGRAGLVKEAYEILRKMPMNPNSIVWGALLGA 546


>gi|147857367|emb|CAN80796.1| hypothetical protein VITISV_034275 [Vitis vinifera]
          Length = 771

 Score =  305 bits (780), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 185/541 (34%), Positives = 283/541 (52%), Gaps = 14/541 (2%)

Query: 70  ERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNS 129
           +R+V    A++    +   V  AR +F++M ER+VVSW++M+  L RN E + A ++   
Sbjct: 126 DRDVFVGNALMLMYGECACVEYARLVFDKMMERDVVSWSTMIRSLSRNKEFDMALELIRE 185

Query: 130 MPIKNV----ISWNAMIAGYVECC--MMGEA----IVLFEEMEERNVVTWTSMISGYCRA 179
           M    V    ++  +M+  + +     MG+A    ++     E   V T T+++  Y + 
Sbjct: 186 MNFMQVRPSEVAMVSMVNLFADTANMRMGKAMHAYVIRNSNNEHMGVPTTTALLDMYAKC 245

Query: 180 GEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQS-- 237
           G +     LF  + +K VVSWTAMI G   +   +E   LFI M+      N   + S  
Sbjct: 246 GHLGLARQLFNGLTQKTVVSWTAMIAGCIRSNRLEEGTKLFIRMQEENIFPNEITMLSLI 305

Query: 238 CNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDA 297
                 G ++ G+   A  L +   V   ++ T+++D Y     + NA  LF +  +RD 
Sbjct: 306 VECGFTGALQLGKQLHAYILRNGFSVSLALA-TALVDMYGKCSDIRNARALFDSTQNRDV 364

Query: 298 VAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCV 357
           + WTAM+S   Q     +A  LF +MR  GV P   T   L         +DLG+ +H  
Sbjct: 365 MIWTAMLSAYAQANCIDQAFNLFDQMRTSGVRPTKVTIVSLLSLCAVAGALDLGKWVHSY 424

Query: 358 LMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANET 417
           + K   E D IL   L+ MYAKCG I+ A  +F   +SRD+  WN+++ GF+ HG   E 
Sbjct: 425 IDKERVEVDCILNTALVDMYAKCGDINAAGRLFIEAISRDICMWNAIITGFAMHGYGEEA 484

Query: 418 LKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMIN 477
           L +F  M   G  PN +TF+G+L ACSHAGLV+ G +LF  M   + + P  EHY  M++
Sbjct: 485 LDIFAEMERQGVKPNDITFIGLLHACSHAGLVTEGKKLFEKMVHTFGLVPQIEHYGCMVD 544

Query: 478 LLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAP 537
           LLGRAG + EA E +  +P +P+  +WGAL+ AC     N ++ E AA +LLE++P N  
Sbjct: 545 LLGRAGLLDEAHEMIKSMPIKPNTIVWGALVAACRL-HKNPQLGELAATQLLEIEPENCG 603

Query: 538 AHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAE 597
            +V++ NIYAA+ R  +   +R  M   G++K PG S +  NG +  FL GD+   Q+  
Sbjct: 604 YNVLMSNIYAAANRWSDAAGVRKTMKTVGMKKEPGHSVIEVNGTVHEFLMGDQSHPQIRR 663

Query: 598 I 598
           I
Sbjct: 664 I 664



 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 99/381 (25%), Positives = 171/381 (44%), Gaps = 42/381 (11%)

Query: 42  VVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPE 101
           V +  A+L  + + G L  AR+LF  + ++ VVSWTAMI G   + R+ E  KLF  M E
Sbjct: 232 VPTTTALLDMYAKCGHLGLARQLFNGLTQKTVVSWTAMIAGCIRSNRLEEGTKLFIRMQE 291

Query: 102 RNV----VSWNSMVV-----GLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMG 152
            N+    ++  S++V     G ++ G+   A  + N   +   ++  A++  Y +C  + 
Sbjct: 292 ENIFPNEITMLSLIVECGFTGALQLGKQLHAYILRNGFSVSLALA-TALVDMYGKCSDIR 350

Query: 153 EAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGF 212
            A  LF+  + R+V+ WT+M+S Y +A  +++ + LF +M    V      I        
Sbjct: 351 NARALFDSTQNRDVMIWTAMLSAYAQANCIDQAFNLFDQMRTSGVRPTKVTI-------- 402

Query: 213 HKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSM 272
              SLL    + G  D G           ++ YI   R+E            D I  T++
Sbjct: 403 --VSLLSLCAVAGALDLGK---------WVHSYIDKERVEV-----------DCILNTAL 440

Query: 273 IDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLN 332
           +D Y   G ++ A  LF     RD   W A+I+G   +    EA  +F EM   GV P +
Sbjct: 441 VDMYAKCGDINAAGRLFIEAISRDICMWNAIITGFAMHGYGEEALDIFAEMERQGVKPND 500

Query: 333 ATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILE-NCLISMYAKCGVIDNAYNIFS 391
            TF  L  A      +  G+++   ++ T      I    C++ +  + G++D A+ +  
Sbjct: 501 ITFIGLLHACSHAGLVTEGKKLFEKMVHTFGLVPQIEHYGCMVDLLGRAGLLDEAHEMIK 560

Query: 392 NM-VSRDLVSWNSMVMGFSHH 411
           +M +  + + W ++V     H
Sbjct: 561 SMPIKPNTIVWGALVAACRLH 581



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 91/390 (23%), Positives = 170/390 (43%), Gaps = 66/390 (16%)

Query: 15  TSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNV- 73
           T+ +  Y+K G +  A+ LF  + Q+ VVS+ AM++G +++ RL E  +LF  M E N+ 
Sbjct: 236 TALLDMYAKCGHLGLARQLFNGLTQKTVVSWTAMIAGCIRSNRLEEGTKLFIRMQEENIF 295

Query: 74  ---VSWTAMI--CGLADA------------------------------GRVCE---ARKL 95
              ++  ++I  CG   A                              G+  +   AR L
Sbjct: 296 PNEITMLSLIVECGFTGALQLGKQLHAYILRNGFSVSLALATALVDMYGKCSDIRNARAL 355

Query: 96  FEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAI 155
           F+    R+V+ W +M+    +   +++A  +F+ M    V      I   +  C +  A+
Sbjct: 356 FDSTQNRDVMIWTAMLSAYAQANCIDQAFNLFDQMRTSGVRPTKVTIVSLLSLCAVAGAL 415

Query: 156 VL--------FEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGF 207
            L         +E  E + +  T+++  Y + G++     LF     +++  W A+I GF
Sbjct: 416 DLGKWVHSYIDKERVEVDCILNTALVDMYAKCGDINAAGRLFIEAISRDICMWNAIITGF 475

Query: 208 AWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFD----TVPV 263
           A +G+ +E+L +F EM+     G   N  +   +++     G + E + LF+    T  +
Sbjct: 476 AMHGYGEEALDIFAEME---RQGVKPNDITFIGLLHACSHAGLVTEGKKLFEKMVHTFGL 532

Query: 264 RDEIS-WTSMIDGYLSVGQVSNAYYLFHNMPDR-DAVAWTAMISG--LVQNELFVE--AT 317
             +I  +  M+D     G +  A+ +  +MP + + + W A+++   L +N    E  AT
Sbjct: 533 VPQIEHYGCMVDLLGRAGLLDEAHEMIKSMPIKPNTIVWGALVAACRLHKNPQLGELAAT 592

Query: 318 YLFMEMRAHGVPPLNATFSVLFGAAGATAN 347
            L        + P N  ++VL     A AN
Sbjct: 593 QLL------EIEPENCGYNVLMSNIYAAAN 616



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 47/219 (21%), Positives = 88/219 (40%), Gaps = 51/219 (23%)

Query: 338 LFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRD 397
           +  A G  +   LG++IH  ++K   + D+ + N L+ MY +C  ++ A  +F  M+ RD
Sbjct: 100 VLKACGQVSWTQLGKEIHGFVLKKGLDRDVFVGNALMLMYGECACVEYARLVFDKMMERD 159

Query: 398 LVSWNSMVMGFSHHGLANETLKVFESM--------------------------LESGTH- 430
           +VSW++M+   S +   +  L++   M                          +    H 
Sbjct: 160 VVSWSTMIRSLSRNKEFDMALELIREMNFMQVRPSEVAMVSMVNLFADTANMRMGKAMHA 219

Query: 431 -------------PNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMIN 477
                        P +   L + + C H GL     +LFN +      Q     + +MI 
Sbjct: 220 YVIRNSNNEHMGVPTTTALLDMYAKCGHLGLAR---QLFNGL-----TQKTVVSWTAMIA 271

Query: 478 LLGRAGKIKEAEEFVLRLPFE---PDHRIWGALLGACGF 513
              R+ +++E  +  +R+  E   P+     +L+  CGF
Sbjct: 272 GCIRSNRLEEGTKLFIRMQEENIFPNEITMLSLIVECGF 310


>gi|225423499|ref|XP_002274432.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 738

 Score =  305 bits (780), Expect = 6e-80,   Method: Compositional matrix adjust.
 Identities = 200/588 (34%), Positives = 299/588 (50%), Gaps = 81/588 (13%)

Query: 56  GRLSEARRLFEEMPERNVVSWTAMI---------------------CGL----------- 83
           G LS A  LFE + + N   W  MI                     CG+           
Sbjct: 80  GNLSYALLLFESIEQPNQFIWNTMIRGNSLSSSPVGAIDFYVRMLLCGVEPNSYTFPFLL 139

Query: 84  ---ADAGRVCEARKLFEEM----PERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVI 136
              A  G   E +++   +     E +     S++    +NGEL  A  VF+   +++ +
Sbjct: 140 KSCAKVGATQEGKQIHGHVLKLGLESDPFVHTSLINMYAQNGELGYAELVFSKSSLRDAV 199

Query: 137 SWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKN 196
           S+ A+I GY     + +A  LFEE+  R+ V+W +MI+GY ++G  EE    F+ M R N
Sbjct: 200 SFTALITGYTLRGCLDDARRLFEEIPVRDAVSWNAMIAGYAQSGRFEEALAFFQEMKRAN 259

Query: 197 VV----SWTAMIGGFAWNGFHKESLLLFIEMKG-ICDNGNNCNVQSCNSMINGYIRFGRL 251
           V     +   ++   A +G    SL L   ++  I D+G   N++  N++I+ Y + G L
Sbjct: 260 VAPNESTMVTVLSACAQSG----SLELGNWVRSWIEDHGLGSNLRLVNALIDMYSKCGDL 315

Query: 252 EEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNE 311
           ++A++LF+ +  +D ISW  MI GY  +    N+Y                         
Sbjct: 316 DKARDLFEGICEKDIISWNVMIGGYSHM----NSYK------------------------ 347

Query: 312 LFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKT-ESESDLILE 370
              EA  LF +M+   V P + TF  +  A      +DLG+ IH  + K     ++  L 
Sbjct: 348 ---EALALFRKMQQSNVEPNDVTFVSILPACAYLGALDLGKWIHAYIDKKFLGLTNTSLW 404

Query: 371 NCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTH 430
             LI MYAKCG I+ A  +F+ M  + L SWN+M+ G + HG AN  L++F  M + G  
Sbjct: 405 TSLIDMYAKCGNIEAAKQVFAGMKPKSLGSWNAMISGLAMHGHANMALELFRQMRDEGFE 464

Query: 431 PNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEE 490
           P+ +TF+G+LSACSHAGLV  G + F++M + Y I P  +HY  MI+LLGRAG   EAE 
Sbjct: 465 PDDITFVGVLSACSHAGLVELGRQCFSSMVEDYDISPKLQHYGCMIDLLGRAGLFDEAEA 524

Query: 491 FVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASG 550
            +  +  +PD  IWG+LLGAC    GN E+ E AAK L EL+P N  A+V+L NIYA +G
Sbjct: 525 LMKNMEMKPDGAIWGSLLGACR-VHGNVELGEFAAKHLFELEPENPGAYVLLSNIYATAG 583

Query: 551 RHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
           R  +  ++R  +  KG++KVPGCS +  +  +  FL GDK+  Q  +I
Sbjct: 584 RWDDVARIRTKLNDKGMKKVPGCSSIEVDSVVHEFLVGDKVHEQSQDI 631



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 110/409 (26%), Positives = 191/409 (46%), Gaps = 20/409 (4%)

Query: 22  SKRGFIDEAKAL----FQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWT 77
           +K G   E K +     +L  + +   + ++++ + QNG L  A  +F +   R+ VS+T
Sbjct: 143 AKVGATQEGKQIHGHVLKLGLESDPFVHTSLINMYAQNGELGYAELVFSKSSLRDAVSFT 202

Query: 78  AMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVIS 137
           A+I G    G + +AR+LFEE+P R+ VSWN+M+ G  ++G   EA   F  M   NV  
Sbjct: 203 ALITGYTLRGCLDDARRLFEEIPVRDAVSWNAMIAGYAQSGRFEEALAFFQEMKRANVAP 262

Query: 138 WNAMIAGYVECCMMGEAIVLFEEMEE--------RNVVTWTSMISGYCRAGEVEEGYCLF 189
             + +   +  C    ++ L   +           N+    ++I  Y + G++++   LF
Sbjct: 263 NESTMVTVLSACAQSGSLELGNWVRSWIEDHGLGSNLRLVNALIDMYSKCGDLDKARDLF 322

Query: 190 RRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCN----VQSCNSMINGY 245
             +  K+++SW  MIGG++    +KE+L LF +M+      N+      + +C  +  G 
Sbjct: 323 EGICEKDIISWNVMIGGYSHMNSYKEALALFRKMQQSNVEPNDVTFVSILPACAYL--GA 380

Query: 246 IRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMIS 305
           +  G+   A      + + +   WTS+ID Y   G +  A  +F  M  +   +W AMIS
Sbjct: 381 LDLGKWIHAYIDKKFLGLTNTSLWTSLIDMYAKCGNIEAAKQVFAGMKPKSLGSWNAMIS 440

Query: 306 GLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKT-ESE 364
           GL  +     A  LF +MR  G  P + TF  +  A      ++LGRQ    +++  +  
Sbjct: 441 GLAMHGHANMALELFRQMRDEGFEPDDITFVGVLSACSHAGLVELGRQCFSSMVEDYDIS 500

Query: 365 SDLILENCLISMYAKCGVIDNAYNIFSNM-VSRDLVSWNSMVMGFSHHG 412
             L    C+I +  + G+ D A  +  NM +  D   W S++     HG
Sbjct: 501 PKLQHYGCMIDLLGRAGLFDEAEALMKNMEMKPDGAIWGSLLGACRVHG 549



 Score =  122 bits (306), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 115/412 (27%), Positives = 193/412 (46%), Gaps = 45/412 (10%)

Query: 12  VHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPER 71
           V  T+ IT Y+ RG +D+A+ LF+ +P R+ VS+NAM++G+ Q+GR  EA   F+EM   
Sbjct: 199 VSFTALITGYTLRGCLDDARRLFEEIPVRDAVSWNAMIAGYAQSGRFEEALAFFQEMKRA 258

Query: 72  NVV----SWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLI----RNGELNEA 123
           NV     +   ++   A +G +     +   + +  + S   +V  LI    + G+L++A
Sbjct: 259 NVAPNESTMVTVLSACAQSGSLELGNWVRSWIEDHGLGSNLRLVNALIDMYSKCGDLDKA 318

Query: 124 RKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNV----VTWTSMISGYCRA 179
           R +F  +  K++ISWN MI GY       EA+ LF +M++ NV    VT+ S++      
Sbjct: 319 RDLFEGICEKDIISWNVMIGGYSHMNSYKEALALFRKMQQSNVEPNDVTFVSILPACAYL 378

Query: 180 GEVEEGYCLFRRMPRK-----NVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCN 234
           G ++ G  +   + +K     N   WT++I  +A  G  + +  +F  MK         +
Sbjct: 379 GALDLGKWIHAYIDKKFLGLTNTSLWTSLIDMYAKCGNIEAAKQVFAGMKPK-------S 431

Query: 235 VQSCNSMINGYIRFGRLEEAQNLF----DTVPVRDEISWTSMIDGYLSVGQVSNAYYLFH 290
           + S N+MI+G    G    A  LF    D     D+I++  ++      G V      F 
Sbjct: 432 LGSWNAMISGLAMHGHANMALELFRQMRDEGFEPDDITFVGVLSACSHAGLVELGRQCFS 491

Query: 291 NMPDRDAVA-----WTAMISGLVQNELFVEATYLF--MEMRAHGVPPLNATFSVLFGAAG 343
           +M +   ++     +  MI  L +  LF EA  L   MEM+  G     A +  L GA  
Sbjct: 492 SMVEDYDISPKLQHYGCMIDLLGRAGLFDEAEALMKNMEMKPDG-----AIWGSLLGACR 546

Query: 344 ATANIDLGR--QIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNM 393
              N++LG     H   ++ E+    +L   L ++YA  G  D+   I + +
Sbjct: 547 VHGNVELGEFAAKHLFELEPENPGAYVL---LSNIYATAGRWDDVARIRTKL 595


>gi|357495039|ref|XP_003617808.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355519143|gb|AET00767.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 811

 Score =  305 bits (780), Expect = 6e-80,   Method: Compositional matrix adjust.
 Identities = 195/620 (31%), Positives = 314/620 (50%), Gaps = 55/620 (8%)

Query: 21  YSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEAR----RLFEEMPERN---- 72
           Y +   + +A  LF  MPQ N +S+  +  G+ ++ +  +A     R+F+E  E N    
Sbjct: 80  YVQSNSLQDASKLFDEMPQTNTISFVTLAQGYSRDHQFHQALHFILRIFKEGHEVNPFVF 139

Query: 73  ------VVS-------WTAMIC--------------GLADA----GRVCEARKLFEEMPE 101
                 +VS       WT   C               L DA    G V  AR +F+++  
Sbjct: 140 TTLLKLLVSMDLAHLCWTLHACVYKLGHHADAFVGTALIDAYSVRGNVDVARHVFDDICC 199

Query: 102 RNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEM 161
           +++VSW  MV     N    E+ ++FN M I      N  I+G ++ C+  EA  + + +
Sbjct: 200 KDMVSWTGMVACYAENCFYEESLQLFNQMRIMGYKPNNFTISGALKSCLGLEAFNVGKSV 259

Query: 162 E--------ERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFH 213
                    + ++    +++  Y ++GE+ +   LF  MP+ +++ W+ MI  +A +   
Sbjct: 260 HGCALKGCYDHDLFVGIALLELYAKSGEIIDAQRLFEEMPKTDLIPWSLMIARYAQSDRS 319

Query: 214 KESLLLFIEMKGICDNGNNCN----VQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISW 269
           KE+L LF+ M+      NN      +Q+C S ++  +  G+   +  L   +     +S 
Sbjct: 320 KEALDLFLRMRQTSVVPNNFTFASVLQACASSVS--LDLGKQIHSCVLKFGLNSNVFVS- 376

Query: 270 TSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVP 329
            +++D Y   G++ N+  LF  +PDR+ V W  +I G VQ      A  LF  M  H + 
Sbjct: 377 NAIMDVYAKCGEIENSMKLFEELPDRNDVTWNTIIVGYVQLGDGERAMNLFTHMLEHDMQ 436

Query: 330 PLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNI 389
           P   T+S +  A+ + A ++ G QIH + +KT    D ++ N LI MYAKCG I++A   
Sbjct: 437 PTEVTYSSVLRASASLAALEPGLQIHSLTIKTMYNKDTVVANSLIDMYAKCGRINDARLT 496

Query: 390 FSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLV 449
           F  M  RD VSWN+M+ G+S HG++ E L +F+ M  +   PN +TF+G+LSACS+AGL+
Sbjct: 497 FDKMNKRDEVSWNAMICGYSMHGMSMEALNLFDMMQHTDCKPNKLTFVGVLSACSNAGLL 556

Query: 450 SRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLG 509
            +G   F +M   Y I+P  EHY  M+ LLGR G+  EA + +  + ++P   +W ALLG
Sbjct: 557 YKGQAHFESMSKDYDIKPCIEHYTCMVWLLGRLGRFDEAMKLIGEIAYQPSVMVWRALLG 616

Query: 510 ACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRK 569
           AC       ++    A+ +LE++P +   HV+L N+YA +GR      +R  M  K VRK
Sbjct: 617 AC-VIHKKVDLGRVCAQHVLEMEPHDDATHVLLSNMYATAGRWDNVAFVRKYMQKKKVRK 675

Query: 570 VPGCSWLMRNGGIQMFLSGD 589
            PG SW+   G +  F  GD
Sbjct: 676 EPGLSWVENQGVVHYFSVGD 695



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 105/453 (23%), Positives = 202/453 (44%), Gaps = 46/453 (10%)

Query: 106 SWNSMVVGLIRNGELNEARKVFNSMPIK-----NVISWNAMIAGYVECCMMGEAIVLFEE 160
           S+  M+  +IRNG    A K  +   +K     ++ + N ++  YV+   + +A  LF+E
Sbjct: 36  SYAHMLQQIIRNGADPIAGKHLHCHILKRGTSLDLFAQNILLNFYVQSNSLQDASKLFDE 95

Query: 161 MEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLF 220
           M + N +++ ++  GY R  +  +      R+ ++        +  F +    K  LL+ 
Sbjct: 96  MPQTNTISFVTLAQGYSRDHQFHQALHFILRIFKEG-----HEVNPFVFTTLLK--LLVS 148

Query: 221 IEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVG 280
           +++  +C   + C             + G   +A               T++ID Y   G
Sbjct: 149 MDLAHLCWTLHAC-----------VYKLGHHADA------------FVGTALIDAYSVRG 185

Query: 281 QVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFG 340
            V  A ++F ++  +D V+WT M++   +N  + E+  LF +MR  G  P N T S    
Sbjct: 186 NVDVARHVFDDICCKDMVSWTGMVACYAENCFYEESLQLFNQMRIMGYKPNNFTISGALK 245

Query: 341 AAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVS 400
           +       ++G+ +H   +K   + DL +   L+ +YAK G I +A  +F  M   DL+ 
Sbjct: 246 SCLGLEAFNVGKSVHGCALKGCYDHDLFVGIALLELYAKSGEIIDAQRLFEEMPKTDLIP 305

Query: 401 WNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMF 460
           W+ M+  ++    + E L +F  M ++   PN+ TF  +L AC+ +  +  G ++ +   
Sbjct: 306 WSLMIARYAQSDRSKEALDLFLRMRQTSVVPNNFTFASVLQACASSVSLDLGKQIHSC-- 363

Query: 461 DVYKIQPGPEHYVS--MINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCE-GN 517
            V K       +VS  ++++  + G+I+ + +    LP   D   W  ++   G+ + G+
Sbjct: 364 -VLKFGLNSNVFVSNAIMDVYAKCGEIENSMKLFEELPDRND-VTWNTII--VGYVQLGD 419

Query: 518 AEIAEHAAKRLLELDPLNAPAHVVLCNIYAASG 550
            E A +    +LE D    P  V   ++  AS 
Sbjct: 420 GERAMNLFTHMLEHDM--QPTEVTYSSVLRASA 450



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 109/468 (23%), Positives = 190/468 (40%), Gaps = 102/468 (21%)

Query: 21  YSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVS----- 75
           Y+K G I +A+ LF+ MP+ +++ ++ M++ + Q+ R  EA  LF  M + +VV      
Sbjct: 282 YAKSGEIIDAQRLFEEMPKTDLIPWSLMIARYAQSDRSKEALDLFLRMRQTSVVPNNFTF 341

Query: 76  ----------------------------------WTAMICGLADAGRVCEARKLFEEMPE 101
                                               A++   A  G +  + KLFEE+P+
Sbjct: 342 ASVLQACASSVSLDLGKQIHSCVLKFGLNSNVFVSNAIMDVYAKCGEIENSMKLFEELPD 401

Query: 102 RNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNV----ISWNAMIAGYVECCMMGEAI-- 155
           RN V+WN+++VG ++ G+   A  +F  M   ++    +++++++        +   +  
Sbjct: 402 RNDVTWNTIIVGYVQLGDGERAMNLFTHMLEHDMQPTEVTYSSVLRASASLAALEPGLQI 461

Query: 156 --VLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFH 213
             +  + M  ++ V   S+I  Y + G + +    F +M +++ VSW AMI G++ +G  
Sbjct: 462 HSLTIKTMYNKDTVVANSLIDMYAKCGRINDARLTFDKMNKRDEVSWNAMICGYSMHGMS 521

Query: 214 KESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMI 273
            E+L LF  M            Q  +   N     G L    N                 
Sbjct: 522 MEALNLFDMM------------QHTDCKPNKLTFVGVLSACSNA---------------- 553

Query: 274 DGYLSVGQVSNAYYLFHNM-PDRDAVA----WTAMISGLVQNELFVEATYLFMEMRAHGV 328
            G L  GQ       F +M  D D       +T M+  L +   F EA  L  E+     
Sbjct: 554 -GLLYKGQAH-----FESMSKDYDIKPCIEHYTCMVWLLGRLGRFDEAMKLIGEI---AY 604

Query: 329 PPLNATFSVLFGAAGATANIDLGRQI--HCVLMKTESESDLILENCLISMYAKCGVIDNA 386
            P    +  L GA      +DLGR    H + M+   ++  +L   L +MYA  G  DN 
Sbjct: 605 QPSVMVWRALLGACVIHKKVDLGRVCAQHVLEMEPHDDATHVL---LSNMYATAGRWDNV 661

Query: 387 YNIFSNMVSRDL-----VSW---NSMVMGFSHHGLANETLKVFESMLE 426
             +   M  + +     +SW     +V  FS    ++  +K+  +MLE
Sbjct: 662 AFVRKYMQKKKVRKEPGLSWVENQGVVHYFSVGDTSHPDIKLICAMLE 709



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 51/199 (25%), Positives = 94/199 (47%), Gaps = 21/199 (10%)

Query: 16  SSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPER---- 71
           S I  Y+K G I++A+  F  M +R+ VS+NAM+ G+  +G   EA  LF+ M       
Sbjct: 479 SLIDMYAKCGRINDARLTFDKMNKRDEVSWNAMICGYSMHGMSMEALNLFDMMQHTDCKP 538

Query: 72  NVVSWTAMICGLADAGRVCEARKLFEEMPERNVVS-----WNSMVVGLIRNGELNEARKV 126
           N +++  ++   ++AG + + +  FE M +   +      +  MV  L R G  +EA K+
Sbjct: 539 NKLTFVGVLSACSNAGLLYKGQAHFESMSKDYDIKPCIEHYTCMVWLLGRLGRFDEAMKL 598

Query: 127 FNSMPIK-NVISWNAMIAGYVECCMMGEAIVLFE-------EMEERNVVTWTSMISGYCR 178
              +  + +V+ W A++      C++ + + L         EME  +  T   + + Y  
Sbjct: 599 IGEIAYQPSVMVWRALLGA----CVIHKKVDLGRVCAQHVLEMEPHDDATHVLLSNMYAT 654

Query: 179 AGEVEEGYCLFRRMPRKNV 197
           AG  +    + + M +K V
Sbjct: 655 AGRWDNVAFVRKYMQKKKV 673


>gi|147767942|emb|CAN73397.1| hypothetical protein VITISV_016435 [Vitis vinifera]
          Length = 929

 Score =  305 bits (780), Expect = 6e-80,   Method: Compositional matrix adjust.
 Identities = 197/632 (31%), Positives = 308/632 (48%), Gaps = 63/632 (9%)

Query: 16  SSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNV-- 73
           S +  + K G +D A+  F+ +  ++V  +N M+SG+   G   +A +   +M    V  
Sbjct: 230 SILDMFIKCGRMDIARRFFEEIEFKDVFMWNIMVSGYTSKGEFKKALKCISDMKLSGVKP 289

Query: 74  --VSWTAMICGLADAGRVCEARKLFEEMP-----ERNVVSWNSMVVGLIRNGELNEARKV 126
             V+W A+I G A +G+  EA K F EM      + NVVSW +++ G  +NG   EA  V
Sbjct: 290 DQVTWNAIISGYAQSGQFEEASKYFLEMGGLKDFKPNVVSWTALIAGSEQNGYDFEALSV 349

Query: 127 FNSMPIKNVISWNAMIAGYVECCM------MGEAI----VLFEEMEERNVVTWTSMISGY 176
           F  M ++ V   +  IA  V  C        G  I    +  EE++  +++   S++  Y
Sbjct: 350 FRKMVLEGVKPNSITIASAVSACTNLSLLRHGREIHGYCIKVEELDS-DLLVGNSLVDYY 408

Query: 177 CRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQ 236
            +   VE     F  + + ++VSW AM+ G+A  G H+E++ L  EMK     G   ++ 
Sbjct: 409 AKCRSVEVARRKFGMIKQTDLVSWNAMLAGYALRGSHEEAIELLSEMKF---QGIEPDII 465

Query: 237 SCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSV-GQVSN----------- 284
           + N ++ G+ ++G  + A   F  +        T+ I G L+  GQV N           
Sbjct: 466 TWNGLVTGFTQYGDGKAALEFFQRMHSMGMDPNTTTISGALAACGQVRNLKLGKEIHGYV 525

Query: 285 ---------------------------AYYLFHNMPDRDAVAWTAMISGLVQNELFVEAT 317
                                      A  +F  +  RD V W ++IS   Q+   V A 
Sbjct: 526 LRNHIELSTGVGSALISMYSGCDSLEVACSVFSELSTRDVVVWNSIISACAQSGRSVNAL 585

Query: 318 YLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMY 377
            L  EM    V     T      A    A +  G++IH  +++   ++   + N LI MY
Sbjct: 586 DLLREMNLSNVEVNTVTMVSALPACSKLAALRQGKEIHQFIIRCGLDTCNFILNSLIDMY 645

Query: 378 AKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFL 437
            +CG I  +  IF  M  RDLVSWN M+  +  HG   + + +F+     G  PN +TF 
Sbjct: 646 GRCGSIQKSRRIFDLMPQRDLVSWNVMISVYGMHGFGMDAVNLFQXFRTMGLKPNHITFT 705

Query: 438 GILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPF 497
            +LSACSH+GL+  GW+ F  M   Y + P  E Y  M++LL RAG+  E  EF+ ++PF
Sbjct: 706 NLLSACSHSGLIEEGWKYFKMMKTEYAMDPAVEQYACMVDLLSRAGQFNETLEFIEKMPF 765

Query: 498 EPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHK 557
           EP+  +WG+LLGAC     N ++AE+AA+ L EL+P ++  +V++ NIY+A+GR  +  K
Sbjct: 766 EPNAAVWGSLLGACRI-HCNPDLAEYAARYLFELEPQSSGNYVLMANIYSAAGRWEDAAK 824

Query: 558 LRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGD 589
           +R  M  +GV K PGCSW+     +  F+ GD
Sbjct: 825 IRCLMKERGVTKPPGCSWIEVKRKLHSFVVGD 856



 Score =  189 bits (481), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 150/554 (27%), Positives = 248/554 (44%), Gaps = 95/554 (17%)

Query: 48  MLSGFLQNGRLSEARRLFEEMPERNVVSWTA---MICGLADAGRVCEA------------ 92
           +L  + Q G + +ARR+F++M ERNV SWTA   M CGL D     +             
Sbjct: 130 LLEVYCQTGCVEDARRMFDKMSERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPD 189

Query: 93  ----RKLFEEMPE-------RNVVSW--------NSMVVG-----LIRNGELNEARKVFN 128
                K+F+   E       ++V  +        NS V G      I+ G ++ AR+ F 
Sbjct: 190 HFVFPKVFKACSELKNYRVGKDVYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFE 249

Query: 129 SMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNV----VTWTSMISGYCRAGEVEE 184
            +  K+V  WN M++GY       +A+    +M+   V    VTW ++ISGY ++G+ EE
Sbjct: 250 EIEFKDVFMWNIMVSGYTSKGEFKKALKCISDMKLSGVKPDQVTWNAIISGYAQSGQFEE 309

Query: 185 GYCLFRRMP-----RKNVVSWTAMIGGFAWNGFHKESLLLFIEM--KGICDNGNN--CNV 235
               F  M      + NVVSWTA+I G   NG+  E+L +F +M  +G+  N       V
Sbjct: 310 ASKYFLEMGGLKDFKPNVVSWTALIAGSEQNGYDFEALSVFRKMVLEGVKPNSITIASAV 369

Query: 236 QSC-----------------------------NSMINGYIRFGRLEEAQNLFDTVPVRDE 266
            +C                             NS+++ Y +   +E A+  F  +   D 
Sbjct: 370 SACTNLSLLRHGREIHGYCIKVEELDSDLLVGNSLVDYYAKCRSVEVARRKFGMIKQTDL 429

Query: 267 ISWTSMIDGYLSVGQVSNAYYLFHNMP----DRDAVAWTAMISGLVQNELFVEATYLFME 322
           +SW +M+ GY   G    A  L   M     + D + W  +++G  Q      A   F  
Sbjct: 430 VSWNAMLAGYALRGSHEEAIELLSEMKFQGIEPDIITWNGLVTGFTQYGDGKAALEFFQR 489

Query: 323 MRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGV 382
           M + G+ P   T S    A G   N+ LG++IH  +++   E    + + LISMY+ C  
Sbjct: 490 MHSMGMDPNTTTISGALAACGQVRNLKLGKEIHGYVLRNHIELSTGVGSALISMYSGCDS 549

Query: 383 IDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSA 442
           ++ A ++FS + +RD+V WNS++   +  G +   L +   M  S    N+VT +  L A
Sbjct: 550 LEVACSVFSELSTRDVVVWNSIISACAQSGRSVNALDLLREMNLSNVEVNTVTMVSALPA 609

Query: 443 CSHAGLVSRGWELFNAMFDVYKIQPGPE--HYV--SMINLLGRAGKIKEAEEFVLRLPFE 498
           CS    + +G E+       + I+ G +  +++  S+I++ GR G I+++      +P +
Sbjct: 610 CSKLAALRQGKEIHQ-----FIIRCGLDTCNFILNSLIDMYGRCGSIQKSRRIFDLMP-Q 663

Query: 499 PDHRIWGALLGACG 512
            D   W  ++   G
Sbjct: 664 RDLVSWNVMISVYG 677



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 62/242 (25%), Positives = 111/242 (45%), Gaps = 3/242 (1%)

Query: 235 VQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPD 294
           +Q C  + N  +R G    AQ + + V V  E   + +++ Y   G V +A  +F  M +
Sbjct: 96  LQKCRKLYN--LRLGFQVHAQLVVNGVDVC-EFLGSRLLEVYCQTGCVEDARRMFDKMSE 152

Query: 295 RDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQI 354
           R+  +WTA++        + E   LF  M   GV P +  F  +F A     N  +G+ +
Sbjct: 153 RNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVFKACSELKNYRVGKDV 212

Query: 355 HCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLA 414
           +  ++    E +  ++  ++ M+ KCG +D A   F  +  +D+  WN MV G++  G  
Sbjct: 213 YDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFKDVFMWNIMVSGYTSKGEF 272

Query: 415 NETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVS 474
            + LK    M  SG  P+ VT+  I+S  + +G      + F  M  +   +P    + +
Sbjct: 273 KKALKCISDMKLSGVKPDQVTWNAIISGYAQSGQFEEASKYFLEMGGLKDFKPNVVSWTA 332

Query: 475 MI 476
           +I
Sbjct: 333 LI 334



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 49/185 (26%), Positives = 87/185 (47%), Gaps = 13/185 (7%)

Query: 14  LTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMP---- 69
           L S I  Y + G I +++ +F LMPQR++VS+N M+S +  +G   +A  LF+       
Sbjct: 638 LNSLIDMYGRCGSIQKSRRIFDLMPQRDLVSWNVMISVYGMHGFGMDAVNLFQXFRTMGL 697

Query: 70  ERNVVSWTAMICGLADAGRVCEARKLFEEMP-----ERNVVSWNSMVVGLIRNGELNEAR 124
           + N +++T ++   + +G + E  K F+ M      +  V  +  MV  L R G+ NE  
Sbjct: 698 KPNHITFTNLLSACSHSGLIEEGWKYFKMMKTEYAMDPAVEQYACMVDLLSRAGQFNETL 757

Query: 125 KVFNSMPIK-NVISWNAMIAGYVECC---MMGEAIVLFEEMEERNVVTWTSMISGYCRAG 180
           +    MP + N   W +++      C   +   A     E+E ++   +  M + Y  AG
Sbjct: 758 EFIEKMPFEPNAAVWGSLLGACRIHCNPDLAEYAARYLFELEPQSSGNYVLMANIYSAAG 817

Query: 181 EVEEG 185
             E+ 
Sbjct: 818 RWEDA 822


>gi|225459736|ref|XP_002284744.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20230
           [Vitis vinifera]
          Length = 758

 Score =  305 bits (780), Expect = 6e-80,   Method: Compositional matrix adjust.
 Identities = 185/600 (30%), Positives = 311/600 (51%), Gaps = 49/600 (8%)

Query: 48  MLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSW 107
           +LS +  N   ++A  + + +PE NV S++ +I   +   +   A   F +M  R ++  
Sbjct: 54  LLSHYANNMCFADATLVLDLVPEPNVFSFSTLIYAFSKFHQFHHALSTFSQMLTRGLMPD 113

Query: 108 NSMVVGLIRN----GELNEARKVFNSMPIKNVIS----WNAMIAGYVECCMMGEAIVLFE 159
           N ++   ++       L  AR+V     +    S     ++++  Y++C  + +A  +F+
Sbjct: 114 NRVLPSAVKACAGLSALKPARQVHGIASVSGFDSDSFVQSSLVHMYIKCNQIRDAHRVFD 173

Query: 160 EMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMP----RKNVVSWTAMIGGFAWNGFHKE 215
            M E +VV+W+++++ Y R G V+E   LF  M     + N++SW  MI GF  +G + E
Sbjct: 174 RMFEPDVVSWSALVAAYARQGCVDEAKRLFSEMGDSGVQPNLISWNGMIAGFNHSGLYSE 233

Query: 216 SLLLFIEM--KGICDNGNNCNV----------------------------QSC--NSMIN 243
           ++L+F++M  +G   +G   +                               C  +++I+
Sbjct: 234 AVLMFLDMHLRGFEPDGTTISSVLPAVGDLEDLVMGILIHGYVIKQGLVSDKCVSSALID 293

Query: 244 GYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDR----DAVA 299
            Y +     E   +FD +   D  S  + I G    GQV ++  LF  + D+    + V+
Sbjct: 294 MYGKCSCTSEMSQVFDQMDHMDVGSCNAFIFGLSRNGQVESSLRLFRQLKDQGMELNVVS 353

Query: 300 WTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLM 359
           WT+MI+   QN   +EA  LF EM+  GV P + T   L  A G  A +  G+  HC  +
Sbjct: 354 WTSMIACCSQNGRDIEALELFREMQIAGVKPNSVTIPCLLPACGNIAALMHGKAAHCFSL 413

Query: 360 KTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLK 419
           +    +D+ + + LI MYAKCG I  +   F  + +++LV WN+++ G++ HG A E ++
Sbjct: 414 RRGISTDVYVGSALIDMYAKCGRIQASRICFDGIPTKNLVCWNAVIAGYAMHGKAKEAME 473

Query: 420 VFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLL 479
           +F+ M  SG  P+ ++F  +LSACS +GL   G   FN+M   Y I+   EHY  M+ LL
Sbjct: 474 IFDLMQRSGQKPDIISFTCVLSACSQSGLTEEGSYYFNSMSSKYGIEARVEHYACMVTLL 533

Query: 480 GRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAH 539
            RAGK+++A   + R+P  PD  +WGALL +C     N  + E AA++L EL+P N   +
Sbjct: 534 SRAGKLEQAYAMIRRMPVNPDACVWGALLSSCRV-HNNVSLGEVAAEKLFELEPSNPGNY 592

Query: 540 VVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEIL 599
           ++L NIYA+ G   E +++R  M  KG+RK PGCSW+     + M L+GDK   Q+ +I+
Sbjct: 593 ILLSNIYASKGMWNEVNRVRDMMKNKGLRKNPGCSWIEVKNKVHMLLAGDKSHPQMTQII 652



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 45/192 (23%), Positives = 85/192 (44%), Gaps = 5/192 (2%)

Query: 321 MEMRAHGVPPLNATFSVLFGAAGAT-ANIDLGRQIHCVLMKTESESDLILENCLISMYAK 379
           M + A  +  L++    +F    +T A++   RQ H  ++KT   +D  L   L+S YA 
Sbjct: 1   MSLSAQALALLDSVQHTIFNCLNSTTASLSQTRQAHAHILKTGLFNDTHLATKLLSHYAN 60

Query: 380 CGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGI 439
                +A  +   +   ++ S+++++  FS     +  L  F  ML  G  P++      
Sbjct: 61  NMCFADATLVLDLVPEPNVFSFSTLIYAFSKFHQFHHALSTFSQMLTRGLMPDNRVLPSA 120

Query: 440 LSACSHAGLVS-RGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFE 498
           + AC  AGL + +     + +  V           S++++  +  +I++A     R+ FE
Sbjct: 121 VKAC--AGLSALKPARQVHGIASVSGFDSDSFVQSSLVHMYIKCNQIRDAHRVFDRM-FE 177

Query: 499 PDHRIWGALLGA 510
           PD   W AL+ A
Sbjct: 178 PDVVSWSALVAA 189


>gi|147833409|emb|CAN68525.1| hypothetical protein VITISV_018083 [Vitis vinifera]
          Length = 1796

 Score =  305 bits (780), Expect = 6e-80,   Method: Compositional matrix adjust.
 Identities = 197/648 (30%), Positives = 312/648 (48%), Gaps = 93/648 (14%)

Query: 8   KSLVVHLTSSITK-----YSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEAR 62
           KS V+H   SI       YS+   + EA+ LF+ MP+RN  S+N M+ G+L++G   ++ 
Sbjct: 34  KSGVLHSVLSIGNRLLQMYSRCNSMREAQQLFEEMPKRNCFSWNTMIEGYLKSGSKGKSL 93

Query: 63  RLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNE 122
            LF+ MP ++  SW  +I G A  G +  AR+LF EMP +N ++WNSM+ G   NG   E
Sbjct: 94  ELFDSMPHKDAFSWNVVISGFAKEGNLEVARRLFNEMPWKNGIAWNSMIHGYACNGRPKE 153

Query: 123 ARKVFNSM---PIKNVISWNAMIAGYVECC-------------------------MMGEA 154
           A  +F  +   P++       ++A  V  C                         ++G +
Sbjct: 154 AVGLFKDLSLNPLERFCGDTFVLATVVGACTNLGALDCGKQIHARIVVDEVEFDSVLGSS 213

Query: 155 IV--------------LFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSW 200
           +V              +   M+E +  + +++ISGY   G + +   +F       VV W
Sbjct: 214 LVNLYGKCGDIDSANHVLNLMKEPDAFSLSALISGYASCGRMNDARRIFCLKSNXCVVLW 273

Query: 201 TAMIGGFAWNGFHKESLLLFIEMK---------------------GICDNG--------- 230
            +MI G+  N    E+L LF  M+                     GI D G         
Sbjct: 274 NSMISGYVANNEALEALELFNNMRRKGVQEDYSTFASVLSACSTLGIIDQGIQVHAHVYK 333

Query: 231 ----NNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAY 286
               N+  + S  ++++ Y +  R ++A  LF  +   D I   SMI  Y + G++ +A 
Sbjct: 334 VGFTNDIIIDS--ALVDMYSKCRRPDDACKLFSDLQAYDTILLNSMITVYSNCGRIDDAR 391

Query: 287 YLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATA 346
            +F  MP +  ++W +MI G  QN   +EA  LF EM   G+     + + +  A  + +
Sbjct: 392 QIFDTMPSKSLISWNSMIVGFSQNACPIEALDLFCEMNKLGLRMDKFSLAGVISACASIS 451

Query: 347 NIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVM 406
           +++LG QI         E D I+   L+  Y KCG++++   +F  M+  D V WNSM+M
Sbjct: 452 SLELGEQIFARATIIGLEFDQIISTSLVDFYCKCGLVEHGRKLFDRMMKSDEVPWNSMLM 511

Query: 407 GFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQ 466
           G++ +G   E L VF+ M   G  P  +TF+G+LSAC H GLV  G + F AM   Y I 
Sbjct: 512 GYATNGHGIEALNVFDQMRSVGVQPTDITFVGVLSACDHCGLVEEGRKWFYAMKLDYHIN 571

Query: 467 PGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAK 526
           PG EHY  M++L  RAG +++A   + ++P + D  +W ++L  C    GN  + +  AK
Sbjct: 572 PGIEHYSCMVDLYARAGLLEDAMNLIEQMPLKADTSMWSSVLRGC-VAHGNNILGKKVAK 630

Query: 527 RLLELDPLNAPAHVVLCNIYAAS---GRHVEEHKLRMDMGLKGVRKVP 571
           R+++LDP N+ A+V L  IYA     GR  +  KL  D      +K+P
Sbjct: 631 RIIDLDPENSGAYVQLSGIYATFEDWGRSAQVRKLMYD------KKIP 672



 Score =  279 bits (714), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 160/528 (30%), Positives = 279/528 (52%), Gaps = 47/528 (8%)

Query: 91   EARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCM 150
            ++ ++FE++ ++N++SWN  +   +R GEL  AR VF+ MP ++V+SWN MI+GYV   +
Sbjct: 763  DSLRVFEDIIDKNLISWNIFLKAFVRFGELERARDVFDEMPKRDVVSWNTMISGYVSFGL 822

Query: 151  MGEAIVLFEEMEE-------------------------------------RNVVTWTSMI 173
              +A   F EM++                                      NVV   S+I
Sbjct: 823  FDDAFRFFSEMQKAGIRPSGFTYSTLLSFVSSACRGKQIHASMIRNGVDLSNVVVGNSLI 882

Query: 174  SGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNC 233
              Y + G V+  + +F  M   +++SW ++I     +G+   +L  F+ M+ +   G + 
Sbjct: 883  GMYGKFGVVDYAFGVFITMEELDIISWNSLIWSCGKSGYQNLALRQFVLMRSV---GYSP 939

Query: 234  NVQSCNSMINGYIRFGRLEEAQNLFDTVPVR-----DEISWTSMIDGYLSVGQVSNAYYL 288
            +  + +++I        LE+ + +F  + +R     + I  ++ ID +    ++ ++  +
Sbjct: 940  DQFTVSTVITVCSNLQDLEKGEQIF-ALCIRVGFLSNSIVSSASIDLFSKCNRLEDSVRV 998

Query: 289  FHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANI 348
            F  +   D+V   AMIS    +     A  LF+      + P   T S++  A      +
Sbjct: 999  FEEIYQWDSVLCNAMISSYAWHGFGENALQLFVLTLRENLRPTEFTLSIVLSAVSILLPV 1058

Query: 349  DLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGF 408
            D G QIH +++K+  ESD+I+ + L+ MYAK G+ID+A   F+ + +RDL+SWN+M+MG 
Sbjct: 1059 DQGSQIHSLVVKSGLESDVIVASSLVEMYAKFGLIDSAMKTFAKIGARDLISWNTMIMGL 1118

Query: 409  SHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPG 468
            +++G  ++ L++F+ +L  G  P+ +T  G+L AC+  GLV  G  +F++M   Y + P 
Sbjct: 1119 AYNGRVSKALEIFKELLIGGPPPDEITLAGVLLACNVGGLVDEGLSIFSSMEKEYGVIPA 1178

Query: 469  PEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRL 528
             EHY  +++++ R GK+KEA + V  +P EP   IWG+LL AC    G+    E  A+R+
Sbjct: 1179 IEHYACIVDMMSRGGKLKEAMDIVELMPHEPSGLIWGSLLCACEI-YGDLRFTERVAERV 1237

Query: 529  LELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWL 576
            +EL+P ++  ++VL   Y   GR     ++   M  KGVRKV GCSW+
Sbjct: 1238 MELEPQSSLPYLVLAQAYEMRGRWESLVRVXRAMKEKGVRKVIGCSWI 1285



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 124/496 (25%), Positives = 214/496 (43%), Gaps = 61/496 (12%)

Query: 15  TSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNV- 73
           TS +  Y K G ++  + LF  M + + V +N+ML G+  NG   EA  +F++M    V 
Sbjct: 476 TSLVDFYCKCGLVEHGRKLFDRMMKSDEVPWNSMLMGYATNGHGIEALNVFDQMRSVGVQ 535

Query: 74  ---VSWTAMICGLADAGRVCEARKLFEEMP-----ERNVVSWNSMVVGLIRNGELNEARK 125
              +++  ++      G V E RK F  M         +  ++ MV    R G L +A  
Sbjct: 536 PTDITFVGVLSACDHCGLVEEGRKWFYAMKLDYHINPGIEHYSCMVDLYARAGLLEDAMN 595

Query: 126 VFNSMPIKNVIS-WNAMIAGYVECCMMGEAIV------LFEEMEERNVVTWTSMISGYC- 177
           +   MP+K   S W++++ G   C   G  I+         +++  N   +  +   Y  
Sbjct: 596 LIEQMPLKADTSMWSSVLRG---CVAHGNNILGKKVAKRIIDLDPENSGAYVQLSGIYAT 652

Query: 178 -----RAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKES----------LLLFIE 222
                R+ +V +     +++P+          G    +   KE           L L  E
Sbjct: 653 FEDWGRSAQVRK-LMYDKKIPKDTSFDIAGEEGXEGLSSETKEVTKMKQRQNLVLRLVAE 711

Query: 223 MKGICDN---------------------GNNCNVQSCNSMINGYIRFGRLEEAQNLFDTV 261
            K  CD                      G N +    N  ++ Y + G   ++  +F+ +
Sbjct: 712 KKRECDERDQKFMAARRTLLEFDMLIKVGFNTHTFLGNRCLDLYSQLGTGNDSLRVFEDI 771

Query: 262 PVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFM 321
             ++ ISW   +  ++  G++  A  +F  MP RD V+W  MISG V   LF +A   F 
Sbjct: 772 IDKNLISWNIFLKAFVRFGELERARDVFDEMPKRDVVSWNTMISGYVSFGLFDDAFRFFS 831

Query: 322 EMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESE-SDLILENCLISMYAKC 380
           EM+  G+ P   T+S L     +      G+QIH  +++   + S++++ N LI MY K 
Sbjct: 832 EMQKAGIRPSGFTYSTLLSFVSSACR---GKQIHASMIRNGVDLSNVVVGNSLIGMYGKF 888

Query: 381 GVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGIL 440
           GV+D A+ +F  M   D++SWNS++      G  N  L+ F  M   G  P+  T   ++
Sbjct: 889 GVVDYAFGVFITMEELDIISWNSLIWSCGKSGYQNLALRQFVLMRSVGYSPDQFTVSTVI 948

Query: 441 SACSHAGLVSRGWELF 456
           + CS+   + +G ++F
Sbjct: 949 TVCSNLQDLEKGEQIF 964



 Score = 75.1 bits (183), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 87/376 (23%), Positives = 154/376 (40%), Gaps = 53/376 (14%)

Query: 7    PKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNV----VSYNAMLSGFLQN---GRLS 59
            PK  VV   + I+ Y   G  D+A   F  M +  +     +Y+ +LS F+ +   G+  
Sbjct: 803  PKRDVVSWNTMISGYVSFGLFDDAFRFFSEMQKAGIRPSGFTYSTLLS-FVSSACRGKQI 861

Query: 60   EARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGE 119
             A  +   +   NVV   ++I      G V  A  +F  M E +++SWNS++    ++G 
Sbjct: 862  HASMIRNGVDLSNVVVGNSLIGMYGKFGVVDYAFGVFITMEELDIISWNSLIWSCGKSGY 921

Query: 120  LNEARKVFNSM------PIKNVISWNAMIAGYVECCMMGEAI--VLFEEMEERNVVTWTS 171
             N A + F  M      P +  +S    +   ++    GE I  +        N +  ++
Sbjct: 922  QNLALRQFVLMRSVGYSPDQFTVSTVITVCSNLQDLEKGEQIFALCIRVGFLSNSIVSSA 981

Query: 172  MISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEM-------- 223
             I  + +   +E+   +F  + + + V   AMI  +AW+GF + +L LF+          
Sbjct: 982  SIDLFSKCNRLEDSVRVFEEIYQWDSVLCNAMISSYAWHGFGENALQLFVLTLRENLRPT 1041

Query: 224  ------------------KG------ICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFD 259
                              +G      +  +G   +V   +S++  Y +FG ++ A   F 
Sbjct: 1042 EFTLSIVLSAVSILLPVDQGSQIHSLVVKSGLESDVIVASSLVEMYAKFGLIDSAMKTFA 1101

Query: 260  TVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNM----PDRDAVAWTAMISGLVQNELFVE 315
             +  RD ISW +MI G    G+VS A  +F  +    P  D +    ++       L  E
Sbjct: 1102 KIGARDLISWNTMIMGLAYNGRVSKALEIFKELLIGGPPPDEITLAGVLLACNVGGLVDE 1161

Query: 316  ATYLFMEM-RAHGVPP 330
               +F  M + +GV P
Sbjct: 1162 GLSIFSSMEKEYGVIP 1177



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 59/238 (24%), Positives = 104/238 (43%), Gaps = 23/238 (9%)

Query: 8    KSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEE 67
            +S V+  +S +  Y+K G ID A   F  +  R+++S+N M+ G   NGR+S+A  +F+E
Sbjct: 1074 ESDVIVASSLVEMYAKFGLIDSAMKTFAKIGARDLISWNTMIMGLAYNGRVSKALEIFKE 1133

Query: 68   M----PERNVVSWTAMICGLADAGRVCEARKLFEEM-PERNVVS----WNSMVVGLIRNG 118
            +    P  + ++   ++      G V E   +F  M  E  V+     +  +V  + R G
Sbjct: 1134 LLIGGPPPDEITLAGVLLACNVGGLVDEGLSIFSSMEKEYGVIPAIEHYACIVDMMSRGG 1193

Query: 119  ELNEARKVFNSMPIK-NVISWNAMIAG---YVECCMMGEAIVLFEEMEERNVVTWTSMIS 174
            +L EA  +   MP + + + W +++     Y +            E+E ++ + +  +  
Sbjct: 1194 KLKEAMDIVELMPHEPSGLIWGSLLCACEIYGDLRFTERVAERVMELEPQSSLPYLVLAQ 1253

Query: 175  GYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFH------KESLLLFIEMKGI 226
             Y   G  E    + R M  K V      + G +W G        KE+ LL I  K I
Sbjct: 1254 AYEMRGRWESLVRVXRAMKEKGV----RKVIGCSWIGIKNHVFVFKENQLLHIGGKDI 1307



 Score = 47.8 bits (112), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 41/191 (21%), Positives = 82/191 (42%), Gaps = 43/191 (22%)

Query: 357 VLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDL------------------ 398
           +L+K    +   L N  + +Y++ G  +++  +F +++ ++L                  
Sbjct: 735 MLIKVGFNTHTFLGNRCLDLYSQLGTGNDSLRVFEDIIDKNLISWNIFLKAFVRFGELER 794

Query: 399 -------------VSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSH 445
                        VSWN+M+ G+   GL ++  + F  M ++G  P+  T+  +LS  S 
Sbjct: 795 ARDVFDEMPKRDVVSWNTMISGYVSFGLFDDAFRFFSEMQKAGIRPSGFTYSTLLSFVSS 854

Query: 446 AGLVSRGWELFNAMF----DVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDH 501
           A    RG ++  +M     D+  +  G     S+I + G+ G +  A    + +  E D 
Sbjct: 855 A---CRGKQIHASMIRNGVDLSNVVVGN----SLIGMYGKFGVVDYAFGVFITME-ELDI 906

Query: 502 RIWGALLGACG 512
             W +L+ +CG
Sbjct: 907 ISWNSLIWSCG 917



 Score = 46.6 bits (109), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 50/236 (21%), Positives = 109/236 (46%), Gaps = 18/236 (7%)

Query: 41   NVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLF---- 96
            N +  +A +  F +  RL ++ R+FEE+ + + V   AMI   A  G    A +LF    
Sbjct: 975  NSIVSSASIDLFSKCNRLEDSVRVFEEIYQWDSVLCNAMISSYAWHGFGENALQLFVLTL 1034

Query: 97   ------EEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCM 150
                   E     V+S  S+++ + +  +++    V  S    +VI  ++++  Y +  +
Sbjct: 1035 RENLRPTEFTLSIVLSAVSILLPVDQGSQIHSL--VVKSGLESDVIVASSLVEMYAKFGL 1092

Query: 151  MGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRM----PRKNVVSWTAMIGG 206
            +  A+  F ++  R++++W +MI G    G V +   +F+ +    P  + ++   ++  
Sbjct: 1093 IDSAMKTFAKIGARDLISWNTMIMGLAYNGRVSKALEIFKELLIGGPPPDEITLAGVLLA 1152

Query: 207  FAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVP 262
                G   E L +F  M+   + G    ++    +++   R G+L+EA ++ + +P
Sbjct: 1153 CNVGGLVDEGLSIFSSMEK--EYGVIPAIEHYACIVDMMSRGGKLKEAMDIVELMP 1206


>gi|147838932|emb|CAN63659.1| hypothetical protein VITISV_008415 [Vitis vinifera]
          Length = 760

 Score =  305 bits (780), Expect = 6e-80,   Method: Compositional matrix adjust.
 Identities = 185/600 (30%), Positives = 311/600 (51%), Gaps = 49/600 (8%)

Query: 48  MLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSW 107
           +LS +  N   ++A  + + +PE NV S++ +I   +   +   A   F +M  R ++  
Sbjct: 54  LLSHYANNMCFADATLVLDLVPEPNVFSFSTLIYAFSKFHQFHHALSTFSQMLTRGLMPD 113

Query: 108 NSMVVGLIRN----GELNEARKVFNSMPIKNVIS----WNAMIAGYVECCMMGEAIVLFE 159
           N ++   ++       L  AR+V     +    S     ++++  Y++C  + +A  +F+
Sbjct: 114 NRVLPSAVKACAGLSALKPARQVHGIASVSGFDSDSFVQSSLVHMYIKCNQIRDAHRVFD 173

Query: 160 EMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMP----RKNVVSWTAMIGGFAWNGFHKE 215
            M E +VV+W+++++ Y R G V+E   LF  M     + N++SW  MI GF  +G + E
Sbjct: 174 RMFEPDVVSWSALVAAYARQGCVDEAKRLFSEMGDSGVQPNLISWNGMIAGFNHSGLYSE 233

Query: 216 SLLLFIEM--KGICDNGNNCNV----------------------------QSC--NSMIN 243
           ++L+F++M  +G   +G   +                               C  +++I+
Sbjct: 234 AVLMFLDMHLRGFEPDGTTISSVLPAVGDLEDLVMGILIHGYVIKQGLVSDKCVSSALID 293

Query: 244 GYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDR----DAVA 299
            Y +     E   +FD +   D  S  + I G    GQV ++  LF  + D+    + V+
Sbjct: 294 MYGKCSCTSEMSQVFDQMDHMDVGSCNAFIFGLSRNGQVESSLRLFRQLKDQGMELNVVS 353

Query: 300 WTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLM 359
           WT+MI+   QN   +EA  LF EM+  GV P + T   L  A G  A +  G+  HC  +
Sbjct: 354 WTSMIACCSQNGRDMEALELFREMQIAGVKPNSVTIPCLLPACGNIAALMHGKAAHCFSL 413

Query: 360 KTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLK 419
           +    +D+ + + LI MYAKCG I  +   F  + +++LV WN+++ G++ HG A E ++
Sbjct: 414 RRGISTDVYVGSALIDMYAKCGRIQASRICFDGIPTKNLVCWNAVIAGYAMHGKAKEAME 473

Query: 420 VFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLL 479
           +F+ M  SG  P+ ++F  +LSACS +GL   G   FN+M   Y I+   EHY  M+ LL
Sbjct: 474 IFDLMQRSGQKPDIISFTCVLSACSQSGLTEEGSYYFNSMSSKYGIEARVEHYACMVTLL 533

Query: 480 GRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAH 539
            RAGK+++A   + R+P  PD  +WGALL +C     N  + E AA++L EL+P N   +
Sbjct: 534 SRAGKLEQAYAMIRRMPVNPDACVWGALLSSCRV-HNNVSLGEVAAEKLFELEPSNPGNY 592

Query: 540 VVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEIL 599
           ++L NIYA+ G   E +++R  M  KG+RK PGCSW+     + M L+GDK   Q+ +I+
Sbjct: 593 ILLSNIYASKGMWNEVNRVRDMMKNKGLRKNPGCSWIEVKNKVHMLLAGDKSHPQMTQII 652



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 45/192 (23%), Positives = 85/192 (44%), Gaps = 5/192 (2%)

Query: 321 MEMRAHGVPPLNAT-FSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAK 379
           M + A  +  L++   ++L      TA++   RQ H  ++KT   +D  L   L+S YA 
Sbjct: 1   MSLSAQALALLDSVQHTILNCLNSTTASLSQTRQAHAHILKTGLFNDTHLATKLLSHYAN 60

Query: 380 CGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGI 439
                +A  +   +   ++ S+++++  FS     +  L  F  ML  G  P++      
Sbjct: 61  NMCFADATLVLDLVPEPNVFSFSTLIYAFSKFHQFHHALSTFSQMLTRGLMPDNRVLPSA 120

Query: 440 LSACSHAGLVS-RGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFE 498
           + AC  AGL + +     + +  V           S++++  +  +I++A     R+ FE
Sbjct: 121 VKAC--AGLSALKPARQVHGIASVSGFDSDSFVQSSLVHMYIKCNQIRDAHRVFDRM-FE 177

Query: 499 PDHRIWGALLGA 510
           PD   W AL+ A
Sbjct: 178 PDVVSWSALVAA 189


>gi|225435852|ref|XP_002265253.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Vitis vinifera]
          Length = 972

 Score =  305 bits (780), Expect = 6e-80,   Method: Compositional matrix adjust.
 Identities = 197/632 (31%), Positives = 308/632 (48%), Gaps = 63/632 (9%)

Query: 16  SSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNV-- 73
           S +  + K G +D A+  F+ +  ++V  +N M+SG+   G   +A +   +M    V  
Sbjct: 230 SILDMFIKCGRMDIARRFFEEIEFKDVFMWNIMVSGYTSKGEFKKALKCISDMKLSGVKP 289

Query: 74  --VSWTAMICGLADAGRVCEARKLFEEMP-----ERNVVSWNSMVVGLIRNGELNEARKV 126
             V+W A+I G A +G+  EA K F EM      + NVVSW +++ G  +NG   EA  V
Sbjct: 290 DQVTWNAIISGYAQSGQFEEASKYFLEMGGLKDFKPNVVSWTALIAGSEQNGYDFEALSV 349

Query: 127 FNSMPIKNVISWNAMIAGYVECCM------MGEAI----VLFEEMEERNVVTWTSMISGY 176
           F  M ++ V   +  IA  V  C        G  I    +  EE++  +++   S++  Y
Sbjct: 350 FRKMVLEGVKPNSITIASAVSACTNLSLLRHGREIHGYCIKVEELDS-DLLVGNSLVDYY 408

Query: 177 CRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQ 236
            +   VE     F  + + ++VSW AM+ G+A  G H+E++ L  EMK     G   ++ 
Sbjct: 409 AKCRSVEVARRKFGMIKQTDLVSWNAMLAGYALRGSHEEAIELLSEMKF---QGIEPDII 465

Query: 237 SCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSV-GQVSN----------- 284
           + N ++ G+ ++G  + A   F  +        T+ I G L+  GQV N           
Sbjct: 466 TWNGLVTGFTQYGDGKAALEFFQRMHSMGMDPNTTTISGALAACGQVRNLKLGKEIHGYV 525

Query: 285 ---------------------------AYYLFHNMPDRDAVAWTAMISGLVQNELFVEAT 317
                                      A  +F  +  RD V W ++IS   Q+   V A 
Sbjct: 526 LRNHIELSTGVGSALISMYSGCDSLEVACSVFSELSTRDVVVWNSIISACAQSGRSVNAL 585

Query: 318 YLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMY 377
            L  EM    V     T      A    A +  G++IH  +++   ++   + N LI MY
Sbjct: 586 DLLREMNLSNVEVNTVTMVSALPACSKLAALRQGKEIHQFIIRCGLDTCNFILNSLIDMY 645

Query: 378 AKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFL 437
            +CG I  +  IF  M  RDLVSWN M+  +  HG   + + +F+     G  PN +TF 
Sbjct: 646 GRCGSIQKSRRIFDLMPQRDLVSWNVMISVYGMHGFGMDAVNLFQQFRTMGLKPNHITFT 705

Query: 438 GILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPF 497
            +LSACSH+GL+  GW+ F  M   Y + P  E Y  M++LL RAG+  E  EF+ ++PF
Sbjct: 706 NLLSACSHSGLIEEGWKYFKMMKTEYAMDPAVEQYACMVDLLSRAGQFNETLEFIEKMPF 765

Query: 498 EPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHK 557
           EP+  +WG+LLGAC     N ++AE+AA+ L EL+P ++  +V++ NIY+A+GR  +  K
Sbjct: 766 EPNAAVWGSLLGACRI-HCNPDLAEYAARYLFELEPQSSGNYVLMANIYSAAGRWEDAAK 824

Query: 558 LRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGD 589
           +R  M  +GV K PGCSW+     +  F+ GD
Sbjct: 825 IRCLMKERGVTKPPGCSWIEVKRKLHSFVVGD 856



 Score =  189 bits (481), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 150/554 (27%), Positives = 248/554 (44%), Gaps = 95/554 (17%)

Query: 48  MLSGFLQNGRLSEARRLFEEMPERNVVSWTA---MICGLADAGRVCEA------------ 92
           +L  + Q G + +ARR+F++M ERNV SWTA   M CGL D     +             
Sbjct: 130 LLEVYCQTGCVEDARRMFDKMSERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPD 189

Query: 93  ----RKLFEEMPE-------RNVVSW--------NSMVVG-----LIRNGELNEARKVFN 128
                K+F+   E       ++V  +        NS V G      I+ G ++ AR+ F 
Sbjct: 190 HFVFPKVFKACSELKNYRVGKDVYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFE 249

Query: 129 SMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNV----VTWTSMISGYCRAGEVEE 184
            +  K+V  WN M++GY       +A+    +M+   V    VTW ++ISGY ++G+ EE
Sbjct: 250 EIEFKDVFMWNIMVSGYTSKGEFKKALKCISDMKLSGVKPDQVTWNAIISGYAQSGQFEE 309

Query: 185 GYCLFRRMP-----RKNVVSWTAMIGGFAWNGFHKESLLLFIEM--KGICDNGNN--CNV 235
               F  M      + NVVSWTA+I G   NG+  E+L +F +M  +G+  N       V
Sbjct: 310 ASKYFLEMGGLKDFKPNVVSWTALIAGSEQNGYDFEALSVFRKMVLEGVKPNSITIASAV 369

Query: 236 QSC-----------------------------NSMINGYIRFGRLEEAQNLFDTVPVRDE 266
            +C                             NS+++ Y +   +E A+  F  +   D 
Sbjct: 370 SACTNLSLLRHGREIHGYCIKVEELDSDLLVGNSLVDYYAKCRSVEVARRKFGMIKQTDL 429

Query: 267 ISWTSMIDGYLSVGQVSNAYYLFHNMP----DRDAVAWTAMISGLVQNELFVEATYLFME 322
           +SW +M+ GY   G    A  L   M     + D + W  +++G  Q      A   F  
Sbjct: 430 VSWNAMLAGYALRGSHEEAIELLSEMKFQGIEPDIITWNGLVTGFTQYGDGKAALEFFQR 489

Query: 323 MRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGV 382
           M + G+ P   T S    A G   N+ LG++IH  +++   E    + + LISMY+ C  
Sbjct: 490 MHSMGMDPNTTTISGALAACGQVRNLKLGKEIHGYVLRNHIELSTGVGSALISMYSGCDS 549

Query: 383 IDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSA 442
           ++ A ++FS + +RD+V WNS++   +  G +   L +   M  S    N+VT +  L A
Sbjct: 550 LEVACSVFSELSTRDVVVWNSIISACAQSGRSVNALDLLREMNLSNVEVNTVTMVSALPA 609

Query: 443 CSHAGLVSRGWELFNAMFDVYKIQPGPE--HYV--SMINLLGRAGKIKEAEEFVLRLPFE 498
           CS    + +G E+       + I+ G +  +++  S+I++ GR G I+++      +P +
Sbjct: 610 CSKLAALRQGKEIHQ-----FIIRCGLDTCNFILNSLIDMYGRCGSIQKSRRIFDLMP-Q 663

Query: 499 PDHRIWGALLGACG 512
            D   W  ++   G
Sbjct: 664 RDLVSWNVMISVYG 677



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 62/242 (25%), Positives = 111/242 (45%), Gaps = 3/242 (1%)

Query: 235 VQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPD 294
           +Q C  + N  +R G    AQ + + V V  E   + +++ Y   G V +A  +F  M +
Sbjct: 96  LQKCRKLYN--LRLGFQVHAQLVVNGVDVC-EFLGSRLLEVYCQTGCVEDARRMFDKMSE 152

Query: 295 RDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQI 354
           R+  +WTA++        + E   LF  M   GV P +  F  +F A     N  +G+ +
Sbjct: 153 RNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVFKACSELKNYRVGKDV 212

Query: 355 HCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLA 414
           +  ++    E +  ++  ++ M+ KCG +D A   F  +  +D+  WN MV G++  G  
Sbjct: 213 YDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFKDVFMWNIMVSGYTSKGEF 272

Query: 415 NETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVS 474
            + LK    M  SG  P+ VT+  I+S  + +G      + F  M  +   +P    + +
Sbjct: 273 KKALKCISDMKLSGVKPDQVTWNAIISGYAQSGQFEEASKYFLEMGGLKDFKPNVVSWTA 332

Query: 475 MI 476
           +I
Sbjct: 333 LI 334



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 49/185 (26%), Positives = 88/185 (47%), Gaps = 13/185 (7%)

Query: 14  LTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMP---- 69
           L S I  Y + G I +++ +F LMPQR++VS+N M+S +  +G   +A  LF++      
Sbjct: 638 LNSLIDMYGRCGSIQKSRRIFDLMPQRDLVSWNVMISVYGMHGFGMDAVNLFQQFRTMGL 697

Query: 70  ERNVVSWTAMICGLADAGRVCEARKLFEEMP-----ERNVVSWNSMVVGLIRNGELNEAR 124
           + N +++T ++   + +G + E  K F+ M      +  V  +  MV  L R G+ NE  
Sbjct: 698 KPNHITFTNLLSACSHSGLIEEGWKYFKMMKTEYAMDPAVEQYACMVDLLSRAGQFNETL 757

Query: 125 KVFNSMPIK-NVISWNAMIAGYVECC---MMGEAIVLFEEMEERNVVTWTSMISGYCRAG 180
           +    MP + N   W +++      C   +   A     E+E ++   +  M + Y  AG
Sbjct: 758 EFIEKMPFEPNAAVWGSLLGACRIHCNPDLAEYAARYLFELEPQSSGNYVLMANIYSAAG 817

Query: 181 EVEEG 185
             E+ 
Sbjct: 818 RWEDA 822


>gi|357447703|ref|XP_003594127.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|124365519|gb|ABN09753.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355483175|gb|AES64378.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 727

 Score =  305 bits (780), Expect = 6e-80,   Method: Compositional matrix adjust.
 Identities = 208/606 (34%), Positives = 307/606 (50%), Gaps = 53/606 (8%)

Query: 16  SSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVS 75
           S I  Y+K G I  A+ LF      + VS N M+SG+++NG++  AR+LF+ MP +  VS
Sbjct: 93  SLINMYAKCGDIKNAQLLFDGFATLDSVSCNIMVSGYVRNGQIDNARKLFDVMPNKGCVS 152

Query: 76  WTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRN----GELNEARKVFNSMP 131
           +T MI G    G   EA ++F++M    VV  +  +V +I      GE+   R V + + 
Sbjct: 153 YTTMIMGFVQNGFFREALEVFKDMRSCGVVPNDLTLVNVISACSHLGEVLNCRMV-HGLV 211

Query: 132 IKN------VISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEG 185
           +K       ++S N M A Y  C  + EA  LF+EM ERN+VTW  M++GY + G V+E 
Sbjct: 212 VKMFVVGLVIVSTNLMHA-YCLCSGVREARRLFDEMPERNLVTWNVMLNGYAKTGLVDEA 270

Query: 186 YCLFRRMPRKNVVSWTAMIGGFAWNGFHKESL---------------LLFIEMKGICDNG 230
             LF  +  K+V+SW  MI G+   G  +E+L               ++ + +   C  G
Sbjct: 271 RELFDGICDKDVISWGTMIDGYIQKGRLREALEIYRAMLQTGHGPNEVMIVNLVSACGRG 330

Query: 231 N-----------------NCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEI-SWTSM 272
                             +C      ++I  Y   G ++ A   F+ V V+D + SW ++
Sbjct: 331 TAIVDGWQLHGTVVKRGFDCYNFIQTTIIYFYAACGMMDLACLQFE-VGVKDHLESWNAL 389

Query: 273 IDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLN 332
             G++  G + +A   F  M  RD  +W+ MISG  Q+E    A  LF +M A G+ P  
Sbjct: 390 TAGFIKNGMMDHALKTFDKMHVRDVFSWSTMISGYAQSEHPKMALELFHKMLAGGIKPNE 449

Query: 333 ATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSN 392
            T   +F A      +  G+  H  +       +  L   LI MYAKCG I++A   F+ 
Sbjct: 450 VTMVSVFSAIATLGTLQEGKLAHEYMRSESIPFNDNLRAALIDMYAKCGSINSALQFFNQ 509

Query: 393 MVSRDLVS----WNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGL 448
           +  RD VS    WN+++ G + HG A+  L+VF  M      PN +TF+G+LSAC HAGL
Sbjct: 510 I--RDEVSSVSPWNAIICGLASHGHASMCLEVFSDMQRFHIKPNPITFIGVLSACCHAGL 567

Query: 449 VSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALL 508
           V  G  +F  M   Y ++P  +HY  MI++LGRAG ++EAEE +  +P E D  IWG LL
Sbjct: 568 VESGKRIFKTMKSAYNVEPDIKHYGCMIDILGRAGLLEEAEEMIRSMPMEADIVIWGTLL 627

Query: 509 GACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVR 568
            AC    GN  I E AA+ L  L P +    V+L NIYA +G+  E   +R  M  + + 
Sbjct: 628 AACR-THGNVNIGERAAENLARLAPSHGGGKVLLSNIYANAGKWEEVSFVRSVMQGQTMD 686

Query: 569 KVPGCS 574
           + PG S
Sbjct: 687 REPGYS 692



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 106/420 (25%), Positives = 203/420 (48%), Gaps = 15/420 (3%)

Query: 10  LVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMP 69
           LV+  T+ +  Y     + EA+ LF  MP+RN+V++N ML+G+ + G + EAR LF+ + 
Sbjct: 219 LVIVSTNLMHAYCLCSGVREARRLFDEMPERNLVTWNVMLNGYAKTGLVDEARELFDGIC 278

Query: 70  ERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLI----RNGELNEARK 125
           +++V+SW  MI G    GR+ EA +++  M +        M+V L+    R   + +  +
Sbjct: 279 DKDVISWGTMIDGYIQKGRLREALEIYRAMLQTGHGPNEVMIVNLVSACGRGTAIVDGWQ 338

Query: 126 VFNSMPIKNVISWN----AMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGE 181
           +  ++  +    +N     +I  Y  C MM  A + FE   + ++ +W ++ +G+ + G 
Sbjct: 339 LHGTVVKRGFDCYNFIQTTIIYFYAACGMMDLACLQFEVGVKDHLESWNALTAGFIKNGM 398

Query: 182 VEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSM 241
           ++     F +M  ++V SW+ MI G+A +   K +L LF +M       N   + S  S 
Sbjct: 399 MDHALKTFDKMHVRDVFSWSTMISGYAQSEHPKMALELFHKMLAGGIKPNEVTMVSVFSA 458

Query: 242 IN--GYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDR--DA 297
           I   G ++ G+L       +++P  D +   ++ID Y   G +++A   F+ + D     
Sbjct: 459 IATLGTLQEGKLAHEYMRSESIPFNDNLR-AALIDMYAKCGSINSALQFFNQIRDEVSSV 517

Query: 298 VAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCV 357
             W A+I GL  +        +F +M+   + P   TF  +  A      ++ G++I   
Sbjct: 518 SPWNAIICGLASHGHASMCLEVFSDMQRFHIKPNPITFIGVLSACCHAGLVESGKRIFKT 577

Query: 358 LMKTES-ESDLILENCLISMYAKCGVIDNAYNIFSNM-VSRDLVSWNSMVMGFSHHGLAN 415
           +    + E D+    C+I +  + G+++ A  +  +M +  D+V W +++     HG  N
Sbjct: 578 MKSAYNVEPDIKHYGCMIDILGRAGLLEEAEEMIRSMPMEADIVIWGTLLAACRTHGNVN 637



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 79/260 (30%), Positives = 124/260 (47%), Gaps = 35/260 (13%)

Query: 239 NSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAV 298
           NS+IN Y + G ++ AQ LFD     D +S   M+ GY+  GQ+ NA  LF  MP++  V
Sbjct: 92  NSLINMYAKCGDIKNAQLLFDGFATLDSVSCNIMVSGYVRNGQIDNARKLFDVMPNKGCV 151

Query: 299 AWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVL 358
           ++T MI G VQN  F EA  +F +MR+ GV P + T   +  A      +   R +H ++
Sbjct: 152 SYTTMIMGFVQNGFFREALEVFKDMRSCGVVPNDLTLVNVISACSHLGEVLNCRMVHGLV 211

Query: 359 MKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLAN--- 415
           +K      +I+   L+  Y  C  +  A  +F  M  R+LV+WN M+ G++  GL +   
Sbjct: 212 VKMFVVGLVIVSTNLMHAYCLCSGVREARRLFDEMPERNLVTWNVMLNGYAKTGLVDEAR 271

Query: 416 ----------------------------ETLKVFESMLESGTHPNSVTFLGILSACSHAG 447
                                       E L+++ +ML++G  PN V  + ++SAC    
Sbjct: 272 ELFDGICDKDVISWGTMIDGYIQKGRLREALEIYRAMLQTGHGPNEVMIVNLVSACGRGT 331

Query: 448 LVSRGWELFNAM----FDVY 463
            +  GW+L   +    FD Y
Sbjct: 332 AIVDGWQLHGTVVKRGFDCY 351



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 45/133 (33%), Positives = 64/133 (48%), Gaps = 31/133 (23%)

Query: 348 IDLGRQIHCVLMKTESESDLILENCLISMYAKC--------------------------- 380
           I  GRQIH ++ K     +  ++N LI+MYAKC                           
Sbjct: 69  ISQGRQIHSLIFKLGLHFNTFIQNSLINMYAKCGDIKNAQLLFDGFATLDSVSCNIMVSG 128

Query: 381 ----GVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTF 436
               G IDNA  +F  M ++  VS+ +M+MGF  +G   E L+VF+ M   G  PN +T 
Sbjct: 129 YVRNGQIDNARKLFDVMPNKGCVSYTTMIMGFVQNGFFREALEVFKDMRSCGVVPNDLTL 188

Query: 437 LGILSACSHAGLV 449
           + ++SACSH G V
Sbjct: 189 VNVISACSHLGEV 201


>gi|168003497|ref|XP_001754449.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162694551|gb|EDQ80899.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 723

 Score =  305 bits (780), Expect = 7e-80,   Method: Compositional matrix adjust.
 Identities = 185/607 (30%), Positives = 312/607 (51%), Gaps = 25/607 (4%)

Query: 15  TSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQN-GRLSEARR-------LFE 66
           +  ++   K G + EA  +   M  +    Y+ +  G LQ   RL    +       + +
Sbjct: 16  SRDVSVLCKTGRLKEALGIMNTMILQGTRVYSDVFRGLLQECARLRSLEQGREVHAAILK 75

Query: 67  EMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKV 126
              + N      ++   A  G + +AR++F+ + +RN+VSW +M+   +   +  EA K 
Sbjct: 76  SGIQPNRYLENTLLSMYAKCGSLTDARRVFDSIRDRNIVSWTAMIEAFVAGNKNLEAFKC 135

Query: 127 FNSMPI----KNVISWNAMIAGYV--ECCMMGEAI--VLFEEMEERNVVTWTSMISGYCR 178
           + +M +     + +++ +++  +   E   +G+ +   + E   E      TS++  Y +
Sbjct: 136 YETMKLAGCKPDKVTFVSLLNAFTNPELLQLGQKVHMEIVEAGLELEPRVGTSLVGMYAK 195

Query: 179 AGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSC 238
            G++ +   +F R+P KNVV+WT +I G+A  G    +L L   M+      N     S 
Sbjct: 196 CGDISKARVIFDRLPEKNVVTWTLLIAGYAQQGQVDVALELLETMQQAEVAPNKITFAS- 254

Query: 239 NSMINGYIRFGRLEEAQNLFDTVPV----RDEISWTSMIDGYLSVGQVSNAYYLFHNMPD 294
             ++ G      LE  + +   +      R+     S+I  Y   G +  A  LF ++P 
Sbjct: 255 --ILQGCTTPAALEHGKKVHRYIIQSGYGRELWVVNSLITMYCKCGGLEEARKLFSDLPH 312

Query: 295 RDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQI 354
           RD V WTAM++G  Q     EA  LF  M+  G+ P   TF+ +  +  + A +  G++I
Sbjct: 313 RDVVTWTAMVTGYAQLGFHDEAINLFRRMQQQGIKPDKMTFTSVLTSCSSPAFLQEGKRI 372

Query: 355 HCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGF-SHHGL 413
           H  L+      D+ L++ L+SMYAKCG +D+A  +F+ M  R++V+W +++ G  + HG 
Sbjct: 373 HQQLVHAGYNLDVYLQSALVSMYAKCGSMDDASLVFNQMSERNVVAWTAIITGCCAQHGR 432

Query: 414 ANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYV 473
             E L+ F+ M + G  P+ VTF  +LSAC+H GLV  G + F +M+  Y I+P  EHY 
Sbjct: 433 CREALEYFDQMKKQGIKPDKVTFTSVLSACTHVGLVEEGRKHFRSMYLDYGIKPMVEHYS 492

Query: 474 SMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDP 533
             ++LLGRAG ++EAE  +L +PF P   +WGALL AC     + E  E AA+ +L+LDP
Sbjct: 493 CFVDLLGRAGHLEEAENVILSMPFIPGPSVWGALLSACRV-HSDVERGERAAENVLKLDP 551

Query: 534 LNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPA 593
            +  A+V L +IYAA+GR+ +  K+R  M  + V K PG SW+  +G + +F   DK   
Sbjct: 552 DDDGAYVALSSIYAAAGRYEDAEKVRQVMEKRDVVKEPGQSWIEVDGKVHVFHVEDKSHP 611

Query: 594 QVAEILL 600
           +  +I +
Sbjct: 612 ESEQIYV 618



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 59/195 (30%), Positives = 109/195 (55%), Gaps = 19/195 (9%)

Query: 14  LTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNV 73
           + S IT Y K G ++EA+ LF  +P R+VV++ AM++G+ Q G   EA  LF  M ++ +
Sbjct: 287 VNSLITMYCKCGGLEEARKLFSDLPHRDVVTWTAMVTGYAQLGFHDEAINLFRRMQQQGI 346

Query: 74  ----VSWTAMICGLADAGRVCEARKLFEEMPER----NVVSWNSMVVGLIRNGELNEARK 125
               +++T+++   +    + E +++ +++       +V   +++V    + G +++A  
Sbjct: 347 KPDKMTFTSVLTSCSSPAFLQEGKRIHQQLVHAGYNLDVYLQSALVSMYAKCGSMDDASL 406

Query: 126 VFNSMPIKNVISWNAMIAGYVECCMMG----EAIVLFEEMEERNV----VTWTSMISGYC 177
           VFN M  +NV++W A+I G   CC       EA+  F++M+++ +    VT+TS++S   
Sbjct: 407 VFNQMSERNVVAWTAIITG---CCAQHGRCREALEYFDQMKKQGIKPDKVTFTSVLSACT 463

Query: 178 RAGEVEEGYCLFRRM 192
             G VEEG   FR M
Sbjct: 464 HVGLVEEGRKHFRSM 478


>gi|449461477|ref|XP_004148468.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g39530-like [Cucumis sativus]
 gi|449515698|ref|XP_004164885.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g39530-like [Cucumis sativus]
          Length = 837

 Score =  304 bits (779), Expect = 7e-80,   Method: Compositional matrix adjust.
 Identities = 195/648 (30%), Positives = 330/648 (50%), Gaps = 78/648 (12%)

Query: 15  TSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVV 74
           TS +  Y+K G ID+A+ +F  +  +  V++ A+++G+ ++GR   + +LF  M E NV+
Sbjct: 181 TSLVVLYAKHGEIDKARLVFDGLVLKTPVTWTAIITGYTKSGRSEVSLQLFNLMMESNVI 240

Query: 75  SWTAMICGLADA---------GRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARK 125
               ++  + +A         G+   A  L  E  + +V ++N ++    + G +   + 
Sbjct: 241 PDKYVLSSILNACSVLGYLKGGKQIHAYVLRSE-TKMDVSTYNVLIDFYTKCGRVKAGKA 299

Query: 126 VFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEM------------------------ 161
           +F+ + +KN+ISW  MIAGY++     EA+ L  EM                        
Sbjct: 300 LFDRLDVKNIISWTTMIAGYMQNSYDWEAVELVGEMFRMGWKPDEYACSSVLTSCGSVDA 359

Query: 162 ----------------EERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIG 205
                           E  N VT  ++I  Y +   +++   +F  +   +VV + AMI 
Sbjct: 360 LQHGRQIHSYVIKVCLEHDNFVT-NALIDMYSKCNALDDAKRVFDVVTCHSVVYYNAMIE 418

Query: 206 GFAWNGFHKESLLLFIEMK------------GICDNGNNCNVQSCNSMINGYI-RFGRLE 252
           G++  G+   +L +F EM+             +            +  I+G I ++G   
Sbjct: 419 GYSRQGYLCGALEVFQEMRLKHVSPSFLTFVSLLGLSAALLCLQLSKQIHGLIIKYG--- 475

Query: 253 EAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNEL 312
                F      D+ + +++ID Y     + +A Y+F    ++D V W ++ SG      
Sbjct: 476 -----FSL----DKFTSSALIDVYSKCSCIRDARYVFEGTTNKDIVVWNSLFSGYNLQLK 526

Query: 313 FVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENC 372
             EA  L+ +++     P   TF+ L  AA   A++  G+Q H  +MK   ESD  + N 
Sbjct: 527 SEEAFKLYSDLQLSRERPNEFTFAALTTAASILASLPHGQQFHNQVMKMGLESDPFITNA 586

Query: 373 LISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPN 432
           L+ MYAKCG ++ A  IFS+ V +D   WNSM+  ++ HG   E L++FE+M+ +  +PN
Sbjct: 587 LVDMYAKCGSVEEAEKIFSSSVWKDTACWNSMISMYAQHGKVEEALRMFETMVSNNINPN 646

Query: 433 SVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFV 492
            VTF+ +LSACSH G V  G + +N+M   Y I+PG EHY S++ LLGRAG++ EA EF+
Sbjct: 647 YVTFVSVLSACSHVGFVEDGLQHYNSMAR-YGIEPGIEHYASVVTLLGRAGRLTEAREFI 705

Query: 493 LRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRH 552
            ++   P   +W +LL AC    GN E+A+HAA+  + +DP+++ ++V+L NI+A+ G  
Sbjct: 706 EKMTIRPAALVWRSLLSACRVF-GNVELAKHAAEMAISIDPMDSGSYVMLSNIFASKGMW 764

Query: 553 VEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEILL 600
            +  +LR+ M + GV K PG SW+  NG + +F+S DK+  +   I L
Sbjct: 765 GDVKRLRLKMDVNGVVKEPGQSWIEVNGEVHIFVSRDKVHDETDLIYL 812



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 136/526 (25%), Positives = 230/526 (43%), Gaps = 64/526 (12%)

Query: 21  YSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMI 80
           Y K G + +A  LF  MP RN+VS+++++S + Q G   +A   F E     V      I
Sbjct: 85  YFKIGSVFDAGTLFDKMPNRNLVSWSSVVSMYTQLGYNEKALLYFLEFQRTCVDKLNEYI 144

Query: 81  CGLADAGRVCEARKLFEEMPERNVVSW-------------NSMVVGLIRNGELNEARKVF 127
             LA   R C  R   E  P   V S+              S+VV   ++GE+++AR VF
Sbjct: 145 --LASIIRACVQRDGGE--PGSQVHSYVIKSGFGEDVYVGTSLVVLYAKHGEIDKARLVF 200

Query: 128 NSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVV-------------------- 167
           + + +K  ++W A+I GY +      ++ LF  M E NV+                    
Sbjct: 201 DGLVLKTPVTWTAIITGYTKSGRSEVSLQLFNLMMESNVIPDKYVLSSILNACSVLGYLK 260

Query: 168 -------------------TWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFA 208
                              T+  +I  Y + G V+ G  LF R+  KN++SWT MI G+ 
Sbjct: 261 GGKQIHAYVLRSETKMDVSTYNVLIDFYTKCGRVKAGKALFDRLDVKNIISWTTMIAGYM 320

Query: 209 WNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPV----R 264
            N +  E++ L  EM  +   G   +  +C+S++        L+  + +   V       
Sbjct: 321 QNSYDWEAVELVGEMFRM---GWKPDEYACSSVLTSCGSVDALQHGRQIHSYVIKVCLEH 377

Query: 265 DEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMR 324
           D     ++ID Y     + +A  +F  +     V + AMI G  +      A  +F EMR
Sbjct: 378 DNFVTNALIDMYSKCNALDDAKRVFDVVTCHSVVYYNAMIEGYSRQGYLCGALEVFQEMR 437

Query: 325 AHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVID 384
              V P   TF  L G + A   + L +QIH +++K     D    + LI +Y+KC  I 
Sbjct: 438 LKHVSPSFLTFVSLLGLSAALLCLQLSKQIHGLIIKYGFSLDKFTSSALIDVYSKCSCIR 497

Query: 385 NAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACS 444
           +A  +F    ++D+V WNS+  G++    + E  K++  +  S   PN  TF  + +A S
Sbjct: 498 DARYVFEGTTNKDIVVWNSLFSGYNLQLKSEEAFKLYSDLQLSRERPNEFTFAALTTAAS 557

Query: 445 HAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEE 490
               +  G +  N +  +  ++  P    +++++  + G ++EAE+
Sbjct: 558 ILASLPHGQQFHNQVMKM-GLESDPFITNALVDMYAKCGSVEEAEK 602



 Score =  112 bits (281), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 68/295 (23%), Positives = 139/295 (47%), Gaps = 6/295 (2%)

Query: 172 MISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGN 231
           ++  Y + G V +   LF +MP +N+VSW++++  +   G+++++LL F+E +  C +  
Sbjct: 81  LLHSYFKIGSVFDAGTLFDKMPNRNLVSWSSVVSMYTQLGYNEKALLYFLEFQRTCVDKL 140

Query: 232 NCNVQSCNSMINGYIRFGRLEEAQNLFDTVPV----RDEISWTSMIDGYLSVGQVSNAYY 287
           N  + +  S+I   ++    E    +   V       D    TS++  Y   G++  A  
Sbjct: 141 NEYILA--SIIRACVQRDGGEPGSQVHSYVIKSGFGEDVYVGTSLVVLYAKHGEIDKARL 198

Query: 288 LFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATAN 347
           +F  +  +  V WTA+I+G  ++     +  LF  M    V P     S +  A      
Sbjct: 199 VFDGLVLKTPVTWTAIITGYTKSGRSEVSLQLFNLMMESNVIPDKYVLSSILNACSVLGY 258

Query: 348 IDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMG 407
           +  G+QIH  ++++E++ D+   N LI  Y KCG +     +F  +  ++++SW +M+ G
Sbjct: 259 LKGGKQIHAYVLRSETKMDVSTYNVLIDFYTKCGRVKAGKALFDRLDVKNIISWTTMIAG 318

Query: 408 FSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDV 462
           +  +    E +++   M   G  P+      +L++C     +  G ++ + +  V
Sbjct: 319 YMQNSYDWEAVELVGEMFRMGWKPDEYACSSVLTSCGSVDALQHGRQIHSYVIKV 373



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 55/240 (22%), Positives = 97/240 (40%), Gaps = 46/240 (19%)

Query: 352 RQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHH 411
           R++HC ++    + D+ L N L+  Y K G + +A  +F  M +R+LVSW+S+V  ++  
Sbjct: 60  RKVHCQVVLWGLQYDVFLSNLLLHSYFKIGSVFDAGTLFDKMPNRNLVSWSSVVSMYTQL 119

Query: 412 GLANETLKVFESMLESGTHP-NSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPE 470
           G   + L  F     +     N      I+ AC        G ++ +    V K   G +
Sbjct: 120 GYNEKALLYFLEFQRTCVDKLNEYILASIIRACVQRDGGEPGSQVHSY---VIKSGFGED 176

Query: 471 HYV--SMINLLGRAGKIKEA----EEFVLRLPFE-------------------------- 498
            YV  S++ L  + G+I +A    +  VL+ P                            
Sbjct: 177 VYVGTSLVVLYAKHGEIDKARLVFDGLVLKTPVTWTAIITGYTKSGRSEVSLQLFNLMME 236

Query: 499 ----PDHRIWGALLGAC---GFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGR 551
               PD  +  ++L AC   G+ +G  +I  +  +   ++D      + VL + Y   GR
Sbjct: 237 SNVIPDKYVLSSILNACSVLGYLKGGKQIHAYVLRSETKMD---VSTYNVLIDFYTKCGR 293


>gi|242061948|ref|XP_002452263.1| hypothetical protein SORBIDRAFT_04g022670 [Sorghum bicolor]
 gi|241932094|gb|EES05239.1| hypothetical protein SORBIDRAFT_04g022670 [Sorghum bicolor]
          Length = 603

 Score =  304 bits (779), Expect = 7e-80,   Method: Compositional matrix adjust.
 Identities = 189/533 (35%), Positives = 285/533 (53%), Gaps = 30/533 (5%)

Query: 87  GRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYV 146
           GR   AR +   +    ++S N +V    R      A   F+ +P KN  S+N ++A  +
Sbjct: 55  GRAVHARLVKTALTSHTLLS-NRLVALYSRLPSSAAAVAAFDDLPHKNAHSYNTLLAALL 113

Query: 147 E-CCMMGEAIVLFEEM--EERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVS---- 199
                  +A+ LF+ M  + RN+V++ +++S     G   E   +  R+ R   +     
Sbjct: 114 RRPDTFPDALHLFDTMPADARNLVSYNTLMSSLVHHGRQAEALRVVARLARDRFLGPGLA 173

Query: 200 ---WTAMIGGFAWNGFHKESLLLFIEMKG-ICDNGNNCNVQSCNSMINGYIRFGRLEEAQ 255
              +T +    A  G      L   EM G +  +G    V   N+M+N Y +  R+EEA+
Sbjct: 174 MDRFTVVSVATACAGIRAARPLR--EMHGAVVVSGMELTVIMANAMVNAYSKAWRVEEAR 231

Query: 256 NLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVE 315
           +LFD + +RD ++WTSMI GY  V ++  A  +F  MPD+D VAWTA+ISG  QN     
Sbjct: 232 HLFDQISIRDNVTWTSMISGYCQVKKLDEALQVFDMMPDKDRVAWTALISGHEQNGEEDT 291

Query: 316 ATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESD---LILENC 372
           A  LF  M A GV P       + GA      +  G+++HC +++    SD   + + N 
Sbjct: 292 ALELFERMLAEGVSPTTFALVSVLGACAKLGLVTRGKELHCSILRRSIGSDPFNIFIHNA 351

Query: 373 LISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPN 432
           L+ MY+KCG +  A  +F  M  RD +SWNSMV GFSH+GL  ++L +FE ML +G  P 
Sbjct: 352 LVDMYSKCGDMTAAMAVFHRMPERDFISWNSMVTGFSHNGLGKQSLAIFEEMLVAGVRPT 411

Query: 433 SVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFV 492
            VTFL +L+ACSH+GLVS G  +  +M D + ++P  EHY + I+ LGR  +++EA EF+
Sbjct: 412 HVTFLAVLTACSHSGLVSNGRLILESMED-HGVEPRAEHYAAFIDALGRNRQLEEAIEFI 470

Query: 493 LRLPFEPDHRI-------WGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNI 545
             LP     RI       WGALLGAC    GN E+AE  A+ L +L+P N+  +V+L NI
Sbjct: 471 KDLP----SRIGPGTAGSWGALLGACRL-HGNIELAEEVAEFLFKLEPGNSGRYVMLSNI 525

Query: 546 YAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
           YAA+G+  +  ++R  M  KG++K    SW+       +F++ D    +  EI
Sbjct: 526 YAAAGQWDDARRVRGLMKEKGLKKDQAYSWIEVRSLKHVFVADDMSHCEADEI 578



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 107/361 (29%), Positives = 170/361 (47%), Gaps = 28/361 (7%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQN-GRLSEARRLFEEMP--ERNVV 74
           +  YS+      A A F  +P +N  SYN +L+  L+      +A  LF+ MP   RN+V
Sbjct: 78  VALYSRLPSSAAAVAAFDDLPHKNAHSYNTLLAALLRRPDTFPDALHLFDTMPADARNLV 137

Query: 75  SWTAMICGLADAGRVCEARKLFEE------------MPERNVVSWNSMVVGLIRNGELNE 122
           S+  ++  L   GR  EA ++               M    VVS  +   G+     L E
Sbjct: 138 SYNTLMSSLVHHGRQAEALRVVARLARDRFLGPGLAMDRFTVVSVATACAGIRAARPLRE 197

Query: 123 ARK--VFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAG 180
                V + M +  VI  NAM+  Y +   + EA  LF+++  R+ VTWTSMISGYC+  
Sbjct: 198 MHGAVVVSGMEL-TVIMANAMVNAYSKAWRVEEARHLFDQISIRDNVTWTSMISGYCQVK 256

Query: 181 EVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNS 240
           +++E   +F  MP K+ V+WTA+I G   NG    +L LF  M      G +    +  S
Sbjct: 257 KLDEALQVFDMMPDKDRVAWTALISGHEQNGEEDTALELFERMLA---EGVSPTTFALVS 313

Query: 241 MINGYIRFGRLEEAQNLFDTVPVRDEIS-------WTSMIDGYLSVGQVSNAYYLFHNMP 293
           ++    + G +   + L  ++  R   S         +++D Y   G ++ A  +FH MP
Sbjct: 314 VLGACAKLGLVTRGKELHCSILRRSIGSDPFNIFIHNALVDMYSKCGDMTAAMAVFHRMP 373

Query: 294 DRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQ 353
           +RD ++W +M++G   N L  ++  +F EM   GV P + TF  +  A   +  +  GR 
Sbjct: 374 ERDFISWNSMVTGFSHNGLGKQSLAIFEEMLVAGVRPTHVTFLAVLTACSHSGLVSNGRL 433

Query: 354 I 354
           I
Sbjct: 434 I 434



 Score =  112 bits (281), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 108/466 (23%), Positives = 182/466 (39%), Gaps = 135/466 (28%)

Query: 29  EAKALFQLMPQ--RNVVSYNAMLSGFLQNGRLSEARRLFEEMP----------------- 69
           +A  LF  MP   RN+VSYN ++S  + +GR +EA R+   +                  
Sbjct: 121 DALHLFDTMPADARNLVSYNTLMSSLVHHGRQAEALRVVARLARDRFLGPGLAMDRFTVV 180

Query: 70  ---------------------------ERNVVSWTAMICGLADAGRVCEARKLFEEMPER 102
                                      E  V+   AM+   + A RV EAR LF+++  R
Sbjct: 181 SVATACAGIRAARPLREMHGAVVVSGMELTVIMANAMVNAYSKAWRVEEARHLFDQISIR 240

Query: 103 NVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEM- 161
           + V+W SM+ G  +  +L+EA +VF+ MP K+ ++W A+I+G+ +      A+ LFE M 
Sbjct: 241 DNVTWTSMISGYCQVKKLDEALQVFDMMPDKDRVAWTALISGHEQNGEEDTALELFERML 300

Query: 162 -----------------------------------------EERNVVTWTSMISGYCRAG 180
                                                    +  N+    +++  Y + G
Sbjct: 301 AEGVSPTTFALVSVLGACAKLGLVTRGKELHCSILRRSIGSDPFNIFIHNALVDMYSKCG 360

Query: 181 EVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNS 240
           ++     +F RMP ++ +SW +M+ GF+ NG  K+SL +F EM                 
Sbjct: 361 DMTAAMAVFHRMPERDFISWNSMVTGFSHNGLGKQSLAIFEEM----------------- 403

Query: 241 MINGYIRFGRLEEAQNLFDTVPVR-DEISWTSMIDGYLSVGQVSNAYYLFHNMPDRD--- 296
           ++ G                  VR   +++ +++      G VSN   +  +M D     
Sbjct: 404 LVAG------------------VRPTHVTFLAVLTACSHSGLVSNGRLILESMEDHGVEP 445

Query: 297 -AVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIH 355
            A  + A I  L +N    EA     ++ +   P    ++  L GA     NI+L  ++ 
Sbjct: 446 RAEHYAAFIDALGRNRQLEEAIEFIKDLPSRIGPGTAGSWGALLGACRLHGNIELAEEVA 505

Query: 356 CVLMKTE---SESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDL 398
             L K E   S   ++L N    +YA  G  D+A  +   M  + L
Sbjct: 506 EFLFKLEPGNSGRYVMLSN----IYAAAGQWDDARRVRGLMKEKGL 547



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 76/270 (28%), Positives = 133/270 (49%), Gaps = 20/270 (7%)

Query: 11  VVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPE 70
           V+   + +  YSK   ++EA+ LF  +  R+ V++ +M+SG+ Q  +L EA ++F+ MP+
Sbjct: 211 VIMANAMVNAYSKAWRVEEARHLFDQISIRDNVTWTSMISGYCQVKKLDEALQVFDMMPD 270

Query: 71  RNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVV---------GLIRNG-EL 120
           ++ V+WTA+I G    G    A +LFE M    V      +V         GL+  G EL
Sbjct: 271 KDRVAWTALISGHEQNGEEDTALELFERMLAEGVSPTTFALVSVLGACAKLGLVTRGKEL 330

Query: 121 NEA--RKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCR 178
           + +  R+   S P  N+   NA++  Y +C  M  A+ +F  M ER+ ++W SM++G+  
Sbjct: 331 HCSILRRSIGSDPF-NIFIHNALVDMYSKCGDMTAAMAVFHRMPERDFISWNSMVTGFSH 389

Query: 179 AGEVEEGYCLFRRM----PRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCN 234
            G  ++   +F  M     R   V++ A++   + +G      L+   M+   D+G    
Sbjct: 390 NGLGKQSLAIFEEMLVAGVRPTHVTFLAVLTACSHSGLVSNGRLILESME---DHGVEPR 446

Query: 235 VQSCNSMINGYIRFGRLEEAQNLFDTVPVR 264
            +   + I+   R  +LEEA      +P R
Sbjct: 447 AEHYAAFIDALGRNRQLEEAIEFIKDLPSR 476


>gi|15233234|ref|NP_188214.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546758|sp|Q9LSB8.2|PP235_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g15930
 gi|332642227|gb|AEE75748.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 687

 Score =  304 bits (779), Expect = 7e-80,   Method: Compositional matrix adjust.
 Identities = 183/562 (32%), Positives = 300/562 (53%), Gaps = 25/562 (4%)

Query: 56  GRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVV----SWNSMV 111
           G +S A +LF ++PE +VV W  MI G +      E  +L+  M +  V     ++  ++
Sbjct: 82  GHVSYAYKLFVKIPEPDVVVWNNMIKGWSKVDCDGEGVRLYLNMLKEGVTPDSHTFPFLL 141

Query: 112 VGLIRNGELNEARKVFNSMPIK-----NVISWNAMIAGYVECCMMGEAIVLFEEMEERNV 166
            GL R+G      K  +   +K     N+   NA++  Y  C +M  A  +F+   + +V
Sbjct: 142 NGLKRDGGALACGKKLHCHVVKFGLGSNLYVQNALVKMYSLCGLMDMARGVFDRRCKEDV 201

Query: 167 VTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGI 226
            +W  MISGY R  E EE   L   M R N+VS T++      +   K      ++ K +
Sbjct: 202 FSWNLMISGYNRMKEYEESIELLVEMER-NLVSPTSVTLLLVLSACSK------VKDKDL 254

Query: 227 C----DNGNNCNVQSC----NSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLS 278
           C    +  + C  +      N+++N Y   G ++ A  +F ++  RD ISWTS++ GY+ 
Sbjct: 255 CKRVHEYVSECKTEPSLRLENALVNAYAACGEMDIAVRIFRSMKARDVISWTSIVKGYVE 314

Query: 279 VGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVL 338
            G +  A   F  MP RD ++WT MI G ++   F E+  +F EM++ G+ P   T   +
Sbjct: 315 RGNLKLARTYFDQMPVRDRISWTIMIDGYLRAGCFNESLEIFREMQSAGMIPDEFTMVSV 374

Query: 339 FGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDL 398
             A     ++++G  I   + K + ++D+++ N LI MY KCG  + A  +F +M  RD 
Sbjct: 375 LTACAHLGSLEIGEWIKTYIDKNKIKNDVVVGNALIDMYFKCGCSEKAQKVFHDMDQRDK 434

Query: 399 VSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNA 458
            +W +MV+G +++G   E +KVF  M +    P+ +T+LG+LSAC+H+G+V +  + F  
Sbjct: 435 FTWTAMVVGLANNGQGQEAIKVFFQMQDMSIQPDDITYLGVLSACNHSGMVDQARKFFAK 494

Query: 459 MFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNA 518
           M   ++I+P   HY  M+++LGRAG +KEA E + ++P  P+  +WGALLGA      + 
Sbjct: 495 MRSDHRIEPSLVHYGCMVDMLGRAGLVKEAYEILRKMPMNPNSIVWGALLGASRL-HNDE 553

Query: 519 EIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMR 578
            +AE AAK++LEL+P N   + +LCNIYA   R  +  ++R  +    ++K PG S +  
Sbjct: 554 PMAELAAKKILELEPDNGAVYALLCNIYAGCKRWKDLREVRRKIVDVAIKKTPGFSLIEV 613

Query: 579 NGGIQMFLSGDKIPAQVAEILL 600
           NG    F++GDK   Q  EI +
Sbjct: 614 NGFAHEFVAGDKSHLQSEEIYM 635



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 104/371 (28%), Positives = 172/371 (46%), Gaps = 26/371 (7%)

Query: 41  NVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMP 100
           N+   NA++  +   G +  AR +F+   + +V SW  MI G        E+ +L  EM 
Sbjct: 169 NLYVQNALVKMYSLCGLMDMARGVFDRRCKEDVFSWNLMISGYNRMKEYEESIELLVEM- 227

Query: 101 ERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISW-------------NAMIAGYVE 147
           ERN+VS  S+ + L+    L+   KV +    K V  +             NA++  Y  
Sbjct: 228 ERNLVSPTSVTLLLV----LSACSKVKDKDLCKRVHEYVSECKTEPSLRLENALVNAYAA 283

Query: 148 CCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGF 207
           C  M  A+ +F  M+ R+V++WTS++ GY   G ++     F +MP ++ +SWT MI G+
Sbjct: 284 CGEMDIAVRIFRSMKARDVISWTSIVKGYVERGNLKLARTYFDQMPVRDRISWTIMIDGY 343

Query: 208 AWNGFHKESLLLFIEMKG---ICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVR 264
              G   ESL +F EM+    I D     +V +  + + G +  G  E  +   D   ++
Sbjct: 344 LRAGCFNESLEIFREMQSAGMIPDEFTMVSVLTACAHL-GSLEIG--EWIKTYIDKNKIK 400

Query: 265 -DEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEM 323
            D +   ++ID Y   G    A  +FH+M  RD   WTAM+ GL  N    EA  +F +M
Sbjct: 401 NDVVVGNALIDMYFKCGCSEKAQKVFHDMDQRDKFTWTAMVVGLANNGQGQEAIKVFFQM 460

Query: 324 RAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTES-ESDLILENCLISMYAKCGV 382
           +   + P + T+  +  A   +  +D  R+    +      E  L+   C++ M  + G+
Sbjct: 461 QDMSIQPDDITYLGVLSACNHSGMVDQARKFFAKMRSDHRIEPSLVHYGCMVDMLGRAGL 520

Query: 383 IDNAYNIFSNM 393
           +  AY I   M
Sbjct: 521 VKEAYEILRKM 531



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 70/273 (25%), Positives = 133/273 (48%), Gaps = 17/273 (6%)

Query: 46  NAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVV 105
           NA+++ +   G +  A R+F  M  R+V+SWT+++ G  + G +  AR  F++MP R+ +
Sbjct: 275 NALVNAYAACGEMDIAVRIFRSMKARDVISWTSIVKGYVERGNLKLARTYFDQMPVRDRI 334

Query: 106 SWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCM------MGEAIVLFE 159
           SW  M+ G +R G  NE+ ++F  M    +I     +   +  C       +GE I  + 
Sbjct: 335 SWTIMIDGYLRAGCFNESLEIFREMQSAGMIPDEFTMVSVLTACAHLGSLEIGEWIKTYI 394

Query: 160 EME--ERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESL 217
           +    + +VV   ++I  Y + G  E+   +F  M +++  +WTAM+ G A NG  +E++
Sbjct: 395 DKNKIKNDVVVGNALIDMYFKCGCSEKAQKVFHDMDQRDKFTWTAMVVGLANNGQGQEAI 454

Query: 218 LLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEIS-----WTSM 272
            +F +M+ +    ++       S  N     G +++A+  F  +     I      +  M
Sbjct: 455 KVFFQMQDMSIQPDDITYLGVLSACN---HSGMVDQARKFFAKMRSDHRIEPSLVHYGCM 511

Query: 273 IDGYLSVGQVSNAYYLFHNMP-DRDAVAWTAMI 304
           +D     G V  AY +   MP + +++ W A++
Sbjct: 512 VDMLGRAGLVKEAYEILRKMPMNPNSIVWGALL 544



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 68/269 (25%), Positives = 139/269 (51%), Gaps = 15/269 (5%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWT 77
           +  Y+  G +D A  +F+ M  R+V+S+ +++ G+++ G L  AR  F++MP R+ +SWT
Sbjct: 278 VNAYAACGEMDIAVRIFRSMKARDVISWTSIVKGYVERGNLKLARTYFDQMPVRDRISWT 337

Query: 78  AMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIR------NGELNEARKVF-NSM 130
            MI G   AG   E+ ++F EM    ++     +V ++       + E+ E  K + +  
Sbjct: 338 IMIDGYLRAGCFNESLEIFREMQSAGMIPDEFTMVSVLTACAHLGSLEIGEWIKTYIDKN 397

Query: 131 PIKN-VISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLF 189
            IKN V+  NA+I  Y +C    +A  +F +M++R+  TWT+M+ G    G+ +E   +F
Sbjct: 398 KIKNDVVVGNALIDMYFKCGCSEKAQKVFHDMDQRDKFTWTAMVVGLANNGQGQEAIKVF 457

Query: 190 RRMPRKNV----VSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGY 245
            +M   ++    +++  ++     +G   ++   F +M+   D+    ++     M++  
Sbjct: 458 FQMQDMSIQPDDITYLGVLSACNHSGMVDQARKFFAKMRS--DHRIEPSLVHYGCMVDML 515

Query: 246 IRFGRLEEAQNLFDTVPVR-DEISWTSMI 273
            R G ++EA  +   +P+  + I W +++
Sbjct: 516 GRAGLVKEAYEILRKMPMNPNSIVWGALL 544



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 66/245 (26%), Positives = 109/245 (44%), Gaps = 49/245 (20%)

Query: 11  VVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMP- 69
           V+  TS +  Y +RG +  A+  F  MP R+ +S+  M+ G+L+ G  +E+  +F EM  
Sbjct: 302 VISWTSIVKGYVERGNLKLARTYFDQMPVRDRISWTIMIDGYLRAGCFNESLEIFREMQS 361

Query: 70  --------------------------------------ERNVVSWTAMICGLADAGRVCE 91
                                                 + +VV   A+I      G   +
Sbjct: 362 AGMIPDEFTMVSVLTACAHLGSLEIGEWIKTYIDKNKIKNDVVVGNALIDMYFKCGCSEK 421

Query: 92  ARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECC-- 149
           A+K+F +M +R+  +W +MVVGL  NG+  EA KVF  M   ++   +    G +  C  
Sbjct: 422 AQKVFHDMDQRDKFTWTAMVVGLANNGQGQEAIKVFFQMQDMSIQPDDITYLGVLSACNH 481

Query: 150 --MMGEAIVLFEEME-----ERNVVTWTSMISGYCRAGEVEEGYCLFRRMP-RKNVVSWT 201
             M+ +A   F +M      E ++V +  M+    RAG V+E Y + R+MP   N + W 
Sbjct: 482 SGMVDQARKFFAKMRSDHRIEPSLVHYGCMVDMLGRAGLVKEAYEILRKMPMNPNSIVWG 541

Query: 202 AMIGG 206
           A++G 
Sbjct: 542 ALLGA 546



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 44/152 (28%), Positives = 80/152 (52%), Gaps = 10/152 (6%)

Query: 3   ERNHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEAR 62
           ++N  K+ VV   + I  Y K G  ++A+ +F  M QR+  ++ AM+ G   NG+  EA 
Sbjct: 395 DKNKIKNDVVVGNALIDMYFKCGCSEKAQKVFHDMDQRDKFTWTAMVVGLANNGQGQEAI 454

Query: 63  RLFEEMPERNV----VSWTAMICGLADAGRVCEARKLFEEMP-----ERNVVSWNSMVVG 113
           ++F +M + ++    +++  ++     +G V +ARK F +M      E ++V +  MV  
Sbjct: 455 KVFFQMQDMSIQPDDITYLGVLSACNHSGMVDQARKFFAKMRSDHRIEPSLVHYGCMVDM 514

Query: 114 LIRNGELNEARKVFNSMPIK-NVISWNAMIAG 144
           L R G + EA ++   MP+  N I W A++  
Sbjct: 515 LGRAGLVKEAYEILRKMPMNPNSIVWGALLGA 546


>gi|359475162|ref|XP_003631603.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g18840-like [Vitis vinifera]
          Length = 670

 Score =  304 bits (779), Expect = 7e-80,   Method: Compositional matrix adjust.
 Identities = 200/635 (31%), Positives = 327/635 (51%), Gaps = 54/635 (8%)

Query: 4   RNHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARR 63
           +N   S V      I  YSK GF+ EA  LF  MP+RNV ++NA++  +++   L +AR 
Sbjct: 16  KNGITSTVFTSNQLIHLYSKHGFLAEAHKLFDEMPERNVFTWNAIIWAYIKTQNLKQARE 75

Query: 64  LFEEMPERNVVSWTAMICGLADA-GRVCEARKLFEEM----PERNVVSWN-SMVVGLIRN 117
           LF+  P +++V++ +M+ G  +  G    A KLF EM     E  +  ++ + ++ L   
Sbjct: 76  LFDSAPSKDLVTYNSMLSGYINTDGYETNALKLFIEMQSLNDETRIDEFSLTRMLNLSAK 135

Query: 118 GELNEARKVFNSMPIKNV-----ISWNAMIAGYVECCMMGEAIVLFEEMEE-RNVVTWTS 171
             +    K  +S  +K        + +++I  Y +C    E   +F+      ++V+  +
Sbjct: 136 LSMESYGKQLHSYMVKTANNISGFAVSSLIDMYSKCGCFREVCQVFDGCAGVLDLVSKNA 195

Query: 172 MISGYCRAGEVEEGYCLF-RRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMK------ 224
           M++  CR GE+E G  LF R +   +VVSW  +I G+  NG  +++L LF+ M+      
Sbjct: 196 MVAACCREGELEMGVNLFWRDLELNDVVSWNTLISGYVQNGCEEDALKLFVHMEENEVRW 255

Query: 225 ---------GIC-------------------DNGNNCNVQSCNSMINGYIRFGRLEEAQN 256
                      C                   + G N  + S   +++ Y + G ++ A+ 
Sbjct: 256 NEHTIAGLLSACAGLRSLKLGKEVHGWVLKYELGFNPFISS--GLVDVYCKCGNMKYAEL 313

Query: 257 LFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEA 316
           ++ T+   +  S TSMI G+ S G +  A  LF ++ ++ ++ WTA+ +G V+++     
Sbjct: 314 VYATIGTGNAFSITSMIVGHSSQGNMGEARRLFDSLTEKSSIIWTALFTGYVKSQQCEAV 373

Query: 317 TYLFMEMRAHG--VPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLI 374
             L  E R     VP      SVL GA    A ++ G+QIH  +++   E D  L + ++
Sbjct: 374 FELLSEFRVKEAMVPDALILISVL-GACAIQAALNPGKQIHAYVLRIGIELDEKLVSAMV 432

Query: 375 SMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSV 434
            MY+K G I  A  IF  + +RD V +N M  G++HHG  N+ ++ FE MLE G  P++V
Sbjct: 433 DMYSKSGNIKYAEKIFQRVTNRDAVIYNIMTAGYAHHGHENQAIQQFEEMLERGVRPDAV 492

Query: 435 TFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLR 494
           TF+ +LSAC H GLV  G + F +M D Y I P  +HY  MI+L GRA ++++A  F+ R
Sbjct: 493 TFVALLSACRHCGLVELGEKYFASMTD-YNILPEIDHYACMIDLYGRANQLEKAVAFMKR 551

Query: 495 LPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVE 554
           +P EPD  I GA L AC     N ++A  A +++L ++  N   +V L N+YAA G+ VE
Sbjct: 552 IPIEPDAVILGAFLNACRI-NRNTKLAREAEEKILRIEGDNGARYVQLANVYAAEGKWVE 610

Query: 555 EHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGD 589
             ++R  M    ++K  GCSW+     + +F SGD
Sbjct: 611 MGRIRRKMRENEIKKFAGCSWVYVENRVHIFTSGD 645



 Score = 43.1 bits (100), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 24/95 (25%), Positives = 47/95 (49%), Gaps = 4/95 (4%)

Query: 347 NIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVM 406
           +I  G + H   +K    S +   N LI +Y+K G +  A+ +F  M  R++ +WN+++ 
Sbjct: 3   SIKDGFRFHAHAIKNGITSTVFTSNQLIHLYSKHGFLAEAHKLFDEMPERNVFTWNAIIW 62

Query: 407 GFSHHGLANETLKVFESMLESGTHPNSVTFLGILS 441
            +    +  + LK    + +S    + VT+  +LS
Sbjct: 63  AY----IKTQNLKQARELFDSAPSKDLVTYNSMLS 93


>gi|225444173|ref|XP_002268853.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21300-like [Vitis vinifera]
          Length = 853

 Score =  304 bits (779), Expect = 8e-80,   Method: Compositional matrix adjust.
 Identities = 206/646 (31%), Positives = 320/646 (49%), Gaps = 66/646 (10%)

Query: 10  LVVHLTSSITK-YSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEM 68
           L V + SS+ K YS+ G I +A+ LF  MP ++ V +N ML+G+++NG    A  +F EM
Sbjct: 180 LDVFVGSSLIKFYSENGCIHDARYLFDRMPSKDGVLWNVMLNGYVKNGDWDNATGVFMEM 239

Query: 69  --PERNVVSWTAMICGLADAGRVCEARKL--FEEMPERNVVS---------WNSMVVGLI 115
              E N  S T   C L+    VC +  +  F       VVS          N+++    
Sbjct: 240 RRTETNPNSVT-FACVLS----VCASEIMINFGSQLHGLVVSSGLEMDSPVANTLLAMYA 294

Query: 116 RNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEM----EERNVVTWTS 171
           + G L +AR++F+ MP  ++++WN MI+GYV+   M EA  LF EM     + + +T++S
Sbjct: 295 KCGHLFDARRLFDMMPKTDLVTWNGMISGYVQNGFMDEASCLFHEMISARMKPDSITFSS 354

Query: 172 -----------------------------------MISGYCRAGEVEEGYCLFRRMPRKN 196
                                              +I  Y +  +VE    +F +    +
Sbjct: 355 FLPLLSEGATLRQGKEIHCYIIRNGVSLDVFLKSALIDIYFKCRDVEMARKIFDQRTPVD 414

Query: 197 VVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQN 256
           +V  TAMI G+  NG +  +L +F   + +       N  +  S++        L   + 
Sbjct: 415 IVVCTAMISGYVLNGMNNNALEIF---RWLLQERMRANSVTLASVLPACAGLAALTLGKE 471

Query: 257 LFDTVPVRDE----ISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNEL 312
           L   +            ++++D Y   G++  A+  F  + D+DAV W +MI+   QN  
Sbjct: 472 LHGHILKNGHGGSCYVGSAIMDMYAKCGRLDLAHQTFIGISDKDAVCWNSMITSCSQNGK 531

Query: 313 FVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENC 372
             EA  LF +M   G      + S    A      +  G++IH  +M+    SDL  E+ 
Sbjct: 532 PEEAIDLFRQMGMAGTKYDCVSISAALSACANLPALHYGKEIHAFMMRGAFRSDLFAESA 591

Query: 373 LISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPN 432
           LI MY+KCG +D A  +F  M  ++ VSWNS++  + +HG   ++L +F  ML  G  P+
Sbjct: 592 LIDMYSKCGNLDLACRVFDTMEEKNEVSWNSIIAAYGNHGRLKDSLNLFHGMLGDGIQPD 651

Query: 433 SVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFV 492
            VTFL I+SAC HAG V  G   F  M +   I    EHY  M++L GRAG++ EA   +
Sbjct: 652 HVTFLAIISACGHAGQVDEGIHYFRCMTEELGIMARMEHYACMVDLFGRAGRLNEAFGMI 711

Query: 493 LRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRH 552
             +PF PD  +WG LLGAC    GN E+AE A++ L +LDP N+  +V+L N++A +G+ 
Sbjct: 712 NSMPFSPDAGVWGTLLGACRL-HGNVELAEVASRNLFDLDPQNSGYYVLLSNVHANAGQW 770

Query: 553 VEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
               K+R  M  +GV+KVPGCSW+  N    MF++ D+   Q ++I
Sbjct: 771 ESVLKIRSLMKERGVQKVPGCSWIDVNNTTHMFVAADRSHPQSSQI 816



 Score =  155 bits (391), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 123/477 (25%), Positives = 218/477 (45%), Gaps = 30/477 (6%)

Query: 53  LQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVV 112
           L  GR + A+ L   +    ++  T ++      G   +A+ +F ++       WN M+ 
Sbjct: 62  LSQGRQAHAQMLVNGIGYNGILG-TKLLGMYVLCGAFLDAKNIFYQLRLWCSEPWNWMIR 120

Query: 113 GLIRNGELNEARKVF------NSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEME---- 162
           G    G+ + A   +       ++P K    +     G +    +G   V+ ++++    
Sbjct: 121 GFTMMGQFDFALLFYFKMLGCGTLPDKYTFPYVIKACGGLNSVALGR--VVHDKIQFMGF 178

Query: 163 ERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIE 222
           E +V   +S+I  Y   G + +   LF RMP K+ V W  M+ G+  NG    +  +F+E
Sbjct: 179 ELDVFVGSSLIKFYSENGCIHDARYLFDRMPSKDGVLWNVMLNGYVKNGDWDNATGVFME 238

Query: 223 MKGICDNGNN----CNVQSCNS--MINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGY 276
           M+    N N+    C +  C S  MIN   +   L  +  L    PV +     +++  Y
Sbjct: 239 MRRTETNPNSVTFACVLSVCASEIMINFGSQLHGLVVSSGLEMDSPVAN-----TLLAMY 293

Query: 277 LSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFS 336
              G + +A  LF  MP  D V W  MISG VQN    EA+ LF EM +  + P + TFS
Sbjct: 294 AKCGHLFDARRLFDMMPKTDLVTWNGMISGYVQNGFMDEASCLFHEMISARMKPDSITFS 353

Query: 337 VLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSR 396
                    A +  G++IHC +++     D+ L++ LI +Y KC  ++ A  IF      
Sbjct: 354 SFLPLLSEGATLRQGKEIHCYIIRNGVSLDVFLKSALIDIYFKCRDVEMARKIFDQRTPV 413

Query: 397 DLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELF 456
           D+V   +M+ G+  +G+ N  L++F  +L+     NSVT   +L AC+    ++ G EL 
Sbjct: 414 DIVVCTAMISGYVLNGMNNNALEIFRWLLQERMRANSVTLASVLPACAGLAALTLGKELH 473

Query: 457 NAMFDVYKIQPGPEHYV--SMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGAC 511
                + K   G   YV  +++++  + G++  A +  + +  + D   W +++ +C
Sbjct: 474 G---HILKNGHGGSCYVGSAIMDMYAKCGRLDLAHQTFIGIS-DKDAVCWNSMITSC 526



 Score =  145 bits (365), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 121/487 (24%), Positives = 216/487 (44%), Gaps = 46/487 (9%)

Query: 70  ERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNS 129
           E +V   +++I   ++ G + +AR LF+ MP ++ V WN M+ G ++NG+ + A  VF  
Sbjct: 179 ELDVFVGSSLIKFYSENGCIHDARYLFDRMPSKDGVLWNVMLNGYVKNGDWDNATGVFME 238

Query: 130 MPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVT---------WTSMISGYCRAG 180
           M        +   A  +  C   E ++ F       VV+           ++++ Y + G
Sbjct: 239 MRRTETNPNSVTFACVLSVCA-SEIMINFGSQLHGLVVSSGLEMDSPVANTLLAMYAKCG 297

Query: 181 EVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNS 240
            + +   LF  MP+ ++V+W  MI G+  NGF  E+  LF EM       ++    S   
Sbjct: 298 HLFDARRLFDMMPKTDLVTWNGMISGYVQNGFMDEASCLFHEMISARMKPDSITFSSFLP 357

Query: 241 MIN--GYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAV 298
           +++    +R G+      + + V + D    +++ID Y     V  A  +F      D V
Sbjct: 358 LLSEGATLRQGKEIHCYIIRNGVSL-DVFLKSALIDIYFKCRDVEMARKIFDQRTPVDIV 416

Query: 299 AWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVL 358
             TAMISG V N +   A  +F  +    +   + T + +  A    A + LG+++H  +
Sbjct: 417 VCTAMISGYVLNGMNNNALEIFRWLLQERMRANSVTLASVLPACAGLAALTLGKELHGHI 476

Query: 359 MKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETL 418
           +K        + + ++ MYAKCG +D A+  F  +  +D V WNSM+   S +G   E +
Sbjct: 477 LKNGHGGSCYVGSAIMDMYAKCGRLDLAHQTFIGISDKDAVCWNSMITSCSQNGKPEEAI 536

Query: 419 KVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELF---------------NAMFDVY 463
            +F  M  +GT  + V+    LSAC++   +  G E+                +A+ D+Y
Sbjct: 537 DLFRQMGMAGTKYDCVSISAALSACANLPALHYGKEIHAFMMRGAFRSDLFAESALIDMY 596

Query: 464 KI---------------QPGPEHYVSMINLLGRAGKIKEAEEF---VLRLPFEPDHRIWG 505
                            +     + S+I   G  G++K++      +L    +PDH  + 
Sbjct: 597 SKCGNLDLACRVFDTMEEKNEVSWNSIIAAYGNHGRLKDSLNLFHGMLGDGIQPDHVTFL 656

Query: 506 ALLGACG 512
           A++ ACG
Sbjct: 657 AIISACG 663



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 91/431 (21%), Positives = 193/431 (44%), Gaps = 31/431 (7%)

Query: 7   PKSLVVHLTSSITKYSKRGFIDEAKALFQLMP----QRNVVSYNAMLSGFLQNGRLSEAR 62
           PK+ +V     I+ Y + GF+DEA  LF  M     + + +++++ L    +   L + +
Sbjct: 310 PKTDLVTWNGMISGYVQNGFMDEASCLFHEMISARMKPDSITFSSFLPLLSEGATLRQGK 369

Query: 63  RLFEEMPERNVVSWTAMICGLADAGRVCE----ARKLFEEMPERNVVSWNSMVVGLIRNG 118
            +   +    V     +   L D    C     ARK+F++    ++V   +M+ G + NG
Sbjct: 370 EIHCYIIRNGVSLDVFLKSALIDIYFKCRDVEMARKIFDQRTPVDIVVCTAMISGYVLNG 429

Query: 119 ELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEER--------NVVTWT 170
             N A ++F  +  + + + +  +A  +  C    A+ L +E+           +    +
Sbjct: 430 MNNNALEIFRWLLQERMRANSVTLASVLPACAGLAALTLGKELHGHILKNGHGGSCYVGS 489

Query: 171 SMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNG 230
           +++  Y + G ++  +  F  +  K+ V W +MI   + NG  +E++ LF +M G+    
Sbjct: 490 AIMDMYAKCGRLDLAHQTFIGISDKDAVCWNSMITSCSQNGKPEEAIDLFRQM-GMAGTK 548

Query: 231 NNC-----NVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNA 285
            +C      + +C ++    + +G+ E    +       D  + +++ID Y   G +  A
Sbjct: 549 YDCVSISAALSACANL--PALHYGK-EIHAFMMRGAFRSDLFAESALIDMYSKCGNLDLA 605

Query: 286 YYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGAT 345
             +F  M +++ V+W ++I+    +    ++  LF  M   G+ P + TF  +  A G  
Sbjct: 606 CRVFDTMEEKNEVSWNSIIAAYGNHGRLKDSLNLFHGMLGDGIQPDHVTFLAIISACGHA 665

Query: 346 ANIDLGRQIHCVLMKTESESDLI-LEN--CLISMYAKCGVIDNAYNIFSNM-VSRDLVSW 401
             +D G  IH     TE    +  +E+  C++ ++ + G ++ A+ + ++M  S D   W
Sbjct: 666 GQVDEG--IHYFRCMTEELGIMARMEHYACMVDLFGRAGRLNEAFGMINSMPFSPDAGVW 723

Query: 402 NSMVMGFSHHG 412
            +++     HG
Sbjct: 724 GTLLGACRLHG 734


>gi|357154895|ref|XP_003576937.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Brachypodium distachyon]
          Length = 661

 Score =  304 bits (778), Expect = 9e-80,   Method: Compositional matrix adjust.
 Identities = 174/465 (37%), Positives = 266/465 (57%), Gaps = 14/465 (3%)

Query: 133 KNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRM 192
           ++V+  NA++  Y     +  A  LF+EM +R+VV+WT+++ GY R G  +E + +F RM
Sbjct: 174 QSVLVGNALVHFYANHRSLAHARNLFDEMPDRDVVSWTTLVDGYARRGLADEAWRVFCRM 233

Query: 193 P-----RKNVVSWTAMIGGFAWNGFHKESLLLFIEM--KGICDNGNNCNVQSCNSMINGY 245
                 + N V+  A++      G     LL F  M  + + D G   +V   N++I+ +
Sbjct: 234 VVAGGLQPNEVTLVAVVSAMGQMG-----LLAFGRMVYRYVADGGVGRSVNLENALIDMF 288

Query: 246 IRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMIS 305
            +FG    A+ +FD++ V+D  SWT+M++ Y   G + +A  LF +MP R+AV+W+ MI+
Sbjct: 289 GKFGCAASAREVFDSMAVKDVYSWTTMVNAYAKCGDLESAARLFDDMPRRNAVSWSCMIA 348

Query: 306 GLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIH-CVLMKTESE 364
              Q     EA  LF  M   GV P+NA    +  A      +DLGR I+   ++  ++ 
Sbjct: 349 AYSQANQPEEAVRLFKAMIEEGVEPINAGLVSVLSACAQLGCLDLGRWIYDNYVISGKAV 408

Query: 365 SDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESM 424
             + L N  I +YAKCG  D A  +F+ M  R++VSWNSM+M  + HG + E L++FE +
Sbjct: 409 LTVNLGNAFIDVYAKCGDFDAASKLFAEMAERNVVSWNSMIMAHAVHGQSEEVLRLFEQL 468

Query: 425 LESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGK 484
             +   P+ +TFLG+LSACSH+GLVS G   F  M  +Y I+P  EHY  MI+LLG+ G 
Sbjct: 469 KGTCIVPDEITFLGLLSACSHSGLVSEGRRYFKEMKLIYGIEPKSEHYACMIDLLGKIGL 528

Query: 485 IKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCN 544
           ++EA E    +P E D   WGALL AC    GN EI E AA +L++L+PL++  +V++  
Sbjct: 529 LEEAFEVAKGMPMETDEAGWGALLNACRM-YGNVEIGEFAADKLVQLNPLDSGIYVLMSQ 587

Query: 545 IYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGD 589
           IYA+  +  +   LR+ M  +GV+K PGCS +  +G    FL  D
Sbjct: 588 IYASKNKWDQVKILRVLMRERGVKKNPGCSSIEVDGKFHEFLVAD 632



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 90/347 (25%), Positives = 157/347 (45%), Gaps = 32/347 (9%)

Query: 21  YSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMP-----ERNVVS 75
           Y+    +  A+ LF  MP R+VVS+  ++ G+ + G   EA R+F  M      + N V+
Sbjct: 186 YANHRSLAHARNLFDEMPDRDVVSWTTLVDGYARRGLADEAWRVFCRMVVAGGLQPNEVT 245

Query: 76  WTAMICGLADAGRVCEARKLFEEMPE----RNVVSWNSMVVGLIRNGELNEARKVFNSMP 131
             A++  +   G +   R ++  + +    R+V   N+++    + G    AR+VF+SM 
Sbjct: 246 LVAVVSAMGQMGLLAFGRMVYRYVADGGVGRSVNLENALIDMFGKFGCAASAREVFDSMA 305

Query: 132 IKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRR 191
           +K+V SW  M+  Y +C  +  A  LF++M  RN V+W+ MI+ Y +A + EE   LF+ 
Sbjct: 306 VKDVYSWTTMVNAYAKCGDLESAARLFDDMPRRNAVSWSCMIAAYSQANQPEEAVRLFKA 365

Query: 192 MPRK----------NVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSM 241
           M  +          +V+S  A +G           L  +I    +        V   N+ 
Sbjct: 366 MIEEGVEPINAGLVSVLSACAQLGCL--------DLGRWIYDNYVISGKAVLTVNLGNAF 417

Query: 242 INGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDR----DA 297
           I+ Y + G  + A  LF  +  R+ +SW SMI  +   GQ      LF  +       D 
Sbjct: 418 IDVYAKCGDFDAASKLFAEMAERNVVSWNSMIMAHAVHGQSEEVLRLFEQLKGTCIVPDE 477

Query: 298 VAWTAMISGLVQNELFVEATYLFMEMR-AHGVPPLNATFSVLFGAAG 343
           + +  ++S    + L  E    F EM+  +G+ P +  ++ +    G
Sbjct: 478 ITFLGLLSACSHSGLVSEGRRYFKEMKLIYGIEPKSEHYACMIDLLG 524



 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 93/388 (23%), Positives = 173/388 (44%), Gaps = 62/388 (15%)

Query: 71  RNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSM 130
           ++V+   A++   A+   +  AR LF+EMP+R+VVSW ++V G  R G  +EA +VF  M
Sbjct: 174 QSVLVGNALVHFYANHRSLAHARNLFDEMPDRDVVSWTTLVDGYARRGLADEAWRVFCRM 233

Query: 131 PIK--------------------NVISWNAMIAGYVECCMMGEAIVL------------- 157
            +                      ++++  M+  YV    +G ++ L             
Sbjct: 234 VVAGGLQPNEVTLVAVVSAMGQMGLLAFGRMVYRYVADGGVGRSVNLENALIDMFGKFGC 293

Query: 158 -------FEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWN 210
                  F+ M  ++V +WT+M++ Y + G++E    LF  MPR+N VSW+ MI  ++  
Sbjct: 294 AASAREVFDSMAVKDVYSWTTMVNAYAKCGDLESAARLFDDMPRRNAVSWSCMIAAYSQA 353

Query: 211 GFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWT 270
              +E++ LF   K + + G         S+++   + G L+  + ++D   +  +   T
Sbjct: 354 NQPEEAVRLF---KAMIEEGVEPINAGLVSVLSACAQLGCLDLGRWIYDNYVISGKAVLT 410

Query: 271 -----SMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRA 325
                + ID Y   G    A  LF  M +R+ V+W +MI     +    E   LF +++ 
Sbjct: 411 VNLGNAFIDVYAKCGDFDAASKLFAEMAERNVVSWNSMIMAHAVHGQSEEVLRLFEQLKG 470

Query: 326 HGVPPLNATFSVLFGAAGATANIDLGRQ-------IHCVLMKTESESDLILENCLISMYA 378
             + P   TF  L  A   +  +  GR+       I+ +  K+E  +      C+I +  
Sbjct: 471 TCIVPDEITFLGLLSACSHSGLVSEGRRYFKEMKLIYGIEPKSEHYA------CMIDLLG 524

Query: 379 KCGVIDNAYNIFSNM-VSRDLVSWNSMV 405
           K G+++ A+ +   M +  D   W +++
Sbjct: 525 KIGLLEEAFEVAKGMPMETDEAGWGALL 552



 Score =  112 bits (279), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 86/279 (30%), Positives = 138/279 (49%), Gaps = 16/279 (5%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWT 77
           I  + K G    A+ +F  M  ++V S+  M++ + + G L  A RLF++MP RN VSW+
Sbjct: 285 IDMFGKFGCAASAREVFDSMAVKDVYSWTTMVNAYAKCGDLESAARLFDDMPRRNAVSWS 344

Query: 78  AMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLI----RNGELNEARKVFNSMPI- 132
            MI   + A +  EA +LF+ M E  V   N+ +V ++    + G L+  R ++++  I 
Sbjct: 345 CMIAAYSQANQPEEAVRLFKAMIEEGVEPINAGLVSVLSACAQLGCLDLGRWIYDNYVIS 404

Query: 133 -KNVIS---WNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCL 188
            K V++    NA I  Y +C     A  LF EM ERNVV+W SMI  +   G+ EE   L
Sbjct: 405 GKAVLTVNLGNAFIDVYAKCGDFDAASKLFAEMAERNVVSWNSMIMAHAVHGQSEEVLRL 464

Query: 189 FRRMPRKNVV----SWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMING 244
           F ++    +V    ++  ++   + +G   E    F EMK I          +C  MI+ 
Sbjct: 465 FEQLKGTCIVPDEITFLGLLSACSHSGLVSEGRRYFKEMKLIYGIEPKSEHYAC--MIDL 522

Query: 245 YIRFGRLEEAQNLFDTVPVR-DEISWTSMIDGYLSVGQV 282
             + G LEEA  +   +P+  DE  W ++++     G V
Sbjct: 523 LGKIGLLEEAFEVAKGMPMETDEAGWGALLNACRMYGNV 561



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 91/356 (25%), Positives = 156/356 (43%), Gaps = 60/356 (16%)

Query: 7   PKSLVVHLTSSITKYSKRGFIDEAKALFQLMP-----QRNVVSYNAMLS-----GFLQNG 56
           P   VV  T+ +  Y++RG  DEA  +F  M      Q N V+  A++S     G L  G
Sbjct: 203 PDRDVVSWTTLVDGYARRGLADEAWRVFCRMVVAGGLQPNEVTLVAVVSAMGQMGLLAFG 262

Query: 57  RL------------------------------SEARRLFEEMPERNVVSWTAMICGLADA 86
           R+                              + AR +F+ M  ++V SWT M+   A  
Sbjct: 263 RMVYRYVADGGVGRSVNLENALIDMFGKFGCAASAREVFDSMAVKDVYSWTTMVNAYAKC 322

Query: 87  GRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYV 146
           G +  A +LF++MP RN VSW+ M+    +  +  EA ++F +M  + V   NA +   +
Sbjct: 323 GDLESAARLFDDMPRRNAVSWSCMIAAYSQANQPEEAVRLFKAMIEEGVEPINAGLVSVL 382

Query: 147 ECCMMGEAIVLFEEMEERNVVTWTSM---------ISGYCRAGEVEEGYCLFRRMPRKNV 197
             C     + L   + +  V++  ++         I  Y + G+ +    LF  M  +NV
Sbjct: 383 SACAQLGCLDLGRWIYDNYVISGKAVLTVNLGNAFIDVYAKCGDFDAASKLFAEMAERNV 442

Query: 198 VSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCN----VQSCNSMINGYIRFGR--L 251
           VSW +MI   A +G  +E L LF ++KG C   +       + +C+   +G +  GR   
Sbjct: 443 VSWNSMIMAHAVHGQSEEVLRLFEQLKGTCIVPDEITFLGLLSACSH--SGLVSEGRRYF 500

Query: 252 EEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMP-DRDAVAWTAMISG 306
           +E + ++   P  +   +  MID    +G +  A+ +   MP + D   W A+++ 
Sbjct: 501 KEMKLIYGIEPKSEH--YACMIDLLGKIGLLEEAFEVAKGMPMETDEAGWGALLNA 554


>gi|4455294|emb|CAB36829.1| putative protein [Arabidopsis thaliana]
 gi|7268069|emb|CAB78407.1| putative protein [Arabidopsis thaliana]
          Length = 1024

 Score =  304 bits (778), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 191/624 (30%), Positives = 300/624 (48%), Gaps = 55/624 (8%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEM------PER 71
           ++ Y   G +  A+ +F  M QR+ V+YN +++G  Q G   +A  LF+ M      P+ 
Sbjct: 290 VSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMHLDGLEPDS 349

Query: 72  NVVSWTAMIC-------------------GLADAGRV----------C----EARKLFEE 98
           N ++   + C                   G A   ++          C     A   F E
Sbjct: 350 NTLASLVVACSADGTLFRGQQLHAYTTKLGFASNNKIEGALLNLYAKCADIETALDYFLE 409

Query: 99  MPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLF 158
               NVV WN M+V      +L  + ++F  M I+ ++         ++ C+    + L 
Sbjct: 410 TEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELG 469

Query: 159 EEMEER--------NVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWN 210
           E++  +        N    + +I  Y + G+++  + +  R   K+VVSWT MI G+   
Sbjct: 470 EQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQY 529

Query: 211 GFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVR----DE 266
            F  ++L  F +M    D G   +     + ++       L+E Q +     V     D 
Sbjct: 530 NFDDKALTTFRQM---LDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDL 586

Query: 267 ISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAH 326
               +++  Y   G++  +Y  F      D +AW A++SG  Q+    EA  +F+ M   
Sbjct: 587 PFQNALVTLYSRCGKIEESYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFVRMNRE 646

Query: 327 GVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNA 386
           G+   N TF     AA  TAN+  G+Q+H V+ KT  +S+  + N LISMYAKCG I +A
Sbjct: 647 GIDNNNFTFGSAVKAASETANMKQGKQVHAVITKTGYDSETEVCNALISMYAKCGSISDA 706

Query: 387 YNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHA 446
              F  + +++ VSWN+++  +S HG  +E L  F+ M+ S   PN VT +G+LSACSH 
Sbjct: 707 EKQFLEVSTKNEVSWNAIINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSACSHI 766

Query: 447 GLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGA 506
           GLV +G   F +M   Y + P PEHYV ++++L RAG +  A+EF+  +P +PD  +W  
Sbjct: 767 GLVDKGIAYFESMNSEYGLSPKPEHYVCVVDMLTRAGLLSRAKEFIQEMPIKPDALVWRT 826

Query: 507 LLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKG 566
           LL AC     N EI E AA  LLEL+P ++  +V+L N+YA S +       R  M  KG
Sbjct: 827 LLSAC-VVHKNMEIGEFAAHHLLELEPEDSATYVLLSNLYAVSKKWDARDLTRQKMKEKG 885

Query: 567 VRKVPGCSWLMRNGGIQMFLSGDK 590
           V+K PG SW+     I  F  GD+
Sbjct: 886 VKKEPGQSWIEVKNSIHSFYVGDQ 909



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 123/469 (26%), Positives = 211/469 (44%), Gaps = 28/469 (5%)

Query: 48  MLSGFLQ-NGRLSEARRLFEEMPERNVVSWTAMICGLAD----AGRVCEARKLFEEMPER 102
           +L G L+ NG L E R+L  ++ +  + S   +   L D     G +  A K+F+EMPER
Sbjct: 50  LLEGCLKTNGSLDEGRKLHSQILKLGLDSNGCLSEKLFDFYLFKGDLYGAFKVFDEMPER 109

Query: 103 NVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMG---------- 152
            + +WN M+  L     + E   +F  M  +NV       +G +E C  G          
Sbjct: 110 TIFTWNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEACRGGSVAFDVVEQI 169

Query: 153 EAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGF 212
            A +L++ + +  VV    +I  Y R G V+    +F  +  K+  SW AMI G + N  
Sbjct: 170 HARILYQGLRDSTVVC-NPLIDLYSRNGFVDLARRVFDGLRLKDHSSWVAMISGLSKNEC 228

Query: 213 HKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVP----VRDEIS 268
             E++ LF +M  +   G      + +S+++   +   LE  + L   V       D   
Sbjct: 229 EAEAIRLFCDMYVL---GIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYV 285

Query: 269 WTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGV 328
             +++  Y  +G + +A ++F NM  RDAV +  +I+GL Q     +A  LF  M   G+
Sbjct: 286 CNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMHLDGL 345

Query: 329 PPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYN 388
            P + T + L  A  A   +  G+Q+H    K    S+  +E  L+++YAKC  I+ A +
Sbjct: 346 EPDSNTLASLVVACSADGTLFRGQQLHAYTTKLGFASNNKIEGALLNLYAKCADIETALD 405

Query: 389 IFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGL 448
            F      ++V WN M++ +        + ++F  M      PN  T+  IL  C   G 
Sbjct: 406 YFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGD 465

Query: 449 VSRGWELFNAMFDVYKIQPGPEHYVS--MINLLGRAGKIKEAEEFVLRL 495
           +  G ++ +    + K       YV   +I++  + GK+  A + ++R 
Sbjct: 466 LELGEQIHS---QIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRF 511



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 112/423 (26%), Positives = 191/423 (45%), Gaps = 42/423 (9%)

Query: 100 PERNVVSWNSMVVGLIR-NGELNEARKVFNSMPIKNVISWNAMIAG-----YVECCMMGE 153
           P    + W  ++ G ++ NG L+E RK+ +S  +K  +  N  ++      Y+    +  
Sbjct: 42  PNHQTLKW--LLEGCLKTNGSLDEGRKL-HSQILKLGLDSNGCLSEKLFDFYLFKGDLYG 98

Query: 154 AIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFH 213
           A  +F+EM ER + TW  MI        + E + LF RM  +NV        G       
Sbjct: 99  AFKVFDEMPERTIFTWNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGV------ 152

Query: 214 KESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDE-ISWTSM 272
                                +++C     G + F  +E+         +RD  +    +
Sbjct: 153 ---------------------LEACRG---GSVAFDVVEQIHARILYQGLRDSTVVCNPL 188

Query: 273 IDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLN 332
           ID Y   G V  A  +F  +  +D  +W AMISGL +NE   EA  LF +M   G+ P  
Sbjct: 189 IDLYSRNGFVDLARRVFDGLRLKDHSSWVAMISGLSKNECEAEAIRLFCDMYVLGIMPTP 248

Query: 333 ATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSN 392
             FS +  A     ++++G Q+H +++K    SD  + N L+S+Y   G + +A +IFSN
Sbjct: 249 YAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGNLISAEHIFSN 308

Query: 393 MVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRG 452
           M  RD V++N+++ G S  G   + +++F+ M   G  P+S T   ++ ACS  G + RG
Sbjct: 309 MSQRDAVTYNTLINGLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSADGTLFRG 368

Query: 453 WELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACG 512
            +L +A           +   +++NL  +   I+ A ++ L    E +  +W  +L A G
Sbjct: 369 QQL-HAYTTKLGFASNNKIEGALLNLYAKCADIETALDYFLETEVE-NVVLWNVMLVAYG 426

Query: 513 FCE 515
             +
Sbjct: 427 LLD 429



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 120/511 (23%), Positives = 221/511 (43%), Gaps = 64/511 (12%)

Query: 30  AKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRV 89
           A+ L+Q +    VV  N ++  + +NG +  ARR+F+ +  ++  SW AMI GL+     
Sbjct: 171 ARILYQGLRDSTVVC-NPLIDLYSRNGFVDLARRVFDGLRLKDHSSWVAMISGLSKNECE 229

Query: 90  CEARKLFEEMPERNVVSWN---SMVVGLIRNGELNEARKVFNSMPIK-----NVISWNAM 141
            EA +LF +M    ++      S V+   +  E  E  +  + + +K     +    NA+
Sbjct: 230 AEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNAL 289

Query: 142 IAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRM------PRK 195
           ++ Y     +  A  +F  M +R+ VT+ ++I+G  + G  E+   LF+RM      P  
Sbjct: 290 VSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMHLDGLEPDS 349

Query: 196 NVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQ 255
           N ++   +        F  + L  +    G   N      +   +++N Y +   +E A 
Sbjct: 350 NTLASLVVACSADGTLFRGQQLHAYTTKLGFASNN-----KIEGALLNLYAKCADIETAL 404

Query: 256 NLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVE 315
           + F    V + + W  M+  Y  +  + N++ +F                          
Sbjct: 405 DYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFR------------------------- 439

Query: 316 ATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLIS 375
                 +M+   + P   T+  +        +++LG QIH  ++KT  + +  + + LI 
Sbjct: 440 ------QMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCSVLID 493

Query: 376 MYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVT 435
           MYAK G +D A++I      +D+VSW +M+ G++ +   ++ L  F  ML+ G   + V 
Sbjct: 494 MYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVG 553

Query: 436 FLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRL 495
               +SAC+    +  G ++ +A   V           +++ L  R GKI+E+      L
Sbjct: 554 LTNAVSACAGLQALKEGQQI-HAQACVSGFSSDLPFQNALVTLYSRCGKIEES-----YL 607

Query: 496 PFEP----DHRIWGALLGACGFCE-GNAEIA 521
            FE     D+  W AL+   GF + GN E A
Sbjct: 608 AFEQTEAGDNIAWNALVS--GFQQSGNNEEA 636



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 82/307 (26%), Positives = 129/307 (42%), Gaps = 10/307 (3%)

Query: 272 MIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPL 331
           + D YL  G +  A+ +F  MP+R    W  MI  L    L  E   LF+ M +  V P 
Sbjct: 86  LFDFYLFKGDLYGAFKVFDEMPERTIFTWNKMIKELASRNLIGEVFGLFVRMVSENVTPN 145

Query: 332 NATFS-VLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIF 390
             TFS VL    G +   D+  QIH  ++        ++ N LI +Y++ G +D A  +F
Sbjct: 146 EGTFSGVLEACRGGSVAFDVVEQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVF 205

Query: 391 SNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVS 450
             +  +D  SW +M+ G S +    E +++F  M   G  P    F  +LSAC     + 
Sbjct: 206 DGLRLKDHSSWVAMISGLSKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLE 265

Query: 451 RGWELFNAMFDVYKIQPGPEHYV--SMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGAL- 507
            G +L      V K+    + YV  ++++L    G +  AE     +  + D   +  L 
Sbjct: 266 IGEQLHGL---VLKLGFSSDTYVCNALVSLYFHLGNLISAEHIFSNMS-QRDAVTYNTLI 321

Query: 508 --LGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLK 565
             L  CG+ E   E+ +      LE D     + VV C+      R  + H     +G  
Sbjct: 322 NGLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSADGTLFRGQQLHAYTTKLGFA 381

Query: 566 GVRKVPG 572
              K+ G
Sbjct: 382 SNNKIEG 388


>gi|297844988|ref|XP_002890375.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297336217|gb|EFH66634.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 760

 Score =  304 bits (778), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 184/589 (31%), Positives = 309/589 (52%), Gaps = 49/589 (8%)

Query: 58  LSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIR- 116
            ++A  + + +P+  V S++++I  L  A    ++  +F  M    ++    ++  L + 
Sbjct: 66  FNDADLILQSIPDPTVYSFSSLIYALTKAKLFSQSIGVFSRMFSHGLIPDTHVLPNLFKV 125

Query: 117 NGELN--EARKVFNSMPIKNVISWNAMIAG-----YVECCMMGEAIVLFEEMEERNVVTW 169
             EL+  +A K  + +   + +  +A + G     Y+ C  MG+A  +F+ M E++VVT 
Sbjct: 126 CAELSAFKAGKQIHCVACVSGLDMDAFVQGSLFHMYMRCGRMGDARKVFDRMSEKDVVTC 185

Query: 170 TSMISGYCRAGEVEEGYCLFRRMPRK----NVVSWTAMIGGFAWNGFHKESLLLFIEMK- 224
           ++++ GY R G +EE   +   M +     N+VSW  ++ GF  +G+HKE++++F +M  
Sbjct: 186 SALLCGYARKGCLEEVVRILSEMEKSGIEPNIVSWNGILSGFNRSGYHKEAVIMFQKMHH 245

Query: 225 -GICDN-----------GNNCNV-----------------QSC--NSMINGYIRFGRLEE 253
            G C +           G++ N+                   C  ++M++ Y + G +  
Sbjct: 246 LGFCPDQVTVSSVLPSVGDSENLNMGRQIHGYVIKQGLLKDKCVISAMLDMYGKSGHVYG 305

Query: 254 AQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDR----DAVAWTAMISGLVQ 309
              LFD   + +     + I G    G V  A  +F    ++    + V+WT++I+G  Q
Sbjct: 306 IIKLFDEFEMMETGVCNAYITGLSRNGLVDKALEMFGLFKEQKMELNVVSWTSIIAGCAQ 365

Query: 310 NELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLIL 369
           N   +EA  LF EM+  GV P   T   +  A G  A +  GR  H   ++     D+ +
Sbjct: 366 NGKDIEALELFREMQVAGVKPNRVTIPSMLPACGNIAALGHGRSTHGFAVRVHLLDDVHV 425

Query: 370 ENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGT 429
            + LI MYAKCG I  +  +F+ M +++LV WNS++ G+S HG A E + +FES++ +  
Sbjct: 426 GSALIDMYAKCGRIKMSQIVFNMMPTKNLVCWNSLMNGYSMHGKAKEVMSIFESLMRTRL 485

Query: 430 HPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAE 489
            P+ ++F  +LSAC   GL   GW+ FN M + Y I+P  EHY  M+NLLGRAGK++EA 
Sbjct: 486 KPDFISFTSLLSACGQVGLTDEGWKYFNMMSEEYGIKPRLEHYSCMVNLLGRAGKLQEAY 545

Query: 490 EFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAAS 549
           + +  +PFEPD  +WGALL +C   + N ++AE AA++L  L+P N   +V++ NIYAA 
Sbjct: 546 DLIKEIPFEPDSCVWGALLNSCRL-QNNVDLAEIAAQKLFHLEPENPGTYVLMSNIYAAK 604

Query: 550 GRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
           G   E   +R  M   G++K PGCSW+     +   L+ DK   Q+ +I
Sbjct: 605 GMWTEVDSIRNKMESLGLKKNPGCSWIQVKNKVYTLLACDKSHPQIDQI 653



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 51/195 (26%), Positives = 98/195 (50%), Gaps = 9/195 (4%)

Query: 274 DGYLSVGQVS---------NAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMR 324
           DGY+S   ++         +A  +  ++PD    +++++I  L + +LF ++  +F  M 
Sbjct: 49  DGYISAKLIASYSNYNCFNDADLILQSIPDPTVYSFSSLIYALTKAKLFSQSIGVFSRMF 108

Query: 325 AHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVID 384
           +HG+ P       LF      +    G+QIHCV   +  + D  ++  L  MY +CG + 
Sbjct: 109 SHGLIPDTHVLPNLFKVCAELSAFKAGKQIHCVACVSGLDMDAFVQGSLFHMYMRCGRMG 168

Query: 385 NAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACS 444
           +A  +F  M  +D+V+ ++++ G++  G   E +++   M +SG  PN V++ GILS  +
Sbjct: 169 DARKVFDRMSEKDVVTCSALLCGYARKGCLEEVVRILSEMEKSGIEPNIVSWNGILSGFN 228

Query: 445 HAGLVSRGWELFNAM 459
            +G       +F  M
Sbjct: 229 RSGYHKEAVIMFQKM 243



 Score = 85.9 bits (211), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 76/303 (25%), Positives = 138/303 (45%), Gaps = 25/303 (8%)

Query: 14  LTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLF----EEMP 69
           +++ +  Y K G +     LF           NA ++G  +NG + +A  +F    E+  
Sbjct: 290 ISAMLDMYGKSGHVYGIIKLFDEFEMMETGVCNAYITGLSRNGLVDKALEMFGLFKEQKM 349

Query: 70  ERNVVSWTAMICGLADAGRVCEARKLFEEMP----ERNVVSWNSMVVGLIRNGELNEARK 125
           E NVVSWT++I G A  G+  EA +LF EM     + N V+  SM+        L   R 
Sbjct: 350 ELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNRVTIPSMLPACGNIAALGHGRS 409

Query: 126 V----FNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGE 181
                     + +V   +A+I  Y +C  +  + ++F  M  +N+V W S+++GY   G+
Sbjct: 410 THGFAVRVHLLDDVHVGSALIDMYAKCGRIKMSQIVFNMMPTKNLVCWNSLMNGYSMHGK 469

Query: 182 VEEGYCLFRRMPRK----NVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQS 237
            +E   +F  + R     + +S+T+++      G   E    F  M    + G    ++ 
Sbjct: 470 AKEVMSIFESLMRTRLKPDFISFTSLLSACGQVGLTDEGWKYFNMMSE--EYGIKPRLEH 527

Query: 238 CNSMINGYIRFGRLEEAQNLFDTVPVR-DEISWTSMIDGY-----LSVGQVSNAYYLFHN 291
            + M+N   R G+L+EA +L   +P   D   W ++++       + + +++ A  LFH 
Sbjct: 528 YSCMVNLLGRAGKLQEAYDLIKEIPFEPDSCVWGALLNSCRLQNNVDLAEIA-AQKLFHL 586

Query: 292 MPD 294
            P+
Sbjct: 587 EPE 589


>gi|42566761|ref|NP_193101.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635639|sp|Q9SVP7.2|PP307_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g13650
 gi|332657909|gb|AEE83309.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 1064

 Score =  304 bits (778), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 191/624 (30%), Positives = 300/624 (48%), Gaps = 55/624 (8%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEM------PER 71
           ++ Y   G +  A+ +F  M QR+ V+YN +++G  Q G   +A  LF+ M      P+ 
Sbjct: 330 VSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMHLDGLEPDS 389

Query: 72  NVVSWTAMIC-------------------GLADAGRV----------C----EARKLFEE 98
           N ++   + C                   G A   ++          C     A   F E
Sbjct: 390 NTLASLVVACSADGTLFRGQQLHAYTTKLGFASNNKIEGALLNLYAKCADIETALDYFLE 449

Query: 99  MPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLF 158
               NVV WN M+V      +L  + ++F  M I+ ++         ++ C+    + L 
Sbjct: 450 TEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELG 509

Query: 159 EEMEER--------NVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWN 210
           E++  +        N    + +I  Y + G+++  + +  R   K+VVSWT MI G+   
Sbjct: 510 EQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQY 569

Query: 211 GFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVR----DE 266
            F  ++L  F +M    D G   +     + ++       L+E Q +     V     D 
Sbjct: 570 NFDDKALTTFRQM---LDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDL 626

Query: 267 ISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAH 326
               +++  Y   G++  +Y  F      D +AW A++SG  Q+    EA  +F+ M   
Sbjct: 627 PFQNALVTLYSRCGKIEESYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFVRMNRE 686

Query: 327 GVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNA 386
           G+   N TF     AA  TAN+  G+Q+H V+ KT  +S+  + N LISMYAKCG I +A
Sbjct: 687 GIDNNNFTFGSAVKAASETANMKQGKQVHAVITKTGYDSETEVCNALISMYAKCGSISDA 746

Query: 387 YNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHA 446
              F  + +++ VSWN+++  +S HG  +E L  F+ M+ S   PN VT +G+LSACSH 
Sbjct: 747 EKQFLEVSTKNEVSWNAIINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSACSHI 806

Query: 447 GLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGA 506
           GLV +G   F +M   Y + P PEHYV ++++L RAG +  A+EF+  +P +PD  +W  
Sbjct: 807 GLVDKGIAYFESMNSEYGLSPKPEHYVCVVDMLTRAGLLSRAKEFIQEMPIKPDALVWRT 866

Query: 507 LLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKG 566
           LL AC     N EI E AA  LLEL+P ++  +V+L N+YA S +       R  M  KG
Sbjct: 867 LLSAC-VVHKNMEIGEFAAHHLLELEPEDSATYVLLSNLYAVSKKWDARDLTRQKMKEKG 925

Query: 567 VRKVPGCSWLMRNGGIQMFLSGDK 590
           V+K PG SW+     I  F  GD+
Sbjct: 926 VKKEPGQSWIEVKNSIHSFYVGDQ 949



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 123/469 (26%), Positives = 211/469 (44%), Gaps = 28/469 (5%)

Query: 48  MLSGFLQ-NGRLSEARRLFEEMPERNVVSWTAMICGLAD----AGRVCEARKLFEEMPER 102
           +L G L+ NG L E R+L  ++ +  + S   +   L D     G +  A K+F+EMPER
Sbjct: 90  LLEGCLKTNGSLDEGRKLHSQILKLGLDSNGCLSEKLFDFYLFKGDLYGAFKVFDEMPER 149

Query: 103 NVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMG---------- 152
            + +WN M+  L     + E   +F  M  +NV       +G +E C  G          
Sbjct: 150 TIFTWNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEACRGGSVAFDVVEQI 209

Query: 153 EAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGF 212
            A +L++ + +  VV    +I  Y R G V+    +F  +  K+  SW AMI G + N  
Sbjct: 210 HARILYQGLRDSTVVC-NPLIDLYSRNGFVDLARRVFDGLRLKDHSSWVAMISGLSKNEC 268

Query: 213 HKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVP----VRDEIS 268
             E++ LF +M  +   G      + +S+++   +   LE  + L   V       D   
Sbjct: 269 EAEAIRLFCDMYVL---GIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYV 325

Query: 269 WTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGV 328
             +++  Y  +G + +A ++F NM  RDAV +  +I+GL Q     +A  LF  M   G+
Sbjct: 326 CNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMHLDGL 385

Query: 329 PPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYN 388
            P + T + L  A  A   +  G+Q+H    K    S+  +E  L+++YAKC  I+ A +
Sbjct: 386 EPDSNTLASLVVACSADGTLFRGQQLHAYTTKLGFASNNKIEGALLNLYAKCADIETALD 445

Query: 389 IFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGL 448
            F      ++V WN M++ +        + ++F  M      PN  T+  IL  C   G 
Sbjct: 446 YFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGD 505

Query: 449 VSRGWELFNAMFDVYKIQPGPEHYVS--MINLLGRAGKIKEAEEFVLRL 495
           +  G ++ +    + K       YV   +I++  + GK+  A + ++R 
Sbjct: 506 LELGEQIHS---QIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRF 551



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 112/423 (26%), Positives = 191/423 (45%), Gaps = 42/423 (9%)

Query: 100 PERNVVSWNSMVVGLIR-NGELNEARKVFNSMPIKNVISWNAMIAG-----YVECCMMGE 153
           P    + W  ++ G ++ NG L+E RK+ +S  +K  +  N  ++      Y+    +  
Sbjct: 82  PNHQTLKW--LLEGCLKTNGSLDEGRKL-HSQILKLGLDSNGCLSEKLFDFYLFKGDLYG 138

Query: 154 AIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFH 213
           A  +F+EM ER + TW  MI        + E + LF RM  +NV        G       
Sbjct: 139 AFKVFDEMPERTIFTWNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGV------ 192

Query: 214 KESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDE-ISWTSM 272
                                +++C     G + F  +E+         +RD  +    +
Sbjct: 193 ---------------------LEACRG---GSVAFDVVEQIHARILYQGLRDSTVVCNPL 228

Query: 273 IDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLN 332
           ID Y   G V  A  +F  +  +D  +W AMISGL +NE   EA  LF +M   G+ P  
Sbjct: 229 IDLYSRNGFVDLARRVFDGLRLKDHSSWVAMISGLSKNECEAEAIRLFCDMYVLGIMPTP 288

Query: 333 ATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSN 392
             FS +  A     ++++G Q+H +++K    SD  + N L+S+Y   G + +A +IFSN
Sbjct: 289 YAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGNLISAEHIFSN 348

Query: 393 MVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRG 452
           M  RD V++N+++ G S  G   + +++F+ M   G  P+S T   ++ ACS  G + RG
Sbjct: 349 MSQRDAVTYNTLINGLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSADGTLFRG 408

Query: 453 WELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACG 512
            +L +A           +   +++NL  +   I+ A ++ L    E +  +W  +L A G
Sbjct: 409 QQL-HAYTTKLGFASNNKIEGALLNLYAKCADIETALDYFLETEVE-NVVLWNVMLVAYG 466

Query: 513 FCE 515
             +
Sbjct: 467 LLD 469



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 120/511 (23%), Positives = 221/511 (43%), Gaps = 64/511 (12%)

Query: 30  AKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRV 89
           A+ L+Q +    VV  N ++  + +NG +  ARR+F+ +  ++  SW AMI GL+     
Sbjct: 211 ARILYQGLRDSTVVC-NPLIDLYSRNGFVDLARRVFDGLRLKDHSSWVAMISGLSKNECE 269

Query: 90  CEARKLFEEMPERNVVSWN---SMVVGLIRNGELNEARKVFNSMPIK-----NVISWNAM 141
            EA +LF +M    ++      S V+   +  E  E  +  + + +K     +    NA+
Sbjct: 270 AEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNAL 329

Query: 142 IAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRM------PRK 195
           ++ Y     +  A  +F  M +R+ VT+ ++I+G  + G  E+   LF+RM      P  
Sbjct: 330 VSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMHLDGLEPDS 389

Query: 196 NVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQ 255
           N ++   +        F  + L  +    G   N      +   +++N Y +   +E A 
Sbjct: 390 NTLASLVVACSADGTLFRGQQLHAYTTKLGFASNN-----KIEGALLNLYAKCADIETAL 444

Query: 256 NLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVE 315
           + F    V + + W  M+  Y  +  + N++ +F                          
Sbjct: 445 DYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFR------------------------- 479

Query: 316 ATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLIS 375
                 +M+   + P   T+  +        +++LG QIH  ++KT  + +  + + LI 
Sbjct: 480 ------QMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCSVLID 533

Query: 376 MYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVT 435
           MYAK G +D A++I      +D+VSW +M+ G++ +   ++ L  F  ML+ G   + V 
Sbjct: 534 MYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVG 593

Query: 436 FLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRL 495
               +SAC+    +  G ++ +A   V           +++ L  R GKI+E+      L
Sbjct: 594 LTNAVSACAGLQALKEGQQI-HAQACVSGFSSDLPFQNALVTLYSRCGKIEES-----YL 647

Query: 496 PFEP----DHRIWGALLGACGFCE-GNAEIA 521
            FE     D+  W AL+   GF + GN E A
Sbjct: 648 AFEQTEAGDNIAWNALVS--GFQQSGNNEEA 676



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 82/307 (26%), Positives = 129/307 (42%), Gaps = 10/307 (3%)

Query: 272 MIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPL 331
           + D YL  G +  A+ +F  MP+R    W  MI  L    L  E   LF+ M +  V P 
Sbjct: 126 LFDFYLFKGDLYGAFKVFDEMPERTIFTWNKMIKELASRNLIGEVFGLFVRMVSENVTPN 185

Query: 332 NATFS-VLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIF 390
             TFS VL    G +   D+  QIH  ++        ++ N LI +Y++ G +D A  +F
Sbjct: 186 EGTFSGVLEACRGGSVAFDVVEQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVF 245

Query: 391 SNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVS 450
             +  +D  SW +M+ G S +    E +++F  M   G  P    F  +LSAC     + 
Sbjct: 246 DGLRLKDHSSWVAMISGLSKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLE 305

Query: 451 RGWELFNAMFDVYKIQPGPEHYV--SMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGAL- 507
            G +L      V K+    + YV  ++++L    G +  AE     +  + D   +  L 
Sbjct: 306 IGEQLHGL---VLKLGFSSDTYVCNALVSLYFHLGNLISAEHIFSNMS-QRDAVTYNTLI 361

Query: 508 --LGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLK 565
             L  CG+ E   E+ +      LE D     + VV C+      R  + H     +G  
Sbjct: 362 NGLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSADGTLFRGQQLHAYTTKLGFA 421

Query: 566 GVRKVPG 572
              K+ G
Sbjct: 422 SNNKIEG 428


>gi|115475988|ref|NP_001061590.1| Os08g0340900 [Oryza sativa Japonica Group]
 gi|38423978|dbj|BAD01706.1| PPR-repeat protein-like [Oryza sativa Japonica Group]
 gi|38637396|dbj|BAD03655.1| PPR-repeat protein-like [Oryza sativa Japonica Group]
 gi|113623559|dbj|BAF23504.1| Os08g0340900 [Oryza sativa Japonica Group]
 gi|215686971|dbj|BAG90841.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 819

 Score =  304 bits (778), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 191/621 (30%), Positives = 302/621 (48%), Gaps = 51/621 (8%)

Query: 15  TSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEM------ 68
           T+ I  Y+K G +DEA  +F  +P R  V++N +++G+ Q G    A  LF+ M      
Sbjct: 159 TALINLYAKLGCMDEAMLVFHALPVRTPVTWNTVITGYAQIGCGGVALELFDRMGIEGVR 218

Query: 69  PERNVVSWTAMIC---GLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARK 125
           P+R V++     C   G  + GR       +    E +    N ++    +   L+ ARK
Sbjct: 219 PDRFVLASAVSACSALGFLEGGRQIHGYA-YRSATETDTSVINVLIDLYCKCSRLSAARK 277

Query: 126 VFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERN------------------VV 167
           +F+ M  +N++SW  MI+GY++     EAI +F  M +                      
Sbjct: 278 LFDCMEYRNLVSWTTMISGYMQNSFNAEAITMFWNMTQAGWQPDGFACTSILNSCGSLAA 337

Query: 168 TW---------------------TSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGG 206
            W                      ++I  Y +   + E   +F  +   + +S+ AMI G
Sbjct: 338 IWQGRQIHAHVIKADLEADEYVKNALIDMYAKCEHLTEARAVFDALAEDDAISYNAMIEG 397

Query: 207 FAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLF-DTVPVRD 265
           ++ N    E++ +F  M+      +     S   + +  +     ++   L   +    D
Sbjct: 398 YSKNRDLAEAVNIFQRMRFFSLRPSLLTFVSLLGVSSSQLAIELSKQIHGLIIKSGTSLD 457

Query: 266 EISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRA 325
             + +++ID Y     V++A  +F+ +  +D V W +MI G  QNE   EA  LF ++  
Sbjct: 458 LYAASALIDVYSKCSLVNDAKTVFNMLHYKDMVIWNSMIFGHAQNEQGEEAIKLFNQLLL 517

Query: 326 HGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDN 385
            G+ P   TF  L   A   A++  G+Q H  ++K   ++D  + N LI MYAKCG I  
Sbjct: 518 SGMAPNEFTFVALVTVASTLASMFHGQQFHAWIIKAGVDNDPHVSNALIDMYAKCGFIKE 577

Query: 386 AYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSH 445
              +F +    D++ WNSM+  ++ HG A E L+VF  M E+   PN VTF+G+LSAC+H
Sbjct: 578 GRMLFESTCGEDVICWNSMITTYAQHGHAEEALQVFRLMGEAEVEPNYVTFVGVLSACAH 637

Query: 446 AGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWG 505
           AG V  G   FN+M   Y I+PG EHY S++NL GR+GK+  A+EF+ R+P +P   +W 
Sbjct: 638 AGFVGEGLNHFNSMKSNYDIEPGIEHYASVVNLFGRSGKLHAAKEFIERMPIKPAAAVWR 697

Query: 506 ALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLK 565
           +LL AC    GNAEI  +AA+  L  DP ++  +V+L NIYA+ G   + H LR  M   
Sbjct: 698 SLLSACHLF-GNAEIGRYAAEMALLADPTDSGPYVLLSNIYASKGLWADVHNLRQQMDSS 756

Query: 566 GVRKVPGCSWLMRNGGIQMFL 586
           G  K  GCSW+     +  F+
Sbjct: 757 GTVKETGCSWIEVTKEVHTFI 777



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 84/321 (26%), Positives = 147/321 (45%), Gaps = 7/321 (2%)

Query: 172 MISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEM-KGICDNG 230
           ++ GY   G + +   LF RMP +N+VSW ++I  +  +G    ++ LF+   K  C+  
Sbjct: 59  LLRGYSNLGRLRDARHLFDRMPHRNLVSWGSVISMYTQHGRDDCAISLFVAFQKASCEVP 118

Query: 231 NNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEIS-WTSMIDGYLSVGQVSNAYYLF 289
           N   + S              E+   +   + +   +   T++I+ Y  +G +  A  +F
Sbjct: 119 NEFLLASVLRACTQSKAVSLGEQVHGIAVKLDLDANVYVGTALINLYAKLGCMDEAMLVF 178

Query: 290 HNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANID 349
           H +P R  V W  +I+G  Q      A  LF  M   GV P     +    A  A   ++
Sbjct: 179 HALPVRTPVTWNTVITGYAQIGCGGVALELFDRMGIEGVRPDRFVLASAVSACSALGFLE 238

Query: 350 LGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFS 409
            GRQIH    ++ +E+D  + N LI +Y KC  +  A  +F  M  R+LVSW +M+ G+ 
Sbjct: 239 GGRQIHGYAYRSATETDTSVINVLIDLYCKCSRLSAARKLFDCMEYRNLVSWTTMISGYM 298

Query: 410 HHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGP 469
            +    E + +F +M ++G  P+      IL++C   G ++  W+       V K     
Sbjct: 299 QNSFNAEAITMFWNMTQAGWQPDGFACTSILNSC---GSLAAIWQGRQIHAHVIKADLEA 355

Query: 470 EHYV--SMINLLGRAGKIKEA 488
           + YV  ++I++  +   + EA
Sbjct: 356 DEYVKNALIDMYAKCEHLTEA 376



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 56/233 (24%), Positives = 91/233 (39%), Gaps = 46/233 (19%)

Query: 366 DLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESML 425
           DL L N L+  Y+  G + +A ++F  M  R+LVSW S++  ++ HG  +  + +F +  
Sbjct: 52  DLFLTNLLLRGYSNLGRLRDARHLFDRMPHRNLVSWGSVISMYTQHGRDDCAISLFVAFQ 111

Query: 426 ESGTH-PNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYV--SMINLLGRA 482
           ++    PN      +L AC+ +  VS G ++        K+      YV  ++INL  + 
Sbjct: 112 KASCEVPNEFLLASVLRACTQSKAVSLGEQVHGI---AVKLDLDANVYVGTALINLYAKL 168

Query: 483 GKIKEAEEFVLRLP----------------------------------FEPDHRIWGALL 508
           G + EA      LP                                    PD  +  + +
Sbjct: 169 GCMDEAMLVFHALPVRTPVTWNTVITGYAQIGCGGVALELFDRMGIEGVRPDRFVLASAV 228

Query: 509 GAC---GFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKL 558
            AC   GF EG  +I  +A +   E D        VL ++Y    R     KL
Sbjct: 229 SACSALGFLEGGRQIHGYAYRSATETD---TSVINVLIDLYCKCSRLSAARKL 278


>gi|15232837|ref|NP_186850.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75193830|sp|Q9S7F4.1|PP206_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At2g01510
 gi|6091739|gb|AAF03451.1|AC010797_27 hypothetical protein [Arabidopsis thaliana]
 gi|6513930|gb|AAF14834.1|AC011664_16 hypothetical protein [Arabidopsis thaliana]
 gi|332640228|gb|AEE73749.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 825

 Score =  303 bits (777), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 193/662 (29%), Positives = 322/662 (48%), Gaps = 87/662 (13%)

Query: 23  KRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNV--------- 73
           +RG +  A+ ++  MP +N VS N M+SG ++ G +S AR LF+ MP+R V         
Sbjct: 60  RRGQVSAARKVYDEMPHKNTVSTNTMISGHVKTGDVSSARDLFDAMPDRTVVTWTILMGW 119

Query: 74  ----------------------------VSWTAMICGLADA------GRV---------- 89
                                       V++T ++ G  DA      G+V          
Sbjct: 120 YARNSHFDEAFKLFRQMCRSSSCTLPDHVTFTTLLPGCNDAVPQNAVGQVHAFAVKLGFD 179

Query: 90  ---------------CEARKL------FEEMPERNVVSWNSMVVGLIRNGELNEARKVFN 128
                          CE R+L      FEE+PE++ V++N+++ G  ++G   E+  +F 
Sbjct: 180 TNPFLTVSNVLLKSYCEVRRLDLACVLFEEIPEKDSVTFNTLITGYEKDGLYTESIHLFL 239

Query: 129 SMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTS--------MISGYCRAG 180
            M        +   +G ++  +      L +++   +V T  S        ++  Y +  
Sbjct: 240 KMRQSGHQPSDFTFSGVLKAVVGLHDFALGQQLHALSVTTGFSRDASVGNQILDFYSKHD 299

Query: 181 EVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNS 240
            V E   LF  MP  + VS+  +I  ++    ++ SL  F EM+ +  +  N    +  S
Sbjct: 300 RVLETRMLFDEMPELDFVSYNVVISSYSQADQYEASLHFFREMQCMGFDRRNFPFATMLS 359

Query: 241 MINGY--IRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAV 298
           +      ++ GR    Q L  T      +   S++D Y        A  +F ++P R  V
Sbjct: 360 IAANLSSLQMGRQLHCQALLATADSILHVG-NSLVDMYAKCEMFEEAELIFKSLPQRTTV 418

Query: 299 AWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVL 358
           +WTA+ISG VQ  L      LF +MR   +    +TF+ +  A+ + A++ LG+Q+H  +
Sbjct: 419 SWTALISGYVQKGLHGAGLKLFTKMRGSNLRADQSTFATVLKASASFASLLLGKQLHAFI 478

Query: 359 MKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETL 418
           +++ +  ++   + L+ MYAKCG I +A  +F  M  R+ VSWN+++   + +G     +
Sbjct: 479 IRSGNLENVFSGSGLVDMYAKCGSIKDAVQVFEEMPDRNAVSWNALISAHADNGDGEAAI 538

Query: 419 KVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINL 478
             F  M+ESG  P+SV+ LG+L+ACSH G V +G E F AM  +Y I P  +HY  M++L
Sbjct: 539 GAFAKMIESGLQPDSVSILGVLTACSHCGFVEQGTEYFQAMSPIYGITPKKKHYACMLDL 598

Query: 479 LGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPL-NAP 537
           LGR G+  EAE+ +  +PFEPD  +W ++L AC     N  +AE AA++L  ++ L +A 
Sbjct: 599 LGRNGRFAEAEKLMDEMPFEPDEIMWSSVLNACRI-HKNQSLAERAAEKLFSMEKLRDAA 657

Query: 538 AHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAE 597
           A+V + NIYAA+G   +   ++  M  +G++KVP  SW+  N  I +F S D+      E
Sbjct: 658 AYVSMSNIYAAAGEWEKVRDVKKAMRERGIKKVPAYSWVEVNHKIHVFSSNDQTHPNGDE 717

Query: 598 IL 599
           I+
Sbjct: 718 IV 719



 Score =  189 bits (480), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 133/503 (26%), Positives = 237/503 (47%), Gaps = 26/503 (5%)

Query: 46  NAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVV 105
           N ++   L+ G++S AR++++EMP +N VS   MI G    G V  AR LF+ MP+R VV
Sbjct: 52  NFIVEDLLRRGQVSAARKVYDEMPHKNTVSTNTMISGHVKTGDVSSARDLFDAMPDRTVV 111

Query: 106 SWNSMVVGLIRNGELNEARKVFNSM------PIKNVISWNAMIAG---YVECCMMGE--A 154
           +W  ++    RN   +EA K+F  M       + + +++  ++ G    V    +G+  A
Sbjct: 112 TWTILMGWYARNSHFDEAFKLFRQMCRSSSCTLPDHVTFTTLLPGCNDAVPQNAVGQVHA 171

Query: 155 IVLFEEMEERNVVTWTS-MISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFH 213
             +    +    +T ++ ++  YC    ++    LF  +P K+ V++  +I G+  +G +
Sbjct: 172 FAVKLGFDTNPFLTVSNVLLKSYCEVRRLDLACVLFEEIPEKDSVTFNTLITGYEKDGLY 231

Query: 214 KESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPV-RDEISWTSM 272
            ES+ LF++M+      ++         + G   F   ++   L  T    RD      +
Sbjct: 232 TESIHLFLKMRQSGHQPSDFTFSGVLKAVVGLHDFALGQQLHALSVTTGFSRDASVGNQI 291

Query: 273 IDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLN 332
           +D Y    +V     LF  MP+ D V++  +IS   Q + +  + + F EM+  G    N
Sbjct: 292 LDFYSKHDRVLETRMLFDEMPELDFVSYNVVISSYSQADQYEASLHFFREMQCMGFDRRN 351

Query: 333 ATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSN 392
             F+ +   A   +++ +GRQ+HC  +   ++S L + N L+ MYAKC + + A  IF +
Sbjct: 352 FPFATMLSIAANLSSLQMGRQLHCQALLATADSILHVGNSLVDMYAKCEMFEEAELIFKS 411

Query: 393 MVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSA-CSHAGLVSR 451
           +  R  VSW +++ G+   GL    LK+F  M  S    +  TF  +L A  S A L   
Sbjct: 412 LPQRTTVSWTALISGYVQKGLHGAGLKLFTKMRGSNLRADQSTFATVLKASASFASL--- 468

Query: 452 GWELFNAMFDVYKIQPGPEHYV----SMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGAL 507
              L       + I+ G    V     ++++  + G IK+A +    +P + +   W AL
Sbjct: 469 ---LLGKQLHAFIIRSGNLENVFSGSGLVDMYAKCGSIKDAVQVFEEMP-DRNAVSWNAL 524

Query: 508 LGACGFCEGNAEIAEHAAKRLLE 530
           + A     G+ E A  A  +++E
Sbjct: 525 ISAHA-DNGDGEAAIGAFAKMIE 546



 Score =  111 bits (278), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 63/221 (28%), Positives = 113/221 (51%), Gaps = 4/221 (1%)

Query: 226 ICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNA 285
           I   G + +    N ++   +R G++  A+ ++D +P ++ +S  +MI G++  G VS+A
Sbjct: 39  IIKTGFDTDTCRSNFIVEDLLRRGQVSAARKVYDEMPHKNTVSTNTMISGHVKTGDVSSA 98

Query: 286 YYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEM--RAHGVPPLNATFSVLFGAAG 343
             LF  MPDR  V WT ++    +N  F EA  LF +M   +    P + TF+ L     
Sbjct: 99  RDLFDAMPDRTVVTWTILMGWYARNSHFDEAFKLFRQMCRSSSCTLPDHVTFTTLLPGCN 158

Query: 344 ATANIDLGRQIHCVLMKTESESD--LILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSW 401
                +   Q+H   +K   +++  L + N L+  Y +   +D A  +F  +  +D V++
Sbjct: 159 DAVPQNAVGQVHAFAVKLGFDTNPFLTVSNVLLKSYCEVRRLDLACVLFEEIPEKDSVTF 218

Query: 402 NSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSA 442
           N+++ G+   GL  E++ +F  M +SG  P+  TF G+L A
Sbjct: 219 NTLITGYEKDGLYTESIHLFLKMRQSGHQPSDFTFSGVLKA 259



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 73/297 (24%), Positives = 132/297 (44%), Gaps = 36/297 (12%)

Query: 11  VVHLTSSITK-YSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMP 69
           ++H+ +S+   Y+K    +EA+ +F+ +PQR  VS+ A++SG++Q G      +LF +M 
Sbjct: 385 ILHVGNSLVDMYAKCEMFEEAELIFKSLPQRTTVSWTALISGYVQKGLHGAGLKLFTKMR 444

Query: 70  ERNVVSWTAMICGLADAGRVCEARKLFEEMPE--------RNVVSWNSMVVGLIRNGELN 121
             N+ +  +    +  A     +  L +++           NV S + +V    + G + 
Sbjct: 445 GSNLRADQSTFATVLKASASFASLLLGKQLHAFIIRSGNLENVFSGSGLVDMYAKCGSIK 504

Query: 122 EARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEER----NVVTWTSMISGYC 177
           +A +VF  MP +N +SWNA+I+ + +      AI  F +M E     + V+   +++   
Sbjct: 505 DAVQVFEEMPDRNAVSWNALISAHADNGDGEAAIGAFAKMIESGLQPDSVSILGVLTACS 564

Query: 178 RAGEVEEGYCLFRRM-------PRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDN- 229
             G VE+G   F+ M       P+K    +  M+     NG   E+  L  EM    D  
Sbjct: 565 HCGFVEQGTEYFQAMSPIYGITPKKK--HYACMLDLLGRNGRFAEAEKLMDEMPFEPDEI 622

Query: 230 -----GNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQ 281
                 N C +    S+            A+ LF    +RD  ++ SM + Y + G+
Sbjct: 623 MWSSVLNACRIHKNQSLAE--------RAAEKLFSMEKLRDAAAYVSMSNIYAAAGE 671


>gi|255584555|ref|XP_002533004.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223527215|gb|EEF29379.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 519

 Score =  303 bits (776), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 164/456 (35%), Positives = 260/456 (57%), Gaps = 28/456 (6%)

Query: 157 LFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVV-----------SWTAMIG 205
           LF+EM E +V++ T++I  + R    EE  CLF RM   N+            S T +  
Sbjct: 55  LFDEMPELDVLSVTTLIGRFARQHRYEEAMCLFSRMLLLNIKPNEFTFATVIHSSTGLKN 114

Query: 206 GFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRD 265
            +     H  ++ +          G N  V   ++M++ Y +    EEA+N F+ +   +
Sbjct: 115 IYLGKQLHARTMKM----------GLNTIVFVGSAMLDFYAKLCSFEEARNAFEDIQKPN 164

Query: 266 EISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRA 325
            +S+T++I GYL  G++ +A  LF  MP+R+ V+W AM+ G  Q     EA  LF+EM  
Sbjct: 165 VVSYTTLIHGYLKKGKIDDALQLFQEMPERNVVSWNAMVGGFSQMGHNEEAVSLFIEMLR 224

Query: 326 HGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDN 385
            G  P  +TF     +A   A++ +G+  H   +K+   SD+ + N L+S YAKCG +++
Sbjct: 225 EGFMPNQSTFPCAITSAANMASLGMGKSFHACAVKSLCTSDVFVCNSLVSFYAKCGSMED 284

Query: 386 AYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSH 445
           +  +F+ +  R+ VSWN+++ GF+ +G   + +  FE M  +G  PNSVT LG+L AC+H
Sbjct: 285 SLLVFNELPDRNTVSWNAVICGFAQNGRGEDAVIFFERMRAAGLRPNSVTLLGLLCACNH 344

Query: 446 AGLVSRGWELFNAMFDVYKIQPG---PEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHR 502
           AGLV +G+  FN M    + +PG   PEHY  M++LL R G++KEA +F+  LPF+P   
Sbjct: 345 AGLVEKGYMYFNQM---RQEEPGILKPEHYACMVDLLSRFGRLKEAAKFLHDLPFDPGTG 401

Query: 503 IWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDM 562
            W ALLG C     NAE+++ AA+++L LDP +  ++V+L N Y+A+GR  +   +R +M
Sbjct: 402 FWKALLGGCHI-HSNAELSDLAAQKILALDPEDVSSYVMLSNAYSAAGRWQQVSTIRREM 460

Query: 563 GLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
             KG++++PGCSW+     I +FL+ DK   Q  EI
Sbjct: 461 KEKGLKRIPGCSWIEVRSKIHVFLNSDKNHHQKEEI 496



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 102/359 (28%), Positives = 173/359 (48%), Gaps = 40/359 (11%)

Query: 60  EARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGE 119
           +   LF+EMPE +V+S T +I   A   R  EA  LF  M   N           I+  E
Sbjct: 51  DVDELFDEMPELDVLSVTTLIGRFARQHRYEEAMCLFSRMLLLN-----------IKPNE 99

Query: 120 LNEARKVFNSMPIKN-------------------VISWNAMIAGYVECCMMGEAIVLFEE 160
              A  + +S  +KN                   V   +AM+  Y + C   EA   FE+
Sbjct: 100 FTFATVIHSSTGLKNIYLGKQLHARTMKMGLNTIVFVGSAMLDFYAKLCSFEEARNAFED 159

Query: 161 MEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLF 220
           +++ NVV++T++I GY + G++++   LF+ MP +NVVSW AM+GGF+  G ++E++ LF
Sbjct: 160 IQKPNVVSYTTLIHGYLKKGKIDDALQLFQEMPERNVVSWNAMVGGFSQMGHNEEAVSLF 219

Query: 221 IEM--KGICDNGNN--CNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGY 276
           IEM  +G   N +   C + S  +M +  +  G+   A  +  ++   D     S++  Y
Sbjct: 220 IEMLREGFMPNQSTFPCAITSAANMAS--LGMGKSFHACAV-KSLCTSDVFVCNSLVSFY 276

Query: 277 LSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFS 336
              G + ++  +F+ +PDR+ V+W A+I G  QN    +A   F  MRA G+ P + T  
Sbjct: 277 AKCGSMEDSLLVFNELPDRNTVSWNAVICGFAQNGRGEDAVIFFERMRAAGLRPNSVTLL 336

Query: 337 VLFGAAGATANIDLGRQIHCVLMKTESESDLILEN--CLISMYAKCGVIDNAYNIFSNM 393
            L  A      ++ G  ++   M+ E    L  E+  C++ + ++ G +  A     ++
Sbjct: 337 GLLCACNHAGLVEKG-YMYFNQMRQEEPGILKPEHYACMVDLLSRFGRLKEAAKFLHDL 394



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 78/269 (28%), Positives = 136/269 (50%), Gaps = 17/269 (6%)

Query: 21  YSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMI 80
           Y+K    +EA+  F+ + + NVVSY  ++ G+L+ G++ +A +LF+EMPERNVVSW AM+
Sbjct: 144 YAKLCSFEEARNAFEDIQKPNVVSYTTLIHGYLKKGKIDDALQLFQEMPERNVVSWNAMV 203

Query: 81  CGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEAR----KVFNSMPIK--- 133
            G +  G   EA  LF EM     +   S     I +   N A     K F++  +K   
Sbjct: 204 GGFSQMGHNEEAVSLFIEMLREGFMPNQSTFPCAITSAA-NMASLGMGKSFHACAVKSLC 262

Query: 134 --NVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRR 191
             +V   N++++ Y +C  M +++++F E+ +RN V+W ++I G+ + G  E+    F R
Sbjct: 263 TSDVFVCNSLVSFYAKCGSMEDSLLVFNELPDRNTVSWNAVICGFAQNGRGEDAVIFFER 322

Query: 192 MP----RKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIR 247
           M     R N V+   ++      G  ++  + F +M+   +       +    M++   R
Sbjct: 323 MRAAGLRPNSVTLLGLLCACNHAGLVEKGYMYFNQMRQ--EEPGILKPEHYACMVDLLSR 380

Query: 248 FGRLEEAQNLFDTVPVRDEIS-WTSMIDG 275
           FGRL+EA      +P       W +++ G
Sbjct: 381 FGRLKEAAKFLHDLPFDPGTGFWKALLGG 409



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 79/277 (28%), Positives = 136/277 (49%), Gaps = 21/277 (7%)

Query: 46  NAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVV 105
           +AML  + +     EAR  FE++ + NVVS+T +I G    G++ +A +LF+EMPERNVV
Sbjct: 138 SAMLDFYAKLCSFEEARNAFEDIQKPNVVSYTTLIHGYLKKGKIDDALQLFQEMPERNVV 197

Query: 106 SWNSMVVGLIRNGELNEARKVF------NSMPIKNVISWNAMIAGYVECCMMGEAI--VL 157
           SWN+MV G  + G   EA  +F        MP ++        A  +    MG++     
Sbjct: 198 SWNAMVGGFSQMGHNEEAVSLFIEMLREGFMPNQSTFPCAITSAANMASLGMGKSFHACA 257

Query: 158 FEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESL 217
            + +   +V    S++S Y + G +E+   +F  +P +N VSW A+I GFA NG  ++++
Sbjct: 258 VKSLCTSDVFVCNSLVSFYAKCGSMEDSLLVFNELPDRNTVSWNAVICGFAQNGRGEDAV 317

Query: 218 LLFIEMKGICDNGNNCNVQ----SCNS---MINGYIRFGRLEEAQNLFDTVPVRDEISWT 270
           + F  M+      N+  +     +CN    +  GY+ F ++ + +       +     + 
Sbjct: 318 IFFERMRAAGLRPNSVTLLGLLCACNHAGLVEKGYMYFNQMRQEEP-----GILKPEHYA 372

Query: 271 SMIDGYLSVGQVSNAYYLFHNMP-DRDAVAWTAMISG 306
            M+D     G++  A    H++P D     W A++ G
Sbjct: 373 CMVDLLSRFGRLKEAAKFLHDLPFDPGTGFWKALLGG 409



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 71/201 (35%), Positives = 102/201 (50%), Gaps = 20/201 (9%)

Query: 8   KSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEE 67
           K  VV  T+ I  Y K+G ID+A  LFQ MP+RNVVS+NAM+ GF Q G   EA  LF E
Sbjct: 162 KPNVVSYTTLIHGYLKKGKIDDALQLFQEMPERNVVSWNAMVGGFSQMGHNEEAVSLFIE 221

Query: 68  ------MPERN-----VVSWTAMIC-GLADAGRVCEARKLFEEMPERNVVSWNSMVVGLI 115
                 MP ++     + S   M   G+  +   C  + L       +V   NS+V    
Sbjct: 222 MLREGFMPNQSTFPCAITSAANMASLGMGKSFHACAVKSLCTS----DVFVCNSLVSFYA 277

Query: 116 RNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEME----ERNVVTWTS 171
           + G + ++  VFN +P +N +SWNA+I G+ +     +A++ FE M       N VT   
Sbjct: 278 KCGSMEDSLLVFNELPDRNTVSWNAVICGFAQNGRGEDAVIFFERMRAAGLRPNSVTLLG 337

Query: 172 MISGYCRAGEVEEGYCLFRRM 192
           ++     AG VE+GY  F +M
Sbjct: 338 LLCACNHAGLVEKGYMYFNQM 358


>gi|359492781|ref|XP_002278504.2| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 658

 Score =  303 bits (776), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 163/480 (33%), Positives = 260/480 (54%), Gaps = 40/480 (8%)

Query: 120 LNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRA 179
           L  A +VF  MP ++VISWN+MI+ Y+    +  AI L ++M ERN+VTW S++ G  +A
Sbjct: 126 LGSAYRVFEEMPERDVISWNSMISAYMTRGEIQSAIGLLDKMPERNIVTWNSVVCGLSKA 185

Query: 180 GEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCN 239
           G +E  + +F +MP +N VSW                                      N
Sbjct: 186 GNMELAHSVFEQMPLRNEVSW--------------------------------------N 207

Query: 240 SMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVA 299
           SMI+GY+R G +  AQ++F  +P +  +SWT+MI GY + G + +A  +F++MP ++ V+
Sbjct: 208 SMISGYVRIGDVRAAQSIFYQMPEKTVVSWTAMISGYATNGDLKSAENIFNHMPVKNVVS 267

Query: 300 WTAMISGLVQNELFVEATYLFMEMRAHG-VPPLNATFSVLFGAAGATANIDLGRQIHCVL 358
           W AMISG V N  F +A  +F  M  +G   P   T   +  A     +++ G+ I+  +
Sbjct: 268 WNAMISGYVHNHEFDQALCVFHHMLINGECRPDQTTLISILSACAHLGSLEHGKWINSYI 327

Query: 359 MKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETL 418
            K +    + L N LI M+AKCG ++NA  +F +M  R +++W +MV G + +G   E +
Sbjct: 328 KKNKLHLSIPLGNALIDMFAKCGDVENAKEVFHHMSKRCIITWTTMVSGLAVNGKCREAI 387

Query: 419 KVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINL 478
            +F+ M   GT P+ V F+ +LSAC+H GLV  G  +F+ M   + I+P  EHY  M++L
Sbjct: 388 NLFDKMCLEGTKPDDVIFIAVLSACTHGGLVEEGKRVFDQMVQEFGIKPRIEHYGCMVDL 447

Query: 479 LGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPA 538
           LGRAGK++EA  F  R+  +P+  IW  LL  C    GN ++ +   +++++ +P N   
Sbjct: 448 LGRAGKLEEAVRFTARMHLKPNAVIWATLLFCCKI-HGNGDLLKSVTEKIMDQEPSNPSY 506

Query: 539 HVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
             ++ N+ A+ GR  +    R+ M  + + KVPGCS +     +  FL+ D    Q  EI
Sbjct: 507 LTLVSNLSASFGRWEDVLSFRVAMRQQRMEKVPGCSSIQVGNRVHEFLAKDTRHVQRKEI 566



 Score =  206 bits (524), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 133/418 (31%), Positives = 215/418 (51%), Gaps = 26/418 (6%)

Query: 41  NVVSYNAMLSGFLQN--GRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEE 98
           +V   N++L GF  N    L  A R+FEEMPER+V+SW +MI      G +  A  L ++
Sbjct: 108 SVFVQNSLL-GFYANCSENLGSAYRVFEEMPERDVISWNSMISAYMTRGEIQSAIGLLDK 166

Query: 99  MPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLF 158
           MPERN+V+WNS+V GL + G +  A  VF  MP++N +SWN+MI+GYV    +  A  +F
Sbjct: 167 MPERNIVTWNSVVCGLSKAGNMELAHSVFEQMPLRNEVSWNSMISGYVRIGDVRAAQSIF 226

Query: 159 EEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLL 218
            +M E+ VV+WT+MISGY   G+++    +F  MP KNVVSW AMI G+  N    ++L 
Sbjct: 227 YQMPEKTVVSWTAMISGYATNGDLKSAENIFNHMPVKNVVSWNAMISGYVHNHEFDQALC 286

Query: 219 LFIEM--KGICDNGNNCNVQSCNSMINGYIRFGRLEEAQ---------NLFDTVPVRDEI 267
           +F  M   G C       +    S+++     G LE  +          L  ++P+ +  
Sbjct: 287 VFHHMLINGECRPDQTTLI----SILSACAHLGSLEHGKWINSYIKKNKLHLSIPLGN-- 340

Query: 268 SWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHG 327
              ++ID +   G V NA  +FH+M  R  + WT M+SGL  N    EA  LF +M   G
Sbjct: 341 ---ALIDMFAKCGDVENAKEVFHHMSKRCIITWTTMVSGLAVNGKCREAINLFDKMCLEG 397

Query: 328 VPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILE-NCLISMYAKCGVIDNA 386
             P +  F  +  A      ++ G+++   +++       I    C++ +  + G ++ A
Sbjct: 398 TKPDDVIFIAVLSACTHGGLVEEGKRVFDQMVQEFGIKPRIEHYGCMVDLLGRAGKLEEA 457

Query: 387 YNIFSNM-VSRDLVSWNSMVMGFSHHGLANETLKVFESMLES-GTHPNSVTFLGILSA 442
               + M +  + V W +++     HG  +    V E +++   ++P+ +T +  LSA
Sbjct: 458 VRFTARMHLKPNAVIWATLLFCCKIHGNGDLLKSVTEKIMDQEPSNPSYLTLVSNLSA 515



 Score =  162 bits (411), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 101/344 (29%), Positives = 170/344 (49%), Gaps = 49/344 (14%)

Query: 7   PKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFE 66
           P+  V+   S I+ Y  RG I  A  L   MP+RN+V++N+++ G  + G +  A  +FE
Sbjct: 137 PERDVISWNSMISAYMTRGEIQSAIGLLDKMPERNIVTWNSVVCGLSKAGNMELAHSVFE 196

Query: 67  EMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKV 126
           +MP RN VSW +MI G    G V  A+ +F +MPE+ VVSW +M+ G   NG+L  A  +
Sbjct: 197 QMPLRNEVSWNSMISGYVRIGDVRAAQSIFYQMPEKTVVSWTAMISGYATNGDLKSAENI 256

Query: 127 FNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEM--------EERNVVT---------- 168
           FN MP+KNV+SWNAMI+GYV      +A+ +F  M        ++  +++          
Sbjct: 257 FNHMPVKNVVSWNAMISGYVHNHEFDQALCVFHHMLINGECRPDQTTLISILSACAHLGS 316

Query: 169 -----W-----------------TSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGG 206
                W                  ++I  + + G+VE    +F  M ++ +++WT M+ G
Sbjct: 317 LEHGKWINSYIKKNKLHLSIPLGNALIDMFAKCGDVENAKEVFHHMSKRCIITWTTMVSG 376

Query: 207 FAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVP---- 262
            A NG  +E++ LF +M   C  G   +     ++++     G +EE + +FD +     
Sbjct: 377 LAVNGKCREAINLFDKM---CLEGTKPDDVIFIAVLSACTHGGLVEEGKRVFDQMVQEFG 433

Query: 263 VRDEIS-WTSMIDGYLSVGQVSNAYYLFHNMPDR-DAVAWTAMI 304
           ++  I  +  M+D     G++  A      M  + +AV W  ++
Sbjct: 434 IKPRIEHYGCMVDLLGRAGKLEEAVRFTARMHLKPNAVIWATLL 477



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 52/196 (26%), Positives = 94/196 (47%), Gaps = 11/196 (5%)

Query: 315 EATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLI 374
           EA  ++  M+A  V   + TF+ L      +  ++ GR IH  ++K    S + ++N L+
Sbjct: 57  EALRVYSRMKALMVEANSFTFTFLLKCFETSQALEDGRVIHGEILKLGFGSSVFVQNSLL 116

Query: 375 SMYAKCGV-IDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNS 433
             YA C   + +AY +F  M  RD++SWNSM+  +   G     + + + M E     N 
Sbjct: 117 GFYANCSENLGSAYRVFEEMPERDVISWNSMISAYMTRGEIQSAIGLLDKMPER----NI 172

Query: 434 VTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVL 493
           VT+  ++   S AG      EL +++F+   ++     + SMI+   R G ++ A+    
Sbjct: 173 VTWNSVVCGLSKAG----NMELAHSVFEQMPLR-NEVSWNSMISGYVRIGDVRAAQSIFY 227

Query: 494 RLPFEPDHRIWGALLG 509
           ++P E     W A++ 
Sbjct: 228 QMP-EKTVVSWTAMIS 242


>gi|302819822|ref|XP_002991580.1| hypothetical protein SELMODRAFT_478 [Selaginella moellendorffii]
 gi|300140613|gb|EFJ07334.1| hypothetical protein SELMODRAFT_478 [Selaginella moellendorffii]
          Length = 560

 Score =  303 bits (776), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 166/540 (30%), Positives = 284/540 (52%), Gaps = 14/540 (2%)

Query: 7   PKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFE 66
           P+   V +TS +  Y++   ++ +K +F  +P+R+ VS+ A+LS    NG L E   +F+
Sbjct: 29  PERSTVAMTSMVVAYAENDALEISKVMFDRIPERDPVSWTALLSVNATNGHLVEVINIFD 88

Query: 67  EMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKV 126
            MP+R+   W  M+   +D G +   +  F  MP R  VSWN+++    + G L  A++ 
Sbjct: 89  RMPKRSWRCWQTMLSAYSDHGDLENTKLTFATMPYRGSVSWNALLGAYAQTGHLESAKEF 148

Query: 127 FNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGY 186
           F+ MP  + +SW  +   Y +   + E+   F+ + +R++V+W S++S Y R   +++  
Sbjct: 149 FDRMPQCDTVSWTIVSEAYAQRGHIQESRWFFDNVPDRDLVSWNSIMSAYARRALIDDAR 208

Query: 187 CLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYI 246
            +F  + R NV SW  MI  +  NG   E+  +F EM          NV S N+++  Y 
Sbjct: 209 RVFEGILRPNVFSWNTMIAAYTQNGHFDEARRVFGEMP-------RKNVVSWNTLLAAYS 261

Query: 247 RFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVG---QVSNAYYLFHNMPDRDAVAWTAM 303
             G L EA+ +FD +P +D ISW S++  Y   G   +V+ A  +F  M +RD ++W  M
Sbjct: 262 ERGMLCEAKEMFDRMPQKDVISWNSLVTAYAQNGHILRVAAAREIFDTMRERDLISWNTM 321

Query: 304 ISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVL---MK 360
           I+   Q+    E  +LF  M  +G  P + T   +  A  A  +++ G+ IH  +    +
Sbjct: 322 IAAYAQSGDGEEGIHLFRIMDLYGEAPDSITLIAVLDACTAARSLERGKTIHAAIRAGTR 381

Query: 361 TESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKV 420
            +  + L++   L++MY   G ++ A   F  +  RD+ +W ++++  + +G     L++
Sbjct: 382 LDLTTHLLVLTALVNMYGNLGCVELAMEAFQGIQRRDVTAWTAVIVAHARNGHGGAALEL 441

Query: 421 FESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLG 480
           F      G  P++V FL IL+ACSHAGL+  G + F A+   Y +    EHY  +I++LG
Sbjct: 442 FREFGLEGMQPDAVAFLSILTACSHAGLLYSGRDFFVALHGDYNVGVTLEHYRCVIDMLG 501

Query: 481 RAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHV 540
           R G+++ AEE +  +PF+ D   W  LLGAC   +G+A   +  A+    LDP  A  +V
Sbjct: 502 RLGQLELAEEVIRGMPFKADFVSWVTLLGACK-TQGDAHRGQRVAEAASSLDPGVASPYV 560



 Score =  149 bits (375), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 101/351 (28%), Positives = 174/351 (49%), Gaps = 54/351 (15%)

Query: 5   NHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRL 64
           N P   +V   S ++ Y++R  ID+A+ +F+ + + NV S+N M++ + QNG   EARR+
Sbjct: 182 NVPDRDLVSWNSIMSAYARRALIDDARRVFEGILRPNVFSWNTMIAAYTQNGHFDEARRV 241

Query: 65  FEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGEL---N 121
           F EMP +NVVSW  ++   ++ G +CEA+++F+ MP+++V+SWNS+V    +NG +    
Sbjct: 242 FGEMPRKNVVSWNTLLAAYSERGMLCEAKEMFDRMPQKDVISWNSLVTAYAQNGHILRVA 301

Query: 122 EARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEME------------------- 162
            AR++F++M  +++ISWN MIA Y +     E I LF  M+                   
Sbjct: 302 AAREIFDTMRERDLISWNTMIAAYAQSGDGEEGIHLFRIMDLYGEAPDSITLIAVLDACT 361

Query: 163 -----ER------------------NVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVS 199
                ER                  +++  T++++ Y   G VE     F+ + R++V +
Sbjct: 362 AARSLERGKTIHAAIRAGTRLDLTTHLLVLTALVNMYGNLGCVELAMEAFQGIQRRDVTA 421

Query: 200 WTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFD 259
           WTA+I   A NG    +L LF E  G+   G   +  +  S++      G L   ++ F 
Sbjct: 422 WTAVIVAHARNGHGGAALELFREF-GL--EGMQPDAVAFLSILTACSHAGLLYSGRDFFV 478

Query: 260 TVPVRDEISWT-----SMIDGYLSVGQVSNAYYLFHNMPDR-DAVAWTAMI 304
            +     +  T      +ID    +GQ+  A  +   MP + D V+W  ++
Sbjct: 479 ALHGDYNVGVTLEHYRCVIDMLGRLGQLELAEEVIRGMPFKADFVSWVTLL 529



 Score = 65.1 bits (157), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 77/325 (23%), Positives = 122/325 (37%), Gaps = 83/325 (25%)

Query: 265 DEISWTSMIDGYLSVGQVSNAYYLFH-------------------------------NMP 293
           D++SW +MI  Y   G    A  +F                                 +P
Sbjct: 1   DDVSWGAMIKAYTQAGHFVEAVRMFEIVPERSTVAMTSMVVAYAENDALEISKVMFDRIP 60

Query: 294 DRDAVAWTAMISGLVQNELFVEATYLFMEM---------------RAHG----------V 328
           +RD V+WTA++S    N   VE   +F  M                 HG           
Sbjct: 61  ERDPVSWTALLSVNATNGHLVEVINIFDRMPKRSWRCWQTMLSAYSDHGDLENTKLTFAT 120

Query: 329 PPLNATFS--VLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNA 386
            P   + S   L GA   T +++  ++    + + ++ S  I+       YA+ G I  +
Sbjct: 121 MPYRGSVSWNALLGAYAQTGHLESAKEFFDRMPQCDTVSWTIVSEA----YAQRGHIQES 176

Query: 387 YNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHA 446
              F N+  RDLVSWNS++  ++   L ++  +VFE +L     PN  ++  +++A +  
Sbjct: 177 RWFFDNVPDRDLVSWNSIMSAYARRALIDDARRVFEGILR----PNVFSWNTMIAAYTQN 232

Query: 447 GLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRA----GKIKEAEEFVLRLPFEPDHR 502
           G       +F  M         P   V   N L  A    G + EA+E   R+P + D  
Sbjct: 233 GHFDEARRVFGEM---------PRKNVVSWNTLLAAYSERGMLCEAKEMFDRMP-QKDVI 282

Query: 503 IWGALLGACGFCEGNAEIAEHAAKR 527
            W +L+ A      N  I   AA R
Sbjct: 283 SWNSLVTAYA---QNGHILRVAAAR 304


>gi|224099379|ref|XP_002311462.1| predicted protein [Populus trichocarpa]
 gi|222851282|gb|EEE88829.1| predicted protein [Populus trichocarpa]
          Length = 538

 Score =  303 bits (776), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 171/508 (33%), Positives = 273/508 (53%), Gaps = 17/508 (3%)

Query: 92  ARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMM 151
           A K+F+++PE N   WN+M  G  +N    +   +F  M   +V+         ++ C+ 
Sbjct: 4   AHKVFDQIPEPNASIWNAMFRGYSQNESHKDVIVLFRQMKGLDVMPNCFTFPVILKSCVK 63

Query: 152 GEAIVLFEEME--------ERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAM 203
             A+   EE+           N    T++I  Y   G +   Y +F  M  +NV++WTAM
Sbjct: 64  INALKEGEEVHCFVIKSGFRANPFVATTLIDMYASGGAIHAAYRVFGEMIERNVIAWTAM 123

Query: 204 IGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPV 263
           I G+        +    +  + + D     ++   N+MI+GYI    +  A+ LFD +P 
Sbjct: 124 INGYI-------TCCDLVTARRLFDLAPERDIVLWNTMISGYIEAKDVIRARELFDKMPN 176

Query: 264 RDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEM 323
           +D +SW ++++GY S G V     LF  MP+R+  +W A+I G  +N  F E    F  M
Sbjct: 177 KDVMSWNTVLNGYASNGDVMACERLFEEMPERNVFSWNALIGGYTRNGCFSEVLSAFKRM 236

Query: 324 RAHG-VPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGV 382
              G V P +AT   +  A      +DLG+ +H        + ++ + N L+ MYAKCGV
Sbjct: 237 LVDGTVVPNDATLVNVLSACARLGALDLGKWVHVYAESHGYKGNVYVRNALMDMYAKCGV 296

Query: 383 IDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSA 442
           ++ A ++F +M ++DL+SWN+++ G + HG   + L +F  M  +G +P+ +TF+GIL A
Sbjct: 297 VETALDVFKSMDNKDLISWNTIIGGLAVHGHGADALNLFSHMKIAGENPDGITFIGILCA 356

Query: 443 CSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHR 502
           C+H GLV  G+  F +M D Y I P  EHY  +++LLGRAG +  A +F+ ++P E D  
Sbjct: 357 CTHMGLVEDGFSYFKSMTDDYSIVPRIEHYGCIVDLLGRAGLLAHAVDFIRKMPIEADAV 416

Query: 503 IWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDM 562
           IW ALLGAC   + N E+AE A ++L+E +P N   +V+L NIY   GR  +  +L++ M
Sbjct: 417 IWAALLGACRVYK-NVELAELALEKLIEFEPKNPANYVMLSNIYGDFGRWKDVARLKVAM 475

Query: 563 GLKGVRKVPGCSWLMRNGGIQMFLSGDK 590
              G +K+PGCS +  N  +  F S D+
Sbjct: 476 RDTGFKKLPGCSLIEVNDYLVEFYSLDE 503



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 97/335 (28%), Positives = 159/335 (47%), Gaps = 47/335 (14%)

Query: 15  TSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVV 74
           T+ I  Y+  G I  A  +F  M +RNV+++ AM++G++    L  ARRLF+  PER++V
Sbjct: 90  TTLIDMYASGGAIHAAYRVFGEMIERNVIAWTAMINGYITCCDLVTARRLFDLAPERDIV 149

Query: 75  SWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKN 134
            W  MI G  +A  V  AR+LF++MP ++V+SWN+++ G   NG++    ++F  MP +N
Sbjct: 150 LWNTMISGYIEAKDVIRARELFDKMPNKDVMSWNTVLNGYASNGDVMACERLFEEMPERN 209

Query: 135 VISWNAMIAGYVECCMMGEAIVLFEEM--------------------------------- 161
           V SWNA+I GY       E +  F+ M                                 
Sbjct: 210 VFSWNALIGGYTRNGCFSEVLSAFKRMLVDGTVVPNDATLVNVLSACARLGALDLGKWVH 269

Query: 162 -------EERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHK 214
                   + NV    +++  Y + G VE    +F+ M  K+++SW  +IGG A +G   
Sbjct: 270 VYAESHGYKGNVYVRNALMDMYAKCGVVETALDVFKSMDNKDLISWNTIIGGLAVHGHGA 329

Query: 215 ESLLLFIEMKGICDNGNNCN----VQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWT 270
           ++L LF  MK   +N +       + +C  M      F   +   + +  VP R E  + 
Sbjct: 330 DALNLFSHMKIAGENPDGITFIGILCACTHMGLVEDGFSYFKSMTDDYSIVP-RIE-HYG 387

Query: 271 SMIDGYLSVGQVSNAYYLFHNMP-DRDAVAWTAMI 304
            ++D     G +++A      MP + DAV W A++
Sbjct: 388 CIVDLLGRAGLLAHAVDFIRKMPIEADAVIWAALL 422



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 79/305 (25%), Positives = 133/305 (43%), Gaps = 74/305 (24%)

Query: 182 VEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCN-----VQ 236
           +E  + +F ++P  N   W AM  G++ N  HK+ ++LF +MKG+ D   NC      ++
Sbjct: 1   MENAHKVFDQIPEPNASIWNAMFRGYSQNESHKDVIVLFRQMKGL-DVMPNCFTFPVILK 59

Query: 237 SC----------------------------NSMINGYIRFGRLEEAQNLFDTVPVRDEIS 268
           SC                             ++I+ Y   G +  A  +F  +  R+ I+
Sbjct: 60  SCVKINALKEGEEVHCFVIKSGFRANPFVATTLIDMYASGGAIHAAYRVFGEMIERNVIA 119

Query: 269 WTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGV 328
           WT+MI+GY++   +  A  LF   P+RD V W  MISG ++ +  + A  LF +M     
Sbjct: 120 WTAMINGYITCCDLVTARRLFDLAPERDIVLWNTMISGYIEAKDVIRARELFDKM----- 174

Query: 329 PPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYN 388
                                                D++  N +++ YA  G +     
Sbjct: 175 ----------------------------------PNKDVMSWNTVLNGYASNGDVMACER 200

Query: 389 IFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGT-HPNSVTFLGILSACSHAG 447
           +F  M  R++ SWN+++ G++ +G  +E L  F+ ML  GT  PN  T + +LSAC+  G
Sbjct: 201 LFEEMPERNVFSWNALIGGYTRNGCFSEVLSAFKRMLVDGTVVPNDATLVNVLSACARLG 260

Query: 448 LVSRG 452
            +  G
Sbjct: 261 ALDLG 265



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 70/272 (25%), Positives = 122/272 (44%), Gaps = 16/272 (5%)

Query: 282 VSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGA 341
           + NA+ +F  +P+ +A  W AM  G  QNE   +   LF +M+   V P   TF V+  +
Sbjct: 1   MENAHKVFDQIPEPNASIWNAMFRGYSQNESHKDVIVLFRQMKGLDVMPNCFTFPVILKS 60

Query: 342 AGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSW 401
                 +  G ++HC ++K+   ++  +   LI MYA  G I  AY +F  M+ R++++W
Sbjct: 61  CVKINALKEGEEVHCFVIKSGFRANPFVATTLIDMYASGGAIHAAYRVFGEMIERNVIAW 120

Query: 402 NSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFD 461
            +M+ G+    +    L     + +     + V +  ++S    A  V R  ELF+ M  
Sbjct: 121 TAMINGY----ITCCDLVTARRLFDLAPERDIVLWNTMISGYIEAKDVIRARELFDKM-- 174

Query: 462 VYKIQPGPE--HYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAE 519
                P  +   + +++N     G +   E     +P E +   W AL+G        +E
Sbjct: 175 -----PNKDVMSWNTVLNGYASNGDVMACERLFEEMP-ERNVFSWNALIGGYTRNGCFSE 228

Query: 520 IAEHAAKRLLELDPLNAPAHVVLCNIYAASGR 551
           +   A KR+L +D    P    L N+ +A  R
Sbjct: 229 VLS-AFKRML-VDGTVVPNDATLVNVLSACAR 258


>gi|449460189|ref|XP_004147828.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g14470-like [Cucumis sativus]
          Length = 759

 Score =  303 bits (776), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 183/561 (32%), Positives = 292/561 (52%), Gaps = 50/561 (8%)

Query: 46  NAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVV 105
           NA+L  + +NG++  AR LFE+M ER +  W +MI G   +G   EA  LF  MP RN++
Sbjct: 134 NAILDMYAKNGQVDLARNLFEQMAERTLADWNSMISGCWKSGNETEAVVLFNMMPARNII 193

Query: 106 SWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERN 165
           +W SMV G  + G+L  AR+ F+ MP ++V+SWNAM + Y +     EA+ LF +M E  
Sbjct: 194 TWTSMVTGYAKMGDLESARRYFDEMPERSVVSWNAMQSAYAQKECPKEALNLFHQMLEEG 253

Query: 166 V----VTWTSMISGYCRAGEVEEGYCLFRRMPRKNVV----SWTAMIGGFAWNGFHKESL 217
           +     TW   IS     G+      + R + +K++V      TA++   A  G  + + 
Sbjct: 254 ITPDDTTWVVTISSCSSIGDPTLADSILRMIDQKHIVLNSFVKTALLDMHAKFGNLEIAR 313

Query: 218 LLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYL 277
            +F E+      G+  N  + N MI+ Y R G+L  A+ LFD +P RD +SW SMI GY 
Sbjct: 314 NIFDEL------GSQRNAVTWNIMISAYTRVGKLSLARELFDNMPKRDVVSWNSMIAGYA 367

Query: 278 SVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSV 337
             G+ + +  LF  M                              +    + P   T + 
Sbjct: 368 QNGESAMSIELFKEM------------------------------ISCMDIQPDEVTIAS 397

Query: 338 LFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRD 397
           +  A G    + L   +  ++ +   +  +   N LI MY+KCG + +A+ IF  M +RD
Sbjct: 398 VLSACGHIGALKLSYWVLDIVREKNIKLGISGFNSLIFMYSKCGSVADAHRIFQTMGTRD 457

Query: 398 LVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFN 457
           +VS+N+++ GF+ +G   E +K+  +M E G  P+ VT++G+L+ACSHAGL++ G  +F 
Sbjct: 458 VVSFNTLISGFAANGHGKEAIKLVLTMEEEGIEPDHVTYIGVLTACSHAGLLNEGKNVFK 517

Query: 458 AMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGN 517
           ++       P  +HY  M++LLGRAG++ EA+  +  +P +P   ++G+LL A       
Sbjct: 518 SI-----QAPTVDHYACMVDLLGRAGELDEAKMLIQSMPMKPHAGVYGSLLNASRI-HKR 571

Query: 518 AEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLM 577
             + E AA +L EL+P N   +V+L NIYA+ GR  +  ++R  M   G++K  G SW+ 
Sbjct: 572 VGLGELAASKLFELEPQNLGNYVLLSNIYASFGRWEDVKRVREMMKKGGLKKSVGMSWVE 631

Query: 578 RNGGIQMFLSGDKIPAQVAEI 598
             G +  F  GD+   Q  +I
Sbjct: 632 YKGQVHKFTVGDRSHEQSKDI 652



 Score =  172 bits (436), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 123/421 (29%), Positives = 202/421 (47%), Gaps = 58/421 (13%)

Query: 21  YSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMI 80
           Y+K G +D A+ LF+ M +R +  +N+M+SG  ++G  +EA  LF  MP RN+++WT+M+
Sbjct: 140 YAKNGQVDLARNLFEQMAERTLADWNSMISGCWKSGNETEAVVLFNMMPARNIITWTSMV 199

Query: 81  CGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNV----I 136
            G A  G +  AR+ F+EMPER+VVSWN+M     +     EA  +F+ M  + +     
Sbjct: 200 TGYAKMGDLESARRYFDEMPERSVVSWNAMQSAYAQKECPKEALNLFHQMLEEGITPDDT 259

Query: 137 SWNAMIAGYVECCMMGEAIV--------------------------------------LF 158
           +W   I+    C  +G+  +                                      +F
Sbjct: 260 TWVVTISS---CSSIGDPTLADSILRMIDQKHIVLNSFVKTALLDMHAKFGNLEIARNIF 316

Query: 159 EEM-EERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESL 217
           +E+  +RN VTW  MIS Y R G++     LF  MP+++VVSW +MI G+A NG    S+
Sbjct: 317 DELGSQRNAVTWNIMISAYTRVGKLSLARELFDNMPKRDVVSWNSMIAGYAQNGESAMSI 376

Query: 218 LLFIEMKGICD-NGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVP---VRDEIS-WTSM 272
            LF EM    D   +   + S  S   G+I  G L+ +  + D V    ++  IS + S+
Sbjct: 377 ELFKEMISCMDIQPDEVTIASVLSAC-GHI--GALKLSYWVLDIVREKNIKLGISGFNSL 433

Query: 273 IDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLN 332
           I  Y   G V++A+ +F  M  RD V++  +ISG   N    EA  L + M   G+ P +
Sbjct: 434 IFMYSKCGSVADAHRIFQTMGTRDVVSFNTLISGFAANGHGKEAIKLVLTMEEEGIEPDH 493

Query: 333 ATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSN 392
            T+  +  A      ++ G+ +     K+     +    C++ +  + G +D A  +  +
Sbjct: 494 VTYIGVLTACSHAGLLNEGKNV----FKSIQAPTVDHYACMVDLLGRAGELDEAKMLIQS 549

Query: 393 M 393
           M
Sbjct: 550 M 550



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 99/367 (26%), Positives = 165/367 (44%), Gaps = 83/367 (22%)

Query: 7   PKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFE 66
           P   ++  TS +T Y+K G ++ A+  F  MP+R+VVS+NAM S + Q     EA  LF 
Sbjct: 188 PARNIITWTSMVTGYAKMGDLESARRYFDEMPERSVVSWNAMQSAYAQKECPKEALNLFH 247

Query: 67  EMPERNV----VSWTAMICG--------LADA---------------------------G 87
           +M E  +     +W   I          LAD+                           G
Sbjct: 248 QMLEEGITPDDTTWVVTISSCSSIGDPTLADSILRMIDQKHIVLNSFVKTALLDMHAKFG 307

Query: 88  RVCEARKLFEEM-PERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYV 146
            +  AR +F+E+  +RN V+WN M+    R G+L+ AR++F++MP ++V+SWN+MIAGY 
Sbjct: 308 NLEIARNIFDELGSQRNAVTWNIMISAYTRVGKLSLARELFDNMPKRDVVSWNSMIAGYA 367

Query: 147 ECCMMGEAIVLFEEM------------------------------------EERNVVT-- 168
           +      +I LF+EM                                     E+N+    
Sbjct: 368 QNGESAMSIELFKEMISCMDIQPDEVTIASVLSACGHIGALKLSYWVLDIVREKNIKLGI 427

Query: 169 --WTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGI 226
             + S+I  Y + G V + + +F+ M  ++VVS+  +I GFA NG  KE++ L + M+  
Sbjct: 428 SGFNSLIFMYSKCGSVADAHRIFQTMGTRDVVSFNTLISGFAANGHGKEAIKLVLTME-- 485

Query: 227 CDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAY 286
            + G   +  +   ++      G L E +N+F ++       +  M+D     G++  A 
Sbjct: 486 -EEGIEPDHVTYIGVLTACSHAGLLNEGKNVFKSIQAPTVDHYACMVDLLGRAGELDEAK 544

Query: 287 YLFHNMP 293
            L  +MP
Sbjct: 545 MLIQSMP 551



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 69/287 (24%), Positives = 111/287 (38%), Gaps = 57/287 (19%)

Query: 169 WTSMISGYCRAGEVEEGYC--LFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGI 226
           W S++   C        Y   +F   P  +   ++ M+  ++  G H + + LF      
Sbjct: 35  WVSLLLINCTRLHAHPAYVDSIFTSSPSPDASVYSCMLKYYSRMGAHNQVVSLFK----- 89

Query: 227 CDNGNNCNVQSCNSMINGYIRFGRLE-EAQNLFDTVPVR-----DEISWTSMIDGYLSVG 280
           C +  N   Q        YI   +L  ++ NLF    ++     D     +++D Y   G
Sbjct: 90  CTHSLNLRPQPF-----VYIYLIKLAGKSGNLFHAYVLKLGHIDDHFIRNAILDMYAKNG 144

Query: 281 QVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFG 340
           QV  A  LF  M +R    W +MISG  ++    EA  LF  M A               
Sbjct: 145 QVDLARNLFEQMAERTLADWNSMISGCWKSGNETEAVVLFNMMPAR-------------- 190

Query: 341 AAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVS 400
                                    ++I    +++ YAK G +++A   F  M  R +VS
Sbjct: 191 -------------------------NIITWTSMVTGYAKMGDLESARRYFDEMPERSVVS 225

Query: 401 WNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAG 447
           WN+M   ++      E L +F  MLE G  P+  T++  +S+CS  G
Sbjct: 226 WNAMQSAYAQKECPKEALNLFHQMLEEGITPDDTTWVVTISSCSSIG 272



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 55/231 (23%), Positives = 90/231 (38%), Gaps = 25/231 (10%)

Query: 288 LFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATAN 347
           +F + P  DA  ++ M+    +     +   LF    +  + P    +  L   AG + N
Sbjct: 56  IFTSSPSPDASVYSCMLKYYSRMGAHNQVVSLFKCTHSLNLRPQPFVYIYLIKLAGKSGN 115

Query: 348 IDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMG 407
           +      H  ++K     D  + N ++ MYAK G +D A N+F  M  R L  WNSM+ G
Sbjct: 116 L-----FHAYVLKLGHIDDHFIRNAILDMYAKNGQVDLARNLFEQMAERTLADWNSMISG 170

Query: 408 FSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQP 467
               G   E + +F  M       N +T+  +++  +  G +      F+ M        
Sbjct: 171 CWKSGNETEAVVLFNMM----PARNIITWTSMVTGYAKMGDLESARRYFDEM-------- 218

Query: 468 GPEHYVSMINLLGRAGKIKEAEEFVLRLPFE-------PDHRIWGALLGAC 511
            PE  V   N +  A   KE  +  L L  +       PD   W   + +C
Sbjct: 219 -PERSVVSWNAMQSAYAQKECPKEALNLFHQMLEEGITPDDTTWVVTISSC 268


>gi|357475531|ref|XP_003608051.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355509106|gb|AES90248.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 763

 Score =  303 bits (776), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 198/663 (29%), Positives = 328/663 (49%), Gaps = 94/663 (14%)

Query: 11  VVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPE 70
           V+    SI  ++K G + EA+ +F  MP R V S+N M+SG+ Q G+ +EA  L   M  
Sbjct: 37  VISTNISIAHHAKTGKLVEARHMFDEMPLRTVSSWNTMISGYSQWGKYTEALTLVSFMHS 96

Query: 71  R----NVVSWTAMICGLADAGR-----------------------------------VCE 91
                N VS++A +      G                                    + E
Sbjct: 97  SCVKFNEVSFSACLSACTRGGSLFLGKQIHSLLFKSGYQRFGPVGSALLHYYVQCCGIRE 156

Query: 92  ARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVE---- 147
           A  +FEE+ + N V W+ M+ G ++   + +A ++F  MP+++V++W  +I+GY +    
Sbjct: 157 AEMVFEELRDENHVLWSLMLAGYVQRDMIGDAMEIFEKMPVRDVVAWTTLISGYAKREDG 216

Query: 148 C--------CMMGEAIVLFEEMEERNVV-----------------------------TWT 170
           C        CM   + VL  E     V+                               +
Sbjct: 217 CERALDLFGCMRRSSEVLPNEFTLDCVLRVCARLRILYVGKVVHGLCIKDGFDFDNSVSS 276

Query: 171 SMISGYCRAGEVEEGYCLFRRMPRK---NVVSWTAMIGGFAWNGFHKESLLLFIEMKGIC 227
           ++   YC +  V++   ++  M  +   NV    ++IGG    G  KE+ ++F  ++   
Sbjct: 277 ALAEFYCVSDAVDDAKRVYESMVGEACSNVAD--SLIGGLVSMGRVKEAGMIFYGLR--- 331

Query: 228 DNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYY 287
               +  + S N MI GY   G+ ++++ LF+ + ++   S  +MI  Y   G++  A  
Sbjct: 332 ----DKTLISNNLMIKGYAMSGQFKKSKKLFEKMSLKHLTSLNTMITVYSKNGELDEAVK 387

Query: 288 LFHNMP-DRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATA 346
           LF     +R+ V W +M+SG + N    EA  L++ MR   V    +TFSVLF A     
Sbjct: 388 LFDKTKGERNCVTWNSMMSGYIHNGEHSEALKLYVTMRRFLVEYSRSTFSVLFRACAYLC 447

Query: 347 NIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVM 406
           +   G+ +H  L KT  + ++ +   L+  Y+KCG + +A   F+++ S ++ +W +++ 
Sbjct: 448 SFQQGQLLHAHLAKTPYQENVYVGTALVDFYSKCGHLADAQRSFTSIFSPNVAAWTALIN 507

Query: 407 GFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQ 466
           G+++HG  +E +  F SML+ G  PN+ TF+ +LSACSHAGLV  G + F++M   Y+I 
Sbjct: 508 GYAYHGCGSEAISRFRSMLDQGVVPNAATFVAVLSACSHAGLVDEGLKFFHSMQINYRIT 567

Query: 467 PGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAK 526
           P  EHY  +++LLGR+G++KEAEEF++++P + D  IWGALL A  F   N E+ E AA 
Sbjct: 568 PTIEHYTCVVDLLGRSGRVKEAEEFIIQMPIKADGVIWGALLNASCFW-NNVELGERAAV 626

Query: 527 RLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFL 586
           +L  LDP +  A V L N+YA  GR  ++ K+R  +    +RK  G SW+  N  + +F 
Sbjct: 627 KLFSLDPNSVSALVTLSNMYARRGRWGKKTKIRKRLQSLELRKDQGFSWIELNNNVHLFS 686

Query: 587 SGD 589
             D
Sbjct: 687 VED 689



 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 122/518 (23%), Positives = 233/518 (44%), Gaps = 87/518 (16%)

Query: 41  NVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMP 100
           +V+S N  ++   + G+L EAR +F+EMP R V SW  MI G +  G+  EA  L   M 
Sbjct: 36  HVISTNISIAHHAKTGKLVEARHMFDEMPLRTVSSWNTMISGYSQWGKYTEALTLVSFMH 95

Query: 101 ER----NVVSWNSMVVGLIRNGELNEARKV----FNSMPIKNVISWNAMIAGYVECCMMG 152
                 N VS+++ +    R G L   +++    F S   +     +A++  YV+CC + 
Sbjct: 96  SSCVKFNEVSFSACLSACTRGGSLFLGKQIHSLLFKSGYQRFGPVGSALLHYYVQCCGIR 155

Query: 153 EAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAW--- 209
           EA ++FEE+ + N V W+ M++GY +   + +   +F +MP ++VV+WT +I G+A    
Sbjct: 156 EAEMVFEELRDENHVLWSLMLAGYVQRDMIGDAMEIFEKMPVRDVVAWTTLISGYAKRED 215

Query: 210 --------------------NGFHKESLL--------LFIE--MKGIC-DNGNNCNVQSC 238
                               N F  + +L        L++   + G+C  +G + +    
Sbjct: 216 GCERALDLFGCMRRSSEVLPNEFTLDCVLRVCARLRILYVGKVVHGLCIKDGFDFDNSVS 275

Query: 239 NSMINGYIRFGRLEEAQNLFDTVPVRDEIS--WTSMIDGYLSVGQVSNAYYLFHNMPDRD 296
           +++   Y     +++A+ +++++ V +  S    S+I G +S+G+V  A  +F+ + D+ 
Sbjct: 276 SALAEFYCVSDAVDDAKRVYESM-VGEACSNVADSLIGGLVSMGRVKEAGMIFYGLRDKT 334

Query: 297 AVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHC 356
            ++   MI G   +  F ++  LF +M    +  LN                        
Sbjct: 335 LISNNLMIKGYAMSGQFKKSKKLFEKMSLKHLTSLNT----------------------- 371

Query: 357 VLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMV-SRDLVSWNSMVMGFSHHGLAN 415
                           +I++Y+K G +D A  +F      R+ V+WNSM+ G+ H+G  +
Sbjct: 372 ----------------MITVYSKNGELDEAVKLFDKTKGERNCVTWNSMMSGYIHNGEHS 415

Query: 416 ETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSM 475
           E LK++ +M       +  TF  +  AC++     +G +L +A       Q       ++
Sbjct: 416 EALKLYVTMRRFLVEYSRSTFSVLFRACAYLCSFQQG-QLLHAHLAKTPYQENVYVGTAL 474

Query: 476 INLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGF 513
           ++   + G + +A+     + F P+   W AL+    +
Sbjct: 475 VDFYSKCGHLADAQRSFTSI-FSPNVAAWTALINGYAY 511



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 75/246 (30%), Positives = 120/246 (48%), Gaps = 27/246 (10%)

Query: 2   SERNHPKSLVVHLTS---SITKYSKRGFIDEAKALF-QLMPQRNVVSYNAMLSGFLQNGR 57
           S++   K  + HLTS    IT YSK G +DEA  LF +   +RN V++N+M+SG++ NG 
Sbjct: 354 SKKLFEKMSLKHLTSLNTMITVYSKNGELDEAVKLFDKTKGERNCVTWNSMMSGYIHNGE 413

Query: 58  LSEARRLFEEMPERNVVSWT-----------AMICGLADAGRVCEARKLFEEMPERNVVS 106
            SEA +L+  M  R +V ++           A +C     G++  A  L +   + NV  
Sbjct: 414 HSEALKLYVTM-RRFLVEYSRSTFSVLFRACAYLCSF-QQGQLLHAH-LAKTPYQENVYV 470

Query: 107 WNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNV 166
             ++V    + G L +A++ F S+   NV +W A+I GY       EAI  F  M ++ V
Sbjct: 471 GTALVDFYSKCGHLADAQRSFTSIFSPNVAAWTALINGYAYHGCGSEAISRFRSMLDQGV 530

Query: 167 V----TWTSMISGYCRAGEVEEGYCLFRRMP-----RKNVVSWTAMIGGFAWNGFHKESL 217
           V    T+ +++S    AG V+EG   F  M         +  +T ++     +G  KE+ 
Sbjct: 531 VPNAATFVAVLSACSHAGLVDEGLKFFHSMQINYRITPTIEHYTCVVDLLGRSGRVKEAE 590

Query: 218 LLFIEM 223
              I+M
Sbjct: 591 EFIIQM 596


>gi|297794367|ref|XP_002865068.1| hypothetical protein ARALYDRAFT_920083 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297310903|gb|EFH41327.1| hypothetical protein ARALYDRAFT_920083 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 659

 Score =  303 bits (776), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 185/592 (31%), Positives = 293/592 (49%), Gaps = 86/592 (14%)

Query: 92  ARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSM-------PIKNVISWNAMIAG 144
           AR LF++MP R++VSW +++ G +      EA  +F+++       P  +V+S      G
Sbjct: 39  ARHLFDQMPHRDIVSWTAIINGYVTAANSFEALNLFSALLFDPAVSPDTSVLSVALKACG 98

Query: 145 YVECCMMGEAI--VLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTA 202
                  GE++    F+     +V   T++++ Y R G++++G  +F  M  +N V+WTA
Sbjct: 99  QSSNIGYGESLHAYAFKTSLLTSVFVGTNLLNMYMRTGKIDKGCRIFTEMQFRNTVTWTA 158

Query: 203 MIGGFAWNGFHKESLLLFIEM---KGICDN-----------------------------G 230
           ++ G    G HKE L  F EM   KG+ D+                             G
Sbjct: 159 IVSGMVEAGRHKEGLTYFSEMSRSKGLSDDFAFATALKACARLRQVKYGKEIHTHVIVRG 218

Query: 231 NNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQ--------- 281
           ++ ++   NS+IN Y   G + +  +LF+++  RD  SWT++ID Y  +GQ         
Sbjct: 219 SDASLCVVNSLINMYTECGEMHDGVHLFESMSERDVFSWTTLIDAYSQMGQEEKAVATFL 278

Query: 282 ---------------------VSN--------------AYYLFHNMPDRDAVAWTAMISG 306
                                VSN              A  LF  M  RD + W+ +I G
Sbjct: 279 KIEIFRRTSQWTYFCLGDSLSVSNSMMKMYSTCGKLDSASVLFQGMRRRDIITWSTIIGG 338

Query: 307 LVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESD 366
             Q  L  E    F  MR  G  P +   + L   +G  A ++ GRQ+H + +    E +
Sbjct: 339 YSQAGLGEEVFMCFSWMRQAGPKPTDPALASLLSVSGTMAVLEQGRQVHALALYLGLEQN 398

Query: 367 LILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLE 426
             + + LI+MY+KCG I+ A  IF    + D+VS  +M+ G++ HG   E + +FE  L+
Sbjct: 399 STIRSALINMYSKCGSIEEASKIFEETDTDDIVSLTAMINGYAEHGNTKEAIDLFEKSLK 458

Query: 427 SGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIK 486
            G  P++VTF+ +L+ACSH+G +  G+  FN M D Y I+P  EHY  M++LL RAG++ 
Sbjct: 459 VGLRPDTVTFISVLTACSHSGQLDLGFRYFNLMQDEYNIRPVKEHYGCMVDLLCRAGRLS 518

Query: 487 EAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIY 546
           +AE+ +  +P++ D  +W  LL AC   +G+ E    AA+R+LELDP +  A V L NIY
Sbjct: 519 DAEKMINEMPWKKDDVVWTTLLNACK-AKGDTERGRRAAERILELDPTSETAFVTLANIY 577

Query: 547 AASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
           +++G+  E   +R  M  KGV KVPG S +        F+SG +  +Q  +I
Sbjct: 578 SSTGKLEEAAHVRKAMKSKGVIKVPGWSSIKIMDRASTFVSGSQSHSQSEDI 629


>gi|449476974|ref|XP_004154891.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g14470-like [Cucumis sativus]
          Length = 759

 Score =  303 bits (776), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 183/561 (32%), Positives = 292/561 (52%), Gaps = 50/561 (8%)

Query: 46  NAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVV 105
           NA+L  + +NG++  AR LFE+M ER +  W +MI G   +G   EA  LF  MP RN++
Sbjct: 134 NAILDMYAKNGQVDLARNLFEQMAERTLADWNSMISGCWKSGNETEAVVLFNMMPARNII 193

Query: 106 SWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERN 165
           +W SMV G  + G+L  AR+ F+ MP ++V+SWNAM + Y +     EA+ LF +M E  
Sbjct: 194 TWTSMVTGYAKMGDLESARRYFDEMPERSVVSWNAMQSAYAQKECPKEALNLFHQMLEEG 253

Query: 166 V----VTWTSMISGYCRAGEVEEGYCLFRRMPRKNVV----SWTAMIGGFAWNGFHKESL 217
           +     TW   IS     G+      + R + +K++V      TA++   A  G  + + 
Sbjct: 254 ITPDDTTWVVTISSCSSIGDPTLADSILRMIDQKHIVLNSFVKTALLDMHAKFGNLEIAR 313

Query: 218 LLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYL 277
            +F E+      G+  N  + N MI+ Y R G+L  A+ LFD +P RD +SW SMI GY 
Sbjct: 314 NIFDEL------GSQRNAVTWNIMISAYTRVGKLSLARELFDNMPKRDVVSWNSMIAGYA 367

Query: 278 SVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSV 337
             G+ + +  LF  M                              +    + P   T + 
Sbjct: 368 QNGESAMSIELFKEM------------------------------ISCMDIQPDEVTIAS 397

Query: 338 LFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRD 397
           +  A G    + L   +  ++ +   +  +   N LI MY+KCG + +A+ IF  M +RD
Sbjct: 398 VLSACGHIGALKLSYWVLDIVREKNIKLGISGFNSLIFMYSKCGSVADAHRIFQTMGTRD 457

Query: 398 LVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFN 457
           +VS+N+++ GF+ +G   E +K+  +M E G  P+ VT++G+L+ACSHAGL++ G  +F 
Sbjct: 458 VVSFNTLISGFAANGHGKEAIKLVLTMEEEGIEPDHVTYIGVLTACSHAGLLNEGKNVFK 517

Query: 458 AMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGN 517
           ++       P  +HY  M++LLGRAG++ EA+  +  +P +P   ++G+LL A       
Sbjct: 518 SI-----QAPTVDHYACMVDLLGRAGELDEAKMLIQSMPMKPHAGVYGSLLNASRI-HKR 571

Query: 518 AEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLM 577
             + E AA +L EL+P N   +V+L NIYA+ GR  +  ++R  M   G++K  G SW+ 
Sbjct: 572 VGLGELAASKLFELEPQNLGNYVLLSNIYASFGRWEDVKRVREMMKKGGLKKSVGMSWVE 631

Query: 578 RNGGIQMFLSGDKIPAQVAEI 598
             G +  F  GD+   Q  +I
Sbjct: 632 YKGQVHKFTVGDRSHEQSKDI 652



 Score =  172 bits (436), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 123/421 (29%), Positives = 202/421 (47%), Gaps = 58/421 (13%)

Query: 21  YSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMI 80
           Y+K G +D A+ LF+ M +R +  +N+M+SG  ++G  +EA  LF  MP RN+++WT+M+
Sbjct: 140 YAKNGQVDLARNLFEQMAERTLADWNSMISGCWKSGNETEAVVLFNMMPARNIITWTSMV 199

Query: 81  CGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNV----I 136
            G A  G +  AR+ F+EMPER+VVSWN+M     +     EA  +F+ M  + +     
Sbjct: 200 TGYAKMGDLESARRYFDEMPERSVVSWNAMQSAYAQKECPKEALNLFHQMLEEGITPDDT 259

Query: 137 SWNAMIAGYVECCMMGEAIV--------------------------------------LF 158
           +W   I+    C  +G+  +                                      +F
Sbjct: 260 TWVVTISS---CSSIGDPTLADSILRMIDQKHIVLNSFVKTALLDMHAKFGNLEIARNIF 316

Query: 159 EEM-EERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESL 217
           +E+  +RN VTW  MIS Y R G++     LF  MP+++VVSW +MI G+A NG    S+
Sbjct: 317 DELGSQRNAVTWNIMISAYTRVGKLSLARELFDNMPKRDVVSWNSMIAGYAQNGESAMSI 376

Query: 218 LLFIEMKGICD-NGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVP---VRDEIS-WTSM 272
            LF EM    D   +   + S  S   G+I  G L+ +  + D V    ++  IS + S+
Sbjct: 377 ELFKEMISCMDIQPDEVTIASVLSAC-GHI--GALKLSYWVLDIVREKNIKLGISGFNSL 433

Query: 273 IDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLN 332
           I  Y   G V++A+ +F  M  RD V++  +ISG   N    EA  L + M   G+ P +
Sbjct: 434 IFMYSKCGSVADAHRIFQTMGTRDVVSFNTLISGFAANGHGKEAIKLVLTMEEEGIEPDH 493

Query: 333 ATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSN 392
            T+  +  A      ++ G+ +     K+     +    C++ +  + G +D A  +  +
Sbjct: 494 VTYIGVLTACSHAGLLNEGKNV----FKSIQAPTVDHYACMVDLLGRAGELDEAKMLIQS 549

Query: 393 M 393
           M
Sbjct: 550 M 550



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 99/367 (26%), Positives = 165/367 (44%), Gaps = 83/367 (22%)

Query: 7   PKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFE 66
           P   ++  TS +T Y+K G ++ A+  F  MP+R+VVS+NAM S + Q     EA  LF 
Sbjct: 188 PARNIITWTSMVTGYAKMGDLESARRYFDEMPERSVVSWNAMQSAYAQKECPKEALNLFH 247

Query: 67  EMPERNV----VSWTAMICG--------LADA---------------------------G 87
           +M E  +     +W   I          LAD+                           G
Sbjct: 248 QMLEEGITPDDTTWVVTISSCSSIGDPTLADSILRMIDQKHIVLNSFVKTALLDMHAKFG 307

Query: 88  RVCEARKLFEEM-PERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYV 146
            +  AR +F+E+  +RN V+WN M+    R G+L+ AR++F++MP ++V+SWN+MIAGY 
Sbjct: 308 NLEIARNIFDELGSQRNAVTWNIMISAYTRVGKLSLARELFDNMPKRDVVSWNSMIAGYA 367

Query: 147 ECCMMGEAIVLFEEM------------------------------------EERNVVT-- 168
           +      +I LF+EM                                     E+N+    
Sbjct: 368 QNGESAMSIELFKEMISCMDIQPDEVTIASVLSACGHIGALKLSYWVLDIVREKNIKLGI 427

Query: 169 --WTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGI 226
             + S+I  Y + G V + + +F+ M  ++VVS+  +I GFA NG  KE++ L + M+  
Sbjct: 428 SGFNSLIFMYSKCGSVADAHRIFQTMGTRDVVSFNTLISGFAANGHGKEAIKLVLTME-- 485

Query: 227 CDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAY 286
            + G   +  +   ++      G L E +N+F ++       +  M+D     G++  A 
Sbjct: 486 -EEGIEPDHVTYIGVLTACSHAGLLNEGKNVFKSIQAPTVDHYACMVDLLGRAGELDEAK 544

Query: 287 YLFHNMP 293
            L  +MP
Sbjct: 545 MLIQSMP 551



 Score = 72.4 bits (176), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 68/287 (23%), Positives = 111/287 (38%), Gaps = 57/287 (19%)

Query: 169 WTSMISGYCRAGEVEEGYC--LFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGI 226
           W S++   C        Y   +F   P  +   ++ M+  ++  G H + + LF      
Sbjct: 35  WVSLLLINCTRLHAHPAYVDSIFTSSPSPDASVYSCMLKYYSRMGAHNQVVSLFK----- 89

Query: 227 CDNGNNCNVQSCNSMINGYIRFGRLE-EAQNLFDTVPVR-----DEISWTSMIDGYLSVG 280
           C +  N   Q        YI   +L  ++ N+F    ++     D     +++D Y   G
Sbjct: 90  CTHSLNLRPQPF-----VYIYLIKLAGKSGNMFHAYVLKLGHIDDHFIRNAILDMYAKNG 144

Query: 281 QVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFG 340
           QV  A  LF  M +R    W +MISG  ++    EA  LF  M A               
Sbjct: 145 QVDLARNLFEQMAERTLADWNSMISGCWKSGNETEAVVLFNMMPAR-------------- 190

Query: 341 AAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVS 400
                                    ++I    +++ YAK G +++A   F  M  R +VS
Sbjct: 191 -------------------------NIITWTSMVTGYAKMGDLESARRYFDEMPERSVVS 225

Query: 401 WNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAG 447
           WN+M   ++      E L +F  MLE G  P+  T++  +S+CS  G
Sbjct: 226 WNAMQSAYAQKECPKEALNLFHQMLEEGITPDDTTWVVTISSCSSIG 272



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 55/231 (23%), Positives = 90/231 (38%), Gaps = 25/231 (10%)

Query: 288 LFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATAN 347
           +F + P  DA  ++ M+    +     +   LF    +  + P    +  L   AG + N
Sbjct: 56  IFTSSPSPDASVYSCMLKYYSRMGAHNQVVSLFKCTHSLNLRPQPFVYIYLIKLAGKSGN 115

Query: 348 IDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMG 407
           +      H  ++K     D  + N ++ MYAK G +D A N+F  M  R L  WNSM+ G
Sbjct: 116 M-----FHAYVLKLGHIDDHFIRNAILDMYAKNGQVDLARNLFEQMAERTLADWNSMISG 170

Query: 408 FSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQP 467
               G   E + +F  M       N +T+  +++  +  G +      F+ M        
Sbjct: 171 CWKSGNETEAVVLFNMM----PARNIITWTSMVTGYAKMGDLESARRYFDEM-------- 218

Query: 468 GPEHYVSMINLLGRAGKIKEAEEFVLRLPFE-------PDHRIWGALLGAC 511
            PE  V   N +  A   KE  +  L L  +       PD   W   + +C
Sbjct: 219 -PERSVVSWNAMQSAYAQKECPKEALNLFHQMLEEGITPDDTTWVVTISSC 268


>gi|115457318|ref|NP_001052259.1| Os04g0218100 [Oryza sativa Japonica Group]
 gi|113563830|dbj|BAF14173.1| Os04g0218100, partial [Oryza sativa Japonica Group]
          Length = 890

 Score =  303 bits (775), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 190/593 (32%), Positives = 307/593 (51%), Gaps = 45/593 (7%)

Query: 39  QRNVVSYNAMLSGFLQNGRLSEARRLFEEMPER---NVVSWTAMICGLADAGRVCEARKL 95
           + NV   NA+++ + + G L EA  +F+E+ +R   +V+SW +++     +     A  L
Sbjct: 187 ESNVFICNALVAMYSRCGSLEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDL 246

Query: 96  FEEM-------PERNVVSWNSMVVGLIRNGELNEA--RKVFNSMPIKN-----VISWNAM 141
           F +M       P        S+V  L   G L      K  +   I+N     V   NA+
Sbjct: 247 FSKMTLIVHEKPTNERSDIISIVNILPACGSLKAVPQTKEVHGNAIRNGTFPDVFVGNAL 306

Query: 142 IAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKN----V 197
           I  Y +C +M  A+ +F  ME ++VV+W +M++GY ++G  E  + LF+ M ++N    V
Sbjct: 307 IDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYSQSGNFEAAFELFKNMRKENIPLDV 366

Query: 198 VSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEA--- 254
           V+WTA+I G++  G   E+L LF +M     +G+  N  +  S+++     G   +    
Sbjct: 367 VTWTAVIAGYSQRGCSHEALNLFRQM---IFSGSLPNCVTIISVLSACASLGAFSQGTEI 423

Query: 255 -----QNLFDTVP------VRDEISWTSMIDGYLSVGQVSNAYYLFHNMP--DRDAVAWT 301
                +N   T+         D + + ++ID Y        A  +F ++P  +R+ V WT
Sbjct: 424 HAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWT 483

Query: 302 AMISGLVQNELFVEATYLFMEM--RAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLM 359
            MI G  Q     +A  LF+EM    +GV P   T S +  A    A I +G+QIH  ++
Sbjct: 484 VMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVL 543

Query: 360 KTE--SESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANET 417
           +      S   + NCLI MY+KCG +D A ++F +M  +  +SW SM+ G+  HG  +E 
Sbjct: 544 RHHRYESSAYFVANCLIDMYSKCGDVDTARHVFDSMSQKSAISWTSMMTGYGMHGRGSEA 603

Query: 418 LKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMIN 477
           L +F+ M ++G  P+ +TFL +L ACSH G+V +G   F++M   Y + P  EHY   I+
Sbjct: 604 LDIFDKMRKAGFVPDDITFLVVLYACSHCGMVDQGLSYFDSMSADYGLTPRAEHYACAID 663

Query: 478 LLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAP 537
           LL R+G++ +A   V  +P EP   +W ALL AC     N E+AEHA  +L+E++  N  
Sbjct: 664 LLARSGRLDKAWRTVKDMPMEPTAVVWVALLSACRV-HSNVELAEHALNKLVEMNAENDG 722

Query: 538 AHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDK 590
           ++ ++ NIYA +GR  +  ++R  M   G++K PGCSW+    G   F  GD+
Sbjct: 723 SYTLISNIYATAGRWKDVARIRHLMKKSGIKKRPGCSWVQGQKGTASFFVGDR 775



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 103/433 (23%), Positives = 180/433 (41%), Gaps = 100/433 (23%)

Query: 139 NAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPR---- 194
             ++A Y+ C     A+++ E +     V W  +I  + + G ++    +  RM R    
Sbjct: 93  TGVVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRAGTR 152

Query: 195 ----------KNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMING 244
                     K      +   G A++G              IC NG   NV  CN+++  
Sbjct: 153 PDHFTLPHVLKACGELPSYRCGSAFHGL-------------ICCNGFESNVFICNALVAM 199

Query: 245 YIRFGRLEEAQNLFDTVPVR---DEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWT 301
           Y R G LEEA  +FD +  R   D ISW S++  ++                 + + AWT
Sbjct: 200 YSRCGSLEEASMIFDEITQRGIDDVISWNSIVSAHV-----------------KSSNAWT 242

Query: 302 AMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKT 361
           A+       +LF + T +  E   +    + +  ++L  A G+   +   +++H   ++ 
Sbjct: 243 AL-------DLFSKMTLIVHEKPTNERSDIISIVNIL-PACGSLKAVPQTKEVHGNAIRN 294

Query: 362 ESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMV---------------- 405
            +  D+ + N LI  YAKCG+++NA  +F+ M  +D+VSWN+MV                
Sbjct: 295 GTFPDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYSQSGNFEAAFELF 354

Query: 406 -------------------MGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHA 446
                               G+S  G ++E L +F  M+ SG+ PN VT + +LSAC+  
Sbjct: 355 KNMRKENIPLDVVTWTAVIAGYSQRGCSHEALNLFRQMIFSGSLPNCVTIISVLSACASL 414

Query: 447 GLVSRGWE-----LFNAMFDVYKIQPGPEH----YVSMINLLGRAGKIKEAEEFVLRLPF 497
           G  S+G E     L N +  +     G +     Y ++I++  +    K A      +P 
Sbjct: 415 GAFSQGTEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPL 474

Query: 498 EPDHRI-WGALLG 509
           E  + + W  ++G
Sbjct: 475 EERNVVTWTVMIG 487



 Score =  111 bits (278), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 107/416 (25%), Positives = 179/416 (43%), Gaps = 81/416 (19%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERN----V 73
           I  Y+K G ++ A  +F +M  ++VVS+NAM++G+ Q+G    A  LF+ M + N    V
Sbjct: 307 IDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYSQSGNFEAAFELFKNMRKENIPLDV 366

Query: 74  VSWTAMICGLADAGRVCEARKLFEEM----PERNVVSWNSMVVGLIRNGELNEARKVFNS 129
           V+WTA+I G +  G   EA  LF +M       N V+  S++      G  ++  ++ ++
Sbjct: 367 VTWTAVIAGYSQRGCSHEALNLFRQMIFSGSLPNCVTIISVLSACASLGAFSQGTEI-HA 425

Query: 130 MPIKN---------------VISWNAMIAGYVECCMMGEAIVLFEE--MEERNVVTWTSM 172
             +KN               ++ +NA+I  Y +C     A  +F++  +EERNVVTWT M
Sbjct: 426 YSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVM 485

Query: 173 ISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNN 232
           I G+ + G+  +   LF  M  +          G A N +    +L+          G  
Sbjct: 486 IGGHAQYGDSNDALKLFVEMISEPY--------GVAPNAYTISCILMACAHLAAIRIGKQ 537

Query: 233 CNVQ-------------SCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSV 279
            +                 N +I+ Y + G ++ A+++FD++  +  ISWTSM+ GY   
Sbjct: 538 IHAYVLRHHRYESSAYFVANCLIDMYSKCGDVDTARHVFDSMSQKSAISWTSMMTGYGMH 597

Query: 280 GQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLF 339
           G+ S                               EA  +F +MR  G  P + TF V+ 
Sbjct: 598 GRGS-------------------------------EALDIFDKMRKAGFVPDDITFLVVL 626

Query: 340 GAAGATANIDLGRQIHCVLMKTESESDLILEN--CLISMYAKCGVIDNAYNIFSNM 393
            A      +D G   +   M  +       E+  C I + A+ G +D A+    +M
Sbjct: 627 YACSHCGMVDQGLS-YFDSMSADYGLTPRAEHYACAIDLLARSGRLDKAWRTVKDM 681



 Score = 78.6 bits (192), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 81/344 (23%), Positives = 148/344 (43%), Gaps = 42/344 (12%)

Query: 1   MSERNHPKSLVVHLTSSITKYSKRGFIDEAKALFQLM----PQRNVVSYNAMLSGFLQNG 56
           M + N P   VV  T+ I  YS+RG   EA  LF+ M       N V+  ++LS     G
Sbjct: 357 MRKENIPLD-VVTWTAVIAGYSQRGCSHEALNLFRQMIFSGSLPNCVTIISVLSACASLG 415

Query: 57  RLSEARRLFEEM--------------PERNVVSWTAMICGLADAGRVCEARKLFEEMP-- 100
             S+   +                   + +++ + A+I   +       AR +F+++P  
Sbjct: 416 AFSQGTEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLE 475

Query: 101 ERNVVSWNSMVVGLIRNGELNEARKVFNSM--------PIKNVISWNAMIAGYVECCMMG 152
           ERNVV+W  M+ G  + G+ N+A K+F  M        P    IS   M   ++    +G
Sbjct: 476 ERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIG 535

Query: 153 EAIVLF----EEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFA 208
           + I  +       E         +I  Y + G+V+    +F  M +K+ +SWT+M+ G+ 
Sbjct: 536 KQIHAYVLRHHRYESSAYFVANCLIDMYSKCGDVDTARHVFDSMSQKSAISWTSMMTGYG 595

Query: 209 WNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEIS 268
            +G   E+L +F +M+     G   +  +   ++      G +++  + FD++     ++
Sbjct: 596 MHGRGSEALDIFDKMR---KAGFVPDDITFLVVLYACSHCGMVDQGLSYFDSMSADYGLT 652

Query: 269 -----WTSMIDGYLSVGQVSNAYYLFHNMP-DRDAVAWTAMISG 306
                +   ID     G++  A+    +MP +  AV W A++S 
Sbjct: 653 PRAEHYACAIDLLARSGRLDKAWRTVKDMPMEPTAVVWVALLSA 696



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 74/317 (23%), Positives = 132/317 (41%), Gaps = 21/317 (6%)

Query: 270 TSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVP 329
           T ++  YL+ G    A  +   +    AV W  +I   ++      A  +   M   G  
Sbjct: 93  TGVVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRAGTR 152

Query: 330 PLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNI 389
           P + T   +  A G   +   G   H ++     ES++ + N L++MY++CG ++ A  I
Sbjct: 153 PDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMI 212

Query: 390 FSNMVSR---DLVSWNSMVMGFSHHGLANETLKVFESML----ESGTHPNS--VTFLGIL 440
           F  +  R   D++SWNS+V        A   L +F  M     E  T+  S  ++ + IL
Sbjct: 213 FDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNIL 272

Query: 441 SACSHAGLVSRGWELFNAMFDVYKIQPGPEHYV--SMINLLGRAGKIKEAEEFVLRLPFE 498
            AC     V +  E+     +  +    P+ +V  ++I+   + G ++ A +    + F+
Sbjct: 273 PACGSLKAVPQTKEVHG---NAIRNGTFPDVFVGNALIDAYAKCGLMENAVKVFNMMEFK 329

Query: 499 PDHRIWGALLGACGFCE-GNAEIAEHAAKRLLELD-PLNAPAHVVLCNIYAASGRHVEEH 556
            D   W A++   G+ + GN E A    K + + + PL+      +   Y+  G   E  
Sbjct: 330 -DVVSWNAMVA--GYSQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHEAL 386

Query: 557 KLRMDMGLKGVRKVPGC 573
            L   M   G   +P C
Sbjct: 387 NLFRQMIFSG--SLPNC 401



 Score = 55.8 bits (133), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 47/186 (25%), Positives = 86/186 (46%), Gaps = 31/186 (16%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERN----- 72
           I  YSK G +D A+ +F  M Q++ +S+ +M++G+  +GR SEA  +F++M +       
Sbjct: 560 IDMYSKCGDVDTARHVFDSMSQKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDD 619

Query: 73  ----VVSWTAMICGLADAGRVCEARKLFEEMPERNVVS-----WNSMVVGLIRNGELNEA 123
               VV +    CG+ D G        F+ M     ++     +   +  L R+G L++A
Sbjct: 620 ITFLVVLYACSHCGMVDQG-----LSYFDSMSADYGLTPRAEHYACAIDLLARSGRLDKA 674

Query: 124 RKVFNSMPIK-NVISWNAMIAGYVECCMMGEAIVLFE-------EMEERNVVTWTSMISG 175
            +    MP++   + W A+++     C +   + L E       EM   N  ++T + + 
Sbjct: 675 WRTVKDMPMEPTAVVWVALLSA----CRVHSNVELAEHALNKLVEMNAENDGSYTLISNI 730

Query: 176 YCRAGE 181
           Y  AG 
Sbjct: 731 YATAGR 736


>gi|449493040|ref|XP_004159175.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At3g18840-like [Cucumis sativus]
          Length = 1096

 Score =  303 bits (775), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 192/622 (30%), Positives = 326/622 (52%), Gaps = 46/622 (7%)

Query: 18   ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWT 77
            IT Y+K G +++A+ LF  MP+RNV S+NA+++ ++++  L +AR LF+    +++V++ 
Sbjct: 453  ITFYAKHGLLNDAQKLFDEMPERNVFSWNAIIAAYVKSQNLRQARALFDSAVCKDLVTYN 512

Query: 78   AMICGLADA-GRVCEARKLFEEM---PERNVVSWNSMVVGLIRNGELN--EARKVFNSMP 131
            +M+ G A + G   +A   F EM   P+   +   +++  L    +L      K  +S  
Sbjct: 513  SMLSGYARSDGYQGQALGFFMEMQTAPDMIRIDEFTLITMLNLTAKLCVISYGKQLHSFM 572

Query: 132  IK-----NVISWNAMIAGYVECCMMGEAI-VLFEEMEERNVVTWTSMISGYCRAGEVEEG 185
            +K      V + +++I  Y +C    EA  V +   E  + V+  +M++  CR GE++  
Sbjct: 573  LKTANDLTVFAASSLIDMYSKCGFFKEACRVYYGCGEVVDSVSRNAMVAACCREGEIDVA 632

Query: 186  YCLF-RRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMK---------------GICDN 229
              LF + + + +VV+W  MI GF  NG+ +ESL LF+ M                  C N
Sbjct: 633  LDLFWKELEQNDVVAWNTMISGFVQNGYEEESLKLFVRMADEKVGWNEHTFASVLSACSN 692

Query: 230  GNNCNVQS-----------------CNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSM 272
              +  +                   C+ +++ Y +   +  A+++   + +++  S TSM
Sbjct: 693  LRSLKLGKEVHAYVLKNRLIANPFICSGLVDVYCKCNNMRYAESVNSELRMQNVYSITSM 752

Query: 273  IDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLN 332
            I GY S G ++ A  LF ++ ++++V WTA+  G V+ +       L  E R     P  
Sbjct: 753  IVGYSSQGNMAEARKLFDSLDEKNSVVWTALFFGYVKLQQCEAVFELLSEYRKEAKVPDV 812

Query: 333  ATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSN 392
                 + GA    A +  G+QIH  +++   + D  L + L+ MY+KCG I  A  IF  
Sbjct: 813  LILISIIGACAIQAALVPGKQIHSYMLRAGIKLDTKLTSSLVDMYSKCGSIIYAERIFRE 872

Query: 393  MVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRG 452
            +  +D + +N M+ G++HHG  NE +++F+ M++ G  P+++TF+ +LSAC H GLV  G
Sbjct: 873  VTDKDSIIYNIMIAGYAHHGWENEAVQLFKEMVKHGFKPDAITFVALLSACRHGGLVELG 932

Query: 453  WELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACG 512
               F++M + Y I P  +HY  MI+L GRA ++ +A EF+ ++P + D  IWGA L AC 
Sbjct: 933  EHFFDSMSNDYNICPEIDHYACMIDLYGRANQLDKALEFMRKIPIQLDAVIWGAFLNACR 992

Query: 513  FCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPG 572
               GNAE+A  A   LL ++  N   +V L N+YAA G   E  ++R  M  K V+K  G
Sbjct: 993  I-NGNAELARKAEDELLVIEGENGSRYVQLANVYAAEGNWEEMGRIRKKMKGKEVKKNAG 1051

Query: 573  CSWLMRNGGIQMFLSGDKIPAQ 594
            CSW+       +F+SGD+  ++
Sbjct: 1052 CSWVFVESKFHVFISGDRFHSK 1073



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 112/448 (25%), Positives = 214/448 (47%), Gaps = 39/448 (8%)

Query: 108 NSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVV 167
           N ++    ++G LN+A+K+F+ MP +NV SWNA+IA YV+   + +A  LF+    +++V
Sbjct: 450 NQLITFYAKHGLLNDAQKLFDEMPERNVFSWNAIIAAYVKSQNLRQARALFDSAVCKDLV 509

Query: 168 TWTSMISGYCRA-GEVEEGYCLFRRMPRK------------NVVSWTAMIGGFAWNGFHK 214
           T+ SM+SGY R+ G   +    F  M                +++ TA +   ++ G   
Sbjct: 510 TYNSMLSGYARSDGYQGQALGFFMEMQTAPDMIRIDEFTLITMLNLTAKLCVISY-GKQL 568

Query: 215 ESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTV-PVRDEISWTSMI 273
            S +L           N+  V + +S+I+ Y + G  +EA  ++     V D +S  +M+
Sbjct: 569 HSFML--------KTANDLTVFAASSLIDMYSKCGFFKEACRVYYGCGEVVDSVSRNAMV 620

Query: 274 DGYLSVGQVSNAYYLF-HNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLN 332
                 G++  A  LF   +   D VAW  MISG VQN    E+  LF+ M    V    
Sbjct: 621 AACCREGEIDVALDLFWKELEQNDVVAWNTMISGFVQNGYEEESLKLFVRMADEKVGWNE 680

Query: 333 ATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSN 392
            TF+ +  A     ++ LG+++H  ++K    ++  + + L+ +Y KC  +  A ++ S 
Sbjct: 681 HTFASVLSACSNLRSLKLGKEVHAYVLKNRLIANPFICSGLVDVYCKCNNMRYAESVNSE 740

Query: 393 MVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRG 452
           +  +++ S  SM++G+S  G   E  K+F+S+ E  +   +  F G +        + + 
Sbjct: 741 LRMQNVYSITSMIVGYSSQGNMAEARKLFDSLDEKNSVVWTALFFGYVK-------LQQC 793

Query: 453 WELFNAMFDVYKIQPGPEHYVSMINLLG----RAGKI--KEAEEFVLRLPFEPDHRIWGA 506
             +F  + +  K    P+  + +I+++G    +A  +  K+   ++LR   + D ++  +
Sbjct: 794 EAVFELLSEYRKEAKVPDVLI-LISIIGACAIQAALVPGKQIHSYMLRAGIKLDTKLTSS 852

Query: 507 LLGACGFCEGNAEIAEHAAKRLLELDPL 534
           L+     C G+   AE   + + + D +
Sbjct: 853 LVDMYSKC-GSIIYAERIFREVTDKDSI 879



 Score =  105 bits (263), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 79/287 (27%), Positives = 130/287 (45%), Gaps = 52/287 (18%)

Query: 218 LLFIEMKGICDNGNNCNVQS-----------CNSMINGYIRFGRLEEAQNLFDTVPVRDE 266
           L+F EMK +  +G  C++Q             N +I  Y + G L +AQ LFD +P R+ 
Sbjct: 419 LVFHEMKHL-KHGLLCHLQGIKSGFTPTIFMSNQLITFYAKHGLLNDAQKLFDEMPERNV 477

Query: 267 ISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFV-EATYLFMEMRA 325
            SW ++I  Y+    +  A  LF +   +D V + +M+SG  +++ +  +A   FMEM+ 
Sbjct: 478 FSWNAIIAAYVKSQNLRQARALFDSAVCKDLVTYNSMLSGYARSDGYQGQALGFFMEMQT 537

Query: 326 HGVPPL----NATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCG 381
              P +      T   +         I  G+Q+H  ++KT ++  +   + LI MY+KCG
Sbjct: 538 --APDMIRIDEFTLITMLNLTAKLCVISYGKQLHSFMLKTANDLTVFAASSLIDMYSKCG 595

Query: 382 V--------------------------------IDNAYNIF-SNMVSRDLVSWNSMVMGF 408
                                            ID A ++F   +   D+V+WN+M+ GF
Sbjct: 596 FFKEACRVYYGCGEVVDSVSRNAMVAACCREGEIDVALDLFWKELEQNDVVAWNTMISGF 655

Query: 409 SHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWEL 455
             +G   E+LK+F  M +     N  TF  +LSACS+   +  G E+
Sbjct: 656 VQNGYEEESLKLFVRMADEKVGWNEHTFASVLSACSNLRSLKLGKEV 702


>gi|225455746|ref|XP_002268440.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Vitis vinifera]
          Length = 881

 Score =  302 bits (774), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 192/645 (29%), Positives = 315/645 (48%), Gaps = 92/645 (14%)

Query: 41  NVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEM- 99
           +V   NA+++ + + G + EA ++FE MPERN+VSW ++ICG ++ G + E+   F EM 
Sbjct: 135 DVFVGNALIAMYGKCGLVEEAVKVFEHMPERNLVSWNSIICGFSENGFLQESFNAFREML 194

Query: 100 ---------------------PERNV---VSWNSMVVGLIRNGEL--------------- 120
                                 E ++   ++ + + V L  N EL               
Sbjct: 195 VGEESFVPDVATLVTVLPVCAGEEDIEKGMAVHGLAVKLGLNEELMVNNSLIDMYSKCRF 254

Query: 121 -NEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEME----------------- 162
            +EA+ +F+    KN++SWN+MI GY     +     L ++M+                 
Sbjct: 255 LSEAQLLFDKNDKKNIVSWNSMIGGYAREEDVCRTFYLLQKMQTEDAKMKADEFTILNVL 314

Query: 163 ------------------------ERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVV 198
                                   + N +   + I+ Y R G +     +F  M  K V 
Sbjct: 315 PVCLERSELQSLKELHGYSWRHGLQSNELVANAFIAAYTRCGALCSSERVFDLMDTKTVS 374

Query: 199 SWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQN-- 256
           SW A++ G+A N   +++L L+++M    D+G + +  +  S++    R   L   +   
Sbjct: 375 SWNALLCGYAQNSDPRKALDLYLQMT---DSGLDPDWFTIGSLLLACSRMKSLHYGEEIH 431

Query: 257 ---LFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELF 313
              L + + V D     S++  Y+  G+   A  LF  M  R  V+W  MI+G  QN L 
Sbjct: 432 GFALRNGLAV-DPFIGISLLSLYICCGKPFAAQVLFDGMEHRSLVSWNVMIAGYSQNGLP 490

Query: 314 VEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCL 373
            EA  LF +M + G+ P       + GA    + + LG+++HC  +K     D+ + + +
Sbjct: 491 DEAINLFRQMLSDGIQPYEIAIMCVCGACSQLSALRLGKELHCFALKAHLTEDIFVSSSI 550

Query: 374 ISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNS 433
           I MYAK G I  +  IF  +  +D+ SWN ++ G+  HG   E L++FE ML  G  P+ 
Sbjct: 551 IDMYAKGGCIGLSQRIFDRLREKDVASWNVIIAGYGIHGRGKEALELFEKMLRLGLKPDD 610

Query: 434 VTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVL 493
            TF GIL ACSHAGLV  G E FN M +++ I+P  EHY  ++++LGRAG+I +A   + 
Sbjct: 611 FTFTGILMACSHAGLVEDGLEYFNQMLNLHNIEPKLEHYTCVVDMLGRAGRIDDALRLIE 670

Query: 494 RLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHV 553
            +P +PD RIW +LL +C    GN  + E  A +LLEL+P     +V++ N++A SG+  
Sbjct: 671 EMPGDPDSRIWSSLLSSCRI-HGNLGLGEKVANKLLELEPEKPENYVLISNLFAGSGKWD 729

Query: 554 EEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
           +  ++R  M   G++K  GCSW+   G +  FL GD++  ++ E+
Sbjct: 730 DVRRVRGRMKDIGLQKDAGCSWIEVGGKVHNFLIGDEMLPELEEV 774



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 141/603 (23%), Positives = 241/603 (39%), Gaps = 122/603 (20%)

Query: 15  TSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEM------ 68
           T  IT YS  G   +++ +F  + ++N+  +NA++S + +N    +A  +F E+      
Sbjct: 38  TRIITMYSMCGSPSDSRMVFDKLRRKNLFQWNAIVSAYTRNELFEDAMSIFSELISVTEH 97

Query: 69  -PER---------------------------------NVVSWTAMICGLADAGRVCEARK 94
            P+                                  +V    A+I      G V EA K
Sbjct: 98  KPDNFTLPCVIKACAGLLDLGLGQIIHGMATKMDLVSDVFVGNALIAMYGKCGLVEEAVK 157

Query: 95  LFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPI---------------------- 132
           +FE MPERN+VSWNS++ G   NG L E+   F  M +                      
Sbjct: 158 VFEHMPERNLVSWNSIICGFSENGFLQESFNAFREMLVGEESFVPDVATLVTVLPVCAGE 217

Query: 133 -------------------KNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMI 173
                              + ++  N++I  Y +C  + EA +LF++ +++N+V+W SMI
Sbjct: 218 EDIEKGMAVHGLAVKLGLNEELMVNNSLIDMYSKCRFLSEAQLLFDKNDKKNIVSWNSMI 277

Query: 174 SGYCRAGEVEEGYCLFRRMPRKN--VVSWTAMIGGFAWNGFHKESLLLFIEMKGIC-DNG 230
            GY R  +V   + L ++M  ++  + +    I         +  L    E+ G    +G
Sbjct: 278 GGYAREEDVCRTFYLLQKMQTEDAKMKADEFTILNVLPVCLERSELQSLKELHGYSWRHG 337

Query: 231 NNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFH 290
              N    N+ I  Y R G L  ++ +FD +  +   SW +++ GY              
Sbjct: 338 LQSNELVANAFIAAYTRCGALCSSERVFDLMDTKTVSSWNALLCGY-------------- 383

Query: 291 NMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDL 350
                             QN    +A  L+++M   G+ P   T   L  A     ++  
Sbjct: 384 -----------------AQNSDPRKALDLYLQMTDSGLDPDWFTIGSLLLACSRMKSLHY 426

Query: 351 GRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSH 410
           G +IH   ++     D  +   L+S+Y  CG    A  +F  M  R LVSWN M+ G+S 
Sbjct: 427 GEEIHGFALRNGLAVDPFIGISLLSLYICCGKPFAAQVLFDGMEHRSLVSWNVMIAGYSQ 486

Query: 411 HGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPE 470
           +GL +E + +F  ML  G  P  +  + +  ACS    +  G EL       +  +   +
Sbjct: 487 NGLPDEAINLFRQMLSDGIQPYEIAIMCVCGACSQLSALRLGKELHCFALKAHLTE---D 543

Query: 471 HYV--SMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRL 528
            +V  S+I++  + G I  ++    RL  E D   W  ++   G   G  + A    +++
Sbjct: 544 IFVSSSIIDMYAKGGCIGLSQRIFDRLR-EKDVASWNVIIAGYGI-HGRGKEALELFEKM 601

Query: 529 LEL 531
           L L
Sbjct: 602 LRL 604



 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 98/457 (21%), Positives = 189/457 (41%), Gaps = 79/457 (17%)

Query: 39  QRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEE 98
           Q N +  NA ++ + + G L  + R+F+ M  + V SW A++CG A      +A  L+ +
Sbjct: 339 QSNELVANAFIAAYTRCGALCSSERVFDLMDTKTVSSWNALLCGYAQNSDPRKALDLYLQ 398

Query: 99  MPERNV----VSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWN-----AMIAGYVECC 149
           M +  +     +  S+++   R   L+   ++ +   ++N ++ +     ++++ Y+ C 
Sbjct: 399 MTDSGLDPDWFTIGSLLLACSRMKSLHYGEEI-HGFALRNGLAVDPFIGISLLSLYICCG 457

Query: 150 MMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAW 209
               A VLF+ ME R++V+W  MI+GY + G  +E   LFR+M    +  +   I     
Sbjct: 458 KPFAAQVLFDGMEHRSLVSWNVMIAGYSQNGLPDEAINLFRQMLSDGIQPYEIAI----- 512

Query: 210 NGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISW 269
                                  C   +C+ +    +R G+ E            D    
Sbjct: 513 ----------------------MCVCGACSQL--SALRLGK-ELHCFALKAHLTEDIFVS 547

Query: 270 TSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVP 329
           +S+ID Y   G +  +  +F  + ++D  +W  +I+G   +    EA  LF +M   G+ 
Sbjct: 548 SSIIDMYAKGGCIGLSQRIFDRLREKDVASWNVIIAGYGIHGRGKEALELFEKMLRLGLK 607

Query: 330 PLNATFSVLFGAAGATANIDLGRQIHCVLMKTES-ESDLILENCLISMYAKCGVIDNAYN 388
           P + TF+ +  A      ++ G +    ++   + E  L    C++ M  + G ID+A  
Sbjct: 608 PDDFTFTGILMACSHAGLVEDGLEYFNQMLNLHNIEPKLEHYTCVVDMLGRAGRIDDALR 667

Query: 389 IFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGL 448
           +   M                                     P+S  +  +LS+C   G 
Sbjct: 668 LIEEMPG----------------------------------DPDSRIWSSLLSSCRIHGN 693

Query: 449 VSRGWELFNAMFDVYKIQP-GPEHYVSMINLLGRAGK 484
           +  G ++ N + +   ++P  PE+YV + NL   +GK
Sbjct: 694 LGLGEKVANKLLE---LEPEKPENYVLISNLFAGSGK 727



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 99/412 (24%), Positives = 176/412 (42%), Gaps = 55/412 (13%)

Query: 30  AKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRV 89
           A+ LF  M  R++VS+N M++G+ QNG   EA  LF +M    +  +   I  +  A   
Sbjct: 462 AQVLFDGMEHRSLVSWNVMIAGYSQNGLPDEAINLFRQMLSDGIQPYEIAIMCVCGACSQ 521

Query: 90  CEARKLFEEMP--------ERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAM 141
             A +L +E+           ++   +S++    + G +  ++++F+ +  K+V SWN +
Sbjct: 522 LSALRLGKELHCFALKAHLTEDIFVSSSIIDMYAKGGCIGLSQRIFDRLREKDVASWNVI 581

Query: 142 IAGYVECCMMGEAIVLFEEM----EERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNV 197
           IAGY       EA+ LFE+M     + +  T+T ++     AG VE+G   F +M   + 
Sbjct: 582 IAGYGIHGRGKEALELFEKMLRLGLKPDDFTFTGILMACSHAGLVEDGLEYFNQMLNLHN 641

Query: 198 VS-----WTAMIGGFAWNGFHKESLLLFIEMKGICDNGN-NCNVQSCNSMINGYIRFGRL 251
           +      +T ++      G   ++L L  EM G  D+   +  + SC   I+G +  G  
Sbjct: 642 IEPKLEHYTCVVDMLGRAGRIDDALRLIEEMPGDPDSRIWSSLLSSCR--IHGNLGLGE- 698

Query: 252 EEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPD----RDAVAWTAMISGL 307
           + A  L +  P + E ++  + + +   G+  +   +   M D    +DA      + G 
Sbjct: 699 KVANKLLELEPEKPE-NYVLISNLFAGSGKWDDVRRVRGRMKDIGLQKDAGCSWIEVGGK 757

Query: 308 VQNELF----------VEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCV 357
           V N L           V  T+  +E++   +     T SVL          DL  +    
Sbjct: 758 VHNFLIGDEMLPELEEVRETWRRLEVKISSIGYTPDTGSVLH---------DLEEEDKIG 808

Query: 358 LMKTESESDLILENCL-------ISMYAK---CGVIDNAYNIFSNMVSRDLV 399
           +++  SE   I    L       + +Y     CG   NA    S +V+RD+V
Sbjct: 809 ILRGHSEKLAISFGLLNTAKGLPVRVYKNLRICGDCHNAAKFISKVVNRDIV 860



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 48/184 (26%), Positives = 98/184 (53%), Gaps = 12/184 (6%)

Query: 337 VLFGAAGATANIDLGRQIH-CVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVS 395
           VL  A G   +I++GR++H  V   T+  +D +L   +I+MY+ CG   ++  +F  +  
Sbjct: 3   VLLQACGQRKDIEVGRRLHEMVSASTQFCNDFVLNTRIITMYSMCGSPSDSRMVFDKLRR 62

Query: 396 RDLVSWNSMVMGFSHHGLANETLKVFESMLESGTH-PNSVTFLGILSACSHAGLVSRGW- 453
           ++L  WN++V  ++ + L  + + +F  ++    H P++ T   ++ AC  AGL+  G  
Sbjct: 63  KNLFQWNAIVSAYTRNELFEDAMSIFSELISVTEHKPDNFTLPCVIKAC--AGLLDLGLG 120

Query: 454 ELFNAMFDVYKIQPGPEHYV--SMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGAC 511
           ++ + M    K+    + +V  ++I + G+ G ++EA +    +P E +   W +++  C
Sbjct: 121 QIIHGM--ATKMDLVSDVFVGNALIAMYGKCGLVEEAVKVFEHMP-ERNLVSWNSII--C 175

Query: 512 GFCE 515
           GF E
Sbjct: 176 GFSE 179



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 38/142 (26%), Positives = 72/142 (50%), Gaps = 16/142 (11%)

Query: 6   HPKSLVVHLT-------SSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRL 58
           H  +L  HLT       S I  Y+K G I  ++ +F  + +++V S+N +++G+  +GR 
Sbjct: 532 HCFALKAHLTEDIFVSSSIIDMYAKGGCIGLSQRIFDRLREKDVASWNVIIAGYGIHGRG 591

Query: 59  SEARRLFEEM----PERNVVSWTAMICGLADAGRVCEARKLFEEM-----PERNVVSWNS 109
            EA  LFE+M     + +  ++T ++   + AG V +  + F +M      E  +  +  
Sbjct: 592 KEALELFEKMLRLGLKPDDFTFTGILMACSHAGLVEDGLEYFNQMLNLHNIEPKLEHYTC 651

Query: 110 MVVGLIRNGELNEARKVFNSMP 131
           +V  L R G +++A ++   MP
Sbjct: 652 VVDMLGRAGRIDDALRLIEEMP 673


>gi|356495448|ref|XP_003516589.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Glycine max]
          Length = 667

 Score =  302 bits (774), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 190/619 (30%), Positives = 308/619 (49%), Gaps = 76/619 (12%)

Query: 13  HLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERN 72
           HL    +   +   +     L  L  Q  VV+   +LS  +Q G L  A  LF+++P+ N
Sbjct: 44  HLLDQCSSMKRLKLVHAQIILHGLAAQ--VVTLGKLLSLCVQEGDLRYAHLLFDQIPQPN 101

Query: 73  VVSWTAMICGLADAGRVCEARKLFEEM----PERNVVSWNSMVVGLIRNGELNEARKVFN 128
              +  +I G +++    ++  LF +M    P  N  ++  ++          EA  + +
Sbjct: 102 KFMYNHLIRGYSNSNDPMKSLLLFRQMVSAGPMPNQFTFPFVLKACAAKPFYWEAV-IVH 160

Query: 129 SMPIK-----NVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVE 183
           +  IK     +    NA++  YV C ++  A  +F+++ +R +V                
Sbjct: 161 AQAIKLGMGPHACVQNAILTAYVACRLILSARQVFDDISDRTIV---------------- 204

Query: 184 EGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEM-------------KGICDNG 230
                          SW +MI G++  GF  E++LLF EM               +  + 
Sbjct: 205 ---------------SWNSMIAGYSKMGFCDEAILLFQEMLQLGVEADVFTLVSLLSASS 249

Query: 231 NNCNVQ-------------------SCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTS 271
            +CN+                      N++I+ Y + G L+ A+++FD +  +D +SWTS
Sbjct: 250 KHCNLDLGRFVHLYIVITGVEIDSIVTNALIDMYAKCGHLQFAKHVFDQMLDKDVVSWTS 309

Query: 272 MIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPL 331
           M++ Y + G V NA  +F++MP ++ V+W ++I  LVQ   + EA  LF  M   GV P 
Sbjct: 310 MVNAYANQGLVENAVQIFNHMPVKNVVSWNSIICCLVQEGQYTEAVELFHRMCISGVMPD 369

Query: 332 NATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFS 391
           +AT   +      T ++ LG+Q HC +        + L N LI MYAKCG +  A +IF 
Sbjct: 370 DATLVSILSCCSNTGDLALGKQAHCYICDNIITVSVTLCNSLIDMYAKCGALQTAIDIFF 429

Query: 392 NMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSR 451
            M  +++VSWN ++   + HG   E +++F+SM  SG +P+ +TF G+LSACSH+GLV  
Sbjct: 430 GMPEKNVVSWNVIIGALALHGFGEEAIEMFKSMQASGLYPDEITFTGLLSACSHSGLVDM 489

Query: 452 GWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGAC 511
           G   F+ M   ++I PG EHY  M++LLGR G + EA   + ++P +PD  +WGALLGAC
Sbjct: 490 GRYYFDIMISTFRISPGVEHYACMVDLLGRGGFLGEAMTLIQKMPVKPDVVVWGALLGAC 549

Query: 512 GFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVP 571
               GN EIA+   K+LLEL   N+  +V+L N+Y+ S R  +  K+R  M   G++K  
Sbjct: 550 RI-YGNLEIAKQIMKQLLELGRFNSGLYVLLSNMYSESQRWDDMKKIRKIMDDSGIKKCR 608

Query: 572 GCSWLMRNGGIQMFLSGDK 590
             S++  +G    F+  DK
Sbjct: 609 AISFIEIDGCCYQFMVDDK 627



 Score =  132 bits (332), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 96/347 (27%), Positives = 161/347 (46%), Gaps = 56/347 (16%)

Query: 11  VVHLTSSITKYSKRGFIDEAKALFQLMPQRNV---------------------------- 42
           +V   S I  YSK GF DEA  LFQ M Q  V                            
Sbjct: 203 IVSWNSMIAGYSKMGFCDEAILLFQEMLQLGVEADVFTLVSLLSASSKHCNLDLGRFVHL 262

Query: 43  -----------VSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCE 91
                      +  NA++  + + G L  A+ +F++M +++VVSWT+M+   A+ G V  
Sbjct: 263 YIVITGVEIDSIVTNALIDMYAKCGHLQFAKHVFDQMLDKDVVSWTSMVNAYANQGLVEN 322

Query: 92  ARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMM 151
           A ++F  MP +NVVSWNS++  L++ G+  EA ++F+ M I  V+  +A +   + CC  
Sbjct: 323 AVQIFNHMPVKNVVSWNSIICCLVQEGQYTEAVELFHRMCISGVMPDDATLVSILSCCSN 382

Query: 152 GEAIVLFEEME---ERNVVTWT-----SMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAM 203
              + L ++       N++T +     S+I  Y + G ++    +F  MP KNVVSW  +
Sbjct: 383 TGDLALGKQAHCYICDNIITVSVTLCNSLIDMYAKCGALQTAIDIFFGMPEKNVVSWNVI 442

Query: 204 IGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPV 263
           IG  A +GF +E++ +F  M+    +G   +  +   +++     G ++  +  FD +  
Sbjct: 443 IGALALHGFGEEAIEMFKSMQA---SGLYPDEITFTGLLSACSHSGLVDMGRYYFDIMIS 499

Query: 264 RDEIS-----WTSMIDGYLSVGQVSNAYYLFHNMPDR-DAVAWTAMI 304
              IS     +  M+D     G +  A  L   MP + D V W A++
Sbjct: 500 TFRISPGVEHYACMVDLLGRGGFLGEAMTLIQKMPVKPDVVVWGALL 546


>gi|49333376|gb|AAT64016.1| putative pentatricopeptide repeat protein [Gossypium hirsutum]
          Length = 805

 Score =  302 bits (774), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 175/584 (29%), Positives = 306/584 (52%), Gaps = 48/584 (8%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWT 77
           ++ Y+  G + E + +F  M ++NV  +N M+S + + G   E+  LF+ M E+ +    
Sbjct: 141 VSFYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGI---- 196

Query: 78  AMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNV-I 136
                  +  R   A +LF+++ +R+V+SWNSM+ G + NG       ++  M    + +
Sbjct: 197 -------EGKRPESAFELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDV 249

Query: 137 SWNAMIAGYVECC-----MMGEAI--VLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLF 189
               +I+  V C       +G+A+  +  +   ER +    +++  Y + G+++    +F
Sbjct: 250 DLATIISVLVGCANSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVF 309

Query: 190 RRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFG 249
            +M  +NVVSWT+MI G+  +G    ++ L  +M+     G   +V +  S+++   R G
Sbjct: 310 EKMGERNVVSWTSMIAGYTRDGRSDGAIKLLQQME---KEGVKLDVVAITSILHACARSG 366

Query: 250 RLEEAQNLFDTVPVRDEIS----WTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMIS 305
            L+  +++ D +   +  S      +++D Y   G +  A  +F  M  +D ++W  MI 
Sbjct: 367 SLDNGKDVHDYIKANNMESNLFVCNALMDMYAKCGSMEAANSVFSTMVVKDIISWNTMIG 426

Query: 306 GLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESES 365
            L                      P + T + +  A  + + ++ G++IH  +++    S
Sbjct: 427 EL---------------------KPDSRTMACVLPACASLSALERGKEIHGYILRNGYSS 465

Query: 366 DLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESML 425
           D  + N L+ +Y KCGV+  A  +F  + S+DLVSW  M+ G+  HG  NE +  F  M 
Sbjct: 466 DRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMIAGYGMHGYGNEAIATFNEMR 525

Query: 426 ESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKI 485
           ++G  P+ V+F+ IL ACSH+GL+ +GW  F  M + + I+P  EHY  M++LL R G +
Sbjct: 526 DAGIEPDEVSFISILYACSHSGLLEQGWRFFYIMKNDFNIEPKLEHYACMVDLLSRTGNL 585

Query: 486 KEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNI 545
            +A EF+  LP  PD  IWGALL  C     + E+AE  A+R+ EL+P N+  +V+L NI
Sbjct: 586 SKAYEFIETLPIAPDATIWGALLCGCRNYH-DIELAEKVAERVFELEPENSGYYVLLANI 644

Query: 546 YAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGD 589
           YA + +  E  +LR  +G +G+RK PGCSW+   G + +F+SG+
Sbjct: 645 YAEAEKWEEVKRLREKIGKQGLRKNPGCSWIEIKGKVNLFVSGN 688



 Score =  135 bits (340), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 108/447 (24%), Positives = 190/447 (42%), Gaps = 85/447 (19%)

Query: 39  QRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEE 98
              V  YNA +  F Q G L  A  L                        +C  +K   E
Sbjct: 63  DHQVTDYNAKILHFCQLGDLENAMEL------------------------ICMCKK--SE 96

Query: 99  MPERNVVSWNSMVVGLIRNGELNEARKVF-----NSMPIKNVISWNAMIAGYVECCMMGE 153
           +  +   S   +  GL       + +KV      NS+ +   +    +++ Y  C  + E
Sbjct: 97  LETKTYSSVLQLCAGL---KSFTDGKKVHSIIKSNSVGVDEALGLK-LVSFYATCGDLKE 152

Query: 154 AIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRK------------------ 195
              +F+ ME++NV  W  M+S Y + G+ +E  CLF+ M  K                  
Sbjct: 153 GRRVFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGKRPESAFELFDKLC 212

Query: 196 --NVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMI-----NGYIRF 248
             +V+SW +MI G+  NG  +  L ++ +M  +   G + ++ +  S++     +G +  
Sbjct: 213 DRDVISWNSMISGYVSNGLTERGLGIYKQMMYL---GIDVDLATIISVLVGCANSGTLSL 269

Query: 249 GRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLV 308
           G+   +  +  +   R   S T ++D Y   G +  A  +F  M +R+ V+WT+MI+G  
Sbjct: 270 GKAVHSLAIKSSFERRINFSNT-LLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYT 328

Query: 309 QNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLI 368
           ++     A  L  +M   GV       + +  A   + ++D G+ +H  +     ES+L 
Sbjct: 329 RDGRSDGAIKLLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKANNMESNLF 388

Query: 369 LENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESG 428
           + N L+ MYAKCG ++ A ++FS MV +D++SWN+M+                       
Sbjct: 389 VCNALMDMYAKCGSMEAANSVFSTMVVKDIISWNTMI---------------------GE 427

Query: 429 THPNSVTFLGILSACSHAGLVSRGWEL 455
             P+S T   +L AC+    + RG E+
Sbjct: 428 LKPDSRTMACVLPACASLSALERGKEI 454


>gi|225434622|ref|XP_002279360.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 743

 Score =  302 bits (774), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 185/557 (33%), Positives = 289/557 (51%), Gaps = 50/557 (8%)

Query: 92  ARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSM-------PIKNVISWNAMIAG 144
           A+++F+++P  N+ +WN+++     +   +++  +F  M       P K    +    A 
Sbjct: 88  AQQVFDQIPHPNLYTWNTLIRAYASSSNPHQSLLIFLRMLHQSPDFPDKFTFPFLIKAAS 147

Query: 145 YVECCMMGEAI--VLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTA 202
            +E    G+A   ++ + +   +V    S+I  Y + GE+  GY +F  +PR++VVSW +
Sbjct: 148 ELEELFTGKAFHGMVIKVLLGSDVFILNSLIHFYAKCGELGLGYRVFVNIPRRDVVSWNS 207

Query: 203 MIGGFAWNGFHKESLLLFIEM--KGICDNG-------NNCNVQS---------------- 237
           MI  F   G  +E+L LF EM  + +  NG       + C  +S                
Sbjct: 208 MITAFVQGGCPEEALELFQEMETQNVKPNGITMVGVLSACAKKSDFEFGRWVHSYIERNR 267

Query: 238 -------CNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFH 290
                   N+M++ Y + G +E+A+ LFD +P +D +SWT+M+ GY  +G+   A  +F 
Sbjct: 268 IGESLTLSNAMLDMYTKCGSVEDAKRLFDKMPEKDIVSWTTMLVGYAKIGEYDAAQGIFD 327

Query: 291 NMPDRDAVAWTAMISGLVQNELFVEATYLFMEMR-AHGVPPLNATFSVLFGAAGATANID 349
            MP++D  AW A+IS   Q     EA  LF E++ +    P   T      A      +D
Sbjct: 328 AMPNQDIAAWNALISAYEQCGKPKEALELFHELQLSKTAKPDEVTLVSTLSACAQLGAMD 387

Query: 350 LGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFS 409
           LG  IH  + K   + +  L   LI MY KCG +  A  +F ++  +D+  W++M+ G +
Sbjct: 388 LGGWIHVYIKKQGMKLNCHLTTSLIDMYCKCGDLQKALMVFHSVERKDVFVWSAMIAGLA 447

Query: 410 HHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGP 469
            HG   + + +F  M E    PN+VTF  IL ACSH GLV  G   FN M  VY + PG 
Sbjct: 448 MHGHGKDAIALFSKMQEDKVKPNAVTFTNILCACSHVGLVEEGRTFFNQMELVYGVLPGV 507

Query: 470 EHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLL 529
           +HY  M+++LGRAG ++EA E + ++P  P   +WGALLGAC   E N  +AE A  +L+
Sbjct: 508 KHYACMVDILGRAGLLEEAVELIEKMPMAPAASVWGALLGACTIHE-NVVLAEQACSQLI 566

Query: 530 ELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGD 589
           EL+P N  A+V+L NIYA +G+      LR  M   G++K PGCS +  +G +  FL GD
Sbjct: 567 ELEPGNHGAYVLLSNIYAKAGKWDRVSGLRKLMRDVGLKKEPGCSSIEVDGIVHEFLVGD 626

Query: 590 -------KIPAQVAEIL 599
                  KI A++ EI+
Sbjct: 627 NSHPSAKKIYAKLDEIV 643



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 103/393 (26%), Positives = 180/393 (45%), Gaps = 88/393 (22%)

Query: 9   SLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEM 68
           S V  L S I  Y+K G +     +F  +P+R+VVS+N+M++ F+Q G   EA  LF+EM
Sbjct: 169 SDVFILNSLIHFYAKCGELGLGYRVFVNIPRRDVVSWNSMITAFVQGGCPEEALELFQEM 228

Query: 69  PERNVVS----------------------WT-----------------AMICGLADAGRV 89
             +NV                        W                  AM+      G V
Sbjct: 229 ETQNVKPNGITMVGVLSACAKKSDFEFGRWVHSYIERNRIGESLTLSNAMLDMYTKCGSV 288

Query: 90  CEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECC 149
            +A++LF++MPE+++VSW +M+VG  + GE + A+ +F++MP +++ +WNA+I+ Y +C 
Sbjct: 289 EDAKRLFDKMPEKDIVSWTTMLVGYAKIGEYDAAQGIFDAMPNQDIAAWNALISAYEQCG 348

Query: 150 MMGEAIVLFEEME--------ERNVVT---------------W----------------- 169
              EA+ LF E++        E  +V+               W                 
Sbjct: 349 KPKEALELFHELQLSKTAKPDEVTLVSTLSACAQLGAMDLGGWIHVYIKKQGMKLNCHLT 408

Query: 170 TSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDN 229
           TS+I  YC+ G++++   +F  + RK+V  W+AMI G A +G  K+++ LF +M+   ++
Sbjct: 409 TSLIDMYCKCGDLQKALMVFHSVERKDVFVWSAMIAGLAMHGHGKDAIALFSKMQ---ED 465

Query: 230 GNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEI-----SWTSMIDGYLSVGQVSN 284
               N  +  +++      G +EE +  F+ + +   +      +  M+D     G +  
Sbjct: 466 KVKPNAVTFTNILCACSHVGLVEEGRTFFNQMELVYGVLPGVKHYACMVDILGRAGLLEE 525

Query: 285 AYYLFHNMPDRDAVA-WTAMISGLVQNELFVEA 316
           A  L   MP   A + W A++     +E  V A
Sbjct: 526 AVELIEKMPMAPAASVWGALLGACTIHENVVLA 558



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 70/285 (24%), Positives = 141/285 (49%), Gaps = 16/285 (5%)

Query: 3   ERNHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEAR 62
           ERN     +    + +  Y+K G +++AK LF  MP++++VS+  ML G+ + G    A+
Sbjct: 264 ERNRIGESLTLSNAMLDMYTKCGSVEDAKRLFDKMPEKDIVSWTTMLVGYAKIGEYDAAQ 323

Query: 63  RLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEM-----PERNVVSWNSMVVGLIRN 117
            +F+ MP +++ +W A+I      G+  EA +LF E+      + + V+  S +    + 
Sbjct: 324 GIFDAMPNQDIAAWNALISAYEQCGKPKEALELFHELQLSKTAKPDEVTLVSTLSACAQL 383

Query: 118 GELNEARKVFNSMPIK----NVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMI 173
           G ++    +   +  +    N     ++I  Y +C  + +A+++F  +E ++V  W++MI
Sbjct: 384 GAMDLGGWIHVYIKKQGMKLNCHLTTSLIDMYCKCGDLQKALMVFHSVERKDVFVWSAMI 443

Query: 174 SGYCRAGEVEEGYCLFRRMP----RKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDN 229
           +G    G  ++   LF +M     + N V++T ++   +  G  +E    F +M+ +   
Sbjct: 444 AGLAMHGHGKDAIALFSKMQEDKVKPNAVTFTNILCACSHVGLVEEGRTFFNQMELV--Y 501

Query: 230 GNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEIS-WTSMI 273
           G    V+    M++   R G LEEA  L + +P+    S W +++
Sbjct: 502 GVLPGVKHYACMVDILGRAGLLEEAVELIEKMPMAPAASVWGALL 546


>gi|225432410|ref|XP_002276935.1| PREDICTED: pentatricopeptide repeat-containing protein At2g36980,
           mitochondrial-like [Vitis vinifera]
          Length = 623

 Score =  302 bits (774), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 182/607 (29%), Positives = 315/607 (51%), Gaps = 42/607 (6%)

Query: 9   SLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEM 68
           S +   TS I   +K G I  A+ LF  MP ++ V++NAML+ + Q G   +A  LF  M
Sbjct: 3   SHLFQTTSKIVALAKLGRITSARRLFDEMPHKDTVAWNAMLASYSQLGLHQQALCLFHHM 62

Query: 69  ------PERNVVSWTAMICGLADAGRVCEARKLFEEMP----ERNVVSWNSMVVGLIRNG 118
                 P+R   ++TA +   A  G +    K+  ++     + ++   NS++    +  
Sbjct: 63  RIANSRPDR--FTFTATLSACAGLGELRRGMKIHAQVVVSGCQSSLPVGNSLIDMYGKCL 120

Query: 119 ELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCR 178
               AR+VF  M I N +SW +++  Y    +   A V+F+ M ++  + W  MISGY +
Sbjct: 121 SATSARRVFEEMSIMNEVSWCSLLFAYTSSGLFDVARVVFDGMPKKVEIAWNIMISGYGQ 180

Query: 179 AGEVEEGYCLFRRMPRKNVV--SWT--AMIG----------GFAWNGFHKESLLLFIEMK 224
            G+VE    LF++M   ++    WT  A++           G+  +GF            
Sbjct: 181 CGDVELCLGLFKKMREDSLQPDQWTFSALVNALCELQEPSYGYMMHGF------------ 228

Query: 225 GICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSN 284
            I  +G    V+  NS+++ Y + G  ++   +F+++ +  ++SW +MID ++ +G    
Sbjct: 229 -IIKSGWVKAVEVSNSILSFYSKLGCKDDVMKVFESIGILTQVSWNAMIDAHMKIGDTHE 287

Query: 285 AYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGA 344
           A+ +F   P+++ V+WT+MI+G  +N    +A   F++M  + + P + TF  +  A  +
Sbjct: 288 AFLVFQLAPEKNVVSWTSMITGYARNGHGEQALSFFVKMMENHIQPDDFTFGAVLHACSS 347

Query: 345 TANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSM 404
            A +  G+ IH  ++     + + + N L++MYAKCG I  +   F  ++ +DLVSWN+M
Sbjct: 348 LATLGHGKMIHGSIIHYGFHAYVDVGNGLVNMYAKCGDIQGSNTAFKEILGKDLVSWNAM 407

Query: 405 VMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYK 464
           + G   HG A + L+++E M+ SG  P+ VTF+G+L  CSH+GL+ +G  LF +M  VY 
Sbjct: 408 LFGLGMHGHATQALELYEEMVASGMKPDKVTFIGLLMTCSHSGLIEKGQALFESMVSVYG 467

Query: 465 IQPGPEHYVSMINLLGRAGKIKEAEEFV--LRLPFEPDHRIWGALLGACGFCEGNAEIAE 522
           +    EH V M++LLGR G + +A E V         +  +  ALLGAC F      +  
Sbjct: 468 LSQETEHVVCMVDLLGRGGYLAQARELVDEYSRTGRAETSLPEALLGAC-FAHSEVRMGA 526

Query: 523 HAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGI 582
           +  + L   +P    ++V+L N+Y  SG+  E   +R  M   GV+K+PGCSW+     +
Sbjct: 527 NLGEYLKVFEPQKEMSYVLLSNLYCVSGQWKEAEMVRKTMTDHGVKKMPGCSWIEVRNKV 586

Query: 583 QMFLSGD 589
            +F++G+
Sbjct: 587 TVFVAGN 593


>gi|115487922|ref|NP_001066448.1| Os12g0233200 [Oryza sativa Japonica Group]
 gi|77553539|gb|ABA96335.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113648955|dbj|BAF29467.1| Os12g0233200 [Oryza sativa Japonica Group]
          Length = 704

 Score =  302 bits (774), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 173/472 (36%), Positives = 265/472 (56%), Gaps = 10/472 (2%)

Query: 133 KNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRM 192
           ++V+  NA++  Y     + +A  +F+EM ER+VV+WT+++ GY RAG  +E + LF RM
Sbjct: 176 ESVLVGNALVHFYANHKSLDDAGKVFDEMPERDVVSWTTLVDGYARAGLADEAWRLFCRM 235

Query: 193 P-----RKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIR 247
                 R N V+  A +      G     ++L    K + + G   +V   N++++ + +
Sbjct: 236 VVVGGMRPNAVTLVAAVSAIGQMGLLAFGIMLH---KYVTEGGVARSVNLDNALVDMFGK 292

Query: 248 FGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGL 307
            G +  A+ +FD + V+D  SWTSM++ Y   G + +A  LF +MP R+ V+W+ MI+  
Sbjct: 293 CGCVRYAREVFDGMEVKDVYSWTSMVNAYAKCGDLESAEQLFKDMPRRNVVSWSCMIAAY 352

Query: 308 VQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIH-CVLMKTESESD 366
            Q     EA +LF EM A GV P++AT   +  A      +DLGR I+   ++  +    
Sbjct: 353 SQLNQPEEAVWLFREMIAAGVDPIDATLVSVLSACAQLGCLDLGRWIYENYIVSNKIGLT 412

Query: 367 LILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLE 426
           + L N LI M+AKCG +  A  +F  M  R++VSWN+M+M  + HG + E +++FE +  
Sbjct: 413 VNLGNALIDMFAKCGDVGEASKLFDEMAERNVVSWNTMIMAHAVHGQSEEAIRLFEQLKG 472

Query: 427 SGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIK 486
               P+ +TFLG+L++CSH+GLVS G   F  M   Y+I+P  EHY  MI+LLG+ G ++
Sbjct: 473 ENIVPDQITFLGLLASCSHSGLVSEGRRYFKEMEMFYRIEPRVEHYACMIDLLGKVGLLE 532

Query: 487 EAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIY 546
           EA E    +P E D   WGALL AC    GN EI    A +L+ELDP ++  +V++  IY
Sbjct: 533 EAFEVARGMPMEADEAGWGALLNACRM-HGNVEIGACVADKLVELDPSDSGIYVLMSQIY 591

Query: 547 AASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
           A+  +  +   LRM M  +GV+K PGCS +   G    FL  D   A   EI
Sbjct: 592 ASKNKWDQVKMLRMTMRDRGVKKNPGCSSIEVEGKFHDFLVADVSHACSEEI 643



 Score =  142 bits (357), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 106/388 (27%), Positives = 191/388 (49%), Gaps = 19/388 (4%)

Query: 41  NVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMP 100
           +V+  NA++  +  +  L +A ++F+EMPER+VVSWT ++ G A AG   EA +LF  M 
Sbjct: 177 SVLVGNALVHFYANHKSLDDAGKVFDEMPERDVVSWTTLVDGYARAGLADEAWRLFCRMV 236

Query: 101 -----ERNVVSWNSMVVGLIRNGELNEA----RKVFNSMPIKNVISWNAMIAGYVECCMM 151
                  N V+  + V  + + G L       + V      ++V   NA++  + +C  +
Sbjct: 237 VVGGMRPNAVTLVAAVSAIGQMGLLAFGIMLHKYVTEGGVARSVNLDNALVDMFGKCGCV 296

Query: 152 GEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNG 211
             A  +F+ ME ++V +WTSM++ Y + G++E    LF+ MPR+NVVSW+ MI  ++   
Sbjct: 297 RYAREVFDGMEVKDVYSWTSMVNAYAKCGDLESAEQLFKDMPRRNVVSWSCMIAAYSQLN 356

Query: 212 FHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWT- 270
             +E++ LF EM      G +    +  S+++   + G L+  + +++   V ++I  T 
Sbjct: 357 QPEEAVWLFREMIAA---GVDPIDATLVSVLSACAQLGCLDLGRWIYENYIVSNKIGLTV 413

Query: 271 ----SMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAH 326
               ++ID +   G V  A  LF  M +R+ V+W  MI     +    EA  LF +++  
Sbjct: 414 NLGNALIDMFAKCGDVGEASKLFDEMAERNVVSWNTMIMAHAVHGQSEEAIRLFEQLKGE 473

Query: 327 GVPPLNATFSVLFGAAGATANIDLGRQIHCVL-MKTESESDLILENCLISMYAKCGVIDN 385
            + P   TF  L  +   +  +  GR+    + M    E  +    C+I +  K G+++ 
Sbjct: 474 NIVPDQITFLGLLASCSHSGLVSEGRRYFKEMEMFYRIEPRVEHYACMIDLLGKVGLLEE 533

Query: 386 AYNIFSNM-VSRDLVSWNSMVMGFSHHG 412
           A+ +   M +  D   W +++     HG
Sbjct: 534 AFEVARGMPMEADEAGWGALLNACRMHG 561



 Score =  111 bits (278), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 79/272 (29%), Positives = 139/272 (51%), Gaps = 16/272 (5%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWT 77
           +  + K G +  A+ +F  M  ++V S+ +M++ + + G L  A +LF++MP RNVVSW+
Sbjct: 287 VDMFGKCGCVRYAREVFDGMEVKDVYSWTSMVNAYAKCGDLESAEQLFKDMPRRNVVSWS 346

Query: 78  AMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLI----RNGELNEARKVFNSMPIK 133
            MI   +   +  EA  LF EM    V   ++ +V ++    + G L+  R ++ +  + 
Sbjct: 347 CMIAAYSQLNQPEEAVWLFREMIAAGVDPIDATLVSVLSACAQLGCLDLGRWIYENYIVS 406

Query: 134 NVISW-----NAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCL 188
           N I       NA+I  + +C  +GEA  LF+EM ERNVV+W +MI  +   G+ EE   L
Sbjct: 407 NKIGLTVNLGNALIDMFAKCGDVGEASKLFDEMAERNVVSWNTMIMAHAVHGQSEEAIRL 466

Query: 189 FRRMPRKNVV----SWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMING 244
           F ++  +N+V    ++  ++   + +G   E    F EM+            +C  MI+ 
Sbjct: 467 FEQLKGENIVPDQITFLGLLASCSHSGLVSEGRRYFKEMEMFYRIEPRVEHYAC--MIDL 524

Query: 245 YIRFGRLEEAQNLFDTVPVR-DEISWTSMIDG 275
             + G LEEA  +   +P+  DE  W ++++ 
Sbjct: 525 LGKVGLLEEAFEVARGMPMEADEAGWGALLNA 556



 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 99/356 (27%), Positives = 156/356 (43%), Gaps = 60/356 (16%)

Query: 7   PKSLVVHLTSSITKYSKRGFIDEAKALFQLMP-----QRNVVSYNAMLSGFLQNGRLSEA 61
           P+  VV  T+ +  Y++ G  DEA  LF  M      + N V+  A +S   Q G L+  
Sbjct: 205 PERDVVSWTTLVDGYARAGLADEAWRLFCRMVVVGGMRPNAVTLVAAVSAIGQMGLLAFG 264

Query: 62  RRLFEEMPE----RNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRN 117
             L + + E    R+V    A++      G V  AR++F+ M  ++V SW SMV    + 
Sbjct: 265 IMLHKYVTEGGVARSVNLDNALVDMFGKCGCVRYAREVFDGMEVKDVYSWTSMVNAYAKC 324

Query: 118 GELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNV----VTWTSMI 173
           G+L  A ++F  MP +NV+SW+ MIA Y +     EA+ LF EM    V     T  S++
Sbjct: 325 GDLESAEQLFKDMPRRNVVSWSCMIAAYSQLNQPEEAVWLFREMIAAGVDPIDATLVSVL 384

Query: 174 SG------------------------------------YCRAGEVEEGYCLFRRMPRKNV 197
           S                                     + + G+V E   LF  M  +NV
Sbjct: 385 SACAQLGCLDLGRWIYENYIVSNKIGLTVNLGNALIDMFAKCGDVGEASKLFDEMAERNV 444

Query: 198 VSWTAMIGGFAWNGFHKESLLLFIEMKG---ICDNGNNCN-VQSCNSMINGYIRFGR--L 251
           VSW  MI   A +G  +E++ LF ++KG   + D       + SC+   +G +  GR   
Sbjct: 445 VSWNTMIMAHAVHGQSEEAIRLFEQLKGENIVPDQITFLGLLASCSH--SGLVSEGRRYF 502

Query: 252 EEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMP-DRDAVAWTAMISG 306
           +E +  +   P  +   +  MID    VG +  A+ +   MP + D   W A+++ 
Sbjct: 503 KEMEMFYRIEPRVEH--YACMIDLLGKVGLLEEAFEVARGMPMEADEAGWGALLNA 556


>gi|21741755|emb|CAD39781.1| OSJNBa0060B20.9 [Oryza sativa Japonica Group]
          Length = 897

 Score =  302 bits (774), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 190/593 (32%), Positives = 307/593 (51%), Gaps = 45/593 (7%)

Query: 39  QRNVVSYNAMLSGFLQNGRLSEARRLFEEMPER---NVVSWTAMICGLADAGRVCEARKL 95
           + NV   NA+++ + + G L EA  +F+E+ +R   +V+SW +++     +     A  L
Sbjct: 194 ESNVFICNALVAMYSRCGSLEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDL 253

Query: 96  FEEM-------PERNVVSWNSMVVGLIRNGELNEA--RKVFNSMPIKN-----VISWNAM 141
           F +M       P        S+V  L   G L      K  +   I+N     V   NA+
Sbjct: 254 FSKMTLIVHEKPTNERSDIISIVNILPACGSLKAVPQTKEVHGNAIRNGTFPDVFVGNAL 313

Query: 142 IAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKN----V 197
           I  Y +C +M  A+ +F  ME ++VV+W +M++GY ++G  E  + LF+ M ++N    V
Sbjct: 314 IDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYSQSGNFEAAFELFKNMRKENIPLDV 373

Query: 198 VSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEA--- 254
           V+WTA+I G++  G   E+L LF +M     +G+  N  +  S+++     G   +    
Sbjct: 374 VTWTAVIAGYSQRGCSHEALNLFRQM---IFSGSLPNCVTIISVLSACASLGAFSQGTEI 430

Query: 255 -----QNLFDTVP------VRDEISWTSMIDGYLSVGQVSNAYYLFHNMP--DRDAVAWT 301
                +N   T+         D + + ++ID Y        A  +F ++P  +R+ V WT
Sbjct: 431 HAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWT 490

Query: 302 AMISGLVQNELFVEATYLFMEM--RAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLM 359
            MI G  Q     +A  LF+EM    +GV P   T S +  A    A I +G+QIH  ++
Sbjct: 491 VMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVL 550

Query: 360 KTE--SESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANET 417
           +      S   + NCLI MY+KCG +D A ++F +M  +  +SW SM+ G+  HG  +E 
Sbjct: 551 RHHRYESSAYFVANCLIDMYSKCGDVDTARHVFDSMSQKSAISWTSMMTGYGMHGRGSEA 610

Query: 418 LKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMIN 477
           L +F+ M ++G  P+ +TFL +L ACSH G+V +G   F++M   Y + P  EHY   I+
Sbjct: 611 LDIFDKMRKAGFVPDDITFLVVLYACSHCGMVDQGLSYFDSMSADYGLTPRAEHYACAID 670

Query: 478 LLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAP 537
           LL R+G++ +A   V  +P EP   +W ALL AC     N E+AEHA  +L+E++  N  
Sbjct: 671 LLARSGRLDKAWRTVKDMPMEPTAVVWVALLSACRV-HSNVELAEHALNKLVEMNAENDG 729

Query: 538 AHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDK 590
           ++ ++ NIYA +GR  +  ++R  M   G++K PGCSW+    G   F  GD+
Sbjct: 730 SYTLISNIYATAGRWKDVARIRHLMKKSGIKKRPGCSWVQGQKGTASFFVGDR 782



 Score =  115 bits (289), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 103/433 (23%), Positives = 180/433 (41%), Gaps = 100/433 (23%)

Query: 139 NAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPR---- 194
             ++A Y+ C     A+++ E +     V W  +I  + + G ++    +  RM R    
Sbjct: 100 TGVVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRAGTR 159

Query: 195 ----------KNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMING 244
                     K      +   G A++G              IC NG   NV  CN+++  
Sbjct: 160 PDHFTLPHVLKACGELPSYRCGSAFHGL-------------ICCNGFESNVFICNALVAM 206

Query: 245 YIRFGRLEEAQNLFDTVPVR---DEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWT 301
           Y R G LEEA  +FD +  R   D ISW S++  ++                 + + AWT
Sbjct: 207 YSRCGSLEEASMIFDEITQRGIDDVISWNSIVSAHV-----------------KSSNAWT 249

Query: 302 AMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKT 361
           A+       +LF + T +  E   +    + +  ++L  A G+   +   +++H   ++ 
Sbjct: 250 AL-------DLFSKMTLIVHEKPTNERSDIISIVNIL-PACGSLKAVPQTKEVHGNAIRN 301

Query: 362 ESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMV---------------- 405
            +  D+ + N LI  YAKCG+++NA  +F+ M  +D+VSWN+MV                
Sbjct: 302 GTFPDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYSQSGNFEAAFELF 361

Query: 406 -------------------MGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHA 446
                               G+S  G ++E L +F  M+ SG+ PN VT + +LSAC+  
Sbjct: 362 KNMRKENIPLDVVTWTAVIAGYSQRGCSHEALNLFRQMIFSGSLPNCVTIISVLSACASL 421

Query: 447 GLVSRGWE-----LFNAMFDVYKIQPGPEH----YVSMINLLGRAGKIKEAEEFVLRLPF 497
           G  S+G E     L N +  +     G +     Y ++I++  +    K A      +P 
Sbjct: 422 GAFSQGTEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPL 481

Query: 498 EPDHRI-WGALLG 509
           E  + + W  ++G
Sbjct: 482 EERNVVTWTVMIG 494



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 107/416 (25%), Positives = 179/416 (43%), Gaps = 81/416 (19%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERN----V 73
           I  Y+K G ++ A  +F +M  ++VVS+NAM++G+ Q+G    A  LF+ M + N    V
Sbjct: 314 IDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYSQSGNFEAAFELFKNMRKENIPLDV 373

Query: 74  VSWTAMICGLADAGRVCEARKLFEEM----PERNVVSWNSMVVGLIRNGELNEARKVFNS 129
           V+WTA+I G +  G   EA  LF +M       N V+  S++      G  ++  ++ ++
Sbjct: 374 VTWTAVIAGYSQRGCSHEALNLFRQMIFSGSLPNCVTIISVLSACASLGAFSQGTEI-HA 432

Query: 130 MPIKN---------------VISWNAMIAGYVECCMMGEAIVLFEE--MEERNVVTWTSM 172
             +KN               ++ +NA+I  Y +C     A  +F++  +EERNVVTWT M
Sbjct: 433 YSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVM 492

Query: 173 ISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNN 232
           I G+ + G+  +   LF  M  +          G A N +    +L+          G  
Sbjct: 493 IGGHAQYGDSNDALKLFVEMISEPY--------GVAPNAYTISCILMACAHLAAIRIGKQ 544

Query: 233 CNVQ-------------SCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSV 279
            +                 N +I+ Y + G ++ A+++FD++  +  ISWTSM+ GY   
Sbjct: 545 IHAYVLRHHRYESSAYFVANCLIDMYSKCGDVDTARHVFDSMSQKSAISWTSMMTGYGMH 604

Query: 280 GQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLF 339
           G+ S                               EA  +F +MR  G  P + TF V+ 
Sbjct: 605 GRGS-------------------------------EALDIFDKMRKAGFVPDDITFLVVL 633

Query: 340 GAAGATANIDLGRQIHCVLMKTESESDLILEN--CLISMYAKCGVIDNAYNIFSNM 393
            A      +D G   +   M  +       E+  C I + A+ G +D A+    +M
Sbjct: 634 YACSHCGMVDQGLS-YFDSMSADYGLTPRAEHYACAIDLLARSGRLDKAWRTVKDM 688



 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 81/344 (23%), Positives = 148/344 (43%), Gaps = 42/344 (12%)

Query: 1   MSERNHPKSLVVHLTSSITKYSKRGFIDEAKALFQLM----PQRNVVSYNAMLSGFLQNG 56
           M + N P   VV  T+ I  YS+RG   EA  LF+ M       N V+  ++LS     G
Sbjct: 364 MRKENIPLD-VVTWTAVIAGYSQRGCSHEALNLFRQMIFSGSLPNCVTIISVLSACASLG 422

Query: 57  RLSEARRLFEEM--------------PERNVVSWTAMICGLADAGRVCEARKLFEEMP-- 100
             S+   +                   + +++ + A+I   +       AR +F+++P  
Sbjct: 423 AFSQGTEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLE 482

Query: 101 ERNVVSWNSMVVGLIRNGELNEARKVFNSM--------PIKNVISWNAMIAGYVECCMMG 152
           ERNVV+W  M+ G  + G+ N+A K+F  M        P    IS   M   ++    +G
Sbjct: 483 ERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIG 542

Query: 153 EAIVLF----EEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFA 208
           + I  +       E         +I  Y + G+V+    +F  M +K+ +SWT+M+ G+ 
Sbjct: 543 KQIHAYVLRHHRYESSAYFVANCLIDMYSKCGDVDTARHVFDSMSQKSAISWTSMMTGYG 602

Query: 209 WNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEIS 268
            +G   E+L +F +M+     G   +  +   ++      G +++  + FD++     ++
Sbjct: 603 MHGRGSEALDIFDKMR---KAGFVPDDITFLVVLYACSHCGMVDQGLSYFDSMSADYGLT 659

Query: 269 -----WTSMIDGYLSVGQVSNAYYLFHNMP-DRDAVAWTAMISG 306
                +   ID     G++  A+    +MP +  AV W A++S 
Sbjct: 660 PRAEHYACAIDLLARSGRLDKAWRTVKDMPMEPTAVVWVALLSA 703



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 74/317 (23%), Positives = 132/317 (41%), Gaps = 21/317 (6%)

Query: 270 TSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVP 329
           T ++  YL+ G    A  +   +    AV W  +I   ++      A  +   M   G  
Sbjct: 100 TGVVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRAGTR 159

Query: 330 PLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNI 389
           P + T   +  A G   +   G   H ++     ES++ + N L++MY++CG ++ A  I
Sbjct: 160 PDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMI 219

Query: 390 FSNMVSR---DLVSWNSMVMGFSHHGLANETLKVFESML----ESGTHPNS--VTFLGIL 440
           F  +  R   D++SWNS+V        A   L +F  M     E  T+  S  ++ + IL
Sbjct: 220 FDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNIL 279

Query: 441 SACSHAGLVSRGWELFNAMFDVYKIQPGPEHYV--SMINLLGRAGKIKEAEEFVLRLPFE 498
            AC     V +  E+     +  +    P+ +V  ++I+   + G ++ A +    + F+
Sbjct: 280 PACGSLKAVPQTKEVHG---NAIRNGTFPDVFVGNALIDAYAKCGLMENAVKVFNMMEFK 336

Query: 499 PDHRIWGALLGACGFCE-GNAEIAEHAAKRLLELD-PLNAPAHVVLCNIYAASGRHVEEH 556
            D   W A++   G+ + GN E A    K + + + PL+      +   Y+  G   E  
Sbjct: 337 -DVVSWNAMVA--GYSQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHEAL 393

Query: 557 KLRMDMGLKGVRKVPGC 573
            L   M   G   +P C
Sbjct: 394 NLFRQMIFSG--SLPNC 408



 Score = 55.8 bits (133), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 47/186 (25%), Positives = 86/186 (46%), Gaps = 31/186 (16%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERN----- 72
           I  YSK G +D A+ +F  M Q++ +S+ +M++G+  +GR SEA  +F++M +       
Sbjct: 567 IDMYSKCGDVDTARHVFDSMSQKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDD 626

Query: 73  ----VVSWTAMICGLADAGRVCEARKLFEEMPERNVVS-----WNSMVVGLIRNGELNEA 123
               VV +    CG+ D G        F+ M     ++     +   +  L R+G L++A
Sbjct: 627 ITFLVVLYACSHCGMVDQG-----LSYFDSMSADYGLTPRAEHYACAIDLLARSGRLDKA 681

Query: 124 RKVFNSMPIK-NVISWNAMIAGYVECCMMGEAIVLFE-------EMEERNVVTWTSMISG 175
            +    MP++   + W A+++     C +   + L E       EM   N  ++T + + 
Sbjct: 682 WRTVKDMPMEPTAVVWVALLSA----CRVHSNVELAEHALNKLVEMNAENDGSYTLISNI 737

Query: 176 YCRAGE 181
           Y  AG 
Sbjct: 738 YATAGR 743


>gi|15227619|ref|NP_180537.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75100656|sp|O82380.1|PP175_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g29760, chloroplastic; Flags: Precursor
 gi|3582328|gb|AAC35225.1| hypothetical protein [Arabidopsis thaliana]
 gi|330253207|gb|AEC08301.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 738

 Score =  302 bits (774), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 182/559 (32%), Positives = 290/559 (51%), Gaps = 25/559 (4%)

Query: 47  AMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVS 106
           A LS F     L  AR++F+E+P+ N  +W  +I   A       +   F +M   +   
Sbjct: 72  AALSSF---ASLEYARKVFDEIPKPNSFAWNTLIRAYASGPDPVLSIWAFLDMVSESQCY 128

Query: 107 WNSMVVGLIRNGELNEAR----KVFNSMPIK-----NVISWNAMIAGYVECCMMGEAIVL 157
            N      +       +     +  + M +K     +V   N++I  Y  C  +  A  +
Sbjct: 129 PNKYTFPFLIKAAAEVSSLSLGQSLHGMAVKSAVGSDVFVANSLIHCYFSCGDLDSACKV 188

Query: 158 FEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNV-VSWTAMIGGFAW-----NG 211
           F  ++E++VV+W SMI+G+ + G  ++   LF++M  ++V  S   M+G  +      N 
Sbjct: 189 FTTIKEKDVVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRNL 248

Query: 212 FHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTS 271
                +  +IE     +N  N N+   N+M++ Y + G +E+A+ LFD +  +D ++WT+
Sbjct: 249 EFGRQVCSYIE-----ENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTT 303

Query: 272 MIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPL 331
           M+DGY        A  + ++MP +D VAW A+IS   QN    EA  +F E++      L
Sbjct: 304 MLDGYAISEDYEAAREVLNSMPQKDIVAWNALISAYEQNGKPNEALIVFHELQLQKNMKL 363

Query: 332 NA-TFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIF 390
           N  T      A      ++LGR IH  + K     +  + + LI MY+KCG ++ +  +F
Sbjct: 364 NQITLVSTLSACAQVGALELGRWIHSYIKKHGIRMNFHVTSALIHMYSKCGDLEKSREVF 423

Query: 391 SNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVS 450
           +++  RD+  W++M+ G + HG  NE + +F  M E+   PN VTF  +  ACSH GLV 
Sbjct: 424 NSVEKRDVFVWSAMIGGLAMHGCGNEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVD 483

Query: 451 RGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGA 510
               LF+ M   Y I P  +HY  ++++LGR+G +++A +F+  +P  P   +WGALLGA
Sbjct: 484 EAESLFHQMESNYGIVPEEKHYACIVDVLGRSGYLEKAVKFIEAMPIPPSTSVWGALLGA 543

Query: 511 CGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKV 570
           C     N  +AE A  RLLEL+P N  AHV+L NIYA  G+     +LR  M + G++K 
Sbjct: 544 CKI-HANLNLAEMACTRLLELEPRNDGAHVLLSNIYAKLGKWENVSELRKHMRVTGLKKE 602

Query: 571 PGCSWLMRNGGIQMFLSGD 589
           PGCS +  +G I  FLSGD
Sbjct: 603 PGCSSIEIDGMIHEFLSGD 621



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 100/371 (26%), Positives = 181/371 (48%), Gaps = 25/371 (6%)

Query: 41  NVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMP 100
           +V   N+++  +   G L  A ++F  + E++VVSW +MI G    G   +A +LF++M 
Sbjct: 165 DVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFVQKGSPDKALELFKKME 224

Query: 101 ERNVVSWNSMVVGL------IRNGELNEARKVFNSMPIK----NVISWNAMIAGYVECCM 150
             +V + +  +VG+      IRN E    R+V + +       N+   NAM+  Y +C  
Sbjct: 225 SEDVKASHVTMVGVLSACAKIRNLEF--GRQVCSYIEENRVNVNLTLANAMLDMYTKCGS 282

Query: 151 MGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWN 210
           + +A  LF+ MEE++ VTWT+M+ GY  + + E    +   MP+K++V+W A+I  +  N
Sbjct: 283 IEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNSMPQKDIVAWNALISAYEQN 342

Query: 211 GFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVP---VRDEI 267
           G   E+L++F E++         N  +  S ++   + G LE  + +   +    +R   
Sbjct: 343 GKPNEALIVFHELQ--LQKNMKLNQITLVSTLSACAQVGALELGRWIHSYIKKHGIRMNF 400

Query: 268 SWTS-MIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAH 326
             TS +I  Y   G +  +  +F+++  RD   W+AMI GL  +    EA  +F +M+  
Sbjct: 401 HVTSALIHMYSKCGDLEKSREVFNSVEKRDVFVWSAMIGGLAMHGCGNEAVDMFYKMQEA 460

Query: 327 GVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILEN----CLISMYAKCGV 382
            V P   TF+ +F A   T  +D   +   +  + ES   ++ E     C++ +  + G 
Sbjct: 461 NVKPNGVTFTNVFCACSHTGLVD---EAESLFHQMESNYGIVPEEKHYACIVDVLGRSGY 517

Query: 383 IDNAYNIFSNM 393
           ++ A      M
Sbjct: 518 LEKAVKFIEAM 528



 Score =  118 bits (296), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 107/464 (23%), Positives = 193/464 (41%), Gaps = 126/464 (27%)

Query: 16  SSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVS 75
           S I  Y   G +D A  +F  + +++VVS+N+M++GF+Q G   +A  LF++M   +V +
Sbjct: 171 SLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFVQKGSPDKALELFKKMESEDVKA 230

Query: 76  WTAMICGLADA---------------------------------------GRVCEARKLF 96
               + G+  A                                       G + +A++LF
Sbjct: 231 SHVTMVGVLSACAKIRNLEFGRQVCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLF 290

Query: 97  EEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIV 156
           + M E++ V+W +M+ G   + +   AR+V NSMP K++++WNA+I+ Y +     EA++
Sbjct: 291 DAMEEKDNVTWTTMLDGYAISEDYEAAREVLNSMPQKDIVAWNALISAYEQNGKPNEALI 350

Query: 157 LFEEME-----ERNVVTWTSMISG-----------------------------------Y 176
           +F E++     + N +T  S +S                                    Y
Sbjct: 351 VFHELQLQKNMKLNQITLVSTLSACAQVGALELGRWIHSYIKKHGIRMNFHVTSALIHMY 410

Query: 177 CRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQ 236
            + G++E+   +F  + +++V  W+AMIGG A +G   E++ +F +M            Q
Sbjct: 411 SKCGDLEKSREVFNSVEKRDVFVWSAMIGGLAMHGCGNEAVDMFYKM------------Q 458

Query: 237 SCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRD 296
             N   NG                      +++T++       G V  A  LFH M    
Sbjct: 459 EANVKPNG----------------------VTFTNVFCACSHTGLVDEAESLFHQMESNY 496

Query: 297 AVA----WTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGR 352
            +       A I  ++    ++E    F+E  A  +PP  + +  L GA    AN++L  
Sbjct: 497 GIVPEEKHYACIVDVLGRSGYLEKAVKFIE--AMPIPPSTSVWGALLGACKIHANLNLAE 554

Query: 353 QIHCVLMKTESESD---LILENCLISMYAKCGVIDNAYNIFSNM 393
                L++ E  +D   ++L N    +YAK G  +N   +  +M
Sbjct: 555 MACTRLLELEPRNDGAHVLLSN----IYAKLGKWENVSELRKHM 594


>gi|449524410|ref|XP_004169216.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
          Length = 684

 Score =  302 bits (773), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 191/624 (30%), Positives = 314/624 (50%), Gaps = 60/624 (9%)

Query: 21  YSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLF--------------- 65
           Y   GF+++A+ LF  MP+R+VVS+N ++     NG  +EAR  +               
Sbjct: 55  YGNCGFLNDARRLFDEMPERDVVSWNTIIGLLSVNGDYTEARNYYFWMILRSVIKPNLVS 114

Query: 66  -------------EEMPER------------NVVSWTAMICGLADAGRVCEARKLFEEMP 100
                        EEM  R             V +  A++      G V    ++F E  
Sbjct: 115 VISLLPISAALEDEEMTRRIHCYSVKVGLDSQVTTCNALVDAYGKCGSVKALWQVFNETV 174

Query: 101 ERNVVSWNSMVVGLIRNGE----LNEARKVFNSMPIKNVISWNAMIAGYVE--CCMMGEA 154
           E+N VSWNS++ GL   G     LN  R + ++    N ++ ++++   VE  C   G+ 
Sbjct: 175 EKNEVSWNSIINGLACKGRCWDALNAFRMMIDAGAQPNSVTISSILPVLVELECFKAGKE 234

Query: 155 IVLFEEM--EERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGF 212
           I  F      E ++    S+I  Y ++G   E   +F  + R+N+VSW AMI  +A N  
Sbjct: 235 IHGFSMRMGTETDIFIANSLIDMYAKSGHSTEASTIFHNLDRRNIVSWNAMIANYALNRL 294

Query: 213 HKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVR-----DEI 267
             E++   I+M+   + G   N  +  +++    R G L   + +   + VR     D  
Sbjct: 295 PLEAIRFVIQMQ---ETGECPNAVTFTNVLPACARLGFLGPGKEI-HAMGVRIGLTSDLF 350

Query: 268 SWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHG 327
              S+ID Y   G + +A  +F N   +D V++  +I G  + +  +++  LF EMR  G
Sbjct: 351 VSNSLIDMYAKCGCLHSARNVF-NTSRKDEVSYNILIIGYSETDDCLQSLNLFSEMRLLG 409

Query: 328 VPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAY 387
             P   +F  +  A    A +  G+++H V ++    S L + N L+  Y KCG ID A 
Sbjct: 410 KKPDVVSFVGVISACANLAALKQGKEVHGVALRNHLYSHLFVSNSLLDFYTKCGRIDIAC 469

Query: 388 NIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAG 447
            +F+ ++ +D+ SWN+M++G+   G     + +FE+M +     + V+++ +LSACSH G
Sbjct: 470 RLFNQILFKDVASWNTMILGYGMIGELETAISMFEAMRDDTVQYDLVSYIAVLSACSHGG 529

Query: 448 LVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGAL 507
           LV RGW+ F+ M    +++P   HY  M++LLGRAG ++EA + + +LP  PD  IWGAL
Sbjct: 530 LVERGWQYFSEML-AQRLEPTEMHYTCMVDLLGRAGFVEEAAKLIQQLPIAPDANIWGAL 588

Query: 508 LGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGV 567
           LGAC    GN E+   AA+ L EL P +   +++L NIYA +GR  E +K+R  M  +G 
Sbjct: 589 LGACRI-YGNVELGRRAAEHLFELKPQHCGYYILLSNIYAETGRWDEANKIRELMKSRGA 647

Query: 568 RKVPGCSWLMRNGGIQMFLSGDKI 591
           +K PGCSW+     +  F++ +++
Sbjct: 648 KKNPGCSWVQIYDQVHAFVAEERV 671



 Score = 62.0 bits (149), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 60/251 (23%), Positives = 108/251 (43%), Gaps = 22/251 (8%)

Query: 323 MRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGV 382
           M   GV   + TF  +      + +I  G ++H V+ K   ++D+ + N L+ +Y  CG 
Sbjct: 1   MVRRGVQLDDHTFPFVLKLCSDSFDICKGMEVHGVVFKLGFDTDVYVGNTLLMLYGNCGF 60

Query: 383 IDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLK-VFESMLESGTHPNSVTFLGILS 441
           +++A  +F  M  RD+VSWN+++   S +G   E     F  +L S   PN V+ + +L 
Sbjct: 61  LNDARRLFDEMPERDVVSWNTIIGLLSVNGDYTEARNYYFWMILRSVIKPNLVSVISLLP 120

Query: 442 ACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLL----GRAGKIKEAEEFVLRLPF 497
               A L     E        Y ++ G +  V+  N L    G+ G +K   + V     
Sbjct: 121 I--SAALED---EEMTRRIHCYSVKVGLDSQVTTCNALVDAYGKCGSVKALWQ-VFNETV 174

Query: 498 EPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAA--------S 549
           E +   W +++     C+G    A +A + +  +D    P  V + +I           +
Sbjct: 175 EKNEVSWNSIINGLA-CKGRCWDALNAFRMM--IDAGAQPNSVTISSILPVLVELECFKA 231

Query: 550 GRHVEEHKLRM 560
           G+ +    +RM
Sbjct: 232 GKEIHGFSMRM 242



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 45/150 (30%), Positives = 71/150 (47%), Gaps = 9/150 (6%)

Query: 4   RNHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARR 63
           RNH  S +    S +  Y+K G ID A  LF  +  ++V S+N M+ G+   G L  A  
Sbjct: 442 RNHLYSHLFVSNSLLDFYTKCGRIDIACRLFNQILFKDVASWNTMILGYGMIGELETAIS 501

Query: 64  LFEEMPERNV----VSWTAMICGLADAGRVCEARKLFEEMPERNV----VSWNSMVVGLI 115
           +FE M +  V    VS+ A++   +  G V    + F EM  + +    + +  MV  L 
Sbjct: 502 MFEAMRDDTVQYDLVSYIAVLSACSHGGLVERGWQYFSEMLAQRLEPTEMHYTCMVDLLG 561

Query: 116 RNGELNEARKVFNSMPIK-NVISWNAMIAG 144
           R G + EA K+   +PI  +   W A++  
Sbjct: 562 RAGFVEEAAKLIQQLPIAPDANIWGALLGA 591


>gi|356532944|ref|XP_003535029.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21300-like [Glycine max]
          Length = 813

 Score =  302 bits (773), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 208/664 (31%), Positives = 324/664 (48%), Gaps = 79/664 (11%)

Query: 5   NHPKSLVVHLTSS--------------ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLS 50
           N P  +VVH T+               I  Y+  G+I +A+ +F  +P R+ + +N ML 
Sbjct: 127 NVPLCMVVHDTARSLGFHVDLFAGSALIKLYADNGYIRDARRVFDELPLRDTILWNVMLR 186

Query: 51  GFLQNGRLSEARRLFEEMPER----NVVSWTAMICGLADAGRVCEARKL--------FEE 98
           G++++G    A   F EM       N V++T ++   A  G  C   +L        FE 
Sbjct: 187 GYVKSGDFDNAIGTFCEMRTSYSMVNSVTYTCILSICATRGNFCAGTQLHGLVIGSGFEF 246

Query: 99  MPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLF 158
            P+      N++V    + G L  ARK+FN+MP  + ++WN +IAGYV+     EA  LF
Sbjct: 247 DPQVA----NTLVAMYSKCGNLLYARKLFNTMPQTDTVTWNGLIAGYVQNGFTDEAAPLF 302

Query: 159 EEMEERNV----VTWTS-----------------------------------MISGYCRA 179
             M    V    VT+ S                                   +I  Y + 
Sbjct: 303 NAMISAGVKPDSVTFASFLPSILESGSLRHCKEVHSYIVRHRVPFDVYLKSALIDVYFKG 362

Query: 180 GEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCN 239
           G+VE    +F++    +V   TAMI G+  +G + +++  F   + +   G   N  +  
Sbjct: 363 GDVEMARKIFQQNILVDVAVCTAMISGYVLHGLNIDAINTF---RWLIQEGMVTNSLTMA 419

Query: 240 SMINGYIRFGRLEEAQNLFDTVPVRDEIS-----WTSMIDGYLSVGQVSNAYYLFHNMPD 294
           S++        L+  + L   + ++  +       +++ D Y   G++  AY  F  M D
Sbjct: 420 SVLPACAAVAALKPGKELHCHI-LKKRLENIVNVGSAITDMYAKCGRLDLAYEFFRRMSD 478

Query: 295 RDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQI 354
           RD+V W +MIS   QN     A  LF +M   G    + + S    AA     +  G+++
Sbjct: 479 RDSVCWNSMISSFSQNGKPEIAIDLFRQMGMSGAKFDSVSLSSALSAAANLPALYYGKEM 538

Query: 355 HCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLA 414
           H  +++    SD  + + LI MY+KCG +  A+ +F+ M  ++ VSWNS++  + +HG  
Sbjct: 539 HGYVIRNAFSSDTFVASTLIDMYSKCGNLALAWCVFNLMDGKNEVSWNSIIAAYGNHGCP 598

Query: 415 NETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVS 474
            E L ++  ML +G HP+ VTFL I+SAC HAGLV  G   F+ M   Y I    EHY  
Sbjct: 599 RECLDLYHEMLRAGIHPDHVTFLVIISACGHAGLVDEGIHYFHCMTREYGIGARMEHYAC 658

Query: 475 MINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPL 534
           M++L GRAG++ EA + +  +PF PD  +WG LLGAC    GN E+A+ A++ LLELDP 
Sbjct: 659 MVDLYGRAGRVHEAFDTIKSMPFTPDAGVWGTLLGACRL-HGNVELAKLASRHLLELDPK 717

Query: 535 NAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQ 594
           N+  +V+L N++A +G      K+R  M  KGV+K+PG SW+  NGG  MF + D    +
Sbjct: 718 NSGYYVLLSNVHADAGEWASVLKVRSLMKEKGVQKIPGYSWIDVNGGTHMFSAADGNHPE 777

Query: 595 VAEI 598
             EI
Sbjct: 778 SVEI 781



 Score =  148 bits (374), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 140/581 (24%), Positives = 237/581 (40%), Gaps = 105/581 (18%)

Query: 25  GFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEM------PERNVVSWTA 78
           G   +A  LF  +  R  + +N M+ G    G    A   + +M      P++    +  
Sbjct: 60  GRFRDAGNLFFELELRYALPWNWMIRGLYMLGWFDFALLFYFKMLGSNVSPDKYTFPYVI 119

Query: 79  MICGLADAGRVC-----EARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIK 133
             CG  +   +C      AR L   +   ++ + ++++     NG + +AR+VF+ +P++
Sbjct: 120 KACGGLNNVPLCMVVHDTARSLGFHV---DLFAGSALIKLYADNGYIRDARRVFDELPLR 176

Query: 134 NVISWNAMIAGYVECCMMGEAIVLFEEMEER----NVVTWT------------------- 170
           + I WN M+ GYV+      AI  F EM       N VT+T                   
Sbjct: 177 DTILWNVMLRGYVKSGDFDNAIGTFCEMRTSYSMVNSVTYTCILSICATRGNFCAGTQLH 236

Query: 171 ----------------SMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHK 214
                           ++++ Y + G +     LF  MP+ + V+W  +I G+  NGF  
Sbjct: 237 GLVIGSGFEFDPQVANTLVAMYSKCGNLLYARKLFNTMPQTDTVTWNGLIAGYVQNGFTD 296

Query: 215 ESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISW----- 269
           E+  LF  M      G   +  +  S +   +  G L   + +   + VR  + +     
Sbjct: 297 EAAPLFNAM---ISAGVKPDSVTFASFLPSILESGSLRHCKEVHSYI-VRHRVPFDVYLK 352

Query: 270 TSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVP 329
           +++ID Y   G V  A  +F      D    TAMISG V + L ++A   F  +   G+ 
Sbjct: 353 SALIDVYFKGGDVEMARKIFQQNILVDVAVCTAMISGYVLHGLNIDAINTFRWLIQEGMV 412

Query: 330 PLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNI 389
             + T + +  A  A A +  G+++HC ++K   E+ + + + +  MYAKCG +D AY  
Sbjct: 413 TNSLTMASVLPACAAVAALKPGKELHCHILKKRLENIVNVGSAITDMYAKCGRLDLAYEF 472

Query: 390 FSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSV--------------- 434
           F  M  RD V WNSM+  FS +G     + +F  M  SG   +SV               
Sbjct: 473 FRRMSDRDSVCWNSMISSFSQNGKPEIAIDLFRQMGMSGAKFDSVSLSSALSAAANLPAL 532

Query: 435 ------------------TFLG--ILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVS 474
                             TF+   ++   S  G ++  W +FN M    ++      + S
Sbjct: 533 YYGKEMHGYVIRNAFSSDTFVASTLIDMYSKCGNLALAWCVFNLMDGKNEVS-----WNS 587

Query: 475 MINLLGRAGKIKEAEEF---VLRLPFEPDHRIWGALLGACG 512
           +I   G  G  +E  +    +LR    PDH  +  ++ ACG
Sbjct: 588 IIAAYGNHGCPRECLDLYHEMLRAGIHPDHVTFLVIISACG 628



 Score =  112 bits (279), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 76/298 (25%), Positives = 139/298 (46%), Gaps = 13/298 (4%)

Query: 176 YCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCN- 234
           Y   G   +   LF  +  +  + W  MI G    G+   +LL + +M G   + +    
Sbjct: 56  YVLCGRFRDAGNLFFELELRYALPWNWMIRGLYMLGWFDFALLFYFKMLGSNVSPDKYTF 115

Query: 235 ---VQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHN 291
              +++C  + N  +     + A++L   V   D  + +++I  Y   G + +A  +F  
Sbjct: 116 PYVIKACGGLNNVPLCMVVHDTARSLGFHV---DLFAGSALIKLYADNGYIRDARRVFDE 172

Query: 292 MPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLG 351
           +P RD + W  M+ G V++  F  A   F EMR       + T++ +        N   G
Sbjct: 173 LPLRDTILWNVMLRGYVKSGDFDNAIGTFCEMRTSYSMVNSVTYTCILSICATRGNFCAG 232

Query: 352 RQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHH 411
            Q+H +++ +  E D  + N L++MY+KCG +  A  +F+ M   D V+WN ++ G+  +
Sbjct: 233 TQLHGLVIGSGFEFDPQVANTLVAMYSKCGNLLYARKLFNTMPQTDTVTWNGLIAGYVQN 292

Query: 412 GLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAM------FDVY 463
           G  +E   +F +M+ +G  P+SVTF   L +   +G +    E+ + +      FDVY
Sbjct: 293 GFTDEAAPLFNAMISAGVKPDSVTFASFLPSILESGSLRHCKEVHSYIVRHRVPFDVY 350



 Score = 44.3 bits (103), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 42/189 (22%), Positives = 71/189 (37%), Gaps = 24/189 (12%)

Query: 331 LNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIF 390
           L      LF A    + +   RQ+H  ++           + ++ +Y  CG   +A N+F
Sbjct: 10  LTTQLESLFRACSDASMVQQARQVHTQVIVGGMGDVCAPSSRVLGLYVLCGRFRDAGNLF 69

Query: 391 SNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACS------ 444
             +  R  + WN M+ G    G  +  L  +  ML S   P+  TF  ++ AC       
Sbjct: 70  FELELRYALPWNWMIRGLYMLGWFDFALLFYFKMLGSNVSPDKYTFPYVIKACGGLNNVP 129

Query: 445 -----HAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEP 499
                H    S G+ +     D++          ++I L    G I++A      LP   
Sbjct: 130 LCMVVHDTARSLGFHV-----DLFAGS-------ALIKLYADNGYIRDARRVFDELPLR- 176

Query: 500 DHRIWGALL 508
           D  +W  +L
Sbjct: 177 DTILWNVML 185


>gi|297807711|ref|XP_002871739.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297317576|gb|EFH47998.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 850

 Score =  302 bits (773), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 191/610 (31%), Positives = 310/610 (50%), Gaps = 64/610 (10%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPER------ 71
           +  YS+ G + +A+ +F  MP  +VVS+N+++  + + G+   A  +F +M         
Sbjct: 169 VAMYSRCGSLSDARKVFDEMPVWDVVSWNSIIESYAKLGKPKMALEMFSKMTNEFGFRPD 228

Query: 72  -----NVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKV 126
                NV+   A + G    G+      +  EM + N+   N +V    + G ++EA  V
Sbjct: 229 DITLVNVLPPCASV-GTRSLGKQFHGFAVTSEMIQ-NMFVGNCLVDMYAKFGMMDEANTV 286

Query: 127 FNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEER----NVVTWTSMISGYCRAGEV 182
           F++MP+K+V+SWNAM+AGY +     +A+ LFE+M+E     +VVTW++ ISGY + G  
Sbjct: 287 FSNMPVKDVVSWNAMVAGYSQIGRFEDAVRLFEQMQEEKIKMDVVTWSAAISGYAQRGLG 346

Query: 183 EEGYCLFRRM----PRKNVVSWTAMIGGFAWNG-------FHKESLLLFIEMKGICDNGN 231
            E   + R+M     + N V+  +++ G A  G        H  ++   ++++    NG+
Sbjct: 347 YEALGVCRQMLSSGIKPNEVTLISVLSGCASVGALMHGKEIHCYAIKYPMDLR---KNGH 403

Query: 232 NCNVQSCNSMINGYIRFGRLEEAQNLFDTVPV--RDEISWTSMIDGYLSVGQVSNAYYLF 289
                  N +I+ Y +  +++ A+ +FD++    RD ++WT MI GY   G  + A  L 
Sbjct: 404 GDENMVINQLIDMYAKCKKVDIARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELL 463

Query: 290 HNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANID 349
             M + D                                 P   T S    A  + A + 
Sbjct: 464 SEMFEEDC-----------------------------QTRPNAFTISCALVACASLAALS 494

Query: 350 LGRQIHCVLMKTESES-DLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGF 408
           +G+QIH   ++ +  +  L + NCLI MYAKCG I +A  +F NM+ ++ V+W S++ G+
Sbjct: 495 IGKQIHAYALRNQQNAVPLFVSNCLIDMYAKCGDIGDARLVFDNMMEKNEVTWTSLMTGY 554

Query: 409 SHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPG 468
             HG   E L +FE M   G   + VT L +L ACSH+G++ +G E FN M   + + PG
Sbjct: 555 GMHGYGEEALGIFEEMRRIGFKLDGVTLLVVLYACSHSGMIDQGMEYFNRMKTDFGVSPG 614

Query: 469 PEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRL 528
           PEHY  +++LLGRAG++  A   +  +P EP   +W ALL  C    G  E+ E+AAK++
Sbjct: 615 PEHYACLVDLLGRAGRLNAALRLIEEMPMEPPPVVWVALLSCCRI-HGKVELGEYAAKKI 673

Query: 529 LELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSG 588
            EL   N  ++ +L N+YA +GR  +  ++R  M  KG++K PGCSW+    G   F  G
Sbjct: 674 TELASNNDGSYTLLSNMYANAGRWKDVTRIRSLMRHKGIKKRPGCSWVEGIKGTTTFFVG 733

Query: 589 DKIPAQVAEI 598
           DK      EI
Sbjct: 734 DKTHPHAKEI 743



 Score =  168 bits (425), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 156/588 (26%), Positives = 266/588 (45%), Gaps = 77/588 (13%)

Query: 27  IDEAKALFQLMPQRNVVSYNA---MLSGFLQNGRLSEARRLFEEMPERN--VVSWTAMIC 81
           I + K + Q +    +++ N    ++S ++  G LS A  L    P  +  V  W ++I 
Sbjct: 41  ISQVKLIHQKLLSFGILTLNLTSHLISTYISLGCLSHAVSLLRRFPPSDAGVYHWNSLIR 100

Query: 82  GLADAGRVCEARKLFEEM------PERNVVSWNSMVVGLIRNGELNEARKVFNSMP--IK 133
              + GR  +    F  M      P+     +     G I +    ++    + +   + 
Sbjct: 101 SYGNNGRANKCLSSFCLMHSLSWTPDNYTFPFVFKACGEISSVRCGDSSHALSRVTGFMS 160

Query: 134 NVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMP 193
           NV   NA++A Y  C  + +A  +F+EM   +VV+W S+I  Y + G+ +    +F +M 
Sbjct: 161 NVFVGNALVAMYSRCGSLSDARKVFDEMPVWDVVSWNSIIESYAKLGKPKMALEMFSKMT 220

Query: 194 RK-----------NVVSWTAMIG----GFAWNGFHKESLLLFIEMKGICDNGNNCNVQSC 238
            +           NV+   A +G    G  ++GF   S ++            N  V +C
Sbjct: 221 NEFGFRPDDITLVNVLPPCASVGTRSLGKQFHGFAVTSEMI-----------QNMFVGNC 269

Query: 239 NSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDR--- 295
             +++ Y +FG ++EA  +F  +PV+D +SW +M+ GY  +G+  +A  LF  M +    
Sbjct: 270 --LVDMYAKFGMMDEANTVFSNMPVKDVVSWNAMVAGYSQIGRFEDAVRLFEQMQEEKIK 327

Query: 296 -DAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATF-SVLFGAAGATANIDLGRQ 353
            D V W+A ISG  Q  L  EA  +  +M + G+ P   T  SVL G A   A +  G++
Sbjct: 328 MDVVTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTLISVLSGCASVGALMH-GKE 386

Query: 354 IHCVLMKTESE-------SDLILENCLISMYAKCGVIDNAYNIFSNMV--SRDLVSWNSM 404
           IHC  +K   +        + ++ N LI MYAKC  +D A  +F ++    RD+V+W  M
Sbjct: 387 IHCYAIKYPMDLRKNGHGDENMVINQLIDMYAKCKKVDIARAMFDSLSPKERDVVTWTVM 446

Query: 405 VMGFSHHGLANETLKVFESMLESG--THPNSVTFLGILSACSHAGLVSRGWELFNAMFDV 462
           + G+S HG AN+ L++   M E    T PN+ T    L AC+    +S G ++    + +
Sbjct: 447 IGGYSQHGDANKALELLSEMFEEDCQTRPNAFTISCALVACASLAALSIGKQIH--AYAL 504

Query: 463 YKIQPGPEHYVS--MINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALL---GACGFCEGN 517
              Q     +VS  +I++  + G I +A   V     E +   W +L+   G  G+ E  
Sbjct: 505 RNQQNAVPLFVSNCLIDMYAKCGDIGDA-RLVFDNMMEKNEVTWTSLMTGYGMHGYGEEA 563

Query: 518 AEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLK 565
             I E   +   +LD +      +L  +YA S      H   +D G++
Sbjct: 564 LGIFEEMRRIGFKLDGVT-----LLVVLYACS------HSGMIDQGME 600



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 80/370 (21%), Positives = 157/370 (42%), Gaps = 72/370 (19%)

Query: 5   NHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQR----NVVSYNAMLSGFLQNGRLSE 60
           N P   VV   + +  YS+ G  ++A  LF+ M +     +VV+++A +SG+ Q G   E
Sbjct: 289 NMPVKDVVSWNAMVAGYSQIGRFEDAVRLFEQMQEEKIKMDVVTWSAAISGYAQRGLGYE 348

Query: 61  A----RRLFEEMPERNVVSWTAMICGLADAG----------------------------- 87
           A    R++     + N V+  +++ G A  G                             
Sbjct: 349 ALGVCRQMLSSGIKPNEVTLISVLSGCASVGALMHGKEIHCYAIKYPMDLRKNGHGDENM 408

Query: 88  -------------RVCEARKLFEEM--PERNVVSWNSMVVGLIRNGELNEARKVFNSM-- 130
                        +V  AR +F+ +   ER+VV+W  M+ G  ++G+ N+A ++ + M  
Sbjct: 409 VINQLIDMYAKCKKVDIARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFE 468

Query: 131 ------PIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTW---TSMISGYCRAGE 181
                 P    IS   +    +    +G+ I  +    ++N V       +I  Y + G+
Sbjct: 469 EDCQTRPNAFTISCALVACASLAALSIGKQIHAYALRNQQNAVPLFVSNCLIDMYAKCGD 528

Query: 182 VEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSM 241
           + +   +F  M  KN V+WT+++ G+  +G+ +E+L +F EM+ I   G   +  +   +
Sbjct: 529 IGDARLVFDNMMEKNEVTWTSLMTGYGMHGYGEEALGIFEEMRRI---GFKLDGVTLLVV 585

Query: 242 INGYIRFGRLEEAQNLFDTVPVRDEIS-----WTSMIDGYLSVGQVSNAYYLFHNMP-DR 295
           +      G +++    F+ +     +S     +  ++D     G+++ A  L   MP + 
Sbjct: 586 LYACSHSGMIDQGMEYFNRMKTDFGVSPGPEHYACLVDLLGRAGRLNAALRLIEEMPMEP 645

Query: 296 DAVAWTAMIS 305
             V W A++S
Sbjct: 646 PPVVWVALLS 655


>gi|125547694|gb|EAY93516.1| hypothetical protein OsI_15309 [Oryza sativa Indica Group]
          Length = 613

 Score =  302 bits (773), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 176/523 (33%), Positives = 274/523 (52%), Gaps = 44/523 (8%)

Query: 77  TAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRN-GELNEARKVFNSMPIKNV 135
           TA +      G +  A + F   P +   ++N ++ G  R  G L +AR +F+ +P  +V
Sbjct: 21  TAAVAAAVRHGDLAGAEEAFVSTPRKTTATYNCLLAGYARAPGRLADARHLFDRIPTPDV 80

Query: 136 ISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRK 195
           +S+N ++  +        A  LF  M  R+V +W +M+SG  ++G VEE   +F  MP +
Sbjct: 81  VSYNTLLLCHFASGDADGARRLFASMPVRDVASWNTMVSGLSKSGAVEEAKVVFLAMPVR 140

Query: 196 NVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQ 255
           N VSW                                      N+M++G+   G +  A+
Sbjct: 141 NSVSW--------------------------------------NAMVSGFACSGDMSTAE 162

Query: 256 NLFDTVPVR-DEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFV 314
             F   P + D + WT+M+ GY+ +G V  A   F  MP R+ V+W A+++G V+N    
Sbjct: 163 EWFRNAPEKEDAVLWTAMVSGYMDIGNVVKAIKYFEAMPVRNLVSWNAVVAGYVKNSHAD 222

Query: 315 EATYLFMEM-RAHGVPPLNATFS-VLFGAAGATANIDLGRQIHCVLMKTESESDLILENC 372
           +A  LF  M R   V P  +T S VL G +  +A +  G+QIH   MK     +L +   
Sbjct: 223 DALRLFRTMVREANVQPNASTLSSVLLGCSNLSA-LGFGKQIHQWCMKLLLSRNLTVGTS 281

Query: 373 LISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPN 432
           L+SMY KCG + +A  +F  M +RD+V+WN+M+ G++ HG   E + +FE M + G  PN
Sbjct: 282 LVSMYCKCGDLSSACILFGEMHTRDVVAWNAMISGYAQHGDGKEAINLFERMKDEGVEPN 341

Query: 433 SVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFV 492
            +TF+ +L+AC H GL   G + F  M ++Y I+P  +HY  M++LL RAGK++ A +F+
Sbjct: 342 WITFVVVLTACIHTGLCDFGIQCFEGMQELYGIEPRVDHYSCMVDLLCRAGKLERAVDFI 401

Query: 493 LRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRH 552
             +PFEP    +G LL AC   + N E AE AA +L+E DP +A A+V L NIYA + + 
Sbjct: 402 RSMPFEPHPSAYGTLLAACRVYK-NLEFAELAAGKLIEKDPQSAGAYVQLANIYAVANQW 460

Query: 553 VEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQV 595
            +  ++R  M    V K PG SW+   G +  F S D++  Q+
Sbjct: 461 DDVSRVRRWMKDNTVVKTPGYSWIEIKGVLHEFRSNDRLHPQL 503



 Score =  197 bits (500), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 134/403 (33%), Positives = 211/403 (52%), Gaps = 24/403 (5%)

Query: 4   RNHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQN-GRLSEAR 62
           R+  +SL    T+++    + G +  A+  F   P++   +YN +L+G+ +  GRL++AR
Sbjct: 13  RSRARSLS---TAAVAAAVRHGDLAGAEEAFVSTPRKTTATYNCLLAGYARAPGRLADAR 69

Query: 63  RLFEEMPERNVVSW-TAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELN 121
            LF+ +P  +VVS+ T ++C  A +G    AR+LF  MP R+V SWN+MV GL ++G + 
Sbjct: 70  HLFDRIPTPDVVSYNTLLLCHFA-SGDADGARRLFASMPVRDVASWNTMVSGLSKSGAVE 128

Query: 122 EARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEER-NVVTWTSMISGYCRAG 180
           EA+ VF +MP++N +SWNAM++G+     M  A   F    E+ + V WT+M+SGY   G
Sbjct: 129 EAKVVFLAMPVRNSVSWNAMVSGFACSGDMSTAEEWFRNAPEKEDAVLWTAMVSGYMDIG 188

Query: 181 EVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNS 240
            V +    F  MP +N+VSW A++ G+  N    ++L LF  M  + +     N  + +S
Sbjct: 189 NVVKAIKYFEAMPVRNLVSWNAVVAGYVKNSHADDALRLFRTM--VREANVQPNASTLSS 246

Query: 241 MING-----YIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDR 295
           ++ G      + FG+ +  Q     +  R+    TS++  Y   G +S+A  LF  M  R
Sbjct: 247 VLLGCSNLSALGFGK-QIHQWCMKLLLSRNLTVGTSLVSMYCKCGDLSSACILFGEMHTR 305

Query: 296 DAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIH 355
           D VAW AMISG  Q+    EA  LF  M+  GV P   TF V+  A   T   D G  I 
Sbjct: 306 DVVAWNAMISGYAQHGDGKEAINLFERMKDEGVEPNWITFVVVLTACIHTGLCDFG--IQ 363

Query: 356 CV-----LMKTESESDLILENCLISMYAKCGVIDNAYNIFSNM 393
           C      L   E   D    +C++ +  + G ++ A +   +M
Sbjct: 364 CFEGMQELYGIEPRVDHY--SCMVDLLCRAGKLERAVDFIRSM 404



 Score = 59.3 bits (142), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 50/133 (37%), Positives = 64/133 (48%), Gaps = 19/133 (14%)

Query: 15  TSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERN-- 72
           TS ++ Y K G +  A  LF  M  R+VV++NAM+SG+ Q+G   EA  LFE M +    
Sbjct: 280 TSLVSMYCKCGDLSSACILFGEMHTRDVVAWNAMISGYAQHGDGKEAINLFERMKDEGVE 339

Query: 73  ------VVSWTAMI-CGLADAGRVCEARKLFEEMP-----ERNVVSWNSMVVGLIRNGEL 120
                 VV  TA I  GL D G  C     FE M      E  V  ++ MV  L R G+L
Sbjct: 340 PNWITFVVVLTACIHTGLCDFGIQC-----FEGMQELYGIEPRVDHYSCMVDLLCRAGKL 394

Query: 121 NEARKVFNSMPIK 133
             A     SMP +
Sbjct: 395 ERAVDFIRSMPFE 407


>gi|224107052|ref|XP_002333576.1| predicted protein [Populus trichocarpa]
 gi|222837227|gb|EEE75606.1| predicted protein [Populus trichocarpa]
          Length = 781

 Score =  302 bits (773), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 200/630 (31%), Positives = 319/630 (50%), Gaps = 63/630 (10%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEM------PER 71
           I  Y + G    A+ LF  MP RN V++  ++SG+ QNG   +A  + +EM      P R
Sbjct: 42  INVYVRIGDCVSARKLFDEMPDRNGVTWACLISGYTQNGMPEDACGVLKEMIFEGFLPNR 101

Query: 72  --------------------NVVSWTAMICGLADA---------------GRVCEARKLF 96
                                 V   A+  GL DA               G +  AR +F
Sbjct: 102 FAFGSAIRACQESMLWRRKGRQVHGYAIRTGLNDAKVAVGNGLINMYAKCGDIDHARSVF 161

Query: 97  EEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWN-AMIAGYVEC----CMM 151
             M +++ VSWNSM+ GL +N    +A K +NSM    ++  N A+I+    C    C++
Sbjct: 162 GLMVDKDSVSWNSMITGLDQNKCFEDAVKSYNSMRKTGLMPSNFALISALSSCASLGCIL 221

Query: 152 ------GEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIG 205
                 GE I L  +M+   V    ++++ Y     + E   +F  M  ++ VSW  +IG
Sbjct: 222 LGQQTHGEGIKLGLDMD---VSVSNTLLALYAETSRLAECQKVFSWMLERDQVSWNTVIG 278

Query: 206 GFAWNGFH-KESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVR 264
             A +G    E++ +F+EM     + N     +  + ++         +   L     V+
Sbjct: 279 ALADSGASVSEAIEVFLEMMRAGWSPNRVTFINLLATVSSLSTSKLSHQIHALILKYNVK 338

Query: 265 DEISW-TSMIDGYLSVGQVSNAYYLFHNMPDR-DAVAWTAMISGLVQNELFVEATYLFME 322
           D+ +   +++  Y   G++ N   +F  M +R D V+W +MISG + NEL  +A  L   
Sbjct: 339 DDNAIENALLACYGKSGEMENCEEIFSRMSERRDEVSWNSMISGYIHNELLCKAMDLVWL 398

Query: 323 MRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGV 382
           M   G      TF+ +  A    A ++ G ++H   ++   ESD+++ + L+ MY+KCG 
Sbjct: 399 MMQRGQRLDCFTFATVLSACATVATLECGMEVHACAIRACLESDVVIGSALVDMYSKCGR 458

Query: 383 IDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSA 442
           ID A   F+ M  R+L SWNSM+ G++ HG  +  L++F  M  SG  P+ +TF+G+LSA
Sbjct: 459 IDYASRFFNLMPVRNLYSWNSMISGYARHGHGDNALRLFTRMKLSGQLPDHITFVGVLSA 518

Query: 443 CSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHR 502
           CSH GLV  G+E F +M +VY + P  EHY  M++LLGRAG++ + E F+ ++P +P+  
Sbjct: 519 CSHIGLVDEGFEYFKSMTEVYGLVPRVEHYSCMVDLLGRAGELDKIENFINKMPIKPNIL 578

Query: 503 IWGALLGACGFCEGN---AEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLR 559
           IW  +LGAC  C GN    E+   AA+ L  +DP NA  +V+L N+YA+ G+  +  + R
Sbjct: 579 IWRTVLGAC--CRGNGRKTELGRRAAEMLFNMDPQNAVNYVLLSNMYASGGKWEDMARTR 636

Query: 560 MDMGLKGVRKVPGCSWLMRNGGIQMFLSGD 589
             M    V+K  GCSW+    G+ +F++GD
Sbjct: 637 RAMREAAVKKEAGCSWVTMKDGVHVFVAGD 666



 Score =  115 bits (289), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 84/285 (29%), Positives = 140/285 (49%), Gaps = 16/285 (5%)

Query: 271 SMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPP 330
           ++I+ Y+ +G   +A  LF  MPDR+ V W  +ISG  QN +  +A  +  EM   G  P
Sbjct: 40  TLINVYVRIGDCVSARKLFDEMPDRNGVTWACLISGYTQNGMPEDACGVLKEMIFEGFLP 99

Query: 331 LNATF-SVLFGAAGATANIDLGRQIHCVLMKTE-SESDLILENCLISMYAKCGVIDNAYN 388
               F S +     +      GRQ+H   ++T  +++ + + N LI+MYAKCG ID+A +
Sbjct: 100 NRFAFGSAIRACQESMLWRRKGRQVHGYAIRTGLNDAKVAVGNGLINMYAKCGDIDHARS 159

Query: 389 IFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGL 448
           +F  MV +D VSWNSM+ G   +    + +K + SM ++G  P++   +  LS+C+  G 
Sbjct: 160 VFGLMVDKDSVSWNSMITGLDQNKCFEDAVKSYNSMRKTGLMPSNFALISALSSCASLGC 219

Query: 449 VSRGWELFNAMFDVYKIQPGPEHYVSMIN----LLGRAGKIKEAEEFVLRLPFEPDHRIW 504
           +  G +          I+ G +  VS+ N    L     ++ E ++ V     E D   W
Sbjct: 220 ILLGQQTHGE-----GIKLGLDMDVSVSNTLLALYAETSRLAECQK-VFSWMLERDQVSW 273

Query: 505 GALLGACGFCEGNAEIAEHAAKRLLELDPLN-APAHVVLCNIYAA 548
             ++GA    +  A ++E A +  LE+     +P  V   N+ A 
Sbjct: 274 NTVIGA--LADSGASVSE-AIEVFLEMMRAGWSPNRVTFINLLAT 315



 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 71/247 (28%), Positives = 114/247 (46%), Gaps = 36/247 (14%)

Query: 8   KSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEE 67
           +S VV  ++ +  YSK G ID A   F LMP RN+ S+N+M+SG+ ++G    A RLF  
Sbjct: 440 ESDVVIGSALVDMYSKCGRIDYASRFFNLMPVRNLYSWNSMISGYARHGHGDNALRLFTR 499

Query: 68  M------PERNVVSWTAMICGLADAGRVCEARKLFEEMPE-----RNVVSWNSMVVGLIR 116
           M      P+   +++  ++   +  G V E  + F+ M E       V  ++ MV  L R
Sbjct: 500 MKLSGQLPDH--ITFVGVLSACSHIGLVDEGFEYFKSMTEVYGLVPRVEHYSCMVDLLGR 557

Query: 117 NGELNEARKVFNSMPIK-NVISWNAMIAGYVECC--------MMGEAIVLFEEMEERNVV 167
            GEL++     N MPIK N++ W  ++     CC        +   A  +   M+ +N V
Sbjct: 558 AGELDKIENFINKMPIKPNILIWRTVLGA---CCRGNGRKTELGRRAAEMLFNMDPQNAV 614

Query: 168 TWTSMISGYCRAGEVEEGYCLFRRMPRKNVV------SWTAMIGG----FAWNGFHKESL 217
            +  + + Y   G+ E+     RR  R+  V      SW  M  G     A +  H E  
Sbjct: 615 NYVLLSNMYASGGKWED-MARTRRAMREAAVKKEAGCSWVTMKDGVHVFVAGDNSHPEKG 673

Query: 218 LLFIEMK 224
           L++ ++K
Sbjct: 674 LIYAKLK 680



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/161 (26%), Positives = 74/161 (45%), Gaps = 12/161 (7%)

Query: 354 IHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGL 413
            H  ++K   +SDL L N LI++Y + G   +A  +F  M  R+ V+W  ++ G++ +G+
Sbjct: 22  FHLNVLKHGFDSDLFLCNTLINVYVRIGDCVSARKLFDEMPDRNGVTWACLISGYTQNGM 81

Query: 414 ANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSR------GWELFNAMFDVYKIQP 467
             +   V + M+  G  PN   F   + AC  + L  R      G+ +   + D  K+  
Sbjct: 82  PEDACGVLKEMIFEGFLPNRFAFGSAIRACQESMLWRRKGRQVHGYAIRTGLNDA-KVAV 140

Query: 468 GPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALL 508
           G      +IN+  + G I  A   V  L  + D   W +++
Sbjct: 141 GN----GLINMYAKCGDIDHARS-VFGLMVDKDSVSWNSMI 176


>gi|297740913|emb|CBI31095.3| unnamed protein product [Vitis vinifera]
          Length = 768

 Score =  301 bits (772), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 192/683 (28%), Positives = 330/683 (48%), Gaps = 102/683 (14%)

Query: 7   PKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGR--------- 57
           PK  +    + +  Y K   +++A  LF  MP+RN+VS+N ++S   +NG          
Sbjct: 67  PKRDIYTWNAILGAYCKASELEDAHVLFAEMPERNIVSWNTLISALTRNGACGALVDVEC 126

Query: 58  --------------------------------LSEARRLFEEMPERNVVSWTAMICGLAD 85
                                           + +A + F ++PE N VS+TAM+ GLAD
Sbjct: 127 GRRCHGISIKIGLDNNIYVGNALLGMYAKCRCIGDAIQAFGDVPEPNEVSFTAMMGGLAD 186

Query: 86  AGRVCEARKLFEEMPERNVVSWNSM----VVGLIRNG----------------------- 118
           + +V EA +LF  M  RN +  +S+    V+G+   G                       
Sbjct: 187 SDQVNEAFRLFRLML-RNRIHVDSVSLSSVLGVCSRGGCGEFGLHDSNDVLSSDVHGQQV 245

Query: 119 ---------------------------ELNEARKVFNSMPIKNVISWNAMIAGYVECCMM 151
                                       ++ A  +F +MP  +V+SWN MIAGY +    
Sbjct: 246 HCLTIKHGFESDLHLNNSLLDMYAKNGNMDSAEMIFVNMPEVSVVSWNVMIAGYGQKSQS 305

Query: 152 GEAIVLFEEME----ERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGF 207
            +AI   + M+    E + +T+ +M+    ++G++E G  +F  M   ++ SW  ++ G+
Sbjct: 306 SKAIEYLQRMQYHGFEPDEITYVNMLVACIKSGDIEAGRQMFDGMSSPSLSSWNTILSGY 365

Query: 208 AWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEI 267
           + N  HKE++ LF EM+    + +   +    S + G +      +   +      R +I
Sbjct: 366 SQNENHKEAVKLFREMQFRSVHPDRTTLAIILSSLAGMMLLEGGRQVHAVSQKAVFRTDI 425

Query: 268 SWTS-MIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAH 326
              S +I  Y   G+V  A  +F  + + D V W +M++GL  N L  EA   F +MR  
Sbjct: 426 YLASGLIGMYSKCGKVEMAKRIFDRIAELDIVCWNSMMAGLSLNSLDKEAFTFFKKMREK 485

Query: 327 GVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNA 386
           G+ P   +++ +       +++  GRQ+H  + +    +D  + + LI MY+KCG +D A
Sbjct: 486 GMFPSQFSYATVLSCCAKLSSLSQGRQVHSQIAREGYMNDAFVGSALIDMYSKCGDVDAA 545

Query: 387 YNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHA 446
             +F  M+ ++ V+WN M+ G++ +G  +E + ++E M+ SG  P+ +TF+ +L+ACSH+
Sbjct: 546 RWVFDMMLGKNTVTWNEMIHGYAQNGCGDEAVLLYEDMIGSGEKPDGITFVAVLTACSHS 605

Query: 447 GLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGA 506
           GLV  G ++FN+M   + ++P  +HY  +I+ LGRAG++ EAE  + ++P + D  IW  
Sbjct: 606 GLVDTGIKIFNSMQQEHGVEPLVDHYTCIIDSLGRAGRLHEAEVLIDKMPCKYDPIIWEV 665

Query: 507 LLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKG 566
           LL +C     +  +A  AA+ L  LDP N+  +V+L NIY++ GR  +   +R  M    
Sbjct: 666 LLSSCRV-YADVSLARRAAEELFHLDPQNSAPYVLLANIYSSLGRWDDAKAVRELMSYNQ 724

Query: 567 VRKVPGCSWLMRNGGIQMFLSGD 589
           V K PG SW+    G+Q F+  D
Sbjct: 725 VVKDPGYSWIEHKNGMQAFMVDD 747



 Score =  209 bits (533), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 134/470 (28%), Positives = 227/470 (48%), Gaps = 60/470 (12%)

Query: 46  NAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVV 105
           N ++  + +   +  +RRLF++MP+R++ +W A++     A  + +A  LF EMPERN+V
Sbjct: 44  NRLIEFYAKCNAIDASRRLFDQMPKRDIYTWNAILGAYCKASELEDAHVLFAEMPERNIV 103

Query: 106 SWNSMVVGLIRNGELN-----EARKVFNSMPIK-----NVISWNAMIAGYVECCMMGEAI 155
           SWN+++  L RNG        E  +  + + IK     N+   NA++  Y +C  +G+AI
Sbjct: 104 SWNTLISALTRNGACGALVDVECGRRCHGISIKIGLDNNIYVGNALLGMYAKCRCIGDAI 163

Query: 156 VLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNV----VSWTAMI-----GG 206
             F ++ E N V++T+M+ G   + +V E + LFR M R  +    VS ++++     GG
Sbjct: 164 QAFGDVPEPNEVSFTAMMGGLADSDQVNEAFRLFRLMLRNRIHVDSVSLSSVLGVCSRGG 223

Query: 207 FAWNGFHKESLLLFIEMKG------ICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDT 260
               G H  + +L  ++ G         +G   ++   NS+++ Y + G ++ A+ +F  
Sbjct: 224 CGEFGLHDSNDVLSSDVHGQQVHCLTIKHGFESDLHLNNSLLDMYAKNGNMDSAEMIFVN 283

Query: 261 VPVRDEISWTSMIDGYLSVGQVSNA--------YY------------------------- 287
           +P    +SW  MI GY    Q S A        Y+                         
Sbjct: 284 MPEVSVVSWNVMIAGYGQKSQSSKAIEYLQRMQYHGFEPDEITYVNMLVACIKSGDIEAG 343

Query: 288 --LFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGAT 345
             +F  M      +W  ++SG  QNE   EA  LF EM+   V P   T +++  +    
Sbjct: 344 RQMFDGMSSPSLSSWNTILSGYSQNENHKEAVKLFREMQFRSVHPDRTTLAIILSSLAGM 403

Query: 346 ANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMV 405
             ++ GRQ+H V  K    +D+ L + LI MY+KCG ++ A  IF  +   D+V WNSM+
Sbjct: 404 MLLEGGRQVHAVSQKAVFRTDIYLASGLIGMYSKCGKVEMAKRIFDRIAELDIVCWNSMM 463

Query: 406 MGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWEL 455
            G S + L  E    F+ M E G  P+  ++  +LS C+    +S+G ++
Sbjct: 464 AGLSLNSLDKEAFTFFKKMREKGMFPSQFSYATVLSCCAKLSSLSQGRQV 513



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 69/271 (25%), Positives = 127/271 (46%), Gaps = 42/271 (15%)

Query: 239 NSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAV 298
           N +I  Y +   ++ ++ LFD +P RD  +W +++  Y    ++ +A+ LF  MP+R+ V
Sbjct: 44  NRLIEFYAKCNAIDASRRLFDQMPKRDIYTWNAILGAYCKASELEDAHVLFAEMPERNIV 103

Query: 299 AWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVL 358
           +W  +IS L +N                             GA GA  +++ GR+ H + 
Sbjct: 104 SWNTLISALTRN-----------------------------GACGALVDVECGRRCHGIS 134

Query: 359 MKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETL 418
           +K   ++++ + N L+ MYAKC  I +A   F ++   + VS+ +M+ G +     NE  
Sbjct: 135 IKIGLDNNIYVGNALLGMYAKCRCIGDAIQAFGDVPEPNEVSFTAMMGGLADSDQVNEAF 194

Query: 419 KVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMF--DVY-------KIQPGP 469
           ++F  ML +  H +SV+   +L  CS  G    G    N +   DV+        I+ G 
Sbjct: 195 RLFRLMLRNRIHVDSVSLSSVLGVCSRGGCGEFGLHDSNDVLSSDVHGQQVHCLTIKHGF 254

Query: 470 EHYV----SMINLLGRAGKIKEAEEFVLRLP 496
           E  +    S++++  + G +  AE   + +P
Sbjct: 255 ESDLHLNNSLLDMYAKNGNMDSAEMIFVNMP 285



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 56/226 (24%), Positives = 105/226 (46%), Gaps = 22/226 (9%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEM----PERNV 73
           I  YSK G +D A+ +F +M  +N V++N M+ G+ QNG   EA  L+E+M     + + 
Sbjct: 533 IDMYSKCGDVDAARWVFDMMLGKNTVTWNEMIHGYAQNGCGDEAVLLYEDMIGSGEKPDG 592

Query: 74  VSWTAMICGLADAGRVCEARKLFEEMPERN-----VVSWNSMVVGLIRNGELNEARKVFN 128
           +++ A++   + +G V    K+F  M + +     V  +  ++  L R G L+EA  + +
Sbjct: 593 ITFVAVLTACSHSGLVDTGIKIFNSMQQEHGVEPLVDHYTCIIDSLGRAGRLHEAEVLID 652

Query: 129 SMPIK-NVISWNAMIAG---YVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEE 184
            MP K + I W  +++    Y +  +   A      ++ +N   +  + + Y   G  ++
Sbjct: 653 KMPCKYDPIIWEVLLSSCRVYADVSLARRAAEELFHLDPQNSAPYVLLANIYSSLGRWDD 712

Query: 185 GYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNG 230
              +   M    VV       G++W   HK  +  F+    + DNG
Sbjct: 713 AKAVRELMSYNQVVKDP----GYSWIE-HKNGMQAFM----VDDNG 749



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 28/97 (28%), Positives = 48/97 (49%), Gaps = 4/97 (4%)

Query: 351 GRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSH 410
           G+ IH  ++++    D  L N LI  YAKC  ID +  +F  M  RD+ +WN+++  +  
Sbjct: 24  GKLIHAHMLRSRLSDDTFLSNRLIEFYAKCNAIDASRRLFDQMPKRDIYTWNAILGAYCK 83

Query: 411 HGLANETLKVFESMLESGTHPNSVTFLGILSACSHAG 447
                +   +F  M E     N V++  ++SA +  G
Sbjct: 84  ASELEDAHVLFAEMPER----NIVSWNTLISALTRNG 116


>gi|115444451|ref|NP_001046005.1| Os02g0167200 [Oryza sativa Japonica Group]
 gi|113535536|dbj|BAF07919.1| Os02g0167200, partial [Oryza sativa Japonica Group]
          Length = 526

 Score =  301 bits (772), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 165/508 (32%), Positives = 285/508 (56%), Gaps = 26/508 (5%)

Query: 108 NSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVE---CCMMGEAIVLFEEME-E 163
           NS++    +  E++EA KVF S+P   ++SWN +I G+ +   C    E + L +E   E
Sbjct: 12  NSLIDMYTKCVEMDEAVKVFESLPSVTIVSWNILITGFGQEGSCAKAVEVLSLMQEAGFE 71

Query: 164 RNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEM 223
            N VT++++++   +A +V     +F ++ R +V +W  ++ G+     H++++ LF  M
Sbjct: 72  PNEVTYSNLLASCIKARDVHSARAMFDKISRPSVTTWNTLLSGYCQEEQHQDTIELFRRM 131

Query: 224 KGICDNGNNCNVQ-----------SCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSM 272
           +       + NVQ           SC+ +  G + FGR   + ++   +   D    + +
Sbjct: 132 Q-------HQNVQPDRTTLAVILSSCSKL--GILDFGRQVHSASVRFLLH-NDMFVASGL 181

Query: 273 IDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLN 332
           +D Y   GQ+  A  +F+ M +RD V W ++ISGL  + L  EA   F +MR +G+ P  
Sbjct: 182 VDMYSKCGQIGIARSIFNKMTERDVVCWNSIISGLTIHSLNKEAFDFFKQMRENGIMPTE 241

Query: 333 ATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSN 392
           ++++ +  +    ++I  GRQIH  +MK   + ++ + + LI MYAKCG +D+A   F  
Sbjct: 242 SSYASMINSCSRLSSIPHGRQIHAQVMKDGYDQNVYVGSALIDMYAKCGNMDDARLFFDT 301

Query: 393 MVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRG 452
           M+ +++V+WN M+ G++ +GL ++ +++FE ML +   P++VTF+ +L+ CSH+GLV + 
Sbjct: 302 MMMKNIVAWNEMIHGYAQNGLGDKAVELFEYMLTTEQKPDAVTFIAVLTGCSHSGLVDKA 361

Query: 453 WELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACG 512
              FN+M + Y I P  EHY  +I+ LGRAG+  E E  + ++P + D  IW  LL AC 
Sbjct: 362 MAFFNSMENSYGIIPLAEHYTCLIDALGRAGRFVEVEALIHKMPCKDDPIIWEVLLAAC- 420

Query: 513 FCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPG 572
               NAE+ + AA+ L  +DP N   +V+L NIYA+ GRH +   +R  M  +GV K  G
Sbjct: 421 VVHHNAELGKCAAEHLFRIDPKNPSPYVLLSNIYASLGRHGDASAVRALMSNRGVVKGRG 480

Query: 573 CSWLMRNGGIQMFLSGDKIPAQVAEILL 600
            SW+ +  G++ F+  D + A   E+ +
Sbjct: 481 YSWIDQKDGVRAFMVADDLGADGGELTM 508



 Score =  119 bits (297), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 96/422 (22%), Positives = 188/422 (44%), Gaps = 59/422 (13%)

Query: 16  SSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPER---- 71
           S I  Y+K   +DEA  +F+ +P   +VS+N +++GF Q G  ++A  +   M E     
Sbjct: 13  SLIDMYTKCVEMDEAVKVFESLPSVTIVSWNILITGFGQEGSCAKAVEVLSLMQEAGFEP 72

Query: 72  NVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMP 131
           N V+++ ++     A  V  AR +F+++   +V +WN+++ G  +  +  +  ++F  M 
Sbjct: 73  NEVTYSNLLASCIKARDVHSARAMFDKISRPSVTTWNTLLSGYCQEEQHQDTIELFRRMQ 132

Query: 132 IKNVISWNAMIAGYVECC----------MMGEAIVLFEEMEERNVVTWTSMISGYCRAGE 181
            +NV      +A  +  C           +  A V F  +   ++   + ++  Y + G+
Sbjct: 133 HQNVQPDRTTLAVILSSCSKLGILDFGRQVHSASVRF--LLHNDMFVASGLVDMYSKCGQ 190

Query: 182 VEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMK----------------- 224
           +     +F +M  ++VV W ++I G   +  +KE+   F +M+                 
Sbjct: 191 IGIARSIFNKMTERDVVCWNSIISGLTIHSLNKEAFDFFKQMRENGIMPTESSYASMINS 250

Query: 225 ---------------GICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISW 269
                           +  +G + NV   +++I+ Y + G +++A+  FDT+ +++ ++W
Sbjct: 251 CSRLSSIPHGRQIHAQVMKDGYDQNVYVGSALIDMYAKCGNMDDARLFFDTMMMKNIVAW 310

Query: 270 TSMIDGYLSVGQVSNAYYLFHNM----PDRDAVAWTAMISGLVQNELFVEATYLFMEMR- 324
             MI GY   G    A  LF  M       DAV + A+++G   + L  +A   F  M  
Sbjct: 311 NEMIHGYAQNGLGDKAVELFEYMLTTEQKPDAVTFIAVLTGCSHSGLVDKAMAFFNSMEN 370

Query: 325 AHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVID 384
           ++G+ PL   ++ L  A G         ++  ++ K   + D I+   L+   A C V  
Sbjct: 371 SYGIIPLAEHYTCLIDALGRAGRF---VEVEALIHKMPCKDDPIIWEVLL---AACVVHH 424

Query: 385 NA 386
           NA
Sbjct: 425 NA 426



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 50/193 (25%), Positives = 91/193 (47%), Gaps = 14/193 (7%)

Query: 365 SDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESM 424
           SD  + N LI MY KC  +D A  +F ++ S  +VSWN ++ GF   G   + ++V   M
Sbjct: 6   SDQHVGNSLIDMYTKCVEMDEAVKVFESLPSVTIVSWNILITGFGQEGSCAKAVEVLSLM 65

Query: 425 LESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGK 484
            E+G  PN VT+  +L++C    + +R      AMFD    +P    + ++++   +  +
Sbjct: 66  QEAGFEPNEVTYSNLLASC----IKARDVHSARAMFDKIS-RPSVTTWNTLLSGYCQEEQ 120

Query: 485 IKEAEEFVLRLP---FEPDHRIWGALLGAC---GFCEGNAEIAEHAAKRLLELDPLNAPA 538
            ++  E   R+     +PD      +L +C   G  +   ++   + + LL  D   A  
Sbjct: 121 HQDTIELFRRMQHQNVQPDRTTLAVILSSCSKLGILDFGRQVHSASVRFLLHNDMFVASG 180

Query: 539 HVVLCNIYAASGR 551
              L ++Y+  G+
Sbjct: 181 ---LVDMYSKCGQ 190



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 41/194 (21%), Positives = 78/194 (40%), Gaps = 35/194 (18%)

Query: 265 DEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMR 324
           D+    S+ID Y    ++  A  +F ++P    V+W  +I+G  Q     +A  +   M+
Sbjct: 7   DQHVGNSLIDMYTKCVEMDEAVKVFESLPSVTIVSWNILITGFGQEGSCAKAVEVLSLMQ 66

Query: 325 AHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVID 384
             G  P   T+S L                              L +C+     K   + 
Sbjct: 67  EAGFEPNEVTYSNL------------------------------LASCI-----KARDVH 91

Query: 385 NAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACS 444
           +A  +F  +    + +WN+++ G+       +T+++F  M      P+  T   ILS+CS
Sbjct: 92  SARAMFDKISRPSVTTWNTLLSGYCQEEQHQDTIELFRRMQHQNVQPDRTTLAVILSSCS 151

Query: 445 HAGLVSRGWELFNA 458
             G++  G ++ +A
Sbjct: 152 KLGILDFGRQVHSA 165



 Score = 46.6 bits (109), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 48/195 (24%), Positives = 78/195 (40%), Gaps = 46/195 (23%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEM----PERNV 73
           I  Y+K G +D+A+  F  M  +N+V++N M+ G+ QNG   +A  LFE M     + + 
Sbjct: 283 IDMYAKCGNMDDARLFFDTMMMKNIVAWNEMIHGYAQNGLGDKAVELFEYMLTTEQKPDA 342

Query: 74  VSWTAMICG------------------------------------LADAGRVCEARKLFE 97
           V++ A++ G                                    L  AGR  E   L  
Sbjct: 343 VTFIAVLTGCSHSGLVDKAMAFFNSMENSYGIIPLAEHYTCLIDALGRAGRFVEVEALIH 402

Query: 98  EMP-ERNVVSWNSMVVGLI--RNGELNE--ARKVFNSMPIKNVISWNAMIAGYVECCMMG 152
           +MP + + + W  ++   +   N EL +  A  +F   P KN   +  +   Y      G
Sbjct: 403 KMPCKDDPIIWEVLLAACVVHHNAELGKCAAEHLFRIDP-KNPSPYVLLSNIYASLGRHG 461

Query: 153 EAIVLFEEMEERNVV 167
           +A  +   M  R VV
Sbjct: 462 DASAVRALMSNRGVV 476


>gi|449438554|ref|XP_004137053.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g21090-like [Cucumis sativus]
          Length = 611

 Score =  301 bits (772), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 180/560 (32%), Positives = 293/560 (52%), Gaps = 18/560 (3%)

Query: 55  NGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEE------------MPER 102
            GRL EA    + + +R V   T +     D  R+C   K F+                 
Sbjct: 40  QGRLPEALSYLDRLAQRGVRLPTGI---FVDLLRLCAKAKYFKGGKCVHLHLKHTGFKRP 96

Query: 103 NVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEME 162
             +  N ++      G   EARKVF+ M ++N+ SWN M+AGY +   +  A  LF+ M 
Sbjct: 97  TTIVANHLIGMYFECGRDVEARKVFDKMSVRNLYSWNHMLAGYAKLGDVNNARKLFDRMM 156

Query: 163 ERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIE 222
           E++VV+W +++  Y + G   E   L+R   R ++        G        + L L  +
Sbjct: 157 EKDVVSWNTIVLAYAKQGCFNEAIGLYRDFRRLDMGFNAFSFAGVLILCVKLKELQLAKQ 216

Query: 223 MKG-ICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQ 281
           + G +   G   N+   +S+++ Y + G +  A+ LFD + V+D  +WT+++ GY   G 
Sbjct: 217 VHGQVLVAGFLSNLVLSSSIVDAYAKCGEMRCARTLFDEMLVKDIHAWTTIVSGYAKWGD 276

Query: 282 VSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGA 341
           +++A  LFH MP+++ V+W+A+ISG  +N L  EA   F +M   G+ P   TFS    A
Sbjct: 277 MNSASELFHQMPEKNPVSWSALISGYARNSLGHEALDYFTKMMKFGINPEQYTFSSCLCA 336

Query: 342 AGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSR-DLVS 400
             + A +  G+Q+H  L++T    + I+ + LI MY+KCG+++ +  +F  M ++ D+V 
Sbjct: 337 CASIAALKHGKQVHGYLIRTYFRCNTIVVSSLIDMYSKCGMLEASCCVFHLMGNKQDVVV 396

Query: 401 WNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMF 460
           WN+M+   + +G   + +++F  M+ESG  P+ +TF+ ILSACSH+GLV  G   F AM 
Sbjct: 397 WNTMISALAQNGHGEKAMQMFNDMVESGLKPDRITFIVILSACSHSGLVQEGLRFFKAMT 456

Query: 461 DVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEI 520
             + + P  EHY  +I+LLGRAG   E    +  +  +PD R+W ALLG C     N E+
Sbjct: 457 YDHGVFPDQEHYSCLIDLLGRAGCFVELVNELENMSCKPDDRVWSALLGVCRI-HNNIEL 515

Query: 521 AEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNG 580
               A+R++EL P ++ A+V L ++YA  G+     K+R  M  K +RK  G SW+    
Sbjct: 516 GRKVAERVIELKPQSSAAYVSLASLYAFLGKWESVEKVRELMDEKFIRKERGISWIDVGN 575

Query: 581 GIQMFLSGDKIPAQVAEILL 600
               F++ D++     EI L
Sbjct: 576 KTHSFIASDRLHPLKEEIYL 595



 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 118/418 (28%), Positives = 196/418 (46%), Gaps = 28/418 (6%)

Query: 7   PKSLVV-HLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLF 65
           P ++V  HL   I  Y + G   EA+ +F  M  RN+ S+N ML+G+ + G ++ AR+LF
Sbjct: 96  PTTIVANHL---IGMYFECGRDVEARKVFDKMSVRNLYSWNHMLAGYAKLGDVNNARKLF 152

Query: 66  EEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPER----NVVSWNSMVVGLIRNGELN 121
           + M E++VVSW  ++   A  G   EA  L+ +        N  S+  +++  ++  EL 
Sbjct: 153 DRMMEKDVVSWNTIVLAYAKQGCFNEAIGLYRDFRRLDMGFNAFSFAGVLILCVKLKELQ 212

Query: 122 EARKVFNSMPI----KNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYC 177
            A++V   + +     N++  ++++  Y +C  M  A  LF+EM  +++  WT+++SGY 
Sbjct: 213 LAKQVHGQVLVAGFLSNLVLSSSIVDAYAKCGEMRCARTLFDEMLVKDIHAWTTIVSGYA 272

Query: 178 RAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQS 237
           + G++     LF +MP KN VSW+A+I G+A N    E+L  F +M     N       S
Sbjct: 273 KWGDMNSASELFHQMPEKNPVSWSALISGYARNSLGHEALDYFTKMMKFGINPEQYTFSS 332

Query: 238 CNSMINGYIRFGRLEEAQNLFDTVPVR-DEISWTSMIDGYLSVGQVSNAYYLFHNMPDR- 295
           C             ++          R + I  +S+ID Y   G +  +  +FH M ++ 
Sbjct: 333 CLCACASIAALKHGKQVHGYLIRTYFRCNTIVVSSLIDMYSKCGMLEASCCVFHLMGNKQ 392

Query: 296 DAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQI- 354
           D V W  MIS L QN    +A  +F +M   G+ P   TF V+  A   +  +  G +  
Sbjct: 393 DVVVWNTMISALAQNGHGEKAMQMFNDMVESGLKPDRITFIVILSACSHSGLVQEGLRFF 452

Query: 355 ------HCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSR-DLVSWNSMV 405
                 H V    E  S      CLI +  + G      N   NM  + D   W++++
Sbjct: 453 KAMTYDHGVFPDQEHYS------CLIDLLGRAGCFVELVNELENMSCKPDDRVWSALL 504


>gi|449530628|ref|XP_004172296.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g21090-like [Cucumis sativus]
          Length = 611

 Score =  301 bits (772), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 179/560 (31%), Positives = 293/560 (52%), Gaps = 18/560 (3%)

Query: 55  NGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEE------------MPER 102
            GRL EA    + + +R +   T +     D  R+C   K F+                 
Sbjct: 40  QGRLPEALSYLDRLAQRGIRLPTGI---FVDLLRLCAKAKYFKGGKCVHLHLKHTGFKRP 96

Query: 103 NVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEME 162
             +  N ++      G   EARKVF+ M ++N+ SWN M+AGY +   +  A  LF+ M 
Sbjct: 97  TTIVANHLIGMYFECGRDVEARKVFDKMSVRNLYSWNHMLAGYAKLGDVNNARKLFDRMM 156

Query: 163 ERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIE 222
           E++VV+W +++  Y + G   E   L+R   R ++        G        + L L  +
Sbjct: 157 EKDVVSWNTIVLAYAKQGCFNEAIGLYRDFRRLDMGFNAFSFAGVLILCVKLKELQLAKQ 216

Query: 223 MKG-ICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQ 281
           + G +   G   N+   +S+++ Y + G +  A+ LFD + V+D  +WT+++ GY   G 
Sbjct: 217 VHGQVLVAGFLSNLVLSSSIVDAYSKCGEMRCARTLFDEMLVKDIHAWTTIVSGYAKWGD 276

Query: 282 VSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGA 341
           +++A  LFH MP+++ V+W+A+ISG  +N L  EA   F +M   G+ P   TFS    A
Sbjct: 277 MNSASELFHQMPEKNPVSWSALISGYARNSLGHEALDYFTKMMKFGINPEQYTFSSCLCA 336

Query: 342 AGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSR-DLVS 400
             + A +  G+Q+H  L++T    + I+ + LI MY+KCG+++ +  +F  M ++ D+V 
Sbjct: 337 CASIAALKHGKQVHGYLIRTYFRCNTIVVSSLIDMYSKCGMLEASCCVFHLMGNKQDVVV 396

Query: 401 WNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMF 460
           WN+M+   + +G   + +++F  M+ESG  P+ +TF+ ILSACSH+GLV  G   F AM 
Sbjct: 397 WNTMISALAQNGHGEKAMQMFNDMVESGLKPDRITFIVILSACSHSGLVQEGLRFFKAMT 456

Query: 461 DVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEI 520
             + + P  EHY  +I+LLGRAG   E    +  +  +PD R+W ALLG C     N E+
Sbjct: 457 YDHGVFPDQEHYACLIDLLGRAGCFVELVNELENMSCKPDDRVWSALLGVCRI-HNNIEL 515

Query: 521 AEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNG 580
               A+R++EL P ++ A+V L ++YA  G+     K+R  M  K +RK  G SW+    
Sbjct: 516 GRKVAERVIELKPQSSAAYVSLASLYAFLGKWESVEKVRELMDEKFIRKERGISWIDVGN 575

Query: 581 GIQMFLSGDKIPAQVAEILL 600
               F++ D++     EI L
Sbjct: 576 KTHSFIASDRLHPLKEEIYL 595



 Score =  155 bits (391), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 117/418 (27%), Positives = 196/418 (46%), Gaps = 28/418 (6%)

Query: 7   PKSLVV-HLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLF 65
           P ++V  HL   I  Y + G   EA+ +F  M  RN+ S+N ML+G+ + G ++ AR+LF
Sbjct: 96  PTTIVANHL---IGMYFECGRDVEARKVFDKMSVRNLYSWNHMLAGYAKLGDVNNARKLF 152

Query: 66  EEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPER----NVVSWNSMVVGLIRNGELN 121
           + M E++VVSW  ++   A  G   EA  L+ +        N  S+  +++  ++  EL 
Sbjct: 153 DRMMEKDVVSWNTIVLAYAKQGCFNEAIGLYRDFRRLDMGFNAFSFAGVLILCVKLKELQ 212

Query: 122 EARKVFNSMPI----KNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYC 177
            A++V   + +     N++  ++++  Y +C  M  A  LF+EM  +++  WT+++SGY 
Sbjct: 213 LAKQVHGQVLVAGFLSNLVLSSSIVDAYSKCGEMRCARTLFDEMLVKDIHAWTTIVSGYA 272

Query: 178 RAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQS 237
           + G++     LF +MP KN VSW+A+I G+A N    E+L  F +M     N       S
Sbjct: 273 KWGDMNSASELFHQMPEKNPVSWSALISGYARNSLGHEALDYFTKMMKFGINPEQYTFSS 332

Query: 238 CNSMINGYIRFGRLEEAQNLFDTVPVR-DEISWTSMIDGYLSVGQVSNAYYLFHNMPDR- 295
           C             ++          R + I  +S+ID Y   G +  +  +FH M ++ 
Sbjct: 333 CLCACASIAALKHGKQVHGYLIRTYFRCNTIVVSSLIDMYSKCGMLEASCCVFHLMGNKQ 392

Query: 296 DAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQI- 354
           D V W  MIS L QN    +A  +F +M   G+ P   TF V+  A   +  +  G +  
Sbjct: 393 DVVVWNTMISALAQNGHGEKAMQMFNDMVESGLKPDRITFIVILSACSHSGLVQEGLRFF 452

Query: 355 ------HCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSR-DLVSWNSMV 405
                 H V    E  +      CLI +  + G      N   NM  + D   W++++
Sbjct: 453 KAMTYDHGVFPDQEHYA------CLIDLLGRAGCFVELVNELENMSCKPDDRVWSALL 504


>gi|449445027|ref|XP_004140275.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
          Length = 833

 Score =  301 bits (772), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 191/624 (30%), Positives = 314/624 (50%), Gaps = 60/624 (9%)

Query: 21  YSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLF--------------- 65
           Y   GF+++A+ LF  MP+R+VVS+N ++     NG  +EAR  +               
Sbjct: 204 YGNCGFLNDARRLFDEMPERDVVSWNTIIGLLSVNGDYTEARNYYFWMILRSVIKPNLVS 263

Query: 66  -------------EEMPER------------NVVSWTAMICGLADAGRVCEARKLFEEMP 100
                        EEM  R             V +  A++      G V    ++F E  
Sbjct: 264 VISLLPISAALEDEEMTRRIHCYSVKVGLDSQVTTCNALVDAYGKCGSVKALWQVFNETV 323

Query: 101 ERNVVSWNSMVVGLIRNGE----LNEARKVFNSMPIKNVISWNAMIAGYVE--CCMMGEA 154
           E+N VSWNS++ GL   G     LN  R + ++    N ++ ++++   VE  C   G+ 
Sbjct: 324 EKNEVSWNSIINGLACKGRCWDALNAFRMMIDAGAQPNSVTISSILPVLVELECFKAGKE 383

Query: 155 IVLFEEM--EERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGF 212
           I  F      E ++    S+I  Y ++G   E   +F  + R+N+VSW AMI  +A N  
Sbjct: 384 IHGFSMRMGTETDIFIANSLIDMYAKSGHSTEASTIFHNLDRRNIVSWNAMIANYALNRL 443

Query: 213 HKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVR-----DEI 267
             E++   I+M+   + G   N  +  +++    R G L   + +   + VR     D  
Sbjct: 444 PLEAIRFVIQMQ---ETGECPNAVTFTNVLPACARLGFLGPGKEI-HAMGVRIGLTSDLF 499

Query: 268 SWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHG 327
              S+ID Y   G + +A  +F N   +D V++  +I G  + +  +++  LF EMR  G
Sbjct: 500 VSNSLIDMYAKCGCLHSARNVF-NTSRKDEVSYNILIIGYSETDDCLQSLNLFSEMRLLG 558

Query: 328 VPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAY 387
             P   +F  +  A    A +  G+++H V ++    S L + N L+  Y KCG ID A 
Sbjct: 559 KKPDVVSFVGVISACANLAALKQGKEVHGVALRNHLYSHLFVSNSLLDFYTKCGRIDIAC 618

Query: 388 NIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAG 447
            +F+ ++ +D+ SWN+M++G+   G     + +FE+M +     + V+++ +LSACSH G
Sbjct: 619 RLFNQILFKDVASWNTMILGYGMIGELETAISMFEAMRDDTVQYDLVSYIAVLSACSHGG 678

Query: 448 LVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGAL 507
           LV RGW+ F+ M    +++P   HY  M++LLGRAG ++EA + + +LP  PD  IWGAL
Sbjct: 679 LVERGWQYFSEML-AQRLEPTEMHYTCMVDLLGRAGFVEEAAKLIQQLPIAPDANIWGAL 737

Query: 508 LGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGV 567
           LGAC    GN E+   AA+ L EL P +   +++L NIYA +GR  E +K+R  M  +G 
Sbjct: 738 LGACRI-YGNVELGRRAAEHLFELKPQHCGYYILLSNIYAETGRWDEANKIRELMKSRGA 796

Query: 568 RKVPGCSWLMRNGGIQMFLSGDKI 591
           +K PGCSW+     +  F++ +++
Sbjct: 797 KKNPGCSWVQIYDQVHAFVAEERV 820



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 60/249 (24%), Positives = 109/249 (43%), Gaps = 22/249 (8%)

Query: 287 YLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATA 346
           +L++ +    ++AW     G          TY  M  R  GV   + TF  +      + 
Sbjct: 124 FLWNTLIRAHSIAWNGTFDGF--------ETYNRMVRR--GVQLDDHTFPFVLKLCSDSF 173

Query: 347 NIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVM 406
           +I  G ++H V+ K   ++D+ + N L+ +Y  CG +++A  +F  M  RD+VSWN+++ 
Sbjct: 174 DICKGMEVHGVVFKLGFDTDVYVGNTLLMLYGNCGFLNDARRLFDEMPERDVVSWNTIIG 233

Query: 407 GFSHHGLANETLK-VFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKI 465
             S +G   E     F  +L S   PN V+ + +L     A L     E        Y +
Sbjct: 234 LLSVNGDYTEARNYYFWMILRSVIKPNLVSVISLLPI--SAALED---EEMTRRIHCYSV 288

Query: 466 QPGPEHYVSMINLL----GRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIA 521
           + G +  V+  N L    G+ G +K   + V     E +   W +++     C+G    A
Sbjct: 289 KVGLDSQVTTCNALVDAYGKCGSVKALWQ-VFNETVEKNEVSWNSIINGLA-CKGRCWDA 346

Query: 522 EHAAKRLLE 530
            +A + +++
Sbjct: 347 LNAFRMMID 355



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 45/150 (30%), Positives = 71/150 (47%), Gaps = 9/150 (6%)

Query: 4   RNHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARR 63
           RNH  S +    S +  Y+K G ID A  LF  +  ++V S+N M+ G+   G L  A  
Sbjct: 591 RNHLYSHLFVSNSLLDFYTKCGRIDIACRLFNQILFKDVASWNTMILGYGMIGELETAIS 650

Query: 64  LFEEMPERNV----VSWTAMICGLADAGRVCEARKLFEEMPERNV----VSWNSMVVGLI 115
           +FE M +  V    VS+ A++   +  G V    + F EM  + +    + +  MV  L 
Sbjct: 651 MFEAMRDDTVQYDLVSYIAVLSACSHGGLVERGWQYFSEMLAQRLEPTEMHYTCMVDLLG 710

Query: 116 RNGELNEARKVFNSMPIK-NVISWNAMIAG 144
           R G + EA K+   +PI  +   W A++  
Sbjct: 711 RAGFVEEAAKLIQQLPIAPDANIWGALLGA 740


>gi|302822699|ref|XP_002993006.1| hypothetical protein SELMODRAFT_136306 [Selaginella moellendorffii]
 gi|300139206|gb|EFJ05952.1| hypothetical protein SELMODRAFT_136306 [Selaginella moellendorffii]
          Length = 579

 Score =  301 bits (772), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 180/579 (31%), Positives = 289/579 (49%), Gaps = 57/579 (9%)

Query: 8   KSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSE-ARRLFE 66
           K  +    + ++ Y++ G +D AK+LF  MP R+VVS+ A+L  F+  G ++  A ++ +
Sbjct: 20  KPSICSWNTMVSAYAQCGHVDLAKSLFDTMPHRDVVSWTALLHAFV--GSITTMAHQVLD 77

Query: 67  EMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKV 126
            MP+ NVV+WT MI    D G +  A+ +F  MPERNVVSWN+MV    + G+   A+  
Sbjct: 78  RMPQLNVVTWTTMIQACVDQGHLGPAKDIFTRMPERNVVSWNTMVAANFQLGDFAGAKST 137

Query: 127 FNSMP---------------------------------IKNVISWNAMIAGYVECCMMGE 153
           FN MP                                 ++++++WNAMI  +  C  + +
Sbjct: 138 FNRMPKHDVVSWNAVVSAHAHGREGMIEQALAAFGSYHVRDLVTWNAMIQAFAHCGHLDQ 197

Query: 154 AIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNG-F 212
           A   FE M ER+ V+W +MI  Y   G VEE   LFRRMP  N+++WT+++  FA NG  
Sbjct: 198 AKEYFERMPERDCVSWNTMIQAYANDGCVEEANRLFRRMPEPNLLTWTSLLVAFAQNGNV 257

Query: 213 HKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSM 272
                + F  M          +  +CN+M+  Y   G L  A  +FD++  R   SW S+
Sbjct: 258 AGAETIFFARMP-------EWDAVACNAMVALYADAGCLARAAAMFDSLKERSMASWNSI 310

Query: 273 IDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLN 332
           +  +   G+   A  +F  MP  D V+W  +++  + +        LF  +    V   N
Sbjct: 311 VQAHAQNGEYEGAKEMFDRMPCHDMVSWNTLLAAAIHSGSIDLVERLFDALPEPDVVSCN 370

Query: 333 ATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSN 392
               V F   G     +        L +  SE +++  N +++ YA+CG ++ A  ++S 
Sbjct: 371 IVI-VTFAEQGLIEKAER-------LFRRMSEWNIVTVNAMVAAYAQCGRMEQAKELWSK 422

Query: 393 MVSRDLVSWNSMVMGFSHH---GLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLV 449
           M  +++VSWN++V G+      G  ++  ++  SM      PN V+FL IL+AC+H GL+
Sbjct: 423 MPEQNVVSWNALVAGYGQKRNFGHYSDAFELLHSMGLESVLPNDVSFLIILNACAHKGLL 482

Query: 450 SRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLG 509
                   AM D + ++P  EHY   I++ G+ G+++ A E    +PF+ D   WG+L G
Sbjct: 483 REARSYLAAMAD-HGLKPCIEHYCIFIDVFGKVGQLENASELAGCMPFQGDGVSWGSLAG 541

Query: 510 ACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAA 548
           ACG    +      AAK   E+ P +A ++V L N+YAA
Sbjct: 542 ACGL-HRSVRHGAGAAKLACEMAPKSAASYVSLANLYAA 579



 Score =  187 bits (476), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 119/406 (29%), Positives = 208/406 (51%), Gaps = 16/406 (3%)

Query: 7   PKSLVVHLTSSITKYS--KRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRL 64
           PK  VV   + ++ ++  + G I++A A F     R++V++NAM+  F   G L +A+  
Sbjct: 142 PKHDVVSWNAVVSAHAHGREGMIEQALAAFGSYHVRDLVTWNAMIQAFAHCGHLDQAKEY 201

Query: 65  FEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEAR 124
           FE MPER+ VSW  MI   A+ G V EA +LF  MPE N+++W S++V   +NG +  A 
Sbjct: 202 FERMPERDCVSWNTMIQAYANDGCVEEANRLFRRMPEPNLLTWTSLLVAFAQNGNVAGAE 261

Query: 125 KVFNS-MPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVE 183
            +F + MP  + ++ NAM+A Y +   +  A  +F+ ++ER++ +W S++  + + GE E
Sbjct: 262 TIFFARMPEWDAVACNAMVALYADAGCLARAAAMFDSLKERSMASWNSIVQAHAQNGEYE 321

Query: 184 EGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMIN 243
               +F RMP  ++VSW  ++        H  S+ L   ++ + D     +V SCN +I 
Sbjct: 322 GAKEMFDRMPCHDMVSWNTLLAA----AIHSGSIDL---VERLFDALPEPDVVSCNIVIV 374

Query: 244 GYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAM 303
            +   G +E+A+ LF  +   + ++  +M+  Y   G++  A  L+  MP+++ V+W A+
Sbjct: 375 TFAEQGLIEKAERLFRRMSEWNIVTVNAMVAAYAQCGRMEQAKELWSKMPEQNVVSWNAL 434

Query: 304 ISGLVQNELF---VEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMK 360
           ++G  Q   F    +A  L   M    V P + +F ++  A      +   R  +   M 
Sbjct: 435 VAGYGQKRNFGHYSDAFELLHSMGLESVLPNDVSFLIILNACAHKGLLREARS-YLAAMA 493

Query: 361 TESESDLILENCL-ISMYAKCGVIDNAYNIFSNM-VSRDLVSWNSM 404
                  I   C+ I ++ K G ++NA  +   M    D VSW S+
Sbjct: 494 DHGLKPCIEHYCIFIDVFGKVGQLENASELAGCMPFQGDGVSWGSL 539



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 108/429 (25%), Positives = 176/429 (41%), Gaps = 87/429 (20%)

Query: 145 YVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMI 204
           Y  C  + +A ++FE + + ++ +W +M+S Y + G V+    LF  MP ++VVSWTA++
Sbjct: 2   YSSCGSIRDAQIVFEGICKPSICSWNTMVSAYAQCGHVDLAKSLFDTMPHRDVVSWTALL 61

Query: 205 GGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVR 264
             F  +        +      + D     NV +  +MI   +  G L  A+++F  +P R
Sbjct: 62  HAFVGS--------ITTMAHQVLDRMPQLNVVTWTTMIQACVDQGHLGPAKDIFTRMPER 113

Query: 265 DEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMR 324
           + +SW +M+     +G  + A   F+ MP  D V+W A++S                   
Sbjct: 114 NVVSWNTMVAANFQLGDFAGAKSTFNRMPKHDVVSWNAVVSA-----------------H 156

Query: 325 AHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVID 384
           AHG   +       FG                    +    DL+  N +I  +A CG +D
Sbjct: 157 AHGREGMIEQALAAFG--------------------SYHVRDLVTWNAMIQAFAHCGHLD 196

Query: 385 NAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACS 444
            A   F  M  RD VSWN+M+  +++ G   E  ++F  M E    PN +T+  +L A +
Sbjct: 197 QAKEYFERMPERDCVSWNTMIQAYANDGCVEEANRLFRRMPE----PNLLTWTSLLVAFA 252

Query: 445 HAGLVSRGWELF----------------------------NAMFDVYKIQPGPEHYVSMI 476
             G V+    +F                             AMFD  K +     + S++
Sbjct: 253 QNGNVAGAETIFFARMPEWDAVACNAMVALYADAGCLARAAAMFDSLK-ERSMASWNSIV 311

Query: 477 NLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNA 536
               + G+ + A+E   R+P   D   W  LL A     G+ ++ E     L E D    
Sbjct: 312 QAHAQNGEYEGAKEMFDRMPCH-DMVSWNTLLAA-AIHSGSIDLVERLFDALPEPD---- 365

Query: 537 PAHVVLCNI 545
              VV CNI
Sbjct: 366 ---VVSCNI 371


>gi|357464703|ref|XP_003602633.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355491681|gb|AES72884.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 647

 Score =  301 bits (772), Expect = 6e-79,   Method: Compositional matrix adjust.
 Identities = 175/519 (33%), Positives = 281/519 (54%), Gaps = 46/519 (8%)

Query: 125 KVFNSMPIKNVISW-----NAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRA 179
           K  +S  IK  + +     N +I  Y +C         F+++  +   TW +++S Y + 
Sbjct: 98  KALHSQLIKTALFFETFLANGLIDLYSKCGCKESIHKAFDDLPNKTTRTWNTLLSFYSKK 157

Query: 180 GEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKG-----------ICD 228
           G   + Y LF  MP++N+VS+ ++I G   + FHKE++  F EM+            +  
Sbjct: 158 GVFNQAYKLFDEMPQRNLVSYNSLISGLTRHEFHKEAVKFFREMQNGVGGLMLDEFTLVS 217

Query: 229 NGNNC-----------------------NVQSCNSMINGYIRFGRLEEAQNLFDTVPVRD 265
             +NC                       N+   N++I+ Y + G    +  LF ++  +D
Sbjct: 218 LVSNCSCLDTVKWLRQVHGVATIVGFRTNLILNNALIDAYGKCGEPNSSFCLFRSMVEKD 277

Query: 266 EISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRA 325
            +SWTSM+  Y    ++ +A  +F+ MP +  V+W A+ISG V+N    EA  +F +M  
Sbjct: 278 AVSWTSMVVTYTRASRIDDACKVFNEMPVKYTVSWAALISGFVKNGRCYEALEVFHQMIK 337

Query: 326 HGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLI---LENCLISMYAKCGV 382
            GV P   TF  +  A  + A I  G+Q+HC +++  S  +L    + N L+ MYAKCG 
Sbjct: 338 EGVLPRAQTFVSVLDACASEALIGRGKQVHCQIIRGRSSDNLFNVYVFNALMDMYAKCGD 397

Query: 383 IDNAYNIFSNMVS-RDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILS 441
           + +A N+F  M+  +D+VSWN+++ GF+ +G   ++L VF+ M+ES   PN VTFLG+LS
Sbjct: 398 MKSAENLFEMMIHVKDVVSWNTLITGFAQNGRGEDSLAVFDRMIESNIEPNHVTFLGVLS 457

Query: 442 ACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDH 501
           AC+HAGLV+ G EL ++M   Y ++P   HY  +I+LLGR  +++EA   + ++P E  +
Sbjct: 458 ACNHAGLVNAGLELLDSMERRYGVKPKSNHYALLIDLLGRKNRLEEAMCLIEKVPNEISN 517

Query: 502 RI--WGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLR 559
            I  WGA+LG C    GN E+A  AA+ L  L+P N   +V+L NIYAASGR  + +++R
Sbjct: 518 HIAMWGAVLGGCR-VHGNLELARKAAEALFALEPENTGRYVMLSNIYAASGRWSDTNRIR 576

Query: 560 MDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
             M  +G++K P  S +        F++ DK   Q+ EI
Sbjct: 577 NVMKERGLKKEPAFSRIELKESRHEFVAKDKFHPQIGEI 615



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 109/398 (27%), Positives = 182/398 (45%), Gaps = 54/398 (13%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWT 77
           I  YSK G  +     F  +P +   ++N +LS + + G  ++A +LF+EMP+RN+VS+ 
Sbjct: 120 IDLYSKCGCKESIHKAFDDLPNKTTRTWNTLLSFYSKKGVFNQAYKLFDEMPQRNLVSYN 179

Query: 78  AMICGLADAGRVCEARKLFEEM---------PERNVVSWNSMVVGLIRNGELNEARKVFN 128
           ++I GL       EA K F EM          E  +VS  S    L     L +   V  
Sbjct: 180 SLISGLTRHEFHKEAVKFFREMQNGVGGLMLDEFTLVSLVSNCSCLDTVKWLRQVHGVAT 239

Query: 129 SMPIK-NVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYC 187
            +  + N+I  NA+I  Y +C     +  LF  M E++ V+WTSM+  Y RA  +++   
Sbjct: 240 IVGFRTNLILNNALIDAYGKCGEPNSSFCLFRSMVEKDAVSWTSMVVTYTRASRIDDACK 299

Query: 188 LFRRMPRKNVVSWTAMIGGFAWNG--------FH---KESLL----LFIEMKGIC----- 227
           +F  MP K  VSW A+I GF  NG        FH   KE +L     F+ +   C     
Sbjct: 300 VFNEMPVKYTVSWAALISGFVKNGRCYEALEVFHQMIKEGVLPRAQTFVSVLDACASEAL 359

Query: 228 ---------------DNGNNCNVQSCNSMINGYIRFGRLEEAQNLFD-TVPVRDEISWTS 271
                           + N  NV   N++++ Y + G ++ A+NLF+  + V+D +SW +
Sbjct: 360 IGRGKQVHCQIIRGRSSDNLFNVYVFNALMDMYAKCGDMKSAENLFEMMIHVKDVVSWNT 419

Query: 272 MIDGYLSVGQVSNAYYLFHNMPDRDA----VAWTAMISGLVQNELFVEATYLFMEM-RAH 326
           +I G+   G+  ++  +F  M + +     V +  ++S      L      L   M R +
Sbjct: 420 LITGFAQNGRGEDSLAVFDRMIESNIEPNHVTFLGVLSACNHAGLVNAGLELLDSMERRY 479

Query: 327 GVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESE 364
           GV P +  +++L    G    ++   +  C++ K  +E
Sbjct: 480 GVKPKSNHYALLIDLLGRKNRLE---EAMCLIEKVPNE 514



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 77/282 (27%), Positives = 136/282 (48%), Gaps = 31/282 (10%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWT 77
           I  Y K G  + +  LF+ M +++ VS+ +M+  + +  R+ +A ++F EMP +  VSW 
Sbjct: 254 IDAYGKCGEPNSSFCLFRSMVEKDAVSWTSMVVTYTRASRIDDACKVFNEMPVKYTVSWA 313

Query: 78  AMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLI----RNGELNEARKVF------ 127
           A+I G    GR  EA ++F +M +  V+      V ++        +   ++V       
Sbjct: 314 ALISGFVKNGRCYEALEVFHQMIKEGVLPRAQTFVSVLDACASEALIGRGKQVHCQIIRG 373

Query: 128 -NSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEM-EERNVVTWTSMISGYCRAGEVEEG 185
            +S  + NV  +NA++  Y +C  M  A  LFE M   ++VV+W ++I+G+ + G  E+ 
Sbjct: 374 RSSDNLFNVYVFNALMDMYAKCGDMKSAENLFEMMIHVKDVVSWNTLITGFAQNGRGEDS 433

Query: 186 YCLFRRMPRKNV----VSWTAMIGGFAWNGFHKESLLLFIEMK---GICDNGNNCNVQSC 238
             +F RM   N+    V++  ++      G     L L   M+   G+    N+  +   
Sbjct: 434 LAVFDRMIESNIEPNHVTFLGVLSACNHAGLVNAGLELLDSMERRYGVKPKSNHYAL--- 490

Query: 239 NSMINGYIRFGRLEEAQNLFDTVPVRDEIS-----WTSMIDG 275
             +I+   R  RLEEA  L + VP  +EIS     W +++ G
Sbjct: 491 --LIDLLGRKNRLEEAMCLIEKVP--NEISNHIAMWGAVLGG 528



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 65/255 (25%), Positives = 109/255 (42%), Gaps = 55/255 (21%)

Query: 12  VHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPER 71
           V  TS +  Y++   ID+A  +F  MP +  VS+ A++SGF++NGR  EA  +F +M + 
Sbjct: 279 VSWTSMVVTYTRASRIDDACKVFNEMPVKYTVSWAALISGFVKNGRCYEALEVFHQMIKE 338

Query: 72  ------------------------------------------NVVSWTAMICGLADAGRV 89
                                                     NV  + A++   A  G +
Sbjct: 339 GVLPRAQTFVSVLDACASEALIGRGKQVHCQIIRGRSSDNLFNVYVFNALMDMYAKCGDM 398

Query: 90  CEARKLFEEMPE-RNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVEC 148
             A  LFE M   ++VVSWN+++ G  +NG   ++  VF+ M   N+   +    G +  
Sbjct: 399 KSAENLFEMMIHVKDVVSWNTLITGFAQNGRGEDSLAVFDRMIESNIEPNHVTFLGVLSA 458

Query: 149 C----MMGEAIVLFEEMEERNVVTWTS-----MISGYCRAGEVEEGYCLFRRMPRK---N 196
           C    ++   + L + ME R  V   S     +I    R   +EE  CL  ++P +   +
Sbjct: 459 CNHAGLVNAGLELLDSMERRYGVKPKSNHYALLIDLLGRKNRLEEAMCLIEKVPNEISNH 518

Query: 197 VVSWTAMIGGFAWNG 211
           +  W A++GG   +G
Sbjct: 519 IAMWGAVLGGCRVHG 533



 Score = 55.5 bits (132), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 38/143 (26%), Positives = 59/143 (41%), Gaps = 33/143 (23%)

Query: 335 FSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKC-------------- 380
           FS L     +  ++  G+ +H  L+KT    +  L N LI +Y+KC              
Sbjct: 81  FSSLISNCVSAKSLKHGKALHSQLIKTALFFETFLANGLIDLYSKCGCKESIHKAFDDLP 140

Query: 381 -----------------GVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFES 423
                            GV + AY +F  M  R+LVS+NS++ G + H    E +K F  
Sbjct: 141 NKTTRTWNTLLSFYSKKGVFNQAYKLFDEMPQRNLVSYNSLISGLTRHEFHKEAVKFFRE 200

Query: 424 MLE--SGTHPNSVTFLGILSACS 444
           M     G   +  T + ++S CS
Sbjct: 201 MQNGVGGLMLDEFTLVSLVSNCS 223


>gi|359480813|ref|XP_002277337.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39350-like [Vitis vinifera]
          Length = 634

 Score =  301 bits (772), Expect = 6e-79,   Method: Compositional matrix adjust.
 Identities = 191/581 (32%), Positives = 310/581 (53%), Gaps = 25/581 (4%)

Query: 14  LTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEM----- 68
           LT  +  Y+  G +  A+ALF  + Q NV ++ A+L  + +NG   E  R + EM     
Sbjct: 61  LTKLVQMYADCGDLGSAQALFDKLSQPNVFAWTAILGFYSRNGLSDECVRTYSEMKLKGV 120

Query: 69  -PERNVVSWTAMICG--LADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARK 125
            P++ V       CG  L     +   + +     E ++   NS++    ++G++   R+
Sbjct: 121 LPDKYVFPKVFRACGQLLWLEVGIQVHKDVVICGCEFDLQVCNSLIDMYSKSGDVGSGRR 180

Query: 126 VFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEME----ERNVVTWTSMISGYCRAGE 181
           VF+ M  ++V+SWN+MI+GYV    +  ++ L   M     E ++VTW +++  YCR G 
Sbjct: 181 VFDEMVERDVLSWNSMISGYVCNGFLEFSVELLASMRIRGFEPDMVTWNTVMDAYCRMGL 240

Query: 182 VEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSM 241
            +E + +F ++   N++S T ++ G++  G H++SL +F EM  +       ++ S +S+
Sbjct: 241 CDEAWEIFEQIKEPNIISLTTLVSGYSRIGNHEKSLGIFREM--MSRRVAFPDLDSLSSV 298

Query: 242 INGYIRFGRLEEAQNLFDT-VPVRDEISW-----TSMIDGYLSVGQVSNAYYLFHNMPDR 295
           +      G L   Q +    +   D  S+      +++  Y+   ++ +A  +F  M   
Sbjct: 299 LVSCRHLGALVCGQEIHGYGIRSVDSSSFYKSAGAALLTMYVKCKRIQDALNVFELMDRF 358

Query: 296 DAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIH 355
           D V W AMI G V  E+   A   F +M+  G+     T S +  A     ++  G+Q+H
Sbjct: 359 DVVTWNAMILGFVDLEMGHLALECFSKMQRSGIMNNQITISTVLPAC----DLKSGKQVH 414

Query: 356 CVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLAN 415
             + K    S + + N LI MY+KCG I  AY+IFSNM+SRDLVSWN+M+ GF  HGL  
Sbjct: 415 AYITKNSFSSVIPVWNALIHMYSKCGCIGTAYSIFSNMISRDLVSWNTMIGGFGMHGLGQ 474

Query: 416 ETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSM 475
             L++   M  S   PNSVTF   LSACSH+GLV  G ELF+ M   +   PG EH+  +
Sbjct: 475 FALQLLRDMSHSDVCPNSVTFTSALSACSHSGLVDEGMELFHTMTRDFGFTPGMEHFSCV 534

Query: 476 INLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLN 535
           ++LL RA ++++A  F+ ++P +P   IW ALL AC   + N  +A+ AA++L +L+P +
Sbjct: 535 VDLLARADRLEDAVGFIEKMPLKPSKHIWSALLAACR-AQQNVSVAKLAAEQLFQLEPEH 593

Query: 536 APAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWL 576
           A  +V L NIYA +GR  +   +R  M  +G+ K  G SW+
Sbjct: 594 AGNYVTLSNIYARAGRWDDAVAVRKLMEDRGLVKPSGYSWI 634



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 55/222 (24%), Positives = 99/222 (44%), Gaps = 23/222 (10%)

Query: 4   RNHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARR 63
           +N   S++    + I  YSK G I  A ++F  M  R++VS+N M+ GF  +G    A +
Sbjct: 419 KNSFSSVIPVWNALIHMYSKCGCIGTAYSIFSNMISRDLVSWNTMIGGFGMHGLGQFALQ 478

Query: 64  LFEEMPERNV----VSWTAMICGLADAGRVCEARKLFEEMPER-----NVVSWNSMVVGL 114
           L  +M   +V    V++T+ +   + +G V E  +LF  M         +  ++ +V  L
Sbjct: 479 LLRDMSHSDVCPNSVTFTSALSACSHSGLVDEGMELFHTMTRDFGFTPGMEHFSCVVDLL 538

Query: 115 IRNGELNEARKVFNSMPIKNVIS-WNAMIAG------YVECCMMGEAIVLFEEMEERNVV 167
            R   L +A      MP+K     W+A++A            +  E +   E     N V
Sbjct: 539 ARADRLEDAVGFIEKMPLKPSKHIWSALLAACRAQQNVSVAKLAAEQLFQLEPEHAGNYV 598

Query: 168 TWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAW 209
           T +++   Y RAG  ++   + + M  + +V  +    G++W
Sbjct: 599 TLSNI---YARAGRWDDAVAVRKLMEDRGLVKPS----GYSW 633


>gi|222641236|gb|EEE69368.1| hypothetical protein OsJ_28705 [Oryza sativa Japonica Group]
          Length = 662

 Score =  301 bits (771), Expect = 6e-79,   Method: Compositional matrix adjust.
 Identities = 170/489 (34%), Positives = 271/489 (55%), Gaps = 13/489 (2%)

Query: 111 VVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECC-MMGEAIVLFEEMEERNVVTW 169
           V   +R G+L  A + F S P K   ++N ++AGY      + +A  LF+ +   + V++
Sbjct: 73  VAAAVRRGDLTGAEEAFASTPRKTTATYNCLLAGYARALGRLADARHLFDRIPTPDAVSY 132

Query: 170 TSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDN 229
            +++S +  +G+ +    LF  MP ++VVSW  M+ G + +G  +E+  +F+ M      
Sbjct: 133 NTLLSCHFASGDADGARRLFASMPVRDVVSWNTMVSGLSKSGAVEEAKAVFLAMPVR--- 189

Query: 230 GNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVR-DEISWTSMIDGYLSVGQVSNAYYL 288
               N  S N+M++G+     +  A+  F   P + D + WT+M+ GY+ +G V  A   
Sbjct: 190 ----NSVSWNAMVSGFACSRDMSAAEEWFRNAPEKGDAVLWTAMVSGYMDIGNVVKAIEY 245

Query: 289 FHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEM-RAHGVPPLNATFS-VLFGAAGATA 346
           F  MP R+ V+W A+++G V+N    +A  LF  M R   V P  +T S VL G +  +A
Sbjct: 246 FEAMPVRNLVSWNAVVAGYVKNSHADDALRLFRTMVREANVQPNASTLSSVLLGCSNLSA 305

Query: 347 NIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVM 406
            +  G+QIH   MK     +L +   L+SMY KCG + +A  +F  M +RD+V+WN+M+ 
Sbjct: 306 -LGFGKQIHQWCMKLPLSRNLTVGTSLVSMYCKCGDLSSACKLFGEMHTRDVVAWNAMIS 364

Query: 407 GFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQ 466
           G++ HG   E + +FE M + G  PN +TF+ +L+AC H GL   G   F  M ++Y I+
Sbjct: 365 GYAQHGDGKEAINLFERMKDEGVEPNWITFVAVLTACIHTGLCDFGIRCFEGMQELYGIE 424

Query: 467 PGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAK 526
           P  +HY  M++LL RAGK++ A + +  +PFEP    +G LL AC   + N E AE AA 
Sbjct: 425 PRVDHYSCMVDLLCRAGKLERAVDLIRSMPFEPHPSAYGTLLAACRVYK-NLEFAELAAG 483

Query: 527 RLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFL 586
           +L+E DP +A A+V L NIYA + +  +  ++R  M    V K PG SW+   G +  F 
Sbjct: 484 KLIEKDPQSAGAYVQLANIYAGANQWDDVSRVRRWMKDNAVVKTPGYSWIEIKGVMHEFR 543

Query: 587 SGDKIPAQV 595
           S D++  Q+
Sbjct: 544 SNDRLHPQL 552



 Score =  200 bits (509), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 132/403 (32%), Positives = 208/403 (51%), Gaps = 20/403 (4%)

Query: 2   SERNHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQN-GRLSE 60
           S R+H  SL    T ++    +RG +  A+  F   P++   +YN +L+G+ +  GRL++
Sbjct: 60  SARSHTCSLS---TVAVAAAVRRGDLTGAEEAFASTPRKTTATYNCLLAGYARALGRLAD 116

Query: 61  ARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGEL 120
           AR LF+ +P  + VS+  ++     +G    AR+LF  MP R+VVSWN+MV GL ++G +
Sbjct: 117 ARHLFDRIPTPDAVSYNTLLSCHFASGDADGARRLFASMPVRDVVSWNTMVSGLSKSGAV 176

Query: 121 NEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEER-NVVTWTSMISGYCRA 179
            EA+ VF +MP++N +SWNAM++G+     M  A   F    E+ + V WT+M+SGY   
Sbjct: 177 EEAKAVFLAMPVRNSVSWNAMVSGFACSRDMSAAEEWFRNAPEKGDAVLWTAMVSGYMDI 236

Query: 180 GEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCN 239
           G V +    F  MP +N+VSW A++ G+  N    ++L LF  M  + +     N  + +
Sbjct: 237 GNVVKAIEYFEAMPVRNLVSWNAVVAGYVKNSHADDALRLFRTM--VREANVQPNASTLS 294

Query: 240 SMINGYIRFGRLEEAQNLFD---TVPV-RDEISWTSMIDGYLSVGQVSNAYYLFHNMPDR 295
           S++ G      L   + +      +P+ R+    TS++  Y   G +S+A  LF  M  R
Sbjct: 295 SVLLGCSNLSALGFGKQIHQWCMKLPLSRNLTVGTSLVSMYCKCGDLSSACKLFGEMHTR 354

Query: 296 DAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIH 355
           D VAW AMISG  Q+    EA  LF  M+  GV P   TF  +  A   T   D G  I 
Sbjct: 355 DVVAWNAMISGYAQHGDGKEAINLFERMKDEGVEPNWITFVAVLTACIHTGLCDFG--IR 412

Query: 356 CV-----LMKTESESDLILENCLISMYAKCGVIDNAYNIFSNM 393
           C      L   E   D    +C++ +  + G ++ A ++  +M
Sbjct: 413 CFEGMQELYGIEPRVDHY--SCMVDLLCRAGKLERAVDLIRSM 453



 Score = 59.7 bits (143), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 48/133 (36%), Positives = 67/133 (50%), Gaps = 19/133 (14%)

Query: 15  TSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMP----E 70
           TS ++ Y K G +  A  LF  M  R+VV++NAM+SG+ Q+G   EA  LFE M     E
Sbjct: 329 TSLVSMYCKCGDLSSACKLFGEMHTRDVVAWNAMISGYAQHGDGKEAINLFERMKDEGVE 388

Query: 71  RNVVSWTAMIC-----GLADAGRVCEARKLFEEMPE-----RNVVSWNSMVVGLIRNGEL 120
            N +++ A++      GL D G  C     FE M E       V  ++ MV  L R G+L
Sbjct: 389 PNWITFVAVLTACIHTGLCDFGIRC-----FEGMQELYGIEPRVDHYSCMVDLLCRAGKL 443

Query: 121 NEARKVFNSMPIK 133
             A  +  SMP +
Sbjct: 444 ERAVDLIRSMPFE 456


>gi|225451187|ref|XP_002271063.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 805

 Score =  301 bits (771), Expect = 6e-79,   Method: Compositional matrix adjust.
 Identities = 194/629 (30%), Positives = 309/629 (49%), Gaps = 61/629 (9%)

Query: 15  TSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVV 74
           T  +  YS    ++ A+ +F    Q   +  NAML G+LQ+GR  E   LF  M  RN+ 
Sbjct: 68  TKLVKAYSDLRSLEAARYVFDQFFQPKGLLCNAMLCGYLQSGRYRETLELFGLMRSRNL- 126

Query: 75  SWTAMICGLADAGRVCEARKLFE-----------EMPERNVVSWNSMVVGLIRNGELNEA 123
                 C    A + C +   +E           +  E+N    +SM+  L++ G++ EA
Sbjct: 127 --EVDSCSCTFALKACASSLDYEMGMEIISSAVEKGMEKNRFVGSSMISFLVKFGKIGEA 184

Query: 124 RKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNV----VTWTSMISG---- 175
           ++VF+ MP K+V+ WN++I GYV+      A  LF EM    +    +T TS+I      
Sbjct: 185 QRVFDGMPNKDVVCWNSIIGGYVQAGCFDVAFQLFFEMHGSGIKPSPITMTSLIQACGGI 244

Query: 176 -------------------------------YCRAGEVEEGYCLFRRMPRKNVVSWTAMI 204
                                          Y + G++E    +F +MP +N+VSW AMI
Sbjct: 245 GNLKLGKCMHGYVLGLGLGNDILVLTSFVDMYSKMGDIESARWVFYKMPTRNLVSWNAMI 304

Query: 205 GGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVR 264
            G   NG   ES  LF  +     +    ++ +  S++ G  +   L   + L       
Sbjct: 305 SGCVRNGLVGESFDLFHRL---VRSSGGFDLTTIVSLLQGCSQTASLATGKILHGCAIRS 361

Query: 265 DE---ISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFM 321
            E   I  T+++D Y   G +  A ++F+ M DR+ + WTAM+ GL QN    +A  LF 
Sbjct: 362 FESNLILSTAIVDLYSKCGSLKQATFVFNRMKDRNVITWTAMLVGLAQNGHAEDALRLFA 421

Query: 322 EMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCG 381
           +M+  G+   + TF  L  +     ++  GR IH  L +     D++    L+ MYAKCG
Sbjct: 422 QMQEEGIAANSVTFVSLVHSCAHLGSLKRGRSIHGHLFRLGFAFDIVNMTALVDMYAKCG 481

Query: 382 VIDNAYNIFSN-MVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGIL 440
            I+ A  IFS+  +S+D+V WNSM+ G+  HG   + + ++  M+E G  PN  TFL +L
Sbjct: 482 KINLAERIFSHGSISKDVVLWNSMITGYGMHGHGYQAVGIYHKMIEEGLKPNQTTFLSLL 541

Query: 441 SACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPD 500
           SACSH+ LV +G  LFN+M   + I+P  +HY  +++LL RAG+ +EA+  + ++PF+P 
Sbjct: 542 SACSHSRLVEQGISLFNSMERDHNIRPIEKHYACLVDLLSRAGRFEEAQALIEKMPFQPG 601

Query: 501 HRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRM 560
             +  ALL  C     N  +    + +LL LD +N   +++L NIYA + R  +   +R 
Sbjct: 602 TAVLEALLSGCR-THKNINLGIQTSDKLLALDAMNPGIYIMLSNIYAEARRWDKVDYIRG 660

Query: 561 DMGLKGVRKVPGCSWLMRNGGIQMFLSGD 589
            M  +G++K PG S +     +  F +GD
Sbjct: 661 LMRNRGLKKTPGYSLVETGNWVHTFFAGD 689



 Score = 75.9 bits (185), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 55/249 (22%), Positives = 111/249 (44%), Gaps = 6/249 (2%)

Query: 265 DEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMR 324
           D+   T ++  Y  +  +  A Y+F        +   AM+ G +Q+  + E   LF  MR
Sbjct: 63  DQFVATKLVKAYSDLRSLEAARYVFDQFFQPKGLLCNAMLCGYLQSGRYRETLELFGLMR 122

Query: 325 AHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVID 384
           +  +   + + +    A  ++ + ++G +I    ++   E +  + + +IS   K G I 
Sbjct: 123 SRNLEVDSCSCTFALKACASSLDYEMGMEIISSAVEKGMEKNRFVGSSMISFLVKFGKIG 182

Query: 385 NAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACS 444
            A  +F  M ++D+V WNS++ G+   G  +   ++F  M  SG  P+ +T   ++ AC 
Sbjct: 183 EAQRVFDGMPNKDVVCWNSIIGGYVQAGCFDVAFQLFFEMHGSGIKPSPITMTSLIQACG 242

Query: 445 HAGLVSRGWELFNAMFDVYKIQPGPEHYV--SMINLLGRAGKIKEAEEFVLRLPFEPDHR 502
             G +  G  +      V  +  G +  V  S +++  + G I+ A     ++P   +  
Sbjct: 243 GIGNLKLGKCMHGY---VLGLGLGNDILVLTSFVDMYSKMGDIESARWVFYKMP-TRNLV 298

Query: 503 IWGALLGAC 511
            W A++  C
Sbjct: 299 SWNAMISGC 307



 Score = 41.6 bits (96), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 38/171 (22%), Positives = 74/171 (43%), Gaps = 10/171 (5%)

Query: 344 ATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNS 403
           ++ N+   +  H  ++     +D  +   L+  Y+    ++ A  +F        +  N+
Sbjct: 41  SSKNLIWVKSTHAQIITNSLSTDQFVATKLVKAYSDLRSLEAARYVFDQFFQPKGLLCNA 100

Query: 404 MVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVY 463
           M+ G+   G   ETL++F  M       +S +    L AC+ +     G E+ ++     
Sbjct: 101 MLCGYLQSGRYRETLELFGLMRSRNLEVDSCSCTFALKACASSLDYEMGMEIISS----- 155

Query: 464 KIQPGPE--HYV--SMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGA 510
            ++ G E   +V  SMI+ L + GKI EA+     +P   D   W +++G 
Sbjct: 156 AVEKGMEKNRFVGSSMISFLVKFGKIGEAQRVFDGMP-NKDVVCWNSIIGG 205


>gi|297607983|ref|NP_001061009.2| Os08g0153600 [Oryza sativa Japonica Group]
 gi|255678154|dbj|BAF22923.2| Os08g0153600 [Oryza sativa Japonica Group]
          Length = 551

 Score =  301 bits (771), Expect = 7e-79,   Method: Compositional matrix adjust.
 Identities = 170/489 (34%), Positives = 271/489 (55%), Gaps = 13/489 (2%)

Query: 111 VVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECC-MMGEAIVLFEEMEERNVVTW 169
           V   +R G+L  A + F S P K   ++N ++AGY      + +A  LF+ +   + V++
Sbjct: 24  VAAAVRRGDLTGAEEAFASTPRKTTATYNCLLAGYARALGRLADARHLFDRIPTPDAVSY 83

Query: 170 TSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDN 229
            +++S +  +G+ +    LF  MP ++VVSW  M+ G + +G  +E+  +F+ M      
Sbjct: 84  NTLLSCHFASGDADGARRLFASMPVRDVVSWNTMVSGLSKSGAVEEAKAVFLAMPVR--- 140

Query: 230 GNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVR-DEISWTSMIDGYLSVGQVSNAYYL 288
               N  S N+M++G+     +  A+  F   P + D + WT+M+ GY+ +G V  A   
Sbjct: 141 ----NSVSWNAMVSGFACSRDMSAAEEWFRNAPEKGDAVLWTAMVSGYMDIGNVVKAIEY 196

Query: 289 FHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEM-RAHGVPPLNATFS-VLFGAAGATA 346
           F  MP R+ V+W A+++G V+N    +A  LF  M R   V P  +T S VL G +  +A
Sbjct: 197 FEAMPVRNLVSWNAVVAGYVKNSHADDALRLFRTMVREANVQPNASTLSSVLLGCSNLSA 256

Query: 347 NIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVM 406
            +  G+QIH   MK     +L +   L+SMY KCG + +A  +F  M +RD+V+WN+M+ 
Sbjct: 257 -LGFGKQIHQWCMKLPLSRNLTVGTSLVSMYCKCGDLSSACKLFGEMHTRDVVAWNAMIS 315

Query: 407 GFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQ 466
           G++ HG   E + +FE M + G  PN +TF+ +L+AC H GL   G   F  M ++Y I+
Sbjct: 316 GYAQHGDGKEAINLFERMKDEGVEPNWITFVAVLTACIHTGLCDFGIRCFEGMQELYGIE 375

Query: 467 PGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAK 526
           P  +HY  M++LL RAGK++ A + +  +PFEP    +G LL AC   + N E AE AA 
Sbjct: 376 PRVDHYSCMVDLLCRAGKLERAVDLIRSMPFEPHPSAYGTLLAACRVYK-NLEFAELAAG 434

Query: 527 RLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFL 586
           +L+E DP +A A+V L NIYA + +  +  ++R  M    V K PG SW+   G +  F 
Sbjct: 435 KLIEKDPQSAGAYVQLANIYAGANQWDDVSRVRRWMKDNAVVKTPGYSWIEIKGVMHEFR 494

Query: 587 SGDKIPAQV 595
           S D++  Q+
Sbjct: 495 SNDRLHPQL 503



 Score =  200 bits (508), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 132/403 (32%), Positives = 208/403 (51%), Gaps = 20/403 (4%)

Query: 2   SERNHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQN-GRLSE 60
           S R+H  SL    T ++    +RG +  A+  F   P++   +YN +L+G+ +  GRL++
Sbjct: 11  SARSHTCSLS---TVAVAAAVRRGDLTGAEEAFASTPRKTTATYNCLLAGYARALGRLAD 67

Query: 61  ARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGEL 120
           AR LF+ +P  + VS+  ++     +G    AR+LF  MP R+VVSWN+MV GL ++G +
Sbjct: 68  ARHLFDRIPTPDAVSYNTLLSCHFASGDADGARRLFASMPVRDVVSWNTMVSGLSKSGAV 127

Query: 121 NEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEER-NVVTWTSMISGYCRA 179
            EA+ VF +MP++N +SWNAM++G+     M  A   F    E+ + V WT+M+SGY   
Sbjct: 128 EEAKAVFLAMPVRNSVSWNAMVSGFACSRDMSAAEEWFRNAPEKGDAVLWTAMVSGYMDI 187

Query: 180 GEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCN 239
           G V +    F  MP +N+VSW A++ G+  N    ++L LF  M  + +     N  + +
Sbjct: 188 GNVVKAIEYFEAMPVRNLVSWNAVVAGYVKNSHADDALRLFRTM--VREANVQPNASTLS 245

Query: 240 SMINGYIRFGRLEEAQNLFD---TVPV-RDEISWTSMIDGYLSVGQVSNAYYLFHNMPDR 295
           S++ G      L   + +      +P+ R+    TS++  Y   G +S+A  LF  M  R
Sbjct: 246 SVLLGCSNLSALGFGKQIHQWCMKLPLSRNLTVGTSLVSMYCKCGDLSSACKLFGEMHTR 305

Query: 296 DAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIH 355
           D VAW AMISG  Q+    EA  LF  M+  GV P   TF  +  A   T   D G  I 
Sbjct: 306 DVVAWNAMISGYAQHGDGKEAINLFERMKDEGVEPNWITFVAVLTACIHTGLCDFG--IR 363

Query: 356 CV-----LMKTESESDLILENCLISMYAKCGVIDNAYNIFSNM 393
           C      L   E   D    +C++ +  + G ++ A ++  +M
Sbjct: 364 CFEGMQELYGIEPRVDHY--SCMVDLLCRAGKLERAVDLIRSM 404



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 48/133 (36%), Positives = 67/133 (50%), Gaps = 19/133 (14%)

Query: 15  TSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMP----E 70
           TS ++ Y K G +  A  LF  M  R+VV++NAM+SG+ Q+G   EA  LFE M     E
Sbjct: 280 TSLVSMYCKCGDLSSACKLFGEMHTRDVVAWNAMISGYAQHGDGKEAINLFERMKDEGVE 339

Query: 71  RNVVSWTAMIC-----GLADAGRVCEARKLFEEMPE-----RNVVSWNSMVVGLIRNGEL 120
            N +++ A++      GL D G  C     FE M E       V  ++ MV  L R G+L
Sbjct: 340 PNWITFVAVLTACIHTGLCDFGIRC-----FEGMQELYGIEPRVDHYSCMVDLLCRAGKL 394

Query: 121 NEARKVFNSMPIK 133
             A  +  SMP +
Sbjct: 395 ERAVDLIRSMPFE 407


>gi|147865382|emb|CAN79811.1| hypothetical protein VITISV_018821 [Vitis vinifera]
          Length = 871

 Score =  301 bits (771), Expect = 7e-79,   Method: Compositional matrix adjust.
 Identities = 196/581 (33%), Positives = 302/581 (51%), Gaps = 36/581 (6%)

Query: 41  NVVSYNAMLSGFLQNGRLSEARRLFEEMPERNV---VSWTAMICGLADAGRVCEARKLFE 97
           NV   N ++S + + G    AR++F+EM ER V   VSW +++      G    A K+FE
Sbjct: 179 NVFVGNGLVSMYGRCGAWENARQVFDEMRERGVGDLVSWNSIVAAYMQGGDSIRAMKMFE 238

Query: 98  EMPER-----NVVSWNSMVVGLIRNGELNEARKV----FNSMPIKNVISWNAMIAGYVEC 148
            M E      + VS  +++      G  +  ++V      S   ++V   NA++  Y +C
Sbjct: 239 RMTEDLGIRPDAVSLVNVLPACASVGAWSRGKQVHGYALRSGLFEDVFVGNAVVDMYAKC 298

Query: 149 CMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRK----NVVSWTAMI 204
            MM EA  +FE M+ ++VV+W +M++GY + G  ++   LF ++  +    NVV+W+A+I
Sbjct: 299 GMMEEANKVFERMKVKDVVSWNAMVTGYSQIGRFDDALGLFEKIREEKIELNVVTWSAVI 358

Query: 205 GGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQ--------- 255
            G+A  G   E+L +F +M  +C  G+  NV +  S+++G    G L   +         
Sbjct: 359 AGYAQRGLGFEALDVFRQML-LC--GSEPNVVTLVSLLSGCASAGTLLHGKETHCHAIKW 415

Query: 256 --NLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMP--DRDAVAWTAMISGLVQNE 311
             NL +  P  D +   ++ID Y        A  +F  +P  DR  V WT +I G  Q+ 
Sbjct: 416 ILNLDENDPGDDLMVINALIDMYSKCKSPKAARAMFDLIPPKDRSVVTWTVLIGGNAQHG 475

Query: 312 LFVEATYLFMEMRAHG--VPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESD-LI 368
              EA  LF +M      V P   T S    A      +  GRQIH  +++   ES  L 
Sbjct: 476 EANEALELFSQMLQPDNFVMPNAFTISCALMACARLGALRFGRQIHAYVLRNRFESAMLF 535

Query: 369 LENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESG 428
           + NCLI MY+K G +D A  +F NM  R+ VSW S++ G+  HG   E L++F  M +  
Sbjct: 536 VANCLIDMYSKSGDVDAARVVFDNMHQRNGVSWTSLMTGYGMHGRGEEALQIFYEMQKVX 595

Query: 429 THPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEA 488
             P+ VTF+ +L ACSH+G+V +G   FN M   + + PG EHY  M++LL RAG++ EA
Sbjct: 596 LVPDGVTFVVVLYACSHSGMVDQGINYFNGMNKDFGVVPGAEHYACMVDLLSRAGRLDEA 655

Query: 489 EEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAA 548
            E +  +P +P   +W ALL AC     N E+ E+AA +LLEL+  N  ++ +L NIYA 
Sbjct: 656 MELIRGMPMKPTPAVWVALLSACR-VYANVELGEYAANQLLELESGNDGSYTLLSNIYAN 714

Query: 549 SGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGD 589
           +    +  ++R  M   G++K PGCSW+    G   F +GD
Sbjct: 715 ARCWKDVARIRYLMKNTGIKKRPGCSWVQGRKGTATFFAGD 755



 Score =  125 bits (314), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 109/404 (26%), Positives = 182/404 (45%), Gaps = 61/404 (15%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPER----NV 73
           +  Y+K G ++EA  +F+ M  ++VVS+NAM++G+ Q GR  +A  LFE++ E     NV
Sbjct: 292 VDMYAKCGMMEEANKVFERMKVKDVVSWNAMVTGYSQIGRFDDALGLFEKIREEKIELNV 351

Query: 74  VSWTAMICGLADAGRVCEARKLFEEM----PERNVVSWNSMVVGLIRNGELNEARKVF-- 127
           V+W+A+I G A  G   EA  +F +M     E NVV+  S++ G    G L   ++    
Sbjct: 352 VTWSAVIAGYAQRGLGFEALDVFRQMLLCGSEPNVVTLVSLLSGCASAGTLLHGKETHCH 411

Query: 128 ---------NSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEM--EERNVVTWTSMISGY 176
                     + P  +++  NA+I  Y +C     A  +F+ +  ++R+VVTWT +I G 
Sbjct: 412 AIKWILNLDENDPGDDLMVINALIDMYSKCKSPKAARAMFDLIPPKDRSVVTWTVLIGGN 471

Query: 177 CRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQ 236
            + GE  E   LF +M + +      M   F                        +C + 
Sbjct: 472 AQHGEANEALELFSQMLQPDNF---VMPNAFTI----------------------SCALM 506

Query: 237 SCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRD 296
           +C  +  G +RFGR   A  L +            +ID Y   G V  A  +F NM  R+
Sbjct: 507 ACARL--GALRFGRQIHAYVLRNRFESAMLFVANCLIDMYSKSGDVDAARVVFDNMHQRN 564

Query: 297 AVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLG----- 351
            V+WT++++G   +    EA  +F EM+   + P   TF V+  A   +  +D G     
Sbjct: 565 GVSWTSLMTGYGMHGRGEEALQIFYEMQKVXLVPDGVTFVVVLYACSHSGMVDQGINYFN 624

Query: 352 --RQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNM 393
              +   V+   E  +      C++ + ++ G +D A  +   M
Sbjct: 625 GMNKDFGVVPGAEHYA------CMVDLLSRAGRLDEAMELIRGM 662



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 100/412 (24%), Positives = 173/412 (41%), Gaps = 59/412 (14%)

Query: 103 NVVSWNSMVVGLIRNGELNEARKVFNSM------PIKNVISWNAMIAGYVECCMMGEAI- 155
            V  WN ++   +  G L +  +++  M      P      +     G +     G ++ 
Sbjct: 109 TVFWWNQLIRRSVHLGFLEDVLQLYRRMQRLGWRPDHYTFPFVLKACGEIPSFRCGASVH 168

Query: 156 -VLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNV---VSWTAMIGGFAWNG 211
            V+F    E NV     ++S Y R G  E    +F  M  + V   VSW +++  +   G
Sbjct: 169 AVVFASGFEWNVFVGNGLVSMYGRCGAWENARQVFDEMRERGVGDLVSWNSIVAAYMQGG 228

Query: 212 FHKESLLLFIEMK----------------------GICDNGNNC-----------NVQSC 238
               ++ +F  M                       G    G              +V   
Sbjct: 229 DSIRAMKMFERMTEDLGIRPDAVSLVNVLPACASVGAWSRGKQVHGYALRSGLFEDVFVG 288

Query: 239 NSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDR--- 295
           N++++ Y + G +EEA  +F+ + V+D +SW +M+ GY  +G+  +A  LF  + +    
Sbjct: 289 NAVVDMYAKCGMMEEANKVFERMKVKDVVSWNAMVTGYSQIGRFDDALGLFEKIREEKIE 348

Query: 296 -DAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQI 354
            + V W+A+I+G  Q  L  EA  +F +M   G  P   T   L     +   +  G++ 
Sbjct: 349 LNVVTWSAVIAGYAQRGLGFEALDVFRQMLLCGSEPNVVTLVSLLSGCASAGTLLHGKET 408

Query: 355 HCVLMK-------TESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRD--LVSWNSMV 405
           HC  +K        +   DL++ N LI MY+KC     A  +F  +  +D  +V+W  ++
Sbjct: 409 HCHAIKWILNLDENDPGDDLMVINALIDMYSKCKSPKAARAMFDLIPPKDRSVVTWTVLI 468

Query: 406 MGFSHHGLANETLKVFESMLESGTH--PNSVTFLGILSACSHAGLVSRGWEL 455
            G + HG ANE L++F  ML+      PN+ T    L AC+  G +  G ++
Sbjct: 469 GGNAQHGEANEALELFSQMLQPDNFVMPNAFTISCALMACARLGALRFGRQI 520



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 68/249 (27%), Positives = 118/249 (47%), Gaps = 16/249 (6%)

Query: 270 TSMIDGYLSVGQVSNAYYLFHNM-PDRDAVAW-TAMISGLVQNELFVEATYLFMEMRAHG 327
           T +I  YL+    + A  +   + P    V W   +I   V      +   L+  M+  G
Sbjct: 81  THIISMYLTFNSPAKALSVLRRLHPSSHTVFWWNQLIRRSVHLGFLEDVLQLYRRMQRLG 140

Query: 328 VPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAY 387
             P + TF  +  A G   +   G  +H V+  +  E ++ + N L+SMY +CG  +NA 
Sbjct: 141 WRPDHYTFPFVLKACGEIPSFRCGASVHAVVFASGFEWNVFVGNGLVSMYGRCGAWENAR 200

Query: 388 NIFSNMVSR---DLVSWNSMVMGFSHHGLANETLKVFESMLES-GTHPNSVTFLGILSAC 443
            +F  M  R   DLVSWNS+V  +   G +   +K+FE M E  G  P++V+ + +L AC
Sbjct: 201 QVFDEMRERGVGDLVSWNSIVAAYMQGGDSIRAMKMFERMTEDLGIRPDAVSLVNVLPAC 260

Query: 444 SHAGLVSRGWELFNAMFDVYKIQPGPEHYV----SMINLLGRAGKIKEAEEFVLRLPFEP 499
           +  G  SRG ++       Y ++ G    V    +++++  + G ++EA +   R+  + 
Sbjct: 261 ASVGAWSRGKQVHG-----YALRSGLFEDVFVGNAVVDMYAKCGMMEEANKVFERMKVK- 314

Query: 500 DHRIWGALL 508
           D   W A++
Sbjct: 315 DVVSWNAMV 323



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 92/366 (25%), Positives = 162/366 (44%), Gaps = 74/366 (20%)

Query: 11  VVHLTSSITKYSKRGFIDEAKALFQLMPQR----NVVSYNAMLSGFLQNGRLSEARRLFE 66
           VV   + +T YS+ G  D+A  LF+ + +     NVV+++A+++G+ Q G   EA  +F 
Sbjct: 316 VVSWNAMVTGYSQIGRFDDALGLFEKIREEKIELNVVTWSAVIAGYAQRGLGFEALDVFR 375

Query: 67  EM----PERNVVSWTAMICGLADAGRV--------------------------------- 89
           +M     E NVV+  +++ G A AG +                                 
Sbjct: 376 QMLLCGSEPNVVTLVSLLSGCASAGTLLHGKETHCHAIKWILNLDENDPGDDLMVINALI 435

Query: 90  -----CE----ARKLFEEMP--ERNVVSWNSMVVGLIRNGELNEARKVFNSM-PIKNVIS 137
                C+    AR +F+ +P  +R+VV+W  ++ G  ++GE NEA ++F+ M    N + 
Sbjct: 436 DMYSKCKSPKAARAMFDLIPPKDRSVVTWTVLIGGNAQHGEANEALELFSQMLQPDNFVM 495

Query: 138 WNAMI--AGYVECCMMG--------EAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYC 187
            NA       + C  +G         A VL    E   +     +I  Y ++G+V+    
Sbjct: 496 PNAFTISCALMACARLGALRFGRQIHAYVLRNRFESAMLFVANCLIDMYSKSGDVDAARV 555

Query: 188 LFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGI--CDNGNNCNVQ----SCNSM 241
           +F  M ++N VSWT+++ G+  +G  +E+L +F EM+ +    +G    V     S + M
Sbjct: 556 VFDNMHQRNGVSWTSLMTGYGMHGRGEEALQIFYEMQKVXLVPDGVTFVVVLYACSHSGM 615

Query: 242 INGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVA-W 300
           ++  I +         F  VP  +   +  M+D     G++  A  L   MP +   A W
Sbjct: 616 VDQGINY--FNGMNKDFGVVPGAEH--YACMVDLLSRAGRLDEAMELIRGMPMKPTPAVW 671

Query: 301 TAMISG 306
            A++S 
Sbjct: 672 VALLSA 677



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 69/289 (23%), Positives = 124/289 (42%), Gaps = 51/289 (17%)

Query: 3   ERNHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMP--QRNVVSYNAMLSGFLQNGRLSE 60
           + N P   ++ + + I  YSK      A+A+F L+P   R+VV++  ++ G  Q+G  +E
Sbjct: 420 DENDPGDDLMVINALIDMYSKCKSPKAARAMFDLIPPKDRSVVTWTVLIGGNAQHGEANE 479

Query: 61  ARRLFEE--------MPERNVVSWTAMICGLADA---GRVCEARKLFEEMPERNVVSWNS 109
           A  LF +        MP    +S   M C    A   GR   A  L        +   N 
Sbjct: 480 ALELFSQMLQPDNFVMPNAFTISCALMACARLGALRFGRQIHAYVLRNRFESAMLFVANC 539

Query: 110 MVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNV--- 166
           ++    ++G+++ AR VF++M  +N +SW +++ GY       EA+ +F EM++  +   
Sbjct: 540 LIDMYSKSGDVDAARVVFDNMHQRNGVSWTSLMTGYGMHGRGEEALQIFYEMQKVXLVPD 599

Query: 167 -VTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKG 225
            VT+  ++     +G V++G   F                    NG +K           
Sbjct: 600 GVTFVVVLYACSHSGMVDQGINYF--------------------NGMNK----------- 628

Query: 226 ICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEIS-WTSMI 273
             D G     +    M++   R GRL+EA  L   +P++   + W +++
Sbjct: 629 --DFGVVPGAEHYACMVDLLSRAGRLDEAMELIRGMPMKPTPAVWVALL 675


>gi|359488315|ref|XP_002278668.2| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Vitis vinifera]
          Length = 877

 Score =  301 bits (771), Expect = 7e-79,   Method: Compositional matrix adjust.
 Identities = 195/640 (30%), Positives = 312/640 (48%), Gaps = 57/640 (8%)

Query: 11  VVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPE 70
           VV  ++ +  Y+K   +D +   F  MP++N VS++A+++G +QN  L     LF+EM +
Sbjct: 209 VVTGSALLDMYAKCKKLDCSIQFFHSMPEKNWVSWSAIIAGCVQNDDLRGGLELFKEMQK 268

Query: 71  RNV-VSWTAMICGLADAGRVC---EARKLFEEMPER--------NVVSWNSMVVGLIRNG 118
             V VS +      A   R C    A +L  ++           +VV   + +   ++  
Sbjct: 269 AGVGVSQST----FASVFRSCAGLSALRLGSQLHGHALKTDFGTDVVIGTATLDMYMKCN 324

Query: 119 ELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEME---------------- 162
            L++A+K+FNS+P  N+ S+NA+I GY       EA+ +F  ++                
Sbjct: 325 NLSDAQKLFNSLPNHNLQSYNAIIVGYARSDKGIEALGMFRLLQKSGLGLDEVSLSGAFR 384

Query: 163 -----------------------ERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVS 199
                                  + N+    +++  Y + G + E   +F  M  ++ VS
Sbjct: 385 ACAVIKGDLEGLQVHGLSMKSLCQSNICVANAILDMYGKCGALVEACLVFEEMVSRDAVS 444

Query: 200 WTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQN-LF 258
           W A+I     NG  +++L LF+ M       +     S      G+       E  N + 
Sbjct: 445 WNAIIAAHEQNGNEEKTLSLFVWMLQSGMEPDEFTYGSVLKACAGWQALNCGMEIHNRII 504

Query: 259 DTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATY 318
            +    D     ++ID Y   G +  A  L   + ++  V+W A+ISG    +   EA  
Sbjct: 505 KSRLGLDSFVGIALIDMYSKCGMMEKAEKLHDRLAEQTVVSWNAIISGFSLQKQSEEAQK 564

Query: 319 LFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYA 378
            F +M   GV P N T++ +         ++LG+QIH  ++K E +SD  + + L+ MY+
Sbjct: 565 TFSKMLEMGVDPDNFTYATILDTCANLVTVELGKQIHAQIIKKELQSDAYISSTLVDMYS 624

Query: 379 KCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLG 438
           KCG + +   IF    +RD V+WN+MV G++ HGL  E LK+FE M      PN  TFL 
Sbjct: 625 KCGNMQDFQLIFEKAPNRDFVTWNAMVCGYAQHGLGEEALKIFEYMQLENVKPNHATFLA 684

Query: 439 ILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFE 498
           +L AC H GLV +G   F++M   Y + P  EHY  +++++GR+G++ +A E +  +PFE
Sbjct: 685 VLRACGHMGLVEKGLHYFHSMLSNYGLDPQLEHYSCVVDIMGRSGQVSKALELIEGMPFE 744

Query: 499 PDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKL 558
            D  IW  LL  C    GN E+AE AA  +L+L+P ++ A+V+L NIYA +G   E  KL
Sbjct: 745 ADAVIWRTLLSICKI-HGNVEVAEKAAYSILQLEPEDSAAYVLLSNIYANAGMWNEVTKL 803

Query: 559 RMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
           R  M   G++K PGCSW+     +  FL GDK   +  EI
Sbjct: 804 RKMMRFNGLKKEPGCSWIEIKSEVHAFLVGDKAHPRSKEI 843



 Score =  206 bits (524), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 148/526 (28%), Positives = 263/526 (50%), Gaps = 40/526 (7%)

Query: 41  NVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMP 100
            V   N ++  +++   L  A ++F+ MP+R+ VSW AM+ G A  G +  A+KLF+ MP
Sbjct: 76  TVFVTNCLIQMYIKCSDLEFAFKVFDGMPQRDTVSWNAMLFGYAGRGDIGVAQKLFDAMP 135

Query: 101 ERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECC----------- 149
           ER+VVSWNS++ G + NG+  +   VF  M     +      A  ++ C           
Sbjct: 136 ERDVVSWNSLISGYLHNGDHRKVIDVFLQMGRMGTVFDRTTFAVVLKSCSSLEDHGGGIQ 195

Query: 150 MMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAW 209
           + G A+ +  + +   VVT ++++  Y +  +++     F  MP KN VSW+A+I G   
Sbjct: 196 IHGLAVKMGFDCD---VVTGSALLDMYAKCKKLDCSIQFFHSMPEKNWVSWSAIIAGCVQ 252

Query: 210 NGFHKESLLLFIEMK----GICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRD 265
           N   +  L LF EM+    G+  +      +SC  +    +R G       L  T    D
Sbjct: 253 NDDLRGGLELFKEMQKAGVGVSQSTFASVFRSCAGL--SALRLGSQLHGHAL-KTDFGTD 309

Query: 266 EISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRA 325
            +  T+ +D Y+    +S+A  LF+++P+ +  ++ A+I G  +++  +EA  +F  ++ 
Sbjct: 310 VVIGTATLDMYMKCNNLSDAQKLFNSLPNHNLQSYNAIIVGYARSDKGIEALGMFRLLQK 369

Query: 326 HGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDN 385
            G+     + S  F A         G Q+H + MK+  +S++ + N ++ MY KCG +  
Sbjct: 370 SGLGLDEVSLSGAFRACAVIKGDLEGLQVHGLSMKSLCQSNICVANAILDMYGKCGALVE 429

Query: 386 AYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSH 445
           A  +F  MVSRD VSWN+++     +G   +TL +F  ML+SG  P+  T+  +L AC+ 
Sbjct: 430 ACLVFEEMVSRDAVSWNAIIAAHEQNGNEEKTLSLFVWMLQSGMEPDEFTYGSVLKACA- 488

Query: 446 AGLVSRGWELFNAMFDVY----KIQPGPEHYV--SMINLLGRAGKIKEAEEFVLRLPFEP 499
                 GW+  N   +++    K + G + +V  ++I++  + G +++AE+   RL  E 
Sbjct: 489 ------GWQALNCGMEIHNRIIKSRLGLDSFVGIALIDMYSKCGMMEKAEKLHDRLA-EQ 541

Query: 500 DHRIWGALLGACGFC-EGNAEIAEHAAKRLLEL--DPLNAPAHVVL 542
               W A++   GF  +  +E A+    ++LE+  DP N     +L
Sbjct: 542 TVVSWNAIIS--GFSLQKQSEEAQKTFSKMLEMGVDPDNFTYATIL 585



 Score =  166 bits (420), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 140/600 (23%), Positives = 270/600 (45%), Gaps = 67/600 (11%)

Query: 7   PKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFE 66
           P+   V   + +  Y+ RG I  A+ LF  MP+R+VVS+N+++SG+L NG   +   +F 
Sbjct: 104 PQRDTVSWNAMLFGYAGRGDIGVAQKLFDAMPERDVVSWNSLISGYLHNGDHRKVIDVFL 163

Query: 67  EMP---------------------------------------ERNVVSWTAMICGLADAG 87
           +M                                        + +VV+ +A++   A   
Sbjct: 164 QMGRMGTVFDRTTFAVVLKSCSSLEDHGGGIQIHGLAVKMGFDCDVVTGSALLDMYAKCK 223

Query: 88  RVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVE 147
           ++  + + F  MPE+N VSW++++ G ++N +L    ++F  M    V    +  A    
Sbjct: 224 KLDCSIQFFHSMPEKNWVSWSAIIAGCVQNDDLRGGLELFKEMQKAGVGVSQSTFASVFR 283

Query: 148 CCMMGEAIVLFEEMEER--------NVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVS 199
            C    A+ L  ++           +VV  T+ +  Y +   + +   LF  +P  N+ S
Sbjct: 284 SCAGLSALRLGSQLHGHALKTDFGTDVVIGTATLDMYMKCNNLSDAQKLFNSLPNHNLQS 343

Query: 200 WTAMIGGFAWNGFHKESLLLFIEMK----GICDNGNNCNVQSCNSMINGYIRFGRLEEAQ 255
           + A+I G+A +    E+L +F  ++    G+ +   +   ++C ++I G +    L+   
Sbjct: 344 YNAIIVGYARSDKGIEALGMFRLLQKSGLGLDEVSLSGAFRAC-AVIKGDLE--GLQVHG 400

Query: 256 NLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVE 315
               ++   +     +++D Y   G +  A  +F  M  RDAV+W A+I+   QN    +
Sbjct: 401 LSMKSLCQSNICVANAILDMYGKCGALVEACLVFEEMVSRDAVSWNAIIAAHEQNGNEEK 460

Query: 316 ATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLIS 375
              LF+ M   G+ P   T+  +  A      ++ G +IH  ++K+    D  +   LI 
Sbjct: 461 TLSLFVWMLQSGMEPDEFTYGSVLKACAGWQALNCGMEIHNRIIKSRLGLDSFVGIALID 520

Query: 376 MYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVT 435
           MY+KCG+++ A  +   +  + +VSWN+++ GFS    + E  K F  MLE G  P++ T
Sbjct: 521 MYSKCGMMEKAEKLHDRLAEQTVVSWNAIISGFSLQKQSEEAQKTFSKMLEMGVDPDNFT 580

Query: 436 FLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVS--MINLLGRAGKIKEAEEFVL 493
           +  IL  C++   V  G ++      + K +   + Y+S  ++++  + G +++ +    
Sbjct: 581 YATILDTCANLVTVELGKQIHA---QIIKKELQSDAYISSTLVDMYSKCGNMQDFQLIFE 637

Query: 494 RLPFEPDHRIWGALLGACGFCEGNAEIAEHAAK--RLLELDPLNAPAHVVLCNIYAASGR 551
           + P   D   W A++  CG+ +    + E A K    ++L+ +  P H     +  A G 
Sbjct: 638 KAP-NRDFVTWNAMV--CGYAQHG--LGEEALKIFEYMQLENVK-PNHATFLAVLRACGH 691



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 34/101 (33%), Positives = 53/101 (52%)

Query: 326 HGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDN 385
              P    TFS +F        +  G+Q H  ++ TE +  + + NCLI MY KC  ++ 
Sbjct: 36  QATPTKKKTFSHIFQECSDRKALCPGKQAHARMILTEFKPTVFVTNCLIQMYIKCSDLEF 95

Query: 386 AYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLE 426
           A+ +F  M  RD VSWN+M+ G++  G      K+F++M E
Sbjct: 96  AFKVFDGMPQRDTVSWNAMLFGYAGRGDIGVAQKLFDAMPE 136


>gi|188509980|gb|ACD56662.1| putative pentatricopeptide [Gossypium arboreum]
          Length = 805

 Score =  301 bits (771), Expect = 7e-79,   Method: Compositional matrix adjust.
 Identities = 175/584 (29%), Positives = 305/584 (52%), Gaps = 48/584 (8%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWT 77
           ++ Y+  G + E + +F  M ++NV  +N M+S + + G   E+  LF+ M E+ +    
Sbjct: 141 VSFYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGI---- 196

Query: 78  AMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNV-I 136
                  +  R   A +LF+++ +R+V+SWNSM+ G + NG       ++  M    + +
Sbjct: 197 -------EGKRPESAFELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDV 249

Query: 137 SWNAMIAGYVECC-----MMGEAI--VLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLF 189
               +I+  V C       +G+A+  +  +   ER +    +++  Y + G+++    +F
Sbjct: 250 DLATIISVLVGCANSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVF 309

Query: 190 RRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFG 249
            +M  +NVVSWT+MI G+  +G    ++ L  +M+     G   +V +  S+++   R G
Sbjct: 310 EKMGERNVVSWTSMIAGYTRDGRSDGAIKLLQQME---KEGVKLDVVAITSILHACARSG 366

Query: 250 RLEEAQNLFDTVPVRDEIS----WTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMIS 305
            L+  +++ D +   +  S      +++D Y   G +  A  +F  M  +D ++W  MI 
Sbjct: 367 SLDNGKDVHDYIKANNMESNLFVCNALMDMYAKCGSMEAANSVFSTMVVKDIISWNTMIG 426

Query: 306 GLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESES 365
            L                      P + T + +  A  + + ++ G++IH  +++    S
Sbjct: 427 EL---------------------KPDSRTMACVLPACASLSALERGKEIHGYILRNGYSS 465

Query: 366 DLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESML 425
           D  + N L+ +Y KCGV+  A  +F  + S+DLVSW  M+ G+  HG  NE +  F  M 
Sbjct: 466 DRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMIAGYGMHGYGNEAIATFNEMR 525

Query: 426 ESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKI 485
           ++G  P+ V+F+ IL ACSH+GL+ +GW  F  M + + I+P  EHY  M++LL R G +
Sbjct: 526 DAGIEPDEVSFISILYACSHSGLLEQGWRFFYIMKNDFNIEPKLEHYACMVDLLSRTGNL 585

Query: 486 KEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNI 545
            +A EF+  LP  PD  IWGALL  C     + E+AE  A+R+ EL+P N   +V+L NI
Sbjct: 586 SKAYEFMETLPIAPDATIWGALLCGCRNYH-DIELAEKVAERVFELEPENTGYYVLLANI 644

Query: 546 YAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGD 589
           YA + +  E  +LR  +G +G+RK PGCSW+   G + +F+SG+
Sbjct: 645 YAEAEKWEEVKRLREKIGKQGLRKNPGCSWIEIKGKVNLFVSGN 688



 Score =  135 bits (339), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 88/340 (25%), Positives = 159/340 (46%), Gaps = 50/340 (14%)

Query: 141 MIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRK----- 195
           +++ Y  C  + E   +F+ ME++NV  W  M+S Y + G+ +E  CLF+ M  K     
Sbjct: 140 LVSFYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGK 199

Query: 196 ---------------NVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNS 240
                          +V+SW +MI G+  NG  +  L ++ +M  +   G + ++ +  S
Sbjct: 200 RPESAFELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYL---GIDVDLATIIS 256

Query: 241 MI-----NGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDR 295
           ++     +G +  G+   +  +  +   R   S T ++D Y   G +  A  +F  M +R
Sbjct: 257 VLVGCANSGTLSLGKAVHSLAIKSSFERRINFSNT-LLDMYSKCGDLDGALRVFEKMGER 315

Query: 296 DAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIH 355
           + V+WT+MI+G  ++     A  L  +M   GV       + +  A   + ++D G+ +H
Sbjct: 316 NVVSWTSMIAGYTRDGRSDGAIKLLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVH 375

Query: 356 CVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLAN 415
             +     ES+L + N L+ MYAKCG ++ A ++FS MV +D++SWN+M+          
Sbjct: 376 DYIKANNMESNLFVCNALMDMYAKCGSMEAANSVFSTMVVKDIISWNTMI---------- 425

Query: 416 ETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWEL 455
                          P+S T   +L AC+    + RG E+
Sbjct: 426 -----------GELKPDSRTMACVLPACASLSALERGKEI 454



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 119/494 (24%), Positives = 207/494 (41%), Gaps = 119/494 (24%)

Query: 48  MLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCE---------------- 91
           ++S +   G L E RR+F+ M ++NV  W  M+   A  G   E                
Sbjct: 140 LVSFYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGK 199

Query: 92  ----ARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSM-------PIKNVIS--- 137
               A +LF+++ +R+V+SWNSM+ G + NG       ++  M        +  +IS   
Sbjct: 200 RPESAFELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLV 259

Query: 138 -----------------------------WNAMIAGYVECCMMGEAIVLFEEMEERNVVT 168
                                         N ++  Y +C  +  A+ +FE+M ERNVV+
Sbjct: 260 GCANSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVS 319

Query: 169 WTSMISGYCRAGEVEEGYCLFRRMPRK----NVVSWTAMIGGFAWNGFHKESLLLFIEMK 224
           WTSMI+GY R G  +    L ++M ++    +VV+ T+++   A +G       +   +K
Sbjct: 320 WTSMIAGYTRDGRSDGAIKLLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIK 379

Query: 225 GICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMI----------- 273
               N    N+  CN++++ Y + G +E A ++F T+ V+D ISW +MI           
Sbjct: 380 A---NNMESNLFVCNALMDMYAKCGSMEAANSVFSTMVVKDIISWNTMIGELKPDSRTMA 436

Query: 274 ------------------------DGYLSVGQVSNAY--------------YLFHNMPDR 295
                                   +GY S   V+NA                LF  +P +
Sbjct: 437 CVLPACASLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSK 496

Query: 296 DAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIH 355
           D V+WT MI+G   +    EA   F EMR  G+ P   +F  +  A   +  ++ G +  
Sbjct: 497 DLVSWTVMIAGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRFF 556

Query: 356 CVLMKTESESDLILEN--CLISMYAKCGVIDNAYNIFSNM-VSRDLVSWNSMVMGFSHHG 412
             +MK +   +  LE+  C++ + ++ G +  AY     + ++ D   W +++ G  ++ 
Sbjct: 557 -YIMKNDFNIEPKLEHYACMVDLLSRTGNLSKAYEFMETLPIAPDATIWGALLCGCRNYH 615

Query: 413 LANETLKVFESMLE 426
                 KV E + E
Sbjct: 616 DIELAEKVAERVFE 629



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 37/168 (22%), Positives = 66/168 (39%), Gaps = 52/168 (30%)

Query: 336 SVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVI------------ 383
           SVL   AG  +  D G+++H ++       D  L   L+S YA CG +            
Sbjct: 104 SVLQLCAGLKSFTD-GKKVHSIIKSNSVGVDGALGLKLVSFYATCGDLKEGRRVFDTMEK 162

Query: 384 ---------------------------------------DNAYNIFSNMVSRDLVSWNSM 404
                                                  ++A+ +F  +  RD++SWNSM
Sbjct: 163 KNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGKRPESAFELFDKLCDRDVISWNSM 222

Query: 405 VMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRG 452
           + G+  +GL    L +++ M+  G   +  T + +L  C+++G +S G
Sbjct: 223 ISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCANSGTLSLG 270


>gi|225448607|ref|XP_002274158.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Vitis vinifera]
          Length = 820

 Score =  301 bits (770), Expect = 8e-79,   Method: Compositional matrix adjust.
 Identities = 205/696 (29%), Positives = 330/696 (47%), Gaps = 105/696 (15%)

Query: 4   RNHPKSLVVHLTSSITKY----------SKRGFIDEAKALFQLMPQRN------VVSYNA 47
           RN P+S+ +  T   T+           +++G I EAKA+  L+ + N      +V +N 
Sbjct: 101 RNRPESIGISETYQQTQVQDLIDVLRDCAEKGSIREAKAVHGLVLKSNFEDKDLMVLFNH 160

Query: 48  MLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEM------PE 101
               + +      A  +F+EMP+RNV SWT MI G  + G   +  K F EM      P+
Sbjct: 161 AAHVYSKCSEFRAACGVFDEMPQRNVFSWTVMIVGSTEHGLFFDGFKFFCEMLNSGILPD 220

Query: 102 R--------NVVSWNSMVVGLI-------------------------RNGELNEARKVFN 128
           +        + +  +S+ +G +                         + G + ++  VFN
Sbjct: 221 KFAYSAIIQSCIGLDSLELGKMVHAQIVMRGFATHIFVSTSLLNMYAKLGSIEDSYWVFN 280

Query: 129 SMPIKNVISWNAMIAGYVECCMMGEAIVLFEEME-------------------------- 162
            M   N +SWNAMI+G     +  EA  LF  M+                          
Sbjct: 281 MMTEHNQVSWNAMISGCTSNGLHLEAFDLFVRMKNGACTPNMYTLVSVSKAVGKLVDVNM 340

Query: 163 -------------ERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVS--WTAMIGGF 207
                        E NV+  T++I  Y + G + +   +F        V+  W AMI G+
Sbjct: 341 GKEVQNCASELGIEGNVLVGTALIDMYSKCGSLHDARSVFDTNFINCGVNTPWNAMISGY 400

Query: 208 AWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGY-----IRFGRLEEAQNLFDTVP 262
           + +G  +E+L L+++M   C NG   ++ +  S+ N       ++FGR+     L   + 
Sbjct: 401 SQSGCSQEALELYVQM---CQNGITSDLYTYCSVFNAIAASKSLQFGRVVHGMVLKCGLD 457

Query: 263 VRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFME 322
           +       ++ D Y   G + +   +F  M +RD V+WT +++   Q+ L  EA   F  
Sbjct: 458 LMVVSVNNAIADAYSKCGFLEDVRKVFDRMEERDIVSWTTLVTAYSQSSLGEEALATFCL 517

Query: 323 MRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGV 382
           MR  G  P   TFS +  +  +   ++ GRQ+H +L K   +++  +E+ LI MYAKCG 
Sbjct: 518 MREEGFAPNQFTFSSVLISCASLCFLEYGRQVHGLLCKAGLDTEKCIESALIDMYAKCGS 577

Query: 383 IDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSA 442
           I  A  +F  + + D+VSW +++ G++ HGL  + L++F  M  SG   N+VT L +L A
Sbjct: 578 ITEAGKVFDKISNPDIVSWTAIISGYAQHGLVEDALQLFRRMELSGIKANAVTLLCVLFA 637

Query: 443 CSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHR 502
           CSH G+V  G   F  M D Y + P  EHY  +I+LLGR G++ +A EF+ ++P EP+  
Sbjct: 638 CSHGGMVEEGLFYFQQMEDGYGVVPEMEHYACIIDLLGRVGRLDDAMEFIRKMPMEPNEM 697

Query: 503 IWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDM 562
           +W  LLG C    GN E+ E AA+++L + P  +  +V+L N Y  +G + +   LR  M
Sbjct: 698 VWQTLLGGCRV-HGNVELGEIAARKILSIRPEYSATYVLLSNTYIETGSYEDGLSLRNVM 756

Query: 563 GLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
             +GV+K PG SW+   G +  F SGD+   Q  EI
Sbjct: 757 KDQGVKKEPGYSWISVKGRVHKFYSGDQQHPQKKEI 792


>gi|27817913|dbj|BAC55678.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|37806252|dbj|BAC99769.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
          Length = 613

 Score =  301 bits (770), Expect = 8e-79,   Method: Compositional matrix adjust.
 Identities = 170/489 (34%), Positives = 271/489 (55%), Gaps = 13/489 (2%)

Query: 111 VVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECC-MMGEAIVLFEEMEERNVVTW 169
           V   +R G+L  A + F S P K   ++N ++AGY      + +A  LF+ +   + V++
Sbjct: 24  VAAAVRRGDLTGAEEAFASTPRKTTATYNCLLAGYARALGRLADARHLFDRIPTPDAVSY 83

Query: 170 TSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDN 229
            +++S +  +G+ +    LF  MP ++VVSW  M+ G + +G  +E+  +F+ M      
Sbjct: 84  NTLLSCHFASGDADGARRLFASMPVRDVVSWNTMVSGLSKSGAVEEAKAVFLAMPVR--- 140

Query: 230 GNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVR-DEISWTSMIDGYLSVGQVSNAYYL 288
               N  S N+M++G+     +  A+  F   P + D + WT+M+ GY+ +G V  A   
Sbjct: 141 ----NSVSWNAMVSGFACSRDMSAAEEWFRNAPEKGDAVLWTAMVSGYMDIGNVVKAIEY 196

Query: 289 FHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEM-RAHGVPPLNATFS-VLFGAAGATA 346
           F  MP R+ V+W A+++G V+N    +A  LF  M R   V P  +T S VL G +  +A
Sbjct: 197 FEAMPVRNLVSWNAVVAGYVKNSHADDALRLFRTMVREANVQPNASTLSSVLLGCSNLSA 256

Query: 347 NIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVM 406
            +  G+QIH   MK     +L +   L+SMY KCG + +A  +F  M +RD+V+WN+M+ 
Sbjct: 257 -LGFGKQIHQWCMKLPLSRNLTVGTSLVSMYCKCGDLSSACKLFGEMHTRDVVAWNAMIS 315

Query: 407 GFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQ 466
           G++ HG   E + +FE M + G  PN +TF+ +L+AC H GL   G   F  M ++Y I+
Sbjct: 316 GYAQHGDGKEAINLFERMKDEGVEPNWITFVAVLTACIHTGLCDFGIRCFEGMQELYGIE 375

Query: 467 PGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAK 526
           P  +HY  M++LL RAGK++ A + +  +PFEP    +G LL AC   + N E AE AA 
Sbjct: 376 PRVDHYSCMVDLLCRAGKLERAVDLIRSMPFEPHPSAYGTLLAACRVYK-NLEFAELAAG 434

Query: 527 RLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFL 586
           +L+E DP +A A+V L NIYA + +  +  ++R  M    V K PG SW+   G +  F 
Sbjct: 435 KLIEKDPQSAGAYVQLANIYAGANQWDDVSRVRRWMKDNAVVKTPGYSWIEIKGVMHEFR 494

Query: 587 SGDKIPAQV 595
           S D++  Q+
Sbjct: 495 SNDRLHPQL 503



 Score =  200 bits (509), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 132/403 (32%), Positives = 208/403 (51%), Gaps = 20/403 (4%)

Query: 2   SERNHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQN-GRLSE 60
           S R+H  SL    T ++    +RG +  A+  F   P++   +YN +L+G+ +  GRL++
Sbjct: 11  SARSHTCSLS---TVAVAAAVRRGDLTGAEEAFASTPRKTTATYNCLLAGYARALGRLAD 67

Query: 61  ARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGEL 120
           AR LF+ +P  + VS+  ++     +G    AR+LF  MP R+VVSWN+MV GL ++G +
Sbjct: 68  ARHLFDRIPTPDAVSYNTLLSCHFASGDADGARRLFASMPVRDVVSWNTMVSGLSKSGAV 127

Query: 121 NEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEER-NVVTWTSMISGYCRA 179
            EA+ VF +MP++N +SWNAM++G+     M  A   F    E+ + V WT+M+SGY   
Sbjct: 128 EEAKAVFLAMPVRNSVSWNAMVSGFACSRDMSAAEEWFRNAPEKGDAVLWTAMVSGYMDI 187

Query: 180 GEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCN 239
           G V +    F  MP +N+VSW A++ G+  N    ++L LF  M  + +     N  + +
Sbjct: 188 GNVVKAIEYFEAMPVRNLVSWNAVVAGYVKNSHADDALRLFRTM--VREANVQPNASTLS 245

Query: 240 SMINGYIRFGRLEEAQNLFD---TVPV-RDEISWTSMIDGYLSVGQVSNAYYLFHNMPDR 295
           S++ G      L   + +      +P+ R+    TS++  Y   G +S+A  LF  M  R
Sbjct: 246 SVLLGCSNLSALGFGKQIHQWCMKLPLSRNLTVGTSLVSMYCKCGDLSSACKLFGEMHTR 305

Query: 296 DAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIH 355
           D VAW AMISG  Q+    EA  LF  M+  GV P   TF  +  A   T   D G  I 
Sbjct: 306 DVVAWNAMISGYAQHGDGKEAINLFERMKDEGVEPNWITFVAVLTACIHTGLCDFG--IR 363

Query: 356 CV-----LMKTESESDLILENCLISMYAKCGVIDNAYNIFSNM 393
           C      L   E   D    +C++ +  + G ++ A ++  +M
Sbjct: 364 CFEGMQELYGIEPRVDHY--SCMVDLLCRAGKLERAVDLIRSM 404



 Score = 60.1 bits (144), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 48/133 (36%), Positives = 67/133 (50%), Gaps = 19/133 (14%)

Query: 15  TSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMP----E 70
           TS ++ Y K G +  A  LF  M  R+VV++NAM+SG+ Q+G   EA  LFE M     E
Sbjct: 280 TSLVSMYCKCGDLSSACKLFGEMHTRDVVAWNAMISGYAQHGDGKEAINLFERMKDEGVE 339

Query: 71  RNVVSWTAMIC-----GLADAGRVCEARKLFEEMPE-----RNVVSWNSMVVGLIRNGEL 120
            N +++ A++      GL D G  C     FE M E       V  ++ MV  L R G+L
Sbjct: 340 PNWITFVAVLTACIHTGLCDFGIRC-----FEGMQELYGIEPRVDHYSCMVDLLCRAGKL 394

Query: 121 NEARKVFNSMPIK 133
             A  +  SMP +
Sbjct: 395 ERAVDLIRSMPFE 407


>gi|302760807|ref|XP_002963826.1| hypothetical protein SELMODRAFT_79356 [Selaginella moellendorffii]
 gi|300169094|gb|EFJ35697.1| hypothetical protein SELMODRAFT_79356 [Selaginella moellendorffii]
          Length = 535

 Score =  301 bits (770), Expect = 8e-79,   Method: Compositional matrix adjust.
 Identities = 167/520 (32%), Positives = 278/520 (53%), Gaps = 15/520 (2%)

Query: 53  LQN--GRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSM 110
           LQN  G + EAR+ F+ MP ++ VSWT M+   A  G + +A+ LFE +P +++   N+M
Sbjct: 9   LQNLCGNVQEARKFFDSMPLQDSVSWTIMVSAYAQGGHIEQAKNLFESLPWKSLACENAM 68

Query: 111 VVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWT 170
           +     NG+L  A+ VF+ M  ++V+SW  MI  Y +     +A  LF+  E +N+++WT
Sbjct: 69  LQAYSLNGDLENAKLVFDRMTKRDVVSWTTMIGAYAQNGYAFDAKSLFDRFERKNIISWT 128

Query: 171 SMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNG 230
           +M+  Y +    +    +F RMP+ +V SW  ++  +A NG  + + + F  M       
Sbjct: 129 AMVHAYSQNKSFDLAREMFERMPQHDVFSWNILLSAYAHNGHLESAKIAFERMP------ 182

Query: 231 NNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFH 290
            + +V + NS+I  + + G+LEEA+ LF  +P  +  +W  MI        +  A  LF 
Sbjct: 183 -SRDVVAWNSIIAFFSQKGKLEEAKELFHLMPEPNTAAWNVMIQANAQAWHLDVAKGLFD 241

Query: 291 NMPDRDAVAWTAMISGLVQ----NELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATA 346
            MP RD ++WT +++        +     A  +F  M  HGV P + T+  +F A    A
Sbjct: 242 QMPSRDVISWTTLMNSYADMSNLDGCQESAMDVFRLMDLHGVSPDSVTYIAIFDACSRIA 301

Query: 347 NIDLGRQ-IHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMV 405
           N + G   I  ++     +  +++ N  ++MY + G+   A+++F  M  RD VSWN+M+
Sbjct: 302 NAEEGSAFIASIVHPGILQDSVVVGNAALTMYGRSGLAAGAWSVFQQMPVRDSVSWNAML 361

Query: 406 MGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKI 465
             F+ +G     L VF +M   G  P+ +TF+ +LSACSHAGL+ R    F+++   Y +
Sbjct: 362 TAFARNGHGEAALDVFLAMELEGLVPDIITFVNVLSACSHAGLLHRARGYFHSISRDYGL 421

Query: 466 QPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAA 525
            P  +HYV + +LL R+G++ EAEE V  +PFEP++  W ALLGAC    G+      AA
Sbjct: 422 TPIYDHYVCLTDLLARSGRLVEAEELVNSMPFEPNYEAWMALLGACR-SHGDVRRGNRAA 480

Query: 526 KRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLK 565
              ++ D      +++L ++YA +G   +   +R  M  K
Sbjct: 481 GFFVQADVDAESPYILLSHLYAEAGSKDDVLVIRKAMRRK 520



 Score =  151 bits (382), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 97/339 (28%), Positives = 167/339 (49%), Gaps = 19/339 (5%)

Query: 8   KSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEE 67
           K  VV  T+ I  Y++ G+  +AK+LF    ++N++S+ AM+  + QN     AR +FE 
Sbjct: 90  KRDVVSWTTMIGAYAQNGYAFDAKSLFDRFERKNIISWTAMVHAYSQNKSFDLAREMFER 149

Query: 68  MPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVF 127
           MP+ +V SW  ++   A  G +  A+  FE MP R+VV+WNS++    + G+L EA+++F
Sbjct: 150 MPQHDVFSWNILLSAYAHNGHLESAKIAFERMPSRDVVAWNSIIAFFSQKGKLEEAKELF 209

Query: 128 NSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEV----E 183
           + MP  N  +WN MI    +   +  A  LF++M  R+V++WT++++ Y     +    E
Sbjct: 210 HLMPEPNTAAWNVMIQANAQAWHLDVAKGLFDQMPSRDVISWTTLMNSYADMSNLDGCQE 269

Query: 184 EGYCLFRRMPRKNV----VSWTAMIGGFA--WNGFHKESLLLFIEMKGICDNGNNCNVQS 237
               +FR M    V    V++ A+    +   N     + +  I   GI  +    +V  
Sbjct: 270 SAMDVFRLMDLHGVSPDSVTYIAIFDACSRIANAEEGSAFIASIVHPGILQD----SVVV 325

Query: 238 CNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDR-- 295
            N+ +  Y R G    A ++F  +PVRD +SW +M+  +   G    A  +F  M     
Sbjct: 326 GNAALTMYGRSGLAAGAWSVFQQMPVRDSVSWNAMLTAFARNGHGEAALDVFLAMELEGL 385

Query: 296 --DAVAWTAMISGLVQNELFVEATYLFMEM-RAHGVPPL 331
             D + +  ++S      L   A   F  + R +G+ P+
Sbjct: 386 VPDIITFVNVLSACSHAGLLHRARGYFHSISRDYGLTPI 424



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 85/314 (27%), Positives = 146/314 (46%), Gaps = 47/314 (14%)

Query: 7   PKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFE 66
           P   VV   S I  +S++G ++EAK LF LMP+ N  ++N M+    Q   L  A+ LF+
Sbjct: 182 PSRDVVAWNSIIAFFSQKGKLEEAKELFHLMPEPNTAAWNVMIQANAQAWHLDVAKGLFD 241

Query: 67  EMPERNVVSWTAMICGLADAGRV--CE--ARKLFEEMPERNVVSWNSMVVGLIRNGELNE 122
           +MP R+V+SWT ++   AD   +  C+  A  +F  M    V   +   +          
Sbjct: 242 QMPSRDVISWTTLMNSYADMSNLDGCQESAMDVFRLMDLHGVSPDSVTYIA--------- 292

Query: 123 ARKVFNSMP-IKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGE 181
              +F++   I N    +A IA  V   ++ ++           VV   + ++ Y R+G 
Sbjct: 293 ---IFDACSRIANAEEGSAFIASIVHPGILQDS-----------VVVGNAALTMYGRSGL 338

Query: 182 VEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFI--EMKGIC-DNGNNCNVQSC 238
               + +F++MP ++ VSW AM+  FA NG  + +L +F+  E++G+  D     NV S 
Sbjct: 339 AAGAWSVFQQMPVRDSVSWNAMLTAFARNGHGEAALDVFLAMELEGLVPDIITFVNVLSA 398

Query: 239 NSMINGYIRFGRLEEAQNLFDTV-------PVRDEISWTSMIDGYLSVGQVSNAYYLFHN 291
            S        G L  A+  F ++       P+ D   +  + D     G++  A  L ++
Sbjct: 399 CS------HAGLLHRARGYFHSISRDYGLTPIYDH--YVCLTDLLARSGRLVEAEELVNS 450

Query: 292 MP-DRDAVAWTAMI 304
           MP + +  AW A++
Sbjct: 451 MPFEPNYEAWMALL 464


>gi|356547226|ref|XP_003542017.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g37170-like [Glycine max]
          Length = 693

 Score =  301 bits (770), Expect = 8e-79,   Method: Compositional matrix adjust.
 Identities = 173/523 (33%), Positives = 279/523 (53%), Gaps = 8/523 (1%)

Query: 83  LADAGRVCEARKLFEEMPER-NVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISW--- 138
           L    RV EA +L      R +   +++++   +R+  L   R+V       N +     
Sbjct: 65  LCQQKRVKEAVELLHRTDHRPSARVYSTLIAACVRHRALELGRRVHAHTKASNFVPGVFI 124

Query: 139 -NAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNV 197
            N ++  Y +C  + +A +LF+EM  R++ +W +MI GY + G +E+   LF  MP+++ 
Sbjct: 125 SNRLLDMYAKCGSLVDAQMLFDEMGHRDLCSWNTMIVGYAKLGRLEQARKLFDEMPQRDN 184

Query: 198 VSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRL--EEAQ 255
            SW A I G+  +   +E+L LF  M+    + +N    S     +  I   RL  E   
Sbjct: 185 FSWNAAISGYVTHNQPREALELFRVMQRHERSSSNKFTLSSALAASAAIPCLRLGKEIHG 244

Query: 256 NLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVE 315
            L  T    DE+ W++++D Y   G +  A  +F  M DRD V+WT MI    ++    E
Sbjct: 245 YLIRTELNLDEVVWSALLDLYGKCGSLDEARGIFDQMKDRDVVSWTTMIHRCFEDGRREE 304

Query: 316 ATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLIS 375
              LF ++   GV P   TF+ +  A    A   LG+++H  +M    +      + L+ 
Sbjct: 305 GFLLFRDLMQSGVRPNEYTFAGVLNACADHAAEHLGKEVHGYMMHAGYDPGSFAISALVH 364

Query: 376 MYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVT 435
           MY+KCG    A  +F+ M   DLVSW S+++G++ +G  +E L  FE +L+SGT P+ VT
Sbjct: 365 MYSKCGNTRVARRVFNEMHQPDLVSWTSLIVGYAQNGQPDEALHFFELLLQSGTKPDQVT 424

Query: 436 FLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRL 495
           ++G+LSAC+HAGLV +G E F+++ + + +    +HY  +I+LL R+G+ KEAE  +  +
Sbjct: 425 YVGVLSACTHAGLVDKGLEYFHSIKEKHGLMHTADHYACVIDLLARSGRFKEAENIIDNM 484

Query: 496 PFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEE 555
           P +PD  +W +LLG C    GN E+A+ AAK L E++P N   ++ L NIYA +G   E 
Sbjct: 485 PVKPDKFLWASLLGGCRI-HGNLELAKRAAKALYEIEPENPATYITLANIYANAGLWSEV 543

Query: 556 HKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
             +R DM   G+ K PG SW+     + +FL GD    + ++I
Sbjct: 544 ANVRKDMDNMGIVKKPGKSWIEIKRQVHVFLVGDTSHPKTSDI 586



 Score =  145 bits (367), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 114/428 (26%), Positives = 194/428 (45%), Gaps = 35/428 (8%)

Query: 46  NAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVV 105
           N +L  + + G L +A+ LF+EM  R++ SW  MI G A  GR+ +ARKLF+EMP+R+  
Sbjct: 126 NRLLDMYAKCGSLVDAQMLFDEMGHRDLCSWNTMIVGYAKLGRLEQARKLFDEMPQRDNF 185

Query: 106 SWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMI-------AGYVECCMMGEAIVLF 158
           SWN+ + G + + +  EA ++F  M      S N          +  + C  +G+ I  +
Sbjct: 186 SWNAAISGYVTHNQPREALELFRVMQRHERSSSNKFTLSSALAASAAIPCLRLGKEIHGY 245

Query: 159 EEMEERNV--VTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKES 216
               E N+  V W++++  Y + G ++E   +F +M  ++VVSWT MI     +G  +E 
Sbjct: 246 LIRTELNLDEVVWSALLDLYGKCGSLDEARGIFDQMKDRDVVSWTTMIHRCFEDGRREEG 305

Query: 217 LLLFIEM--KGICDNG-------NNCNVQSCNSM---INGYIRFGRLEEAQNLFDTVPVR 264
            LLF ++   G+  N        N C   +   +   ++GY+     +            
Sbjct: 306 FLLFRDLMQSGVRPNEYTFAGVLNACADHAAEHLGKEVHGYMMHAGYDPGS--------- 356

Query: 265 DEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMR 324
              + ++++  Y   G    A  +F+ M   D V+WT++I G  QN    EA + F  + 
Sbjct: 357 --FAISALVHMYSKCGNTRVARRVFNEMHQPDLVSWTSLIVGYAQNGQPDEALHFFELLL 414

Query: 325 AHGVPPLNATFSVLFGAAGATANIDLGRQ-IHCVLMKTESESDLILENCLISMYAKCGVI 383
             G  P   T+  +  A      +D G +  H +  K           C+I + A+ G  
Sbjct: 415 QSGTKPDQVTYVGVLSACTHAGLVDKGLEYFHSIKEKHGLMHTADHYACVIDLLARSGRF 474

Query: 384 DNAYNIFSNM-VSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSA 442
             A NI  NM V  D   W S++ G   HG      +  +++ E     N  T++ + + 
Sbjct: 475 KEAENIIDNMPVKPDKFLWASLLGGCRIHGNLELAKRAAKALYEIEPE-NPATYITLANI 533

Query: 443 CSHAGLVS 450
            ++AGL S
Sbjct: 534 YANAGLWS 541



 Score = 95.5 bits (236), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 80/342 (23%), Positives = 138/342 (40%), Gaps = 86/342 (25%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPER------ 71
           I  Y+K G +++A+ LF  MPQR+  S+NA +SG++ + +  EA  LF  M         
Sbjct: 160 IVGYAKLGRLEQARKLFDEMPQRDNFSWNAAISGYVTHNQPREALELFRVMQRHERSSSN 219

Query: 72  ----------------------------------NVVSWTAMICGLADAGRVCEARKLFE 97
                                             + V W+A++      G + EAR +F+
Sbjct: 220 KFTLSSALAASAAIPCLRLGKEIHGYLIRTELNLDEVVWSALLDLYGKCGSLDEARGIFD 279

Query: 98  EMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVL 157
           +M +R+VVSW +M+     +G   E   +F  +    V       AG +  C    A  L
Sbjct: 280 QMKDRDVVSWTTMIHRCFEDGRREEGFLLFRDLMQSGVRPNEYTFAGVLNACADHAAEHL 339

Query: 158 FEEME--------ERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAW 209
            +E+         +      ++++  Y + G       +F  M + ++VSWT++I G+A 
Sbjct: 340 GKEVHGYMMHAGYDPGSFAISALVHMYSKCGNTRVARRVFNEMHQPDLVSWTSLIVGYAQ 399

Query: 210 NGFHKESLLLF---------------------IEMKGICDNG--------------NNCN 234
           NG   E+L  F                         G+ D G              +  +
Sbjct: 400 NGQPDEALHFFELLLQSGTKPDQVTYVGVLSACTHAGLVDKGLEYFHSIKEKHGLMHTAD 459

Query: 235 VQSCNSMINGYIRFGRLEEAQNLFDTVPVR-DEISWTSMIDG 275
             +C  +I+   R GR +EA+N+ D +PV+ D+  W S++ G
Sbjct: 460 HYAC--VIDLLARSGRFKEAENIIDNMPVKPDKFLWASLLGG 499



 Score = 60.1 bits (144), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 45/183 (24%), Positives = 89/183 (48%), Gaps = 19/183 (10%)

Query: 14  LTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEM----P 69
           +++ +  YSK G    A+ +F  M Q ++VS+ +++ G+ QNG+  EA   FE +     
Sbjct: 359 ISALVHMYSKCGNTRVARRVFNEMHQPDLVSWTSLIVGYAQNGQPDEALHFFELLLQSGT 418

Query: 70  ERNVVSWTAMICGLADAGRVCEARKLFEEMPER----NVVSWNSMVVGLI-RNGELNEAR 124
           + + V++  ++     AG V +  + F  + E+    +     + V+ L+ R+G   EA 
Sbjct: 419 KPDQVTYVGVLSACTHAGLVDKGLEYFHSIKEKHGLMHTADHYACVIDLLARSGRFKEAE 478

Query: 125 KVFNSMPIK-NVISWNAMIAGYVECCMMG------EAIVLFEEMEERNVVTWTSMISGYC 177
            + ++MP+K +   W +++ G   C + G       A     E+E  N  T+ ++ + Y 
Sbjct: 479 NIIDNMPVKPDKFLWASLLGG---CRIHGNLELAKRAAKALYEIEPENPATYITLANIYA 535

Query: 178 RAG 180
            AG
Sbjct: 536 NAG 538



 Score = 42.7 bits (99), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 36/130 (27%), Positives = 63/130 (48%), Gaps = 10/130 (7%)

Query: 11  VVHLTSSITKYSKRGFIDEAKALFQLMPQR----NVVSYNAMLSGFLQNGRLSEARRLFE 66
           +V  TS I  Y++ G  DEA   F+L+ Q     + V+Y  +LS     G + +    F 
Sbjct: 387 LVSWTSLIVGYAQNGQPDEALHFFELLLQSGTKPDQVTYVGVLSACTHAGLVDKGLEYFH 446

Query: 67  EMPERNVVSWTA-----MICGLADAGRVCEARKLFEEMPER-NVVSWNSMVVGLIRNGEL 120
            + E++ +  TA     +I  LA +GR  EA  + + MP + +   W S++ G   +G L
Sbjct: 447 SIKEKHGLMHTADHYACVIDLLARSGRFKEAENIIDNMPVKPDKFLWASLLGGCRIHGNL 506

Query: 121 NEARKVFNSM 130
             A++   ++
Sbjct: 507 ELAKRAAKAL 516


>gi|225460338|ref|XP_002280412.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g13880-like [Vitis vinifera]
          Length = 802

 Score =  301 bits (770), Expect = 8e-79,   Method: Compositional matrix adjust.
 Identities = 204/630 (32%), Positives = 312/630 (49%), Gaps = 66/630 (10%)

Query: 21  YSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMP------ERNVV 74
           Y K G  D AK LF  MP+RNVVS+N+++SG+ Q G   E   LF+E        ++   
Sbjct: 64  YCKCGETDVAKKLFDRMPKRNVVSWNSLISGYTQMGFYHEVMNLFKEARMSDLRLDKFTF 123

Query: 75  SWTAMICG-----------------------------LAD----AGRVCEARKLFEEMPE 101
           S    +CG                             L D     GR+  AR +FE   E
Sbjct: 124 SNALSVCGRTLDLRLGRLIHALITVSGLGGPVLLTNSLIDMYCKCGRIDWARLVFESADE 183

Query: 102 RNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGY------------VECC 149
            + VSWNS++ G +R G  +E  ++   M +++ ++ N+   G             +EC 
Sbjct: 184 LDSVSWNSLIAGYVRIGSNDEMLRLLVKM-LRHGLNLNSYALGSALKACGSNFSSSIECG 242

Query: 150 MM--GEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGF 207
            M  G A+ L  +++   VV  T+++  Y + G++E+   +F+ MP  NVV + AMI GF
Sbjct: 243 KMLHGCAVKLGLDLD---VVVGTALLDTYAKIGDLEDATKIFKLMPDPNVVMYNAMIAGF 299

Query: 208 AW-----NGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRF--GRLEEAQNLFDT 260
                  + F  E++ LF EM+      +     S     +    F  G+   AQ +F  
Sbjct: 300 LQMETMADEFANEAMYLFFEMQSRGMKPSEFTFSSILKACSTIEAFECGKQIHAQ-IFKY 358

Query: 261 VPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLF 320
               DE    ++++ Y   G + +    FH+ P  D V+WT++I G VQN  F     LF
Sbjct: 359 NLQSDEFIGNALVELYSLSGSIEDGLKCFHSTPKLDVVSWTSLIVGHVQNGQFEGGLTLF 418

Query: 321 MEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKC 380
            E+   G  P   T S++  A    A +  G QIH   +KT   +  I++N  I MYAKC
Sbjct: 419 HELLFSGRKPDEFTISIMLSACANLAAVKSGEQIHAYAIKTGIGNFTIIQNSQICMYAKC 478

Query: 381 GVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGIL 440
           G ID+A   F    + D+VSW+ M+   + HG A E + +FE M  SG  PN +TFLG+L
Sbjct: 479 GDIDSANMTFKETKNPDIVSWSVMISSNAQHGCAKEAVDLFELMKGSGIAPNHITFLGVL 538

Query: 441 SACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPD 500
            ACSH GLV  G   F  M   + I P  +H   +++LLGRAG++ EAE F++   FE D
Sbjct: 539 VACSHGGLVEEGLRYFEIMKKDHGITPNVKHSACIVDLLGRAGRLAEAESFIMDSGFEGD 598

Query: 501 HRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRM 560
             +W +LL AC   +   +  +  A+R++EL+P  A ++V+L NIY  +G  +   ++R 
Sbjct: 599 PVMWRSLLSACRVHKAT-DTGKRVAERVIELEPEAAASYVLLYNIYNDAGIQMPATEIRN 657

Query: 561 DMGLKGVRKVPGCSWLMRNGGIQMFLSGDK 590
            M  +GV+K PG SW+     +  F++GD+
Sbjct: 658 LMKDRGVKKEPGLSWIEVGNVVHSFVAGDR 687



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 62/205 (30%), Positives = 91/205 (44%), Gaps = 31/205 (15%)

Query: 239 NSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAV 298
           N+++  Y + G  + A+ LFD +P R+ +SW S+I GY  +G                  
Sbjct: 58  NNLLYMYCKCGETDVAKKLFDRMPKRNVVSWNSLISGYTQMG------------------ 99

Query: 299 AWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVL 358
                         + E   LF E R   +     TFS      G T ++ LGR IH ++
Sbjct: 100 -------------FYHEVMNLFKEARMSDLRLDKFTFSNALSVCGRTLDLRLGRLIHALI 146

Query: 359 MKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETL 418
             +     ++L N LI MY KCG ID A  +F +    D VSWNS++ G+   G  +E L
Sbjct: 147 TVSGLGGPVLLTNSLIDMYCKCGRIDWARLVFESADELDSVSWNSLIAGYVRIGSNDEML 206

Query: 419 KVFESMLESGTHPNSVTFLGILSAC 443
           ++   ML  G + NS      L AC
Sbjct: 207 RLLVKMLRHGLNLNSYALGSALKAC 231



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 55/185 (29%), Positives = 89/185 (48%), Gaps = 4/185 (2%)

Query: 327 GVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNA 386
           G+P  + T++ L   +  T ++  G+  H  ++KT  +  L L N L+ MY KCG  D A
Sbjct: 14  GLPLDSVTYTKLVQCSTRTGSLIHGKLAHMHMIKTCFKPCLFLLNNLLYMYCKCGETDVA 73

Query: 387 YNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHA 446
             +F  M  R++VSWNS++ G++  G  +E + +F+    S    +  TF   LS C   
Sbjct: 74  KKLFDRMPKRNVVSWNSLISGYTQMGFYHEVMNLFKEARMSDLRLDKFTFSNALSVCGRT 133

Query: 447 GLVSRGWELFNAMFDVYKIQPGPEHYV-SMINLLGRAGKIKEAEEFVLRLPFEPDHRIWG 505
            L  R   L +A+  V  +  GP     S+I++  + G+I  A   V     E D   W 
Sbjct: 134 -LDLRLGRLIHALITVSGLG-GPVLLTNSLIDMYCKCGRIDWA-RLVFESADELDSVSWN 190

Query: 506 ALLGA 510
           +L+  
Sbjct: 191 SLIAG 195


>gi|347954526|gb|AEP33763.1| organelle transcript processing 82, partial [Isatis tinctoria]
          Length = 671

 Score =  301 bits (770), Expect = 9e-79,   Method: Compositional matrix adjust.
 Identities = 187/559 (33%), Positives = 298/559 (53%), Gaps = 26/559 (4%)

Query: 58  LSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPE----RNVVSWNSMVVG 113
           L  A  +FE + E N + W  MI G A +     +  L+  M       N  ++  ++  
Sbjct: 14  LPYATSVFETIQEPNQLIWNTMIRGHALSSDPVSSLTLYVCMVSLGLLPNSYTFPFLLKS 73

Query: 114 LIRNGELNEARKVFNSMPIK-----NVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVT 168
             ++    E +++   + +K     ++    ++I+ YV+   + +A  +F+    R+VV+
Sbjct: 74  CAKSKTFTEGQQIHGQV-LKLGFDLDLYVHTSLISMYVQNWRLEDAYKVFDRSSHRDVVS 132

Query: 169 WTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGI-- 226
           +T++I+GY   G++     LF  +P K+VVSW AMI G+A  G +KE+L LF EM  +  
Sbjct: 133 YTALITGYASRGDIRSAQKLFDEIPVKDVVSWNAMISGYAETGCYKEALELFEEMMKMNV 192

Query: 227 -CDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWT-SMIDGYLSVGQVSN 284
             D      V S  +  +G I  GR  +  +  D       +    ++ID Y   G+V  
Sbjct: 193 RPDESTYVTVLSACAH-SGSIELGR--QVHSWVDDHGFDSNLKIVNALIDLYSKCGEVET 249

Query: 285 AYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGA 344
           A  LF  +  +D ++W  +I G     L+ EA  LF EM   G  P + T   +  A   
Sbjct: 250 ACGLFQGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSVLPACAH 309

Query: 345 TANIDLGRQIHCVLMK-----TESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLV 399
              ID+GR IH  + K     T + S   L   LI MYAKCG I+ A+ +F++M+ + L 
Sbjct: 310 LGAIDIGRWIHVYIDKRLKGVTNASS---LRTSLIDMYAKCGDIEAAHQVFNSMLHKSLS 366

Query: 400 SWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAM 459
           SWN+M+ GF+ HG A+ +  +F  M + G  P+ +TF+G+LSACSH+G++  G  +F +M
Sbjct: 367 SWNAMIFGFAMHGRADASFDLFSRMRKIGIEPDDITFVGLLSACSHSGMLDLGRHIFRSM 426

Query: 460 FDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAE 519
              YK+ P  EHY  MI+LLG +G  KEAEE +  +  EPD  IW +LL AC    GN E
Sbjct: 427 TQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINTMEMEPDGVIWCSLLKACKM-HGNVE 485

Query: 520 IAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRN 579
           +AE  A+ L++++P N  ++++L NIYA++GR  +  ++R  +  K ++KVPGCS +  +
Sbjct: 486 LAESFAQNLIKIEPENPSSYILLSNIYASAGRWEDVARIRALLNGKCMKKVPGCSSIEVD 545

Query: 580 GGIQMFLSGDKIPAQVAEI 598
             +  F+ GDK   Q  EI
Sbjct: 546 SVVFEFVVGDKFHPQNREI 564



 Score =  161 bits (408), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 113/392 (28%), Positives = 189/392 (48%), Gaps = 27/392 (6%)

Query: 41  NVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMP 100
           ++  + +++S ++QN RL +A ++F+    R+VVS+TA+I G A  G +  A+KLF+E+P
Sbjct: 98  DLYVHTSLISMYVQNWRLEDAYKVFDRSSHRDVVSYTALITGYASRGDIRSAQKLFDEIP 157

Query: 101 ERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEE 160
            ++VVSWN+M+ G    G   EA ++F  M   NV    +     +  C    +I L  +
Sbjct: 158 VKDVVSWNAMISGYAETGCYKEALELFEEMMKMNVRPDESTYVTVLSACAHSGSIELGRQ 217

Query: 161 ME--------ERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGF 212
           +         + N+    ++I  Y + GEVE    LF+ +  K+V+SW  +IGG+     
Sbjct: 218 VHSWVDDHGFDSNLKIVNALIDLYSKCGEVETACGLFQGLSYKDVISWNTLIGGYTHMNL 277

Query: 213 HKESLLLFIEMKGICDNGNNCNVQS----CNSMINGYIRFGRL------EEAQNLFDTVP 262
           +KE+LLLF EM    +  N+  + S    C  +  G I  GR       +  + + +   
Sbjct: 278 YKEALLLFQEMLRSGETPNDVTMLSVLPACAHL--GAIDIGRWIHVYIDKRLKGVTNASS 335

Query: 263 VRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFME 322
           +R     TS+ID Y   G +  A+ +F++M  +   +W AMI G   +     +  LF  
Sbjct: 336 LR-----TSLIDMYAKCGDIEAAHQVFNSMLHKSLSSWNAMIFGFAMHGRADASFDLFSR 390

Query: 323 MRAHGVPPLNATFSVLFGAAGATANIDLGRQI-HCVLMKTESESDLILENCLISMYAKCG 381
           MR  G+ P + TF  L  A   +  +DLGR I   +    +    L    C+I +    G
Sbjct: 391 MRKIGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTQDYKMTPKLEHYGCMIDLLGHSG 450

Query: 382 VIDNAYNIFSNM-VSRDLVSWNSMVMGFSHHG 412
           +   A  + + M +  D V W S++     HG
Sbjct: 451 LFKEAEEMINTMEMEPDGVIWCSLLKACKMHG 482



 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 92/298 (30%), Positives = 136/298 (45%), Gaps = 81/298 (27%)

Query: 9   SLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEM 68
            L VH TS I+ Y +   +++A  +F     R+VVSY A+++G+   G +  A++LF+E+
Sbjct: 98  DLYVH-TSLISMYVQNWRLEDAYKVFDRSSHRDVVSYTALITGYASRGDIRSAQKLFDEI 156

Query: 69  PERNVVSWTAMICGLADAGRVCEARKLFEEM------PE--------------------R 102
           P ++VVSW AMI G A+ G   EA +LFEEM      P+                    R
Sbjct: 157 PVKDVVSWNAMISGYAETGCYKEALELFEEMMKMNVRPDESTYVTVLSACAHSGSIELGR 216

Query: 103 NVVSW-------------NSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECC 149
            V SW             N+++    + GE+  A  +F  +  K+VISWN +I GY    
Sbjct: 217 QVHSWVDDHGFDSNLKIVNALIDLYSKCGEVETACGLFQGLSYKDVISWNTLIGGYTHMN 276

Query: 150 MMGEAIVLFEEM----EERNVVT------------------W------------------ 169
           +  EA++LF+EM    E  N VT                  W                  
Sbjct: 277 LYKEALLLFQEMLRSGETPNDVTMLSVLPACAHLGAIDIGRWIHVYIDKRLKGVTNASSL 336

Query: 170 -TSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGI 226
            TS+I  Y + G++E  + +F  M  K++ SW AMI GFA +G    S  LF  M+ I
Sbjct: 337 RTSLIDMYAKCGDIEAAHQVFNSMLHKSLSSWNAMIFGFAMHGRADASFDLFSRMRKI 394


>gi|359492783|ref|XP_002278486.2| PREDICTED: pentatricopeptide repeat-containing protein At3g21470
           [Vitis vinifera]
          Length = 575

 Score =  301 bits (770), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 167/462 (36%), Positives = 260/462 (56%), Gaps = 16/462 (3%)

Query: 125 KVFNSMPIKNVISWNAMIAG-----YVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRA 179
           K  ++  IKN + ++ MI       Y +C  + ++  +F+ M ERN VTW +MI GY   
Sbjct: 114 KALHAESIKNGVDFDVMIGTSLVCMYAKCGNVVDSRKVFDYMPERNAVTWNAMICGYLGN 173

Query: 180 GEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCN 239
           G+ +    LF +M  +  V+W  MI GFA +G  + +   F ++     N     V +  
Sbjct: 174 GDSKSAVLLFEKMSIRTAVTWIEMIDGFARSGDTETARRFFDDVPSELRN-----VVTWT 228

Query: 240 SMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVA 299
            M++GY R   +E A+ +F+ +P R+  +W+SMI GY   G V  A  +F  +P R+ V 
Sbjct: 229 VMVDGYARNAEMEAAREVFEGMPQRNFFAWSSMISGYCKKGNVKEARSIFDRIPVRNLVN 288

Query: 300 WTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLM 359
           W ++ISG  QN    EA   F +M+A G  P   T + +  A      +D G++IH ++ 
Sbjct: 289 WNSLISGYAQNGFSEEALEAFGKMQAEGFEPDEVTIASVLSACSQLGLLDAGKKIHHMMN 348

Query: 360 KTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLK 419
               + +  + N L+ MYAKCG + NA  IF  M  R+   WNSM+ GF+ HG + E L+
Sbjct: 349 HKGIKLNQFVLNGLVDMYAKCGDLANARLIFEGMAHRNRACWNSMISGFAIHGQSKEALE 408

Query: 420 VFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLL 479
            F  M +S   P+ +TFL +LSAC+H G V+ G E+F+ M + Y +  G +HY  +I+LL
Sbjct: 409 FFGRMEDSHEGPDEITFLSVLSACAHGGFVNAGLEIFSRM-EKYGLTTGIKHYGCLIDLL 467

Query: 480 GRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPA- 538
           GRAG+IKEA + + R+P +P+  +WGALLGAC     + E+A+   + ++++D   +   
Sbjct: 468 GRAGRIKEAYDLIKRMPVKPNDVVWGALLGACRV-HLDMEMADRVVEEIVKVDSNISSGC 526

Query: 539 ---HVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLM 577
              +V+L NIYAAS R  +  K+RM+M  KG +K  GCS +M
Sbjct: 527 DSHYVLLSNIYAASDRWEKAEKMRMEMANKGFQKTSGCSSIM 568



 Score =  197 bits (502), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 124/422 (29%), Positives = 209/422 (49%), Gaps = 23/422 (5%)

Query: 40  RNVVSYNAMLSG-----FLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARK 94
           +N V ++ M+       + + G + ++R++F+ MPERN V+W AMICG    G    A  
Sbjct: 122 KNGVDFDVMIGTSLVCMYAKCGNVVDSRKVFDYMPERNAVTWNAMICGYLGNGDSKSAVL 181

Query: 95  LFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMP--IKNVISWNAMIAGYVECCMMG 152
           LFE+M  R  V+W  M+ G  R+G+   AR+ F+ +P  ++NV++W  M+ GY     M 
Sbjct: 182 LFEKMSIRTAVTWIEMIDGFARSGDTETARRFFDDVPSELRNVVTWTVMVDGYARNAEME 241

Query: 153 EAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGF 212
            A  +FE M +RN   W+SMISGYC+ G V+E   +F R+P +N+V+W ++I G+A NGF
Sbjct: 242 AAREVFEGMPQRNFFAWSSMISGYCKKGNVKEARSIFDRIPVRNLVNWNSLISGYAQNGF 301

Query: 213 HKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVR----DEIS 268
            +E+L  F +M+     G   +  +  S+++   + G L+  + +   +  +    ++  
Sbjct: 302 SEEALEAFGKMQA---EGFEPDEVTIASVLSACSQLGLLDAGKKIHHMMNHKGIKLNQFV 358

Query: 269 WTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGV 328
              ++D Y   G ++NA  +F  M  R+   W +MISG   +    EA   F  M     
Sbjct: 359 LNGLVDMYAKCGDLANARLIFEGMAHRNRACWNSMISGFAIHGQSKEALEFFGRMEDSHE 418

Query: 329 PPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYN 388
            P   TF  +  A      ++ G +I   + K    + +    CLI +  + G I  AY+
Sbjct: 419 GPDEITFLSVLSACAHGGFVNAGLEIFSRMEKYGLTTGIKHYGCLIDLLGRAGRIKEAYD 478

Query: 389 IFSNM-VSRDLVSWNSMVMGFSHH-------GLANETLKVFESMLESGTHPNSVTFLGIL 440
           +   M V  + V W +++     H        +  E +KV +S + SG   + V    I 
Sbjct: 479 LIKRMPVKPNDVVWGALLGACRVHLDMEMADRVVEEIVKV-DSNISSGCDSHYVLLSNIY 537

Query: 441 SA 442
           +A
Sbjct: 538 AA 539



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 99/365 (27%), Positives = 165/365 (45%), Gaps = 76/365 (20%)

Query: 15  TSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGR----------------- 57
           TS +  Y+K G + +++ +F  MP+RN V++NAM+ G+L NG                  
Sbjct: 133 TSLVCMYAKCGNVVDSRKVFDYMPERNAVTWNAMICGYLGNGDSKSAVLLFEKMSIRTAV 192

Query: 58  --------------LSEARRLFEEMPE--RNVVSWTAMICGLADAGRVCEARKLFEEMPE 101
                            ARR F+++P   RNVV+WT M+ G A    +  AR++FE MP+
Sbjct: 193 TWIEMIDGFARSGDTETARRFFDDVPSELRNVVTWTVMVDGYARNAEMEAAREVFEGMPQ 252

Query: 102 RNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEM 161
           RN  +W+SM+ G  + G + EAR +F+ +P++N+++WN++I+GY +     EA+  F +M
Sbjct: 253 RNFFAWSSMISGYCKKGNVKEARSIFDRIPVRNLVNWNSLISGYAQNGFSEEALEAFGKM 312

Query: 162 E----ERNVVTWTSMISG-----------------------------------YCRAGEV 182
           +    E + VT  S++S                                    Y + G++
Sbjct: 313 QAEGFEPDEVTIASVLSACSQLGLLDAGKKIHHMMNHKGIKLNQFVLNGLVDMYAKCGDL 372

Query: 183 EEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMI 242
                +F  M  +N   W +MI GFA +G  KE+L  F  M+   +  +     S  S  
Sbjct: 373 ANARLIFEGMAHRNRACWNSMISGFAIHGQSKEALEFFGRMEDSHEGPDEITFLSVLSAC 432

Query: 243 --NGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDR-DAVA 299
              G++  G LE    +           +  +ID     G++  AY L   MP + + V 
Sbjct: 433 AHGGFVNAG-LEIFSRMEKYGLTTGIKHYGCLIDLLGRAGRIKEAYDLIKRMPVKPNDVV 491

Query: 300 WTAMI 304
           W A++
Sbjct: 492 WGALL 496



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 52/230 (22%), Positives = 106/230 (46%), Gaps = 12/230 (5%)

Query: 300 WTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLM 359
           W  +I   +      EA  ++  +R  GV  L     VL  A  + + +  G+ +H   +
Sbjct: 63  WCHLIRSYLSQGAPREALLVYTGLRRKGVYLLGVAPLVL-KACASLSIVKHGKALHAESI 121

Query: 360 KTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLK 419
           K   + D+++   L+ MYAKCG + ++  +F  M  R+ V+WN+M+ G+  +G +   + 
Sbjct: 122 KNGVDFDVMIGTSLVCMYAKCGNVVDSRKVFDYMPERNAVTWNAMICGYLGNGDSKSAVL 181

Query: 420 VFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLL 479
           +FE M    +   +VT++ ++   + +G        F+   DV         +  M++  
Sbjct: 182 LFEKM----SIRTAVTWIEMIDGFARSGDTETARRFFD---DVPSELRNVVTWTVMVDGY 234

Query: 480 GRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFC-EGNAEIAEHAAKRL 528
            R  +++ A E    +P + +   W +++   G+C +GN + A     R+
Sbjct: 235 ARNAEMEAAREVFEGMP-QRNFFAWSSMIS--GYCKKGNVKEARSIFDRI 281


>gi|225438557|ref|XP_002276001.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g39530-like [Vitis vinifera]
          Length = 825

 Score =  301 bits (770), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 201/630 (31%), Positives = 320/630 (50%), Gaps = 64/630 (10%)

Query: 15  TSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEM------ 68
           TS I  YSK G I+EA+ +F  + ++  V++  +++G+ + GR + +  LF +M      
Sbjct: 168 TSLIDFYSKNGNIEEARLVFDQLSEKTAVTWTTIIAGYTKCGRSAVSLELFAQMRETNVV 227

Query: 69  PERNVVSWTAMICGLAD---AGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARK 125
           P+R VVS     C + +    G+   A  L     E +V   N ++    +   +   RK
Sbjct: 228 PDRYVVSSVLSACSMLEFLEGGKQIHAYVL-RRGTEMDVSVVNVLIDFYTKCNRVKAGRK 286

Query: 126 VFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTW-------TSMISGYCR 178
           +F+ M +KN+ISW  MI+GY++     EA+ LF EM   N + W       TS+++    
Sbjct: 287 LFDQMVVKNIISWTTMISGYMQNSFDWEAMKLFGEM---NRLGWKPDGFACTSVLTSCGS 343

Query: 179 AGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSC 238
              +E+G  +     + N+ S   +  G   + + K +LL  I+ K + D     NV S 
Sbjct: 344 REALEQGRQVHAYTIKANLESDEFVKNGLI-DMYAKSNLL--IDAKKVFDVMAEQNVISY 400

Query: 239 NSMINGYIRFGRLEEAQNLFDTVPVR---------------------------------- 264
           N+MI GY    +L EA  LF  + VR                                  
Sbjct: 401 NAMIEGYSSQEKLSEALELFHEMRVRLFPPSLLTFVSLLGVSASLFALELSKQIHGLIIK 460

Query: 265 -----DEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYL 319
                D  + +++ID Y     V +A ++F  M ++D V W AM  G  Q+    EA  L
Sbjct: 461 FGVSLDLFAGSALIDVYSKCSYVKDARHVFEEMNEKDIVVWNAMFFGYTQHLENEEALKL 520

Query: 320 FMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAK 379
           +  ++     P   TF+ L  AA   A++  G+Q H  L+K   +    + N L+ MYAK
Sbjct: 521 YSTLQFSRQKPNEFTFAALITAASNLASLRHGQQFHNQLVKMGLDFCPFVTNALVDMYAK 580

Query: 380 CGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGI 439
           CG I+ A  +F++ + RD+V WNSM+   + HG A E L +F  M++ G  PN VTF+ +
Sbjct: 581 CGSIEEARKMFNSSIWRDVVCWNSMISTHAQHGEAEEALGMFREMMKEGIQPNYVTFVAV 640

Query: 440 LSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEP 499
           LSACSHAG V  G   FN+M   + I+PG EHY  +++LLGR+GK+ EA+EF+ ++P EP
Sbjct: 641 LSACSHAGRVEDGLNHFNSM-PGFGIKPGTEHYACVVSLLGRSGKLFEAKEFIEKMPIEP 699

Query: 500 DHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLR 559
              +W +LL AC    GN E+ ++AA+  +  DP ++ ++++L NI+A+ G   +  K+R
Sbjct: 700 AAIVWRSLLSACRIA-GNVELGKYAAEMAISTDPKDSGSYILLSNIFASKGMWADVKKVR 758

Query: 560 MDMGLKGVRKVPGCSWLMRNGGIQMFLSGD 589
             M    V K PG SW+  N  + +F++ D
Sbjct: 759 DRMDSSEVVKEPGRSWIEVNNKVNVFIARD 788



 Score =  199 bits (507), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 139/523 (26%), Positives = 241/523 (46%), Gaps = 60/523 (11%)

Query: 22  SKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMIC 81
           SK   +D A+ +F  MP +N++++++M+S + Q G   EA  +F ++  ++       + 
Sbjct: 73  SKSDRVDNARVVFDKMPHKNLITWSSMVSMYSQQGYSEEALMVFVDLQRKSGEHPNEFV- 131

Query: 82  GLADAGRVCEARKLFEEMPE-----------RNVVSWNSMVVGLIRNGELNEARKVFNSM 130
            LA   R C    + E+  +           ++V    S++    +NG + EAR VF+ +
Sbjct: 132 -LASVIRACTQLGVVEKGAQLHGFVVRSGFDQDVYVGTSLIDFYSKNGNIEEARLVFDQL 190

Query: 131 PIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISG--------------- 175
             K  ++W  +IAGY +C     ++ LF +M E NVV    ++S                
Sbjct: 191 SEKTAVTWTTIIAGYTKCGRSAVSLELFAQMRETNVVPDRYVVSSVLSACSMLEFLEGGK 250

Query: 176 ------------------------YCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNG 211
                                   Y +   V+ G  LF +M  KN++SWT MI G+  N 
Sbjct: 251 QIHAYVLRRGTEMDVSVVNVLIDFYTKCNRVKAGRKLFDQMVVKNIISWTTMISGYMQNS 310

Query: 212 FHKESLLLFIEMK--GICDNGNNCN--VQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEI 267
           F  E++ LF EM   G   +G  C   + SC S     +  GR   A  +   +   DE 
Sbjct: 311 FDWEAMKLFGEMNRLGWKPDGFACTSVLTSCGS--REALEQGRQVHAYTIKANLE-SDEF 367

Query: 268 SWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHG 327
               +ID Y     + +A  +F  M +++ +++ AMI G    E   EA  LF EMR   
Sbjct: 368 VKNGLIDMYAKSNLLIDAKKVFDVMAEQNVISYNAMIEGYSSQEKLSEALELFHEMRVRL 427

Query: 328 VPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAY 387
            PP   TF  L G + +   ++L +QIH +++K     DL   + LI +Y+KC  + +A 
Sbjct: 428 FPPSLLTFVSLLGVSASLFALELSKQIHGLIIKFGVSLDLFAGSALIDVYSKCSYVKDAR 487

Query: 388 NIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAG 447
           ++F  M  +D+V WN+M  G++ H    E LK++ ++  S   PN  TF  +++A S+  
Sbjct: 488 HVFEEMNEKDIVVWNAMFFGYTQHLENEEALKLYSTLQFSRQKPNEFTFAALITAASNLA 547

Query: 448 LVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEE 490
            +  G +  N +  +  +   P    +++++  + G I+EA +
Sbjct: 548 SLRHGQQFHNQLVKM-GLDFCPFVTNALVDMYAKCGSIEEARK 589



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 67/261 (25%), Positives = 110/261 (42%), Gaps = 60/261 (22%)

Query: 354 IHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGL 413
           IH  ++ +  +SD  L N LI++ +K   +DNA  +F  M  ++L++W+SMV  +S  G 
Sbjct: 49  IHGQIIVSGLQSDTFLANILINVCSKSDRVDNARVVFDKMPHKNLITWSSMVSMYSQQGY 108

Query: 414 ANETLKVFESML-ESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHY 472
           + E L VF  +  +SG HPN      ++ AC+  G+V +G +L       + ++ G +  
Sbjct: 109 SEEALMVFVDLQRKSGEHPNEFVLASVIRACTQLGVVEKGAQLHG-----FVVRSGFDQD 163

Query: 473 V----SMINLLGRAGKIKEAEEFVLRLPFE------------------------------ 498
           V    S+I+   + G I+EA     RL F+                              
Sbjct: 164 VYVGTSLIDFYSKNGNIEEA-----RLVFDQLSEKTAVTWTTIIAGYTKCGRSAVSLELF 218

Query: 499 ---------PDHRIWGALLGACG---FCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIY 546
                    PD  +  ++L AC    F EG  +I  +  +R  E+D        VL + Y
Sbjct: 219 AQMRETNVVPDRYVVSSVLSACSMLEFLEGGKQIHAYVLRRGTEMD---VSVVNVLIDFY 275

Query: 547 AASGRHVEEHKLRMDMGLKGV 567
               R     KL   M +K +
Sbjct: 276 TKCNRVKAGRKLFDQMVVKNI 296


>gi|259490042|ref|NP_001159140.1| hypothetical protein [Zea mays]
 gi|223942207|gb|ACN25187.1| unknown [Zea mays]
 gi|414585730|tpg|DAA36301.1| TPA: hypothetical protein ZEAMMB73_369042 [Zea mays]
          Length = 885

 Score =  301 bits (770), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 184/594 (30%), Positives = 308/594 (51%), Gaps = 44/594 (7%)

Query: 47  AMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVS 106
           A++  F++ G +  A RLF  + E  +    +M+ G      V  A +LF+ MPER+VVS
Sbjct: 198 ALVDMFVRCGAVDLASRLFVRIKEPTMFCRNSMLAGYVKTYGVDHALELFDSMPERDVVS 257

Query: 107 WNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEE--- 163
           WN MV  L ++G + EA  +   M  K V   +      +  C    ++   +++     
Sbjct: 258 WNMMVSALSQSGRVREALDMVVDMQSKGVRLDSTTYTSSLTACARLSSLRWGKQLHAQVI 317

Query: 164 RNV-----VTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLL 218
           RN+        ++++  Y ++G  +E   +F  +  +N V+WT +I GF   G   ES+ 
Sbjct: 318 RNLPHIDPYVASALVELYAKSGCFKEAKGVFNSLHDRNNVAWTVLISGFLQYGCFTESVE 377

Query: 219 LFIEMK----------------GICDNGNNC-------------NVQSC---NSMINGYI 246
           LF +M+                G C   + C              +Q+    NS+I+ Y 
Sbjct: 378 LFNQMRAELMTLDQFALATLISGCCSRMDLCLGRQLHSLCLKSGQIQAVVVSNSLISMYA 437

Query: 247 RFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISG 306
           +   L+ A+ +F  +  +D +SWTSMI  Y  VG V+ A   F  M +++ + W AM+  
Sbjct: 438 KCDNLQSAEAIFRFMNEKDIVSWTSMITAYSQVGNVAKAREFFDGMSEKNVITWNAMLGA 497

Query: 307 LVQNELFVEATYLFMEMRAHG-VPPLNATFSVLF-GAAGATANIDLGRQIHCVLMKTESE 364
            +Q+    +   ++  M +   V P   T+  LF G A   AN  LG QI    +K    
Sbjct: 498 YIQHGAEEDGLRMYKVMLSEEYVRPDWVTYVTLFKGCADLGAN-KLGDQIIGRTVKVGLI 556

Query: 365 SDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESM 424
            D  + N +I+MY+KCG I  A  +F  +  +D+VSWN+M+ G+S HG+  + +++F+ +
Sbjct: 557 IDTSVANAVITMYSKCGRILEARKVFDFLNVKDIVSWNAMITGYSQHGMGKQAIEIFDDI 616

Query: 425 LESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGK 484
           L+ G  P+ ++++ +LS CSH+GLV  G   F+ M   + I PG EH+  M++LLGRAG 
Sbjct: 617 LKRGAKPDYISYVAVLSGCSHSGLVQEGKFYFDMMKRAHNISPGLEHFSCMVDLLGRAGH 676

Query: 485 IKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCN 544
           + EA++ +  +P +P   +WGALL AC    GN E+AE AAK + ELD  ++ +++++  
Sbjct: 677 LTEAKDLIDDMPMKPTAEVWGALLSACKI-HGNNELAELAAKHVFELDSPDSGSYMLMAK 735

Query: 545 IYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
           IYA +G+  +  ++R  M  KG++K PG SW+  +  + +F + D    QV  I
Sbjct: 736 IYADAGKSDDSAQIRKLMRDKGIKKNPGYSWMEVDNKVHVFKADDVSHPQVLAI 789



 Score =  182 bits (463), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 131/483 (27%), Positives = 234/483 (48%), Gaps = 26/483 (5%)

Query: 28  DEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAG 87
           D  + L   +   NV+++N ML+G+ + GRLS+A  LF  MP R+V SW  ++ G   + 
Sbjct: 77  DARRLLLMDIAHPNVITHNVMLNGYAKLGRLSDAVELFGRMPARDVASWNTLMSGYFQSR 136

Query: 88  RVCEARKLFEEMPERNVVSW-NSMVVGLIRNG-----------ELNEARKVFNSMPIKNV 135
           +   + + F  M  R+  SW N+  +                 +L    + F+S     V
Sbjct: 137 QYLVSLETFLSM-HRSGDSWPNAFTLACAMKSCGALGWHSLALQLLAMVQKFDSQDDSEV 195

Query: 136 ISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRK 195
            +  A++  +V C  +  A  LF  ++E  +    SM++GY +   V+    LF  MP +
Sbjct: 196 AA--ALVDMFVRCGAVDLASRLFVRIKEPTMFCRNSMLAGYVKTYGVDHALELFDSMPER 253

Query: 196 NVVSWTAMIGGFAWNGFHKESLLLFIEM--KGICDNGN--NCNVQSCNSMINGYIRFGRL 251
           +VVSW  M+   + +G  +E+L + ++M  KG+  +      ++ +C  + +  +R+G+ 
Sbjct: 254 DVVSWNMMVSALSQSGRVREALDMVVDMQSKGVRLDSTTYTSSLTACARLSS--LRWGKQ 311

Query: 252 EEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNE 311
             AQ +   +P  D    +++++ Y   G    A  +F+++ DR+ VAWT +ISG +Q  
Sbjct: 312 LHAQ-VIRNLPHIDPYVASALVELYAKSGCFKEAKGVFNSLHDRNNVAWTVLISGFLQYG 370

Query: 312 LFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILEN 371
            F E+  LF +MRA  +       + L     +  ++ LGRQ+H + +K+     +++ N
Sbjct: 371 CFTESVELFNQMRAELMTLDQFALATLISGCCSRMDLCLGRQLHSLCLKSGQIQAVVVSN 430

Query: 372 CLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHP 431
            LISMYAKC  + +A  IF  M  +D+VSW SM+  +S  G   +  + F+ M E     
Sbjct: 431 SLISMYAKCDNLQSAEAIFRFMNEKDIVSWTSMITAYSQVGNVAKAREFFDGMSE----K 486

Query: 432 NSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEF 491
           N +T+  +L A    G    G  ++  M     ++P    YV++       G  K  ++ 
Sbjct: 487 NVITWNAMLGAYIQHGAEEDGLRMYKVMLSEEYVRPDWVTYVTLFKGCADLGANKLGDQI 546

Query: 492 VLR 494
           + R
Sbjct: 547 IGR 549



 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 102/361 (28%), Positives = 172/361 (47%), Gaps = 24/361 (6%)

Query: 4   RNHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARR 63
           RN P       ++ +  Y+K G   EAK +F  +  RN V++  ++SGFLQ G  +E+  
Sbjct: 318 RNLPHIDPYVASALVELYAKSGCFKEAKGVFNSLHDRNNVAWTVLISGFLQYGCFTESVE 377

Query: 64  LFEEMPER----NVVSWTAMICGLADAGRVCEARKL----FEEMPERNVVSWNSMVVGLI 115
           LF +M       +  +   +I G      +C  R+L     +    + VV  NS++    
Sbjct: 378 LFNQMRAELMTLDQFALATLISGCCSRMDLCLGRQLHSLCLKSGQIQAVVVSNSLISMYA 437

Query: 116 RNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISG 175
           +   L  A  +F  M  K+++SW +MI  Y +   + +A   F+ M E+NV+TW +M+  
Sbjct: 438 KCDNLQSAEAIFRFMNEKDIVSWTSMITAYSQVGNVAKAREFFDGMSEKNVITWNAMLGA 497

Query: 176 YCRAGEVEEGYCLFRRM-----PRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNG 230
           Y + G  E+G  +++ M      R + V++  +  G A  G +K    +      +   G
Sbjct: 498 YIQHGAEEDGLRMYKVMLSEEYVRPDWVTYVTLFKGCADLGANKLGDQIIGRTVKV---G 554

Query: 231 NNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFH 290
              +    N++I  Y + GR+ EA+ +FD + V+D +SW +MI GY   G    A  +F 
Sbjct: 555 LIIDTSVANAVITMYSKCGRILEARKVFDFLNVKDIVSWNAMITGYSQHGMGKQAIEIFD 614

Query: 291 NMPDR----DAVAWTAMISGLVQNELFVEATYLF-MEMRAHGVPPLNATFSV---LFGAA 342
           ++  R    D +++ A++SG   + L  E  + F M  RAH + P    FS    L G A
Sbjct: 615 DILKRGAKPDYISYVAVLSGCSHSGLVQEGKFYFDMMKRAHNISPGLEHFSCMVDLLGRA 674

Query: 343 G 343
           G
Sbjct: 675 G 675



 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 97/409 (23%), Positives = 197/409 (48%), Gaps = 11/409 (2%)

Query: 108 NSMVVGLIRNGELNEARKVF-NSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNV 166
           N+++   +  G L++AR++    +   NVI+ N M+ GY +   + +A+ LF  M  R+V
Sbjct: 63  NTLLHAYLSCGALSDARRLLLMDIAHPNVITHNVMLNGYAKLGRLSDAVELFGRMPARDV 122

Query: 167 VTWTSMISGYCRAGEVEEGYCLFRRMPRK-----NVVSWTAMIGGFAWNGFHKESLLLFI 221
            +W +++SGY ++ +       F  M R      N  +    +      G+H  +L L  
Sbjct: 123 ASWNTLMSGYFQSRQYLVSLETFLSMHRSGDSWPNAFTLACAMKSCGALGWHSLALQLLA 182

Query: 222 EMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQ 281
            ++   D+ ++  V +  ++++ ++R G ++ A  LF  +         SM+ GY+    
Sbjct: 183 MVQKF-DSQDDSEVAA--ALVDMFVRCGAVDLASRLFVRIKEPTMFCRNSMLAGYVKTYG 239

Query: 282 VSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGA 341
           V +A  LF +MP+RD V+W  M+S L Q+    EA  + ++M++ GV   + T++    A
Sbjct: 240 VDHALELFDSMPERDVVSWNMMVSALSQSGRVREALDMVVDMQSKGVRLDSTTYTSSLTA 299

Query: 342 AGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSW 401
               +++  G+Q+H  +++     D  + + L+ +YAK G    A  +F+++  R+ V+W
Sbjct: 300 CARLSSLRWGKQLHAQVIRNLPHIDPYVASALVELYAKSGCFKEAKGVFNSLHDRNNVAW 359

Query: 402 NSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFD 461
             ++ GF  +G   E++++F  M       +      ++S C     +  G +L +    
Sbjct: 360 TVLISGFLQYGCFTESVELFNQMRAELMTLDQFALATLISGCCSRMDLCLGRQLHSLCLK 419

Query: 462 VYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGA 510
             +IQ       S+I++  +   ++ AE  + R   E D   W +++ A
Sbjct: 420 SGQIQAVVVSN-SLISMYAKCDNLQSAEA-IFRFMNEKDIVSWTSMITA 466



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 71/268 (26%), Positives = 140/268 (52%), Gaps = 17/268 (6%)

Query: 11  VVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPE 70
           VV   S I+ Y+K   +  A+A+F+ M ++++VS+ +M++ + Q G +++AR  F+ M E
Sbjct: 426 VVVSNSLISMYAKCDNLQSAEAIFRFMNEKDIVSWTSMITAYSQVGNVAKAREFFDGMSE 485

Query: 71  RNVVSWTAMICGLADAGRVCEARKLFEEMPERNVV--SWNSMV--------VGLIRNGEL 120
           +NV++W AM+      G   +  ++++ M     V   W + V        +G  + G+ 
Sbjct: 486 KNVITWNAMLGAYIQHGAEEDGLRMYKVMLSEEYVRPDWVTYVTLFKGCADLGANKLGDQ 545

Query: 121 NEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAG 180
              R V   + I   ++ NA+I  Y +C  + EA  +F+ +  +++V+W +MI+GY + G
Sbjct: 546 IIGRTVKVGLIIDTSVA-NAVITMYSKCGRILEARKVFDFLNVKDIVSWNAMITGYSQHG 604

Query: 181 EVEEGYCLF----RRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQ 236
             ++   +F    +R  + + +S+ A++ G + +G  +E    F  MK   +        
Sbjct: 605 MGKQAIEIFDDILKRGAKPDYISYVAVLSGCSHSGLVQEGKFYFDMMKRAHNISPGLEHF 664

Query: 237 SCNSMINGYIRFGRLEEAQNLFDTVPVR 264
           SC  M++   R G L EA++L D +P++
Sbjct: 665 SC--MVDLLGRAGHLTEAKDLIDDMPMK 690


>gi|449461160|ref|XP_004148310.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
            repeat-containing protein At3g18840-like [Cucumis
            sativus]
          Length = 1096

 Score =  300 bits (769), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 191/622 (30%), Positives = 325/622 (52%), Gaps = 46/622 (7%)

Query: 18   ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWT 77
            IT Y+K G +++A+ LF  MP+RNV S+NA+++ ++++  L +AR LF+    +++V++ 
Sbjct: 453  ITFYAKHGLLNDAQKLFDEMPERNVFSWNAIIAAYVKSHNLRQARALFDSAVCKDLVTYN 512

Query: 78   AMICGLADA-GRVCEARKLFEEM---PERNVVSWNSMVVGLIRNGELN--EARKVFNSMP 131
            +M+ G A + G   +A   F EM   P+   +   +++  L    +L      K  +S  
Sbjct: 513  SMLSGYARSDGYQGQALGFFMEMQTAPDMIRIDEFTLITMLNLTAKLCVISYGKQLHSFM 572

Query: 132  IK-----NVISWNAMIAGYVECCMMGEAI-VLFEEMEERNVVTWTSMISGYCRAGEVEEG 185
            +K      V + +++I  Y +C    EA  V +   E  + V+  +M++  CR GE++  
Sbjct: 573  LKTANDLTVFAASSLIDMYSKCGFFKEACRVYYGCGEVVDSVSRNAMVAACCREGEIDVA 632

Query: 186  YCLF-RRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMK---------------GICDN 229
              LF + + + +VV+W  MI GF  NG+ +ESL LF+ M                  C N
Sbjct: 633  LDLFWKELEQNDVVAWNTMISGFVQNGYEEESLKLFVRMADEKVGWNEHTFASVLSACSN 692

Query: 230  GNNCNVQS-----------------CNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSM 272
              +  +                   C+ +++ Y +   +  A+++   + +++  S TSM
Sbjct: 693  LRSLKLGKEVHAYVLKNRLIANPFICSGLVDVYCKCNNMRYAKSVNSELRMQNVYSITSM 752

Query: 273  IDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLN 332
            I GY S G ++ A  LF ++ ++++  WTA+  G V+ +       L  E R     P  
Sbjct: 753  IVGYSSQGNMAEARKLFDSLDEKNSAVWTALFFGYVKLQQCEAVFELLSEYRKEAKVPDV 812

Query: 333  ATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSN 392
                 + GA    A +  G+QIH  +++   + D  L + L+ MY+KCG I  A  IF  
Sbjct: 813  LILISIIGACAIQAALVPGKQIHSYMLRAGIKLDTKLTSSLVDMYSKCGSIIYAERIFRE 872

Query: 393  MVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRG 452
            +  +D + +N M+ G++HHG  NE +++F+ M++ G  P+++TF+ +LSAC H GLV  G
Sbjct: 873  VTDKDSIIYNIMIAGYAHHGWENEAVQLFKEMVKHGFKPDAITFVALLSACRHGGLVELG 932

Query: 453  WELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACG 512
               F++M + Y I P  +HY  MI+L GRA ++ +A EF+ ++P + D  IWGA L AC 
Sbjct: 933  EHFFDSMSNDYNICPEIDHYACMIDLYGRANQLDKALEFMRKIPIQLDAVIWGAFLNACR 992

Query: 513  FCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPG 572
               GNAE+A  A   LL ++  N   +V L N+YAA G   E  ++R  M  K V+K  G
Sbjct: 993  I-NGNAELARKAEDELLVIEGENGSRYVQLANVYAAEGNWEEMGRIRKKMKGKEVKKNAG 1051

Query: 573  CSWLMRNGGIQMFLSGDKIPAQ 594
            CSW+       +F+SGD+  ++
Sbjct: 1052 CSWVFVESKFHVFISGDRFHSK 1073



 Score =  133 bits (335), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 116/465 (24%), Positives = 222/465 (47%), Gaps = 46/465 (9%)

Query: 79  MICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISW 138
           +I   A  G + +A+KLF+EMPERNV SWN+++   +++  L +AR +F+S   K+++++
Sbjct: 452 LITFYAKHGLLNDAQKLFDEMPERNVFSWNAIIAAYVKSHNLRQARALFDSAVCKDLVTY 511

Query: 139 NAMIAGYVEC-CMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNV 197
           N+M++GY       G+A+  F EM+     T   MI        ++E    F  +   N+
Sbjct: 512 NSMLSGYARSDGYQGQALGFFMEMQ-----TAPDMI-------RIDE----FTLITMLNL 555

Query: 198 VSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNL 257
            +   +I      G    S +L           N+  V + +S+I+ Y + G  +EA  +
Sbjct: 556 TAKLCVIS----YGKQLHSFML--------KTANDLTVFAASSLIDMYSKCGFFKEACRV 603

Query: 258 FDTV-PVRDEISWTSMIDGYLSVGQVSNAYYLF-HNMPDRDAVAWTAMISGLVQNELFVE 315
           +     V D +S  +M+      G++  A  LF   +   D VAW  MISG VQN    E
Sbjct: 604 YYGCGEVVDSVSRNAMVAACCREGEIDVALDLFWKELEQNDVVAWNTMISGFVQNGYEEE 663

Query: 316 ATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLIS 375
           +  LF+ M    V     TF+ +  A     ++ LG+++H  ++K    ++  + + L+ 
Sbjct: 664 SLKLFVRMADEKVGWNEHTFASVLSACSNLRSLKLGKEVHAYVLKNRLIANPFICSGLVD 723

Query: 376 MYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVT 435
           +Y KC  +  A ++ S +  +++ S  SM++G+S  G   E  K+F+S+ E  +   +  
Sbjct: 724 VYCKCNNMRYAKSVNSELRMQNVYSITSMIVGYSSQGNMAEARKLFDSLDEKNSAVWTAL 783

Query: 436 FLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLG----RAGKI--KEAE 489
           F G +        + +   +F  + +  K    P+  + +I+++G    +A  +  K+  
Sbjct: 784 FFGYVK-------LQQCEAVFELLSEYRKEAKVPDVLI-LISIIGACAIQAALVPGKQIH 835

Query: 490 EFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPL 534
            ++LR   + D ++  +L+     C G+   AE   + + + D +
Sbjct: 836 SYMLRAGIKLDTKLTSSLVDMYSKC-GSIIYAERIFREVTDKDSI 879



 Score =  105 bits (263), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 79/287 (27%), Positives = 130/287 (45%), Gaps = 52/287 (18%)

Query: 218 LLFIEMKGICDNGNNCNVQS-----------CNSMINGYIRFGRLEEAQNLFDTVPVRDE 266
           L+F EMK +  +G  C++Q             N +I  Y + G L +AQ LFD +P R+ 
Sbjct: 419 LVFHEMKHL-KHGLLCHLQGIKSGFTPTIFMSNQLITFYAKHGLLNDAQKLFDEMPERNV 477

Query: 267 ISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFV-EATYLFMEMRA 325
            SW ++I  Y+    +  A  LF +   +D V + +M+SG  +++ +  +A   FMEM+ 
Sbjct: 478 FSWNAIIAAYVKSHNLRQARALFDSAVCKDLVTYNSMLSGYARSDGYQGQALGFFMEMQT 537

Query: 326 HGVPPL----NATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCG 381
              P +      T   +         I  G+Q+H  ++KT ++  +   + LI MY+KCG
Sbjct: 538 --APDMIRIDEFTLITMLNLTAKLCVISYGKQLHSFMLKTANDLTVFAASSLIDMYSKCG 595

Query: 382 V--------------------------------IDNAYNIF-SNMVSRDLVSWNSMVMGF 408
                                            ID A ++F   +   D+V+WN+M+ GF
Sbjct: 596 FFKEACRVYYGCGEVVDSVSRNAMVAACCREGEIDVALDLFWKELEQNDVVAWNTMISGF 655

Query: 409 SHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWEL 455
             +G   E+LK+F  M +     N  TF  +LSACS+   +  G E+
Sbjct: 656 VQNGYEEESLKLFVRMADEKVGWNEHTFASVLSACSNLRSLKLGKEV 702


>gi|347954528|gb|AEP33764.1| organelle transcript processing 82, partial [Iberis amara]
          Length = 666

 Score =  300 bits (769), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 186/556 (33%), Positives = 295/556 (53%), Gaps = 20/556 (3%)

Query: 58  LSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPE----RNVVSWNSMVVG 113
           L  A  +FE + E N++ W  M  G A +     A KL+  M       N  ++  ++  
Sbjct: 41  LPYAISVFETIQEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFLLKS 100

Query: 114 LIRNGELNEARKVFNSMPIK-----NVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVT 168
             ++    E +++   + +K     ++    ++I+ YV+   + +A  +F+E   R+VV+
Sbjct: 101 CAKSKAFKEGQQIHGHV-LKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDESPHRDVVS 159

Query: 169 WTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGI-- 226
           +T++I GY   G +E    +F  +P K+VVSW AMI G+A  G +KE+L LF +M     
Sbjct: 160 YTALIKGYASRGYIENAQKMFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNV 219

Query: 227 -CDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWT-SMIDGYLSVGQVSN 284
             D      V S  +  +G I  GR  +  +  D       +    ++ID Y   G++  
Sbjct: 220 RPDESTMVTVVSACAQ-SGSIELGR--QVHSWIDDHGFGSNLKIVNALIDLYSKCGELET 276

Query: 285 AYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGA 344
           A  LF  +P +D ++W  +I G     L+ EA  LF EM   G  P + T   +  A   
Sbjct: 277 ACGLFEGLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAH 336

Query: 345 TANIDLGRQIHCVLMKTES--ESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWN 402
              ID+GR IH  + K      +   L   LI MYAKCG I+ A+ +F++++ + L SWN
Sbjct: 337 LGAIDIGRWIHVYIDKRLKGVANASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWN 396

Query: 403 SMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDV 462
           +M+ GF+ HG A+ +  +F  M ++G  P+ +TF+G+LSACSH+G++  G  +F +M   
Sbjct: 397 AMIFGFAMHGRADASFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTQD 456

Query: 463 YKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAE 522
           YK+ P  EHY  MI+LLG +G  KEAEE +  +  EPD  IW +LL AC    GN E+ E
Sbjct: 457 YKMTPKLEHYGCMIDLLGHSGLFKEAEEMINTMEMEPDGVIWCSLLKACKM-HGNVELGE 515

Query: 523 HAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGI 582
             A+ L++++P N  ++V+L NIYA +GR  E    R  +  KG++KVPGCS +  +  +
Sbjct: 516 SFAQNLIKIEPENPGSYVLLSNIYATAGRWNEVANTRALLNDKGMKKVPGCSSIEIDSVV 575

Query: 583 QMFLSGDKIPAQVAEI 598
             F+ GDK   +  EI
Sbjct: 576 HEFIIGDKFHPRNREI 591



 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 111/383 (28%), Positives = 195/383 (50%), Gaps = 15/383 (3%)

Query: 120 LNEARKVFNSMPIKNVISWNAMIAGYVECCMMGE-------AIVLFEEMEERNVVTWTSM 172
           L   R +   M    + + N  ++  +E C++         AI +FE ++E N++ W +M
Sbjct: 3   LQSLRMIHAQMIKTGLHNTNYALSKLIEFCILSPHFDGLPYAISVFETIQEPNLLIWNTM 62

Query: 173 ISGYCRAGE----VEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICD 228
             G+  + +    ++   C+       N  ++  ++   A +   KE   +   +  +  
Sbjct: 63  FRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFLLKSCAKSKAFKEGQQIHGHVLKL-- 120

Query: 229 NGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYL 288
            G + ++    S+I+ Y++ GRLE+A  +FD  P RD +S+T++I GY S G + NA  +
Sbjct: 121 -GCDLDLYVHTSLISMYVQNGRLEDAHKVFDESPHRDVVSYTALIKGYASRGYIENAQKM 179

Query: 289 FHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANI 348
           F  +P +D V+W AMISG  +   + EA  LF +M    V P  +T   +  A   + +I
Sbjct: 180 FDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSI 239

Query: 349 DLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGF 408
           +LGRQ+H  +      S+L + N LI +Y+KCG ++ A  +F  +  +D++SWN+++ G+
Sbjct: 240 ELGRQVHSWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFEGLPYKDVISWNTLIGGY 299

Query: 409 SHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRG-WELFNAMFDVYKIQP 467
           +H  L  E L +F+ ML SG  PN VT L IL AC+H G +  G W        +  +  
Sbjct: 300 THMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVAN 359

Query: 468 GPEHYVSMINLLGRAGKIKEAEE 490
                 S+I++  + G I+ A +
Sbjct: 360 ASSLRTSLIDMYAKCGDIEAAHQ 382



 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 114/388 (29%), Positives = 191/388 (49%), Gaps = 27/388 (6%)

Query: 45  YNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNV 104
           + +++S ++QNGRL +A ++F+E P R+VVS+TA+I G A  G +  A+K+F+E+P ++V
Sbjct: 129 HTSLISMYVQNGRLEDAHKVFDESPHRDVVSYTALIKGYASRGYIENAQKMFDEIPVKDV 188

Query: 105 VSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEE- 163
           VSWN+M+ G    G   EA ++F  M   NV    + +   V  C    +I L  ++   
Sbjct: 189 VSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQVHSW 248

Query: 164 -------RNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKES 216
                   N+    ++I  Y + GE+E    LF  +P K+V+SW  +IGG+     +KE+
Sbjct: 249 IDDHGFGSNLKIVNALIDLYSKCGELETACGLFEGLPYKDVISWNTLIGGYTHMNLYKEA 308

Query: 217 LLLFIEMKGICDNGNNCNVQS----CNSMINGYIRFGRL------EEAQNLFDTVPVRDE 266
           LLLF EM    +  N+  + S    C  +  G I  GR       +  + + +   +R  
Sbjct: 309 LLLFQEMLRSGETPNDVTMLSILPACAHL--GAIDIGRWIHVYIDKRLKGVANASSLR-- 364

Query: 267 ISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAH 326
              TS+ID Y   G +  A+ +F+++  +   +W AMI G   +     +  +F  MR +
Sbjct: 365 ---TSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADASFDIFSRMRKN 421

Query: 327 GVPPLNATFSVLFGAAGATANIDLGRQI-HCVLMKTESESDLILENCLISMYAKCGVIDN 385
           G+ P + TF  L  A   +  +DLGR I   +    +    L    C+I +    G+   
Sbjct: 422 GIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTQDYKMTPKLEHYGCMIDLLGHSGLFKE 481

Query: 386 AYNIFSNM-VSRDLVSWNSMVMGFSHHG 412
           A  + + M +  D V W S++     HG
Sbjct: 482 AEEMINTMEMEPDGVIWCSLLKACKMHG 509



 Score =  132 bits (331), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 125/458 (27%), Positives = 194/458 (42%), Gaps = 124/458 (27%)

Query: 9   SLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEM 68
            L VH TS I+ Y + G +++A  +F   P R+VVSY A++ G+   G +  A+++F+E+
Sbjct: 125 DLYVH-TSLISMYVQNGRLEDAHKVFDESPHRDVVSYTALIKGYASRGYIENAQKMFDEI 183

Query: 69  PERNVVSWTAMICGLADAGRVCEARKLFEEM------PE--------------------R 102
           P ++VVSW AMI G A+ G   EA +LF++M      P+                    R
Sbjct: 184 PVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELGR 243

Query: 103 NVVSW-------------NSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECC 149
            V SW             N+++    + GEL  A  +F  +P K+VISWN +I GY    
Sbjct: 244 QVHSWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFEGLPYKDVISWNTLIGGYTHMN 303

Query: 150 MMGEAIVLFEEM----EERNVVT------------------W------------------ 169
           +  EA++LF+EM    E  N VT                  W                  
Sbjct: 304 LYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVANASSL 363

Query: 170 -TSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICD 228
            TS+I  Y + G++E  + +F  +  K++ SW AMI GFA +G    S  +F  M+    
Sbjct: 364 RTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADASFDIFSRMR---K 420

Query: 229 NGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYL 288
           NG   +  +   +++     G L+  +++F            SM   Y    ++ +    
Sbjct: 421 NGIEPDDITFVGLLSACSHSGMLDLGRHIF-----------RSMTQDYKMTPKLEH---- 465

Query: 289 FHNMPDRDAVAWTAMISGLVQNELFVEATYLF--MEMRAHGVPPLNATFSVLFGAAGATA 346
                      +  MI  L  + LF EA  +   MEM   GV      +  L  A     
Sbjct: 466 -----------YGCMIDLLGHSGLFKEAEEMINTMEMEPDGV-----IWCSLLKACKMHG 509

Query: 347 NIDLGRQIHCVLMKTESE---SDLILENCLISMYAKCG 381
           N++LG      L+K E E   S ++L N    +YA  G
Sbjct: 510 NVELGESFAQNLIKIEPENPGSYVLLSN----IYATAG 543


>gi|147833266|emb|CAN77478.1| hypothetical protein VITISV_013730 [Vitis vinifera]
          Length = 1009

 Score =  300 bits (769), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 212/668 (31%), Positives = 324/668 (48%), Gaps = 75/668 (11%)

Query: 1   MSERNHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMP----QRNVVSYNAMLSGFLQNG 56
           M ER+     VV  T+ I+ Y + G  DEAK +F LM     + +++S++A+LSGF +NG
Sbjct: 244 MQERD-----VVSWTALISAYMEEGLXDEAKHIFHLMQLDGVKPDLISWSALLSGFARNG 298

Query: 57  RLSEARRLFEEMPER----NVVSWTAMICGLADAGRVCEARKLFEEM---PER-NVVSWN 108
            +  A    EEMPER     V SW  +I G    G + +A  +F  M   PE  N+++  
Sbjct: 299 EIDLALETLEEMPERGLQPTVNSWNGIISGCVQNGYLEDALDMFSRMLWYPEDPNIITIA 358

Query: 109 SMVV---------------------GLIRN--------------GELNEARKVFNSMPIK 133
           S++                      G++ N              G  + A KVF     K
Sbjct: 359 SILPACTGLKALRLGKAIHXIAXKHGIVGNVYVEGSVIDMYSKCGSYDYAEKVFXKAENK 418

Query: 134 NVISWNAMIAGYVECCMMGEAIVLFEEMEER----NVVTWTSMISGYCRAGEVEEGYCLF 189
           N   WN MIA YV    + +A+ L   M++     +V+T+ +++SG+ R G   +   L 
Sbjct: 419 NTAMWNEMIAAYVNEGKVEDALGLLRSMQKDGWKPDVITYNTILSGHARNGLKTQAXELL 478

Query: 190 RRMP----RKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGY 245
             M     + NVVS+  +I GF  +G   E+L +F  M+   D  N   V + +   N  
Sbjct: 479 SEMVQMGLKPNVVSFNVLISGFQQSGLSYEALKVFRIMQSPSDGCNPNEVLNLSMRPNPI 538

Query: 246 IRFGRLEEAQNLFDTVPVRDEISWT-------------SMIDGYLSVGQVSNAYYLFHNM 292
              G L    +L      ++   +T             +++D Y     + +A  +F  +
Sbjct: 539 TITGALPACADLNLWCQGKEIHGYTLRNGFEPNIFVSSALVDMYAKCHDMDSANKVFFRI 598

Query: 293 PDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGR 352
             R+ V+W A+++G + N+   EA  LF+EM   G+ P + TF +LF A G  A I  GR
Sbjct: 599 DGRNTVSWNALMAGYINNKQPEEALKLFLEMLGEGLQPSSITFMILFPACGDIAAIRFGR 658

Query: 353 QIHCVLMKTE-SESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHH 411
            +H    K +  E    + + LI MYAKCG I +A ++F + V +D+  WN+M+  FS H
Sbjct: 659 GLHGYAAKCQLDELKNAIXSALIDMYAKCGSILDAKSVFDSEVEKDVPLWNAMISAFSVH 718

Query: 412 GLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEH 471
           G+A     VF  M   G  P+ +TF+ +LSAC+  GLV  GW+ FN+M   Y +    EH
Sbjct: 719 GMARNAFAVFXQMELLGIXPDHITFVSLLSACARDGLVEEGWKYFNSMEISYGVAATLEH 778

Query: 472 YVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLEL 531
           Y  M+ +LG AG + EA +F+ ++P+ PD  +W  LL AC     N EI E AAK L EL
Sbjct: 779 YTCMVGILGGAGLLDEALDFIRQMPYPPDACMWATLLQACRV-HSNPEIGERAAKALFEL 837

Query: 532 DPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKI 591
           +P NA  +++L NIY +SG       LR  M  + +  +  CS+L        F  G+  
Sbjct: 838 EPDNATNYMLLSNIYVSSGMWDFAKNLRSFMRGRKLLTIKECSYLTVGSHXCTFKGGESS 897

Query: 592 PAQVAEIL 599
             ++ EIL
Sbjct: 898 HPELEEIL 905



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 154/635 (24%), Positives = 269/635 (42%), Gaps = 99/635 (15%)

Query: 1   MSERNHPKSLVVHLTSSITKYSKRGFIDEAKAL--------FQLMPQRNVVSYNAM---- 48
           +S   HP++L+     ++T  S     D    L        F+ +  R VV  NA+    
Sbjct: 58  VSNHIHPQTLLPSFVDTLTNSSPTEISDSISLLNRCSTLSEFRQIHAR-VVKLNALKWKS 116

Query: 49  ------LSGFLQNG-RLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEM-- 99
                 +  + +N   L +AR+L +E+P R V ++ A+I     + +  E    F  M  
Sbjct: 117 SIGNKLVVLYCKNQWSLEDARKLLDEIPNRTVPAYAALIRSYCRSEQWDELFSXFRLMVY 176

Query: 100 ----PERNVV-----SWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCM 150
               P++ +V     + ++M+  L R G++     +  S+   +V   NA+I  Y  C  
Sbjct: 177 EGMLPDKYLVPTILKACSAML--LXRIGKMVHGFVIRKSVE-SDVFVGNALIHFYSNCGD 233

Query: 151 MGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMP----RKNVVSWTAMIGG 206
           +G +  +F  M+ER+VV+WT++IS Y   G  +E   +F  M     + +++SW+A++ G
Sbjct: 234 LGSSRSVFHSMQERDVVSWTALISAYMEEGLXDEAKHIFHLMQLDGVKPDLISWSALLSG 293

Query: 207 FAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDE 266
           FA NG    +L    EM    + G    V S N +I+G ++ G LE+A ++F        
Sbjct: 294 FARNGEIDLALETLEEMP---ERGLQPTVNSWNGIISGCVQNGYLEDALDMF------SR 344

Query: 267 ISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAH 326
           + W       +++  +  A      +    A+   A   G+V N ++VE + + M  +  
Sbjct: 345 MLWYPEDPNIITIASILPACTGLKALRLGKAIHXIAXKHGIVGN-VYVEGSVIDMYSKCG 403

Query: 327 GVPPLNATF-----------SVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLIS 375
                   F           + +  A      ++    +   + K   + D+I  N ++S
Sbjct: 404 SYDYAEKVFXKAENKNTAMWNEMIAAYVNEGKVEDALGLLRSMQKDGWKPDVITYNTILS 463

Query: 376 MYAKCGVIDNAYNIFSNMVSRDL----VSWNSMVMGFSHHGLANETLKVFESM------- 424
            +A+ G+   A  + S MV   L    VS+N ++ GF   GL+ E LKVF  M       
Sbjct: 464 GHARNGLKTQAXELLSEMVQMGLKPNVVSFNVLISGFQQSGLSYEALKVFRIMQSPSDGC 523

Query: 425 -----LESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPG--PEHYVS--M 475
                L     PN +T  G L AC+   L  +G E+       Y ++ G  P  +VS  +
Sbjct: 524 NPNEVLNLSMRPNPITITGALPACADLNLWCQGKEIHG-----YTLRNGFEPNIFVSSAL 578

Query: 476 INLLGRAGKIKEAEEFVLRLPFEPDHR---IWGALLGACGFCEGNAEIAEHAAKRLLE-L 531
           +++  +   +  A +   R+    D R    W AL+   G+   N +  E A K  LE L
Sbjct: 579 VDMYAKCHDMDSANKVFFRI----DGRNTVSWNALMA--GYI--NNKQPEEALKLFLEML 630

Query: 532 DPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKG 566
                P+ +    ++ A G   +   +R   GL G
Sbjct: 631 GEGLQPSSITFMILFPACG---DIAAIRFGRGLHG 662



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 79/337 (23%), Positives = 143/337 (42%), Gaps = 20/337 (5%)

Query: 189 FRRMPRKNVVSWTAMIGGFAW-----NGFHKESLLLFIEMKGICDNGNNCNVQSCNSMIN 243
           F  +P+      T  I GF       N  H ++LL         D   N +    +  I+
Sbjct: 34  FFPLPKSKFRVSTPRIIGFKHYSTVSNHIHPQTLL-----PSFVDTLTNSSPTEISDSIS 88

Query: 244 GYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSN------AYYLFHNMPDRDA 297
              R   L E + +   V   + + W S I   L V    N      A  L   +P+R  
Sbjct: 89  LLNRCSTLSEFRQIHARVVKLNALKWKSSIGNKLVVLYCKNQWSLEDARKLLDEIPNRTV 148

Query: 298 VAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCV 357
            A+ A+I    ++E + E    F  M   G+ P       +  A  A     +G+ +H  
Sbjct: 149 PAYAALIRSYCRSEQWDELFSXFRLMVYEGMLPDKYLVPTILKACSAMLLXRIGKMVHGF 208

Query: 358 LMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANET 417
           +++   ESD+ + N LI  Y+ CG + ++ ++F +M  RD+VSW +++  +   GL +E 
Sbjct: 209 VIRKSVESDVFVGNALIHFYSNCGDLGSSRSVFHSMQERDVVSWTALISAYMEEGLXDEA 268

Query: 418 LKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMIN 477
             +F  M   G  P+ +++  +LS  +  G +    E    M +   +QP    +  +I+
Sbjct: 269 KHIFHLMQLDGVKPDLISWSALLSGFARNGEIDLALETLEEMPE-RGLQPTVNSWNGIIS 327

Query: 478 LLGRAGKIKEAEEFVLRL---PFEPDHRIWGALLGAC 511
              + G +++A +   R+   P +P+     ++L AC
Sbjct: 328 GCVQNGYLEDALDMFSRMLWYPEDPNIITIASILPAC 364


>gi|297736528|emb|CBI25399.3| unnamed protein product [Vitis vinifera]
          Length = 846

 Score =  300 bits (769), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 208/705 (29%), Positives = 332/705 (47%), Gaps = 123/705 (17%)

Query: 4   RNHPKSLVVHLTSSITKY----------SKRGFIDEAKALFQLMPQRN------VVSYNA 47
           RN P+S+ +  T   T+           +++G I EAKA+  L+ + N      +V +N 
Sbjct: 47  RNRPESIGISETYQQTQVQDLIDVLRDCAEKGSIREAKAVHGLVLKSNFEDKDLMVLFNH 106

Query: 48  MLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEM------PE 101
               + +      A  +F+EMP+RNV SWT MI G  + G   +  K F EM      P+
Sbjct: 107 AAHVYSKCSEFRAACGVFDEMPQRNVFSWTVMIVGSTEHGLFFDGFKFFCEMLNSGILPD 166

Query: 102 R--------NVVSWNSMVVGLI-------------------------RNGELNEARKVFN 128
           +        + +  +S+ +G +                         + G + ++  VFN
Sbjct: 167 KFAYSAIIQSCIGLDSLELGKMVHAQIVMRGFATHIFVSTSLLNMYAKLGSIEDSYWVFN 226

Query: 129 SMPIKNVISWNAMIAGYVECCMMGEAIVLFEEME-------------------------- 162
            M   N +SWNAMI+G     +  EA  LF  M+                          
Sbjct: 227 MMTEHNQVSWNAMISGCTSNGLHLEAFDLFVRMKNGACTPNMYTLVSVSKAVGKLVDVNM 286

Query: 163 -------------ERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVS------WTAM 203
                        E NV+  T++I  Y + G + +   +F      N ++      W AM
Sbjct: 287 GKEVQNCASELGIEGNVLVGTALIDMYSKCGSLHDARSVFD----TNFINCGVNTPWNAM 342

Query: 204 IGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGY-----IRFGRLEEAQNL- 257
           I G++ +G  +E+L L+++M   C NG   ++ +  S+ N       ++FGR+     L 
Sbjct: 343 ISGYSQSGCSQEALELYVQM---CQNGITSDLYTYCSVFNAIAASKSLQFGRVVHGMVLK 399

Query: 258 ----FDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELF 313
                  V V + I+     D Y   G + +   +F  M +RD V+WT +++   Q+ L 
Sbjct: 400 CGLDLMVVSVNNAIA-----DAYSKCGFLEDVRKVFDRMEERDIVSWTTLVTAYSQSSLG 454

Query: 314 VEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCL 373
            EA   F  MR  G  P   TFS +  +  +   ++ GRQ+H +L K   +++  +E+ L
Sbjct: 455 EEALATFCLMREEGFAPNQFTFSSVLISCASLCFLEYGRQVHGLLCKAGLDTEKCIESAL 514

Query: 374 ISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNS 433
           I MYAKCG I  A  +F  + + D+VSW +++ G++ HGL  + L++F  M  SG   N+
Sbjct: 515 IDMYAKCGSITEAGKVFDKISNPDIVSWTAIISGYAQHGLVEDALQLFRRMELSGIKANA 574

Query: 434 VTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVL 493
           VT L +L ACSH G+V  G   F  M D Y + P  EHY  +I+LLGR G++ +A EF+ 
Sbjct: 575 VTLLCVLFACSHGGMVEEGLFYFQQMEDGYGVVPEMEHYACIIDLLGRVGRLDDAMEFIR 634

Query: 494 RLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHV 553
           ++P EP+  +W  LLG C    GN E+ E AA+++L + P  +  +V+L N Y  +G + 
Sbjct: 635 KMPMEPNEMVWQTLLGGCRV-HGNVELGEIAARKILSIRPEYSATYVLLSNTYIETGSYE 693

Query: 554 EEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
           +   LR  M  +GV+K PG SW+   G +  F SGD+   Q  EI
Sbjct: 694 DGLSLRNVMKDQGVKKEPGYSWISVKGRVHKFYSGDQQHPQKKEI 738


>gi|414585731|tpg|DAA36302.1| TPA: hypothetical protein ZEAMMB73_369042 [Zea mays]
          Length = 865

 Score =  300 bits (769), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 184/594 (30%), Positives = 308/594 (51%), Gaps = 44/594 (7%)

Query: 47  AMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVS 106
           A++  F++ G +  A RLF  + E  +    +M+ G      V  A +LF+ MPER+VVS
Sbjct: 178 ALVDMFVRCGAVDLASRLFVRIKEPTMFCRNSMLAGYVKTYGVDHALELFDSMPERDVVS 237

Query: 107 WNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEE--- 163
           WN MV  L ++G + EA  +   M  K V   +      +  C    ++   +++     
Sbjct: 238 WNMMVSALSQSGRVREALDMVVDMQSKGVRLDSTTYTSSLTACARLSSLRWGKQLHAQVI 297

Query: 164 RNV-----VTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLL 218
           RN+        ++++  Y ++G  +E   +F  +  +N V+WT +I GF   G   ES+ 
Sbjct: 298 RNLPHIDPYVASALVELYAKSGCFKEAKGVFNSLHDRNNVAWTVLISGFLQYGCFTESVE 357

Query: 219 LFIEMK----------------GICDNGNNC-------------NVQSC---NSMINGYI 246
           LF +M+                G C   + C              +Q+    NS+I+ Y 
Sbjct: 358 LFNQMRAELMTLDQFALATLISGCCSRMDLCLGRQLHSLCLKSGQIQAVVVSNSLISMYA 417

Query: 247 RFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISG 306
           +   L+ A+ +F  +  +D +SWTSMI  Y  VG V+ A   F  M +++ + W AM+  
Sbjct: 418 KCDNLQSAEAIFRFMNEKDIVSWTSMITAYSQVGNVAKAREFFDGMSEKNVITWNAMLGA 477

Query: 307 LVQNELFVEATYLFMEMRAHG-VPPLNATFSVLF-GAAGATANIDLGRQIHCVLMKTESE 364
            +Q+    +   ++  M +   V P   T+  LF G A   AN  LG QI    +K    
Sbjct: 478 YIQHGAEEDGLRMYKVMLSEEYVRPDWVTYVTLFKGCADLGAN-KLGDQIIGRTVKVGLI 536

Query: 365 SDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESM 424
            D  + N +I+MY+KCG I  A  +F  +  +D+VSWN+M+ G+S HG+  + +++F+ +
Sbjct: 537 IDTSVANAVITMYSKCGRILEARKVFDFLNVKDIVSWNAMITGYSQHGMGKQAIEIFDDI 596

Query: 425 LESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGK 484
           L+ G  P+ ++++ +LS CSH+GLV  G   F+ M   + I PG EH+  M++LLGRAG 
Sbjct: 597 LKRGAKPDYISYVAVLSGCSHSGLVQEGKFYFDMMKRAHNISPGLEHFSCMVDLLGRAGH 656

Query: 485 IKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCN 544
           + EA++ +  +P +P   +WGALL AC    GN E+AE AAK + ELD  ++ +++++  
Sbjct: 657 LTEAKDLIDDMPMKPTAEVWGALLSACKI-HGNNELAELAAKHVFELDSPDSGSYMLMAK 715

Query: 545 IYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
           IYA +G+  +  ++R  M  KG++K PG SW+  +  + +F + D    QV  I
Sbjct: 716 IYADAGKSDDSAQIRKLMRDKGIKKNPGYSWMEVDNKVHVFKADDVSHPQVLAI 769



 Score =  182 bits (463), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 131/483 (27%), Positives = 234/483 (48%), Gaps = 26/483 (5%)

Query: 28  DEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAG 87
           D  + L   +   NV+++N ML+G+ + GRLS+A  LF  MP R+V SW  ++ G   + 
Sbjct: 57  DARRLLLMDIAHPNVITHNVMLNGYAKLGRLSDAVELFGRMPARDVASWNTLMSGYFQSR 116

Query: 88  RVCEARKLFEEMPERNVVSW-NSMVVGLIRNG-----------ELNEARKVFNSMPIKNV 135
           +   + + F  M  R+  SW N+  +                 +L    + F+S     V
Sbjct: 117 QYLVSLETFLSM-HRSGDSWPNAFTLACAMKSCGALGWHSLALQLLAMVQKFDSQDDSEV 175

Query: 136 ISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRK 195
            +  A++  +V C  +  A  LF  ++E  +    SM++GY +   V+    LF  MP +
Sbjct: 176 AA--ALVDMFVRCGAVDLASRLFVRIKEPTMFCRNSMLAGYVKTYGVDHALELFDSMPER 233

Query: 196 NVVSWTAMIGGFAWNGFHKESLLLFIEM--KGICDNGN--NCNVQSCNSMINGYIRFGRL 251
           +VVSW  M+   + +G  +E+L + ++M  KG+  +      ++ +C  + +  +R+G+ 
Sbjct: 234 DVVSWNMMVSALSQSGRVREALDMVVDMQSKGVRLDSTTYTSSLTACARLSS--LRWGKQ 291

Query: 252 EEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNE 311
             AQ +   +P  D    +++++ Y   G    A  +F+++ DR+ VAWT +ISG +Q  
Sbjct: 292 LHAQ-VIRNLPHIDPYVASALVELYAKSGCFKEAKGVFNSLHDRNNVAWTVLISGFLQYG 350

Query: 312 LFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILEN 371
            F E+  LF +MRA  +       + L     +  ++ LGRQ+H + +K+     +++ N
Sbjct: 351 CFTESVELFNQMRAELMTLDQFALATLISGCCSRMDLCLGRQLHSLCLKSGQIQAVVVSN 410

Query: 372 CLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHP 431
            LISMYAKC  + +A  IF  M  +D+VSW SM+  +S  G   +  + F+ M E     
Sbjct: 411 SLISMYAKCDNLQSAEAIFRFMNEKDIVSWTSMITAYSQVGNVAKAREFFDGMSE----K 466

Query: 432 NSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEF 491
           N +T+  +L A    G    G  ++  M     ++P    YV++       G  K  ++ 
Sbjct: 467 NVITWNAMLGAYIQHGAEEDGLRMYKVMLSEEYVRPDWVTYVTLFKGCADLGANKLGDQI 526

Query: 492 VLR 494
           + R
Sbjct: 527 IGR 529



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 102/361 (28%), Positives = 172/361 (47%), Gaps = 24/361 (6%)

Query: 4   RNHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARR 63
           RN P       ++ +  Y+K G   EAK +F  +  RN V++  ++SGFLQ G  +E+  
Sbjct: 298 RNLPHIDPYVASALVELYAKSGCFKEAKGVFNSLHDRNNVAWTVLISGFLQYGCFTESVE 357

Query: 64  LFEEMPER----NVVSWTAMICGLADAGRVCEARKL----FEEMPERNVVSWNSMVVGLI 115
           LF +M       +  +   +I G      +C  R+L     +    + VV  NS++    
Sbjct: 358 LFNQMRAELMTLDQFALATLISGCCSRMDLCLGRQLHSLCLKSGQIQAVVVSNSLISMYA 417

Query: 116 RNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISG 175
           +   L  A  +F  M  K+++SW +MI  Y +   + +A   F+ M E+NV+TW +M+  
Sbjct: 418 KCDNLQSAEAIFRFMNEKDIVSWTSMITAYSQVGNVAKAREFFDGMSEKNVITWNAMLGA 477

Query: 176 YCRAGEVEEGYCLFRRM-----PRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNG 230
           Y + G  E+G  +++ M      R + V++  +  G A  G +K    +      +   G
Sbjct: 478 YIQHGAEEDGLRMYKVMLSEEYVRPDWVTYVTLFKGCADLGANKLGDQIIGRTVKV---G 534

Query: 231 NNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFH 290
              +    N++I  Y + GR+ EA+ +FD + V+D +SW +MI GY   G    A  +F 
Sbjct: 535 LIIDTSVANAVITMYSKCGRILEARKVFDFLNVKDIVSWNAMITGYSQHGMGKQAIEIFD 594

Query: 291 NMPDR----DAVAWTAMISGLVQNELFVEATYLF-MEMRAHGVPPLNATFSV---LFGAA 342
           ++  R    D +++ A++SG   + L  E  + F M  RAH + P    FS    L G A
Sbjct: 595 DILKRGAKPDYISYVAVLSGCSHSGLVQEGKFYFDMMKRAHNISPGLEHFSCMVDLLGRA 654

Query: 343 G 343
           G
Sbjct: 655 G 655



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 97/409 (23%), Positives = 197/409 (48%), Gaps = 11/409 (2%)

Query: 108 NSMVVGLIRNGELNEARKVF-NSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNV 166
           N+++   +  G L++AR++    +   NVI+ N M+ GY +   + +A+ LF  M  R+V
Sbjct: 43  NTLLHAYLSCGALSDARRLLLMDIAHPNVITHNVMLNGYAKLGRLSDAVELFGRMPARDV 102

Query: 167 VTWTSMISGYCRAGEVEEGYCLFRRMPRK-----NVVSWTAMIGGFAWNGFHKESLLLFI 221
            +W +++SGY ++ +       F  M R      N  +    +      G+H  +L L  
Sbjct: 103 ASWNTLMSGYFQSRQYLVSLETFLSMHRSGDSWPNAFTLACAMKSCGALGWHSLALQLLA 162

Query: 222 EMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQ 281
            ++   D+ ++  V +  ++++ ++R G ++ A  LF  +         SM+ GY+    
Sbjct: 163 MVQKF-DSQDDSEVAA--ALVDMFVRCGAVDLASRLFVRIKEPTMFCRNSMLAGYVKTYG 219

Query: 282 VSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGA 341
           V +A  LF +MP+RD V+W  M+S L Q+    EA  + ++M++ GV   + T++    A
Sbjct: 220 VDHALELFDSMPERDVVSWNMMVSALSQSGRVREALDMVVDMQSKGVRLDSTTYTSSLTA 279

Query: 342 AGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSW 401
               +++  G+Q+H  +++     D  + + L+ +YAK G    A  +F+++  R+ V+W
Sbjct: 280 CARLSSLRWGKQLHAQVIRNLPHIDPYVASALVELYAKSGCFKEAKGVFNSLHDRNNVAW 339

Query: 402 NSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFD 461
             ++ GF  +G   E++++F  M       +      ++S C     +  G +L +    
Sbjct: 340 TVLISGFLQYGCFTESVELFNQMRAELMTLDQFALATLISGCCSRMDLCLGRQLHSLCLK 399

Query: 462 VYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGA 510
             +IQ       S+I++  +   ++ AE  + R   E D   W +++ A
Sbjct: 400 SGQIQAVVVSN-SLISMYAKCDNLQSAEA-IFRFMNEKDIVSWTSMITA 446



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 71/268 (26%), Positives = 140/268 (52%), Gaps = 17/268 (6%)

Query: 11  VVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPE 70
           VV   S I+ Y+K   +  A+A+F+ M ++++VS+ +M++ + Q G +++AR  F+ M E
Sbjct: 406 VVVSNSLISMYAKCDNLQSAEAIFRFMNEKDIVSWTSMITAYSQVGNVAKAREFFDGMSE 465

Query: 71  RNVVSWTAMICGLADAGRVCEARKLFEEMPERNVV--SWNSMV--------VGLIRNGEL 120
           +NV++W AM+      G   +  ++++ M     V   W + V        +G  + G+ 
Sbjct: 466 KNVITWNAMLGAYIQHGAEEDGLRMYKVMLSEEYVRPDWVTYVTLFKGCADLGANKLGDQ 525

Query: 121 NEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAG 180
              R V   + I   ++ NA+I  Y +C  + EA  +F+ +  +++V+W +MI+GY + G
Sbjct: 526 IIGRTVKVGLIIDTSVA-NAVITMYSKCGRILEARKVFDFLNVKDIVSWNAMITGYSQHG 584

Query: 181 EVEEGYCLF----RRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQ 236
             ++   +F    +R  + + +S+ A++ G + +G  +E    F  MK   +        
Sbjct: 585 MGKQAIEIFDDILKRGAKPDYISYVAVLSGCSHSGLVQEGKFYFDMMKRAHNISPGLEHF 644

Query: 237 SCNSMINGYIRFGRLEEAQNLFDTVPVR 264
           SC  M++   R G L EA++L D +P++
Sbjct: 645 SC--MVDLLGRAGHLTEAKDLIDDMPMK 670


>gi|347954520|gb|AEP33760.1| organelle transcript processing 82, partial [Capsella
           bursa-pastoris]
          Length = 706

 Score =  300 bits (769), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 198/617 (32%), Positives = 315/617 (51%), Gaps = 36/617 (5%)

Query: 4   RNHPKSLVVHLTSSI-------TKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNG 56
           RNHP   ++H   ++        K  K G  +   AL +L      + ++ +   F    
Sbjct: 1   RNHPSLSLLHNCKTLQSLRIIHAKMIKTGLHNTNYALSKL------IEFSVLSPHF---D 51

Query: 57  RLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVV----SWNSMVV 112
            L+ A  +F+ + E N++ W  M  G A +     A  L+  M    +V    ++  ++ 
Sbjct: 52  GLTYAISVFDSIQEPNLLIWNTMFRGHALSSDPVSALYLYVCMISLGLVPNSYTFPFLLK 111

Query: 113 GLIRNGELNEARKVFNSMPIK-----NVISWNAMIAGYVECCMMGEAIVLFEEMEERNVV 167
              ++    E +++   + +K     ++    ++IA YV+     +A  +F++   R+VV
Sbjct: 112 ACAKSKAFREGQQIHGHV-LKLGCDLDLYVHTSLIAMYVKNGRXEDARKVFDQSSHRDVV 170

Query: 168 TWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGI- 226
           ++T++I GY   G +     +F  +P K+VVSW A+I G+A  G +KE+L LF EM    
Sbjct: 171 SYTALIKGYASNGYIXSAQKMFDEIPVKDVVSWNALISGYAETGNYKEALELFKEMMKTN 230

Query: 227 --CDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWT-SMIDGYLSVGQVS 283
              D      V S  +  +  I  GR  +  +  D       +    ++ID Y+  G+V 
Sbjct: 231 VKPDESTMVTVLSACAQ-SASIELGR--QVHSWIDDHGFGSNLKIVNALIDLYIKCGEVE 287

Query: 284 NAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAG 343
            A  LF  +  +D ++W  +I G     L+ EA  LF EM   G  P   T   +  A  
Sbjct: 288 TASGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNEVTMLSILPACA 347

Query: 344 ATANIDLGRQIHCVLMKTES--ESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSW 401
               ID+GR IH  + K      +   L   LI MYAKCG I+ A  +F +M++R L SW
Sbjct: 348 HLGAIDIGRWIHVYIDKRLKGVSNPSSLRTSLIDMYAKCGDIEAAQQVFDSMLNRSLSSW 407

Query: 402 NSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFD 461
           N+M+ GF+ HG AN    +F  M + G  P+ +TF+G+LSACSH+G++  G  +F +M +
Sbjct: 408 NAMIFGFAMHGRANPAFDIFSRMRKDGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTE 467

Query: 462 VYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIA 521
            YKI P  EHY  MI+LLG +G  KEAEE +  +  +PD  IW +LL AC    GN E+ 
Sbjct: 468 DYKITPKLEHYGCMIDLLGHSGLFKEAEEMINSMEMDPDGVIWCSLLKACKM-HGNVELG 526

Query: 522 EHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGG 581
           E  A+ L++++P N+ ++V+L NIYA +GR  E  K R  +  KG++KVPGCS +  +  
Sbjct: 527 ESFAQNLIKIEPKNSGSYVLLSNIYATAGRWNEVAKRRALLNDKGMKKVPGCSSIEIDSV 586

Query: 582 IQMFLSGDKIPAQVAEI 598
           +  F+ GDK+  +  EI
Sbjct: 587 VHEFIIGDKLHPRNREI 603


>gi|359485813|ref|XP_003633340.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 679

 Score =  300 bits (769), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 172/549 (31%), Positives = 283/549 (51%), Gaps = 48/549 (8%)

Query: 58  LSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNV---VSWNSMVVGL 114
           L  AR +F+ +  R+++ W  +I    +     +   LF E+    +    +   ++ G 
Sbjct: 63  LGYARSIFDRIQRRSLIHWNTIIKCYVENQFSHDGIVLFHELVHEYLPDNFTLPCVIKGC 122

Query: 115 IRNGELNEARKVFNSMPIK-----NVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTW 169
            R G + E +++ + + +K     +V    +++  Y +C  +  A  +F+ M +++VV W
Sbjct: 123 ARLGVVQEGKQI-HGLALKIGFGSDVFVQGSLVNMYSKCGEIDCARKVFDGMIDKDVVLW 181

Query: 170 TSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDN 229
            S+I GY R GE++    LF  MP ++  SWT ++ G +                     
Sbjct: 182 NSLIDGYARCGEIDIALQLFEEMPERDAFSWTVLVDGLS--------------------- 220

Query: 230 GNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLF 289
                            + G++E A+ LFD +P R+ +SW +MI+GY+  G   +A  LF
Sbjct: 221 -----------------KCGKVESARKLFDQMPCRNLVSWNAMINGYMKSGDFDSALELF 263

Query: 290 HNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANID 349
           + MP  D V W  MI+G   N  F++A  +F  M   G  P +AT   +  A    A + 
Sbjct: 264 YQMPIWDLVTWNLMIAGYELNGQFMDAVKMFFMMLKLGSRPSHATLVSVLSAVSGLAVLG 323

Query: 350 LGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFS 409
            GR IH  + K   E D IL   LI MYAKCG I++A  +F  +  + +  W ++++G  
Sbjct: 324 KGRWIHSYMEKNGFELDGILGTSLIEMYAKCGCIESALTVFRAIQKKKVGHWTAIIVGLG 383

Query: 410 HHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGP 469
            HG+AN  L +F  M ++G  PN++ F+G+L+AC+HAGLV  G + F+ M + YKI+P  
Sbjct: 384 IHGMANHALALFLEMCKTGLKPNAIIFIGVLNACNHAGLVDDGRQYFDMMMNEYKIEPTL 443

Query: 470 EHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLL 529
           EHY  ++++L RAG ++EA+  +  +P  P+  IW +LLG      G  +I E+AA+R++
Sbjct: 444 EHYGCLVDILCRAGHLEEAKNTIENMPISPNKVIWMSLLGG-SRNHGKIDIGEYAAQRVI 502

Query: 530 ELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGD 589
           E+ P     +++L N+YAASG   +   +R  M  +G RK PGCS +   G +  F+ GD
Sbjct: 503 EVAPETIGCYILLSNMYAASGMWEKVSHVREMMYKRGFRKDPGCSSVEHKGTLHEFIVGD 562

Query: 590 KIPAQVAEI 598
               Q  EI
Sbjct: 563 ISHPQTKEI 571



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 103/336 (30%), Positives = 167/336 (49%), Gaps = 48/336 (14%)

Query: 16  SSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVS 75
           S +  YSK G ID A+ +F  M  ++VV +N+++ G+ + G +  A +LFEEMPER+  S
Sbjct: 152 SLVNMYSKCGEIDCARKVFDGMIDKDVVLWNSLIDGYARCGEIDIALQLFEEMPERDAFS 211

Query: 76  WTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNV 135
           WT ++ GL+  G+V  ARKLF++MP RN+VSWN+M+ G +++G+ + A ++F  MPI ++
Sbjct: 212 WTVLVDGLSKCGKVESARKLFDQMPCRNLVSWNAMINGYMKSGDFDSALELFYQMPIWDL 271

Query: 136 ISWNAMIAGYVECCMMGEAIVLF-----------------------------------EE 160
           ++WN MIAGY       +A+ +F                                     
Sbjct: 272 VTWNLMIAGYELNGQFMDAVKMFFMMLKLGSRPSHATLVSVLSAVSGLAVLGKGRWIHSY 331

Query: 161 ME----ERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKES 216
           ME    E + +  TS+I  Y + G +E    +FR + +K V  WTA+I G   +G    +
Sbjct: 332 MEKNGFELDGILGTSLIEMYAKCGCIESALTVFRAIQKKKVGHWTAIIVGLGIHGMANHA 391

Query: 217 LLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWT-----S 271
           L LF+EM   C  G   N      ++N     G +++ +  FD +    +I  T      
Sbjct: 392 LALFLEM---CKTGLKPNAIIFIGVLNACNHAGLVDDGRQYFDMMMNEYKIEPTLEHYGC 448

Query: 272 MIDGYLSVGQVSNAYYLFHNMP-DRDAVAWTAMISG 306
           ++D     G +  A     NMP   + V W +++ G
Sbjct: 449 LVDILCRAGHLEEAKNTIENMPISPNKVIWMSLLGG 484



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 71/271 (26%), Positives = 124/271 (45%), Gaps = 14/271 (5%)

Query: 278 SVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSV 337
            +  +  A  +F  +  R  + W  +I   V+N+   +   LF E+  H   P N T   
Sbjct: 59  KINDLGYARSIFDRIQRRSLIHWNTIIKCYVENQFSHDGIVLFHEL-VHEYLPDNFTLPC 117

Query: 338 LFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRD 397
           +         +  G+QIH + +K    SD+ ++  L++MY+KCG ID A  +F  M+ +D
Sbjct: 118 VIKGCARLGVVQEGKQIHGLALKIGFGSDVFVQGSLVNMYSKCGEIDCARKVFDGMIDKD 177

Query: 398 LVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFN 457
           +V WNS++ G++  G  +  L++FE M E      +V   G LS C   G V    +LF+
Sbjct: 178 VVLWNSLIDGYARCGEIDIALQLFEEMPERDAFSWTVLVDG-LSKC---GKVESARKLFD 233

Query: 458 AMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGN 517
            M     +      + +MIN   ++G    A E   ++P   D   W  ++   G+ E N
Sbjct: 234 QMPCRNLVS-----WNAMINGYMKSGDFDSALELFYQMPIW-DLVTWNLMIA--GY-ELN 284

Query: 518 AEIAEHAAKRLLELDPLNAPAHVVLCNIYAA 548
            +  +      + L   + P+H  L ++ +A
Sbjct: 285 GQFMDAVKMFFMMLKLGSRPSHATLVSVLSA 315


>gi|225454494|ref|XP_002276948.1| PREDICTED: pentatricopeptide repeat-containing protein At4g01030,
           mitochondrial-like [Vitis vinifera]
          Length = 913

 Score =  300 bits (769), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 196/647 (30%), Positives = 328/647 (50%), Gaps = 62/647 (9%)

Query: 9   SLVVHLTSSITKYSKRGF-IDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEE 67
            L V+L  ++  +  R + +++A  +F  MP    + +N  +   LQ+ +L +   LF +
Sbjct: 165 DLDVYLRCALMNFYGRCWGLEKANQVFHEMPNPEALLWNEAIILNLQSEKLQKGVELFRK 224

Query: 68  MPERNVVSWTAMICGLADA----GRVCEARKL----FEEMPERNVVSWNSMVVGLIRNGE 119
           M    + + TA I  +  A    G +  A+++    F    + +V   N ++    +NG+
Sbjct: 225 MQFSFLKAETATIVRVLQACGKMGALNAAKQIHGYVFRFGLDSDVSLCNPLISMYSKNGK 284

Query: 120 LNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEME----ERNVVTWTSMISG 175
           L  AR+VF+SM  +N  SWN+MI+ Y     + +A  LF E+E    + ++VTW  ++SG
Sbjct: 285 LELARRVFDSMENRNTSSWNSMISSYAALGFLNDAWSLFYELESSDMKPDIVTWNCLLSG 344

Query: 176 YCRAGEVEEGYCLFRRMP----RKNVVSWTAMIGGFAWNGFHKESLLLFIEMKG-ICDNG 230
           +   G  EE   + +RM     + N  S T+++   +  GF    L +  E  G +  NG
Sbjct: 345 HFLHGYKEEVLNILQRMQGEGFKPNSSSMTSVLQAISELGF----LNMGKETHGYVLRNG 400

Query: 231 NNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFH 290
            +C+V    S+I+ Y++   L  AQ +FD +  R+  +W S++ GY   G   +A  L +
Sbjct: 401 FDCDVYVGTSLIDMYVKNHSLTSAQAVFDNMKNRNIFAWNSLVSGYSFKGMFEDALRLLN 460

Query: 291 NM------PD---------------------------------RDAVAWTAMISGLVQNE 311
            M      PD                                  + V+WTA+ISG  Q  
Sbjct: 461 QMEKEGIKPDLVTWNGMISGYAMWGCGKEALAVLHQTKSLGLTPNVVSWTALISGSSQAG 520

Query: 312 LFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILEN 371
              ++   F +M+  GV P +A+ + L  A  + + +  G++IHC+ ++     D+ +  
Sbjct: 521 NNRDSLKFFAQMQQEGVMPNSASITCLLRACASLSLLQKGKEIHCLSIRNGFIEDVFVAT 580

Query: 372 CLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHP 431
            LI MY+K   + NA+ +F  + ++ L SWN M+MGF+  GL  E + VF  M + G  P
Sbjct: 581 ALIDMYSKSSSLKNAHKVFRRIQNKTLASWNCMIMGFAIFGLGKEAISVFNEMQKVGVGP 640

Query: 432 NSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEF 491
           +++TF  +LSAC ++GL+  GW+ F++M   Y+I P  EHY  M++LLGRAG + EA + 
Sbjct: 641 DAITFTALLSACKNSGLIGEGWKYFDSMITDYRIVPRLEHYCCMVDLLGRAGYLDEAWDL 700

Query: 492 VLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGR 551
           +  +P +PD  IWGALLG+C     N + AE AAK L +L+P N+  ++++ N+Y+   R
Sbjct: 701 IHTMPLKPDATIWGALLGSCRI-HKNLKFAETAAKNLFKLEPNNSANYILMMNLYSIFNR 759

Query: 552 HVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
             +   LR  MG  GVR     SW+  N  + +F S +K      +I
Sbjct: 760 WEDMDHLRELMGAAGVRNRQVWSWIQINQRVHVFSSDEKPHPDAGKI 806



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 47/225 (20%), Positives = 96/225 (42%), Gaps = 14/225 (6%)

Query: 271 SMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATY-LFMEMRAHGVP 329
           ++I  YL  G   +A  +F+    R+ + W + +     +   +     +F E+   GV 
Sbjct: 71  NLISSYLGFGDFWSAAMVFYVGLPRNYLKWNSFVEEFKSSAGSLHIVLEVFKELHGKGVV 130

Query: 330 PLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNI 389
             +  +SV         +I LG +IH  L+K   + D+ L   L++ Y +C  ++ A  +
Sbjct: 131 FDSEVYSVALKTCTRVMDIWLGMEIHGCLIKRGFDLDVYLRCALMNFYGRCWGLEKANQV 190

Query: 390 FSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLV 449
           F  M + + + WN  ++         + +++F  M  S     + T + +L AC   G +
Sbjct: 191 FHEMPNPEALLWNEAIILNLQSEKLQKGVELFRKMQFSFLKAETATIVRVLQACGKMGAL 250

Query: 450 SRGWELFNAMF------DVYKIQPGPEHYVSMINLLGRAGKIKEA 488
           +   ++   +F      DV    P       +I++  + GK++ A
Sbjct: 251 NAAKQIHGYVFRFGLDSDVSLCNP-------LISMYSKNGKLELA 288


>gi|357519003|ref|XP_003629790.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355523812|gb|AET04266.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 908

 Score =  300 bits (768), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 185/606 (30%), Positives = 315/606 (51%), Gaps = 35/606 (5%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVV----SYNAMLSGFLQNGRLSEARRLFEEMPERNV 73
           +++Y+K G   E+ +LF+ M +  VV    ++  +L  F   G++ E +R+   + +   
Sbjct: 167 MSEYAKIGNFRESVSLFKKMQKLGVVGNCYTFTCVLKCFAALGKVKECKRVHGYVLKLGF 226

Query: 74  VSWTAMICGLADA----GRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNS 129
            S TA++  L  A    G V  A  LF+E+ E +VVSWNSM+ G + NG      ++F  
Sbjct: 227 GSNTAVVNSLIAAYFKFGGVESAHNLFDELSEPDVVSWNSMINGCVVNGFSGNGLEIFIQ 286

Query: 130 MPIKNV-ISWNAMIAGYVECC-----MMGEAIVLF--EEMEERNVVTWTSMISGYCRAGE 181
           M I  V +    +++  V C       +G A+  F  +      VV   +++  Y + G 
Sbjct: 287 MLILGVEVDLTTLVSVLVACANIGNLSLGRALHGFGVKACFSEEVVFSNTLLDMYSKCGN 346

Query: 182 VEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSM 241
           +     +F +M    +VSWT++I  +   G + +++ LF EM+     G   ++ +  S+
Sbjct: 347 LNGATEVFVKMGDTTIVSWTSIIAAYVREGLYSDAIGLFDEMQS---KGVRPDIYTVTSI 403

Query: 242 INGYIRFGRLEEAQNLFDTV---------PVRDEISWTSMIDGYLSVGQVSNAYYLFHNM 292
           ++       L++ +++   V         PV +     ++I+ Y   G V  A  +F  +
Sbjct: 404 VHACACSSSLDKGRDVHSYVIKNGMGSNLPVTN-----ALINMYAKCGSVEEARLVFSKI 458

Query: 293 PDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGR 352
           P +D V+W  MI G  QN L  EA  LF++M+     P + T + +  A    A +D GR
Sbjct: 459 PVKDIVSWNTMIGGYSQNLLPNEALELFLDMQKQ-FKPDDITMACVLPACAGLAALDKGR 517

Query: 353 QIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHG 412
           +IH  +++    SDL +   L+ MYAKCG++  A  +F  +  +DL+SW  M+ G+  HG
Sbjct: 518 EIHGHILRRGYFSDLHVACALVDMYAKCGLLVLAQLLFDMIPKKDLISWTVMIAGYGMHG 577

Query: 413 LANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHY 472
             NE +  F  M  +G  P+  +F  IL+ACSH+GL++ GW+ FN+M +   ++P  EHY
Sbjct: 578 FGNEAISTFNEMRIAGIEPDESSFSAILNACSHSGLLNEGWKFFNSMRNECGVEPKLEHY 637

Query: 473 VSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELD 532
             +++LL R G + +A +F+  +P +PD  IWG LL  C     + ++AE  A+ + EL+
Sbjct: 638 ACVVDLLARMGNLSKAYKFIESMPIKPDTTIWGVLLSGCRI-HHDVKLAEKVAEHIFELE 696

Query: 533 PLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIP 592
           P N   +VVL N+YA + +  E  KLR  M  +G ++ PGCSW+   G   +F++G+   
Sbjct: 697 PDNTRYYVVLANVYAEAEKWEEVKKLRKRMQKRGFKQNPGCSWIEVGGKFNIFVAGNSKH 756

Query: 593 AQVAEI 598
            Q  +I
Sbjct: 757 PQAKKI 762



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 129/485 (26%), Positives = 234/485 (48%), Gaps = 35/485 (7%)

Query: 85  DAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMP----IKNVISWNA 140
           + G + + RK+F+++    V  WN ++    + G   E+  +F  M     + N  ++  
Sbjct: 141 NCGDLVQGRKIFDKIMNDKVFLWNLLMSEYAKIGNFRESVSLFKKMQKLGVVGNCYTFTC 200

Query: 141 MIA-----GYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRK 195
           ++      G V+ C      VL       N     S+I+ Y + G VE  + LF  +   
Sbjct: 201 VLKCFAALGKVKECKRVHGYVLKLGFGS-NTAVVNSLIAAYFKFGGVESAHNLFDELSEP 259

Query: 196 NVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQ 255
           +VVSW +MI G   NGF    L +FI+M  +   G   ++ +  S++      G L   +
Sbjct: 260 DVVSWNSMINGCVVNGFSGNGLEIFIQMLIL---GVEVDLTTLVSVLVACANIGNLSLGR 316

Query: 256 NLFD---TVPVRDEISWT-SMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNE 311
            L          +E+ ++ +++D Y   G ++ A  +F  M D   V+WT++I+  V+  
Sbjct: 317 ALHGFGVKACFSEEVVFSNTLLDMYSKCGNLNGATEVFVKMGDTTIVSWTSIIAAYVREG 376

Query: 312 LFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILEN 371
           L+ +A  LF EM++ GV P   T + +  A   ++++D GR +H  ++K    S+L + N
Sbjct: 377 LYSDAIGLFDEMQSKGVRPDIYTVTSIVHACACSSSLDKGRDVHSYVIKNGMGSNLPVTN 436

Query: 372 CLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHP 431
            LI+MYAKCG ++ A  +FS +  +D+VSWN+M+ G+S + L NE L++F  M +    P
Sbjct: 437 ALINMYAKCGSVEEARLVFSKIPVKDIVSWNTMIGGYSQNLLPNEALELFLDM-QKQFKP 495

Query: 432 NSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYV-SMINLLGRAGKIKEAEE 490
           + +T   +L AC+    + +G E+   +  + +      H   +++++  + G +  A+ 
Sbjct: 496 DDITMACVLPACAGLAALDKGREIHGHI--LRRGYFSDLHVACALVDMYAKCGLLVLAQL 553

Query: 491 FVLRLPFEPDHRIWGALL---GACGFCEGNAEIAEHAAKRLLELDP--------LNAPAH 539
               +P + D   W  ++   G  GF  GN  I+     R+  ++P        LNA +H
Sbjct: 554 LFDMIP-KKDLISWTVMIAGYGMHGF--GNEAISTFNEMRIAGIEPDESSFSAILNACSH 610

Query: 540 VVLCN 544
             L N
Sbjct: 611 SGLLN 615



 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 124/509 (24%), Positives = 212/509 (41%), Gaps = 115/509 (22%)

Query: 14  LTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEM----P 69
           + S I  Y K G ++ A  LF  + + +VVS+N+M++G + NG       +F +M     
Sbjct: 233 VNSLIAAYFKFGGVESAHNLFDELSEPDVVSWNSMINGCVVNGFSGNGLEIFIQMLILGV 292

Query: 70  ERNVVSWTAMICGLADAGRVCEARKL----FEEMPERNVVSWNSMVVGLIRNGELNEARK 125
           E ++ +  +++   A+ G +   R L     +      VV  N+++    + G LN A +
Sbjct: 293 EVDLTTLVSVLVACANIGNLSLGRALHGFGVKACFSEEVVFSNTLLDMYSKCGNLNGATE 352

Query: 126 VFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEER----NVVTWTS---------- 171
           VF  M    ++SW ++IA YV   +  +AI LF+EM+ +    ++ T TS          
Sbjct: 353 VFVKMGDTTIVSWTSIIAAYVREGLYSDAIGLFDEMQSKGVRPDIYTVTSIVHACACSSS 412

Query: 172 -------------------------MISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGG 206
                                    +I+ Y + G VEE   +F ++P K++VSW  MIGG
Sbjct: 413 LDKGRDVHSYVIKNGMGSNLPVTNALINMYAKCGSVEEARLVFSKIPVKDIVSWNTMIGG 472

Query: 207 FAWNGFHKESLLLFIEMKG-------------------------------ICDNGNNCNV 235
           ++ N    E+L LF++M+                                I   G   ++
Sbjct: 473 YSQNLLPNEALELFLDMQKQFKPDDITMACVLPACAGLAALDKGREIHGHILRRGYFSDL 532

Query: 236 QSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDR 295
               ++++ Y + G L  AQ LFD +P +D ISWT MI GY          + F N    
Sbjct: 533 HVACALVDMYAKCGLLVLAQLLFDMIPKKDLISWTVMIAGY--------GMHGFGN---- 580

Query: 296 DAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIH 355
                              EA   F EMR  G+ P  ++FS +  A   +  ++ G +  
Sbjct: 581 -------------------EAISTFNEMRIAGIEPDESSFSAILNACSHSGLLNEGWKFF 621

Query: 356 CVLMKTESESDLILEN--CLISMYAKCGVIDNAYNIFSNM-VSRDLVSWNSMVMGFSHHG 412
              M+ E   +  LE+  C++ + A+ G +  AY    +M +  D   W  ++ G   H 
Sbjct: 622 NS-MRNECGVEPKLEHYACVVDLLARMGNLSKAYKFIESMPIKPDTTIWGVLLSGCRIHH 680

Query: 413 LANETLKVFESMLESGTHPNSVTFLGILS 441
                 KV E + E    P++  +  +L+
Sbjct: 681 DVKLAEKVAEHIFE--LEPDNTRYYVVLA 707



 Score =  108 bits (270), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 84/351 (23%), Positives = 163/351 (46%), Gaps = 61/351 (17%)

Query: 11  VVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPE 70
           VV   + +  YSK G ++ A  +F  M    +VS+ ++++ +++ G  S+A  LF+EM  
Sbjct: 331 VVFSNTLLDMYSKCGNLNGATEVFVKMGDTTIVSWTSIIAAYVREGLYSDAIGLFDEMQS 390

Query: 71  R----NVVSWTAMICGLA-----DAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELN 121
           +    ++ + T+++   A     D GR   +  +   M   N+   N+++    + G + 
Sbjct: 391 KGVRPDIYTVTSIVHACACSSSLDKGRDVHSYVIKNGMGS-NLPVTNALINMYAKCGSVE 449

Query: 122 EARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEER----------------- 164
           EAR VF+ +P+K+++SWN MI GY +  +  EA+ LF +M+++                 
Sbjct: 450 EARLVFSKIPVKDIVSWNTMIGGYSQNLLPNEALELFLDMQKQFKPDDITMACVLPACAG 509

Query: 165 ---------------------NVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAM 203
                                ++    +++  Y + G +     LF  +P+K+++SWT M
Sbjct: 510 LAALDKGREIHGHILRRGYFSDLHVACALVDMYAKCGLLVLAQLLFDMIPKKDLISWTVM 569

Query: 204 IGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPV 263
           I G+  +GF  E++  F EM+     G   +  S ++++N     G L E    F++  +
Sbjct: 570 IAGYGMHGFGNEAISTFNEMR---IAGIEPDESSFSAILNACSHSGLLNEGWKFFNS--M 624

Query: 264 RDEIS-------WTSMIDGYLSVGQVSNAYYLFHNMPDR-DAVAWTAMISG 306
           R+E         +  ++D    +G +S AY    +MP + D   W  ++SG
Sbjct: 625 RNECGVEPKLEHYACVVDLLARMGNLSKAYKFIESMPIKPDTTIWGVLLSG 675



 Score = 82.0 bits (201), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 51/191 (26%), Positives = 94/191 (49%)

Query: 265 DEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMR 324
           DE     ++  Y++ G +     +F  + +     W  ++S   +   F E+  LF +M+
Sbjct: 128 DEALGAKLVFMYVNCGDLVQGRKIFDKIMNDKVFLWNLLMSEYAKIGNFRESVSLFKKMQ 187

Query: 325 AHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVID 384
             GV     TF+ +     A   +   +++H  ++K    S+  + N LI+ Y K G ++
Sbjct: 188 KLGVVGNCYTFTCVLKCFAALGKVKECKRVHGYVLKLGFGSNTAVVNSLIAAYFKFGGVE 247

Query: 385 NAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACS 444
           +A+N+F  +   D+VSWNSM+ G   +G +   L++F  ML  G   +  T + +L AC+
Sbjct: 248 SAHNLFDELSEPDVVSWNSMINGCVVNGFSGNGLEIFIQMLILGVEVDLTTLVSVLVACA 307

Query: 445 HAGLVSRGWEL 455
           + G +S G  L
Sbjct: 308 NIGNLSLGRAL 318



 Score = 48.9 bits (115), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 49/195 (25%), Positives = 84/195 (43%), Gaps = 10/195 (5%)

Query: 331 LNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIF 390
           LN+  SVL   A    +++ G+++H V++      D  L   L+ MY  CG +     IF
Sbjct: 94  LNSYCSVLQLCA-EKKSLEDGKRVHSVIISNGISVDEALGAKLVFMYVNCGDLVQGRKIF 152

Query: 391 SNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVS 450
             +++  +  WN ++  ++  G   E++ +F+ M + G   N  TF  +L   +  G V 
Sbjct: 153 DKIMNDKVFLWNLLMSEYAKIGNFRESVSLFKKMQKLGVVGNCYTFTCVLKCFAALGKVK 212

Query: 451 RGWELFNAMFDVYKIQPGPEHYV--SMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALL 508
               +      V K+  G    V  S+I    + G ++ A      L  EPD   W +++
Sbjct: 213 ECKRVHGY---VLKLGFGSNTAVVNSLIAAYFKFGGVESAHNLFDELS-EPDVVSWNSMI 268

Query: 509 GAC---GFCEGNAEI 520
             C   GF     EI
Sbjct: 269 NGCVVNGFSGNGLEI 283


>gi|334185551|ref|NP_001189950.1| uncharacterized protein [Arabidopsis thaliana]
 gi|75274240|sp|Q9LUJ2.1|PP249_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g22690
 gi|9279687|dbj|BAB01244.1| unnamed protein product [Arabidopsis thaliana]
 gi|332643145|gb|AEE76666.1| uncharacterized protein [Arabidopsis thaliana]
          Length = 842

 Score =  300 bits (768), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 184/574 (32%), Positives = 312/574 (54%), Gaps = 20/574 (3%)

Query: 40  RNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEM 99
           +++   N+++  + + G L  AR++F+EM ERNVVSWT+MICG A      +A  LF  M
Sbjct: 167 KDLFVQNSLVHFYAECGELDSARKVFDEMSERNVVSWTSMICGYARRDFAKDAVDLFFRM 226

Query: 100 PERNVVSWNSMVVGLIRNG-----ELNEARKVF----NSMPIKNVISWNAMIAGYVECCM 150
                V+ NS+ +  + +      +L    KV+    NS    N +  +A++  Y++C  
Sbjct: 227 VRDEEVTPNSVTMVCVISACAKLEDLETGEKVYAFIRNSGIEVNDLMVSALVDMYMKCNA 286

Query: 151 MGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRM----PRKNVVSWTAMIGG 206
           +  A  LF+E    N+    +M S Y R G   E   +F  M     R + +S  + I  
Sbjct: 287 IDVAKRLFDEYGASNLDLCNAMASNYVRQGLTREALGVFNLMMDSGVRPDRISMLSAISS 346

Query: 207 FAWNGFHKESLLLFIEMKG-ICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRD 265
            +       ++L      G +  NG       CN++I+ Y++  R + A  +FD +  + 
Sbjct: 347 CS----QLRNILWGKSCHGYVLRNGFESWDNICNALIDMYMKCHRQDTAFRIFDRMSNKT 402

Query: 266 EISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRA 325
            ++W S++ GY+  G+V  A+  F  MP+++ V+W  +ISGLVQ  LF EA  +F  M++
Sbjct: 403 VVTWNSIVAGYVENGEVDAAWETFETMPEKNIVSWNTIISGLVQGSLFEEAIEVFCSMQS 462

Query: 326 H-GVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVID 384
             GV     T   +  A G    +DL + I+  + K   + D+ L   L+ M+++CG  +
Sbjct: 463 QEGVNADGVTMMSIASACGHLGALDLAKWIYYYIEKNGIQLDVRLGTTLVDMFSRCGDPE 522

Query: 385 NAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACS 444
           +A +IF+++ +RD+ +W + +   +  G A   +++F+ M+E G  P+ V F+G L+ACS
Sbjct: 523 SAMSIFNSLTNRDVSAWTAAIGAMAMAGNAERAIELFDDMIEQGLKPDGVAFVGALTACS 582

Query: 445 HAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIW 504
           H GLV +G E+F +M  ++ + P   HY  M++LLGRAG ++EA + +  +P EP+  IW
Sbjct: 583 HGGLVQQGKEIFYSMLKLHGVSPEDVHYGCMVDLLGRAGLLEEAVQLIEDMPMEPNDVIW 642

Query: 505 GALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGL 564
            +LL AC   +GN E+A +AA+++  L P    ++V+L N+YA++GR  +  K+R+ M  
Sbjct: 643 NSLLAACRV-QGNVEMAAYAAEKIQVLAPERTGSYVLLSNVYASAGRWNDMAKVRLSMKE 701

Query: 565 KGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
           KG+RK PG S +   G    F SGD+   ++  I
Sbjct: 702 KGLRKPPGTSSIQIRGKTHEFTSGDESHPEMPNI 735



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 117/485 (24%), Positives = 205/485 (42%), Gaps = 88/485 (18%)

Query: 6   HPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLF 65
           + K L V   S +  Y++ G +D A+ +F  M +RNVVS+ +M+ G+ +     +A  LF
Sbjct: 165 YAKDLFVQ-NSLVHFYAECGELDSARKVFDEMSERNVVSWTSMICGYARRDFAKDAVDLF 223

Query: 66  ------EEMPERN-----VVSWTA-------------------------MICGLADAGRV 89
                 EE+   +     V+S  A                         M+  L D    
Sbjct: 224 FRMVRDEEVTPNSVTMVCVISACAKLEDLETGEKVYAFIRNSGIEVNDLMVSALVDMYMK 283

Query: 90  CE----ARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSM--------------- 130
           C     A++LF+E    N+   N+M    +R G   EA  VFN M               
Sbjct: 284 CNAIDVAKRLFDEYGASNLDLCNAMASNYVRQGLTREALGVFNLMMDSGVRPDRISMLSA 343

Query: 131 -----PIKNVI---------------SW----NAMIAGYVECCMMGEAIVLFEEMEERNV 166
                 ++N++               SW    NA+I  Y++C     A  +F+ M  + V
Sbjct: 344 ISSCSQLRNILWGKSCHGYVLRNGFESWDNICNALIDMYMKCHRQDTAFRIFDRMSNKTV 403

Query: 167 VTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGI 226
           VTW S+++GY   GEV+  +  F  MP KN+VSW  +I G       +E++ +F  M+  
Sbjct: 404 VTWNSIVAGYVENGEVDAAWETFETMPEKNIVSWNTIISGLVQGSLFEEAIEVFCSMQS- 462

Query: 227 CDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVR----DEISWTSMIDGYLSVGQV 282
              G N +  +  S+ +     G L+ A+ ++  +       D    T+++D +   G  
Sbjct: 463 -QEGVNADGVTMMSIASACGHLGALDLAKWIYYYIEKNGIQLDVRLGTTLVDMFSRCGDP 521

Query: 283 SNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAA 342
            +A  +F+++ +RD  AWTA I  +        A  LF +M   G+ P    F     A 
Sbjct: 522 ESAMSIFNSLTNRDVSAWTAAIGAMAMAGNAERAIELFDDMIEQGLKPDGVAFVGALTAC 581

Query: 343 GATANIDLGRQIHCVLMKTESES-DLILENCLISMYAKCGVIDNAYNIFSNM-VSRDLVS 400
                +  G++I   ++K    S + +   C++ +  + G+++ A  +  +M +  + V 
Sbjct: 582 SHGGLVQQGKEIFYSMLKLHGVSPEDVHYGCMVDLLGRAGLLEEAVQLIEDMPMEPNDVI 641

Query: 401 WNSMV 405
           WNS++
Sbjct: 642 WNSLL 646



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 49/158 (31%), Positives = 84/158 (53%), Gaps = 1/158 (0%)

Query: 300 WTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLM 359
           + ++I G   + L  EA  LF+ M   G+ P   TF     A   +     G QIH +++
Sbjct: 102 YNSLIRGYASSGLCNEAILLFLRMMNSGISPDKYTFPFGLSACAKSRAKGNGIQIHGLIV 161

Query: 360 KTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLK 419
           K     DL ++N L+  YA+CG +D+A  +F  M  R++VSW SM+ G++    A + + 
Sbjct: 162 KMGYAKDLFVQNSLVHFYAECGELDSARKVFDEMSERNVVSWTSMICGYARRDFAKDAVD 221

Query: 420 VFESML-ESGTHPNSVTFLGILSACSHAGLVSRGWELF 456
           +F  M+ +    PNSVT + ++SAC+    +  G +++
Sbjct: 222 LFFRMVRDEEVTPNSVTMVCVISACAKLEDLETGEKVY 259



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 72/285 (25%), Positives = 131/285 (45%), Gaps = 18/285 (6%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWT 77
           I  Y K    D A  +F  M  + VV++N++++G+++NG +  A   FE MPE+N+VSW 
Sbjct: 379 IDMYMKCHRQDTAFRIFDRMSNKTVVTWNSIVAGYVENGEVDAAWETFETMPEKNIVSWN 438

Query: 78  AMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRN-----GELNEARKVFNSMPI 132
            +I GL       EA ++F  M  +  V+ + + +  I +     G L+ A+ ++  +  
Sbjct: 439 TIISGLVQGSLFEEAIEVFCSMQSQEGVNADGVTMMSIASACGHLGALDLAKWIYYYIE- 497

Query: 133 KNVISWN-----AMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYC 187
           KN I  +      ++  +  C     A+ +F  +  R+V  WT+ I     AG  E    
Sbjct: 498 KNGIQLDVRLGTTLVDMFSRCGDPESAMSIFNSLTNRDVSAWTAAIGAMAMAGNAERAIE 557

Query: 188 LFRRMPRKNV----VSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMIN 243
           LF  M  + +    V++   +   +  G  ++   +F  M  +  +G +        M++
Sbjct: 558 LFDDMIEQGLKPDGVAFVGALTACSHGGLVQQGKEIFYSMLKL--HGVSPEDVHYGCMVD 615

Query: 244 GYIRFGRLEEAQNLFDTVPVR-DEISWTSMIDGYLSVGQVSNAYY 287
              R G LEEA  L + +P+  +++ W S++      G V  A Y
Sbjct: 616 LLGRAGLLEEAVQLIEDMPMEPNDVIWNSLLAACRVQGNVEMAAY 660



 Score = 42.4 bits (98), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 40/173 (23%), Positives = 79/173 (45%), Gaps = 12/173 (6%)

Query: 347 NIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDN---AYNIFSNMVSR-DLVSWN 402
            ID  +  H  L K   ++D+     L++   + G  ++   A  +F N  S      +N
Sbjct: 44  TIDELKMFHRSLTKQGLDNDVSTITKLVARSCELGTRESLSFAKEVFENSESYGTCFMYN 103

Query: 403 SMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDV 462
           S++ G++  GL NE + +F  M+ SG  P+  TF   LSAC+ +     G ++      +
Sbjct: 104 SLIRGYASSGLCNEAILLFLRMMNSGISPDKYTFPFGLSACAKSRAKGNGIQIHGL---I 160

Query: 463 YKIQPGPEHYV--SMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGF 513
            K+    + +V  S+++     G++  A +    +  E +   W +++  CG+
Sbjct: 161 VKMGYAKDLFVQNSLVHFYAECGELDSARKVFDEMS-ERNVVSWTSMI--CGY 210


>gi|334185549|ref|NP_188908.2| uncharacterized protein [Arabidopsis thaliana]
 gi|332643144|gb|AEE76665.1| uncharacterized protein [Arabidopsis thaliana]
          Length = 938

 Score =  300 bits (768), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 184/574 (32%), Positives = 312/574 (54%), Gaps = 20/574 (3%)

Query: 40  RNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEM 99
           +++   N+++  + + G L  AR++F+EM ERNVVSWT+MICG A      +A  LF  M
Sbjct: 167 KDLFVQNSLVHFYAECGELDSARKVFDEMSERNVVSWTSMICGYARRDFAKDAVDLFFRM 226

Query: 100 PERNVVSWNSMVVGLIRNG-----ELNEARKVF----NSMPIKNVISWNAMIAGYVECCM 150
                V+ NS+ +  + +      +L    KV+    NS    N +  +A++  Y++C  
Sbjct: 227 VRDEEVTPNSVTMVCVISACAKLEDLETGEKVYAFIRNSGIEVNDLMVSALVDMYMKCNA 286

Query: 151 MGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRM----PRKNVVSWTAMIGG 206
           +  A  LF+E    N+    +M S Y R G   E   +F  M     R + +S  + I  
Sbjct: 287 IDVAKRLFDEYGASNLDLCNAMASNYVRQGLTREALGVFNLMMDSGVRPDRISMLSAISS 346

Query: 207 FAWNGFHKESLLLFIEMKG-ICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRD 265
            +       ++L      G +  NG       CN++I+ Y++  R + A  +FD +  + 
Sbjct: 347 CS----QLRNILWGKSCHGYVLRNGFESWDNICNALIDMYMKCHRQDTAFRIFDRMSNKT 402

Query: 266 EISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRA 325
            ++W S++ GY+  G+V  A+  F  MP+++ V+W  +ISGLVQ  LF EA  +F  M++
Sbjct: 403 VVTWNSIVAGYVENGEVDAAWETFETMPEKNIVSWNTIISGLVQGSLFEEAIEVFCSMQS 462

Query: 326 H-GVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVID 384
             GV     T   +  A G    +DL + I+  + K   + D+ L   L+ M+++CG  +
Sbjct: 463 QEGVNADGVTMMSIASACGHLGALDLAKWIYYYIEKNGIQLDVRLGTTLVDMFSRCGDPE 522

Query: 385 NAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACS 444
           +A +IF+++ +RD+ +W + +   +  G A   +++F+ M+E G  P+ V F+G L+ACS
Sbjct: 523 SAMSIFNSLTNRDVSAWTAAIGAMAMAGNAERAIELFDDMIEQGLKPDGVAFVGALTACS 582

Query: 445 HAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIW 504
           H GLV +G E+F +M  ++ + P   HY  M++LLGRAG ++EA + +  +P EP+  IW
Sbjct: 583 HGGLVQQGKEIFYSMLKLHGVSPEDVHYGCMVDLLGRAGLLEEAVQLIEDMPMEPNDVIW 642

Query: 505 GALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGL 564
            +LL AC   +GN E+A +AA+++  L P    ++V+L N+YA++GR  +  K+R+ M  
Sbjct: 643 NSLLAACRV-QGNVEMAAYAAEKIQVLAPERTGSYVLLSNVYASAGRWNDMAKVRLSMKE 701

Query: 565 KGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
           KG+RK PG S +   G    F SGD+   ++  I
Sbjct: 702 KGLRKPPGTSSIQIRGKTHEFTSGDESHPEMPNI 735



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 117/485 (24%), Positives = 205/485 (42%), Gaps = 88/485 (18%)

Query: 6   HPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLF 65
           + K L V   S +  Y++ G +D A+ +F  M +RNVVS+ +M+ G+ +     +A  LF
Sbjct: 165 YAKDLFVQ-NSLVHFYAECGELDSARKVFDEMSERNVVSWTSMICGYARRDFAKDAVDLF 223

Query: 66  ------EEMPERN-----VVSWTA-------------------------MICGLADAGRV 89
                 EE+   +     V+S  A                         M+  L D    
Sbjct: 224 FRMVRDEEVTPNSVTMVCVISACAKLEDLETGEKVYAFIRNSGIEVNDLMVSALVDMYMK 283

Query: 90  CE----ARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSM--------------- 130
           C     A++LF+E    N+   N+M    +R G   EA  VFN M               
Sbjct: 284 CNAIDVAKRLFDEYGASNLDLCNAMASNYVRQGLTREALGVFNLMMDSGVRPDRISMLSA 343

Query: 131 -----PIKNVI---------------SW----NAMIAGYVECCMMGEAIVLFEEMEERNV 166
                 ++N++               SW    NA+I  Y++C     A  +F+ M  + V
Sbjct: 344 ISSCSQLRNILWGKSCHGYVLRNGFESWDNICNALIDMYMKCHRQDTAFRIFDRMSNKTV 403

Query: 167 VTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGI 226
           VTW S+++GY   GEV+  +  F  MP KN+VSW  +I G       +E++ +F  M+  
Sbjct: 404 VTWNSIVAGYVENGEVDAAWETFETMPEKNIVSWNTIISGLVQGSLFEEAIEVFCSMQS- 462

Query: 227 CDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVR----DEISWTSMIDGYLSVGQV 282
              G N +  +  S+ +     G L+ A+ ++  +       D    T+++D +   G  
Sbjct: 463 -QEGVNADGVTMMSIASACGHLGALDLAKWIYYYIEKNGIQLDVRLGTTLVDMFSRCGDP 521

Query: 283 SNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAA 342
            +A  +F+++ +RD  AWTA I  +        A  LF +M   G+ P    F     A 
Sbjct: 522 ESAMSIFNSLTNRDVSAWTAAIGAMAMAGNAERAIELFDDMIEQGLKPDGVAFVGALTAC 581

Query: 343 GATANIDLGRQIHCVLMKTESES-DLILENCLISMYAKCGVIDNAYNIFSNM-VSRDLVS 400
                +  G++I   ++K    S + +   C++ +  + G+++ A  +  +M +  + V 
Sbjct: 582 SHGGLVQQGKEIFYSMLKLHGVSPEDVHYGCMVDLLGRAGLLEEAVQLIEDMPMEPNDVI 641

Query: 401 WNSMV 405
           WNS++
Sbjct: 642 WNSLL 646



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 49/158 (31%), Positives = 84/158 (53%), Gaps = 1/158 (0%)

Query: 300 WTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLM 359
           + ++I G   + L  EA  LF+ M   G+ P   TF     A   +     G QIH +++
Sbjct: 102 YNSLIRGYASSGLCNEAILLFLRMMNSGISPDKYTFPFGLSACAKSRAKGNGIQIHGLIV 161

Query: 360 KTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLK 419
           K     DL ++N L+  YA+CG +D+A  +F  M  R++VSW SM+ G++    A + + 
Sbjct: 162 KMGYAKDLFVQNSLVHFYAECGELDSARKVFDEMSERNVVSWTSMICGYARRDFAKDAVD 221

Query: 420 VFESML-ESGTHPNSVTFLGILSACSHAGLVSRGWELF 456
           +F  M+ +    PNSVT + ++SAC+    +  G +++
Sbjct: 222 LFFRMVRDEEVTPNSVTMVCVISACAKLEDLETGEKVY 259



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 72/285 (25%), Positives = 131/285 (45%), Gaps = 18/285 (6%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWT 77
           I  Y K    D A  +F  M  + VV++N++++G+++NG +  A   FE MPE+N+VSW 
Sbjct: 379 IDMYMKCHRQDTAFRIFDRMSNKTVVTWNSIVAGYVENGEVDAAWETFETMPEKNIVSWN 438

Query: 78  AMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRN-----GELNEARKVFNSMPI 132
            +I GL       EA ++F  M  +  V+ + + +  I +     G L+ A+ ++  +  
Sbjct: 439 TIISGLVQGSLFEEAIEVFCSMQSQEGVNADGVTMMSIASACGHLGALDLAKWIYYYIE- 497

Query: 133 KNVISWN-----AMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYC 187
           KN I  +      ++  +  C     A+ +F  +  R+V  WT+ I     AG  E    
Sbjct: 498 KNGIQLDVRLGTTLVDMFSRCGDPESAMSIFNSLTNRDVSAWTAAIGAMAMAGNAERAIE 557

Query: 188 LFRRMPRKNV----VSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMIN 243
           LF  M  + +    V++   +   +  G  ++   +F  M  +  +G +        M++
Sbjct: 558 LFDDMIEQGLKPDGVAFVGALTACSHGGLVQQGKEIFYSMLKL--HGVSPEDVHYGCMVD 615

Query: 244 GYIRFGRLEEAQNLFDTVPVR-DEISWTSMIDGYLSVGQVSNAYY 287
              R G LEEA  L + +P+  +++ W S++      G V  A Y
Sbjct: 616 LLGRAGLLEEAVQLIEDMPMEPNDVIWNSLLAACRVQGNVEMAAY 660



 Score = 42.4 bits (98), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 36/150 (24%), Positives = 69/150 (46%), Gaps = 9/150 (6%)

Query: 347 NIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDN---AYNIFSNMVSR-DLVSWN 402
            ID  +  H  L K   ++D+     L++   + G  ++   A  +F N  S      +N
Sbjct: 44  TIDELKMFHRSLTKQGLDNDVSTITKLVARSCELGTRESLSFAKEVFENSESYGTCFMYN 103

Query: 403 SMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDV 462
           S++ G++  GL NE + +F  M+ SG  P+  TF   LSAC+ +     G ++      +
Sbjct: 104 SLIRGYASSGLCNEAILLFLRMMNSGISPDKYTFPFGLSACAKSRAKGNGIQIHGL---I 160

Query: 463 YKIQPGPEHYV--SMINLLGRAGKIKEAEE 490
            K+    + +V  S+++     G++  A +
Sbjct: 161 VKMGYAKDLFVQNSLVHFYAECGELDSARK 190


>gi|224122590|ref|XP_002330519.1| predicted protein [Populus trichocarpa]
 gi|222872453|gb|EEF09584.1| predicted protein [Populus trichocarpa]
          Length = 726

 Score =  300 bits (767), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 189/621 (30%), Positives = 316/621 (50%), Gaps = 57/621 (9%)

Query: 30  AKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPE----------RNVVSWTA- 78
           A+ LF  MP++N VS+NA+L+G+ Q G   +  +LF +M E            V+   A 
Sbjct: 4   AERLFFGMPEKNGVSWNALLNGYAQLGDGKKVLKLFCKMKECETKFSKFTLSTVLKGCAN 63

Query: 79  ------------------------MICGLAD----AGRVCEARKLFEEMPERNVVSWNSM 110
                                   + C L D     G V +A K+F ++   +VV+W++M
Sbjct: 64  TGSLREGKVLHALALRSGCEIDEFLGCSLVDMYSKCGTVYDALKVFTKIRNPDVVAWSAM 123

Query: 111 VVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCM------MGEAI---VLFEEM 161
           + GL + G   EA ++F+ M  K        ++  V           G++I   +     
Sbjct: 124 ITGLDQQGHGQEAAELFHLMRRKGARPNQFTLSSLVSTATNMGDLRYGQSIHGCICKYGF 183

Query: 162 EERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFI 221
           E  N+V+   +I  Y ++  VE+G  +F  M   ++VSW A++ GF  +        +F 
Sbjct: 184 ESDNLVS-NPLIMMYMKSRCVEDGNKVFEAMTNPDLVSWNALLSGFYDSQTCGRGPRIFY 242

Query: 222 EM--KGICDNGNN--CNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYL 277
           +M  +G   N       ++SC+S+++    FG+   A ++       D+   T+++D Y 
Sbjct: 243 QMLLEGFKPNMFTFISVLRSCSSLLDP--EFGKQVHA-HIIKNSSDDDDFVGTALVDMYA 299

Query: 278 SVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSV 337
               + +A   F  + +RD  +WT +ISG  Q +   +A   F +M+  G+ P   T + 
Sbjct: 300 KARCLEDAGVAFDRLVNRDIFSWTVIISGYAQTDQAEKAVKYFRQMQREGIKPNEYTLAS 359

Query: 338 LFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRD 397
                   A ++ GRQ+H V +K     D+ + + L+ +Y KCG +++A  IF  ++SRD
Sbjct: 360 CLSGCSHMATLENGRQLHAVAVKAGHFGDIFVGSALVDLYGKCGCMEHAEAIFKGLISRD 419

Query: 398 LVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFN 457
           +VSWN+++ G+S HG   + L+ F  ML  G  P+  TF+G+LSACS  GLV  G + F+
Sbjct: 420 IVSWNTIISGYSQHGQGEKALEAFRMMLSEGIMPDEATFIGVLSACSFMGLVEEGKKRFD 479

Query: 458 AMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGN 517
           +M  +Y I P  EHY  M+++LGRAGK  E + F+  +   P   IW  +LGAC    GN
Sbjct: 480 SMSKIYGINPSIEHYACMVDILGRAGKFNEVKIFIEEMNLTPYSLIWETVLGACKL-HGN 538

Query: 518 AEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLM 577
            +  E AAK+L E++P+   ++++L NI+A+ GR  +   +R  M  +G++K PGCSW+ 
Sbjct: 539 VDFGEKAAKKLFEMEPMMDSSYILLSNIFASKGRWDDVRNIRALMTSRGIKKEPGCSWVE 598

Query: 578 RNGGIQMFLSGDKIPAQVAEI 598
            +G + +FLS D    ++ EI
Sbjct: 599 VDGQVHVFLSQDGSHPKIREI 619



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 87/394 (22%), Positives = 171/394 (43%), Gaps = 64/394 (16%)

Query: 16  SSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPER---- 71
           S +  YSK G + +A  +F  +   +VV+++AM++G  Q G   EA  LF  M  +    
Sbjct: 91  SLVDMYSKCGTVYDALKVFTKIRNPDVVAWSAMITGLDQQGHGQEAAELFHLMRRKGARP 150

Query: 72  NVVSWTAMICGLADAGRV--------CEARKLFEEMPERNVVSWNSMVVGLIRNGELNEA 123
           N  + ++++    + G +        C  +  FE     N+VS N +++  +++  + + 
Sbjct: 151 NQFTLSSLVSTATNMGDLRYGQSIHGCICKYGFE---SDNLVS-NPLIMMYMKSRCVEDG 206

Query: 124 RKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEM---------------------- 161
            KVF +M   +++SWNA+++G+ +    G    +F +M                      
Sbjct: 207 NKVFEAMTNPDLVSWNALLSGFYDSQTCGRGPRIFYQMLLEGFKPNMFTFISVLRSCSSL 266

Query: 162 -----------------EERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMI 204
                             + +    T+++  Y +A  +E+    F R+  +++ SWT +I
Sbjct: 267 LDPEFGKQVHAHIIKNSSDDDDFVGTALVDMYAKARCLEDAGVAFDRLVNRDIFSWTVII 326

Query: 205 GGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVR 264
            G+A     ++++  F +M+      N   + SC   ++G      LE  + L   V V+
Sbjct: 327 SGYAQTDQAEKAVKYFRQMQREGIKPNEYTLASC---LSGCSHMATLENGRQL-HAVAVK 382

Query: 265 -----DEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYL 319
                D    ++++D Y   G + +A  +F  +  RD V+W  +ISG  Q+    +A   
Sbjct: 383 AGHFGDIFVGSALVDLYGKCGCMEHAEAIFKGLISRDIVSWNTIISGYSQHGQGEKALEA 442

Query: 320 FMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQ 353
           F  M + G+ P  ATF  +  A      ++ G++
Sbjct: 443 FRMMLSEGIMPDEATFIGVLSACSFMGLVEEGKK 476



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 39/192 (20%), Positives = 87/192 (45%), Gaps = 12/192 (6%)

Query: 15  TSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPER--- 71
           T+ +  Y+K   +++A   F  +  R++ S+  ++SG+ Q  +  +A + F +M      
Sbjct: 292 TALVDMYAKARCLEDAGVAFDRLVNRDIFSWTVIISGYAQTDQAEKAVKYFRQMQREGIK 351

Query: 72  -NVVSWTAMICGLADAGRVCEARKLFEEMPER----NVVSWNSMVVGLIRNGELNEARKV 126
            N  +  + + G +    +   R+L     +     ++   +++V    + G +  A  +
Sbjct: 352 PNEYTLASCLSGCSHMATLENGRQLHAVAVKAGHFGDIFVGSALVDLYGKCGCMEHAEAI 411

Query: 127 FNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVV----TWTSMISGYCRAGEV 182
           F  +  ++++SWN +I+GY +     +A+  F  M    ++    T+  ++S     G V
Sbjct: 412 FKGLISRDIVSWNTIISGYSQHGQGEKALEAFRMMLSEGIMPDEATFIGVLSACSFMGLV 471

Query: 183 EEGYCLFRRMPR 194
           EEG   F  M +
Sbjct: 472 EEGKKRFDSMSK 483



 Score = 48.9 bits (115), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 34/119 (28%), Positives = 60/119 (50%), Gaps = 9/119 (7%)

Query: 21  YSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMI 80
           Y K G ++ A+A+F+ +  R++VS+N ++SG+ Q+G+  +A   F  M    ++   A  
Sbjct: 399 YGKCGCMEHAEAIFKGLISRDIVSWNTIISGYSQHGQGEKALEAFRMMLSEGIMPDEATF 458

Query: 81  CGLADA----GRVCEARKLFEEMPE-----RNVVSWNSMVVGLIRNGELNEARKVFNSM 130
            G+  A    G V E +K F+ M +      ++  +  MV  L R G+ NE +     M
Sbjct: 459 IGVLSACSFMGLVEEGKKRFDSMSKIYGINPSIEHYACMVDILGRAGKFNEVKIFIEEM 517


>gi|297804280|ref|XP_002870024.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297315860|gb|EFH46283.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 871

 Score =  300 bits (767), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 172/542 (31%), Positives = 289/542 (53%), Gaps = 18/542 (3%)

Query: 70  ERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNS 129
           ERN V   +++       RV  ARK+F+EM ER+V+SWNS++ G + NG   +   VF  
Sbjct: 228 ERNSVG-NSLVAFYLKNHRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQ 286

Query: 130 MPIKNV-ISWNAMIAGYVECC-----MMGEAIVLF--EEMEERNVVTWTSMISGYCRAGE 181
           M    + I    +++ +  C       +G A+  F  +    R      +++  Y + G+
Sbjct: 287 MLFSGIEIDLATIVSVFAGCADSRLISLGRAVHCFGVKACFSREDRFCNTLLDMYSKCGD 346

Query: 182 VEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSM 241
           ++    +FR M  ++VVS+T+MI G+A  G   E++ LF EM+   + G + +V +  ++
Sbjct: 347 LDSAKVVFREMSGRSVVSYTSMIAGYAREGLAGEAVKLFEEME---EEGISPDVYTVTAV 403

Query: 242 INGYIRFGRLEEAQNLFDTVPVRDE----ISWTSMIDGYLSVGQVSNAYYLFHNMPDRDA 297
           +N   R   L+E + + + +   D         +++D Y   G +  A  +F  M  +D 
Sbjct: 404 LNCCARNRLLDEGKRVHEWIKENDMGFDIFVSNALMDMYAKCGSMREAELVFSEMRVKDI 463

Query: 298 VAWTAMISGLVQNELFVEATYLF-MEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHC 356
           ++W  +I G  +N    EA  LF + +      P   T + +  A  + +  D GR+IH 
Sbjct: 464 ISWNTVIGGYSKNCYANEALSLFNLLLVEKRFSPDERTVACVLPACASLSAFDKGREIHG 523

Query: 357 VLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANE 416
            +M+    SD  + N L+ MYAKCG +  A  +F ++ S+DLVSW  M+ G+  HG   E
Sbjct: 524 YIMRNGYFSDRHVANSLVDMYAKCGALLLARLLFDDITSKDLVSWTVMIAGYGMHGFGKE 583

Query: 417 TLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMI 476
            + +F  M ++G  P+ ++F+ +L ACSH+GLV  GW  FN M    KI+P  EHY  ++
Sbjct: 584 AIALFNQMRQAGIEPDEISFVSLLYACSHSGLVDEGWRFFNIMRHECKIEPTVEHYACIV 643

Query: 477 NLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNA 536
           ++L R G + +A  F+  +P  PD  IWGALL  C     + ++AE  A+++ EL+P N 
Sbjct: 644 DMLARTGNLSKAYRFIENMPIPPDATIWGALLCGCRI-HHDVKLAERVAEKVFELEPENT 702

Query: 537 PAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVA 596
             +V++ NIYA + +  E  +LR  +G +G+RK PGCSW+   G + +F++GD    +  
Sbjct: 703 GYYVLMANIYAEAEKWEEVKRLRKRIGQRGLRKNPGCSWIEIKGRVNIFVAGDSSNPETE 762

Query: 597 EI 598
           +I
Sbjct: 763 KI 764



 Score =  142 bits (357), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 121/475 (25%), Positives = 213/475 (44%), Gaps = 77/475 (16%)

Query: 16  SSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEM----PER 71
           S +  Y K   +D A+ +F  M +R+V+S+N++++G++ NG   +   +F +M     E 
Sbjct: 235 SLVAFYLKNHRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLFSGIEI 294

Query: 72  NVVSWTAMICGLADAGRVCEARKL----FEEMPERNVVSWNSMVVGLIRNGELNEARKVF 127
           ++ +  ++  G AD+  +   R +     +    R     N+++    + G+L+ A+ VF
Sbjct: 295 DLATIVSVFAGCADSRLISLGRAVHCFGVKACFSREDRFCNTLLDMYSKCGDLDSAKVVF 354

Query: 128 NSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEE------------------------ 163
             M  ++V+S+ +MIAGY    + GEA+ LFEEMEE                        
Sbjct: 355 REMSGRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARNRLLD 414

Query: 164 --RNVVTW-------------TSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFA 208
             + V  W              +++  Y + G + E   +F  M  K+++SW  +IGG++
Sbjct: 415 EGKRVHEWIKENDMGFDIFVSNALMDMYAKCGSMREAELVFSEMRVKDIISWNTVIGGYS 474

Query: 209 WNGFHKESL----LLFIEMKGICDNGN-NCNVQSCNSM--------INGYI-RFGRLEEA 254
            N +  E+L    LL +E +   D     C + +C S+        I+GYI R G     
Sbjct: 475 KNCYANEALSLFNLLLVEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMRNGYFS-- 532

Query: 255 QNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFV 314
                     D     S++D Y   G +  A  LF ++  +D V+WT MI+G   +    
Sbjct: 533 ----------DRHVANSLVDMYAKCGALLLARLLFDDITSKDLVSWTVMIAGYGMHGFGK 582

Query: 315 EATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILEN--C 372
           EA  LF +MR  G+ P   +F  L  A   +  +D G +   + M+ E + +  +E+  C
Sbjct: 583 EAIALFNQMRQAGIEPDEISFVSLLYACSHSGLVDEGWRFFNI-MRHECKIEPTVEHYAC 641

Query: 373 LISMYAKCGVIDNAYNIFSNM-VSRDLVSWNSMVMGFSHHGLANETLKVFESMLE 426
           ++ M A+ G +  AY    NM +  D   W +++ G   H       +V E + E
Sbjct: 642 IVDMLARTGNLSKAYRFIENMPIPPDATIWGALLCGCRIHHDVKLAERVAEKVFE 696



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 119/492 (24%), Positives = 213/492 (43%), Gaps = 67/492 (13%)

Query: 20  KYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAM 79
           + S R   D A ++      R+V   N  L  F ++G L  A +L     + ++   T  
Sbjct: 41  RASLRTVSDRADSITTF--DRSVTDANTQLRRFCESGNLKNAVKLLHVSGKWDIDPRT-- 96

Query: 80  ICGLADAGRVCEARKLFEEMPE-RNVVSWNSMVVG----------LIRNGELNEARKVFN 128
              L    ++C   K  ++  E  N +  N  V+               G+L EA +VF+
Sbjct: 97  ---LCSVLQLCADSKSLKDGKEVDNFIRGNGFVLDSNLGSKLALMYTNCGDLKEASRVFD 153

Query: 129 SMPIKNVISWNAMIAGYVECCMMGEAIVLFEEM--------------------------- 161
            + I+  + WN ++    +      +I LF++M                           
Sbjct: 154 QVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSVNG 213

Query: 162 -------------EERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFA 208
                         ERN V   S+++ Y +   V+    +F  M  ++V+SW ++I G+ 
Sbjct: 214 GEQLHGYILKSGFGERNSVG-NSLVAFYLKNHRVDSARKVFDEMTERDVISWNSIINGYV 272

Query: 209 WNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYI--RFGRLEEAQNLFDTVPV--R 264
            NG  ++ L +F++M     +G   ++ +  S+  G    R   L  A + F       R
Sbjct: 273 SNGLAEKGLSVFVQM---LFSGIEIDLATIVSVFAGCADSRLISLGRAVHCFGVKACFSR 329

Query: 265 DEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMR 324
           ++    +++D Y   G + +A  +F  M  R  V++T+MI+G  +  L  EA  LF EM 
Sbjct: 330 EDRFCNTLLDMYSKCGDLDSAKVVFREMSGRSVVSYTSMIAGYAREGLAGEAVKLFEEME 389

Query: 325 AHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVID 384
             G+ P   T + +         +D G+++H  + + +   D+ + N L+ MYAKCG + 
Sbjct: 390 EEGISPDVYTVTAVLNCCARNRLLDEGKRVHEWIKENDMGFDIFVSNALMDMYAKCGSMR 449

Query: 385 NAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESML-ESGTHPNSVTFLGILSAC 443
            A  +FS M  +D++SWN+++ G+S +  ANE L +F  +L E    P+  T   +L AC
Sbjct: 450 EAELVFSEMRVKDIISWNTVIGGYSKNCYANEALSLFNLLLVEKRFSPDERTVACVLPAC 509

Query: 444 SHAGLVSRGWEL 455
           +      +G E+
Sbjct: 510 ASLSAFDKGREI 521



 Score = 42.4 bits (98), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 49/217 (22%), Positives = 90/217 (41%), Gaps = 23/217 (10%)

Query: 11  VVHLTSSITKYSKRGFIDEAKALFQLM-------PQRNVVS----YNAMLSGFLQNGRLS 59
           ++   + I  YSK  + +EA +LF L+       P    V+      A LS F +   + 
Sbjct: 463 IISWNTVIGGYSKNCYANEALSLFNLLLVEKRFSPDERTVACVLPACASLSAFDKGREIH 522

Query: 60  EARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGE 119
                     +R+V +  +++   A  G +  AR LF+++  +++VSW  M+ G   +G 
Sbjct: 523 GYIMRNGYFSDRHVAN--SLVDMYAKCGALLLARLLFDDITSKDLVSWTVMIAGYGMHGF 580

Query: 120 LNEARKVFNSMPIKNV----ISWNAMIAGYVECCMMGEAIVLFEEME-----ERNVVTWT 170
             EA  +FN M    +    IS+ +++       ++ E    F  M      E  V  + 
Sbjct: 581 GKEAIALFNQMRQAGIEPDEISFVSLLYACSHSGLVDEGWRFFNIMRHECKIEPTVEHYA 640

Query: 171 SMISGYCRAGEVEEGYCLFRRMP-RKNVVSWTAMIGG 206
            ++    R G + + Y     MP   +   W A++ G
Sbjct: 641 CIVDMLARTGNLSKAYRFIENMPIPPDATIWGALLCG 677


>gi|347954542|gb|AEP33771.1| organelle transcript processing 82, partial [Thlaspi arvense]
          Length = 673

 Score =  300 bits (767), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 185/552 (33%), Positives = 290/552 (52%), Gaps = 18/552 (3%)

Query: 61  ARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPE----RNVVSWNSMVVGLIR 116
           A  +F  + E N + W  M+ G A +     A KL+  M       N  ++  ++    +
Sbjct: 19  AISVFATIQEPNQLIWNTMLRGYALSSDPVSALKLYVVMISLGLLPNSYTFPFLLKSCAK 78

Query: 117 NGELNEARKVFNSMPI----KNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSM 172
           +    E +++   +       ++    ++I+ Y +   + +A  +F+    R+VV++T++
Sbjct: 79  SKAFEEGQQIHGHVLKLGYEPDLYVHTSLISMYAQNGRLEDAHKVFDRSSHRDVVSYTAL 138

Query: 173 ISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGI---CDN 229
           I+GY  +G +     +F  +P K+VVSW AMI G+A  G +KE+L LF EM       D 
Sbjct: 139 ITGYASSGNIRSAQEMFDEIPVKDVVSWNAMISGYAETGSYKEALELFKEMMKTNVRPDE 198

Query: 230 GNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWT-SMIDGYLSVGQVSNAYYL 288
           G    V S  +     +  GR  +  +  D       +    ++ID Y   GQV  A  L
Sbjct: 199 GTMVTVLSACAQSRS-VELGR--QVHSWIDDHGFGSNLKIVNALIDLYSKCGQVETACGL 255

Query: 289 FHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANI 348
           F  +  +D V+W  +I G     L+ EA  LF EM   G  P + T   +  A      I
Sbjct: 256 FEGLSCKDVVSWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTIVSILPACAHLGAI 315

Query: 349 DLGRQIHCVLMKT--ESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVM 406
           D+GR IH  + K   +  +   L   LI MYAKCG I+ A+ +F++M+ + L SWN+M+ 
Sbjct: 316 DIGRWIHVYIDKKLKDVTNAPSLRTSLIDMYAKCGDIEAAHQVFNSMLHKSLSSWNAMIF 375

Query: 407 GFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQ 466
           GF+ HG AN    +F  M ++G  P+ +TF+G+LSACSH+G +  G  +F +M   Y I 
Sbjct: 376 GFAMHGRANAGFDLFSRMRKNGIEPDDITFVGLLSACSHSGKLDLGRHIFKSMTQDYDIT 435

Query: 467 PGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAK 526
           P  EHY  MI+LLG +G  KEA+E +  +P EPD  IW +LL AC    GN E+AE  A+
Sbjct: 436 PKLEHYGCMIDLLGHSGLFKEAKEMIKTMPMEPDGVIWCSLLKACRR-HGNLELAESFAR 494

Query: 527 RLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFL 586
            L++++P N  ++V+L NIYA +G   E  K+R  +  KG++KVPGCS +  +  +  F+
Sbjct: 495 NLMKVEPENPGSYVLLSNIYATAGEWDEVAKVRALLNGKGMKKVPGCSSIEIDSEVHEFI 554

Query: 587 SGDKIPAQVAEI 598
            GDK+  +  EI
Sbjct: 555 VGDKLHPRNREI 566



 Score =  169 bits (429), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 112/400 (28%), Positives = 195/400 (48%), Gaps = 27/400 (6%)

Query: 33  LFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEA 92
           + +L  + ++  + +++S + QNGRL +A ++F+    R+VVS+TA+I G A +G +  A
Sbjct: 92  VLKLGYEPDLYVHTSLISMYAQNGRLEDAHKVFDRSSHRDVVSYTALITGYASSGNIRSA 151

Query: 93  RKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMG 152
           +++F+E+P ++VVSWN+M+ G    G   EA ++F  M   NV      +   +  C   
Sbjct: 152 QEMFDEIPVKDVVSWNAMISGYAETGSYKEALELFKEMMKTNVRPDEGTMVTVLSACAQS 211

Query: 153 EAIVLFEEMEE--------RNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMI 204
            ++ L  ++           N+    ++I  Y + G+VE    LF  +  K+VVSW  +I
Sbjct: 212 RSVELGRQVHSWIDDHGFGSNLKIVNALIDLYSKCGQVETACGLFEGLSCKDVVSWNTLI 271

Query: 205 GGFAWNGFHKESLLLFIEMKGICDNGNNCNVQS----CNSMINGYIRFGRL------EEA 254
           GG+     +KE+LLLF EM    ++ N+  + S    C  +  G I  GR       ++ 
Sbjct: 272 GGYTHMNLYKEALLLFQEMLRSGESPNDVTIVSILPACAHL--GAIDIGRWIHVYIDKKL 329

Query: 255 QNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFV 314
           +++ +   +R     TS+ID Y   G +  A+ +F++M  +   +W AMI G   +    
Sbjct: 330 KDVTNAPSLR-----TSLIDMYAKCGDIEAAHQVFNSMLHKSLSSWNAMIFGFAMHGRAN 384

Query: 315 EATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKT-ESESDLILENCL 373
               LF  MR +G+ P + TF  L  A   +  +DLGR I   + +  +    L    C+
Sbjct: 385 AGFDLFSRMRKNGIEPDDITFVGLLSACSHSGKLDLGRHIFKSMTQDYDITPKLEHYGCM 444

Query: 374 ISMYAKCGVIDNAYNIFSNM-VSRDLVSWNSMVMGFSHHG 412
           I +    G+   A  +   M +  D V W S++     HG
Sbjct: 445 IDLLGHSGLFKEAKEMIKTMPMEPDGVIWCSLLKACRRHG 484



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 103/384 (26%), Positives = 172/384 (44%), Gaps = 90/384 (23%)

Query: 9   SLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEM 68
            L VH TS I+ Y++ G +++A  +F     R+VVSY A+++G+  +G +  A+ +F+E+
Sbjct: 100 DLYVH-TSLISMYAQNGRLEDAHKVFDRSSHRDVVSYTALITGYASSGNIRSAQEMFDEI 158

Query: 69  PERNVVSWTAMICGLADAGRVCEARKLFEEM------PE--------------------R 102
           P ++VVSW AMI G A+ G   EA +LF+EM      P+                    R
Sbjct: 159 PVKDVVSWNAMISGYAETGSYKEALELFKEMMKTNVRPDEGTMVTVLSACAQSRSVELGR 218

Query: 103 NVVSW-------------NSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECC 149
            V SW             N+++    + G++  A  +F  +  K+V+SWN +I GY    
Sbjct: 219 QVHSWIDDHGFGSNLKIVNALIDLYSKCGQVETACGLFEGLSCKDVVSWNTLIGGYTHMN 278

Query: 150 MMGEAIVLFEEM----EERNVVT------------------W------------------ 169
           +  EA++LF+EM    E  N VT                  W                  
Sbjct: 279 LYKEALLLFQEMLRSGESPNDVTIVSILPACAHLGAIDIGRWIHVYIDKKLKDVTNAPSL 338

Query: 170 -TSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICD 228
            TS+I  Y + G++E  + +F  M  K++ SW AMI GFA +G       LF  M+    
Sbjct: 339 RTSLIDMYAKCGDIEAAHQVFNSMLHKSLSSWNAMIFGFAMHGRANAGFDLFSRMR---K 395

Query: 229 NGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEIS-----WTSMIDGYLSVGQVS 283
           NG   +  +   +++     G+L+  +++F ++    +I+     +  MID     G   
Sbjct: 396 NGIEPDDITFVGLLSACSHSGKLDLGRHIFKSMTQDYDITPKLEHYGCMIDLLGHSGLFK 455

Query: 284 NAYYLFHNMP-DRDAVAWTAMISG 306
            A  +   MP + D V W +++  
Sbjct: 456 EAKEMIKTMPMEPDGVIWCSLLKA 479



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 43/187 (22%), Positives = 92/187 (49%), Gaps = 21/187 (11%)

Query: 15  TSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNV- 73
           TS I  Y+K G I+ A  +F  M  +++ S+NAM+ GF  +GR +    LF  M +  + 
Sbjct: 340 TSLIDMYAKCGDIEAAHQVFNSMLHKSLSSWNAMIFGFAMHGRANAGFDLFSRMRKNGIE 399

Query: 74  ---VSWTAMICGLADAGRVCEARKLFEEMPERNVVS-----WNSMVVGLIRNGELNEARK 125
              +++  ++   + +G++   R +F+ M +   ++     +  M+  L  +G   EA++
Sbjct: 400 PDDITFVGLLSACSHSGKLDLGRHIFKSMTQDYDITPKLEHYGCMIDLLGHSGLFKEAKE 459

Query: 126 VFNSMPIK-NVISWNAMIAGYVECCMMGEAIVLFE-------EMEERNVVTWTSMISGYC 177
           +  +MP++ + + W +++    + C     + L E       ++E  N  ++  + + Y 
Sbjct: 460 MIKTMPMEPDGVIWCSLL----KACRRHGNLELAESFARNLMKVEPENPGSYVLLSNIYA 515

Query: 178 RAGEVEE 184
            AGE +E
Sbjct: 516 TAGEWDE 522


>gi|449435936|ref|XP_004135750.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21300-like [Cucumis sativus]
          Length = 762

 Score =  300 bits (767), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 197/647 (30%), Positives = 325/647 (50%), Gaps = 74/647 (11%)

Query: 15  TSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMP----E 70
           +S I  Y++ G + +A+ LF  +PQ++ V +N ML+G+++NG    A ++F EM     +
Sbjct: 97  SSLIKLYAENGHLSDAQYLFDNIPQKDSVLWNVMLNGYVKNGDSGNAIKIFLEMRHSEIK 156

Query: 71  RNVVSWT---------------------AMICGLADAGRV----------CE----ARKL 95
            N V++                      A+ CGL     V          C+    ARKL
Sbjct: 157 PNSVTFACVLSVCASEAMLDLGTQLHGIAVSCGLELDSPVANTLLAMYSKCQCLQAARKL 216

Query: 96  FEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECC------ 149
           F+  P+ ++VSWN ++ G ++NG + EA  +F  M    +   +   A ++ C       
Sbjct: 217 FDTSPQSDLVSWNGIISGYVQNGLMGEAEHLFRGMISAGIKPDSITFASFLPCVNELLSL 276

Query: 150 ---------MMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSW 200
                    ++  A+VL       +V   +++I  Y +  +VE    +  +    + V  
Sbjct: 277 KHCKEIHGYIIRHAVVL-------DVFLKSALIDIYFKCRDVEMAQKILCQSSSFDTVVC 329

Query: 201 TAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDT 260
           T MI G+  NG +KE+L  F   + +          + +S+   +     L   + L  +
Sbjct: 330 TTMISGYVLNGKNKEALEAF---RWLVQERMKPTSVTFSSIFPAFAGLAALNLGKELHGS 386

Query: 261 VPVRDEIS-----WTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVE 315
           + ++ ++       ++++D Y   G++  A  +F+ + ++DA+ W +MI+   QN    E
Sbjct: 387 I-IKTKLDEKCHVGSAILDMYAKCGRLDLACRVFNRITEKDAICWNSMITSCSQNGRPGE 445

Query: 316 ATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLIS 375
           A  LF +M   G      + S    A      +  G++IH +++K    SDL  E+ LI 
Sbjct: 446 AINLFRQMGMEGTRYDCVSISGALSACANLPALHYGKEIHGLMIKGPLRSDLYAESSLID 505

Query: 376 MYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVT 435
           MYAKCG ++ +  +F  M  R+ VSWNS++  + +HG   E L +F  ML +G  P+ VT
Sbjct: 506 MYAKCGNLNFSRRVFDRMQERNEVSWNSIISAYGNHGDLKECLALFHEMLRNGIQPDHVT 565

Query: 436 FLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRL 495
           FLGI+SAC HAG V  G   ++ M + Y I    EHY  + ++ GRAG++ EA E +  +
Sbjct: 566 FLGIISACGHAGQVDEGIRYYHLMTEEYGIPARMEHYACVADMFGRAGRLDEAFETINSM 625

Query: 496 PFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEE 555
           PF PD  +WG LLGAC    GN E+AE A+K L +LDPLN+  +V+L N+ A +G+  + 
Sbjct: 626 PFPPDAGVWGTLLGACHI-HGNVELAEVASKHLFDLDPLNSGYYVLLANVQAGAGKWRKV 684

Query: 556 HKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGD---KIPAQVAEIL 599
            K+R  M  +GVRKVPG SW+  N    MF++ D    + AQ+  +L
Sbjct: 685 LKVRSIMKERGVRKVPGYSWIEVNNATHMFVAADGSHPLTAQIYSVL 731



 Score =  158 bits (400), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 139/574 (24%), Positives = 240/574 (41%), Gaps = 83/574 (14%)

Query: 21  YSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEM------PERNVV 74
           Y + G + +AK LF  +      ++N M+ GF   G+ + A   + +M      P++   
Sbjct: 2   YVRTGSLKDAKNLFYTLQLGCTSAWNWMIRGFTMMGQFNYALLFYLKMLGAGVSPDKYTF 61

Query: 75  SWTA-MICGLADA--GRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMP 131
            +     CGL     G++         + E +V   +S++     NG L++A+ +F+++P
Sbjct: 62  PYVVKACCGLKSVKMGKIVHETVNLMGLKE-DVFVGSSLIKLYAENGHLSDAQYLFDNIP 120

Query: 132 IKNVISWNAMIAGYVECCMMGEAIVLFEEME----ERNVVTWT----------------- 170
            K+ + WN M+ GYV+    G AI +F EM     + N VT+                  
Sbjct: 121 QKDSVLWNVMLNGYVKNGDSGNAIKIFLEMRHSEIKPNSVTFACVLSVCASEAMLDLGTQ 180

Query: 171 ------------------SMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGF 212
                             ++++ Y +   ++    LF   P+ ++VSW  +I G+  NG 
Sbjct: 181 LHGIAVSCGLELDSPVANTLLAMYSKCQCLQAARKLFDTSPQSDLVSWNGIISGYVQNGL 240

Query: 213 HKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQN-LFDTVPVRDEISWTS 271
             E+  LF  M       ++    S    +N  +     +E    +     V D    ++
Sbjct: 241 MGEAEHLFRGMISAGIKPDSITFASFLPCVNELLSLKHCKEIHGYIIRHAVVLDVFLKSA 300

Query: 272 MIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPL 331
           +ID Y     V  A  +       D V  T MISG V N    EA   F  +    + P 
Sbjct: 301 LIDIYFKCRDVEMAQKILCQSSSFDTVVCTTMISGYVLNGKNKEALEAFRWLVQERMKPT 360

Query: 332 NATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFS 391
           + TFS +F A    A ++LG+++H  ++KT+ +    + + ++ MYAKCG +D A  +F+
Sbjct: 361 SVTFSSIFPAFAGLAALNLGKELHGSIIKTKLDEKCHVGSAILDMYAKCGRLDLACRVFN 420

Query: 392 NMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSR 451
            +  +D + WNSM+   S +G   E + +F  M   GT  + V+  G LSAC++   +  
Sbjct: 421 RITEKDAICWNSMITSCSQNGRPGEAINLFRQMGMEGTRYDCVSISGALSACANLPALHY 480

Query: 452 GWELFNAMF------DVYKIQPGPEHYV------------------------SMINLLGR 481
           G E+   M       D+Y      + Y                         S+I+  G 
Sbjct: 481 GKEIHGLMIKGPLRSDLYAESSLIDMYAKCGNLNFSRRVFDRMQERNEVSWNSIISAYGN 540

Query: 482 AGKIKEAEEF---VLRLPFEPDHRIWGALLGACG 512
            G +KE       +LR   +PDH  +  ++ ACG
Sbjct: 541 HGDLKECLALFHEMLRNGIQPDHVTFLGIISACG 574



 Score = 88.6 bits (218), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 95/433 (21%), Positives = 197/433 (45%), Gaps = 35/433 (8%)

Query: 7   PKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFL----QNGRLSEAR 62
           P+S +V     I+ Y + G + EA+ LF+ M    +   +   + FL    +   L   +
Sbjct: 221 PQSDLVSWNGIISGYVQNGLMGEAEHLFRGMISAGIKPDSITFASFLPCVNELLSLKHCK 280

Query: 63  RLFEEMPERNVVSWTAMICGLADAGRVCE----ARKLFEEMPERNVVSWNSMVVGLIRNG 118
            +   +    VV    +   L D    C     A+K+  +    + V   +M+ G + NG
Sbjct: 281 EIHGYIIRHAVVLDVFLKSALIDIYFKCRDVEMAQKILCQSSSFDTVVCTTMISGYVLNG 340

Query: 119 ELNEARKVFNSMPIKNV----ISWNAMIAGY--VECCMMGEAI---VLFEEMEERNVVTW 169
           +  EA + F  +  + +    ++++++   +  +    +G+ +   ++  +++E+  V  
Sbjct: 341 KNKEALEAFRWLVQERMKPTSVTFSSIFPAFAGLAALNLGKELHGSIIKTKLDEKCHVG- 399

Query: 170 TSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDN 229
           ++++  Y + G ++    +F R+  K+ + W +MI   + NG   E++ LF +M G+   
Sbjct: 400 SAILDMYAKCGRLDLACRVFNRITEKDAICWNSMITSCSQNGRPGEAINLFRQM-GMEGT 458

Query: 230 GNNC-----NVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEI-SWTSMIDGYLSVGQVS 283
             +C      + +C ++    + +G+  E   L    P+R ++ + +S+ID Y   G ++
Sbjct: 459 RYDCVSISGALSACANL--PALHYGK--EIHGLMIKGPLRSDLYAESSLIDMYAKCGNLN 514

Query: 284 NAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAG 343
            +  +F  M +R+ V+W ++IS    +    E   LF EM  +G+ P + TF  +  A G
Sbjct: 515 FSRRVFDRMQERNEVSWNSIISAYGNHGDLKECLALFHEMLRNGIQPDHVTFLGIISACG 574

Query: 344 ATANIDLG-RQIHCVLMKTESESDLILEN--CLISMYAKCGVIDNAYNIFSNM-VSRDLV 399
               +D G R  H  LM  E      +E+  C+  M+ + G +D A+   ++M    D  
Sbjct: 575 HAGQVDEGIRYYH--LMTEEYGIPARMEHYACVADMFGRAGRLDEAFETINSMPFPPDAG 632

Query: 400 SWNSMVMGFSHHG 412
            W +++     HG
Sbjct: 633 VWGTLLGACHIHG 645



 Score = 50.1 bits (118), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 33/133 (24%), Positives = 61/133 (45%), Gaps = 2/133 (1%)

Query: 376 MYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVT 435
           MY + G + +A N+F  +      +WN M+ GF+  G  N  L  +  ML +G  P+  T
Sbjct: 1   MYVRTGSLKDAKNLFYTLQLGCTSAWNWMIRGFTMMGQFNYALLFYLKMLGAGVSPDKYT 60

Query: 436 FLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRL 495
           F  ++ AC     V  G ++ +   ++  ++       S+I L    G + +A+     +
Sbjct: 61  FPYVVKACCGLKSVKMG-KIVHETVNLMGLKEDVFVGSSLIKLYAENGHLSDAQYLFDNI 119

Query: 496 PFEPDHRIWGALL 508
           P + D  +W  +L
Sbjct: 120 P-QKDSVLWNVML 131


>gi|224077710|ref|XP_002305373.1| predicted protein [Populus trichocarpa]
 gi|222848337|gb|EEE85884.1| predicted protein [Populus trichocarpa]
          Length = 676

 Score =  299 bits (766), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 197/637 (30%), Positives = 314/637 (49%), Gaps = 76/637 (11%)

Query: 8   KSLVVHLTSS-----------ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNG 56
           K L  HL +S           +  Y+  G++  A+ LF  + QR  + YN M+  ++  G
Sbjct: 41  KQLHAHLITSGLLSIDIRSVLVATYAHCGYVHNARKLFDELRQRGTLLYNFMIKMYIAKG 100

Query: 57  RLSEARRLFEEM-------PERNVVSWTAMICG---LADAGRVCEARKLFEEMPERNVVS 106
              EA ++F EM       P+     +    C    L + GRV     L  +      V 
Sbjct: 101 DYFEAMKVFLEMLGSKDCCPDNYTYPFVIKACSELLLVEYGRVLHGLTLVSKFGSHLFV- 159

Query: 107 WNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNV 166
            NS++   +  GE+ EARKVF++M  K+V+SWN MI GY +      A+V+F +M +  V
Sbjct: 160 LNSLLAMYMNCGEVEEARKVFDAMKEKSVVSWNTMINGYFKNGFANTALVVFNQMVDSGV 219

Query: 167 --------------------------------------VTWTSMISGYCRAGEVEEGYCL 188
                                                 +   +++  Y + G ++E   +
Sbjct: 220 EIDGASVVSVLPACGYLKELEVGRRVHGLVEEKVLGKKIVSNALVDMYAKCGSMDEARLV 279

Query: 189 FRRMPRKNVVSWTAMIGGFAWNGFHKESLLLF--IEMKGICDNGNNCNV-----QSCNSM 241
           F  M  ++VVSWT+MI G+  NG  K +L LF  ++++G+  N     +      S N++
Sbjct: 280 FDNMVERDVVSWTSMINGYILNGDAKSALSLFKIMQIEGLRPNSVTIALILLACASLNNL 339

Query: 242 INGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWT 301
            +G    G + + Q L+  V V      TS+ID Y     +  ++ +F     +  V W 
Sbjct: 340 KDGRCLHGWVMK-QRLYSEVAVE-----TSLIDMYAKCNCLGLSFSVFTRTSRKKTVPWN 393

Query: 302 AMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKT 361
           A++SG V N+L  EA  LF +M   GV    AT + L  A G  A++     I+  LM++
Sbjct: 394 ALLSGCVHNKLATEAIGLFKKMLMEGVEINAATCNSLLPAYGILADLQPVNNINSYLMRS 453

Query: 362 ESESDLILENCLISMYAKCGVIDNAYNIFSNMVS--RDLVSWNSMVMGFSHHGLANETLK 419
              S++ +   LI +Y+KCG +++A+ IF+ +    +D+  W+ ++ G+  HG     + 
Sbjct: 454 GFVSNIQVATSLIDIYSKCGSLESAHKIFNTIPVDVQDIFVWSIIIAGYGMHGHGETAVS 513

Query: 420 VFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLL 479
           +F+ M++SG  PN VTF  +L +CSHAG+V  G  LF  M   ++  P  +HY  M++LL
Sbjct: 514 LFKQMVQSGVKPNDVTFTSVLQSCSHAGMVDDGLYLFKFMLKDHQTIPNDDHYTCMVDLL 573

Query: 480 GRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAH 539
           GRAG++ EA + +  +PF P H +WGALLGAC   E N E+ E AA+ L EL+P N   +
Sbjct: 574 GRAGRMDEAYDLIKTMPFMPGHAVWGALLGACVMHE-NVELGEVAARWLFELEPGNTGNY 632

Query: 540 VVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWL 576
           V+L  +YAA GR  +   +R  M   G+RK P  S +
Sbjct: 633 VLLAKLYAALGRWEDAENVRQRMDDIGLRKAPAHSLI 669



 Score =  148 bits (374), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 126/544 (23%), Positives = 241/544 (44%), Gaps = 87/544 (15%)

Query: 36  LMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSW---TAMICGLADAGRVCEA 92
           L+       Y ++L  +     L+  ++L   +    ++S    + ++   A  G V  A
Sbjct: 15  LLLAPKTTQYQSLLKHYGAAQSLTSTKQLHAHLITSGLLSIDIRSVLVATYAHCGYVHNA 74

Query: 93  RKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSM-------------PI------- 132
           RKLF+E+ +R  + +N M+   I  G+  EA KVF  M             P        
Sbjct: 75  RKLFDELRQRGTLLYNFMIKMYIAKGDYFEAMKVFLEMLGSKDCCPDNYTYPFVIKACSE 134

Query: 133 --------------------KNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSM 172
                                ++   N+++A Y+ C  + EA  +F+ M+E++VV+W +M
Sbjct: 135 LLLVEYGRVLHGLTLVSKFGSHLFVLNSLLAMYMNCGEVEEARKVFDAMKEKSVVSWNTM 194

Query: 173 ISGYCRAGEVEEGYCLFRRMPRKNV-VSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGN 231
           I+GY + G       +F +M    V +   +++      G+ KE L +   + G+ +   
Sbjct: 195 INGYFKNGFANTALVVFNQMVDSGVEIDGASVVSVLPACGYLKE-LEVGRRVHGLVEEKV 253

Query: 232 NCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHN 291
                  N++++ Y + G ++EA+ +FD +  RD +SWTSMI+GY+  G   +A  LF  
Sbjct: 254 LGKKIVSNALVDMYAKCGSMDEARLVFDNMVERDVVSWTSMINGYILNGDAKSALSLFK- 312

Query: 292 MPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLG 351
                                          M+  G+ P + T +++  A  +  N+  G
Sbjct: 313 ------------------------------IMQIEGLRPNSVTIALILLACASLNNLKDG 342

Query: 352 RQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHH 411
           R +H  +MK    S++ +E  LI MYAKC  +  ++++F+    +  V WN+++ G  H+
Sbjct: 343 RCLHGWVMKQRLYSEVAVETSLIDMYAKCNCLGLSFSVFTRTSRKKTVPWNALLSGCVHN 402

Query: 412 GLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPG--- 468
            LA E + +F+ ML  G   N+ T   +L A    G+++    + N   + Y ++ G   
Sbjct: 403 KLATEAIGLFKKMLMEGVEINAATCNSLLPA---YGILADLQPVNN--INSYLMRSGFVS 457

Query: 469 -PEHYVSMINLLGRAGKIKEAEEFVLRLPFE-PDHRIWGALLGACGFCEGNAEIAEHAAK 526
             +   S+I++  + G ++ A +    +P +  D  +W  ++   G   G+ E A    K
Sbjct: 458 NIQVATSLIDIYSKCGSLESAHKIFNTIPVDVQDIFVWSIIIAGYGM-HGHGETAVSLFK 516

Query: 527 RLLE 530
           ++++
Sbjct: 517 QMVQ 520


>gi|147801369|emb|CAN74731.1| hypothetical protein VITISV_037837 [Vitis vinifera]
          Length = 719

 Score =  299 bits (766), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 187/557 (33%), Positives = 306/557 (54%), Gaps = 18/557 (3%)

Query: 56  GRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLI 115
           GRL+ AR+ F+++ + NV S+ A+I   A   R   A +LF+++PE ++VS+N+++    
Sbjct: 57  GRLAWARKAFQDISDPNVFSFNAIIAAYAKESRPLIAHQLFDQIPEPDLVSYNTLISAYA 116

Query: 116 RNGELNEARKVFNSMPIKNV-ISWNAMIAGYVECC----MMGE-AIVLFEEMEERNVVTW 169
             GE   A  +F+ M    + +    + A    CC    ++G+   V      +  V   
Sbjct: 117 DCGETAPALGLFSGMREMGLDMDXFTLSAVITACCDDVGLIGQLHSVAVSSGFDSYVSVN 176

Query: 170 TSMISGYCRAGEVEEGYCLFRRMPR-KNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICD 228
            ++++ Y + G++++   +F  M   ++ VSW +MI  +  +    ++L LF EM     
Sbjct: 177 NALLTYYGKNGDLDDAKRVFYGMGGIRDEVSWNSMIVAYGQHQEGSKALGLFQEM---VR 233

Query: 229 NGNNCNVQSCNSMINGYIRF----GRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQ-VS 283
            G N ++ +  S++  +       G L+    L  T   ++    + +ID Y   G  +S
Sbjct: 234 RGLNVDMFTLASVLTAFTCLEDLSGGLQFHGQLIKTGFHQNSHVGSGLIDLYSKCGGGMS 293

Query: 284 NAYYLFHNMPDRDAVAWTAMISGLVQNELFVE-ATYLFMEMRAHGVPPLNATFSVLFGAA 342
           +   +F  + + D V W  M+SG  QNE F+E A   F +M+  G  P + +F  +  A 
Sbjct: 294 DCRKVFEEITEPDLVLWNTMVSGYSQNEEFLEDALECFRQMQGIGYRPNDCSFVCVISAC 353

Query: 343 GATANIDLGRQIHCVLMKTESESDLI-LENCLISMYAKCGVIDNAYNIFSNMVSRDLVSW 401
              ++   G+QIH + +K++  S+ I ++N LI+MY+KCG + +A  +F  M   + VS 
Sbjct: 354 SNLSSPSQGKQIHSLALKSDIPSNRISVDNALIAMYSKCGNLQDARRLFDRMAEHNTVSL 413

Query: 402 NSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFD 461
           NSM+ G++ HG+  E+L +F+ MLE    P S+TF+ +LSAC+H G V  GW  FN M +
Sbjct: 414 NSMIAGYAQHGIEMESLHLFQWMLERQIAPTSITFISVLSACAHTGRVEEGWNYFNMMKE 473

Query: 462 VYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIA 521
            + I+P  EHY  MI+LLGRAGK+ EAE  + R+PF P    W +LLGAC    GN E+A
Sbjct: 474 KFNIEPEAEHYSCMIDLLGRAGKLSEAENLIARMPFNPGSIGWASLLGACR-THGNIELA 532

Query: 522 EHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGG 581
             AA ++L+L+P NA  +VVL N+YA++GR  E   +R  M  +GV+K PGCSW+     
Sbjct: 533 VKAANQVLQLEPSNAAPYVVLSNMYASAGRWEEVATVRKFMRDRGVKKKPGCSWIEVKKR 592

Query: 582 IQMFLSGDKIPAQVAEI 598
           I +F++ D     + EI
Sbjct: 593 IHVFVAEDSSHPMIKEI 609



 Score =  119 bits (297), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 114/494 (23%), Positives = 213/494 (43%), Gaps = 87/494 (17%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWT 77
           I  YSK G +  A+  FQ +   NV S+NA+++ + +  R   A +LF+++PE ++VS+ 
Sbjct: 50  ILLYSKCGRLAWARKAFQDISDPNVFSFNAIIAAYAKESRPLIAHQLFDQIPEPDLVSYN 109

Query: 78  AMICGLADAGRVCEARKLFEEMPERN----------VVSWNSMVVGLI------------ 115
            +I   AD G    A  LF  M E            V++     VGLI            
Sbjct: 110 TLISAYADCGETAPALGLFSGMREMGLDMDXFTLSAVITACCDDVGLIGQLHSVAVSSGF 169

Query: 116 ---------------RNGELNEARKVFNSM-PIKNVISWNAMIAGYVECCMMGEAIVLFE 159
                          +NG+L++A++VF  M  I++ +SWN+MI  Y +     +A+ LF+
Sbjct: 170 DSYVSVNNALLTYYGKNGDLDDAKRVFYGMGGIRDEVSWNSMIVAYGQHQEGSKALGLFQ 229

Query: 160 EMEER----NVVTWTSMI---------------------SGYCRAGEVEEGYC------- 187
           EM  R    ++ T  S++                     +G+ +   V  G         
Sbjct: 230 EMVRRGLNVDMFTLASVLTAFTCLEDLSGGLQFHGQLIKTGFHQNSHVGSGLIDLYSKCG 289

Query: 188 --------LFRRMPRKNVVSWTAMIGGFAWN-GFHKESLLLFIEMKGICDNGNNCN---- 234
                   +F  +   ++V W  M+ G++ N  F +++L  F +M+GI    N+C+    
Sbjct: 290 GGMSDCRKVFEEITEPDLVLWNTMVSGYSQNEEFLEDALECFRQMQGIGYRPNDCSFVCV 349

Query: 235 VQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPD 294
           + +C+++ +     G+   +  L   +P        ++I  Y   G + +A  LF  M +
Sbjct: 350 ISACSNLSSP--SQGKQIHSLALKSDIPSNRISVDNALIAMYSKCGNLQDARRLFDRMAE 407

Query: 295 RDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLG-RQ 353
            + V+  +MI+G  Q+ + +E+ +LF  M    + P + TF  +  A   T  ++ G   
Sbjct: 408 HNTVSLNSMIAGYAQHGIEMESLHLFQWMLERQIAPTSITFISVLSACAHTGRVEEGWNY 467

Query: 354 IHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNM-VSRDLVSWNSMVMGFSHHG 412
            + +  K   E +    +C+I +  + G +  A N+ + M  +   + W S++     HG
Sbjct: 468 FNMMKEKFNIEPEAEHYSCMIDLLGRAGKLSEAENLIARMPFNPGSIGWASLLGACRTHG 527

Query: 413 LANETLKVFESMLE 426
                +K    +L+
Sbjct: 528 NIELAVKAANQVLQ 541



 Score =  108 bits (271), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 103/409 (25%), Positives = 173/409 (42%), Gaps = 71/409 (17%)

Query: 108 NSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVV 167
           N  ++   + G L  ARK F  +   NV S+NA+IA Y +      A  LF+++ E ++V
Sbjct: 47  NHFILLYSKCGRLAWARKAFQDISDPNVFSFNAIIAAYAKESRPLIAHQLFDQIPEPDLV 106

Query: 168 TWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGIC 227
           ++ ++IS Y   GE      LF  M                  G   +   L   +   C
Sbjct: 107 SYNTLISAYADCGETAPALGLFSGMREM---------------GLDMDXFTLSAVITACC 151

Query: 228 DN--------------GNNCNVQSCNSMINGYIRFGRLEEAQNLFDTV-PVRDEISWTSM 272
           D+              G +  V   N+++  Y + G L++A+ +F  +  +RDE+SW SM
Sbjct: 152 DDVGLIGQLHSVAVSSGFDSYVSVNNALLTYYGKNGDLDDAKRVFYGMGGIRDEVSWNSM 211

Query: 273 IDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLN 332
           I  Y    + S A  LF  M  R            +  ++F  A+ L             
Sbjct: 212 IVAYGQHQEGSKALGLFQEMVRRG-----------LNVDMFTLASVL------------- 247

Query: 333 ATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKC-GVIDNAYNIFS 391
             F+ L   +G       G Q H  L+KT    +  + + LI +Y+KC G + +   +F 
Sbjct: 248 TAFTCLEDLSG-------GLQFHGQLIKTGFHQNSHVGSGLIDLYSKCGGGMSDCRKVFE 300

Query: 392 NMVSRDLVSWNSMVMGFSHH-GLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVS 450
            +   DLV WN+MV G+S +     + L+ F  M   G  PN  +F+ ++SACS+    S
Sbjct: 301 EITEPDLVLWNTMVSGYSQNEEFLEDALECFRQMQGIGYRPNDCSFVCVISACSNLSSPS 360

Query: 451 RGWELFNAMFDVYKIQPGPEHYVSMINLL----GRAGKIKEAEEFVLRL 495
           +G ++ +           P + +S+ N L     + G +++A     R+
Sbjct: 361 QGKQIHSLALK----SDIPSNRISVDNALIAMYSKCGNLQDARRLFDRM 405



 Score = 69.7 bits (169), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 53/182 (29%), Positives = 89/182 (48%), Gaps = 17/182 (9%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNV---- 73
           I  YSK G + +A+ LF  M + N VS N+M++G+ Q+G   E+  LF+ M ER +    
Sbjct: 386 IAMYSKCGNLQDARRLFDRMAEHNTVSLNSMIAGYAQHGIEMESLHLFQWMLERQIAPTS 445

Query: 74  VSWTAMICGLADAGRVCEARKLFEEMPERNVVS-----WNSMVVGLIRNGELNEARKVFN 128
           +++ +++   A  GRV E    F  M E+  +      ++ M+  L R G+L+EA  +  
Sbjct: 446 ITFISVLSACAHTGRVEEGWNYFNMMKEKFNIEPEAEHYSCMIDLLGRAGKLSEAENLIA 505

Query: 129 SMPIK-NVISWNAMIA-----GYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEV 182
            MP     I W +++      G +E  +     VL  ++E  N   +  + + Y  AG  
Sbjct: 506 RMPFNPGSIGWASLLGACRTHGNIELAVKAANQVL--QLEPSNAAPYVVLSNMYASAGRW 563

Query: 183 EE 184
           EE
Sbjct: 564 EE 565



 Score = 44.7 bits (104), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 44/214 (20%), Positives = 81/214 (37%), Gaps = 44/214 (20%)

Query: 335 FSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCG-----------VI 383
           F  L     A  ++  G+ +H + +K+         N  I +Y+KCG           + 
Sbjct: 11  FRHLLKTCIAERDLSTGKSLHSLYIKSFIPPSTYFSNHFILLYSKCGRLAWARKAFQDIS 70

Query: 384 DN--------------------AYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFES 423
           D                     A+ +F  +   DLVS+N+++  ++  G     L +F  
Sbjct: 71  DPNVFSFNAIIAAYAKESRPLIAHQLFDQIPEPDLVSYNTLISAYADCGETAPALGLFSG 130

Query: 424 MLESGTHPNSVTFLGILSA-CSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLL--- 479
           M E G   +  T   +++A C   GL+ +             +  G + YVS+ N L   
Sbjct: 131 MREMGLDMDXFTLSAVITACCDDVGLIGQ--------LHSVAVSSGFDSYVSVNNALLTY 182

Query: 480 -GRAGKIKEAEEFVLRLPFEPDHRIWGALLGACG 512
            G+ G + +A+     +    D   W +++ A G
Sbjct: 183 YGKNGDLDDAKRVFYGMGGIRDEVSWNSMIVAYG 216


>gi|225441321|ref|XP_002274344.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Vitis vinifera]
          Length = 739

 Score =  299 bits (766), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 196/571 (34%), Positives = 301/571 (52%), Gaps = 45/571 (7%)

Query: 40  RNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEM 99
           ++V   N ML  +++ G +  A +LF+EM  R++VSWT++I G           KLF +M
Sbjct: 183 QDVYFGNTMLEVYVKCGSIGNASKLFDEMTHRDLVSWTSIISGYIYGESFSRGFKLFNKM 242

Query: 100 P---ERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVIS----WNAMIAGYVECCMMG 152
               E N V+   M+        +NE R++ + +  K  +      N+++  Y +    G
Sbjct: 243 RMEMEPNSVTMVVMLQACSAFESVNEGRELHSYVIKKGFMVDRSVQNSILRMYTKTGGSG 302

Query: 153 EAI-VLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNG 211
           E +   F E+EER++++W  +I+ Y   G++ E    F  M R+   S            
Sbjct: 303 EEVETFFSEIEERDIISWNILIAFYSFRGDIAEVAERFNEMRREVTSS------------ 350

Query: 212 FHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTS 271
              ESL L +     C N +   +  C+++  G            L DTV +      T 
Sbjct: 351 --IESLTLVVSAIANCANLSEGGMLHCSAIKTG------------LHDTVLM------TC 390

Query: 272 MIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPL 331
           ++  Y   G +  +  LF ++P R+++ W++M+SG  QN  F EA  L+ +M A G+ P 
Sbjct: 391 LLALYAKCGALEISAQLFRDIPHRNSITWSSMMSGFTQNGFFKEAIELYQQMLASGLQPN 450

Query: 332 NATFSVLFGAAGATANIDLGRQIHCVLMKTES----ESDLILENCLISMYAKCGVIDNAY 387
           +   S L  A      + LG+  H   ++  S    E    LE  L++MY +CG I +A 
Sbjct: 451 HDIISTLVIAYTHLGALQLGKATHAFFIRNLSSWPEEDSAPLETSLLNMYIRCGSISSAL 510

Query: 388 NIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAG 447
             F+ +V +D+V+W SM+ GF  HGLA E LK F+SMLES   PNSVTFL +LSACSH+G
Sbjct: 511 ICFNRVVVKDVVTWTSMIEGFGTHGLAFEALKFFKSMLESEVQPNSVTFLSLLSACSHSG 570

Query: 448 LVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGAL 507
           LV  G E+F++M   ++I+P   HY  M++LLGR+GK+KEA   +L+L   PD RIWGAL
Sbjct: 571 LVREGCEVFHSMKWGFRIEPDLNHYTCMVDLLGRSGKLKEALTVILKLVTCPDSRIWGAL 630

Query: 508 LGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGV 567
           L A    E + ++ E+AA++LLEL+P N   + +  NI A+  R  E  ++R  M  + +
Sbjct: 631 LAASRVHE-DKKLGEYAAEKLLELEPDNVGYYTLWSNIEASLERWGEVEEVRRVMHERDL 689

Query: 568 RKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
           +K PG S +   G I  F+SGD    QV EI
Sbjct: 690 KKKPGWSCIEVKGMIHGFVSGDTSHHQVEEI 720



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 106/432 (24%), Positives = 189/432 (43%), Gaps = 63/432 (14%)

Query: 21  YSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMP---ERNVVSWT 77
           Y K G I  A  LF  M  R++VS+ +++SG++     S   +LF +M    E N V+  
Sbjct: 195 YVKCGSIGNASKLFDEMTHRDLVSWTSIISGYIYGESFSRGFKLFNKMRMEMEPNSVTMV 254

Query: 78  AMICGLADAGRVCEARKL------------------------------------FEEMPE 101
            M+   +    V E R+L                                    F E+ E
Sbjct: 255 VMLQACSAFESVNEGRELHSYVIKKGFMVDRSVQNSILRMYTKTGGSGEEVETFFSEIEE 314

Query: 102 RNVVSWNSMVVGLIRNGELNEARKVFNSMP---IKNVISWNAMIAGYVECCMMGEAIVLF 158
           R+++SWN ++      G++ E  + FN M      ++ S   +++    C  + E  +L 
Sbjct: 315 RDIISWNILIAFYSFRGDIAEVAERFNEMRREVTSSIESLTLVVSAIANCANLSEGGMLH 374

Query: 159 EEMEE---RNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKE 215
               +    + V  T +++ Y + G +E    LFR +P +N ++W++M+ GF  NGF KE
Sbjct: 375 CSAIKTGLHDTVLMTCLLALYAKCGALEISAQLFRDIPHRNSITWSSMMSGFTQNGFFKE 434

Query: 216 SLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLE--EAQNLFDTVPVRDEISW---- 269
           ++ L+ +M     +G   N    ++++  Y   G L+  +A + F    +R+  SW    
Sbjct: 435 AIELYQQMLA---SGLQPNHDIISTLVIAYTHLGALQLGKATHAF---FIRNLSSWPEED 488

Query: 270 -----TSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMR 324
                TS+++ Y+  G +S+A   F+ +  +D V WT+MI G   + L  EA   F  M 
Sbjct: 489 SAPLETSLLNMYIRCGSISSALICFNRVVVKDVVTWTSMIEGFGTHGLAFEALKFFKSML 548

Query: 325 AHGVPPLNATFSVLFGAAGATANIDLGRQI-HCVLMKTESESDLILENCLISMYAKCGVI 383
              V P + TF  L  A   +  +  G ++ H +      E DL    C++ +  + G +
Sbjct: 549 ESEVQPNSVTFLSLLSACSHSGLVREGCEVFHSMKWGFRIEPDLNHYTCMVDLLGRSGKL 608

Query: 384 DNAYNIFSNMVS 395
             A  +   +V+
Sbjct: 609 KEALTVILKLVT 620



 Score =  125 bits (313), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 122/466 (26%), Positives = 206/466 (44%), Gaps = 66/466 (14%)

Query: 46  NAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVV 105
           + +++ + Q      A  +     E N V W ++I    D+G    A   +  M E  V 
Sbjct: 87  SKLITLYSQLNDFRSAFSICNSFEEPNTVIWNSIIKSHVDSGLFGYALLQYGRMRELGVA 146

Query: 106 SWNSMVVGLIRN-----GELNEARKVFNSMPIK-----NVISWNAMIAGYVECCMMGEAI 155
             +S    +I       G   E  +  + + +K     +V   N M+  YV+C  +G A 
Sbjct: 147 H-DSFTFPIINQAIWSLGCRVEYGETVHCVAMKMGFGQDVYFGNTMLEVYVKCGSIGNAS 205

Query: 156 VLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRK---NVVSWTAMIGGFAWNGF 212
            LF+EM  R++V+WTS+ISGY        G+ LF +M  +   N V+   M+   A + F
Sbjct: 206 KLFDEMTHRDLVSWTSIISGYIYGESFSRGFKLFNKMRMEMEPNSVTMVVMLQ--ACSAF 263

Query: 213 HK----ESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRF-GRLEEAQNLFDTVPVRDEI 267
                   L  ++  KG   +    +VQ  NS++  Y +  G  EE +  F  +  RD I
Sbjct: 264 ESVNEGRELHSYVIKKGFMVDR---SVQ--NSILRMYTKTGGSGEEVETFFSEIEERDII 318

Query: 268 SWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHG 327
           SW  +I           A+Y F     R  +A               E    F EMR   
Sbjct: 319 SWNILI-----------AFYSF-----RGDIA---------------EVAERFNEMRREV 347

Query: 328 VPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAY 387
              +  + +++  A    AN+  G  +HC  +KT    D +L  CL+++YAKCG ++ + 
Sbjct: 348 TSSIE-SLTLVVSAIANCANLSEGGMLHCSAIKT-GLHDTVLMTCLLALYAKCGALEISA 405

Query: 388 NIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAG 447
            +F ++  R+ ++W+SM+ GF+ +G   E +++++ ML SG  PN      ++ A +H G
Sbjct: 406 QLFRDIPHRNSITWSSMMSGFTQNGFFKEAIELYQQMLASGLQPNHDIISTLVIAYTHLG 465

Query: 448 LVSRGWELFNAMFDVYKIQPGPEH-----YVSMINLLGRAGKIKEA 488
            +  G +  +A F +  +   PE        S++N+  R G I  A
Sbjct: 466 ALQLG-KATHAFF-IRNLSSWPEEDSAPLETSLLNMYIRCGSISSA 509



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 77/259 (29%), Positives = 120/259 (46%), Gaps = 13/259 (5%)

Query: 270 TSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVP 329
           + +I  Y  +    +A+ + ++  + + V W ++I   V + LF  A   +  MR  GV 
Sbjct: 87  SKLITLYSQLNDFRSAFSICNSFEEPNTVIWNSIIKSHVDSGLFGYALLQYGRMRELGVA 146

Query: 330 PLNATFSVLFGAAGATA-NIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYN 388
             + TF ++  A  +    ++ G  +HCV MK     D+   N ++ +Y KCG I NA  
Sbjct: 147 HDSFTFPIINQAIWSLGCRVEYGETVHCVAMKMGFGQDVYFGNTMLEVYVKCGSIGNASK 206

Query: 389 IFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGL 448
           +F  M  RDLVSW S++ G+ +    +   K+F  M      PNSVT + +L ACS    
Sbjct: 207 LFDEMTHRDLVSWTSIISGYIYGESFSRGFKLFNKM-RMEMEPNSVTMVVMLQACSAFES 265

Query: 449 VSRGWELFNAMFDVYKIQPGPEHYVSMINLLGR-----AGKIKEAEEFVLRLPFEPDHRI 503
           V+ G EL +     Y I+ G     S+ N + R      G  +E E F   +  E D   
Sbjct: 266 VNEGRELHS-----YVIKKGFMVDRSVQNSILRMYTKTGGSGEEVETFFSEIE-ERDIIS 319

Query: 504 WGALLGACGFCEGNAEIAE 522
           W  L+    F    AE+AE
Sbjct: 320 WNILIAFYSFRGDIAEVAE 338



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 65/237 (27%), Positives = 119/237 (50%), Gaps = 27/237 (11%)

Query: 11  VVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEM-- 68
            V +T  +  Y+K G ++ +  LF+ +P RN +++++M+SGF QNG   EA  L+++M  
Sbjct: 385 TVLMTCLLALYAKCGALEISAQLFRDIPHRNSITWSSMMSGFTQNGFFKEAIELYQQMLA 444

Query: 69  ----PERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSW---------NSMVVGLI 115
               P  +++S   +      A ++ +A   F     RN+ SW          S++   I
Sbjct: 445 SGLQPNHDIISTLVIAYTHLGALQLGKATHAF---FIRNLSSWPEEDSAPLETSLLNMYI 501

Query: 116 RNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEER----NVVTWTS 171
           R G ++ A   FN + +K+V++W +MI G+    +  EA+  F+ M E     N VT+ S
Sbjct: 502 RCGSISSALICFNRVVVKDVVTWTSMIEGFGTHGLAFEALKFFKSMLESEVQPNSVTFLS 561

Query: 172 MISGYCRAGEVEEGYCLFRRMP-----RKNVVSWTAMIGGFAWNGFHKESLLLFIEM 223
           ++S    +G V EG  +F  M        ++  +T M+     +G  KE+L + +++
Sbjct: 562 LLSACSHSGLVREGCEVFHSMKWGFRIEPDLNHYTCMVDLLGRSGKLKEALTVILKL 618


>gi|62320406|dbj|BAD94843.1| putative protein [Arabidopsis thaliana]
          Length = 720

 Score =  299 bits (766), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 168/533 (31%), Positives = 288/533 (54%), Gaps = 18/533 (3%)

Query: 70  ERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNS 129
           ERN V   +++       RV  ARK+F+EM ER+V+SWNS++ G + NG   +   VF  
Sbjct: 77  ERNSVG-NSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQ 135

Query: 130 MPIKNV-ISWNAMIAGYVECC-----MMGEAI--VLFEEMEERNVVTWTSMISGYCRAGE 181
           M +  + I    +++ +  C       +G A+  +  +    R      +++  Y + G+
Sbjct: 136 MLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSREDRFCNTLLDMYSKCGD 195

Query: 182 VEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSM 241
           ++    +FR M  ++VVS+T+MI G+A  G   E++ LF EM+   + G + +V +  ++
Sbjct: 196 LDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEME---EEGISPDVYTVTAV 252

Query: 242 INGYIRFGRLEEAQNLFDTVPVRDE----ISWTSMIDGYLSVGQVSNAYYLFHNMPDRDA 297
           +N   R+  L+E + + + +   D         +++D Y   G +  A  +F  M  +D 
Sbjct: 253 LNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAELVFSEMRVKDI 312

Query: 298 VAWTAMISGLVQNELFVEATYLF-MEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHC 356
           ++W  +I G  +N    EA  LF + +      P   T + +  A  + +  D GR+IH 
Sbjct: 313 ISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPACASLSAFDKGREIHG 372

Query: 357 VLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANE 416
            +M+    SD  + N L+ MYAKCG +  A+ +F ++ S+DLVSW  M+ G+  HG   E
Sbjct: 373 YIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDDIASKDLVSWTVMIAGYGMHGFGKE 432

Query: 417 TLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMI 476
            + +F  M ++G   + ++F+ +L ACSH+GLV  GW  FN M    KI+P  EHY  ++
Sbjct: 433 AIALFNQMRQAGIEADEISFVSLLYACSHSGLVDEGWRFFNIMRHECKIEPTVEHYACIV 492

Query: 477 NLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNA 536
           ++L R G + +A  F+  +P  PD  IWGALL  C     + ++AE  A+++ EL+P N 
Sbjct: 493 DMLARTGDLIKAYRFIENMPIPPDATIWGALLCGCRI-HHDVKLAEKVAEKVFELEPENT 551

Query: 537 PAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGD 589
             +V++ NIYA + +  +  +LR  +G +G+RK PGCSW+   G + +F++GD
Sbjct: 552 GYYVLMANIYAEAEKWEQVKRLRKRIGQRGLRKNPGCSWIEIKGRVNIFVAGD 604



 Score =  142 bits (359), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 121/475 (25%), Positives = 214/475 (45%), Gaps = 77/475 (16%)

Query: 16  SSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEM----PER 71
           S +  Y K   +D A+ +F  M +R+V+S+N++++G++ NG   +   +F +M     E 
Sbjct: 84  SLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLVSGIEI 143

Query: 72  NVVSWTAMICGLADAGRVCEARKL----FEEMPERNVVSWNSMVVGLIRNGELNEARKVF 127
           ++ +  ++  G AD+  +   R +     +    R     N+++    + G+L+ A+ VF
Sbjct: 144 DLATIVSVFAGCADSRLISLGRAVHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVF 203

Query: 128 NSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEE------------------------ 163
             M  ++V+S+ +MIAGY    + GEA+ LFEEMEE                        
Sbjct: 204 REMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLD 263

Query: 164 --RNVVTW-------------TSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFA 208
             + V  W              +++  Y + G ++E   +F  M  K+++SW  +IGG++
Sbjct: 264 EGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAELVFSEMRVKDIISWNTIIGGYS 323

Query: 209 WNGFHKESLLLF---IEMKGICDNGNN--CNVQSCNSM--------INGYI-RFGRLEEA 254
            N +  E+L LF   +E K    +     C + +C S+        I+GYI R G     
Sbjct: 324 KNCYANEALSLFNLLLEEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMRNGYFS-- 381

Query: 255 QNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFV 314
                     D     S++D Y   G +  A+ LF ++  +D V+WT MI+G   +    
Sbjct: 382 ----------DRHVANSLVDMYAKCGALLLAHMLFDDIASKDLVSWTVMIAGYGMHGFGK 431

Query: 315 EATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILEN--C 372
           EA  LF +MR  G+     +F  L  A   +  +D G +   + M+ E + +  +E+  C
Sbjct: 432 EAIALFNQMRQAGIEADEISFVSLLYACSHSGLVDEGWRFFNI-MRHECKIEPTVEHYAC 490

Query: 373 LISMYAKCGVIDNAYNIFSNM-VSRDLVSWNSMVMGFSHHGLANETLKVFESMLE 426
           ++ M A+ G +  AY    NM +  D   W +++ G   H       KV E + E
Sbjct: 491 IVDMLARTGDLIKAYRFIENMPIPPDATIWGALLCGCRIHHDVKLAEKVAEKVFE 545



 Score =  139 bits (349), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 99/380 (26%), Positives = 181/380 (47%), Gaps = 30/380 (7%)

Query: 96  FEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMM---- 151
           F+E+     + WN ++  L ++G+ + +  +F     K ++S    +  Y   C+     
Sbjct: 1   FDEVKIEKALFWNILMNELAKSGDFSGSIGLF-----KKMMSSGVEMDSYTFSCVSKSFS 55

Query: 152 -------GEAI---VLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWT 201
                  GE +   +L     ERN V   S+++ Y +   V+    +F  M  ++V+SW 
Sbjct: 56  SLRSVHGGEQLHGFILKSGFGERNSVG-NSLVAFYLKNQRVDSARKVFDEMTERDVISWN 114

Query: 202 AMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMING-----YIRFGRLEEAQN 256
           ++I G+  NG  ++ L +F++M     +G   ++ +  S+  G      I  GR   +  
Sbjct: 115 SIINGYVSNGLAEKGLSVFVQM---LVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIG 171

Query: 257 LFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEA 316
           +       D     +++D Y   G + +A  +F  M DR  V++T+MI+G  +  L  EA
Sbjct: 172 VKACFSREDRFC-NTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEA 230

Query: 317 TYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISM 376
             LF EM   G+ P   T + +         +D G+++H  + + +   D+ + N L+ M
Sbjct: 231 VKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDM 290

Query: 377 YAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGT-HPNSVT 435
           YAKCG +  A  +FS M  +D++SWN+++ G+S +  ANE L +F  +LE     P+  T
Sbjct: 291 YAKCGSMQEAELVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERT 350

Query: 436 FLGILSACSHAGLVSRGWEL 455
              +L AC+      +G E+
Sbjct: 351 VACVLPACASLSAFDKGREI 370



 Score =  115 bits (288), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 91/344 (26%), Positives = 159/344 (46%), Gaps = 55/344 (15%)

Query: 158 FEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVV--SWTAMIGGFAWNGFHK- 214
           F+E++    + W  +++   ++G+      LF++M    V   S+T      +++     
Sbjct: 1   FDEVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSV 60

Query: 215 ---ESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTS 271
              E L  FI   G    G   +V   NS++  Y++  R++ A+ +FD +  RD ISW S
Sbjct: 61  HGGEQLHGFILKSGF---GERNSVG--NSLVAFYLKNQRVDSARKVFDEMTERDVISWNS 115

Query: 272 MIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPL 331
           +I+GY+S                          +GL +  L V     F++M   G+   
Sbjct: 116 IINGYVS--------------------------NGLAEKGLSV-----FVQMLVSGIEID 144

Query: 332 NATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFS 391
            AT   +F     +  I LGR +H + +K     +    N L+ MY+KCG +D+A  +F 
Sbjct: 145 LATIVSVFAGCADSRLISLGRAVHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFR 204

Query: 392 NMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSR 451
            M  R +VS+ SM+ G++  GLA E +K+FE M E G  P+  T   +L+ C+   L+  
Sbjct: 205 EMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDE 264

Query: 452 G-----WELFNAM-FDVYKIQPGPEHYVSMINLLGRAGKIKEAE 489
           G     W   N + FD++          +++++  + G ++EAE
Sbjct: 265 GKRVHEWIKENDLGFDIFVSN-------ALMDMYAKCGSMQEAE 301



 Score = 40.8 bits (94), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 47/217 (21%), Positives = 90/217 (41%), Gaps = 23/217 (10%)

Query: 11  VVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYN-----------AMLSGFLQNGRLS 59
           ++   + I  YSK  + +EA +LF L+ +    S +           A LS F +   + 
Sbjct: 312 IISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPACASLSAFDKGREIH 371

Query: 60  EARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGE 119
                     +R+V +  +++   A  G +  A  LF+++  +++VSW  M+ G   +G 
Sbjct: 372 GYIMRNGYFSDRHVAN--SLVDMYAKCGALLLAHMLFDDIASKDLVSWTVMIAGYGMHGF 429

Query: 120 LNEARKVFNSMPIKNV----ISWNAMIAGYVECCMMGEAIVLFEEME-----ERNVVTWT 170
             EA  +FN M    +    IS+ +++       ++ E    F  M      E  V  + 
Sbjct: 430 GKEAIALFNQMRQAGIEADEISFVSLLYACSHSGLVDEGWRFFNIMRHECKIEPTVEHYA 489

Query: 171 SMISGYCRAGEVEEGYCLFRRMP-RKNVVSWTAMIGG 206
            ++    R G++ + Y     MP   +   W A++ G
Sbjct: 490 CIVDMLARTGDLIKAYRFIENMPIPPDATIWGALLCG 526


>gi|222622248|gb|EEE56380.1| hypothetical protein OsJ_05522 [Oryza sativa Japonica Group]
          Length = 518

 Score =  299 bits (766), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 160/490 (32%), Positives = 278/490 (56%), Gaps = 12/490 (2%)

Query: 119 ELNEARKVFNSMPIKNVISWNAMIAGYVE---CCMMGEAIVLFEEME-ERNVVTWTSMIS 174
           E++EA KVF S+P   ++SWN +I G+ +   C    E + L +E   E N VT++++++
Sbjct: 7   EMDEAVKVFESLPSVTIVSWNILITGFGQEGSCAKAVEVLSLMQEAGFEPNEVTYSNLLA 66

Query: 175 GYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCN 234
              +A +V     +F ++ R +V +W  ++ G+     H++++ LF  M+      +   
Sbjct: 67  SCIKARDVHSARAMFDKISRPSVTTWNTLLSGYCQEEQHQDTIELFRRMQHQNVQPDRTT 126

Query: 235 V----QSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFH 290
           +     SC+ +  G + FGR   + ++   +   D    + ++D Y   GQ+  A  +F+
Sbjct: 127 LAVILSSCSKL--GILDFGRQVHSASVRFLLH-NDMFVASGLVDMYSKCGQIGIARSIFN 183

Query: 291 NMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDL 350
            M +RD V W ++ISGL  + L  EA   F +MR +G+ P  ++++ +  +    ++I  
Sbjct: 184 KMTERDVVCWNSIISGLTIHSLNKEAFDFFKQMRENGIMPTESSYASMINSCSRLSSIPH 243

Query: 351 GRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSH 410
           GRQIH  +MK   + ++ + + LI MYAKCG +D+A   F  M+ +++V+WN M+ G++ 
Sbjct: 244 GRQIHAQVMKDGYDQNVYVGSALIDMYAKCGNMDDARLFFDTMMMKNIVAWNEMIHGYAQ 303

Query: 411 HGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPE 470
           +GL ++ +++FE ML +   P++VTF+ +L+ CSH+GLV +    FN+M + Y I P  E
Sbjct: 304 NGLGDKAVELFEYMLTTEQKPDAVTFIAVLTGCSHSGLVDKAMAFFNSMENSYGIIPLAE 363

Query: 471 HYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLE 530
           HY  +I+ LGRAG+  E E  + ++P + D  IW  LL AC     NAE+ + AA+ L  
Sbjct: 364 HYTCLIDALGRAGRFVEVEALIHKMPCKDDPIIWEVLLAAC-VVHHNAELGKCAAEHLFR 422

Query: 531 LDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDK 590
           +DP N   +V+L NIYA+ GRH +   +R  M  +GV K  G SW+ +  G++ F+  D 
Sbjct: 423 IDPKNPSPYVLLSNIYASLGRHGDASAVRALMSNRGVVKGRGYSWIDQKDGVRAFMVADD 482

Query: 591 IPAQVAEILL 600
           + A   E+ +
Sbjct: 483 LGADGGELTM 492



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 94/417 (22%), Positives = 186/417 (44%), Gaps = 59/417 (14%)

Query: 21  YSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPER----NVVSW 76
           Y+K   +DEA  +F+ +P   +VS+N +++GF Q G  ++A  +   M E     N V++
Sbjct: 2   YTKCVEMDEAVKVFESLPSVTIVSWNILITGFGQEGSCAKAVEVLSLMQEAGFEPNEVTY 61

Query: 77  TAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVI 136
           + ++     A  V  AR +F+++   +V +WN+++ G  +  +  +  ++F  M  +NV 
Sbjct: 62  SNLLASCIKARDVHSARAMFDKISRPSVTTWNTLLSGYCQEEQHQDTIELFRRMQHQNVQ 121

Query: 137 SWNAMIAGYVECC----------MMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGY 186
                +A  +  C           +  A V F  +   ++   + ++  Y + G++    
Sbjct: 122 PDRTTLAVILSSCSKLGILDFGRQVHSASVRF--LLHNDMFVASGLVDMYSKCGQIGIAR 179

Query: 187 CLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMK---------------------- 224
            +F +M  ++VV W ++I G   +  +KE+   F +M+                      
Sbjct: 180 SIFNKMTERDVVCWNSIISGLTIHSLNKEAFDFFKQMRENGIMPTESSYASMINSCSRLS 239

Query: 225 ----------GICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMID 274
                      +  +G + NV   +++I+ Y + G +++A+  FDT+ +++ ++W  MI 
Sbjct: 240 SIPHGRQIHAQVMKDGYDQNVYVGSALIDMYAKCGNMDDARLFFDTMMMKNIVAWNEMIH 299

Query: 275 GYLSVGQVSNAYYLFHNM----PDRDAVAWTAMISGLVQNELFVEATYLFMEMR-AHGVP 329
           GY   G    A  LF  M       DAV + A+++G   + L  +A   F  M  ++G+ 
Sbjct: 300 GYAQNGLGDKAVELFEYMLTTEQKPDAVTFIAVLTGCSHSGLVDKAMAFFNSMENSYGII 359

Query: 330 PLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNA 386
           PL   ++ L  A G         ++  ++ K   + D I+   L+   A C V  NA
Sbjct: 360 PLAEHYTCLIDALGRAGRF---VEVEALIHKMPCKDDPIIWEVLL---AACVVHHNA 410



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 50/187 (26%), Positives = 104/187 (55%), Gaps = 12/187 (6%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVV--- 74
           +  YSK G I  A+++F  M +R+VV +N+++SG   +    EA   F++M E  ++   
Sbjct: 166 VDMYSKCGQIGIARSIFNKMTERDVVCWNSIISGLTIHSLNKEAFDFFKQMRENGIMPTE 225

Query: 75  -SWTAMICGLADAGRVCEARKLFEEM----PERNVVSWNSMVVGLIRNGELNEARKVFNS 129
            S+ +MI   +    +   R++  ++     ++NV   ++++    + G +++AR  F++
Sbjct: 226 SSYASMINSCSRLSSIPHGRQIHAQVMKDGYDQNVYVGSALIDMYAKCGNMDDARLFFDT 285

Query: 130 MPIKNVISWNAMIAGYVECCMMGEAIVLFEEM----EERNVVTWTSMISGYCRAGEVEEG 185
           M +KN+++WN MI GY +  +  +A+ LFE M    ++ + VT+ ++++G   +G V++ 
Sbjct: 286 MMMKNIVAWNEMIHGYAQNGLGDKAVELFEYMLTTEQKPDAVTFIAVLTGCSHSGLVDKA 345

Query: 186 YCLFRRM 192
              F  M
Sbjct: 346 MAFFNSM 352



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 45/182 (24%), Positives = 85/182 (46%), Gaps = 14/182 (7%)

Query: 376 MYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVT 435
           MY KC  +D A  +F ++ S  +VSWN ++ GF   G   + ++V   M E+G  PN VT
Sbjct: 1   MYTKCVEMDEAVKVFESLPSVTIVSWNILITGFGQEGSCAKAVEVLSLMQEAGFEPNEVT 60

Query: 436 FLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRL 495
           +  +L++C    + +R      AMFD    +P    + ++++   +  + ++  E   R+
Sbjct: 61  YSNLLASC----IKARDVHSARAMFDKIS-RPSVTTWNTLLSGYCQEEQHQDTIELFRRM 115

Query: 496 P---FEPDHRIWGALLGAC---GFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAAS 549
                +PD      +L +C   G  +   ++   + + LL  D   A     L ++Y+  
Sbjct: 116 QHQNVQPDRTTLAVILSSCSKLGILDFGRQVHSASVRFLLHNDMFVASG---LVDMYSKC 172

Query: 550 GR 551
           G+
Sbjct: 173 GQ 174



 Score = 46.6 bits (109), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 48/195 (24%), Positives = 78/195 (40%), Gaps = 46/195 (23%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEM----PERNV 73
           I  Y+K G +D+A+  F  M  +N+V++N M+ G+ QNG   +A  LFE M     + + 
Sbjct: 267 IDMYAKCGNMDDARLFFDTMMMKNIVAWNEMIHGYAQNGLGDKAVELFEYMLTTEQKPDA 326

Query: 74  VSWTAMICG------------------------------------LADAGRVCEARKLFE 97
           V++ A++ G                                    L  AGR  E   L  
Sbjct: 327 VTFIAVLTGCSHSGLVDKAMAFFNSMENSYGIIPLAEHYTCLIDALGRAGRFVEVEALIH 386

Query: 98  EMP-ERNVVSWNSMVVGLI--RNGELNE--ARKVFNSMPIKNVISWNAMIAGYVECCMMG 152
           +MP + + + W  ++   +   N EL +  A  +F   P KN   +  +   Y      G
Sbjct: 387 KMPCKDDPIIWEVLLAACVVHHNAELGKCAAEHLFRIDP-KNPSPYVLLSNIYASLGRHG 445

Query: 153 EAIVLFEEMEERNVV 167
           +A  +   M  R VV
Sbjct: 446 DASAVRALMSNRGVV 460


>gi|293336578|ref|NP_001168380.1| uncharacterized protein LOC100382149 [Zea mays]
 gi|223947871|gb|ACN28019.1| unknown [Zea mays]
 gi|413955892|gb|AFW88541.1| hypothetical protein ZEAMMB73_254585 [Zea mays]
          Length = 651

 Score =  299 bits (766), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 189/582 (32%), Positives = 293/582 (50%), Gaps = 43/582 (7%)

Query: 33  LFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPER-NVVSWTAMICGLADAGRVCE 91
           LF L+   N  + N +L   L+ G       L+  MP   +  +   +    A  G V E
Sbjct: 65  LFGLVRSPNAFTCNTLLKAALRQGFPHLCFPLYASMPAAPDTYTHPLLAAACAARGDVRE 124

Query: 92  ARKLFEEMPER----NVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVE 147
             ++     +     N+   N+++      G +  AR+VF++ P+ + +SWN ++A YV 
Sbjct: 125 GLQVHSHSVKHGFSDNLYLRNALMHMYSACGCVASARRVFDAGPVWDAVSWNTILATYVR 184

Query: 148 CCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGF 207
              + +A+ +F  M ER+    ++M++ + R G VEE   +F     ++  +WTAM+  F
Sbjct: 185 DGDVEQAVKVFTRMPERSAAAVSAMVALFARRGMVEEARGVFDGAEHRDAFTWTAMVSCF 244

Query: 208 AWNGFHKESLLLFIEMK---------------------GICDNGNNC------------- 233
             N    E+L +F +M+                     G+  NG  C             
Sbjct: 245 ERNDLFMEALAVFSDMREEGWPVDEAVMVSVVAACAKSGVIQNGEVCHGLVVRAGLGSRV 304

Query: 234 NVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMP 293
           NVQ  N +I+ Y     +  A+ LFD     D  SW SMI GYL  G+V +A  LF  MP
Sbjct: 305 NVQ--NVLIHMYSSCQDVVAARRLFDNGESLDHFSWNSMISGYLKNGRVEDAKALFDVMP 362

Query: 294 DRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQ 353
           D+D V+W+AMI+G V N    EA  +F  MRAH + P + T   +  A    + ++ G+ 
Sbjct: 363 DKDNVSWSAMIAGCVHNNQSSEALNVFDSMRAHEIKPDDVTLVSVISACSNLSALEQGKL 422

Query: 354 IHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGL 413
           +H  + K +    ++L   LI MY KCG ++ A  +F  +  +    WN++++G + +GL
Sbjct: 423 VHEYIRKYQYNITIVLGTSLIDMYMKCGCMEAALEVFDMLEEKGTPCWNAVIVGLAMNGL 482

Query: 414 ANETLKVFESMLESGTH-PNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHY 472
              +L +F  M  +GT  PN +TF G+LSAC H GLV  G + F  M + Y+I P   HY
Sbjct: 483 VTRSLDMFSEMEATGTAVPNEITFTGVLSACRHGGLVEEGRQFFKLMQNKYQIVPNIRHY 542

Query: 473 VSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELD 532
             M++LLGRAG ++EAE+ +  +P  PD   WGALLGAC +  G++E+ E   K+L++LD
Sbjct: 543 GCMVDLLGRAGYVREAEDMIQSMPMSPDVPAWGALLGAC-WKHGDSEVGERVGKKLVKLD 601

Query: 533 PLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCS 574
           P +     +L NIYA+ G       LR  M  + V KV GCS
Sbjct: 602 PDHDGFQTMLSNIYASEGMWQCVKDLRGSMKQQHVAKVAGCS 643



 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 119/467 (25%), Positives = 210/467 (44%), Gaps = 51/467 (10%)

Query: 21  YSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMI 80
           YS  G +  A+ +F   P  + VS+N +L+ ++++G + +A ++F  MPER+  + +AM+
Sbjct: 151 YSACGCVASARRVFDAGPVWDAVSWNTILATYVRDGDVEQAVKVFTRMPERSAAAVSAMV 210

Query: 81  CGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSM-----PIKNV 135
              A  G V EAR +F+    R+  +W +MV    RN    EA  VF+ M     P+   
Sbjct: 211 ALFARRGMVEEARGVFDGAEHRDAFTWTAMVSCFERNDLFMEALAVFSDMREEGWPVDEA 270

Query: 136 I----------------------------------SWNAMIAGYVECCMMGEAIVLFEEM 161
           +                                    N +I  Y  C  +  A  LF+  
Sbjct: 271 VMVSVVAACAKSGVIQNGEVCHGLVVRAGLGSRVNVQNVLIHMYSSCQDVVAARRLFDNG 330

Query: 162 EERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFI 221
           E  +  +W SMISGY + G VE+   LF  MP K+ VSW+AMI G   N    E+L +F 
Sbjct: 331 ESLDHFSWNSMISGYLKNGRVEDAKALFDVMPDKDNVSWSAMIAGCVHNNQSSEALNVFD 390

Query: 222 EMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDE----ISWTSMIDGYL 277
            M+      ++  +    S+I+       LE+ + + + +         +  TS+ID Y+
Sbjct: 391 SMRAHEIKPDDVTLV---SVISACSNLSALEQGKLVHEYIRKYQYNITIVLGTSLIDMYM 447

Query: 278 SVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVP-PLNATFS 336
             G +  A  +F  + ++    W A+I GL  N L   +  +F EM A G   P   TF+
Sbjct: 448 KCGCMEAALEVFDMLEEKGTPCWNAVIVGLAMNGLVTRSLDMFSEMEATGTAVPNEITFT 507

Query: 337 VLFGAAGATANIDLGRQIHCVLM-KTESESDLILENCLISMYAKCGVIDNAYNIFSNM-V 394
            +  A      ++ GRQ   ++  K +   ++    C++ +  + G +  A ++  +M +
Sbjct: 508 GVLSACRHGGLVEEGRQFFKLMQNKYQIVPNIRHYGCMVDLLGRAGYVREAEDMIQSMPM 567

Query: 395 SRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILS 441
           S D+ +W +++     HG +    +V + +++    P+   F  +LS
Sbjct: 568 SPDVPAWGALLGACWKHGDSEVGERVGKKLVK--LDPDHDGFQTMLS 612



 Score = 88.6 bits (218), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 68/287 (23%), Positives = 137/287 (47%), Gaps = 22/287 (7%)

Query: 1   MSERNHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSE 60
           +  R + +++++H+ SS         +  A+ LF      +  S+N+M+SG+L+NGR+ +
Sbjct: 300 LGSRVNVQNVLIHMYSSCQD------VVAARRLFDNGESLDHFSWNSMISGYLKNGRVED 353

Query: 61  ARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLI---RN 117
           A+ LF+ MP+++ VSW+AMI G     +  EA  +F+ M    +   +  +V +I    N
Sbjct: 354 AKALFDVMPDKDNVSWSAMIAGCVHNNQSSEALNVFDSMRAHEIKPDDVTLVSVISACSN 413

Query: 118 GELNEARKVFNSMPIK-----NVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSM 172
               E  K+ +    K      ++   ++I  Y++C  M  A+ +F+ +EE+    W ++
Sbjct: 414 LSALEQGKLVHEYIRKYQYNITIVLGTSLIDMYMKCGCMEAALEVFDMLEEKGTPCWNAV 473

Query: 173 ISGYCRAGEVEEGYCLFRRMPRK-----NVVSWTAMIGGFAWNGFHKESLLLFIEMKGIC 227
           I G    G V     +F  M        N +++T ++      G  +E    F  M+   
Sbjct: 474 IVGLAMNGLVTRSLDMFSEMEATGTAVPNEITFTGVLSACRHGGLVEEGRQFFKLMQNKY 533

Query: 228 DNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEI-SWTSMI 273
               N     C  M++   R G + EA+++  ++P+  ++ +W +++
Sbjct: 534 QIVPNIRHYGC--MVDLLGRAGYVREAEDMIQSMPMSPDVPAWGALL 578


>gi|326498517|dbj|BAJ98686.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 647

 Score =  299 bits (766), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 196/583 (33%), Positives = 292/583 (50%), Gaps = 45/583 (7%)

Query: 33  LFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGR--VC 90
           L +L+   N  S N +L   L  G       L+  +P  +  ++T  I   A A R  V 
Sbjct: 62  LLRLVRCPNAFSCNTLLKAALLAGMPHLCLPLYTSLPA-SPDTYTHPILAAACAARRDVS 120

Query: 91  EARKLFEEMPER----NVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYV 146
           E R++           ++   N+++      G L +AR+VF++ P+ + +SWN ++A YV
Sbjct: 121 EGRQVQSHAIRHGFGDDLYLRNALMHMYSVCGCLWDARRVFDAGPVWDAVSWNTILAAYV 180

Query: 147 ECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGG 206
               + +A+ +F  M +RN    +SM+S + R G VEE   +F     +++ +WTAMI  
Sbjct: 181 HAGDVDQAVGVFARMPKRNATAVSSMVSLFGRRGMVEEARGVFDEAECRDIFTWTAMISC 240

Query: 207 FAWNGFHKESLLLFIEMKG---------------------ICDNGNNC------------ 233
           F  N    E+L +F  M+                      +  NG  C            
Sbjct: 241 FERNDMFAEALHMFSCMRREMWPVDEALMVSVVAACAQSEVIRNGELCHGLVIRAGLCSL 300

Query: 234 -NVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNM 292
            N+Q  N +I+ Y     +  A+ LFD+    D+ SW SMI GYL  G V NA  LF  M
Sbjct: 301 LNIQ--NVLIHMYSCCLDVVAARRLFDSGDCLDQFSWNSMIAGYLKNGHVENAMTLFSAM 358

Query: 293 PDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGR 352
           PD+D V+W+ MISG VQN     A  +F  MRA GV P   T   +  A    + ++ G+
Sbjct: 359 PDKDNVSWSTMISGCVQNNQSSHALTVFDNMRAQGVRPDEVTIVSVISACTNLSALEKGK 418

Query: 353 QIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHG 412
            +H  + + +    L+L   LI MY KCG ++ A ++F+ M  +    WN++++G + +G
Sbjct: 419 SVHDYVRQNKCYITLVLGTSLIDMYMKCGYLEAAMDVFNIMEEKGAPCWNAVIVGLAMNG 478

Query: 413 LANETLKVFESMLESGTH-PNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEH 471
           L  ++L++F  M  S T  PN +TF G+LSAC HAGLV  G   F  M   Y+I P   H
Sbjct: 479 LVTKSLEIFSEMEASSTAIPNEITFTGVLSACRHAGLVEEGRHFFKLMQHKYQIVPNIRH 538

Query: 472 YVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLEL 531
           Y  M++LLGRAG +KEAE+ +  +P  PD   WGALLGAC +  G  E+ E   ++L+ L
Sbjct: 539 YGCMVDLLGRAGYVKEAEDLIESMPMSPDVPAWGALLGAC-WKHGENEVGERVGRKLVNL 597

Query: 532 DPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCS 574
           DP +     +L NIYA  G     + LR  M  + V KV G S
Sbjct: 598 DPRHDGFQTMLSNIYAKEGMWQSVNDLRDSMKQRHVPKVSGYS 640



 Score =  142 bits (358), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 112/414 (27%), Positives = 193/414 (46%), Gaps = 26/414 (6%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWT 77
           +  Y   G +D+A  +F  MP+RN  + ++M+S F + G + EAR +F+E   R++ +WT
Sbjct: 176 LAAYVHAGDVDQAVGVFARMPKRNATAVSSMVSLFGRRGMVEEARGVFDEAECRDIFTWT 235

Query: 78  AMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVG---------LIRNGELNEARKVFN 128
           AMI          EA  +F  M         +++V          +IRNGEL     +  
Sbjct: 236 AMISCFERNDMFAEALHMFSCMRREMWPVDEALMVSVVAACAQSEVIRNGELCHGLVIRA 295

Query: 129 SM-PIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYC 187
            +  + N+   N +I  Y  C  +  A  LF+  +  +  +W SMI+GY + G VE    
Sbjct: 296 GLCSLLNI--QNVLIHMYSCCLDVVAARRLFDSGDCLDQFSWNSMIAGYLKNGHVENAMT 353

Query: 188 LFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIR 247
           LF  MP K+ VSW+ MI G   N     +L +F  M+     G   +  +  S+I+    
Sbjct: 354 LFSAMPDKDNVSWSTMISGCVQNNQSSHALTVFDNMRA---QGVRPDEVTIVSVISACTN 410

Query: 248 FGRLEEAQNLFDTVPVRDEISW------TSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWT 301
              LE+ +++ D   VR    +      TS+ID Y+  G +  A  +F+ M ++ A  W 
Sbjct: 411 LSALEKGKSVHDY--VRQNKCYITLVLGTSLIDMYMKCGYLEAAMDVFNIMEEKGAPCWN 468

Query: 302 AMISGLVQNELFVEATYLFMEMRAHGVP-PLNATFSVLFGAAGATANIDLGRQIHCVLM- 359
           A+I GL  N L  ++  +F EM A     P   TF+ +  A      ++ GR    ++  
Sbjct: 469 AVIVGLAMNGLVTKSLEIFSEMEASSTAIPNEITFTGVLSACRHAGLVEEGRHFFKLMQH 528

Query: 360 KTESESDLILENCLISMYAKCGVIDNAYNIFSNM-VSRDLVSWNSMVMGFSHHG 412
           K +   ++    C++ +  + G +  A ++  +M +S D+ +W +++     HG
Sbjct: 529 KYQIVPNIRHYGCMVDLLGRAGYVKEAEDLIESMPMSPDVPAWGALLGACWKHG 582



 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 61/219 (27%), Positives = 106/219 (48%), Gaps = 18/219 (8%)

Query: 16  SSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNV-- 73
           S I  Y K G ++ A  LF  MP ++ VS++ M+SG +QN + S A  +F+ M  + V  
Sbjct: 337 SMIAGYLKNGHVENAMTLFSAMPDKDNVSWSTMISGCVQNNQSSHALTVFDNMRAQGVRP 396

Query: 74  --VSWTAMICGLADAGRVCEARKLFEEMPER----NVVSWNSMVVGLIRNGELNEARKVF 127
             V+  ++I    +   + + + + + + +      +V   S++   ++ G L  A  VF
Sbjct: 397 DEVTIVSVISACTNLSALEKGKSVHDYVRQNKCYITLVLGTSLIDMYMKCGYLEAAMDVF 456

Query: 128 NSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEER-----NVVTWTSMISGYCRAGEV 182
           N M  K    WNA+I G     ++ +++ +F EME       N +T+T ++S    AG V
Sbjct: 457 NIMEEKGAPCWNAVIVGLAMNGLVTKSLEIFSEMEASSTAIPNEITFTGVLSACRHAGLV 516

Query: 183 EEGYCLFRRMPRK-----NVVSWTAMIGGFAWNGFHKES 216
           EEG   F+ M  K     N+  +  M+      G+ KE+
Sbjct: 517 EEGRHFFKLMQHKYQIVPNIRHYGCMVDLLGRAGYVKEA 555


>gi|15234006|ref|NP_193610.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206861|sp|Q9SN39.1|PP320_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g18750, chloroplastic; Flags: Precursor
 gi|4539394|emb|CAB37460.1| putative protein [Arabidopsis thaliana]
 gi|7268669|emb|CAB78877.1| putative protein [Arabidopsis thaliana]
 gi|332658686|gb|AEE84086.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 871

 Score =  299 bits (766), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 168/533 (31%), Positives = 288/533 (54%), Gaps = 18/533 (3%)

Query: 70  ERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNS 129
           ERN V   +++       RV  ARK+F+EM ER+V+SWNS++ G + NG   +   VF  
Sbjct: 228 ERNSVG-NSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQ 286

Query: 130 MPIKNV-ISWNAMIAGYVECC-----MMGEAI--VLFEEMEERNVVTWTSMISGYCRAGE 181
           M +  + I    +++ +  C       +G A+  +  +    R      +++  Y + G+
Sbjct: 287 MLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSREDRFCNTLLDMYSKCGD 346

Query: 182 VEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSM 241
           ++    +FR M  ++VVS+T+MI G+A  G   E++ LF EM+   + G + +V +  ++
Sbjct: 347 LDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEME---EEGISPDVYTVTAV 403

Query: 242 INGYIRFGRLEEAQNLFDTVPVRDE----ISWTSMIDGYLSVGQVSNAYYLFHNMPDRDA 297
           +N   R+  L+E + + + +   D         +++D Y   G +  A  +F  M  +D 
Sbjct: 404 LNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAELVFSEMRVKDI 463

Query: 298 VAWTAMISGLVQNELFVEATYLF-MEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHC 356
           ++W  +I G  +N    EA  LF + +      P   T + +  A  + +  D GR+IH 
Sbjct: 464 ISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPACASLSAFDKGREIHG 523

Query: 357 VLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANE 416
            +M+    SD  + N L+ MYAKCG +  A+ +F ++ S+DLVSW  M+ G+  HG   E
Sbjct: 524 YIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDDIASKDLVSWTVMIAGYGMHGFGKE 583

Query: 417 TLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMI 476
            + +F  M ++G   + ++F+ +L ACSH+GLV  GW  FN M    KI+P  EHY  ++
Sbjct: 584 AIALFNQMRQAGIEADEISFVSLLYACSHSGLVDEGWRFFNIMRHECKIEPTVEHYACIV 643

Query: 477 NLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNA 536
           ++L R G + +A  F+  +P  PD  IWGALL  C     + ++AE  A+++ EL+P N 
Sbjct: 644 DMLARTGDLIKAYRFIENMPIPPDATIWGALLCGCRI-HHDVKLAEKVAEKVFELEPENT 702

Query: 537 PAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGD 589
             +V++ NIYA + +  +  +LR  +G +G+RK PGCSW+   G + +F++GD
Sbjct: 703 GYYVLMANIYAEAEKWEQVKRLRKRIGQRGLRKNPGCSWIEIKGRVNIFVAGD 755



 Score =  142 bits (358), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 121/475 (25%), Positives = 214/475 (45%), Gaps = 77/475 (16%)

Query: 16  SSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEM----PER 71
           S +  Y K   +D A+ +F  M +R+V+S+N++++G++ NG   +   +F +M     E 
Sbjct: 235 SLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLVSGIEI 294

Query: 72  NVVSWTAMICGLADAGRVCEARKL----FEEMPERNVVSWNSMVVGLIRNGELNEARKVF 127
           ++ +  ++  G AD+  +   R +     +    R     N+++    + G+L+ A+ VF
Sbjct: 295 DLATIVSVFAGCADSRLISLGRAVHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVF 354

Query: 128 NSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEE------------------------ 163
             M  ++V+S+ +MIAGY    + GEA+ LFEEMEE                        
Sbjct: 355 REMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLD 414

Query: 164 --RNVVTW-------------TSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFA 208
             + V  W              +++  Y + G ++E   +F  M  K+++SW  +IGG++
Sbjct: 415 EGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAELVFSEMRVKDIISWNTIIGGYS 474

Query: 209 WNGFHKESLLLF---IEMKGICDNGNN--CNVQSCNSM--------INGYI-RFGRLEEA 254
            N +  E+L LF   +E K    +     C + +C S+        I+GYI R G     
Sbjct: 475 KNCYANEALSLFNLLLEEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMRNGYFS-- 532

Query: 255 QNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFV 314
                     D     S++D Y   G +  A+ LF ++  +D V+WT MI+G   +    
Sbjct: 533 ----------DRHVANSLVDMYAKCGALLLAHMLFDDIASKDLVSWTVMIAGYGMHGFGK 582

Query: 315 EATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILEN--C 372
           EA  LF +MR  G+     +F  L  A   +  +D G +   + M+ E + +  +E+  C
Sbjct: 583 EAIALFNQMRQAGIEADEISFVSLLYACSHSGLVDEGWRFFNI-MRHECKIEPTVEHYAC 641

Query: 373 LISMYAKCGVIDNAYNIFSNM-VSRDLVSWNSMVMGFSHHGLANETLKVFESMLE 426
           ++ M A+ G +  AY    NM +  D   W +++ G   H       KV E + E
Sbjct: 642 IVDMLARTGDLIKAYRFIENMPIPPDATIWGALLCGCRIHHDVKLAEKVAEKVFE 696



 Score =  141 bits (356), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 116/474 (24%), Positives = 205/474 (43%), Gaps = 67/474 (14%)

Query: 39  QRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEE 98
            R+V   N  L  F ++G L  A +L     + ++   T     L    ++C   K  ++
Sbjct: 58  DRSVTDANTQLRRFCESGNLENAVKLLCVSGKWDIDPRT-----LCSVLQLCADSKSLKD 112

Query: 99  MPE-RNVVSWNSMVVG----------LIRNGELNEARKVFNSMPIKNVISWNAMIAGYVE 147
             E  N +  N  V+               G+L EA +VF+ + I+  + WN ++    +
Sbjct: 113 GKEVDNFIRGNGFVIDSNLGSKLSLMYTNCGDLKEASRVFDEVKIEKALFWNILMNELAK 172

Query: 148 CCMMGEAIVLFEEM----------------------------------------EERNVV 167
                 +I LF++M                                         ERN V
Sbjct: 173 SGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSVHGGEQLHGFILKSGFGERNSV 232

Query: 168 TWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGIC 227
              S+++ Y +   V+    +F  M  ++V+SW ++I G+  NG  ++ L +F++M    
Sbjct: 233 G-NSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQM---L 288

Query: 228 DNGNNCNVQSCNSMING-----YIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQV 282
            +G   ++ +  S+  G      I  GR   +  +       D    T ++D Y   G +
Sbjct: 289 VSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSREDRFCNT-LLDMYSKCGDL 347

Query: 283 SNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAA 342
            +A  +F  M DR  V++T+MI+G  +  L  EA  LF EM   G+ P   T + +    
Sbjct: 348 DSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCC 407

Query: 343 GATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWN 402
                +D G+++H  + + +   D+ + N L+ MYAKCG +  A  +FS M  +D++SWN
Sbjct: 408 ARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAELVFSEMRVKDIISWN 467

Query: 403 SMVMGFSHHGLANETLKVFESMLESGT-HPNSVTFLGILSACSHAGLVSRGWEL 455
           +++ G+S +  ANE L +F  +LE     P+  T   +L AC+      +G E+
Sbjct: 468 TIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPACASLSAFDKGREI 521



 Score = 40.0 bits (92), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 47/217 (21%), Positives = 90/217 (41%), Gaps = 23/217 (10%)

Query: 11  VVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYN-----------AMLSGFLQNGRLS 59
           ++   + I  YSK  + +EA +LF L+ +    S +           A LS F +   + 
Sbjct: 463 IISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPACASLSAFDKGREIH 522

Query: 60  EARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGE 119
                     +R+V +  +++   A  G +  A  LF+++  +++VSW  M+ G   +G 
Sbjct: 523 GYIMRNGYFSDRHVAN--SLVDMYAKCGALLLAHMLFDDIASKDLVSWTVMIAGYGMHGF 580

Query: 120 LNEARKVFNSMPIKNV----ISWNAMIAGYVECCMMGEAIVLFEEME-----ERNVVTWT 170
             EA  +FN M    +    IS+ +++       ++ E    F  M      E  V  + 
Sbjct: 581 GKEAIALFNQMRQAGIEADEISFVSLLYACSHSGLVDEGWRFFNIMRHECKIEPTVEHYA 640

Query: 171 SMISGYCRAGEVEEGYCLFRRMP-RKNVVSWTAMIGG 206
            ++    R G++ + Y     MP   +   W A++ G
Sbjct: 641 CIVDMLARTGDLIKAYRFIENMPIPPDATIWGALLCG 677


>gi|15232006|ref|NP_187516.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207468|sp|Q9SS83.1|PP220_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g09040, mitochondrial; Flags: Precursor
 gi|5923669|gb|AAD56320.1|AC009326_7 hypothetical protein [Arabidopsis thaliana]
 gi|332641192|gb|AEE74713.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 1028

 Score =  299 bits (766), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 189/637 (29%), Positives = 330/637 (51%), Gaps = 57/637 (8%)

Query: 15  TSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPE---- 70
           +S ++ YSK   ++ A  +F+ + ++N V +NAM+ G+  NG   +   LF +M      
Sbjct: 366 SSLVSMYSKCEKMEAAAKVFEALEEKNDVFWNAMIRGYAHNGESHKVMELFMDMKSSGYN 425

Query: 71  -----------------------------------RNVVSWTAMICGLADAGRVCEARKL 95
                                              +N+    A++   A  G + +AR++
Sbjct: 426 IDDFTFTSLLSTCAASHDLEMGSQFHSIIIKKKLAKNLFVGNALVDMYAKCGALEDARQI 485

Query: 96  FEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAI 155
           FE M +R+ V+WN+++   +++   +EA  +F  M +  ++S  A +A  ++ C     +
Sbjct: 486 FERMCDRDNVTWNTIIGSYVQDENESEAFDLFKRMNLCGIVSDGACLASTLKACTHVHGL 545

Query: 156 VLFEEME--------ERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGF 207
              +++         +R++ T +S+I  Y + G +++   +F  +P  +VVS  A+I G+
Sbjct: 546 YQGKQVHCLSVKCGLDRDLHTGSSLIDMYSKCGIIKDARKVFSSLPEWSVVSMNALIAGY 605

Query: 208 AWNGFHKESLLLFIEMKGICDNGNNCN----VQSCNSMINGYIRFGRLEEAQNLFDTVPV 263
           + N   +E+++LF EM     N +       V++C+   +  +  G     Q        
Sbjct: 606 SQNNL-EEAVVLFQEMLTRGVNPSEITFATIVEACHKPES--LTLGTQFHGQITKRGFSS 662

Query: 264 RDEISWTSMIDGYLSVGQVSNAYYLFHNMPD-RDAVAWTAMISGLVQNELFVEATYLFME 322
             E    S++  Y++   ++ A  LF  +   +  V WT M+SG  QN  + EA   + E
Sbjct: 663 EGEYLGISLLGMYMNSRGMTEACALFSELSSPKSIVLWTGMMSGHSQNGFYEEALKFYKE 722

Query: 323 MRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGV 382
           MR  GV P  ATF  +       +++  GR IH ++     + D +  N LI MYAKCG 
Sbjct: 723 MRHDGVLPDQATFVTVLRVCSVLSSLREGRAIHSLIFHLAHDLDELTSNTLIDMYAKCGD 782

Query: 383 IDNAYNIFSNMVSR-DLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILS 441
           +  +  +F  M  R ++VSWNS++ G++ +G A + LK+F+SM +S   P+ +TFLG+L+
Sbjct: 783 MKGSSQVFDEMRRRSNVVSWNSLINGYAKNGYAEDALKIFDSMRQSHIMPDEITFLGVLT 842

Query: 442 ACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDH 501
           ACSHAG VS G ++F  M   Y I+   +H   M++LLGR G ++EA++F+     +PD 
Sbjct: 843 ACSHAGKVSDGRKIFEMMIGQYGIEARVDHVACMVDLLGRWGYLQEADDFIEAQNLKPDA 902

Query: 502 RIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMD 561
           R+W +LLGAC    G+    E +A++L+EL+P N+ A+V+L NIYA+ G   + + LR  
Sbjct: 903 RLWSSLLGACRI-HGDDIRGEISAEKLIELEPQNSSAYVLLSNIYASQGCWEKANALRKV 961

Query: 562 MGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
           M  +GV+KVPG SW+       +F +GDK  +++ +I
Sbjct: 962 MRDRGVKKVPGYSWIDVEQRTHIFAAGDKSHSEIGKI 998



 Score =  165 bits (418), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 123/516 (23%), Positives = 241/516 (46%), Gaps = 32/516 (6%)

Query: 6   HPKSLVVHLTSS-------ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRL 58
           H KSL++ + S        +  Y+K   +  A+  F  + +++V ++N+MLS +   G+ 
Sbjct: 83  HSKSLILGIDSEGRLGNAIVDLYAKCAQVSYAEKQFDFL-EKDVTAWNSMLSMYSSIGKP 141

Query: 59  SEARR----LFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMP----ERNVVSWNSM 110
            +  R    LFE     N  +++ ++   A    V   R++   M     ERN     ++
Sbjct: 142 GKVLRSFVSLFENQIFPNKFTFSIVLSTCARETNVEFGRQIHCSMIKMGLERNSYCGGAL 201

Query: 111 VVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEER----NV 166
           V    +   +++AR+VF  +   N + W  + +GYV+  +  EA+++FE M +     + 
Sbjct: 202 VDMYAKCDRISDARRVFEWIVDPNTVCWTCLFSGYVKAGLPEEAVLVFERMRDEGHRPDH 261

Query: 167 VTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGI 226
           + + ++I+ Y R G++++   LF  M   +VV+W  MI G    G    ++  F  M+  
Sbjct: 262 LAFVTVINTYIRLGKLKDARLLFGEMSSPDVVAWNVMISGHGKRGCETVAIEYFFNMRKS 321

Query: 227 CDNGNNCNVQSCNSMIN--GYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSN 284
                   + S  S I     +  G +  A+ +   +     +  +S++  Y    ++  
Sbjct: 322 SVKSTRSTLGSVLSAIGIVANLDLGLVVHAEAIKLGLASNIYVG-SSLVSMYSKCEKMEA 380

Query: 285 AYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGA 344
           A  +F  + +++ V W AMI G   N    +   LFM+M++ G    + TF+ L     A
Sbjct: 381 AAKVFEALEEKNDVFWNAMIRGYAHNGESHKVMELFMDMKSSGYNIDDFTFTSLLSTCAA 440

Query: 345 TANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSM 404
           + ++++G Q H +++K +   +L + N L+ MYAKCG +++A  IF  M  RD V+WN++
Sbjct: 441 SHDLEMGSQFHSIIIKKKLAKNLFVGNALVDMYAKCGALEDARQIFERMCDRDNVTWNTI 500

Query: 405 VMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYK 464
           +  +      +E   +F+ M   G   +       L AC+H   + +G ++         
Sbjct: 501 IGSYVQDENESEAFDLFKRMNLCGIVSDGACLASTLKACTHVHGLYQGKQVH-----CLS 555

Query: 465 IQPGPEHYV----SMINLLGRAGKIKEAEEFVLRLP 496
           ++ G +  +    S+I++  + G IK+A +    LP
Sbjct: 556 VKCGLDRDLHTGSSLIDMYSKCGIIKDARKVFSSLP 591



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 116/513 (22%), Positives = 228/513 (44%), Gaps = 82/513 (15%)

Query: 35  QLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPER--------NVVSWTAMICGLADA 86
            ++P  + + +  +L   L   +L ++R++F+EMP+R          V   ++I G+   
Sbjct: 36  HVLPSHDQI-HQRLLEICLGQCKLFKSRKVFDEMPQRLALALRIGKAVHSKSLILGIDSE 94

Query: 87  GR--------------VCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSM-- 130
           GR              V  A K F+ + E++V +WNSM+      G+  +  + F S+  
Sbjct: 95  GRLGNAIVDLYAKCAQVSYAEKQFDFL-EKDVTAWNSMLSMYSSIGKPGKVLRSFVSLFE 153

Query: 131 ----PIKNVIS---------WNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYC 177
               P K   S          N      + C M+   +       ERN     +++  Y 
Sbjct: 154 NQIFPNKFTFSIVLSTCARETNVEFGRQIHCSMIKMGL-------ERNSYCGGALVDMYA 206

Query: 178 RAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQS 237
           +   + +   +F  +   N V WT +  G+   G  +E++L+F  M+   D G+      
Sbjct: 207 KCDRISDARRVFEWIVDPNTVCWTCLFSGYVKAGLPEEAVLVFERMR---DEGHR----- 258

Query: 238 CNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDA 297
                                      D +++ ++I+ Y+ +G++ +A  LF  M   D 
Sbjct: 259 --------------------------PDHLAFVTVINTYIRLGKLKDARLLFGEMSSPDV 292

Query: 298 VAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCV 357
           VAW  MISG  +      A   F  MR   V    +T   +  A G  AN+DLG  +H  
Sbjct: 293 VAWNVMISGHGKRGCETVAIEYFFNMRKSSVKSTRSTLGSVLSAIGIVANLDLGLVVHAE 352

Query: 358 LMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANET 417
            +K    S++ + + L+SMY+KC  ++ A  +F  +  ++ V WN+M+ G++H+G +++ 
Sbjct: 353 AIKLGLASNIYVGSSLVSMYSKCEKMEAAAKVFEALEEKNDVFWNAMIRGYAHNGESHKV 412

Query: 418 LKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMIN 477
           +++F  M  SG + +  TF  +LS C+ +  +  G + F+++    K+        ++++
Sbjct: 413 MELFMDMKSSGYNIDDFTFTSLLSTCAASHDLEMGSQ-FHSIIIKKKLAKNLFVGNALVD 471

Query: 478 LLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGA 510
           +  + G +++A +   R+  + D+  W  ++G+
Sbjct: 472 MYAKCGALEDARQIFERMC-DRDNVTWNTIIGS 503


>gi|359492699|ref|XP_002280968.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g19720-like [Vitis vinifera]
          Length = 1545

 Score =  299 bits (766), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 205/664 (30%), Positives = 330/664 (49%), Gaps = 89/664 (13%)

Query: 15  TSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVV 74
           T  ++ Y+K G + EA+ +F  M +RN+ +++AM+  + +     E  + F  M E  +V
Sbjct: 123 TKLVSMYAKCGSLGEARKVFGEMRERNLYAWSAMIGAYSREQMWREVVQHFFFMMEDGIV 182

Query: 75  SWTAMICGLADAGRVC---EARKLFEEMPER-----NVVSWNSMVVGLIRNGELNEARKV 126
               ++  +  A   C   E  KL   +  R     N+   NS++    + G L+ AR+ 
Sbjct: 183 PDEFLLPKILQACGNCGDAETGKLIHSLVIRCGMNFNIRVSNSILAVYAKCGRLSCARRF 242

Query: 127 FNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNV----VTWTSMISGYCRAGEV 182
           F +M  ++ +SWN++I GY +   + ++  LFE+M+E  +    VTW  +I+ Y ++G+ 
Sbjct: 243 FENMDYRDRVSWNSIITGYCQKGELEKSHQLFEKMQEEGIEPGLVTWNILINSYSQSGKC 302

Query: 183 EEGYCLFRRMPR----KNVVSWTAMIGGFAWNGFHKESLLLFIEM--KGICDNGNNCN-- 234
           ++   L ++M       +V +WT+MI GFA N    ++L LF EM   GI  NG      
Sbjct: 303 DDAMELMKKMESFRIVPDVFTWTSMISGFAQNNRRSQALELFREMLLAGIEPNGVTVTSG 362

Query: 235 VQSC----------------------------NSMINGYIRFGRLEEAQNLFDTVPVRDE 266
           + +C                            NS+I+ Y + G LE+A+ +FD +  +D 
Sbjct: 363 ISACASLKALKKGMELHSVAVKIGCVEDLLVGNSLIDMYSKSGELEDARRVFDMILKKDV 422

Query: 267 ISWTSMIDGYLSVGQVSNAYYLFHNMPDRDA----VAWTAMISGLVQN-------ELF-- 313
            +W SMI GY   G    AY LF  M + D     V W AMISG +QN       +LF  
Sbjct: 423 YTWNSMIGGYCQAGYCGKAYDLFIKMHESDVPPNVVTWNAMISGYIQNGDEDQAMDLFHR 482

Query: 314 ----------------VEATYL-----------FMEMRAHGVPPLNATFSVLFGAAGATA 346
                           + A YL           F +M++  + P + T   +  A     
Sbjct: 483 MEKDGLIKRDTASWNSLIAGYLQNGHKNKALGIFRQMQSFCIRPNSVTMLSILPACANLV 542

Query: 347 NIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVM 406
                ++IH  +++    S+L + NCLI  YAK G I  A  IF  + S+D++SWNS++ 
Sbjct: 543 AAKKVKEIHGCILRRNLGSELSVANCLIDTYAKSGNIVYAQTIFQGISSKDIISWNSLIA 602

Query: 407 GFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQ 466
           G+  HG ++  L +F+ M + G  P+  TFL I+ A S +G+V +G ++F++M + Y+I 
Sbjct: 603 GYVLHGCSDSALDLFDQMTKMGVKPSRGTFLSIIYAFSLSGMVDKGKQVFSSMMEDYQIL 662

Query: 467 PGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAK 526
           PG EH+ +MI+LLGR+GK+ EA EF+  +  EPD  IW ALL A     GN  +A  A +
Sbjct: 663 PGLEHHSAMIDLLGRSGKLGEAIEFIEDMAIEPDSCIWAALLTASKI-HGNIGLAIRAGE 721

Query: 527 RLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFL 586
            LLEL+P N   H  +  +YA SG+  +  KLR        ++  GCSW+     +  F+
Sbjct: 722 CLLELEPSNFSIHQQILQMYALSGKFEDVSKLRKSEKRSETKQPLGCSWIEAKNIVHTFV 781

Query: 587 SGDK 590
           + D+
Sbjct: 782 ADDR 785



 Score =  152 bits (385), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 130/473 (27%), Positives = 199/473 (42%), Gaps = 82/473 (17%)

Query: 36  LMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPE--RNVVSWTAMIC-------GLADA 86
           L P+      +A L+   +NGRL++A    + + +   NV   T M         G A+ 
Sbjct: 44  LTPKLKPKVTDAHLNHLCKNGRLADAIACLDAIAQGGSNVKPNTYMQLLQSCIDQGSAEL 103

Query: 87  GRVCEAR-KLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGY 145
           GR   AR  L EEM   N      +V    + G L EARKVF  M  +N+ +W+AMI  Y
Sbjct: 104 GRKLHARIGLLEEM---NPFVETKLVSMYAKCGSLGEARKVFGEMRERNLYAWSAMIGAY 160

Query: 146 VECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIG 205
               M  E +  F  M E  +V    ++    +A     G C                  
Sbjct: 161 SREQMWREVVQHFFFMMEDGIVPDEFLLPKILQAC----GNC------------------ 198

Query: 206 GFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRD 265
           G A  G    SL++   M        N N++  NS++  Y + GRL  A+  F+ +  RD
Sbjct: 199 GDAETGKLIHSLVIRCGM--------NFNIRVSNSILAVYAKCGRLSCARRFFENMDYRD 250

Query: 266 EISWTSMIDGYLSVGQVSNAYYLFHNMPDR------------------------------ 295
            +SW S+I GY   G++  ++ LF  M +                               
Sbjct: 251 RVSWNSIITGYCQKGELEKSHQLFEKMQEEGIEPGLVTWNILINSYSQSGKCDDAMELMK 310

Query: 296 ---------DAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATA 346
                    D   WT+MISG  QN    +A  LF EM   G+ P   T +    A  +  
Sbjct: 311 KMESFRIVPDVFTWTSMISGFAQNNRRSQALELFREMLLAGIEPNGVTVTSGISACASLK 370

Query: 347 NIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVM 406
            +  G ++H V +K     DL++ N LI MY+K G +++A  +F  ++ +D+ +WNSM+ 
Sbjct: 371 ALKKGMELHSVAVKIGCVEDLLVGNSLIDMYSKSGELEDARRVFDMILKKDVYTWNSMIG 430

Query: 407 GFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAM 459
           G+   G   +   +F  M ES   PN VT+  ++S     G   +  +LF+ M
Sbjct: 431 GYCQAGYCGKAYDLFIKMHESDVPPNVVTWNAMISGYIQNGDEDQAMDLFHRM 483



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 88/357 (24%), Positives = 162/357 (45%), Gaps = 24/357 (6%)

Query: 223 MKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEIS---WTSMIDGYLSV 279
           +  I   G+N    +   ++   I  G  E  + L   + + +E++    T ++  Y   
Sbjct: 73  LDAIAQGGSNVKPNTYMQLLQSCIDQGSAELGRKLHARIGLLEEMNPFVETKLVSMYAKC 132

Query: 280 GQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLF 339
           G +  A  +F  M +R+  AW+AMI    + +++ E    F  M   G+ P       + 
Sbjct: 133 GSLGEARKVFGEMRERNLYAWSAMIGAYSREQMWREVVQHFFFMMEDGIVPDEFLLPKIL 192

Query: 340 GAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLV 399
            A G   + + G+ IH ++++     ++ + N ++++YAKCG +  A   F NM  RD V
Sbjct: 193 QACGNCGDAETGKLIHSLVIRCGMNFNIRVSNSILAVYAKCGRLSCARRFFENMDYRDRV 252

Query: 400 SWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAM 459
           SWNS++ G+   G   ++ ++FE M E G  P  VT+  ++++ S +G      EL   M
Sbjct: 253 SWNSIITGYCQKGELEKSHQLFEKMQEEGIEPGLVTWNILINSYSQSGKCDDAMELMKKM 312

Query: 460 FDVYKIQPGPEHYVSMINLLGRAGKIKEAEEF---VLRLPFEPDHRIWGALLGACGFCEG 516
            + ++I P    + SMI+   +  +  +A E    +L    EP+     + + AC     
Sbjct: 313 -ESFRIVPDVFTWTSMISGFAQNNRRSQALELFREMLLAGIEPNGVTVTSGISACA---- 367

Query: 517 NAEIAEHAAKRLLELDPLNAPAHVV--------LCNIYAASGRHVEEHKLRMDMGLK 565
               +  A K+ +EL  +      V        L ++Y+ SG  +E+ +   DM LK
Sbjct: 368 ----SLKALKKGMELHSVAVKIGCVEDLLVGNSLIDMYSKSGE-LEDARRVFDMILK 419


>gi|297824945|ref|XP_002880355.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297326194|gb|EFH56614.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 599

 Score =  299 bits (766), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 167/489 (34%), Positives = 269/489 (55%), Gaps = 3/489 (0%)

Query: 103 NVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEME 162
           N +  N ++   ++ G+  +A KVF+ M ++N+ SWN M++G+V+  M+  A V+F+ M 
Sbjct: 81  NTLLSNHLIGMYMKCGKPIDACKVFDQMHLRNLYSWNNMVSGFVKSGMLVRARVVFDSMP 140

Query: 163 ERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIE 222
           ER+VV+W +M+ GY + G + E    F+ + R  +        G          L L  +
Sbjct: 141 ERDVVSWNTMVIGYAQDGNLHEALWFFKELRRSGIKFNEFSFAGLLTACVKSRQLQLNQQ 200

Query: 223 MKG-ICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQ 281
             G +   G   NV    S+I+ Y + G++E A+  FD + V+D   WT++I GY  +G 
Sbjct: 201 AHGQVLVAGFLSNVVLSCSIIDAYAKCGQMESAKRCFDEMTVKDIHIWTTLISGYAKLGD 260

Query: 282 VSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGA 341
           +  A  LF  MP+++ V+WTA+I+G V+      A  LF +M A  V P   TFS    A
Sbjct: 261 MEAADKLFREMPEKNPVSWTALIAGYVRQGSGDLALDLFRKMIAMRVKPEQFTFSSCLCA 320

Query: 342 AGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSR-DLVS 400
           + + A++  G+QIH  +++T    + I+ + LI MY+K G ++ +  +F     + D V 
Sbjct: 321 SASIASLRHGKQIHGYMIRTNVRPNAIVTSSLIDMYSKSGSLEASERVFRICYDKQDCVL 380

Query: 401 WNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMF 460
           WN+M+   + HGL ++ L++ + M++   HPN  T + IL+ACSH+GLV  G   F +M 
Sbjct: 381 WNTMISALAQHGLGHKALQMLDDMIKFRVHPNRTTLVVILNACSHSGLVEEGVRWFESMT 440

Query: 461 DVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEI 520
             + I P  EHY  +I+LLGRAG  KE    +  +PFEPD  IW A+LG C    GN E+
Sbjct: 441 VQHGIVPDQEHYACLIDLLGRAGCFKELMSKIEEMPFEPDKHIWNAILGVCRI-HGNEEL 499

Query: 521 AEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNG 580
            + AA+ L++LDP ++  +++L +IYA  G+     KLR  M  + V K    SW+    
Sbjct: 500 GKKAAEELIKLDPESSAPYILLSSIYADHGKWELVEKLRGIMKKRRVNKEKAVSWIEIEN 559

Query: 581 GIQMFLSGD 589
            ++ F   D
Sbjct: 560 KVKAFTVSD 568



 Score =  155 bits (392), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 128/416 (30%), Positives = 197/416 (47%), Gaps = 20/416 (4%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWT 77
           I  Y K G   +A  +F  M  RN+ S+N M+SGF+++G L  AR +F+ MPER+VVSW 
Sbjct: 89  IGMYMKCGKPIDACKVFDQMHLRNLYSWNNMVSGFVKSGMLVRARVVFDSMPERDVVSWN 148

Query: 78  AMICGLADAGRVCEARKLFEEMPERNVVSWNSM-VVGLI------RNGELNEAR--KVFN 128
            M+ G A  G + EA   F+E+  R+ + +N     GL+      R  +LN+    +V  
Sbjct: 149 TMVIGYAQDGNLHEALWFFKEL-RRSGIKFNEFSFAGLLTACVKSRQLQLNQQAHGQVLV 207

Query: 129 SMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCL 188
           +  + NV+   ++I  Y +C  M  A   F+EM  +++  WT++ISGY + G++E    L
Sbjct: 208 AGFLSNVVLSCSIIDAYAKCGQMESAKRCFDEMTVKDIHIWTTLISGYAKLGDMEAADKL 267

Query: 189 FRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQS--CNSMINGYI 246
           FR MP KN VSWTA+I G+   G    +L LF +M  +          S  C S     +
Sbjct: 268 FREMPEKNPVSWTALIAGYVRQGSGDLALDLFRKMIAMRVKPEQFTFSSCLCASASIASL 327

Query: 247 RFGRLEEAQNLFDTVPVR-DEISWTSMIDGYLSVGQVSNAYYLFHNMPDR-DAVAWTAMI 304
           R G+  +         VR + I  +S+ID Y   G +  +  +F    D+ D V W  MI
Sbjct: 328 RHGK--QIHGYMIRTNVRPNAIVTSSLIDMYSKSGSLEASERVFRICYDKQDCVLWNTMI 385

Query: 305 SGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLG-RQIHCVLMKTES 363
           S L Q+ L  +A  +  +M    V P   T  V+  A   +  ++ G R    + ++   
Sbjct: 386 SALAQHGLGHKALQMLDDMIKFRVHPNRTTLVVILNACSHSGLVEEGVRWFESMTVQHGI 445

Query: 364 ESDLILENCLISMYAKCGVIDNAYNIFSNM-VSRDLVSWNSMVMGFSHHGLANETL 418
             D     CLI +  + G      +    M    D   WN+++     HG  NE L
Sbjct: 446 VPDQEHYACLIDLLGRAGCFKELMSKIEEMPFEPDKHIWNAILGVCRIHG--NEEL 499



 Score = 75.9 bits (185), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 73/307 (23%), Positives = 127/307 (41%), Gaps = 45/307 (14%)

Query: 11  VVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPE 70
           VV   S I  Y+K G ++ AK  F  M  +++  +  ++SG+ + G +  A +LF EMPE
Sbjct: 214 VVLSCSIIDAYAKCGQMESAKRCFDEMTVKDIHIWTTLISGYAKLGDMEAADKLFREMPE 273

Query: 71  RNVVSWTAMICGLADAGRVCEARKLFEEM------PERNVVSWNSMVVGLIRNGELNEAR 124
           +N VSWTA+I G    G    A  LF +M      PE+   +++S +        L   +
Sbjct: 274 KNPVSWTALIAGYVRQGSGDLALDLFRKMIAMRVKPEQ--FTFSSCLCASASIASLRHGK 331

Query: 125 KVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEE 184
           ++   M   NV                             N +  +S+I  Y ++G +E 
Sbjct: 332 QIHGYMIRTNV---------------------------RPNAIVTSSLIDMYSKSGSLEA 364

Query: 185 GYCLFRR-MPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMIN 243
              +FR    +++ V W  MI   A +G   ++L +  +M     + N   +     ++N
Sbjct: 365 SERVFRICYDKQDCVLWNTMISALAQHGLGHKALQMLDDMIKFRVHPNRTTLV---VILN 421

Query: 244 GYIRFGRLEEAQNLFDTVPVR-----DEISWTSMIDGYLSVGQVSNAYYLFHNMP-DRDA 297
                G +EE    F+++ V+     D+  +  +ID     G           MP + D 
Sbjct: 422 ACSHSGLVEEGVRWFESMTVQHGIVPDQEHYACLIDLLGRAGCFKELMSKIEEMPFEPDK 481

Query: 298 VAWTAMI 304
             W A++
Sbjct: 482 HIWNAIL 488


>gi|359497290|ref|XP_002268807.2| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49710-like [Vitis vinifera]
          Length = 719

 Score =  299 bits (765), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 187/557 (33%), Positives = 306/557 (54%), Gaps = 18/557 (3%)

Query: 56  GRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLI 115
           GRL+ AR+ F+++ + NV S+ A+I   A   R   A +LF+++PE ++VS+N+++    
Sbjct: 57  GRLAWARKAFQDISDPNVFSFNAIIAAYAKESRPLIAHQLFDQIPEPDLVSYNTLISAYA 116

Query: 116 RNGELNEARKVFNSMPIKNV-ISWNAMIAGYVECC----MMGE-AIVLFEEMEERNVVTW 169
             GE   A  +F+ M    + +    + A    CC    ++G+   V      +  V   
Sbjct: 117 DCGETAPALGLFSGMREMGLDMDGFTLSAVITACCDDVGLIGQLHSVAVSSGFDSYVSVN 176

Query: 170 TSMISGYCRAGEVEEGYCLFRRMPR-KNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICD 228
            ++++ Y + G++++   +F  M   ++ VSW +MI  +  +    ++L LF EM     
Sbjct: 177 NALLTYYGKNGDLDDAKRVFYGMGGIRDEVSWNSMIVAYGQHQEGSKALGLFQEM---VR 233

Query: 229 NGNNCNVQSCNSMINGYIRF----GRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQ-VS 283
            G N ++ +  S++  +       G L+    L  T   ++    + +ID Y   G  +S
Sbjct: 234 RGLNVDMFTLASVLTAFTCLEDLSGGLQFHGQLIKTGFHQNSHVGSGLIDLYSKCGGGMS 293

Query: 284 NAYYLFHNMPDRDAVAWTAMISGLVQNELFVE-ATYLFMEMRAHGVPPLNATFSVLFGAA 342
           +   +F  + + D V W  M+SG  QNE F+E A   F +M+  G  P + +F  +  A 
Sbjct: 294 DCRKVFEEITEPDLVLWNTMVSGYSQNEEFLEDALECFRQMQGIGYRPNDCSFVCVISAC 353

Query: 343 GATANIDLGRQIHCVLMKTESESDLI-LENCLISMYAKCGVIDNAYNIFSNMVSRDLVSW 401
              ++   G+QIH + +K++  S+ I ++N LI+MY+KCG + +A  +F  M   + VS 
Sbjct: 354 SNLSSPSQGKQIHSLALKSDIPSNRISVDNALIAMYSKCGNLQDARRLFDRMAEHNTVSL 413

Query: 402 NSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFD 461
           NSM+ G++ HG+  E+L +F+ MLE    P S+TF+ +LSAC+H G V  GW  FN M +
Sbjct: 414 NSMIAGYAQHGIEMESLHLFQWMLERQIAPTSITFISVLSACAHTGRVEEGWNYFNMMKE 473

Query: 462 VYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIA 521
            + I+P  EHY  MI+LLGRAGK+ EAE  + R+PF P    W +LLGAC    GN E+A
Sbjct: 474 KFNIEPEAEHYSCMIDLLGRAGKLSEAENLIARMPFNPGSIGWASLLGACR-THGNIELA 532

Query: 522 EHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGG 581
             AA ++L+L+P NA  +VVL N+YA++GR  E   +R  M  +GV+K PGCSW+     
Sbjct: 533 VKAANQVLQLEPSNAAPYVVLSNMYASAGRWEEVATVRKFMRDRGVKKKPGCSWIEVKKR 592

Query: 582 IQMFLSGDKIPAQVAEI 598
           I +F++ D     + EI
Sbjct: 593 IHVFVAEDSSHPMIKEI 609



 Score =  119 bits (297), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 114/494 (23%), Positives = 213/494 (43%), Gaps = 87/494 (17%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWT 77
           I  YSK G +  A+  FQ +   NV S+NA+++ + +  R   A +LF+++PE ++VS+ 
Sbjct: 50  ILLYSKCGRLAWARKAFQDISDPNVFSFNAIIAAYAKESRPLIAHQLFDQIPEPDLVSYN 109

Query: 78  AMICGLADAGRVCEARKLFEEMPERN----------VVSWNSMVVGLI------------ 115
            +I   AD G    A  LF  M E            V++     VGLI            
Sbjct: 110 TLISAYADCGETAPALGLFSGMREMGLDMDGFTLSAVITACCDDVGLIGQLHSVAVSSGF 169

Query: 116 ---------------RNGELNEARKVFNSM-PIKNVISWNAMIAGYVECCMMGEAIVLFE 159
                          +NG+L++A++VF  M  I++ +SWN+MI  Y +     +A+ LF+
Sbjct: 170 DSYVSVNNALLTYYGKNGDLDDAKRVFYGMGGIRDEVSWNSMIVAYGQHQEGSKALGLFQ 229

Query: 160 EMEER----NVVTWTSMI---------------------SGYCRAGEVEEGYC------- 187
           EM  R    ++ T  S++                     +G+ +   V  G         
Sbjct: 230 EMVRRGLNVDMFTLASVLTAFTCLEDLSGGLQFHGQLIKTGFHQNSHVGSGLIDLYSKCG 289

Query: 188 --------LFRRMPRKNVVSWTAMIGGFAWN-GFHKESLLLFIEMKGICDNGNNCN---- 234
                   +F  +   ++V W  M+ G++ N  F +++L  F +M+GI    N+C+    
Sbjct: 290 GGMSDCRKVFEEITEPDLVLWNTMVSGYSQNEEFLEDALECFRQMQGIGYRPNDCSFVCV 349

Query: 235 VQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPD 294
           + +C+++ +     G+   +  L   +P        ++I  Y   G + +A  LF  M +
Sbjct: 350 ISACSNLSSP--SQGKQIHSLALKSDIPSNRISVDNALIAMYSKCGNLQDARRLFDRMAE 407

Query: 295 RDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLG-RQ 353
            + V+  +MI+G  Q+ + +E+ +LF  M    + P + TF  +  A   T  ++ G   
Sbjct: 408 HNTVSLNSMIAGYAQHGIEMESLHLFQWMLERQIAPTSITFISVLSACAHTGRVEEGWNY 467

Query: 354 IHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNM-VSRDLVSWNSMVMGFSHHG 412
            + +  K   E +    +C+I +  + G +  A N+ + M  +   + W S++     HG
Sbjct: 468 FNMMKEKFNIEPEAEHYSCMIDLLGRAGKLSEAENLIARMPFNPGSIGWASLLGACRTHG 527

Query: 413 LANETLKVFESMLE 426
                +K    +L+
Sbjct: 528 NIELAVKAANQVLQ 541



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 103/404 (25%), Positives = 178/404 (44%), Gaps = 61/404 (15%)

Query: 108 NSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVV 167
           N  ++   + G L  ARK F  +   NV S+NA+IA Y +      A  LF+++ E ++V
Sbjct: 47  NHFILLYSKCGRLAWARKAFQDISDPNVFSFNAIIAAYAKESRPLIAHQLFDQIPEPDLV 106

Query: 168 TWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLL--------L 219
           ++ ++IS Y   GE      LF  M             G   +GF   +++        L
Sbjct: 107 SYNTLISAYADCGETAPALGLFSGMREM----------GLDMDGFTLSAVITACCDDVGL 156

Query: 220 FIEMKGIC-DNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTV-PVRDEISWTSMIDGYL 277
             ++  +   +G +  V   N+++  Y + G L++A+ +F  +  +RDE+SW SMI  Y 
Sbjct: 157 IGQLHSVAVSSGFDSYVSVNNALLTYYGKNGDLDDAKRVFYGMGGIRDEVSWNSMIVAYG 216

Query: 278 SVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSV 337
              + S A  LF  M  R            +  ++F  A+ L               F+ 
Sbjct: 217 QHQEGSKALGLFQEMVRRG-----------LNVDMFTLASVL-------------TAFTC 252

Query: 338 LFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKC-GVIDNAYNIFSNMVSR 396
           L   +G       G Q H  L+KT    +  + + LI +Y+KC G + +   +F  +   
Sbjct: 253 LEDLSG-------GLQFHGQLIKTGFHQNSHVGSGLIDLYSKCGGGMSDCRKVFEEITEP 305

Query: 397 DLVSWNSMVMGFSHH-GLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWEL 455
           DLV WN+MV G+S +     + L+ F  M   G  PN  +F+ ++SACS+    S+G ++
Sbjct: 306 DLVLWNTMVSGYSQNEEFLEDALECFRQMQGIGYRPNDCSFVCVISACSNLSSPSQGKQI 365

Query: 456 FNAMFDVYKIQPGPEHYVSMINLL----GRAGKIKEAEEFVLRL 495
            +           P + +S+ N L     + G +++A     R+
Sbjct: 366 HSLALK----SDIPSNRISVDNALIAMYSKCGNLQDARRLFDRM 405



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 53/182 (29%), Positives = 89/182 (48%), Gaps = 17/182 (9%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNV---- 73
           I  YSK G + +A+ LF  M + N VS N+M++G+ Q+G   E+  LF+ M ER +    
Sbjct: 386 IAMYSKCGNLQDARRLFDRMAEHNTVSLNSMIAGYAQHGIEMESLHLFQWMLERQIAPTS 445

Query: 74  VSWTAMICGLADAGRVCEARKLFEEMPERNVVS-----WNSMVVGLIRNGELNEARKVFN 128
           +++ +++   A  GRV E    F  M E+  +      ++ M+  L R G+L+EA  +  
Sbjct: 446 ITFISVLSACAHTGRVEEGWNYFNMMKEKFNIEPEAEHYSCMIDLLGRAGKLSEAENLIA 505

Query: 129 SMPIK-NVISWNAMIA-----GYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEV 182
            MP     I W +++      G +E  +     VL  ++E  N   +  + + Y  AG  
Sbjct: 506 RMPFNPGSIGWASLLGACRTHGNIELAVKAANQVL--QLEPSNAAPYVVLSNMYASAGRW 563

Query: 183 EE 184
           EE
Sbjct: 564 EE 565



 Score = 44.7 bits (104), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 44/214 (20%), Positives = 81/214 (37%), Gaps = 44/214 (20%)

Query: 335 FSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCG-----------VI 383
           F  L     A  ++  G+ +H + +K+         N  I +Y+KCG           + 
Sbjct: 11  FRHLLKTCIAERDLSTGKSLHSLYIKSFIPPSTYFSNHFILLYSKCGRLAWARKAFQDIS 70

Query: 384 DN--------------------AYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFES 423
           D                     A+ +F  +   DLVS+N+++  ++  G     L +F  
Sbjct: 71  DPNVFSFNAIIAAYAKESRPLIAHQLFDQIPEPDLVSYNTLISAYADCGETAPALGLFSG 130

Query: 424 MLESGTHPNSVTFLGILSA-CSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLL--- 479
           M E G   +  T   +++A C   GL+ +             +  G + YVS+ N L   
Sbjct: 131 MREMGLDMDGFTLSAVITACCDDVGLIGQ--------LHSVAVSSGFDSYVSVNNALLTY 182

Query: 480 -GRAGKIKEAEEFVLRLPFEPDHRIWGALLGACG 512
            G+ G + +A+     +    D   W +++ A G
Sbjct: 183 YGKNGDLDDAKRVFYGMGGIRDEVSWNSMIVAYG 216


>gi|224143620|ref|XP_002325018.1| predicted protein [Populus trichocarpa]
 gi|222866452|gb|EEF03583.1| predicted protein [Populus trichocarpa]
          Length = 695

 Score =  299 bits (765), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 183/577 (31%), Positives = 297/577 (51%), Gaps = 48/577 (8%)

Query: 27  IDEAKAL-----FQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMIC 81
           +D+AK L       L    +   +N +L+ + ++G +S AR+LF+EM +R+  SW AM+ 
Sbjct: 38  VDQAKRLKSHMHLHLFKPNDTFIHNRLLNLYAKSGEISHARKLFDEMTQRDNFSWNAMLS 97

Query: 82  GLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAM 141
             A +G V + R +F+ MP R+ VS+N+++ G   NG    A  VF  M  + +      
Sbjct: 98  LYAKSGLVEDLRVIFDNMPSRDSVSYNTVISGFAGNGRGGPALGVFLRMQKEGLKPTEYT 157

Query: 142 IAGYVECCMMGEAIVLFEEMEER--------NVVTWTSMISGYCRAGEVEEGYCLFRRMP 193
               +  C     +   +++  R        NV    ++   Y R GE+++   LF RM 
Sbjct: 158 HVSVLNACTQLLDLRRGKQIHGRIIICNLGGNVFVCNALTDLYARCGEIDQARRLFDRMV 217

Query: 194 RKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEE 253
            +NVV+W  MI G+  N   ++ + LF EM+    N     V + +S++  YI+ G ++E
Sbjct: 218 IRNVVTWNLMISGYLKNRQPEKCIDLFHEMQ--VSNLKPDQV-TASSVLGAYIQAGYIDE 274

Query: 254 AQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELF 313
           A+ +F  +  +DE+ WT M                               I G  QN   
Sbjct: 275 ARKVFGEIREKDEVCWTIM-------------------------------IVGCAQNGKE 303

Query: 314 VEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCL 373
            +A  LF EM      P   T S +  +    A++  G+ +H          DL++ + L
Sbjct: 304 EDALLLFSEMLLENARPDGYTISSVVSSCAKLASLYHGQVVHGKAFLMGVNDDLLVSSAL 363

Query: 374 ISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNS 433
           + MY KCGV  +A+ IFS M +R++VSWNSM+ G++ +G   E L ++E+MLE    P+S
Sbjct: 364 VDMYCKCGVTRDAWTIFSTMQTRNVVSWNSMIGGYALNGQDLEALSLYENMLEENLKPDS 423

Query: 434 VTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVL 493
           VTF+G+LSAC HAGLV  G E F +M D + ++P P+HY  M+NL GR+G + +A + + 
Sbjct: 424 VTFVGVLSACVHAGLVEEGKEYFCSMSDQHGLEPTPDHYACMVNLFGRSGHMDKAVDLIS 483

Query: 494 RLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHV 553
            +  EP+  IW  +L  C   +G+ +  E AA+ L+EL+P NA  +++L N+YAA GR  
Sbjct: 484 SMSQEPNSLIWTTVLSVC-VMKGDIKHGEMAARCLIELNPFNAVPYIMLSNMYAARGRWK 542

Query: 554 EEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDK 590
           +   +R  M  K V+K    SW+  +  +  F++ D+
Sbjct: 543 DVASIRSLMKSKHVKKFSAYSWIEIDNEVHKFVADDR 579



 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 131/515 (25%), Positives = 230/515 (44%), Gaps = 87/515 (16%)

Query: 21  YSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMI 80
           Y+K G I  A+ LF  M QR+  S+NAMLS + ++G + + R +F+ MP R+ VS+  +I
Sbjct: 68  YAKSGEISHARKLFDEMTQRDNFSWNAMLSLYAKSGLVEDLRVIFDNMPSRDSVSYNTVI 127

Query: 81  CGLADAGRVCEARKLFEEMPER-------------------------------------- 102
            G A  GR   A  +F  M +                                       
Sbjct: 128 SGFAGNGRGGPALGVFLRMQKEGLKPTEYTHVSVLNACTQLLDLRRGKQIHGRIIICNLG 187

Query: 103 -NVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEM 161
            NV   N++     R GE+++AR++F+ M I+NV++WN MI+GY++     + I LF EM
Sbjct: 188 GNVFVCNALTDLYARCGEIDQARRLFDRMVIRNVVTWNLMISGYLKNRQPEKCIDLFHEM 247

Query: 162 EERNV----VTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESL 217
           +  N+    VT +S++  Y +AG ++E   +F  +  K+ V WT MI G A NG  +++L
Sbjct: 248 QVSNLKPDQVTASSVLGAYIQAGYIDEARKVFGEIREKDEVCWTIMIVGCAQNGKEEDAL 307

Query: 218 LLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDT---VPVRDEISWTS-MI 273
           LLF EM  + +N    +  + +S+++   +   L   Q +      + V D++  +S ++
Sbjct: 308 LLFSEM--LLENARP-DGYTISSVVSSCAKLASLYHGQVVHGKAFLMGVNDDLLVSSALV 364

Query: 274 DGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNA 333
           D Y   G   +A+ +F  M  R+ V+W +MI G   N   +EA  L+  M    + P + 
Sbjct: 365 DMYCKCGVTRDAWTIFSTMQTRNVVSWNSMIGGYALNGQDLEALSLYENMLEENLKPDSV 424

Query: 334 TFSVLFGAAGATANIDLGRQIHCVLMKTES-ESDLILENCLISMYAKCGVIDNAYNIFSN 392
           TF  +  A      ++ G++  C +      E       C+++++ + G +D A ++ S+
Sbjct: 425 TFVGVLSACVHAGLVEEGKEYFCSMSDQHGLEPTPDHYACMVNLFGRSGHMDKAVDLISS 484

Query: 393 MVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRG 452
           M                                     PNS+ +  +LS C   G +  G
Sbjct: 485 M----------------------------------SQEPNSLIWTTVLSVCVMKGDIKHG 510

Query: 453 WELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKE 487
                 + ++      P  Y+ + N+    G+ K+
Sbjct: 511 EMAARCLIELNPFNAVP--YIMLSNMYAARGRWKD 543


>gi|115488988|ref|NP_001066981.1| Os12g0552300 [Oryza sativa Japonica Group]
 gi|113649488|dbj|BAF30000.1| Os12g0552300 [Oryza sativa Japonica Group]
          Length = 1175

 Score =  299 bits (765), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 188/630 (29%), Positives = 310/630 (49%), Gaps = 51/630 (8%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMP----ERNV 73
           IT Y + G    A+ +F  MP R+ V++N ++SG  Q G    A  +FEEM       + 
Sbjct: 185 ITLYLRCGSFRLAERVFCDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLSPDC 244

Query: 74  VSWTAMICGLADAGRVCEARKL----FEEMPERNVVSWNSMVVGLIRNGELNEARKVFNS 129
           V+ ++++   A  G + +  +L    F+     + +   S++   ++ G++  A  +FNS
Sbjct: 245 VTISSLLAACASLGDLQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVIFNS 304

Query: 130 MPIKNVISWNAMIAGYVECCMMGEAIVLFEEME--------------------------- 162
               NV+ WN M+  + +   + ++  LF +M+                           
Sbjct: 305 SDRTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREIDLG 364

Query: 163 ------------ERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWN 210
                       E ++     +I  Y + G +E+   +   +  K+VVSWT+MI G+  +
Sbjct: 365 EQIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGYVQH 424

Query: 211 GFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGY--IRFGRLEEAQNLFDTVPVRDEIS 268
              K++L  F EM+      +N  + S  S   G   +R G L+    ++ +    D   
Sbjct: 425 ECCKDALAAFKEMQKCGIWPDNIGLASAISGCAGINAMRQG-LQIHARIYVSGYSGDVSI 483

Query: 269 WTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGV 328
           W ++++ Y   G++  A+  F  +  +D + W  ++SG  Q+ L  EA  +FM M   GV
Sbjct: 484 WNALVNLYARCGRIREAFSSFEEIEHKDEITWNGLVSGFAQSGLHEEALKVFMRMDQSGV 543

Query: 329 PPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYN 388
                TF     A+   A I  G+QIH  ++KT    +  + N LIS+Y KCG  ++A  
Sbjct: 544 KHNVFTFVSALSASANLAEIKQGKQIHARVIKTGHSFETEVGNALISLYGKCGSFEDAKM 603

Query: 389 IFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGL 448
            FS M  R+ VSWN+++   S HG   E L +F+ M + G  PN VTF+G+L+ACSH GL
Sbjct: 604 EFSEMSERNEVSWNTIITSCSQHGRGLEALDLFDQMKKEGIKPNDVTFIGVLAACSHVGL 663

Query: 449 VSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALL 508
           V  G   F +M D Y I+P P+HY  +I++ GRAG++  A++F+  +P   D  +W  LL
Sbjct: 664 VEEGLSYFKSMSDEYGIRPRPDHYACVIDIFGRAGQLDRAKKFIEEMPIAADAMVWRTLL 723

Query: 509 GACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVR 568
            AC     N E+ E AAK LLEL+P ++ ++V+L N YA + +     ++R  M  +GVR
Sbjct: 724 SACKV-HKNIEVGEFAAKHLLELEPHDSASYVLLSNAYAVTEKWANRDQVRKMMRDRGVR 782

Query: 569 KVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
           K PG SW+     +  F  GD++     +I
Sbjct: 783 KEPGRSWIEVKNVVHAFFVGDRLHPLAEQI 812



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 145/578 (25%), Positives = 251/578 (43%), Gaps = 122/578 (21%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEM------PER 71
           I  YSK G +  A+ +F+ +  R+ VS+ AMLSG+ QNG   EA  L+ +M      P  
Sbjct: 84  IDLYSKNGLVLPARRVFEELSARDNVSWVAMLSGYAQNGLGEEALGLYRQMHRAGVVPTP 143

Query: 72  NVVSWTAMICGLAD---AGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFN 128
            V+S     C  A+    GR+  A+  ++      +   N+++   +R G    A +VF 
Sbjct: 144 YVLSSVLSSCTKAELFAQGRLIHAQG-YKHGFCSEIFVGNAVITLYLRCGSFRLAERVFC 202

Query: 129 SMPIKNVISWNAMIAGYVECCMMGEAIVLFEEME----ERNVVTWTSMISG--------- 175
            MP ++ +++N +I+G+ +C     A+ +FEEM+      + VT +S+++          
Sbjct: 203 DMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLSPDCVTISSLLAACASLGDLQK 262

Query: 176 --------------------------YCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAW 209
                                     Y + G+VE    +F    R NVV W  M+  F  
Sbjct: 263 GTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVIFNSSDRTNVVLWNLMLVAFGQ 322

Query: 210 NGFHKESLLLFIEMKGICDNGNN----CNVQSCNS------------------------- 240
                +S  LF +M+      N     C +++C                           
Sbjct: 323 INDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREIDLGEQIHSLSVKTGFESDMYV 382

Query: 241 ---MINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDA 297
              +I+ Y ++G LE+A+ + + +  +D +SWTSMI GY                     
Sbjct: 383 SGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGY--------------------- 421

Query: 298 VAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATF-SVLFGAAGATANIDLGRQIHC 356
                     VQ+E   +A   F EM+  G+ P N    S + G AG  A +  G QIH 
Sbjct: 422 ----------VQHECCKDALAAFKEMQKCGIWPDNIGLASAISGCAGINA-MRQGLQIHA 470

Query: 357 VLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANE 416
            +  +    D+ + N L+++YA+CG I  A++ F  +  +D ++WN +V GF+  GL  E
Sbjct: 471 RIYVSGYSGDVSIWNALVNLYARCGRIREAFSSFEEIEHKDEITWNGLVSGFAQSGLHEE 530

Query: 417 TLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDV---YKIQPGPEHYV 473
            LKVF  M +SG   N  TF+  LSA ++   + +G ++   +      ++ + G     
Sbjct: 531 ALKVFMRMDQSGVKHNVFTFVSALSASANLAEIKQGKQIHARVIKTGHSFETEVGN---- 586

Query: 474 SMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGAC 511
           ++I+L G+ G  ++A+     +  E +   W  ++ +C
Sbjct: 587 ALISLYGKCGSFEDAKMEFSEMS-ERNEVSWNTIITSC 623



 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 94/345 (27%), Positives = 159/345 (46%), Gaps = 13/345 (3%)

Query: 172 MISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMK--GICDN 229
           +I  Y + G V     +F  +  ++ VSW AM+ G+A NG  +E+L L+ +M   G+   
Sbjct: 83  LIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSGYAQNGLGEEALGLYRQMHRAGVVPT 142

Query: 230 GNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLF 289
               +    +         GRL  AQ  +      +     ++I  YL  G    A  +F
Sbjct: 143 PYVLSSVLSSCTKAELFAQGRLIHAQG-YKHGFCSEIFVGNAVITLYLRCGSFRLAERVF 201

Query: 290 HNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANID 349
            +MP RD V +  +ISG  Q      A  +F EM+  G+ P   T S L  A  +  ++ 
Sbjct: 202 CDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLSPDCVTISSLLAACASLGDLQ 261

Query: 350 LGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFS 409
            G Q+H  L K    SD I+E  L+ +Y KCG ++ A  IF++    ++V WN M++ F 
Sbjct: 262 KGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVIFNSSDRTNVVLWNLMLVAFG 321

Query: 410 HHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGP 469
                 ++ ++F  M  +G  PN  T+  IL  C+    +  G ++ +       ++ G 
Sbjct: 322 QINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREIDLGEQIHS-----LSVKTGF 376

Query: 470 EH--YVS--MINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGA 510
           E   YVS  +I++  + G +++A   VL +  E D   W +++  
Sbjct: 377 ESDMYVSGVLIDMYSKYGWLEKARR-VLEMLKEKDVVSWTSMIAG 420



 Score = 68.9 bits (167), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 66/238 (27%), Positives = 107/238 (44%), Gaps = 12/238 (5%)

Query: 292 MPDRDAVAWTAMISGLVQNELFVEATYLFME-MRAHG-VPPLNATFSVLFGAAGATANID 349
           M  R A +    ++G + +E   +   LF +  R HG + PL+     L    G      
Sbjct: 1   MTRRGAASLGRTLAGFLAHEDPAKVLSLFADKARQHGGLGPLDFA-CALRACRGNGRRWQ 59

Query: 350 LGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFS 409
           +  +IH   +        I+ N LI +Y+K G++  A  +F  + +RD VSW +M+ G++
Sbjct: 60  VVPEIHAKAVTRGLGKYRIVGNLLIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSGYA 119

Query: 410 HHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGP 469
            +GL  E L ++  M  +G  P       +LS+C+ A L ++G  L +A    YK     
Sbjct: 120 QNGLGEEALGLYRQMHRAGVVPTPYVLSSVLSSCTKAELFAQG-RLIHA--QGYKHGFCS 176

Query: 470 EHYV--SMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGA---CGFCEGNAEIAE 522
           E +V  ++I L  R G  + AE     +P   D   +  L+     CG  E   EI E
Sbjct: 177 EIFVGNAVITLYLRCGSFRLAERVFCDMPHR-DTVTFNTLISGHAQCGHGEHALEIFE 233


>gi|359488035|ref|XP_003633690.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14820-like [Vitis vinifera]
          Length = 731

 Score =  299 bits (765), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 167/472 (35%), Positives = 256/472 (54%), Gaps = 10/472 (2%)

Query: 133 KNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRM 192
           ++V   NA++  Y EC  +  A ++F++M ER+VV+W++MI    R  E +    L R M
Sbjct: 157 RDVFVGNALMLMYGECACVEYARLVFDKMMERDVVSWSTMIRSLSRNKEFDMALELIREM 216

Query: 193 P----RKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNN--CNVQSCNSMINGYI 246
                R + V+  +M+  FA     +    +      +  N NN    V +  ++++ Y 
Sbjct: 217 NFMQVRPSEVAMVSMVNLFADTANMRMGKAMHAY---VIRNSNNEHMGVPTTTALLDMYA 273

Query: 247 RFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISG 306
           + G L  A+ LF+ +  +  +SWT+MI G +   ++  A  LF +  +RD + WTAM+S 
Sbjct: 274 KCGHLGLARQLFNGLTQKTVVSWTAMIAGCIRSNRLEEARALFDSTQNRDVMIWTAMLSA 333

Query: 307 LVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESD 366
             Q     +A  LF +MR  GV P   T   L         +DLG+ +H  + K   E D
Sbjct: 334 YAQANCIDQAFNLFDQMRTSGVRPTKVTIVSLLSLCAVAGALDLGKWVHSYIDKERVEVD 393

Query: 367 LILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLE 426
            IL   L+ MYAKCG I+ A  +F   +SRD+  WN+++ GF+ HG   E L +F  M  
Sbjct: 394 CILNTALVDMYAKCGDINAAGRLFIEAISRDICMWNAIITGFAMHGYGEEALDIFAEMER 453

Query: 427 SGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIK 486
            G  PN +TF+G+L ACSHAGLV+ G +LF  M   + + P  EHY  M++LLGRAG + 
Sbjct: 454 QGVKPNDITFIGLLHACSHAGLVTEGKKLFEKMVHTFGLVPQIEHYGCMVDLLGRAGLLD 513

Query: 487 EAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIY 546
           EA E +  +P +P+  +WGAL+ AC     N ++ E AA +LLE++P N   +V++ NIY
Sbjct: 514 EAHEMIKSMPIKPNTIVWGALVAACRL-HKNPQLGELAATQLLEIEPENCGYNVLMSNIY 572

Query: 547 AASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
           AA+ R  +   +R  M   G++K PG S +  NG +  FL GD+   Q+  I
Sbjct: 573 AAANRWSDAAGVRKTMKTVGMKKEPGHSVIEVNGTVHEFLMGDQSHPQIRRI 624



 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 103/387 (26%), Positives = 180/387 (46%), Gaps = 17/387 (4%)

Query: 40  RNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEM 99
           R+V   NA++  + +   +  AR +F++M ER+VVSW+ MI  L+       A +L  EM
Sbjct: 157 RDVFVGNALMLMYGECACVEYARLVFDKMMERDVVSWSTMIRSLSRNKEFDMALELIREM 216

Query: 100 PERNV----VSWNSMVVGLIRNGELNEARKVFNSMPIKN-------VISWNAMIAGYVEC 148
               V    V+  SM V L  +       K  ++  I+N       V +  A++  Y +C
Sbjct: 217 NFMQVRPSEVAMVSM-VNLFADTANMRMGKAMHAYVIRNSNNEHMGVPTTTALLDMYAKC 275

Query: 149 CMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFA 208
             +G A  LF  + ++ VV+WT+MI+G  R+  +EE   LF     ++V+ WTAM+  +A
Sbjct: 276 GHLGLARQLFNGLTQKTVVSWTAMIAGCIRSNRLEEARALFDSTQNRDVMIWTAMLSAYA 335

Query: 209 WNGFHKESLLLFIEMKGICDNGNNCNVQSCNSM--INGYIRFGRLEEAQNLFDTVPVRDE 266
                 ++  LF +M+          + S  S+  + G +  G+   +    + V V D 
Sbjct: 336 QANCIDQAFNLFDQMRTSGVRPTKVTIVSLLSLCAVAGALDLGKWVHSYIDKERVEV-DC 394

Query: 267 ISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAH 326
           I  T+++D Y   G ++ A  LF     RD   W A+I+G   +    EA  +F EM   
Sbjct: 395 ILNTALVDMYAKCGDINAAGRLFIEAISRDICMWNAIITGFAMHGYGEEALDIFAEMERQ 454

Query: 327 GVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILE-NCLISMYAKCGVIDN 385
           GV P + TF  L  A      +  G+++   ++ T      I    C++ +  + G++D 
Sbjct: 455 GVKPNDITFIGLLHACSHAGLVTEGKKLFEKMVHTFGLVPQIEHYGCMVDLLGRAGLLDE 514

Query: 386 AYNIFSNM-VSRDLVSWNSMVMGFSHH 411
           A+ +  +M +  + + W ++V     H
Sbjct: 515 AHEMIKSMPIKPNTIVWGALVAACRLH 541



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 84/324 (25%), Positives = 152/324 (46%), Gaps = 27/324 (8%)

Query: 42  VVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPE 101
           V +  A+L  + + G L  AR+LF  + ++ VVSWTAMI G   + R+ EAR LF+    
Sbjct: 262 VPTTTALLDMYAKCGHLGLARQLFNGLTQKTVVSWTAMIAGCIRSNRLEEARALFDSTQN 321

Query: 102 RNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVL---- 157
           R+V+ W +M+    +   +++A  +F+ M    V      I   +  C +  A+ L    
Sbjct: 322 RDVMIWTAMLSAYAQANCIDQAFNLFDQMRTSGVRPTKVTIVSLLSLCAVAGALDLGKWV 381

Query: 158 ----FEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFH 213
                +E  E + +  T+++  Y + G++     LF     +++  W A+I GFA +G+ 
Sbjct: 382 HSYIDKERVEVDCILNTALVDMYAKCGDINAAGRLFIEAISRDICMWNAIITGFAMHGYG 441

Query: 214 KESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFD----TVPVRDEIS- 268
           +E+L +F EM+     G   N  +   +++     G + E + LF+    T  +  +I  
Sbjct: 442 EEALDIFAEME---RQGVKPNDITFIGLLHACSHAGLVTEGKKLFEKMVHTFGLVPQIEH 498

Query: 269 WTSMIDGYLSVGQVSNAYYLFHNMPDR-DAVAWTAMISG--LVQNELFVE--ATYLFMEM 323
           +  M+D     G +  A+ +  +MP + + + W A+++   L +N    E  AT L    
Sbjct: 499 YGCMVDLLGRAGLLDEAHEMIKSMPIKPNTIVWGALVAACRLHKNPQLGELAATQLL--- 555

Query: 324 RAHGVPPLNATFSVLFGAAGATAN 347
               + P N  ++VL     A AN
Sbjct: 556 ---EIEPENCGYNVLMSNIYAAAN 576



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 74/272 (27%), Positives = 136/272 (50%), Gaps = 15/272 (5%)

Query: 15  TSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVV 74
           T+ +  Y+K G +  A+ LF  + Q+ VVS+ AM++G +++ RL EAR LF+    R+V+
Sbjct: 266 TALLDMYAKCGHLGLARQLFNGLTQKTVVSWTAMIAGCIRSNRLEEARALFDSTQNRDVM 325

Query: 75  SWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIR----NGELNEARKVFNSM 130
            WTAM+   A A  + +A  LF++M    V      +V L+      G L+  + V + +
Sbjct: 326 IWTAMLSAYAQANCIDQAFNLFDQMRTSGVRPTKVTIVSLLSLCAVAGALDLGKWVHSYI 385

Query: 131 PIKNV----ISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGY 186
             + V    I   A++  Y +C  +  A  LF E   R++  W ++I+G+   G  EE  
Sbjct: 386 DKERVEVDCILNTALVDMYAKCGDINAAGRLFIEAISRDICMWNAIITGFAMHGYGEEAL 445

Query: 187 CLFRRMPRKNV----VSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMI 242
            +F  M R+ V    +++  ++   +  G   E   LF +M  +   G    ++    M+
Sbjct: 446 DIFAEMERQGVKPNDITFIGLLHACSHAGLVTEGKKLFEKM--VHTFGLVPQIEHYGCMV 503

Query: 243 NGYIRFGRLEEAQNLFDTVPVR-DEISWTSMI 273
           +   R G L+EA  +  ++P++ + I W +++
Sbjct: 504 DLLGRAGLLDEAHEMIKSMPIKPNTIVWGALV 535



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/145 (22%), Positives = 68/145 (46%)

Query: 297 AVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHC 356
           +  W  +I+   +      A  ++ ++R       N     +  A G  +   LG++IH 
Sbjct: 89  SAQWNFVITSYTKRNQPRNALNVYAQLRKMDFEVDNFMAPSVLKACGQVSWTQLGKEIHG 148

Query: 357 VLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANE 416
            ++K   + D+ + N L+ MY +C  ++ A  +F  M+ RD+VSW++M+   S +   + 
Sbjct: 149 FVLKKGLDRDVFVGNALMLMYGECACVEYARLVFDKMMERDVVSWSTMIRSLSRNKEFDM 208

Query: 417 TLKVFESMLESGTHPNSVTFLGILS 441
            L++   M      P+ V  + +++
Sbjct: 209 ALELIREMNFMQVRPSEVAMVSMVN 233


>gi|222631044|gb|EEE63176.1| hypothetical protein OsJ_17985 [Oryza sativa Japonica Group]
          Length = 745

 Score =  299 bits (765), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 187/593 (31%), Positives = 308/593 (51%), Gaps = 45/593 (7%)

Query: 39  QRNVVSYNAMLSGFLQNGRLSEARRLFEEMPER---NVVSWTAMICGLADAGRVCEARKL 95
           + NV   NA+++ + + G L EA  +F+E+ +R   +V+SW +++     +     A  L
Sbjct: 42  ESNVFICNALVAMYSRCGSLEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDL 101

Query: 96  FEEM-------PERNVVSWNSMVVGLIRNGELNEA--RKVFNSMPIKN-----VISWNAM 141
           F +M       P        S+V  L   G L      K  +   I+N     V   NA+
Sbjct: 102 FSKMTLIVHEKPTNERSDIISIVNILPACGSLKAVPQTKEVHGNAIRNGTFLDVFVGNAL 161

Query: 142 IAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNV---- 197
           I  Y +C +M  A+ +F  ME ++VV+W +M++GY ++G  +  + LF+ M ++N+    
Sbjct: 162 IDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYSQSGNFKAAFELFKNMRKENIPLDM 221

Query: 198 VSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEA--- 254
           V+WTA+I G++  G   E+L +F +M     +G+  N  +  S+++     G   +    
Sbjct: 222 VTWTAVIAGYSQRGCSHEALNVFRQM---IFSGSLPNCVTIISVLSACASLGAFSQGMEI 278

Query: 255 -----QNLFDTVP------VRDEISWTSMIDGYLSVGQVSNAYYLFHNMP--DRDAVAWT 301
                +N   T+         D + + ++ID Y        A  +F ++P  +R+ V WT
Sbjct: 279 HAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWT 338

Query: 302 AMISGLVQNELFVEATYLFMEM--RAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLM 359
            MI G  Q     +A  LF+EM    +GV P   T S +  A    A I +G+QIH  ++
Sbjct: 339 VMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVL 398

Query: 360 KTE--SESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANET 417
           +      S   + NCLI+MY+KCG +D A ++F +M  +  +SW SM+ G+  HG  +E 
Sbjct: 399 RHHQYDSSAYFVANCLINMYSKCGDVDTARHVFDSMSQKSAISWTSMMTGYGMHGRGSEA 458

Query: 418 LKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMIN 477
           L +F+ M ++G  P+ +TFL +L ACSH G+V +G   F++M   Y + P  EHY   I+
Sbjct: 459 LDIFDKMRKAGFVPDDITFLVVLYACSHCGMVDQGLSYFDSMSADYGLTPRAEHYAYAID 518

Query: 478 LLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAP 537
           LL R G++ +A + V  +P EP   +W ALL AC     N E+AEHA  +L+E++  N  
Sbjct: 519 LLARFGRLDKAWKTVKDMPMEPTAVVWVALLSACRV-HSNVELAEHALNKLVEMNAENDG 577

Query: 538 AHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDK 590
           ++ ++ NIYA +GR  +  ++R  M   G++K PGCSW+    G   F  GD+
Sbjct: 578 SYTLISNIYATAGRWKDVARIRHLMKKSGIKKRPGCSWVQGQKGTASFFVGDR 630



 Score =  112 bits (280), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 88/332 (26%), Positives = 148/332 (44%), Gaps = 73/332 (21%)

Query: 226 ICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVR---DEISWTSMIDGYLSVGQV 282
           IC NG   NV  CN+++  Y R G LEEA  +FD +  R   D ISW S++  ++     
Sbjct: 36  ICCNGFESNVFICNALVAMYSRCGSLEEASMIFDEITQRGIDDVISWNSIVSAHV----- 90

Query: 283 SNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAA 342
                       + + AWTA+       +LF + T +  E   +    + +  ++L  A 
Sbjct: 91  ------------KSSNAWTAL-------DLFSKMTLIVHEKPTNERSDIISIVNIL-PAC 130

Query: 343 GATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWN 402
           G+   +   +++H   ++  +  D+ + N LI  YAKCG+++NA  +F+ M  +D+VSWN
Sbjct: 131 GSLKAVPQTKEVHGNAIRNGTFLDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWN 190

Query: 403 SMV-----------------------------------MGFSHHGLANETLKVFESMLES 427
           +MV                                    G+S  G ++E L VF  M+ S
Sbjct: 191 AMVAGYSQSGNFKAAFELFKNMRKENIPLDMVTWTAVIAGYSQRGCSHEALNVFRQMIFS 250

Query: 428 GTHPNSVTFLGILSACSHAGLVSRGWE-----LFNAMFDVYKIQPGPEH----YVSMINL 478
           G+ PN VT + +LSAC+  G  S+G E     L N +  +     G +     Y ++I++
Sbjct: 251 GSLPNCVTIISVLSACASLGAFSQGMEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDM 310

Query: 479 LGRAGKIKEAEEFVLRLPFEPDHRI-WGALLG 509
             +    K A      +P E  + + W  ++G
Sbjct: 311 YSKCRSFKAARSIFDDIPLEERNVVTWTVMIG 342



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 87/313 (27%), Positives = 148/313 (47%), Gaps = 47/313 (15%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNV---- 73
           I  Y+K G ++ A  +F +M  ++VVS+NAM++G+ Q+G    A  LF+ M + N+    
Sbjct: 162 IDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYSQSGNFKAAFELFKNMRKENIPLDM 221

Query: 74  VSWTAMICGLADAGRVCEARKLFEEM----PERNVVSWNSMVVGLIRNGELNEARKVFNS 129
           V+WTA+I G +  G   EA  +F +M       N V+  S++      G  ++  ++ ++
Sbjct: 222 VTWTAVIAGYSQRGCSHEALNVFRQMIFSGSLPNCVTIISVLSACASLGAFSQGMEI-HA 280

Query: 130 MPIKN---------------VISWNAMIAGYVECCMMGEAIVLFEE--MEERNVVTWTSM 172
             +KN               ++ +NA+I  Y +C     A  +F++  +EERNVVTWT M
Sbjct: 281 YSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVM 340

Query: 173 ISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNN 232
           I G+ + G+  +   LF  M  +          G A N +    +L+          G  
Sbjct: 341 IGGHAQYGDSNDALKLFVEMISEPY--------GVAPNAYTISCILMACAHLAAIRIGKQ 392

Query: 233 CNVQ-------------SCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSV 279
            +                 N +IN Y + G ++ A+++FD++  +  ISWTSM+ GY   
Sbjct: 393 IHAYVLRHHQYDSSAYFVANCLINMYSKCGDVDTARHVFDSMSQKSAISWTSMMTGYGMH 452

Query: 280 GQVSNAYYLFHNM 292
           G+ S A  +F  M
Sbjct: 453 GRGSEALDIFDKM 465



 Score = 55.8 bits (133), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 45/181 (24%), Positives = 86/181 (47%), Gaps = 21/181 (11%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVV--- 74
           I  YSK G +D A+ +F  M Q++ +S+ +M++G+  +GR SEA  +F++M +   V   
Sbjct: 415 INMYSKCGDVDTARHVFDSMSQKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDD 474

Query: 75  -SWTAMICGLADAGRVCEARKLFEEMPERNVVS-----WNSMVVGLIRNGELNEARKVFN 128
            ++  ++   +  G V +    F+ M     ++     +   +  L R G L++A K   
Sbjct: 475 ITFLVVLYACSHCGMVDQGLSYFDSMSADYGLTPRAEHYAYAIDLLARFGRLDKAWKTVK 534

Query: 129 SMPIK-NVISWNAMIAGYVECCMMGEAIVLFE-------EMEERNVVTWTSMISGYCRAG 180
            MP++   + W A+++     C +   + L E       EM   N  ++T + + Y  AG
Sbjct: 535 DMPMEPTAVVWVALLSA----CRVHSNVELAEHALNKLVEMNAENDGSYTLISNIYATAG 590

Query: 181 E 181
            
Sbjct: 591 R 591



 Score = 48.1 bits (113), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 43/170 (25%), Positives = 72/170 (42%), Gaps = 24/170 (14%)

Query: 334 TFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNM 393
           T   +  A G   +   G   H ++     ES++ + N L++MY++CG ++ A  IF  +
Sbjct: 12  TLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMIFDEI 71

Query: 394 VSR---DLVSWNSMVMGFSHHGLANETLKVFESML----ESGTHPNS--VTFLGILSACS 444
             R   D++SWNS+V        A   L +F  M     E  T+  S  ++ + IL AC 
Sbjct: 72  TQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILPACG 131

Query: 445 HAGLVSRGWELF---------------NAMFDVYKIQPGPEHYVSMINLL 479
               V +  E+                NA+ D Y      E+ V + N++
Sbjct: 132 SLKAVPQTKEVHGNAIRNGTFLDVFVGNALIDAYAKCGLMENAVKVFNMM 181


>gi|108862806|gb|ABA99524.2| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 1176

 Score =  299 bits (765), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 188/630 (29%), Positives = 310/630 (49%), Gaps = 51/630 (8%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMP----ERNV 73
           IT Y + G    A+ +F  MP R+ V++N ++SG  Q G    A  +FEEM       + 
Sbjct: 185 ITLYLRCGSFRLAERVFCDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLSPDC 244

Query: 74  VSWTAMICGLADAGRVCEARKL----FEEMPERNVVSWNSMVVGLIRNGELNEARKVFNS 129
           V+ ++++   A  G + +  +L    F+     + +   S++   ++ G++  A  +FNS
Sbjct: 245 VTISSLLAACASLGDLQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVIFNS 304

Query: 130 MPIKNVISWNAMIAGYVECCMMGEAIVLFEEME--------------------------- 162
               NV+ WN M+  + +   + ++  LF +M+                           
Sbjct: 305 SDRTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREIDLG 364

Query: 163 ------------ERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWN 210
                       E ++     +I  Y + G +E+   +   +  K+VVSWT+MI G+  +
Sbjct: 365 EQIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGYVQH 424

Query: 211 GFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGY--IRFGRLEEAQNLFDTVPVRDEIS 268
              K++L  F EM+      +N  + S  S   G   +R G L+    ++ +    D   
Sbjct: 425 ECCKDALAAFKEMQKCGIWPDNIGLASAISGCAGINAMRQG-LQIHARIYVSGYSGDVSI 483

Query: 269 WTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGV 328
           W ++++ Y   G++  A+  F  +  +D + W  ++SG  Q+ L  EA  +FM M   GV
Sbjct: 484 WNALVNLYARCGRIREAFSSFEEIEHKDEITWNGLVSGFAQSGLHEEALKVFMRMDQSGV 543

Query: 329 PPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYN 388
                TF     A+   A I  G+QIH  ++KT    +  + N LIS+Y KCG  ++A  
Sbjct: 544 KHNVFTFVSALSASANLAEIKQGKQIHARVIKTGHSFETEVGNALISLYGKCGSFEDAKM 603

Query: 389 IFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGL 448
            FS M  R+ VSWN+++   S HG   E L +F+ M + G  PN VTF+G+L+ACSH GL
Sbjct: 604 EFSEMSERNEVSWNTIITSCSQHGRGLEALDLFDQMKKEGIKPNDVTFIGVLAACSHVGL 663

Query: 449 VSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALL 508
           V  G   F +M D Y I+P P+HY  +I++ GRAG++  A++F+  +P   D  +W  LL
Sbjct: 664 VEEGLSYFKSMSDEYGIRPRPDHYACVIDIFGRAGQLDRAKKFIEEMPIAADAMVWRTLL 723

Query: 509 GACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVR 568
            AC     N E+ E AAK LLEL+P ++ ++V+L N YA + +     ++R  M  +GVR
Sbjct: 724 SACKV-HKNIEVGEFAAKHLLELEPHDSASYVLLSNAYAVTEKWANRDQVRKMMRDRGVR 782

Query: 569 KVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
           K PG SW+     +  F  GD++     +I
Sbjct: 783 KEPGRSWIEVKNVVHAFFVGDRLHPLAEQI 812



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 145/578 (25%), Positives = 251/578 (43%), Gaps = 122/578 (21%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEM------PER 71
           I  YSK G +  A+ +F+ +  R+ VS+ AMLSG+ QNG   EA  L+ +M      P  
Sbjct: 84  IDLYSKNGLVLPARRVFEELSARDNVSWVAMLSGYAQNGLGEEALGLYRQMHRAGVVPTP 143

Query: 72  NVVSWTAMICGLAD---AGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFN 128
            V+S     C  A+    GR+  A+  ++      +   N+++   +R G    A +VF 
Sbjct: 144 YVLSSVLSSCTKAELFAQGRLIHAQG-YKHGFCSEIFVGNAVITLYLRCGSFRLAERVFC 202

Query: 129 SMPIKNVISWNAMIAGYVECCMMGEAIVLFEEME----ERNVVTWTSMISG--------- 175
            MP ++ +++N +I+G+ +C     A+ +FEEM+      + VT +S+++          
Sbjct: 203 DMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLSPDCVTISSLLAACASLGDLQK 262

Query: 176 --------------------------YCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAW 209
                                     Y + G+VE    +F    R NVV W  M+  F  
Sbjct: 263 GTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVIFNSSDRTNVVLWNLMLVAFGQ 322

Query: 210 NGFHKESLLLFIEMKGICDNGNN----CNVQSCNS------------------------- 240
                +S  LF +M+      N     C +++C                           
Sbjct: 323 INDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREIDLGEQIHSLSVKTGFESDMYV 382

Query: 241 ---MINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDA 297
              +I+ Y ++G LE+A+ + + +  +D +SWTSMI GY                     
Sbjct: 383 SGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGY--------------------- 421

Query: 298 VAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATF-SVLFGAAGATANIDLGRQIHC 356
                     VQ+E   +A   F EM+  G+ P N    S + G AG  A +  G QIH 
Sbjct: 422 ----------VQHECCKDALAAFKEMQKCGIWPDNIGLASAISGCAGINA-MRQGLQIHA 470

Query: 357 VLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANE 416
            +  +    D+ + N L+++YA+CG I  A++ F  +  +D ++WN +V GF+  GL  E
Sbjct: 471 RIYVSGYSGDVSIWNALVNLYARCGRIREAFSSFEEIEHKDEITWNGLVSGFAQSGLHEE 530

Query: 417 TLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDV---YKIQPGPEHYV 473
            LKVF  M +SG   N  TF+  LSA ++   + +G ++   +      ++ + G     
Sbjct: 531 ALKVFMRMDQSGVKHNVFTFVSALSASANLAEIKQGKQIHARVIKTGHSFETEVGN---- 586

Query: 474 SMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGAC 511
           ++I+L G+ G  ++A+     +  E +   W  ++ +C
Sbjct: 587 ALISLYGKCGSFEDAKMEFSEMS-ERNEVSWNTIITSC 623



 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 94/345 (27%), Positives = 159/345 (46%), Gaps = 13/345 (3%)

Query: 172 MISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMK--GICDN 229
           +I  Y + G V     +F  +  ++ VSW AM+ G+A NG  +E+L L+ +M   G+   
Sbjct: 83  LIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSGYAQNGLGEEALGLYRQMHRAGVVPT 142

Query: 230 GNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLF 289
               +    +         GRL  AQ  +      +     ++I  YL  G    A  +F
Sbjct: 143 PYVLSSVLSSCTKAELFAQGRLIHAQG-YKHGFCSEIFVGNAVITLYLRCGSFRLAERVF 201

Query: 290 HNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANID 349
            +MP RD V +  +ISG  Q      A  +F EM+  G+ P   T S L  A  +  ++ 
Sbjct: 202 CDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLSPDCVTISSLLAACASLGDLQ 261

Query: 350 LGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFS 409
            G Q+H  L K    SD I+E  L+ +Y KCG ++ A  IF++    ++V WN M++ F 
Sbjct: 262 KGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVIFNSSDRTNVVLWNLMLVAFG 321

Query: 410 HHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGP 469
                 ++ ++F  M  +G  PN  T+  IL  C+    +  G ++ +       ++ G 
Sbjct: 322 QINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREIDLGEQIHS-----LSVKTGF 376

Query: 470 EH--YVS--MINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGA 510
           E   YVS  +I++  + G +++A   VL +  E D   W +++  
Sbjct: 377 ESDMYVSGVLIDMYSKYGWLEKARR-VLEMLKEKDVVSWTSMIAG 420



 Score = 68.9 bits (167), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 66/238 (27%), Positives = 107/238 (44%), Gaps = 12/238 (5%)

Query: 292 MPDRDAVAWTAMISGLVQNELFVEATYLFME-MRAHG-VPPLNATFSVLFGAAGATANID 349
           M  R A +    ++G + +E   +   LF +  R HG + PL+     L    G      
Sbjct: 1   MTRRGAASLGRTLAGFLAHEDPAKVLSLFADKARQHGGLGPLDFA-CALRACRGNGRRWQ 59

Query: 350 LGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFS 409
           +  +IH   +        I+ N LI +Y+K G++  A  +F  + +RD VSW +M+ G++
Sbjct: 60  VVPEIHAKAVTRGLGKYRIVGNLLIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSGYA 119

Query: 410 HHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGP 469
            +GL  E L ++  M  +G  P       +LS+C+ A L ++G  L +A    YK     
Sbjct: 120 QNGLGEEALGLYRQMHRAGVVPTPYVLSSVLSSCTKAELFAQG-RLIHA--QGYKHGFCS 176

Query: 470 EHYV--SMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGA---CGFCEGNAEIAE 522
           E +V  ++I L  R G  + AE     +P   D   +  L+     CG  E   EI E
Sbjct: 177 EIFVGNAVITLYLRCGSFRLAERVFCDMPHR-DTVTFNTLISGHAQCGHGEHALEIFE 233


>gi|395146511|gb|AFN53666.1| hypothetical protein [Linum usitatissimum]
          Length = 850

 Score =  298 bits (764), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 182/562 (32%), Positives = 299/562 (53%), Gaps = 31/562 (5%)

Query: 50  SGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNS 109
           + F     L  AR++F+++P+ N+ SW  +I  LA +    ++  +F  M   +    N 
Sbjct: 181 AAFSSFSALDYARKVFDQIPQPNLYSWNILIRALATSSDPIQSVLVFIRMLHDSPFGPNK 240

Query: 110 MVVGLIRNGELNEAR-----KVFNSMPIK-----NVISWNAMIAGYVECCMMGEAIVLFE 159
               ++    + E R     K  + M IK     +V   N++I  Y  C  +  A ++FE
Sbjct: 241 FTFPVLIKA-VAERRCFLVGKAVHGMAIKTSFGDDVFVLNSLIHFYASCGHLDLAYLVFE 299

Query: 160 EME--ERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRK----NVVSWTAMIGGFAWNGFH 213
            +E   +++V+W SM++G+ + G  ++   LF RM  +    N V+  +++   A     
Sbjct: 300 MIEGNNKDIVSWNSMVTGFVQGGYPDKALDLFERMRNEGVHPNAVTMVSVMSACA----- 354

Query: 214 KESLLLFIEMKGICD----NGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISW 269
            +++ L +  K +CD    N    N+  CN+ I+ +++ G +E A+ LFD +  RD +SW
Sbjct: 355 -KTMNLTLGRK-VCDYIDRNEMMMNLNVCNATIDMFVKCGEVEIARGLFDNMEKRDVVSW 412

Query: 270 TSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMR--AHG 327
           T++IDGY  + +   A  +F +MP +D  AW  +ISG  Q+    EA  +F E++    G
Sbjct: 413 TTIIDGYAKMSEHGIARDIFDSMPRKDIPAWNVLISGYEQSGRPKEALAIFRELQLTKSG 472

Query: 328 VPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAY 387
             P   T      A      +D+G  IH  + K   + +  L   LI MY+K G ++ A 
Sbjct: 473 ARPDQVTLLSTLSACAQLGAMDIGEWIHGYIKKERIQLNRNLATSLIDMYSKSGDVEKAI 532

Query: 388 NIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAG 447
            +F ++ ++D+  W++M+ G + HG     +++F  M E+   PNSVTF  +L ACSH+G
Sbjct: 533 EVFHSIGNKDVFVWSAMIAGLAMHGRGEAAIELFLDMQETQVKPNSVTFTNLLCACSHSG 592

Query: 448 LVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGAL 507
           LV  G  LF+ M  VY + P  +HY  M+++LGRAG ++EA +F+  +P  P   +WGAL
Sbjct: 593 LVDEGKRLFDEMERVYGVVPKTKHYSCMVDVLGRAGHLEEALKFIEGMPLAPSASVWGAL 652

Query: 508 LGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGV 567
           LGAC    GN E+AE A  RLLE++P N  A+V+L N+YA +G      +LR  M   G+
Sbjct: 653 LGACCI-HGNLELAEKACSRLLEIEPGNHGAYVLLSNLYAKTGDWEGVSELRQQMRDSGL 711

Query: 568 RKVPGCSWLMRNGGIQMFLSGD 589
           +K  GCS +  +G +  F+ GD
Sbjct: 712 KKETGCSSIEIDGTVHEFIVGD 733



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 120/510 (23%), Positives = 216/510 (42%), Gaps = 122/510 (23%)

Query: 21  YSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEM------------ 68
           +S    +D A+ +F  +PQ N+ S+N ++     +    ++  +F  M            
Sbjct: 183 FSSFSALDYARKVFDQIPQPNLYSWNILIRALATSSDPIQSVLVFIRMLHDSPFGPNKFT 242

Query: 69  --------PER--------------------NVVSWTAMICGLADAGRVCEARKLFE--E 98
                    ER                    +V    ++I   A  G +  A  +FE  E
Sbjct: 243 FPVLIKAVAERRCFLVGKAVHGMAIKTSFGDDVFVLNSLIHFYASCGHLDLAYLVFEMIE 302

Query: 99  MPERNVVSWNSMVVGLIRNGELNEARKVF----------NSMPIKNVIS----------- 137
              +++VSWNSMV G ++ G  ++A  +F          N++ + +V+S           
Sbjct: 303 GNNKDIVSWNSMVTGFVQGGYPDKALDLFERMRNEGVHPNAVTMVSVMSACAKTMNLTLG 362

Query: 138 ------------------WNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRA 179
                              NA I  +V+C  +  A  LF+ ME+R+VV+WT++I GY + 
Sbjct: 363 RKVCDYIDRNEMMMNLNVCNATIDMFVKCGEVEIARGLFDNMEKRDVVSWTTIIDGYAKM 422

Query: 180 GEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNN------- 232
            E      +F  MPRK++ +W  +I G+  +G  KE+L +F E++ +  +G         
Sbjct: 423 SEHGIARDIFDSMPRKDIPAWNVLISGYEQSGRPKEALAIFRELQ-LTKSGARPDQVTLL 481

Query: 233 CNVQSCNSM--------INGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSN 284
             + +C  +        I+GYI+  R++  +NL            TS+ID Y   G V  
Sbjct: 482 STLSACAQLGAMDIGEWIHGYIKKERIQLNRNLA-----------TSLIDMYSKSGDVEK 530

Query: 285 AYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGA 344
           A  +FH++ ++D   W+AMI+GL  +     A  LF++M+   V P + TF+ L  A   
Sbjct: 531 AIEVFHSIGNKDVFVWSAMIAGLAMHGRGEAAIELFLDMQETQVKPNSVTFTNLLCACSH 590

Query: 345 TANIDLGR-------QIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNM-VSR 396
           +  +D G+       +++ V+ KT+  S      C++ +  + G ++ A      M ++ 
Sbjct: 591 SGLVDEGKRLFDEMERVYGVVPKTKHYS------CMVDVLGRAGHLEEALKFIEGMPLAP 644

Query: 397 DLVSWNSMVMGFSHHGLANETLKVFESMLE 426
               W +++     HG      K    +LE
Sbjct: 645 SASVWGALLGACCIHGNLELAEKACSRLLE 674



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 92/378 (24%), Positives = 163/378 (43%), Gaps = 89/378 (23%)

Query: 14  LTSSITKYSKRGFIDEAKALFQLMP--QRNVVSYNAMLSGFLQNGRLSEARRLFEEMPER 71
           L S I  Y+  G +D A  +F+++    +++VS+N+M++GF+Q G   +A  LFE M   
Sbjct: 278 LNSLIHFYASCGHLDLAYLVFEMIEGNNKDIVSWNSMVTGFVQGGYPDKALDLFERMRNE 337

Query: 72  ----------NVVSWTAMICGLADAGRVCE-----------------------------A 92
                     +V+S  A    L    +VC+                             A
Sbjct: 338 GVHPNAVTMVSVMSACAKTMNLTLGRKVCDYIDRNEMMMNLNVCNATIDMFVKCGEVEIA 397

Query: 93  RKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMG 152
           R LF+ M +R+VVSW +++ G  +  E   AR +F+SMP K++ +WN +I+GY +     
Sbjct: 398 RGLFDNMEKRDVVSWTTIIDGYAKMSEHGIARDIFDSMPRKDIPAWNVLISGYEQSGRPK 457

Query: 153 EAIVLFEEME------------------------ERNVVTW-----------------TS 171
           EA+ +F E++                          ++  W                 TS
Sbjct: 458 EALAIFRELQLTKSGARPDQVTLLSTLSACAQLGAMDIGEWIHGYIKKERIQLNRNLATS 517

Query: 172 MISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGN 231
           +I  Y ++G+VE+   +F  +  K+V  W+AMI G A +G  + ++ LF++M+      N
Sbjct: 518 LIDMYSKSGDVEKAIEVFHSIGNKDVFVWSAMIAGLAMHGRGEAAIELFLDMQETQVKPN 577

Query: 232 NCNVQS--CNSMINGYIRFGR--LEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYY 287
           +    +  C    +G +  G+   +E + ++  VP      ++ M+D     G +  A  
Sbjct: 578 SVTFTNLLCACSHSGLVDEGKRLFDEMERVYGVVPKTKH--YSCMVDVLGRAGHLEEALK 635

Query: 288 LFHNMP-DRDAVAWTAMI 304
               MP    A  W A++
Sbjct: 636 FIEGMPLAPSASVWGALL 653



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 71/239 (29%), Positives = 116/239 (48%), Gaps = 24/239 (10%)

Query: 5   NHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRL 64
           N  K  VV  T+ I  Y+K      A+ +F  MP++++ ++N ++SG+ Q+GR  EA  +
Sbjct: 403 NMEKRDVVSWTTIIDGYAKMSEHGIARDIFDSMPRKDIPAWNVLISGYEQSGRPKEALAI 462

Query: 65  FEEM--------PERNVVSWTAMIC---GLADAGRVCEARKLFEEMP-ERNVVSWNSMVV 112
           F E+        P++  +  T   C   G  D G         E +   RN+ +  S++ 
Sbjct: 463 FRELQLTKSGARPDQVTLLSTLSACAQLGAMDIGEWIHGYIKKERIQLNRNLAT--SLID 520

Query: 113 GLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNV----VT 168
              ++G++ +A +VF+S+  K+V  W+AMIAG         AI LF +M+E  V    VT
Sbjct: 521 MYSKSGDVEKAIEVFHSIGNKDVFVWSAMIAGLAMHGRGEAAIELFLDMQETQVKPNSVT 580

Query: 169 WTSMISGYCRAGEVEEGYCLFRRMPR-----KNVVSWTAMIGGFAWNGFHKESLLLFIE 222
           +T+++     +G V+EG  LF  M R          ++ M+      G H E  L FIE
Sbjct: 581 FTNLLCACSHSGLVDEGKRLFDEMERVYGVVPKTKHYSCMVDVLGRAG-HLEEALKFIE 638


>gi|357480155|ref|XP_003610363.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355511418|gb|AES92560.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 734

 Score =  298 bits (764), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 183/565 (32%), Positives = 298/565 (52%), Gaps = 43/565 (7%)

Query: 46  NAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPE---- 101
           +++L+ + + G + +AR+LF+ MPERN VSW  MI G A +    +A ++FE M      
Sbjct: 157 SSLLNMYCKTGFVFDARKLFDRMPERNTVSWATMISGYASSDIADKAVEVFELMRREEEI 216

Query: 102 RNVVSWNSMVVGLIRNGELNEARKVFNSMPIKN-----VISWNAMIAGYVECCMMGEAIV 156
           +N  +  S++  L  +  +   R+V +S+ IKN     V   NA++  Y +C  + +A+ 
Sbjct: 217 QNEFALTSVLSALTSDVFVYTGRQV-HSLAIKNGLLAIVSVANALVTMYAKCGSLDDAVR 275

Query: 157 LFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKES 216
            FE   ++N +TW++M++GY + G+ ++   LF +M    V+     + G         +
Sbjct: 276 TFEFSGDKNSITWSAMVTGYAQGGDSDKALKLFNKMHSSGVLPSEFTLVGVINACSDLCA 335

Query: 217 LLLFIEMKGICDN-GNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDG 275
           ++   +M       G    +   +++++ Y + G L +A+  F+ V   D + WTS+I G
Sbjct: 336 VVEGKQMHSFAFKLGFGLQLYVLSAVVDMYAKCGSLADARKGFECVQQPDVVLWTSIITG 395

Query: 276 YLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATF 335
           Y                               VQN  +     L+ +M+   V P   T 
Sbjct: 396 Y-------------------------------VQNGDYEGGLNLYGKMQMERVIPNELTM 424

Query: 336 SVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVS 395
           + +  A  + A +D G+Q+H  ++K   + ++ + + L +MY KCG +D+ Y IF  M S
Sbjct: 425 ASVLRACSSLAALDQGKQMHARIIKYGFKLEVPIGSALSAMYTKCGSLDDGYLIFWRMPS 484

Query: 396 RDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWEL 455
           RD++SWN+M+ G S +G  N+ L++FE ML  G  P+ VTF+ +LSACSH GLV RGWE 
Sbjct: 485 RDVISWNAMISGLSQNGHGNKALELFEKMLLEGIKPDPVTFVNLLSACSHMGLVDRGWEY 544

Query: 456 FNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCE 515
           F  MFD + I P  EHY  M+++L RAGK+ EA+EF+     +    +W  LLGAC    
Sbjct: 545 FKMMFDEFNIAPMVEHYACMVDILSRAGKLNEAKEFIESATVDHGLCLWRILLGACK-NH 603

Query: 516 GNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSW 575
            N E+  +A ++L+EL    + A+V+L +IY A G      ++R  M  +GV K PGCSW
Sbjct: 604 RNYELGVYAGEKLVELGSPESSAYVLLSSIYTALGDRENVERVRRIMKARGVNKEPGCSW 663

Query: 576 LMRNGGIQMFLSGDKIPAQVAEILL 600
           +   G + +F+ GD    QV EI L
Sbjct: 664 IELKGLVHVFVVGDNQHPQVDEIRL 688



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 120/489 (24%), Positives = 217/489 (44%), Gaps = 82/489 (16%)

Query: 15  TSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPE---- 70
           +S +  Y K GF+ +A+ LF  MP+RN VS+  M+SG+  +    +A  +FE M      
Sbjct: 157 SSLLNMYCKTGFVFDARKLFDRMPERNTVSWATMISGYASSDIADKAVEVFELMRREEEI 216

Query: 71  RNVVSWTAMICGL-----------------------------------ADAGRVCEARKL 95
           +N  + T+++  L                                   A  G + +A + 
Sbjct: 217 QNEFALTSVLSALTSDVFVYTGRQVHSLAIKNGLLAIVSVANALVTMYAKCGSLDDAVRT 276

Query: 96  FEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAI 155
           FE   ++N ++W++MV G  + G+ ++A K+FN M    V+     + G +  C    A+
Sbjct: 277 FEFSGDKNSITWSAMVTGYAQGGDSDKALKLFNKMHSSGVLPSEFTLVGVINACSDLCAV 336

Query: 156 VLFEEMEE--------RNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGF 207
           V  ++M            +   ++++  Y + G + +    F  + + +VV WT++I G+
Sbjct: 337 VEGKQMHSFAFKLGFGLQLYVLSAVVDMYAKCGSLADARKGFECVQQPDVVLWTSIITGY 396

Query: 208 AWNGFHKESLLLF--IEMKGICDNGNNCN--VQSCNS---------MINGYIRFG-RLEE 253
             NG ++  L L+  ++M+ +  N       +++C+S         M    I++G +LE 
Sbjct: 397 VQNGDYEGGLNLYGKMQMERVIPNELTMASVLRACSSLAALDQGKQMHARIIKYGFKLE- 455

Query: 254 AQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELF 313
                  VP+   +S       Y   G + + Y +F  MP RD ++W AMISGL QN   
Sbjct: 456 -------VPIGSALSAM-----YTKCGSLDDGYLIFWRMPSRDVISWNAMISGLSQNGHG 503

Query: 314 VEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILEN-- 371
            +A  LF +M   G+ P   TF  L  A      +D G + +  +M  E     ++E+  
Sbjct: 504 NKALELFEKMLLEGIKPDPVTFVNLLSACSHMGLVDRGWE-YFKMMFDEFNIAPMVEHYA 562

Query: 372 CLISMYAKCGVIDNAYN-IFSNMVSRDLVSWNSMVMGFSHHGLANETLKVF--ESMLESG 428
           C++ + ++ G ++ A   I S  V   L  W  ++    +H   N  L V+  E ++E G
Sbjct: 563 CMVDILSRAGKLNEAKEFIESATVDHGLCLWRILLGACKNH--RNYELGVYAGEKLVELG 620

Query: 429 THPNSVTFL 437
           +  +S   L
Sbjct: 621 SPESSAYVL 629



 Score =  122 bits (305), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 91/357 (25%), Positives = 167/357 (46%), Gaps = 43/357 (12%)

Query: 176 YCRAGEVEEGYCLFRRMPR--KNVVSWTAMIGGFAWNGFHKE---SLLLFIEMKGICDNG 230
           Y +   +     LF  +    K+ VSW ++I  F+ N        ++ LF  M       
Sbjct: 56  YAKTNHLSHALTLFDSINDNDKDDVSWNSLINAFSQNHSSSSSSFAISLFRRM------- 108

Query: 231 NNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVR-------------DEISWTSMIDGYL 277
               +++ N + N +   G    A NL D V  +             D    +S+++ Y 
Sbjct: 109 ----MRANNVIPNAHTLAGVFSAASNLSDVVAGKQAHSVAVKTGCSGDVYVGSSLLNMYC 164

Query: 278 SVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSV 337
             G V +A  LF  MP+R+ V+W  MISG   +++  +A  +F  MR           + 
Sbjct: 165 KTGFVFDARKLFDRMPERNTVSWATMISGYASSDIADKAVEVFELMRREEEIQNEFALTS 224

Query: 338 LFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRD 397
           +  A  +   +  GRQ+H + +K    + + + N L++MYAKCG +D+A   F     ++
Sbjct: 225 VLSALTSDVFVYTGRQVHSLAIKNGLLAIVSVANALVTMYAKCGSLDDAVRTFEFSGDKN 284

Query: 398 LVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFN 457
            ++W++MV G++  G +++ LK+F  M  SG  P+  T +G+++ACS    V  G ++ +
Sbjct: 285 SITWSAMVTGYAQGGDSDKALKLFNKMHSSGVLPSEFTLVGVINACSDLCAVVEGKQMHS 344

Query: 458 AMFDVYKIQPGPEHYV--SMINLLGRAGKIKEAEEFVLRLPFE----PDHRIWGALL 508
             F   K+  G + YV  +++++  + G + +A     R  FE    PD  +W +++
Sbjct: 345 FAF---KLGFGLQLYVLSAVVDMYAKCGSLADA-----RKGFECVQQPDVVLWTSII 393



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 120/481 (24%), Positives = 206/481 (42%), Gaps = 58/481 (12%)

Query: 84  ADAGRVCEARKLFEEMPE--RNVVSWNSMVVGLIRNGELNE---ARKVFNSMPIKNVISW 138
           A    +  A  LF+ + +  ++ VSWNS++    +N   +    A  +F  M   N +  
Sbjct: 57  AKTNHLSHALTLFDSINDNDKDDVSWNSLINAFSQNHSSSSSSFAISLFRRMMRANNVIP 116

Query: 139 NA-MIAGYVECCMMGEAIVLFEEMEERNVVTW--------TSMISGYCRAGEVEEGYCLF 189
           NA  +AG          +V  ++     V T         +S+++ YC+ G V +   LF
Sbjct: 117 NAHTLAGVFSAASNLSDVVAGKQAHSVAVKTGCSGDVYVGSSLLNMYCKTGFVFDARKLF 176

Query: 190 RRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMING--YIR 247
            RMP +N VSW  MI G+A +    +++ +F  M+   +  N   + S  S +    ++ 
Sbjct: 177 DRMPERNTVSWATMISGYASSDIADKAVEVFELMRREEEIQNEFALTSVLSALTSDVFVY 236

Query: 248 FGR----LEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAM 303
            GR    L     L   V V +     +++  Y   G + +A   F    D++++ W+AM
Sbjct: 237 TGRQVHSLAIKNGLLAIVSVAN-----ALVTMYAKCGSLDDAVRTFEFSGDKNSITWSAM 291

Query: 304 ISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTES 363
           ++G  Q     +A  LF +M + GV P   T   +  A      +  G+Q+H    K   
Sbjct: 292 VTGYAQGGDSDKALKLFNKMHSSGVLPSEFTLVGVINACSDLCAVVEGKQMHSFAFKLGF 351

Query: 364 ESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFES 423
              L + + ++ MYAKCG + +A   F  +   D+V W S++ G+  +G     L ++  
Sbjct: 352 GLQLYVLSAVVDMYAKCGSLADARKGFECVQQPDVVLWTSIITGYVQNGDYEGGLNLYGK 411

Query: 424 MLESGTHPNSVTFLGILSACS-----------HAGLVSRGWEL-------FNAMF----- 460
           M      PN +T   +L ACS           HA ++  G++L        +AM+     
Sbjct: 412 MQMERVIPNELTMASVLRACSSLAALDQGKQMHARIIKYGFKLEVPIGSALSAMYTKCGS 471

Query: 461 --DVYKI---QPGPE--HYVSMINLLGRAGKIKEAEEFVLRLPFE---PDHRIWGALLGA 510
             D Y I    P  +   + +MI+ L + G   +A E   ++  E   PD   +  LL A
Sbjct: 472 LDDGYLIFWRMPSRDVISWNAMISGLSQNGHGNKALELFEKMLLEGIKPDPVTFVNLLSA 531

Query: 511 C 511
           C
Sbjct: 532 C 532



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 61/241 (25%), Positives = 114/241 (47%), Gaps = 27/241 (11%)

Query: 347 NIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFS--NMVSRDLVSWNSM 404
           NI  GR +H  ++KT S S + + N  +++YAK   + +A  +F   N   +D VSWNS+
Sbjct: 26  NILKGRTLHARILKTGSISSIYVTNTFLNLYAKTNHLSHALTLFDSINDNDKDDVSWNSL 85

Query: 405 VMGFSHHGLANE---TLKVFESMLES-GTHPNSVTFLGILSACSHAGLVSRGWELFNAMF 460
           +  FS +  ++     + +F  M+ +    PN+ T  G+ SA S+   V  G +  +   
Sbjct: 86  INAFSQNHSSSSSSFAISLFRRMMRANNVIPNAHTLAGVFSAASNLSDVVAGKQAHSV-- 143

Query: 461 DVYKIQPGPEHYV--SMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNA 518
              K     + YV  S++N+  + G + +A +   R+P E +   W  ++   G+   ++
Sbjct: 144 -AVKTGCSGDVYVGSSLLNMYCKTGFVFDARKLFDRMP-ERNTVSWATMIS--GY--ASS 197

Query: 519 EIAEHAA------KRLLELD---PLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRK 569
           +IA+ A       +R  E+     L +    +  +++  +GR V  H L +  GL  +  
Sbjct: 198 DIADKAVEVFELMRREEEIQNEFALTSVLSALTSDVFVYTGRQV--HSLAIKNGLLAIVS 255

Query: 570 V 570
           V
Sbjct: 256 V 256


>gi|347954518|gb|AEP33759.1| organelle transcript processing 82, partial [Brassica oleracea]
          Length = 691

 Score =  298 bits (764), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 190/562 (33%), Positives = 296/562 (52%), Gaps = 31/562 (5%)

Query: 58  LSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPER----NVVSWNSMVVG 113
           L  A  +FE   E N++ W  M+ GLA +  +    +++  M       N  ++  ++  
Sbjct: 33  LPYAVSVFETXQEPNLLIWNTMLRGLASSSDLVSPLEMYVRMVSXGHVPNAYTFPFLLKS 92

Query: 114 LIRNGELNEARKVFNSMPIK-----NVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVT 168
             ++    E R++ ++  +K     +  +  ++I+ Y     + +A  +F+   +R+VV+
Sbjct: 93  CAKSKTFEEGRQI-HAQVMKLGCELDRYAHTSLISMYARNGRLEDARKVFDXSSQRDVVS 151

Query: 169 WTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGI-- 226
            T++I+GY   G+V     +F  +  ++VVSW AMI G+  N  ++E+L LF EM     
Sbjct: 152 CTALITGYASRGDVRSARKVFDXITERDVVSWNAMITGYVENCGYEEALELFKEMMRTNV 211

Query: 227 -CDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTS-------MIDGYLS 278
             D G   +V S  +  +G I  GR  E   L D     D   + S        I  Y  
Sbjct: 212 RPDEGTLVSVLSACAQ-SGSIELGR--EIHTLVD-----DHHGFGSSLKIVNAFIGLYSK 263

Query: 279 VGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVL 338
            G V  A  LF  +  +D V+W  +I G     L+ EA  LF EM   G  P + T   +
Sbjct: 264 CGDVEIASGLFEGLSCKDVVSWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSV 323

Query: 339 FGAAGATANIDLGRQIHCVLMKTES--ESDLILENCLISMYAKCGVIDNAYNIFSNMVSR 396
             A      ID+GR IH  + K      +   L   LI MYAKCG I+ A+ +F++M+ +
Sbjct: 324 LPACAHLGAIDIGRWIHVYIDKRLKGVTNGSALRTSLIDMYAKCGDIEAAHQVFNSMMHK 383

Query: 397 DLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELF 456
            L SWN+M+ GF+ HG AN    +F  M ++G  P+ +T +G+LSACSH+GL+  G  +F
Sbjct: 384 SLSSWNAMIFGFAMHGRANAAFDLFSRMRKNGIEPDDITLVGLLSACSHSGLLDLGRHIF 443

Query: 457 NAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEG 516
            ++   Y I P  EHY  MI+LLG AG  KEAEE +  +P EPD  IW +LL AC    G
Sbjct: 444 KSVTQDYNITPKLEHYGCMIDLLGHAGLFKEAEEIIHMMPMEPDGVIWCSLLKACKM-HG 502

Query: 517 NAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWL 576
           N E+AE  A++L+E++P N+ ++V+L NIYA +GR  +  ++R  +  KG++KVPGCS +
Sbjct: 503 NLELAESFAQKLMEIEPENSGSYVLLSNIYATAGRWEDVARIREVLNGKGMKKVPGCSSI 562

Query: 577 MRNGGIQMFLSGDKIPAQVAEI 598
             +  +  F+ GDK+  Q  EI
Sbjct: 563 EIDSVVHEFIIGDKLHPQSREI 584



 Score =  161 bits (408), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 117/390 (30%), Positives = 185/390 (47%), Gaps = 28/390 (7%)

Query: 44  SYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERN 103
           ++ +++S + +NGRL +AR++F+   +R+VVS TA+I G A  G V  ARK+F+ + ER+
Sbjct: 120 AHTSLISMYARNGRLEDARKVFDXSSQRDVVSCTALITGYASRGDVRSARKVFDXITERD 179

Query: 104 VVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEE 163
           VVSWN+M+ G + N    EA ++F  M   NV      +   +  C    +I L  E+  
Sbjct: 180 VVSWNAMITGYVENCGYEEALELFKEMMRTNVRPDEGTLVSVLSACAQSGSIELGREIHT 239

Query: 164 ---------RNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHK 214
                     ++    + I  Y + G+VE    LF  +  K+VVSW  +IGG+     +K
Sbjct: 240 LVDDHHGFGSSLKIVNAFIGLYSKCGDVEIASGLFEGLSCKDVVSWNTLIGGYTHMNLYK 299

Query: 215 ESLLLFIEMKGICDNGNNCNVQS----CNSMINGYIRFGRL------EEAQNLFDTVPVR 264
           E+LLLF EM    ++ N+  + S    C  +  G I  GR       +  + + +   +R
Sbjct: 300 EALLLFQEMLRSGESPNDVTMLSVLPACAHL--GAIDIGRWIHVYIDKRLKGVTNGSALR 357

Query: 265 DEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMR 324
                TS+ID Y   G +  A+ +F++M  +   +W AMI G   +     A  LF  MR
Sbjct: 358 -----TSLIDMYAKCGDIEAAHQVFNSMMHKSLSSWNAMIFGFAMHGRANAAFDLFSRMR 412

Query: 325 AHGVPPLNATFSVLFGAAGATANIDLGRQI-HCVLMKTESESDLILENCLISMYAKCGVI 383
            +G+ P + T   L  A   +  +DLGR I   V         L    C+I +    G+ 
Sbjct: 413 KNGIEPDDITLVGLLSACSHSGLLDLGRHIFKSVTQDYNITPKLEHYGCMIDLLGHAGLF 472

Query: 384 DNAYNIFSNM-VSRDLVSWNSMVMGFSHHG 412
             A  I   M +  D V W S++     HG
Sbjct: 473 KEAEEIIHMMPMEPDGVIWCSLLKACKMHG 502



 Score =  122 bits (305), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 98/379 (25%), Positives = 163/379 (43%), Gaps = 90/379 (23%)

Query: 15  TSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVV 74
           TS I+ Y++ G +++A+ +F    QR+VVS  A+++G+   G +  AR++F+ + ER+VV
Sbjct: 122 TSLISMYARNGRLEDARKVFDXSSQRDVVSCTALITGYASRGDVRSARKVFDXITERDVV 181

Query: 75  SWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLI------------------- 115
           SW AMI G  +     EA +LF+EM   NV      +V ++                   
Sbjct: 182 SWNAMITGYVENCGYEEALELFKEMMRTNVRPDEGTLVSVLSACAQSGSIELGREIHTLV 241

Query: 116 ---------------------RNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEA 154
                                + G++  A  +F  +  K+V+SWN +I GY    +  EA
Sbjct: 242 DDHHGFGSSLKIVNAFIGLYSKCGDVEIASGLFEGLSCKDVVSWNTLIGGYTHMNLYKEA 301

Query: 155 IVLFEEM----EERNVVT------------------W-------------------TSMI 173
           ++LF+EM    E  N VT                  W                   TS+I
Sbjct: 302 LLLFQEMLRSGESPNDVTMLSVLPACAHLGAIDIGRWIHVYIDKRLKGVTNGSALRTSLI 361

Query: 174 SGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNC 233
             Y + G++E  + +F  M  K++ SW AMI GFA +G    +  LF  M+    NG   
Sbjct: 362 DMYAKCGDIEAAHQVFNSMMHKSLSSWNAMIFGFAMHGRANAAFDLFSRMR---KNGIEP 418

Query: 234 NVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEIS-----WTSMIDGYLSVGQVSNAYYL 288
           +  +   +++     G L+  +++F +V     I+     +  MID     G    A  +
Sbjct: 419 DDITLVGLLSACSHSGLLDLGRHIFKSVTQDYNITPKLEHYGCMIDLLGHAGLFKEAEEI 478

Query: 289 FHNMP-DRDAVAWTAMISG 306
            H MP + D V W +++  
Sbjct: 479 IHMMPMEPDGVIWCSLLKA 497


>gi|413938666|gb|AFW73217.1| hypothetical protein ZEAMMB73_724608 [Zea mays]
          Length = 610

 Score =  298 bits (764), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 167/494 (33%), Positives = 269/494 (54%), Gaps = 15/494 (3%)

Query: 111 VVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECC---MMGEAIVLFEEMEERNVV 167
           V   +R G+L  A + F S  +K   ++N ++AGY +      + +A  LF+ +   + V
Sbjct: 19  VAAAVRRGDLAGAEEAFASTQLKTTTTYNCLLAGYAKASGLIRLADARRLFDSIPHPDTV 78

Query: 168 TWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGIC 227
           ++ +++S +   G+++    +F  MP K+V SW  M+ G + NG  +E+  +F  M    
Sbjct: 79  SYNTLLSCHFACGDIDGARRVFSTMPVKDVTSWNTMVSGLSKNGASEEAAAMFRIMPVR- 137

Query: 228 DNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVR-DEISWTSMIDGYLSVGQVSNAY 286
                 N  S N+M+      G +  A++LF   P + D I WT+M+ GY+  G V  A 
Sbjct: 138 ------NAVSWNAMVAALACSGDMGAAEDLFRNAPEKTDAILWTAMVSGYMDTGNVQKAM 191

Query: 287 YLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATF--SVLFGAAGA 344
             F  MP R+ V+W A+++G V+N    +A  +F  M    +   NA+   SVL G +  
Sbjct: 192 EFFGAMPVRNLVSWNAVVAGYVKNSRADDALRVFKTMVEDSIVQPNASTLSSVLLGCSNL 251

Query: 345 TANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSM 404
           +A +  GRQ+H   MK     ++ +   L+SMY KCG +++A  +F  M ++D+V+WN+M
Sbjct: 252 SA-LGFGRQVHQWCMKLPLSRNVTVGTSLLSMYCKCGDLNDACKVFDEMSTKDIVAWNAM 310

Query: 405 VMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYK 464
           + G++ HG   + +K+FE M + G  P+ +T L +L+AC H GL   G + F  M + YK
Sbjct: 311 ISGYAQHGGGMQAIKLFEKMKDEGVVPDWITLLAVLTACIHTGLCDFGIQCFETMQEAYK 370

Query: 465 IQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHA 524
           I+P  +HY  M++LL RAG ++ A   +  +PFEP    +G LL AC   + N E AE A
Sbjct: 371 IEPQIDHYSCMVDLLCRAGLLERAVNMIHSMPFEPHPSAYGTLLTACRVYK-NLEFAEFA 429

Query: 525 AKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQM 584
           A++L+E DP NA A+V L NIYA + +  +  ++R  M    V K PG SW+   G    
Sbjct: 430 ARKLIEQDPQNAGAYVQLANIYAVANKWADVSRVRRWMKDNAVVKTPGYSWMEIKGVRHE 489

Query: 585 FLSGDKIPAQVAEI 598
           F S D++  Q+  I
Sbjct: 490 FRSNDRLHPQLGLI 503



 Score =  191 bits (486), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 121/392 (30%), Positives = 203/392 (51%), Gaps = 19/392 (4%)

Query: 15  TSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNG---RLSEARRLFEEMPER 71
           T ++    +RG +  A+  F     +   +YN +L+G+ +     RL++ARRLF+ +P  
Sbjct: 16  TVAVAAAVRRGDLAGAEEAFASTQLKTTTTYNCLLAGYAKASGLIRLADARRLFDSIPHP 75

Query: 72  NVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMP 131
           + VS+  ++      G +  AR++F  MP ++V SWN+MV GL +NG   EA  +F  MP
Sbjct: 76  DTVSYNTLLSCHFACGDIDGARRVFSTMPVKDVTSWNTMVSGLSKNGASEEAAAMFRIMP 135

Query: 132 IKNVISWNAMIAGYVECCMMGEAIVLFEEMEER-NVVTWTSMISGYCRAGEVEEGYCLFR 190
           ++N +SWNAM+A       MG A  LF    E+ + + WT+M+SGY   G V++    F 
Sbjct: 136 VRNAVSWNAMVAALACSGDMGAAEDLFRNAPEKTDAILWTAMVSGYMDTGNVQKAMEFFG 195

Query: 191 RMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMING-----Y 245
            MP +N+VSW A++ G+  N    ++L +F  M  + D+    N  + +S++ G      
Sbjct: 196 AMPVRNLVSWNAVVAGYVKNSRADDALRVFKTM--VEDSIVQPNASTLSSVLLGCSNLSA 253

Query: 246 IRFGRLEEAQNLFDTVPV-RDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMI 304
           + FGR  +       +P+ R+    TS++  Y   G +++A  +F  M  +D VAW AMI
Sbjct: 254 LGFGR--QVHQWCMKLPLSRNVTVGTSLLSMYCKCGDLNDACKVFDEMSTKDIVAWNAMI 311

Query: 305 SGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTES- 363
           SG  Q+   ++A  LF +M+  GV P   T   +  A   T   D G  I C     E+ 
Sbjct: 312 SGYAQHGGGMQAIKLFEKMKDEGVVPDWITLLAVLTACIHTGLCDFG--IQCFETMQEAY 369

Query: 364 --ESDLILENCLISMYAKCGVIDNAYNIFSNM 393
             E  +   +C++ +  + G+++ A N+  +M
Sbjct: 370 KIEPQIDHYSCMVDLLCRAGLLERAVNMIHSM 401



 Score =  148 bits (373), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 91/302 (30%), Positives = 159/302 (52%), Gaps = 18/302 (5%)

Query: 7   PKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFE 66
           P   V    + ++  SK G  +EA A+F++MP RN VS+NAM++    +G +  A  LF 
Sbjct: 104 PVKDVTSWNTMVSGLSKNGASEEAAAMFRIMPVRNAVSWNAMVAALACSGDMGAAEDLFR 163

Query: 67  EMPER-NVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARK 125
             PE+ + + WTAM+ G  D G V +A + F  MP RN+VSWN++V G ++N   ++A +
Sbjct: 164 NAPEKTDAILWTAMVSGYMDTGNVQKAMEFFGAMPVRNLVSWNAVVAGYVKNSRADDALR 223

Query: 126 VFNSMPIKNVISWNA-MIAGYVECCMMGEAIVLFEEMEE--------RNVVTWTSMISGY 176
           VF +M   +++  NA  ++  +  C    A+    ++ +        RNV   TS++S Y
Sbjct: 224 VFKTMVEDSIVQPNASTLSSVLLGCSNLSALGFGRQVHQWCMKLPLSRNVTVGTSLLSMY 283

Query: 177 CRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQ 236
           C+ G++ +   +F  M  K++V+W AMI G+A +G   +++ LF +MK   D G   +  
Sbjct: 284 CKCGDLNDACKVFDEMSTKDIVAWNAMISGYAQHGGGMQAIKLFEKMK---DEGVVPDWI 340

Query: 237 SCNSMINGYIRFGRLEEAQNLFDTVPVRDEIS-----WTSMIDGYLSVGQVSNAYYLFHN 291
           +  +++   I  G  +     F+T+    +I      ++ M+D     G +  A  + H+
Sbjct: 341 TLLAVLTACIHTGLCDFGIQCFETMQEAYKIEPQIDHYSCMVDLLCRAGLLERAVNMIHS 400

Query: 292 MP 293
           MP
Sbjct: 401 MP 402


>gi|242062682|ref|XP_002452630.1| hypothetical protein SORBIDRAFT_04g029423 [Sorghum bicolor]
 gi|241932461|gb|EES05606.1| hypothetical protein SORBIDRAFT_04g029423 [Sorghum bicolor]
          Length = 605

 Score =  298 bits (764), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 168/510 (32%), Positives = 265/510 (51%), Gaps = 46/510 (9%)

Query: 92  ARKLFEEMPERNVVSWNSMVVGLIRN---GELNEARKVFNSMPIKNVISWNAMIAGYVEC 148
           A + F     +   ++N ++ G  +    G L +AR++F+S+P  + +S+N +++ +  C
Sbjct: 26  AEEAFASTQLKTTTTYNCLLAGYAKASGPGRLADARRLFDSIPHPDAVSYNTLLSCHFAC 85

Query: 149 CMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFA 208
             +  A  +F  M  R+V +W +M+SG  + G +EE   +FR MP +N VSW AM+   A
Sbjct: 86  GDIDGAWRVFSTMPVRDVTSWNTMVSGLSKNGAIEEAEAMFRAMPARNAVSWNAMVAARA 145

Query: 209 WNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVR-DEI 267
            +                                      G +  A+NLF   P + D I
Sbjct: 146 SS--------------------------------------GDMGAAENLFRNAPEKTDAI 167

Query: 268 SWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHG 327
            WT+M+ GY+  G V  A   F  MP R+ V+W A+++G V+N    +A  +F  M    
Sbjct: 168 LWTAMVSGYMDTGNVQKAMEYFRAMPVRNLVSWNAVVAGYVKNSRAGDALRVFKTMVEDA 227

Query: 328 V--PPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDN 385
           +  P  +   SVL G +  +A +  GRQ+H   MK      + +   L+SMY KCG +D+
Sbjct: 228 IVQPNPSTLSSVLLGCSNLSA-LGFGRQVHQWCMKLPLGRSITVGTSLLSMYCKCGDLDD 286

Query: 386 AYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSH 445
           A  +F  M ++D+V+WN+M+ G++ HG   + +K+FE M + G  P+ +T L +L+AC H
Sbjct: 287 ACKLFDEMHTKDIVAWNAMISGYAQHGGGRKAIKLFEKMKDEGVVPDWITLLAVLTACIH 346

Query: 446 AGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWG 505
            GL   G + F  M + Y I+P  +HY  M++LL RAG ++ A   +  +PFEP    +G
Sbjct: 347 TGLCDFGIQCFETMQEAYNIEPQVDHYSCMVDLLCRAGLLERAVNMIHSMPFEPHPSAYG 406

Query: 506 ALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLK 565
            LL AC   + N E AE AA++L+E DP NA A+V L NIYA + R  +  ++R  M   
Sbjct: 407 TLLTACRVYK-NLEFAEFAARKLIEQDPQNAGAYVQLANIYAVANRWDDVSRVRRWMKDN 465

Query: 566 GVRKVPGCSWLMRNGGIQMFLSGDKIPAQV 595
            V K PG SW+   G    F S D++  Q+
Sbjct: 466 AVVKTPGYSWMEIKGVRHEFRSNDRLHPQL 495



 Score =  189 bits (481), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 124/379 (32%), Positives = 198/379 (52%), Gaps = 22/379 (5%)

Query: 28  DEAKALFQLMPQRNVVSYNAMLSGFLQN---GRLSEARRLFEEMPERNVVSWTAMICGLA 84
           +EA A  QL   +   +YN +L+G+ +    GRL++ARRLF+ +P  + VS+  ++    
Sbjct: 27  EEAFASTQL---KTTTTYNCLLAGYAKASGPGRLADARRLFDSIPHPDAVSYNTLLSCHF 83

Query: 85  DAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAG 144
             G +  A ++F  MP R+V SWN+MV GL +NG + EA  +F +MP +N +SWNAM+A 
Sbjct: 84  ACGDIDGAWRVFSTMPVRDVTSWNTMVSGLSKNGAIEEAEAMFRAMPARNAVSWNAMVAA 143

Query: 145 YVECCMMGEAIVLFEEMEER-NVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAM 203
                 MG A  LF    E+ + + WT+M+SGY   G V++    FR MP +N+VSW A+
Sbjct: 144 RASSGDMGAAENLFRNAPEKTDAILWTAMVSGYMDTGNVQKAMEYFRAMPVRNLVSWNAV 203

Query: 204 IGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMING-----YIRFGRLEEAQNLF 258
           + G+  N    ++L +F  M  + D     N  + +S++ G      + FGR  +     
Sbjct: 204 VAGYVKNSRAGDALRVFKTM--VEDAIVQPNPSTLSSVLLGCSNLSALGFGR--QVHQWC 259

Query: 259 DTVPVRDEIS-WTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEAT 317
             +P+   I+  TS++  Y   G + +A  LF  M  +D VAW AMISG  Q+    +A 
Sbjct: 260 MKLPLGRSITVGTSLLSMYCKCGDLDDACKLFDEMHTKDIVAWNAMISGYAQHGGGRKAI 319

Query: 318 YLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTES---ESDLILENCLI 374
            LF +M+  GV P   T   +  A   T   D G  I C     E+   E  +   +C++
Sbjct: 320 KLFEKMKDEGVVPDWITLLAVLTACIHTGLCDFG--IQCFETMQEAYNIEPQVDHYSCMV 377

Query: 375 SMYAKCGVIDNAYNIFSNM 393
            +  + G+++ A N+  +M
Sbjct: 378 DLLCRAGLLERAVNMIHSM 396



 Score =  150 bits (378), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 99/356 (27%), Positives = 160/356 (44%), Gaps = 78/356 (21%)

Query: 14  LTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNV 73
           L +   K S  G + +A+ LF  +P  + VSYN +LS     G +  A R+F  MP R+V
Sbjct: 44  LLAGYAKASGPGRLADARRLFDSIPHPDAVSYNTLLSCHFACGDIDGAWRVFSTMPVRDV 103

Query: 74  VSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVV--------------------- 112
            SW  M+ GL+  G + EA  +F  MP RN VSWN+MV                      
Sbjct: 104 TSWNTMVSGLSKNGAIEEAEAMFRAMPARNAVSWNAMVAARASSGDMGAAENLFRNAPEK 163

Query: 113 -----------GLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEM 161
                      G +  G + +A + F +MP++N++SWNA++AGYV+    G+A+ +F+ M
Sbjct: 164 TDAILWTAMVSGYMDTGNVQKAMEYFRAMPVRNLVSWNAVVAGYVKNSRAGDALRVFKTM 223

Query: 162 EE----------------------------------------RNVVTWTSMISGYCRAGE 181
            E                                        R++   TS++S YC+ G+
Sbjct: 224 VEDAIVQPNPSTLSSVLLGCSNLSALGFGRQVHQWCMKLPLGRSITVGTSLLSMYCKCGD 283

Query: 182 VEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMK--GICDNGNNCNVQSCN 239
           +++   LF  M  K++V+W AMI G+A +G  ++++ LF +MK  G+  +          
Sbjct: 284 LDDACKLFDEMHTKDIVAWNAMISGYAQHGGGRKAIKLFEKMKDEGVVPDWITLLAVLTA 343

Query: 240 SMINGYIRFGR--LEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMP 293
            +  G   FG    E  Q  ++  P  D   ++ M+D     G +  A  + H+MP
Sbjct: 344 CIHTGLCDFGIQCFETMQEAYNIEPQVDH--YSCMVDLLCRAGLLERAVNMIHSMP 397


>gi|357510605|ref|XP_003625591.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355500606|gb|AES81809.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 887

 Score =  298 bits (764), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 190/642 (29%), Positives = 316/642 (49%), Gaps = 52/642 (8%)

Query: 3   ERNHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEAR 62
           + N+  S+++     I  Y K G + +A+ +F  M   NVVS+ +M+SG+ QNG+ ++A 
Sbjct: 187 KSNYQPSIILQ-NHMINMYGKCGSMKDARKVFDTMQLPNVVSWTSMISGYSQNGQANDAI 245

Query: 63  RLFEEMPER----NVVSWTAMICGLADAGRVCEARKLFEEMPE----RNVVSWNSMVVGL 114
            ++ +M       + +++ ++I     AG +   R+L   + +     ++ S N+++   
Sbjct: 246 IMYIQMTRSGQFPDQLTFGSVIKACYIAGDIDLGRQLHAHVIKSWFGHHLTSQNALISMY 305

Query: 115 IRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEE----------- 163
              G++  A  VF  +P K++ISW  MI GY++     EA+ LF ++             
Sbjct: 306 TNFGQIEHASNVFTRIPTKDLISWGTMITGYIQLGYRVEALYLFRDLLRQGTYQPNEFIF 365

Query: 164 -----------------------------RNVVTWTSMISGYCRAGEVEEGYCLFRRMPR 194
                                        RNV    S+   Y + G +      F ++  
Sbjct: 366 GSVFSACSSLLELEYGKQVHGMCVKFGLRRNVFAGCSLCDMYAKFGFLPSAKMAFCQIKN 425

Query: 195 KNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEA 254
            ++VSW A+I  FA NG   E++  F +M  I    ++    S        +R  +  + 
Sbjct: 426 PDIVSWNAIIAAFADNGDANEAIDFFRQMIHIGLTPDSITYISLLCTCGSPVRLNQGRQI 485

Query: 255 QNLFDTVPVRDEIS-WTSMIDGYLSVGQVSNAYYLFHNMP-DRDAVAWTAMISGLVQNEL 312
            +    +    EI+   S++  Y     + +A  +F ++  + + V+W A++S  +Q + 
Sbjct: 486 HSYIVKIGFDKEITVCNSLLTMYTKCSHLHDALNVFRDISRNANLVSWNAILSACLQKKQ 545

Query: 313 FVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENC 372
             E   L+ EM   G  P + T + L G      ++ +G Q+HC  +K+    D+ + N 
Sbjct: 546 EGETFRLYKEMHFSGNKPDSITITTLLGTCAELTSLGVGNQVHCYSIKSGLILDVSVCNG 605

Query: 373 LISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPN 432
           LI MYAKCG + +A ++F +  + D+VSW+S+++G++  GL +E L +F  M   G  PN
Sbjct: 606 LIDMYAKCGSLKHARDVFDSTQNLDIVSWSSLIVGYAQCGLGHEALNLFRIMTNLGVQPN 665

Query: 433 SVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFV 492
            VT+LG LSACSH GLV  GW L+ +M   + I P  EH+  +++LL RAG + EAE F+
Sbjct: 666 EVTYLGALSACSHIGLVEEGWRLYKSMETEHGIPPTREHFSCIVDLLARAGCLHEAETFI 725

Query: 493 LRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRH 552
            +   + D   W  LL AC     N +IAE  A  +L+LDP N+ A V+LCNI+A++G  
Sbjct: 726 QKSGLDADITAWKTLLAACK-THNNVDIAERGAGNILKLDPSNSAAMVMLCNIHASAGNW 784

Query: 553 VEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQ 594
            E  KLR  M   GV+KVPG SW+       +F S D    Q
Sbjct: 785 EEVAKLRKLMKQMGVQKVPGQSWIEVKDKFHIFFSEDSSHPQ 826



 Score =  158 bits (399), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 118/457 (25%), Positives = 216/457 (47%), Gaps = 34/457 (7%)

Query: 58  LSEARRLFEEMPERN----VVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVG 113
           L  A+++ + + + N    ++    MI      G + +ARK+F+ M   NVVSW SM+ G
Sbjct: 175 LDYAKKIHDHVLKSNYQPSIILQNHMINMYGKCGSMKDARKVFDTMQLPNVVSWTSMISG 234

Query: 114 LIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTW---- 169
             +NG+ N+A  ++  M               ++ C +   I L  ++    + +W    
Sbjct: 235 YSQNGQANDAIIMYIQMTRSGQFPDQLTFGSVIKACYIAGDIDLGRQLHAHVIKSWFGHH 294

Query: 170 ----TSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEM-- 223
                ++IS Y   G++E    +F R+P K+++SW  MI G+   G+  E+L LF ++  
Sbjct: 295 LTSQNALISMYTNFGQIEHASNVFTRIPTKDLISWGTMITGYIQLGYRVEALYLFRDLLR 354

Query: 224 KGICDNGN---NCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEI-SWTSMIDGYLSV 279
           +G              +C+S++   + +G+  +   +     +R  + +  S+ D Y   
Sbjct: 355 QGTYQPNEFIFGSVFSACSSLLE--LEYGK--QVHGMCVKFGLRRNVFAGCSLCDMYAKF 410

Query: 280 GQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLF 339
           G + +A   F  + + D V+W A+I+    N    EA   F +M   G+ P + T+  L 
Sbjct: 411 GFLPSAKMAFCQIKNPDIVSWNAIIAAFADNGDANEAIDFFRQMIHIGLTPDSITYISLL 470

Query: 340 GAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSR--D 397
              G+   ++ GRQIH  ++K   + ++ + N L++MY KC  + +A N+F + +SR  +
Sbjct: 471 CTCGSPVRLNQGRQIHSYIVKIGFDKEITVCNSLLTMYTKCSHLHDALNVFRD-ISRNAN 529

Query: 398 LVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFN 457
           LVSWN+++          ET ++++ M  SG  P+S+T   +L  C  A L S G     
Sbjct: 530 LVSWNAILSACLQKKQEGETFRLYKEMHFSGNKPDSITITTLLGTC--AELTSLG---VG 584

Query: 458 AMFDVYKIQPGPEHYVS----MINLLGRAGKIKEAEE 490
                Y I+ G    VS    +I++  + G +K A +
Sbjct: 585 NQVHCYSIKSGLILDVSVCNGLIDMYAKCGSLKHARD 621



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 80/277 (28%), Positives = 137/277 (49%), Gaps = 7/277 (2%)

Query: 239 NSMINGYIRFGRLEEAQNLFDTVPVRDE----ISWTSMIDGYLSVGQVSNAYYLFHNMPD 294
            S++     F  L+ A+ + D V   +     I    MI+ Y   G + +A  +F  M  
Sbjct: 163 TSLVLACANFRSLDYAKKIHDHVLKSNYQPSIILQNHMINMYGKCGSMKDARKVFDTMQL 222

Query: 295 RDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQI 354
            + V+WT+MISG  QN    +A  ++++M   G  P   TF  +  A     +IDLGRQ+
Sbjct: 223 PNVVSWTSMISGYSQNGQANDAIIMYIQMTRSGQFPDQLTFGSVIKACYIAGDIDLGRQL 282

Query: 355 HCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLA 414
           H  ++K+     L  +N LISMY   G I++A N+F+ + ++DL+SW +M+ G+   G  
Sbjct: 283 HAHVIKSWFGHHLTSQNALISMYTNFGQIEHASNVFTRIPTKDLISWGTMITGYIQLGYR 342

Query: 415 NETLKVFESMLESGTH-PNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYV 473
            E L +F  +L  GT+ PN   F  + SACS    +  G ++ + M   + ++       
Sbjct: 343 VEALYLFRDLLRQGTYQPNEFIFGSVFSACSSLLELEYGKQV-HGMCVKFGLRRNVFAGC 401

Query: 474 SMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGA 510
           S+ ++  + G +  A+    ++   PD   W A++ A
Sbjct: 402 SLCDMYAKFGFLPSAKMAFCQIK-NPDIVSWNAIIAA 437



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 52/180 (28%), Positives = 98/180 (54%), Gaps = 10/180 (5%)

Query: 333 ATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSN 392
           +T++ L  A     ++D  ++IH  ++K+  +  +IL+N +I+MY KCG + +A  +F  
Sbjct: 160 STYTSLVLACANFRSLDYAKKIHDHVLKSNYQPSIILQNHMINMYGKCGSMKDARKVFDT 219

Query: 393 MVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRG 452
           M   ++VSW SM+ G+S +G AN+ + ++  M  SG  P+ +TF  ++ AC  AG +  G
Sbjct: 220 MQLPNVVSWTSMISGYSQNGQANDAIIMYIQMTRSGQFPDQLTFGSVIKACYIAGDIDLG 279

Query: 453 WELFNAMFDVYKIQPGPEHYVS----MINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALL 508
            +L       + I+    H+++    +I++    G+I+ A     R+P   D   WG ++
Sbjct: 280 RQL-----HAHVIKSWFGHHLTSQNALISMYTNFGQIEHASNVFTRIP-TKDLISWGTMI 333


>gi|115463097|ref|NP_001055148.1| Os05g0305300 [Oryza sativa Japonica Group]
 gi|113578699|dbj|BAF17062.1| Os05g0305300 [Oryza sativa Japonica Group]
          Length = 852

 Score =  298 bits (764), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 187/593 (31%), Positives = 308/593 (51%), Gaps = 45/593 (7%)

Query: 39  QRNVVSYNAMLSGFLQNGRLSEARRLFEEMPER---NVVSWTAMICGLADAGRVCEARKL 95
           + NV   NA+++ + + G L EA  +F+E+ +R   +V+SW +++     +     A  L
Sbjct: 149 ESNVFICNALVAMYSRCGSLEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDL 208

Query: 96  FEEM-------PERNVVSWNSMVVGLIRNGELNEA--RKVFNSMPIKN-----VISWNAM 141
           F +M       P        S+V  L   G L      K  +   I+N     V   NA+
Sbjct: 209 FSKMTLIVHEKPTNERSDIISIVNILPACGSLKAVPQTKEVHGNAIRNGTFLDVFVGNAL 268

Query: 142 IAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNV---- 197
           I  Y +C +M  A+ +F  ME ++VV+W +M++GY ++G  +  + LF+ M ++N+    
Sbjct: 269 IDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYSQSGNFKAAFELFKNMRKENIPLDM 328

Query: 198 VSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEA--- 254
           V+WTA+I G++  G   E+L +F +M     +G+  N  +  S+++     G   +    
Sbjct: 329 VTWTAVIAGYSQRGCSHEALNVFRQM---IFSGSLPNCVTIISVLSACASLGAFSQGMEI 385

Query: 255 -----QNLFDTVP------VRDEISWTSMIDGYLSVGQVSNAYYLFHNMP--DRDAVAWT 301
                +N   T+         D + + ++ID Y        A  +F ++P  +R+ V WT
Sbjct: 386 HAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWT 445

Query: 302 AMISGLVQNELFVEATYLFMEM--RAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLM 359
            MI G  Q     +A  LF+EM    +GV P   T S +  A    A I +G+QIH  ++
Sbjct: 446 VMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVL 505

Query: 360 KTE--SESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANET 417
           +      S   + NCLI+MY+KCG +D A ++F +M  +  +SW SM+ G+  HG  +E 
Sbjct: 506 RHHQYDSSAYFVANCLINMYSKCGDVDTARHVFDSMSQKSAISWTSMMTGYGMHGRGSEA 565

Query: 418 LKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMIN 477
           L +F+ M ++G  P+ +TFL +L ACSH G+V +G   F++M   Y + P  EHY   I+
Sbjct: 566 LDIFDKMRKAGFVPDDITFLVVLYACSHCGMVDQGLSYFDSMSADYGLTPRAEHYAYAID 625

Query: 478 LLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAP 537
           LL R G++ +A + V  +P EP   +W ALL AC     N E+AEHA  +L+E++  N  
Sbjct: 626 LLARFGRLDKAWKTVKDMPMEPTAVVWVALLSACRV-HSNVELAEHALNKLVEMNAENDG 684

Query: 538 AHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDK 590
           ++ ++ NIYA +GR  +  ++R  M   G++K PGCSW+    G   F  GD+
Sbjct: 685 SYTLISNIYATAGRWKDVARIRHLMKKSGIKKRPGCSWVQGQKGTASFFVGDR 737



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 104/433 (24%), Positives = 180/433 (41%), Gaps = 100/433 (23%)

Query: 139 NAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPR---- 194
             ++A Y+ C     A+++ E +     V W  +I  + + G ++    +  RM R    
Sbjct: 55  TGVVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRAGTR 114

Query: 195 ----------KNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMING 244
                     K      +   G A++G              IC NG   NV  CN+++  
Sbjct: 115 LDHFTLPHVLKACGELPSYRCGSAFHGL-------------ICCNGFESNVFICNALVAM 161

Query: 245 YIRFGRLEEAQNLFDTVPVR---DEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWT 301
           Y R G LEEA  +FD +  R   D ISW S++  ++                 + + AWT
Sbjct: 162 YSRCGSLEEASMIFDEITQRGIDDVISWNSIVSAHV-----------------KSSNAWT 204

Query: 302 AMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKT 361
           A+       +LF + T +  E   +    + +  ++L  A G+   +   +++H   ++ 
Sbjct: 205 AL-------DLFSKMTLIVHEKPTNERSDIISIVNIL-PACGSLKAVPQTKEVHGNAIRN 256

Query: 362 ESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMV---------------- 405
            +  D+ + N LI  YAKCG+++NA  +F+ M  +D+VSWN+MV                
Sbjct: 257 GTFLDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYSQSGNFKAAFELF 316

Query: 406 -------------------MGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHA 446
                               G+S  G ++E L VF  M+ SG+ PN VT + +LSAC+  
Sbjct: 317 KNMRKENIPLDMVTWTAVIAGYSQRGCSHEALNVFRQMIFSGSLPNCVTIISVLSACASL 376

Query: 447 GLVSRGWE-----LFNAMFDVYKIQPGPEH----YVSMINLLGRAGKIKEAEEFVLRLPF 497
           G  S+G E     L N +  +     G +     Y ++I++  +    K A      +P 
Sbjct: 377 GAFSQGMEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPL 436

Query: 498 EPDHRI-WGALLG 509
           E  + + W  ++G
Sbjct: 437 EERNVVTWTVMIG 449



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 87/313 (27%), Positives = 148/313 (47%), Gaps = 47/313 (15%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNV---- 73
           I  Y+K G ++ A  +F +M  ++VVS+NAM++G+ Q+G    A  LF+ M + N+    
Sbjct: 269 IDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYSQSGNFKAAFELFKNMRKENIPLDM 328

Query: 74  VSWTAMICGLADAGRVCEARKLFEEM----PERNVVSWNSMVVGLIRNGELNEARKVFNS 129
           V+WTA+I G +  G   EA  +F +M       N V+  S++      G  ++  ++ ++
Sbjct: 329 VTWTAVIAGYSQRGCSHEALNVFRQMIFSGSLPNCVTIISVLSACASLGAFSQGMEI-HA 387

Query: 130 MPIKN---------------VISWNAMIAGYVECCMMGEAIVLFEE--MEERNVVTWTSM 172
             +KN               ++ +NA+I  Y +C     A  +F++  +EERNVVTWT M
Sbjct: 388 YSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVM 447

Query: 173 ISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNN 232
           I G+ + G+  +   LF  M  +          G A N +    +L+          G  
Sbjct: 448 IGGHAQYGDSNDALKLFVEMISEPY--------GVAPNAYTISCILMACAHLAAIRIGKQ 499

Query: 233 CNVQ-------------SCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSV 279
            +                 N +IN Y + G ++ A+++FD++  +  ISWTSM+ GY   
Sbjct: 500 IHAYVLRHHQYDSSAYFVANCLINMYSKCGDVDTARHVFDSMSQKSAISWTSMMTGYGMH 559

Query: 280 GQVSNAYYLFHNM 292
           G+ S A  +F  M
Sbjct: 560 GRGSEALDIFDKM 572



 Score = 55.5 bits (132), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 45/184 (24%), Positives = 88/184 (47%), Gaps = 21/184 (11%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVV--- 74
           I  YSK G +D A+ +F  M Q++ +S+ +M++G+  +GR SEA  +F++M +   V   
Sbjct: 522 INMYSKCGDVDTARHVFDSMSQKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDD 581

Query: 75  -SWTAMICGLADAGRVCEARKLFEEMPERNVVS-----WNSMVVGLIRNGELNEARKVFN 128
            ++  ++   +  G V +    F+ M     ++     +   +  L R G L++A K   
Sbjct: 582 ITFLVVLYACSHCGMVDQGLSYFDSMSADYGLTPRAEHYAYAIDLLARFGRLDKAWKTVK 641

Query: 129 SMPIK-NVISWNAMIAGYVECCMMGEAIVLFE-------EMEERNVVTWTSMISGYCRAG 180
            MP++   + W A+++     C +   + L E       EM   N  ++T + + Y  AG
Sbjct: 642 DMPMEPTAVVWVALLSA----CRVHSNVELAEHALNKLVEMNAENDGSYTLISNIYATAG 697

Query: 181 EVEE 184
             ++
Sbjct: 698 RWKD 701


>gi|224119336|ref|XP_002331286.1| predicted protein [Populus trichocarpa]
 gi|222873711|gb|EEF10842.1| predicted protein [Populus trichocarpa]
          Length = 897

 Score =  298 bits (764), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 186/636 (29%), Positives = 314/636 (49%), Gaps = 65/636 (10%)

Query: 11  VVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPE 70
           VV  ++ +  Y+K   +D++ ++F  +P++N VS++AM++G +QN R  E   LF+EM  
Sbjct: 216 VVTGSALLGMYAKCKRLDDSLSVFSELPEKNWVSWSAMIAGCVQNDRNVEGLELFKEMQG 275

Query: 71  ---------------------------------------RNVVSWTAMICGLADAGRVCE 91
                                                   +++  TA +   A  GR+ +
Sbjct: 276 VGVGVSQSIYASLFRSCAALSALRLGKELHSHALKSAFGSDIIVGTATLDMYAKCGRMAD 335

Query: 92  ARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAM-IAGYVECC- 149
           A+K+   MP+ ++ S+N+++VG  R+    +A K F  + +K  + ++ + ++G +  C 
Sbjct: 336 AQKVLSSMPKCSLQSYNAIIVGYARSDRGFQALKSFQ-LLLKTGLGFDEITLSGALNACA 394

Query: 150 -----MMGEAI--VLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTA 202
                + G  +  +  + +   N+    +++  Y +   + E   LF  M R++ VSW A
Sbjct: 395 SIRGDLEGRQVHGLAVKSISMSNICVANAILDMYGKCKALAEASDLFDMMERRDAVSWNA 454

Query: 203 MIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVP 262
           +I     NG  +E+L  F  M        +  ++  +      ++     +A N    + 
Sbjct: 455 IIAACEQNGNEEETLAHFASMI-------HSRMEPDDFTYGSVLKACAGRQALNTGMEIH 507

Query: 263 VR--------DEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFV 314
            R        D     +++D Y   G +  A  +      +  V+W A+ISG    +   
Sbjct: 508 TRIIKSGMGFDSFVGAALVDMYCKCGMIEKADKIHDRTEQKTMVSWNAIISGFSLLQQSE 567

Query: 315 EATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLI 374
           +A   F  M   GV P N T++ +       A + LG+QIH  ++K E +SD+ + + L+
Sbjct: 568 DAHKFFSRMLEMGVNPDNFTYAAVLDTCANLATVGLGKQIHAQIIKQELQSDVYICSTLV 627

Query: 375 SMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSV 434
            MY+KCG + ++  +F    +RD V+WN+M+ G++HHGL  E LK+FESM      PN  
Sbjct: 628 DMYSKCGNMQDSQLMFEKAPNRDFVTWNAMLCGYAHHGLGEEALKLFESMQLVNVKPNHA 687

Query: 435 TFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLR 494
           TF+ +L AC+H GLV +G   F+ M   Y + P  EHY  M+++LGR+G+I EA   V +
Sbjct: 688 TFVSVLRACAHMGLVDKGLHYFDVMLSEYGLDPQSEHYSCMVDILGRSGRIDEALNLVQK 747

Query: 495 LPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVE 554
           +PFE D  IW  LL  C    GN E+AE A + LL+LDP ++ A V+L NIYA +G    
Sbjct: 748 MPFEADAVIWRNLLSVCKI-HGNVEVAEKATRALLQLDPQDSSACVLLSNIYADAGMWGN 806

Query: 555 EHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDK 590
             ++R  M    ++K PGCSW+     +  FL GDK
Sbjct: 807 VSEMRKMMRHNKLKKEPGCSWIELKDEVHAFLVGDK 842



 Score =  190 bits (482), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 150/517 (29%), Positives = 266/517 (51%), Gaps = 32/517 (6%)

Query: 46  NAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVV 105
           N ++  +++   L  A ++F++M  R+VVS+ ++I G A  G +  ARK F EMPER+VV
Sbjct: 88  NCLMQMYIKCLYLDYACKVFDKMYLRDVVSYNSIISGYASCGEMDIARKFFYEMPERDVV 147

Query: 106 SWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIA------GYVECCMMGEAI--VL 157
           SWNS++ G ++NGE  ++  VF  M    V    A +A      G +E C MG  +  ++
Sbjct: 148 SWNSVISGFLQNGECRKSIDVFLEMGRCGVGFDRASLAVVLKACGALEECDMGVQVHGLV 207

Query: 158 FEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESL 217
            +   + +VVT ++++  Y +   +++   +F  +P KN VSW+AMI G   N  + E L
Sbjct: 208 VKFGFDCDVVTGSALLGMYAKCKRLDDSLSVFSELPEKNWVSWSAMIAGCVQNDRNVEGL 267

Query: 218 LLFIEMKGICDNGNNCNV-----QSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSM 272
            LF EM+G+   G + ++     +SC ++    +R G+ E   +   +    D I  T+ 
Sbjct: 268 ELFKEMQGV-GVGVSQSIYASLFRSCAAL--SALRLGK-ELHSHALKSAFGSDIIVGTAT 323

Query: 273 IDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLN 332
           +D Y   G++++A  +  +MP     ++ A+I G  +++   +A   F  +   G+    
Sbjct: 324 LDMYAKCGRMADAQKVLSSMPKCSLQSYNAIIVGYARSDRGFQALKSFQLLLKTGLGFDE 383

Query: 333 ATFSVLFGAAGATANI--DL-GRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNI 389
            T S   GA  A A+I  DL GRQ+H + +K+ S S++ + N ++ MY KC  +  A ++
Sbjct: 384 ITLS---GALNACASIRGDLEGRQVHGLAVKSISMSNICVANAILDMYGKCKALAEASDL 440

Query: 390 FSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLV 449
           F  M  RD VSWN+++     +G   ETL  F SM+ S   P+  T+  +L AC+    +
Sbjct: 441 FDMMERRDAVSWNAIIAACEQNGNEEETLAHFASMIHSRMEPDDFTYGSVLKACAGRQAL 500

Query: 450 SRGWELFNAMFDVYKIQPGPEHYV--SMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGAL 507
           + G E+      + K   G + +V  +++++  + G I++A++   R   +     W A+
Sbjct: 501 NTGMEIHTR---IIKSGMGFDSFVGAALVDMYCKCGMIEKADKIHDRTE-QKTMVSWNAI 556

Query: 508 LGACGFCEGNAEIAEHAAKRLLEL--DPLNAPAHVVL 542
           +      +  +E A     R+LE+  +P N     VL
Sbjct: 557 ISGFSLLQ-QSEDAHKFFSRMLEMGVNPDNFTYAAVL 592



 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 146/593 (24%), Positives = 268/593 (45%), Gaps = 67/593 (11%)

Query: 11  VVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMP- 69
           VV   S I+ Y+  G +D A+  F  MP+R+VVS+N+++SGFLQNG   ++  +F EM  
Sbjct: 115 VVSYNSIISGYASCGEMDIARKFFYEMPERDVVSWNSVISGFLQNGECRKSIDVFLEMGR 174

Query: 70  --------------------------------------ERNVVSWTAMICGLADAGRVCE 91
                                                 + +VV+ +A++   A   R+ +
Sbjct: 175 CGVGFDRASLAVVLKACGALEECDMGVQVHGLVVKFGFDCDVVTGSALLGMYAKCKRLDD 234

Query: 92  ARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMM 151
           +  +F E+PE+N VSW++M+ G ++N    E  ++F  M    V    ++ A     C  
Sbjct: 235 SLSVFSELPEKNWVSWSAMIAGCVQNDRNVEGLELFKEMQGVGVGVSQSIYASLFRSCAA 294

Query: 152 GEAIVLFEEMEER--------NVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAM 203
             A+ L +E+           +++  T+ +  Y + G + +   +   MP+ ++ S+ A+
Sbjct: 295 LSALRLGKELHSHALKSAFGSDIIVGTATLDMYAKCGRMADAQKVLSSMPKCSLQSYNAI 354

Query: 204 IGGFAWN--GFH--KESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQN--- 256
           I G+A +  GF   K   LL     G  +   +  + +C S     IR G LE  Q    
Sbjct: 355 IVGYARSDRGFQALKSFQLLLKTGLGFDEITLSGALNACAS-----IR-GDLEGRQVHGL 408

Query: 257 LFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEA 316
              ++ + +     +++D Y     ++ A  LF  M  RDAV+W A+I+   QN    E 
Sbjct: 409 AVKSISMSNICVANAILDMYGKCKALAEASDLFDMMERRDAVSWNAIIAACEQNGNEEET 468

Query: 317 TYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISM 376
              F  M    + P + T+  +  A      ++ G +IH  ++K+    D  +   L+ M
Sbjct: 469 LAHFASMIHSRMEPDDFTYGSVLKACAGRQALNTGMEIHTRIIKSGMGFDSFVGAALVDM 528

Query: 377 YAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTF 436
           Y KCG+I+ A  I      + +VSWN+++ GFS    + +  K F  MLE G +P++ T+
Sbjct: 529 YCKCGMIEKADKIHDRTEQKTMVSWNAIISGFSLLQQSEDAHKFFSRMLEMGVNPDNFTY 588

Query: 437 LGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLP 496
             +L  C++   V  G ++ +A     ++Q       +++++  + G +++++    + P
Sbjct: 589 AAVLDTCANLATVGLGKQI-HAQIIKQELQSDVYICSTLVDMYSKCGNMQDSQLMFEKAP 647

Query: 497 FEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNA-PAHVVLCNIYAA 548
              D   W A+L  CG+   +  + E A K    +  +N  P H    ++  A
Sbjct: 648 -NRDFVTWNAML--CGY--AHHGLGEEALKLFESMQLVNVKPNHATFVSVLRA 695



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 100/341 (29%), Positives = 190/341 (55%), Gaps = 28/341 (8%)

Query: 118 GELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYC 177
           G+   AR +F        +S N ++  Y++C  +  A  +F++M  R+VV++ S+ISGY 
Sbjct: 68  GKQAHARMIFCGFEPTTFVS-NCLMQMYIKCLYLDYACKVFDKMYLRDVVSYNSIISGYA 126

Query: 178 RAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNN----- 232
             GE++     F  MP ++VVSW ++I GF  NG  ++S+ +F+EM G C  G +     
Sbjct: 127 SCGEMDIARKFFYEMPERDVVSWNSVISGFLQNGECRKSIDVFLEM-GRCGVGFDRASLA 185

Query: 233 CNVQSCNSM--------INGYI-RFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVS 283
             +++C ++        ++G + +FG        FD     D ++ ++++  Y    ++ 
Sbjct: 186 VVLKACGALEECDMGVQVHGLVVKFG--------FDC----DVVTGSALLGMYAKCKRLD 233

Query: 284 NAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAG 343
           ++  +F  +P+++ V+W+AMI+G VQN+  VE   LF EM+  GV    + ++ LF +  
Sbjct: 234 DSLSVFSELPEKNWVSWSAMIAGCVQNDRNVEGLELFKEMQGVGVGVSQSIYASLFRSCA 293

Query: 344 ATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNS 403
           A + + LG+++H   +K+   SD+I+    + MYAKCG + +A  + S+M    L S+N+
Sbjct: 294 ALSALRLGKELHSHALKSAFGSDIIVGTATLDMYAKCGRMADAQKVLSSMPKCSLQSYNA 353

Query: 404 MVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACS 444
           +++G++      + LK F+ +L++G   + +T  G L+AC+
Sbjct: 354 IIVGYARSDRGFQALKSFQLLLKTGLGFDEITLSGALNACA 394



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 49/194 (25%), Positives = 89/194 (45%), Gaps = 15/194 (7%)

Query: 329 PPLNA-TFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAY 387
           PP    TFS ++       +++ G+Q H  ++    E    + NCL+ MY KC  +D A 
Sbjct: 45  PPAKIRTFSHIYQECSKQNSLNPGKQAHARMIFCGFEPTTFVSNCLMQMYIKCLYLDYAC 104

Query: 388 NIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAG 447
            +F  M  RD+VS+NS++ G++  G  +   K F  M E     + V++  ++S     G
Sbjct: 105 KVFDKMYLRDVVSYNSIISGYASCGEMDIARKFFYEMPER----DVVSWNSVISGFLQNG 160

Query: 448 LVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAE------EFVLRLPFEPDH 501
              +  ++F    ++ +   G +   S+  +L   G ++E +        V++  F+ D 
Sbjct: 161 ECRKSIDVF---LEMGRCGVGFDR-ASLAVVLKACGALEECDMGVQVHGLVVKFGFDCDV 216

Query: 502 RIWGALLGACGFCE 515
               ALLG    C+
Sbjct: 217 VTGSALLGMYAKCK 230


>gi|297797117|ref|XP_002866443.1| hypothetical protein ARALYDRAFT_919404 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297312278|gb|EFH42702.1| hypothetical protein ARALYDRAFT_919404 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 749

 Score =  298 bits (763), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 191/645 (29%), Positives = 321/645 (49%), Gaps = 60/645 (9%)

Query: 8   KSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEE 67
           KSL V L   +  YSK      A+ +F  +PQ++V S+  ++ G  +NG   +    F E
Sbjct: 95  KSLTVMLNQLVIAYSKCSDFGSARQVFDEIPQKSVFSWTVLMVGATENGFYRDGIDYFVE 154

Query: 68  M------PERNVVSWTAMICGLADA---GRVCEARKLFEEMPERNVVSWNSMVVGLI-RN 117
           +      P+   +S     C   D+   G +  A+ +      R  V  N+ ++G+  + 
Sbjct: 155 ILGCDIVPDEYALSAAIQACIGVDSIVVGEMVHAQVITRGFSSRTFV--NTSLLGMYAKL 212

Query: 118 GELNEARKVFNSMPIKNVISWNAMIAGYVE-----------CCMMGEAI----------- 155
           G + ++ KVFNS+  +N +SWNAMI+G+V              M+GE I           
Sbjct: 213 GRIGDSCKVFNSLENRNQVSWNAMISGFVSNGLYAEAYNSFLRMLGEEIRPNVACFISVS 272

Query: 156 -----------------VLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVV 198
                            + FE   + N+   T++I  + + G V E + +F        V
Sbjct: 273 KAIGQLGDVEKGRYINRIAFEIGMQSNIHVGTALIDMFAKCGCVTESWSVFVSNFSGCGV 332

Query: 199 S--WTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQN 256
           +  W AMI GF  +G  +E++LLF+ M   C N    +V +  S +N       LE  + 
Sbjct: 333 NLPWNAMISGFTISGHGEEAMLLFLRM---CQNNIKRDVYTYCSTLNSIADMRSLEYVKQ 389

Query: 257 LFDTVPVRDEISWT---SMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELF 313
           L   +     I  +   +++D Y   G++     LF    + + ++WT +++   Q+  +
Sbjct: 390 LHGMIWKSGSIGVSLCNALMDAYAKCGELDAMRKLFDTWEESNQISWTTLVTAYSQSSEW 449

Query: 314 VEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCL 373
            +A  +F +MR  G  P   TFS +  +  +  +++ G+Q+H +  KT    D  +E+ L
Sbjct: 450 EDALSVFSQMREMGFQPNQVTFSGVLASCASLCSLEYGQQVHSLTCKTGFARDKCVESVL 509

Query: 374 ISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNS 433
           I MYAKCG + +A  +F ++   D++SW +M+ G++ HG+A + L++F  M     +PNS
Sbjct: 510 IDMYAKCGSVRDAIKVFESLKDPDVISWTAMISGYAQHGMAKDALELFRKMELVLPNPNS 569

Query: 434 VTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVL 493
            TFL +L ACSH GLV  G   F+ M + Y + P  EHY  ++++LGR G++ EA +F++
Sbjct: 570 ATFLCLLFACSHGGLVDEGLRYFHLMEERYGLVPEIEHYACVVDILGRVGRLTEAWKFIM 629

Query: 494 RLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHV 553
           ++P EPD ++W  LLGAC    GN ++A+ AA+++L  +P +  A V+L N Y  +G   
Sbjct: 630 KMPIEPDEKVWSTLLGACRV-HGNIQLAKIAAQKVLSYNPDDFAALVLLSNTYREAGNIE 688

Query: 554 EEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
               +R  M  + +RK  G SW+   G I  F SGD+   Q  +I
Sbjct: 689 GGLNVRNMMKSQAMRKETGMSWICIGGKIHKFCSGDQYHPQKDDI 733



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 85/330 (25%), Positives = 166/330 (50%), Gaps = 25/330 (7%)

Query: 155 IVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHK 214
           ++ F+ +E+   V    ++  Y +  +      +F  +P+K+V SWT ++ G   NGF++
Sbjct: 87  VIKFQLIEKSLTVMLNQLVIAYSKCSDFGSARQVFDEIPQKSVFSWTVLMVGATENGFYR 146

Query: 215 ESLLLFIEMKGICD-----NGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISW 269
           + +  F+E+ G CD        +  +Q+C  + +  I  G +  AQ +      R  ++ 
Sbjct: 147 DGIDYFVEILG-CDIVPDEYALSAAIQACIGVDS--IVVGEMVHAQVITRGFSSRTFVN- 202

Query: 270 TSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVP 329
           TS++  Y  +G++ ++  +F+++ +R+ V+W AMISG V N L+ EA   F+ M    + 
Sbjct: 203 TSLLGMYAKLGRIGDSCKVFNSLENRNQVSWNAMISGFVSNGLYAEAYNSFLRMLGEEIR 262

Query: 330 PLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNI 389
           P  A F  +  A G   +++ GR I+ +  +   +S++ +   LI M+AKCG +  ++++
Sbjct: 263 PNVACFISVSKAIGQLGDVEKGRYINRIAFEIGMQSNIHVGTALIDMFAKCGCVTESWSV 322

Query: 390 FSNMVSRDLVS--WNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHA- 446
           F +  S   V+  WN+M+ GF+  G   E + +F  M ++    +  T+   L++ +   
Sbjct: 323 FVSNFSGCGVNLPWNAMISGFTISGHGEEAMLLFLRMCQNNIKRDVYTYCSTLNSIADMR 382

Query: 447 ---------GLV----SRGWELFNAMFDVY 463
                    G++    S G  L NA+ D Y
Sbjct: 383 SLEYVKQLHGMIWKSGSIGVSLCNALMDAY 412


>gi|359483750|ref|XP_002269533.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20770-like [Vitis vinifera]
          Length = 847

 Score =  298 bits (763), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 179/596 (30%), Positives = 315/596 (52%), Gaps = 28/596 (4%)

Query: 21  YSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNV----VSW 76
           Y+K   I +A   F  +P+ N VS+ AM+ G   + +++EA RLF  M    +    VS 
Sbjct: 182 YAKCRCIGDAIQAFGDVPEPNEVSFTAMMGGLADSDQVNEAFRLFRLMLRNRIHVDSVSL 241

Query: 77  TAM--IC--------GLADAGRVCEARKLFEEMP--------ERNVVSWNSMVVGLIRNG 118
           +++  +C        GL D+  V  +    +++         E ++   NS++    +NG
Sbjct: 242 SSVLGVCSRGGCGEFGLHDSNDVLSSDVHGQQVHCLTIKHGFESDLHLNNSLLDMYAKNG 301

Query: 119 ELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEME----ERNVVTWTSMIS 174
            ++ A  +F +MP  +V+SWN MIAGY +     +AI   + M+    E + +T+ +M+ 
Sbjct: 302 NMDSAEMIFVNMPEVSVVSWNVMIAGYGQKSQSSKAIEYLQRMQYHGFEPDEITYVNMLV 361

Query: 175 GYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCN 234
              ++G++E G  +F  M   ++ SW  ++ G++ N  HKE++ LF EM+    + +   
Sbjct: 362 ACIKSGDIEAGRQMFDGMSSPSLSSWNTILSGYSQNENHKEAVKLFREMQFRSVHPDRTT 421

Query: 235 VQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTS-MIDGYLSVGQVSNAYYLFHNMP 293
           +    S + G +      +   +      R +I   S +I  Y   G+V  A  +F  + 
Sbjct: 422 LAIILSSLAGMMLLEGGRQVHAVSQKAVFRTDIYLASGLIGMYSKCGKVEMAKRIFDRIA 481

Query: 294 DRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQ 353
           + D V W +M++GL  N L  EA   F +MR  G+ P   +++ +       +++  GRQ
Sbjct: 482 ELDIVCWNSMMAGLSLNSLDKEAFTFFKKMREKGMFPSQFSYATVLSCCAKLSSLSQGRQ 541

Query: 354 IHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGL 413
           +H  + +    +D  + + LI MY+KCG +D A  +F  M+ ++ V+WN M+ G++ +G 
Sbjct: 542 VHSQIAREGYMNDAFVGSALIDMYSKCGDVDAARWVFDMMLGKNTVTWNEMIHGYAQNGC 601

Query: 414 ANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYV 473
            +E + ++E M+ SG  P+ +TF+ +L+ACSH+GLV  G ++FN+M   + ++P  +HY 
Sbjct: 602 GDEAVLLYEDMIGSGEKPDGITFVAVLTACSHSGLVDTGIKIFNSMQQEHGVEPLVDHYT 661

Query: 474 SMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDP 533
            +I+ LGRAG++ EAE  + ++P + D  IW  LL +C     +  +A  AA+ L  LDP
Sbjct: 662 CIIDSLGRAGRLHEAEVLIDKMPCKYDPIIWEVLLSSCRV-YADVSLARRAAEELFHLDP 720

Query: 534 LNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGD 589
            N+  +V+L NIY++ GR  +   +R  M    V K PG SW+    G+Q F+  D
Sbjct: 721 QNSAPYVLLANIYSSLGRWDDAKAVRELMSYNQVVKDPGYSWIEHKNGMQAFMVDD 776



 Score =  203 bits (516), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 140/496 (28%), Positives = 234/496 (47%), Gaps = 58/496 (11%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWT 77
           I  Y+K   ID ++ LF  MP+R++ ++NA+L  + +   L +A  LF EMPERN+VSW 
Sbjct: 47  IEFYAKCNAIDASRRLFDQMPKRDIYTWNAILGAYCKASELEDAHVLFAEMPERNIVSWN 106

Query: 78  AMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRN-GEL--NEARKVFNSMPIK- 133
            +I  L   G   +A  ++  M     V  +  +  ++   G L   E  +  + + IK 
Sbjct: 107 TLISALTRNGFEQKALGVYYRMSREGFVPTHFTLASVLSACGALVDVECGRRCHGISIKI 166

Query: 134 ----NVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLF 189
               N+   NA++  Y +C  +G+AI  F ++ E N V++T+M+ G   + +V E + LF
Sbjct: 167 GLDNNIYVGNALLGMYAKCRCIGDAIQAFGDVPEPNEVSFTAMMGGLADSDQVNEAFRLF 226

Query: 190 RRMPRKNV----VSWTAMI-----GGFAWNGFHKESLLLFIEMKG------ICDNGNNCN 234
           R M R  +    VS ++++     GG    G H  + +L  ++ G         +G   +
Sbjct: 227 RLMLRNRIHVDSVSLSSVLGVCSRGGCGEFGLHDSNDVLSSDVHGQQVHCLTIKHGFESD 286

Query: 235 VQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNA--------Y 286
           +   NS+++ Y + G ++ A+ +F  +P    +SW  MI GY    Q S A        Y
Sbjct: 287 LHLNNSLLDMYAKNGNMDSAEMIFVNMPEVSVVSWNVMIAGYGQKSQSSKAIEYLQRMQY 346

Query: 287 Y---------------------------LFHNMPDRDAVAWTAMISGLVQNELFVEATYL 319
           +                           +F  M      +W  ++SG  QNE   EA  L
Sbjct: 347 HGFEPDEITYVNMLVACIKSGDIEAGRQMFDGMSSPSLSSWNTILSGYSQNENHKEAVKL 406

Query: 320 FMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAK 379
           F EM+   V P   T +++  +      ++ GRQ+H V  K    +D+ L + LI MY+K
Sbjct: 407 FREMQFRSVHPDRTTLAIILSSLAGMMLLEGGRQVHAVSQKAVFRTDIYLASGLIGMYSK 466

Query: 380 CGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGI 439
           CG ++ A  IF  +   D+V WNSM+ G S + L  E    F+ M E G  P+  ++  +
Sbjct: 467 CGKVEMAKRIFDRIAELDIVCWNSMMAGLSLNSLDKEAFTFFKKMREKGMFPSQFSYATV 526

Query: 440 LSACSHAGLVSRGWEL 455
           LS C+    +S+G ++
Sbjct: 527 LSCCAKLSSLSQGRQV 542



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 110/438 (25%), Positives = 208/438 (47%), Gaps = 37/438 (8%)

Query: 139 NAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVV 198
           N +I  Y +C  +  +  LF++M +R++ TW +++  YC+A E+E+ + LF  MP +N+V
Sbjct: 44  NRLIEFYAKCNAIDASRRLFDQMPKRDIYTWNAILGAYCKASELEDAHVLFAEMPERNIV 103

Query: 199 SWTAMIGGFAWNGFHKESLLLFIEM--KGICDNGNNCN--VQSCNSMINGYIRFGRLEEA 254
           SW  +I     NGF +++L ++  M  +G           + +C ++++  +  GR    
Sbjct: 104 SWNTLISALTRNGFEQKALGVYYRMSREGFVPTHFTLASVLSACGALVD--VECGR--RC 159

Query: 255 QNLFDTVPVRDEISWTSMIDG-YLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELF 313
             +   + + + I   + + G Y     + +A   F ++P+ + V++TAM+ GL  ++  
Sbjct: 160 HGISIKIGLDNNIYVGNALLGMYAKCRCIGDAIQAFGDVPEPNEVSFTAMMGGLADSDQV 219

Query: 314 VEATYLFMEMRAHGVPPLNATFSVLFG--AAGATANIDL------------GRQIHCVLM 359
            EA  LF  M  + +   + + S + G  + G      L            G+Q+HC+ +
Sbjct: 220 NEAFRLFRLMLRNRIHVDSVSLSSVLGVCSRGGCGEFGLHDSNDVLSSDVHGQQVHCLTI 279

Query: 360 KTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLK 419
           K   ESDL L N L+ MYAK G +D+A  IF NM    +VSWN M+ G+     +++ ++
Sbjct: 280 KHGFESDLHLNNSLLDMYAKNGNMDSAEMIFVNMPEVSVVSWNVMIAGYGQKSQSSKAIE 339

Query: 420 VFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLL 479
             + M   G  P+ +T++ +L AC  +G +  G ++F+ M       P    + ++++  
Sbjct: 340 YLQRMQYHGFEPDEITYVNMLVACIKSGDIEAGRQMFDGM-----SSPSLSSWNTILSGY 394

Query: 480 GRAGKIKEAEEFVLRLPF---EPDHRIWGALLGACG---FCEGNAEIAEHAAKRLLELDP 533
            +    KEA +    + F    PD      +L +       EG  ++   + K +   D 
Sbjct: 395 SQNENHKEAVKLFREMQFRSVHPDRTTLAIILSSLAGMMLLEGGRQVHAVSQKAVFRTDI 454

Query: 534 LNAPAHVVLCNIYAASGR 551
             A     L  +Y+  G+
Sbjct: 455 YLASG---LIGMYSKCGK 469



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 56/226 (24%), Positives = 105/226 (46%), Gaps = 22/226 (9%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEM----PERNV 73
           I  YSK G +D A+ +F +M  +N V++N M+ G+ QNG   EA  L+E+M     + + 
Sbjct: 562 IDMYSKCGDVDAARWVFDMMLGKNTVTWNEMIHGYAQNGCGDEAVLLYEDMIGSGEKPDG 621

Query: 74  VSWTAMICGLADAGRVCEARKLFEEMPERN-----VVSWNSMVVGLIRNGELNEARKVFN 128
           +++ A++   + +G V    K+F  M + +     V  +  ++  L R G L+EA  + +
Sbjct: 622 ITFVAVLTACSHSGLVDTGIKIFNSMQQEHGVEPLVDHYTCIIDSLGRAGRLHEAEVLID 681

Query: 129 SMPIK-NVISWNAMIAG---YVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEE 184
            MP K + I W  +++    Y +  +   A      ++ +N   +  + + Y   G  ++
Sbjct: 682 KMPCKYDPIIWEVLLSSCRVYADVSLARRAAEELFHLDPQNSAPYVLLANIYSSLGRWDD 741

Query: 185 GYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNG 230
              +   M    VV       G++W   HK  +  F+    + DNG
Sbjct: 742 AKAVRELMSYNQVVKDP----GYSWIE-HKNGMQAFM----VDDNG 778



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/124 (26%), Positives = 52/124 (41%), Gaps = 31/124 (25%)

Query: 351 GRQIHCVLMKTESESDLILENCLISMYAKCGVID-------------------------- 384
           G+ IH  ++++    D  L N LI  YAKC  ID                          
Sbjct: 24  GKLIHAHMLRSRLSDDTFLSNRLIEFYAKCNAIDASRRLFDQMPKRDIYTWNAILGAYCK 83

Query: 385 -----NAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGI 439
                +A+ +F+ M  R++VSWN+++   + +G   + L V+  M   G  P   T   +
Sbjct: 84  ASELEDAHVLFAEMPERNIVSWNTLISALTRNGFEQKALGVYYRMSREGFVPTHFTLASV 143

Query: 440 LSAC 443
           LSAC
Sbjct: 144 LSAC 147


>gi|296089060|emb|CBI38763.3| unnamed protein product [Vitis vinifera]
          Length = 719

 Score =  298 bits (763), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 205/646 (31%), Positives = 317/646 (49%), Gaps = 128/646 (19%)

Query: 11  VVHLTSS----ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFE 66
            VH +S     ++  SK G +D+A+ LF +MP R+  S+N M+  +  +GRL+EAR+LF 
Sbjct: 37  TVHSSSDSNWVLSNLSKCGRVDDARKLFDVMPDRDECSWNTMIGAYANSGRLNEARKLFY 96

Query: 67  EMPERNVVSWTAMICGLADAGRVCEARKLFEEMP---ER-NVVSWNSMVVGLIRNGELNE 122
           E P R+ ++W+++I G    G   EA +LF EM    ER N  +W S V+ +     L E
Sbjct: 97  ETPIRSCITWSSLISGYCRYGCDVEALELFWEMQYEGERPNQFTWGS-VLRVCSMYVLLE 155

Query: 123 ARKVFNSMPIKNVISWNAMIAG-----YVECCMMGEAIVLFE-EMEERNVVTWTSMISGY 176
             K  ++  IK     NA +       Y +C  + EA  LFE   ++RN V WT+M++GY
Sbjct: 156 KGKQIHAHAIKTQFDSNAFVVTGLVDMYAKCKCILEAEYLFELAPDKRNHVLWTAMVTGY 215

Query: 177 CRAGEVEEGYCLFRRMPRKNV-------------------------VSWTAMIGGFAWNG 211
            + G+  +    FR M  + +                         V    +  GF  N 
Sbjct: 216 SQNGDGHKAIECFRDMRGEGIECNQFTFPSILTACGSISACGFGAQVHGCIVRSGFGANV 275

Query: 212 FHKESLLLFIEMKGICDNGNNC----------NVQSCNSMINGYIRFGRLEEAQNLFDTV 261
           F   +L   ++M   C + +N           +  S NSMI G +R G  EEA +LF  +
Sbjct: 276 FVGSAL---VDMYSKCGDLSNARRMLETMEVDDPVSWNSMIVGCVRQGLGEEALSLFRIM 332

Query: 262 PVR----DEISWTS-----MIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNEL 312
            +R    DE ++ S     ++D Y   G    A+ +F  M D+D ++WT++++G V N  
Sbjct: 333 HLRHMKIDEFTYPSLVNNALVDMYAKRGYFDYAFDVFEKMTDKDVISWTSLVTGCVHNGS 392

Query: 313 FVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENC 372
           + EA  LF EMR  G+ P     + +  A                           L+N 
Sbjct: 393 YEEALRLFCEMRIMGIHPDQIVIAAVLSA---------------------------LDNS 425

Query: 373 LISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPN 432
           L+SMYAKCG I++A  +F +M  +D+++W ++++G++ +G                    
Sbjct: 426 LVSMYAKCGCIEDANKVFDSMEIQDVITWTALIVGYAQNG-------------------- 465

Query: 433 SVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFV 492
                             RG + F +M +VY I+PGPEHY  MI+LLGR+GK+ EA+E +
Sbjct: 466 ------------------RGRDYFQSMEEVYGIKPGPEHYACMIDLLGRSGKLMEAKELL 507

Query: 493 LRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRH 552
            ++  +PD  +W ALL AC    GN E+ E AA  L EL+P NA  +V+L N+Y+A+G+ 
Sbjct: 508 NQMAVQPDATVWKALLAACRV-HGNVELGERAANNLFELEPKNAVPYVLLSNLYSAAGKW 566

Query: 553 VEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
            E  K R  M L+GV K PGCSW+  +  +  F+S D+   + AEI
Sbjct: 567 EEAAKTRRLMKLRGVSKEPGCSWIEMSSKVHRFMSEDRSHPRTAEI 612



 Score = 55.8 bits (133), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 60/217 (27%), Positives = 99/217 (45%), Gaps = 52/217 (23%)

Query: 6   HPKSLVVHLTSS------ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLS 59
           HP  +V+    S      ++ Y+K G I++A  +F  M  ++V+++ A++ G+ QNGR  
Sbjct: 409 HPDQIVIAAVLSALDNSLVSMYAKCGCIEDANKVFDSMEIQDVITWTALIVGYAQNGR-- 466

Query: 60  EARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGE 119
             R  F+ M E         + G+                PE     +  M+  L R+G+
Sbjct: 467 -GRDYFQSMEE---------VYGIKPG-------------PEH----YACMIDLLGRSGK 499

Query: 120 LNEARKVFNSMPIK-NVISWNAMIA-----GYVECCMMGE--AIVLFEEMEERNVVTWTS 171
           L EA+++ N M ++ +   W A++A     G VE   +GE  A  LF E+E +N V +  
Sbjct: 500 LMEAKELLNQMAVQPDATVWKALLAACRVHGNVE---LGERAANNLF-ELEPKNAVPYVL 555

Query: 172 MISGYCRAGEVEEGYCLFRRMPRKNV-----VSWTAM 203
           + + Y  AG+ EE     R M  + V      SW  M
Sbjct: 556 LSNLYSAAGKWEEAAKTRRLMKLRGVSKEPGCSWIEM 592


>gi|15235115|ref|NP_195663.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75210987|sp|Q9SVA5.1|PP357_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g39530
 gi|5042169|emb|CAB44688.1| putative protein [Arabidopsis thaliana]
 gi|7270937|emb|CAB80616.1| putative protein [Arabidopsis thaliana]
 gi|332661682|gb|AEE87082.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 834

 Score =  298 bits (762), Expect = 7e-78,   Method: Compositional matrix adjust.
 Identities = 194/650 (29%), Positives = 314/650 (48%), Gaps = 100/650 (15%)

Query: 39  QRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEE 98
            R+V     ++  +L++G +  AR +F+ +PE++ V+WT MI G    GR   + +LF +
Sbjct: 180 DRDVYVGTLLIDFYLKDGNIDYARLVFDALPEKSTVTWTTMISGCVKMGRSYVSLQLFYQ 239

Query: 99  MPERNVVS---------------------------------------WNSMVVGLIRNGE 119
           + E NVV                                         N ++   ++ G 
Sbjct: 240 LMEDNVVPDGYILSTVLSACSILPFLEGGKQIHAHILRYGLEMDASLMNVLIDSYVKCGR 299

Query: 120 LNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEE---RNVVTWTSMISGY 176
           +  A K+FN MP KN+ISW  +++GY +  +  EA+ LF  M +   +  +   S I   
Sbjct: 300 VIAAHKLFNGMPNKNIISWTTLLSGYKQNALHKEAMELFTSMSKFGLKPDMYACSSILTS 359

Query: 177 CRA------GEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNG 230
           C +      G     Y +   +   + V+  ++I  +A             + + + D  
Sbjct: 360 CASLHALGFGTQVHAYTIKANLGNDSYVT-NSLIDMYA-------KCDCLTDARKVFDIF 411

Query: 231 NNCNVQSCNSMINGYIRFG---RLEEAQNLFDTVPVR----------------------- 264
              +V   N+MI GY R G    L EA N+F  +  R                       
Sbjct: 412 AAADVVLFNAMIEGYSRLGTQWELHEALNIFRDMRFRLIRPSLLTFVSLLRASASLTSLG 471

Query: 265 ----------------DEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLV 308
                           D  + +++ID Y +   + ++  +F  M  +D V W +M +G V
Sbjct: 472 LSKQIHGLMFKYGLNLDIFAGSALIDVYSNCYCLKDSRLVFDEMKVKDLVIWNSMFAGYV 531

Query: 309 QNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLI 368
           Q     EA  LF+E++     P   TF+ +  AAG  A++ LG++ HC L+K   E +  
Sbjct: 532 QQSENEEALNLFLELQLSRERPDEFTFANMVTAAGNLASVQLGQEFHCQLLKRGLECNPY 591

Query: 369 LENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESG 428
           + N L+ MYAKCG  ++A+  F +  SRD+V WNS++  +++HG   + L++ E M+  G
Sbjct: 592 ITNALLDMYAKCGSPEDAHKAFDSAASRDVVCWNSVISSYANHGEGKKALQMLEKMMSEG 651

Query: 429 THPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEA 488
             PN +TF+G+LSACSHAGLV  G + F  M   + I+P  EHYV M++LLGRAG++ +A
Sbjct: 652 IEPNYITFVGVLSACSHAGLVEDGLKQFELMLR-FGIEPETEHYVCMVSLLGRAGRLNKA 710

Query: 489 EEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAA 548
            E + ++P +P   +W +LL  C    GN E+AEHAA+  +  DP ++ +  +L NIYA+
Sbjct: 711 RELIEKMPTKPAAIVWRSLLSGCAKA-GNVELAEHAAEMAILSDPKDSGSFTMLSNIYAS 769

Query: 549 SGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
            G   E  K+R  M ++GV K PG SW+  N  + +FLS DK   +  +I
Sbjct: 770 KGMWTEAKKVRERMKVEGVVKEPGRSWIGINKEVHIFLSKDKSHCKANQI 819



 Score =  155 bits (392), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 112/383 (29%), Positives = 185/383 (48%), Gaps = 19/383 (4%)

Query: 86  AGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMI-AG 144
           AG +  ARK+FE+MPERN+VSW++MV     +G   E+  VF         S N  I + 
Sbjct: 92  AGGMVYARKVFEKMPERNLVSWSTMVSACNHHGIYEESLVVFLEFWRTRKDSPNEYILSS 151

Query: 145 YVECC--MMGEAIVLFEEME--------ERNVVTWTSMISGYCRAGEVEEGYCLFRRMPR 194
           +++ C  + G    +  +++        +R+V   T +I  Y + G ++    +F  +P 
Sbjct: 152 FIQACSGLDGRGRWMVFQLQSFLVKSGFDRDVYVGTLLIDFYLKDGNIDYARLVFDALPE 211

Query: 195 KNVVSWTAMIGGFAWNGFHKESLLLFIEM--KGICDNGNNCNVQSCNSMINGYIRFGRLE 252
           K+ V+WT MI G    G    SL LF ++    +  +G   +       I  ++  G+  
Sbjct: 212 KSTVTWTTMISGCVKMGRSYVSLQLFYQLMEDNVVPDGYILSTVLSACSILPFLEGGKQI 271

Query: 253 EAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNEL 312
            A  L   + + D      +ID Y+  G+V  A+ LF+ MP+++ ++WT ++SG  QN L
Sbjct: 272 HAHILRYGLEM-DASLMNVLIDSYVKCGRVIAAHKLFNGMPNKNIISWTTLLSGYKQNAL 330

Query: 313 FVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENC 372
             EA  LF  M   G+ P     S +  +  +   +  G Q+H   +K    +D  + N 
Sbjct: 331 HKEAMELFTSMSKFGLKPDMYACSSILTSCASLHALGFGTQVHAYTIKANLGNDSYVTNS 390

Query: 373 LISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLA---NETLKVFESMLESGT 429
           LI MYAKC  + +A  +F    + D+V +N+M+ G+S  G     +E L +F  M     
Sbjct: 391 LIDMYAKCDCLTDARKVFDIFAAADVVLFNAMIEGYSRLGTQWELHEALNIFRDMRFRLI 450

Query: 430 HPNSVTFLGILSACSHAGLVSRG 452
            P+ +TF+ +L A   A L S G
Sbjct: 451 RPSLLTFVSLLRAS--ASLTSLG 471



 Score =  139 bits (349), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 94/328 (28%), Positives = 167/328 (50%), Gaps = 15/328 (4%)

Query: 172 MISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEM-KGICDNG 230
           +I+ Y RAG +     +F +MP +N+VSW+ M+     +G ++ESL++F+E  +   D+ 
Sbjct: 85  LINLYSRAGGMVYARKVFEKMPERNLVSWSTMVSACNHHGIYEESLVVFLEFWRTRKDSP 144

Query: 231 N----NCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAY 286
           N    +  +Q+C S ++G  R+   +    L  +   RD    T +ID YL  G +  A 
Sbjct: 145 NEYILSSFIQAC-SGLDGRGRWMVFQLQSFLVKSGFDRDVYVGTLLIDFYLKDGNIDYAR 203

Query: 287 YLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATA 346
            +F  +P++  V WT MISG V+      +  LF ++    V P     S +  A     
Sbjct: 204 LVFDALPEKSTVTWTTMISGCVKMGRSYVSLQLFYQLMEDNVVPDGYILSTVLSACSILP 263

Query: 347 NIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVM 406
            ++ G+QIH  +++   E D  L N LI  Y KCG +  A+ +F+ M +++++SW +++ 
Sbjct: 264 FLEGGKQIHAHILRYGLEMDASLMNVLIDSYVKCGRVIAAHKLFNGMPNKNIISWTTLLS 323

Query: 407 GFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQ 466
           G+  + L  E +++F SM + G  P+      IL++C  A L + G   F      Y I+
Sbjct: 324 GYKQNALHKEAMELFTSMSKFGLKPDMYACSSILTSC--ASLHALG---FGTQVHAYTIK 378

Query: 467 P--GPEHYV--SMINLLGRAGKIKEAEE 490
              G + YV  S+I++  +   + +A +
Sbjct: 379 ANLGNDSYVTNSLIDMYAKCDCLTDARK 406



 Score = 72.0 bits (175), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 69/236 (29%), Positives = 95/236 (40%), Gaps = 46/236 (19%)

Query: 364 ESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVF-E 422
           E D  L N LI++Y++ G +  A  +F  M  R+LVSW++MV   +HHG+  E+L VF E
Sbjct: 76  ELDTYLSNILINLYSRAGGMVYARKVFEKMPERNLVSWSTMVSACNHHGIYEESLVVFLE 135

Query: 423 SMLESGTHPNSVTFLGILSACSHAGLVSRG-WELFNAMFDVYKIQPGPEHYVS--MINLL 479
                   PN       + ACS  GL  RG W +F     + K     + YV   +I+  
Sbjct: 136 FWRTRKDSPNEYILSSFIQACS--GLDGRGRWMVFQLQSFLVKSGFDRDVYVGTLLIDFY 193

Query: 480 GRAGKIKEAEEFVLRLPFE----------------------------------PDHRIWG 505
            + G I  A      LP +                                  PD  I  
Sbjct: 194 LKDGNIDYARLVFDALPEKSTVTWTTMISGCVKMGRSYVSLQLFYQLMEDNVVPDGYILS 253

Query: 506 ALLGACG---FCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKL 558
            +L AC    F EG  +I  H  +  LE+D   A    VL + Y   GR +  HKL
Sbjct: 254 TVLSACSILPFLEGGKQIHAHILRYGLEMD---ASLMNVLIDSYVKCGRVIAAHKL 306


>gi|225428334|ref|XP_002279974.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial [Vitis vinifera]
          Length = 623

 Score =  298 bits (762), Expect = 7e-78,   Method: Compositional matrix adjust.
 Identities = 175/499 (35%), Positives = 279/499 (55%), Gaps = 34/499 (6%)

Query: 119 ELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIV--------LFEEMEERNVVTWT 170
           +L+ A +  ++M    V +     +  ++CC    A+         +F +  E  +    
Sbjct: 35  DLHRAMRAMDAMERHGVFADAITYSELIKCCSARGAVQEGKRVHEHIFCKGYEPKMFVVN 94

Query: 171 SMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEM--KGICD 228
           ++++ Y +   +EE   LF  MP +NVVSWT MI  ++ N  + ++L   I M  +G+  
Sbjct: 95  TLLNMYVKFNLLEEAEDLFDEMPERNVVSWTTMISAYS-NKLNDKALKCLILMFREGVRP 153

Query: 229 N--GNNCNVQSCNSMIN------GYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVG 280
           N    +  +++C+ + N      G I+ G       L   V VR     +++ID Y    
Sbjct: 154 NMFTYSSVLRACDGLPNLRQLHCGIIKTG-------LESDVFVR-----SALIDVYSKWS 201

Query: 281 QVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFG 340
            + NA  +F  MP RD V W ++I G  QN    EA  LF  M+  G     AT + +  
Sbjct: 202 DLDNALGVFDEMPTRDLVVWNSIIGGFAQNSDGNEALNLFKRMKRAGFLADQATLTSVLR 261

Query: 341 AAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVS 400
           A    A ++LGRQ+H  ++K +   DLIL N LI MY KCG +++A + FS MV +D++S
Sbjct: 262 ACTGLALLELGRQVHVHVLKFDQ--DLILNNALIDMYCKCGSLEDANSAFSRMVEKDVIS 319

Query: 401 WNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMF 460
           W++MV G + +G + + L++FESM ESG+ PN +T LG+L ACSHAGLV +GW  F +M 
Sbjct: 320 WSTMVAGLAQNGYSRQALELFESMKESGSRPNYITVLGVLFACSHAGLVEKGWYYFRSMK 379

Query: 461 DVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEI 520
            ++ + PG EHY  +I+LLGRAG++ EA + +  +  EPD   W  LLGAC     N ++
Sbjct: 380 KLFGVDPGREHYGCLIDLLGRAGRLDEAVKLIHEMECEPDSVTWRTLLGACRV-HRNVDL 438

Query: 521 AEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNG 580
           A +AAK+++EL+P +A  +++L NIYA + R  +  ++R  M  +G+RK PGCSW+  + 
Sbjct: 439 AIYAAKKIIELEPEDAGTYILLSNIYANTQRWEDVAEVRKTMTNRGIRKTPGCSWIEVDK 498

Query: 581 GIQMFLSGDKIPAQVAEIL 599
            I +F+ GD    ++ EI+
Sbjct: 499 QIHVFILGDTSHPKIEEIV 517



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 87/347 (25%), Positives = 160/347 (46%), Gaps = 56/347 (16%)

Query: 7   PKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGF---LQNGRLSEARR 63
           PK  VV+  + +  Y K   ++EA+ LF  MP+RNVVS+  M+S +   L +  L     
Sbjct: 88  PKMFVVN--TLLNMYVKFNLLEEAEDLFDEMPERNVVSWTTMISAYSNKLNDKALKCLIL 145

Query: 64  LFEEMPERNVVSWTAMI-------------CGLADAGRVCE------------------- 91
           +F E    N+ ++++++             CG+   G   +                   
Sbjct: 146 MFREGVRPNMFTYSSVLRACDGLPNLRQLHCGIIKTGLESDVFVRSALIDVYSKWSDLDN 205

Query: 92  ARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCM- 150
           A  +F+EMP R++V WNS++ G  +N + NEA  +F  M     ++  A +   +  C  
Sbjct: 206 ALGVFDEMPTRDLVVWNSIIGGFAQNSDGNEALNLFKRMKRAGFLADQATLTSVLRACTG 265

Query: 151 -----MGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIG 205
                +G  + +     +++++   ++I  YC+ G +E+    F RM  K+V+SW+ M+ 
Sbjct: 266 LALLELGRQVHVHVLKFDQDLILNNALIDMYCKCGSLEDANSAFSRMVEKDVISWSTMVA 325

Query: 206 GFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEA-------QNLF 258
           G A NG+ +++L LF  MK   ++G+  N  +   ++      G +E+        + LF
Sbjct: 326 GLAQNGYSRQALELFESMK---ESGSRPNYITVLGVLFACSHAGLVEKGWYYFRSMKKLF 382

Query: 259 DTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMP-DRDAVAWTAMI 304
              P R+   +  +ID     G++  A  L H M  + D+V W  ++
Sbjct: 383 GVDPGREH--YGCLIDLLGRAGRLDEAVKLIHEMECEPDSVTWRTLL 427



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 56/239 (23%), Positives = 100/239 (41%), Gaps = 47/239 (19%)

Query: 15  TSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMP----- 69
           ++ I  YSK   +D A  +F  MP R++V +N+++ GF QN   +EA  LF+ M      
Sbjct: 191 SALIDVYSKWSDLDNALGVFDEMPTRDLVVWNSIIGGFAQNSDGNEALNLFKRMKRAGFL 250

Query: 70  --------------------------------ERNVVSWTAMICGLADAGRVCEARKLFE 97
                                           +++++   A+I      G + +A   F 
Sbjct: 251 ADQATLTSVLRACTGLALLELGRQVHVHVLKFDQDLILNNALIDMYCKCGSLEDANSAFS 310

Query: 98  EMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECC----MMGE 153
            M E++V+SW++MV GL +NG   +A ++F SM           + G +  C    ++ +
Sbjct: 311 RMVEKDVISWSTMVAGLAQNGYSRQALELFESMKESGSRPNYITVLGVLFACSHAGLVEK 370

Query: 154 AIVLFEEMEERNVVT-----WTSMISGYCRAGEVEEGYCLFRRMP-RKNVVSWTAMIGG 206
               F  M++   V      +  +I    RAG ++E   L   M    + V+W  ++G 
Sbjct: 371 GWYYFRSMKKLFGVDPGREHYGCLIDLLGRAGRLDEAVKLIHEMECEPDSVTWRTLLGA 429



 Score = 55.8 bits (133), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 43/152 (28%), Positives = 72/152 (47%), Gaps = 15/152 (9%)

Query: 39  QRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEE 98
            ++++  NA++  + + G L +A   F  M E++V+SW+ M+ GLA  G   +A +LFE 
Sbjct: 283 DQDLILNNALIDMYCKCGSLEDANSAFSRMVEKDVISWSTMVAGLAQNGYSRQALELFES 342

Query: 99  MPERNV---------VSWNSMVVGLIRNG--ELNEARKVFNSMPIKNVISWNAMIAGYVE 147
           M E            V +     GL+  G       +K+F   P +    +  +I     
Sbjct: 343 MKESGSRPNYITVLGVLFACSHAGLVEKGWYYFRSMKKLFGVDPGRE--HYGCLIDLLGR 400

Query: 148 CCMMGEAIVLFEEME-ERNVVTWTSMISGYCR 178
              + EA+ L  EME E + VTW +++ G CR
Sbjct: 401 AGRLDEAVKLIHEMECEPDSVTWRTLL-GACR 431


>gi|302760467|ref|XP_002963656.1| hypothetical protein SELMODRAFT_80298 [Selaginella moellendorffii]
 gi|300168924|gb|EFJ35527.1| hypothetical protein SELMODRAFT_80298 [Selaginella moellendorffii]
          Length = 597

 Score =  298 bits (762), Expect = 7e-78,   Method: Compositional matrix adjust.
 Identities = 193/574 (33%), Positives = 291/574 (50%), Gaps = 47/574 (8%)

Query: 1   MSERNHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSE 60
           M+ RN     V+  T+ I+  +  G    A+A+F  M Q N  S+NAM+SG++++G L  
Sbjct: 32  MAARN-----VITWTTMISAIAADGDSLRARAVFDRMAQHNTTSWNAMISGYVESGELQP 86

Query: 61  ARRLFEEMPERNVVSWTAMICGLADAGRVCEARKL-FEEMPERNV---VSWNSMVVGLIR 116
           A  LF+++PER++VSW AM+ GLA AG V   + L F EMPERN+   VSWNSM+     
Sbjct: 87  AVDLFQQIPERDLVSWNAMLAGLAQAGDVSHCQALFFTEMPERNIVNLVSWNSMIQAFAS 146

Query: 117 NGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGY 176
            G   +A  + + MP +N+ISWN+ IA + +  ++ EA  LF+ +  +N VTW++MIS Y
Sbjct: 147 GGHAEKATAILDEMPEQNLISWNSAIAAFKDSGLVTEARALFDRLPRKNEVTWSAMISAY 206

Query: 177 CRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQ 236
              G +EE   L   +P K   S TA+I G+A +   KE+  +F     + D     ++ 
Sbjct: 207 AMNGFLEEASGLCSLVPMKEASSLTALIQGYALHNRLKEATEVFQRFPLLQD-----DLI 261

Query: 237 SCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQ-VSNAYYLFHNMPDR 295
           +  SMI  Y   G  +E++ LFD +  RD + W +M+ G L+ G+ +  A  LFH MP  
Sbjct: 262 AVTSMIRAYGAAGFPDESKALFDRLRQRDLLCWITML-GALAQGECMDRAEALFHKMPGH 320

Query: 296 DAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATF------------SVLFG--- 340
           DA  WTAMI+   Q   F +A   F   +   V  LNA              + LF    
Sbjct: 321 DAATWTAMITAYTQAGNFKQAKLFFDTTKEVSVVSLNAMLAAYCQQGNLKYATALFEKMP 380

Query: 341 -------AAGATANIDLGR--QIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFS 391
                  A    A   LG+      V    ES S   L N +I  YA  G ++ A  +F 
Sbjct: 381 SQNEASRAIAIAAYSRLGQLGDAKRVFDSIESLSAPGL-NSMIGGYAHGGYLNEARIVFQ 439

Query: 392 NMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSR 451
           +  +RD   W++M+      GL ++ + +F  M + G     +TF  ++++ SH G +  
Sbjct: 440 SSAARDSSPWSTMIAALGKKGLFDDAVDLFREMQQQGVKAGEITFGALIASSSHGGRLEE 499

Query: 452 GWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGAC 511
           G E F +M   Y I PG +HY  +++LL R+G+++EAEE    +   PD   W  +LGAC
Sbjct: 500 GCEHFQSMAADYGIDPGRDHYECIVDLLARSGRLEEAEELARSI---PDSSAWMKILGAC 556

Query: 512 GFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNI 545
                 A  A  A      LD   +  +++L NI
Sbjct: 557 WLQNDRARSARAAE---FALDARKSGPYILLANI 587



 Score =  184 bits (467), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 122/399 (30%), Positives = 197/399 (49%), Gaps = 27/399 (6%)

Query: 68  MPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVF 127
           MP ++ V+W AM+   A  G + EA K+F+EM  RNV++W +M+  +  +G+   AR VF
Sbjct: 1   MPSKDPVAWNAMLQANAVNGEIQEAWKIFDEMAARNVITWTTMISAIAADGDSLRARAVF 60

Query: 128 NSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYC 187
           + M   N  SWNAMI+GYVE   +  A+ LF+++ ER++V+W +M++G  +AG+V     
Sbjct: 61  DRMAQHNTTSWNAMISGYVESGELQPAVDLFQQIPERDLVSWNAMLAGLAQAGDVSHCQA 120

Query: 188 L-FRRMPRKNV---VSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMIN 243
           L F  MP +N+   VSW +MI  FA +G H E      +   I D     N+ S NS I 
Sbjct: 121 LFFTEMPERNIVNLVSWNSMIQAFA-SGGHAE------KATAILDEMPEQNLISWNSAIA 173

Query: 244 GYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAM 303
            +   G + EA+ LFD +P ++E++W++MI  Y   G +  A  L   +P ++A + TA+
Sbjct: 174 AFKDSGLVTEARALFDRLPRKNEVTWSAMISAYAMNGFLEEASGLCSLVPMKEASSLTAL 233

Query: 304 ISGLVQNELFVEATYLFMEMRAHGVPPLNATF---SVLFGAAGATANIDLGRQIHCVLMK 360
           I G   +    EAT +F        P L       + +  A GA    D  +     L  
Sbjct: 234 IQGYALHNRLKEATEVFQRF-----PLLQDDLIAVTSMIRAYGAAGFPDESK----ALFD 284

Query: 361 TESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKV 420
              + DL+    ++   A+   +D A  +F  M   D  +W +M+  ++  G   +    
Sbjct: 285 RLRQRDLLCWITMLGALAQGECMDRAEALFHKMPGHDAATWTAMITAYTQAGNFKQAKLF 344

Query: 421 FESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAM 459
           F++  E       V+   +L+A    G +     LF  M
Sbjct: 345 FDTTKEVSV----VSLNAMLAAYCQQGNLKYATALFEKM 379


>gi|356558562|ref|XP_003547574.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21300-like [Glycine max]
          Length = 846

 Score =  298 bits (762), Expect = 7e-78,   Method: Compositional matrix adjust.
 Identities = 209/664 (31%), Positives = 328/664 (49%), Gaps = 80/664 (12%)

Query: 1   MSERNHPKSLVVHL-----TSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQN 55
           M   N  +SL  H+     ++ I  Y+  G+I +A+ +F  +PQR+ + +N ML G++++
Sbjct: 165 MVVHNTARSLGFHVDLFVGSALIKLYADNGYICDARRVFDELPQRDTILWNVMLHGYVKS 224

Query: 56  GRLSEARRLFEEMPER----NVVSWTAMICGLADAGRVCEARKL--------FEEMPERN 103
           G  + A   F  M       N V++T ++   A  G+ C   ++        FE  P+  
Sbjct: 225 GDFNNAMGTFCGMRTSYSMVNSVTYTCILSICATRGKFCLGTQVHGLVIGSGFEFDPQVA 284

Query: 104 VVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEE 163
               N++V    + G L +ARK+FN+MP  + ++WN +IAGYV+     EA  LF  M  
Sbjct: 285 ----NTLVAMYSKCGNLFDARKLFNTMPQTDTVTWNGLIAGYVQNGFTDEAAPLFNAMIS 340

Query: 164 RNV----VTWTSMI-----SGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHK 214
             V    VT+ S +     SG  R  +    Y +  R+P  +V   +A+I  +   G   
Sbjct: 341 AGVKPDSVTFASFLPSILESGSLRHCKEVHSYIVRHRVPF-DVYLKSALIDIYFKGGD-- 397

Query: 215 ESLLLFIEM-KGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLF------DTVP----- 262
                 +EM + I       +V  C +MI+GY+  G   +A N F        VP     
Sbjct: 398 ------VEMARKIFQQNTLVDVAVCTAMISGYVLHGLNIDAINTFRWLIQEGMVPNSLTM 451

Query: 263 -----------------------VRDEIS-----WTSMIDGYLSVGQVSNAYYLFHNMPD 294
                                  ++ ++       +++ D Y   G++  AY  F  M +
Sbjct: 452 ASVLPACAALAALKLGKELHCDILKKQLENIVNVGSAITDMYAKCGRLDLAYEFFRRMSE 511

Query: 295 RDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQI 354
            D++ W +MIS   QN     A  LF +M   G    + + S    +A     +  G+++
Sbjct: 512 TDSICWNSMISSFSQNGKPEMAVDLFRQMGMSGAKFDSVSLSSALSSAANLPALYYGKEM 571

Query: 355 HCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLA 414
           H  +++    SD  + + LI MY+KCG +  A  +F+ M  ++ VSWNS++  + +HG A
Sbjct: 572 HGYVIRNAFSSDTFVASALIDMYSKCGKLALARCVFNLMAGKNEVSWNSIIAAYGNHGCA 631

Query: 415 NETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVS 474
            E L +F  ML +G HP+ VTFL I+SAC HAGLV  G   F+ M   Y I    EHY  
Sbjct: 632 RECLDLFHEMLRAGVHPDHVTFLVIISACGHAGLVGEGIHYFHCMTREYGIGARMEHYAC 691

Query: 475 MINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPL 534
           M++L GRAG++ EA + +  +PF PD  +WG LLGAC    GN E+A+ A++ LLELDP 
Sbjct: 692 MVDLYGRAGRLHEAFDAIKSMPFTPDAGVWGTLLGACRL-HGNVELAKLASRHLLELDPK 750

Query: 535 NAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQ 594
           N+  +V+L N++A +G      K+R  M  KGV+K+PG SW+  NGG  MF + +    +
Sbjct: 751 NSGYYVLLSNVHADAGEWGSVLKVRRLMKEKGVQKIPGYSWIDVNGGTHMFSAAEGNHPE 810

Query: 595 VAEI 598
             EI
Sbjct: 811 SVEI 814



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 114/475 (24%), Positives = 207/475 (43%), Gaps = 64/475 (13%)

Query: 56  GRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEM------PERNVVSWNS 109
           GR+S+   LF  +   N + W  MI GL   G    A   + +M      P++    +  
Sbjct: 93  GRISDGGNLFFGLELCNALPWNWMIRGLYMLGWFDFALLFYFKMLGSNVSPDKYTFPYVI 152

Query: 110 MVVGLIRNGEL-----NEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEER 164
              G + N  L     N AR +   +   ++   +A+I  Y +   + +A  +F+E+ +R
Sbjct: 153 KACGGLNNVPLCMVVHNTARSLGFHV---DLFVGSALIKLYADNGYICDARRVFDELPQR 209

Query: 165 NVVTWTSMISGYCRAGEVEEGYCLFRRMPRK----NVVSWTAMIGGFAWNGFHKESLLLF 220
           + + W  M+ GY ++G+       F  M       N V++T ++   A  G       L 
Sbjct: 210 DTILWNVMLHGYVKSGDFNNAMGTFCGMRTSYSMVNSVTYTCILSICATRG----KFCLG 265

Query: 221 IEMKG-ICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSV 279
            ++ G +  +G   + Q  N+++  Y + G L +A+ LF+T                   
Sbjct: 266 TQVHGLVIGSGFEFDPQVANTLVAMYSKCGNLFDARKLFNT------------------- 306

Query: 280 GQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLF 339
                       MP  D V W  +I+G VQN    EA  LF  M + GV P + TF+   
Sbjct: 307 ------------MPQTDTVTWNGLIAGYVQNGFTDEAAPLFNAMISAGVKPDSVTFASFL 354

Query: 340 GAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLV 399
            +   + ++   +++H  +++     D+ L++ LI +Y K G ++ A  IF      D+ 
Sbjct: 355 PSILESGSLRHCKEVHSYIVRHRVPFDVYLKSALIDIYFKGGDVEMARKIFQQNTLVDVA 414

Query: 400 SWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAM 459
              +M+ G+  HGL  + +  F  +++ G  PNS+T   +L AC+    +  G EL    
Sbjct: 415 VCTAMISGYVLHGLNIDAINTFRWLIQEGMVPNSLTMASVLPACAALAALKLGKELH--- 471

Query: 460 FDVYKIQPGPEHYV----SMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGA 510
            D+ K Q   E+ V    ++ ++  + G++  A EF  R+  E D   W +++ +
Sbjct: 472 CDILKKQ--LENIVNVGSAITDMYAKCGRLDLAYEFFRRMS-ETDSICWNSMISS 523



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 80/310 (25%), Positives = 145/310 (46%), Gaps = 14/310 (4%)

Query: 165 NVVTWTSMISG-YCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEM 223
           +V   +S + G Y   G + +G  LF  +   N + W  MI G    G+   +LL + +M
Sbjct: 77  DVCALSSRVLGLYVLCGRISDGGNLFFGLELCNALPWNWMIRGLYMLGWFDFALLFYFKM 136

Query: 224 KGICDNGNNCN----VQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSV 279
            G   + +       +++C  + N  +       A++L   V   D    +++I  Y   
Sbjct: 137 LGSNVSPDKYTFPYVIKACGGLNNVPLCMVVHNTARSLGFHV---DLFVGSALIKLYADN 193

Query: 280 GQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLF 339
           G + +A  +F  +P RD + W  M+ G V++  F  A   F  MR       + T++ + 
Sbjct: 194 GYICDARRVFDELPQRDTILWNVMLHGYVKSGDFNNAMGTFCGMRTSYSMVNSVTYTCIL 253

Query: 340 GAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLV 399
                     LG Q+H +++ +  E D  + N L++MY+KCG + +A  +F+ M   D V
Sbjct: 254 SICATRGKFCLGTQVHGLVIGSGFEFDPQVANTLVAMYSKCGNLFDARKLFNTMPQTDTV 313

Query: 400 SWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAM 459
           +WN ++ G+  +G  +E   +F +M+ +G  P+SVTF   L +   +G +    E+ + +
Sbjct: 314 TWNGLIAGYVQNGFTDEAAPLFNAMISAGVKPDSVTFASFLPSILESGSLRHCKEVHSYI 373

Query: 460 ------FDVY 463
                 FDVY
Sbjct: 374 VRHRVPFDVY 383



 Score = 45.8 bits (107), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 28/113 (24%), Positives = 48/113 (42%)

Query: 331 LNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIF 390
           L      LF A    + +   RQ+H  ++         L + ++ +Y  CG I +  N+F
Sbjct: 43  LTTQLESLFRACSDASVVQQARQVHTQIIVGGMSDVCALSSRVLGLYVLCGRISDGGNLF 102

Query: 391 SNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSAC 443
             +   + + WN M+ G    G  +  L  +  ML S   P+  TF  ++ AC
Sbjct: 103 FGLELCNALPWNWMIRGLYMLGWFDFALLFYFKMLGSNVSPDKYTFPYVIKAC 155


>gi|449457225|ref|XP_004146349.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31430-like [Cucumis sativus]
          Length = 781

 Score =  298 bits (762), Expect = 7e-78,   Method: Compositional matrix adjust.
 Identities = 182/556 (32%), Positives = 287/556 (51%), Gaps = 15/556 (2%)

Query: 56  GRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEM------PERNVVSWNS 109
           G L  A ++F  + + ++  +  M+   A  G + +   LF+++      P+     +  
Sbjct: 191 GNLRYAEKIFNYVQDPSLFVYNVMVKMYAKRGILRKVLLLFQQLREDGLWPDGFTYPFVL 250

Query: 110 MVVGLIRNGELNEARKVF---NSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNV 166
             +G +R+    E  + F     M + N + +N++I  Y E   +  A  LF+EM  R+ 
Sbjct: 251 KAIGCLRDVRQGEKVRGFIVKTGMDLDNYV-YNSLIDMYYELSNVENAKKLFDEMTTRDS 309

Query: 167 VTWTSMISGYCRAGEVEEGYCLFRRMPRK-NVVSWTAMIGGFAWNGFHKESLLLFIEMKG 225
           V+W  MISGY R    E+    FR M ++ N     A +          ++L L  E+  
Sbjct: 310 VSWNVMISGYVRCRRFEDAINTFREMQQEGNEKPDEATVVSTLSACTALKNLELGDEIHN 369

Query: 226 ICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNA 285
                     +  N++++ Y + G L  A+N+FD + +++ I WTSMI GY++ G +  A
Sbjct: 370 YVRKELGFTTRIDNALLDMYAKCGCLNIARNIFDEMSMKNVICWTSMISGYINCGDLREA 429

Query: 286 YYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGAT 345
             LF   P RD V WTAMI+G VQ   F +A  LF EM+   V P   T   L       
Sbjct: 430 RDLFDKSPVRDVVLWTAMINGYVQFHHFDDAVALFREMQIQRVKPDKFTVVTLLTGCAQL 489

Query: 346 ANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMV 405
             ++ G+ IH  L +     D+++   LI MY+KCG +D +  IF  +  +D  SW S++
Sbjct: 490 GALEQGKWIHGYLDENRITMDVVVGTALIEMYSKCGCVDKSLEIFYELEDKDTASWTSII 549

Query: 406 MGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKI 465
            G + +G  +E L++F  M   G  P+ +TF+G+LSACSH GLV  G   FN+M  V++I
Sbjct: 550 CGLAMNGKTSEALRLFSEMERVGAKPDDITFIGVLSACSHGGLVEEGRRFFNSMKKVHRI 609

Query: 466 QPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRI---WGALLGACGFCEGNAEIAE 522
           +P  EHY  +I+LLGRAG + EAEE +  +P E    +   +GALL AC     N ++ E
Sbjct: 610 EPKVEHYGCVIDLLGRAGLLDEAEELIQEIPIENCEIVVPLYGALLSACRI-HNNVDMGE 668

Query: 523 HAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGI 582
             AK+L  ++  ++  H +L NIYA+  R  +  K+R  M   GV+K+PGCS +  +G +
Sbjct: 669 RLAKKLENIESCDSSIHTLLANIYASVDRWEDAKKVRRKMKELGVKKMPGCSLIEVDGIV 728

Query: 583 QMFLSGDKIPAQVAEI 598
             FL GD    ++ EI
Sbjct: 729 HEFLVGDPSHPEMMEI 744



 Score =  135 bits (341), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 106/387 (27%), Positives = 171/387 (44%), Gaps = 39/387 (10%)

Query: 16  SSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEM------- 68
           S I  Y +   ++ AK LF  M  R+ VS+N M+SG+++  R  +A   F EM       
Sbjct: 283 SLIDMYYELSNVENAKKLFDEMTTRDSVSWNVMISGYVRCRRFEDAINTFREMQQEGNEK 342

Query: 69  -PERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVF 127
             E  VVS  +    L +     E      +         N+++    + G LN AR +F
Sbjct: 343 PDEATVVSTLSACTALKNLELGDEIHNYVRKELGFTTRIDNALLDMYAKCGCLNIARNIF 402

Query: 128 NSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYC 187
           + M +KNVI W +MI+GY+ C  + EA  LF++   R+VV WT+MI+GY +    ++   
Sbjct: 403 DEMSMKNVICWTSMISGYINCGDLREARDLFDKSPVRDVVLWTAMINGYVQFHHFDDAVA 462

Query: 188 LFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIR 247
           LFR M  + V            + F   +LL      G  + G           I+GY+ 
Sbjct: 463 LFREMQIQRVKP----------DKFTVVTLLTGCAQLGALEQGK---------WIHGYLD 503

Query: 248 FGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGL 307
             R+             D +  T++I+ Y   G V  +  +F+ + D+D  +WT++I GL
Sbjct: 504 ENRI-----------TMDVVVGTALIEMYSKCGCVDKSLEIFYELEDKDTASWTSIICGL 552

Query: 308 VQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTES-ESD 366
             N    EA  LF EM   G  P + TF  +  A      ++ GR+    + K    E  
Sbjct: 553 AMNGKTSEALRLFSEMERVGAKPDDITFIGVLSACSHGGLVEEGRRFFNSMKKVHRIEPK 612

Query: 367 LILENCLISMYAKCGVIDNAYNIFSNM 393
           +    C+I +  + G++D A  +   +
Sbjct: 613 VEHYGCVIDLLGRAGLLDEAEELIQEI 639



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 50/195 (25%), Positives = 89/195 (45%), Gaps = 1/195 (0%)

Query: 264 RDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEM 323
           RD I+         S+G +  A  +F+ + D     +  M+    +  +  +   LF ++
Sbjct: 175 RDTINKLMAFCADSSLGNLRYAEKIFNYVQDPSLFVYNVMVKMYAKRGILRKVLLLFQQL 234

Query: 324 RAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVI 383
           R  G+ P   T+  +  A G   ++  G ++   ++KT  + D  + N LI MY +   +
Sbjct: 235 REDGLWPDGFTYPFVLKAIGCLRDVRQGEKVRGFIVKTGMDLDNYVYNSLIDMYYELSNV 294

Query: 384 DNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTH-PNSVTFLGILSA 442
           +NA  +F  M +RD VSWN M+ G+       + +  F  M + G   P+  T +  LSA
Sbjct: 295 ENAKKLFDEMTTRDSVSWNVMISGYVRCRRFEDAINTFREMQQEGNEKPDEATVVSTLSA 354

Query: 443 CSHAGLVSRGWELFN 457
           C+    +  G E+ N
Sbjct: 355 CTALKNLELGDEIHN 369



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 53/196 (27%), Positives = 96/196 (48%), Gaps = 12/196 (6%)

Query: 11  VVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPE 70
           V+  TS I+ Y   G + EA+ LF   P R+VV + AM++G++Q     +A  LF EM  
Sbjct: 410 VICWTSMISGYINCGDLREARDLFDKSPVRDVVLWTAMINGYVQFHHFDDAVALFREMQI 469

Query: 71  RNV----VSWTAMICGLADAGRVCEARKLFEEMPER----NVVSWNSMVVGLIRNGELNE 122
           + V     +   ++ G A  G + + + +   + E     +VV   +++    + G +++
Sbjct: 470 QRVKPDKFTVVTLLTGCAQLGALEQGKWIHGYLDENRITMDVVVGTALIEMYSKCGCVDK 529

Query: 123 ARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEME----ERNVVTWTSMISGYCR 178
           + ++F  +  K+  SW ++I G        EA+ LF EME    + + +T+  ++S    
Sbjct: 530 SLEIFYELEDKDTASWTSIICGLAMNGKTSEALRLFSEMERVGAKPDDITFIGVLSACSH 589

Query: 179 AGEVEEGYCLFRRMPR 194
            G VEEG   F  M +
Sbjct: 590 GGLVEEGRRFFNSMKK 605



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 39/133 (29%), Positives = 69/133 (51%), Gaps = 9/133 (6%)

Query: 11  VVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEM-- 68
           VV  T+ I  YSK G +D++  +F  +  ++  S+ +++ G   NG+ SEA RLF EM  
Sbjct: 511 VVVGTALIEMYSKCGCVDKSLEIFYELEDKDTASWTSIICGLAMNGKTSEALRLFSEMER 570

Query: 69  --PERNVVSWTAMICGLADAGRVCEARKLFEEMP-----ERNVVSWNSMVVGLIRNGELN 121
              + + +++  ++   +  G V E R+ F  M      E  V  +  ++  L R G L+
Sbjct: 571 VGAKPDDITFIGVLSACSHGGLVEEGRRFFNSMKKVHRIEPKVEHYGCVIDLLGRAGLLD 630

Query: 122 EARKVFNSMPIKN 134
           EA ++   +PI+N
Sbjct: 631 EAEELIQEIPIEN 643


>gi|297727555|ref|NP_001176141.1| Os10g0400250 [Oryza sativa Japonica Group]
 gi|13940614|gb|AAK50416.1|AC021891_17 Putative selenium-binding protein-like [Oryza sativa Japonica
           Group]
 gi|31431939|gb|AAP53645.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
 gi|125574711|gb|EAZ15995.1| hypothetical protein OsJ_31439 [Oryza sativa Japonica Group]
 gi|255679385|dbj|BAH94869.1| Os10g0400250 [Oryza sativa Japonica Group]
          Length = 651

 Score =  298 bits (762), Expect = 8e-78,   Method: Compositional matrix adjust.
 Identities = 165/444 (37%), Positives = 254/444 (57%), Gaps = 6/444 (1%)

Query: 151 MGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVV---SWTAMIGGF 207
           M +A  LF+    R++V+W ++I GY R G   E   LF RM  ++ V       MI   
Sbjct: 176 MEDARRLFDRSPVRDLVSWNTLIGGYVRRGNPAEALELFWRMVAEDAVVRPDEVTMIAAV 235

Query: 208 AWNGFHKESLLLFIEMKGICD-NGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDE 266
           +  G  ++ L L   + G  D +G +C V+  N++++ YI+ G LE A+++F+ +  R  
Sbjct: 236 SGCGQMRD-LELGRRLHGFVDSDGVSCTVRLMNALMDMYIKCGSLEMAKSVFERIEHRTV 294

Query: 267 ISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAH 326
           +SWT+MI G+   G + +A  +F  MP+RD   W A+++G VQ +   EA  LF EM+  
Sbjct: 295 VSWTTMIVGFAKFGLMDDARKVFDEMPERDVFPWNALMTGYVQCKQCKEALSLFHEMQEA 354

Query: 327 GVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNA 386
            V P   T   L  A      +++G  +H  + K      + L   LI MYAKCG I+ A
Sbjct: 355 SVVPDEITMVNLLTACSQLGALEMGMWVHRYIEKHRLVFSVALGTSLIDMYAKCGNIEKA 414

Query: 387 YNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHA 446
            +IF  +  ++ ++W +M+ G ++HG ANE ++ F +M+E G  P+ +TF+G+LSAC HA
Sbjct: 415 IHIFKEIPEKNALTWTAMICGLANHGHANEAIEHFRTMIELGQKPDEITFIGVLSACCHA 474

Query: 447 GLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGA 506
           GLV  G E F+ M   Y ++   +HY  MI+LLGRAG + EAE+ V  +P EPD  +WGA
Sbjct: 475 GLVKEGREFFSLMETKYHLERKMKHYSCMIDLLGRAGHLDEAEQLVNTMPMEPDAVVWGA 534

Query: 507 LLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKG 566
           +  AC   +GN  + E AA +L+E+DP ++  +V+L N+YA +    +  K+R  M   G
Sbjct: 535 IFFACRM-QGNISLGEKAAMKLVEIDPSDSGIYVLLANMYAEANMRKKADKVRAMMRHLG 593

Query: 567 VRKVPGCSWLMRNGGIQMFLSGDK 590
           V KVPGCS +  NG +  F+  DK
Sbjct: 594 VEKVPGCSCIELNGVVHEFIVKDK 617



 Score =  141 bits (356), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 115/411 (27%), Positives = 190/411 (46%), Gaps = 26/411 (6%)

Query: 14  LTSSITKYSKRGFIDEAKA-LFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERN 72
           L  +  +  + G+ D A A + +L    +V   NA        G + +ARRLF+  P R+
Sbjct: 131 LLKACARLREWGYGDAALAHVLRLGLDSDVFVVNAATHFLSIRGPMEDARRLFDRSPVRD 190

Query: 73  VVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVV--------GLIRNGELNEAR 124
           +VSW  +I G    G   EA +LF  M   + V     V         G +R+ EL    
Sbjct: 191 LVSWNTLIGGYVRRGNPAEALELFWRMVAEDAVVRPDEVTMIAAVSGCGQMRDLELGRRL 250

Query: 125 KVF-NSMPIKNVISW-NAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEV 182
             F +S  +   +   NA++  Y++C  +  A  +FE +E R VV+WT+MI G+ + G +
Sbjct: 251 HGFVDSDGVSCTVRLMNALMDMYIKCGSLEMAKSVFERIEHRTVVSWTTMIVGFAKFGLM 310

Query: 183 EEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKG---ICDNGNNCNVQSCN 239
           ++   +F  MP ++V  W A++ G+      KE+L LF EM+    + D     N+ +  
Sbjct: 311 DDARKVFDEMPERDVFPWNALMTGYVQCKQCKEALSLFHEMQEASVVPDEITMVNLLTAC 370

Query: 240 SMINGYIRFG----RLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDR 295
           S + G +  G    R  E   L  +V +      TS+ID Y   G +  A ++F  +P++
Sbjct: 371 SQL-GALEMGMWVHRYIEKHRLVFSVAL-----GTSLIDMYAKCGNIEKAIHIFKEIPEK 424

Query: 296 DAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIH 355
           +A+ WTAMI GL  +    EA   F  M   G  P   TF  +  A      +  GR+  
Sbjct: 425 NALTWTAMICGLANHGHANEAIEHFRTMIELGQKPDEITFIGVLSACCHAGLVKEGREFF 484

Query: 356 CVL-MKTESESDLILENCLISMYAKCGVIDNAYNIFSNM-VSRDLVSWNSM 404
            ++  K   E  +   +C+I +  + G +D A  + + M +  D V W ++
Sbjct: 485 SLMETKYHLERKMKHYSCMIDLLGRAGHLDEAEQLVNTMPMEPDAVVWGAI 535



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 80/316 (25%), Positives = 135/316 (42%), Gaps = 67/316 (21%)

Query: 249 GRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLV 308
           G +E+A+ LFD  PVRD +SW ++I GY+  G  + A  LF  M   DAV          
Sbjct: 174 GPMEDARRLFDRSPVRDLVSWNTLIGGYVRRGNPAEALELFWRMVAEDAV---------- 223

Query: 309 QNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLI 368
                              V P   T        G   +++LGR++H  +        + 
Sbjct: 224 -------------------VRPDEVTMIAAVSGCGQMRDLELGRRLHGFVDSDGVSCTVR 264

Query: 369 LENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFE------ 422
           L N L+ MY KCG ++ A ++F  +  R +VSW +M++GF+  GL ++  KVF+      
Sbjct: 265 LMNALMDMYIKCGSLEMAKSVFERIEHRTVVSWTTMIVGFAKFGLMDDARKVFDEMPERD 324

Query: 423 -------------------------SMLESGTHPNSVTFLGILSACSHAGLVSRG-WELF 456
                                     M E+   P+ +T + +L+ACS  G +  G W   
Sbjct: 325 VFPWNALMTGYVQCKQCKEALSLFHEMQEASVVPDEITMVNLLTACSQLGALEMGMW--V 382

Query: 457 NAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFC-E 515
           +   + +++        S+I++  + G I++A      +P E +   W A++  CG    
Sbjct: 383 HRYIEKHRLVFSVALGTSLIDMYAKCGNIEKAIHIFKEIP-EKNALTWTAMI--CGLANH 439

Query: 516 GNAEIAEHAAKRLLEL 531
           G+A  A    + ++EL
Sbjct: 440 GHANEAIEHFRTMIEL 455



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 65/288 (22%), Positives = 114/288 (39%), Gaps = 52/288 (18%)

Query: 323 MRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGV 382
           +R+    P + TF  L  A         G      +++   +SD+ + N      +  G 
Sbjct: 116 LRSGTARPDHLTFPFLLKACARLREWGYGDAALAHVLRLGLDSDVFVVNAATHFLSIRGP 175

Query: 383 IDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESML--ESGTHPNSVTFLGIL 440
           +++A  +F     RDLVSWN+++ G+   G   E L++F  M+  ++   P+ VT +  +
Sbjct: 176 MEDARRLFDRSPVRDLVSWNTLIGGYVRRGNPAEALELFWRMVAEDAVVRPDEVTMIAAV 235

Query: 441 SACS-----------HAGLVSRG----WELFNAMFDVYKIQPGP-----------EH--- 471
           S C            H  + S G      L NA+ D+Y I+ G            EH   
Sbjct: 236 SGCGQMRDLELGRRLHGFVDSDGVSCTVRLMNALMDMY-IKCGSLEMAKSVFERIEHRTV 294

Query: 472 --YVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLL 529
             + +MI    + G + +A +    +P E D   W AL+     C+   E    A     
Sbjct: 295 VSWTTMIVGFAKFGLMDDARKVFDEMP-ERDVFPWNALMTGYVQCKQCKE----ALSLFH 349

Query: 530 ELDPLN-APAHVVLCNIYAASG------------RHVEEHKLRMDMGL 564
           E+   +  P  + + N+  A              R++E+H+L   + L
Sbjct: 350 EMQEASVVPDEITMVNLLTACSQLGALEMGMWVHRYIEKHRLVFSVAL 397


>gi|328774751|gb|AEB39775.1| pentatricopeptide repeat protein 71 [Funaria hygrometrica]
          Length = 837

 Score =  297 bits (761), Expect = 9e-78,   Method: Compositional matrix adjust.
 Identities = 199/640 (31%), Positives = 323/640 (50%), Gaps = 57/640 (8%)

Query: 11  VVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEA----RRLFE 66
           +  L + I  +S  G + EA+  F  +  + VV++NA+++G+ Q G + EA    R++ +
Sbjct: 96  IYELNTLIKLHSICGNMLEARQTFDSVENKTVVTWNAIIAGYAQLGHVKEAFALFRQMVD 155

Query: 67  EMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVS----WNSMVVGLIRNGELNE 122
           E  E +++++  ++   +    +   ++   ++ +   VS      ++V   ++ G ++ 
Sbjct: 156 EAMEPSIITFLIVLDACSSPAGLKLGKEFHAQVIKVGFVSDFRIGTALVSMYVKGGSMDG 215

Query: 123 ARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEER------------------ 164
           AR+VF+ +  ++V ++N MI GY +     +A  LF  M++                   
Sbjct: 216 ARQVFDGLYKRDVSTFNVMIGGYAKSGDGEKAFQLFYRMQQEGFKPNRISFLSILDGCST 275

Query: 165 ---------------------NVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAM 203
                                +V   T++I  Y   G +E    +F +M  ++VVSWT M
Sbjct: 276 PEALAWGKAVHAQCMNTGLVDDVRVATALIRMYMGCGSIEGARRVFDKMKVRDVVSWTVM 335

Query: 204 IGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPV 263
           I G+A N   +++  LF  M+   + G   +  +   +IN       L  A+ +   V V
Sbjct: 336 IRGYAENSNIEDAFGLFATMQ---EEGIQPDRITYIHIINACASSADLSLAREIHSQV-V 391

Query: 264 R-----DEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATY 318
           R     D +  T+++  Y   G + +A  +F  M  RD V+W+AMI   V+N    EA  
Sbjct: 392 RAGFGTDLLVDTALVHMYAKCGAIKDARQVFDAMSRRDVVSWSAMIGAYVENGCGEEAFE 451

Query: 319 LFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYA 378
            F  M+ + V P   T+  L  A G    +DLG +I+   +K +  S + + N LI+M  
Sbjct: 452 TFHLMKRNNVEPDVVTYINLLNACGHLGALDLGMEIYTQAIKADLVSHIPVGNALINMNV 511

Query: 379 KCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLG 438
           K G I+ A  IF NMV RD+V+WN M+ G+S HG A E L +F+ ML+    PNSVTF+G
Sbjct: 512 KHGSIERARYIFENMVQRDVVTWNVMIGGYSLHGNAREALDLFDRMLKERFRPNSVTFVG 571

Query: 439 ILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFE 498
           +LSACS AG V  G   F+ + D   I P  E Y  M++LLGRAG++ EAE  + R+P +
Sbjct: 572 VLSACSRAGFVEEGRRFFSYLLDGRGIVPTMELYGCMVDLLGRAGELDEAELLINRMPLK 631

Query: 499 PDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKL 558
           P+  IW  LL AC    GN ++AE AA+R L  +P +   +V L ++YAA+G      K+
Sbjct: 632 PNSSIWSTLLAACRI-YGNLDVAERAAERCLMSEPYDGAVYVQLSHMYAAAGMWENVAKV 690

Query: 559 RMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
           R  M  +GVRK  GC+W+   G +  F+  D+   Q  EI
Sbjct: 691 RKVMESRGVRKEQGCTWIEVEGKLHTFVVEDRSHPQAGEI 730



 Score =  191 bits (486), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 143/536 (26%), Positives = 251/536 (46%), Gaps = 56/536 (10%)

Query: 83  LADAGRVCEARK-LFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAM 141
           L DAG   + R  + +   + N+   N+++      G + EAR+ F+S+  K V++WNA+
Sbjct: 74  LRDAGLGKQVRDHIIQSGRQLNIYELNTLIKLHSICGNMLEARQTFDSVENKTVVTWNAI 133

Query: 142 IAGYVECCMMGEAIVLFEEM----EERNVVTW---------------------------- 169
           IAGY +   + EA  LF +M     E +++T+                            
Sbjct: 134 IAGYAQLGHVKEAFALFRQMVDEAMEPSIITFLIVLDACSSPAGLKLGKEFHAQVIKVGF 193

Query: 170 -------TSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIE 222
                  T+++S Y + G ++    +F  + +++V ++  MIGG+A +G  +++  LF  
Sbjct: 194 VSDFRIGTALVSMYVKGGSMDGARQVFDGLYKRDVSTFNVMIGGYAKSGDGEKAFQLFYR 253

Query: 223 MKGICDNGNNCNVQSCNSMING-----YIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYL 277
           M+     G   N  S  S+++G      + +G+   AQ + +T  V D    T++I  Y+
Sbjct: 254 MQ---QEGFKPNRISFLSILDGCSTPEALAWGKAVHAQCM-NTGLVDDVRVATALIRMYM 309

Query: 278 SVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSV 337
             G +  A  +F  M  RD V+WT MI G  +N    +A  LF  M+  G+ P   T+  
Sbjct: 310 GCGSIEGARRVFDKMKVRDVVSWTVMIRGYAENSNIEDAFGLFATMQEEGIQPDRITYIH 369

Query: 338 LFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRD 397
           +  A  ++A++ L R+IH  +++    +DL+++  L+ MYAKCG I +A  +F  M  RD
Sbjct: 370 IINACASSADLSLAREIHSQVVRAGFGTDLLVDTALVHMYAKCGAIKDARQVFDAMSRRD 429

Query: 398 LVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFN 457
           +VSW++M+  +  +G   E  + F  M  +   P+ VT++ +L+AC H G +  G E++ 
Sbjct: 430 VVSWSAMIGAYVENGCGEEAFETFHLMKRNNVEPDVVTYINLLNACGHLGALDLGMEIYT 489

Query: 458 AMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGN 517
                  +   P    ++IN+  + G I+ A  ++     + D   W  ++G      GN
Sbjct: 490 QAIKADLVSHIPVGN-ALINMNVKHGSIERA-RYIFENMVQRDVVTWNVMIGGYSL-HGN 546

Query: 518 AEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGR--HVEEHKLRMDMGLKGVRKVP 571
           A  A     R+L+      P  V    + +A  R   VEE +      L G   VP
Sbjct: 547 AREALDLFDRMLK--ERFRPNSVTFVGVLSACSRAGFVEEGRRFFSYLLDGRGIVP 600



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 32/129 (24%), Positives = 66/129 (51%)

Query: 334 TFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNM 393
           T+  LF       +  LG+Q+   ++++  + ++   N LI +++ CG +  A   F ++
Sbjct: 63  TYVKLFQRCMMLRDAGLGKQVRDHIIQSGRQLNIYELNTLIKLHSICGNMLEARQTFDSV 122

Query: 394 VSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGW 453
            ++ +V+WN+++ G++  G   E   +F  M++    P+ +TFL +L ACS    +  G 
Sbjct: 123 ENKTVVTWNAIIAGYAQLGHVKEAFALFRQMVDEAMEPSIITFLIVLDACSSPAGLKLGK 182

Query: 454 ELFNAMFDV 462
           E    +  V
Sbjct: 183 EFHAQVIKV 191


>gi|449521645|ref|XP_004167840.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31430-like, partial [Cucumis sativus]
          Length = 735

 Score =  297 bits (761), Expect = 9e-78,   Method: Compositional matrix adjust.
 Identities = 181/556 (32%), Positives = 287/556 (51%), Gaps = 15/556 (2%)

Query: 56  GRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEM------PERNVVSWNS 109
           G L  A ++F  + + ++  +  M+   A  G + +   LF+++      P+     +  
Sbjct: 145 GNLRYAEKIFNYVQDPSLFVYNVMVKIYAKRGILRKVLLLFQQLREDGLWPDGFTYPFVL 204

Query: 110 MVVGLIRNGELNEARKVF---NSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNV 166
             +G +R+    E  + F     M + N + +N++I  Y E   +  A  LF+EM  R+ 
Sbjct: 205 KAIGCLRDVRQGEKVRGFIVKTGMDLDNYV-YNSLIDMYYELSNVENAKKLFDEMTTRDS 263

Query: 167 VTWTSMISGYCRAGEVEEGYCLFRRMPRK-NVVSWTAMIGGFAWNGFHKESLLLFIEMKG 225
           V+W  MISGY R    E+    FR M ++ N     A +          ++L L  E+  
Sbjct: 264 VSWNVMISGYVRCRRFEDAINTFREMQQEGNEKPDEATVVSTLSACTALKNLELGDEIHN 323

Query: 226 ICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNA 285
                     +  N++++ Y + G L  A+N+FD + +++ I WTSMI GY++ G +  A
Sbjct: 324 YVRKELGFTTRIDNALLDMYAKCGCLNIARNIFDEMSMKNVICWTSMISGYINCGDLREA 383

Query: 286 YYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGAT 345
             LF   P RD V WTAMI+G VQ   F +A  LF EM+   + P   T   L       
Sbjct: 384 RDLFDKSPVRDVVLWTAMINGYVQFHHFDDAVALFREMQIQKIKPDKFTVVTLLTGCAQL 443

Query: 346 ANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMV 405
             ++ G+ IH  L +     D+++   LI MY+KCG +D +  IF  +  +D  SW S++
Sbjct: 444 GALEQGKWIHGYLDENRITMDVVVGTALIEMYSKCGCVDKSLEIFYELEDKDTASWTSII 503

Query: 406 MGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKI 465
            G + +G  +E L++F  M   G  P+ +TF+G+LSACSH GLV  G   FN+M  V++I
Sbjct: 504 CGLAMNGKTSEALRLFSEMERVGAKPDDITFIGVLSACSHGGLVEEGRRFFNSMKKVHRI 563

Query: 466 QPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRI---WGALLGACGFCEGNAEIAE 522
           +P  EHY  +I+LLGRAG + EAEE +  +P E    +   +GALL AC     N ++ E
Sbjct: 564 EPKVEHYGCVIDLLGRAGLLDEAEELIQEIPIENCEIVVPLYGALLSACRI-HNNVDMGE 622

Query: 523 HAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGI 582
             AK+L  ++  ++  H +L NIYA+  R  +  K+R  M   GV+K+PGCS +  +G +
Sbjct: 623 RLAKKLENIESCDSSIHTLLANIYASVDRWEDAKKVRRKMKELGVKKMPGCSLIEVDGIV 682

Query: 583 QMFLSGDKIPAQVAEI 598
             FL GD    ++ EI
Sbjct: 683 HEFLVGDPSHPEMIEI 698



 Score =  146 bits (368), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 106/357 (29%), Positives = 170/357 (47%), Gaps = 20/357 (5%)

Query: 45  YNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEM----- 99
           YN+++  + +   +  A++LF+EM  R+ VSW  MI G     R  +A   F EM     
Sbjct: 235 YNSLIDMYYELSNVENAKKLFDEMTTRDSVSWNVMISGYVRCRRFEDAINTFREMQQEGN 294

Query: 100 ---PERNVVSWNSMVVGLIRNGELNEA--RKVFNSMPIKNVISWNAMIAGYVECCMMGEA 154
               E  VVS  S    L +N EL +     V   +     I  NA++  Y +C  +  A
Sbjct: 295 EKPDEATVVSTLSACTAL-KNLELGDEIHNYVRKELGFTTRID-NALLDMYAKCGCLNIA 352

Query: 155 IVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHK 214
             +F+EM  +NV+ WTSMISGY   G++ E   LF + P ++VV WTAMI G+       
Sbjct: 353 RNIFDEMSMKNVICWTSMISGYINCGDLREARDLFDKSPVRDVVLWTAMINGYVQFHHFD 412

Query: 215 ESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQ----NLFDTVPVRDEISWT 270
           +++ LF EM+      +   V    +++ G  + G LE+ +     L +     D +  T
Sbjct: 413 DAVALFREMQIQKIKPDKFTVV---TLLTGCAQLGALEQGKWIHGYLDENRITMDVVVGT 469

Query: 271 SMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPP 330
           ++I+ Y   G V  +  +F+ + D+D  +WT++I GL  N    EA  LF EM   G  P
Sbjct: 470 ALIEMYSKCGCVDKSLEIFYELEDKDTASWTSIICGLAMNGKTSEALRLFSEMERVGAKP 529

Query: 331 LNATFSVLFGAAGATANIDLGRQIHCVLMKTES-ESDLILENCLISMYAKCGVIDNA 386
            + TF  +  A      ++ GR+    + K    E  +    C+I +  + G++D A
Sbjct: 530 DDITFIGVLSACSHGGLVEEGRRFFNSMKKVHRIEPKVEHYGCVIDLLGRAGLLDEA 586



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 109/434 (25%), Positives = 185/434 (42%), Gaps = 64/434 (14%)

Query: 16  SSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEM------- 68
           S I  Y +   ++ AK LF  M  R+ VS+N M+SG+++  R  +A   F EM       
Sbjct: 237 SLIDMYYELSNVENAKKLFDEMTTRDSVSWNVMISGYVRCRRFEDAINTFREMQQEGNEK 296

Query: 69  PERNVVSWTAMICG--------------------------------LADAGRVCEARKLF 96
           P+   V  T   C                                  A  G +  AR +F
Sbjct: 297 PDEATVVSTLSACTALKNLELGDEIHNYVRKELGFTTRIDNALLDMYAKCGCLNIARNIF 356

Query: 97  EEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIV 156
           +EM  +NV+ W SM+ G I  G+L EAR +F+  P+++V+ W AMI GYV+     +A+ 
Sbjct: 357 DEMSMKNVICWTSMISGYINCGDLREARDLFDKSPVRDVVLWTAMINGYVQFHHFDDAVA 416

Query: 157 LFEEMEERNV----VTWTSMISGYCRAGEVEEGYCLFRRMPRK----NVVSWTAMIGGFA 208
           LF EM+ + +     T  ++++G  + G +E+G  +   +       +VV  TA+I  ++
Sbjct: 417 LFREMQIQKIKPDKFTVVTLLTGCAQLGALEQGKWIHGYLDENRITMDVVVGTALIEMYS 476

Query: 209 WNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTV----PVR 264
             G   +SL +F E++       + +  S  S+I G    G+  EA  LF  +       
Sbjct: 477 KCGCVDKSLEIFYELE-------DKDTASWTSIICGLAMNGKTSEALRLFSEMERVGAKP 529

Query: 265 DEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVA-----WTAMISGLVQNELFVEATYL 319
           D+I++  ++      G V      F++M     +      +  +I  L +  L  EA  L
Sbjct: 530 DDITFIGVLSACSHGGLVEEGRRFFNSMKKVHRIEPKVEHYGCVIDLLGRAGLLDEAEEL 589

Query: 320 FMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAK 379
             E+       +   +  L  A     N+D+G ++   L   ES  D  +   L ++YA 
Sbjct: 590 IQEIPIENCEIVVPLYGALLSACRIHNNVDMGERLAKKLENIES-CDSSIHTLLANIYAS 648

Query: 380 CGVIDNAYNIFSNM 393
               ++A  +   M
Sbjct: 649 VDRWEDAKKVRRKM 662



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 55/228 (24%), Positives = 102/228 (44%), Gaps = 4/228 (1%)

Query: 234 NVQSCNSMINGYIRFGRLEEAQNLFDTVPV---RDEISWTSMIDGYLSVGQVSNAYYLFH 290
           N +SC   +       +L++ Q+    + +   RD I+         S+G +  A  +F+
Sbjct: 96  NKKSCIECLRNCKSMDQLKQIQSQIFRIGLEGDRDTINKLMAFCADSSLGNLRYAEKIFN 155

Query: 291 NMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDL 350
            + D     +  M+    +  +  +   LF ++R  G+ P   T+  +  A G   ++  
Sbjct: 156 YVQDPSLFVYNVMVKIYAKRGILRKVLLLFQQLREDGLWPDGFTYPFVLKAIGCLRDVRQ 215

Query: 351 GRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSH 410
           G ++   ++KT  + D  + N LI MY +   ++NA  +F  M +RD VSWN M+ G+  
Sbjct: 216 GEKVRGFIVKTGMDLDNYVYNSLIDMYYELSNVENAKKLFDEMTTRDSVSWNVMISGYVR 275

Query: 411 HGLANETLKVFESMLESGTH-PNSVTFLGILSACSHAGLVSRGWELFN 457
                + +  F  M + G   P+  T +  LSAC+    +  G E+ N
Sbjct: 276 CRRFEDAINTFREMQQEGNEKPDEATVVSTLSACTALKNLELGDEIHN 323



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 54/198 (27%), Positives = 97/198 (48%), Gaps = 16/198 (8%)

Query: 11  VVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEM-- 68
           V+  TS I+ Y   G + EA+ LF   P R+VV + AM++G++Q     +A  LF EM  
Sbjct: 364 VICWTSMISGYINCGDLREARDLFDKSPVRDVVLWTAMINGYVQFHHFDDAVALFREMQI 423

Query: 69  ----PERNVVSWTAMICGLADAGRVCEARKLFEEMPER----NVVSWNSMVVGLIRNGEL 120
               P++  V    ++ G A  G + + + +   + E     +VV   +++    + G +
Sbjct: 424 QKIKPDKFTV--VTLLTGCAQLGALEQGKWIHGYLDENRITMDVVVGTALIEMYSKCGCV 481

Query: 121 NEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEME----ERNVVTWTSMISGY 176
           +++ ++F  +  K+  SW ++I G        EA+ LF EME    + + +T+  ++S  
Sbjct: 482 DKSLEIFYELEDKDTASWTSIICGLAMNGKTSEALRLFSEMERVGAKPDDITFIGVLSAC 541

Query: 177 CRAGEVEEGYCLFRRMPR 194
              G VEEG   F  M +
Sbjct: 542 SHGGLVEEGRRFFNSMKK 559



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/133 (29%), Positives = 69/133 (51%), Gaps = 9/133 (6%)

Query: 11  VVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEM-- 68
           VV  T+ I  YSK G +D++  +F  +  ++  S+ +++ G   NG+ SEA RLF EM  
Sbjct: 465 VVVGTALIEMYSKCGCVDKSLEIFYELEDKDTASWTSIICGLAMNGKTSEALRLFSEMER 524

Query: 69  --PERNVVSWTAMICGLADAGRVCEARKLFEEMP-----ERNVVSWNSMVVGLIRNGELN 121
              + + +++  ++   +  G V E R+ F  M      E  V  +  ++  L R G L+
Sbjct: 525 VGAKPDDITFIGVLSACSHGGLVEEGRRFFNSMKKVHRIEPKVEHYGCVIDLLGRAGLLD 584

Query: 122 EARKVFNSMPIKN 134
           EA ++   +PI+N
Sbjct: 585 EAEELIQEIPIEN 597


>gi|359482660|ref|XP_002285225.2| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
           chloroplastic-like [Vitis vinifera]
          Length = 872

 Score =  297 bits (761), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 194/635 (30%), Positives = 314/635 (49%), Gaps = 88/635 (13%)

Query: 46  NAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMP----- 100
           NA+LS F++ G L EA  +F +M ER++ SW  ++ G A AG   EA  L+  M      
Sbjct: 133 NALLSMFVRFGDLVEAWYVFGKMAERDLFSWNVLVGGYAKAGYFDEALNLYHRMLWVGIR 192

Query: 101 ----------------------------------ERNVVSWNSMVVGLIRNGELNEARKV 126
                                             E +V   N+++   ++ G++  AR V
Sbjct: 193 PDVYTFPCVLRTCGGLPDLARGREVHLHVIRYGFESDVDVVNALITMYVKCGDIFSARLV 252

Query: 127 FNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEE----RNVVTWTSMIS-----GYC 177
           F+ MP ++ ISWNAMI+GY E  +  E + LF  M E     +++T TS+IS     G  
Sbjct: 253 FDRMPRRDRISWNAMISGYFENDVCLEGLRLFFMMREFFVDPDLMTMTSVISACEALGDE 312

Query: 178 RAGEVEEGYCL------------------------------FRRMPRKNVVSWTAMIGGF 207
           R G    GY +                              F +M  K++VSWTAMI G+
Sbjct: 313 RLGREVHGYVIKTGFVAEVSVNNSLIQMHSSVGCWDEAEMVFSKMEFKDLVSWTAMISGY 372

Query: 208 AWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEI 267
             NG  ++++  +  M+      +   + S  S   G    G L++   L +        
Sbjct: 373 EKNGLPEKAVETYTIMEHEGVVPDEITIASVLSACAG---LGLLDKGIMLHEFADRTGLT 429

Query: 268 SWT----SMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEM 323
           S+     S+ID Y     +  A  +FH +P+++ ++WT++I GL  N    EA + F +M
Sbjct: 430 SYVIVANSLIDMYSKCRCIDKALEVFHRIPNKNVISWTSIILGLRLNYRSFEALFFFQQM 489

Query: 324 RAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVI 383
               + P + T   +  A      +  G++IH   ++T    D  L N L+ MY +CG +
Sbjct: 490 -ILSLKPNSVTLVSVLSACARIGALSCGKEIHAHALRTGLGFDGFLPNALLDMYVRCGRM 548

Query: 384 DNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSAC 443
           + A+N F N   +D+ SWN ++ G++  G     +++F  M+ES  +P+ +TF  +L AC
Sbjct: 549 EPAWNQF-NSCEKDVASWNILLTGYAQQGKGGLAVELFHKMIESDVNPDEITFTSLLCAC 607

Query: 444 SHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRI 503
           S +G+V+ G E F +M   + I P  +HY S+++LLGRAG++++A EF+ ++P +PD  I
Sbjct: 608 SRSGMVTDGLEYFESMEHKFHIAPNLKHYASVVDLLGRAGRLEDAYEFIKKMPIDPDPAI 667

Query: 504 WGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMG 563
           WGALL AC   + N E+ E AA+ + E+D  +   +++LCN+YA SG+  E  ++R  M 
Sbjct: 668 WGALLNACRIYQ-NVELGELAAQHIFEMDTKSVGYYILLCNLYADSGKWDEVARVRKIMR 726

Query: 564 LKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
              +   PGCSW+   G +  FL+GD    Q+ EI
Sbjct: 727 ENRLTVDPGCSWVEVAGQVHAFLTGDDFHPQIKEI 761



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 90/347 (25%), Positives = 153/347 (44%), Gaps = 54/347 (15%)

Query: 16  SSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVS 75
           S I  +S  G  DEA+ +F  M  +++VS+ AM+SG+ +NG   +A   +  M    VV 
Sbjct: 336 SLIQMHSSVGCWDEAEMVFSKMEFKDLVSWTAMISGYEKNGLPEKAVETYTIMEHEGVVP 395

Query: 76  WTAMICGLADAGR---VCEARKLFEEMPERN-----VVSWNSMVVGLIRNGELNEARKVF 127
               I  +  A     + +   +  E  +R      V+  NS++    +   +++A +VF
Sbjct: 396 DEITIASVLSACAGLGLLDKGIMLHEFADRTGLTSYVIVANSLIDMYSKCRCIDKALEVF 455

Query: 128 NSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEM---EERNVVTWTSMISGYCRAGEVEE 184
           + +P KNVISW ++I G        EA+  F++M    + N VT  S++S   R G +  
Sbjct: 456 HRIPNKNVISWTSIILGLRLNYRSFEALFFFQQMILSLKPNSVTLVSVLSACARIGALSC 515

Query: 185 GYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMING 244
           G            +   A+  G  ++GF                          N++++ 
Sbjct: 516 G----------KEIHAHALRTGLGFDGFLP------------------------NALLDM 541

Query: 245 YIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDA----VAW 300
           Y+R GR+E A N F++   +D  SW  ++ GY   G+   A  LFH M + D     + +
Sbjct: 542 YVRCGRMEPAWNQFNSCE-KDVASWNILLTGYAQQGKGGLAVELFHKMIESDVNPDEITF 600

Query: 301 TAMISGLVQNELFVEATYLF--MEMRAHGVPPLNATFSV--LFGAAG 343
           T+++    ++ +  +    F  ME + H  P L    SV  L G AG
Sbjct: 601 TSLLCACSRSGMVTDGLEYFESMEHKFHIAPNLKHYASVVDLLGRAG 647



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 71/287 (24%), Positives = 125/287 (43%), Gaps = 46/287 (16%)

Query: 1   MSERNHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSE 60
            ++R    S V+   S I  YSK   ID+A  +F  +P +NV+S+ +++ G   N R  E
Sbjct: 422 FADRTGLTSYVIVANSLIDMYSKCRCIDKALEVFHRIPNKNVISWTSIILGLRLNYRSFE 481

Query: 61  ARRLFEEMP---ERNVVSWTAMICGLADAGRVCEARKLFEEMPERNV----VSWNSMVVG 113
           A   F++M    + N V+  +++   A  G +   +++        +       N+++  
Sbjct: 482 ALFFFQQMILSLKPNSVTLVSVLSACARIGALSCGKEIHAHALRTGLGFDGFLPNALLDM 541

Query: 114 LIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNV----VTW 169
            +R G +  A   FNS   K+V SWN ++ GY +    G A+ LF +M E +V    +T+
Sbjct: 542 YVRCGRMEPAWNQFNSCE-KDVASWNILLTGYAQQGKGGLAVELFHKMIESDVNPDEITF 600

Query: 170 TSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDN 229
           TS++    R+G V +G   F  M  K                FH                
Sbjct: 601 TSLLCACSRSGMVTDGLEYFESMEHK----------------FHIAP------------- 631

Query: 230 GNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVR-DEISWTSMIDG 275
               N++   S+++   R GRLE+A      +P+  D   W ++++ 
Sbjct: 632 ----NLKHYASVVDLLGRAGRLEDAYEFIKKMPIDPDPAIWGALLNA 674



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 49/162 (30%), Positives = 80/162 (49%), Gaps = 10/162 (6%)

Query: 351 GRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSH 410
           G ++H  + KT +   + L N L+SM+ + G +  A+ +F  M  RDL SWN +V G++ 
Sbjct: 113 GSRVHSYVSKTVTRLGVRLGNALLSMFVRFGDLVEAWYVFGKMAERDLFSWNVLVGGYAK 172

Query: 411 HGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPE 470
            G  +E L ++  ML  G  P+  TF  +L  C     ++RG E+      ++ I+ G E
Sbjct: 173 AGYFDEALNLYHRMLWVGIRPDVYTFPCVLRTCGGLPDLARGREV-----HLHVIRYGFE 227

Query: 471 HYVSMINLL----GRAGKIKEAEEFVLRLPFEPDHRIWGALL 508
             V ++N L     + G I  A     R+P   D   W A++
Sbjct: 228 SDVDVVNALITMYVKCGDIFSARLVFDRMP-RRDRISWNAMI 268


>gi|356561853|ref|XP_003549191.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Glycine max]
          Length = 748

 Score =  297 bits (761), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 175/508 (34%), Positives = 278/508 (54%), Gaps = 41/508 (8%)

Query: 132 IKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRR 191
           + + I  +++   Y++C  + +A  LF+ M +R+VV W++MI+GY R G VEE   LF  
Sbjct: 136 LTDSIVASSLTHMYLKCDRILDARKLFDRMPDRDVVVWSAMIAGYSRLGLVEEAKELFGE 195

Query: 192 MP----RKNVVSWTAMIGGFAWNGFHKESLLLFIEM--KGICDNGN--NCNVQSC----- 238
           M       N+VSW  M+ GF  NGF+ E++ +F  M  +G   +G+  +C + +      
Sbjct: 196 MRSGGVEPNLVSWNGMLAGFGNNGFYDEAVGMFRMMLVQGFWPDGSTVSCVLPAVGCLED 255

Query: 239 -----------------------NSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDG 275
                                  ++M++ Y + G ++E   +FD V   +  S  + + G
Sbjct: 256 VVVGAQVHGYVIKQGLGSDKFVVSAMLDMYGKCGCVKEMSRVFDEVEEMEIGSLNAFLTG 315

Query: 276 YLSVGQVSNAYYLFHNMPDR----DAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPL 331
               G V  A  +F+   D+    + V WT++I+   QN   +EA  LF +M+A+GV P 
Sbjct: 316 LSRNGMVDTALEVFNKFKDQKMELNVVTWTSIIASCSQNGKDLEALELFRDMQAYGVEPN 375

Query: 332 NATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFS 391
             T   L  A G  + +  G++IHC  ++     D+ + + LI MYAKCG I  A   F 
Sbjct: 376 AVTIPSLIPACGNISALMHGKEIHCFSLRRGIFDDVYVGSALIDMYAKCGRIQLARRCFD 435

Query: 392 NMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSR 451
            M + +LVSWN+++ G++ HG A ET+++F  ML+SG  P+ VTF  +LSAC+  GL   
Sbjct: 436 KMSALNLVSWNAVMKGYAMHGKAKETMEMFHMMLQSGQKPDLVTFTCVLSACAQNGLTEE 495

Query: 452 GWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGAC 511
           GW  +N+M + + I+P  EHY  ++ LL R GK++EA   +  +PFEPD  +WGALL +C
Sbjct: 496 GWRCYNSMSEEHGIEPKMEHYACLVTLLSRVGKLEEAYSIIKEMPFEPDACVWGALLSSC 555

Query: 512 GFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVP 571
                N  + E AA++L  L+P N   +++L NIYA+ G   EE+++R  M  KG+RK P
Sbjct: 556 RV-HNNLSLGEIAAEKLFFLEPTNPGNYILLSNIYASKGLWDEENRIREVMKSKGLRKNP 614

Query: 572 GCSWLMRNGGIQMFLSGDKIPAQVAEIL 599
           G SW+     + M L+GD+   Q+ +IL
Sbjct: 615 GYSWIEVGHKVHMLLAGDQSHPQMKDIL 642



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 106/412 (25%), Positives = 181/412 (43%), Gaps = 66/412 (16%)

Query: 52  FLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMP----ERNVVSW 107
           +L+  R+ +AR+LF+ MP+R+VV W+AMI G +  G V EA++LF EM     E N+VSW
Sbjct: 149 YLKCDRILDARKLFDRMPDRDVVVWSAMIAGYSRLGLVEEAKELFGEMRSGGVEPNLVSW 208

Query: 108 NSMVVGLIRNGELNEARKVFNSM------PIKNVISW----------------------- 138
           N M+ G   NG  +EA  +F  M      P  + +S                        
Sbjct: 209 NGMLAGFGNNGFYDEAVGMFRMMLVQGFWPDGSTVSCVLPAVGCLEDVVVGAQVHGYVIK 268

Query: 139 ----------NAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCL 188
                     +AM+  Y +C  + E   +F+E+EE  + +  + ++G  R G V+    +
Sbjct: 269 QGLGSDKFVVSAMLDMYGKCGCVKEMSRVFDEVEEMEIGSLNAFLTGLSRNGMVDTALEV 328

Query: 189 FRRMPRK----NVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMING 244
           F +   +    NVV+WT++I   + NG   E+L LF +M+     G   N  +  S+I  
Sbjct: 329 FNKFKDQKMELNVVTWTSIIASCSQNGKDLEALELFRDMQAY---GVEPNAVTIPSLIPA 385

Query: 245 YIRFGRLEEAQN---------LFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDR 295
                 L   +          +FD V V      +++ID Y   G++  A   F  M   
Sbjct: 386 CGNISALMHGKEIHCFSLRRGIFDDVYV-----GSALIDMYAKCGRIQLARRCFDKMSAL 440

Query: 296 DAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIH 355
           + V+W A++ G   +    E   +F  M   G  P   TF+ +  A       + G + +
Sbjct: 441 NLVSWNAVMKGYAMHGKAKETMEMFHMMLQSGQKPDLVTFTCVLSACAQNGLTEEGWRCY 500

Query: 356 CVLMKTES-ESDLILENCLISMYAKCGVIDNAYNIFSNM-VSRDLVSWNSMV 405
             + +    E  +    CL+++ ++ G ++ AY+I   M    D   W +++
Sbjct: 501 NSMSEEHGIEPKMEHYACLVTLLSRVGKLEEAYSIIKEMPFEPDACVWGALL 552



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 100/399 (25%), Positives = 167/399 (41%), Gaps = 96/399 (24%)

Query: 7   PKSLVVHLTSSITKYSKRGFIDEAKALFQLMP----QRNVVSYNAMLSGFLQNGRLSEAR 62
           P   VV  ++ I  YS+ G ++EAK LF  M     + N+VS+N ML+GF  NG   EA 
Sbjct: 166 PDRDVVVWSAMIAGYSRLGLVEEAKELFGEMRSGGVEPNLVSWNGMLAGFGNNGFYDEAV 225

Query: 63  RLFEEM------PERNVVSW---------------------------------TAMICGL 83
            +F  M      P+ + VS                                  +AM+   
Sbjct: 226 GMFRMMLVQGFWPDGSTVSCVLPAVGCLEDVVVGAQVHGYVIKQGLGSDKFVVSAMLDMY 285

Query: 84  ADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIK----NVISWN 139
              G V E  ++F+E+ E  + S N+ + GL RNG ++ A +VFN    +    NV++W 
Sbjct: 286 GKCGCVKEMSRVFDEVEEMEIGSLNAFLTGLSRNGMVDTALEVFNKFKDQKMELNVVTWT 345

Query: 140 AMIAGYVECCMMGEAIVLFEEME----ERNVVTWTSMISG-------------------- 175
           ++IA   +     EA+ LF +M+    E N VT  S+I                      
Sbjct: 346 SIIASCSQNGKDLEALELFRDMQAYGVEPNAVTIPSLIPACGNISALMHGKEIHCFSLRR 405

Query: 176 ---------------YCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLF 220
                          Y + G ++     F +M   N+VSW A++ G+A +G  KE++ +F
Sbjct: 406 GIFDDVYVGSALIDMYAKCGRIQLARRCFDKMSALNLVSWNAVMKGYAMHGKAKETMEMF 465

Query: 221 IEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEIS-----WTSMIDG 275
             M     +G   ++ +   +++   + G  EE    ++++     I      +  ++  
Sbjct: 466 HMM---LQSGQKPDLVTFTCVLSACAQNGLTEEGWRCYNSMSEEHGIEPKMEHYACLVTL 522

Query: 276 YLSVGQVSNAYYLFHNMP-DRDAVAWTAMISGL-VQNEL 312
              VG++  AY +   MP + DA  W A++S   V N L
Sbjct: 523 LSRVGKLEEAYSIIKEMPFEPDACVWGALLSSCRVHNNL 561



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 47/194 (24%), Positives = 86/194 (44%), Gaps = 3/194 (1%)

Query: 270 TSMIDGY---LSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAH 326
           TS++  Y   LS+     +  L  ++P     +++++I    ++  F      F  +   
Sbjct: 39  TSLLSFYANALSLSTPQLSLTLSSHLPHPTLFSFSSLIHAFARSHHFPHVLTTFSHLHPL 98

Query: 327 GVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNA 386
            + P          +  +   +D G+Q+H     +   +D I+ + L  MY KC  I +A
Sbjct: 99  RLIPDAFLLPSAIKSCASLRALDPGQQLHAFAAASGFLTDSIVASSLTHMYLKCDRILDA 158

Query: 387 YNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHA 446
             +F  M  RD+V W++M+ G+S  GL  E  ++F  M   G  PN V++ G+L+   + 
Sbjct: 159 RKLFDRMPDRDVVVWSAMIAGYSRLGLVEEAKELFGEMRSGGVEPNLVSWNGMLAGFGNN 218

Query: 447 GLVSRGWELFNAMF 460
           G       +F  M 
Sbjct: 219 GFYDEAVGMFRMML 232


>gi|449455158|ref|XP_004145320.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
 gi|449470513|ref|XP_004152961.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
 gi|449523079|ref|XP_004168552.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
          Length = 733

 Score =  297 bits (761), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 188/553 (33%), Positives = 287/553 (51%), Gaps = 32/553 (5%)

Query: 58  LSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRN 117
           L  AR LF+++P+ N+ +W  +I   A +    ++  +F ++ ++     N      +  
Sbjct: 75  LDYARNLFDQIPQPNLYTWNTLIRAYASSSDPFQSFVIFLDLLDKCEDLPNKFTFPFVIK 134

Query: 118 G--ELNEAR--KVFNSMPIK-----NVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVT 168
              EL  +R     + M IK     ++   N+++  Y  C  +  A  LF+ +  ++VV+
Sbjct: 135 AASELKASRVGTAVHGMAIKLSFGMDLYILNSLVRFYGACGDLSMAERLFKGISCKDVVS 194

Query: 169 WTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLL------FIE 222
           W SMIS + +    E+   LF +M R+NV+  +  + G       K  L        +IE
Sbjct: 195 WNSMISAFAQGNCPEDALELFLKMERENVMPNSVTMVGVLSACAKKLDLEFGRWVCSYIE 254

Query: 223 MKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQV 282
            KGI       ++  CN+M++ Y + G +++AQ LFD +P RD  SWT M+DGY  +G  
Sbjct: 255 RKGI-----KVDLTLCNAMLDMYTKCGSVDDAQKLFDEMPERDVFSWTIMLDGYAKMGDY 309

Query: 283 SNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGV-PPLNATFSVLFGA 341
             A  +F+ MP ++  AW  +IS   QN    EA  +F E++   +  P   T      A
Sbjct: 310 DAARLVFNAMPVKEIAAWNVLISAYEQNGKPKEALAIFNELQLSKIAKPDEVTLVSTLSA 369

Query: 342 AGATANIDLGRQIHCVLMKTESESDLILENC-----LISMYAKCGVIDNAYNIFSNMVSR 396
                 IDLG  IH V +K E     I+ NC     L+ MYAKCG ++ A  +F ++  R
Sbjct: 370 CAQLGAIDLGGWIH-VYIKREG----IVLNCHLISSLVDMYAKCGSLEKALEVFYSVEER 424

Query: 397 DLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELF 456
           D+  W++M+ G   HG     + +F  M E+   PNSVTF  +L ACSHAGLV  G   F
Sbjct: 425 DVYVWSAMIAGLGMHGRGKAAIDLFFEMQEAKVKPNSVTFTNVLCACSHAGLVDEGRVFF 484

Query: 457 NAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEG 516
           + M  VY + P  +HY  M+++LGRAG ++EA E +  +   P   +WGALLGAC     
Sbjct: 485 HEMEPVYGVVPEMKHYACMVDILGRAGFLEEAMELINEMSTTPSASVWGALLGACSL-HM 543

Query: 517 NAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWL 576
           N E+ E A+ +LL+L+P N  A V+L NIYA +GR  +  +LR  M    ++K PGCS +
Sbjct: 544 NVELGELASDQLLKLEPRNHGAIVLLSNIYAKTGRWEKVSELRKLMRDTELKKEPGCSSI 603

Query: 577 MRNGGIQMFLSGD 589
             NG +  FL GD
Sbjct: 604 EANGNVHEFLVGD 616



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 108/427 (25%), Positives = 189/427 (44%), Gaps = 72/427 (16%)

Query: 14  LTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNV 73
           L S +  Y   G +  A+ LF+ +  ++VVS+N+M+S F Q     +A  LF +M   NV
Sbjct: 164 LNSLVRFYGACGDLSMAERLFKGISCKDVVSWNSMISAFAQGNCPEDALELFLKMERENV 223

Query: 74  VSWTAMICGLADA---------------------------------------GRVCEARK 94
           +  +  + G+  A                                       G V +A+K
Sbjct: 224 MPNSVTMVGVLSACAKKLDLEFGRWVCSYIERKGIKVDLTLCNAMLDMYTKCGSVDDAQK 283

Query: 95  LFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEA 154
           LF+EMPER+V SW  M+ G  + G+ + AR VFN+MP+K + +WN +I+ Y +     EA
Sbjct: 284 LFDEMPERDVFSWTIMLDGYAKMGDYDAARLVFNAMPVKEIAAWNVLISAYEQNGKPKEA 343

Query: 155 IVLFEEMEERNV-----VTWTSMISGYCRAGEVEEGYCLFRRMPRKNVV----SWTAMIG 205
           + +F E++   +     VT  S +S   + G ++ G  +   + R+ +V      ++++ 
Sbjct: 344 LAIFNELQLSKIAKPDEVTLVSTLSACAQLGAIDLGGWIHVYIKREGIVLNCHLISSLVD 403

Query: 206 GFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLF---DTVP 262
            +A  G  +++L +F  ++         +V   ++MI G    GR + A +LF       
Sbjct: 404 MYAKCGSLEKALEVFYSVE-------ERDVYVWSAMIAGLGMHGRGKAAIDLFFEMQEAK 456

Query: 263 VR-DEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVA-----WTAMISGLVQNELFVEA 316
           V+ + +++T+++      G V      FH M     V      +  M+  L +     EA
Sbjct: 457 VKPNSVTFTNVLCACSHAGLVDEGRVFFHEMEPVYGVVPEMKHYACMVDILGRAGFLEEA 516

Query: 317 TYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESD--LILENCLI 374
             L  EM      P  + +  L GA     N++LG      L+K E  +   ++L   L 
Sbjct: 517 MELINEM---STTPSASVWGALLGACSLHMNVELGELASDQLLKLEPRNHGAIVL---LS 570

Query: 375 SMYAKCG 381
           ++YAK G
Sbjct: 571 NIYAKTG 577



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 79/268 (29%), Positives = 120/268 (44%), Gaps = 52/268 (19%)

Query: 8   KSLVVHLT---SSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRL 64
           K + V LT   + +  Y+K G +D+A+ LF  MP+R+V S+  ML G+ + G    AR +
Sbjct: 256 KGIKVDLTLCNAMLDMYTKCGSVDDAQKLFDEMPERDVFSWTIMLDGYAKMGDYDAARLV 315

Query: 65  FEEMPERNVVSWTAMICGLADAGRVCEARKLFEEM--------PERNVVS---------- 106
           F  MP + + +W  +I      G+  EA  +F E+         E  +VS          
Sbjct: 316 FNAMPVKEIAAWNVLISAYEQNGKPKEALAIFNELQLSKIAKPDEVTLVSTLSACAQLGA 375

Query: 107 -----W-----------------NSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAG 144
                W                 +S+V    + G L +A +VF S+  ++V  W+AMIAG
Sbjct: 376 IDLGGWIHVYIKREGIVLNCHLISSLVDMYAKCGSLEKALEVFYSVEERDVYVWSAMIAG 435

Query: 145 YVECCMMGEAIVLFEEMEERNV----VTWTSMISGYCRAGEVEEGYCLFRRM-PRKNVVS 199
                    AI LF EM+E  V    VT+T+++     AG V+EG   F  M P   VV 
Sbjct: 436 LGMHGRGKAAIDLFFEMQEAKVKPNSVTFTNVLCACSHAGLVDEGRVFFHEMEPVYGVVP 495

Query: 200 ----WTAMIGGFAWNGFHKESLLLFIEM 223
               +  M+      GF +E++ L  EM
Sbjct: 496 EMKHYACMVDILGRAGFLEEAMELINEM 523



 Score = 42.4 bits (98), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 55/239 (23%), Positives = 104/239 (43%), Gaps = 33/239 (13%)

Query: 352 RQIHCVLMKTE------SESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMV 405
           +++H  +++T       S S L   + L S       +D A N+F  +   +L +WN+++
Sbjct: 42  KEVHARMLRTGLFFDPFSASKLFTASALSSF----STLDYARNLFDQIPQPNLYTWNTLI 97

Query: 406 MGFSHHGLANETLKVFESMLESGTH-PNSVTFLGILSACSHAGLVSRGWELFNAMFDVYK 464
             ++      ++  +F  +L+     PN  TF  ++ A S     SR     + M    K
Sbjct: 98  RAYASSSDPFQSFVIFLDLLDKCEDLPNKFTFPFVIKAASELK-ASRVGTAVHGM--AIK 154

Query: 465 IQPGPEHYV--SMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAE 522
           +  G + Y+  S++   G  G +  AE     +  + D   W +++ A  F +GN    E
Sbjct: 155 LSFGMDLYILNSLVRFYGACGDLSMAERLFKGISCK-DVVSWNSMISA--FAQGNC--PE 209

Query: 523 HAAKRLLELDPLNA-PAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNG 580
            A +  L+++  N  P  V +  + +A  +     KL ++ G    R V  CS++ R G
Sbjct: 210 DALELFLKMERENVMPNSVTMVGVLSACAK-----KLDLEFG----RWV--CSYIERKG 257


>gi|225445374|ref|XP_002281645.1| PREDICTED: pentatricopeptide repeat-containing protein At5g55740,
           chloroplastic-like [Vitis vinifera]
          Length = 858

 Score =  297 bits (761), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 208/703 (29%), Positives = 328/703 (46%), Gaps = 121/703 (17%)

Query: 15  TSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEM------ 68
           T  +  Y+K  F + A  LF  +  RNV S+ A++    + G   +A   F EM      
Sbjct: 120 TKLVVFYAKCDFPEVAVRLFHRLRVRNVFSWAAIVGLQCRMGFSEDALLGFIEMQENGVF 179

Query: 69  PERNVVSWTAMICG-----------------------------LADAGRVC----EARKL 95
           P+  V+      CG                             L D    C    +ARK+
Sbjct: 180 PDNFVLPNVLKACGSLQLIGLGKGVHGYVLKMGFGACVFVSSSLVDMYGKCGVLEDARKV 239

Query: 96  FEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCM----- 150
           F+ M E+NVV+WNSM+VG ++NG   EA  VF  M ++ +      +A ++         
Sbjct: 240 FDSMVEKNVVTWNSMIVGYVQNGLNQEAIDVFYDMRVEGIEPTRVTVASFLSASANLDAL 299

Query: 151 ----MGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGG 206
                G AI +   ++  N++  +S+I+ Y + G +E+   +F RM  K+VV+W  +I  
Sbjct: 300 IEGKQGHAIAILNSLDLDNILG-SSIINFYSKVGLIEDAELVFSRMLEKDVVTWNLLISS 358

Query: 207 FAWNG------------------FHKESLLLFIEMKGICDN-----GNNC---------N 234
           +  +                   F   +L   +    +  N       +C         +
Sbjct: 359 YVQHHQVGKALNMCHLMRSENLRFDSVTLSSILSASAVTSNIKLGKEGHCYCIRRNLESD 418

Query: 235 VQSCNSMINGYIRFGRLEEAQNLFDTVPVRD----------------------------- 265
           V   NS+I+ Y +  R+++A+ +FD+   RD                             
Sbjct: 419 VVVANSIIDMYAKCERIDDARKVFDSTTERDLVLWNTLLAAYAQVGLSGEALKLFYQMQF 478

Query: 266 ------EISWTSMIDGYLSVGQVSNAYYLFHNMP----DRDAVAWTAMISGLVQNELFVE 315
                  ISW S+I G+L  GQV+ A  +F  M       + + WT +ISGL Q+    E
Sbjct: 479 DSVPPNVISWNSVILGFLRNGQVNEAKDMFSQMQSLGFQPNLITWTTLISGLAQSGFGYE 538

Query: 316 ATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLIS 375
           A   F +M+  G+ P  A+ + +  A     ++  GR IH  + + E    + +   L+ 
Sbjct: 539 AILFFQKMQEAGIRPSIASITSVLLACTDIPSLWYGRAIHGFITRHEFCLSVPVATSLVD 598

Query: 376 MYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVT 435
           MYAKCG ID A  +F  M S++L  +N+M+  ++ HG A E L +F+ + + G  P+S+T
Sbjct: 599 MYAKCGSIDEAKKVFHMMSSKELPIYNAMISAYALHGQAVEALALFKHLQKEGIEPDSIT 658

Query: 436 FLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRL 495
           F  ILSACSHAGLV+ G  LF  M   + + P  EHY  +++LL R G + EA   +L +
Sbjct: 659 FTSILSACSHAGLVNEGLNLFADMVSKHNMNPIMEHYGCVVSLLSRCGNLDEALRLILTM 718

Query: 496 PFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEE 555
           PF+PD  I G+LL AC       E+ E+ +K L +L+P N+  +V L N YAA+GR VE 
Sbjct: 719 PFQPDAHILGSLLTACRE-HHEIELGEYLSKHLFKLEPSNSGNYVALSNAYAAAGRWVEV 777

Query: 556 HKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
             +R  M ++G+RK PGCSW+   G + +F++GD    +  EI
Sbjct: 778 SNMRDLMKVRGLRKNPGCSWIQTGGKLNVFVAGDGSHPKTEEI 820



 Score =  128 bits (322), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 111/431 (25%), Positives = 200/431 (46%), Gaps = 43/431 (9%)

Query: 106 SWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEER- 164
           S+   +  L ++G L E+  + + M  ++      +    ++ C+   A+   +++  R 
Sbjct: 46  SYFHHISSLCKDGHLQESVHLLSEMEFEDFQIGPEIYGELLQGCVYERALHTGQQIHARI 105

Query: 165 ---------NVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKE 215
                    N    T ++  Y +    E    LF R+  +NV SW A++G     GF ++
Sbjct: 106 LKNGDFFAKNEYVETKLVVFYAKCDFPEVAVRLFHRLRVRNVFSWAAIVGLQCRMGFSED 165

Query: 216 SLLLFIEMK--GIC-DNGNNCNV-QSCNSM--------INGYIRFGRLEEAQNLFDTVPV 263
           +LL FIEM+  G+  DN    NV ++C S+        ++GY+   ++     +F +   
Sbjct: 166 ALLGFIEMQENGVFPDNFVLPNVLKACGSLQLIGLGKGVHGYVL--KMGFGACVFVS--- 220

Query: 264 RDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEM 323
                 +S++D Y   G + +A  +F +M +++ V W +MI G VQN L  EA  +F +M
Sbjct: 221 ------SSLVDMYGKCGVLEDARKVFDSMVEKNVVTWNSMIVGYVQNGLNQEAIDVFYDM 274

Query: 324 RAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVI 383
           R  G+ P   T +    A+     +  G+Q H + +    + D IL + +I+ Y+K G+I
Sbjct: 275 RVEGIEPTRVTVASFLSASANLDALIEGKQGHAIAILNSLDLDNILGSSIINFYSKVGLI 334

Query: 384 DNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSAC 443
           ++A  +FS M+ +D+V+WN ++  +  H    + L +   M       +SVT   ILSA 
Sbjct: 335 EDAELVFSRMLEKDVVTWNLLISSYVQHHQVGKALNMCHLMRSENLRFDSVTLSSILSAS 394

Query: 444 SHAGLVSRGWELFNAMFDVYKIQPGPEHYV----SMINLLGRAGKIKEAEEFVLRLPFEP 499
           +    +  G E        Y I+   E  V    S+I++  +  +I +A + V     E 
Sbjct: 395 AVTSNIKLGKE-----GHCYCIRRNLESDVVVANSIIDMYAKCERIDDARK-VFDSTTER 448

Query: 500 DHRIWGALLGA 510
           D  +W  LL A
Sbjct: 449 DLVLWNTLLAA 459



 Score = 98.6 bits (244), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 78/271 (28%), Positives = 130/271 (47%), Gaps = 19/271 (7%)

Query: 4   RNHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARR 63
           R + +S VV   S I  Y+K   ID+A+ +F    +R++V +N +L+ + Q G   EA +
Sbjct: 412 RRNLESDVVVANSIIDMYAKCERIDDARKVFDSTTERDLVLWNTLLAAYAQVGLSGEALK 471

Query: 64  LFEEMP----ERNVVSWTAMICGLADAGRVCEARKLFEEMP----ERNVVSWNSMVVGLI 115
           LF +M       NV+SW ++I G    G+V EA+ +F +M     + N+++W +++ GL 
Sbjct: 472 LFYQMQFDSVPPNVISWNSVILGFLRNGQVNEAKDMFSQMQSLGFQPNLITWTTLISGLA 531

Query: 116 RNGELNEARKVFNSMPIKNVISWNAMIAGYVECCM------MGEAIVLFEEMEE--RNVV 167
           ++G   EA   F  M    +    A I   +  C        G AI  F    E   +V 
Sbjct: 532 QSGFGYEAILFFQKMQEAGIRPSIASITSVLLACTDIPSLWYGRAIHGFITRHEFCLSVP 591

Query: 168 TWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGIC 227
             TS++  Y + G ++E   +F  M  K +  + AMI  +A +G   E+L LF   K + 
Sbjct: 592 VATSLVDMYAKCGSIDEAKKVFHMMSSKELPIYNAMISAYALHGQAVEALALF---KHLQ 648

Query: 228 DNGNNCNVQSCNSMINGYIRFGRLEEAQNLF 258
             G   +  +  S+++     G + E  NLF
Sbjct: 649 KEGIEPDSITFTSILSACSHAGLVNEGLNLF 679


>gi|359490408|ref|XP_002267761.2| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Vitis vinifera]
          Length = 650

 Score =  297 bits (760), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 178/542 (32%), Positives = 282/542 (52%), Gaps = 10/542 (1%)

Query: 53  LQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVV 112
           L +  L +A  +F ++    +V W  MI GL+ +    EA  ++  M  + +   N  ++
Sbjct: 61  LSSTNLHKAHLVFNQIECPTLVVWNHMIRGLSQSDHPVEAIHMYTRMHHQGITGNNLTLI 120

Query: 113 GLI----RNGELNEARKVFNSMPIKNVISW----NAMIAGYVECCMMGEAIVLFEEMEER 164
            L     R  ++   RK+          S+    NA+I  Y  C  +G A  +F+ M +R
Sbjct: 121 FLFKACARVSDIVSGRKIHVHALKLGFESYLFVSNALIHMYAMCGQLGFAQKMFDGMLDR 180

Query: 165 NVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEM- 223
           ++V+W ++I GY +  + +E   LF  M   N+ +    +        H         M 
Sbjct: 181 DLVSWNTLICGYSQYNKYKEVLRLFDAMTAANIKADAVTMVKIILACSHLGDWEFADSMV 240

Query: 224 KGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVS 283
           K I +N    +V   N++I+ Y R    E AQ +FD +  R+ +SW +++ G+  VG ++
Sbjct: 241 KYIKENNLEIDVYLGNTLIDMYGRRSLAELAQGVFDRMRERNIVSWNALVMGHAKVGNLT 300

Query: 284 NAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAG 343
            A  LF NMP RD ++WT+MI+G  Q   F +A  LF EM A  V P   T + +  A  
Sbjct: 301 AARKLFDNMPKRDVISWTSMITGYSQASQFSDAVKLFQEMMAAKVKPDKVTVASVLSACA 360

Query: 344 ATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNS 403
               +D+G  +H  + +   ++D+ + N LI MY KCG+++ A  +F  M  +D VSW S
Sbjct: 361 HLGKLDVGWAVHHYIRRHGVQADIYVGNSLIDMYCKCGMVEKALEVFHRMKDKDSVSWTS 420

Query: 404 MVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVY 463
           ++ G + +G AN  L +F  ML  G  P   TF+GIL AC+HAGLV++G E F +M  V+
Sbjct: 421 VISGLAVNGFANSALDLFSQMLREGVQPTHGTFVGILLACAHAGLVNKGLEYFESMESVH 480

Query: 464 KIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEH 523
            + P  +HY  +++LL R+G I +A EF+ ++P  PD  +W  LL AC    GN  +AE 
Sbjct: 481 GLVPAMKHYGCVVDLLSRSGNIDKAYEFIKKMPIVPDVVVWRILLSACKL-HGNVVLAEI 539

Query: 524 AAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQ 583
           A KRLLELDP ++  +V+L N YA   R  +  K+R  M    V+K  G S +  +G + 
Sbjct: 540 ATKRLLELDPCDSGNYVLLSNTYAGVDRWDDAMKMRELMEDSDVQKPSGSSSIEVDGMVS 599

Query: 584 MF 585
            +
Sbjct: 600 NY 601



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 103/384 (26%), Positives = 180/384 (46%), Gaps = 23/384 (5%)

Query: 46  NAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNV- 104
           NA++  +   G+L  A+++F+ M +R++VSW  +ICG +   +  E  +LF+ M   N+ 
Sbjct: 155 NALIHMYAMCGQLGFAQKMFDGMLDRDLVSWNTLICGYSQYNKYKEVLRLFDAMTAANIK 214

Query: 105 ---VSWNSMVVGLIRNGELNEARKVFNSMPIKN----VISWNAMIAGYVECCMMGEAIVL 157
              V+   +++     G+   A  +   +   N    V   N +I  Y    +   A  +
Sbjct: 215 ADAVTMVKIILACSHLGDWEFADSMVKYIKENNLEIDVYLGNTLIDMYGRRSLAELAQGV 274

Query: 158 FEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESL 217
           F+ M ERN+V+W +++ G+ + G +     LF  MP+++V+SWT+MI G++      +++
Sbjct: 275 FDRMRERNIVSWNALVMGHAKVGNLTAARKLFDNMPKRDVISWTSMITGYSQASQFSDAV 334

Query: 218 LLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVR----DEISWTSMI 273
            LF EM       +   V    S+++     G+L+    +   +       D     S+I
Sbjct: 335 KLFQEMMAAKVKPDKVTVA---SVLSACAHLGKLDVGWAVHHYIRRHGVQADIYVGNSLI 391

Query: 274 DGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNA 333
           D Y   G V  A  +FH M D+D+V+WT++ISGL  N     A  LF +M   GV P + 
Sbjct: 392 DMYCKCGMVEKALEVFHRMKDKDSVSWTSVISGLAVNGFANSALDLFSQMLREGVQPTHG 451

Query: 334 TFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILE----NCLISMYAKCGVIDNAYNI 389
           TF  +  A      ++ G +        ES   L+       C++ + ++ G ID AY  
Sbjct: 452 TFVGILLACAHAGLVNKGLE---YFESMESVHGLVPAMKHYGCVVDLLSRSGNIDKAYEF 508

Query: 390 FSNM-VSRDLVSWNSMVMGFSHHG 412
              M +  D+V W  ++     HG
Sbjct: 509 IKKMPIVPDVVVWRILLSACKLHG 532



 Score =  122 bits (306), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 103/374 (27%), Positives = 165/374 (44%), Gaps = 89/374 (23%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNV---- 73
           I  Y+  G +  A+ +F  M  R++VS+N ++ G+ Q  +  E  RLF+ M   N+    
Sbjct: 158 IHMYAMCGQLGFAQKMFDGMLDRDLVSWNTLICGYSQYNKYKEVLRLFDAMTAANIKADA 217

Query: 74  VSWTAMICG--------LADA------------------------GR--VCE-ARKLFEE 98
           V+   +I           AD+                        GR  + E A+ +F+ 
Sbjct: 218 VTMVKIILACSHLGDWEFADSMVKYIKENNLEIDVYLGNTLIDMYGRRSLAELAQGVFDR 277

Query: 99  MPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLF 158
           M ERN+VSWN++V+G  + G L  ARK+F++MP ++VISW +MI GY +     +A+ LF
Sbjct: 278 MRERNIVSWNALVMGHAKVGNLTAARKLFDNMPKRDVISWTSMITGYSQASQFSDAVKLF 337

Query: 159 EEMEERNV---------------------VTWT------------------SMISGYCRA 179
           +EM    V                     V W                   S+I  YC+ 
Sbjct: 338 QEMMAAKVKPDKVTVASVLSACAHLGKLDVGWAVHHYIRRHGVQADIYVGNSLIDMYCKC 397

Query: 180 GEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEM--KGIC-DNGNNCNV- 235
           G VE+   +F RM  K+ VSWT++I G A NGF   +L LF +M  +G+   +G    + 
Sbjct: 398 GMVEKALEVFHRMKDKDSVSWTSVISGLAVNGFANSALDLFSQMLREGVQPTHGTFVGIL 457

Query: 236 QSC--NSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMP 293
            +C    ++N  + +   E  +++   VP      +  ++D     G +  AY     MP
Sbjct: 458 LACAHAGLVNKGLEY--FESMESVHGLVPAMKH--YGCVVDLLSRSGNIDKAYEFIKKMP 513

Query: 294 D-RDAVAWTAMISG 306
              D V W  ++S 
Sbjct: 514 IVPDVVVWRILLSA 527



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 69/285 (24%), Positives = 125/285 (43%), Gaps = 62/285 (21%)

Query: 1   MSERNHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSE 60
           M ERN     +V   + +  ++K G +  A+ LF  MP+R+V+S+ +M++G+ Q  + S+
Sbjct: 278 MRERN-----IVSWNALVMGHAKVGNLTAARKLFDNMPKRDVISWTSMITGYSQASQFSD 332

Query: 61  ARRLFEEM------PERNVVSWTAMICG-----------------------------LAD 85
           A +LF+EM      P++  V+     C                              L D
Sbjct: 333 AVKLFQEMMAAKVKPDKVTVASVLSACAHLGKLDVGWAVHHYIRRHGVQADIYVGNSLID 392

Query: 86  ----AGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAM 141
                G V +A ++F  M +++ VSW S++ GL  NG  N A  +F+ M  + V   +  
Sbjct: 393 MYCKCGMVEKALEVFHRMKDKDSVSWTSVISGLAVNGFANSALDLFSQMLREGVQPTHGT 452

Query: 142 IAGYVECC----MMGEAIVLFEEMEERNVVT-----WTSMISGYCRAGEVEEGYCLFRRM 192
             G +  C    ++ + +  FE ME  + +      +  ++    R+G +++ Y   ++M
Sbjct: 453 FVGILLACAHAGLVNKGLEYFESMESVHGLVPAMKHYGCVVDLLSRSGNIDKAYEFIKKM 512

Query: 193 P-RKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGI-----CDNGN 231
           P   +VV W  ++        H   +L  I  K +     CD+GN
Sbjct: 513 PIVPDVVVWRILLSACK---LHGNVVLAEIATKRLLELDPCDSGN 554


>gi|297849104|ref|XP_002892433.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338275|gb|EFH68692.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 741

 Score =  297 bits (760), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 187/556 (33%), Positives = 291/556 (52%), Gaps = 20/556 (3%)

Query: 58  LSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPE----RNVVSWNSMVVG 113
           L  A  +FE + E N++ W  M  G A +     A KL+  M       N  ++  ++  
Sbjct: 84  LPYAISVFETIQEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFLLKS 143

Query: 114 LIRNGELNEARKVFNSMPIK-----NVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVT 168
             ++    E +++   + +K     ++    ++I+ YV+   + +A  +F+    R+VV+
Sbjct: 144 CAKSKAFKEGQQIHGHV-LKLGYDLDLFVHTSLISVYVQNGRLEDARKVFDRSPHRDVVS 202

Query: 169 WTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGI-- 226
           +T++I GY   G +E    LF  +P K+VVSW AMI G+A  G +KE+L LF EM     
Sbjct: 203 YTALIKGYASRGYIESAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKEMMKTNI 262

Query: 227 -CDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWT-SMIDGYLSVGQVSN 284
             D      V S  +  +G I  GR  +  +  D       +    S++D Y   G++  
Sbjct: 263 RPDESTMVTVVSACAQ-SGSIELGR--QVHSWIDDHGFGSNLKIVNSLMDLYSKCGELET 319

Query: 285 AYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGA 344
           A  LF  +  +D ++W  +I G     L+ EA  LF EM   G  P + T   +  A   
Sbjct: 320 ACGLFEGLLYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGERPNDVTMLSILPACAH 379

Query: 345 TANIDLGRQIHCVLMK--TESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWN 402
              ID+GR IH  + K    + +   L   LI MYAKCG I+ A+ +F++++ + L SWN
Sbjct: 380 LGAIDIGRWIHVYIDKRLKSATNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWN 439

Query: 403 SMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDV 462
           +M+ GF+ HG A+    +F  M + G  P+ +TF+G+LSACS +G++  G  +F  M   
Sbjct: 440 AMIFGFAMHGRADAAFDIFSRMRKIGIEPDDITFVGLLSACSRSGMLDLGRHIFRTMTQD 499

Query: 463 YKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAE 522
           YKI P  EHY  MI+LLG +G  KEAEE +  +  EPD  IW +LL AC    GN E+ E
Sbjct: 500 YKITPKLEHYGCMIDLLGHSGLFKEAEEMINNMEMEPDGVIWCSLLKACKI-RGNVELGE 558

Query: 523 HAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGI 582
             A+ L++++P N   +V+L NIYA +GR  E  K+R  +  KG++KVPGCS +  +  +
Sbjct: 559 SFAQNLIKIEPENPGCYVLLSNIYATAGRWNEVAKIRALLNDKGMKKVPGCSSIEIDSVV 618

Query: 583 QMFLSGDKIPAQVAEI 598
             F+ GDK   +  EI
Sbjct: 619 HEFIIGDKFHPRNREI 634



 Score =  183 bits (465), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 115/413 (27%), Positives = 214/413 (51%), Gaps = 22/413 (5%)

Query: 96  FEEMPERNVVSWNSM----VVGLIRNGELNEARKVFNSMPIKNVI-SWNAMIAGYVECCM 150
           F  +P  +   ++S+     + L+ N +  ++ ++ ++  IK  + + N  ++  +E C+
Sbjct: 17  FHFLPSSSDPPYDSLRNHPSLSLLHNCKTLQSLRLIHAQMIKTGLHNTNYALSKLLELCV 76

Query: 151 MGE-------AIVLFEEMEERNVVTWTSMISGYCRAGE----VEEGYCLFRRMPRKNVVS 199
           +         AI +FE ++E N++ W +M  G+  + +    ++   C+       N  +
Sbjct: 77  ISPHFDGLPYAISVFETIQEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYT 136

Query: 200 WTAMIGGFAWNGFHKESLLLFIEMKG-ICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLF 258
           +  ++   A +   KE      ++ G +   G + ++    S+I+ Y++ GRLE+A+ +F
Sbjct: 137 FPFLLKSCAKSKAFKEGQ----QIHGHVLKLGYDLDLFVHTSLISVYVQNGRLEDARKVF 192

Query: 259 DTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATY 318
           D  P RD +S+T++I GY S G + +A  LF  +P +D V+W AMISG  +   + EA  
Sbjct: 193 DRSPHRDVVSYTALIKGYASRGYIESAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALE 252

Query: 319 LFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYA 378
           LF EM    + P  +T   +  A   + +I+LGRQ+H  +      S+L + N L+ +Y+
Sbjct: 253 LFKEMMKTNIRPDESTMVTVVSACAQSGSIELGRQVHSWIDDHGFGSNLKIVNSLMDLYS 312

Query: 379 KCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLG 438
           KCG ++ A  +F  ++ +D++SWN+++ G++H  L  E L +F+ ML SG  PN VT L 
Sbjct: 313 KCGELETACGLFEGLLYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGERPNDVTMLS 372

Query: 439 ILSACSHAGLVSRG-WELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEE 490
           IL AC+H G +  G W        +           S+I++  + G I+ A +
Sbjct: 373 ILPACAHLGAIDIGRWIHVYIDKRLKSATNASSLRTSLIDMYAKCGDIEAAHQ 425


>gi|297743088|emb|CBI35955.3| unnamed protein product [Vitis vinifera]
          Length = 708

 Score =  297 bits (760), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 184/615 (29%), Positives = 323/615 (52%), Gaps = 45/615 (7%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQR---NVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVV 74
           ++ Y+  G + +A+ +F++ P     N++ +N++L   + +G   EA  ++  M +  V 
Sbjct: 73  VSVYAGFGLVSDAQRVFEVSPIECFSNLLLWNSILRANVAHGYCEEALEIYCRMRKLGVS 132

Query: 75  S------WTAMICGLADAGRVCEA--RKLFEEMPERNVVSWNSMVVGLIRNGELNEARKV 126
           +           C L  + ++C +    + E   + N+   N ++    + G +++ARKV
Sbjct: 133 ADGFTFPLVIRACALMGSRKLCRSVHGHVVEMGFQWNLHVGNELMGMYGKIGRMDDARKV 192

Query: 127 FNSMPIKNVISWNAMIAGYV---ECC-------MMGEAIVLFEEMEERNVVTWTSMISGY 176
           F  M +++ +SWN M++GY    +C        MMG A +      E N+VTWTS++S +
Sbjct: 193 FERMAVRSCVSWNTMVSGYALNYDCHGASEMFRMMGSAGL------EPNLVTWTSLLSSH 246

Query: 177 CRAGEVEEGYCLFRRMPRKNVVSWTAMIG-----GFAWNGFHKESLLLFIEMKGICDNGN 231
            R G+  E   LF RM  + + +    +            F +  ++    +KG  +N  
Sbjct: 247 ARCGQHVETMELFGRMRMRGIGATAEALAVVLSVSVDLAAFDEGKVIHGYVVKGGFEN-- 304

Query: 232 NCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHN 291
              +   NS+I  Y + G +  A+ LF  +  ++ +SW ++I  Y  +G    A+ +F  
Sbjct: 305 --YLFVKNSLICLYGKHGNVNAARILFLEIKTKNIVSWNALISSYADLGWCDEAFAIFLQ 362

Query: 292 MPDRD--------AVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAG 343
           +   D         V+W+A+I G        EA  LF  M+   V   + T + +     
Sbjct: 363 LEKTDEYPMVRPNVVSWSAVIGGFASKGQGEEALELFRRMQLAKVKANSVTIASVLSVCA 422

Query: 344 ATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNS 403
             A + LGR+IH  ++++  + ++++ N LI+MY K G       +F  + ++DL+SWN+
Sbjct: 423 ELAALHLGREIHGHVVRSLMDGNILVGNGLINMYTKSGSFKEGNLVFEKIENKDLISWNT 482

Query: 404 MVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVY 463
           MV G+  HGL    ++ F+ M++ G  P+ VTF+ +LSACSHAGLV+ G ELF+ M   +
Sbjct: 483 MVAGYGIHGLGENAIRTFDQMIKDGFEPDGVTFVAVLSACSHAGLVAEGRELFDKMIKEF 542

Query: 464 KIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEH 523
           +++P  EHY  M++LLGRAG ++EA + V  +P EP+  +WGALL +C     N E+AE 
Sbjct: 543 RVEPQMEHYACMVDLLGRAGLLQEASKVVKSMPVEPNACVWGALLNSCRM-HKNTEVAEE 601

Query: 524 AAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQ 583
            A ++  L+   A ++++L NIYAASGR  +  K+R+    KG++K PG SW+     + 
Sbjct: 602 TASQIFNLNSEIAGSYMLLSNIYAASGRWEDSAKVRISAKTKGLKKTPGQSWIQVKKKVY 661

Query: 584 MFLSGDKIPAQVAEI 598
           MF +G+   A++ E+
Sbjct: 662 MFSAGNTQHAELEEV 676



 Score = 85.5 bits (210), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 74/268 (27%), Positives = 130/268 (48%), Gaps = 22/268 (8%)

Query: 16  SSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLF------EEMP 69
           S I  Y K G ++ A+ LF  +  +N+VS+NA++S +   G   EA  +F      +E P
Sbjct: 311 SLICLYGKHGNVNAARILFLEIKTKNIVSWNALISSYADLGWCDEAFAIFLQLEKTDEYP 370

Query: 70  --ERNVVSWTAMICGLADAGRVCEARKLFEEMP----ERNVVSWNSMVVGLIRNGELNEA 123
               NVVSW+A+I G A  G+  EA +LF  M     + N V+  S++        L+  
Sbjct: 371 MVRPNVVSWSAVIGGFASKGQGEEALELFRRMQLAKVKANSVTIASVLSVCAELAALHLG 430

Query: 124 RK----VFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRA 179
           R+    V  S+   N++  N +I  Y +     E  ++FE++E +++++W +M++GY   
Sbjct: 431 REIHGHVVRSLMDGNILVGNGLINMYTKSGSFKEGNLVFEKIENKDLISWNTMVAGYGIH 490

Query: 180 GEVEEGYCLFRRMPRKNV----VSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNV 235
           G  E     F +M +       V++ A++   +  G   E   LF +M  I +      +
Sbjct: 491 GLGENAIRTFDQMIKDGFEPDGVTFVAVLSACSHAGLVAEGRELFDKM--IKEFRVEPQM 548

Query: 236 QSCNSMINGYIRFGRLEEAQNLFDTVPV 263
           +    M++   R G L+EA  +  ++PV
Sbjct: 549 EHYACMVDLLGRAGLLQEASKVVKSMPV 576



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 60/205 (29%), Positives = 104/205 (50%), Gaps = 20/205 (9%)

Query: 11  VVHLTSSITKYSKRGFIDEAKALF-QL-------MPQRNVVSYNAMLSGFLQNGRLSEAR 62
           +V   + I+ Y+  G+ DEA A+F QL       M + NVVS++A++ GF   G+  EA 
Sbjct: 337 IVSWNALISSYADLGWCDEAFAIFLQLEKTDEYPMVRPNVVSWSAVIGGFASKGQGEEAL 396

Query: 63  RLFEEMP----ERNVVSWTAMICGLADAGRVCEARKL----FEEMPERNVVSWNSMVVGL 114
            LF  M     + N V+  +++   A+   +   R++       + + N++  N ++   
Sbjct: 397 ELFRRMQLAKVKANSVTIASVLSVCAELAALHLGREIHGHVVRSLMDGNILVGNGLINMY 456

Query: 115 IRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEME----ERNVVTWT 170
            ++G   E   VF  +  K++ISWN M+AGY    +   AI  F++M     E + VT+ 
Sbjct: 457 TKSGSFKEGNLVFEKIENKDLISWNTMVAGYGIHGLGENAIRTFDQMIKDGFEPDGVTFV 516

Query: 171 SMISGYCRAGEVEEGYCLFRRMPRK 195
           +++S    AG V EG  LF +M ++
Sbjct: 517 AVLSACSHAGLVAEGRELFDKMIKE 541



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 55/237 (23%), Positives = 102/237 (43%), Gaps = 37/237 (15%)

Query: 350 LGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVS-----RDLVSWNSM 404
           L +QIH  ++ T S     L   ++S+YA  G++ +A  +F   VS      +L+ WNS+
Sbjct: 49  LSQQIHSQIIVTGSHRSAFLAARVVSVYAGFGLVSDAQRVFE--VSPIECFSNLLLWNSI 106

Query: 405 VMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACS-----------HAGLVSRGW 453
           +     HG   E L+++  M + G   +  TF  ++ AC+           H  +V  G+
Sbjct: 107 LRANVAHGYCEEALEIYCRMRKLGVSADGFTFPLVIRACALMGSRKLCRSVHGHVVEMGF 166

Query: 454 ELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGF 513
           +        + +  G E    ++ + G+ G++ +A +   R+        W  ++     
Sbjct: 167 Q--------WNLHVGNE----LMGMYGKIGRMDDARKVFERMAVRSCVS-WNTMVSGYAL 213

Query: 514 ---CEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGV 567
              C G +E+        LE  P N      L + +A  G+HVE  +L   M ++G+
Sbjct: 214 NYDCHGASEMFRMMGSAGLE--P-NLVTWTSLLSSHARCGQHVETMELFGRMRMRGI 267


>gi|359484088|ref|XP_002263394.2| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic [Vitis vinifera]
          Length = 762

 Score =  297 bits (760), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 164/451 (36%), Positives = 245/451 (54%), Gaps = 39/451 (8%)

Query: 139 NAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVV 198
           +++I  Y     +G A  LF     R+VV+W +MI GY +  E+     +F RM  ++V+
Sbjct: 234 SSLIHLYANGKDLGAAKQLFNLCSARDVVSWNAMIDGYVKHVEMGHARMVFDRMVCRDVI 293

Query: 199 SWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLF 258
           SW                                      N+MINGY   G+++EA+ LF
Sbjct: 294 SW--------------------------------------NTMINGYAIVGKIDEAKRLF 315

Query: 259 DTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATY 318
           D +P R+ +SW SM+ G++  G V +A+ LF  MP RD V+W +M++   Q     EA  
Sbjct: 316 DEMPERNLVSWNSMLAGFVKCGNVEDAFGLFSEMPCRDVVSWNSMLACYAQCGKPNEALA 375

Query: 319 LFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYA 378
           LF +MRA GV P  AT   L  A      +D G  +H  +     E + I+   L+ MYA
Sbjct: 376 LFDQMRAVGVKPTEATVVSLLSACAHLGALDKGLHLHTYINDNRIEVNSIVGTALVDMYA 435

Query: 379 KCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLG 438
           KCG I  A  +F+ M S+D+++WN+++ G + HG   E  ++F+ M E+G  PN +TF+ 
Sbjct: 436 KCGKISLATQVFNAMESKDVLAWNTIIAGMAIHGNVKEAQQLFKEMKEAGVEPNDITFVA 495

Query: 439 ILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFE 498
           ILSACSHAG+V  G +L + M   Y I+P  EHY  +I+LL RAG ++EA E +  +P E
Sbjct: 496 ILSACSHAGMVDEGQKLLDCMSSSYGIEPKVEHYGCVIDLLARAGFLEEAMELIGTMPME 555

Query: 499 PDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKL 558
           P+    GALLG C    GN E+ E   KRL+ L P ++  +++L NIYAA+ +  +  K+
Sbjct: 556 PNPSALGALLGGCRI-HGNFELGEMVGKRLINLQPCHSGRYILLSNIYAAAKKWDDARKV 614

Query: 559 RMDMGLKGVRKVPGCSWLMRNGGIQMFLSGD 589
           R  M + G+ KVPG S +   G +  F++GD
Sbjct: 615 RNLMKVNGISKVPGVSVIELKGMVHRFVAGD 645



 Score =  164 bits (416), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 103/338 (30%), Positives = 171/338 (50%), Gaps = 48/338 (14%)

Query: 14  LTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNV 73
           ++S I  Y+    +  AK LF L   R+VVS+NAM+ G++++  +  AR +F+ M  R+V
Sbjct: 233 VSSLIHLYANGKDLGAAKQLFNLCSARDVVSWNAMIDGYVKHVEMGHARMVFDRMVCRDV 292

Query: 74  VSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIK 133
           +SW  MI G A  G++ EA++LF+EMPERN+VSWNSM+ G ++ G + +A  +F+ MP +
Sbjct: 293 ISWNTMINGYAIVGKIDEAKRLFDEMPERNLVSWNSMLAGFVKCGNVEDAFGLFSEMPCR 352

Query: 134 NVISWNAMIAGYVECCMMGEAIVLFEEME------------------------------- 162
           +V+SWN+M+A Y +C    EA+ LF++M                                
Sbjct: 353 DVVSWNSMLACYAQCGKPNEALALFDQMRAVGVKPTEATVVSLLSACAHLGALDKGLHLH 412

Query: 163 --------ERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHK 214
                   E N +  T+++  Y + G++     +F  M  K+V++W  +I G A +G  K
Sbjct: 413 TYINDNRIEVNSIVGTALVDMYAKCGKISLATQVFNAMESKDVLAWNTIIAGMAIHGNVK 472

Query: 215 ESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEIS-----W 269
           E+  LF EMK   + G   N  +  ++++     G ++E Q L D +     I      +
Sbjct: 473 EAQQLFKEMK---EAGVEPNDITFVAILSACSHAGMVDEGQKLLDCMSSSYGIEPKVEHY 529

Query: 270 TSMIDGYLSVGQVSNAYYLFHNMP-DRDAVAWTAMISG 306
             +ID     G +  A  L   MP + +  A  A++ G
Sbjct: 530 GCVIDLLARAGFLEEAMELIGTMPMEPNPSALGALLGG 567



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 74/240 (30%), Positives = 120/240 (50%), Gaps = 22/240 (9%)

Query: 1   MSERNHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSE 60
           M ERN     +V   S +  + K G +++A  LF  MP R+VVS+N+ML+ + Q G+ +E
Sbjct: 318 MPERN-----LVSWNSMLAGFVKCGNVEDAFGLFSEMPCRDVVSWNSMLACYAQCGKPNE 372

Query: 61  ARRLFEEMPERNVVSWTAMICGLADA----GRVCEARKLF----EEMPERNVVSWNSMVV 112
           A  LF++M    V    A +  L  A    G + +   L     +   E N +   ++V 
Sbjct: 373 ALALFDQMRAVGVKPTEATVVSLLSACAHLGALDKGLHLHTYINDNRIEVNSIVGTALVD 432

Query: 113 GLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNV----VT 168
              + G+++ A +VFN+M  K+V++WN +IAG      + EA  LF+EM+E  V    +T
Sbjct: 433 MYAKCGKISLATQVFNAMESKDVLAWNTIIAGMAIHGNVKEAQQLFKEMKEAGVEPNDIT 492

Query: 169 WTSMISGYCRAGEVEEGYCLFRRMP-----RKNVVSWTAMIGGFAWNGFHKESLLLFIEM 223
           + +++S    AG V+EG  L   M         V  +  +I   A  GF +E++ L   M
Sbjct: 493 FVAILSACSHAGMVDEGQKLLDCMSSSYGIEPKVEHYGCVIDLLARAGFLEEAMELIGTM 552



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 54/253 (21%), Positives = 113/253 (44%), Gaps = 11/253 (4%)

Query: 285 AYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGA 344
           A  +FH++ +     + ++I  L  ++  +EA  L+  M   G+ P + T+  +  A   
Sbjct: 148 AKTIFHHLQNPPPSLYNSLIRALSSSKTPLEALPLYHTMLQSGLKPDHMTYPFVIKACNE 207

Query: 345 TANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSM 404
           ++    G  +H  ++K+  E D  + + LI +YA    +  A  +F+   +RD+VSWN+M
Sbjct: 208 SSVTWFGLLVHTHVVKSGFECDSYIVSSLIHLYANGKDLGAAKQLFNLCSARDVVSWNAM 267

Query: 405 VMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYK 464
           + G+  H        VF+ M+      + +++  +++  +  G +     LF+ M +   
Sbjct: 268 IDGYVKHVEMGHARMVFDRMVCR----DVISWNTMINGYAIVGKIDEAKRLFDEMPERNL 323

Query: 465 IQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFC-EGNAEIAEH 523
           +      + SM+    + G +++A      +P   D   W ++L     C + N  +A  
Sbjct: 324 VS-----WNSMLAGFVKCGNVEDAFGLFSEMPCR-DVVSWNSMLACYAQCGKPNEALALF 377

Query: 524 AAKRLLELDPLNA 536
              R + + P  A
Sbjct: 378 DQMRAVGVKPTEA 390


>gi|347954540|gb|AEP33770.1| organelle transcript processing 82, partial [Raphanus sativus]
          Length = 675

 Score =  297 bits (760), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 187/560 (33%), Positives = 298/560 (53%), Gaps = 24/560 (4%)

Query: 58  LSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPE----RNVVSWNSMVVG 113
           L  A  +FE + E N++ W  M+ G A +     A +++  M       N  S+  ++  
Sbjct: 14  LPYAISVFETIQEPNLLIWNTMLRGHASSSDPVSALEMYVRMVSLGHLPNSYSFPFLLKS 73

Query: 114 LIRNGELNEARKVFNSMPIK-----NVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVT 168
             ++    E R++ ++  +K     +     ++I+ Y     + +A  +F+    R+VV+
Sbjct: 74  CAKSKAFEEGRQI-HAQVLKLGCGLDRYVHTSLISMYARNGGLEDARKVFDASSHRDVVS 132

Query: 169 WTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGI-- 226
            T++I+GY   G+      +F  +  ++VVSW AMI G+  NG ++E+L LF EM     
Sbjct: 133 CTALITGYASRGDFRSARKVFDEITERDVVSWNAMITGYVENGRYEEALELFKEMMRTNV 192

Query: 227 -CDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWT-----SMIDGYLSVG 280
             D G   +V S  +  +G I  GR  +  +  D        S +     ++ID Y   G
Sbjct: 193 RPDEGTLVSVVSACAQ-SGSIELGR--QVHSWVDDDDDDHGFSSSLKIVNALIDLYSKCG 249

Query: 281 QVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFG 340
            V  A+ LF  +  +D V+W  +I G     L+ EA  LF EM   G  P + T   +  
Sbjct: 250 DVETAFGLFEGLSCKDVVSWNTLIGGYTHTNLYKEALLLFQEMLRSGECPNDVTLLSVLP 309

Query: 341 AAGATANIDLGRQIHCVLMKTES--ESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDL 398
           A      ID+GR IH  + K      ++  L   LI MYAKCG I+ A+ +F++M+ R L
Sbjct: 310 ACAHLGAIDIGRWIHVYIDKKLKGVTNETSLRTSLIDMYAKCGDIEAAHQVFNSMLYRSL 369

Query: 399 VSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNA 458
            SWN+M+ GF+ HG AN    +F  M  +   P+ +TF+G+LSACSH+GL+  G ++F +
Sbjct: 370 SSWNAMIFGFAMHGRANAAFDLFSRMRGNRVEPDDITFVGLLSACSHSGLLDLGRQIFKS 429

Query: 459 MFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNA 518
           M   Y + P  EHY  MI+LLG +G  KEAEE +  +P EPD  IW +LL AC    GN 
Sbjct: 430 MTQDYNLTPKLEHYGCMIDLLGHSGLFKEAEEMIHTMPMEPDGVIWCSLLKACKK-HGNL 488

Query: 519 EIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMR 578
           E+AE  A++L++++P N+ ++V+L NIYA +GR  +  ++R  +  KG++KVPGCS +  
Sbjct: 489 ELAESFAQKLIKIEPENSGSYVLLSNIYATAGRWEDVARVRGVLNGKGMKKVPGCSSIEV 548

Query: 579 NGGIQMFLSGDKIPAQVAEI 598
           +  +  F+ GDK+  +  EI
Sbjct: 549 DSVVHEFIIGDKLHPRRREI 568



 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 124/392 (31%), Positives = 185/392 (47%), Gaps = 31/392 (7%)

Query: 45  YNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNV 104
           + +++S + +NG L +AR++F+    R+VVS TA+I G A  G    ARK+F+E+ ER+V
Sbjct: 102 HTSLISMYARNGGLEDARKVFDASSHRDVVSCTALITGYASRGDFRSARKVFDEITERDV 161

Query: 105 VSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEER 164
           VSWN+M+ G + NG   EA ++F  M   NV      +   V  C    +I L      R
Sbjct: 162 VSWNAMITGYVENGRYEEALELFKEMMRTNVRPDEGTLVSVVSACAQSGSIEL-----GR 216

Query: 165 NVVTWT-----------------SMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGF 207
            V +W                  ++I  Y + G+VE  + LF  +  K+VVSW  +IGG+
Sbjct: 217 QVHSWVDDDDDDHGFSSSLKIVNALIDLYSKCGDVETAFGLFEGLSCKDVVSWNTLIGGY 276

Query: 208 AWNGFHKESLLLFIEM--KGICDNGNN--CNVQSCNSMINGYIRFGRLEEAQNLFDTVPV 263
                +KE+LLLF EM   G C N       + +C  +  G I  GR            V
Sbjct: 277 THTNLYKEALLLFQEMLRSGECPNDVTLLSVLPACAHL--GAIDIGRWIHVYIDKKLKGV 334

Query: 264 RDEISW-TSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFME 322
            +E S  TS+ID Y   G +  A+ +F++M  R   +W AMI G   +     A  LF  
Sbjct: 335 TNETSLRTSLIDMYAKCGDIEAAHQVFNSMLYRSLSSWNAMIFGFAMHGRANAAFDLFSR 394

Query: 323 MRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTES-ESDLILENCLISMYAKCG 381
           MR + V P + TF  L  A   +  +DLGRQI   + +  +    L    C+I +    G
Sbjct: 395 MRGNRVEPDDITFVGLLSACSHSGLLDLGRQIFKSMTQDYNLTPKLEHYGCMIDLLGHSG 454

Query: 382 VIDNAYNIFSNM-VSRDLVSWNSMVMGFSHHG 412
           +   A  +   M +  D V W S++     HG
Sbjct: 455 LFKEAEEMIHTMPMEPDGVIWCSLLKACKKHG 486



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 101/383 (26%), Positives = 167/383 (43%), Gaps = 95/383 (24%)

Query: 15  TSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVV 74
           TS I+ Y++ G +++A+ +F     R+VVS  A+++G+   G    AR++F+E+ ER+VV
Sbjct: 103 TSLISMYARNGGLEDARKVFDASSHRDVVSCTALITGYASRGDFRSARKVFDEITERDVV 162

Query: 75  SWTAMICGLADAGRVCEARKLFEEM------PE--------------------RNVVSW- 107
           SW AMI G  + GR  EA +LF+EM      P+                    R V SW 
Sbjct: 163 SWNAMITGYVENGRYEEALELFKEMMRTNVRPDEGTLVSVVSACAQSGSIELGRQVHSWV 222

Query: 108 ----------------NSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMM 151
                           N+++    + G++  A  +F  +  K+V+SWN +I GY    + 
Sbjct: 223 DDDDDDHGFSSSLKIVNALIDLYSKCGDVETAFGLFEGLSCKDVVSWNTLIGGYTHTNLY 282

Query: 152 GEAIVLFEEM----EERNVVT------------------W-------------------T 170
            EA++LF+EM    E  N VT                  W                   T
Sbjct: 283 KEALLLFQEMLRSGECPNDVTLLSVLPACAHLGAIDIGRWIHVYIDKKLKGVTNETSLRT 342

Query: 171 SMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNG 230
           S+I  Y + G++E  + +F  M  +++ SW AMI GFA +G    +  LF  M+G     
Sbjct: 343 SLIDMYAKCGDIEAAHQVFNSMLYRSLSSWNAMIFGFAMHGRANAAFDLFSRMRGNRVEP 402

Query: 231 NNCN----VQSCNSMINGYIRFGR--LEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSN 284
           ++      + +C+   +G +  GR   +     ++  P  +   +  MID     G    
Sbjct: 403 DDITFVGLLSACSH--SGLLDLGRQIFKSMTQDYNLTPKLEH--YGCMIDLLGHSGLFKE 458

Query: 285 AYYLFHNMP-DRDAVAWTAMISG 306
           A  + H MP + D V W +++  
Sbjct: 459 AEEMIHTMPMEPDGVIWCSLLKA 481



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 45/212 (21%), Positives = 99/212 (46%), Gaps = 8/212 (3%)

Query: 248 FGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPD----RDAVAWTAM 303
           F  L  A ++F+T+   + + W +M+ G+ S     +A  ++  M       ++ ++  +
Sbjct: 11  FDGLPYAISVFETIQEPNLLIWNTMLRGHASSSDPVSALEMYVRMVSLGHLPNSYSFPFL 70

Query: 304 ISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTES 363
           +    +++ F E   +  ++   G        + L         ++  R++        S
Sbjct: 71  LKSCAKSKAFEEGRQIHAQVLKLGCGLDRYVHTSLISMYARNGGLEDARKV----FDASS 126

Query: 364 ESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFES 423
             D++    LI+ YA  G   +A  +F  +  RD+VSWN+M+ G+  +G   E L++F+ 
Sbjct: 127 HRDVVSCTALITGYASRGDFRSARKVFDEITERDVVSWNAMITGYVENGRYEEALELFKE 186

Query: 424 MLESGTHPNSVTFLGILSACSHAGLVSRGWEL 455
           M+ +   P+  T + ++SAC+ +G +  G ++
Sbjct: 187 MMRTNVRPDEGTLVSVVSACAQSGSIELGRQV 218


>gi|357112521|ref|XP_003558057.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Brachypodium distachyon]
          Length = 656

 Score =  297 bits (760), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 196/598 (32%), Positives = 300/598 (50%), Gaps = 46/598 (7%)

Query: 33  LFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGR--VC 90
           L +L+   N  S N +L   L  G       L+  +P     S+T  I   A A R  V 
Sbjct: 62  LLRLVRYPNAFSCNTLLKSALIGGMPHLCLPLYASLPAPPD-SYTHPILAAACASRKDVI 120

Query: 91  EARKLFEEMPER----NVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYV 146
           E R++           N+   N+++      G L +AR+VF++ P+ + +SWN ++A YV
Sbjct: 121 EGRQVHAHAVSHGFGDNLYLRNALIFMYSACGCLWDARRVFDAGPVWDAVSWNTILAAYV 180

Query: 147 ECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGG 206
               + +A+ +F +M +RN    +SM+S + R G V+E   +F     +++ +WTAMI  
Sbjct: 181 HAGDVDQAVEVFAQMPKRNATAVSSMVSLFGRRGMVDEARRVFDAAECRDIFTWTAMISC 240

Query: 207 FAWNGFHKESLLLFIEMKG---------------------ICDNGNNC------------ 233
           F  N    E+L +F  M+                      +  NG  C            
Sbjct: 241 FERNDMFAEALHVFSCMRRERWHVDEPLMVSVVSACAQSEVIQNGQMCHGLVIRAGLCSQ 300

Query: 234 -NVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNM 292
            NVQ  N++I+ Y     +  A+ LFD+    D+ SW SMI GYL  G V +A  LF  M
Sbjct: 301 VNVQ--NALIHMYSSCLDVFAARRLFDSGECLDQYSWNSMIAGYLKNGHVKDAMALFSAM 358

Query: 293 PDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGR 352
           P++D V+W+ +ISG VQN    +A  +F  M+A G+ P   T   +  A    + ++ G+
Sbjct: 359 PNKDNVSWSTVISGCVQNNQSSDALTVFDNMQAQGIRPDEVTIVSVISACTNLSALEKGK 418

Query: 353 QIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHG 412
            +H  + + +    L+L   LI+MY KCG ++ A   F+ M  +    WN++++G + +G
Sbjct: 419 SVHEYIKQNQYYVSLVLGTSLINMYMKCGCLEAALEAFNIMEEKGTPCWNAVIVGLAMNG 478

Query: 413 LANETLKVFESMLESGT-HPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEH 471
           L  ++L +F  M  S T  PN +TF G+LSAC HAGLV  G   F  M   Y+I P   H
Sbjct: 479 LVMKSLDMFSEMEASDTATPNEITFTGVLSACRHAGLVDEGRHFFKLMQHRYQIVPNIRH 538

Query: 472 YVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLEL 531
           Y  M++LLGRAG +KEAE+ +  +P  PD   WGALLGAC +  G  E+ E   ++L+  
Sbjct: 539 YGCMVDLLGRAGYVKEAEDMIQSMPMSPDVPAWGALLGAC-WKHGEYEVGERVGRKLVNR 597

Query: 532 DPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGD 589
           DPL+     +L NIYA  G       LR  M  + V+KV G S ++++      L+GD
Sbjct: 598 DPLHDGFQTMLSNIYAKEGMWQSVDDLRGSMKQRHVQKVSGHS-VVKSSHSYEILAGD 654



 Score =  142 bits (358), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 108/441 (24%), Positives = 199/441 (45%), Gaps = 49/441 (11%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWT 77
           I  YS  G + +A+ +F   P  + VS+N +L+ ++  G + +A  +F +MP+RN  + +
Sbjct: 145 IFMYSACGCLWDARRVFDAGPVWDAVSWNTILAAYVHAGDVDQAVEVFAQMPKRNATAVS 204

Query: 78  AMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSM------- 130
           +M+      G V EAR++F+    R++ +W +M+    RN    EA  VF+ M       
Sbjct: 205 SMVSLFGRRGMVDEARRVFDAAECRDIFTWTAMISCFERNDMFAEALHVFSCMRRERWHV 264

Query: 131 --PI------------------------------KNVISWNAMIAGYVECCMMGEAIVLF 158
             P+                                V   NA+I  Y  C  +  A  LF
Sbjct: 265 DEPLMVSVVSACAQSEVIQNGQMCHGLVIRAGLCSQVNVQNALIHMYSSCLDVFAARRLF 324

Query: 159 EEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLL 218
           +  E  +  +W SMI+GY + G V++   LF  MP K+ VSW+ +I G   N    ++L 
Sbjct: 325 DSGECLDQYSWNSMIAGYLKNGHVKDAMALFSAMPNKDNVSWSTVISGCVQNNQSSDALT 384

Query: 219 LFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDE----ISWTSMID 274
           +F  M+     G   +  +  S+I+       LE+ +++ + +         +  TS+I+
Sbjct: 385 VFDNMQA---QGIRPDEVTIVSVISACTNLSALEKGKSVHEYIKQNQYYVSLVLGTSLIN 441

Query: 275 GYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVP-PLNA 333
            Y+  G +  A   F+ M ++    W A+I GL  N L +++  +F EM A     P   
Sbjct: 442 MYMKCGCLEAALEAFNIMEEKGTPCWNAVIVGLAMNGLVMKSLDMFSEMEASDTATPNEI 501

Query: 334 TFSVLFGAAGATANIDLGRQIHCVLM-KTESESDLILENCLISMYAKCGVIDNAYNIFSN 392
           TF+ +  A      +D GR    ++  + +   ++    C++ +  + G +  A ++  +
Sbjct: 502 TFTGVLSACRHAGLVDEGRHFFKLMQHRYQIVPNIRHYGCMVDLLGRAGYVKEAEDMIQS 561

Query: 393 M-VSRDLVSWNSMVMGFSHHG 412
           M +S D+ +W +++     HG
Sbjct: 562 MPMSPDVPAWGALLGACWKHG 582



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 88/382 (23%), Positives = 157/382 (41%), Gaps = 86/382 (22%)

Query: 7   PKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFE 66
           PK     ++S ++ + +RG +DEA+ +F     R++ ++ AM+S F +N   +EA  +F 
Sbjct: 196 PKRNATAVSSMVSLFGRRGMVDEARRVFDAAECRDIFTWTAMISCFERNDMFAEALHVFS 255

Query: 67  EM-------------------PERNVVSWTAMICGLADAGRVCE---------------- 91
            M                    +  V+    M  GL     +C                 
Sbjct: 256 CMRRERWHVDEPLMVSVVSACAQSEVIQNGQMCHGLVIRAGLCSQVNVQNALIHMYSSCL 315

Query: 92  ----ARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVE 147
               AR+LF+     +  SWNSM+ G ++NG + +A  +F++MP K+ +SW+ +I+G V+
Sbjct: 316 DVFAARRLFDSGECLDQYSWNSMIAGYLKNGHVKDAMALFSAMPNKDNVSWSTVISGCVQ 375

Query: 148 CCMMGEAIVLFEEMEERNV---------------------------------------VT 168
                +A+ +F+ M+ + +                                       V 
Sbjct: 376 NNQSSDALTVFDNMQAQGIRPDEVTIVSVISACTNLSALEKGKSVHEYIKQNQYYVSLVL 435

Query: 169 WTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICD 228
            TS+I+ Y + G +E     F  M  K    W A+I G A NG   +SL +F EM+    
Sbjct: 436 GTSLINMYMKCGCLEAALEAFNIMEEKGTPCWNAVIVGLAMNGLVMKSLDMFSEMEA--S 493

Query: 229 NGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEI-----SWTSMIDGYLSVGQVS 283
           +    N  +   +++     G ++E ++ F  +  R +I      +  M+D     G V 
Sbjct: 494 DTATPNEITFTGVLSACRHAGLVDEGRHFFKLMQHRYQIVPNIRHYGCMVDLLGRAGYVK 553

Query: 284 NAYYLFHNMP-DRDAVAWTAMI 304
            A  +  +MP   D  AW A++
Sbjct: 554 EAEDMIQSMPMSPDVPAWGALL 575



 Score = 59.3 bits (142), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 41/141 (29%), Positives = 68/141 (48%), Gaps = 11/141 (7%)

Query: 15  TSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPER--- 71
           TS I  Y K G ++ A   F +M ++    +NA++ G   NG + ++  +F EM      
Sbjct: 437 TSLINMYMKCGCLEAALEAFNIMEEKGTPCWNAVIVGLAMNGLVMKSLDMFSEMEASDTA 496

Query: 72  --NVVSWTAMICGLADAGRVCEARKLFEEMPER-----NVVSWNSMVVGLIRNGELNEAR 124
             N +++T ++     AG V E R  F+ M  R     N+  +  MV  L R G + EA 
Sbjct: 497 TPNEITFTGVLSACRHAGLVDEGRHFFKLMQHRYQIVPNIRHYGCMVDLLGRAGYVKEAE 556

Query: 125 KVFNSMPIK-NVISWNAMIAG 144
            +  SMP+  +V +W A++  
Sbjct: 557 DMIQSMPMSPDVPAWGALLGA 577


>gi|297743099|emb|CBI35966.3| unnamed protein product [Vitis vinifera]
          Length = 624

 Score =  297 bits (760), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 168/467 (35%), Positives = 259/467 (55%), Gaps = 11/467 (2%)

Query: 139 NAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMP-RKNV 197
           N++I  Y +C  +  A   +++M  R+ V+W S+ISGY + G+VE+   LF  MP R+NV
Sbjct: 132 NSLIDMYCKCFRLDSARNFWDDMGFRDEVSWNSIISGYVQWGQVEKARDLFEEMPMRRNV 191

Query: 198 VSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNN------CNVQSCNSMINGYIRFGRL 251
           V WTAMI G+   G   E L LF +M    D          C + +C+++ N     GR 
Sbjct: 192 VCWTAMINGYGKEGDFVEMLSLFRQMLVSADEVQPNAATMVCLLSACSTLCN--YEVGRF 249

Query: 252 EEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNE 311
                  + +P+ + I  T++ID Y   G V  A+ +F  +  ++  +W A+I+G VQ  
Sbjct: 250 LSVFIDVNKIPL-NTILVTALIDMYSKCGDVEKAWRIFDGVSCKNLPSWNAIITGCVQGG 308

Query: 312 LFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILEN 371
           L  EA  L+  M+A  V P   T   +  A      ++LGR++H  L +   + ++IL  
Sbjct: 309 LLEEAIDLYRHMKAQSVKPNEITLVNVLSACAGLGALELGREVHLYLGRNGLDLNVILAT 368

Query: 372 CLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHP 431
            L+ MYAKCG ID+A  IF     +D+  WN+M++G ++HG   ++L VF  M+ +G  P
Sbjct: 369 ALVDMYAKCGKIDDACLIFVKTSEKDVALWNAMILGLAYHGDGRDSLAVFSQMVRAGVQP 428

Query: 432 NSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEF 491
           N VTF+G+LSAC+H+GLV  G   F++M D + + P  EHY  M++LLGRAG +KEA E 
Sbjct: 429 NDVTFIGVLSACNHSGLVEEGRVQFSSMADKHGLSPKLEHYACMVDLLGRAGHLKEAYEL 488

Query: 492 VLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGR 551
           V  +   PD  IWGALL AC     N E+A+  ++ ++     N    ++L NIYA+SGR
Sbjct: 489 VQNMLIPPDSIIWGALLSACRI-HRNLELADKISETIMASQDPNIGFCILLSNIYASSGR 547

Query: 552 HVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
             +  ++R  +  K ++K  GCSW+  +G +  F+  D    +  EI
Sbjct: 548 WKDVARVRRQVKEKRIKKPSGCSWVEVDGVVHRFVVEDTTHLKSGEI 594



 Score =  155 bits (392), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 113/413 (27%), Positives = 193/413 (46%), Gaps = 25/413 (6%)

Query: 110 MVVGLIRNG-ELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVT 168
           M++ L+R    L +  ++     I  +     +I   ++   +  A  + ++       +
Sbjct: 1   MLLSLLRTATSLTQIHQIHAQTLIHGLPLQTHLIPKLIDLHSIDYARFVLDQTPSPTDFS 60

Query: 169 WTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKG--- 225
           W S+I  Y   G  +    L+ +M R +          F +    K    L   ++G   
Sbjct: 61  WNSLIRAYTVHGSPQNSLFLYLKMLRSSTKP-----SNFTFPFVLKACSTLGSVLEGEQI 115

Query: 226 ---ICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQV 282
              +   G   ++  CNS+I+ Y +  RL+ A+N +D +  RDE+SW S+I GY+  GQV
Sbjct: 116 HTHVLRLGFGSDLFVCNSLIDMYCKCFRLDSARNFWDDMGFRDEVSWNSIISGYVQWGQV 175

Query: 283 SNAYYLFHNMP-DRDAVAWTAMISGLVQNELFVEATYLFMEM--RAHGVPPLNATFSVLF 339
             A  LF  MP  R+ V WTAMI+G  +   FVE   LF +M   A  V P  AT   L 
Sbjct: 176 EKARDLFEEMPMRRNVVCWTAMINGYGKEGDFVEMLSLFRQMLVSADEVQPNAATMVCLL 235

Query: 340 GAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLV 399
            A     N ++GR +   +   +   + IL   LI MY+KCG ++ A+ IF  +  ++L 
Sbjct: 236 SACSTLCNYEVGRFLSVFIDVNKIPLNTILVTALIDMYSKCGDVEKAWRIFDGVSCKNLP 295

Query: 400 SWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAM 459
           SWN+++ G    GL  E + ++  M      PN +T + +LSAC+  G +  G E+    
Sbjct: 296 SWNAIITGCVQGGLLEEAIDLYRHMKAQSVKPNEITLVNVLSACAGLGALELGREVH--- 352

Query: 460 FDVYKIQPGPEHYV----SMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALL 508
             +Y  + G +  V    +++++  + GKI +A    ++   E D  +W A++
Sbjct: 353 --LYLGRNGLDLNVILATALVDMYAKCGKIDDACLIFVKTS-EKDVALWNAMI 402



 Score =  132 bits (332), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 108/407 (26%), Positives = 192/407 (47%), Gaps = 27/407 (6%)

Query: 46  NAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMP-ERNV 104
           N+++  + +  RL  AR  +++M  R+ VSW ++I G    G+V +AR LFEEMP  RNV
Sbjct: 132 NSLIDMYCKCFRLDSARNFWDDMGFRDEVSWNSIISGYVQWGQVEKARDLFEEMPMRRNV 191

Query: 105 VSWNSMVVGLIRNGELNEARKVFNSMPIK-NVISWNA--MIAGYVECCMM-----GEAIV 156
           V W +M+ G  + G+  E   +F  M +  + +  NA  M+     C  +     G  + 
Sbjct: 192 VCWTAMINGYGKEGDFVEMLSLFRQMLVSADEVQPNAATMVCLLSACSTLCNYEVGRFLS 251

Query: 157 LFEEMEE--RNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHK 214
           +F ++ +   N +  T++I  Y + G+VE+ + +F  +  KN+ SW A+I G    G  +
Sbjct: 252 VFIDVNKIPLNTILVTALIDMYSKCGDVEKAWRIFDGVSCKNLPSWNAIITGCVQGGLLE 311

Query: 215 ESLLLFIEMKGICDNGNNCN----VQSCNSMINGYIRFGR---LEEAQNLFDTVPVRDEI 267
           E++ L+  MK      N       + +C  +  G +  GR   L   +N  D     + I
Sbjct: 312 EAIDLYRHMKAQSVKPNEITLVNVLSACAGL--GALELGREVHLYLGRNGLDL----NVI 365

Query: 268 SWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHG 327
             T+++D Y   G++ +A  +F    ++D   W AMI GL  +    ++  +F +M   G
Sbjct: 366 LATALVDMYAKCGKIDDACLIFVKTSEKDVALWNAMILGLAYHGDGRDSLAVFSQMVRAG 425

Query: 328 VPPLNATFSVLFGAAGATANIDLGR-QIHCVLMKTESESDLILENCLISMYAKCGVIDNA 386
           V P + TF  +  A   +  ++ GR Q   +  K      L    C++ +  + G +  A
Sbjct: 426 VQPNDVTFIGVLSACNHSGLVEEGRVQFSSMADKHGLSPKLEHYACMVDLLGRAGHLKEA 485

Query: 387 YNIFSNM-VSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPN 432
           Y +  NM +  D + W +++     H       K+ E+++ S   PN
Sbjct: 486 YELVQNMLIPPDSIIWGALLSACRIHRNLELADKISETIMAS-QDPN 531



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 97/378 (25%), Positives = 165/378 (43%), Gaps = 90/378 (23%)

Query: 16  SSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMP-ERNVV 74
           S I  Y K   +D A+  +  M  R+ VS+N+++SG++Q G++ +AR LFEEMP  RNVV
Sbjct: 133 SLIDMYCKCFRLDSARNFWDDMGFRDEVSWNSIISGYVQWGQVEKARDLFEEMPMRRNVV 192

Query: 75  SWTAMICGLADAGRVCEARKLFEEM----------------------------------- 99
            WTAMI G    G   E   LF +M                                   
Sbjct: 193 CWTAMINGYGKEGDFVEMLSLFRQMLVSADEVQPNAATMVCLLSACSTLCNYEVGRFLSV 252

Query: 100 -PERNVVSWNSMVVGLI-----RNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGE 153
             + N +  N+++V  +     + G++ +A ++F+ +  KN+ SWNA+I G V+  ++ E
Sbjct: 253 FIDVNKIPLNTILVTALIDMYSKCGDVEKAWRIFDGVSCKNLPSWNAIITGCVQGGLLEE 312

Query: 154 AIVLFEEMEER---------------------------------------NVVTWTSMIS 174
           AI L+  M+ +                                       NV+  T+++ 
Sbjct: 313 AIDLYRHMKAQSVKPNEITLVNVLSACAGLGALELGREVHLYLGRNGLDLNVILATALVD 372

Query: 175 GYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCN 234
            Y + G++++   +F +   K+V  W AMI G A++G  ++SL +F +M       N+  
Sbjct: 373 MYAKCGKIDDACLIFVKTSEKDVALWNAMILGLAYHGDGRDSLAVFSQMVRAGVQPNDVT 432

Query: 235 VQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEIS-----WTSMIDGYLSVGQVSNAYYLF 289
                S  N     G +EE +  F ++  +  +S     +  M+D     G +  AY L 
Sbjct: 433 FIGVLSACN---HSGLVEEGRVQFSSMADKHGLSPKLEHYACMVDLLGRAGHLKEAYELV 489

Query: 290 HNM-PDRDAVAWTAMISG 306
            NM    D++ W A++S 
Sbjct: 490 QNMLIPPDSIIWGALLSA 507



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 57/243 (23%), Positives = 110/243 (45%), Gaps = 51/243 (20%)

Query: 14  LTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPER-- 71
           +T+ I  YSK G +++A  +F  +  +N+ S+NA+++G +Q G L EA  L+  M  +  
Sbjct: 266 VTALIDMYSKCGDVEKAWRIFDGVSCKNLPSWNAIITGCVQGGLLEEAIDLYRHMKAQSV 325

Query: 72  -------------------------------------NVVSWTAMICGLADAGRVCEARK 94
                                                NV+  TA++   A  G++ +A  
Sbjct: 326 KPNEITLVNVLSACAGLGALELGREVHLYLGRNGLDLNVILATALVDMYAKCGKIDDACL 385

Query: 95  LFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECC----M 150
           +F +  E++V  WN+M++GL  +G+  ++  VF+ M    V   +    G +  C    +
Sbjct: 386 IFVKTSEKDVALWNAMILGLAYHGDGRDSLAVFSQMVRAGVQPNDVTFIGVLSACNHSGL 445

Query: 151 MGEAIVLFEEMEERNVVT-----WTSMISGYCRAGEVEEGYCLFRRM--PRKNVVSWTAM 203
           + E  V F  M +++ ++     +  M+    RAG ++E Y L + M  P  +++ W A+
Sbjct: 446 VEEGRVQFSSMADKHGLSPKLEHYACMVDLLGRAGHLKEAYELVQNMLIPPDSII-WGAL 504

Query: 204 IGG 206
           +  
Sbjct: 505 LSA 507



 Score = 55.5 bits (132), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 56/207 (27%), Positives = 91/207 (43%), Gaps = 16/207 (7%)

Query: 353 QIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHG 412
           QIH +  +T     L L+  LI        ID A  +     S    SWNS++  ++ HG
Sbjct: 14  QIHQIHAQTLIHG-LPLQTHLIPKLIDLHSIDYARFVLDQTPSPTDFSWNSLIRAYTVHG 72

Query: 413 LANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHY 472
               +L ++  ML S T P++ TF  +L ACS  G V  G ++      V ++  G + +
Sbjct: 73  SPQNSLFLYLKMLRSSTKPSNFTFPFVLKACSTLGSVLEGEQIHT---HVLRLGFGSDLF 129

Query: 473 V--SMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCE-GNAEIAEHAAKRLL 529
           V  S+I++  +  ++  A  F   + F  D   W +++   G+ + G  E     A+ L 
Sbjct: 130 VCNSLIDMYCKCFRLDSARNFWDDMGFR-DEVSWNSIIS--GYVQWGQVE----KARDLF 182

Query: 530 ELDPL--NAPAHVVLCNIYAASGRHVE 554
           E  P+  N      + N Y   G  VE
Sbjct: 183 EEMPMRRNVVCWTAMINGYGKEGDFVE 209



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 47/184 (25%), Positives = 89/184 (48%), Gaps = 15/184 (8%)

Query: 4   RNHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARR 63
           RN     V+  T+ +  Y+K G ID+A  +F    +++V  +NAM+ G   +G   ++  
Sbjct: 357 RNGLDLNVILATALVDMYAKCGKIDDACLIFVKTSEKDVALWNAMILGLAYHGDGRDSLA 416

Query: 64  LFEEM----PERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVS-----WNSMVVGL 114
           +F +M     + N V++  ++     +G V E R  F  M +++ +S     +  MV  L
Sbjct: 417 VFSQMVRAGVQPNDVTFIGVLSACNHSGLVEEGRVQFSSMADKHGLSPKLEHYACMVDLL 476

Query: 115 IRNGELNEARKVFNSMPI-KNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMI 173
            R G L EA ++  +M I  + I W A+++     C +   + L +++ E  + +    I
Sbjct: 477 GRAGHLKEAYELVQNMLIPPDSIIWGALLSA----CRIHRNLELADKISETIMASQDPNI 532

Query: 174 SGYC 177
            G+C
Sbjct: 533 -GFC 535


>gi|356541109|ref|XP_003539025.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g18840-like [Glycine max]
          Length = 681

 Score =  297 bits (760), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 191/646 (29%), Positives = 331/646 (51%), Gaps = 67/646 (10%)

Query: 5   NHPKSLVVHLTSSITK-------YSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGR 57
           +H +++   L SSI         YS  G + EA  LF  MP  NV S+NA++  +++   
Sbjct: 5   DHVQAIKSGLVSSIFTCNQLIHLYSNHGLLQEAHKLFDEMPHPNVFSWNAIIMAYIKAHN 64

Query: 58  LSEARRLFEEMPERNVVSWTAMICG-LADAGRVCEARKLFEEMPE-RNVVSWNSMVVGLI 115
           L++AR LF+    R++VS+ +++   +   G   EA  LF  M   R+ +  + + +   
Sbjct: 65  LTQARALFDSASHRDLVSYNSLLSAYVGSDGYETEALDLFTRMQSARDTIGIDEITL--- 121

Query: 116 RNGELNEARKV--------FNSMPIKNV-----ISWNAMIAGYVECCMMGEAIVLFEEME 162
               LN A K+         +S  +K        + +++I  Y +C    EA  LF   +
Sbjct: 122 -TNMLNLAAKLRVLCYGKQMHSYMVKTANDLSKFALSSLIDMYSKCGCFQEACNLFGSCD 180

Query: 163 ER-NVVTWTSMISGYCRAGEVEEGYCLFRRMPR-KNVVSWTAMIGGFAWNGFHKESLLLF 220
           E  ++V+  +M++  CR G+++    +F + P  K+ VSW  +I G++ NG+ ++SL  F
Sbjct: 181 EMVDLVSKNAMVAACCREGKMDMALNVFWKNPELKDTVSWNTLIAGYSQNGYMEKSLTFF 240

Query: 221 IEM--KGICDNG-------NNCNVQSCNSM-----------------------INGYIRF 248
           +EM   GI  N        N C+   C+ +                       ++ Y + 
Sbjct: 241 VEMIENGIDFNEHTLASVLNACSALKCSKLGKSVHAWVLKKGYSSNQFISSGVVDFYSKC 300

Query: 249 GRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLV 308
           G +  A+ ++  + ++   +  S+I  Y S G ++ A  LF ++ +R++V WTA+ SG V
Sbjct: 301 GNIRYAELVYAKIGIKSPFAVASLIAAYSSQGNMTEAQRLFDSLLERNSVVWTALCSGYV 360

Query: 309 QNELFVEATYLFMEMRAHG--VPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESD 366
           +++       LF E R     VP      S+L GA    A++ LG+QIH  +++   + D
Sbjct: 361 KSQQCEAVFKLFREFRTKEALVPDAMIIVSIL-GACAIQADLSLGKQIHAYILRMRFKVD 419

Query: 367 LILENCLISMYAKCGVIDNAYNIFSNMVS--RDLVSWNSMVMGFSHHGLANETLKVFESM 424
             L + L+ MY+KCG +  A  +F  +    RD + +N ++ G++HHG  N+ +++F+ M
Sbjct: 420 KKLLSSLVDMYSKCGNVAYAEKLFRLVTDSDRDAILYNVIIAGYAHHGFENKAIELFQEM 479

Query: 425 LESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGK 484
           L     P++VTF+ +LSAC H GLV  G + F +M + Y + P   HY  M+++ GRA +
Sbjct: 480 LNKSVKPDAVTFVALLSACRHRGLVELGEQFFMSM-EHYNVLPEIYHYACMVDMYGRANQ 538

Query: 485 IKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCN 544
           +++A EF+ ++P + D  IWGA L AC     +A + + A + LL+++  N   +V L N
Sbjct: 539 LEKAVEFMRKIPIKIDATIWGAFLNACQM-SSDAALVKQAEEELLKVEADNGSRYVQLAN 597

Query: 545 IYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDK 590
            YAA G+  E  ++R  M     +K+ GCSW+    GI +F SGD+
Sbjct: 598 AYAAKGKWDEMGRIRKKMRGHEAKKLAGCSWIYVENGIHVFTSGDR 643


>gi|297743367|emb|CBI36234.3| unnamed protein product [Vitis vinifera]
          Length = 906

 Score =  296 bits (759), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 194/635 (30%), Positives = 314/635 (49%), Gaps = 88/635 (13%)

Query: 46  NAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMP----- 100
           NA+LS F++ G L EA  +F +M ER++ SW  ++ G A AG   EA  L+  M      
Sbjct: 133 NALLSMFVRFGDLVEAWYVFGKMAERDLFSWNVLVGGYAKAGYFDEALNLYHRMLWVGIR 192

Query: 101 ----------------------------------ERNVVSWNSMVVGLIRNGELNEARKV 126
                                             E +V   N+++   ++ G++  AR V
Sbjct: 193 PDVYTFPCVLRTCGGLPDLARGREVHLHVIRYGFESDVDVVNALITMYVKCGDIFSARLV 252

Query: 127 FNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEE----RNVVTWTSMIS-----GYC 177
           F+ MP ++ ISWNAMI+GY E  +  E + LF  M E     +++T TS+IS     G  
Sbjct: 253 FDRMPRRDRISWNAMISGYFENDVCLEGLRLFFMMREFFVDPDLMTMTSVISACEALGDE 312

Query: 178 RAGEVEEGYCL------------------------------FRRMPRKNVVSWTAMIGGF 207
           R G    GY +                              F +M  K++VSWTAMI G+
Sbjct: 313 RLGREVHGYVIKTGFVAEVSVNNSLIQMHSSVGCWDEAEMVFSKMEFKDLVSWTAMISGY 372

Query: 208 AWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEI 267
             NG  ++++  +  M+      +   + S  S   G    G L++   L +        
Sbjct: 373 EKNGLPEKAVETYTIMEHEGVVPDEITIASVLSACAG---LGLLDKGIMLHEFADRTGLT 429

Query: 268 SWT----SMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEM 323
           S+     S+ID Y     +  A  +FH +P+++ ++WT++I GL  N    EA + F +M
Sbjct: 430 SYVIVANSLIDMYSKCRCIDKALEVFHRIPNKNVISWTSIILGLRLNYRSFEALFFFQQM 489

Query: 324 RAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVI 383
               + P + T   +  A      +  G++IH   ++T    D  L N L+ MY +CG +
Sbjct: 490 -ILSLKPNSVTLVSVLSACARIGALSCGKEIHAHALRTGLGFDGFLPNALLDMYVRCGRM 548

Query: 384 DNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSAC 443
           + A+N F N   +D+ SWN ++ G++  G     +++F  M+ES  +P+ +TF  +L AC
Sbjct: 549 EPAWNQF-NSCEKDVASWNILLTGYAQQGKGGLAVELFHKMIESDVNPDEITFTSLLCAC 607

Query: 444 SHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRI 503
           S +G+V+ G E F +M   + I P  +HY S+++LLGRAG++++A EF+ ++P +PD  I
Sbjct: 608 SRSGMVTDGLEYFESMEHKFHIAPNLKHYASVVDLLGRAGRLEDAYEFIKKMPIDPDPAI 667

Query: 504 WGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMG 563
           WGALL AC   + N E+ E AA+ + E+D  +   +++LCN+YA SG+  E  ++R  M 
Sbjct: 668 WGALLNACRIYQ-NVELGELAAQHIFEMDTKSVGYYILLCNLYADSGKWDEVARVRKIMR 726

Query: 564 LKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
              +   PGCSW+   G +  FL+GD    Q+ EI
Sbjct: 727 ENRLTVDPGCSWVEVAGQVHAFLTGDDFHPQIKEI 761



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 90/347 (25%), Positives = 153/347 (44%), Gaps = 54/347 (15%)

Query: 16  SSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVS 75
           S I  +S  G  DEA+ +F  M  +++VS+ AM+SG+ +NG   +A   +  M    VV 
Sbjct: 336 SLIQMHSSVGCWDEAEMVFSKMEFKDLVSWTAMISGYEKNGLPEKAVETYTIMEHEGVVP 395

Query: 76  WTAMICGLADAGR---VCEARKLFEEMPERN-----VVSWNSMVVGLIRNGELNEARKVF 127
               I  +  A     + +   +  E  +R      V+  NS++    +   +++A +VF
Sbjct: 396 DEITIASVLSACAGLGLLDKGIMLHEFADRTGLTSYVIVANSLIDMYSKCRCIDKALEVF 455

Query: 128 NSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEM---EERNVVTWTSMISGYCRAGEVEE 184
           + +P KNVISW ++I G        EA+  F++M    + N VT  S++S   R G +  
Sbjct: 456 HRIPNKNVISWTSIILGLRLNYRSFEALFFFQQMILSLKPNSVTLVSVLSACARIGALSC 515

Query: 185 GYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMING 244
           G            +   A+  G  ++GF                          N++++ 
Sbjct: 516 G----------KEIHAHALRTGLGFDGFLP------------------------NALLDM 541

Query: 245 YIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDA----VAW 300
           Y+R GR+E A N F++   +D  SW  ++ GY   G+   A  LFH M + D     + +
Sbjct: 542 YVRCGRMEPAWNQFNSCE-KDVASWNILLTGYAQQGKGGLAVELFHKMIESDVNPDEITF 600

Query: 301 TAMISGLVQNELFVEATYLF--MEMRAHGVPPLNATFSV--LFGAAG 343
           T+++    ++ +  +    F  ME + H  P L    SV  L G AG
Sbjct: 601 TSLLCACSRSGMVTDGLEYFESMEHKFHIAPNLKHYASVVDLLGRAG 647



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 71/287 (24%), Positives = 125/287 (43%), Gaps = 46/287 (16%)

Query: 1   MSERNHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSE 60
            ++R    S V+   S I  YSK   ID+A  +F  +P +NV+S+ +++ G   N R  E
Sbjct: 422 FADRTGLTSYVIVANSLIDMYSKCRCIDKALEVFHRIPNKNVISWTSIILGLRLNYRSFE 481

Query: 61  ARRLFEEMP---ERNVVSWTAMICGLADAGRVCEARKLFEEMPERNV----VSWNSMVVG 113
           A   F++M    + N V+  +++   A  G +   +++        +       N+++  
Sbjct: 482 ALFFFQQMILSLKPNSVTLVSVLSACARIGALSCGKEIHAHALRTGLGFDGFLPNALLDM 541

Query: 114 LIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNV----VTW 169
            +R G +  A   FNS   K+V SWN ++ GY +    G A+ LF +M E +V    +T+
Sbjct: 542 YVRCGRMEPAWNQFNSCE-KDVASWNILLTGYAQQGKGGLAVELFHKMIESDVNPDEITF 600

Query: 170 TSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDN 229
           TS++    R+G V +G   F  M  K                FH                
Sbjct: 601 TSLLCACSRSGMVTDGLEYFESMEHK----------------FHIAP------------- 631

Query: 230 GNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVR-DEISWTSMIDG 275
               N++   S+++   R GRLE+A      +P+  D   W ++++ 
Sbjct: 632 ----NLKHYASVVDLLGRAGRLEDAYEFIKKMPIDPDPAIWGALLNA 674



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 51/171 (29%), Positives = 84/171 (49%), Gaps = 12/171 (7%)

Query: 351 GRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSH 410
           G ++H  + KT +   + L N L+SM+ + G +  A+ +F  M  RDL SWN +V G++ 
Sbjct: 113 GSRVHSYVSKTVTRLGVRLGNALLSMFVRFGDLVEAWYVFGKMAERDLFSWNVLVGGYAK 172

Query: 411 HGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPE 470
            G  +E L ++  ML  G  P+  TF  +L  C     ++RG E+      ++ I+ G E
Sbjct: 173 AGYFDEALNLYHRMLWVGIRPDVYTFPCVLRTCGGLPDLARGREV-----HLHVIRYGFE 227

Query: 471 HYVSMINLL----GRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGN 517
             V ++N L     + G I  A     R+P   D   W A++   G+ E +
Sbjct: 228 SDVDVVNALITMYVKCGDIFSARLVFDRMP-RRDRISWNAMIS--GYFEND 275


>gi|225436612|ref|XP_002275537.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g27110-like [Vitis vinifera]
          Length = 694

 Score =  296 bits (759), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 175/528 (33%), Positives = 273/528 (51%), Gaps = 39/528 (7%)

Query: 91  EARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCM 150
           +A KLF+EMPER+V SWN+++    ++G+  +A ++F  M +      +  +   +  C 
Sbjct: 159 DAIKLFDEMPERDVASWNNVISCYYQDGQPEKALELFEEMKVSGFKPDSVTLTTVISSCA 218

Query: 151 MGEAIVLFEEMEERNV--------VTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTA 202
               +   +E+    V           ++++  Y + G +E    +F ++ RKNVVSW +
Sbjct: 219 RLLDLERGKEIHMELVRSGFALDGFVSSALVDMYGKCGCLEMAKEVFEQIQRKNVVSWNS 278

Query: 203 MIGGFAWNGFHKESLLLFIEM--KGI-------------CDNGNNCNVQSCNSMINGYIR 247
           MI G++  G  K  + LF  M  +GI             C    N  +      I+GYI 
Sbjct: 279 MIAGYSLKGDSKSCIELFRRMDEEGIRPTLTTLSSILMACSRSVNLQL---GKFIHGYII 335

Query: 248 FGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGL 307
             R+E            D    +S+ID Y   G + +A  +F NMP  + V+W  MISG 
Sbjct: 336 RNRVEA-----------DIFVNSSLIDLYFKCGNIGSAENVFQNMPKTNVVSWNVMISGY 384

Query: 308 VQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDL 367
           V+   ++EA  +F +MR  GV P   TF+ +  A    A ++ G++IH  +++++ E + 
Sbjct: 385 VKVGSYLEALVIFTDMRKAGVKPDAITFTSVLPACSQLAVLEKGKEIHNFIIESKLEINE 444

Query: 368 ILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLES 427
           ++   L+ MYAKCG +D A +IF+ +  RD VSW SM+  +  HG A E LK+FE M +S
Sbjct: 445 VVMGALLDMYAKCGAVDEALHIFNQLPERDFVSWTSMIAAYGSHGQAFEALKLFEKMQQS 504

Query: 428 GTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKE 487
              P+ VTFL ILSACSHAGLV  G   FN M   Y  +P  EHY  +I+LLGR G+++E
Sbjct: 505 DAKPDKVTFLAILSACSHAGLVDEGCYYFNQMIAEYGFKPAVEHYSCLIDLLGRVGRLRE 564

Query: 488 AEEFVLRLP-FEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIY 546
           A E + R P    D  +   L  AC       ++ E   + L+E DP +   +++L N+Y
Sbjct: 565 AYEILQRTPDIREDVGLLSTLFSACHL-HKKLDLGEQIGRLLIEKDPDDPSTYIILSNMY 623

Query: 547 AASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQ 594
           A+  +  E  K+R+ +   G++K PGCSW+     I  F+  DK   Q
Sbjct: 624 ASVKKWDEVRKVRLKIKELGLKKNPGCSWIEVGKRIHPFVVEDKSHPQ 671



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 106/432 (24%), Positives = 198/432 (45%), Gaps = 55/432 (12%)

Query: 11  VVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMP- 69
           VV ++S++  Y+K    ++A  LF  MP+R+V S+N ++S + Q+G+  +A  LFEEM  
Sbjct: 141 VVVMSSAVGMYAKCNVFEDAIKLFDEMPERDVASWNNVISCYYQDGQPEKALELFEEMKV 200

Query: 70  ---ERNVVSWTAMI---------------------CGLADAGRVCE-------------- 91
              + + V+ T +I                      G A  G V                
Sbjct: 201 SGFKPDSVTLTTVISSCARLLDLERGKEIHMELVRSGFALDGFVSSALVDMYGKCGCLEM 260

Query: 92  ARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECC-- 149
           A+++FE++  +NVVSWNSM+ G    G+     ++F  M  + +      ++  +  C  
Sbjct: 261 AKEVFEQIQRKNVVSWNSMIAGYSLKGDSKSCIELFRRMDEEGIRPTLTTLSSILMACSR 320

Query: 150 ----MMGEAI--VLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAM 203
                +G+ I   +     E ++   +S+I  Y + G +     +F+ MP+ NVVSW  M
Sbjct: 321 SVNLQLGKFIHGYIIRNRVEADIFVNSSLIDLYFKCGNIGSAENVFQNMPKTNVVSWNVM 380

Query: 204 IGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPV 263
           I G+   G + E+L++F +M+     G   +  +  S++    +   LE+ + + + +  
Sbjct: 381 ISGYVKVGSYLEALVIFTDMR---KAGVKPDAITFTSVLPACSQLAVLEKGKEIHNFIIE 437

Query: 264 R----DEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYL 319
                +E+   +++D Y   G V  A ++F+ +P+RD V+WT+MI+    +    EA  L
Sbjct: 438 SKLEINEVVMGALLDMYAKCGAVDEALHIFNQLPERDFVSWTSMIAAYGSHGQAFEALKL 497

Query: 320 FMEMRAHGVPPLNATFSVLFGAAGATANIDLG-RQIHCVLMKTESESDLILENCLISMYA 378
           F +M+     P   TF  +  A      +D G    + ++ +   +  +   +CLI +  
Sbjct: 498 FEKMQQSDAKPDKVTFLAILSACSHAGLVDEGCYYFNQMIAEYGFKPAVEHYSCLIDLLG 557

Query: 379 KCGVIDNAYNIF 390
           + G +  AY I 
Sbjct: 558 RVGRLREAYEIL 569



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 64/232 (27%), Positives = 113/232 (48%), Gaps = 1/232 (0%)

Query: 265 DEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMR 324
           D +  +S +  Y       +A  LF  MP+RD  +W  +IS   Q+    +A  LF EM+
Sbjct: 140 DVVVMSSAVGMYAKCNVFEDAIKLFDEMPERDVASWNNVISCYYQDGQPEKALELFEEMK 199

Query: 325 AHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVID 384
             G  P + T + +  +     +++ G++IH  L+++    D  + + L+ MY KCG ++
Sbjct: 200 VSGFKPDSVTLTTVISSCARLLDLERGKEIHMELVRSGFALDGFVSSALVDMYGKCGCLE 259

Query: 385 NAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACS 444
            A  +F  +  +++VSWNSM+ G+S  G +   +++F  M E G  P   T   IL ACS
Sbjct: 260 MAKEVFEQIQRKNVVSWNSMIAGYSLKGDSKSCIELFRRMDEEGIRPTLTTLSSILMACS 319

Query: 445 HAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLP 496
            +  +  G +  +      +++       S+I+L  + G I  AE     +P
Sbjct: 320 RSVNLQLG-KFIHGYIIRNRVEADIFVNSSLIDLYFKCGNIGSAENVFQNMP 370



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 55/224 (24%), Positives = 114/224 (50%), Gaps = 7/224 (3%)

Query: 271 SMIDGYLSVGQVSNAYYLFHNMPDR-DAVAWTAMISGLVQNELFVEATYLFMEMRAHG-V 328
           S+I+ Y S     +A  +F  + +  D   W  +++   +N +F+E   +F  +     +
Sbjct: 43  SLINLYFSCHLFQSAKLVFQTIENPLDITLWNGLMAACTKNFIFIEGLEVFHRLLHFPYL 102

Query: 329 PPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYN 388
            P   T+  +  A      +  G+ +H  ++K+    D+++ +  + MYAKC V ++A  
Sbjct: 103 KPDAFTYPSVLKACSGLGRVGYGKMVHTHVIKSGFAMDVVVMSSAVGMYAKCNVFEDAIK 162

Query: 389 IFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGL 448
           +F  M  RD+ SWN+++  +   G   + L++FE M  SG  P+SVT   ++S+C+    
Sbjct: 163 LFDEMPERDVASWNNVISCYYQDGQPEKALELFEEMKVSGFKPDSVTLTTVISSCARLLD 222

Query: 449 VSRGWELFNAMFDVYKIQPGPEHYVS--MINLLGRAGKIKEAEE 490
           + RG E+     ++ +     + +VS  ++++ G+ G ++ A+E
Sbjct: 223 LERGKEIH---MELVRSGFALDGFVSSALVDMYGKCGCLEMAKE 263



 Score = 90.5 bits (223), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 73/283 (25%), Positives = 134/283 (47%), Gaps = 46/283 (16%)

Query: 4   RNHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARR 63
           RN  ++ +   +S I  Y K G I  A+ +FQ MP+ NVVS+N M+SG+++ G   EA  
Sbjct: 336 RNRVEADIFVNSSLIDLYFKCGNIGSAENVFQNMPKTNVVSWNVMISGYVKVGSYLEALV 395

Query: 64  LFEEMPERNV----VSWTAMICGLADAGRVCEARK----LFEEMPERNVVSWNSMVVGLI 115
           +F +M +  V    +++T+++   +    + + ++    + E   E N V   +++    
Sbjct: 396 IFTDMRKAGVKPDAITFTSVLPACSQLAVLEKGKEIHNFIIESKLEINEVVMGALLDMYA 455

Query: 116 RNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNV----VTWTS 171
           + G ++EA  +FN +P ++ +SW +MIA Y       EA+ LFE+M++ +     VT+ +
Sbjct: 456 KCGAVDEALHIFNQLPERDFVSWTSMIAAYGSHGQAFEALKLFEKMQQSDAKPDKVTFLA 515

Query: 172 MISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGN 231
           ++S    AG V+EG   F +M                                 I + G 
Sbjct: 516 ILSACSHAGLVDEGCYYFNQM---------------------------------IAEYGF 542

Query: 232 NCNVQSCNSMINGYIRFGRLEEAQNLFDTVP-VRDEISWTSMI 273
              V+  + +I+   R GRL EA  +    P +R+++   S +
Sbjct: 543 KPAVEHYSCLIDLLGRVGRLREAYEILQRTPDIREDVGLLSTL 585


>gi|449435966|ref|XP_004135765.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 666

 Score =  296 bits (759), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 166/483 (34%), Positives = 261/483 (54%), Gaps = 16/483 (3%)

Query: 123 ARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEM---EERNVVTWTSMISGYCRA 179
           A KVF+S+P  NV  WN +I G +E   + +AI  +  M      N  T+ ++      A
Sbjct: 86  ALKVFSSIPNPNVFIWNIVIKGCLENNKLFKAIYFYGRMVIDARPNKFTYPTLFKACSVA 145

Query: 180 GEVEEGYCLFRRMPRKNVVS----WTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNV 235
             V+EG  +   + +  + S     +A I  +A  G  +++  +F             +V
Sbjct: 146 QAVQEGRQIHGHVVKHGIGSDVHIKSAGIHMYASFGRLEDARKMFYS--------GESDV 197

Query: 236 QSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDR 295
              N+MI+GY++ G LE A+ LF  +PV++  SW  MI+G    G + +A  LF  M +R
Sbjct: 198 VCWNTMIDGYLKCGVLEAAKGLFAQMPVKNIGSWNVMINGLAKGGNLGDARKLFDEMSER 257

Query: 296 DAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIH 355
           D ++W++M+ G +    + EA  +F +M+     P     S +  A      ID GR +H
Sbjct: 258 DEISWSSMVDGYISAGRYKEALEIFQQMQREETRPGRFILSSVLAACSNIGAIDQGRWVH 317

Query: 356 CVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLAN 415
             L +   + D +L   L+ MYAKCG +D  + +F  M  R++ +WN+M+ G + HG A 
Sbjct: 318 AYLKRNSIKLDAVLGTALLDMYAKCGRLDMGWEVFEEMKEREIFTWNAMIGGLAIHGRAE 377

Query: 416 ETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSM 475
           + L++F  + E    PN +T +G+L+AC+HAG V +G  +F  M + Y + P  EHY  M
Sbjct: 378 DALELFSKLQEGRMKPNGITLVGVLTACAHAGFVDKGLRIFQTMREFYGVDPELEHYGCM 437

Query: 476 INLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLN 535
           ++LLGR+G   EAE+ +  +P +P+  +WGALLGAC    GN ++AE   K LLEL+P N
Sbjct: 438 VDLLGRSGLFSEAEDLINSMPMKPNAAVWGALLGACRI-HGNFDLAERVGKILLELEPQN 496

Query: 536 APAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQV 595
           +  +V+L NIYA  GR  +  K+R  M  +G++ VPG S +  NG +  F  GD    Q+
Sbjct: 497 SGRYVLLSNIYAKVGRFDDVSKIRKLMKDRGIKTVPGVSIVDLNGTVHEFKMGDGSHPQM 556

Query: 596 AEI 598
            EI
Sbjct: 557 KEI 559



 Score =  142 bits (358), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 119/433 (27%), Positives = 200/433 (46%), Gaps = 56/433 (12%)

Query: 12  VHLTSS-ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPE 70
           VH+ S+ I  Y+  G +++A+ +F    + +VV +N M+ G+L+ G L  A+ LF +MP 
Sbjct: 167 VHIKSAGIHMYASFGRLEDARKMF-YSGESDVVCWNTMIDGYLKCGVLEAAKGLFAQMPV 225

Query: 71  RNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSM 130
           +N+ SW  MI GLA  G + +ARKLF+EM ER+ +SW+SMV G I  G   EA ++F  M
Sbjct: 226 KNIGSWNVMINGLAKGGNLGDARKLFDEMSERDEISWSSMVDGYISAGRYKEALEIFQQM 285

Query: 131 PIKNVISWNAMIAGYVECCMMGEAI--------VLFEEMEERNVVTWTSMISGYCRAGEV 182
             +       +++  +  C    AI         L     + + V  T+++  Y + G +
Sbjct: 286 QREETRPGRFILSSVLAACSNIGAIDQGRWVHAYLKRNSIKLDAVLGTALLDMYAKCGRL 345

Query: 183 EEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMI 242
           + G+ +F  M  + + +W AMIGG A +G  +++L LF +++                  
Sbjct: 346 DMGWEVFEEMKEREIFTWNAMIGGLAIHGRAEDALELFSKLQE----------------- 388

Query: 243 NGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTA 302
                 GR++   N    V V    +    +D  L + Q    +Y      D +   +  
Sbjct: 389 ------GRMKP--NGITLVGVLTACAHAGFVDKGLRIFQTMREFYGV----DPELEHYGC 436

Query: 303 MISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTE 362
           M+  L ++ LF EA  L   M    + P  A +  L GA     N DL  ++  +L++ E
Sbjct: 437 MVDLLGRSGLFSEAEDLINSM---PMKPNAAVWGALLGACRIHGNFDLAERVGKILLELE 493

Query: 363 SESD---LILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLK 419
            ++    ++L N    +YAK G  D+   I   M  R + +    V G S   + +    
Sbjct: 494 PQNSGRYVLLSN----IYAKVGRFDDVSKIRKLMKDRGIKT----VPGVS---IVDLNGT 542

Query: 420 VFESMLESGTHPN 432
           V E  +  G+HP 
Sbjct: 543 VHEFKMGDGSHPQ 555



 Score =  125 bits (313), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 82/272 (30%), Positives = 145/272 (53%), Gaps = 20/272 (7%)

Query: 8   KSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEE 67
           +S VV   + I  Y K G ++ AK LF  MP +N+ S+N M++G  + G L +AR+LF+E
Sbjct: 194 ESDVVCWNTMIDGYLKCGVLEAAKGLFAQMPVKNIGSWNVMINGLAKGGNLGDARKLFDE 253

Query: 68  MPERNVVSWTAMICGLADAGRVCEARKLFEEM------PERNVVSWNSMVVGLIRNGELN 121
           M ER+ +SW++M+ G   AGR  EA ++F++M      P R ++S  S++      G ++
Sbjct: 254 MSERDEISWSSMVDGYISAGRYKEALEIFQQMQREETRPGRFILS--SVLAACSNIGAID 311

Query: 122 EARKVF-----NSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGY 176
           + R V      NS+ +  V+   A++  Y +C  +     +FEEM+ER + TW +MI G 
Sbjct: 312 QGRWVHAYLKRNSIKLDAVLG-TALLDMYAKCGRLDMGWEVFEEMKEREIFTWNAMIGGL 370

Query: 177 CRAGEVEEGYCLFRRMP----RKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNN 232
              G  E+   LF ++     + N ++   ++   A  GF  + L +F  M+     G +
Sbjct: 371 AIHGRAEDALELFSKLQEGRMKPNGITLVGVLTACAHAGFVDKGLRIFQTMREFY--GVD 428

Query: 233 CNVQSCNSMINGYIRFGRLEEAQNLFDTVPVR 264
             ++    M++   R G   EA++L +++P++
Sbjct: 429 PELEHYGCMVDLLGRSGLFSEAEDLINSMPMK 460



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 97/413 (23%), Positives = 170/413 (41%), Gaps = 85/413 (20%)

Query: 92  ARKLFEEMPERNVVSWNSMVVGLIRNGELNEA-----RKVFNSMP-------------IK 133
           A K+F  +P  NV  WN ++ G + N +L +A     R V ++ P             + 
Sbjct: 86  ALKVFSSIPNPNVFIWNIVIKGCLENNKLFKAIYFYGRMVIDARPNKFTYPTLFKACSVA 145

Query: 134 NVISWNAMIAGYVECCMMGEAIVL----------FEEME---------ERNVVTWTSMIS 174
             +     I G+V    +G  + +          F  +E         E +VV W +MI 
Sbjct: 146 QAVQEGRQIHGHVVKHGIGSDVHIKSAGIHMYASFGRLEDARKMFYSGESDVVCWNTMID 205

Query: 175 GYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCN 234
           GY + G +E    LF +MP KN+ SW  MI G A  G   ++  LF EM       +  +
Sbjct: 206 GYLKCGVLEAAKGLFAQMPVKNIGSWNVMINGLAKGGNLGDARKLFDEM-------SERD 258

Query: 235 VQSCNSMINGYIRFGRLEEAQNLF------DTVPVR----------------DEISW--- 269
             S +SM++GYI  GR +EA  +F      +T P R                D+  W   
Sbjct: 259 EISWSSMVDGYISAGRYKEALEIFQQMQREETRPGRFILSSVLAACSNIGAIDQGRWVHA 318

Query: 270 --------------TSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVE 315
                         T+++D Y   G++   + +F  M +R+   W AMI GL  +    +
Sbjct: 319 YLKRNSIKLDAVLGTALLDMYAKCGRLDMGWEVFEEMKEREIFTWNAMIGGLAIHGRAED 378

Query: 316 ATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTES-ESDLILENCLI 374
           A  LF +++   + P   T   +  A      +D G +I   + +    + +L    C++
Sbjct: 379 ALELFSKLQEGRMKPNGITLVGVLTACAHAGFVDKGLRIFQTMREFYGVDPELEHYGCMV 438

Query: 375 SMYAKCGVIDNAYNIFSNM-VSRDLVSWNSMVMGFSHHGLANETLKVFESMLE 426
            +  + G+   A ++ ++M +  +   W +++     HG  +   +V + +LE
Sbjct: 439 DLLGRSGLFSEAEDLINSMPMKPNAAVWGALLGACRIHGNFDLAERVGKILLE 491



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 55/197 (27%), Positives = 95/197 (48%), Gaps = 17/197 (8%)

Query: 3   ERNHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEAR 62
           +RN  K   V  T+ +  Y+K G +D    +F+ M +R + ++NAM+ G   +GR  +A 
Sbjct: 321 KRNSIKLDAVLGTALLDMYAKCGRLDMGWEVFEEMKEREIFTWNAMIGGLAIHGRAEDAL 380

Query: 63  RLFEEMPE----RNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVS-----WNSMVVG 113
            LF ++ E     N ++   ++   A AG V +  ++F+ M E   V      +  MV  
Sbjct: 381 ELFSKLQEGRMKPNGITLVGVLTACAHAGFVDKGLRIFQTMREFYGVDPELEHYGCMVDL 440

Query: 114 LIRNGELNEARKVFNSMPIK-NVISWNAM-----IAGYVECCMMGEAIVLFEEMEERNVV 167
           L R+G  +EA  + NSMP+K N   W A+     I G  +       I+L  E+E +N  
Sbjct: 441 LGRSGLFSEAEDLINSMPMKPNAAVWGALLGACRIHGNFDLAERVGKILL--ELEPQNSG 498

Query: 168 TWTSMISGYCRAGEVEE 184
            +  + + Y + G  ++
Sbjct: 499 RYVLLSNIYAKVGRFDD 515


>gi|357477865|ref|XP_003609218.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355510273|gb|AES91415.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1134

 Score =  296 bits (759), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 184/636 (28%), Positives = 318/636 (50%), Gaps = 55/636 (8%)

Query: 18   ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWT 77
            +  +++ G +D AK +F+ M  RN V+ N ++ G  +  +  EA ++F+EM +   ++  
Sbjct: 393  VNGFARYGLMDCAKMIFKQMYDRNAVTMNGLMVGLARQHQGEEAAKVFKEMKDLVEINSE 452

Query: 78   AMIC----------------------------GLADA------------GR---VCEARK 94
            +++                             GL DA            G+   +  A  
Sbjct: 453  SLVVLLSTFTEFSNLKEGKRKGQEVHAYLFRSGLVDARISIGNALVNMYGKCTAIDNACS 512

Query: 95   LFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEA 154
            +F+ MP ++ VSWNSM+ GL  N    EA   F++M    ++  N  +   +  C     
Sbjct: 513  VFQLMPSKDTVSWNSMISGLDHNERFEEAVSCFHTMKRNGMVPSNFSVISTLSSCSSLGW 572

Query: 155  IVLFEEME--------ERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGG 206
            + L  ++         + +V    ++++ Y     + E   +F +MP  + VSW + IG 
Sbjct: 573  LTLGRQIHGEGFKWGLDLDVSVSNALLTLYAETDSINECQKVFFQMPEYDQVSWNSFIGA 632

Query: 207  FA-WNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRD 265
             A +     ++L  F+EM       N     +  + ++ +   G   +   L     V D
Sbjct: 633  LAKYEASVLQALKYFLEMMQAGWRPNRVTFINILAAVSSFSVLGLGHQIHALILKYSVAD 692

Query: 266  EISW-TSMIDGYLSVGQVSNAYYLFHNMPDR-DAVAWTAMISGLVQNELFVEATYLFMEM 323
            + +   +++  Y    Q+ +   +F  M +R D V+W +MISG + + +  +A  L   M
Sbjct: 693  DNAIENALLAFYGKCEQMEDCEIIFSRMSERRDEVSWNSMISGYLHSGILHKAMDLVWPM 752

Query: 324  RAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVI 383
               G      TF+ +  A  + A ++ G ++H   ++   ESD+++ + L+ MYAKCG I
Sbjct: 753  MQRGQKLDGFTFATVLSACASVATLERGMEVHACAVRACLESDVVVGSALVDMYAKCGKI 812

Query: 384  DNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSAC 443
            D A   F  M  R++ SWNSM+ G++ HG   + LK+F  M + G  P+ VTF+G+LSAC
Sbjct: 813  DYASRFFELMPVRNIYSWNSMISGYARHGHGQKALKIFTRMKQHGQSPDHVTFVGVLSAC 872

Query: 444  SHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRI 503
            SH GLV  G++ F +M +VY + P  EH+  M++LLGRAG +K+ E+F+  +P +P+  I
Sbjct: 873  SHVGLVDEGYKHFKSMGEVYGLSPRIEHFSCMVDLLGRAGDVKKIEDFIKTMPMDPNILI 932

Query: 504  WGALLGACGFCEG-NAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDM 562
            W  +LGAC    G N E+ + AAK L+EL+P NA  +V+L N++AA G   +  + R+ M
Sbjct: 933  WRTVLGACCRANGRNTELGQRAAKMLIELEPQNAVNYVLLSNMHAAGGNWEDVVEARLAM 992

Query: 563  GLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
                V+K  GCSW+    G+ +F++GD+   +  +I
Sbjct: 993  RKAAVKKDAGCSWVNMKDGVHLFVAGDQTHPEKEKI 1028



 Score =  158 bits (400), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 142/563 (25%), Positives = 251/563 (44%), Gaps = 83/563 (14%)

Query: 11  VVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPE 70
           +V L   +T+  K GF+            R++   +A+++GF + G +  A+ +F++M +
Sbjct: 367 LVLLEQMLTRIEKSGFL------------RDLYVGSALVNGFARYGLMDCAKMIFKQMYD 414

Query: 71  RNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGE---LNEARK-- 125
           RN V+   ++ GLA   +  EA K+F+EM +   ++  S+VV L    E   L E ++  
Sbjct: 415 RNAVTMNGLMVGLARQHQGEEAAKVFKEMKDLVEINSESLVVLLSTFTEFSNLKEGKRKG 474

Query: 126 ------VFNSMPIKNVISW-NAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCR 178
                 +F S  +   IS  NA++  Y +C  +  A  +F+ M  ++ V+W SMISG   
Sbjct: 475 QEVHAYLFRSGLVDARISIGNALVNMYGKCTAIDNACSVFQLMPSKDTVSWNSMISGLDH 534

Query: 179 AGEVEEGYCLFRRMPRK-------NVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGN 231
               EE    F  M R        +V+S  +      W    ++     I  +G    G 
Sbjct: 535 NERFEEAVSCFHTMKRNGMVPSNFSVISTLSSCSSLGWLTLGRQ-----IHGEGF-KWGL 588

Query: 232 NCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHN 291
           + +V   N+++  Y     + E Q +F  +P  D++SW S I G L+  + S        
Sbjct: 589 DLDVSVSNALLTLYAETDSINECQKVFFQMPEYDQVSWNSFI-GALAKYEAS-------- 639

Query: 292 MPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLG 351
                                 ++A   F+EM   G  P   TF  +  A  + + + LG
Sbjct: 640 ---------------------VLQALKYFLEMMQAGWRPNRVTFINILAAVSSFSVLGLG 678

Query: 352 RQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVS-RDLVSWNSMVMGFSH 410
            QIH +++K     D  +EN L++ Y KC  +++   IFS M   RD VSWNSM+ G+ H
Sbjct: 679 HQIHALILKYSVADDNAIENALLAFYGKCEQMEDCEIIFSRMSERRDEVSWNSMISGYLH 738

Query: 411 HGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPE 470
            G+ ++ + +   M++ G   +  TF  +LSAC+    + RG E+         ++   E
Sbjct: 739 SGILHKAMDLVWPMMQRGQKLDGFTFATVLSACASVATLERGMEVHAC-----AVRACLE 793

Query: 471 HYV----SMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFC-EGNAEIAEHAA 525
             V    +++++  + GKI  A  F   +P    +  W +++   G+   G+ + A    
Sbjct: 794 SDVVVGSALVDMYAKCGKIDYASRFFELMPVRNIYS-WNSMIS--GYARHGHGQKALKIF 850

Query: 526 KRLLELDPLNAPAHVVLCNIYAA 548
            R+ +     +P HV    + +A
Sbjct: 851 TRMKQHG--QSPDHVTFVGVLSA 871



 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 141/562 (25%), Positives = 256/562 (45%), Gaps = 53/562 (9%)

Query: 9   SLVVHLTSSITKYSKRGFIDEAK----ALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRL 64
           S +  L S   +Y     + +A      L++     +V   N +++ +++ G L  AR+L
Sbjct: 138 SQLQQLDSEFDRYKTSSSLYDANHLHLQLYKTGFTDDVFFCNTLINIYVRIGNLVSARKL 197

Query: 65  FEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEAR 124
           F+EMP++N+VSW+ +I G        EA  LF+ +    ++  +  V   +R  +   + 
Sbjct: 198 FDEMPQKNLVSWSCLISGYTQNRMPDEACSLFKGVISSGLLPNHFAVGSALRACQQCGST 257

Query: 125 KVFNSMPI----------KNVISWNAMIAGYVECC-MMGEAIVLFEEMEERNVVTWTSMI 173
            +   M I           ++I  N +++ Y +C   + +A  +F+E++ RN VTW S+I
Sbjct: 258 GIKLGMQIHAFICKLPCVSDMILSNVLMSMYSDCSGSIDDAHRVFDEIKFRNSVTWNSII 317

Query: 174 SGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNC 233
           S YCR G+    + LF  M  +          G   N    E  L  +           C
Sbjct: 318 SVYCRRGDAVSAFKLFSVMQME----------GVELNLRPNEYTLCSLVTAA-------C 360

Query: 234 NVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMP 293
           ++  C  ++   +   R+E++  L      RD    +++++G+   G +  A  +F  M 
Sbjct: 361 SLADCGLVLLEQM-LTRIEKSGFL------RDLYVGSALVNGFARYGLMDCAKMIFKQMY 413

Query: 294 DRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNA-TFSVLFGAAGATANIDLGR 352
           DR+AV    ++ GL +     EA  +F EM+   +  +N+ +  VL       +N+  G+
Sbjct: 414 DRNAVTMNGLMVGLARQHQGEEAAKVFKEMK--DLVEINSESLVVLLSTFTEFSNLKEGK 471

Query: 353 ----QIHCVLMKTE-SESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMG 407
               ++H  L ++   ++ + + N L++MY KC  IDNA ++F  M S+D VSWNSM+ G
Sbjct: 472 RKGQEVHAYLFRSGLVDARISIGNALVNMYGKCTAIDNACSVFQLMPSKDTVSWNSMISG 531

Query: 408 FSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQP 467
             H+    E +  F +M  +G  P++ + +  LS+CS  G ++ G ++    F  + +  
Sbjct: 532 LDHNERFEEAVSCFHTMKRNGMVPSNFSVISTLSSCSSLGWLTLGRQIHGEGFK-WGLDL 590

Query: 468 GPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKR 527
                 +++ L      I E ++   ++P E D   W + +GA    E +      A K 
Sbjct: 591 DVSVSNALLTLYAETDSINECQKVFFQMP-EYDQVSWNSFIGALAKYEAS---VLQALKY 646

Query: 528 LLELDPLN-APAHVVLCNIYAA 548
            LE+      P  V   NI AA
Sbjct: 647 FLEMMQAGWRPNRVTFINILAA 668



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 73/233 (31%), Positives = 117/233 (50%), Gaps = 14/233 (6%)

Query: 231 NNCNVQSCNSMINGYIRFGRLEEAQNL----FDTVPVRDEISWTSMIDGYLSVGQVSNAY 286
           ++  +Q  +S  + Y     L +A +L    + T    D     ++I+ Y+ +G + +A 
Sbjct: 136 SHSQLQQLDSEFDRYKTSSSLYDANHLHLQLYKTGFTDDVFFCNTLINIYVRIGNLVSAR 195

Query: 287 YLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAG--A 344
            LF  MP ++ V+W+ +ISG  QN +  EA  LF  + + G+ P +        A     
Sbjct: 196 KLFDEMPQKNLVSWSCLISGYTQNRMPDEACSLFKGVISSGLLPNHFAVGSALRACQQCG 255

Query: 345 TANIDLGRQIHCVLMKTESESDLILENCLISMYAKC-GVIDNAYNIFSNMVSRDLVSWNS 403
           +  I LG QIH  + K    SD+IL N L+SMY+ C G ID+A+ +F  +  R+ V+WNS
Sbjct: 256 STGIKLGMQIHAFICKLPCVSDMILSNVLMSMYSDCSGSIDDAHRVFDEIKFRNSVTWNS 315

Query: 404 MVMGFSHHGLANETLKVFESM----LESGTHPNSVTFLGILS-ACSHA--GLV 449
           ++  +   G A    K+F  M    +E    PN  T   +++ ACS A  GLV
Sbjct: 316 IISVYCRRGDAVSAFKLFSVMQMEGVELNLRPNEYTLCSLVTAACSLADCGLV 368



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 59/222 (26%), Positives = 106/222 (47%), Gaps = 26/222 (11%)

Query: 8    KSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEE 67
            +S VV  ++ +  Y+K G ID A   F+LMP RN+ S+N+M+SG+ ++G   +A ++F  
Sbjct: 793  ESDVVVGSALVDMYAKCGKIDYASRFFELMPVRNIYSWNSMISGYARHGHGQKALKIFTR 852

Query: 68   MPER----NVVSWTAMICGLADAGRVCEARKLFEEMPERNVVS-----WNSMVVGLIRNG 118
            M +     + V++  ++   +  G V E  K F+ M E   +S     ++ MV  L R G
Sbjct: 853  MKQHGQSPDHVTFVGVLSACSHVGLVDEGYKHFKSMGEVYGLSPRIEHFSCMVDLLGRAG 912

Query: 119  ELNEARKVFNSMPIK-NVISWNAMIAGYVECCM-------MGE-AIVLFEEMEERNVVTW 169
            ++ +      +MP+  N++ W  ++     CC        +G+ A  +  E+E +N V +
Sbjct: 913  DVKKIEDFIKTMPMDPNILIWRTVLGA---CCRANGRNTELGQRAAKMLIELEPQNAVNY 969

Query: 170  TSMISGYCRAG---EVEEGYCLFRRMPRKNVV--SWTAMIGG 206
              + + +   G   +V E     R+   K     SW  M  G
Sbjct: 970  VLLSNMHAAGGNWEDVVEARLAMRKAAVKKDAGCSWVNMKDG 1011


>gi|302760463|ref|XP_002963654.1| hypothetical protein SELMODRAFT_79648 [Selaginella moellendorffii]
 gi|300168922|gb|EFJ35525.1| hypothetical protein SELMODRAFT_79648 [Selaginella moellendorffii]
          Length = 580

 Score =  296 bits (759), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 160/505 (31%), Positives = 275/505 (54%), Gaps = 10/505 (1%)

Query: 30  AKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRV 89
           A+  F+ MP+RN  ++N ++    +NG L EAR +F+++PE++ V+W  MI   A    V
Sbjct: 49  ARLAFERMPERNPYTWNFLIVASSRNGHLEEARMVFDKLPEKSAVTWNTMISCYAQKQCV 108

Query: 90  CEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVIS--WNAMIAGYVE 147
            EA+ LF+ +P ++V S N ++    ++G L EA+++F+S+P + + S  WN ++  Y +
Sbjct: 109 SEAKCLFDSLPVKDVFSRNILLTAYAQSGNLAEAKEMFDSIPSEELTSICWNNILTAYSQ 168

Query: 148 CCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGF 207
              + EA  +F+ M ER V +W +MI+ Y   G++++   ++  +  KN ++ T+M+  +
Sbjct: 169 NRQLPEAKSVFDRMTERTVESWNAMITAYVGNGDLDDAKLVYDMITEKNSIAGTSMVNAY 228

Query: 208 AWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEI 267
           A  G  +++ L+F EM        + +V S  +M+  Y+  G +  A+NLF  +P RD +
Sbjct: 229 AQEGRTRQAKLVFDEMV-------DHDVVSWTTMLAAYLNNGHITSAENLFALMPARDYL 281

Query: 268 SWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHG 327
           +W++M+  Y   G +  A  L   MP +DA +WTA+ISG  +     +A   F  M   G
Sbjct: 282 AWSTMVLAYAIKGNIELATKLHEEMPVKDATSWTALISGHARAGHSKQALAYFKLMDLEG 341

Query: 328 VPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAY 387
           + P   T      A  ++  +  G+ I         + D  +   L+SM+ KCG +D A 
Sbjct: 342 IEPDRITLMSALEACASSTALAEGKTIFEGAAARGLDRDTFVGTALVSMFGKCGRLDQAR 401

Query: 388 NIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAG 447
            +F+N+   ++VSW ++++ ++  G  +   ++F  M   G  PN +TF  +L+ACSH G
Sbjct: 402 ALFNNLPLPNVVSWTNIIVAYAQSGERSLAAEMFNRMDLQGEQPNWLTFSTVLAACSHGG 461

Query: 448 LVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGAL 507
           L+      F  M     I P  EHY  +++LLGR+G++   E+    +PFE D   W A+
Sbjct: 462 LLEDARCYFLRMIGDNSIDPVVEHYRCLVDLLGRSGQLDRMEDLANEMPFEGDEVSWTAV 521

Query: 508 LGACGFCEGNAEIAEHAAKRLLELD 532
           LGAC    G+ E     AK+LLE+D
Sbjct: 522 LGACSL-HGDTERGGRIAKQLLEMD 545



 Score =  175 bits (443), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 118/462 (25%), Positives = 222/462 (48%), Gaps = 48/462 (10%)

Query: 7   PKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFE 66
           P+   V   + I+ Y+++  + EAK LF  +P ++V S N +L+ + Q+G L+EA+ +F+
Sbjct: 88  PEKSAVTWNTMISCYAQKQCVSEAKCLFDSLPVKDVFSRNILLTAYAQSGNLAEAKEMFD 147

Query: 67  EMPERNVVS--WTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEAR 124
            +P   + S  W  ++   +   ++ EA+ +F+ M ER V SWN+M+   + NG+L++A+
Sbjct: 148 SIPSEELTSICWNNILTAYSQNRQLPEAKSVFDRMTERTVESWNAMITAYVGNGDLDDAK 207

Query: 125 KVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEE 184
            V++ +  KN I+  +M+  Y +     +A ++F+EM + +VV+WT+M++ Y   G +  
Sbjct: 208 LVYDMITEKNSIAGTSMVNAYAQEGRTRQAKLVFDEMVDHDVVSWTTMLAAYLNNGHITS 267

Query: 185 GYCLF-------------------------------RRMPRKNVVSWTAMIGGFAWNGFH 213
              LF                                 MP K+  SWTA+I G A  G  
Sbjct: 268 AENLFALMPARDYLAWSTMVLAYAIKGNIELATKLHEEMPVKDATSWTALISGHARAGHS 327

Query: 214 KESLLLF--IEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPV----RDEI 267
           K++L  F  ++++GI       +  +  S +        L E + +F+        RD  
Sbjct: 328 KQALAYFKLMDLEGI-----EPDRITLMSALEACASSTALAEGKTIFEGAAARGLDRDTF 382

Query: 268 SWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHG 327
             T+++  +   G++  A  LF+N+P  + V+WT +I    Q+     A  +F  M   G
Sbjct: 383 VGTALVSMFGKCGRLDQARALFNNLPLPNVVSWTNIIVAYAQSGERSLAAEMFNRMDLQG 442

Query: 328 VPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILEN--CLISMYAKCGVIDN 385
             P   TFS +  A      ++  R  + + M  ++  D ++E+  CL+ +  + G +D 
Sbjct: 443 EQPNWLTFSTVLAACSHGGLLEDAR-CYFLRMIGDNSIDPVVEHYRCLVDLLGRSGQLDR 501

Query: 386 AYNIFSNM-VSRDLVSWNSMVMGFSHHGLANETLKVFESMLE 426
             ++ + M    D VSW +++   S HG      ++ + +LE
Sbjct: 502 MEDLANEMPFEGDEVSWTAVLGACSLHGDTERGGRIAKQLLE 543



 Score =  145 bits (365), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 102/431 (23%), Positives = 193/431 (44%), Gaps = 37/431 (8%)

Query: 107 WNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGY-VECCMMGEAIVLFEEMEERN 165
           WN+++    +N +L EA+ VF+ M  +   SWNAMI  Y +       A + FE M ERN
Sbjct: 1   WNNILTAYSQNLQLPEAKSVFDRMTERTFESWNAMITAYFIPNSSASLARLAFERMPERN 60

Query: 166 VVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLF----- 220
             TW  +I    R G +EE   +F ++P K+ V+W  MI  +A      E+  LF     
Sbjct: 61  PYTWNFLIVASSRNGHLEEARMVFDKLPEKSAVTWNTMISCYAQKQCVSEAKCLFDSLPV 120

Query: 221 -------IEMKGICDNGNNCNVQSC--------------NSMINGYIRFGRLEEAQNLFD 259
                  I +     +GN    +                N+++  Y +  +L EA+++FD
Sbjct: 121 KDVFSRNILLTAYAQSGNLAEAKEMFDSIPSEELTSICWNNILTAYSQNRQLPEAKSVFD 180

Query: 260 TVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYL 319
            +  R   SW +MI  Y+  G + +A  ++  + +++++A T+M++   Q     +A  +
Sbjct: 181 RMTERTVESWNAMITAYVGNGDLDDAKLVYDMITEKNSIAGTSMVNAYAQEGRTRQAKLV 240

Query: 320 FMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAK 379
           F EM  H V     +++ +  A     +I     +  ++       D +  + ++  YA 
Sbjct: 241 FDEMVDHDV----VSWTTMLAAYLNNGHITSAENLFALM----PARDYLAWSTMVLAYAI 292

Query: 380 CGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGI 439
            G I+ A  +   M  +D  SW +++ G +  G + + L  F+ M   G  P+ +T +  
Sbjct: 293 KGNIELATKLHEEMPVKDATSWTALISGHARAGHSKQALAYFKLMDLEGIEPDRITLMSA 352

Query: 440 LSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEP 499
           L AC+ +  ++ G  +F        +        +++++ G+ G++ +A      LP  P
Sbjct: 353 LEACASSTALAEGKTIFEGAA-ARGLDRDTFVGTALVSMFGKCGRLDQARALFNNLPL-P 410

Query: 500 DHRIWGALLGA 510
           +   W  ++ A
Sbjct: 411 NVVSWTNIIVA 421


>gi|357510067|ref|XP_003625322.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355500337|gb|AES81540.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 1024

 Score =  296 bits (759), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 191/583 (32%), Positives = 296/583 (50%), Gaps = 39/583 (6%)

Query: 38  PQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFE 97
           P   V+++ A+      +G L  A  +F  + + N   W  MI G  +A +   A   F 
Sbjct: 191 PVSRVIAFCALA----HSGDLHYAHTIFNRVEQPNTFMWNTMIRGYQNARKPIFAFSFFV 246

Query: 98  EMPERNV-VSWNSMVVGLIRNGELNEARKVFNSMPIKNVISW-----------NAMIAGY 145
            M +  V +   S V  L       +   VF    +  V+ W           N +I  Y
Sbjct: 247 YMFQLRVEMDSRSFVFAL---KACQQFETVFEGESVYCVV-WKMGFDCELLVRNGLIHFY 302

Query: 146 VECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRM----PRKNVVSWT 201
            E  ++  A  +F+E  +++VVTWT+MI GY      EE   +F  M       N V+  
Sbjct: 303 AERGLLKNARQVFDESSDKDVVTWTTMIDGYAAHDCSEEAMEVFELMLLSHVEPNEVTLI 362

Query: 202 AMIGGFAWNGFHKESLLLFIEM-----KGICDNGNNCNVQSCNSMINGYIRFGRLEEAQN 256
           A++   +  G         +EM     + + +    C++   N++++ Y++   L +A+ 
Sbjct: 363 AVVSACSDMGN--------LEMGKRVHEKVEEKNMRCSLSLHNALLDMYVKCDCLVDARE 414

Query: 257 LFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEA 316
           LFD +  +D  SWTSM++GY   G + +A   F   P ++AV W+AMI+G  QN    E+
Sbjct: 415 LFDRMATKDVYSWTSMVNGYAKCGDLESARRFFDQTPRKNAVCWSAMIAGYSQNNKPKES 474

Query: 317 TYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTES-ESDLILENCLIS 375
             LF EM   GV P+  T   +  A G    ++LG  IH   +  +     + LEN ++ 
Sbjct: 475 LKLFHEMMERGVVPIEHTLVSVLSACGQLTCLNLGDWIHQYFVVGKIIPLSVTLENAIVD 534

Query: 376 MYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVT 435
           MYAKCG ID A  +FS M  R+L+SWN+M+ G++ +G A + + VF+ M   G  PN++T
Sbjct: 535 MYAKCGSIDAATEVFSTMPERNLISWNTMIAGYAANGRAKQAINVFDQMRNMGFEPNNIT 594

Query: 436 FLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRL 495
           F+ +L+ACSH GL+S G E F+ M   Y I+P   HY  M++LLGR G ++EA + +  +
Sbjct: 595 FVSLLTACSHGGLISEGREYFDNMERKYGIKPERGHYACMVDLLGRTGLLEEAYKLIANM 654

Query: 496 PFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEE 555
           P +P    WGALL AC    GN E+A  +A  LL LDP ++  +V+L N  A   +  + 
Sbjct: 655 PMQPCEAAWGALLNACRM-HGNVELARLSAHNLLRLDPEDSGIYVLLANTCANDRKWSDV 713

Query: 556 HKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
            ++R  M  KGV+K+PG S +  +GG   FL  D+   Q  EI
Sbjct: 714 RRVRSLMKDKGVKKIPGYSLIEIDGGFVEFLVADESHPQSEEI 756



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 81/314 (25%), Positives = 157/314 (50%), Gaps = 22/314 (7%)

Query: 12  VHLTSSITKYSKRGFIDEAKALFQLMPQRNVVS----YNAMLSGFLQNGRLSEARRLFEE 67
           V L + ++  S  G ++  K + + + ++N+      +NA+L  +++   L +AR LF+ 
Sbjct: 359 VTLIAVVSACSDMGNLEMGKRVHEKVEEKNMRCSLSLHNALLDMYVKCDCLVDARELFDR 418

Query: 68  MPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVF 127
           M  ++V SWT+M+ G A  G +  AR+ F++ P +N V W++M+ G  +N +  E+ K+F
Sbjct: 419 MATKDVYSWTSMVNGYAKCGDLESARRFFDQTPRKNAVCWSAMIAGYSQNNKPKESLKLF 478

Query: 128 NSM------PIKNVISWNAMIAGYVECCMMGEAI---VLFEEMEERNVVTWTSMISGYCR 178
           + M      PI++ +       G + C  +G+ I    +  ++   +V    +++  Y +
Sbjct: 479 HEMMERGVVPIEHTLVSVLSACGQLTCLNLGDWIHQYFVVGKIIPLSVTLENAIVDMYAK 538

Query: 179 AGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSC 238
            G ++    +F  MP +N++SW  MI G+A NG  K+++ +F +M+ +    NN      
Sbjct: 539 CGSIDAATEVFSTMPERNLISWNTMIAGYAANGRAKQAINVFDQMRNMGFEPNNITFV-- 596

Query: 239 NSMINGYIRFGRLEEAQNLFDTVPVRDEIS-----WTSMIDGYLSVGQVSNAYYLFHNMP 293
            S++      G + E +  FD +  +  I      +  M+D     G +  AY L  NMP
Sbjct: 597 -SLLTACSHGGLISEGREYFDNMERKYGIKPERGHYACMVDLLGRTGLLEEAYKLIANMP 655

Query: 294 DRDA-VAWTAMISG 306
            +    AW A+++ 
Sbjct: 656 MQPCEAAWGALLNA 669


>gi|449526834|ref|XP_004170418.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 666

 Score =  296 bits (759), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 166/483 (34%), Positives = 261/483 (54%), Gaps = 16/483 (3%)

Query: 123 ARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEM---EERNVVTWTSMISGYCRA 179
           A KVF+S+P  NV  WN +I G +E   + +AI  +  M      N  T+ ++      A
Sbjct: 86  ALKVFSSIPNPNVFIWNIVIKGCLENNKLFKAIYFYGRMVIDARPNKFTYPTLFKACSVA 145

Query: 180 GEVEEGYCLFRRMPRKNVVS----WTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNV 235
             V+EG  +   + +  + S     +A I  +A  G  +++  +F             +V
Sbjct: 146 QAVQEGRQIHGHVVKHGIGSDVHIKSAGIQMYASFGRLEDARKMFYS--------GESDV 197

Query: 236 QSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDR 295
              N+MI+GY++ G LE A+ LF  +PV++  SW  MI+G    G + +A  LF  M +R
Sbjct: 198 VCWNTMIDGYLKCGVLEAAKGLFAQMPVKNIGSWNVMINGLAKGGNLGDARKLFDEMSER 257

Query: 296 DAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIH 355
           D ++W++M+ G +    + EA  +F +M+     P     S +  A      ID GR +H
Sbjct: 258 DEISWSSMVDGYISAGRYKEALEIFQQMQREETRPGRFILSSVLAACSNIGAIDQGRWVH 317

Query: 356 CVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLAN 415
             L +   + D +L   L+ MYAKCG +D  + +F  M  R++ +WN+M+ G + HG A 
Sbjct: 318 AYLKRNSIKLDAVLGTALLDMYAKCGRLDMGWEVFEEMKEREIFTWNAMIGGLAIHGRAE 377

Query: 416 ETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSM 475
           + L++F  + E    PN +T +G+L+AC+HAG V +G  +F  M + Y + P  EHY  M
Sbjct: 378 DALELFSKLQEGRMKPNGITLVGVLTACAHAGFVDKGLRIFQTMREFYGVDPELEHYGCM 437

Query: 476 INLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLN 535
           ++LLGR+G   EAE+ +  +P +P+  +WGALLGAC    GN ++AE   K LLEL+P N
Sbjct: 438 VDLLGRSGLFSEAEDLINSMPMKPNAAVWGALLGACRI-HGNFDLAERVGKILLELEPQN 496

Query: 536 APAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQV 595
           +  +V+L NIYA  GR  +  K+R  M  +G++ VPG S +  NG +  F  GD    Q+
Sbjct: 497 SGRYVLLSNIYAKVGRFDDVSKIRKLMKNRGIKTVPGVSIVDLNGTVHEFKMGDGSHPQM 556

Query: 596 AEI 598
            EI
Sbjct: 557 KEI 559



 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 119/433 (27%), Positives = 201/433 (46%), Gaps = 56/433 (12%)

Query: 12  VHLTSS-ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPE 70
           VH+ S+ I  Y+  G +++A+ +F    + +VV +N M+ G+L+ G L  A+ LF +MP 
Sbjct: 167 VHIKSAGIQMYASFGRLEDARKMF-YSGESDVVCWNTMIDGYLKCGVLEAAKGLFAQMPV 225

Query: 71  RNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSM 130
           +N+ SW  MI GLA  G + +ARKLF+EM ER+ +SW+SMV G I  G   EA ++F  M
Sbjct: 226 KNIGSWNVMINGLAKGGNLGDARKLFDEMSERDEISWSSMVDGYISAGRYKEALEIFQQM 285

Query: 131 PIKNVISWNAMIAGYVECCMMGEAI--------VLFEEMEERNVVTWTSMISGYCRAGEV 182
             +       +++  +  C    AI         L     + + V  T+++  Y + G +
Sbjct: 286 QREETRPGRFILSSVLAACSNIGAIDQGRWVHAYLKRNSIKLDAVLGTALLDMYAKCGRL 345

Query: 183 EEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMI 242
           + G+ +F  M  + + +W AMIGG A +G  +++L LF +++                  
Sbjct: 346 DMGWEVFEEMKEREIFTWNAMIGGLAIHGRAEDALELFSKLQE----------------- 388

Query: 243 NGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTA 302
                 GR++   N    V V    +    +D  L + Q    +Y      D +   +  
Sbjct: 389 ------GRMKP--NGITLVGVLTACAHAGFVDKGLRIFQTMREFYGV----DPELEHYGC 436

Query: 303 MISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTE 362
           M+  L ++ LF EA  L   M    + P  A +  L GA     N DL  ++  +L++ E
Sbjct: 437 MVDLLGRSGLFSEAEDLINSM---PMKPNAAVWGALLGACRIHGNFDLAERVGKILLELE 493

Query: 363 SESD---LILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLK 419
            ++    ++L N    +YAK G  D+   I   M +R + +    V G S   + +    
Sbjct: 494 PQNSGRYVLLSN----IYAKVGRFDDVSKIRKLMKNRGIKT----VPGVS---IVDLNGT 542

Query: 420 VFESMLESGTHPN 432
           V E  +  G+HP 
Sbjct: 543 VHEFKMGDGSHPQ 555



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 82/272 (30%), Positives = 145/272 (53%), Gaps = 20/272 (7%)

Query: 8   KSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEE 67
           +S VV   + I  Y K G ++ AK LF  MP +N+ S+N M++G  + G L +AR+LF+E
Sbjct: 194 ESDVVCWNTMIDGYLKCGVLEAAKGLFAQMPVKNIGSWNVMINGLAKGGNLGDARKLFDE 253

Query: 68  MPERNVVSWTAMICGLADAGRVCEARKLFEEM------PERNVVSWNSMVVGLIRNGELN 121
           M ER+ +SW++M+ G   AGR  EA ++F++M      P R ++S  S++      G ++
Sbjct: 254 MSERDEISWSSMVDGYISAGRYKEALEIFQQMQREETRPGRFILS--SVLAACSNIGAID 311

Query: 122 EARKVF-----NSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGY 176
           + R V      NS+ +  V+   A++  Y +C  +     +FEEM+ER + TW +MI G 
Sbjct: 312 QGRWVHAYLKRNSIKLDAVLG-TALLDMYAKCGRLDMGWEVFEEMKEREIFTWNAMIGGL 370

Query: 177 CRAGEVEEGYCLFRRMP----RKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNN 232
              G  E+   LF ++     + N ++   ++   A  GF  + L +F  M+     G +
Sbjct: 371 AIHGRAEDALELFSKLQEGRMKPNGITLVGVLTACAHAGFVDKGLRIFQTMREFY--GVD 428

Query: 233 CNVQSCNSMINGYIRFGRLEEAQNLFDTVPVR 264
             ++    M++   R G   EA++L +++P++
Sbjct: 429 PELEHYGCMVDLLGRSGLFSEAEDLINSMPMK 460



 Score = 99.0 bits (245), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 97/413 (23%), Positives = 170/413 (41%), Gaps = 85/413 (20%)

Query: 92  ARKLFEEMPERNVVSWNSMVVGLIRNGELNEA-----RKVFNSMP-------------IK 133
           A K+F  +P  NV  WN ++ G + N +L +A     R V ++ P             + 
Sbjct: 86  ALKVFSSIPNPNVFIWNIVIKGCLENNKLFKAIYFYGRMVIDARPNKFTYPTLFKACSVA 145

Query: 134 NVISWNAMIAGYVECCMMGEAIVL----------FEEME---------ERNVVTWTSMIS 174
             +     I G+V    +G  + +          F  +E         E +VV W +MI 
Sbjct: 146 QAVQEGRQIHGHVVKHGIGSDVHIKSAGIQMYASFGRLEDARKMFYSGESDVVCWNTMID 205

Query: 175 GYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCN 234
           GY + G +E    LF +MP KN+ SW  MI G A  G   ++  LF EM       +  +
Sbjct: 206 GYLKCGVLEAAKGLFAQMPVKNIGSWNVMINGLAKGGNLGDARKLFDEM-------SERD 258

Query: 235 VQSCNSMINGYIRFGRLEEAQNLF------DTVPVR----------------DEISW--- 269
             S +SM++GYI  GR +EA  +F      +T P R                D+  W   
Sbjct: 259 EISWSSMVDGYISAGRYKEALEIFQQMQREETRPGRFILSSVLAACSNIGAIDQGRWVHA 318

Query: 270 --------------TSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVE 315
                         T+++D Y   G++   + +F  M +R+   W AMI GL  +    +
Sbjct: 319 YLKRNSIKLDAVLGTALLDMYAKCGRLDMGWEVFEEMKEREIFTWNAMIGGLAIHGRAED 378

Query: 316 ATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTES-ESDLILENCLI 374
           A  LF +++   + P   T   +  A      +D G +I   + +    + +L    C++
Sbjct: 379 ALELFSKLQEGRMKPNGITLVGVLTACAHAGFVDKGLRIFQTMREFYGVDPELEHYGCMV 438

Query: 375 SMYAKCGVIDNAYNIFSNM-VSRDLVSWNSMVMGFSHHGLANETLKVFESMLE 426
            +  + G+   A ++ ++M +  +   W +++     HG  +   +V + +LE
Sbjct: 439 DLLGRSGLFSEAEDLINSMPMKPNAAVWGALLGACRIHGNFDLAERVGKILLE 491



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 55/197 (27%), Positives = 95/197 (48%), Gaps = 17/197 (8%)

Query: 3   ERNHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEAR 62
           +RN  K   V  T+ +  Y+K G +D    +F+ M +R + ++NAM+ G   +GR  +A 
Sbjct: 321 KRNSIKLDAVLGTALLDMYAKCGRLDMGWEVFEEMKEREIFTWNAMIGGLAIHGRAEDAL 380

Query: 63  RLFEEMPE----RNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVS-----WNSMVVG 113
            LF ++ E     N ++   ++   A AG V +  ++F+ M E   V      +  MV  
Sbjct: 381 ELFSKLQEGRMKPNGITLVGVLTACAHAGFVDKGLRIFQTMREFYGVDPELEHYGCMVDL 440

Query: 114 LIRNGELNEARKVFNSMPIK-NVISWNAM-----IAGYVECCMMGEAIVLFEEMEERNVV 167
           L R+G  +EA  + NSMP+K N   W A+     I G  +       I+L  E+E +N  
Sbjct: 441 LGRSGLFSEAEDLINSMPMKPNAAVWGALLGACRIHGNFDLAERVGKILL--ELEPQNSG 498

Query: 168 TWTSMISGYCRAGEVEE 184
            +  + + Y + G  ++
Sbjct: 499 RYVLLSNIYAKVGRFDD 515


>gi|147856499|emb|CAN78640.1| hypothetical protein VITISV_031739 [Vitis vinifera]
          Length = 954

 Score =  296 bits (758), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 184/615 (29%), Positives = 324/615 (52%), Gaps = 45/615 (7%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQR---NVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVV 74
           ++ Y+  G + +A+ +F++ P     N++ +N++L   + +G   EA  ++  M +  V 
Sbjct: 73  VSVYAGFGLVSDAQRVFEVSPIECFSNLLLWNSILRANVAHGYCEEALEIYCRMRKLGVS 132

Query: 75  S------WTAMICGLADAGRVCEA--RKLFEEMPERNVVSWNSMVVGLIRNGELNEARKV 126
           +           C L  + ++C +    + E   + N+   N ++    + G +++ARKV
Sbjct: 133 ADGFTFPLVIRACALMGSRKLCRSVHGHVVEMGFQWNLHVGNELMGMYGKIGRMDDARKV 192

Query: 127 FNSMPIKNVISWNAMIAGYV---ECC-------MMGEAIVLFEEMEERNVVTWTSMISGY 176
           F  M +++ +SWN M++GY    +C        MMG A +      E N+VTWTS++S +
Sbjct: 193 FERMAVRSCVSWNTMVSGYALNYDCHGASEMFRMMGSAGL------EPNLVTWTSLLSSH 246

Query: 177 CRAGEVEEGYCLFRRMPRKNVVSWTAMIG-----GFAWNGFHKESLLLFIEMKGICDNGN 231
            R G+  E   LF RM  + + +    +            F +  ++    +KG  +N  
Sbjct: 247 ARCGQHVETMELFGRMRMRGIGATAEALAVVLSVSVDLAAFDEGKVIHGYVVKGGFEN-- 304

Query: 232 NCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHN 291
              +   NS+I  Y + G +  A+ LF  +  ++ +SW ++I  Y  +G    A+ +F  
Sbjct: 305 --YLFVKNSLICLYGKHGNVNAARILFLEIKTKNIVSWNALISSYADLGWCDEAFAIFLQ 362

Query: 292 MPDRD--------AVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAG 343
           +   D         V+W+A+I G        EA  LF  M+   V   + T + +     
Sbjct: 363 LEKTDEYPMVRPNVVSWSAVIGGFASKGQGEEALELFRRMQLAKVKANSVTIASVLSVCA 422

Query: 344 ATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNS 403
             A + LGR+IH  ++++  + ++++ N LI+MY K G       +F  + ++DL+SWN+
Sbjct: 423 ELAALHLGREIHGHVVRSLMDGNILVGNGLINMYTKSGSFKEGNLVFEKIENKDLISWNT 482

Query: 404 MVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVY 463
           MV G+  HGL    ++ F+ M++ G  P+ VTF+ +LSACSHAGLV+ G ELF+ M   +
Sbjct: 483 MVAGYGIHGLGENAIRTFDQMIKDGFEPDGVTFVAVLSACSHAGLVAEGRELFDKMIKEF 542

Query: 464 KIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEH 523
           +++P  EHY  M++LLGRAG ++EA + V  +P EP+  +WGALL +C   + N E+AE 
Sbjct: 543 RVEPQMEHYACMVDLLGRAGLLQEASKVVKSMPVEPNACVWGALLNSCRMHK-NTEVAEE 601

Query: 524 AAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQ 583
            A ++  L+   A ++++L NIYAASGR  +  K+R+    KG++K PG SW+     + 
Sbjct: 602 TASQIFNLNSEIAGSYMLLSNIYAASGRWEDSAKVRISAKTKGLKKTPGQSWIQVKKKVY 661

Query: 584 MFLSGDKIPAQVAEI 598
           MF +G+   A++ E+
Sbjct: 662 MFSAGNTQHAELEEV 676



 Score = 85.9 bits (211), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 74/268 (27%), Positives = 130/268 (48%), Gaps = 22/268 (8%)

Query: 16  SSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLF------EEMP 69
           S I  Y K G ++ A+ LF  +  +N+VS+NA++S +   G   EA  +F      +E P
Sbjct: 311 SLICLYGKHGNVNAARILFLEIKTKNIVSWNALISSYADLGWCDEAFAIFLQLEKTDEYP 370

Query: 70  --ERNVVSWTAMICGLADAGRVCEARKLFEEMP----ERNVVSWNSMVVGLIRNGELNEA 123
               NVVSW+A+I G A  G+  EA +LF  M     + N V+  S++        L+  
Sbjct: 371 MVRPNVVSWSAVIGGFASKGQGEEALELFRRMQLAKVKANSVTIASVLSVCAELAALHLG 430

Query: 124 RK----VFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRA 179
           R+    V  S+   N++  N +I  Y +     E  ++FE++E +++++W +M++GY   
Sbjct: 431 REIHGHVVRSLMDGNILVGNGLINMYTKSGSFKEGNLVFEKIENKDLISWNTMVAGYGIH 490

Query: 180 GEVEEGYCLFRRMPRKNV----VSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNV 235
           G  E     F +M +       V++ A++   +  G   E   LF +M  I +      +
Sbjct: 491 GLGENAIRTFDQMIKDGFEPDGVTFVAVLSACSHAGLVAEGRELFDKM--IKEFRVEPQM 548

Query: 236 QSCNSMINGYIRFGRLEEAQNLFDTVPV 263
           +    M++   R G L+EA  +  ++PV
Sbjct: 549 EHYACMVDLLGRAGLLQEASKVVKSMPV 576



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 60/205 (29%), Positives = 104/205 (50%), Gaps = 20/205 (9%)

Query: 11  VVHLTSSITKYSKRGFIDEAKALF-QL-------MPQRNVVSYNAMLSGFLQNGRLSEAR 62
           +V   + I+ Y+  G+ DEA A+F QL       M + NVVS++A++ GF   G+  EA 
Sbjct: 337 IVSWNALISSYADLGWCDEAFAIFLQLEKTDEYPMVRPNVVSWSAVIGGFASKGQGEEAL 396

Query: 63  RLFEEMP----ERNVVSWTAMICGLADAGRVCEARKL----FEEMPERNVVSWNSMVVGL 114
            LF  M     + N V+  +++   A+   +   R++       + + N++  N ++   
Sbjct: 397 ELFRRMQLAKVKANSVTIASVLSVCAELAALHLGREIHGHVVRSLMDGNILVGNGLINMY 456

Query: 115 IRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEME----ERNVVTWT 170
            ++G   E   VF  +  K++ISWN M+AGY    +   AI  F++M     E + VT+ 
Sbjct: 457 TKSGSFKEGNLVFEKIENKDLISWNTMVAGYGIHGLGENAIRTFDQMIKDGFEPDGVTFV 516

Query: 171 SMISGYCRAGEVEEGYCLFRRMPRK 195
           +++S    AG V EG  LF +M ++
Sbjct: 517 AVLSACSHAGLVAEGRELFDKMIKE 541



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 55/237 (23%), Positives = 102/237 (43%), Gaps = 37/237 (15%)

Query: 350 LGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVS-----RDLVSWNSM 404
           L +QIH  ++ T S     L   ++S+YA  G++ +A  +F   VS      +L+ WNS+
Sbjct: 49  LSQQIHSQIIVTGSHRSAFLAARVVSVYAGFGLVSDAQRVFE--VSPIECFSNLLLWNSI 106

Query: 405 VMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACS-----------HAGLVSRGW 453
           +     HG   E L+++  M + G   +  TF  ++ AC+           H  +V  G+
Sbjct: 107 LRANVAHGYCEEALEIYCRMRKLGVSADGFTFPLVIRACALMGSRKLCRSVHGHVVEMGF 166

Query: 454 ELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGF 513
           +        + +  G E    ++ + G+ G++ +A +   R+        W  ++     
Sbjct: 167 Q--------WNLHVGNE----LMGMYGKIGRMDDARKVFERMAVRSCVS-WNTMVSGYAL 213

Query: 514 ---CEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGV 567
              C G +E+        LE  P N      L + +A  G+HVE  +L   M ++G+
Sbjct: 214 NYDCHGASEMFRMMGSAGLE--P-NLVTWTSLLSSHARCGQHVETMELFGRMRMRGI 267


>gi|356542011|ref|XP_003539465.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Glycine max]
          Length = 876

 Score =  296 bits (758), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 192/632 (30%), Positives = 328/632 (51%), Gaps = 56/632 (8%)

Query: 10  LVVHLT---SSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFE 66
           LV HL+   S +  Y+K G + + + +F  M  R+VVS+N++L+G+  N    +   LF 
Sbjct: 133 LVHHLSVGNSLVDMYTKTGNVRDGRRVFDEMGDRDVVSWNSLLTGYSWNRFNDQVWELFC 192

Query: 67  EM------PERNVVSWT---------------------------------AMICGLADAG 87
            M      P+   VS                                   ++I  L+ +G
Sbjct: 193 LMQVEGYRPDYYTVSTVIAALANQGAVAIGMQIHALVVKLGFETERLVCNSLISMLSKSG 252

Query: 88  RVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVE 147
            + +AR +F+ M  ++ VSWNSM+ G + NG+  EA + FN+M +      +A  A  ++
Sbjct: 253 MLRDARVVFDNMENKDSVSWNSMIAGHVINGQDLEAFETFNNMQLAGAKPTHATFASVIK 312

Query: 148 CCM----MGEAIVLFEEMEERNVVT----WTSMISGYCRAGEVEEGYCLFRRMP-RKNVV 198
            C     +G   VL  +  +  + T     T+++    +  E+++ + LF  M   ++VV
Sbjct: 313 SCASLKELGLVRVLHCKTLKSGLSTNQNVLTALMVALTKCKEIDDAFSLFSLMHGVQSVV 372

Query: 199 SWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLF 258
           SWTAMI G+  NG   +++ LF  M+     G   N  + ++++         E    + 
Sbjct: 373 SWTAMISGYLQNGDTDQAVNLFSLMR---REGVKPNHFTYSTILTVQHAVFISEIHAEVI 429

Query: 259 DTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATY 318
            T   +     T+++D ++ +G +S+A  +F  +  +D +AW+AM++G  Q     EA  
Sbjct: 430 KTNYEKSSSVGTALLDAFVKIGNISDAVKVFELIETKDVIAWSAMLAGYAQAGETEEAAK 489

Query: 319 LFMEMRAHGVPPLNATFSVLFGAAGA-TANIDLGRQIHCVLMKTESESDLILENCLISMY 377
           +F ++   G+ P   TF  +  A  A TA+++ G+Q H   +K    + L + + L+++Y
Sbjct: 490 IFHQLTREGIKPNEFTFCSIINACTAPTASVEQGKQFHAYAIKLRLNNALCVSSSLVTLY 549

Query: 378 AKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFL 437
           AK G I++A+ IF     RDLVSWNSM+ G++ HG A + L+VFE M +     +++TF+
Sbjct: 550 AKRGNIESAHEIFKRQKERDLVSWNSMISGYAQHGQAKKALEVFEEMQKRNLEVDAITFI 609

Query: 438 GILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPF 497
           G++SAC+HAGLV +G   FN M + + I P  EHY  MI+L  RAG + +A + +  +PF
Sbjct: 610 GVISACAHAGLVGKGQNYFNIMINDHHINPTMEHYSCMIDLYSRAGMLGKAMDIINGMPF 669

Query: 498 EPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHK 557
            P   +W  +L A      N E+ + AA++++ L+P ++ A+V+L NIYAA+G   E+  
Sbjct: 670 PPAATVWRIVLAA-SRVHRNIELGKLAAEKIISLEPQHSAAYVLLSNIYAAAGNWHEKVN 728

Query: 558 LRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGD 589
           +R  M  + V+K PG SW+        FL+GD
Sbjct: 729 VRKLMDKRRVKKEPGYSWIEVKNKTYSFLAGD 760



 Score =  118 bits (296), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 113/506 (22%), Positives = 209/506 (41%), Gaps = 97/506 (19%)

Query: 92  ARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVF----------NSMPIKNVIS---- 137
           A++LF++ P R++   N ++    R  +  EA  +F          +S  +  V+S    
Sbjct: 55  AQQLFDQTPLRDLKQHNQLLFRYSRCDQTQEALHLFVSLYRSGLSPDSYTMSCVLSVCAG 114

Query: 138 -WNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKN 196
            +N  +   V C  +   +V        ++    S++  Y + G V +G  +F  M  ++
Sbjct: 115 SFNGTVGEQVHCQCVKCGLV-------HHLSVGNSLVDMYTKTGNVRDGRRVFDEMGDRD 167

Query: 197 VVSWTAMIGGFAWNGFHKE--SLLLFIEMKG----------------------------- 225
           VVSW +++ G++WN F+ +   L   ++++G                             
Sbjct: 168 VVSWNSLLTGYSWNRFNDQVWELFCLMQVEGYRPDYYTVSTVIAALANQGAVAIGMQIHA 227

Query: 226 -ICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSN 284
            +   G       CNS+I+   + G L +A+ +FD +  +D +SW SMI G++  GQ   
Sbjct: 228 LVVKLGFETERLVCNSLISMLSKSGMLRDARVVFDNMENKDSVSWNSMIAGHVINGQDLE 287

Query: 285 AYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGA 344
           A+  F+N                               M+  G  P +ATF+ +  +  +
Sbjct: 288 AFETFNN-------------------------------MQLAGAKPTHATFASVIKSCAS 316

Query: 345 TANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVS-RDLVSWNS 403
              + L R +HC  +K+   ++  +   L+    KC  ID+A+++FS M   + +VSW +
Sbjct: 317 LKELGLVRVLHCKTLKSGLSTNQNVLTALMVALTKCKEIDDAFSLFSLMHGVQSVVSWTA 376

Query: 404 MVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVY 463
           M+ G+  +G  ++ + +F  M   G  PN  T+  IL+   HA  +S      +A     
Sbjct: 377 MISGYLQNGDTDQAVNLFSLMRREGVKPNHFTYSTILTV-QHAVFISE----IHAEVIKT 431

Query: 464 KIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEH 523
             +       ++++   + G I +A + V  L    D   W A+L   G+ +      E 
Sbjct: 432 NYEKSSSVGTALLDAFVKIGNISDAVK-VFELIETKDVIAWSAMLA--GYAQAGE--TEE 486

Query: 524 AAKRLLELDPLN-APAHVVLCNIYAA 548
           AAK   +L      P     C+I  A
Sbjct: 487 AAKIFHQLTREGIKPNEFTFCSIINA 512


>gi|297738890|emb|CBI28135.3| unnamed protein product [Vitis vinifera]
          Length = 1974

 Score =  296 bits (758), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 208/703 (29%), Positives = 328/703 (46%), Gaps = 121/703 (17%)

Query: 15   TSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEM------ 68
            T  +  Y+K  F + A  LF  +  RNV S+ A++    + G   +A   F EM      
Sbjct: 1215 TKLVVFYAKCDFPEVAVRLFHRLRVRNVFSWAAIVGLQCRMGFSEDALLGFIEMQENGVF 1274

Query: 69   PERNVVSWTAMICG-----------------------------LADAGRVC----EARKL 95
            P+  V+      CG                             L D    C    +ARK+
Sbjct: 1275 PDNFVLPNVLKACGSLQLIGLGKGVHGYVLKMGFGACVFVSSSLVDMYGKCGVLEDARKV 1334

Query: 96   FEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCM----- 150
            F+ M E+NVV+WNSM+VG ++NG   EA  VF  M ++ +      +A ++         
Sbjct: 1335 FDSMVEKNVVTWNSMIVGYVQNGLNQEAIDVFYDMRVEGIEPTRVTVASFLSASANLDAL 1394

Query: 151  ----MGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGG 206
                 G AI +   ++  N++  +S+I+ Y + G +E+   +F RM  K+VV+W  +I  
Sbjct: 1395 IEGKQGHAIAILNSLDLDNILG-SSIINFYSKVGLIEDAELVFSRMLEKDVVTWNLLISS 1453

Query: 207  FAWNG------------------FHKESLLLFIEMKGICDN-----GNNC---------N 234
            +  +                   F   +L   +    +  N       +C         +
Sbjct: 1454 YVQHHQVGKALNMCHLMRSENLRFDSVTLSSILSASAVTSNIKLGKEGHCYCIRRNLESD 1513

Query: 235  VQSCNSMINGYIRFGRLEEAQNLFDTVPVRD----------------------------- 265
            V   NS+I+ Y +  R+++A+ +FD+   RD                             
Sbjct: 1514 VVVANSIIDMYAKCERIDDARKVFDSTTERDLVLWNTLLAAYAQVGLSGEALKLFYQMQF 1573

Query: 266  ------EISWTSMIDGYLSVGQVSNAYYLFHNMP----DRDAVAWTAMISGLVQNELFVE 315
                   ISW S+I G+L  GQV+ A  +F  M       + + WT +ISGL Q+    E
Sbjct: 1574 DSVPPNVISWNSVILGFLRNGQVNEAKDMFSQMQSLGFQPNLITWTTLISGLAQSGFGYE 1633

Query: 316  ATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLIS 375
            A   F +M+  G+ P  A+ + +  A     ++  GR IH  + + E    + +   L+ 
Sbjct: 1634 AILFFQKMQEAGIRPSIASITSVLLACTDIPSLWYGRAIHGFITRHEFCLSVPVATSLVD 1693

Query: 376  MYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVT 435
            MYAKCG ID A  +F  M S++L  +N+M+  ++ HG A E L +F+ + + G  P+S+T
Sbjct: 1694 MYAKCGSIDEAKKVFHMMSSKELPIYNAMISAYALHGQAVEALALFKHLQKEGIEPDSIT 1753

Query: 436  FLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRL 495
            F  ILSACSHAGLV+ G  LF  M   + + P  EHY  +++LL R G + EA   +L +
Sbjct: 1754 FTSILSACSHAGLVNEGLNLFADMVSKHNMNPIMEHYGCVVSLLSRCGNLDEALRLILTM 1813

Query: 496  PFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEE 555
            PF+PD  I G+LL AC       E+ E+ +K L +L+P N+  +V L N YAA+GR VE 
Sbjct: 1814 PFQPDAHILGSLLTACR-EHHEIELGEYLSKHLFKLEPSNSGNYVALSNAYAAAGRWVEV 1872

Query: 556  HKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
              +R  M ++G+RK PGCSW+   G + +F++GD    +  EI
Sbjct: 1873 SNMRDLMKVRGLRKNPGCSWIQTGGKLNVFVAGDGSHPKTEEI 1915



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 116/465 (24%), Positives = 212/465 (45%), Gaps = 47/465 (10%)

Query: 106  SWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEER- 164
            S+   +  L ++G L E+  + + M  ++      +    ++ C+   A+   +++  R 
Sbjct: 1141 SYFHHISSLCKDGHLQESVHLLSEMEFEDFQIGPEIYGELLQGCVYERALHTGQQIHARI 1200

Query: 165  ---------NVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKE 215
                     N    T ++  Y +    E    LF R+  +NV SW A++G     GF ++
Sbjct: 1201 LKNGDFFAKNEYVETKLVVFYAKCDFPEVAVRLFHRLRVRNVFSWAAIVGLQCRMGFSED 1260

Query: 216  SLLLFIEMK--GIC-DNGNNCNV-QSCNSM--------INGYIRFGRLEEAQNLFDTVPV 263
            +LL FIEM+  G+  DN    NV ++C S+        ++GY+   ++     +F +   
Sbjct: 1261 ALLGFIEMQENGVFPDNFVLPNVLKACGSLQLIGLGKGVHGYVL--KMGFGACVFVS--- 1315

Query: 264  RDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEM 323
                  +S++D Y   G + +A  +F +M +++ V W +MI G VQN L  EA  +F +M
Sbjct: 1316 ------SSLVDMYGKCGVLEDARKVFDSMVEKNVVTWNSMIVGYVQNGLNQEAIDVFYDM 1369

Query: 324  RAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVI 383
            R  G+ P   T +    A+     +  G+Q H + +    + D IL + +I+ Y+K G+I
Sbjct: 1370 RVEGIEPTRVTVASFLSASANLDALIEGKQGHAIAILNSLDLDNILGSSIINFYSKVGLI 1429

Query: 384  DNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSAC 443
            ++A  +FS M+ +D+V+WN ++  +  H    + L +   M       +SVT   ILSA 
Sbjct: 1430 EDAELVFSRMLEKDVVTWNLLISSYVQHHQVGKALNMCHLMRSENLRFDSVTLSSILSAS 1489

Query: 444  SHAGLVSRGWELFNAMFDVYKIQPGPEHYV----SMINLLGRAGKIKEAEEFVLRLPFEP 499
            +    +  G E        Y I+   E  V    S+I++  +  +I +A + V     E 
Sbjct: 1490 AVTSNIKLGKE-----GHCYCIRRNLESDVVVANSIIDMYAKCERIDDARK-VFDSTTER 1543

Query: 500  DHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCN 544
            D  +W  LL A         ++  A K   ++   + P +V+  N
Sbjct: 1544 DLVLWNTLLAAY----AQVGLSGEALKLFYQMQFDSVPPNVISWN 1584



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 78/271 (28%), Positives = 130/271 (47%), Gaps = 19/271 (7%)

Query: 4    RNHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARR 63
            R + +S VV   S I  Y+K   ID+A+ +F    +R++V +N +L+ + Q G   EA +
Sbjct: 1507 RRNLESDVVVANSIIDMYAKCERIDDARKVFDSTTERDLVLWNTLLAAYAQVGLSGEALK 1566

Query: 64   LFEEMP----ERNVVSWTAMICGLADAGRVCEARKLFEEMP----ERNVVSWNSMVVGLI 115
            LF +M       NV+SW ++I G    G+V EA+ +F +M     + N+++W +++ GL 
Sbjct: 1567 LFYQMQFDSVPPNVISWNSVILGFLRNGQVNEAKDMFSQMQSLGFQPNLITWTTLISGLA 1626

Query: 116  RNGELNEARKVFNSMPIKNVISWNAMIAGYVECCM------MGEAIVLFEEMEE--RNVV 167
            ++G   EA   F  M    +    A I   +  C        G AI  F    E   +V 
Sbjct: 1627 QSGFGYEAILFFQKMQEAGIRPSIASITSVLLACTDIPSLWYGRAIHGFITRHEFCLSVP 1686

Query: 168  TWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGIC 227
              TS++  Y + G ++E   +F  M  K +  + AMI  +A +G   E+L LF   K + 
Sbjct: 1687 VATSLVDMYAKCGSIDEAKKVFHMMSSKELPIYNAMISAYALHGQAVEALALF---KHLQ 1743

Query: 228  DNGNNCNVQSCNSMINGYIRFGRLEEAQNLF 258
              G   +  +  S+++     G + E  NLF
Sbjct: 1744 KEGIEPDSITFTSILSACSHAGLVNEGLNLF 1774


>gi|347954524|gb|AEP33762.1| organelle transcript processing 82, partial [Hesperis matronalis]
          Length = 672

 Score =  296 bits (758), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 188/562 (33%), Positives = 295/562 (52%), Gaps = 28/562 (4%)

Query: 58  LSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPE----RNVVSWNSMVVG 113
           L  A  +FE +PE N + W  M  G A +     A KL+  M       N  ++  ++  
Sbjct: 25  LPYAISVFETIPEPNQLIWNIMFRGHALSSDPVSALKLYVVMISLGLLPNFFTFPFLLKS 84

Query: 114 LIRNGELNEARKVFNSMPIK-----NVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVT 168
             ++    E +++   + +K     ++    ++I+ Y +   + +A  +F+    R+VV+
Sbjct: 85  CAKSKTFKEGQQIHGHV-LKLGFDLDLYVHTSLISMYAQNGRLEDAQKVFDRSSHRDVVS 143

Query: 169 WTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICD 228
           +T++I+GY   G +E    +F  +P K+VVSW AMI G+A  G +K++L LF EM     
Sbjct: 144 YTALITGYASRGYIESAQKMFDEIPIKDVVSWNAMISGYAETGNYKKALELFKEMMKTNV 203

Query: 229 NGNNCNVQSCNSMI--NGYIRFGRLEEAQNLFDTVPVRDEISWT-SMIDGYLSVGQVSNA 285
             +   + +  S    +G I  GR  +  +  +       +    ++ID Y   G+V  A
Sbjct: 204 KPDESTMATVVSACAQSGSIELGR--QVHSWINDHGFGSNLKIVNALIDLYSKCGEVETA 261

Query: 286 YYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGAT 345
             L   + ++D ++W  +I G     L+ EA  LF EM   G  P + T   +  A    
Sbjct: 262 CELLEGLSNKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHL 321

Query: 346 ANIDLGRQIHCVLMK-------TESESDLILENCLISMYAKCGVIDNAYNIF-SNMVSRD 397
             ID+GR IH  + K       T + S   L   LI MYAKCG ID A  +  S+  +R 
Sbjct: 322 GAIDIGRWIHVYIDKKLKGVVVTNASS---LRTSLIDMYAKCGDIDAAPQVSDSSAFNRS 378

Query: 398 LVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFN 457
           L +WN+M+ GF+ HG AN    +F  M ++G  P+ +TF+G+LSACSH+G++  G  +F 
Sbjct: 379 LSTWNAMIFGFAMHGRANAAFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGRNIFR 438

Query: 458 AMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGN 517
           +M   Y I P  EHY  MI+LLG +G  KEAEE +  +P EPD  IW +LL AC    GN
Sbjct: 439 SMRQDYNITPKLEHYGCMIDLLGHSGLFKEAEEMINTMPMEPDGVIWCSLLKACKI-HGN 497

Query: 518 AEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGV-RKVPGCSWL 576
            E+ E  AK+L++++P N  ++V+L NIYA +G+  E  K+R  +  KG+ +KVPGCS +
Sbjct: 498 LELGESFAKKLIKIEPENPGSYVLLSNIYATAGKWNEVXKIRTLLNDKGMKKKVPGCSSI 557

Query: 577 MRNGGIQMFLSGDKIPAQVAEI 598
             +  +  F+ GDK+  Q  EI
Sbjct: 558 EIDSVVHEFIIGDKLHPQNREI 579



 Score =  159 bits (403), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 129/460 (28%), Positives = 204/460 (44%), Gaps = 55/460 (11%)

Query: 45  YNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNV 104
           + +++S + QNGRL +A+++F+    R+VVS+TA+I G A  G +  A+K+F+E+P ++V
Sbjct: 113 HTSLISMYAQNGRLEDAQKVFDRSSHRDVVSYTALITGYASRGYIESAQKMFDEIPIKDV 172

Query: 105 VSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEE- 163
           VSWN+M+ G    G   +A ++F  M   NV    + +A  V  C    +I L  ++   
Sbjct: 173 VSWNAMISGYAETGNYKKALELFKEMMKTNVKPDESTMATVVSACAQSGSIELGRQVHSW 232

Query: 164 -------RNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKES 216
                   N+    ++I  Y + GEVE    L   +  K+V+SW  +IGG+     +KE+
Sbjct: 233 INDHGFGSNLKIVNALIDLYSKCGEVETACELLEGLSNKDVISWNTLIGGYTHMNLYKEA 292

Query: 217 LLLFIEMKGICDNGNNCNVQS----CNSMINGYIRFGR---LEEAQNLFDTVPVRDEISW 269
           LLLF EM    +  N+  + S    C  +  G I  GR   +   + L   V        
Sbjct: 293 LLLFQEMLRSGETPNDVTMLSILPACAHL--GAIDIGRWIHVYIDKKLKGVVVTNASSLR 350

Query: 270 TSMIDGYLSVGQVSNAYYLFHNMP-DRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGV 328
           TS+ID Y   G +  A  +  +   +R    W AMI G   +     A  +F  MR +G+
Sbjct: 351 TSLIDMYAKCGDIDAAPQVSDSSAFNRSLSTWNAMIFGFAMHGRANAAFDIFSRMRKNGI 410

Query: 329 PPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYN 388
            P + TF  L  A   +  +DLGR I   + +                          YN
Sbjct: 411 EPDDITFVGLLSACSHSGMLDLGRNIFRSMRQD-------------------------YN 445

Query: 389 IFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGL 448
           I     +  L  +  M+    H GL  E  ++  +M      P+ V +  +L AC   G 
Sbjct: 446 I-----TPKLEHYGCMIDLLGHSGLFKEAEEMINTM---PMEPDGVIWCSLLKACKIHGN 497

Query: 449 VSRGWELFNAMFDVYKIQP-GPEHYVSMINLLGRAGKIKE 487
           +  G      +    KI+P  P  YV + N+   AGK  E
Sbjct: 498 LELGESFAKKLI---KIEPENPGSYVLLSNIYATAGKWNE 534


>gi|255543164|ref|XP_002512645.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223548606|gb|EEF50097.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 716

 Score =  296 bits (758), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 186/604 (30%), Positives = 301/604 (49%), Gaps = 55/604 (9%)

Query: 37  MPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMP--------------------------- 69
           MP RN VS+  ++ G++Q+ +L E   LF  +                            
Sbjct: 1   MPDRNTVSFVTLIQGYVQSFQLDEVVDLFSRVHREGHELNPFVFTTILKLLVSVECAELA 60

Query: 70  ------------ERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRN 117
                       E N    TA+I   A  G V  AR+ F+ +  +++VSW  MV     N
Sbjct: 61  YSLHACIYKLGHESNAFVGTALIDAYAVCGSVNSARQAFDAIACKDMVSWTGMVACYAEN 120

Query: 118 GELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAI--------VLFEEMEERNVVTW 169
               ++ ++F  M +      +   AG ++ C+  EA          + +   E ++   
Sbjct: 121 DRFQDSLQLFAEMRMVGFNPNHFTFAGVLKACIGLEAFSVGKSVHGCVLKTCYEMDLYVG 180

Query: 170 TSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDN 229
             ++  Y + G+  +   +F  MP+ +V+ W+ MI  +A +   +E++ LF +M+     
Sbjct: 181 VGLLDLYTKFGDANDVLRVFEEMPKHDVIPWSFMISRYAQSNQSREAVELFGQMRRAFVL 240

Query: 230 GNNCN----VQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNA 285
            N       +QSC S+ N  ++ G+      L   +     +S  +++D Y   G++ N+
Sbjct: 241 PNQFTFASVLQSCASIEN--LQLGKQVHCHVLKVGLDGNVFVS-NALMDVYAKCGRLDNS 297

Query: 286 YYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGAT 345
             LF  +P+R+ V W  MI G VQ+    +A  L+  M    V     T+S +  A  + 
Sbjct: 298 MKLFMELPNRNEVTWNTMIVGYVQSGDGDKALSLYKNMLECQVQASEVTYSSVLRACASL 357

Query: 346 ANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMV 405
           A ++LG QIH + +KT  + D+++ N LI MYAKCG I NA  +F  +  RD +SWN+M+
Sbjct: 358 AAMELGTQIHSLSLKTIYDKDVVVGNALIDMYAKCGSIKNARLVFDMLSERDEISWNAMI 417

Query: 406 MGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKI 465
            G+S HGL  E LK F+ M E+   PN +TF+ ILSACS+AGL+  G   F +M   Y I
Sbjct: 418 SGYSMHGLVGEALKAFQMMQETECVPNKLTFVSILSACSNAGLLDIGQNYFKSMVQDYGI 477

Query: 466 QPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAA 525
           +P  EHY  M+ LLGR+G + +A + +  +P EP+ ++W ALLGAC     + ++   +A
Sbjct: 478 EPCMEHYTCMVWLLGRSGHLDKAVKLIEEIPLEPNVKVWRALLGAC-VIHNDVDLGIMSA 536

Query: 526 KRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMF 585
           +++L++DP +   HV+L NIYA + R      +R  M  KGV+K PG SW+   G +  F
Sbjct: 537 QQILQIDPQDEATHVLLSNIYARTRRWNSVASVRKFMKNKGVKKEPGLSWIENQGIVHYF 596

Query: 586 LSGD 589
             GD
Sbjct: 597 SVGD 600



 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 77/343 (22%), Positives = 149/343 (43%), Gaps = 60/343 (17%)

Query: 21  YSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEM------PER--- 71
           Y+K G  ++   +F+ MP+ +V+ ++ M+S + Q+ +  EA  LF +M      P +   
Sbjct: 187 YTKFGDANDVLRVFEEMPKHDVIPWSFMISRYAQSNQSREAVELFGQMRRAFVLPNQFTF 246

Query: 72  ------------------------------NVVSWTAMICGLADAGRVCEARKLFEEMPE 101
                                         NV    A++   A  GR+  + KLF E+P 
Sbjct: 247 ASVLQSCASIENLQLGKQVHCHVLKVGLDGNVFVSNALMDVYAKCGRLDNSMKLFMELPN 306

Query: 102 RNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVL---- 157
           RN V+WN+M+VG +++G+ ++A  ++ +M    V +     +  +  C    A+ L    
Sbjct: 307 RNEVTWNTMIVGYVQSGDGDKALSLYKNMLECQVQASEVTYSSVLRACASLAAMELGTQI 366

Query: 158 ----FEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFH 213
                + + +++VV   ++I  Y + G ++    +F  +  ++ +SW AMI G++ +G  
Sbjct: 367 HSLSLKTIYDKDVVVGNALIDMYAKCGSIKNARLVFDMLSERDEISWNAMISGYSMHGLV 426

Query: 214 KESLLLFIEMKGICDNGNNC--NVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEIS--- 268
            E+L  F  M+        C  N  +  S+++     G L+  QN F ++     I    
Sbjct: 427 GEALKAFQMMQ-----ETECVPNKLTFVSILSACSNAGLLDIGQNYFKSMVQDYGIEPCM 481

Query: 269 --WTSMIDGYLSVGQVSNAYYLFHNMP-DRDAVAWTAMISGLV 308
             +T M+      G +  A  L   +P + +   W A++   V
Sbjct: 482 EHYTCMVWLLGRSGHLDKAVKLIEEIPLEPNVKVWRALLGACV 524



 Score = 62.0 bits (149), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 39/139 (28%), Positives = 77/139 (55%), Gaps = 10/139 (7%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPER----NV 73
           I  Y+K G I  A+ +F ++ +R+ +S+NAM+SG+  +G + EA + F+ M E     N 
Sbjct: 386 IDMYAKCGSIKNARLVFDMLSERDEISWNAMISGYSMHGLVGEALKAFQMMQETECVPNK 445

Query: 74  VSWTAMICGLADAGRVCEARKLFEEMPERNVVS-----WNSMVVGLIRNGELNEARKVFN 128
           +++ +++   ++AG +   +  F+ M +   +      +  MV  L R+G L++A K+  
Sbjct: 446 LTFVSILSACSNAGLLDIGQNYFKSMVQDYGIEPCMEHYTCMVWLLGRSGHLDKAVKLIE 505

Query: 129 SMPIK-NVISWNAMIAGYV 146
            +P++ NV  W A++   V
Sbjct: 506 EIPLEPNVKVWRALLGACV 524


>gi|224077074|ref|XP_002305120.1| predicted protein [Populus trichocarpa]
 gi|222848084|gb|EEE85631.1| predicted protein [Populus trichocarpa]
          Length = 786

 Score =  296 bits (758), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 200/637 (31%), Positives = 328/637 (51%), Gaps = 61/637 (9%)

Query: 16  SSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMP----ER 71
           S +  Y+K G   +A++LF  +P R+VVS+NA+ S ++ +    EA  LF +M       
Sbjct: 50  SLVILYAKCGGFGDARSLFDAIPDRSVVSWNALFSCYVHSDMHGEAVSLFHDMVLSGIRP 109

Query: 72  NVVSWTAMI---CGLADAGRVCEARK----LFEEMPERNVVSWNSMVVGLIRNGELNEAR 124
           N  S ++MI    GL D+    + RK    L +   + +  S N++V    + G L +A 
Sbjct: 110 NEFSLSSMINVCTGLEDS---VQGRKIHGYLIKLGYDSDAFSANALVDMYAKVGILEDAS 166

Query: 125 KVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEER----NVVTWTS--------- 171
            VF+ +   +++SWNA+IAG V       A+ L  EM +     N+ T +S         
Sbjct: 167 SVFDEIAKPDIVSWNAIIAGCVLHEYHHRALELLREMNKSGMCPNMFTLSSALKACAGMA 226

Query: 172 --------------------------MISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIG 205
                                     +I  Y +   +++   +F+ MP +++++W A+I 
Sbjct: 227 LRELGRQLHSSLIKMDMGSDSFLGVGLIDMYSKCNSMDDARLVFKLMPERDMIAWNAVIS 286

Query: 206 GFAWNGFHKESLLLF--IEMKGICDNGNNCN--VQSCNSMINGYIRFGRLEEAQNLFDTV 261
           G + N   +E+  LF  +  +GI  N    +  ++S  ++   Y+   R   A +L    
Sbjct: 287 GHSQNEEDEEAASLFPLMHTEGIGFNQTTLSTVLKSIAALQANYM--CRQIHALSLKSGF 344

Query: 262 PVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFM 321
              D     S+ID Y   G V +A  +F   P  D V +T++++   Q+    EA  L++
Sbjct: 345 EF-DNYVVNSLIDTYGKCGHVEDATRVFEESPIVDLVLFTSLVTAYAQDGQGEEALRLYL 403

Query: 322 EMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCG 381
           EM+  G+ P +   S L  A  + +  + G+Q+H  ++K    SD+   N L++MYAKCG
Sbjct: 404 EMQDRGIKPDSFVCSSLLNACASLSAYEQGKQVHVHILKFGFMSDIFAGNSLVNMYAKCG 463

Query: 382 VIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILS 441
            I++A   FS +  R +VSW++M+ G + HG   E L++F+ ML+ G  PN +T + +L 
Sbjct: 464 SIEDASCAFSRIPVRGIVSWSAMIGGLAQHGYGKEALQLFKQMLKVGVPPNHITLVSVLC 523

Query: 442 ACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDH 501
           AC+HAGLV+     FN+M  ++ I+P  EHY  MI+LLGRAGK++ A E V ++PF+ + 
Sbjct: 524 ACNHAGLVAEAKHYFNSMKILFGIEPMQEHYACMIDLLGRAGKLEAAMELVNKMPFQANA 583

Query: 502 RIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMD 561
            +WGALLGA      N ++ E AA+ LL L+P  +  HV+L NIYA+ G   +  ++R  
Sbjct: 584 LVWGALLGAARI-HKNIDLGEQAAEMLLALEPEKSGTHVLLANIYASVGMWDKVARVRRL 642

Query: 562 MGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
           M    V+K PG SWL     +  F+ GD+  ++  EI
Sbjct: 643 MKDGKVKKEPGMSWLEVKDKVYTFIVGDRSHSRSTEI 679



 Score =  166 bits (419), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 126/490 (25%), Positives = 219/490 (44%), Gaps = 63/490 (12%)

Query: 108 NSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEM------ 161
           NS+V+   + G   +AR +F+++P ++V+SWNA+ + YV   M GEA+ LF +M      
Sbjct: 49  NSLVILYAKCGGFGDARSLFDAIPDRSVVSWNALFSCYVHSDMHGEAVSLFHDMVLSGIR 108

Query: 162 ---------------------------------EERNVVTWTSMISGYCRAGEVEEGYCL 188
                                             + +  +  +++  Y + G +E+   +
Sbjct: 109 PNEFSLSSMINVCTGLEDSVQGRKIHGYLIKLGYDSDAFSANALVDMYAKVGILEDASSV 168

Query: 189 FRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEM--KGICDNGNNCN--VQSCNSMING 244
           F  + + ++VSW A+I G   + +H  +L L  EM   G+C N    +  +++C  M   
Sbjct: 169 FDEIAKPDIVSWNAIIAGCVLHEYHHRALELLREMNKSGMCPNMFTLSSALKACAGM--A 226

Query: 245 YIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMI 304
               GR +   +L       D      +ID Y     + +A  +F  MP+RD +AW A+I
Sbjct: 227 LRELGR-QLHSSLIKMDMGSDSFLGVGLIDMYSKCNSMDDARLVFKLMPERDMIAWNAVI 285

Query: 305 SGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESE 364
           SG  QNE   EA  LF  M   G+     T S +  +  A     + RQIH + +K+  E
Sbjct: 286 SGHSQNEEDEEAASLFPLMHTEGIGFNQTTLSTVLKSIAALQANYMCRQIHALSLKSGFE 345

Query: 365 SDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESM 424
            D  + N LI  Y KCG +++A  +F      DLV + S+V  ++  G   E L+++  M
Sbjct: 346 FDNYVVNSLIDTYGKCGHVEDATRVFEESPIVDLVLFTSLVTAYAQDGQGEEALRLYLEM 405

Query: 425 LESGTHPNSVTFLGILSACSHAGLVSRGWEL------FNAMFDVYKIQPGPEHYVSMINL 478
            + G  P+S     +L+AC+      +G ++      F  M D++          S++N+
Sbjct: 406 QDRGIKPDSFVCSSLLNACASLSAYEQGKQVHVHILKFGFMSDIFAGN-------SLVNM 458

Query: 479 LGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPA 538
             + G I++A     R+P       W A++G      G  + A    K++L++     P 
Sbjct: 459 YAKCGSIEDASCAFSRIPVRGIVS-WSAMIGGLA-QHGYGKEALQLFKQMLKVGV--PPN 514

Query: 539 HVVLCNIYAA 548
           H+ L ++  A
Sbjct: 515 HITLVSVLCA 524



 Score =  118 bits (296), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 75/259 (28%), Positives = 126/259 (48%), Gaps = 6/259 (2%)

Query: 265 DEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMR 324
           DE    S++  Y   G   +A  LF  +PDR  V+W A+ S  V +++  EA  LF +M 
Sbjct: 44  DEFVANSLVILYAKCGGFGDARSLFDAIPDRSVVSWNALFSCYVHSDMHGEAVSLFHDMV 103

Query: 325 AHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVID 384
             G+ P   + S +        +   GR+IH  L+K   +SD    N L+ MYAK G+++
Sbjct: 104 LSGIRPNEFSLSSMINVCTGLEDSVQGRKIHGYLIKLGYDSDAFSANALVDMYAKVGILE 163

Query: 385 NAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACS 444
           +A ++F  +   D+VSWN+++ G   H   +  L++   M +SG  PN  T    L AC+
Sbjct: 164 DASSVFDEIAKPDIVSWNAIIAGCVLHEYHHRALELLREMNKSGMCPNMFTLSSALKACA 223

Query: 445 HAGLVSRGWELFNAMFDVYKIQPGPEHY--VSMINLLGRAGKIKEAEEFVLRLPFEPDHR 502
              L   G +L +++    K+  G + +  V +I++  +   + +A   V +L  E D  
Sbjct: 224 GMALRELGRQLHSSLI---KMDMGSDSFLGVGLIDMYSKCNSMDDA-RLVFKLMPERDMI 279

Query: 503 IWGALLGACGFCEGNAEIA 521
            W A++      E + E A
Sbjct: 280 AWNAVISGHSQNEEDEEAA 298



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 44/182 (24%), Positives = 91/182 (50%), Gaps = 10/182 (5%)

Query: 334 TFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNM 393
            F  +  A   T ++ LG+Q+H +++ T  +SD  + N L+ +YAKCG   +A ++F  +
Sbjct: 12  AFPSVLKACTVTKDLVLGKQVHGIVVVTGFDSDEFVANSLVILYAKCGGFGDARSLFDAI 71

Query: 394 VSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGW 453
             R +VSWN++   + H  +  E + +F  M+ SG  PN  +   +++ C+      +G 
Sbjct: 72  PDRSVVSWNALFSCYVHSDMHGEAVSLFHDMVLSGIRPNEFSLSSMINVCTGLEDSVQGR 131

Query: 454 ELFNAMFDVYKIQPGPEHYV----SMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLG 509
           ++       Y I+ G +       +++++  + G +++A      +  +PD   W A++ 
Sbjct: 132 KIHG-----YLIKLGYDSDAFSANALVDMYAKVGILEDASSVFDEIA-KPDIVSWNAIIA 185

Query: 510 AC 511
            C
Sbjct: 186 GC 187



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 49/194 (25%), Positives = 97/194 (50%), Gaps = 18/194 (9%)

Query: 14  LTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNV 73
           + S I  Y K G +++A  +F+  P  ++V + ++++ + Q+G+  EA RL+ EM +R +
Sbjct: 351 VNSLIDTYGKCGHVEDATRVFEESPIVDLVLFTSLVTAYAQDGQGEEALRLYLEMQDRGI 410

Query: 74  VSWTAMICGLADAGRVCEARKLFEEMPE-----------RNVVSWNSMVVGLIRNGELNE 122
              + +   L +A   C +   +E+  +            ++ + NS+V    + G + +
Sbjct: 411 KPDSFVCSSLLNA---CASLSAYEQGKQVHVHILKFGFMSDIFAGNSLVNMYAKCGSIED 467

Query: 123 ARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNV----VTWTSMISGYCR 178
           A   F+ +P++ ++SW+AMI G  +     EA+ LF++M +  V    +T  S++     
Sbjct: 468 ASCAFSRIPVRGIVSWSAMIGGLAQHGYGKEALQLFKQMLKVGVPPNHITLVSVLCACNH 527

Query: 179 AGEVEEGYCLFRRM 192
           AG V E    F  M
Sbjct: 528 AGLVAEAKHYFNSM 541



 Score = 58.9 bits (141), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 59/244 (24%), Positives = 99/244 (40%), Gaps = 70/244 (28%)

Query: 7   PKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQR-------------------------- 40
           P   +V  TS +T Y++ G  +EA  L+  M  R                          
Sbjct: 375 PIVDLVLFTSLVTAYAQDGQGEEALRLYLEMQDRGIKPDSFVCSSLLNACASLSAYEQGK 434

Query: 41  -------------NVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAG 87
                        ++ + N++++ + + G + +A   F  +P R +VSW+AMI GLA  G
Sbjct: 435 QVHVHILKFGFMSDIFAGNSLVNMYAKCGSIEDASCAFSRIPVRGIVSWSAMIGGLAQHG 494

Query: 88  RVCEARKLFEEMPERNV----VSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIA 143
              EA +LF++M +  V    ++  S++      G + EA+  FNSM I           
Sbjct: 495 YGKEALQLFKQMLKVGVPPNHITLVSVLCACNHAGLVAEAKHYFNSMKI----------- 543

Query: 144 GYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMP-RKNVVSWTA 202
                      +   E M+E     +  MI    RAG++E    L  +MP + N + W A
Sbjct: 544 -----------LFGIEPMQEH----YACMIDLLGRAGKLEAAMELVNKMPFQANALVWGA 588

Query: 203 MIGG 206
           ++G 
Sbjct: 589 LLGA 592


>gi|125539877|gb|EAY86272.1| hypothetical protein OsI_07642 [Oryza sativa Indica Group]
          Length = 596

 Score =  296 bits (758), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 180/519 (34%), Positives = 271/519 (52%), Gaps = 49/519 (9%)

Query: 96  FEEMPERNVVSWNSMVVGLIR-NGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEA 154
           F+++P +N  S+NS++  L R  G L +A ++ + MP  +                    
Sbjct: 87  FDDLPHKNAHSYNSLLAALARGRGTLPDALRLLDGMPPAS-------------------- 126

Query: 155 IVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKN--------VVSWTAMIGG 206
                    RNVV++ ++IS   R G   E   +F ++ R          +  +T +   
Sbjct: 127 ---------RNVVSYNTVISSLARHGRESEALRVFAQLARDRGLGQQQVAIDRFTVVSAA 177

Query: 207 FAWNGFHKESLLLFIEMKG-ICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRD 265
            A  G      L   E+ G +  +G    V   N+M++ Y + GR+E+A+ LFD + +RD
Sbjct: 178 SACAGLRDARHLR--ELHGAVVVSGMEVTVIMANAMVDAYSKAGRVEDARGLFDQMTIRD 235

Query: 266 EISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRA 325
            +SWTSMI GY     + +A  +F  MP +DA+AWTA+ISG  QN     A  LF  M  
Sbjct: 236 SVSWTSMIAGYCRASMLDDAVQVFDMMPAQDAIAWTALISGHEQNGEEEIALELFERMTG 295

Query: 326 HGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESD---LILENCLISMYAKCGV 382
            GV P         GA      +  G+++H  +++    SD   + + N LI MY+KCG 
Sbjct: 296 EGVVPTPFALVSCLGACAKVGLVARGKEVHGFILRRSIGSDPFNVFIHNALIDMYSKCGD 355

Query: 383 IDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSA 442
           +  A  +F  M+ RD++SWNSMV GFSH+G   ++L VFE ML+    P  VTFL +L+A
Sbjct: 356 MVAAMAVFDRMLERDIISWNSMVTGFSHNGQGKQSLAVFERMLKDEVQPTYVTFLAVLTA 415

Query: 443 CSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFE---P 499
           CSHAGLVS G  +  +M D + ++P  EHY + I+ LGR  +++EA EF+  L  +    
Sbjct: 416 CSHAGLVSDGRRILESMQD-HGVEPRAEHYAAFIDALGRNHQLEEASEFIKGLSSKIGLG 474

Query: 500 DHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLR 559
               WGALLGAC    GN EIAE  A+ L +L+P N+  +V+L NIY+A+G+  +  ++R
Sbjct: 475 TTGSWGALLGAC-HVHGNIEIAEEVAEALFQLEPENSGRYVMLSNIYSAAGQWDDARQVR 533

Query: 560 MDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
             M  KG+RK    SW+       MF++ D    +  EI
Sbjct: 534 ALMKGKGLRKDQAYSWIEVQRAKHMFVADDTSHHEANEI 572



 Score =  138 bits (347), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 101/346 (29%), Positives = 166/346 (47%), Gaps = 28/346 (8%)

Query: 24  RGFIDEAKALFQLMP--QRNVVSYNAMLSGFLQNGRLSEARRLFEEMPER---------- 71
           RG + +A  L   MP   RNVVSYN ++S   ++GR SEA R+F ++             
Sbjct: 109 RGTLPDALRLLDGMPPASRNVVSYNTVISSLARHGRESEALRVFAQLARDRGLGQQQVAI 168

Query: 72  ---NVVSWTAMICGLADAGRVCEAR-KLFEEMPERNVVSWNSMVVGLIRNGELNEARKVF 127
               VVS  +   GL DA  + E    +     E  V+  N+MV    + G + +AR +F
Sbjct: 169 DRFTVVSAASACAGLRDARHLRELHGAVVVSGMEVTVIMANAMVDAYSKAGRVEDARGLF 228

Query: 128 NSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYC 187
           + M I++ +SW +MIAGY    M+ +A+ +F+ M  ++ + WT++ISG+ + GE E    
Sbjct: 229 DQMTIRDSVSWTSMIAGYCRASMLDDAVQVFDMMPAQDAIAWTALISGHEQNGEEEIALE 288

Query: 188 LFRRMPRKNVV----SWTAMIGGFAWNGF--HKESLLLFIEMKGICDNGNNCNVQSCNSM 241
           LF RM  + VV    +  + +G  A  G     + +  FI  + I  +  N  +   N++
Sbjct: 289 LFERMTGEGVVPTPFALVSCLGACAKVGLVARGKEVHGFILRRSIGSDPFNVFIH--NAL 346

Query: 242 INGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDA---- 297
           I+ Y + G +  A  +FD +  RD ISW SM+ G+   GQ   +  +F  M   +     
Sbjct: 347 IDMYSKCGDMVAAMAVFDRMLERDIISWNSMVTGFSHNGQGKQSLAVFERMLKDEVQPTY 406

Query: 298 VAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAG 343
           V + A+++      L  +   +   M+ HGV P    ++    A G
Sbjct: 407 VTFLAVLTACSHAGLVSDGRRILESMQDHGVEPRAEHYAAFIDALG 452



 Score =  108 bits (270), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 73/264 (27%), Positives = 131/264 (49%), Gaps = 20/264 (7%)

Query: 11  VVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPE 70
           V+   + +  YSK G +++A+ LF  M  R+ VS+ +M++G+ +   L +A ++F+ MP 
Sbjct: 205 VIMANAMVDAYSKAGRVEDARGLFDQMTIRDSVSWTSMIAGYCRASMLDDAVQVFDMMPA 264

Query: 71  RNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMV---------VGLIRNGELN 121
           ++ ++WTA+I G    G    A +LFE M    VV     +         VGL+  G+  
Sbjct: 265 QDAIAWTALISGHEQNGEEEIALELFERMTGEGVVPTPFALVSCLGACAKVGLVARGKEV 324

Query: 122 EA---RKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCR 178
                R+   S P  NV   NA+I  Y +C  M  A+ +F+ M ER++++W SM++G+  
Sbjct: 325 HGFILRRSIGSDPF-NVFIHNALIDMYSKCGDMVAAMAVFDRMLERDIISWNSMVTGFSH 383

Query: 179 AGEVEEGYCLFRRMPRKNV----VSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCN 234
            G+ ++   +F RM +  V    V++ A++   +  G   +   +   M+   D+G    
Sbjct: 384 NGQGKQSLAVFERMLKDEVQPTYVTFLAVLTACSHAGLVSDGRRILESMQ---DHGVEPR 440

Query: 235 VQSCNSMINGYIRFGRLEEAQNLF 258
            +   + I+   R  +LEEA    
Sbjct: 441 AEHYAAFIDALGRNHQLEEASEFI 464


>gi|242088929|ref|XP_002440297.1| hypothetical protein SORBIDRAFT_09g029295 [Sorghum bicolor]
 gi|241945582|gb|EES18727.1| hypothetical protein SORBIDRAFT_09g029295 [Sorghum bicolor]
          Length = 869

 Score =  296 bits (758), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 200/637 (31%), Positives = 306/637 (48%), Gaps = 91/637 (14%)

Query: 46  NAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEM------ 99
           NAMLS  ++ G    A R+F +MPER+V SW  M+ G   AG + EA  L+  M      
Sbjct: 133 NAMLSMLVRFGETWHAWRVFAKMPERDVFSWNVMVGGYGKAGLLEEALDLYHRMMWAGVR 192

Query: 100 PE-----------RNVVSW----------------------NSMVVGLIRNGELNEARKV 126
           P+             V  W                      N+++    + G++  ARKV
Sbjct: 193 PDVYTFPCVLRSCGGVPDWRMGREVHAHVLRFGFAEEVDVLNALMTMYAKCGDVVAARKV 252

Query: 127 FNSMPIKNVISWNAMIAGYVECCMMGEAIVLF----EEMEERNVVTWTS----------- 171
           F+SM + + ISWNAMIAG+ E       + LF    ++  + N++T TS           
Sbjct: 253 FDSMAVMDCISWNAMIAGHFENGECNAGLELFLTMLQDEVQPNLMTITSVTVASGLLSDI 312

Query: 172 ------------------------MISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGF 207
                                   +I  Y   G + +   +F RM  ++ +SWTAMI G+
Sbjct: 313 TFAKEMHGLAVKRGFATDVAFCNSLIQMYASLGMMGQARTVFSRMDTRDAMSWTAMISGY 372

Query: 208 AWNGFHKESLLLF--IEMKGICDNGNNCNVQSCNSMINGYIRFG----RLEEAQNLFDTV 261
             NGF  ++L ++  +E+  +  +              G +  G     L E++     V
Sbjct: 373 EKNGFPDKALEVYALMEVNNVSPDDITIASALAACACLGSLDVGVKLHELAESKGFMSYV 432

Query: 262 PVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFM 321
            V +     ++++ Y    ++  A  +F  MP++D V+W++MI+G   N    EA Y F 
Sbjct: 433 VVTN-----ALLEMYAKSKRIDKAIEVFKCMPEKDVVSWSSMIAGFCFNHRNFEALYYFR 487

Query: 322 EMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCG 381
            M A  V P + TF     A  AT  +  G++IH  +++     +  L N LI +Y KCG
Sbjct: 488 HMLA-DVKPNSVTFIAALAACAATGALRSGKEIHAHVLRCGIAYEGYLPNALIDLYVKCG 546

Query: 382 VIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILS 441
               A+  F    ++D+VSWN M+ GF  HG     L  F  M++ G  P+ VTF+ +L 
Sbjct: 547 QTGYAWAQFCAHGAKDVVSWNIMIAGFVAHGNGETALSFFNQMVKIGECPDEVTFVALLC 606

Query: 442 ACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDH 501
           ACS  G+VS GWELF++M D Y I P  +HY  M++LL R G++ EA  F+  +P  PD 
Sbjct: 607 ACSRGGMVSEGWELFHSMTDKYSIVPNLKHYACMVDLLSRVGQLTEAYNFINEMPITPDA 666

Query: 502 RIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMD 561
            +WGALL  C     + E+ E AAK +LEL+P +A  HV+LC++YA +G   +  ++R  
Sbjct: 667 AVWGALLNGCRI-HRHVELGELAAKYVLELEPNDAGYHVLLCDLYADAGIWDKLARVRKT 725

Query: 562 MGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
           M  KG+    GCSW+   G +  FL+ D+   Q+ EI
Sbjct: 726 MREKGLDHDSGCSWVEVKGVVHAFLTDDESHPQIREI 762



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 122/478 (25%), Positives = 194/478 (40%), Gaps = 134/478 (28%)

Query: 49  LSGFLQNGRLSEARRLFE---EMPERNVVSWTAMICGLADAGRVCEARKLFE-------E 98
           L     +G+L++A  L E   E P+ +  ++ A+        R+CE R+  E        
Sbjct: 69  LRALCSHGQLAQALWLLESSAEPPDED--AYVALF-------RLCEWRRAVEPGLRACAH 119

Query: 99  MPERNVVSW------NSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMG 152
             +R+  +W      N+M+  L+R GE   A +VF  MP ++V SWN M+ GY +  ++ 
Sbjct: 120 ADDRH--AWFGLRLGNAMLSMLVRFGETWHAWRVFAKMPERDVFSWNVMVGGYGKAGLLE 177

Query: 153 EAIVLFEEM-----------------------------------------EERNVVTWTS 171
           EA+ L+  M                                         EE +V+   +
Sbjct: 178 EALDLYHRMMWAGVRPDVYTFPCVLRSCGGVPDWRMGREVHAHVLRFGFAEEVDVL--NA 235

Query: 172 MISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFI---------- 221
           +++ Y + G+V     +F  M   + +SW AMI G   NG     L LF+          
Sbjct: 236 LMTMYAKCGDVVAARKVFDSMAVMDCISWNAMIAGHFENGECNAGLELFLTMLQDEVQPN 295

Query: 222 ---------------------EMKGIC-DNGNNCNVQSCNSMINGYIRFGRLEEAQNLFD 259
                                EM G+    G   +V  CNS+I  Y   G + +A+ +F 
Sbjct: 296 LMTITSVTVASGLLSDITFAKEMHGLAVKRGFATDVAFCNSLIQMYASLGMMGQARTVFS 355

Query: 260 TVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYL 319
            +  RD +SWT+MI GY   G            PD+                    A  +
Sbjct: 356 RMDTRDAMSWTAMISGYEKNG-----------FPDK--------------------ALEV 384

Query: 320 FMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAK 379
           +  M  + V P + T +    A     ++D+G ++H +       S +++ N L+ MYAK
Sbjct: 385 YALMEVNNVSPDDITIASALAACACLGSLDVGVKLHELAESKGFMSYVVVTNALLEMYAK 444

Query: 380 CGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFL 437
              ID A  +F  M  +D+VSW+SM+ GF  +    E L  F  ML +   PNSVTF+
Sbjct: 445 SKRIDKAIEVFKCMPEKDVVSWSSMIAGFCFNHRNFEALYYFRHML-ADVKPNSVTFI 501



 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 104/448 (23%), Positives = 192/448 (42%), Gaps = 51/448 (11%)

Query: 14  LTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLF----EEMP 69
           L + +T Y+K G +  A+ +F  M   + +S+NAM++G  +NG  +    LF    ++  
Sbjct: 233 LNALMTMYAKCGDVVAARKVFDSMAVMDCISWNAMIAGHFENGECNAGLELFLTMLQDEV 292

Query: 70  ERNVVSWTAMICGLADAGRVCEARKLFEEMPER----NVVSWNSMVVGLIRNGELNEARK 125
           + N+++ T++         +  A+++     +R    +V   NS++      G + +AR 
Sbjct: 293 QPNLMTITSVTVASGLLSDITFAKEMHGLAVKRGFATDVAFCNSLIQMYASLGMMGQART 352

Query: 126 VFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERN-------------------- 165
           VF+ M  ++ +SW AMI+GY +     +A+ ++  ME  N                    
Sbjct: 353 VFSRMDTRDAMSWTAMISGYEKNGFPDKALEVYALMEVNNVSPDDITIASALAACACLGS 412

Query: 166 -------------------VVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGG 206
                              VV   +++  Y ++  +++   +F+ MP K+VVSW++MI G
Sbjct: 413 LDVGVKLHELAESKGFMSYVVVTNALLEMYAKSKRIDKAIEVFKCMPEKDVVSWSSMIAG 472

Query: 207 FAWNGFHKESLLLFIEM-KGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRD 265
           F +N  + E+L  F  M   +  N              G +R G+   A  L   +    
Sbjct: 473 FCFNHRNFEALYYFRHMLADVKPNSVTFIAALAACAATGALRSGKEIHAHVLRCGIAYEG 532

Query: 266 EISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRA 325
            +   ++ID Y+  GQ   A+  F     +D V+W  MI+G V +     A   F +M  
Sbjct: 533 YLP-NALIDLYVKCGQTGYAWAQFCAHGAKDVVSWNIMIAGFVAHGNGETALSFFNQMVK 591

Query: 326 HGVPPLNATFSVLFGAAGATANIDLGRQI-HCVLMKTESESDLILENCLISMYAKCGVID 384
            G  P   TF  L  A      +  G ++ H +  K     +L    C++ + ++ G + 
Sbjct: 592 IGECPDEVTFVALLCACSRGGMVSEGWELFHSMTDKYSIVPNLKHYACMVDLLSRVGQLT 651

Query: 385 NAYNIFSNM-VSRDLVSWNSMVMGFSHH 411
            AYN  + M ++ D   W +++ G   H
Sbjct: 652 EAYNFINEMPITPDAAVWGALLNGCRIH 679



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 86/348 (24%), Positives = 152/348 (43%), Gaps = 55/348 (15%)

Query: 11  VVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPE 70
           V    S I  Y+  G + +A+ +F  M  R+ +S+ AM+SG+ +NG   +A  ++  M  
Sbjct: 331 VAFCNSLIQMYASLGMMGQARTVFSRMDTRDAMSWTAMISGYEKNGFPDKALEVYALMEV 390

Query: 71  RNV----VSWTAMICGLADAGRVCEARKLFEEMPERNVVSW----NSMVVGLIRNGELNE 122
            NV    ++  + +   A  G +    KL E    +  +S+    N+++    ++  +++
Sbjct: 391 NNVSPDDITIASALAACACLGSLDVGVKLHELAESKGFMSYVVVTNALLEMYAKSKRIDK 450

Query: 123 ARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEM---EERNVVTW---------- 169
           A +VF  MP K+V+SW++MIAG+       EA+  F  M    + N VT+          
Sbjct: 451 AIEVFKCMPEKDVVSWSSMIAGFCFNHRNFEALYYFRHMLADVKPNSVTFIAALAACAAT 510

Query: 170 -------------------------TSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMI 204
                                     ++I  Y + G+    +  F     K+VVSW  MI
Sbjct: 511 GALRSGKEIHAHVLRCGIAYEGYLPNALIDLYVKCGQTGYAWAQFCAHGAKDVVSWNIMI 570

Query: 205 GGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVR 264
            GF  +G  + +L  F +M  I   G   +  +  +++    R G + E   LF ++  +
Sbjct: 571 AGFVAHGNGETALSFFNQMVKI---GECPDEVTFVALLCACSRGGMVSEGWELFHSMTDK 627

Query: 265 DEI-----SWTSMIDGYLSVGQVSNAYYLFHNMP-DRDAVAWTAMISG 306
             I      +  M+D    VGQ++ AY   + MP   DA  W A+++G
Sbjct: 628 YSIVPNLKHYACMVDLLSRVGQLTEAYNFINEMPITPDAAVWGALLNG 675



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 72/297 (24%), Positives = 133/297 (44%), Gaps = 50/297 (16%)

Query: 9   SLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEM 68
           S VV   + +  Y+K   ID+A  +F+ MP+++VVS+++M++GF  N R  EA   F  M
Sbjct: 430 SYVVVTNALLEMYAKSKRIDKAIEVFKCMPEKDVVSWSSMIAGFCFNHRNFEALYYFRHM 489

Query: 69  ---PERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSW----NSMVVGLIRNGELN 121
               + N V++ A +   A  G +   +++   +    +       N+++   ++ G+  
Sbjct: 490 LADVKPNSVTFIAALAACAATGALRSGKEIHAHVLRCGIAYEGYLPNALIDLYVKCGQTG 549

Query: 122 EARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEM----EERNVVTWTSMISGYC 177
            A   F +   K+V+SWN MIAG+V       A+  F +M    E  + VT+ +++    
Sbjct: 550 YAWAQFCAHGAKDVVSWNIMIAGFVAHGNGETALSFFNQMVKIGECPDEVTFVALLCACS 609

Query: 178 RAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQS 237
           R G V EG+ LF  M  K  +                                   N++ 
Sbjct: 610 RGGMVSEGWELFHSMTDKYSIV---------------------------------PNLKH 636

Query: 238 CNSMINGYIRFGRLEEAQNLFDTVPVR-DEISWTSMIDG-----YLSVGQVSNAYYL 288
              M++   R G+L EA N  + +P+  D   W ++++G     ++ +G+++  Y L
Sbjct: 637 YACMVDLLSRVGQLTEAYNFINEMPITPDAAVWGALLNGCRIHRHVELGELAAKYVL 693



 Score = 58.9 bits (141), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 44/77 (57%)

Query: 367 LILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLE 426
           L L N ++SM  + G   +A+ +F+ M  RD+ SWN MV G+   GL  E L ++  M+ 
Sbjct: 129 LRLGNAMLSMLVRFGETWHAWRVFAKMPERDVFSWNVMVGGYGKAGLLEEALDLYHRMMW 188

Query: 427 SGTHPNSVTFLGILSAC 443
           +G  P+  TF  +L +C
Sbjct: 189 AGVRPDVYTFPCVLRSC 205


>gi|224138230|ref|XP_002322762.1| predicted protein [Populus trichocarpa]
 gi|222867392|gb|EEF04523.1| predicted protein [Populus trichocarpa]
          Length = 617

 Score =  296 bits (758), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 159/468 (33%), Positives = 259/468 (55%), Gaps = 2/468 (0%)

Query: 132 IKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRR 191
           I +V + + +I+  +   ++  A  +F +++  N+  + S I G+  + + ++ +  + +
Sbjct: 44  IFDVFAASCLISISINKNLLDYAAQVFYQIQNPNLFIYNSFIRGFSGSKDPDKSFHFYVQ 103

Query: 192 MPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKG-ICDNGNNCNVQSCNSMINGYIRFGR 250
             R  +V               K SL + I+  G I  +G + +V   NS++  Y   G 
Sbjct: 104 SKRNGLVPDNLTYPFLVKACTQKGSLDMGIQAHGQIIRHGFDSDVYVQNSLVTMYSTLGD 163

Query: 251 LEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQN 310
           ++ A  +F  +   D +SWTSM+ GY+  G V++A  LF  MP+++ V W+ MISG  +N
Sbjct: 164 IKSASYVFRRISCLDVVSWTSMVAGYIKSGDVTSARKLFDKMPEKNLVTWSVMISGYAKN 223

Query: 311 ELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILE 370
             F +A  L+  +++ GV         +  +      ++LG + H  +++ +   +LIL 
Sbjct: 224 SFFDKAIELYFLLQSEGVHANETVMVSVIASCAHLGALELGERAHDYILRNKMTVNLILG 283

Query: 371 NCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTH 430
             L+ MYA+CG ID A  +F  +  RD +SW +++ GF+ HG A + L+ F  M ++G  
Sbjct: 284 TALVDMYARCGSIDKAIWVFDQLPGRDALSWTTLIAGFAMHGYAEKALEYFSRMEKAGLT 343

Query: 431 PNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEE 490
           P  +TF  +LSACSH GLV RG ELF +M   Y+I+P  EHY  M++LLGRAGK+ EAE+
Sbjct: 344 PREITFTAVLSACSHGGLVERGLELFESMKRDYRIEPRLEHYGCMVDLLGRAGKLAEAEK 403

Query: 491 FVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASG 550
           FV  +P +P+  IWGALLGAC     N+EIAE A K L+EL P ++  +V+L NIYA + 
Sbjct: 404 FVNEMPMKPNAPIWGALLGACRI-HKNSEIAERAGKTLIELKPEHSGYYVLLSNIYARTN 462

Query: 551 RHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
           +      +R  M  +GV K PG +    +G +  F  GDK   ++ +I
Sbjct: 463 KWENVENIRQMMKERGVVKPPGYTLFEMDGKVHKFTIGDKTHPEIQQI 510



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 71/262 (27%), Positives = 141/262 (53%), Gaps = 16/262 (6%)

Query: 16  SSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVS 75
           S +T YS  G I  A  +F+ +   +VVS+ +M++G++++G ++ AR+LF++MPE+N+V+
Sbjct: 153 SLVTMYSTLGDIKSASYVFRRISCLDVVSWTSMVAGYIKSGDVTSARKLFDKMPEKNLVT 212

Query: 76  WTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRN---------GELNEARKV 126
           W+ MI G A      +A +L+  +    V +  +++V +I +         GE      +
Sbjct: 213 WSVMISGYAKNSFFDKAIELYFLLQSEGVHANETVMVSVIASCAHLGALELGERAHDYIL 272

Query: 127 FNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGY 186
            N M + N+I   A++  Y  C  + +AI +F+++  R+ ++WT++I+G+   G  E+  
Sbjct: 273 RNKMTV-NLILGTALVDMYARCGSIDKAIWVFDQLPGRDALSWTTLIAGFAMHGYAEKAL 331

Query: 187 CLFRRMPRKNV----VSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMI 242
             F RM +  +    +++TA++   +  G  +  L LF  MK   D      ++    M+
Sbjct: 332 EYFSRMEKAGLTPREITFTAVLSACSHGGLVERGLELFESMKR--DYRIEPRLEHYGCMV 389

Query: 243 NGYIRFGRLEEAQNLFDTVPVR 264
           +   R G+L EA+   + +P++
Sbjct: 390 DLLGRAGKLAEAEKFVNEMPMK 411



 Score =  105 bits (263), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 67/278 (24%), Positives = 141/278 (50%), Gaps = 17/278 (6%)

Query: 41  NVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMP 100
           +V   N++++ +   G +  A  +F  +   +VVSWT+M+ G   +G V  ARKLF++MP
Sbjct: 147 DVYVQNSLVTMYSTLGDIKSASYVFRRISCLDVVSWTSMVAGYIKSGDVTSARKLFDKMP 206

Query: 101 ERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEE 160
           E+N+V+W+ M+ G  +N   ++A +++  +  + V +   ++   +  C    A+ L E 
Sbjct: 207 EKNLVTWSVMISGYAKNSFFDKAIELYFLLQSEGVHANETVMVSVIASCAHLGALELGER 266

Query: 161 MEER--------NVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGF 212
             +         N++  T+++  Y R G +++   +F ++P ++ +SWT +I GFA +G+
Sbjct: 267 AHDYILRNKMTVNLILGTALVDMYARCGSIDKAIWVFDQLPGRDALSWTTLIAGFAMHGY 326

Query: 213 HKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEIS---- 268
            +++L  F  M+     G      +  ++++     G +E    LF+++     I     
Sbjct: 327 AEKALEYFSRME---KAGLTPREITFTAVLSACSHGGLVERGLELFESMKRDYRIEPRLE 383

Query: 269 -WTSMIDGYLSVGQVSNAYYLFHNMPDR-DAVAWTAMI 304
            +  M+D     G+++ A    + MP + +A  W A++
Sbjct: 384 HYGCMVDLLGRAGKLAEAEKFVNEMPMKPNAPIWGALL 421



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 58/201 (28%), Positives = 99/201 (49%), Gaps = 22/201 (10%)

Query: 11  VVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPE 70
           VV  TS +  Y K G +  A+ LF  MP++N+V+++ M+SG+ +N    +A  L+  +  
Sbjct: 179 VVSWTSMVAGYIKSGDVTSARKLFDKMPEKNLVTWSVMISGYAKNSFFDKAIELYFLLQS 238

Query: 71  RNV-VSWTAMICGLADAGRVCEARKLFEEMPER--NVVSWNSMVVGLI----------RN 117
             V  + T M+  +A    +        E+ ER  + +  N M V LI          R 
Sbjct: 239 EGVHANETVMVSVIASCAHLGAL-----ELGERAHDYILRNKMTVNLILGTALVDMYARC 293

Query: 118 GELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNV----VTWTSMI 173
           G +++A  VF+ +P ++ +SW  +IAG+       +A+  F  ME+  +    +T+T+++
Sbjct: 294 GSIDKAIWVFDQLPGRDALSWTTLIAGFAMHGYAEKALEYFSRMEKAGLTPREITFTAVL 353

Query: 174 SGYCRAGEVEEGYCLFRRMPR 194
           S     G VE G  LF  M R
Sbjct: 354 SACSHGGLVERGLELFESMKR 374



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 53/219 (24%), Positives = 102/219 (46%), Gaps = 20/219 (9%)

Query: 7   PKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNV-VSYNAMLS--------GFLQNGR 57
           P+  +V  +  I+ Y+K  F D+A  L+ L+    V  +   M+S        G L+ G 
Sbjct: 206 PEKNLVTWSVMISGYAKNSFFDKAIELYFLLQSEGVHANETVMVSVIASCAHLGALELGE 265

Query: 58  LSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRN 117
            +    L  +M   N++  TA++   A  G + +A  +F+++P R+ +SW +++ G   +
Sbjct: 266 RAHDYILRNKMTV-NLILGTALVDMYARCGSIDKAIWVFDQLPGRDALSWTTLIAGFAMH 324

Query: 118 GELNEARKVFNSMPIKNV----ISWNAMIAGYVECCMMGEAIVLFEEME-----ERNVVT 168
           G   +A + F+ M    +    I++ A+++      ++   + LFE M+     E  +  
Sbjct: 325 GYAEKALEYFSRMEKAGLTPREITFTAVLSACSHGGLVERGLELFESMKRDYRIEPRLEH 384

Query: 169 WTSMISGYCRAGEVEEGYCLFRRMPRK-NVVSWTAMIGG 206
           +  M+    RAG++ E       MP K N   W A++G 
Sbjct: 385 YGCMVDLLGRAGKLAEAEKFVNEMPMKPNAPIWGALLGA 423



 Score = 48.5 bits (114), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 35/147 (23%), Positives = 69/147 (46%), Gaps = 14/147 (9%)

Query: 354 IHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGL 413
           IH  L++  +  D+   +CLIS+     ++D A  +F  + + +L  +NS + GFS    
Sbjct: 34  IHAHLIRAHTIFDVFAASCLISISINKNLLDYAAQVFYQIQNPNLFIYNSFIRGFSGSKD 93

Query: 414 ANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMF------DVYKIQP 467
            +++   +     +G  P+++T+  ++ AC+  G +  G +    +       DVY +Q 
Sbjct: 94  PDKSFHFYVQSKRNGLVPDNLTYPFLVKACTQKGSLDMGIQAHGQIIRHGFDSDVY-VQN 152

Query: 468 GPEHYVSMINLLGRAGKIKEAEEFVLR 494
                 S++ +    G IK A  +V R
Sbjct: 153 ------SLVTMYSTLGDIKSA-SYVFR 172


>gi|8778977|gb|AAF79892.1|AC022472_1 Contains similarity to an unknown protein F28A21.160 gi|7486269
           from Arabidopsis thaliana BAC F28A21 gi|T04867 and
           contains multiple PPR PF|01535 repeats. EST gb|AI999742
           comes from this gene. This gene may be cut off, partial
           [Arabidopsis thaliana]
          Length = 757

 Score =  296 bits (758), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 180/592 (30%), Positives = 304/592 (51%), Gaps = 55/592 (9%)

Query: 58  LSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRN 117
            ++A  + + +P+  + S++++I  L  A    ++  +F  M    ++  + ++  L + 
Sbjct: 66  FNDADLVLQSIPDPTIYSFSSLIYALTKAKLFTQSIGVFSRMFSHGLIPDSHVLPNLFKV 125

Query: 118 GELNEARKVFNSMPIKNVIS---WNAMIAG-----YVECCMMGEAIVLFEEMEERNVVTW 169
                A KV   +   + +S    +A + G     Y+ C  MG+A  +F+ M +++VVT 
Sbjct: 126 CAELSAFKVGKQIHCVSCVSGLDMDAFVQGSMFHMYMRCGRMGDARKVFDRMSDKDVVTC 185

Query: 170 TSMISGYCRAGEVEEGYCLFRRMP----RKNVVSWTAMIGGFAWNGFHKESLLLF--IEM 223
           ++++  Y R G +EE   +   M       N+VSW  ++ GF  +G+HKE++++F  I  
Sbjct: 186 SALLCAYARKGCLEEVVRILSEMESSGIEANIVSWNGILSGFNRSGYHKEAVVMFQKIHH 245

Query: 224 KGICDN---------------------------------GNNCNVQSCNSMINGYIRFGR 250
            G C +                                  + C +   ++MI+ Y + G 
Sbjct: 246 LGFCPDQVTVSSVLPSVGDSEMLNMGRLIHGYVIKQGLLKDKCVI---SAMIDMYGKSGH 302

Query: 251 LEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDR----DAVAWTAMISG 306
           +    +LF+   + +     + I G    G V  A  +F    ++    + V+WT++I+G
Sbjct: 303 VYGIISLFNQFEMMEAGVCNAYITGLSRNGLVDKALEMFELFKEQTMELNVVSWTSIIAG 362

Query: 307 LVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESD 366
             QN   +EA  LF EM+  GV P + T   +  A G  A +  GR  H   ++     +
Sbjct: 363 CAQNGKDIEALELFREMQVAGVKPNHVTIPSMLPACGNIAALGHGRSTHGFAVRVHLLDN 422

Query: 367 LILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLE 426
           + + + LI MYAKCG I+ +  +F+ M +++LV WNS++ GFS HG A E + +FES++ 
Sbjct: 423 VHVGSALIDMYAKCGRINLSQIVFNMMPTKNLVCWNSLMNGFSMHGKAKEVMSIFESLMR 482

Query: 427 SGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIK 486
           +   P+ ++F  +LSAC   GL   GW+ F  M + Y I+P  EHY  M+NLLGRAGK++
Sbjct: 483 TRLKPDFISFTSLLSACGQVGLTDEGWKYFKMMSEEYGIKPRLEHYSCMVNLLGRAGKLQ 542

Query: 487 EAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIY 546
           EA + +  +PFEPD  +WGALL +C   + N ++AE AA++L  L+P N   +V+L NIY
Sbjct: 543 EAYDLIKEMPFEPDSCVWGALLNSCRL-QNNVDLAEIAAEKLFHLEPENPGTYVLLSNIY 601

Query: 547 AASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
           AA G   E   +R  M   G++K PGCSW+     +   L+GDK   Q+ +I
Sbjct: 602 AAKGMWTEVDSIRNKMESLGLKKNPGCSWIQVKNRVYTLLAGDKSHPQIDQI 653



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 98/410 (23%), Positives = 181/410 (44%), Gaps = 52/410 (12%)

Query: 47  AMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMP----ER 102
           +M   +++ GR+ +AR++F+ M +++VV+ +A++C  A  G + E  ++  EM     E 
Sbjct: 156 SMFHMYMRCGRMGDARKVFDRMSDKDVVTCSALLCAYARKGCLEEVVRILSEMESSGIEA 215

Query: 103 NVVSWNSMVVGLIRNGELNEARKVFN-------------------SMPIKNVISWNAMIA 143
           N+VSWN ++ G  R+G   EA  +F                    S+    +++   +I 
Sbjct: 216 NIVSWNGILSGFNRSGYHKEAVVMFQKIHHLGFCPDQVTVSSVLPSVGDSEMLNMGRLIH 275

Query: 144 GYV--------ECC------MMGEA------IVLFEEMEERNVVTWTSMISGYCRAGEVE 183
           GYV        +C       M G++      I LF + E        + I+G  R G V+
Sbjct: 276 GYVIKQGLLKDKCVISAMIDMYGKSGHVYGIISLFNQFEMMEAGVCNAYITGLSRNGLVD 335

Query: 184 EGYCLFRRMPRK----NVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCN 239
           +   +F     +    NVVSWT++I G A NG   E+L LF EM+      N+  + S  
Sbjct: 336 KALEMFELFKEQTMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNHVTIPSML 395

Query: 240 SMINGYIRFGRLEEAQNLFDTVPVRDEIS-WTSMIDGYLSVGQVSNAYYLFHNMPDRDAV 298
                    G           V + D +   +++ID Y   G+++ +  +F+ MP ++ V
Sbjct: 396 PACGNIAALGHGRSTHGFAVRVHLLDNVHVGSALIDMYAKCGRINLSQIVFNMMPTKNLV 455

Query: 299 AWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVL 358
            W ++++G   +    E   +F  +    + P   +F+ L  A G     D G + +  +
Sbjct: 456 CWNSLMNGFSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSACGQVGLTDEGWK-YFKM 514

Query: 359 MKTESESDLILEN--CLISMYAKCGVIDNAYNIFSNM-VSRDLVSWNSMV 405
           M  E      LE+  C++++  + G +  AY++   M    D   W +++
Sbjct: 515 MSEEYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKEMPFEPDSCVWGALL 564



 Score = 95.5 bits (236), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 78/385 (20%), Positives = 174/385 (45%), Gaps = 15/385 (3%)

Query: 141 MIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSW 200
           +IA Y       +A ++ + + +  + +++S+I    +A    +   +F RM    ++  
Sbjct: 56  LIASYSNYNCFNDADLVLQSIPDPTIYSFSSLIYALTKAKLFTQSIGVFSRMFSHGLIPD 115

Query: 201 TAMIGGFAWNGFHKESLLLFIEMKGI-CDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFD 259
           + ++           +  +  ++  + C +G + +     SM + Y+R GR+ +A+ +FD
Sbjct: 116 SHVLPNLFKVCAELSAFKVGKQIHCVSCVSGLDMDAFVQGSMFHMYMRCGRMGDARKVFD 175

Query: 260 TVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMP----DRDAVAWTAMISGLVQNELFVE 315
            +  +D ++ ++++  Y   G +     +   M     + + V+W  ++SG  ++    E
Sbjct: 176 RMSDKDVVTCSALLCAYARKGCLEEVVRILSEMESSGIEANIVSWNGILSGFNRSGYHKE 235

Query: 316 ATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLIS 375
           A  +F ++   G  P   T S +  + G +  +++GR IH  ++K     D  + + +I 
Sbjct: 236 AVVMFQKIHHLGFCPDQVTVSSVLPSVGDSEMLNMGRLIHGYVIKQGLLKDKCVISAMID 295

Query: 376 MYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVT 435
           MY K G +    ++F+     +    N+ + G S +GL ++ L++FE   E     N V+
Sbjct: 296 MYGKSGHVYGIISLFNQFEMMEAGVCNAYITGLSRNGLVDKALEMFELFKEQTMELNVVS 355

Query: 436 FLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKI------KEAE 489
           +  I++ C+  G      ELF  M  V  ++P   ++V++ ++L   G I      +   
Sbjct: 356 WTSIIAGCAQNGKDIEALELFREM-QVAGVKP---NHVTIPSMLPACGNIAALGHGRSTH 411

Query: 490 EFVLRLPFEPDHRIWGALLGACGFC 514
            F +R+    +  +  AL+     C
Sbjct: 412 GFAVRVHLLDNVHVGSALIDMYAKC 436



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 90/366 (24%), Positives = 177/366 (48%), Gaps = 41/366 (11%)

Query: 11  VVHLTSSITKYSKRGFIDEAKALFQLMP----QRNVVSYNAMLSGFLQNGRLSEARRLFE 66
           VV  ++ +  Y+++G ++E   +   M     + N+VS+N +LSGF ++G   EA  +F+
Sbjct: 182 VVTCSALLCAYARKGCLEEVVRILSEMESSGIEANIVSWNGILSGFNRSGYHKEAVVMFQ 241

Query: 67  EM------PERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLI----R 116
           ++      P++  VS  +++  + D+  +   R +   + ++ ++    ++  +I    +
Sbjct: 242 KIHHLGFCPDQVTVS--SVLPSVGDSEMLNMGRLIHGYVIKQGLLKDKCVISAMIDMYGK 299

Query: 117 NGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEER----NVVTWTSM 172
           +G +     +FN   +      NA I G     ++ +A+ +FE  +E+    NVV+WTS+
Sbjct: 300 SGHVYGIISLFNQFEMMEAGVCNAYITGLSRNGLVDKALEMFELFKEQTMELNVVSWTSI 359

Query: 173 ISGYCRAGEVEEGYCLFRRMP----RKNVVSWTAMI---GGFAWNGFHKESLLLFIEMKG 225
           I+G  + G+  E   LFR M     + N V+  +M+   G  A  G H  S   F     
Sbjct: 360 IAGCAQNGKDIEALELFREMQVAGVKPNHVTIPSMLPACGNIAALG-HGRSTHGFAVRVH 418

Query: 226 ICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNA 285
           + D     NV   +++I+ Y + GR+  +Q +F+ +P ++ + W S+++G+   G+    
Sbjct: 419 LLD-----NVHVGSALIDMYAKCGRINLSQIVFNMMPTKNLVCWNSLMNGFSMHGKAKEV 473

Query: 286 YYLFHN-MPDR---DAVAWTAMISGLVQNELFVEA-TYLFMEMRAHGVPPLNATFSV--- 337
             +F + M  R   D +++T+++S   Q  L  E   Y  M    +G+ P    +S    
Sbjct: 474 MSIFESLMRTRLKPDFISFTSLLSACGQVGLTDEGWKYFKMMSEEYGIKPRLEHYSCMVN 533

Query: 338 LFGAAG 343
           L G AG
Sbjct: 534 LLGRAG 539



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 82/338 (24%), Positives = 145/338 (42%), Gaps = 33/338 (9%)

Query: 36  LMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKL 95
           L+  + V+S  AM+  + ++G +     LF +          A I GL+  G V +A ++
Sbjct: 283 LLKDKCVIS--AMIDMYGKSGHVYGIISLFNQFEMMEAGVCNAYITGLSRNGLVDKALEM 340

Query: 96  FEEMPER----NVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMM 151
           FE   E+    NVVSW S++ G  +NG+  EA ++F  M +  V   +  I   +  C  
Sbjct: 341 FELFKEQTMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNHVTIPSMLPAC-- 398

Query: 152 GEAIVLFEEMEER----------NVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWT 201
           G    L                 NV   +++I  Y + G +     +F  MP KN+V W 
Sbjct: 399 GNIAALGHGRSTHGFAVRVHLLDNVHVGSALIDMYAKCGRINLSQIVFNMMPTKNLVCWN 458

Query: 202 AMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTV 261
           +++ GF+ +G  KE + +F   + +       +  S  S+++   + G  +E    F  +
Sbjct: 459 SLMNGFSMHGKAKEVMSIF---ESLMRTRLKPDFISFTSLLSACGQVGLTDEGWKYFKMM 515

Query: 262 PVRDEIS-----WTSMIDGYLSVGQVSNAYYLFHNMP-DRDAVAWTAMI-SGLVQNELFV 314
                I      ++ M++     G++  AY L   MP + D+  W A++ S  +QN   V
Sbjct: 516 SEEYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKEMPFEPDSCVWGALLNSCRLQNN--V 573

Query: 315 EATYLFMEMRAHGVPPLNATFSVL---FGAAGATANID 349
           +   +  E   H  P    T+ +L   + A G    +D
Sbjct: 574 DLAEIAAEKLFHLEPENPGTYVLLSNIYAAKGMWTEVD 611



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/142 (28%), Positives = 76/142 (53%), Gaps = 11/142 (7%)

Query: 12  VHLTSS-ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMP- 69
           VH+ S+ I  Y+K G I+ ++ +F +MP +N+V +N++++GF  +G+  E   +FE +  
Sbjct: 423 VHVGSALIDMYAKCGRINLSQIVFNMMPTKNLVCWNSLMNGFSMHGKAKEVMSIFESLMR 482

Query: 70  ---ERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVS-----WNSMVVGLIRNGELN 121
              + + +S+T+++      G   E  K F+ M E   +      ++ MV  L R G+L 
Sbjct: 483 TRLKPDFISFTSLLSACGQVGLTDEGWKYFKMMSEEYGIKPRLEHYSCMVNLLGRAGKLQ 542

Query: 122 EARKVFNSMPIK-NVISWNAMI 142
           EA  +   MP + +   W A++
Sbjct: 543 EAYDLIKEMPFEPDSCVWGALL 564


>gi|147832325|emb|CAN66581.1| hypothetical protein VITISV_030261 [Vitis vinifera]
          Length = 622

 Score =  296 bits (757), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 165/450 (36%), Positives = 247/450 (54%), Gaps = 10/450 (2%)

Query: 154 AIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRM-----PRKNVVSWTAMIGGFA 208
           A  +F+ +   N   W +MI GY  + E EE   L+  M     P  N  ++  ++   +
Sbjct: 71  ARTVFDRIFRPNTFMWNTMIRGYSNSKEPEEALLLYHHMLYHSVPH-NAYTFPFLLKACS 129

Query: 209 WNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEIS 268
                +E+  +      I   G    + + NS++N Y + G ++ A+ LFD V  RD +S
Sbjct: 130 SMSASEETQQIHAH---IIKMGFGSEIYTTNSLLNVYSKSGDIKSARLLFDQVDQRDTVS 186

Query: 269 WTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGV 328
           W SMIDGY   G++  AY +F++MP+R+ ++WT+MISG V      EA  LF  M+  G+
Sbjct: 187 WNSMIDGYTKCGEIEMAYEIFNHMPERNIISWTSMISGCVGAGKPKEALNLFHRMQTAGI 246

Query: 329 PPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYN 388
              N        A      +D G+ IH  + K E E D IL   LI MYAKCG ++ A  
Sbjct: 247 KLDNVALVSTLQACADLGVLDQGKWIHAYIKKHEIEIDPILGCVLIDMYAKCGDLEEAIE 306

Query: 389 IFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGL 448
           +F  M  + +  W +M+ G++ HG   E L+ F  M  +G  PN +TF GIL+ACSHAGL
Sbjct: 307 VFRKMEEKGVSVWTAMISGYAIHGRGREALEWFMKMQTAGVEPNQMTFTGILTACSHAGL 366

Query: 449 VSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALL 508
           V     LF +M  ++  +P  EHY  M++LLGRAG +KEAEE +  +P +P+  IWGALL
Sbjct: 367 VHEAKLLFESMERIHGFKPSIEHYGCMVDLLGRAGLLKEAEELIENMPVKPNAAIWGALL 426

Query: 509 GACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVR 568
            AC    GN E+ +   K L+++DP +   ++ L +I+AA+G   +  ++R  M  +GV 
Sbjct: 427 NACHI-HGNLELGKQIGKILIQVDPGHGGRYIHLASIHAAAGEWNQAARVRRQMKEQGVS 485

Query: 569 KVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
           K+PGCS +  NG    FL+GD+   Q+ EI
Sbjct: 486 KLPGCSVISVNGTAHEFLAGDESHPQIKEI 515



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 90/290 (31%), Positives = 149/290 (51%), Gaps = 23/290 (7%)

Query: 12  VHLTSSITK-YSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPE 70
           ++ T+S+   YSK G I  A+ LF  + QR+ VS+N+M+ G+ + G +  A  +F  MPE
Sbjct: 153 IYTTNSLLNVYSKSGDIKSARLLFDQVDQRDTVSWNSMIDGYTKCGEIEMAYEIFNHMPE 212

Query: 71  RNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVV---------GLIRNGELN 121
           RN++SWT+MI G   AG+  EA  LF  M    +   N  +V         G++  G+  
Sbjct: 213 RNIISWTSMISGCVGAGKPKEALNLFHRMQTAGIKLDNVALVSTLQACADLGVLDQGKWI 272

Query: 122 EARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGE 181
            A    + + I  ++    +I  Y +C  + EAI +F +MEE+ V  WT+MISGY   G 
Sbjct: 273 HAYIKKHEIEIDPILGC-VLIDMYAKCGDLEEAIEVFRKMEEKGVSVWTAMISGYAIHGR 331

Query: 182 VEEGYCLFRRMP----RKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQS 237
             E    F +M       N +++T ++   +  G   E+ LLF  M+ I  +G   +++ 
Sbjct: 332 GREALEWFMKMQTAGVEPNQMTFTGILTACSHAGLVHEAKLLFESMERI--HGFKPSIEH 389

Query: 238 CNSMINGYIRFGRLEEAQNLFDTVPVRDEIS-WTSM-----IDGYLSVGQ 281
              M++   R G L+EA+ L + +PV+   + W ++     I G L +G+
Sbjct: 390 YGCMVDLLGRAGLLKEAEELIENMPVKPNAAIWGALLNACHIHGNLELGK 439



 Score = 88.6 bits (218), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 71/305 (23%), Positives = 133/305 (43%), Gaps = 37/305 (12%)

Query: 235 VQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPD 294
           +Q C++M       G++ +   + D +P    +++ +  +     G ++ A  +F  +  
Sbjct: 25  LQRCSNMEELRQIHGQMLKTGLILDEIPASKLLAFCASPNS----GSLAYARTVFDRIFR 80

Query: 295 RDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQI 354
            +   W  MI G   ++   EA  L+  M  H VP    TF  L  A  + +  +  +QI
Sbjct: 81  PNTFMWNTMIRGYSNSKEPEEALLLYHHMLYHSVPHNAYTFPFLLKACSSMSASEETQQI 140

Query: 355 HCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSH---- 410
           H  ++K    S++   N L+++Y+K G I +A  +F  +  RD VSWNSM+ G++     
Sbjct: 141 HAHIIKMGFGSEIYTTNSLLNVYSKSGDIKSARLLFDQVDQRDTVSWNSMIDGYTKCGEI 200

Query: 411 ---------------------------HGLANETLKVFESMLESGTHPNSVTFLGILSAC 443
                                       G   E L +F  M  +G   ++V  +  L AC
Sbjct: 201 EMAYEIFNHMPERNIISWTSMISGCVGAGKPKEALNLFHRMQTAGIKLDNVALVSTLQAC 260

Query: 444 SHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRI 503
           +  G++ +G +  +A    ++I+  P     +I++  + G ++EA E V R   E    +
Sbjct: 261 ADLGVLDQG-KWIHAYIKKHEIEIDPILGCVLIDMYAKCGDLEEAIE-VFRKMEEKGVSV 318

Query: 504 WGALL 508
           W A++
Sbjct: 319 WTAMI 323


>gi|449453744|ref|XP_004144616.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
 gi|449511814|ref|XP_004164061.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 681

 Score =  296 bits (757), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 173/553 (31%), Positives = 291/553 (52%), Gaps = 52/553 (9%)

Query: 58  LSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEM-----PERNVVSWNSMVV 112
           L  A  LF+ + E  +VSW  +I    +  R  +A  LF ++     P+   +    ++ 
Sbjct: 65  LQYAHSLFDWIQEPTLVSWNLLIKCYIENQRSNDAIALFCKLLCDFVPDSFTLP--CVLK 122

Query: 113 GLIRNGELNEARKVFNSMPIK-----NVISWNAMIAGYVECCMMGEAIVLFEEMEERNVV 167
           G  R G L E +++ + + +K     +    +++++ Y +C  +     +F+ ME+++VV
Sbjct: 123 GCARLGALQEGKQI-HGLVLKIGFGVDKFVLSSLVSMYSKCGEIELCRKVFDRMEDKDVV 181

Query: 168 TWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGIC 227
           +W S+I GY R GE+E    +F  MP K+  SWT +I G +                   
Sbjct: 182 SWNSLIDGYARCGEIELALEMFEEMPEKDSFSWTILIDGLS------------------- 222

Query: 228 DNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYY 287
                              + G+LE A+++FD +P+R+ +SW +MI+GY+  G  + A  
Sbjct: 223 -------------------KSGKLEAARDVFDRMPIRNSVSWNAMINGYMKAGDSNTAKE 263

Query: 288 LFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATAN 347
           LF  MP+R  V W +MI+G  +N+ F +A  LF  M    + P   T      AA    +
Sbjct: 264 LFDQMPERSLVTWNSMITGYERNKQFTKALKLFEVMLREDISPNYTTILGAVSAASGMVS 323

Query: 348 IDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMG 407
           +  GR +H  ++K+  ++D +L   LI MY+KCG + +A  +F ++  + L  W S+++G
Sbjct: 324 LGTGRWVHSYIVKSGFKTDGVLGTLLIEMYSKCGSVKSALRVFRSIPKKKLGHWTSVIVG 383

Query: 408 FSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQP 467
              HGL  +TL++F+ M  +G  P+++TF+G+L+ACSHAG        F  M   Y I+P
Sbjct: 384 LGMHGLVEQTLELFDEMCRTGLKPHAITFIGVLNACSHAGFAEDAHRYFKMMTYDYGIKP 443

Query: 468 GPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKR 527
             EHY  +I++L RAG ++EA++ + R+P + +  IW +LL       GN  + E+AA+ 
Sbjct: 444 SIEHYGCLIDVLCRAGHLEEAKDTIERMPIKANKVIWTSLLSG-SRKHGNIRMGEYAAQH 502

Query: 528 LLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLS 587
           L++L P     +V+L N+YAA+G   +  ++R  M  KG++K PGCS +   G I  F+ 
Sbjct: 503 LIDLAPDTTGCYVILSNMYAAAGLWEKVRQVREMMKKKGMKKDPGCSSIEHQGSIHEFIV 562

Query: 588 GDKIPAQVAEILL 600
           GDK   Q  EI +
Sbjct: 563 GDKSHPQTEEIYI 575



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 109/371 (29%), Positives = 186/371 (50%), Gaps = 36/371 (9%)

Query: 46  NAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVV 105
           ++++S + + G +   R++F+ M +++VVSW ++I G A  G +  A ++FEEMPE++  
Sbjct: 153 SSLVSMYSKCGEIELCRKVFDRMEDKDVVSWNSLIDGYARCGEIELALEMFEEMPEKDSF 212

Query: 106 SWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERN 165
           SW  ++ GL ++G+L  AR VF+ MPI+N +SWNAMI GY++      A  LF++M ER+
Sbjct: 213 SWTILIDGLSKSGKLEAARDVFDRMPIRNSVSWNAMINGYMKAGDSNTAKELFDQMPERS 272

Query: 166 VVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVV-SWTAMIGGFAWNGFHKESLLLFIEMK 224
           +VTW SMI+GY R  +  +   LF  M R+++  ++T ++G                   
Sbjct: 273 LVTWNSMITGYERNKQFTKALKLFEVMLREDISPNYTTILGA------------------ 314

Query: 225 GICDNGNNCNVQSCNSMIN-GYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVS 283
                     V + + M++ G  R+      ++ F T    D +  T +I+ Y   G V 
Sbjct: 315 ----------VSAASGMVSLGTGRWVHSYIVKSGFKT----DGVLGTLLIEMYSKCGSVK 360

Query: 284 NAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATF-SVLFGAA 342
           +A  +F ++P +    WT++I GL  + L  +   LF EM   G+ P   TF  VL   +
Sbjct: 361 SALRVFRSIPKKKLGHWTSVIVGLGMHGLVEQTLELFDEMCRTGLKPHAITFIGVLNACS 420

Query: 343 GATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNM-VSRDLVSW 401
            A    D  R    +      +  +    CLI +  + G ++ A +    M +  + V W
Sbjct: 421 HAGFAEDAHRYFKMMTYDYGIKPSIEHYGCLIDVLCRAGHLEEAKDTIERMPIKANKVIW 480

Query: 402 NSMVMGFSHHG 412
            S++ G   HG
Sbjct: 481 TSLLSGSRKHG 491



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 98/338 (28%), Positives = 171/338 (50%), Gaps = 48/338 (14%)

Query: 14  LTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNV 73
           L+S ++ YSK G I+  + +F  M  ++VVS+N+++ G+ + G +  A  +FEEMPE++ 
Sbjct: 152 LSSLVSMYSKCGEIELCRKVFDRMEDKDVVSWNSLIDGYARCGEIELALEMFEEMPEKDS 211

Query: 74  VSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIK 133
            SWT +I GL+ +G++  AR +F+ MP RN VSWN+M+ G ++ G+ N A+++F+ MP +
Sbjct: 212 FSWTILIDGLSKSGKLEAARDVFDRMPIRNSVSWNAMINGYMKAGDSNTAKELFDQMPER 271

Query: 134 NVISWNAMIAGYVECCMMGEAIVLFEEMEERNV--------------------------- 166
           ++++WN+MI GY       +A+ LFE M   ++                           
Sbjct: 272 SLVTWNSMITGYERNKQFTKALKLFEVMLREDISPNYTTILGAVSAASGMVSLGTGRWVH 331

Query: 167 ------------VTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHK 214
                       V  T +I  Y + G V+    +FR +P+K +  WT++I G   +G  +
Sbjct: 332 SYIVKSGFKTDGVLGTLLIEMYSKCGSVKSALRVFRSIPKKKLGHWTSVIVGLGMHGLVE 391

Query: 215 ESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVP----VRDEIS-W 269
           ++L LF EM   C  G   +  +   ++N     G  E+A   F  +     ++  I  +
Sbjct: 392 QTLELFDEM---CRTGLKPHAITFIGVLNACSHAGFAEDAHRYFKMMTYDYGIKPSIEHY 448

Query: 270 TSMIDGYLSVGQVSNAYYLFHNMPDR-DAVAWTAMISG 306
             +ID     G +  A      MP + + V WT+++SG
Sbjct: 449 GCLIDVLCRAGHLEEAKDTIERMPIKANKVIWTSLLSG 486



 Score = 40.8 bits (94), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 32/127 (25%), Positives = 59/127 (46%), Gaps = 10/127 (7%)

Query: 4   RNHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQR----NVVSYNAMLSGFLQNGRLS 59
           R+ PK  + H TS I      G +++   LF  M +     + +++  +L+     G   
Sbjct: 367 RSIPKKKLGHWTSVIVGLGMHGLVEQTLELFDEMCRTGLKPHAITFIGVLNACSHAGFAE 426

Query: 60  EARRLFEEMP-----ERNVVSWTAMICGLADAGRVCEARKLFEEMP-ERNVVSWNSMVVG 113
           +A R F+ M      + ++  +  +I  L  AG + EA+   E MP + N V W S++ G
Sbjct: 427 DAHRYFKMMTYDYGIKPSIEHYGCLIDVLCRAGHLEEAKDTIERMPIKANKVIWTSLLSG 486

Query: 114 LIRNGEL 120
             ++G +
Sbjct: 487 SRKHGNI 493


>gi|242034539|ref|XP_002464664.1| hypothetical protein SORBIDRAFT_01g023020 [Sorghum bicolor]
 gi|241918518|gb|EER91662.1| hypothetical protein SORBIDRAFT_01g023020 [Sorghum bicolor]
          Length = 650

 Score =  296 bits (757), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 160/442 (36%), Positives = 255/442 (57%), Gaps = 14/442 (3%)

Query: 157 LFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMP------RKNVVSWTAMIGGFAWN 210
           LF+E   R+VV+W ++I GY R+G   E   LF R+       R + V+    + G A  
Sbjct: 178 LFDESPARDVVSWNTLIGGYVRSGLPREALELFWRLVEDGKAVRPDEVTMIGAVSGCAQM 237

Query: 211 GFHK--ESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEIS 268
           G  +  + L  F++ KG+      C V+  N++++ Y++ G LE A+++F+ +  +  +S
Sbjct: 238 GDLELGKRLHEFVDSKGV-----RCTVRLMNAVMDMYVKCGSLELAKSVFERIDNKTVVS 292

Query: 269 WTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGV 328
           WT+MI G+  +G + +A  LF  MP+RD   W A+++G VQN+   EA  LF EM+   V
Sbjct: 293 WTTMIVGHARLGMMEDARMLFDEMPERDVFPWNALMAGYVQNKQGKEAIALFHEMQESKV 352

Query: 329 PPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYN 388
            P   T   L  A      +++G  +H  + + +    + L   L+ MYAKCG I  A  
Sbjct: 353 DPNEITMVNLLSACSQLGALEMGMWVHHYIDRHQLYLSVALGTSLVDMYAKCGNIKKAIC 412

Query: 389 IFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGL 448
           IF  +  ++ ++W +M+ G ++HG A+E ++ F+ M++ G  P+ +TF+G+LSAC HAGL
Sbjct: 413 IFKEIPDKNALTWTAMICGLANHGHADEAIEYFQRMIDLGLQPDEITFIGVLSACCHAGL 472

Query: 449 VSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALL 508
           V  G + F+ M + Y ++   +HY  MI+LLGRAG + EAE+ V  +P +PD  +WGAL 
Sbjct: 473 VKEGRQFFSLMHEKYHLERKMKHYSCMIDLLGRAGHLDEAEQLVNTMPMDPDAVVWGALF 532

Query: 509 GACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVR 568
            AC    GN  + E AA +L+ELDP ++  +V+L N+YA +    +  K+R+ M   GV 
Sbjct: 533 FACRM-HGNITLGEKAAMKLVELDPSDSGIYVLLANMYAEANMRKKADKVRVMMRHLGVE 591

Query: 569 KVPGCSWLMRNGGIQMFLSGDK 590
           KVPGCS +  NG +  F+  DK
Sbjct: 592 KVPGCSCIELNGVVHEFIVKDK 613



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 112/393 (28%), Positives = 190/393 (48%), Gaps = 29/393 (7%)

Query: 41  NVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMP 100
           +V   NA +  +  +G +  ARRLF+E P R+VVSW  +I G   +G   EA +LF  + 
Sbjct: 155 DVFVVNAGVHFWSVSGSMVLARRLFDESPARDVVSWNTLIGGYVRSGLPREALELFWRLV 214

Query: 101 ER------NVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVIS----WNAMIAGYVECCM 150
           E       + V+    V G  + G+L   +++   +  K V       NA++  YV+C  
Sbjct: 215 EDGKAVRPDEVTMIGAVSGCAQMGDLELGKRLHEFVDSKGVRCTVRLMNAVMDMYVKCGS 274

Query: 151 MGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWN 210
           +  A  +FE ++ + VV+WT+MI G+ R G +E+   LF  MP ++V  W A++ G+  N
Sbjct: 275 LELAKSVFERIDNKTVVSWTTMIVGHARLGMMEDARMLFDEMPERDVFPWNALMAGYVQN 334

Query: 211 GFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLE---------EAQNLFDTV 261
              KE++ LF EM+   ++  + N  +  ++++   + G LE         +   L+ +V
Sbjct: 335 KQGKEAIALFHEMQ---ESKVDPNEITMVNLLSACSQLGALEMGMWVHHYIDRHQLYLSV 391

Query: 262 PVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFM 321
            +      TS++D Y   G +  A  +F  +PD++A+ WTAMI GL  +    EA   F 
Sbjct: 392 AL-----GTSLVDMYAKCGNIKKAICIFKEIPDKNALTWTAMICGLANHGHADEAIEYFQ 446

Query: 322 EMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLM-KTESESDLILENCLISMYAKC 380
            M   G+ P   TF  +  A      +  GRQ   ++  K   E  +   +C+I +  + 
Sbjct: 447 RMIDLGLQPDEITFIGVLSACCHAGLVKEGRQFFSLMHEKYHLERKMKHYSCMIDLLGRA 506

Query: 381 GVIDNAYNIFSNM-VSRDLVSWNSMVMGFSHHG 412
           G +D A  + + M +  D V W ++      HG
Sbjct: 507 GHLDEAEQLVNTMPMDPDAVVWGALFFACRMHG 539



 Score =  125 bits (313), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 97/369 (26%), Positives = 160/369 (43%), Gaps = 89/369 (24%)

Query: 21  YSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPER------NVV 74
           +S  G +  A+ LF   P R+VVS+N ++ G++++G   EA  LF  + E       + V
Sbjct: 166 WSVSGSMVLARRLFDESPARDVVSWNTLIGGYVRSGLPREALELFWRLVEDGKAVRPDEV 225

Query: 75  SWTAMICGLADAG------RVCE-----------------------------ARKLFEEM 99
           +    + G A  G      R+ E                             A+ +FE +
Sbjct: 226 TMIGAVSGCAQMGDLELGKRLHEFVDSKGVRCTVRLMNAVMDMYVKCGSLELAKSVFERI 285

Query: 100 PERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFE 159
             + VVSW +M+VG  R G + +AR +F+ MP ++V  WNA++AGYV+     EAI LF 
Sbjct: 286 DNKTVVSWTTMIVGHARLGMMEDARMLFDEMPERDVFPWNALMAGYVQNKQGKEAIALFH 345

Query: 160 EMEER---------------------------------------NVVTWTSMISGYCRAG 180
           EM+E                                        +V   TS++  Y + G
Sbjct: 346 EMQESKVDPNEITMVNLLSACSQLGALEMGMWVHHYIDRHQLYLSVALGTSLVDMYAKCG 405

Query: 181 EVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNS 240
            +++  C+F+ +P KN ++WTAMI G A +G   E++  F  M    D G   +  +   
Sbjct: 406 NIKKAICIFKEIPDKNALTWTAMICGLANHGHADEAIEYFQRM---IDLGLQPDEITFIG 462

Query: 241 MINGYIRFGRLEEAQNLFDTVPVRDEIS-----WTSMIDGYLSVGQVSNAYYLFHNMP-D 294
           +++     G ++E +  F  +  +  +      ++ MID     G +  A  L + MP D
Sbjct: 463 VLSACCHAGLVKEGRQFFSLMHEKYHLERKMKHYSCMIDLLGRAGHLDEAEQLVNTMPMD 522

Query: 295 RDAVAWTAM 303
            DAV W A+
Sbjct: 523 PDAVVWGAL 531



 Score = 89.0 bits (219), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 72/276 (26%), Positives = 126/276 (45%), Gaps = 48/276 (17%)

Query: 11  VVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPE 70
           VV  T+ I  +++ G +++A+ LF  MP+R+V  +NA+++G++QN +  EA  LF EM E
Sbjct: 290 VVSWTTMIVGHARLGMMEDARMLFDEMPERDVFPWNALMAGYVQNKQGKEAIALFHEMQE 349

Query: 71  RNV----VSWTAMICGLADAGRVCEARKLFEEMPERN-----VVSWNSMVVGLIRNGELN 121
             V    ++   ++   +  G + E         +R+     V    S+V    + G + 
Sbjct: 350 SKVDPNEITMVNLLSACSQLGAL-EMGMWVHHYIDRHQLYLSVALGTSLVDMYAKCGNIK 408

Query: 122 EARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNV----VTWTSMISGYC 177
           +A  +F  +P KN ++W AMI G        EAI  F+ M +  +    +T+  ++S  C
Sbjct: 409 KAICIFKEIPDKNALTWTAMICGLANHGHADEAIEYFQRMIDLGLQPDEITFIGVLSACC 468

Query: 178 RAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQS 237
            AG V+EG   F  M  K                +H E                   ++ 
Sbjct: 469 HAGLVKEGRQFFSLMHEK----------------YHLER-----------------KMKH 495

Query: 238 CNSMINGYIRFGRLEEAQNLFDTVPVR-DEISWTSM 272
            + MI+   R G L+EA+ L +T+P+  D + W ++
Sbjct: 496 YSCMIDLLGRAGHLDEAEQLVNTMPMDPDAVVWGAL 531



 Score = 88.6 bits (218), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 72/310 (23%), Positives = 140/310 (45%), Gaps = 17/310 (5%)

Query: 230 GNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLF 289
           G + +V   N+ ++ +   G +  A+ LFD  P RD +SW ++I GY+  G    A  LF
Sbjct: 151 GFSADVFVVNAGVHFWSVSGSMVLARRLFDESPARDVVSWNTLIGGYVRSGLPREALELF 210

Query: 290 HNMPDR------DAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAG 343
             + +       D V     +SG  Q         L   + + GV       + +     
Sbjct: 211 WRLVEDGKAVRPDEVTMIGAVSGCAQMGDLELGKRLHEFVDSKGVRCTVRLMNAVMDMYV 270

Query: 344 ATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNS 403
              +++L + +     +      ++    +I  +A+ G++++A  +F  M  RD+  WN+
Sbjct: 271 KCGSLELAKSV----FERIDNKTVVSWTTMIVGHARLGMMEDARMLFDEMPERDVFPWNA 326

Query: 404 MVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRG-WELFNAMFDV 462
           ++ G+  +    E + +F  M ES   PN +T + +LSACS  G +  G W   +   D 
Sbjct: 327 LMAGYVQNKQGKEAIALFHEMQESKVDPNEITMVNLLSACSQLGALEMGMW--VHHYIDR 384

Query: 463 YKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFC-EGNAEIA 521
           +++        S++++  + G IK+A      +P + +   W A++  CG    G+A+ A
Sbjct: 385 HQLYLSVALGTSLVDMYAKCGNIKKAICIFKEIP-DKNALTWTAMI--CGLANHGHADEA 441

Query: 522 EHAAKRLLEL 531
               +R+++L
Sbjct: 442 IEYFQRMIDL 451



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/128 (27%), Positives = 61/128 (47%), Gaps = 2/128 (1%)

Query: 330 PLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNI 389
           P + TF  L  A         G  +   + K    +D+ + N  +  ++  G +  A  +
Sbjct: 119 PDHLTFPFLLKACARLQYRPYGAAVLGHVQKLGFSADVFVVNAGVHFWSVSGSMVLARRL 178

Query: 390 FSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESG--THPNSVTFLGILSACSHAG 447
           F    +RD+VSWN+++ G+   GL  E L++F  ++E G    P+ VT +G +S C+  G
Sbjct: 179 FDESPARDVVSWNTLIGGYVRSGLPREALELFWRLVEDGKAVRPDEVTMIGAVSGCAQMG 238

Query: 448 LVSRGWEL 455
            +  G  L
Sbjct: 239 DLELGKRL 246


>gi|449522252|ref|XP_004168141.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g37310-like [Cucumis sativus]
          Length = 635

 Score =  296 bits (757), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 170/556 (30%), Positives = 291/556 (52%), Gaps = 19/556 (3%)

Query: 46  NAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEM------ 99
           + ++S + ++G + +A  +F ++P +N+ SW A+           +  KLF  +      
Sbjct: 42  SKLISFYSKSGSIRDAYNVFGKIPRKNIFSWNALFISYTLHNMHTDLLKLFSSLVNSNST 101

Query: 100 ---PERNVVSWN-SMVVGLIRNGELNEARKVFNSMPIK----NVISWNAMIAGYVECCMM 151
              P+R  V+ +   +  L  N  L  A++V + +  +    ++   NA+I  Y  C  +
Sbjct: 102 DVKPDRFTVTCSLKALASLFSNSGL--AKEVHSFILRRGLEYDIFVVNALITFYSRCDEL 159

Query: 152 GEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNG 211
             A ++F+ M ER+ V+W +M++GY + G  EE   LFR M     V   A+        
Sbjct: 160 VLARIMFDRMPERDTVSWNAMLAGYSQGGSYEECKELFRVMLSSVEVKPNALTAVSVLQA 219

Query: 212 FHKESLLLF-IEMKGICDNGN-NCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISW 269
             + + L F IE+    +      +V   N++I  Y + G L+ A+ LF+ +P +D I++
Sbjct: 220 CAQSNDLTFGIEVHRFVNESQIKMDVSLWNAVIGLYAKCGILDYARELFEEMPEKDGITY 279

Query: 270 TSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVP 329
            SMI GY+  G V+ A  LF          W A+ISGLVQN     A  +F  M++HG  
Sbjct: 280 CSMISGYMVHGFVNQAMDLFREQERPRLPTWNAVISGLVQNNRQEGAVDIFRAMQSHGCR 339

Query: 330 PLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNI 389
           P   T + +       + +  G++IH   ++   + ++ +   +I  YAKCG +  A  +
Sbjct: 340 PNTVTLASILPVFSHFSTLKGGKEIHGYAIRNTYDRNIYVATAIIDSYAKCGYLHGAQLV 399

Query: 390 FSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLV 449
           F  +  R L++W S++  ++ HG AN  L +F  ML +G  P+ VTF  +L+AC+H+G +
Sbjct: 400 FDQIKGRSLIAWTSIISAYAVHGDANVALSLFYEMLTNGIQPDQVTFTSVLAACAHSGEL 459

Query: 450 SRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLG 509
              W++FN +   Y IQP  EHY  M+ +L RAGK+ +A EF+ ++P EP  ++WGALL 
Sbjct: 460 DEAWKIFNVLLPEYGIQPLVEHYACMVGVLSRAGKLSDAVEFISKMPLEPTAKVWGALLN 519

Query: 510 ACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRK 569
                 G+ E+ ++   RL E++P N   +V++ N+Y+ SGR  +   +R  M    ++K
Sbjct: 520 GASVA-GDVELGKYVFDRLFEIEPENTGNYVIMANLYSQSGRWKDADTIRDLMKEVRLKK 578

Query: 570 VPGCSWLMRNGGIQMF 585
           +PG SW+  +GG+Q F
Sbjct: 579 IPGNSWIETSGGMQRF 594



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 120/487 (24%), Positives = 212/487 (43%), Gaps = 86/487 (17%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEM-----PERN 72
           IT YS+   +  A+ +F  MP+R+ VS+NAML+G+ Q G   E + LF  M      + N
Sbjct: 150 ITFYSRCDELVLARIMFDRMPERDTVSWNAMLAGYSQGGSYEECKELFRVMLSSVEVKPN 209

Query: 73  VVSWTAMICGLADAGRVCEA----RKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFN 128
            ++  +++   A +  +       R + E   + +V  WN+++    + G L+ AR++F 
Sbjct: 210 ALTAVSVLQACAQSNDLTFGIEVHRFVNESQIKMDVSLWNAVIGLYAKCGILDYARELFE 269

Query: 129 SMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCL 188
            MP K+ I++ +MI+GY+    + +A+ LF E E   + TW ++ISG  +    E    +
Sbjct: 270 EMPEKDGITYCSMISGYMVHGFVNQAMDLFREQERPRLPTWNAVISGLVQNNRQEGAVDI 329

Query: 189 FRRMP----RKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGIC-DNGNNCNVQSCNSMIN 243
           FR M     R N V+  +++  F+    H  +L    E+ G    N  + N+    ++I+
Sbjct: 330 FRAMQSHGCRPNTVTLASILPVFS----HFSTLKGGKEIHGYAIRNTYDRNIYVATAIID 385

Query: 244 GYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAM 303
            Y + G L  AQ +FD +  R  I+WTS+I  Y   G  + A  LF+             
Sbjct: 386 SYAKCGYLHGAQLVFDQIKGRSLIAWTSIISAYAVHGDANVALSLFY------------- 432

Query: 304 ISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTES 363
                             EM  +G+ P   TF+ +  A   +  +D   +I  VL+    
Sbjct: 433 ------------------EMLTNGIQPDQVTFTSVLAACAHSGELDEAWKIFNVLLPEYG 474

Query: 364 ESDLILE-NCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFE 422
              L+    C++ + ++ G + +A    S M                             
Sbjct: 475 IQPLVEHYACMVGVLSRAGKLSDAVEFISKM----------------------------- 505

Query: 423 SMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRA 482
                   P +  +  +L+  S AG V  G  +F+ +F++     G  +YV M NL  ++
Sbjct: 506 -----PLEPTAKVWGALLNGASVAGDVELGKYVFDRLFEIEPENTG--NYVIMANLYSQS 558

Query: 483 GKIKEAE 489
           G+ K+A+
Sbjct: 559 GRWKDAD 565



 Score = 98.6 bits (244), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 88/354 (24%), Positives = 160/354 (45%), Gaps = 57/354 (16%)

Query: 7   PKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAM-----LSGFLQNGRLS-- 59
           P+   V   + +  YS+ G  +E K LF++M     V  NA+     L    Q+  L+  
Sbjct: 170 PERDTVSWNAMLAGYSQGGSYEECKELFRVMLSSVEVKPNALTAVSVLQACAQSNDLTFG 229

Query: 60  -EARRLFEEMPERNVVS-WTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRN 117
            E  R   E   +  VS W A+I   A  G +  AR+LFEEMPE++ +++ SM+ G + +
Sbjct: 230 IEVHRFVNESQIKMDVSLWNAVIGLYAKCGILDYARELFEEMPEKDGITYCSMISGYMVH 289

Query: 118 GELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEME--------------- 162
           G +N+A  +F       + +WNA+I+G V+      A+ +F  M+               
Sbjct: 290 GFVNQAMDLFREQERPRLPTWNAVISGLVQNNRQEGAVDIFRAMQSHGCRPNTVTLASIL 349

Query: 163 ------------------------ERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVV 198
                                   +RN+   T++I  Y + G +     +F ++  ++++
Sbjct: 350 PVFSHFSTLKGGKEIHGYAIRNTYDRNIYVATAIIDSYAKCGYLHGAQLVFDQIKGRSLI 409

Query: 199 SWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLF 258
           +WT++I  +A +G    +L LF EM     NG   +  +  S++      G L+EA  +F
Sbjct: 410 AWTSIISAYAVHGDANVALSLFYEM---LTNGIQPDQVTFTSVLAACAHSGELDEAWKIF 466

Query: 259 DTV----PVRDEISWTSMIDGYLS-VGQVSNAYYLFHNMP-DRDAVAWTAMISG 306
           + +     ++  +   + + G LS  G++S+A      MP +  A  W A+++G
Sbjct: 467 NVLLPEYGIQPLVEHYACMVGVLSRAGKLSDAVEFISKMPLEPTAKVWGALLNG 520



 Score = 55.8 bits (133), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 50/183 (27%), Positives = 96/183 (52%), Gaps = 21/183 (11%)

Query: 15  TSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNV- 73
           T+ I  Y+K G++  A+ +F  +  R+++++ +++S +  +G  + A  LF EM    + 
Sbjct: 381 TAIIDSYAKCGYLHGAQLVFDQIKGRSLIAWTSIISAYAVHGDANVALSLFYEMLTNGIQ 440

Query: 74  ---VSWTAMICGLADAGRVCEARKLFEE-MPERN----VVSWNSMVVGLIRNGELNEARK 125
              V++T+++   A +G + EA K+F   +PE      V  +  MV  L R G+L++A +
Sbjct: 441 PDQVTFTSVLAACAHSGELDEAWKIFNVLLPEYGIQPLVEHYACMVGVLSRAGKLSDAVE 500

Query: 126 VFNSMPIKNVIS-WNAM-----IAGYVECCMMGEAIV--LFEEMEERNVVTWTSMISGYC 177
             + MP++     W A+     +AG VE   +G+ +   LF E+E  N   +  M + Y 
Sbjct: 501 FISKMPLEPTAKVWGALLNGASVAGDVE---LGKYVFDRLF-EIEPENTGNYVIMANLYS 556

Query: 178 RAG 180
           ++G
Sbjct: 557 QSG 559


>gi|15223802|ref|NP_173449.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806503|sp|Q9LNU6.2|PPR53_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g20230
 gi|332191832|gb|AEE29953.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 760

 Score =  296 bits (757), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 180/592 (30%), Positives = 304/592 (51%), Gaps = 55/592 (9%)

Query: 58  LSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRN 117
            ++A  + + +P+  + S++++I  L  A    ++  +F  M    ++  + ++  L + 
Sbjct: 66  FNDADLVLQSIPDPTIYSFSSLIYALTKAKLFTQSIGVFSRMFSHGLIPDSHVLPNLFKV 125

Query: 118 GELNEARKVFNSMPIKNVIS---WNAMIAG-----YVECCMMGEAIVLFEEMEERNVVTW 169
                A KV   +   + +S    +A + G     Y+ C  MG+A  +F+ M +++VVT 
Sbjct: 126 CAELSAFKVGKQIHCVSCVSGLDMDAFVQGSMFHMYMRCGRMGDARKVFDRMSDKDVVTC 185

Query: 170 TSMISGYCRAGEVEEGYCLFRRMPRK----NVVSWTAMIGGFAWNGFHKESLLLF--IEM 223
           ++++  Y R G +EE   +   M       N+VSW  ++ GF  +G+HKE++++F  I  
Sbjct: 186 SALLCAYARKGCLEEVVRILSEMESSGIEANIVSWNGILSGFNRSGYHKEAVVMFQKIHH 245

Query: 224 KGICDN---------------------------------GNNCNVQSCNSMINGYIRFGR 250
            G C +                                  + C +   ++MI+ Y + G 
Sbjct: 246 LGFCPDQVTVSSVLPSVGDSEMLNMGRLIHGYVIKQGLLKDKCVI---SAMIDMYGKSGH 302

Query: 251 LEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDR----DAVAWTAMISG 306
           +    +LF+   + +     + I G    G V  A  +F    ++    + V+WT++I+G
Sbjct: 303 VYGIISLFNQFEMMEAGVCNAYITGLSRNGLVDKALEMFELFKEQTMELNVVSWTSIIAG 362

Query: 307 LVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESD 366
             QN   +EA  LF EM+  GV P + T   +  A G  A +  GR  H   ++     +
Sbjct: 363 CAQNGKDIEALELFREMQVAGVKPNHVTIPSMLPACGNIAALGHGRSTHGFAVRVHLLDN 422

Query: 367 LILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLE 426
           + + + LI MYAKCG I+ +  +F+ M +++LV WNS++ GFS HG A E + +FES++ 
Sbjct: 423 VHVGSALIDMYAKCGRINLSQIVFNMMPTKNLVCWNSLMNGFSMHGKAKEVMSIFESLMR 482

Query: 427 SGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIK 486
           +   P+ ++F  +LSAC   GL   GW+ F  M + Y I+P  EHY  M+NLLGRAGK++
Sbjct: 483 TRLKPDFISFTSLLSACGQVGLTDEGWKYFKMMSEEYGIKPRLEHYSCMVNLLGRAGKLQ 542

Query: 487 EAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIY 546
           EA + +  +PFEPD  +WGALL +C   + N ++AE AA++L  L+P N   +V+L NIY
Sbjct: 543 EAYDLIKEMPFEPDSCVWGALLNSCRL-QNNVDLAEIAAEKLFHLEPENPGTYVLLSNIY 601

Query: 547 AASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
           AA G   E   +R  M   G++K PGCSW+     +   L+GDK   Q+ +I
Sbjct: 602 AAKGMWTEVDSIRNKMESLGLKKNPGCSWIQVKNRVYTLLAGDKSHPQIDQI 653



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 98/410 (23%), Positives = 181/410 (44%), Gaps = 52/410 (12%)

Query: 47  AMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMP----ER 102
           +M   +++ GR+ +AR++F+ M +++VV+ +A++C  A  G + E  ++  EM     E 
Sbjct: 156 SMFHMYMRCGRMGDARKVFDRMSDKDVVTCSALLCAYARKGCLEEVVRILSEMESSGIEA 215

Query: 103 NVVSWNSMVVGLIRNGELNEARKVFN-------------------SMPIKNVISWNAMIA 143
           N+VSWN ++ G  R+G   EA  +F                    S+    +++   +I 
Sbjct: 216 NIVSWNGILSGFNRSGYHKEAVVMFQKIHHLGFCPDQVTVSSVLPSVGDSEMLNMGRLIH 275

Query: 144 GYV--------ECC------MMGEA------IVLFEEMEERNVVTWTSMISGYCRAGEVE 183
           GYV        +C       M G++      I LF + E        + I+G  R G V+
Sbjct: 276 GYVIKQGLLKDKCVISAMIDMYGKSGHVYGIISLFNQFEMMEAGVCNAYITGLSRNGLVD 335

Query: 184 EGYCLFRRMPRK----NVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCN 239
           +   +F     +    NVVSWT++I G A NG   E+L LF EM+      N+  + S  
Sbjct: 336 KALEMFELFKEQTMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNHVTIPSML 395

Query: 240 SMINGYIRFGRLEEAQNLFDTVPVRDEIS-WTSMIDGYLSVGQVSNAYYLFHNMPDRDAV 298
                    G           V + D +   +++ID Y   G+++ +  +F+ MP ++ V
Sbjct: 396 PACGNIAALGHGRSTHGFAVRVHLLDNVHVGSALIDMYAKCGRINLSQIVFNMMPTKNLV 455

Query: 299 AWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVL 358
            W ++++G   +    E   +F  +    + P   +F+ L  A G     D G + +  +
Sbjct: 456 CWNSLMNGFSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSACGQVGLTDEGWK-YFKM 514

Query: 359 MKTESESDLILEN--CLISMYAKCGVIDNAYNIFSNM-VSRDLVSWNSMV 405
           M  E      LE+  C++++  + G +  AY++   M    D   W +++
Sbjct: 515 MSEEYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKEMPFEPDSCVWGALL 564



 Score = 95.5 bits (236), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 78/385 (20%), Positives = 174/385 (45%), Gaps = 15/385 (3%)

Query: 141 MIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSW 200
           +IA Y       +A ++ + + +  + +++S+I    +A    +   +F RM    ++  
Sbjct: 56  LIASYSNYNCFNDADLVLQSIPDPTIYSFSSLIYALTKAKLFTQSIGVFSRMFSHGLIPD 115

Query: 201 TAMIGGFAWNGFHKESLLLFIEMKGI-CDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFD 259
           + ++           +  +  ++  + C +G + +     SM + Y+R GR+ +A+ +FD
Sbjct: 116 SHVLPNLFKVCAELSAFKVGKQIHCVSCVSGLDMDAFVQGSMFHMYMRCGRMGDARKVFD 175

Query: 260 TVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMP----DRDAVAWTAMISGLVQNELFVE 315
            +  +D ++ ++++  Y   G +     +   M     + + V+W  ++SG  ++    E
Sbjct: 176 RMSDKDVVTCSALLCAYARKGCLEEVVRILSEMESSGIEANIVSWNGILSGFNRSGYHKE 235

Query: 316 ATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLIS 375
           A  +F ++   G  P   T S +  + G +  +++GR IH  ++K     D  + + +I 
Sbjct: 236 AVVMFQKIHHLGFCPDQVTVSSVLPSVGDSEMLNMGRLIHGYVIKQGLLKDKCVISAMID 295

Query: 376 MYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVT 435
           MY K G +    ++F+     +    N+ + G S +GL ++ L++FE   E     N V+
Sbjct: 296 MYGKSGHVYGIISLFNQFEMMEAGVCNAYITGLSRNGLVDKALEMFELFKEQTMELNVVS 355

Query: 436 FLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKI------KEAE 489
           +  I++ C+  G      ELF  M  V  ++P   ++V++ ++L   G I      +   
Sbjct: 356 WTSIIAGCAQNGKDIEALELFREM-QVAGVKP---NHVTIPSMLPACGNIAALGHGRSTH 411

Query: 490 EFVLRLPFEPDHRIWGALLGACGFC 514
            F +R+    +  +  AL+     C
Sbjct: 412 GFAVRVHLLDNVHVGSALIDMYAKC 436



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 90/366 (24%), Positives = 177/366 (48%), Gaps = 41/366 (11%)

Query: 11  VVHLTSSITKYSKRGFIDEAKALFQLMP----QRNVVSYNAMLSGFLQNGRLSEARRLFE 66
           VV  ++ +  Y+++G ++E   +   M     + N+VS+N +LSGF ++G   EA  +F+
Sbjct: 182 VVTCSALLCAYARKGCLEEVVRILSEMESSGIEANIVSWNGILSGFNRSGYHKEAVVMFQ 241

Query: 67  EM------PERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLI----R 116
           ++      P++  VS  +++  + D+  +   R +   + ++ ++    ++  +I    +
Sbjct: 242 KIHHLGFCPDQVTVS--SVLPSVGDSEMLNMGRLIHGYVIKQGLLKDKCVISAMIDMYGK 299

Query: 117 NGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEER----NVVTWTSM 172
           +G +     +FN   +      NA I G     ++ +A+ +FE  +E+    NVV+WTS+
Sbjct: 300 SGHVYGIISLFNQFEMMEAGVCNAYITGLSRNGLVDKALEMFELFKEQTMELNVVSWTSI 359

Query: 173 ISGYCRAGEVEEGYCLFRRMP----RKNVVSWTAMI---GGFAWNGFHKESLLLFIEMKG 225
           I+G  + G+  E   LFR M     + N V+  +M+   G  A  G H  S   F     
Sbjct: 360 IAGCAQNGKDIEALELFREMQVAGVKPNHVTIPSMLPACGNIAALG-HGRSTHGFAVRVH 418

Query: 226 ICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNA 285
           + D     NV   +++I+ Y + GR+  +Q +F+ +P ++ + W S+++G+   G+    
Sbjct: 419 LLD-----NVHVGSALIDMYAKCGRINLSQIVFNMMPTKNLVCWNSLMNGFSMHGKAKEV 473

Query: 286 YYLFHN-MPDR---DAVAWTAMISGLVQNELFVEA-TYLFMEMRAHGVPPLNATFSV--- 337
             +F + M  R   D +++T+++S   Q  L  E   Y  M    +G+ P    +S    
Sbjct: 474 MSIFESLMRTRLKPDFISFTSLLSACGQVGLTDEGWKYFKMMSEEYGIKPRLEHYSCMVN 533

Query: 338 LFGAAG 343
           L G AG
Sbjct: 534 LLGRAG 539



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 82/338 (24%), Positives = 145/338 (42%), Gaps = 33/338 (9%)

Query: 36  LMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKL 95
           L+  + V+S  AM+  + ++G +     LF +          A I GL+  G V +A ++
Sbjct: 283 LLKDKCVIS--AMIDMYGKSGHVYGIISLFNQFEMMEAGVCNAYITGLSRNGLVDKALEM 340

Query: 96  FEEMPER----NVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMM 151
           FE   E+    NVVSW S++ G  +NG+  EA ++F  M +  V   +  I   +  C  
Sbjct: 341 FELFKEQTMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNHVTIPSMLPAC-- 398

Query: 152 GEAIVLFEEMEER----------NVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWT 201
           G    L                 NV   +++I  Y + G +     +F  MP KN+V W 
Sbjct: 399 GNIAALGHGRSTHGFAVRVHLLDNVHVGSALIDMYAKCGRINLSQIVFNMMPTKNLVCWN 458

Query: 202 AMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTV 261
           +++ GF+ +G  KE + +F   + +       +  S  S+++   + G  +E    F  +
Sbjct: 459 SLMNGFSMHGKAKEVMSIF---ESLMRTRLKPDFISFTSLLSACGQVGLTDEGWKYFKMM 515

Query: 262 PVRDEIS-----WTSMIDGYLSVGQVSNAYYLFHNMP-DRDAVAWTAMI-SGLVQNELFV 314
                I      ++ M++     G++  AY L   MP + D+  W A++ S  +QN   V
Sbjct: 516 SEEYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKEMPFEPDSCVWGALLNSCRLQNN--V 573

Query: 315 EATYLFMEMRAHGVPPLNATFSVL---FGAAGATANID 349
           +   +  E   H  P    T+ +L   + A G    +D
Sbjct: 574 DLAEIAAEKLFHLEPENPGTYVLLSNIYAAKGMWTEVD 611



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/142 (28%), Positives = 76/142 (53%), Gaps = 11/142 (7%)

Query: 12  VHLTSS-ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMP- 69
           VH+ S+ I  Y+K G I+ ++ +F +MP +N+V +N++++GF  +G+  E   +FE +  
Sbjct: 423 VHVGSALIDMYAKCGRINLSQIVFNMMPTKNLVCWNSLMNGFSMHGKAKEVMSIFESLMR 482

Query: 70  ---ERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVS-----WNSMVVGLIRNGELN 121
              + + +S+T+++      G   E  K F+ M E   +      ++ MV  L R G+L 
Sbjct: 483 TRLKPDFISFTSLLSACGQVGLTDEGWKYFKMMSEEYGIKPRLEHYSCMVNLLGRAGKLQ 542

Query: 122 EARKVFNSMPIK-NVISWNAMI 142
           EA  +   MP + +   W A++
Sbjct: 543 EAYDLIKEMPFEPDSCVWGALL 564


>gi|302142753|emb|CBI19956.3| unnamed protein product [Vitis vinifera]
          Length = 446

 Score =  296 bits (757), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 161/442 (36%), Positives = 252/442 (57%), Gaps = 11/442 (2%)

Query: 140 AMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVS 199
           +++  Y +C  + ++  +F+ M ERN VTW +MI GY   G+ +    LF +M  +  V+
Sbjct: 5   SLVCMYAKCGNVVDSRKVFDYMPERNAVTWNAMICGYLGNGDSKSAVLLFEKMSIRTAVT 64

Query: 200 WTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFD 259
           W  MI GFA +G  + +   F ++     N     V +   M++GY R   +E A+ +F+
Sbjct: 65  WIEMIDGFARSGDTETARRFFDDVPSELRN-----VVTWTVMVDGYARNAEMEAAREVFE 119

Query: 260 TVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYL 319
            +P R+  +W+SMI GY   G V  A  +F  +P R+ V W ++ISG  QN    EA   
Sbjct: 120 GMPQRNFFAWSSMISGYCKKGNVKEARSIFDRIPVRNLVNWNSLISGYAQNGFSEEALEA 179

Query: 320 FMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAK 379
           F +M+A G  P   T + +  A      +D G++IH ++     + +  + N L+ MYAK
Sbjct: 180 FGKMQAEGFEPDEVTIASVLSACSQLGLLDAGKKIHHMMNHKGIKLNQFVLNGLVDMYAK 239

Query: 380 CGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGI 439
           CG + NA  IF  M  R+   WNSM+ GF+ HG + E L+ F  M +S   P+ +TFL +
Sbjct: 240 CGDLANARLIFEGMAHRNRACWNSMISGFAIHGQSKEALEFFGRMEDSHEGPDEITFLSV 299

Query: 440 LSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEP 499
           LSAC+H G V+ G E+F+ M + Y +  G +HY  +I+LLGRAG+IKEA + + R+P +P
Sbjct: 300 LSACAHGGFVNAGLEIFSRM-EKYGLTTGIKHYGCLIDLLGRAGRIKEAYDLIKRMPVKP 358

Query: 500 DHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPA----HVVLCNIYAASGRHVEE 555
           +  +WGALLGAC     + E+A+   + ++++D   +      +V+L NIYAAS R  + 
Sbjct: 359 NDVVWGALLGACRV-HLDMEMADRVVEEIVKVDSNISSGCDSHYVLLSNIYAASDRWEKA 417

Query: 556 HKLRMDMGLKGVRKVPGCSWLM 577
            K+RM+M  KG +K  GCS +M
Sbjct: 418 EKMRMEMANKGFQKTSGCSSIM 439



 Score =  196 bits (498), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 121/405 (29%), Positives = 202/405 (49%), Gaps = 18/405 (4%)

Query: 52  FLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMV 111
           + + G + ++R++F+ MPERN V+W AMICG    G    A  LFE+M  R  V+W  M+
Sbjct: 10  YAKCGNVVDSRKVFDYMPERNAVTWNAMICGYLGNGDSKSAVLLFEKMSIRTAVTWIEMI 69

Query: 112 VGLIRNGELNEARKVFNSMP--IKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTW 169
            G  R+G+   AR+ F+ +P  ++NV++W  M+ GY     M  A  +FE M +RN   W
Sbjct: 70  DGFARSGDTETARRFFDDVPSELRNVVTWTVMVDGYARNAEMEAAREVFEGMPQRNFFAW 129

Query: 170 TSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDN 229
           +SMISGYC+ G V+E   +F R+P +N+V+W ++I G+A NGF +E+L  F +M+     
Sbjct: 130 SSMISGYCKKGNVKEARSIFDRIPVRNLVNWNSLISGYAQNGFSEEALEAFGKMQA---E 186

Query: 230 GNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVR----DEISWTSMIDGYLSVGQVSNA 285
           G   +  +  S+++   + G L+  + +   +  +    ++     ++D Y   G ++NA
Sbjct: 187 GFEPDEVTIASVLSACSQLGLLDAGKKIHHMMNHKGIKLNQFVLNGLVDMYAKCGDLANA 246

Query: 286 YYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGAT 345
             +F  M  R+   W +MISG   +    EA   F  M      P   TF  +  A    
Sbjct: 247 RLIFEGMAHRNRACWNSMISGFAIHGQSKEALEFFGRMEDSHEGPDEITFLSVLSACAHG 306

Query: 346 ANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNM-VSRDLVSWNSM 404
             ++ G +I   + K    + +    CLI +  + G I  AY++   M V  + V W ++
Sbjct: 307 GFVNAGLEIFSRMEKYGLTTGIKHYGCLIDLLGRAGRIKEAYDLIKRMPVKPNDVVWGAL 366

Query: 405 VMGFSHH-------GLANETLKVFESMLESGTHPNSVTFLGILSA 442
           +     H        +  E +KV +S + SG   + V    I +A
Sbjct: 367 LGACRVHLDMEMADRVVEEIVKV-DSNISSGCDSHYVLLSNIYAA 410



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 99/365 (27%), Positives = 165/365 (45%), Gaps = 76/365 (20%)

Query: 15  TSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGR----------------- 57
           TS +  Y+K G + +++ +F  MP+RN V++NAM+ G+L NG                  
Sbjct: 4   TSLVCMYAKCGNVVDSRKVFDYMPERNAVTWNAMICGYLGNGDSKSAVLLFEKMSIRTAV 63

Query: 58  --------------LSEARRLFEEMPE--RNVVSWTAMICGLADAGRVCEARKLFEEMPE 101
                            ARR F+++P   RNVV+WT M+ G A    +  AR++FE MP+
Sbjct: 64  TWIEMIDGFARSGDTETARRFFDDVPSELRNVVTWTVMVDGYARNAEMEAAREVFEGMPQ 123

Query: 102 RNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEM 161
           RN  +W+SM+ G  + G + EAR +F+ +P++N+++WN++I+GY +     EA+  F +M
Sbjct: 124 RNFFAWSSMISGYCKKGNVKEARSIFDRIPVRNLVNWNSLISGYAQNGFSEEALEAFGKM 183

Query: 162 E----ERNVVTWTSMISG-----------------------------------YCRAGEV 182
           +    E + VT  S++S                                    Y + G++
Sbjct: 184 QAEGFEPDEVTIASVLSACSQLGLLDAGKKIHHMMNHKGIKLNQFVLNGLVDMYAKCGDL 243

Query: 183 EEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMI 242
                +F  M  +N   W +MI GFA +G  KE+L  F  M+   +  +     S  S  
Sbjct: 244 ANARLIFEGMAHRNRACWNSMISGFAIHGQSKEALEFFGRMEDSHEGPDEITFLSVLSAC 303

Query: 243 --NGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDR-DAVA 299
              G++  G LE    +           +  +ID     G++  AY L   MP + + V 
Sbjct: 304 AHGGFVNAG-LEIFSRMEKYGLTTGIKHYGCLIDLLGRAGRIKEAYDLIKRMPVKPNDVV 362

Query: 300 WTAMI 304
           W A++
Sbjct: 363 WGALL 367


>gi|223948849|gb|ACN28508.1| unknown [Zea mays]
 gi|413937254|gb|AFW71805.1| hypothetical protein ZEAMMB73_337002 [Zea mays]
          Length = 608

 Score =  295 bits (756), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 183/494 (37%), Positives = 274/494 (55%), Gaps = 41/494 (8%)

Query: 123 ARKVFNSMPIKNVISWNAMIAGYVE-CCMMGEAIVLFEEM--EERNVVTWTSMISGYCRA 179
           A K F  +P KN  S+N ++A  +     + +A  LF+ M  + RN+V++ +++S     
Sbjct: 86  AVKAFYDLPHKNAHSYNTLLAALLRRPDTLPDAFRLFDTMPADSRNLVSYNTLMSSLAHH 145

Query: 180 GEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLL----------FIEMKG-ICD 228
           G   E   +  R+ R   +       G A + F   S+              EM G +  
Sbjct: 146 GRQVEALRVVARLARDRFLG-----PGLAMDRFTVVSVATACAGIGAARPLREMHGAVVV 200

Query: 229 NGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYL 288
           +G    V   N+M+N Y +  R+E+A++LFD V +RD ++WTSMI GY  V ++  A  +
Sbjct: 201 SGMEFTVIMANAMLNAYSKARRVEDARHLFDQVSIRDNVTWTSMISGYCQVKKLHEAVQV 260

Query: 289 FHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANI 348
           F  MPD+D +AWTA+ISG  QN     A  LF +M A GV P   T  VL  A GA A +
Sbjct: 261 FDMMPDKDRIAWTALISGHEQNGEEDTALELFEQMLAKGVSP---TPFVLVSALGACAKL 317

Query: 349 DL---GRQIHCVLMKTESES---DLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWN 402
            L   G+++HC +++    S   ++ + N L+ MY+KCG +  A  +F  M  RD +SWN
Sbjct: 318 GLVTRGKELHCFILRRNIGSVPFNIFIHNALVDMYSKCGDMMAAMAVFDWMPERDFISWN 377

Query: 403 SMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDV 462
           SMV GFSH+GL  ++L +FE ML +G  P  VTFL +L+ACSH+GLVS G  +  +M D 
Sbjct: 378 SMVTGFSHNGLGKQSLAIFEEMLVAGVRPTHVTFLAVLTACSHSGLVSNGRLVLESMED- 436

Query: 463 YKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRI-------WGALLGACGFCE 515
           + ++P  EHY + I+ LGR  +++EA EF+  LP     RI       WGALLGAC    
Sbjct: 437 HGVEPRAEHYAAFIDALGRNHQLEEATEFIKDLP----SRIGPGTAGSWGALLGACRL-H 491

Query: 516 GNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSW 575
           GN E+AE  A+ L  L+P N+  +V++ NIYAA+G+  +  ++R  M  KG++K    SW
Sbjct: 492 GNIELAEEVAEFLFRLEPGNSGRYVMMSNIYAAAGQWDDARRVRGLMKEKGLKKDQAYSW 551

Query: 576 LMRNGGIQMFLSGD 589
           +       +F++ D
Sbjct: 552 IEVRSAKHVFVADD 565



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 112/436 (25%), Positives = 190/436 (43%), Gaps = 71/436 (16%)

Query: 27  IDEAKALFQLMP--QRNVVSYNAMLSGFLQNGRLSEARRLFEEM-------PERNVVSWT 77
           + +A  LF  MP   RN+VSYN ++S    +GR  EA R+   +       P   +  +T
Sbjct: 115 LPDAFRLFDTMPADSRNLVSYNTLMSSLAHHGRQVEALRVVARLARDRFLGPGLAMDRFT 174

Query: 78  AMICGLADAGRVCEARKLFE-------EMPERNVVSWNSMVVGLIRNGELNEARKVFNSM 130
            +    A AG +  AR L E          E  V+  N+M+    +   + +AR +F+ +
Sbjct: 175 VVSVATACAG-IGAARPLREMHGAVVVSGMEFTVIMANAMLNAYSKARRVEDARHLFDQV 233

Query: 131 PIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFR 190
            I++ ++W +MI+GY +   + EA+ +F+ M +++ + WT++ISG+ + GE +    LF 
Sbjct: 234 SIRDNVTWTSMISGYCQVKKLHEAVQVFDMMPDKDRIAWTALISGHEQNGEEDTALELFE 293

Query: 191 RMPRKNVVS----WTAMIGGFAWNGF--HKESLLLFIEMKGICDNGNNCNVQSCNSMING 244
           +M  K V        + +G  A  G     + L  FI  + I     N  +   N++++ 
Sbjct: 294 QMLAKGVSPTPFVLVSALGACAKLGLVTRGKELHCFILRRNIGSVPFNIFIH--NALVDM 351

Query: 245 YIRFGRLEEAQNLFDTVPVRDEISWTSMIDG----------------------------Y 276
           Y + G +  A  +FD +P RD ISW SM+ G                            +
Sbjct: 352 YSKCGDMMAAMAVFDWMPERDFISWNSMVTGFSHNGLGKQSLAIFEEMLVAGVRPTHVTF 411

Query: 277 LSV-------GQVSNAYYLFHNMPDRD----AVAWTAMISGLVQNELFVEATYLFMEMRA 325
           L+V       G VSN   +  +M D      A  + A I  L +N    EAT    ++ +
Sbjct: 412 LAVLTACSHSGLVSNGRLVLESMEDHGVEPRAEHYAAFIDALGRNHQLEEATEFIKDLPS 471

Query: 326 HGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTE---SESDLILENCLISMYAKCGV 382
              P    ++  L GA     NI+L  ++   L + E   S   +++ N    +YA  G 
Sbjct: 472 RIGPGTAGSWGALLGACRLHGNIELAEEVAEFLFRLEPGNSGRYVMMSN----IYAAAGQ 527

Query: 383 IDNAYNIFSNMVSRDL 398
            D+A  +   M  + L
Sbjct: 528 WDDARRVRGLMKEKGL 543



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 74/270 (27%), Positives = 137/270 (50%), Gaps = 20/270 (7%)

Query: 11  VVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPE 70
           V+   + +  YSK   +++A+ LF  +  R+ V++ +M+SG+ Q  +L EA ++F+ MP+
Sbjct: 207 VIMANAMLNAYSKARRVEDARHLFDQVSIRDNVTWTSMISGYCQVKKLHEAVQVFDMMPD 266

Query: 71  RNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVV---------GLIRNG-EL 120
           ++ ++WTA+I G    G    A +LFE+M  + V     ++V         GL+  G EL
Sbjct: 267 KDRIAWTALISGHEQNGEEDTALELFEQMLAKGVSPTPFVLVSALGACAKLGLVTRGKEL 326

Query: 121 N--EARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCR 178
           +    R+   S+P  N+   NA++  Y +C  M  A+ +F+ M ER+ ++W SM++G+  
Sbjct: 327 HCFILRRNIGSVPF-NIFIHNALVDMYSKCGDMMAAMAVFDWMPERDFISWNSMVTGFSH 385

Query: 179 AGEVEEGYCLFRRM----PRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCN 234
            G  ++   +F  M     R   V++ A++   + +G      L+   M+   D+G    
Sbjct: 386 NGLGKQSLAIFEEMLVAGVRPTHVTFLAVLTACSHSGLVSNGRLVLESME---DHGVEPR 442

Query: 235 VQSCNSMINGYIRFGRLEEAQNLFDTVPVR 264
            +   + I+   R  +LEEA      +P R
Sbjct: 443 AEHYAAFIDALGRNHQLEEATEFIKDLPSR 472


>gi|359497527|ref|XP_003635554.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g22760-like [Vitis vinifera]
 gi|296083555|emb|CBI23551.3| unnamed protein product [Vitis vinifera]
          Length = 580

 Score =  295 bits (756), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 161/440 (36%), Positives = 251/440 (57%), Gaps = 11/440 (2%)

Query: 139 NAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVV 198
            A++  Y +   M  A  +F+EM ERNVV+W SM++GY ++G++     +F  +P+K+V+
Sbjct: 147 TALVDFYCKLGDMEIARKMFDEMAERNVVSWNSMLAGYLKSGDLVVAQRVFDEIPQKDVI 206

Query: 199 SWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLF 258
           SW +MI G+A  G  +++L LF +M          N  S N+MI+GY+ FG ++ A++ F
Sbjct: 207 SWNSMISGYARAGDMEKALSLFQQMP-------ERNFASWNAMISGYVEFGDIDSARSFF 259

Query: 259 DTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATY 318
           D +P R+ +SW +MI GY   G V +A  LF  +  +D + + AMI+   QN    EA  
Sbjct: 260 DAMPQRNNVSWMTMISGYSKCGDVDSACELFDQVGGKDLLLFNAMIACYAQNSRPKEALK 319

Query: 319 LFMEMRAH--GVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISM 376
           LF  M      V P   T + +  A     ++  G  I   + +   E D  L   L+ +
Sbjct: 320 LFNNMLNPDVNVQPDEMTLASVISACSQLGDLRFGPWIESYMRRLGIEMDGHLATALLDL 379

Query: 377 YAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTF 436
           YAKCG ID AY +F  +  +DLV++ +M++G   +G A + +K+F+ M+++   PNS+TF
Sbjct: 380 YAKCGSIDKAYELFHGLRKKDLVAYTAMILGCGINGKAIDAIKLFDEMVDAQIFPNSITF 439

Query: 437 LGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLP 496
           +G+L+A +HAGLV  G+  F +M   Y + P  +HY  M++L GRAG+++EA E +  +P
Sbjct: 440 IGLLTAYNHAGLVEEGYHCFTSM-KKYNLVPSVDHYGIMVDLFGRAGRLQEALELIKSMP 498

Query: 497 FEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEH 556
            +P   +WGALL AC     N E  E AA+   EL+P       +L NIYA+  R  +  
Sbjct: 499 MQPHAGVWGALLLACRL-HNNVEFGEIAAQHCFELEPDTTGYCSLLSNIYASGERWDDVK 557

Query: 557 KLRMDMGLKGVRKVPGCSWL 576
           +LR     KG  K+PGCSW+
Sbjct: 558 RLRKVTKEKGFSKIPGCSWM 577



 Score =  188 bits (477), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 135/474 (28%), Positives = 238/474 (50%), Gaps = 73/474 (15%)

Query: 15  TSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVV 74
           T+ +  Y K G ++ A+ +F  M +RNVVS+N+ML+G+L++G L  A+R+F+E+P+++V+
Sbjct: 147 TALVDFYCKLGDMEIARKMFDEMAERNVVSWNSMLAGYLKSGDLVVAQRVFDEIPQKDVI 206

Query: 75  SWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKN 134
           SW +MI G A AG + +A  LF++MPERN  SWN+M+ G +  G+++ AR  F++MP +N
Sbjct: 207 SWNSMISGYARAGDMEKALSLFQQMPERNFASWNAMISGYVEFGDIDSARSFFDAMPQRN 266

Query: 135 VISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPR 194
            +SW  MI+GY +C  +  A  LF+++  ++++ + +MI+ Y +    +E   LF  M  
Sbjct: 267 NVSWMTMISGYSKCGDVDSACELFDQVGGKDLLLFNAMIACYAQNSRPKEALKLFNNMLN 326

Query: 195 KNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEA 254
            +V            N    E  L  +             + +C+ +  G +RFG   E+
Sbjct: 327 PDV------------NVQPDEMTLASV-------------ISACSQL--GDLRFGPWIES 359

Query: 255 QNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFV 314
                 + +   ++ T+++D Y   G +  AY LFH +  +D VA+TAMI G   N   +
Sbjct: 360 YMRRLGIEMDGHLA-TALLDLYAKCGSIDKAYELFHGLRKKDLVAYTAMILGCGINGKAI 418

Query: 315 EATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLI 374
           +A  LF EM    + P + TF              +G                     L+
Sbjct: 419 DAIKLFDEMVDAQIFPNSITF--------------IG---------------------LL 443

Query: 375 SMYAKCGVIDNAYNIFSNMVSRDLVS----WNSMVMGFSHHGLANETLKVFESMLESGTH 430
           + Y   G+++  Y+ F++M   +LV     +  MV  F   G   E L++ +SM      
Sbjct: 444 TAYNHAGLVEEGYHCFTSMKKYNLVPSVDHYGIMVDLFGRAGRLQEALELIKSM---PMQ 500

Query: 431 PNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGK 484
           P++  +  +L AC     V  G E+  A    ++++P    Y S+++ +  +G+
Sbjct: 501 PHAGVWGALLLACRLHNNVEFG-EI--AAQHCFELEPDTTGYCSLLSNIYASGE 551



 Score = 65.5 bits (158), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 69/285 (24%), Positives = 121/285 (42%), Gaps = 31/285 (10%)

Query: 288 LFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATAN 347
           + H+    D+ +W   I    Q+  F EA  L+++M+  G+ P     S    A    A 
Sbjct: 61  VLHHSKSPDSFSWACAIRFSTQHGQFKEAFALYVQMQRWGLWPTTFALSSALKACARIAY 120

Query: 348 IDLGRQIHCVLMK---TESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSM 404
              G  IH  + K   +     + +E  L+  Y K G ++ A  +F  M  R++VSWNSM
Sbjct: 121 RMGGLSIHGQVQKFGFSGGGDGIYVETALVDFYCKLGDMEIARKMFDEMAERNVVSWNSM 180

Query: 405 VMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYK 464
           + G+    L +  L V + + +     + +++  ++S  + AG + +   LF  M     
Sbjct: 181 LAGY----LKSGDLVVAQRVFDEIPQKDVISWNSMISGYARAGDMEKALSLFQQM----- 231

Query: 465 IQPGPEH----YVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGA---CGFCEGN 517
               PE     + +MI+     G I  A  F   +P + ++  W  ++     CG  +  
Sbjct: 232 ----PERNFASWNAMISGYVEFGDIDSARSFFDAMP-QRNNVSWMTMISGYSKCGDVDSA 286

Query: 518 AEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDM 562
            E+ +    + L L   NA   ++ C  YA + R  E  KL  +M
Sbjct: 287 CELFDQVGGKDLLL--FNA---MIAC--YAQNSRPKEALKLFNNM 324


>gi|414587344|tpg|DAA37915.1| TPA: hypothetical protein ZEAMMB73_465451 [Zea mays]
 gi|414587345|tpg|DAA37916.1| TPA: hypothetical protein ZEAMMB73_465451 [Zea mays]
          Length = 920

 Score =  295 bits (756), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 183/623 (29%), Positives = 310/623 (49%), Gaps = 51/623 (8%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMP----ERNV 73
           I  Y   G    A+ +F  M   + V++N ++SG  Q G    A ++F+EM       + 
Sbjct: 186 IALYLGFGSFKLAERVFCDMLFCDRVTFNTLISGHAQCGHGECALQIFDEMQLSGLRPDC 245

Query: 74  VSWTAMICGLADAGRVCEARKLFEEMPER----NVVSWNSMVVGLIRNGELNEARKVFNS 129
           V+  +++   A  G + + ++L   + +     + ++  S++   ++ G++  A  +FN 
Sbjct: 246 VTVASLLAACASVGDLQKGKQLHSYLLKAGMSFDYITEGSLLDLYVKCGDIETAHDIFNL 305

Query: 130 MPIKNVISWNAMIAGYVECCMMGEAIVLFEEME--------------------------- 162
               NV+ WN M+  Y +   + ++  +F +M+                           
Sbjct: 306 GDRTNVVLWNLMLVAYGQISDLAKSFEIFGQMQATGIHPNQFTYPCILRTCTCTGQIELG 365

Query: 163 ------------ERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWN 210
                       E ++     +I  Y + G +++   +   + +++VVSWT+MI G+  +
Sbjct: 366 EQIHSLSIKNGFESDMYVSGVLIDMYSKYGCLDKARKILEMLEKRDVVSWTSMIAGYVQH 425

Query: 211 GFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGY--IRFGRLEEAQNLFDTVPVRDEIS 268
            F +E+L  F EM+      +N  + S  S   G   +R G L+    ++ +    D   
Sbjct: 426 DFCEEALATFKEMQDCGVWPDNIGLASAASACAGIKAMRQG-LQIHARVYVSGYAADISI 484

Query: 269 WTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGV 328
           W ++++ Y   G+   A+ LF  +  +D + W  +ISG  Q+ L+ +A  +FM+M   G 
Sbjct: 485 WNTLVNLYARCGRSEEAFSLFREIEHKDEITWNGLISGFGQSRLYKQALMVFMKMGQAGA 544

Query: 329 PPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYN 388
                TF     A    A+I  G+Q+H   +KT   S+  + N LIS+Y KCG I++A  
Sbjct: 545 KYNVFTFISAISALANLADIKQGKQVHGRAVKTGHTSETEVANALISLYGKCGSIEDAKM 604

Query: 389 IFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGL 448
           IFS M  R+ VSWN+++   S HG   E L +F+ M + G  PN VTF+G+L+ACSH GL
Sbjct: 605 IFSEMSLRNEVSWNTIITSCSQHGRGLEALDLFDQMKQEGLKPNDVTFIGVLAACSHVGL 664

Query: 449 VSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALL 508
           V  G   F +M +VY + P P+HY  ++++LGRAG++  A  FV  +P   +  IW  LL
Sbjct: 665 VEEGLSYFKSMSNVYGLNPIPDHYACVVDILGRAGQLDRARRFVDEMPITANAMIWRTLL 724

Query: 509 GACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVR 568
            AC     N EI E AAK LLEL+P ++ ++V+L N YA +G+     ++R  M  +G+R
Sbjct: 725 SACKV-HKNIEIGELAAKHLLELEPHDSASYVLLSNAYAVTGKWANRDQVRKMMKDRGIR 783

Query: 569 KVPGCSWLMRNGGIQMFLSGDKI 591
           K PG SW+     +  F  GD++
Sbjct: 784 KEPGRSWIEVKNAVHAFFVGDRL 806



 Score =  163 bits (412), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 130/546 (23%), Positives = 242/546 (44%), Gaps = 58/546 (10%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEM------PER 71
           I  Y+K G + +A+ +F+ +  R+ VS+ AMLSG+ Q+G   EA RL+ +M      P  
Sbjct: 85  IDLYAKNGLVWQARQVFKELSSRDHVSWVAMLSGYAQSGLGKEAFRLYSQMHWTAVIPTP 144

Query: 72  NVVSWTAMIC---GLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFN 128
            V+S     C    L   GR+  A+   +       V  N+++   +  G    A +VF 
Sbjct: 145 YVLSSVLSACTKGKLFAQGRMIHAQVYKQAFCSETFVG-NALIALYLGFGSFKLAERVFC 203

Query: 129 SMPIKNVISWNAMIAGYVECCMMGEAIVLFEEME-------------------------- 162
            M   + +++N +I+G+ +C     A+ +F+EM+                          
Sbjct: 204 DMLFCDRVTFNTLISGHAQCGHGECALQIFDEMQLSGLRPDCVTVASLLAACASVGDLQK 263

Query: 163 -------------ERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAW 209
                          + +T  S++  Y + G++E  + +F    R NVV W  M+  +  
Sbjct: 264 GKQLHSYLLKAGMSFDYITEGSLLDLYVKCGDIETAHDIFNLGDRTNVVLWNLMLVAYGQ 323

Query: 210 NGFHKESLLLFIEMKGICDNGNN----CNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRD 265
                +S  +F +M+    + N     C +++C     G I  G    + ++ +      
Sbjct: 324 ISDLAKSFEIFGQMQATGIHPNQFTYPCILRTCTC--TGQIELGEQIHSLSIKNGFESDM 381

Query: 266 EISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRA 325
            +S   +ID Y   G +  A  +   +  RD V+WT+MI+G VQ++   EA   F EM+ 
Sbjct: 382 YVSGV-LIDMYSKYGCLDKARKILEMLEKRDVVSWTSMIAGYVQHDFCEEALATFKEMQD 440

Query: 326 HGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDN 385
            GV P N   +    A      +  G QIH  +  +   +D+ + N L+++YA+CG  + 
Sbjct: 441 CGVWPDNIGLASAASACAGIKAMRQGLQIHARVYVSGYAADISIWNTLVNLYARCGRSEE 500

Query: 386 AYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSH 445
           A+++F  +  +D ++WN ++ GF    L  + L VF  M ++G   N  TF+  +SA ++
Sbjct: 501 AFSLFREIEHKDEITWNGLISGFGQSRLYKQALMVFMKMGQAGAKYNVFTFISAISALAN 560

Query: 446 AGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWG 505
              + +G ++              E   ++I+L G+ G I++A+     +    +   W 
Sbjct: 561 LADIKQGKQVHGRAVKTGHTSE-TEVANALISLYGKCGSIEDAKMIFSEMSLR-NEVSWN 618

Query: 506 ALLGAC 511
            ++ +C
Sbjct: 619 TIITSC 624



 Score =  150 bits (380), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 114/443 (25%), Positives = 207/443 (46%), Gaps = 21/443 (4%)

Query: 84  ADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIA 143
           A  G V +AR++F+E+  R+ VSW +M+ G  ++G   EA ++++ M    VI    +++
Sbjct: 89  AKNGLVWQARQVFKELSSRDHVSWVAMLSGYAQSGLGKEAFRLYSQMHWTAVIPTPYVLS 148

Query: 144 GYVECCMMGEAIV--------LFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRK 195
             +  C  G+           ++++          ++I+ Y   G  +    +F  M   
Sbjct: 149 SVLSACTKGKLFAQGRMIHAQVYKQAFCSETFVGNALIALYLGFGSFKLAERVFCDMLFC 208

Query: 196 NVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQ 255
           + V++  +I G A  G  + +L +F EM+    +G   +  +  S++      G L++ +
Sbjct: 209 DRVTFNTLISGHAQCGHGECALQIFDEMQL---SGLRPDCVTVASLLAACASVGDLQKGK 265

Query: 256 NLFDTVPVR----DEISWTSMIDGYLSVGQVSNAYYLFHNMPDR-DAVAWTAMISGLVQN 310
            L   +       D I+  S++D Y+  G +  A+ +F N+ DR + V W  M+    Q 
Sbjct: 266 QLHSYLLKAGMSFDYITEGSLLDLYVKCGDIETAHDIF-NLGDRTNVVLWNLMLVAYGQI 324

Query: 311 ELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILE 370
               ++  +F +M+A G+ P   T+  +      T  I+LG QIH + +K   ESD+ + 
Sbjct: 325 SDLAKSFEIFGQMQATGIHPNQFTYPCILRTCTCTGQIELGEQIHSLSIKNGFESDMYVS 384

Query: 371 NCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTH 430
             LI MY+K G +D A  I   +  RD+VSW SM+ G+  H    E L  F+ M + G  
Sbjct: 385 GVLIDMYSKYGCLDKARKILEMLEKRDVVSWTSMIAGYVQHDFCEEALATFKEMQDCGVW 444

Query: 431 PNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEE 490
           P+++      SAC+    + +G ++   ++ V         + +++NL  R G+ +EA  
Sbjct: 445 PDNIGLASAASACAGIKAMRQGLQIHARVY-VSGYAADISIWNTLVNLYARCGRSEEA-- 501

Query: 491 FVLRLPFE-PDHRIWGALLGACG 512
           F L    E  D   W  L+   G
Sbjct: 502 FSLFREIEHKDEITWNGLISGFG 524



 Score = 99.0 bits (245), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 71/245 (28%), Positives = 118/245 (48%), Gaps = 10/245 (4%)

Query: 272 MIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPL 331
           +ID Y   G V  A  +F  +  RD V+W AM+SG  Q+ L  EA  L+ +M    V P 
Sbjct: 84  LIDLYAKNGLVWQARQVFKELSSRDHVSWVAMLSGYAQSGLGKEAFRLYSQMHWTAVIPT 143

Query: 332 NATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFS 391
               S +  A         GR IH  + K    S+  + N LI++Y   G    A  +F 
Sbjct: 144 PYVLSSVLSACTKGKLFAQGRMIHAQVYKQAFCSETFVGNALIALYLGFGSFKLAERVFC 203

Query: 392 NMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSR 451
           +M+  D V++N+++ G +  G     L++F+ M  SG  P+ VT   +L+AC+  G + +
Sbjct: 204 DMLFCDRVTFNTLISGHAQCGHGECALQIFDEMQLSGLRPDCVTVASLLAACASVGDLQK 263

Query: 452 GWELFNAMFDVYKIQPGPE-HYV---SMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGAL 507
           G +L +     Y ++ G    Y+   S+++L  + G I+ A + +  L    +  +W  +
Sbjct: 264 GKQLHS-----YLLKAGMSFDYITEGSLLDLYVKCGDIETAHD-IFNLGDRTNVVLWNLM 317

Query: 508 LGACG 512
           L A G
Sbjct: 318 LVAYG 322



 Score = 65.5 bits (158), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 44/147 (29%), Positives = 72/147 (48%), Gaps = 5/147 (3%)

Query: 353 QIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHG 412
           +IH   +     +D ++ N LI +YAK G++  A  +F  + SRD VSW +M+ G++  G
Sbjct: 64  EIHATSVVRGLGADRLIGNLLIDLYAKNGLVWQARQVFKELSSRDHVSWVAMLSGYAQSG 123

Query: 413 LANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHY 472
           L  E  +++  M  +   P       +LSAC+   L ++G  + +A   VYK     E +
Sbjct: 124 LGKEAFRLYSQMHWTAVIPTPYVLSSVLSACTKGKLFAQG-RMIHA--QVYKQAFCSETF 180

Query: 473 V--SMINLLGRAGKIKEAEEFVLRLPF 497
           V  ++I L    G  K AE     + F
Sbjct: 181 VGNALIALYLGFGSFKLAERVFCDMLF 207


>gi|225427280|ref|XP_002278897.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Vitis vinifera]
          Length = 719

 Score =  295 bits (756), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 170/477 (35%), Positives = 259/477 (54%), Gaps = 43/477 (9%)

Query: 112 VGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTS 171
           +G I +GE   AR +     + ++   N++I  Y  C  +G+A  +FE     ++VTW S
Sbjct: 172 IGSIGDGEKIHARILKFGFEL-DLFVRNSLIHMYSVCGRIGDARAMFEVCSISDLVTWNS 230

Query: 172 MISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGN 231
           MI GY + GE+     LF  MP +++ SW                               
Sbjct: 231 MIDGYVKNGEIGAARELFEEMPERDLFSW------------------------------- 259

Query: 232 NCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHN 291
                  NSMI GY+  G +  A++LF+ +P RD +SW  MIDGY  V  +  A  LF+ 
Sbjct: 260 -------NSMIAGYVGNGDMTAAEDLFNKMPFRDIVSWNCMIDGYAQVQNMEIACELFNW 312

Query: 292 MPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLG 351
           MP R+ V+W  M++  V+ + + E   +F +M    +P   AT   +  A      +D G
Sbjct: 313 MPYRNVVSWNIMLALYVRIKDYDECLRMFDKMMGETMPN-EATLVSVLTACAHLGRLDRG 371

Query: 352 RQIHCVLMKTES-ESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSH 410
           + IH  +      E D++L   L++MYAKCG +D A ++F  M +R +VSWNSM+MG+  
Sbjct: 372 KWIHSYIKNNRVIEPDVLLSTALLTMYAKCGAMDLARDVFDKMSNRSVVSWNSMIMGYGM 431

Query: 411 HGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPE 470
           HG A++ L++F  M + G  PN  TF+ +LSAC+H+G++  GW  F+ M   YKI+P  E
Sbjct: 432 HGQADKALEMFLDMEKRGPMPNDATFICVLSACAHSGMILEGWWYFDLMRRAYKIEPKVE 491

Query: 471 HYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLE 530
           HY  M++LLGRAG +K+ EE + ++P E    +WGALL AC     N+E+AE  AKRL+E
Sbjct: 492 HYGCMVDLLGRAGLMKDLEELIRKMPMEGGTALWGALLSACR-THSNSELAEIVAKRLIE 550

Query: 531 LDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWL-MRNGGIQMFL 586
           L+P +   +++L NIYAA G+  +   +R  M  +G+ K  G SW+ +   G Q F+
Sbjct: 551 LEPRDIGPYLLLSNIYAAEGKWDDVEIVRKMMKERGLTKTTGFSWVHIEEFGTQSFV 607



 Score =  152 bits (383), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 100/355 (28%), Positives = 168/355 (47%), Gaps = 43/355 (12%)

Query: 46  NAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVV 105
           N+++  +   GR+ +AR +FE     ++V+W +MI G    G +  AR+LFEEMPER++ 
Sbjct: 198 NSLIHMYSVCGRIGDARAMFEVCSISDLVTWNSMIDGYVKNGEIGAARELFEEMPERDLF 257

Query: 106 SWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERN 165
           SWNSM+ G + NG++  A  +FN MP ++++SWN MI GY +   M  A  LF  M  RN
Sbjct: 258 SWNSMIAGYVGNGDMTAAEDLFNKMPFRDIVSWNCMIDGYAQVQNMEIACELFNWMPYRN 317

Query: 166 VVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKG 225
           VV+W  M++ Y R  + +E   +F +M  + + +   ++           S+L      G
Sbjct: 318 VVSWNIMLALYVRIKDYDECLRMFDKMMGETMPNEATLV-----------SVLTACAHLG 366

Query: 226 ICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNA 285
             D G           I+ YI+  R+ E   L            T+++  Y   G +  A
Sbjct: 367 RLDRGK---------WIHSYIKNNRVIEPDVLLS----------TALLTMYAKCGAMDLA 407

Query: 286 YYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGAT 345
             +F  M +R  V+W +MI G   +    +A  +F++M   G  P +ATF  +  A   +
Sbjct: 408 RDVFDKMSNRSVVSWNSMIMGYGMHGQADKALEMFLDMEKRGPMPNDATFICVLSACAHS 467

Query: 346 ANI-------DLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNM 393
             I       DL R+ + +  K E         C++ +  + G++ +   +   M
Sbjct: 468 GMILEGWWYFDLMRRAYKIEPKVEH------YGCMVDLLGRAGLMKDLEELIRKM 516



 Score =  146 bits (368), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 103/389 (26%), Positives = 185/389 (47%), Gaps = 56/389 (14%)

Query: 16  SSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVS 75
           S I  YS  G I +A+A+F++    ++V++N+M+ G+++NG +  AR LFEEMPER++ S
Sbjct: 199 SLIHMYSVCGRIGDARAMFEVCSISDLVTWNSMIDGYVKNGEIGAARELFEEMPERDLFS 258

Query: 76  WTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNV 135
           W +MI G    G +  A  LF +MP R++VSWN M+ G  +   +  A ++FN MP +NV
Sbjct: 259 WNSMIAGYVGNGDMTAAEDLFNKMPFRDIVSWNCMIDGYAQVQNMEIACELFNWMPYRNV 318

Query: 136 ISWNAMIAGYVECCMMGEAIVLFEEME--------------------------------- 162
           +SWN M+A YV      E + +F++M                                  
Sbjct: 319 VSWNIMLALYVRIKDYDECLRMFDKMMGETMPNEATLVSVLTACAHLGRLDRGKWIHSYI 378

Query: 163 ------ERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKES 216
                 E +V+  T++++ Y + G ++    +F +M  ++VVSW +MI G+  +G   ++
Sbjct: 379 KNNRVIEPDVLLSTALLTMYAKCGAMDLARDVFDKMSNRSVVSWNSMIMGYGMHGQADKA 438

Query: 217 LLLFIEMKGICDNGNN----CNVQSC---NSMINGYIRFGRLEEAQNLFDTVPVRDEISW 269
           L +F++M+      N+    C + +C     ++ G+  F  +  A  +   V       +
Sbjct: 439 LEMFLDMEKRGPMPNDATFICVLSACAHSGMILEGWWYFDLMRRAYKIEPKVE-----HY 493

Query: 270 TSMIDGYLSVGQVSNAYYLFHNMPDRDAVA-WTAMISGL---VQNELFVEATYLFMEMRA 325
             M+D     G + +   L   MP     A W A++S       +EL        +E+  
Sbjct: 494 GCMVDLLGRAGLMKDLEELIRKMPMEGGTALWGALLSACRTHSNSELAEIVAKRLIELEP 553

Query: 326 HGVPPLNATFSVLFGAAGATANIDLGRQI 354
             + P     S ++ A G   ++++ R++
Sbjct: 554 RDIGPY-LLLSNIYAAEGKWDDVEIVRKM 581



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 46/146 (31%), Positives = 73/146 (50%), Gaps = 1/146 (0%)

Query: 282 VSNAYYLFHNMPDRDA-VAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFG 340
           V +A  LF  + + DA +  T M + +  N+ +    + + +M    V P + TF +L  
Sbjct: 108 VQHAVSLFEGLEEPDAFICNTIMRTYVNVNDPYTALGFYYEQMVRKCVAPNHYTFPLLVK 167

Query: 341 AAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVS 400
                 +I  G +IH  ++K   E DL + N LI MY+ CG I +A  +F      DLV+
Sbjct: 168 VCWEIGSIGDGEKIHARILKFGFELDLFVRNSLIHMYSVCGRIGDARAMFEVCSISDLVT 227

Query: 401 WNSMVMGFSHHGLANETLKVFESMLE 426
           WNSM+ G+  +G      ++FE M E
Sbjct: 228 WNSMIDGYVKNGEIGAARELFEEMPE 253


>gi|297836116|ref|XP_002885940.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331780|gb|EFH62199.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 944

 Score =  295 bits (756), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 192/660 (29%), Positives = 322/660 (48%), Gaps = 85/660 (12%)

Query: 23  KRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNV--------- 73
           +RG +  A  ++  MP +N VS N M+SG+++ G LS AR LF+ MP+R V         
Sbjct: 56  RRGQVSAALKVYDEMPHKNTVSTNTMISGYVKMGDLSSARHLFDAMPDRTVVTWTILMGW 115

Query: 74  --------------------------VSWTAMICGLADA------GRV------------ 89
                                     V++T ++ G  DA      G+V            
Sbjct: 116 YAGNNHFDEAFKLFRQMCRSCTLPDYVTFTTLLPGCNDAVPQNAVGQVHAFAVKLGFDTN 175

Query: 90  -------------CEARKL------FEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSM 130
                        CE R+L      FEE+ +++ V++N+++ G  ++G   EA  +F  M
Sbjct: 176 LFLTVCNVLLKSYCEVRRLDLACVLFEEILDKDSVTFNTLITGYEKDGLYTEAIHLFLKM 235

Query: 131 PIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTS--------MISGYCRAGEV 182
                   +   +G ++  +      L +++   +V T  S        ++  Y +   V
Sbjct: 236 RQSGHKPSDFTFSGVLKAVVGLHDFALGQQLHGLSVTTGFSRDASVGNQILHFYSKHDRV 295

Query: 183 EEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMI 242
            E   LF  MP  + VS+  +I  ++    ++ESL LF EM+ +  +  N    +  S+ 
Sbjct: 296 LETRNLFNEMPELDFVSYNVVISSYSQAEQYEESLNLFREMQCMGFDRRNFPFATMLSIA 355

Query: 243 NGY--IRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAW 300
                ++ GR    Q +  T      +   S++D Y        A  +F ++  R  V+W
Sbjct: 356 ANLSSLQVGRQVHCQAIVATADSILHVG-NSLVDMYAKCEMFDEAELIFKSLSQRSTVSW 414

Query: 301 TAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMK 360
           TA+ISG VQ  L      LF +MR   +    +TF+ +  A+   A++ LG+Q+H  +++
Sbjct: 415 TALISGYVQKGLHGAGLKLFTKMRGANLRADQSTFATVLKASAGFASLLLGKQLHAFIIR 474

Query: 361 TESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKV 420
           + +  ++   + L+ MYAKCG I +A  +F  M  R+ VSWN+++  ++ +G     +  
Sbjct: 475 SGNLENVFSGSGLVDMYAKCGSIKDAVQVFEEMPDRNAVSWNALISAYADNGDGEAAIGA 534

Query: 421 FESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLG 480
           F  M++SG  P+SV+ LG+L ACSH G V +G E F AM  +Y I P  +HY  M++LLG
Sbjct: 535 FTKMIQSGLQPDSVSILGVLIACSHCGFVEQGTEFFQAMSPIYGITPKKKHYACMLDLLG 594

Query: 481 RAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPL-NAPAH 539
           R G+  EAE+ +  +PFEPD  +W ++L AC   + N  +AE AA++L  ++ L +A A+
Sbjct: 595 RNGRFAEAEKLMDEMPFEPDEIMWSSVLNACRIYK-NQSLAERAAEQLFSMEKLRDAAAY 653

Query: 540 VVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEIL 599
           V + NIYAA+G+      ++  M  +G++KVP  SW+  N  I +F S D+      EI+
Sbjct: 654 VSMSNIYAAAGKWENVRHVKKAMRERGIKKVPAYSWVEVNHKIHVFSSNDQTHPNGDEIV 713



 Score =  177 bits (450), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 128/500 (25%), Positives = 231/500 (46%), Gaps = 22/500 (4%)

Query: 46  NAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVV 105
           N  +   L+ G++S A ++++EMP +N VS   MI G    G +  AR LF+ MP+R VV
Sbjct: 48  NFTVEDLLRRGQVSAALKVYDEMPHKNTVSTNTMISGYVKMGDLSSARHLFDAMPDRTVV 107

Query: 106 SWNSMVVGLIRNGELNEARKVFNSM----PIKNVISWNAMIAG---YVECCMMGEAIVLF 158
           +W  ++     N   +EA K+F  M     + + +++  ++ G    V    +G+     
Sbjct: 108 TWTILMGWYAGNNHFDEAFKLFRQMCRSCTLPDYVTFTTLLPGCNDAVPQNAVGQVHAFA 167

Query: 159 EEMEERNVVTWT---SMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKE 215
            ++     +  T    ++  YC    ++    LF  +  K+ V++  +I G+  +G + E
Sbjct: 168 VKLGFDTNLFLTVCNVLLKSYCEVRRLDLACVLFEEILDKDSVTFNTLITGYEKDGLYTE 227

Query: 216 SLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPV-RDEISWTSMID 274
           ++ LF++M+      ++         + G   F   ++   L  T    RD      ++ 
Sbjct: 228 AIHLFLKMRQSGHKPSDFTFSGVLKAVVGLHDFALGQQLHGLSVTTGFSRDASVGNQILH 287

Query: 275 GYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNAT 334
            Y    +V     LF+ MP+ D V++  +IS   Q E + E+  LF EM+  G    N  
Sbjct: 288 FYSKHDRVLETRNLFNEMPELDFVSYNVVISSYSQAEQYEESLNLFREMQCMGFDRRNFP 347

Query: 335 FSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMV 394
           F+ +   A   +++ +GRQ+HC  +   ++S L + N L+ MYAKC + D A  IF ++ 
Sbjct: 348 FATMLSIAANLSSLQVGRQVHCQAIVATADSILHVGNSLVDMYAKCEMFDEAELIFKSLS 407

Query: 395 SRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWE 454
            R  VSW +++ G+   GL    LK+F  M  +    +  TF  +L A   AG  S    
Sbjct: 408 QRSTVSWTALISGYVQKGLHGAGLKLFTKMRGANLRADQSTFATVLKAS--AGFASL--- 462

Query: 455 LFNAMFDVYKIQPGPEHYV----SMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGA 510
           L       + I+ G    V     ++++  + G IK+A +    +P + +   W AL+ A
Sbjct: 463 LLGKQLHAFIIRSGNLENVFSGSGLVDMYAKCGSIKDAVQVFEEMP-DRNAVSWNALISA 521

Query: 511 CGFCEGNAEIAEHAAKRLLE 530
                G+ E A  A  ++++
Sbjct: 522 YA-DNGDGEAAIGAFTKMIQ 540



 Score =  117 bits (292), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 65/219 (29%), Positives = 111/219 (50%), Gaps = 2/219 (0%)

Query: 226 ICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNA 285
           I   G N +    N  +   +R G++  A  ++D +P ++ +S  +MI GY+ +G +S+A
Sbjct: 35  IIKTGFNTDTCRSNFTVEDLLRRGQVSAALKVYDEMPHKNTVSTNTMISGYVKMGDLSSA 94

Query: 286 YYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGAT 345
            +LF  MPDR  V WT ++     N  F EA  LF +M      P   TF+ L       
Sbjct: 95  RHLFDAMPDRTVVTWTILMGWYAGNNHFDEAFKLFRQMCRSCTLPDYVTFTTLLPGCNDA 154

Query: 346 ANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGV--IDNAYNIFSNMVSRDLVSWNS 403
              +   Q+H   +K   +++L L  C + + + C V  +D A  +F  ++ +D V++N+
Sbjct: 155 VPQNAVGQVHAFAVKLGFDTNLFLTVCNVLLKSYCEVRRLDLACVLFEEILDKDSVTFNT 214

Query: 404 MVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSA 442
           ++ G+   GL  E + +F  M +SG  P+  TF G+L A
Sbjct: 215 LITGYEKDGLYTEAIHLFLKMRQSGHKPSDFTFSGVLKA 253



 Score = 72.0 bits (175), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 77/338 (22%), Positives = 129/338 (38%), Gaps = 90/338 (26%)

Query: 11  VVHLTSSITK-YSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMP 69
           ++H+ +S+   Y+K    DEA+ +F+ + QR+ VS+ A++SG++Q G      +LF +M 
Sbjct: 379 ILHVGNSLVDMYAKCEMFDEAELIFKSLSQRSTVSWTALISGYVQKGLHGAGLKLFTKMR 438

Query: 70  E---------------------------------------RNVVSWTAMICGLADAGRVC 90
                                                    NV S + ++   A  G + 
Sbjct: 439 GANLRADQSTFATVLKASAGFASLLLGKQLHAFIIRSGNLENVFSGSGLVDMYAKCGSIK 498

Query: 91  EARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCM 150
           +A ++FEEMP+RN VSWN+++     NG+   A   F  M    +   +  I G +  C 
Sbjct: 499 DAVQVFEEMPDRNAVSWNALISAYADNGDGEAAIGAFTKMIQSGLQPDSVSILGVLIAC- 557

Query: 151 MGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRM-------PRKNVVSWTAM 203
                                    +C  G VE+G   F+ M       P+K    +  M
Sbjct: 558 ------------------------SHC--GFVEQGTEFFQAMSPIYGITPKKK--HYACM 589

Query: 204 IGGFAWNGFHKESLLLFIEMKGICDN------GNNCNVQSCNSMINGYIRFGRLEEAQNL 257
           +     NG   E+  L  EM    D        N C +    S+            A+ L
Sbjct: 590 LDLLGRNGRFAEAEKLMDEMPFEPDEIMWSSVLNACRIYKNQSLAE--------RAAEQL 641

Query: 258 FDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDR 295
           F    +RD  ++ SM + Y + G+  N  ++   M +R
Sbjct: 642 FSMEKLRDAAAYVSMSNIYAAAGKWENVRHVKKAMRER 679


>gi|225425100|ref|XP_002272744.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 622

 Score =  295 bits (756), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 167/447 (37%), Positives = 243/447 (54%), Gaps = 4/447 (0%)

Query: 154 AIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFH 213
           A  +F+ +   N   W +MI GY  + E EE   L+  M   +V    A    F      
Sbjct: 71  ARTVFDRIFRPNTFMWNTMIRGYSNSKEPEEALLLYHHMLYHSV-PHNAYTFPFLLKACS 129

Query: 214 KESLLLFIEM--KGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTS 271
             S L   +     I   G    + + NS++N Y + G ++ A+ LFD V  RD +SW S
Sbjct: 130 SMSALEETQQIHAHIIKMGFGSEIYTTNSLLNVYSKSGDIKSARLLFDQVDQRDTVSWNS 189

Query: 272 MIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPL 331
           MIDGY   G++  AY +F++MP+R+ ++WT+MISG V      EA  LF  M+  G+   
Sbjct: 190 MIDGYTKCGEIEMAYEIFNHMPERNIISWTSMISGCVGAGKPKEALNLFHRMQTAGIKLD 249

Query: 332 NATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFS 391
           N        A      +D G+ IH  + K E E D IL   LI MYAKCG ++ A  +F 
Sbjct: 250 NVALVSTLQACADLGVLDQGKWIHAYIKKHEIEIDPILGCVLIDMYAKCGDLEEAIEVFR 309

Query: 392 NMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSR 451
            M  + +  W +M+ G++ HG   E L+ F  M  +G  PN +TF GIL+ACSHAGLV  
Sbjct: 310 KMEEKGVSVWTAMISGYAIHGRGREALEWFMKMQTAGVEPNQMTFTGILTACSHAGLVHE 369

Query: 452 GWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGAC 511
              LF +M  ++  +P  EHY  M++LLGRAG +KEAEE +  +P +P+  IWGALL AC
Sbjct: 370 AKLLFESMERIHGFKPSIEHYGCMVDLLGRAGLLKEAEELIENMPVKPNAAIWGALLNAC 429

Query: 512 GFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVP 571
               GN E+ +   K L+++DP +   ++ L +I+AA+G   +  ++R  M  +GV K+P
Sbjct: 430 HI-HGNLELGKQIGKILIQVDPGHGGRYIHLASIHAAAGEWNQAARVRRQMKEQGVSKLP 488

Query: 572 GCSWLMRNGGIQMFLSGDKIPAQVAEI 598
           GCS +  NG    FL+GD+   Q+ EI
Sbjct: 489 GCSVISVNGTAHEFLAGDESHPQIKEI 515



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 89/285 (31%), Positives = 145/285 (50%), Gaps = 22/285 (7%)

Query: 16  SSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVS 75
           S +  YSK G I  A+ LF  + QR+ VS+N+M+ G+ + G +  A  +F  MPERN++S
Sbjct: 158 SLLNVYSKSGDIKSARLLFDQVDQRDTVSWNSMIDGYTKCGEIEMAYEIFNHMPERNIIS 217

Query: 76  WTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVV---------GLIRNGELNEARKV 126
           WT+MI G   AG+  EA  LF  M    +   N  +V         G++  G+   A   
Sbjct: 218 WTSMISGCVGAGKPKEALNLFHRMQTAGIKLDNVALVSTLQACADLGVLDQGKWIHAYIK 277

Query: 127 FNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGY 186
            + + I  ++    +I  Y +C  + EAI +F +MEE+ V  WT+MISGY   G   E  
Sbjct: 278 KHEIEIDPILGC-VLIDMYAKCGDLEEAIEVFRKMEEKGVSVWTAMISGYAIHGRGREAL 336

Query: 187 CLFRRMP----RKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMI 242
             F +M       N +++T ++   +  G   E+ LLF  M+ I  +G   +++    M+
Sbjct: 337 EWFMKMQTAGVEPNQMTFTGILTACSHAGLVHEAKLLFESMERI--HGFKPSIEHYGCMV 394

Query: 243 NGYIRFGRLEEAQNLFDTVPVRDEIS-WTSM-----IDGYLSVGQ 281
           +   R G L+EA+ L + +PV+   + W ++     I G L +G+
Sbjct: 395 DLLGRAGLLKEAEELIENMPVKPNAAIWGALLNACHIHGNLELGK 439



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 71/305 (23%), Positives = 134/305 (43%), Gaps = 37/305 (12%)

Query: 235 VQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPD 294
           +Q C++M       G++ +   + D +P    +++ +  +     G ++ A  +F  +  
Sbjct: 25  LQRCSNMEELRQIHGQMLKTGLILDEIPASKLLAFCASPNS----GSLAYARTVFDRIFR 80

Query: 295 RDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQI 354
            +   W  MI G   ++   EA  L+  M  H VP    TF  L  A  + + ++  +QI
Sbjct: 81  PNTFMWNTMIRGYSNSKEPEEALLLYHHMLYHSVPHNAYTFPFLLKACSSMSALEETQQI 140

Query: 355 HCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSH---- 410
           H  ++K    S++   N L+++Y+K G I +A  +F  +  RD VSWNSM+ G++     
Sbjct: 141 HAHIIKMGFGSEIYTTNSLLNVYSKSGDIKSARLLFDQVDQRDTVSWNSMIDGYTKCGEI 200

Query: 411 ---------------------------HGLANETLKVFESMLESGTHPNSVTFLGILSAC 443
                                       G   E L +F  M  +G   ++V  +  L AC
Sbjct: 201 EMAYEIFNHMPERNIISWTSMISGCVGAGKPKEALNLFHRMQTAGIKLDNVALVSTLQAC 260

Query: 444 SHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRI 503
           +  G++ +G +  +A    ++I+  P     +I++  + G ++EA E V R   E    +
Sbjct: 261 ADLGVLDQG-KWIHAYIKKHEIEIDPILGCVLIDMYAKCGDLEEAIE-VFRKMEEKGVSV 318

Query: 504 WGALL 508
           W A++
Sbjct: 319 WTAMI 323


>gi|293336045|ref|NP_001168520.1| uncharacterized protein LOC100382300 [Zea mays]
 gi|195615774|gb|ACG29717.1| pentatricopeptide repeat protein PPR868-14 [Zea mays]
 gi|223946951|gb|ACN27559.1| unknown [Zea mays]
          Length = 616

 Score =  295 bits (756), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 183/494 (37%), Positives = 274/494 (55%), Gaps = 41/494 (8%)

Query: 123 ARKVFNSMPIKNVISWNAMIAGYVE-CCMMGEAIVLFEEM--EERNVVTWTSMISGYCRA 179
           A K F  +P KN  S+N ++A  +     + +A  LF+ M  + RN+V++ +++S     
Sbjct: 94  AVKAFYDLPHKNAHSYNTLLAALLRRPDTLPDAFRLFDTMPADSRNLVSYNTLMSSLAHH 153

Query: 180 GEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLL----------FIEMKG-ICD 228
           G   E   +  R+ R   +       G A + F   S+              EM G +  
Sbjct: 154 GRQVEALRVVARLARDRFLG-----PGLAMDRFTVVSVATACAGIGAARPLREMHGAVVV 208

Query: 229 NGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYL 288
           +G    V   N+M+N Y +  R+E+A++LFD V +RD ++WTSMI GY  V ++  A  +
Sbjct: 209 SGMEFTVIMANAMLNAYSKARRVEDARHLFDQVSIRDNVTWTSMISGYCQVKKLHEAVQV 268

Query: 289 FHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANI 348
           F  MPD+D +AWTA+ISG  QN     A  LF +M A GV P   T  VL  A GA A +
Sbjct: 269 FDMMPDKDRIAWTALISGHEQNGEEDTALELFEQMLAKGVSP---TPFVLVSALGACAKL 325

Query: 349 DL---GRQIHCVLMKTESES---DLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWN 402
            L   G+++HC +++    S   ++ + N L+ MY+KCG +  A  +F  M  RD +SWN
Sbjct: 326 GLVTRGKELHCFILRRNIGSVPFNIFIHNALVDMYSKCGDMMAAMAVFDWMPERDFISWN 385

Query: 403 SMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDV 462
           SMV GFSH+GL  ++L +FE ML +G  P  VTFL +L+ACSH+GLVS G  +  +M D 
Sbjct: 386 SMVTGFSHNGLGKQSLAIFEEMLVAGVRPTHVTFLAVLTACSHSGLVSNGRLVLESMED- 444

Query: 463 YKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRI-------WGALLGACGFCE 515
           + ++P  EHY + I+ LGR  +++EA EF+  LP     RI       WGALLGAC    
Sbjct: 445 HGVEPRAEHYAAFIDALGRNHQLEEATEFIKDLP----SRIGPGTAGSWGALLGACRL-H 499

Query: 516 GNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSW 575
           GN E+AE  A+ L  L+P N+  +V++ NIYAA+G+  +  ++R  M  KG++K    SW
Sbjct: 500 GNIELAEEVAEFLFRLEPGNSGRYVMMSNIYAAAGQWDDARRVRGLMKEKGLKKDQAYSW 559

Query: 576 LMRNGGIQMFLSGD 589
           +       +F++ D
Sbjct: 560 IEVRSAKHVFVADD 573



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 112/436 (25%), Positives = 190/436 (43%), Gaps = 71/436 (16%)

Query: 27  IDEAKALFQLMP--QRNVVSYNAMLSGFLQNGRLSEARRLFEEM-------PERNVVSWT 77
           + +A  LF  MP   RN+VSYN ++S    +GR  EA R+   +       P   +  +T
Sbjct: 123 LPDAFRLFDTMPADSRNLVSYNTLMSSLAHHGRQVEALRVVARLARDRFLGPGLAMDRFT 182

Query: 78  AMICGLADAGRVCEARKLFE-------EMPERNVVSWNSMVVGLIRNGELNEARKVFNSM 130
            +    A AG +  AR L E          E  V+  N+M+    +   + +AR +F+ +
Sbjct: 183 VVSVATACAG-IGAARPLREMHGAVVVSGMEFTVIMANAMLNAYSKARRVEDARHLFDQV 241

Query: 131 PIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFR 190
            I++ ++W +MI+GY +   + EA+ +F+ M +++ + WT++ISG+ + GE +    LF 
Sbjct: 242 SIRDNVTWTSMISGYCQVKKLHEAVQVFDMMPDKDRIAWTALISGHEQNGEEDTALELFE 301

Query: 191 RMPRKNVVS----WTAMIGGFAWNGF--HKESLLLFIEMKGICDNGNNCNVQSCNSMING 244
           +M  K V        + +G  A  G     + L  FI  + I     N  +   N++++ 
Sbjct: 302 QMLAKGVSPTPFVLVSALGACAKLGLVTRGKELHCFILRRNIGSVPFNIFIH--NALVDM 359

Query: 245 YIRFGRLEEAQNLFDTVPVRDEISWTSMIDG----------------------------Y 276
           Y + G +  A  +FD +P RD ISW SM+ G                            +
Sbjct: 360 YSKCGDMMAAMAVFDWMPERDFISWNSMVTGFSHNGLGKQSLAIFEEMLVAGVRPTHVTF 419

Query: 277 LSV-------GQVSNAYYLFHNMPDRD----AVAWTAMISGLVQNELFVEATYLFMEMRA 325
           L+V       G VSN   +  +M D      A  + A I  L +N    EAT    ++ +
Sbjct: 420 LAVLTACSHSGLVSNGRLVLESMEDHGVEPRAEHYAAFIDALGRNHQLEEATEFIKDLPS 479

Query: 326 HGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTE---SESDLILENCLISMYAKCGV 382
              P    ++  L GA     NI+L  ++   L + E   S   +++ N    +YA  G 
Sbjct: 480 RIGPGTAGSWGALLGACRLHGNIELAEEVAEFLFRLEPGNSGRYVMMSN----IYAAAGQ 535

Query: 383 IDNAYNIFSNMVSRDL 398
            D+A  +   M  + L
Sbjct: 536 WDDARRVRGLMKEKGL 551



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 74/270 (27%), Positives = 137/270 (50%), Gaps = 20/270 (7%)

Query: 11  VVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPE 70
           V+   + +  YSK   +++A+ LF  +  R+ V++ +M+SG+ Q  +L EA ++F+ MP+
Sbjct: 215 VIMANAMLNAYSKARRVEDARHLFDQVSIRDNVTWTSMISGYCQVKKLHEAVQVFDMMPD 274

Query: 71  RNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVV---------GLIRNG-EL 120
           ++ ++WTA+I G    G    A +LFE+M  + V     ++V         GL+  G EL
Sbjct: 275 KDRIAWTALISGHEQNGEEDTALELFEQMLAKGVSPTPFVLVSALGACAKLGLVTRGKEL 334

Query: 121 N--EARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCR 178
           +    R+   S+P  N+   NA++  Y +C  M  A+ +F+ M ER+ ++W SM++G+  
Sbjct: 335 HCFILRRNIGSVPF-NIFIHNALVDMYSKCGDMMAAMAVFDWMPERDFISWNSMVTGFSH 393

Query: 179 AGEVEEGYCLFRRM----PRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCN 234
            G  ++   +F  M     R   V++ A++   + +G      L+   M+   D+G    
Sbjct: 394 NGLGKQSLAIFEEMLVAGVRPTHVTFLAVLTACSHSGLVSNGRLVLESME---DHGVEPR 450

Query: 235 VQSCNSMINGYIRFGRLEEAQNLFDTVPVR 264
            +   + I+   R  +LEEA      +P R
Sbjct: 451 AEHYAAFIDALGRNHQLEEATEFIKDLPSR 480


>gi|224117876|ref|XP_002317690.1| predicted protein [Populus trichocarpa]
 gi|222860755|gb|EEE98302.1| predicted protein [Populus trichocarpa]
          Length = 706

 Score =  295 bits (756), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 197/634 (31%), Positives = 326/634 (51%), Gaps = 71/634 (11%)

Query: 15  TSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEM--PERN 72
           +S I  Y+  G I++A+  F  M  ++ V +N M++G++Q G    A +LF++M   E  
Sbjct: 49  SSLIKLYADNGCIEDARRFFDKMIDKDCVLWNVMINGYVQCGESDSAIKLFKDMMSSEAK 108

Query: 73  VVSWT-AMICGLADAGRVCEARKLFEEMPERNVVSW-----NSMVVGLIRNGELNEARKV 126
             S T A +  ++ +  + E  +    +  R+ + +     N++V    +  +L +ARK+
Sbjct: 109 PDSVTFACVLSISCSEAMVEYGRQLHGLVVRSGLDFVPLVGNTLVTVYSKGRQLGDARKL 168

Query: 127 FNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNV----VTWTSM---------- 172
           F+ MP  +++ WN MI GYV+   M +A +LF EM    +    +T+TS           
Sbjct: 169 FDMMPQIDLVVWNRMIGGYVQNGFMDDASMLFNEMISAGIKPDSITFTSFLPSLAESSSL 228

Query: 173 -----ISGY-CRAGEVEEGYC-------------------LFRRMPRKNVVSWTAMIGGF 207
                I GY  R G + + Y                    +F    + ++V +TAMI G+
Sbjct: 229 KQIKEIHGYIVRHGVILDVYLNSALIDLYFKCRDAVMACKMFNLSTKFDIVIYTAMISGY 288

Query: 208 AWNGFHKESLLLF--IEMKGICDNGNNCN--VQSCNSM--------INGYIRFGRLEEAQ 255
             NG +K++L +F  +  K +  N    +  + +C  +        ++GYI    LEE  
Sbjct: 289 VLNGMNKDALEIFRWLLQKKMIPNALTFSSILPACAGLAAIKLGRELHGYIIKNELEE-- 346

Query: 256 NLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVE 315
                 PV      +++++ Y   G++  A+ +F  +  +DA+ W ++I+   Q+    E
Sbjct: 347 ----KCPVG-----SAIMNMYAKCGRLDLAHLIFGRISIKDAICWNSIITSFSQDGKPEE 397

Query: 316 ATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLIS 375
           A YLF +M   GV     T S    A      +  G++IH  ++K   ESDL   + LI+
Sbjct: 398 AIYLFRQMGMEGVKYDCVTVSAALSACANIPALHYGKEIHGFMIKGAFESDLFDMSALIN 457

Query: 376 MYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVT 435
           MYAKCG ++ A  +F+ M  ++ V+WNS++  + +HG   ++L +F +MLE G  P+ +T
Sbjct: 458 MYAKCGKLNIARLVFNLMQEKNEVAWNSIIAAYGYHGYLADSLALFHNMLEEGIQPDHIT 517

Query: 436 FLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRL 495
           FL ILS+C HAG V  G   F  M + Y I    EHY  M +L GRAG + EA E +  +
Sbjct: 518 FLTILSSCGHAGQVEDGVRYFRCMTEEYGIPAQMEHYACMADLFGRAGHLDEAFEVITSM 577

Query: 496 PFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEE 555
           PF P   +WG LLGAC    GN E+AE A++ LL+L+P N+  +++L ++ A +G+    
Sbjct: 578 PFPPAASVWGTLLGACRV-HGNVELAEVASRYLLDLEPKNSGYYLLLTHVLADAGKWRSV 636

Query: 556 HKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGD 589
           HK++  M  +GV+KVPGCSW+  N    +F + D
Sbjct: 637 HKIQHLMKERGVQKVPGCSWIEVNNTTCVFFAAD 670



 Score =  115 bits (289), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 84/323 (26%), Positives = 152/323 (47%), Gaps = 17/323 (5%)

Query: 146 VECCM------MGEAI--VLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNV 197
           ++CC       +G+ I  ++ E   + ++   +S+I  Y   G +E+    F +M  K+ 
Sbjct: 17  IKCCTGLNNVRLGKVIQDMILEMGFDLDMFVASSLIKLYADNGCIEDARRFFDKMIDKDC 76

Query: 198 VSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQ-----SCNSMINGYIRFGRLE 252
           V W  MI G+   G    ++ LF +M       ++         SC+  +  Y R     
Sbjct: 77  VLWNVMINGYVQCGESDSAIKLFKDMMSSEAKPDSVTFACVLSISCSEAMVEYGRQLHGL 136

Query: 253 EAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNEL 312
             ++  D VP    +   +++  Y    Q+ +A  LF  MP  D V W  MI G VQN  
Sbjct: 137 VVRSGLDFVP----LVGNTLVTVYSKGRQLGDARKLFDMMPQIDLVVWNRMIGGYVQNGF 192

Query: 313 FVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENC 372
             +A+ LF EM + G+ P + TF+    +   ++++   ++IH  +++     D+ L + 
Sbjct: 193 MDDASMLFNEMISAGIKPDSITFTSFLPSLAESSSLKQIKEIHGYIVRHGVILDVYLNSA 252

Query: 373 LISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPN 432
           LI +Y KC     A  +F+     D+V + +M+ G+  +G+  + L++F  +L+    PN
Sbjct: 253 LIDLYFKCRDAVMACKMFNLSTKFDIVIYTAMISGYVLNGMNKDALEIFRWLLQKKMIPN 312

Query: 433 SVTFLGILSACSHAGLVSRGWEL 455
           ++TF  IL AC+    +  G EL
Sbjct: 313 ALTFSSILPACAGLAAIKLGREL 335



 Score = 78.6 bits (192), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 47/188 (25%), Positives = 92/188 (48%), Gaps = 2/188 (1%)

Query: 323 MRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGV 382
           M   GV P   TF  +        N+ LG+ I  ++++   + D+ + + LI +YA  G 
Sbjct: 1   MLGCGVFPDKYTFPPVIKCCTGLNNVRLGKVIQDMILEMGFDLDMFVASSLIKLYADNGC 60

Query: 383 IDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSA 442
           I++A   F  M+ +D V WN M+ G+   G ++  +K+F+ M+ S   P+SVTF  +LS 
Sbjct: 61  IEDARRFFDKMIDKDCVLWNVMINGYVQCGESDSAIKLFKDMMSSEAKPDSVTFACVLSI 120

Query: 443 CSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHR 502
                +V  G +L + +     +   P    +++ +  +  ++ +A +    +P + D  
Sbjct: 121 SCSEAMVEYGRQL-HGLVVRSGLDFVPLVGNTLVTVYSKGRQLGDARKLFDMMP-QIDLV 178

Query: 503 IWGALLGA 510
           +W  ++G 
Sbjct: 179 VWNRMIGG 186


>gi|15237421|ref|NP_197188.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174141|sp|Q9LFL5.1|PP390_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g16860
 gi|9755687|emb|CAC01699.1| putative protein [Arabidopsis thaliana]
 gi|332004967|gb|AED92350.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 850

 Score =  295 bits (756), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 190/592 (32%), Positives = 302/592 (51%), Gaps = 43/592 (7%)

Query: 41  NVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMP 100
           NV   NA+++ + +   LS+AR++F+EM   +VVSW ++I   A  G+   A ++F  M 
Sbjct: 161 NVFVGNALVAMYSRCRSLSDARKVFDEMSVWDVVSWNSIIESYAKLGKPKVALEMFSRMT 220

Query: 101 ER------NVVSWNSM----VVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCM 150
                   N+   N +     +G    G+      V + M I+N+   N ++  Y +C M
Sbjct: 221 NEFGCRPDNITLVNVLPPCASLGTHSLGKQLHCFAVTSEM-IQNMFVGNCLVDMYAKCGM 279

Query: 151 MGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMP----RKNVVSWTAMIGG 206
           M EA  +F  M  ++VV+W +M++GY + G  E+   LF +M     + +VV+W+A I G
Sbjct: 280 MDEANTVFSNMSVKDVVSWNAMVAGYSQIGRFEDAVRLFEKMQEEKIKMDVVTWSAAISG 339

Query: 207 FAWNGFHKESLLLFIEMKGIC----DNGNNCNVQSCNSMINGYIRFGRL---EEAQNLFD 259
           +A  G   E+L       G+C     +G   N  +  S+++G    G L   +E      
Sbjct: 340 YAQRGLGYEAL-------GVCRQMLSSGIKPNEVTLISVLSGCASVGALMHGKEIHCYAI 392

Query: 260 TVPVR--------DEISWTSMIDGYLSVGQVSNAYYLFHNM--PDRDAVAWTAMISGLVQ 309
             P+         + +    +ID Y    +V  A  +F ++   +RD V WT MI G  Q
Sbjct: 393 KYPIDLRKNGHGDENMVINQLIDMYAKCKKVDTARAMFDSLSPKERDVVTWTVMIGGYSQ 452

Query: 310 NELFVEATYLFMEMRAHGVP--PLNATFSVLFGAAGATANIDLGRQIHCVLMKTESES-D 366
           +    +A  L  EM        P   T S    A  + A + +G+QIH   ++ +  +  
Sbjct: 453 HGDANKALELLSEMFEEDCQTRPNAFTISCALVACASLAALRIGKQIHAYALRNQQNAVP 512

Query: 367 LILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLE 426
           L + NCLI MYAKCG I +A  +F NM++++ V+W S++ G+  HG   E L +F+ M  
Sbjct: 513 LFVSNCLIDMYAKCGSISDARLVFDNMMAKNEVTWTSLMTGYGMHGYGEEALGIFDEMRR 572

Query: 427 SGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIK 486
            G   + VT L +L ACSH+G++ +G E FN M  V+ + PGPEHY  +++LLGRAG++ 
Sbjct: 573 IGFKLDGVTLLVVLYACSHSGMIDQGMEYFNRMKTVFGVSPGPEHYACLVDLLGRAGRLN 632

Query: 487 EAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIY 546
            A   +  +P EP   +W A L  C    G  E+ E+AA+++ EL   +  ++ +L N+Y
Sbjct: 633 AALRLIEEMPMEPPPVVWVAFLSCCRI-HGKVELGEYAAEKITELASNHDGSYTLLSNLY 691

Query: 547 AASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
           A +GR  +  ++R  M  KGV+K PGCSW+    G   F  GDK      EI
Sbjct: 692 ANAGRWKDVTRIRSLMRHKGVKKRPGCSWVEGIKGTTTFFVGDKTHPHAKEI 743



 Score =  162 bits (410), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 145/530 (27%), Positives = 241/530 (45%), Gaps = 59/530 (11%)

Query: 27  IDEAKALFQLMPQRNVVSYNA---MLSGFLQNGRLSEARRLFEEMPERN--VVSWTAMIC 81
           I + K + Q +    +++ N    ++S ++  G LS A  L    P  +  V  W ++I 
Sbjct: 41  ISQVKLIHQKLLSFGILTLNLTSHLISTYISVGCLSHAVSLLRRFPPSDAGVYHWNSLIR 100

Query: 82  GLADAGRVCEARKLFEEM------PERNVVSWNSMVVGLI---RNGELNEARKVFNSMPI 132
              D G   +   LF  M      P+     +     G I   R GE   A  +     I
Sbjct: 101 SYGDNGCANKCLYLFGLMHSLSWTPDNYTFPFVFKACGEISSVRCGESAHALSLVTGF-I 159

Query: 133 KNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRM 192
            NV   NA++A Y  C  + +A  +F+EM   +VV+W S+I  Y + G+ +    +F RM
Sbjct: 160 SNVFVGNALVAMYSRCRSLSDARKVFDEMSVWDVVSWNSIIESYAKLGKPKVALEMFSRM 219

Query: 193 P-----RKNVVSWTAMIGGFAWNGFHK--ESLLLFIEMKGICDNGNNCNVQSCNSMINGY 245
                 R + ++   ++   A  G H   + L  F     +       N+   N +++ Y
Sbjct: 220 TNEFGCRPDNITLVNVLPPCASLGTHSLGKQLHCFAVTSEMIQ-----NMFVGNCLVDMY 274

Query: 246 IRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDR----DAVAWT 301
            + G ++EA  +F  + V+D +SW +M+ GY  +G+  +A  LF  M +     D V W+
Sbjct: 275 AKCGMMDEANTVFSNMSVKDVVSWNAMVAGYSQIGRFEDAVRLFEKMQEEKIKMDVVTWS 334

Query: 302 AMISGLVQNELFVEATYLFMEMRAHGVPPLNATF-SVLFGAAGATANIDLGRQIHCVLMK 360
           A ISG  Q  L  EA  +  +M + G+ P   T  SVL G A   A +  G++IHC  +K
Sbjct: 335 AAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTLISVLSGCASVGALMH-GKEIHCYAIK 393

Query: 361 T--------ESESDLILENCLISMYAKCGVIDNAYNIFSNMV--SRDLVSWNSMVMGFSH 410
                      + ++++ N LI MYAKC  +D A  +F ++    RD+V+W  M+ G+S 
Sbjct: 394 YPIDLRKNGHGDENMVI-NQLIDMYAKCKKVDTARAMFDSLSPKERDVVTWTVMIGGYSQ 452

Query: 411 HGLANETLKVFESMLESG--THPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPG 468
           HG AN+ L++   M E    T PN+ T    L AC+    +  G ++    + +   Q  
Sbjct: 453 HGDANKALELLSEMFEEDCQTRPNAFTISCALVACASLAALRIGKQIH--AYALRNQQNA 510

Query: 469 PEHYVS--MINLLGRAGKIKEAEEFVLRLPFE----PDHRIWGALLGACG 512
              +VS  +I++  + G I +A     RL F+     +   W +L+   G
Sbjct: 511 VPLFVSNCLIDMYAKCGSISDA-----RLVFDNMMAKNEVTWTSLMTGYG 555



 Score =  112 bits (280), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 86/301 (28%), Positives = 145/301 (48%), Gaps = 27/301 (8%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPER----NV 73
           +  Y+K G +DEA  +F  M  ++VVS+NAM++G+ Q GR  +A RLFE+M E     +V
Sbjct: 271 VDMYAKCGMMDEANTVFSNMSVKDVVSWNAMVAGYSQIGRFEDAVRLFEKMQEEKIKMDV 330

Query: 74  VSWTAMICGLADAGRVCEA----RKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNS 129
           V+W+A I G A  G   EA    R++     + N V+  S++ G    G L   +++ + 
Sbjct: 331 VTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTLISVLSGCASVGALMHGKEI-HC 389

Query: 130 MPIKNVISW------------NAMIAGYVECCMMGEAIVLFEEM--EERNVVTWTSMISG 175
             IK  I              N +I  Y +C  +  A  +F+ +  +ER+VVTWT MI G
Sbjct: 390 YAIKYPIDLRKNGHGDENMVINQLIDMYAKCKKVDTARAMFDSLSPKERDVVTWTVMIGG 449

Query: 176 YCRAGEVEEGYCLFRRMPRKNVVS----WTAMIGGFAWNGFHKESLLLFIEMKGICDNGN 231
           Y + G+  +   L   M  ++  +    +T      A        +   I    + +  N
Sbjct: 450 YSQHGDANKALELLSEMFEEDCQTRPNAFTISCALVACASLAALRIGKQIHAYALRNQQN 509

Query: 232 NCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHN 291
              +   N +I+ Y + G + +A+ +FD +  ++E++WTS++ GY   G    A  +F  
Sbjct: 510 AVPLFVSNCLIDMYAKCGSISDARLVFDNMMAKNEVTWTSLMTGYGMHGYGEEALGIFDE 569

Query: 292 M 292
           M
Sbjct: 570 M 570



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 110/434 (25%), Positives = 192/434 (44%), Gaps = 34/434 (7%)

Query: 40  RNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEM 99
           +N+   N ++  + + G + EA  +F  M  ++VVSW AM+ G +  GR  +A +LFE+M
Sbjct: 262 QNMFVGNCLVDMYAKCGMMDEANTVFSNMSVKDVVSWNAMVAGYSQIGRFEDAVRLFEKM 321

Query: 100 PER----NVVSWNSMVVGLIRNGELNEA----RKVFNSMPIKNVISWNAMIAG------- 144
            E     +VV+W++ + G  + G   EA    R++ +S    N ++  ++++G       
Sbjct: 322 QEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTLISVLSGCASVGAL 381

Query: 145 ----YVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRK--NVV 198
                + C  +   I L +       +    +I  Y +  +V+    +F  +  K  +VV
Sbjct: 382 MHGKEIHCYAIKYPIDLRKNGHGDENMVINQLIDMYAKCKKVDTARAMFDSLSPKERDVV 441

Query: 199 SWTAMIGGFAWNGFHKESLLLFIEM-KGICDNGNN-----CNVQSCNSMINGYIRFGRLE 252
           +WT MIGG++ +G   ++L L  EM +  C    N     C + +C S+    +R G+  
Sbjct: 442 TWTVMIGGYSQHGDANKALELLSEMFEEDCQTRPNAFTISCALVACASL--AALRIGKQI 499

Query: 253 EAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNEL 312
            A  L +            +ID Y   G +S+A  +F NM  ++ V WT++++G   +  
Sbjct: 500 HAYALRNQQNAVPLFVSNCLIDMYAKCGSISDARLVFDNMMAKNEVTWTSLMTGYGMHGY 559

Query: 313 FVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILEN- 371
             EA  +F EMR  G      T  V+  A   +  ID G + +   MKT        E+ 
Sbjct: 560 GEEALGIFDEMRRIGFKLDGVTLLVVLYACSHSGMIDQGME-YFNRMKTVFGVSPGPEHY 618

Query: 372 -CLISMYAKCGVIDNAYNIFSNM-VSRDLVSWNSMVMGFSHHGLANETLKVFESMLE-SG 428
            CL+ +  + G ++ A  +   M +    V W + +     HG         E + E + 
Sbjct: 619 ACLVDLLGRAGRLNAALRLIEEMPMEPPPVVWVAFLSCCRIHGKVELGEYAAEKITELAS 678

Query: 429 THPNSVTFLGILSA 442
            H  S T L  L A
Sbjct: 679 NHDGSYTLLSNLYA 692


>gi|414587348|tpg|DAA37919.1| TPA: hypothetical protein ZEAMMB73_411767 [Zea mays]
          Length = 920

 Score =  295 bits (756), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 186/623 (29%), Positives = 311/623 (49%), Gaps = 51/623 (8%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMP----ERNV 73
           I  Y   G    A+ +F  M   + V++N ++SG  Q G    A ++F+EM       + 
Sbjct: 186 IALYLGFGSFKLAERVFCDMLFCDRVTFNTLISGHAQCGHGECALQIFDEMQLSGLRPDC 245

Query: 74  VSWTAMICGLADAGRVCEARKLFEEMPER----NVVSWNSMVVGLIRNGELNEARKVFNS 129
           V+  +++   A  G + + ++L   + +     + ++  S++   ++ G++  A  +FN 
Sbjct: 246 VTVASLLAACASVGDLQKGKQLHSYLLKAGMSFDYITEGSLLDLYVKCGDIETAHDIFNL 305

Query: 130 MPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEER----NVVTWTSMISGYCRAGEVEEG 185
               NV+ WN M+  Y +   + ++  +F +M+      N  T+  ++      G++E G
Sbjct: 306 GDRTNVVLWNLMLVAYGQISDLAKSFEIFGQMQATGIHPNKFTYPCILRTCTCTGQIELG 365

Query: 186 -------------------------YCLFR----------RMPRKNVVSWTAMIGGFAWN 210
                                    Y  +R           + +++VVSWT+MI G+  +
Sbjct: 366 EQIHSLSIKNGFESDMYVSGVLIDMYSKYRCLDKARKILEMLEKRDVVSWTSMIAGYVQH 425

Query: 211 GFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGY--IRFGRLEEAQNLFDTVPVRDEIS 268
            F +E+L  F EM+      +N  + S  S   G   +R G L+    ++ +    D   
Sbjct: 426 DFCEEALATFKEMQDCGVWPDNIGLASAASACAGIKAMRQG-LQIHARVYVSGYAADISI 484

Query: 269 WTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGV 328
           W ++++ Y   G+   A+ LF  +  +D + W  +ISG  Q+ L+ +A  +FM+M   G 
Sbjct: 485 WNTLVNLYARCGRSEEAFSLFREIDHKDEITWNGLISGFGQSRLYEQALMVFMKMSQAGA 544

Query: 329 PPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYN 388
                TF     A    A+I  G+Q+H   +KT   S+  + N LIS+Y KCG I++A  
Sbjct: 545 KYNVFTFISAISALANLADIKQGKQVHGRAVKTGHTSETEVANALISLYGKCGSIEDAKM 604

Query: 389 IFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGL 448
           IFS M  R+ VSWN+++   S HG   E L +F+ M + G  PN VTF+G+L+ACSH GL
Sbjct: 605 IFSEMSLRNEVSWNTIITSCSQHGRGLEALDLFDQMKQEGLKPNDVTFIGVLAACSHVGL 664

Query: 449 VSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALL 508
           V  G   F +M +VY + P P+HY  ++++LGRAG++  A  FV  +P   +  IW  LL
Sbjct: 665 VEEGLSYFKSMSNVYGLNPIPDHYACVVDILGRAGQLDRARRFVDEMPITANAMIWRTLL 724

Query: 509 GACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVR 568
            AC     N EI E AAK LLEL+P ++ ++V+L N YA +G+     ++R  M  +G+R
Sbjct: 725 SACKV-HKNIEIGELAAKHLLELEPHDSASYVLLSNAYAVTGKWANRDQVRKMMKDRGIR 783

Query: 569 KVPGCSWLMRNGGIQMFLSGDKI 591
           K PG SW+     +  F  GD++
Sbjct: 784 KEPGRSWIEVKNAVHAFFVGDRL 806



 Score =  160 bits (404), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 129/546 (23%), Positives = 240/546 (43%), Gaps = 58/546 (10%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEM------PER 71
           I  Y+K G + +A+ +F+ +  R+ VS+ AMLSG+ Q G   EA RL+ +M      P  
Sbjct: 85  IDLYAKNGLVWQARQVFKELSSRDHVSWVAMLSGYAQRGLGKEAFRLYSQMHWTAVIPTP 144

Query: 72  NVVSWTAMIC---GLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFN 128
            V+S     C    L   GR+  A+   +       V  N+++   +  G    A +VF 
Sbjct: 145 YVLSSVLSACTKGKLFAQGRMIHAQVYKQAFCSETFVG-NALIALYLGFGSFKLAERVFC 203

Query: 129 SMPIKNVISWNAMIAGYVECCMMGEAIVLFEEME-------------------------- 162
            M   + +++N +I+G+ +C     A+ +F+EM+                          
Sbjct: 204 DMLFCDRVTFNTLISGHAQCGHGECALQIFDEMQLSGLRPDCVTVASLLAACASVGDLQK 263

Query: 163 -------------ERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAW 209
                          + +T  S++  Y + G++E  + +F    R NVV W  M+  +  
Sbjct: 264 GKQLHSYLLKAGMSFDYITEGSLLDLYVKCGDIETAHDIFNLGDRTNVVLWNLMLVAYGQ 323

Query: 210 NGFHKESLLLFIEMKGICDNGNN----CNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRD 265
                +S  +F +M+    + N     C +++C     G I  G    + ++ +      
Sbjct: 324 ISDLAKSFEIFGQMQATGIHPNKFTYPCILRTCTC--TGQIELGEQIHSLSIKNGFESDM 381

Query: 266 EISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRA 325
            +S   +ID Y     +  A  +   +  RD V+WT+MI+G VQ++   EA   F EM+ 
Sbjct: 382 YVSGV-LIDMYSKYRCLDKARKILEMLEKRDVVSWTSMIAGYVQHDFCEEALATFKEMQD 440

Query: 326 HGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDN 385
            GV P N   +    A      +  G QIH  +  +   +D+ + N L+++YA+CG  + 
Sbjct: 441 CGVWPDNIGLASAASACAGIKAMRQGLQIHARVYVSGYAADISIWNTLVNLYARCGRSEE 500

Query: 386 AYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSH 445
           A+++F  +  +D ++WN ++ GF    L  + L VF  M ++G   N  TF+  +SA ++
Sbjct: 501 AFSLFREIDHKDEITWNGLISGFGQSRLYEQALMVFMKMSQAGAKYNVFTFISAISALAN 560

Query: 446 AGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWG 505
              + +G ++              E   ++I+L G+ G I++A+     +    +   W 
Sbjct: 561 LADIKQGKQVHGRAVKTGHTSE-TEVANALISLYGKCGSIEDAKMIFSEMSLR-NEVSWN 618

Query: 506 ALLGAC 511
            ++ +C
Sbjct: 619 TIITSC 624



 Score =  149 bits (375), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 119/473 (25%), Positives = 218/473 (46%), Gaps = 29/473 (6%)

Query: 84  ADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIA 143
           A  G V +AR++F+E+  R+ VSW +M+ G  + G   EA ++++ M    VI    +++
Sbjct: 89  AKNGLVWQARQVFKELSSRDHVSWVAMLSGYAQRGLGKEAFRLYSQMHWTAVIPTPYVLS 148

Query: 144 GYVECCMMGEAIV--------LFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRK 195
             +  C  G+           ++++          ++I+ Y   G  +    +F  M   
Sbjct: 149 SVLSACTKGKLFAQGRMIHAQVYKQAFCSETFVGNALIALYLGFGSFKLAERVFCDMLFC 208

Query: 196 NVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQ 255
           + V++  +I G A  G  + +L +F EM+    +G   +  +  S++      G L++ +
Sbjct: 209 DRVTFNTLISGHAQCGHGECALQIFDEMQL---SGLRPDCVTVASLLAACASVGDLQKGK 265

Query: 256 NLFDTVPVR----DEISWTSMIDGYLSVGQVSNAYYLFHNMPDR-DAVAWTAMISGLVQN 310
            L   +       D I+  S++D Y+  G +  A+ +F N+ DR + V W  M+    Q 
Sbjct: 266 QLHSYLLKAGMSFDYITEGSLLDLYVKCGDIETAHDIF-NLGDRTNVVLWNLMLVAYGQI 324

Query: 311 ELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILE 370
               ++  +F +M+A G+ P   T+  +      T  I+LG QIH + +K   ESD+ + 
Sbjct: 325 SDLAKSFEIFGQMQATGIHPNKFTYPCILRTCTCTGQIELGEQIHSLSIKNGFESDMYVS 384

Query: 371 NCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTH 430
             LI MY+K   +D A  I   +  RD+VSW SM+ G+  H    E L  F+ M + G  
Sbjct: 385 GVLIDMYSKYRCLDKARKILEMLEKRDVVSWTSMIAGYVQHDFCEEALATFKEMQDCGVW 444

Query: 431 PNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEE 490
           P+++      SAC+    + +G ++   ++ V         + +++NL  R G+ +EA  
Sbjct: 445 PDNIGLASAASACAGIKAMRQGLQIHARVY-VSGYAADISIWNTLVNLYARCGRSEEA-- 501

Query: 491 FVLRLPFEPDHR---IWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHV 540
               L  E DH+    W  L+   GF  G + + E A    +++    A  +V
Sbjct: 502 --FSLFREIDHKDEITWNGLIS--GF--GQSRLYEQALMVFMKMSQAGAKYNV 548



 Score = 99.0 bits (245), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 71/245 (28%), Positives = 117/245 (47%), Gaps = 10/245 (4%)

Query: 272 MIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPL 331
           +ID Y   G V  A  +F  +  RD V+W AM+SG  Q  L  EA  L+ +M    V P 
Sbjct: 84  LIDLYAKNGLVWQARQVFKELSSRDHVSWVAMLSGYAQRGLGKEAFRLYSQMHWTAVIPT 143

Query: 332 NATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFS 391
               S +  A         GR IH  + K    S+  + N LI++Y   G    A  +F 
Sbjct: 144 PYVLSSVLSACTKGKLFAQGRMIHAQVYKQAFCSETFVGNALIALYLGFGSFKLAERVFC 203

Query: 392 NMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSR 451
           +M+  D V++N+++ G +  G     L++F+ M  SG  P+ VT   +L+AC+  G + +
Sbjct: 204 DMLFCDRVTFNTLISGHAQCGHGECALQIFDEMQLSGLRPDCVTVASLLAACASVGDLQK 263

Query: 452 GWELFNAMFDVYKIQPGPE-HYV---SMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGAL 507
           G +L +     Y ++ G    Y+   S+++L  + G I+ A + +  L    +  +W  +
Sbjct: 264 GKQLHS-----YLLKAGMSFDYITEGSLLDLYVKCGDIETAHD-IFNLGDRTNVVLWNLM 317

Query: 508 LGACG 512
           L A G
Sbjct: 318 LVAYG 322



 Score = 65.9 bits (159), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 44/147 (29%), Positives = 72/147 (48%), Gaps = 5/147 (3%)

Query: 353 QIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHG 412
           +IH   +     +D ++ N LI +YAK G++  A  +F  + SRD VSW +M+ G++  G
Sbjct: 64  EIHATSVVRGLGADRLIGNLLIDLYAKNGLVWQARQVFKELSSRDHVSWVAMLSGYAQRG 123

Query: 413 LANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHY 472
           L  E  +++  M  +   P       +LSAC+   L ++G  + +A   VYK     E +
Sbjct: 124 LGKEAFRLYSQMHWTAVIPTPYVLSSVLSACTKGKLFAQG-RMIHA--QVYKQAFCSETF 180

Query: 473 V--SMINLLGRAGKIKEAEEFVLRLPF 497
           V  ++I L    G  K AE     + F
Sbjct: 181 VGNALIALYLGFGSFKLAERVFCDMLF 207


>gi|147864534|emb|CAN78385.1| hypothetical protein VITISV_017238 [Vitis vinifera]
          Length = 643

 Score =  295 bits (756), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 159/419 (37%), Positives = 239/419 (57%), Gaps = 8/419 (1%)

Query: 171 SMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNG 230
           S+I  Y    ++     LF     ++VVSW AMI G+   G    + ++F  M  +C + 
Sbjct: 40  SLIHLYANGKDLGAAKQLFSLCSDRDVVSWNAMIDGYVKRGEMGHTRMVFDRM--VCRD- 96

Query: 231 NNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFH 290
               V S N++INGY   G+++EA+ LFD +P R+ +SW SM+ G++  G V  A+ LF 
Sbjct: 97  ----VISWNTIINGYAIVGKIDEAKRLFDEMPERNLVSWNSMLSGFVKCGNVEEAFGLFS 152

Query: 291 NMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDL 350
            MP RD V+W +M++   Q     EA  LF +MRA GV P  AT   L  A      +D 
Sbjct: 153 EMPCRDVVSWNSMLACYAQCGKPNEALALFDQMRAVGVKPTEATVVSLLSACAHLGALDK 212

Query: 351 GRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSH 410
           G  +H  +     E + I+   L+ MYAKCG I  A  +F+ M S+D+++WN+++ G + 
Sbjct: 213 GLHLHTYINDNRIEVNSIVGTALVDMYAKCGKISLATQVFNAMESKDVLAWNTIIAGMAI 272

Query: 411 HGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPE 470
           HG   E  ++F+ M E+   PN +TF+ +LSACSHAG+V  G +L + M   Y I+P  E
Sbjct: 273 HGHVKEAQQLFKEMKEASVEPNDITFVAMLSACSHAGMVDEGQKLLDCMSSSYGIEPKVE 332

Query: 471 HYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLE 530
           HY  +I+LL RAG ++EA E +  +P EP+    GALLG C    GN E+ E   KRL+ 
Sbjct: 333 HYDCVIDLLARAGLLEEAMELIGTMPMEPNPSALGALLGGCRI-HGNFELGEMVGKRLIN 391

Query: 531 LDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGD 589
           L P ++  +++L NIYAA+ +  +  K+R  M + G+ KVPG S +   G +  F++GD
Sbjct: 392 LQPCHSGRYILLSNIYAAAKKWDDARKVRNLMKVNGISKVPGVSVIELKGMVHRFVAGD 450



 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 103/338 (30%), Positives = 167/338 (49%), Gaps = 48/338 (14%)

Query: 14  LTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNV 73
           + S I  Y+    +  AK LF L   R+VVS+NAM+ G+++ G +   R +F+ M  R+V
Sbjct: 38  VNSLIHLYANGKDLGAAKQLFSLCSDRDVVSWNAMIDGYVKRGEMGHTRMVFDRMVCRDV 97

Query: 74  VSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIK 133
           +SW  +I G A  G++ EA++LF+EMPERN+VSWNSM+ G ++ G + EA  +F+ MP +
Sbjct: 98  ISWNTIINGYAIVGKIDEAKRLFDEMPERNLVSWNSMLSGFVKCGNVEEAFGLFSEMPCR 157

Query: 134 NVISWNAMIAGYVECCMMGEAIVLFEEME------------------------------- 162
           +V+SWN+M+A Y +C    EA+ LF++M                                
Sbjct: 158 DVVSWNSMLACYAQCGKPNEALALFDQMRAVGVKPTEATVVSLLSACAHLGALDKGLHLH 217

Query: 163 --------ERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHK 214
                   E N +  T+++  Y + G++     +F  M  K+V++W  +I G A +G  K
Sbjct: 218 TYINDNRIEVNSIVGTALVDMYAKCGKISLATQVFNAMESKDVLAWNTIIAGMAIHGHVK 277

Query: 215 ESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEIS-----W 269
           E+  LF EMK      N+       +M++     G ++E Q L D +     I      +
Sbjct: 278 EAQQLFKEMKEASVEPNDITFV---AMLSACSHAGMVDEGQKLLDCMSSSYGIEPKVEHY 334

Query: 270 TSMIDGYLSVGQVSNAYYLFHNMP-DRDAVAWTAMISG 306
             +ID     G +  A  L   MP + +  A  A++ G
Sbjct: 335 DCVIDLLARAGLLEEAMELIGTMPMEPNPSALGALLGG 372



 Score = 88.6 bits (218), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 75/240 (31%), Positives = 121/240 (50%), Gaps = 22/240 (9%)

Query: 1   MSERNHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSE 60
           M ERN     +V   S ++ + K G ++EA  LF  MP R+VVS+N+ML+ + Q G+ +E
Sbjct: 123 MPERN-----LVSWNSMLSGFVKCGNVEEAFGLFSEMPCRDVVSWNSMLACYAQCGKPNE 177

Query: 61  ARRLFEEMPERNVVSWTAMICGLADA----GRVCEARKLF----EEMPERNVVSWNSMVV 112
           A  LF++M    V    A +  L  A    G + +   L     +   E N +   ++V 
Sbjct: 178 ALALFDQMRAVGVKPTEATVVSLLSACAHLGALDKGLHLHTYINDNRIEVNSIVGTALVD 237

Query: 113 GLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNV----VT 168
              + G+++ A +VFN+M  K+V++WN +IAG      + EA  LF+EM+E +V    +T
Sbjct: 238 MYAKCGKISLATQVFNAMESKDVLAWNTIIAGMAIHGHVKEAQQLFKEMKEASVEPNDIT 297

Query: 169 WTSMISGYCRAGEVEEGYCLFRRMP-----RKNVVSWTAMIGGFAWNGFHKESLLLFIEM 223
           + +M+S    AG V+EG  L   M         V  +  +I   A  G  +E++ L   M
Sbjct: 298 FVAMLSACSHAGMVDEGQKLLDCMSSSYGIEPKVEHYDCVIDLLARAGLLEEAMELIGTM 357



 Score = 52.4 bits (124), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 48/204 (23%), Positives = 90/204 (44%), Gaps = 11/204 (5%)

Query: 334 TFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNM 393
           T+  +  A   ++    G  +H  ++K+  E D  + N LI +YA    +  A  +FS  
Sbjct: 2   TYPFVIKACNESSVTWFGLLVHTHVVKSGFECDSYIVNSLIHLYANGKDLGAAKQLFSLC 61

Query: 394 VSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGW 453
             RD+VSWN+M+ G+   G    T  VF+ M+      + +++  I++  +  G +    
Sbjct: 62  SDRDVVSWNAMIDGYVKRGEMGHTRMVFDRMVCR----DVISWNTIINGYAIVGKIDEAK 117

Query: 454 ELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGF 513
            LF+ M +   +      + SM++   + G ++EA      +P   D   W ++L     
Sbjct: 118 RLFDEMPERNLVS-----WNSMLSGFVKCGNVEEAFGLFSEMPCR-DVVSWNSMLACYAQ 171

Query: 514 C-EGNAEIAEHAAKRLLELDPLNA 536
           C + N  +A     R + + P  A
Sbjct: 172 CGKPNEALALFDQMRAVGVKPTEA 195


>gi|224141765|ref|XP_002324235.1| predicted protein [Populus trichocarpa]
 gi|222865669|gb|EEF02800.1| predicted protein [Populus trichocarpa]
          Length = 736

 Score =  295 bits (755), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 203/644 (31%), Positives = 305/644 (47%), Gaps = 87/644 (13%)

Query: 7   PKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQ------NGRLSE 60
           P   +VH   S+T  S    +   K +   + +  + + +  LS  ++      +G LS 
Sbjct: 21  PPYKLVHDHPSLTLLSNCKTLQTLKQIHSQIIKTGLHNTHFALSKLIEFCAVSPHGDLSY 80

Query: 61  ARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMP-------------------- 100
           A  LF+ +   N V W  MI GL+ +     A + +  M                     
Sbjct: 81  ALSLFKTIRNPNHVIWNHMIRGLSSSESPFLALEYYVHMISSGTEPNEYTFPSIFKSCTK 140

Query: 101 -------------------ERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAM 141
                              E N     S++    +NGEL  AR VF+   +++ +S+ A+
Sbjct: 141 IRGAHEGKQVHAHVLKLGLEHNAFVHTSLINMYAQNGELVNARLVFDKSSMRDAVSFTAL 200

Query: 142 IAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPR----KNV 197
           I GY     + EA  LF+E+  R+VV+W +MISGY ++G VEE    F  M R     NV
Sbjct: 201 ITGYASKGFLDEARELFDEIPVRDVVSWNAMISGYAQSGRVEEAMAFFEEMRRAKVTPNV 260

Query: 198 VSWTAMIGGFAWNGFHKESLLLFIEMKG-ICDNGNNCNVQSCNSMINGYIRFGRLEEAQN 256
            +  +++   A +G    SL L   ++  I D G   N++  N +I+ Y++ G LEEA N
Sbjct: 261 STMLSVLSACAQSG---SSLQLGNWVRSWIEDRGLGSNIRLVNGLIDMYVKCGDLEEASN 317

Query: 257 LFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEA 316
           LF+ +  ++ +SW  MI GY  +                                 + EA
Sbjct: 318 LFEKIQDKNVVSWNVMIGGYTHMS-------------------------------CYKEA 346

Query: 317 TYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKT--ESESDLILENCLI 374
             LF  M    + P + TF  +  A      +DLG+ +H  + K     ++ + L   LI
Sbjct: 347 LGLFRRMMQSNIDPNDVTFLSILPACANLGALDLGKWVHAYVDKNMKSMKNTVALWTSLI 406

Query: 375 SMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSV 434
            MYAKCG +  A  IF  M ++ L +WN+M+ GF+ HG  +  L +F  M   G  P+ +
Sbjct: 407 DMYAKCGDLAVAKRIFDCMNTKSLATWNAMISGFAMHGHTDTALGLFSRMTSEGFVPDDI 466

Query: 435 TFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLR 494
           TF+G+L+AC HAGL+S G   F++M   YK+ P   HY  MI+L GRAG   EAE  V  
Sbjct: 467 TFVGVLTACKHAGLLSLGRRYFSSMIQDYKVSPKLPHYGCMIDLFGRAGLFDEAETLVKN 526

Query: 495 LPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVE 554
           +  +PD  IW +LLGAC       E+AE  AK L EL+P N  A+V+L NIYA +GR  +
Sbjct: 527 MEMKPDGAIWCSLLGACRI-HRRIELAESVAKHLFELEPENPSAYVLLSNIYAGAGRWED 585

Query: 555 EHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
             K+R  +    ++KVPGCS +  +  +  FL GDK+  Q  EI
Sbjct: 586 VAKIRTRLNDNRMKKVPGCSSIEVDSVVHEFLVGDKVHPQSNEI 629



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 135/503 (26%), Positives = 227/503 (45%), Gaps = 59/503 (11%)

Query: 12  VHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPER 71
           V  T+ IT Y+ +GF+DEA+ LF  +P R+VVS+NAM+SG+ Q+GR+ EA   FEEM   
Sbjct: 195 VSFTALITGYASKGFLDEARELFDEIPVRDVVSWNAMISGYAQSGRVEEAMAFFEEMRRA 254

Query: 72  ----NVVSWTAMICGLADAGRVCEARKLFEE-MPERNVVSWNSMVVGLI----RNGELNE 122
               NV +  +++   A +G   +        + +R + S   +V GLI    + G+L E
Sbjct: 255 KVTPNVSTMLSVLSACAQSGSSLQLGNWVRSWIEDRGLGSNIRLVNGLIDMYVKCGDLEE 314

Query: 123 ARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNV----VTWTSMISGYCR 178
           A  +F  +  KNV+SWN MI GY       EA+ LF  M + N+    VT+ S++     
Sbjct: 315 ASNLFEKIQDKNVVSWNVMIGGYTHMSCYKEALGLFRRMMQSNIDPNDVTFLSILPACAN 374

Query: 179 AGEVEEGYCLFRRMPR-----KNVVS-WTAMIGGFAWNGFHKESLLLFIEMKGICDNGNN 232
            G ++ G  +   + +     KN V+ WT++I  +A  G            K I D  N 
Sbjct: 375 LGALDLGKWVHAYVDKNMKSMKNTVALWTSLIDMYAKCGD-------LAVAKRIFDCMNT 427

Query: 233 CNVQSCNSMINGYIRFGRLEEAQNLFDTVP----VRDEISWTSMIDGYLSVGQVSNAYYL 288
            ++ + N+MI+G+   G  + A  LF  +     V D+I++  ++      G +S     
Sbjct: 428 KSLATWNAMISGFAMHGHTDTALGLFSRMTSEGFVPDDITFVGVLTACKHAGLLSLGRRY 487

Query: 289 FHNMPDRDAVA-----WTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAG 343
           F +M     V+     +  MI    +  LF EA  L   M    + P  A +  L GA  
Sbjct: 488 FSSMIQDYKVSPKLPHYGCMIDLFGRAGLFDEAETLVKNME---MKPDGAIWCSLLGACR 544

Query: 344 ATANIDLGRQI--HCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDL--- 398
               I+L   +  H   ++ E+ S  +L   L ++YA  G  ++   I + +    +   
Sbjct: 545 IHRRIELAESVAKHLFELEPENPSAYVL---LSNIYAGAGRWEDVAKIRTRLNDNRMKKV 601

Query: 399 -----VSWNSMV----MGFSHHGLANETLKVFES----MLESGTHPNSVTFLGILSACSH 445
                +  +S+V    +G   H  +NE  K+ +     + ++G  P++   L  +     
Sbjct: 602 PGCSSIEVDSVVHEFLVGDKVHPQSNEIYKMLDEIDMRLEKAGFVPDTSEVLYDMDEEWK 661

Query: 446 AGLVSRGWELFNAMFDVYKIQPG 468
            G++S   E     F +   +PG
Sbjct: 662 EGVLSHHSEKLAIAFGLISTKPG 684


>gi|147856413|emb|CAN82500.1| hypothetical protein VITISV_004914 [Vitis vinifera]
          Length = 1408

 Score =  295 bits (755), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 192/612 (31%), Positives = 318/612 (51%), Gaps = 38/612 (6%)

Query: 9    SLVVHLTSSITKYSKRGF-IDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEE 67
             L V+L  ++  +  R + +++A  +F  MP    + +N  +   LQ+ +L +   LF +
Sbjct: 706  DLDVYLRCALMNFYGRCWGLEKANQVFHEMPNPEALLWNEAIILNLQSEKLQKGVELFRK 765

Query: 68   MPERNVVSWTAMICGLADA----GRVCEARKL----FEEMPERNVVSWNSMVVGLIRNGE 119
            M    + + TA I  +  A    G +  A+++    F    + +V   N ++    +NG+
Sbjct: 766  MQFSFLKAETATIVRVLQACGKMGALNAAKQIHGYVFRFGLDSDVSLCNPLISMYSKNGK 825

Query: 120  LNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEME----ERNVVTWTSMISG 175
            L  AR+VF+SM  +N  SWN+MI+ Y     + +A  LF E+E    + ++VTW  ++SG
Sbjct: 826  LELARRVFDSMENRNTSSWNSMISSYAALGFLNDAWSLFYELESSDMKPDIVTWNCLLSG 885

Query: 176  YCRAGEVEEGYCLFRRMP----RKNVVSWTAMIGGFAWNGFHKESLLLFIEMKG-ICDNG 230
            +   G  EE   + +RM     + N  S T+++   +  GF    L +  E  G +  NG
Sbjct: 886  HFLHGYKEEVLNILQRMQGEGFKPNSSSMTSVLQAISELGF----LNMGKETHGYVLRNG 941

Query: 231  NNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFH 290
             +C+V    S+I+ Y++   L  AQ +FD +  R+  +W S++ GY   G   +A  L +
Sbjct: 942  FDCDVYVGTSLIDMYVKNHSLXSAQAVFDNMKNRNIFAWNSLVSGYSFKGMFEDALRLLN 1001

Query: 291  NMPDR----DAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATA 346
             M       D V W  MISG     ++  A   FM        P +A+ + L  A  + +
Sbjct: 1002 QMEKEGIKPDLVTWNGMISGYA---MWGCARKAFM--------PNSASITCLLRACASLS 1050

Query: 347  NIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVM 406
             +  G++IHC+ ++     D+ +   LI MY+K   + NA+ +F  + ++ L SWN M+M
Sbjct: 1051 LLQKGKEIHCLSIRNGFIEDVFVATALIDMYSKSSSLKNAHKVFRRIQNKTLASWNCMIM 1110

Query: 407  GFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQ 466
            GF+  GL  E + VF  M + G  P+++TF  +LSAC ++GL+  GW+ F++M   Y+I 
Sbjct: 1111 GFAIFGLGKEAISVFNEMQKVGVGPDAITFTALLSACKNSGLIGEGWKYFDSMITDYRIV 1170

Query: 467  PGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAK 526
            P  EHY  M++LLGRAG + EA + +  +P +PD  IWGALLG+C     N   AE AAK
Sbjct: 1171 PRLEHYCCMVDLLGRAGYLDEAWDLIHTMPLKPDATIWGALLGSCRI-HKNLXFAETAAK 1229

Query: 527  RLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFL 586
             L +L+P N+  ++++ N+Y+   R  +   LR  MG  GVR     SW+  N  + +F 
Sbjct: 1230 NLFKLEPNNSANYILMMNLYSIFNRWEDMDHLRELMGAAGVRNRQVWSWIQINQRVHVFS 1289

Query: 587  SGDKIPAQVAEI 598
            S +K      +I
Sbjct: 1290 SDEKPHPDAGKI 1301



 Score = 56.2 bits (134), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 40/191 (20%), Positives = 83/191 (43%), Gaps = 1/191 (0%)

Query: 271 SMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATY-LFMEMRAHGVP 329
           ++I  YL  G   +A  +F+    R+ + W + +     +   +     +F E+   GV 
Sbjct: 612 NLISSYLGFGDFWSAAMVFYVGLPRNYLKWNSFVEEFKSSAGSLHIVLEVFKELHGKGVV 671

Query: 330 PLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNI 389
             +  +SV         +I LG +IH  L+K   + D+ L   L++ Y +C  ++ A  +
Sbjct: 672 FDSEVYSVALKTCTRVMDIWLGMEIHGCLIKRGFDLDVYLRCALMNFYGRCWGLEKANQV 731

Query: 390 FSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLV 449
           F  M + + + WN  ++         + +++F  M  S     + T + +L AC   G +
Sbjct: 732 FHEMPNPEALLWNEAIILNLQSEKLQKGVELFRKMQFSFLKAETATIVRVLQACGKMGAL 791

Query: 450 SRGWELFNAMF 460
           +   ++   +F
Sbjct: 792 NAAKQIHGYVF 802


>gi|356503704|ref|XP_003520645.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53360,
           mitochondrial-like [Glycine max]
          Length = 855

 Score =  295 bits (755), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 192/640 (30%), Positives = 317/640 (49%), Gaps = 75/640 (11%)

Query: 21  YSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPER----NVVSW 76
           Y K G + +A+  F  M  RNVVS+  M+SG+ QNG+ ++A  ++ +M +     + +++
Sbjct: 202 YGKCGSLKDARKAFDTMQLRNVVSWTIMISGYSQNGQENDAIIMYIQMLQSGYFPDPLTF 261

Query: 77  TAMICGLADAGRVCEARKL----FEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPI 132
            ++I     AG +   R+L     +   + ++++ N+++    R G++  A  VF  +  
Sbjct: 262 GSIIKACCIAGDIDLGRQLHGHVIKSGYDHHLIAQNALISMYTRFGQIVHASDVFTMIST 321

Query: 133 KNVISWNAMIAGYVECCMMGEAIVLFEEMEE----------------------------- 163
           K++ISW +MI G+ +     EA+ LF +M                               
Sbjct: 322 KDLISWASMITGFTQLGYEIEALYLFRDMFRQGFYQPNEFIFGSVFSACRSLLEPEFGRQ 381

Query: 164 -----------RNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGF 212
                      RNV    S+   Y + G +      F ++   ++VSW A+I  F+ +G 
Sbjct: 382 IHGMCAKFGLGRNVFAGCSLCDMYAKFGFLPSAIRAFYQIESPDLVSWNAIIAAFSDSGD 441

Query: 213 HKESLLLFIEM-------KGI------CDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFD 259
             E++  F +M        GI      C  G+   +     + +  I+ G  +EA     
Sbjct: 442 VNEAIYFFCQMMHTGLMPDGITFLSLLCACGSPVTINQGTQIHSYIIKIGLDKEAA---- 497

Query: 260 TVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDR-DAVAWTAMISGLVQNELFVEATY 318
                      S++  Y     + +A+ +F ++ +  + V+W A++S  +Q++   E   
Sbjct: 498 --------VCNSLLTMYTKCSNLHDAFNVFKDVSENANLVSWNAILSACLQHKQAGEVFR 549

Query: 319 LFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYA 378
           LF  M      P N T + + G     A++++G Q+HC  +K+    D+ + N LI MYA
Sbjct: 550 LFKLMLFSENKPDNITITTILGTCAELASLEVGNQVHCFSVKSGLVVDVSVSNRLIDMYA 609

Query: 379 KCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLG 438
           KCG + +A ++F +  + D+VSW+S+++G++  GL +E L +F  M   G  PN VT+LG
Sbjct: 610 KCGSLKHARDVFGSTQNPDIVSWSSLIVGYAQFGLGHEALNLFRMMKNLGVQPNEVTYLG 669

Query: 439 ILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFE 498
           +LSACSH GLV  GW  +N M     I P  EH   M++LL RAG + EAE F+ ++ F 
Sbjct: 670 VLSACSHIGLVEEGWHFYNTMEIELGIPPTREHVSCMVDLLARAGCLYEAENFIKKMGFN 729

Query: 499 PDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKL 558
           PD  +W  LL +C    GN +IAE AA+ +L+LDP N+ A V+L NI+A+ G   E  +L
Sbjct: 730 PDITMWKTLLASCK-THGNVDIAERAAENILKLDPSNSAALVLLSNIHASVGNWKEVARL 788

Query: 559 RMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
           R  M   GV+KVPG SW+     I +F S D    Q  +I
Sbjct: 789 RNLMKQMGVQKVPGQSWIAVKDQIHVFFSEDNSHQQRGDI 828



 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 127/487 (26%), Positives = 227/487 (46%), Gaps = 56/487 (11%)

Query: 39  QRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEE 98
           Q ++V  N +L+ + + G L +AR+ F+ M  RNVVSWT MI G +  G+  +A  ++ +
Sbjct: 189 QPDLVLQNHILNMYGKCGSLKDARKAFDTMQLRNVVSWTIMISGYSQNGQENDAIIMYIQ 248

Query: 99  MPER----NVVSWNSMVVGLIRNGELNEARK----VFNSMPIKNVISWNAMIAGYVECCM 150
           M +     + +++ S++      G+++  R+    V  S    ++I+ NA+I+ Y     
Sbjct: 249 MLQSGYFPDPLTFGSIIKACCIAGDIDLGRQLHGHVIKSGYDHHLIAQNALISMYTRFGQ 308

Query: 151 MGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWN 210
           +  A  +F  +  +++++W SMI+G+ + G   E   LFR M R+        I G  ++
Sbjct: 309 IVHASDVFTMISTKDLISWASMITGFTQLGYEIEALYLFRDMFRQGFYQPNEFIFGSVFS 368

Query: 211 GFHKESLL---LFIEMKGICDN-GNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDE 266
                SLL      ++ G+C   G   NV +  S+ + Y +FG L  A   F  +   D 
Sbjct: 369 AC--RSLLEPEFGRQIHGMCAKFGLGRNVFAGCSLCDMYAKFGFLPSAIRAFYQIESPDL 426

Query: 267 ISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAH 326
           +SW ++I  +   G V+                               EA Y F +M   
Sbjct: 427 VSWNAIIAAFSDSGDVN-------------------------------EAIYFFCQMMHT 455

Query: 327 GVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNA 386
           G+ P   TF  L  A G+   I+ G QIH  ++K   + +  + N L++MY KC  + +A
Sbjct: 456 GLMPDGITFLSLLCACGSPVTINQGTQIHSYIIKIGLDKEAAVCNSLLTMYTKCSNLHDA 515

Query: 387 YNIFSNMVSR-DLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSH 445
           +N+F ++    +LVSWN+++     H  A E  ++F+ ML S   P+++T   IL  C+ 
Sbjct: 516 FNVFKDVSENANLVSWNAILSACLQHKQAGEVFRLFKLMLFSENKPDNITITTILGTCAE 575

Query: 446 AGLVSRGWELFNAMFDVYKIQPGPEHYVS----MINLLGRAGKIKEAEEFVLRLPFEPDH 501
              +  G ++       + ++ G    VS    +I++  + G +K A + V      PD 
Sbjct: 576 LASLEVGNQVH-----CFSVKSGLVVDVSVSNRLIDMYAKCGSLKHARD-VFGSTQNPDI 629

Query: 502 RIWGALL 508
             W +L+
Sbjct: 630 VSWSSLI 636



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 108/450 (24%), Positives = 192/450 (42%), Gaps = 76/450 (16%)

Query: 105 VSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAG-YVECCMMGEAIVLFEEMEE 163
           +S NS +  + +     EA   FN  P  + I   +   G  +  C    ++   +++ +
Sbjct: 122 LSTNSYINLMCKQRHYREALDTFNFHPKNSSIQLESSTYGNLILACTSIRSLKYGKKIHD 181

Query: 164 R--------NVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKE 215
                    ++V    +++ Y + G +++    F  M  +NVVSWT MI G++ NG   +
Sbjct: 182 HILKSNCQPDLVLQNHILNMYGKCGSLKDARKAFDTMQLRNVVSWTIMISGYSQNGQEND 241

Query: 216 SLLLFIEM----------------KGIC----------------DNGNNCNVQSCNSMIN 243
           +++++I+M                K  C                 +G + ++ + N++I+
Sbjct: 242 AIIMYIQMLQSGYFPDPLTFGSIIKACCIAGDIDLGRQLHGHVIKSGYDHHLIAQNALIS 301

Query: 244 GYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAM 303
            Y RFG++  A ++F  +  +D ISW SMI G+  +G    A YLF +M           
Sbjct: 302 MYTRFGQIVHASDVFTMISTKDLISWASMITGFTQLGYEIEALYLFRDM----------F 351

Query: 304 ISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTES 363
             G  Q   F+                    F  +F A  +    + GRQIH +  K   
Sbjct: 352 RQGFYQPNEFI--------------------FGSVFSACRSLLEPEFGRQIHGMCAKFGL 391

Query: 364 ESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFES 423
             ++     L  MYAK G + +A   F  + S DLVSWN+++  FS  G  NE +  F  
Sbjct: 392 GRNVFAGCSLCDMYAKFGFLPSAIRAFYQIESPDLVSWNAIIAAFSDSGDVNEAIYFFCQ 451

Query: 424 MLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYV--SMINLLGR 481
           M+ +G  P+ +TFL +L AC     +++G ++ +    + KI    E  V  S++ +  +
Sbjct: 452 MMHTGLMPDGITFLSLLCACGSPVTINQGTQIHSY---IIKIGLDKEAAVCNSLLTMYTK 508

Query: 482 AGKIKEAEEFVLRLPFEPDHRIWGALLGAC 511
              + +A      +    +   W A+L AC
Sbjct: 509 CSNLHDAFNVFKDVSENANLVSWNAILSAC 538



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 69/255 (27%), Positives = 127/255 (49%), Gaps = 23/255 (9%)

Query: 332 NATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFS 391
           ++T+  L  A  +  ++  G++IH  ++K+  + DL+L+N +++MY KCG + +A   F 
Sbjct: 157 SSTYGNLILACTSIRSLKYGKKIHDHILKSNCQPDLVLQNHILNMYGKCGSLKDARKAFD 216

Query: 392 NMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSR 451
            M  R++VSW  M+ G+S +G  N+ + ++  ML+SG  P+ +TF  I+ AC  AG +  
Sbjct: 217 TMQLRNVVSWTIMISGYSQNGQENDAIIMYIQMLQSGYFPDPLTFGSIIKACCIAGDIDL 276

Query: 452 GWELFNAMFDVYKIQPGPEHYV----SMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGAL 507
           G +L       + I+ G +H++    ++I++  R G+I  A + V  +    D   W ++
Sbjct: 277 GRQLHG-----HVIKSGYDHHLIAQNALISMYTRFGQIVHASD-VFTMISTKDLISWASM 330

Query: 508 LGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAAS--------GRHVEEHKLR 559
           +   GF +   EI      R +       P   +  ++++A         GR +  H + 
Sbjct: 331 I--TGFTQLGYEIEALYLFRDMFRQGFYQPNEFIFGSVFSACRSLLEPEFGRQI--HGMC 386

Query: 560 MDMGLKGVRKVPGCS 574
              GL G     GCS
Sbjct: 387 AKFGL-GRNVFAGCS 400


>gi|222617261|gb|EEE53393.1| hypothetical protein OsJ_36441 [Oryza sativa Japonica Group]
          Length = 1151

 Score =  295 bits (755), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 188/630 (29%), Positives = 309/630 (49%), Gaps = 51/630 (8%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMP----ERNV 73
           IT Y + G    A+ +F  MP R+ V++N ++SG  Q G    A  +FEEM       + 
Sbjct: 185 ITLYLRCGSFRLAERVFCDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLSPDC 244

Query: 74  VSWTAMICGLADAGRVCEARKL----FEEMPERNVVSWNSMVVGLIRNGELNEARKVFNS 129
           V+ ++++   A  G + +  +L    F+     + +   S++   ++ G++  A  +FNS
Sbjct: 245 VTISSLLAACASLGDLQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVIFNS 304

Query: 130 MPIKNVISWNAMIAGYVECCMMGEAIVLFEEME--------------------------- 162
               NV+ WN M+  + +   + ++  LF +M+                           
Sbjct: 305 SDRTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREIDLG 364

Query: 163 ------------ERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWN 210
                       E ++     +I  Y + G +E+   +   +  K+VVSWT+MI G+  +
Sbjct: 365 EQIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGYVQH 424

Query: 211 GFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGY--IRFGRLEEAQNLFDTVPVRDEIS 268
              K++L  F EM+      +N  + S  S   G   +R G L+    ++ +    D   
Sbjct: 425 ECCKDALAAFKEMQKCGIWPDNIGLASAISGCAGINAMRQG-LQIHARIYVSGYSGDVSI 483

Query: 269 WTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGV 328
           W ++++ Y   G++  A+  F  M  +D +    ++SG  Q+ L  EA  +FM M   GV
Sbjct: 484 WNALVNLYARCGRIREAFSSFEEMELKDGITGNGLVSGFAQSGLHEEALKVFMRMDQSGV 543

Query: 329 PPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYN 388
                TF     A+   A I  G+QIH  ++KT    +  + N LIS+Y KCG  ++A  
Sbjct: 544 KHNVFTFVSALSASANLAEIKQGKQIHARVIKTGHSFETEVGNALISLYGKCGSFEDAKM 603

Query: 389 IFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGL 448
            FS M  R+ VSWN+++   S HG   E L +F+ M + G  PN VTF+G+L+ACSH GL
Sbjct: 604 EFSEMSERNEVSWNTIITSCSQHGRGLEALDLFDQMKKEGIKPNDVTFIGVLAACSHVGL 663

Query: 449 VSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALL 508
           V  G   F +M D Y I+P P+HY  +I++ GRAG++  A++F+  +P   D  +W  LL
Sbjct: 664 VEEGLSYFKSMSDEYGIRPRPDHYACVIDIFGRAGQLDRAKKFIEEMPIAADAMVWRTLL 723

Query: 509 GACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVR 568
            AC     N E+ E AAK LLEL+P ++ ++V+L N YA + +     ++R  M  +GVR
Sbjct: 724 SACKV-HKNIEVGEFAAKHLLELEPHDSASYVLLSNAYAVTEKWANRDQVRKMMRDRGVR 782

Query: 569 KVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
           K PG SW+     +  F  GD++     +I
Sbjct: 783 KEPGRSWIEVKNVVHAFFVGDRLHPLAEQI 812



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 145/578 (25%), Positives = 250/578 (43%), Gaps = 122/578 (21%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEM------PER 71
           I  YSK G +  A+ +F+ +  R+ VS+ AMLSG+ QNG   EA  L+ +M      P  
Sbjct: 84  IDLYSKNGLVLPARRVFEELSARDNVSWVAMLSGYAQNGLGEEALGLYRQMHRAGVVPTP 143

Query: 72  NVVSWTAMICGLAD---AGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFN 128
            V+S     C  A+    GR+  A+  ++      +   N+++   +R G    A +VF 
Sbjct: 144 YVLSSVLSSCTKAELFAQGRLIHAQG-YKHGFCSEIFVGNAVITLYLRCGSFRLAERVFC 202

Query: 129 SMPIKNVISWNAMIAGYVECCMMGEAIVLFEEME----ERNVVTWTSMISG--------- 175
            MP ++ +++N +I+G+ +C     A+ +FEEM+      + VT +S+++          
Sbjct: 203 DMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLSPDCVTISSLLAACASLGDLQK 262

Query: 176 --------------------------YCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAW 209
                                     Y + G+VE    +F    R NVV W  M+  F  
Sbjct: 263 GTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVIFNSSDRTNVVLWNLMLVAFGQ 322

Query: 210 NGFHKESLLLFIEMKGICDNGNN----CNVQSCNS------------------------- 240
                +S  LF +M+      N     C +++C                           
Sbjct: 323 INDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREIDLGEQIHSLSVKTGFESDMYV 382

Query: 241 ---MINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDA 297
              +I+ Y ++G LE+A+ + + +  +D +SWTSMI GY                     
Sbjct: 383 SGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGY--------------------- 421

Query: 298 VAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATF-SVLFGAAGATANIDLGRQIHC 356
                     VQ+E   +A   F EM+  G+ P N    S + G AG  A +  G QIH 
Sbjct: 422 ----------VQHECCKDALAAFKEMQKCGIWPDNIGLASAISGCAGINA-MRQGLQIHA 470

Query: 357 VLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANE 416
            +  +    D+ + N L+++YA+CG I  A++ F  M  +D ++ N +V GF+  GL  E
Sbjct: 471 RIYVSGYSGDVSIWNALVNLYARCGRIREAFSSFEEMELKDGITGNGLVSGFAQSGLHEE 530

Query: 417 TLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDV---YKIQPGPEHYV 473
            LKVF  M +SG   N  TF+  LSA ++   + +G ++   +      ++ + G     
Sbjct: 531 ALKVFMRMDQSGVKHNVFTFVSALSASANLAEIKQGKQIHARVIKTGHSFETEVGN---- 586

Query: 474 SMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGAC 511
           ++I+L G+ G  ++A+     +  E +   W  ++ +C
Sbjct: 587 ALISLYGKCGSFEDAKMEFSEMS-ERNEVSWNTIITSC 623



 Score =  119 bits (298), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 94/345 (27%), Positives = 159/345 (46%), Gaps = 13/345 (3%)

Query: 172 MISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMK--GICDN 229
           +I  Y + G V     +F  +  ++ VSW AM+ G+A NG  +E+L L+ +M   G+   
Sbjct: 83  LIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSGYAQNGLGEEALGLYRQMHRAGVVPT 142

Query: 230 GNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLF 289
               +    +         GRL  AQ  +      +     ++I  YL  G    A  +F
Sbjct: 143 PYVLSSVLSSCTKAELFAQGRLIHAQG-YKHGFCSEIFVGNAVITLYLRCGSFRLAERVF 201

Query: 290 HNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANID 349
            +MP RD V +  +ISG  Q      A  +F EM+  G+ P   T S L  A  +  ++ 
Sbjct: 202 CDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLSPDCVTISSLLAACASLGDLQ 261

Query: 350 LGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFS 409
            G Q+H  L K    SD I+E  L+ +Y KCG ++ A  IF++    ++V WN M++ F 
Sbjct: 262 KGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVIFNSSDRTNVVLWNLMLVAFG 321

Query: 410 HHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGP 469
                 ++ ++F  M  +G  PN  T+  IL  C+    +  G ++ +       ++ G 
Sbjct: 322 QINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREIDLGEQIHS-----LSVKTGF 376

Query: 470 EH--YVS--MINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGA 510
           E   YVS  +I++  + G +++A   VL +  E D   W +++  
Sbjct: 377 ESDMYVSGVLIDMYSKYGWLEKARR-VLEMLKEKDVVSWTSMIAG 420



 Score = 68.9 bits (167), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 66/238 (27%), Positives = 107/238 (44%), Gaps = 12/238 (5%)

Query: 292 MPDRDAVAWTAMISGLVQNELFVEATYLFME-MRAHG-VPPLNATFSVLFGAAGATANID 349
           M  R A +    ++G + +E   +   LF +  R HG + PL+     L    G      
Sbjct: 1   MTRRGAASLGRTLAGFLAHEDPAKVLSLFADKARQHGGLGPLDFA-CALRACRGNGRRWQ 59

Query: 350 LGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFS 409
           +  +IH   +        I+ N LI +Y+K G++  A  +F  + +RD VSW +M+ G++
Sbjct: 60  VVPEIHAKAVTRGLGKYRIVGNLLIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSGYA 119

Query: 410 HHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGP 469
            +GL  E L ++  M  +G  P       +LS+C+ A L ++G  L +A    YK     
Sbjct: 120 QNGLGEEALGLYRQMHRAGVVPTPYVLSSVLSSCTKAELFAQG-RLIHA--QGYKHGFCS 176

Query: 470 EHYV--SMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGA---CGFCEGNAEIAE 522
           E +V  ++I L  R G  + AE     +P   D   +  L+     CG  E   EI E
Sbjct: 177 EIFVGNAVITLYLRCGSFRLAERVFCDMPHR-DTVTFNTLISGHAQCGHGEHALEIFE 233


>gi|15226463|ref|NP_179705.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206523|sp|Q9SKQ4.1|PP167_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g21090
 gi|4803934|gb|AAD29807.1| unknown protein [Arabidopsis thaliana]
 gi|330252028|gb|AEC07122.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 597

 Score =  295 bits (755), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 166/489 (33%), Positives = 267/489 (54%), Gaps = 3/489 (0%)

Query: 103 NVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEME 162
           N +  N ++   ++ G+  +A KVF+ M ++N+ SWN M++GYV+  M+  A V+F+ M 
Sbjct: 81  NTLLSNHLIGMYMKCGKPIDACKVFDQMHLRNLYSWNNMVSGYVKSGMLVRARVVFDSMP 140

Query: 163 ERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIE 222
           ER+VV+W +M+ GY + G + E    ++   R  +        G          L L  +
Sbjct: 141 ERDVVSWNTMVIGYAQDGNLHEALWFYKEFRRSGIKFNEFSFAGLLTACVKSRQLQLNRQ 200

Query: 223 MKG-ICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQ 281
             G +   G   NV    S+I+ Y + G++E A+  FD + V+D   WT++I GY  +G 
Sbjct: 201 AHGQVLVAGFLSNVVLSCSIIDAYAKCGQMESAKRCFDEMTVKDIHIWTTLISGYAKLGD 260

Query: 282 VSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGA 341
           +  A  LF  MP+++ V+WTA+I+G V+      A  LF +M A GV P   TFS    A
Sbjct: 261 MEAAEKLFCEMPEKNPVSWTALIAGYVRQGSGNRALDLFRKMIALGVKPEQFTFSSCLCA 320

Query: 342 AGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSR-DLVS 400
           + + A++  G++IH  +++T    + I+ + LI MY+K G ++ +  +F     + D V 
Sbjct: 321 SASIASLRHGKEIHGYMIRTNVRPNAIVISSLIDMYSKSGSLEASERVFRICDDKHDCVF 380

Query: 401 WNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMF 460
           WN+M+   + HGL ++ L++ + M++    PN  T + IL+ACSH+GLV  G   F +M 
Sbjct: 381 WNTMISALAQHGLGHKALRMLDDMIKFRVQPNRTTLVVILNACSHSGLVEEGLRWFESMT 440

Query: 461 DVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEI 520
             + I P  EHY  +I+LLGRAG  KE    +  +PFEPD  IW A+LG C    GN E+
Sbjct: 441 VQHGIVPDQEHYACLIDLLGRAGCFKELMRKIEEMPFEPDKHIWNAILGVCRI-HGNEEL 499

Query: 521 AEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNG 580
            + AA  L++LDP ++  +++L +IYA  G+     KLR  M  + V K    SW+    
Sbjct: 500 GKKAADELIKLDPESSAPYILLSSIYADHGKWELVEKLRGVMKKRRVNKEKAVSWIEIEK 559

Query: 581 GIQMFLSGD 589
            ++ F   D
Sbjct: 560 KVEAFTVSD 568



 Score =  152 bits (385), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 122/415 (29%), Positives = 191/415 (46%), Gaps = 18/415 (4%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWT 77
           I  Y K G   +A  +F  M  RN+ S+N M+SG++++G L  AR +F+ MPER+VVSW 
Sbjct: 89  IGMYMKCGKPIDACKVFDQMHLRNLYSWNNMVSGYVKSGMLVRARVVFDSMPERDVVSWN 148

Query: 78  AMICGLADAGRVCEARKLFEEMPER----NVVSWNSMVVGLIRNGELNEARKVFNSMPI- 132
            M+ G A  G + EA   ++E        N  S+  ++   +++ +L   R+    + + 
Sbjct: 149 TMVIGYAQDGNLHEALWFYKEFRRSGIKFNEFSFAGLLTACVKSRQLQLNRQAHGQVLVA 208

Query: 133 ---KNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLF 189
               NV+   ++I  Y +C  M  A   F+EM  +++  WT++ISGY + G++E    LF
Sbjct: 209 GFLSNVVLSCSIIDAYAKCGQMESAKRCFDEMTVKDIHIWTTLISGYAKLGDMEAAEKLF 268

Query: 190 RRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQS--CNSMINGYIR 247
             MP KN VSWTA+I G+   G    +L LF +M  +          S  C S     +R
Sbjct: 269 CEMPEKNPVSWTALIAGYVRQGSGNRALDLFRKMIALGVKPEQFTFSSCLCASASIASLR 328

Query: 248 FGRLEEAQNLFDTVPVR-DEISWTSMIDGYLSVGQVSNAYYLFHNMPDR-DAVAWTAMIS 305
            G+  E         VR + I  +S+ID Y   G +  +  +F    D+ D V W  MIS
Sbjct: 329 HGK--EIHGYMIRTNVRPNAIVISSLIDMYSKSGSLEASERVFRICDDKHDCVFWNTMIS 386

Query: 306 GLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLG-RQIHCVLMKTESE 364
            L Q+ L  +A  +  +M    V P   T  V+  A   +  ++ G R    + ++    
Sbjct: 387 ALAQHGLGHKALRMLDDMIKFRVQPNRTTLVVILNACSHSGLVEEGLRWFESMTVQHGIV 446

Query: 365 SDLILENCLISMYAKCGVIDNAYNIFSNM-VSRDLVSWNSMVMGFSHHGLANETL 418
            D     CLI +  + G           M    D   WN+++     HG  NE L
Sbjct: 447 PDQEHYACLIDLLGRAGCFKELMRKIEEMPFEPDKHIWNAILGVCRIHG--NEEL 499



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 75/309 (24%), Positives = 126/309 (40%), Gaps = 45/309 (14%)

Query: 9   SLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEM 68
           S VV   S I  Y+K G ++ AK  F  M  +++  +  ++SG+ + G +  A +LF EM
Sbjct: 212 SNVVLSCSIIDAYAKCGQMESAKRCFDEMTVKDIHIWTTLISGYAKLGDMEAAEKLFCEM 271

Query: 69  PERNVVSWTAMICGLADAGRVCEARKLFEEM------PERNVVSWNSMVVGLIRNGELNE 122
           PE+N VSWTA+I G    G    A  LF +M      PE+   +++S +        L  
Sbjct: 272 PEKNPVSWTALIAGYVRQGSGNRALDLFRKMIALGVKPEQ--FTFSSCLCASASIASLRH 329

Query: 123 ARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEV 182
            +++   M   NV                             N +  +S+I  Y ++G +
Sbjct: 330 GKEIHGYMIRTNV---------------------------RPNAIVISSLIDMYSKSGSL 362

Query: 183 EEGYCLFRRMPRK-NVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSM 241
           E    +FR    K + V W  MI   A +G   ++L +  +M       N   +     +
Sbjct: 363 EASERVFRICDDKHDCVFWNTMISALAQHGLGHKALRMLDDMIKFRVQPNRTTLV---VI 419

Query: 242 INGYIRFGRLEEAQNLFDTVPVR-----DEISWTSMIDGYLSVGQVSNAYYLFHNMP-DR 295
           +N     G +EE    F+++ V+     D+  +  +ID     G           MP + 
Sbjct: 420 LNACSHSGLVEEGLRWFESMTVQHGIVPDQEHYACLIDLLGRAGCFKELMRKIEEMPFEP 479

Query: 296 DAVAWTAMI 304
           D   W A++
Sbjct: 480 DKHIWNAIL 488


>gi|125582503|gb|EAZ23434.1| hypothetical protein OsJ_07125 [Oryza sativa Japonica Group]
          Length = 596

 Score =  295 bits (755), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 179/519 (34%), Positives = 271/519 (52%), Gaps = 49/519 (9%)

Query: 96  FEEMPERNVVSWNSMVVGLIR-NGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEA 154
           F+++P +N  S+NS++  L R  G L +A ++ + MP  +                    
Sbjct: 87  FDDLPHKNAHSYNSLLAALARGRGTLPDALRLLDGMPPAS-------------------- 126

Query: 155 IVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKN--------VVSWTAMIGG 206
                    RNVV++ ++IS   R G   E   +F ++ R          +  +T +   
Sbjct: 127 ---------RNVVSYNTVISSLARHGRESEALRVFAQLARDRGLGQQQVAIDRFTVVSAA 177

Query: 207 FAWNGFHKESLLLFIEMKG-ICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRD 265
            A  G      L   E+ G +  +G    V   N+M++ Y + GR+E+A+ +FD + +RD
Sbjct: 178 SACAGLRDARHLR--ELHGAVVVSGMEVTVIMANAMVDAYSKAGRVEDARGVFDQMTIRD 235

Query: 266 EISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRA 325
            +SWTSMI GY     + +A  +F  MP +DA+AWTA+ISG  QN     A  LF  M  
Sbjct: 236 SVSWTSMIAGYCRASMLDDAVQVFDMMPAQDAIAWTALISGHEQNGEEEIALELFERMTG 295

Query: 326 HGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESD---LILENCLISMYAKCGV 382
            GV P         GA      +  G+++H  +++    SD   + + N LI MY+KCG 
Sbjct: 296 EGVVPTPFALVSCLGACAKVGLVARGKEVHGFILRRSIGSDPFNVFIHNALIDMYSKCGD 355

Query: 383 IDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSA 442
           +  A  +F  M+ RD++SWNSMV GFSH+G   ++L VFE ML+    P  VTFL +L+A
Sbjct: 356 MVAAMAVFDRMLERDIISWNSMVTGFSHNGQGKQSLAVFERMLKDEVQPTYVTFLAVLTA 415

Query: 443 CSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFE---P 499
           CSHAGLVS G  +  +M D + ++P  EHY + I+ LGR  +++EA EF+  L  +    
Sbjct: 416 CSHAGLVSDGRRILESMQD-HGVEPRAEHYAAFIDALGRNRQLEEASEFIKGLSSKIGLG 474

Query: 500 DHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLR 559
               WGALLGAC    GN EIAE  A+ L +L+P N+  +V+L NIY+A+G+  +  ++R
Sbjct: 475 TTGSWGALLGAC-HVHGNIEIAEEVAEALFQLEPENSGRYVMLSNIYSAAGQWDDARQVR 533

Query: 560 MDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
             M  KG+RK    SW+       MF++ D    +  EI
Sbjct: 534 ALMKGKGLRKDQAYSWIEVQRAKHMFVADDTSHHEANEI 572



 Score =  139 bits (350), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 102/346 (29%), Positives = 166/346 (47%), Gaps = 28/346 (8%)

Query: 24  RGFIDEAKALFQLMP--QRNVVSYNAMLSGFLQNGRLSEARRLFEEMPER---------- 71
           RG + +A  L   MP   RNVVSYN ++S   ++GR SEA R+F ++             
Sbjct: 109 RGTLPDALRLLDGMPPASRNVVSYNTVISSLARHGRESEALRVFAQLARDRGLGQQQVAI 168

Query: 72  ---NVVSWTAMICGLADAGRVCEAR-KLFEEMPERNVVSWNSMVVGLIRNGELNEARKVF 127
               VVS  +   GL DA  + E    +     E  V+  N+MV    + G + +AR VF
Sbjct: 169 DRFTVVSAASACAGLRDARHLRELHGAVVVSGMEVTVIMANAMVDAYSKAGRVEDARGVF 228

Query: 128 NSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYC 187
           + M I++ +SW +MIAGY    M+ +A+ +F+ M  ++ + WT++ISG+ + GE E    
Sbjct: 229 DQMTIRDSVSWTSMIAGYCRASMLDDAVQVFDMMPAQDAIAWTALISGHEQNGEEEIALE 288

Query: 188 LFRRMPRKNVV----SWTAMIGGFAWNGF--HKESLLLFIEMKGICDNGNNCNVQSCNSM 241
           LF RM  + VV    +  + +G  A  G     + +  FI  + I  +  N  +   N++
Sbjct: 289 LFERMTGEGVVPTPFALVSCLGACAKVGLVARGKEVHGFILRRSIGSDPFNVFIH--NAL 346

Query: 242 INGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDA---- 297
           I+ Y + G +  A  +FD +  RD ISW SM+ G+   GQ   +  +F  M   +     
Sbjct: 347 IDMYSKCGDMVAAMAVFDRMLERDIISWNSMVTGFSHNGQGKQSLAVFERMLKDEVQPTY 406

Query: 298 VAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAG 343
           V + A+++      L  +   +   M+ HGV P    ++    A G
Sbjct: 407 VTFLAVLTACSHAGLVSDGRRILESMQDHGVEPRAEHYAAFIDALG 452



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 72/264 (27%), Positives = 131/264 (49%), Gaps = 20/264 (7%)

Query: 11  VVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPE 70
           V+   + +  YSK G +++A+ +F  M  R+ VS+ +M++G+ +   L +A ++F+ MP 
Sbjct: 205 VIMANAMVDAYSKAGRVEDARGVFDQMTIRDSVSWTSMIAGYCRASMLDDAVQVFDMMPA 264

Query: 71  RNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMV---------VGLIRNGELN 121
           ++ ++WTA+I G    G    A +LFE M    VV     +         VGL+  G+  
Sbjct: 265 QDAIAWTALISGHEQNGEEEIALELFERMTGEGVVPTPFALVSCLGACAKVGLVARGKEV 324

Query: 122 EA---RKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCR 178
                R+   S P  NV   NA+I  Y +C  M  A+ +F+ M ER++++W SM++G+  
Sbjct: 325 HGFILRRSIGSDPF-NVFIHNALIDMYSKCGDMVAAMAVFDRMLERDIISWNSMVTGFSH 383

Query: 179 AGEVEEGYCLFRRMPRKNV----VSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCN 234
            G+ ++   +F RM +  V    V++ A++   +  G   +   +   M+   D+G    
Sbjct: 384 NGQGKQSLAVFERMLKDEVQPTYVTFLAVLTACSHAGLVSDGRRILESMQ---DHGVEPR 440

Query: 235 VQSCNSMINGYIRFGRLEEAQNLF 258
            +   + I+   R  +LEEA    
Sbjct: 441 AEHYAAFIDALGRNRQLEEASEFI 464


>gi|449491114|ref|XP_004158804.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g15510, chloroplastic-like [Cucumis sativus]
          Length = 878

 Score =  295 bits (755), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 206/657 (31%), Positives = 315/657 (47%), Gaps = 92/657 (14%)

Query: 28  DEAKALFQLMPQRN----VVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGL 83
           DE   +++L+        V   NA+LS F++ G L +A  +F +M ER+V SW  ++ G 
Sbjct: 114 DEGSRVYELVSSSKSCLCVRLGNALLSMFVRFGNLLDAWYVFGKMSERDVFSWNVLVGGY 173

Query: 84  ADAGRVCEARKLFEEMP---------------------------------------ERNV 104
           A AG   EA  L+  M                                        E +V
Sbjct: 174 AKAGCFDEALNLYHRMLWAEIRPNVYTFPSVLKTCAGVSDIARGKEIHAHVIRFGFESDV 233

Query: 105 VSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEER 164
              N+++   ++ G+++ AR +F+ MP ++ ISWNAMI+GY E     E + LF  M E 
Sbjct: 234 DVGNALITMYVKCGDISNARMLFDKMPKRDRISWNAMISGYFENGGGLEGLELFSMMREL 293

Query: 165 NV----VTWT-----------------------------------SMISGYCRAGEVEEG 185
           +V    +T T                                   S+I  Y   G +EE 
Sbjct: 294 SVDPDLITMTTVASACELLDNERLGRGVHGYVVKSEFGGDISMNNSLIQMYSSLGRLEEA 353

Query: 186 YCLFRRMPRKNVVSWTAMIGGFAWNG--FHKESLLLFIEMKGIC-DNGNNCNVQSCNSMI 242
             +F RM  K+VVSWTAMI     +   F        +E++GI  D     +V S  + I
Sbjct: 354 ETVFSRMESKDVVSWTAMIASLVSHKLPFKAVETYKMMELEGILPDEITLVSVLSACACI 413

Query: 243 NGYIRFG-RLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWT 301
            G++  G RL E      T  V   I   S+ID Y     V NA  +F N+  ++ V+WT
Sbjct: 414 -GHLDLGIRLHEIA--IKTGLVSHVIVSNSLIDMYSKCKCVDNALEVFRNISGKNVVSWT 470

Query: 302 AMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKT 361
           ++I GL  N    EA   F +M+   + P + T   +  A      +  G++IH   ++T
Sbjct: 471 SLILGLRINNRSFEALLFFRQMK-ESMKPNSVTLISVLSACARIGALMRGKEIHAHALRT 529

Query: 362 ESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVF 421
               D  L N ++ MY +CG    A N F N   +D+ +WN ++ G++  G A   +++F
Sbjct: 530 GVGFDGFLPNAILDMYVRCGRKVPALNQF-NSQKKDVTAWNILLTGYAQQGQAKLAVELF 588

Query: 422 ESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGR 481
           + MLE   HP+ +TF+ +L ACS +G+V+ G E FN M + Y + P  +HY  ++++LGR
Sbjct: 589 DKMLELEIHPDEITFISLLCACSKSGMVTEGLEYFNIMKNKYNLTPNLKHYACVVDILGR 648

Query: 482 AGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVV 541
           AG++ +A +F+  +P  PD  IWGALL AC     N E+ E AAKR+ E D  +   +++
Sbjct: 649 AGQLDDAYDFIQDMPIRPDAAIWGALLNACRI-HRNVELGEIAAKRVFEKDNKSVGYYIL 707

Query: 542 LCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
           LCN+YA  G   +  K+R  M  +G+   PGCSW+   G +  FLSGD   +Q  EI
Sbjct: 708 LCNLYAGCGNWDKVSKVRSLMRERGLSADPGCSWVEIKGKVHAFLSGDNSHSQSKEI 764



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 115/441 (26%), Positives = 185/441 (41%), Gaps = 58/441 (13%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNV---- 73
           IT Y K G I  A+ LF  MP+R+ +S+NAM+SG+ +NG   E   LF  M E +V    
Sbjct: 240 ITMYVKCGDISNARMLFDKMPKRDRISWNAMISGYFENGGGLEGLELFSMMRELSVDPDL 299

Query: 74  --VSWTAMICGLADAGRVCEARKLFEEMPE--RNVVSWNSMVVGLIRNGELNEARKVFNS 129
             ++  A  C L D  R+      +    E   ++   NS++      G L EA  VF+ 
Sbjct: 300 ITMTTVASACELLDNERLGRGVHGYVVKSEFGGDISMNNSLIQMYSSLGRLEEAETVFSR 359

Query: 130 MPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEER------------------------- 164
           M  K+V+SW AMIA  V   +  +A+  ++ ME                           
Sbjct: 360 MESKDVVSWTAMIASLVSHKLPFKAVETYKMMELEGILPDEITLVSVLSACACIGHLDLG 419

Query: 165 --------------NVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWN 210
                         +V+   S+I  Y +   V+    +FR +  KNVVSWT++I G   N
Sbjct: 420 IRLHEIAIKTGLVSHVIVSNSLIDMYSKCKCVDNALEVFRNISGKNVVSWTSLILGLRIN 479

Query: 211 GFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNL----FDTVPVRDE 266
               E+LL F +MK         N  +  S+++   R G L   + +      T    D 
Sbjct: 480 NRSFEALLFFRQMK----ESMKPNSVTLISVLSACARIGALMRGKEIHAHALRTGVGFDG 535

Query: 267 ISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAH 326
               +++D Y+  G+   A   F N   +D  AW  +++G  Q      A  LF +M   
Sbjct: 536 FLPNAILDMYVRCGRKVPALNQF-NSQKKDVTAWNILLTGYAQQGQAKLAVELFDKMLEL 594

Query: 327 GVPPLNATFSVLFGAAGATANIDLGRQIHCVLM-KTESESDLILENCLISMYAKCGVIDN 385
            + P   TF  L  A   +  +  G +   ++  K     +L    C++ +  + G +D+
Sbjct: 595 EIHPDEITFISLLCACSKSGMVTEGLEYFNIMKNKYNLTPNLKHYACVVDILGRAGQLDD 654

Query: 386 AYNIFSNMVSR-DLVSWNSMV 405
           AY+   +M  R D   W +++
Sbjct: 655 AYDFIQDMPIRPDAAIWGALL 675



 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 55/199 (27%), Positives = 94/199 (47%), Gaps = 14/199 (7%)

Query: 9   SLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEM 68
           S V+   S I  YSK   +D A  +F+ +  +NVVS+ +++ G   N R  EA   F +M
Sbjct: 433 SHVIVSNSLIDMYSKCKCVDNALEVFRNISGKNVVSWTSLILGLRINNRSFEALLFFRQM 492

Query: 69  PER---NVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARK 125
            E    N V+  +++   A  G +   +++      R  V ++  +   I +  +   RK
Sbjct: 493 KESMKPNSVTLISVLSACARIGALMRGKEIHAH-ALRTGVGFDGFLPNAILDMYVRCGRK 551

Query: 126 V-----FNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNV----VTWTSMISGY 176
           V     FNS   K+V +WN ++ GY +      A+ LF++M E  +    +T+ S++   
Sbjct: 552 VPALNQFNSQK-KDVTAWNILLTGYAQQGQAKLAVELFDKMLELEIHPDEITFISLLCAC 610

Query: 177 CRAGEVEEGYCLFRRMPRK 195
            ++G V EG   F  M  K
Sbjct: 611 SKSGMVTEGLEYFNIMKNK 629


>gi|359482518|ref|XP_002279880.2| PREDICTED: uncharacterized protein LOC100266920 [Vitis vinifera]
          Length = 1753

 Score =  295 bits (755), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 187/618 (30%), Positives = 325/618 (52%), Gaps = 51/618 (8%)

Query: 18   ITKYSKRGFIDEAKALFQLMPQR---NVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVV 74
            ++ Y+  G + +A+ +F++ P     N++ +N++L   + +G   EA  ++  M +  V 
Sbjct: 911  VSVYAGFGLVSDAQRVFEVSPIECFSNLLLWNSILRANVAHGYCEEALEIYCRMRKLGVS 970

Query: 75   S------WTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMV----VGLI-RNGELNEA 123
            +           C L  + ++C  R +   + E     WN  V    +G+  + G +++A
Sbjct: 971  ADGFTFPLVIRACALMGSRKLC--RSVHGHVVEMGF-QWNLHVGNELMGMYGKIGRMDDA 1027

Query: 124  RKVFNSMPIKNVISWNAMIAGYV---ECC-------MMGEAIVLFEEMEERNVVTWTSMI 173
            RKVF  M +++ +SWN M++GY    +C        MMG A +      E N+VTWTS++
Sbjct: 1028 RKVFERMAVRSCVSWNTMVSGYALNYDCHGASEMFRMMGSAGL------EPNLVTWTSLL 1081

Query: 174  SGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIG-----GFAWNGFHKESLLLFIEMKGICD 228
            S + R G+  E   LF RM  + + +    +            F +  ++    +KG  +
Sbjct: 1082 SSHARCGQHVETMELFGRMRMRGIGATAEALAVVLSVSVDLAAFDEGKVIHGYVVKGGFE 1141

Query: 229  NGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYL 288
            N     +   NS+I  Y + G +  A+ LF  +  ++ +SW ++I  Y  +G    A+ +
Sbjct: 1142 N----YLFVKNSLICLYGKHGNVNAARILFLEIKTKNIVSWNALISSYADLGWCDEAFAI 1197

Query: 289  FHNMPDRD--------AVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFG 340
            F  +   D         V+W+A+I G        EA  LF  M+   V   + T + +  
Sbjct: 1198 FLQLEKTDEYPMVRPNVVSWSAVIGGFASKGQGEEALELFRRMQLAKVKANSVTIASVLS 1257

Query: 341  AAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVS 400
                 A + LGR+IH  ++++  + ++++ N LI+MY K G       +F  + ++DL+S
Sbjct: 1258 VCAELAALHLGREIHGHVVRSLMDGNILVGNGLINMYTKSGSFKEGNLVFEKIENKDLIS 1317

Query: 401  WNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMF 460
            WN+MV G+  HGL    ++ F+ M++ G  P+ VTF+ +LSACSHAGLV+ G ELF+ M 
Sbjct: 1318 WNTMVAGYGIHGLGENAIRTFDQMIKDGFEPDGVTFVAVLSACSHAGLVAEGRELFDKMI 1377

Query: 461  DVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEI 520
              ++++P  EHY  M++LLGRAG ++EA + V  +P EP+  +WGALL +C   + N E+
Sbjct: 1378 KEFRVEPQMEHYACMVDLLGRAGLLQEASKVVKSMPVEPNACVWGALLNSCRMHK-NTEV 1436

Query: 521  AEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNG 580
            AE  A ++  L+   A ++++L NIYAASGR  +  K+R+    KG++K PG SW+    
Sbjct: 1437 AEETASQIFNLNSEIAGSYMLLSNIYAASGRWEDSAKVRISAKTKGLKKTPGQSWIQVKK 1496

Query: 581  GIQMFLSGDKIPAQVAEI 598
             + MF +G+   A++ E+
Sbjct: 1497 KVYMFSAGNTQHAELEEV 1514



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 74/268 (27%), Positives = 131/268 (48%), Gaps = 22/268 (8%)

Query: 16   SSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLF------EEMP 69
            S I  Y K G ++ A+ LF  +  +N+VS+NA++S +   G   EA  +F      +E P
Sbjct: 1149 SLICLYGKHGNVNAARILFLEIKTKNIVSWNALISSYADLGWCDEAFAIFLQLEKTDEYP 1208

Query: 70   --ERNVVSWTAMICGLADAGRVCEARKLFEEMP----ERNVVSWNSMVVGLIRNGELNEA 123
                NVVSW+A+I G A  G+  EA +LF  M     + N V+  S++        L+  
Sbjct: 1209 MVRPNVVSWSAVIGGFASKGQGEEALELFRRMQLAKVKANSVTIASVLSVCAELAALHLG 1268

Query: 124  RK----VFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRA 179
            R+    V  S+   N++  N +I  Y +     E  ++FE++E +++++W +M++GY   
Sbjct: 1269 REIHGHVVRSLMDGNILVGNGLINMYTKSGSFKEGNLVFEKIENKDLISWNTMVAGYGIH 1328

Query: 180  GEVEEGYCLFRRMPRK----NVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNV 235
            G  E     F +M +     + V++ A++   +  G   E   LF +M  I +      +
Sbjct: 1329 GLGENAIRTFDQMIKDGFEPDGVTFVAVLSACSHAGLVAEGRELFDKM--IKEFRVEPQM 1386

Query: 236  QSCNSMINGYIRFGRLEEAQNLFDTVPV 263
            +    M++   R G L+EA  +  ++PV
Sbjct: 1387 EHYACMVDLLGRAGLLQEASKVVKSMPV 1414



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 60/205 (29%), Positives = 104/205 (50%), Gaps = 20/205 (9%)

Query: 11   VVHLTSSITKYSKRGFIDEAKALF-QL-------MPQRNVVSYNAMLSGFLQNGRLSEAR 62
            +V   + I+ Y+  G+ DEA A+F QL       M + NVVS++A++ GF   G+  EA 
Sbjct: 1175 IVSWNALISSYADLGWCDEAFAIFLQLEKTDEYPMVRPNVVSWSAVIGGFASKGQGEEAL 1234

Query: 63   RLFEEMP----ERNVVSWTAMICGLADAGRVCEARKL----FEEMPERNVVSWNSMVVGL 114
             LF  M     + N V+  +++   A+   +   R++       + + N++  N ++   
Sbjct: 1235 ELFRRMQLAKVKANSVTIASVLSVCAELAALHLGREIHGHVVRSLMDGNILVGNGLINMY 1294

Query: 115  IRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEME----ERNVVTWT 170
             ++G   E   VF  +  K++ISWN M+AGY    +   AI  F++M     E + VT+ 
Sbjct: 1295 TKSGSFKEGNLVFEKIENKDLISWNTMVAGYGIHGLGENAIRTFDQMIKDGFEPDGVTFV 1354

Query: 171  SMISGYCRAGEVEEGYCLFRRMPRK 195
            +++S    AG V EG  LF +M ++
Sbjct: 1355 AVLSACSHAGLVAEGRELFDKMIKE 1379



 Score = 48.9 bits (115), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 55/237 (23%), Positives = 102/237 (43%), Gaps = 37/237 (15%)

Query: 350  LGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVS-----RDLVSWNSM 404
            L +QIH  ++ T S     L   ++S+YA  G++ +A  +F   VS      +L+ WNS+
Sbjct: 887  LSQQIHSQIIVTGSHRSAFLAARVVSVYAGFGLVSDAQRVFE--VSPIECFSNLLLWNSI 944

Query: 405  VMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACS-----------HAGLVSRGW 453
            +     HG   E L+++  M + G   +  TF  ++ AC+           H  +V  G+
Sbjct: 945  LRANVAHGYCEEALEIYCRMRKLGVSADGFTFPLVIRACALMGSRKLCRSVHGHVVEMGF 1004

Query: 454  ELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGF 513
            +        + +  G E    ++ + G+ G++ +A +   R+        W  ++     
Sbjct: 1005 Q--------WNLHVGNE----LMGMYGKIGRMDDARKVFERMAVRSCVS-WNTMVSGYAL 1051

Query: 514  ---CEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGV 567
               C G +E+        LE  P N      L + +A  G+HVE  +L   M ++G+
Sbjct: 1052 NYDCHGASEMFRMMGSAGLE--P-NLVTWTSLLSSHARCGQHVETMELFGRMRMRGI 1105


>gi|356518597|ref|XP_003527965.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g21470-like [Glycine max]
          Length = 535

 Score =  295 bits (755), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 163/442 (36%), Positives = 255/442 (57%), Gaps = 8/442 (1%)

Query: 134 NVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMP 193
           +VI   A++  Y +C ++ +A  LF+ M ERNVVTW +MISGY R G+ E  Y +F +M 
Sbjct: 80  DVIIGTALLTTYSKCGVVRDARNLFDTMPERNVVTWNAMISGYLRNGDTESAYLVFEKMQ 139

Query: 194 RKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEE 253
            K  V+W+ MIGGFA NG    +  LF E+     N     V +   M++GY R G +E 
Sbjct: 140 GKTQVTWSQMIGGFARNGDIATARRLFDEVPHELKN-----VVTWTVMVDGYARIGEMEA 194

Query: 254 AQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELF 313
           A+ +F+ +P R+   W+SMI GY   G V+ A  +F  +P R+   W +MI+G VQN   
Sbjct: 195 AREVFEMMPERNCFVWSSMIHGYFKKGNVTEAAAVFDWVPVRNLEIWNSMIAGYVQNGFG 254

Query: 314 VEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCL 373
            +A   F  M A G  P   T   +  A     ++D+G+QIH ++       +  + + L
Sbjct: 255 EKALLAFEGMGAEGFEPDEFTVVSVLSACAQLGHLDVGKQIHHMIEHKGIVVNPFVLSGL 314

Query: 374 ISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNS 433
           + MYAKCG + NA  +F     +++  WN+M+ GF+ +G  +E L+ F  M ES   P+ 
Sbjct: 315 VDMYAKCGDLVNARLVFEGFTEKNIFCWNAMISGFAINGKCSEVLEFFGRMEESNIRPDG 374

Query: 434 VTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVL 493
           +TFL +LSAC+H GLV+   E+ + M + Y+I+ G +HY  M++LLGRAG++K+A + ++
Sbjct: 375 ITFLTVLSACAHRGLVTEALEVISKM-EGYRIEIGIKHYGCMVDLLGRAGRLKDAYDLIV 433

Query: 494 RLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAH-VVLCNIYAASGRH 552
           R+P +P+  + GA+LGAC     +  +AE   K + E     A +H V+L NIYAAS + 
Sbjct: 434 RMPMKPNDTVLGAMLGACRI-HSDMNMAEQVMKLICEEPVTGASSHNVLLSNIYAASEKW 492

Query: 553 VEEHKLRMDMGLKGVRKVPGCS 574
            +  +++      G +++PGCS
Sbjct: 493 EKAERMKRITVDGGSQRIPGCS 514



 Score =  178 bits (451), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 113/392 (28%), Positives = 189/392 (48%), Gaps = 40/392 (10%)

Query: 8   KSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEE 67
           +S V+  T+ +T YSK G + +A+ LF  MP+RNVV++NAM+SG+L+NG    A  +FE+
Sbjct: 78  ESDVIIGTALLTTYSKCGVVRDARNLFDTMPERNVVTWNAMISGYLRNGDTESAYLVFEK 137

Query: 68  MPERNVVSWTAMICGLADAGRVCEARKLFEEMPE--RNVVSWNSMVVGLIRNGELNEARK 125
           M  +  V+W+ MI G A  G +  AR+LF+E+P   +NVV+W  MV G  R GE+  AR+
Sbjct: 138 MQGKTQVTWSQMIGGFARNGDIATARRLFDEVPHELKNVVTWTVMVDGYARIGEMEAARE 197

Query: 126 VFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEG 185
           VF  MP +N   W++MI GY +   + EA  +F+ +  RN+  W SMI+GY +       
Sbjct: 198 VFEMMPERNCFVWSSMIHGYFKKGNVTEAAAVFDWVPVRNLEIWNSMIAGYVQ------- 250

Query: 186 YCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGY 245
                                   NGF +++LL F   +G+   G   +  +  S+++  
Sbjct: 251 ------------------------NGFGEKALLAF---EGMGAEGFEPDEFTVVSVLSAC 283

Query: 246 IRFGRLEEAQNLFDTVP----VRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWT 301
            + G L+  + +   +     V +    + ++D Y   G + NA  +F    +++   W 
Sbjct: 284 AQLGHLDVGKQIHHMIEHKGIVVNPFVLSGLVDMYAKCGDLVNARLVFEGFTEKNIFCWN 343

Query: 302 AMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKT 361
           AMISG   N    E    F  M    + P   TF  +  A      +    ++   +   
Sbjct: 344 AMISGFAINGKCSEVLEFFGRMEESNIRPDGITFLTVLSACAHRGLVTEALEVISKMEGY 403

Query: 362 ESESDLILENCLISMYAKCGVIDNAYNIFSNM 393
             E  +    C++ +  + G + +AY++   M
Sbjct: 404 RIEIGIKHYGCMVDLLGRAGRLKDAYDLIVRM 435



 Score =  115 bits (287), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 74/269 (27%), Positives = 131/269 (48%), Gaps = 12/269 (4%)

Query: 230 GNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLF 289
           G+  +V    +++  Y + G + +A+NLFDT+P R+ ++W +MI GYL  G   +AY +F
Sbjct: 76  GSESDVIIGTALLTTYSKCGVVRDARNLFDTMPERNVVTWNAMISGYLRNGDTESAYLVF 135

Query: 290 HNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANID 349
             M  +  V W+ MI G  +N     A  LF E+  H +  +  T++V+         ++
Sbjct: 136 EKMQGKTQVTWSQMIGGFARNGDIATARRLFDEV-PHELKNV-VTWTVMVDGYARIGEME 193

Query: 350 LGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFS 409
             R++     +   E +  + + +I  Y K G +  A  +F  +  R+L  WNSM+ G+ 
Sbjct: 194 AAREV----FEMMPERNCFVWSSMIHGYFKKGNVTEAAAVFDWVPVRNLEIWNSMIAGYV 249

Query: 410 HHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGP 469
            +G   + L  FE M   G  P+  T + +LSAC+  G +  G ++ + M +   I   P
Sbjct: 250 QNGFGEKALLAFEGMGAEGFEPDEFTVVSVLSACAQLGHLDVGKQIHH-MIEHKGIVVNP 308

Query: 470 EHYVSMINLLGRAGKIKEAEEFVLRLPFE 498
                ++++  + G +  A     RL FE
Sbjct: 309 FVLSGLVDMYAKCGDLVNA-----RLVFE 332



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 69/275 (25%), Positives = 138/275 (50%), Gaps = 15/275 (5%)

Query: 2   SERNHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEA 61
            E  H    VV  T  +  Y++ G ++ A+ +F++MP+RN   +++M+ G+ + G ++EA
Sbjct: 167 DEVPHELKNVVTWTVMVDGYARIGEMEAAREVFEMMPERNCFVWSSMIHGYFKKGNVTEA 226

Query: 62  RRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMP----ERNVVSWNSMVVGLIRN 117
             +F+ +P RN+  W +MI G    G   +A   FE M     E +  +  S++    + 
Sbjct: 227 AAVFDWVPVRNLEIWNSMIAGYVQNGFGEKALLAFEGMGAEGFEPDEFTVVSVLSACAQL 286

Query: 118 GELNEARKVFNSMPIKNVISWNAMIAG----YVECCMMGEAIVLFEEMEERNVVTWTSMI 173
           G L+  +++ + +  K ++    +++G    Y +C  +  A ++FE   E+N+  W +MI
Sbjct: 287 GHLDVGKQIHHMIEHKGIVVNPFVLSGLVDMYAKCGDLVNARLVFEGFTEKNIFCWNAMI 346

Query: 174 SGYCRAGEVEEGYCLFRRMPRKNV----VSWTAMIGGFAWNGFHKESLLLFIEMKGICDN 229
           SG+   G+  E    F RM   N+    +++  ++   A  G   E+L +  +M+G    
Sbjct: 347 SGFAINGKCSEVLEFFGRMEESNIRPDGITFLTVLSACAHRGLVTEALEVISKMEGY--- 403

Query: 230 GNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVR 264
                ++    M++   R GRL++A +L   +P++
Sbjct: 404 RIEIGIKHYGCMVDLLGRAGRLKDAYDLIVRMPMK 438



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 58/226 (25%), Positives = 106/226 (46%), Gaps = 12/226 (5%)

Query: 300 WTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLM 359
           W   I   +Q      A   + + R  GV   ++   +LF A  +   +   + +H   +
Sbjct: 15  WFCSIRNHIQQGSLRCALLAYKQTRHEGVYD-SSVAPLLFKACASLPFLHYVKALHAESI 73

Query: 360 KTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLK 419
           K  SESD+I+   L++ Y+KCGV+ +A N+F  M  R++V+WN+M+ G+  +G       
Sbjct: 74  KAGSESDVIIGTALLTTYSKCGVVRDARNLFDTMPERNVVTWNAMISGYLRNGDTESAYL 133

Query: 420 VFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLL 479
           VFE M         VT+  ++   +  G ++    LF+ +    K       +  M++  
Sbjct: 134 VFEKM----QGKTQVTWSQMIGGFARNGDIATARRLFDEVPHELK---NVVTWTVMVDGY 186

Query: 480 GRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAA 525
            R G+++ A E    +P E +  +W +++    F +GN  + E AA
Sbjct: 187 ARIGEMEAAREVFEMMP-ERNCFVWSSMIHGY-FKKGN--VTEAAA 228


>gi|449432255|ref|XP_004133915.1| PREDICTED: pentatricopeptide repeat-containing protein At2g45350,
           chloroplastic-like [Cucumis sativus]
 gi|449480068|ref|XP_004155790.1| PREDICTED: pentatricopeptide repeat-containing protein At2g45350,
           chloroplastic-like [Cucumis sativus]
          Length = 638

 Score =  295 bits (755), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 167/468 (35%), Positives = 261/468 (55%), Gaps = 10/468 (2%)

Query: 134 NVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMP 193
           N+   N +IA Y+ C  +  A  +F+ M  ++ V++ SMI GY ++G ++    LF  MP
Sbjct: 159 NLFLLNCLIAMYLRCGDIEFARQVFDRMPIQDSVSYNSMIDGYVKSGTIDLARELFDSMP 218

Query: 194 --RKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRL 251
              KN++SW +M+GGFA     K+ + L +E+    +     ++ S N++I G+ + GR+
Sbjct: 219 LEDKNLISWNSMLGGFAQT---KDGIGLALEL---FEKMPERDLVSWNTIIGGFAKCGRI 272

Query: 252 EEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNE 311
           E A +LF+ +P RD ISW++MIDGY  +G +  A  LF  MPD+D VA+  +++G  QN 
Sbjct: 273 EFAHSLFNRMPKRDVISWSNMIDGYAKLGDIKVARTLFDEMPDKDVVAFNTIMAGYAQNG 332

Query: 312 LFVEATYLFMEM-RAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILE 370
            + EA  +F EM R   + P   T  V   A     +++    +H   ++        + 
Sbjct: 333 YYTEALEIFHEMQRQSNLSPDETTLVVALSAISQLGHVEKAASMHNYFLENGISVTGKVA 392

Query: 371 NCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTH 430
             LI MY+KCG I+NA  IF  +  + +  WN+M+ G + +GL      +   M      
Sbjct: 393 VALIDMYSKCGSIENAILIFDGVDQKGIDHWNAMISGMARNGLGKLAFGMLLEMHRLSVK 452

Query: 431 PNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEE 490
           P+ +TF+G+L+AC+HAGLV  G   F  M  V+K++P  +HY  M+++LG+AG ++ A +
Sbjct: 453 PDGITFIGVLNACAHAGLVKEGLICFELMRKVHKLEPKLQHYGCMVDILGKAGLVEGALK 512

Query: 491 FVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASG 550
           F+  +P EP+  IW  LL AC   E N  I E  AK L+ +D  N+ ++V+L NIYA  G
Sbjct: 513 FIEEMPIEPNDIIWRTLLSACQNHE-NFTIGELIAKHLMTMDSCNSSSYVLLSNIYARLG 571

Query: 551 RHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
                 K+RM M  + + KVPGCSW+   G +  FL  DK    V+EI
Sbjct: 572 LWSAASKVRMMMKKQNLTKVPGCSWIELEGVVHEFLVRDKSHPYVSEI 619



 Score =  177 bits (449), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 109/400 (27%), Positives = 212/400 (53%), Gaps = 17/400 (4%)

Query: 26  FIDEAKALFQLMPQ----RNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMIC 81
            ++E K +  L+ +     N+   N +++ +L+ G +  AR++F+ MP ++ VS+ +MI 
Sbjct: 140 LVEEGKQIHGLLMKLEIGSNLFLLNCLIAMYLRCGDIEFARQVFDRMPIQDSVSYNSMID 199

Query: 82  GLADAGRVCEARKLFEEMP--ERNVVSWNSMVVGLIRNGE-LNEARKVFNSMPIKNVISW 138
           G   +G +  AR+LF+ MP  ++N++SWNSM+ G  +  + +  A ++F  MP ++++SW
Sbjct: 200 GYVKSGTIDLARELFDSMPLEDKNLISWNSMLGGFAQTKDGIGLALELFEKMPERDLVSW 259

Query: 139 NAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVV 198
           N +I G+ +C  +  A  LF  M +R+V++W++MI GY + G+++    LF  MP K+VV
Sbjct: 260 NTIIGGFAKCGRIEFAHSLFNRMPKRDVISWSNMIDGYAKLGDIKVARTLFDEMPDKDVV 319

Query: 199 SWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLF 258
           ++  ++ G+A NG++ E+L +F EM+    +  + +  +    ++   + G +E+A ++ 
Sbjct: 320 AFNTIMAGYAQNGYYTEALEIFHEMQR--QSNLSPDETTLVVALSAISQLGHVEKAASMH 377

Query: 259 DTVPVRDEISWT-----SMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELF 313
           +   + + IS T     ++ID Y   G + NA  +F  +  +    W AMISG+ +N L 
Sbjct: 378 NYF-LENGISVTGKVAVALIDMYSKCGSIENAILIFDGVDQKGIDHWNAMISGMARNGLG 436

Query: 314 VEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTES-ESDLILENC 372
             A  + +EM    V P   TF  +  A      +  G     ++ K    E  L    C
Sbjct: 437 KLAFGMLLEMHRLSVKPDGITFIGVLNACAHAGLVKEGLICFELMRKVHKLEPKLQHYGC 496

Query: 373 LISMYAKCGVIDNAYNIFSNM-VSRDLVSWNSMVMGFSHH 411
           ++ +  K G+++ A      M +  + + W +++    +H
Sbjct: 497 MVDILGKAGLVEGALKFIEEMPIEPNDIIWRTLLSACQNH 536



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 102/357 (28%), Positives = 163/357 (45%), Gaps = 52/357 (14%)

Query: 7   PKSLVVHLTSSITKYSKRGFIDEAKALFQLMP--QRNVVSYNAMLSGFLQNGR-LSEARR 63
           P    V   S I  Y K G ID A+ LF  MP   +N++S+N+ML GF Q    +  A  
Sbjct: 187 PIQDSVSYNSMIDGYVKSGTIDLARELFDSMPLEDKNLISWNSMLGGFAQTKDGIGLALE 246

Query: 64  LFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEA 123
           LFE+MPER++VSW  +I G A  GR+  A  LF  MP+R+V+SW++M+ G  + G++  A
Sbjct: 247 LFEKMPERDLVSWNTIIGGFAKCGRIEFAHSLFNRMPKRDVISWSNMIDGYAKLGDIKVA 306

Query: 124 RKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEME--------ERNVVTWTSMISG 175
           R +F+ MP K+V+++N ++AGY +     EA+ +F EM+        E  +V   S IS 
Sbjct: 307 RTLFDEMPDKDVVAFNTIMAGYAQNGYYTEALEIFHEMQRQSNLSPDETTLVVALSAISQ 366

Query: 176 --------------------------------YCRAGEVEEGYCLFRRMPRKNVVSWTAM 203
                                           Y + G +E    +F  + +K +  W AM
Sbjct: 367 LGHVEKAASMHNYFLENGISVTGKVAVALIDMYSKCGSIENAILIFDGVDQKGIDHWNAM 426

Query: 204 IGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPV 263
           I G A NG  K +  + +EM  +    +         ++N     G ++E    F+ +  
Sbjct: 427 ISGMARNGLGKLAFGMLLEMHRLSVKPDGITFI---GVLNACAHAGLVKEGLICFELMRK 483

Query: 264 RDEIS-----WTSMIDGYLSVGQVSNAYYLFHNMP-DRDAVAWTAMISGLVQNELFV 314
             ++      +  M+D     G V  A      MP + + + W  ++S    +E F 
Sbjct: 484 VHKLEPKLQHYGCMVDILGKAGLVEGALKFIEEMPIEPNDIIWRTLLSACQNHENFT 540



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 78/279 (27%), Positives = 126/279 (45%), Gaps = 25/279 (8%)

Query: 291 NMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDL 350
           N  D D   W A+I         V A  LF  M  +G      +FS++  A      ++ 
Sbjct: 84  NHLDDDPFLWNAVIKSYSHGNEPVRALVLFCMMLENGFCVDKFSFSLILKACARVCLVEE 143

Query: 351 GRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSH 410
           G+QIH +LMK E  S+L L NCLI+MY +CG I+ A  +F  M  +D VS+NSM+ G+  
Sbjct: 144 GKQIHGLLMKLEIGSNLFLLNCLIAMYLRCGDIEFARQVFDRMPIQDSVSYNSMIDGYVK 203

Query: 411 HGLANETLKVFESM-LESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGP 469
            G  +   ++F+SM LE     +  + LG  +       +    ELF  M         P
Sbjct: 204 SGTIDLARELFDSMPLEDKNLISWNSMLGGFAQTKDG--IGLALELFEKM---------P 252

Query: 470 EH----YVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAA 525
           E     + ++I    + G+I+ A     R+P + D   W  ++      +G A++ +   
Sbjct: 253 ERDLVSWNTIIGGFAKCGRIEFAHSLFNRMP-KRDVISWSNMI------DGYAKLGDIKV 305

Query: 526 KRLL--ELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDM 562
            R L  E+   +  A   +   YA +G + E  ++  +M
Sbjct: 306 ARTLFDEMPDKDVVAFNTIMAGYAQNGYYTEALEIFHEM 344


>gi|357502643|ref|XP_003621610.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355496625|gb|AES77828.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 881

 Score =  295 bits (755), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 188/643 (29%), Positives = 313/643 (48%), Gaps = 59/643 (9%)

Query: 9   SLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEM 68
           S VV  T+ +  YS    +D A  +F  MP+RN V ++A+++G+++N R +E  +L++ M
Sbjct: 203 SDVVTGTALVDMYSTCKKLDHAFNIFCEMPERNSVCWSAVIAGYVRNDRFTEGLKLYKVM 262

Query: 69  PER----------------------------------------NVVSWTAMICGLADAGR 88
            +                                         N+V  TA +   A   R
Sbjct: 263 LDEGMGVSQATFASAFRSCAGLSAFELGTQLHAYALKTNFGYDNIVG-TATLDMYAKCDR 321

Query: 89  VCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSM----------PIKNVISW 138
           + +ARK+F   P     S N+++VG  R  ++ EA ++F S+           +   ++ 
Sbjct: 322 MVDARKVFNTFPNPTRQSHNALIVGYARQDQVLEALEIFRSLQKSYLDFDEISLSGALTA 381

Query: 139 NAMIAGYVECCMM-GEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNV 197
            + I GY+E   + G A+    +    N+    +++  Y + G + E   +F  M  K+ 
Sbjct: 382 CSAIKGYLEGIQLHGLAVKCGLDF---NICVANTILDMYAKCGALMEACLIFDDMEIKDA 438

Query: 198 VSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGY--IRFGRLEEAQ 255
           VSW A+I     N   +E+L LF+ M       ++    S      G   + +G +E   
Sbjct: 439 VSWNAIIAAHEQNEHVEETLALFVSMLRSTMEPDDYTFGSVVKACAGKKALNYG-MEVHG 497

Query: 256 NLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVE 315
            +  +    D    +++ID Y   G +  A  +   + +R  V+W ++ISG    +    
Sbjct: 498 RVIKSGMGLDWFVGSAIIDMYCKCGMLVEAEKIHERLEERTTVSWNSIISGFSSEKQGEN 557

Query: 316 ATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLIS 375
           A   F  M   GV P N T++ +       A ++LG+QIH  ++K +  SD+ + + ++ 
Sbjct: 558 ALSYFSRMLQVGVIPDNFTYATVLDICANLATVELGKQIHGQILKLQLHSDVYIASTIVD 617

Query: 376 MYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVT 435
           MY+KCG + ++  +F     RD V+W++M+  +++HGL  + +K+FE M      PN   
Sbjct: 618 MYSKCGNMQDSRIMFEKAPKRDYVTWSAMICAYAYHGLGEDAIKLFEEMQLQNVKPNHTI 677

Query: 436 FLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRL 495
           F+ +L AC+H G V +G   F  M   Y + P  EHY  M++LLGR+G++ EA E +  +
Sbjct: 678 FISVLRACAHMGFVDKGLHYFREMRSHYGLDPQMEHYSCMVDLLGRSGQVNEALELIESM 737

Query: 496 PFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEE 555
           PFE D  IW  LLG C   +GN E+AE AA  LL+LDP ++ A+V+L N+YA +G   E 
Sbjct: 738 PFEADDVIWRTLLGICRL-QGNVEVAEKAANSLLQLDPQDSSAYVLLSNVYAIAGMWGEV 796

Query: 556 HKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
            K+R  M    ++K PGCSW+     +  FL GDK   +  EI
Sbjct: 797 AKIRSFMKNYKLKKEPGCSWIQVRDEVHAFLVGDKAHPRSEEI 839



 Score =  175 bits (443), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 127/464 (27%), Positives = 223/464 (48%), Gaps = 20/464 (4%)

Query: 46  NAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVV 105
           N +L  + +   L+ A  +F++MP+R+V+SW  MI G A  G +  A+ LF+ MPER+VV
Sbjct: 77  NCLLQFYCKCLNLNYAFNVFDKMPQRDVISWNTMIFGYAGVGNMEFAQFLFDSMPERDVV 136

Query: 106 SWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEME--- 162
           SWNSM+   ++NG   ++ ++F  M +  +    A  A  ++ C   E   L  ++    
Sbjct: 137 SWNSMLSCYLQNGFHRKSIEIFTKMRLLEIQHDYATFAVVLKACTGIEDYGLGLQVHCLA 196

Query: 163 -----ERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESL 217
                + +VVT T+++  Y    +++  + +F  MP +N V W+A+I G+  N    E L
Sbjct: 197 IQMGFDSDVVTGTALVDMYSTCKKLDHAFNIFCEMPERNSVCWSAVIAGYVRNDRFTEGL 256

Query: 218 LLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNL----FDTVPVRDEISWTSMI 273
            L+   K + D G   +  +  S           E    L      T    D I  T+ +
Sbjct: 257 KLY---KVMLDEGMGVSQATFASAFRSCAGLSAFELGTQLHAYALKTNFGYDNIVGTATL 313

Query: 274 DGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNA 333
           D Y    ++ +A  +F+  P+    +  A+I G  + +  +EA  +F  ++   +     
Sbjct: 314 DMYAKCDRMVDARKVFNTFPNPTRQSHNALIVGYARQDQVLEALEIFRSLQKSYLDFDEI 373

Query: 334 TFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNM 393
           + S    A  A      G Q+H + +K   + ++ + N ++ MYAKCG +  A  IF +M
Sbjct: 374 SLSGALTACSAIKGYLEGIQLHGLAVKCGLDFNICVANTILDMYAKCGALMEACLIFDDM 433

Query: 394 VSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGW 453
             +D VSWN+++     +    ETL +F SML S   P+  TF  ++ AC+    ++ G 
Sbjct: 434 EIKDAVSWNAIIAAHEQNEHVEETLALFVSMLRSTMEPDDYTFGSVVKACAGKKALNYGM 493

Query: 454 ELFNAMFDVYKIQPGPEHYV--SMINLLGRAGKIKEAEEFVLRL 495
           E+      V K   G + +V  ++I++  + G + EAE+   RL
Sbjct: 494 EVHGR---VIKSGMGLDWFVGSAIIDMYCKCGMLVEAEKIHERL 534



 Score =  171 bits (433), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 152/633 (24%), Positives = 274/633 (43%), Gaps = 97/633 (15%)

Query: 21  YSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMI 80
           Y K   ++ A  +F  MPQR+V+S+N M+ G+   G +  A+ LF+ MPER+VVSW +M+
Sbjct: 83  YCKCLNLNYAFNVFDKMPQRDVISWNTMIFGYAGVGNMEFAQFLFDSMPERDVVSWNSML 142

Query: 81  CGLADAGRVCEARKLFEEMP----ERNVVSWNSMVVGLIRNGELNEARKVFNSMPIK--- 133
                 G   ++ ++F +M     + +  ++  ++       +     +V + + I+   
Sbjct: 143 SCYLQNGFHRKSIEIFTKMRLLEIQHDYATFAVVLKACTGIEDYGLGLQV-HCLAIQMGF 201

Query: 134 --NVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRR 191
             +V++  A++  Y  C  +  A  +F EM ERN V W+++I+GY R     EG  L++ 
Sbjct: 202 DSDVVTGTALVDMYSTCKKLDHAFNIFCEMPERNSVCWSAVIAGYVRNDRFTEGLKLYKV 261

Query: 192 MPRKNV-VSWTAMIGGF----------AWNGFHKESL-----------LLFIEMKGICD- 228
           M  + + VS       F               H  +L              ++M   CD 
Sbjct: 262 MLDEGMGVSQATFASAFRSCAGLSAFELGTQLHAYALKTNFGYDNIVGTATLDMYAKCDR 321

Query: 229 ---------NGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVR----DEISWT----- 270
                       N   QS N++I GY R  ++ EA  +F ++       DEIS +     
Sbjct: 322 MVDARKVFNTFPNPTRQSHNALIVGYARQDQVLEALEIFRSLQKSYLDFDEISLSGALTA 381

Query: 271 ------------------------------SMIDGYLSVGQVSNAYYLFHNMPDRDAVAW 300
                                         +++D Y   G +  A  +F +M  +DAV+W
Sbjct: 382 CSAIKGYLEGIQLHGLAVKCGLDFNICVANTILDMYAKCGALMEACLIFDDMEIKDAVSW 441

Query: 301 TAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMK 360
            A+I+   QNE   E   LF+ M    + P + TF  +  A      ++ G ++H  ++K
Sbjct: 442 NAIIAAHEQNEHVEETLALFVSMLRSTMEPDDYTFGSVVKACAGKKALNYGMEVHGRVIK 501

Query: 361 TESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKV 420
           +    D  + + +I MY KCG++  A  I   +  R  VSWNS++ GFS        L  
Sbjct: 502 SGMGLDWFVGSAIIDMYCKCGMLVEAEKIHERLEERTTVSWNSIISGFSSEKQGENALSY 561

Query: 421 FESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYV--SMINL 478
           F  ML+ G  P++ T+  +L  C++   V  G ++      + K+Q   + Y+  +++++
Sbjct: 562 FSRMLQVGVIPDNFTYATVLDICANLATVELGKQIHG---QILKLQLHSDVYIASTIVDM 618

Query: 479 LGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNA-P 537
             + G ++++     + P + D+  W A++ A  +      + E A K   E+   N  P
Sbjct: 619 YSKCGNMQDSRIMFEKAP-KRDYVTWSAMICAYAY----HGLGEDAIKLFEEMQLQNVKP 673

Query: 538 AHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKV 570
            H +  ++  A       H   +D GL   R++
Sbjct: 674 NHTIFISVLRACA-----HMGFVDKGLHYFREM 701



 Score =  163 bits (412), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 90/318 (28%), Positives = 168/318 (52%), Gaps = 9/318 (2%)

Query: 132 IKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRR 191
           +  V   N ++  Y +C  +  A  +F++M +R+V++W +MI GY   G +E    LF  
Sbjct: 70  VPTVFVSNCLLQFYCKCLNLNYAFNVFDKMPQRDVISWNTMIFGYAGVGNMEFAQFLFDS 129

Query: 192 MPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRL 251
           MP ++VVSW +M+  +  NGFH++S+ +F +M+ +    +            G   +G  
Sbjct: 130 MPERDVVSWNSMLSCYLQNGFHRKSIEIFTKMRLLEIQHDYATFAVVLKACTGIEDYGLG 189

Query: 252 EEAQNL-----FDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISG 306
            +   L     FD+    D ++ T+++D Y +  ++ +A+ +F  MP+R++V W+A+I+G
Sbjct: 190 LQVHCLAIQMGFDS----DVVTGTALVDMYSTCKKLDHAFNIFCEMPERNSVCWSAVIAG 245

Query: 307 LVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESD 366
            V+N+ F E   L+  M   G+    ATF+  F +    +  +LG Q+H   +KT    D
Sbjct: 246 YVRNDRFTEGLKLYKVMLDEGMGVSQATFASAFRSCAGLSAFELGTQLHAYALKTNFGYD 305

Query: 367 LILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLE 426
            I+    + MYAKC  + +A  +F+   +    S N++++G++      E L++F S+ +
Sbjct: 306 NIVGTATLDMYAKCDRMVDARKVFNTFPNPTRQSHNALIVGYARQDQVLEALEIFRSLQK 365

Query: 427 SGTHPNSVTFLGILSACS 444
           S    + ++  G L+ACS
Sbjct: 366 SYLDFDEISLSGALTACS 383



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 91/333 (27%), Positives = 163/333 (48%), Gaps = 13/333 (3%)

Query: 239 NSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAV 298
           N ++  Y +   L  A N+FD +P RD ISW +MI GY  VG +  A +LF +MP+RD V
Sbjct: 77  NCLLQFYCKCLNLNYAFNVFDKMPQRDVISWNTMIFGYAGVGNMEFAQFLFDSMPERDVV 136

Query: 299 AWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVL 358
           +W +M+S  +QN    ++  +F +MR   +    ATF+V+  A     +  LG Q+HC+ 
Sbjct: 137 SWNSMLSCYLQNGFHRKSIEIFTKMRLLEIQHDYATFAVVLKACTGIEDYGLGLQVHCLA 196

Query: 359 MKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETL 418
           ++   +SD++    L+ MY+ C  +D+A+NIF  M  R+ V W++++ G+  +    E L
Sbjct: 197 IQMGFDSDVVTGTALVDMYSTCKKLDHAFNIFCEMPERNSVCWSAVIAGYVRNDRFTEGL 256

Query: 419 KVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYV--SMI 476
           K+++ ML+ G   +  TF     +C+       G +L        K   G ++ V  + +
Sbjct: 257 KLYKVMLDEGMGVSQATFASAFRSCAGLSAFELGTQLHAYAL---KTNFGYDNIVGTATL 313

Query: 477 NLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNA-----EIAEHAAKRLLEL 531
           ++  +  ++ +A +     P  P  +   AL+   G+   +      EI     K  L+ 
Sbjct: 314 DMYAKCDRMVDARKVFNTFP-NPTRQSHNALI--VGYARQDQVLEALEIFRSLQKSYLDF 370

Query: 532 DPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGL 564
           D ++    +  C+        ++ H L +  GL
Sbjct: 371 DEISLSGALTACSAIKGYLEGIQLHGLAVKCGL 403



 Score = 68.9 bits (167), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 66/274 (24%), Positives = 116/274 (42%), Gaps = 22/274 (8%)

Query: 329 PPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYN 388
           P    TFS +F        I+ G+Q H  +  T     + + NCL+  Y KC  ++ A+N
Sbjct: 35  PTKKLTFSHIFQKCSNLKAINPGKQAHAQITVTGFVPTVFVSNCLLQFYCKCLNLNYAFN 94

Query: 389 IFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGL 448
           +F  M  RD++SWN+M+ G++  G       +F+SM E     + V++  +LS     G 
Sbjct: 95  VFDKMPQRDVISWNTMIFGYAGVGNMEFAQFLFDSMPER----DVVSWNSMLSCYLQNGF 150

Query: 449 VSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIK------EAEEFVLRLPFEPDHR 502
             +  E+F  M  + +IQ     Y +   +L     I+      +     +++ F+ D  
Sbjct: 151 HRKSIEIFTKM-RLLEIQ---HDYATFAVVLKACTGIEDYGLGLQVHCLAIQMGFDSDVV 206

Query: 503 IWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEE---HKLR 559
              AL+     C+      +HA     E+   N+     +   Y  + R  E    +K+ 
Sbjct: 207 TGTALVDMYSTCKK----LDHAFNIFCEMPERNSVCWSAVIAGYVRNDRFTEGLKLYKVM 262

Query: 560 MDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPA 593
           +D G+ GV +    S      G+  F  G ++ A
Sbjct: 263 LDEGM-GVSQATFASAFRSCAGLSAFELGTQLHA 295


>gi|449436591|ref|XP_004136076.1| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
           chloroplastic-like [Cucumis sativus]
          Length = 878

 Score =  295 bits (755), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 206/657 (31%), Positives = 315/657 (47%), Gaps = 92/657 (14%)

Query: 28  DEAKALFQLMPQRN----VVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGL 83
           DE   +++L+        V   NA+LS F++ G L +A  +F +M ER+V SW  ++ G 
Sbjct: 114 DEGSRVYELVSSSKSCLCVRLGNALLSMFVRFGNLLDAWYVFGKMSERDVFSWNVLVGGY 173

Query: 84  ADAGRVCEARKLFEEMP---------------------------------------ERNV 104
           A AG   EA  L+  M                                        E +V
Sbjct: 174 AKAGCFDEALNLYHRMLWAEIRPNVYTFPSVLKTCAGVSDIARGKEIHAHVIRFGFESDV 233

Query: 105 VSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEER 164
              N+++   ++ G+++ AR +F+ MP ++ ISWNAMI+GY E     E + LF  M E 
Sbjct: 234 DVGNALITMYVKCGDISNARMLFDKMPKRDRISWNAMISGYFENGGGLEGLELFSMMREL 293

Query: 165 NV----VTWT-----------------------------------SMISGYCRAGEVEEG 185
           +V    +T T                                   S+I  Y   G +EE 
Sbjct: 294 SVDPDLITMTTVASACELLDNERLGRGVHGYVVKSEFGGDISMNNSLIQMYSSLGRLEEA 353

Query: 186 YCLFRRMPRKNVVSWTAMIGGFAWNG--FHKESLLLFIEMKGIC-DNGNNCNVQSCNSMI 242
             +F RM  K+VVSWTAMI     +   F        +E++GI  D     +V S  + I
Sbjct: 354 ETVFSRMESKDVVSWTAMIASLVSHKLPFKAVETYKMMELEGILPDEITLVSVLSACACI 413

Query: 243 NGYIRFG-RLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWT 301
            G++  G RL E      T  V   I   S+ID Y     V NA  +F N+  ++ V+WT
Sbjct: 414 -GHLDLGIRLHEIA--IKTGLVSHVIVSNSLIDMYSKCKCVDNALEVFRNISGKNVVSWT 470

Query: 302 AMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKT 361
           ++I GL  N    EA   F +M+   + P + T   +  A      +  G++IH   ++T
Sbjct: 471 SLILGLRINNRSFEALLFFRQMK-ESMKPNSVTLISVLSACARIGALMRGKEIHAHALRT 529

Query: 362 ESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVF 421
               D  L N ++ MY +CG    A N F N   +D+ +WN ++ G++  G A   +++F
Sbjct: 530 GVGFDGFLPNAILDMYVRCGRKVPALNQF-NSQKKDVTAWNILLTGYAQQGQAKLAVELF 588

Query: 422 ESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGR 481
           + MLE   HP+ +TF+ +L ACS +G+V+ G E FN M + Y + P  +HY  ++++LGR
Sbjct: 589 DKMLELEIHPDEITFISLLCACSKSGMVTEGLEYFNIMKNKYNLTPNLKHYACVVDILGR 648

Query: 482 AGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVV 541
           AG++ +A +F+  +P  PD  IWGALL AC     N E+ E AAKR+ E D  +   +++
Sbjct: 649 AGQLDDAYDFIQDMPIRPDAAIWGALLNACRI-HRNVELGEIAAKRVFEKDNKSVGYYIL 707

Query: 542 LCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
           LCN+YA  G   +  K+R  M  +G+   PGCSW+   G +  FLSGD   +Q  EI
Sbjct: 708 LCNLYAGCGNWDKVSKVRSLMRERGLSADPGCSWVEIKGKVHAFLSGDNSHSQSKEI 764



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 115/441 (26%), Positives = 185/441 (41%), Gaps = 58/441 (13%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNV---- 73
           IT Y K G I  A+ LF  MP+R+ +S+NAM+SG+ +NG   E   LF  M E +V    
Sbjct: 240 ITMYVKCGDISNARMLFDKMPKRDRISWNAMISGYFENGGGLEGLELFSMMRELSVDPDL 299

Query: 74  --VSWTAMICGLADAGRVCEARKLFEEMPE--RNVVSWNSMVVGLIRNGELNEARKVFNS 129
             ++  A  C L D  R+      +    E   ++   NS++      G L EA  VF+ 
Sbjct: 300 ITMTTVASACELLDNERLGRGVHGYVVKSEFGGDISMNNSLIQMYSSLGRLEEAETVFSR 359

Query: 130 MPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEER------------------------- 164
           M  K+V+SW AMIA  V   +  +A+  ++ ME                           
Sbjct: 360 MESKDVVSWTAMIASLVSHKLPFKAVETYKMMELEGILPDEITLVSVLSACACIGHLDLG 419

Query: 165 --------------NVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWN 210
                         +V+   S+I  Y +   V+    +FR +  KNVVSWT++I G   N
Sbjct: 420 IRLHEIAIKTGLVSHVIVSNSLIDMYSKCKCVDNALEVFRNISGKNVVSWTSLILGLRIN 479

Query: 211 GFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNL----FDTVPVRDE 266
               E+LL F +MK         N  +  S+++   R G L   + +      T    D 
Sbjct: 480 NRSFEALLFFRQMK----ESMKPNSVTLISVLSACARIGALMRGKEIHAHALRTGVGFDG 535

Query: 267 ISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAH 326
               +++D Y+  G+   A   F N   +D  AW  +++G  Q      A  LF +M   
Sbjct: 536 FLPNAILDMYVRCGRKVPALNQF-NSQKKDVTAWNILLTGYAQQGQAKLAVELFDKMLEL 594

Query: 327 GVPPLNATFSVLFGAAGATANIDLGRQIHCVLM-KTESESDLILENCLISMYAKCGVIDN 385
            + P   TF  L  A   +  +  G +   ++  K     +L    C++ +  + G +D+
Sbjct: 595 EIHPDEITFISLLCACSKSGMVTEGLEYFNIMKNKYNLTPNLKHYACVVDILGRAGQLDD 654

Query: 386 AYNIFSNMVSR-DLVSWNSMV 405
           AY+   +M  R D   W +++
Sbjct: 655 AYDFIQDMPIRPDAAIWGALL 675



 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 55/199 (27%), Positives = 94/199 (47%), Gaps = 14/199 (7%)

Query: 9   SLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEM 68
           S V+   S I  YSK   +D A  +F+ +  +NVVS+ +++ G   N R  EA   F +M
Sbjct: 433 SHVIVSNSLIDMYSKCKCVDNALEVFRNISGKNVVSWTSLILGLRINNRSFEALLFFRQM 492

Query: 69  PER---NVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARK 125
            E    N V+  +++   A  G +   +++      R  V ++  +   I +  +   RK
Sbjct: 493 KESMKPNSVTLISVLSACARIGALMRGKEIHAH-ALRTGVGFDGFLPNAILDMYVRCGRK 551

Query: 126 V-----FNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNV----VTWTSMISGY 176
           V     FNS   K+V +WN ++ GY +      A+ LF++M E  +    +T+ S++   
Sbjct: 552 VPALNQFNSQK-KDVTAWNILLTGYAQQGQAKLAVELFDKMLELEIHPDEITFISLLCAC 610

Query: 177 CRAGEVEEGYCLFRRMPRK 195
            ++G V EG   F  M  K
Sbjct: 611 SKSGMVTEGLEYFNIMKNK 629


>gi|115446683|ref|NP_001047121.1| Os02g0555100 [Oryza sativa Japonica Group]
 gi|113536652|dbj|BAF09035.1| Os02g0555100 [Oryza sativa Japonica Group]
          Length = 596

 Score =  295 bits (754), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 179/519 (34%), Positives = 271/519 (52%), Gaps = 49/519 (9%)

Query: 96  FEEMPERNVVSWNSMVVGLIR-NGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEA 154
           F+++P +N  S+NS++  L R  G L +A ++ + MP  +                    
Sbjct: 87  FDDLPHKNAHSYNSLLAALARGRGTLPDALRLLDGMPPAS-------------------- 126

Query: 155 IVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKN--------VVSWTAMIGG 206
                    RNVV++ ++IS   R G   E   +F ++ R          +  +T +   
Sbjct: 127 ---------RNVVSYNTVISSLARHGRESEALRVFAQLARDRGLGQQQVAIDRFTVVSAA 177

Query: 207 FAWNGFHKESLLLFIEMKG-ICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRD 265
            A  G      L   E+ G +  +G    V   N+M++ Y + GR+E+A+ +FD + +RD
Sbjct: 178 SACAGLRDARHLR--ELHGAVVVSGMEVTVIMANAMVDAYSKAGRVEDARGVFDQMTIRD 235

Query: 266 EISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRA 325
            +SWTSMI GY     + +A  +F  MP +DA+AWTA+ISG  QN     A  LF  M  
Sbjct: 236 SVSWTSMIAGYCRASMLDDAVQVFDMMPAQDAIAWTALISGHEQNGEEEIALELFERMTG 295

Query: 326 HGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESD---LILENCLISMYAKCGV 382
            GV P         GA      +  G+++H  +++    SD   + + N LI MY+KCG 
Sbjct: 296 EGVVPTPFALVSCLGACAKVGLVARGKEVHGFILRRSIGSDPFNVFIHNALIDMYSKCGD 355

Query: 383 IDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSA 442
           +  A  +F  M+ RD++SWNSMV GFSH+G   ++L VFE ML+    P  VTFL +L+A
Sbjct: 356 MVAAMAVFDRMLERDIISWNSMVTGFSHNGQGKQSLAVFERMLKDEVQPTYVTFLAVLTA 415

Query: 443 CSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFE---P 499
           CSHAGLVS G  +  +M D + ++P  EHY + I+ LGR  +++EA EF+  L  +    
Sbjct: 416 CSHAGLVSDGRRILESMQD-HGVEPRAEHYAAFIDALGRNRQLEEASEFIKGLSSKIGLG 474

Query: 500 DHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLR 559
               WGALLGAC    GN EIAE  A+ L +L+P N+  +V+L NIY+A+G+  +  ++R
Sbjct: 475 TTGSWGALLGAC-HVHGNIEIAEEVAEALFQLEPENSGRYVMLSNIYSAAGQWDDARQVR 533

Query: 560 MDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
             M  KG+RK    SW+       MF++ D    +  EI
Sbjct: 534 ALMKGKGLRKDQAYSWIEVQRAKHMFVADDTSHHEANEI 572



 Score =  139 bits (350), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 102/346 (29%), Positives = 166/346 (47%), Gaps = 28/346 (8%)

Query: 24  RGFIDEAKALFQLMP--QRNVVSYNAMLSGFLQNGRLSEARRLFEEMPER---------- 71
           RG + +A  L   MP   RNVVSYN ++S   ++GR SEA R+F ++             
Sbjct: 109 RGTLPDALRLLDGMPPASRNVVSYNTVISSLARHGRESEALRVFAQLARDRGLGQQQVAI 168

Query: 72  ---NVVSWTAMICGLADAGRVCEAR-KLFEEMPERNVVSWNSMVVGLIRNGELNEARKVF 127
               VVS  +   GL DA  + E    +     E  V+  N+MV    + G + +AR VF
Sbjct: 169 DRFTVVSAASACAGLRDARHLRELHGAVVVSGMEVTVIMANAMVDAYSKAGRVEDARGVF 228

Query: 128 NSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYC 187
           + M I++ +SW +MIAGY    M+ +A+ +F+ M  ++ + WT++ISG+ + GE E    
Sbjct: 229 DQMTIRDSVSWTSMIAGYCRASMLDDAVQVFDMMPAQDAIAWTALISGHEQNGEEEIALE 288

Query: 188 LFRRMPRKNVV----SWTAMIGGFAWNGF--HKESLLLFIEMKGICDNGNNCNVQSCNSM 241
           LF RM  + VV    +  + +G  A  G     + +  FI  + I  +  N  +   N++
Sbjct: 289 LFERMTGEGVVPTPFALVSCLGACAKVGLVARGKEVHGFILRRSIGSDPFNVFIH--NAL 346

Query: 242 INGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDA---- 297
           I+ Y + G +  A  +FD +  RD ISW SM+ G+   GQ   +  +F  M   +     
Sbjct: 347 IDMYSKCGDMVAAMAVFDRMLERDIISWNSMVTGFSHNGQGKQSLAVFERMLKDEVQPTY 406

Query: 298 VAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAG 343
           V + A+++      L  +   +   M+ HGV P    ++    A G
Sbjct: 407 VTFLAVLTACSHAGLVSDGRRILESMQDHGVEPRAEHYAAFIDALG 452



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 72/264 (27%), Positives = 131/264 (49%), Gaps = 20/264 (7%)

Query: 11  VVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPE 70
           V+   + +  YSK G +++A+ +F  M  R+ VS+ +M++G+ +   L +A ++F+ MP 
Sbjct: 205 VIMANAMVDAYSKAGRVEDARGVFDQMTIRDSVSWTSMIAGYCRASMLDDAVQVFDMMPA 264

Query: 71  RNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMV---------VGLIRNGELN 121
           ++ ++WTA+I G    G    A +LFE M    VV     +         VGL+  G+  
Sbjct: 265 QDAIAWTALISGHEQNGEEEIALELFERMTGEGVVPTPFALVSCLGACAKVGLVARGKEV 324

Query: 122 EA---RKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCR 178
                R+   S P  NV   NA+I  Y +C  M  A+ +F+ M ER++++W SM++G+  
Sbjct: 325 HGFILRRSIGSDPF-NVFIHNALIDMYSKCGDMVAAMAVFDRMLERDIISWNSMVTGFSH 383

Query: 179 AGEVEEGYCLFRRMPRKNV----VSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCN 234
            G+ ++   +F RM +  V    V++ A++   +  G   +   +   M+   D+G    
Sbjct: 384 NGQGKQSLAVFERMLKDEVQPTYVTFLAVLTACSHAGLVSDGRRILESMQ---DHGVEPR 440

Query: 235 VQSCNSMINGYIRFGRLEEAQNLF 258
            +   + I+   R  +LEEA    
Sbjct: 441 AEHYAAFIDALGRNRQLEEASEFI 464


>gi|242041125|ref|XP_002467957.1| hypothetical protein SORBIDRAFT_01g037150 [Sorghum bicolor]
 gi|241921811|gb|EER94955.1| hypothetical protein SORBIDRAFT_01g037150 [Sorghum bicolor]
          Length = 650

 Score =  295 bits (754), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 187/582 (32%), Positives = 293/582 (50%), Gaps = 44/582 (7%)

Query: 33  LFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPER-NVVSWTAMICGLADAGRVCE 91
           LF+L+   N  + N ++   L+ G       L+  MP   +  +   +    A  G   E
Sbjct: 65  LFRLVRSPNAFTCNTLIRAALRQGLPHLCFPLYASMPAAPDTYTHPLLAAACAARGDARE 124

Query: 92  ARKLFEEMPER----NVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVE 147
            R++     +     N+   N+++      G +  AR+VF++ P+ + +SWN ++A YV 
Sbjct: 125 GRQVHSHAVKHGFGDNLYLRNALMHMYSACGCVAGARRVFDAGPVWDAVSWNTILATYVR 184

Query: 148 CCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGF 207
              + +A+ +F  M ER+    +SM++ + R G VEE   +F     ++  +WTAMI  F
Sbjct: 185 DGDVEQAVGVFARMPERSAAAVSSMVALFARTGMVEEARGVFDGAEHRDAFTWTAMISCF 244

Query: 208 AWNGFHKESLLLFIEMKG---------------------ICDNGNNC------------- 233
             N    E+L +F +M+                      +  NG  C             
Sbjct: 245 ERNDLFVEALAVFSDMREEGWPVDEAVMVSVVAACAKSEVIQNGEVCHGLVVRAGLGSRV 304

Query: 234 NVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMP 293
           NVQ  N++I+ Y     +  A+ LFD+    D  SW SMI GYL  G+V +A  LF+ MP
Sbjct: 305 NVQ--NALIHMYSSCLDVVAARRLFDSSESLDHFSWNSMISGYLKNGRVEDAKALFNVMP 362

Query: 294 DRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQ 353
           D+D V+W+AMI+G VQN    EA  +F  MRAH + P   T   +  A      ++ G+ 
Sbjct: 363 DKDNVSWSAMIAGCVQNNQSSEALTVFDNMRAHEIKPDEVTLVSVISACTNLCALEQGKL 422

Query: 354 IHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGL 413
           +H  + + +    ++L   LI MY KCG ++ A  +F  +  +    WN++++G + +GL
Sbjct: 423 VHEYIRQYQYNITIVLGTSLIDMYMKCGCMEAALEVFDMVEEKGTPCWNAVIVGLAMNGL 482

Query: 414 ANETLKVFESMLESGTH-PNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHY 472
              +L +F  M  SG   P+ +TF G+LSAC H GLV  G + F  M + Y+I P   HY
Sbjct: 483 VTRSLDMFSEMETSGIAVPSEITFTGVLSACRHGGLVEEGRQFFKLMQNKYQIIPNIRHY 542

Query: 473 VSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELD 532
             M++LLGRAG ++EAE+ +  +P  PD   WGALLGAC +   ++E+ E   K+L++LD
Sbjct: 543 GCMVDLLGRAGYVREAEDLIQSMPMSPDVPAWGALLGAC-WKHSDSEVGERVGKKLVKLD 601

Query: 533 PLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCS 574
           P +     +L NIYA+ G       LR  M  + V KV GCS
Sbjct: 602 PHHDGFQTMLSNIYASEGMWQCVKDLRGSMK-QHVAKVAGCS 642



 Score =  145 bits (367), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 114/440 (25%), Positives = 195/440 (44%), Gaps = 67/440 (15%)

Query: 21  YSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMI 80
           YS  G +  A+ +F   P  + VS+N +L+ ++++G + +A  +F  MPER+  + ++M+
Sbjct: 151 YSACGCVAGARRVFDAGPVWDAVSWNTILATYVRDGDVEQAVGVFARMPERSAAAVSSMV 210

Query: 81  CGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSM-----PIKNV 135
              A  G V EAR +F+    R+  +W +M+    RN    EA  VF+ M     P+   
Sbjct: 211 ALFARTGMVEEARGVFDGAEHRDAFTWTAMISCFERNDLFVEALAVFSDMREEGWPVDEA 270

Query: 136 I----------------------------------SWNAMIAGYVECCMMGEAIVLFEEM 161
           +                                    NA+I  Y  C  +  A  LF+  
Sbjct: 271 VMVSVVAACAKSEVIQNGEVCHGLVVRAGLGSRVNVQNALIHMYSSCLDVVAARRLFDSS 330

Query: 162 EERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFI 221
           E  +  +W SMISGY + G VE+   LF  MP K+ VSW+AMI G   N    E+L +F 
Sbjct: 331 ESLDHFSWNSMISGYLKNGRVEDAKALFNVMPDKDNVSWSAMIAGCVQNNQSSEALTVFD 390

Query: 222 EMKG-------------ICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEIS 268
            M+              I    N C ++    +++ YIR       Q  ++   V     
Sbjct: 391 NMRAHEIKPDEVTLVSVISACTNLCALEQ-GKLVHEYIR-------QYQYNITIVLG--- 439

Query: 269 WTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGV 328
            TS+ID Y+  G +  A  +F  + ++    W A+I GL  N L   +  +F EM   G+
Sbjct: 440 -TSLIDMYMKCGCMEAALEVFDMVEEKGTPCWNAVIVGLAMNGLVTRSLDMFSEMETSGI 498

Query: 329 P-PLNATFSVLFGAAGATANIDLGRQIHCVLM-KTESESDLILENCLISMYAKCGVIDNA 386
             P   TF+ +  A      ++ GRQ   ++  K +   ++    C++ +  + G +  A
Sbjct: 499 AVPSEITFTGVLSACRHGGLVEEGRQFFKLMQNKYQIIPNIRHYGCMVDLLGRAGYVREA 558

Query: 387 YNIFSNM-VSRDLVSWNSMV 405
            ++  +M +S D+ +W +++
Sbjct: 559 EDLIQSMPMSPDVPAWGALL 578



 Score =  102 bits (253), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 93/383 (24%), Positives = 153/383 (39%), Gaps = 88/383 (22%)

Query: 7   PKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFE 66
           P+     ++S +  +++ G ++EA+ +F     R+  ++ AM+S F +N    EA  +F 
Sbjct: 199 PERSAAAVSSMVALFARTGMVEEARGVFDGAEHRDAFTWTAMISCFERNDLFVEALAVFS 258

Query: 67  EMPERN------VVSWTAMICGLADA---GRVCE-------------------------- 91
           +M E        V+      C  ++    G VC                           
Sbjct: 259 DMREEGWPVDEAVMVSVVAACAKSEVIQNGEVCHGLVVRAGLGSRVNVQNALIHMYSSCL 318

Query: 92  ----ARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVE 147
               AR+LF+     +  SWNSM+ G ++NG + +A+ +FN MP K+ +SW+AMIAG V+
Sbjct: 319 DVVAARRLFDSSESLDHFSWNSMISGYLKNGRVEDAKALFNVMPDKDNVSWSAMIAGCVQ 378

Query: 148 CCMMGEAIVLFEEMEER---------------------------------------NVVT 168
                EA+ +F+ M                                           +V 
Sbjct: 379 NNQSSEALTVFDNMRAHEIKPDEVTLVSVISACTNLCALEQGKLVHEYIRQYQYNITIVL 438

Query: 169 WTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICD 228
            TS+I  Y + G +E    +F  +  K    W A+I G A NG    SL +F EM+    
Sbjct: 439 GTSLIDMYMKCGCMEAALEVFDMVEEKGTPCWNAVIVGLAMNGLVTRSLDMFSEME---T 495

Query: 229 NGNNCNVQSCNSMINGYIRFGRL-EEAQNLFDTVPVRDEI-----SWTSMIDGYLSVGQV 282
           +G     +   + +    R G L EE +  F  +  + +I      +  M+D     G V
Sbjct: 496 SGIAVPSEITFTGVLSACRHGGLVEEGRQFFKLMQNKYQIIPNIRHYGCMVDLLGRAGYV 555

Query: 283 SNAYYLFHNMP-DRDAVAWTAMI 304
             A  L  +MP   D  AW A++
Sbjct: 556 REAEDLIQSMPMSPDVPAWGALL 578


>gi|224094835|ref|XP_002310258.1| predicted protein [Populus trichocarpa]
 gi|222853161|gb|EEE90708.1| predicted protein [Populus trichocarpa]
          Length = 666

 Score =  295 bits (754), Expect = 6e-77,   Method: Compositional matrix adjust.
 Identities = 180/563 (31%), Positives = 294/563 (52%), Gaps = 59/563 (10%)

Query: 46  NAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNV- 104
           +A++  +++ G++ E   +F+EMP RNVVSWTA+I GL  AG   EA   F +M  + V 
Sbjct: 107 SALVDMYMKIGKVDEGCIVFKEMPLRNVVSWTAIIAGLVRAGYNKEALAYFSDMWIQKVG 166

Query: 105 ---VSWNSMVVGLIRNGELNEARKVFNSMPIK--NVISW--NAMIAGYVECCMMGEAIVL 157
               +++S +     +G LN  R++      K    +S+  N +   Y +C  +   + L
Sbjct: 167 CDTYTFSSALKACADSGALNYGREIHCQTLKKGFTAVSFVANTLATMYNKCGKLDYGLRL 226

Query: 158 FEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKN----------VVSWTAMIGGF 207
           FE M +R+VV+WT++I    + G+ E     FRRM   +          V+S  A +G  
Sbjct: 227 FESMTQRDVVSWTTIIMSNVQIGQEENAVKAFRRMRETDVSPNEFTFAAVISGCATLGRI 286

Query: 208 AWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEI 267
            W     E L   +  +G+ D     ++   NS++  Y +  +L+ A  +F  +  RD I
Sbjct: 287 EWG----EQLHAHVIRRGLVD-----SLSVANSIMAMYSKCWQLDLASTVFQGLSRRDII 337

Query: 268 SWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHG 327
           SW++MI GY   G    A+         D ++W                      MR  G
Sbjct: 338 SWSTMISGYAQGGCGEEAF---------DYLSW----------------------MRREG 366

Query: 328 VPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAY 387
             P    F+ +    G  A ++ G+Q+H  ++    E + ++++ LI+MY+KCG I  A 
Sbjct: 367 PRPNEFAFASVLSVCGNMAILEQGKQLHAHVLCVGLEQNTMVQSALINMYSKCGSIKEAS 426

Query: 388 NIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAG 447
            IF      ++VSW +M+ G++ HG + E + +F+ + + G  P+SVTF+ +L+ACSHAG
Sbjct: 427 KIFDEAEYNNIVSWTAMINGYAEHGYSQEAIDLFKKLPKVGLRPDSVTFIAVLAACSHAG 486

Query: 448 LVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGAL 507
           LV  G+  FN++  V++I P  +HY  MI+LL RAG++ +AE  +  +PF+ D  +W  L
Sbjct: 487 LVDLGFHYFNSLSKVHQICPSKDHYGCMIDLLCRAGRLNDAESMIQSMPFQRDDVVWSTL 546

Query: 508 LGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGV 567
           L AC    G+ +  + AA+++L+LDP  A  H+ L N+YAA G+  E  ++R  M  KGV
Sbjct: 547 LRACRI-HGDVDCGKRAAEKILQLDPNCAVTHITLANMYAAKGKWKEAAEVRKMMKSKGV 605

Query: 568 RKVPGCSWLMRNGGIQMFLSGDK 590
            K PG SW+     +  F+SGD+
Sbjct: 606 VKEPGWSWIKFKDRVSAFVSGDR 628



 Score =  139 bits (349), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 91/317 (28%), Positives = 150/317 (47%), Gaps = 29/317 (9%)

Query: 139 NAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVV 198
           N ++   V+   +  A  LF++M +R+ ++WT++ISGY       E   LF +M      
Sbjct: 5   NLVLKNLVKTGHLNNARQLFDKMLQRDEISWTTIISGYVNGMNTTEALSLFSKM------ 58

Query: 199 SWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLF 258
            W          G H +  +L + +K     G N +V S    ++GY          +  
Sbjct: 59  -WVE-------PGLHMDPFILSLALKAC---GLNMSV-SFGESLHGY------SVKTDFV 100

Query: 259 DTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATY 318
           ++V V      ++++D Y+ +G+V     +F  MP R+ V+WTA+I+GLV+     EA  
Sbjct: 101 NSVFVG-----SALVDMYMKIGKVDEGCIVFKEMPLRNVVSWTAIIAGLVRAGYNKEALA 155

Query: 319 LFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYA 378
            F +M    V     TFS    A   +  ++ GR+IHC  +K    +   + N L +MY 
Sbjct: 156 YFSDMWIQKVGCDTYTFSSALKACADSGALNYGREIHCQTLKKGFTAVSFVANTLATMYN 215

Query: 379 KCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLG 438
           KCG +D    +F +M  RD+VSW +++M     G     +K F  M E+   PN  TF  
Sbjct: 216 KCGKLDYGLRLFESMTQRDVVSWTTIIMSNVQIGQEENAVKAFRRMRETDVSPNEFTFAA 275

Query: 439 ILSACSHAGLVSRGWEL 455
           ++S C+  G +  G +L
Sbjct: 276 VISGCATLGRIEWGEQL 292



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 115/502 (22%), Positives = 200/502 (39%), Gaps = 136/502 (27%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNV---- 73
           +  Y K G +DE   +F+ MP RNVVS+ A+++G ++ G   EA   F +M  + V    
Sbjct: 110 VDMYMKIGKVDEGCIVFKEMPLRNVVSWTAIIAGLVRAGYNKEALAYFSDMWIQKVGCDT 169

Query: 74  VSWTAMICGLADAGRVCEAR-----------------------------------KLFEE 98
            ++++ +   AD+G +   R                                   +LFE 
Sbjct: 170 YTFSSALKACADSGALNYGREIHCQTLKKGFTAVSFVANTLATMYNKCGKLDYGLRLFES 229

Query: 99  MPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNV-------------------ISW- 138
           M +R+VVSW ++++  ++ G+   A K F  M   +V                   I W 
Sbjct: 230 MTQRDVVSWTTIIMSNVQIGQEENAVKAFRRMRETDVSPNEFTFAAVISGCATLGRIEWG 289

Query: 139 -------------------NAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRA 179
                              N+++A Y +C  +  A  +F+ +  R++++W++MISGY + 
Sbjct: 290 EQLHAHVIRRGLVDSLSVANSIMAMYSKCWQLDLASTVFQGLSRRDIISWSTMISGYAQG 349

Query: 180 GEVEEGYCLF----RRMPRKNVVSWTAMI---GGFAW----NGFHKESLLLFIEMKGICD 228
           G  EE +       R  PR N  ++ +++   G  A        H   L + +E      
Sbjct: 350 GCGEEAFDYLSWMRREGPRPNEFAFASVLSVCGNMAILEQGKQLHAHVLCVGLE------ 403

Query: 229 NGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYL 288
              N  VQS  ++IN Y + G ++EA  +FD     + +SWT+MI+GY   G    A  L
Sbjct: 404 --QNTMVQS--ALINMYSKCGSIKEASKIFDEAEYNNIVSWTAMINGYAEHGYSQEAIDL 459

Query: 289 FHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANI 348
           F  +P                                 G+ P + TF  +  A      +
Sbjct: 460 FKKLPKV-------------------------------GLRPDSVTFIAVLAACSHAGLV 488

Query: 349 DLGRQIHCVLMKTES---ESDLILENCLISMYAKCGVIDNAYNIFSNM-VSRDLVSWNSM 404
           DLG      L K        D     C+I +  + G +++A ++  +M   RD V W+++
Sbjct: 489 DLGFHYFNSLSKVHQICPSKDHY--GCMIDLLCRAGRLNDAESMIQSMPFQRDDVVWSTL 546

Query: 405 VMGFSHHGLANETLKVFESMLE 426
           +     HG  +   +  E +L+
Sbjct: 547 LRACRIHGDVDCGKRAAEKILQ 568



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 66/272 (24%), Positives = 130/272 (47%), Gaps = 48/272 (17%)

Query: 16  SSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLF----EEMPER 71
           S +  YSK   +D A  +FQ + +R+++S++ M+SG+ Q G   EA         E P  
Sbjct: 310 SIMAMYSKCWQLDLASTVFQGLSRRDIISWSTMISGYAQGGCGEEAFDYLSWMRREGPRP 369

Query: 72  NVVSWTAM--ICG---LADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKV 126
           N  ++ ++  +CG   + + G+   A  L   + E+N +  ++++    + G + EA K+
Sbjct: 370 NEFAFASVLSVCGNMAILEQGKQLHAHVLCVGL-EQNTMVQSALINMYSKCGSIKEASKI 428

Query: 127 FNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEE----RNVVTWTSMISGYCRAGEV 182
           F+     N++SW AMI GY E     EAI LF+++ +     + VT+ ++++    AG V
Sbjct: 429 FDEAEYNNIVSWTAMINGYAEHGYSQEAIDLFKKLPKVGLRPDSVTFIAVLAACSHAGLV 488

Query: 183 EEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMI 242
           + G+  F  + +                            +  IC + ++        MI
Sbjct: 489 DLGFHYFNSLSK----------------------------VHQICPSKDHYGC-----MI 515

Query: 243 NGYIRFGRLEEAQNLFDTVPV-RDEISWTSMI 273
           +   R GRL +A+++  ++P  RD++ W++++
Sbjct: 516 DLLCRAGRLNDAESMIQSMPFQRDDVVWSTLL 547



 Score = 65.5 bits (158), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 57/219 (26%), Positives = 105/219 (47%), Gaps = 22/219 (10%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPE----RNV 73
           I  YSK G I EA  +F      N+VS+ AM++G+ ++G   EA  LF+++P+     + 
Sbjct: 413 INMYSKCGSIKEASKIFDEAEYNNIVSWTAMINGYAEHGYSQEAIDLFKKLPKVGLRPDS 472

Query: 74  VSWTAMICGLADAGRVCEARKLFEEMPERNVV-----SWNSMVVGLIRNGELNEARKVFN 128
           V++ A++   + AG V      F  + + + +      +  M+  L R G LN+A  +  
Sbjct: 473 VTFIAVLAACSHAGLVDLGFHYFNSLSKVHQICPSKDHYGCMIDLLCRAGRLNDAESMIQ 532

Query: 129 SMPI-KNVISWNAM-----IAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEV 182
           SMP  ++ + W+ +     I G V+C       +L  +++    VT  ++ + Y   G+ 
Sbjct: 533 SMPFQRDDVVWSTLLRACRIHGDVDCGKRAAEKIL--QLDPNCAVTHITLANMYAAKGKW 590

Query: 183 EEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFI 221
           +E   + + M  K VV       G++W  F K+ +  F+
Sbjct: 591 KEAAEVRKMMKSKGVVKEP----GWSWIKF-KDRVSAFV 624


>gi|222635245|gb|EEE65377.1| hypothetical protein OsJ_20684 [Oryza sativa Japonica Group]
          Length = 769

 Score =  295 bits (754), Expect = 6e-77,   Method: Compositional matrix adjust.
 Identities = 168/521 (32%), Positives = 271/521 (52%), Gaps = 60/521 (11%)

Query: 99  MPERNVVSWNSMVVGLIRNGELNEARKVFNSMPI-----KNVISWNAMIAGYVECCMMGE 153
           MP ++  S ++MV G  +NG L+EA ++           K V ++N +I  Y +     +
Sbjct: 1   MPAKDSASLSTMVSGFTKNGMLHEAEELLTKRLSVTDMDKAVDAYNTLIVAYGQAGRFSD 60

Query: 154 AIVLFEEME--------------ERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVS 199
           A  LF+ +               ERNVV+W SM+  Y +AG+V     LF  MP K++VS
Sbjct: 61  AKRLFDMIPKGQYQHNMLKRKGFERNVVSWNSMMICYIKAGDVCSARALFNEMPDKDLVS 120

Query: 200 WTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFD 259
           W                                      N+MI+GY +   ++E++ LF 
Sbjct: 121 W--------------------------------------NTMISGYTQASDMKESEKLFW 142

Query: 260 TVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYL 319
            +P  D +SW  +I G++  G+  +A   F  MP+R  ++W  MISG  +N  ++ +  L
Sbjct: 143 EMPDPDTVSWNLIIQGFMQKGEAEHARGFFDRMPERGTISWNTMISGYEKNGNYISSVKL 202

Query: 320 FMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAK 379
           F +M   G  P   TFS +  A  +   + LG QIH ++ K+    D  + N LI+MY++
Sbjct: 203 FSKMLEVGEIPDRHTFSSVLAACASIPMLGLGAQIHQLVEKS-FVPDTAISNALITMYSR 261

Query: 380 CGVIDNAYNIFSNM-VSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLG 438
           CG +++A  IF  M   +DLVSWN+++  + HHG A + L++F+ M  +   P  +TF+ 
Sbjct: 262 CGALNDAEAIFKQMHTKKDLVSWNALIGCYEHHGRATKALQLFKEMRRAKVMPTHITFVS 321

Query: 439 ILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFE 498
           +LSAC +AGLVS G  +F+ M   Y I    EHY +++NL+GR G++ +A E +  +P  
Sbjct: 322 LLSACVNAGLVSEGRMVFDTMVHEYGIVARIEHYAALVNLIGRHGQLDDALEVINSMPMA 381

Query: 499 PDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKL 558
           PD  +WGA LGAC   + N  +A+ AAK L  ++P ++  +V++ N++A  G+      +
Sbjct: 382 PDRSVWGAFLGACT-AKKNEPLAQMAAKELSTINPDSSAPYVLIHNLHAHEGKWGSAAVV 440

Query: 559 RMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEIL 599
           R +M  +G+ K PG SW+   G + +F+SGD       EI 
Sbjct: 441 REEMERQGIYKQPGYSWIDLEGKMHVFISGDTWHPNAQEIF 481



 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 124/434 (28%), Positives = 207/434 (47%), Gaps = 25/434 (5%)

Query: 37  MPQRNVVSYNAMLSGFLQNGRLSEA-----RRLFEEMPERNVVSWTAMICGLADAGRVCE 91
           MP ++  S + M+SGF +NG L EA     +RL     ++ V ++  +I     AGR  +
Sbjct: 1   MPAKDSASLSTMVSGFTKNGMLHEAEELLTKRLSVTDMDKAVDAYNTLIVAYGQAGRFSD 60

Query: 92  ARKLFEEMP--------------ERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVIS 137
           A++LF+ +P              ERNVVSWNSM++  I+ G++  AR +FN MP K+++S
Sbjct: 61  AKRLFDMIPKGQYQHNMLKRKGFERNVVSWNSMMICYIKAGDVCSARALFNEMPDKDLVS 120

Query: 138 WNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNV 197
           WN MI+GY +   M E+  LF EM + + V+W  +I G+ + GE E     F RMP +  
Sbjct: 121 WNTMISGYTQASDMKESEKLFWEMPDPDTVSWNLIIQGFMQKGEAEHARGFFDRMPERGT 180

Query: 198 VSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNL 257
           +SW  MI G+  NG +  S+ LF +M  + +  +     S  +        G   +   L
Sbjct: 181 ISWNTMISGYEKNGNYISSVKLFSKMLEVGEIPDRHTFSSVLAACASIPMLGLGAQIHQL 240

Query: 258 FDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNM-PDRDAVAWTAMISGLVQNELFVEA 316
            +   V D     ++I  Y   G +++A  +F  M   +D V+W A+I     +    +A
Sbjct: 241 VEKSFVPDTAISNALITMYSRCGALNDAEAIFKQMHTKKDLVSWNALIGCYEHHGRATKA 300

Query: 317 TYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILE-NCLIS 375
             LF EMR   V P + TF  L  A      +  GR +   ++        I     L++
Sbjct: 301 LQLFKEMRRAKVMPTHITFVSLLSACVNAGLVSEGRMVFDTMVHEYGIVARIEHYAALVN 360

Query: 376 MYAKCGVIDNAYNIFSNM-VSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPN-S 433
           +  + G +D+A  + ++M ++ D   W + +   +     NE L    +   S  +P+ S
Sbjct: 361 LIGRHGQLDDALEVINSMPMAPDRSVWGAFLGACT--AKKNEPLAQMAAKELSTINPDSS 418

Query: 434 VTFLGILSACSHAG 447
             ++ I +  +H G
Sbjct: 419 APYVLIHNLHAHEG 432



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 99/348 (28%), Positives = 169/348 (48%), Gaps = 66/348 (18%)

Query: 18  ITKYSKRGFIDEAKALFQLMP--------------QRNVVSYNAMLSGFLQNGRLSEARR 63
           I  Y + G   +AK LF ++P              +RNVVS+N+M+  +++ G +  AR 
Sbjct: 49  IVAYGQAGRFSDAKRLFDMIPKGQYQHNMLKRKGFERNVVSWNSMMICYIKAGDVCSARA 108

Query: 64  LFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEA 123
           LF EMP++++VSW  MI G   A  + E+ KLF EMP+ + VSWN ++ G ++ GE   A
Sbjct: 109 LFNEMPDKDLVSWNTMISGYTQASDMKESEKLFWEMPDPDTVSWNLIIQGFMQKGEAEHA 168

Query: 124 RKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEM---------------------- 161
           R  F+ MP +  ISWN MI+GY +      ++ LF +M                      
Sbjct: 169 RGFFDRMPERGTISWNTMISGYEKNGNYISSVKLFSKMLEVGEIPDRHTFSSVLAACASI 228

Query: 162 ------------EERNVVTWT----SMISGYCRAGEVEEGYCLFRRM-PRKNVVSWTAMI 204
                        E++ V  T    ++I+ Y R G + +   +F++M  +K++VSW A+I
Sbjct: 229 PMLGLGAQIHQLVEKSFVPDTAISNALITMYSRCGALNDAEAIFKQMHTKKDLVSWNALI 288

Query: 205 GGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVR 264
           G +  +G   ++L LF EM+       +    +  S+++  +  G + E + +FDT+   
Sbjct: 289 GCYEHHGRATKALQLFKEMRRAKVMPTHI---TFVSLLSACVNAGLVSEGRMVFDTMV-- 343

Query: 265 DEISWTSMIDGYLSV-------GQVSNAYYLFHNMP-DRDAVAWTAMI 304
            E    + I+ Y ++       GQ+ +A  + ++MP   D   W A +
Sbjct: 344 HEYGIVARIEHYAALVNLIGRHGQLDDALEVINSMPMAPDRSVWGAFL 391



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 70/272 (25%), Positives = 135/272 (49%), Gaps = 20/272 (7%)

Query: 7   PKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFE 66
           P   +V   + I+ Y++   + E++ LF  MP  + VS+N ++ GF+Q G    AR  F+
Sbjct: 114 PDKDLVSWNTMISGYTQASDMKESEKLFWEMPDPDTVSWNLIIQGFMQKGEAEHARGFFD 173

Query: 67  EMPERNVVSWTAMICGLADAGRVCEARKLFEEM------PERN----VVSWNSMVVGLIR 116
            MPER  +SW  MI G    G    + KLF +M      P+R+    V++  + +  L  
Sbjct: 174 RMPERGTISWNTMISGYEKNGNYISSVKLFSKMLEVGEIPDRHTFSSVLAACASIPMLGL 233

Query: 117 NGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEME-ERNVVTWTSMISG 175
             ++++   V  S      IS NA+I  Y  C  + +A  +F++M  ++++V+W ++I  
Sbjct: 234 GAQIHQL--VEKSFVPDTAIS-NALITMYSRCGALNDAEAIFKQMHTKKDLVSWNALIGC 290

Query: 176 YCRAGEVEEGYCLFRRMPRKNV----VSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGN 231
           Y   G   +   LF+ M R  V    +++ +++      G   E  ++F  M  + + G 
Sbjct: 291 YEHHGRATKALQLFKEMRRAKVMPTHITFVSLLSACVNAGLVSEGRMVFDTM--VHEYGI 348

Query: 232 NCNVQSCNSMINGYIRFGRLEEAQNLFDTVPV 263
              ++   +++N   R G+L++A  + +++P+
Sbjct: 349 VARIEHYAALVNLIGRHGQLDDALEVINSMPM 380


>gi|345505234|gb|AEN99841.1| chlororespiratory reduction 4, partial [Raphanus sativus]
          Length = 577

 Score =  295 bits (754), Expect = 6e-77,   Method: Compositional matrix adjust.
 Identities = 168/482 (34%), Positives = 256/482 (53%), Gaps = 46/482 (9%)

Query: 111 VVGL-IRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEM--EERNVV 167
           ++GL ++ G L  AR+VF+ MP ++ +S+N+MI GYV+C ++  A  LF+ M  E+RN++
Sbjct: 134 LIGLYLKCGCLGFARQVFDRMPQRDSVSYNSMIDGYVKCGLVESAGELFDLMPREKRNLI 193

Query: 168 TWTSMISGYC-RAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGI 226
           TW SMI GY  RA  V     LF  MP K+++SW                          
Sbjct: 194 TWNSMIGGYAQRADGVNVASKLFDEMPEKDLISW-------------------------- 227

Query: 227 CDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAY 286
                       NSMI GY++ GR+E+A+ LFD +P RD ++W  MIDGY  +G V  A 
Sbjct: 228 ------------NSMIGGYVKHGRIEDAKGLFDVMPRRDVVTWAIMIDGYGKLGLVHQAK 275

Query: 287 YLFHNMPDRDAVAWTAMISGLVQNELFVEATYLF--MEMRAHGVPPLNATFSVLFGAAGA 344
            LF  MP RD VA+ +M+SG VQN   +EA  +F  ME  +H + P   T  ++  A   
Sbjct: 276 TLFDQMPHRDVVAYNSMMSGFVQNRYHIEALEVFNHMEKESH-LSPDETTLVIVLSAIAQ 334

Query: 345 TANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSM 404
              +     +H  +++        L   LI MY+KCG I +A  +F  + S+ +  WN+M
Sbjct: 335 LGRLTKAIDMHLYIVEKRFLLSGKLGVALIDMYSKCGSIQHAMRVFEGIESKSIDHWNAM 394

Query: 405 VMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYK 464
           + G + HGL      +   +      P+ +TF+G+L+ACSH+GLV  G   F  M   +K
Sbjct: 395 IGGLAVHGLGESAFDMLLQIERRSIKPDHITFVGVLNACSHSGLVKEGLLCFELMRRKHK 454

Query: 465 IQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHA 524
           I+P  +HY  M+++L R+G I+ A+  +  +P EP+  IW   L AC       E  E  
Sbjct: 455 IEPRLQHYGCMVDILARSGSIELAKNLIEEMPIEPNDVIWRTFLNACSH-HKEFETGELV 513

Query: 525 AKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQM 584
           AK L+     N  ++V+L N+YA++G   +  ++R  M  K + K+PGCSW+  +G +  
Sbjct: 514 AKHLILQAGYNPSSYVLLSNMYASNGMWKDVRRVRTMMKEKKIEKLPGCSWIELDGRVHE 573

Query: 585 FL 586
           FL
Sbjct: 574 FL 575



 Score =  184 bits (468), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 128/430 (29%), Positives = 229/430 (53%), Gaps = 22/430 (5%)

Query: 25  GFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLA 84
           GF+ +++    L  Q      N ++  +L+ G L  AR++F+ MP+R+ VS+ +MI G  
Sbjct: 117 GFLIKSRTWSDLFLQ------NCLIGLYLKCGCLGFARQVFDRMPQRDSVSYNSMIDGYV 170

Query: 85  DAGRVCEARKLFEEMP--ERNVVSWNSMVVGLIRNGE-LNEARKVFNSMPIKNVISWNAM 141
             G V  A +LF+ MP  +RN+++WNSM+ G  +  + +N A K+F+ MP K++ISWN+M
Sbjct: 171 KCGLVESAGELFDLMPREKRNLITWNSMIGGYAQRADGVNVASKLFDEMPEKDLISWNSM 230

Query: 142 IAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWT 201
           I GYV+   + +A  LF+ M  R+VVTW  MI GY + G V +   LF +MP ++VV++ 
Sbjct: 231 IGGYVKHGRIEDAKGLFDVMPRRDVVTWAIMIDGYGKLGLVHQAKTLFDQMPHRDVVAYN 290

Query: 202 AMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNL-FDT 260
           +M+ GF  N +H E+L +F  M+   ++  + +  +   +++   + GRL +A ++    
Sbjct: 291 SMMSGFVQNRYHIEALEVFNHMEK--ESHLSPDETTLVIVLSAIAQLGRLTKAIDMHLYI 348

Query: 261 VPVRDEIS---WTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEAT 317
           V  R  +S     ++ID Y   G + +A  +F  +  +    W AMI GL  + L   A 
Sbjct: 349 VEKRFLLSGKLGVALIDMYSKCGSIQHAMRVFEGIESKSIDHWNAMIGGLAVHGLGESAF 408

Query: 318 YLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCV-LMKTESESDLILEN--CLI 374
            + +++    + P + TF  +  A   +  +  G  + C  LM+ + + +  L++  C++
Sbjct: 409 DMLLQIERRSIKPDHITFVGVLNACSHSGLVKEG--LLCFELMRRKHKIEPRLQHYGCMV 466

Query: 375 SMYAKCGVIDNAYNIFSNM-VSRDLVSWNSMVMGFSHHG-LANETLKVFESMLESGTHPN 432
            + A+ G I+ A N+   M +  + V W + +   SHH       L     +L++G +P+
Sbjct: 467 DILARSGSIELAKNLIEEMPIEPNDVIWRTFLNACSHHKEFETGELVAKHLILQAGYNPS 526

Query: 433 SVTFLGILSA 442
           S   L  + A
Sbjct: 527 SYVLLSNMYA 536



 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 81/306 (26%), Positives = 158/306 (51%), Gaps = 48/306 (15%)

Query: 16  SSITKYSKRGF-IDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVV 74
           S I  Y++R   ++ A  LF  MP+++++S+N+M+ G++++GR+ +A+ LF+ MP R+VV
Sbjct: 197 SMIGGYAQRADGVNVASKLFDEMPEKDLISWNSMIGGYVKHGRIEDAKGLFDVMPRRDVV 256

Query: 75  SWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKN 134
           +W  MI G    G V +A+ LF++MP R+VV++NSM+ G ++N    EA +VFN M  ++
Sbjct: 257 TWAIMIDGYGKLGLVHQAKTLFDQMPHRDVVAYNSMMSGFVQNRYHIEALEVFNHMEKES 316

Query: 135 VISWN----------------------------------------AMIAGYVECCMMGEA 154
            +S +                                        A+I  Y +C  +  A
Sbjct: 317 HLSPDETTLVIVLSAIAQLGRLTKAIDMHLYIVEKRFLLSGKLGVALIDMYSKCGSIQHA 376

Query: 155 IVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNV----VSWTAMIGGFAWN 210
           + +FE +E +++  W +MI G    G  E  + +  ++ R+++    +++  ++   + +
Sbjct: 377 MRVFEGIESKSIDHWNAMIGGLAVHGLGESAFDMLLQIERRSIKPDHITFVGVLNACSHS 436

Query: 211 GFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVR-DEISW 269
           G  KE LL F  M+    +     +Q    M++   R G +E A+NL + +P+  +++ W
Sbjct: 437 GLVKEGLLCFELMRR--KHKIEPRLQHYGCMVDILARSGSIELAKNLIEEMPIEPNDVIW 494

Query: 270 TSMIDG 275
            + ++ 
Sbjct: 495 RTFLNA 500


>gi|15241714|ref|NP_198751.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171567|sp|Q9FLZ9.1|PP405_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g39350
 gi|10177683|dbj|BAB11009.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332007040|gb|AED94423.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 677

 Score =  295 bits (754), Expect = 7e-77,   Method: Compositional matrix adjust.
 Identities = 200/621 (32%), Positives = 316/621 (50%), Gaps = 64/621 (10%)

Query: 13  HLTSSIT-KYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEM--- 68
           H+ S+++  Y+  G I  A+ LF+ MPQ +++SYN ++  +++ G   +A  +F  M   
Sbjct: 50  HILSTLSVTYALCGHITYARKLFEEMPQSSLLSYNIVIRMYVREGLYHDAISVFIRMVSE 109

Query: 69  -----PE-------------------------RNVVSW--------TAMICGLADAGRVC 90
                P+                         R + SW         A++    + G+V 
Sbjct: 110 GVKCVPDGYTYPFVAKAAGELKSMKLGLVVHGRILRSWFGRDKYVQNALLAMYMNFGKVE 169

Query: 91  EARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECC- 149
            AR +F+ M  R+V+SWN+M+ G  RNG +N+A  +F+ M  ++V   +A I   +  C 
Sbjct: 170 MARDVFDVMKNRDVISWNTMISGYYRNGYMNDALMMFDWMVNESVDLDHATIVSMLPVCG 229

Query: 150 -----MMGEAIVLFEEMEER---NVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWT 201
                 MG  +    E E+R    +    ++++ Y + G ++E   +F RM R++V++WT
Sbjct: 230 HLKDLEMGRNVHKLVE-EKRLGDKIEVKNALVNMYLKCGRMDEARFVFDRMERRDVITWT 288

Query: 202 AMIGGFAWNGFHKESLLL--FIEMKGICDNGNNCNVQSCNSMINGYIRF--GRLEEAQNL 257
            MI G+  +G  + +L L   ++ +G+    N   + S  S+    ++   G+      +
Sbjct: 289 CMINGYTEDGDVENALELCRLMQFEGV--RPNAVTIASLVSVCGDALKVNDGKCLHGWAV 346

Query: 258 FDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEAT 317
              V   D I  TS+I  Y    +V   + +F          W+A+I+G VQNEL  +A 
Sbjct: 347 RQQV-YSDIIIETSLISMYAKCKRVDLCFRVFSGASKYHTGPWSAIIAGCVQNELVSDAL 405

Query: 318 YLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMY 377
            LF  MR   V P  AT + L  A  A A++     IHC L KT   S L     L+ +Y
Sbjct: 406 GLFKRMRREDVEPNIATLNSLLPAYAALADLRQAMNIHCYLTKTGFMSSLDAATGLVHVY 465

Query: 378 AKCGVIDNAYNIFSNM----VSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNS 433
           +KCG +++A+ IF+ +     S+D+V W +++ G+  HG  +  L+VF  M+ SG  PN 
Sbjct: 466 SKCGTLESAHKIFNGIQEKHKSKDVVLWGALISGYGMHGDGHNALQVFMEMVRSGVTPNE 525

Query: 434 VTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVL 493
           +TF   L+ACSH+GLV  G  LF  M + YK      HY  +++LLGRAG++ EA   + 
Sbjct: 526 ITFTSALNACSHSGLVEEGLTLFRFMLEHYKTLARSNHYTCIVDLLGRAGRLDEAYNLIT 585

Query: 494 RLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHV 553
            +PFEP   +WGALL AC   E N ++ E AA +L EL+P N   +V+L NIYAA GR  
Sbjct: 586 TIPFEPTSTVWGALLAACVTHE-NVQLGEMAANKLFELEPENTGNYVLLANIYAALGRWK 644

Query: 554 EEHKLRMDMGLKGVRKVPGCS 574
           +  K+R  M   G+RK PG S
Sbjct: 645 DMEKVRSMMENVGLRKKPGHS 665



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 128/525 (24%), Positives = 228/525 (43%), Gaps = 90/525 (17%)

Query: 41  NVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVS---WTAMICGLADAGRVCEARKLFE 97
           +V  Y ++L+ F     +S+ + L   +     VS    + +    A  G +  ARKLFE
Sbjct: 14  SVKQYQSLLNHFAATQSISKTKALHCHVITGGRVSGHILSTLSVTYALCGHITYARKLFE 73

Query: 98  EMPERNVVSWNSMVVGLIRNGELNEARKVFNSM--------PIKNVISWNAMIAGYVECC 149
           EMP+ +++S+N ++   +R G  ++A  VF  M        P      + A  AG ++  
Sbjct: 74  EMPQSSLLSYNIVIRMYVREGLYHDAISVFIRMVSEGVKCVPDGYTYPFVAKAAGELKSM 133

Query: 150 MMGEAI--VLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGF 207
            +G  +   +      R+     ++++ Y   G+VE    +F  M  ++V+SW  MI G+
Sbjct: 134 KLGLVVHGRILRSWFGRDKYVQNALLAMYMNFGKVEMARDVFDVMKNRDVISWNTMISGY 193

Query: 208 AWNGFHKESLLLF---------------IEMKGICDN------GNNCN-----------V 235
             NG+  ++L++F               + M  +C +      G N +           +
Sbjct: 194 YRNGYMNDALMMFDWMVNESVDLDHATIVSMLPVCGHLKDLEMGRNVHKLVEEKRLGDKI 253

Query: 236 QSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDR 295
           +  N+++N Y++ GR++EA+ +FD +  RD I+WT MI+GY   G V NA  L       
Sbjct: 254 EVKNALVNMYLKCGRMDEARFVFDRMERRDVITWTCMINGYTEDGDVENALELCR----- 308

Query: 296 DAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIH 355
                      L+Q E               GV P   T + L    G    ++ G+ +H
Sbjct: 309 -----------LMQFE---------------GVRPNAVTIASLVSVCGDALKVNDGKCLH 342

Query: 356 CVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLAN 415
              ++ +  SD+I+E  LISMYAKC  +D  + +FS         W++++ G   + L +
Sbjct: 343 GWAVRQQVYSDIIIETSLISMYAKCKRVDLCFRVFSGASKYHTGPWSAIIAGCVQNELVS 402

Query: 416 ETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAM-FDVYKIQPG----PE 470
           + L +F+ M      PN  T   +L A  +A L     +L  AM    Y  + G     +
Sbjct: 403 DALGLFKRMRREDVEPNIATLNSLLPA--YAALA----DLRQAMNIHCYLTKTGFMSSLD 456

Query: 471 HYVSMINLLGRAGKIKEAEEF---VLRLPFEPDHRIWGALLGACG 512
               ++++  + G ++ A +    +       D  +WGAL+   G
Sbjct: 457 AATGLVHVYSKCGTLESAHKIFNGIQEKHKSKDVVLWGALISGYG 501



 Score = 63.9 bits (154), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 71/278 (25%), Positives = 123/278 (44%), Gaps = 55/278 (19%)

Query: 4   RNHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARR 63
           R    S ++  TS I+ Y+K   +D    +F    + +   ++A+++G +QN  +S+A  
Sbjct: 347 RQQVYSDIIIETSLISMYAKCKRVDLCFRVFSGASKYHTGPWSAIIAGCVQNELVSDALG 406

Query: 64  LFEEMP----ERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLI---- 115
           LF+ M     E N+ +  +++   A    + +A  +   + +   +S      GL+    
Sbjct: 407 LFKRMRREDVEPNIATLNSLLPAYAALADLRQAMNIHCYLTKTGFMSSLDAATGLVHVYS 466

Query: 116 RNGELNEARKVFNSM----PIKNVISWNAMIAGYVECCMMGE---AIVLFEEMEERNV-- 166
           + G L  A K+FN +      K+V+ W A+I+GY    M G+   A+ +F EM    V  
Sbjct: 467 KCGTLESAHKIFNGIQEKHKSKDVVLWGALISGY---GMHGDGHNALQVFMEMVRSGVTP 523

Query: 167 --VTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMK 224
             +T+TS ++    +G VEEG  LFR M                    H ++L       
Sbjct: 524 NEITFTSALNACSHSGLVEEGLTLFRFMLE------------------HYKTLA------ 559

Query: 225 GICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVP 262
                    N  +C  +++   R GRL+EA NL  T+P
Sbjct: 560 -------RSNHYTC--IVDLLGRAGRLDEAYNLITTIP 588


>gi|357465899|ref|XP_003603234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355492282|gb|AES73485.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 973

 Score =  294 bits (753), Expect = 7e-77,   Method: Compositional matrix adjust.
 Identities = 170/548 (31%), Positives = 288/548 (52%), Gaps = 28/548 (5%)

Query: 46  NAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVV 105
           N+ ++ +++ G ++ ARR+F +M E +++SW  +I G A +G         EE   R   
Sbjct: 336 NSAINMYVKAGSVNYARRMFGQMKEVDLISWNTVISGCARSG--------LEECSLR--- 384

Query: 106 SWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERN 165
               + + L+R+G L +   + + +   + +  +  +   V  C +   IVL       +
Sbjct: 385 ----LFIDLLRSGLLPDQFTITSVLRACSSLEESYCVGRQVHTCALKAGIVL-------D 433

Query: 166 VVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKG 225
               T++I  Y + G++EE   LF      ++ SW AM+ GF  +  ++E+L LF  M  
Sbjct: 434 SFVSTALIDVYSKGGKMEEAELLFHNQDGFDLASWNAMMHGFTVSDNYREALRLFSLMHE 493

Query: 226 ICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVR---DEISWTSMIDGYLSVGQV 282
             +  +     +        +R  + ++   +   + +R   D    + ++D YL  G++
Sbjct: 494 RGEKADQITFANAAKAAGCLVRLQQGKQIHAV--VIKMRFHYDLFVISGILDMYLKCGEM 551

Query: 283 SNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAA 342
            +A  +F+ +P  D VAWT +ISG V+N    +A + + +MR  GV P   TF+ L  A 
Sbjct: 552 KSARKVFNQIPSPDDVAWTTVISGCVENGEEEQALFTYHQMRLAGVQPDEYTFATLVKAC 611

Query: 343 GATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWN 402
                ++ G+QIH  +MK     D  +   L+ MYAKCG I++AY +F  M +R +  WN
Sbjct: 612 SLLTALEQGKQIHANIMKLNCAFDPFVMTSLVDMYAKCGNIEDAYGLFRRMNTRSVALWN 671

Query: 403 SMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDV 462
           +M++G + HG A E L  F  M   G  P+ VTF+G+LSACSH+GL S  ++ F++M   
Sbjct: 672 AMIVGLAQHGNAEEALNFFNEMKSRGVTPDRVTFIGVLSACSHSGLTSDAYKNFDSMQKT 731

Query: 463 YKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAE 522
           Y ++P  EHY  +++ L RAG I+EAE+ V  +PFE    ++  LL AC   +G+ E  E
Sbjct: 732 YGVEPEIEHYSCLVDALSRAGHIQEAEKVVSSMPFEASATMYRTLLNACR-VQGDKETGE 790

Query: 523 HAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGI 582
             A++L  +DP ++ A+V+L NIYAA+ +       R  M    V+K PG SW+     +
Sbjct: 791 RVAEKLFTMDPSDSAAYVLLSNIYAAANQWENAVSARNMMKRVNVKKEPGFSWIDMKNKV 850

Query: 583 QMFLSGDK 590
            +F++GD+
Sbjct: 851 HLFVAGDR 858



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 145/535 (27%), Positives = 244/535 (45%), Gaps = 49/535 (9%)

Query: 21  YSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPER----NVVSW 76
           Y+K   I EA+ LF  MP R+VV +N M+  +++ G   E   LF          + VS 
Sbjct: 167 YAKFQRIREARVLFDRMPVRDVVLWNVMMKAYVEMGAGDEVLGLFSAFHRSGLRPDCVSV 226

Query: 77  TAMICGLADAG---RVCE-----ARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFN 128
             ++ G+       R  E     A KLF    + +V  WN  +   ++ GE  EA   F 
Sbjct: 227 RTILMGVGKKTVFERELEQVRAYATKLFVCDDDSDVTVWNKTLSSYLQAGEGWEAVDCFR 286

Query: 129 SMPIKNVISWNAM-------IAGYVECCMMGE----AIVLFEEMEERNVVTWTSMISGYC 177
            M IK+ +  +++       +   +    +G+    A+V F    ++ V    S I+ Y 
Sbjct: 287 DM-IKSRVPCDSLTYIVILSVVASLNHLELGKQIHGAVVRFG--WDQFVSVANSAINMYV 343

Query: 178 RAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEM--KGICDNGNNCN- 234
           +AG V     +F +M   +++SW  +I G A +G  + SL LFI++   G+  +      
Sbjct: 344 KAGSVNYARRMFGQMKEVDLISWNTVISGCARSGLEECSLRLFIDLLRSGLLPDQFTITS 403

Query: 235 -VQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMP 293
            +++C+S+   Y   GR      L   + V D    T++ID Y   G++  A  LFHN  
Sbjct: 404 VLRACSSLEESYC-VGRQVHTCALKAGI-VLDSFVSTALIDVYSKGGKMEEAELLFHNQD 461

Query: 294 DRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQ 353
             D  +W AM+ G   ++ + EA  LF  M   G      TF+    AAG    +  G+Q
Sbjct: 462 GFDLASWNAMMHGFTVSDNYREALRLFSLMHERGEKADQITFANAAKAAGCLVRLQQGKQ 521

Query: 354 IHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGL 413
           IH V++K     DL + + ++ MY KCG + +A  +F+ + S D V+W +++ G   +G 
Sbjct: 522 IHAVVIKMRFHYDLFVISGILDMYLKCGEMKSARKVFNQIPSPDDVAWTTVISGCVENGE 581

Query: 414 ANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWEL------FNAMFDVYKIQP 467
             + L  +  M  +G  P+  TF  ++ ACS    + +G ++       N  FD      
Sbjct: 582 EEQALFTYHQMRLAGVQPDEYTFATLVKACSLLTALEQGKQIHANIMKLNCAFD------ 635

Query: 468 GPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCE-GNAEIA 521
            P    S++++  + G I++A     R+       +W A++   G  + GNAE A
Sbjct: 636 -PFVMTSLVDMYAKCGNIEDAYGLFRRMNTRS-VALWNAMI--VGLAQHGNAEEA 686



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 129/541 (23%), Positives = 234/541 (43%), Gaps = 73/541 (13%)

Query: 36  LMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPE--RNVVSWTAMICGLADAG------ 87
           L P R V   N +++ + + G L  AR+LF+  P+  R++V++ A++   A  G      
Sbjct: 44  LNPDRYVT--NNLITMYAKCGSLFSARKLFDITPQSDRDLVTYNAILAAYAHTGELHDVE 101

Query: 88  RVCEARKLFEEMPERNVVSWNSMVVGLIRNGELN---EARKVFNSMPIKNVISWNAMIAG 144
           +  EA  +F  + +  +++    +  L +   L     A +      +K  + W+  +AG
Sbjct: 102 KTHEAFHIFRLLRQSVMLTTRHTLSPLFKLCLLYGSPSASEALQGYAVKIGLQWDVFVAG 161

Query: 145 -----YVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLF----RRMPRK 195
                Y +   + EA VLF+ M  R+VV W  M+  Y   G  +E   LF    R   R 
Sbjct: 162 ALVNIYAKFQRIREARVLFDRMPVRDVVLWNVMMKAYVEMGAGDEVLGLFSAFHRSGLRP 221

Query: 196 NVVSWTAMIGGFAWNGFHK---ESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLE 252
           + VS   ++ G       +   E +  +     +CD+ ++  V   N  ++ Y++ G   
Sbjct: 222 DCVSVRTILMGVGKKTVFERELEQVRAYATKLFVCDDDSDVTVW--NKTLSSYLQAGEGW 279

Query: 253 EAQNLF-DTVPVR---DEISW-----------------------------------TSMI 273
           EA + F D +  R   D +++                                    S I
Sbjct: 280 EAVDCFRDMIKSRVPCDSLTYIVILSVVASLNHLELGKQIHGAVVRFGWDQFVSVANSAI 339

Query: 274 DGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNA 333
           + Y+  G V+ A  +F  M + D ++W  +ISG  ++ L   +  LF+++   G+ P   
Sbjct: 340 NMYVKAGSVNYARRMFGQMKEVDLISWNTVISGCARSGLEECSLRLFIDLLRSGLLPDQF 399

Query: 334 TF-SVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSN 392
           T  SVL   +    +  +GRQ+H   +K     D  +   LI +Y+K G ++ A  +F N
Sbjct: 400 TITSVLRACSSLEESYCVGRQVHTCALKAGIVLDSFVSTALIDVYSKGGKMEEAELLFHN 459

Query: 393 MVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRG 452
               DL SWN+M+ GF+      E L++F  M E G   + +TF    +A   AG + R 
Sbjct: 460 QDGFDLASWNAMMHGFTVSDNYREALRLFSLMHERGEKADQITF---ANAAKAAGCLVRL 516

Query: 453 WELFNAMFDVYKIQPGPEHYV--SMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGA 510
            +       V K++   + +V   ++++  + G++K A +   ++P  PD   W  ++  
Sbjct: 517 QQGKQIHAVVIKMRFHYDLFVISGILDMYLKCGEMKSARKVFNQIP-SPDDVAWTTVISG 575

Query: 511 C 511
           C
Sbjct: 576 C 576



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 102/432 (23%), Positives = 188/432 (43%), Gaps = 58/432 (13%)

Query: 16  SSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEE------MP 69
           S+I  Y K G ++ A+ +F  M + +++S+N ++SG  ++G    + RLF +      +P
Sbjct: 337 SAINMYVKAGSVNYARRMFGQMKEVDLISWNTVISGCARSGLEECSLRLFIDLLRSGLLP 396

Query: 70  ERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLI----RNGELNEARK 125
           ++  ++     C   +    C  R++     +  +V  + +   LI    + G++ EA  
Sbjct: 397 DQFTITSVLRACSSLEES-YCVGRQVHTCALKAGIVLDSFVSTALIDVYSKGGKMEEAEL 455

Query: 126 VFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEER----NVVTWTS---------- 171
           +F++    ++ SWNAM+ G+       EA+ LF  M ER    + +T+ +          
Sbjct: 456 LFHNQDGFDLASWNAMMHGFTVSDNYREALRLFSLMHERGEKADQITFANAAKAAGCLVR 515

Query: 172 ---------------------MISG----YCRAGEVEEGYCLFRRMPRKNVVSWTAMIGG 206
                                +ISG    Y + GE++    +F ++P  + V+WT +I G
Sbjct: 516 LQQGKQIHAVVIKMRFHYDLFVISGILDMYLKCGEMKSARKVFNQIPSPDDVAWTTVISG 575

Query: 207 FAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQ----NLFDTVP 262
              NG  +++L  + +M+     G   +  +  +++        LE+ +    N+     
Sbjct: 576 CVENGEEEQALFTYHQMRLA---GVQPDEYTFATLVKACSLLTALEQGKQIHANIMKLNC 632

Query: 263 VRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFME 322
             D    TS++D Y   G + +AY LF  M  R    W AMI GL Q+    EA   F E
Sbjct: 633 AFDPFVMTSLVDMYAKCGNIEDAYGLFRRMNTRSVALWNAMIVGLAQHGNAEEALNFFNE 692

Query: 323 MRAHGVPPLNATF-SVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCG 381
           M++ GV P   TF  VL   + +    D  +    +      E ++   +CL+   ++ G
Sbjct: 693 MKSRGVTPDRVTFIGVLSACSHSGLTSDAYKNFDSMQKTYGVEPEIEHYSCLVDALSRAG 752

Query: 382 VIDNAYNIFSNM 393
            I  A  + S+M
Sbjct: 753 HIQEAEKVVSSM 764



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 85/331 (25%), Positives = 144/331 (43%), Gaps = 55/331 (16%)

Query: 15  TSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPER--- 71
           T+ I  YSK G ++EA+ LF      ++ S+NAM+ GF  +    EA RLF  M ER   
Sbjct: 438 TALIDVYSKGGKMEEAELLFHNQDGFDLASWNAMMHGFTVSDNYREALRLFSLMHERGEK 497

Query: 72  -NVVSWTA-------------------------------MICGLAD----AGRVCEARKL 95
            + +++                                 +I G+ D     G +  ARK+
Sbjct: 498 ADQITFANAAKAAGCLVRLQQGKQIHAVVIKMRFHYDLFVISGILDMYLKCGEMKSARKV 557

Query: 96  FEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAI 155
           F ++P  + V+W +++ G + NGE  +A   ++ M +  V       A  V+ C +  A+
Sbjct: 558 FNQIPSPDDVAWTTVISGCVENGEEEQALFTYHQMRLAGVQPDEYTFATLVKACSLLTAL 617

Query: 156 VLFEEMEER--------NVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGF 207
              +++           +    TS++  Y + G +E+ Y LFRRM  ++V  W AMI G 
Sbjct: 618 EQGKQIHANIMKLNCAFDPFVMTSLVDMYAKCGNIEDAYGLFRRMNTRSVALWNAMIVGL 677

Query: 208 AWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFD----TVPV 263
           A +G  +E+L  F EMK     G   +  +   +++     G   +A   FD    T  V
Sbjct: 678 AQHGNAEEALNFFNEMKS---RGVTPDRVTFIGVLSACSHSGLTSDAYKNFDSMQKTYGV 734

Query: 264 RDEIS-WTSMIDGYLSVGQVSNAYYLFHNMP 293
             EI  ++ ++D     G +  A  +  +MP
Sbjct: 735 EPEIEHYSCLVDALSRAGHIQEAEKVVSSMP 765



 Score = 68.9 bits (167), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 43/129 (33%), Positives = 68/129 (52%), Gaps = 9/129 (6%)

Query: 14  LTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNV 73
           +TS +  Y+K G I++A  LF+ M  R+V  +NAM+ G  Q+G   EA   F EM  R V
Sbjct: 639 MTSLVDMYAKCGNIEDAYGLFRRMNTRSVALWNAMIVGLAQHGNAEEALNFFNEMKSRGV 698

Query: 74  ----VSWTAMICGLADAGRVCEARKLFEEMP-----ERNVVSWNSMVVGLIRNGELNEAR 124
               V++  ++   + +G   +A K F+ M      E  +  ++ +V  L R G + EA 
Sbjct: 699 TPDRVTFIGVLSACSHSGLTSDAYKNFDSMQKTYGVEPEIEHYSCLVDALSRAGHIQEAE 758

Query: 125 KVFNSMPIK 133
           KV +SMP +
Sbjct: 759 KVVSSMPFE 767



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 55/235 (23%), Positives = 93/235 (39%), Gaps = 27/235 (11%)

Query: 226 ICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPV--RDEISWTSMIDGYLSVGQVS 283
           I  +G N +    N++I  Y + G L  A+ LFD  P   RD +++ +++  Y   G++ 
Sbjct: 39  IVTSGLNPDRYVTNNLITMYAKCGSLFSARKLFDITPQSDRDLVTYNAILAAYAHTGELH 98

Query: 284 NAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAG 343
           +                          E   EA ++F  +R   +     T S LF    
Sbjct: 99  DV-------------------------EKTHEAFHIFRLLRQSVMLTTRHTLSPLFKLCL 133

Query: 344 ATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNS 403
              +      +    +K   + D+ +   L+++YAK   I  A  +F  M  RD+V WN 
Sbjct: 134 LYGSPSASEALQGYAVKIGLQWDVFVAGALVNIYAKFQRIREARVLFDRMPVRDVVLWNV 193

Query: 404 MVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNA 458
           M+  +   G  +E L +F +   SG  P+ V+   IL       +  R  E   A
Sbjct: 194 MMKAYVEMGAGDEVLGLFSAFHRSGLRPDCVSVRTILMGVGKKTVFERELEQVRA 248



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 48/188 (25%), Positives = 89/188 (47%), Gaps = 19/188 (10%)

Query: 335 FSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIF--SN 392
           FS+L  A  A +++ LG++ H V++ +    D  + N LI+MYAKCG + +A  +F  + 
Sbjct: 17  FSILRHAI-ADSDLILGKRTHAVIVTSGLNPDRYVTNNLITMYAKCGSLFSARKLFDITP 75

Query: 393 MVSRDLVSWNSMVMGFSHHG------LANETLKVFESMLESGTHPNSVTFLGILSACSHA 446
              RDLV++N+++  ++H G        +E   +F  + +S       T   +   C   
Sbjct: 76  QSDRDLVTYNAILAAYAHTGELHDVEKTHEAFHIFRLLRQSVMLTTRHTLSPLFKLCLLY 135

Query: 447 GLVSRGWELFNAMFDVYKIQPGPEHYV----SMINLLGRAGKIKEAEEFVLRLPFEPDHR 502
           G  S    L       Y ++ G +  V    +++N+  +  +I+EA     R+P   D  
Sbjct: 136 GSPSASEALQG-----YAVKIGLQWDVFVAGALVNIYAKFQRIREARVLFDRMPVR-DVV 189

Query: 503 IWGALLGA 510
           +W  ++ A
Sbjct: 190 LWNVMMKA 197


>gi|15221566|ref|NP_177059.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75333633|sp|Q9CAA8.1|PP108_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g68930
 gi|12323213|gb|AAG51585.1|AC011665_6 hypothetical protein [Arabidopsis thaliana]
 gi|332196743|gb|AEE34864.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 743

 Score =  294 bits (753), Expect = 7e-77,   Method: Compositional matrix adjust.
 Identities = 182/610 (29%), Positives = 300/610 (49%), Gaps = 49/610 (8%)

Query: 33  LFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEA 92
           + + +P      YN ++  +      + ARR+F+ +P+ N+ SW  ++   + AG + E 
Sbjct: 32  IIRALPYPETFLYNNIVHAYALMKSSTYARRVFDRIPQPNLFSWNNLLLAYSKAGLISEM 91

Query: 93  RKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSM--------------------PI 132
              FE++P+R+ V+WN ++ G   +G +  A K +N+M                      
Sbjct: 92  ESTFEKLPDRDGVTWNVLIEGYSLSGLVGAAVKAYNTMMRDFSANLTRVTLMTMLKLSSS 151

Query: 133 KNVISWNAMIAG--------------------YVECCMMGEAIVLFEEMEERNVVTWTSM 172
              +S    I G                    Y     + +A  +F  +++RN V + S+
Sbjct: 152 NGHVSLGKQIHGQVIKLGFESYLLVGSPLLYMYANVGCISDAKKVFYGLDDRNTVMYNSL 211

Query: 173 ISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNN 232
           + G    G +E+   LFR M  K+ VSW AMI G A NG  KE++  F EMK     G  
Sbjct: 212 MGGLLACGMIEDALQLFRGM-EKDSVSWAAMIKGLAQNGLAKEAIECFREMK---VQGLK 267

Query: 233 CNVQSCNSMINGYIRFGRLEEAQNLFDTV---PVRDEIS-WTSMIDGYLSVGQVSNAYYL 288
            +     S++      G + E + +   +     +D I   +++ID Y     +  A  +
Sbjct: 268 MDQYPFGSVLPACGGLGAINEGKQIHACIIRTNFQDHIYVGSALIDMYCKCKCLHYAKTV 327

Query: 289 FHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANI 348
           F  M  ++ V+WTAM+ G  Q     EA  +F++M+  G+ P + T      A    +++
Sbjct: 328 FDRMKQKNVVSWTAMVVGYGQTGRAEEAVKIFLDMQRSGIDPDHYTLGQAISACANVSSL 387

Query: 349 DLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGF 408
           + G Q H   + +     + + N L+++Y KCG ID++  +F+ M  RD VSW +MV  +
Sbjct: 388 EEGSQFHGKAITSGLIHYVTVSNSLVTLYGKCGDIDDSTRLFNEMNVRDAVSWTAMVSAY 447

Query: 409 SHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPG 468
           +  G A ET+++F+ M++ G  P+ VT  G++SACS AGLV +G   F  M   Y I P 
Sbjct: 448 AQFGRAVETIQLFDKMVQHGLKPDGVTLTGVISACSRAGLVEKGQRYFKLMTSEYGIVPS 507

Query: 469 PEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRL 528
             HY  MI+L  R+G+++EA  F+  +PF PD   W  LL AC   +GN EI + AA+ L
Sbjct: 508 IGHYSCMIDLFSRSGRLEEAMRFINGMPFPPDAIGWTTLLSACR-NKGNLEIGKWAAESL 566

Query: 529 LELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSG 588
           +ELDP +   + +L +IYA+ G+     +LR  M  K V+K PG SW+   G +  F + 
Sbjct: 567 IELDPHHPAGYTLLSSIYASKGKWDSVAQLRRGMREKNVKKEPGQSWIKWKGKLHSFSAD 626

Query: 589 DKIPAQVAEI 598
           D+    + +I
Sbjct: 627 DESSPYLDQI 636



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 118/509 (23%), Positives = 216/509 (42%), Gaps = 92/509 (18%)

Query: 21  YSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMP----------- 69
           YSK G I E ++ F+ +P R+ V++N ++ G+  +G +  A + +  M            
Sbjct: 82  YSKAGLISEMESTFEKLPDRDGVTWNVLIEGYSLSGLVGAAVKAYNTMMRDFSANLTRVT 141

Query: 70  -----------------------------ERNVVSWTAMICGLADAGRVCEARKLFEEMP 100
                                        E  ++  + ++   A+ G + +A+K+F  + 
Sbjct: 142 LMTMLKLSSSNGHVSLGKQIHGQVIKLGFESYLLVGSPLLYMYANVGCISDAKKVFYGLD 201

Query: 101 ERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEE 160
           +RN V +NS++ GL+  G + +A ++F  M  K+ +SW AMI G  +  +  EAI  F E
Sbjct: 202 DRNTVMYNSLMGGLLACGMIEDALQLFRGME-KDSVSWAAMIKGLAQNGLAKEAIECFRE 260

Query: 161 ME---------------------------------------ERNVVTWTSMISGYCRAGE 181
           M+                                       + ++   +++I  YC+   
Sbjct: 261 MKVQGLKMDQYPFGSVLPACGGLGAINEGKQIHACIIRTNFQDHIYVGSALIDMYCKCKC 320

Query: 182 VEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSM 241
           +     +F RM +KNVVSWTAM+ G+   G  +E++ +F++M+    +G + +  +    
Sbjct: 321 LHYAKTVFDRMKQKNVVSWTAMVVGYGQTGRAEEAVKIFLDMQ---RSGIDPDHYTLGQA 377

Query: 242 INGYIRFGRLEEAQNLFDTVPVRDEISWT----SMIDGYLSVGQVSNAYYLFHNMPDRDA 297
           I+       LEE             I +     S++  Y   G + ++  LF+ M  RDA
Sbjct: 378 ISACANVSSLEEGSQFHGKAITSGLIHYVTVSNSLVTLYGKCGDIDDSTRLFNEMNVRDA 437

Query: 298 VAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCV 357
           V+WTAM+S   Q    VE   LF +M  HG+ P   T + +  A      ++ G Q +  
Sbjct: 438 VSWTAMVSAYAQFGRAVETIQLFDKMVQHGLKPDGVTLTGVISACSRAGLVEKG-QRYFK 496

Query: 358 LMKTESE--SDLILENCLISMYAKCGVIDNAYNIFSNM-VSRDLVSWNSMVMGFSHHGLA 414
           LM +E      +   +C+I ++++ G ++ A    + M    D + W +++    + G  
Sbjct: 497 LMTSEYGIVPSIGHYSCMIDLFSRSGRLEEAMRFINGMPFPPDAIGWTTLLSACRNKGNL 556

Query: 415 NETLKVFESMLE-SGTHPNSVTFLGILSA 442
                  ES++E    HP   T L  + A
Sbjct: 557 EIGKWAAESLIELDPHHPAGYTLLSSIYA 585



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 76/282 (26%), Positives = 129/282 (45%), Gaps = 51/282 (18%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNV---- 73
           I  Y K   +  AK +F  M Q+NVVS+ AM+ G+ Q GR  EA ++F +M    +    
Sbjct: 312 IDMYCKCKCLHYAKTVFDRMKQKNVVSWTAMVVGYGQTGRAEEAVKIFLDMQRSGIDPDH 371

Query: 74  VSWTAMICGLADAGRVCEARKLFEEMPERNVVSW----NSMVVGLIRNGELNEARKVFNS 129
            +    I   A+   + E  +   +     ++ +    NS+V    + G+++++ ++FN 
Sbjct: 372 YTLGQAISACANVSSLEEGSQFHGKAITSGLIHYVTVSNSLVTLYGKCGDIDDSTRLFNE 431

Query: 130 MPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNV----VTWTSMISGYCRAGEVEEG 185
           M +++ +SW AM++ Y +     E I LF++M +  +    VT T +IS   RAG VE+G
Sbjct: 432 MNVRDAVSWTAMVSAYAQFGRAVETIQLFDKMVQHGLKPDGVTLTGVISACSRAGLVEKG 491

Query: 186 YCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGY 245
              F+ M  +  +     IG +                             SC  MI+ +
Sbjct: 492 QRYFKLMTSEYGI--VPSIGHY-----------------------------SC--MIDLF 518

Query: 246 IRFGRLEEAQNLFDTVPV-RDEISWTSMID-----GYLSVGQ 281
            R GRLEEA    + +P   D I WT+++      G L +G+
Sbjct: 519 SRSGRLEEAMRFINGMPFPPDAIGWTTLLSACRNKGNLEIGK 560



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 56/198 (28%), Positives = 97/198 (48%), Gaps = 19/198 (9%)

Query: 16  SSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNV-- 73
           S +T Y K G ID++  LF  M  R+ VS+ AM+S + Q GR  E  +LF++M +  +  
Sbjct: 411 SLVTLYGKCGDIDDSTRLFNEMNVRDAVSWTAMVSAYAQFGRAVETIQLFDKMVQHGLKP 470

Query: 74  --VSWTAMICGLADAGRVCEARKLFEEMPER-----NVVSWNSMVVGLIRNGELNEARKV 126
             V+ T +I   + AG V + ++ F+ M        ++  ++ M+    R+G L EA + 
Sbjct: 471 DGVTLTGVISACSRAGLVEKGQRYFKLMTSEYGIVPSIGHYSCMIDLFSRSGRLEEAMRF 530

Query: 127 FNSMPI-KNVISWNAMIA-----GYVECCM-MGEAIVLFEEMEERNVVTWTSMISGYCRA 179
            N MP   + I W  +++     G +E      E+++   E++  +   +T + S Y   
Sbjct: 531 INGMPFPPDAIGWTTLLSACRNKGNLEIGKWAAESLI---ELDPHHPAGYTLLSSIYASK 587

Query: 180 GEVEEGYCLFRRMPRKNV 197
           G+ +    L R M  KNV
Sbjct: 588 GKWDSVAQLRRGMREKNV 605



 Score = 43.9 bits (102), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 42/188 (22%), Positives = 77/188 (40%), Gaps = 11/188 (5%)

Query: 352 RQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHH 411
           + IH  +++     +  L N ++  YA       A  +F  +   +L SWN++++ +S  
Sbjct: 26  KMIHGNIIRALPYPETFLYNNIVHAYALMKSSTYARRVFDRIPQPNLFSWNNLLLAYSKA 85

Query: 412 GLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEH 471
           GL +E    FE + +     + VT+  ++   S +GLV    + +N M   +        
Sbjct: 86  GLISEMESTFEKLPDR----DGVTWNVLIEGYSLSGLVGAAVKAYNTMMRDFSANLTRVT 141

Query: 472 YVSMINLLGRAGKI---KEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRL 528
            ++M+ L    G +   K+    V++L FE    +   LL    +   N      A K  
Sbjct: 142 LMTMLKLSSSNGHVSLGKQIHGQVIKLGFESYLLVGSPLL----YMYANVGCISDAKKVF 197

Query: 529 LELDPLNA 536
             LD  N 
Sbjct: 198 YGLDDRNT 205


>gi|347954516|gb|AEP33758.1| organelle transcript processing 82, partial [Barbarea verna]
          Length = 710

 Score =  294 bits (753), Expect = 7e-77,   Method: Compositional matrix adjust.
 Identities = 189/558 (33%), Positives = 296/558 (53%), Gaps = 24/558 (4%)

Query: 58  LSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRN 117
           L  A  +FE + E N++ W  M  G A +     A KL+  M    ++  +     L+++
Sbjct: 53  LPYAISVFETIQEPNLLIWNTMFRGHALSSDPVSAIKLYVCMISLGLLPNSYTFPFLLKS 112

Query: 118 G---ELNEARKVFNSMPIK-----NVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTW 169
               ++++  +  +   +K     ++    ++I+ YV+     +A  +F+    R+VV++
Sbjct: 113 CAKLKVSKEGQQIHGHVLKLGYELDLYVHTSLISMYVKNGRWKDAHKVFDGSSHRDVVSY 172

Query: 170 TSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGI--- 226
           T++I+GY   G +E    +F  +P K+VVSW A+I G+A  G +KE+L LF EM      
Sbjct: 173 TALITGYASRGYIESAQKMFDEIPVKDVVSWNAIISGYADTGNNKEALDLFKEMMKTNVK 232

Query: 227 CDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWT-SMIDGYLSVGQVSNA 285
            D      V S  +  +G I+ GR  +  +  D   +   +    ++ID Y   G+V  A
Sbjct: 233 PDESTMVTVVSACAQ-SGSIQLGR--QVHSWIDDHGLGSNLKIVNALIDLYSKCGEVETA 289

Query: 286 YYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGAT 345
             LF  + ++D ++W  MI G     L+ EA  LF EM   G  P + T   +  A    
Sbjct: 290 CGLFQGLSNKDVISWNTMIGGYTHLNLYKEALLLFQEMLRSGENPNDVTMLSILPACAQL 349

Query: 346 ANIDLGRQIHCVLMK-----TESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVS 400
             ID GR IH  + K     T + S   L   LI MYAKCG I+ A+ +F++M  R L +
Sbjct: 350 GAIDFGRWIHVYIDKRIKGVTNASS---LRTSLIDMYAKCGDIEAAHQVFNSMHHRTLSA 406

Query: 401 WNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMF 460
            N+M+ GF+ HG AN    +F  M ++G  P+ +TF+G+LSACSH+G++  G  +F +M 
Sbjct: 407 CNAMIFGFAMHGRANAAFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGRRIFRSMT 466

Query: 461 DVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEI 520
             YKI P  EHY  MI+LLG  G  KEAEE +  +  EPD  IW +LL AC    GN E+
Sbjct: 467 QNYKITPKLEHYGCMIDLLGHLGLFKEAEEMINTMTMEPDGVIWCSLLKACKM-HGNVEL 525

Query: 521 AEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNG 580
            E  A++L++++P N  ++V+L NIYA +GR  E   +R  +  KG++KVPGCS +  + 
Sbjct: 526 GESFAQKLIKIEPENPGSYVLLSNIYATAGRWNEVANIRALLNDKGMKKVPGCSSIEIDS 585

Query: 581 GIQMFLSGDKIPAQVAEI 598
            +  F+ GDK   +  EI
Sbjct: 586 VVHEFIIGDKFHPRNREI 603



 Score =  173 bits (438), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 110/398 (27%), Positives = 198/398 (49%), Gaps = 20/398 (5%)

Query: 108 NSMVVGLIRNGELNEARKVFNSMPIKNVI-SWNAMIAGYVECCMMGE-------AIVLFE 159
           N   + L+ N +  ++ ++ ++  IK  + + N  ++  +E C++         AI +FE
Sbjct: 2   NHPSLSLLHNCKTLQSLRIIHAQMIKTGLHNTNYALSRLLEFCILSPNFDGLPYAISVFE 61

Query: 160 EMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLL 219
            ++E N++ W +M  G+  + +      L+  M     +S   +   + +    K    L
Sbjct: 62  TIQEPNLLIWNTMFRGHALSSDPVSAIKLYVCM-----ISLGLLPNSYTFPFLLKSCAKL 116

Query: 220 FIEMKG------ICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMI 273
            +  +G      +   G   ++    S+I+ Y++ GR ++A  +FD    RD +S+T++I
Sbjct: 117 KVSKEGQQIHGHVLKLGYELDLYVHTSLISMYVKNGRWKDAHKVFDGSSHRDVVSYTALI 176

Query: 274 DGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNA 333
            GY S G + +A  +F  +P +D V+W A+ISG        EA  LF EM    V P  +
Sbjct: 177 TGYASRGYIESAQKMFDEIPVKDVVSWNAIISGYADTGNNKEALDLFKEMMKTNVKPDES 236

Query: 334 TFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNM 393
           T   +  A   + +I LGRQ+H  +      S+L + N LI +Y+KCG ++ A  +F  +
Sbjct: 237 TMVTVVSACAQSGSIQLGRQVHSWIDDHGLGSNLKIVNALIDLYSKCGEVETACGLFQGL 296

Query: 394 VSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRG- 452
            ++D++SWN+M+ G++H  L  E L +F+ ML SG +PN VT L IL AC+  G +  G 
Sbjct: 297 SNKDVISWNTMIGGYTHLNLYKEALLLFQEMLRSGENPNDVTMLSILPACAQLGAIDFGR 356

Query: 453 WELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEE 490
           W        +  +        S+I++  + G I+ A +
Sbjct: 357 WIHVYIDKRIKGVTNASSLRTSLIDMYAKCGDIEAAHQ 394



 Score =  145 bits (366), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 132/488 (27%), Positives = 207/488 (42%), Gaps = 74/488 (15%)

Query: 9   SLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEM 68
            L VH TS I+ Y K G   +A  +F     R+VVSY A+++G+   G +  A+++F+E+
Sbjct: 137 DLYVH-TSLISMYVKNGRWKDAHKVFDGSSHRDVVSYTALITGYASRGYIESAQKMFDEI 195

Query: 69  PERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLI----RNGELNEAR 124
           P ++VVSW A+I G AD G   EA  LF+EM + NV    S +V ++    ++G +   R
Sbjct: 196 PVKDVVSWNAIISGYADTGNNKEALDLFKEMMKTNVKPDESTMVTVVSACAQSGSIQLGR 255

Query: 125 KVFNSMPI----KNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAG 180
           +V + +       N+   NA+I  Y +C  +  A  LF+ +  ++V++W +MI GY    
Sbjct: 256 QVHSWIDDHGLGSNLKIVNALIDLYSKCGEVETACGLFQGLSNKDVISWNTMIGGYTHLN 315

Query: 181 EVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNS 240
             +E   LF+ M R           G   N     S+L      G  D G   +V   + 
Sbjct: 316 LYKEALLLFQEMLR----------SGENPNDVTMLSILPACAQLGAIDFGRWIHVY-IDK 364

Query: 241 MINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAW 300
            I G      L                  TS+ID Y   G +  A+ +F++M  R   A 
Sbjct: 365 RIKGVTNASSLR-----------------TSLIDMYAKCGDIEAAHQVFNSMHHRTLSAC 407

Query: 301 TAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMK 360
            AMI G   +     A  +F  MR +G+ P + TF  L  A   +  +DLGR+I   + +
Sbjct: 408 NAMIFGFAMHGRANAAFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGRRIFRSMTQ 467

Query: 361 TESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKV 420
                                            ++  L  +  M+    H GL  E  ++
Sbjct: 468 NYK------------------------------ITPKLEHYGCMIDLLGHLGLFKEAEEM 497

Query: 421 FESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQP-GPEHYVSMINLL 479
             +M      P+ V +  +L AC   G V  G      +    KI+P  P  YV + N+ 
Sbjct: 498 INTMT---MEPDGVIWCSLLKACKMHGNVELGESFAQKLI---KIEPENPGSYVLLSNIY 551

Query: 480 GRAGKIKE 487
             AG+  E
Sbjct: 552 ATAGRWNE 559


>gi|449488546|ref|XP_004158080.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21300-like [Cucumis sativus]
          Length = 762

 Score =  294 bits (753), Expect = 8e-77,   Method: Compositional matrix adjust.
 Identities = 197/644 (30%), Positives = 327/644 (50%), Gaps = 68/644 (10%)

Query: 15  TSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVV 74
           +S I  Y++ G + +A+ LF  +PQ++ V +N ML+G+++NG    A ++F EM    + 
Sbjct: 97  SSLIKLYAENGHLSDAQYLFDNIPQKDSVLWNVMLNGYVKNGDSGNAIKIFLEMRHSEIK 156

Query: 75  -SWTAMICGLADAGRVCEARKLFEEMPERNVVS-----------WNSMVVGLIRNGELNE 122
            +     C L+    VC +  + +   + + ++            N+++    +   L  
Sbjct: 157 PNSVTFACVLS----VCASEAMLDLGTQLHGIAVGCGLELDSPVANTLLAMYSKCQCLQA 212

Query: 123 ARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNV----VTWTSM------ 172
           ARK+F+++P  +++SWN +I+GYV+  +MGEA  LF  M    +    +T+ S       
Sbjct: 213 ARKLFDTLPQSDLVSWNGIISGYVQNGLMGEAEHLFRGMISAGIKPDSITFASFLPCVNE 272

Query: 173 ---------ISGYC-RAGEVEEGY-----------CLFRRMPRKNV--------VSWTAM 203
                    I GY  R   V + +           C    M +KN+        V  T M
Sbjct: 273 LLSLKHCKEIHGYIIRHAVVLDVFLKSALIDIYFKCRDVEMAQKNLCQSSSFDTVVCTTM 332

Query: 204 IGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPV 263
           I G+  NG +KE+L  F   + +          + +S+   +     L   + L  ++ +
Sbjct: 333 ISGYVLNGKNKEALEAF---RWLVQERMKPTSVTFSSIFPAFAGLAALNLGKELHGSI-I 388

Query: 264 RDEIS-----WTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATY 318
           + ++       ++++D Y   G++  A  +F+ + ++DA+ W +MI+   QN    EA  
Sbjct: 389 KTKLDEKCHVGSAILDMYAKCGRLDLACRVFNRITEKDAICWNSMITSCSQNGRPGEAIN 448

Query: 319 LFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYA 378
           LF +M   G      + S    A      +  G++IH +++K    SDL  E+ LI MYA
Sbjct: 449 LFRQMGMEGTRYDCVSISGALSACANLPALHYGKEIHGLMIKGPLRSDLYAESSLIDMYA 508

Query: 379 KCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLG 438
           KCG ++ +  +F  M  ++ VSWNS++  + +HG   E L +F  ML +G  P+ VTFLG
Sbjct: 509 KCGNLNFSRRVFDRMQEKNEVSWNSIISAYGNHGDLKECLALFHEMLRNGIQPDHVTFLG 568

Query: 439 ILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFE 498
           I+SAC HAG V  G   ++ M + Y I    EHY  + ++ GRAG++ EA E +  +PF 
Sbjct: 569 IISACGHAGQVDEGIRYYHLMTEEYGIPARMEHYACVADMFGRAGRLHEAFETINSMPFP 628

Query: 499 PDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKL 558
           PD  +WG LLGAC    GN E+AE A+K L +LDPLN+  +V+L N+ A +G+  +  K+
Sbjct: 629 PDAGVWGTLLGACHI-HGNVELAEVASKHLFDLDPLNSGYYVLLANVQAGAGKWRKVLKV 687

Query: 559 RMDMGLKGVRKVPGCSWLMRNGGIQMFLSGD---KIPAQVAEIL 599
           R  M  +GVRKVPG SW+  N    MF++ D    + AQ+  +L
Sbjct: 688 RSIMKERGVRKVPGYSWIEVNNATHMFVAADGSHPLTAQIYSVL 731



 Score =  158 bits (400), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 139/574 (24%), Positives = 240/574 (41%), Gaps = 83/574 (14%)

Query: 21  YSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEM------PERNVV 74
           Y + G + +AK LF  +      ++N M+ GF   G+ + A   + +M      P++   
Sbjct: 2   YVRTGSLKDAKNLFYTLQLGCTSAWNWMIRGFTMMGQFNYALLFYLKMLGAGVSPDKYTF 61

Query: 75  SWTA-MICGLADA--GRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMP 131
            +     CGL     G++         + E +V   +S++     NG L++A+ +F+++P
Sbjct: 62  PYVVKACCGLKSVKMGKIVHETVNLMGLKE-DVFVGSSLIKLYAENGHLSDAQYLFDNIP 120

Query: 132 IKNVISWNAMIAGYVECCMMGEAIVLFEEME----ERNVVTWT----------------- 170
            K+ + WN M+ GYV+    G AI +F EM     + N VT+                  
Sbjct: 121 QKDSVLWNVMLNGYVKNGDSGNAIKIFLEMRHSEIKPNSVTFACVLSVCASEAMLDLGTQ 180

Query: 171 ------------------SMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGF 212
                             ++++ Y +   ++    LF  +P+ ++VSW  +I G+  NG 
Sbjct: 181 LHGIAVGCGLELDSPVANTLLAMYSKCQCLQAARKLFDTLPQSDLVSWNGIISGYVQNGL 240

Query: 213 HKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQN-LFDTVPVRDEISWTS 271
             E+  LF  M       ++    S    +N  +     +E    +     V D    ++
Sbjct: 241 MGEAEHLFRGMISAGIKPDSITFASFLPCVNELLSLKHCKEIHGYIIRHAVVLDVFLKSA 300

Query: 272 MIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPL 331
           +ID Y     V  A          D V  T MISG V N    EA   F  +    + P 
Sbjct: 301 LIDIYFKCRDVEMAQKNLCQSSSFDTVVCTTMISGYVLNGKNKEALEAFRWLVQERMKPT 360

Query: 332 NATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFS 391
           + TFS +F A    A ++LG+++H  ++KT+ +    + + ++ MYAKCG +D A  +F+
Sbjct: 361 SVTFSSIFPAFAGLAALNLGKELHGSIIKTKLDEKCHVGSAILDMYAKCGRLDLACRVFN 420

Query: 392 NMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSR 451
            +  +D + WNSM+   S +G   E + +F  M   GT  + V+  G LSAC++   +  
Sbjct: 421 RITEKDAICWNSMITSCSQNGRPGEAINLFRQMGMEGTRYDCVSISGALSACANLPALHY 480

Query: 452 GWELFNAMF------DVYKIQPGPEHYV------------------------SMINLLGR 481
           G E+   M       D+Y      + Y                         S+I+  G 
Sbjct: 481 GKEIHGLMIKGPLRSDLYAESSLIDMYAKCGNLNFSRRVFDRMQEKNEVSWNSIISAYGN 540

Query: 482 AGKIKEAEEF---VLRLPFEPDHRIWGALLGACG 512
            G +KE       +LR   +PDH  +  ++ ACG
Sbjct: 541 HGDLKECLALFHEMLRNGIQPDHVTFLGIISACG 574



 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 93/433 (21%), Positives = 195/433 (45%), Gaps = 35/433 (8%)

Query: 7   PKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFL----QNGRLSEAR 62
           P+S +V     I+ Y + G + EA+ LF+ M    +   +   + FL    +   L   +
Sbjct: 221 PQSDLVSWNGIISGYVQNGLMGEAEHLFRGMISAGIKPDSITFASFLPCVNELLSLKHCK 280

Query: 63  RLFEEMPERNVVSWTAMICGLADAGRVCE----ARKLFEEMPERNVVSWNSMVVGLIRNG 118
            +   +    VV    +   L D    C     A+K   +    + V   +M+ G + NG
Sbjct: 281 EIHGYIIRHAVVLDVFLKSALIDIYFKCRDVEMAQKNLCQSSSFDTVVCTTMISGYVLNG 340

Query: 119 ELNEARKVFNSMPIKNV----ISWNAMIAGY--VECCMMGEAI---VLFEEMEERNVVTW 169
           +  EA + F  +  + +    ++++++   +  +    +G+ +   ++  +++E+  V  
Sbjct: 341 KNKEALEAFRWLVQERMKPTSVTFSSIFPAFAGLAALNLGKELHGSIIKTKLDEKCHVG- 399

Query: 170 TSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDN 229
           ++++  Y + G ++    +F R+  K+ + W +MI   + NG   E++ LF +M G+   
Sbjct: 400 SAILDMYAKCGRLDLACRVFNRITEKDAICWNSMITSCSQNGRPGEAINLFRQM-GMEGT 458

Query: 230 GNNC-----NVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEI-SWTSMIDGYLSVGQVS 283
             +C      + +C ++    + +G+  E   L    P+R ++ + +S+ID Y   G ++
Sbjct: 459 RYDCVSISGALSACANL--PALHYGK--EIHGLMIKGPLRSDLYAESSLIDMYAKCGNLN 514

Query: 284 NAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAG 343
            +  +F  M +++ V+W ++IS    +    E   LF EM  +G+ P + TF  +  A G
Sbjct: 515 FSRRVFDRMQEKNEVSWNSIISAYGNHGDLKECLALFHEMLRNGIQPDHVTFLGIISACG 574

Query: 344 ATANIDLG-RQIHCVLMKTESESDLILEN--CLISMYAKCGVIDNAYNIFSNM-VSRDLV 399
               +D G R  H  LM  E      +E+  C+  M+ + G +  A+   ++M    D  
Sbjct: 575 HAGQVDEGIRYYH--LMTEEYGIPARMEHYACVADMFGRAGRLHEAFETINSMPFPPDAG 632

Query: 400 SWNSMVMGFSHHG 412
            W +++     HG
Sbjct: 633 VWGTLLGACHIHG 645



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 33/133 (24%), Positives = 61/133 (45%), Gaps = 2/133 (1%)

Query: 376 MYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVT 435
           MY + G + +A N+F  +      +WN M+ GF+  G  N  L  +  ML +G  P+  T
Sbjct: 1   MYVRTGSLKDAKNLFYTLQLGCTSAWNWMIRGFTMMGQFNYALLFYLKMLGAGVSPDKYT 60

Query: 436 FLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRL 495
           F  ++ AC     V  G ++ +   ++  ++       S+I L    G + +A+     +
Sbjct: 61  FPYVVKACCGLKSVKMG-KIVHETVNLMGLKEDVFVGSSLIKLYAENGHLSDAQYLFDNI 119

Query: 496 PFEPDHRIWGALL 508
           P + D  +W  +L
Sbjct: 120 P-QKDSVLWNVML 131


>gi|296090147|emb|CBI39966.3| unnamed protein product [Vitis vinifera]
          Length = 726

 Score =  294 bits (753), Expect = 8e-77,   Method: Compositional matrix adjust.
 Identities = 163/545 (29%), Positives = 278/545 (51%), Gaps = 47/545 (8%)

Query: 100 PERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFE 159
           P  NV  WNS++  L  NG  +EA  +++      +          +  C       + +
Sbjct: 76  PSNNVYLWNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFPSVINACAGLLDFEMAK 135

Query: 160 EMEER--------NVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNG 211
            + +R        ++    ++I  YCR  ++++   +F  MP ++VVSW ++I G+  NG
Sbjct: 136 SIHDRVLDMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNANG 195

Query: 212 F-------HKESLLLFIEM---------------------------KGICD----NGNNC 233
           +       + +S+ LF+EM                           K + D    +G  C
Sbjct: 196 YWNEALEIYYQSIKLFMEMVNQFKPDLLTITSILQACGHLGDLEFGKYVHDYMITSGYEC 255

Query: 234 NVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMP 293
           +  + N +IN Y + G L  +Q +F  +  +D +SW SMI+ Y+  G++ ++  +F NM 
Sbjct: 256 DTTASNILINMYAKCGNLLASQEVFSGMKCKDSVSWNSMINVYIQNGKMGDSLKVFENMK 315

Query: 294 DRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQ 353
            RD + W  +I+  V +E       +   MR  GV P  AT   +       A    G++
Sbjct: 316 ARDIITWNTIIASCVHSEDCNLGLRMISRMRTEGVTPDMATMLSILPVCSLLAAKRQGKE 375

Query: 354 IHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGL 413
           IH  + K   ESD+ + N LI MY+KCG + N++ +F  M ++D+V+W +++     +G 
Sbjct: 376 IHGCIFKLGLESDVPVGNVLIEMYSKCGSLRNSFQVFKLMKTKDVVTWTALISACGMYGE 435

Query: 414 ANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYV 473
             + ++ F  M  +G  P+ V F+ I+ ACSH+GLV  G   F+ M   YKI+P  EHY 
Sbjct: 436 GKKAVRAFGEMEAAGIVPDHVAFVAIIFACSHSGLVEEGLNYFHRMKKDYKIEPRIEHYA 495

Query: 474 SMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDP 533
            +++LL R+  + +AE+F+L +P +PD  IWGALL AC    G+ EIAE  ++R++EL+P
Sbjct: 496 CVVDLLSRSALLDKAEDFILSMPLKPDSSIWGALLSACRM-SGDTEIAERVSERIIELNP 554

Query: 534 LNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPA 593
            +   +V++ NIYAA G+  +   +R  +  +G++K PGCSW+     + +F +G K   
Sbjct: 555 DDTGYYVLVSNIYAALGKWDQVRSIRKSIKARGLKKDPGCSWMEIQNKVYVFGTGTKFFE 614

Query: 594 QVAEI 598
           Q  E+
Sbjct: 615 QFEEV 619



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 82/331 (24%), Positives = 156/331 (47%), Gaps = 29/331 (8%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEAR-------RLFEEMPE 70
           I  Y +   +D+A+ +F+ MP R+VVS+N+++SG+  NG  +EA        +LF EM  
Sbjct: 157 IDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNANGYWNEALEIYYQSIKLFMEMVN 216

Query: 71  R---NVVSWTAMICGLADAGRVCEARKLFEEMP----ERNVVSWNSMVVGLIRNGELNEA 123
           +   ++++ T+++      G +   + + + M     E +  + N ++    + G L  +
Sbjct: 217 QFKPDLLTITSILQACGHLGDLEFGKYVHDYMITSGYECDTTASNILINMYAKCGNLLAS 276

Query: 124 RKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVE 183
           ++VF+ M  K+ +SWN+MI  Y++   MG+++ +FE M+ R+++TW ++I+    + +  
Sbjct: 277 QEVFSGMKCKDSVSWNSMINVYIQNGKMGDSLKVFENMKARDIITWNTIIASCVHSEDCN 336

Query: 184 EGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKG------ICDNGNNCNVQS 237
            G  +  RM  + V    A +             LL  + +G      I   G   +V  
Sbjct: 337 LGLRMISRMRTEGVTPDMATMLSIL-----PVCSLLAAKRQGKEIHGCIFKLGLESDVPV 391

Query: 238 CNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDR-- 295
            N +I  Y + G L  +  +F  +  +D ++WT++I      G+   A   F  M     
Sbjct: 392 GNVLIEMYSKCGSLRNSFQVFKLMKTKDVVTWTALISACGMYGEGKKAVRAFGEMEAAGI 451

Query: 296 --DAVAWTAMISGLVQNELFVEATYLFMEMR 324
             D VA+ A+I     + L  E    F  M+
Sbjct: 452 VPDHVAFVAIIFACSHSGLVEEGLNYFHRMK 482



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 58/269 (21%), Positives = 131/269 (48%), Gaps = 15/269 (5%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWT 77
           I  Y+K G +  ++ +F  M  ++ VS+N+M++ ++QNG++ ++ ++FE M  R++++W 
Sbjct: 264 INMYAKCGNLLASQEVFSGMKCKDSVSWNSMINVYIQNGKMGDSLKVFENMKARDIITWN 323

Query: 78  AMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARK--------VFNS 129
            +I     +       ++   M    V    + ++ ++    L  A++        +F  
Sbjct: 324 TIIASCVHSEDCNLGLRMISRMRTEGVTPDMATMLSILPVCSLLAAKRQGKEIHGCIFKL 383

Query: 130 MPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLF 189
               +V   N +I  Y +C  +  +  +F+ M+ ++VVTWT++IS     GE ++    F
Sbjct: 384 GLESDVPVGNVLIEMYSKCGSLRNSFQVFKLMKTKDVVTWTALISACGMYGEGKKAVRAF 443

Query: 190 RRMPRKNV----VSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGY 245
             M    +    V++ A+I   + +G  +E L  F  MK   D      ++    +++  
Sbjct: 444 GEMEAAGIVPDHVAFVAIIFACSHSGLVEEGLNYFHRMKK--DYKIEPRIEHYACVVDLL 501

Query: 246 IRFGRLEEAQNLFDTVPVRDEIS-WTSMI 273
            R   L++A++   ++P++ + S W +++
Sbjct: 502 SRSALLDKAEDFILSMPLKPDSSIWGALL 530


>gi|449445041|ref|XP_004140282.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g27110-like [Cucumis sativus]
 gi|449481162|ref|XP_004156100.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g27110-like [Cucumis sativus]
          Length = 693

 Score =  294 bits (753), Expect = 8e-77,   Method: Compositional matrix adjust.
 Identities = 183/604 (30%), Positives = 295/604 (48%), Gaps = 59/604 (9%)

Query: 41  NVVSYNAMLSGFLQNGRLSEARRLFEEM-------PERNVVSWTAMICG----------- 82
           +V  +NA+LS +  N R  EA +LF+++       P+          CG           
Sbjct: 69  DVSLWNALLSAYTNNFRFVEALQLFDQLNCNSYVRPDFYTYPVVLKACGGLGRVIYGRRI 128

Query: 83  ----------------------LADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGEL 120
                                  A   +  +A KLF+E P+R+V  WN+++    ++G+ 
Sbjct: 129 HNHLLKTGLIWDVFVGSSLMNMYAKCDQFVDAIKLFDEFPQRDVGCWNAVISCYFKDGKA 188

Query: 121 NEARKVFNSMPI----KNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVV----TWTSM 172
             A K F+ M       N +++  +++       +     +  E+ ER ++      +++
Sbjct: 189 EMALKTFDKMKELGFEPNSVTFTVVVSSCTRLLNLERGKEVHRELIERRILLDAFVLSAL 248

Query: 173 ISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNN 232
           +  Y + G +E    +F ++PRKN ++W AMI G++  G  +  + L + M    D G  
Sbjct: 249 VDMYGKCGCLEMAKEVFEKIPRKNAITWNAMITGYSLKGDSRSCIELLMRMN---DEGTK 305

Query: 233 CNVQSCNSMING-----YIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYY 287
             + +  S+I        +R G+      L + + V D     S+ID Y   G VS+A  
Sbjct: 306 PTLMTLTSIIYASSRSVQLRHGKFIHGYILRNRIDV-DIFIDVSLIDFYFKCGYVSSAET 364

Query: 288 LFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATAN 347
           +F  +   + V+W  MISG V     ++A +++  M+ H V P   TFS    A    A 
Sbjct: 365 IFRTISKNEVVSWNVMISGHVMVGNHIQALHIYDNMKEHHVKPDALTFSSTLSACSQLAA 424

Query: 348 IDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMG 407
           +D GR++H  ++  + E++ I+   L+ MYAKCG +D A  +F  +  RDLVSW SM+  
Sbjct: 425 LDKGRELHYCIINHKLEANEIVMGALLDMYAKCGDVDEARKLFHQLPKRDLVSWTSMIFA 484

Query: 408 FSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQP 467
           +  HG A+E L++F+ M +     +SVTFL +LSACSHAGLV  G+  FN M   Y I+P
Sbjct: 485 YGSHGQASEALRLFDEMQKLNVRADSVTFLAVLSACSHAGLVDEGYMYFNEMVVQYDIKP 544

Query: 468 GPEHYVSMINLLGRAGKIKEAEEFVLRLP-FEPDHRIWGALLGACGFCEGNAEIAEHAAK 526
           G EHY  +I+LLGRAG++ EA E + R      D  +   L  AC     N  +     K
Sbjct: 545 GIEHYSCLIDLLGRAGRLHEAYEILQRSKETRSDIGLLSTLFSAC-LLHNNFVLGIQIGK 603

Query: 527 RLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFL 586
            L+E+DP +   +++L N+YA+  +  E  K+R  M   G++K PGCSW+  N  I  F 
Sbjct: 604 MLIEVDPDDPSTYILLSNMYASVNKWDEVRKVRRKMKELGLKKSPGCSWIEINQRIHPFF 663

Query: 587 SGDK 590
           + DK
Sbjct: 664 AEDK 667



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 105/428 (24%), Positives = 187/428 (43%), Gaps = 55/428 (12%)

Query: 15  TSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMP----E 70
           +S +  Y+K     +A  LF   PQR+V  +NA++S + ++G+   A + F++M     E
Sbjct: 145 SSLMNMYAKCDQFVDAIKLFDEFPQRDVGCWNAVISCYFKDGKAEMALKTFDKMKELGFE 204

Query: 71  RNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLI----RNGELNEARKV 126
            N V++T ++        +   +++  E+ ER ++    ++  L+    + G L  A++V
Sbjct: 205 PNSVTFTVVVSSCTRLLNLERGKEVHRELIERRILLDAFVLSALVDMYGKCGCLEMAKEV 264

Query: 127 FNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEER----NVVTWTSMISG------- 175
           F  +P KN I+WNAMI GY         I L   M +      ++T TS+I         
Sbjct: 265 FEKIPRKNAITWNAMITGYSLKGDSRSCIELLMRMNDEGTKPTLMTLTSIIYASSRSVQL 324

Query: 176 ----------------------------YCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGF 207
                                       Y + G V     +FR + +  VVSW  MI G 
Sbjct: 325 RHGKFIHGYILRNRIDVDIFIDVSLIDFYFKCGYVSSAETIFRTISKNEVVSWNVMISGH 384

Query: 208 AWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVR--- 264
              G H ++L ++  MK   ++    +  + +S ++   +   L++ + L   +      
Sbjct: 385 VMVGNHIQALHIYDNMK---EHHVKPDALTFSSTLSACSQLAALDKGRELHYCIINHKLE 441

Query: 265 -DEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEM 323
            +EI   +++D Y   G V  A  LFH +P RD V+WT+MI     +    EA  LF EM
Sbjct: 442 ANEIVMGALLDMYAKCGDVDEARKLFHQLPKRDLVSWTSMIFAYGSHGQASEALRLFDEM 501

Query: 324 RAHGVPPLNATFSVLFGAAGATANIDLGRQ-IHCVLMKTESESDLILENCLISMYAKCGV 382
           +   V   + TF  +  A      +D G    + ++++ + +  +   +CLI +  + G 
Sbjct: 502 QKLNVRADSVTFLAVLSACSHAGLVDEGYMYFNEMVVQYDIKPGIEHYSCLIDLLGRAGR 561

Query: 383 IDNAYNIF 390
           +  AY I 
Sbjct: 562 LHEAYEIL 569



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 81/286 (28%), Positives = 138/286 (48%), Gaps = 7/286 (2%)

Query: 271 SMIDGYLSVGQVSNAYYLFH-NMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHG-V 328
           S+I  Y S    ++A  +F  N    D   W A++S    N  FVEA  LF ++  +  V
Sbjct: 43  SLIGFYFSCHDYASAELVFQTNDCPLDVSLWNALLSAYTNNFRFVEALQLFDQLNCNSYV 102

Query: 329 PPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYN 388
            P   T+ V+  A G    +  GR+IH  L+KT    D+ + + L++MYAKC    +A  
Sbjct: 103 RPDFYTYPVVLKACGGLGRVIYGRRIHNHLLKTGLIWDVFVGSSLMNMYAKCDQFVDAIK 162

Query: 389 IFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGL 448
           +F     RD+  WN+++  +   G A   LK F+ M E G  PNSVTF  ++S+C+    
Sbjct: 163 LFDEFPQRDVGCWNAVISCYFKDGKAEMALKTFDKMKELGFEPNSVTFTVVVSSCTRLLN 222

Query: 449 VSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALL 508
           + RG E+   + +  +I        +++++ G+ G ++ A+E   ++P   +   W A++
Sbjct: 223 LERGKEVHRELIE-RRILLDAFVLSALVDMYGKCGCLEMAKEVFEKIP-RKNAITWNAMI 280

Query: 509 GACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVE 554
                 +G++        R+   D    P  + L +I  AS R V+
Sbjct: 281 TGYSL-KGDSRSCIELLMRM--NDEGTKPTLMTLTSIIYASSRSVQ 323



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 74/330 (22%), Positives = 155/330 (46%), Gaps = 65/330 (19%)

Query: 14  LTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGR----LSEARRLFEEMP 69
           L++ +  Y K G ++ AK +F+ +P++N +++NAM++G+   G     +    R+ +E  
Sbjct: 245 LSALVDMYGKCGCLEMAKEVFEKIPRKNAITWNAMITGYSLKGDSRSCIELLMRMNDEGT 304

Query: 70  ERNVVSWTAMICGLADAGRVCEAR--KLFEEMPERNVVSWN-----SMVVGLIRNGELNE 122
           +  +++ T++I     + R  + R  K       RN +  +     S++    + G ++ 
Sbjct: 305 KPTLMTLTSIIYA---SSRSVQLRHGKFIHGYILRNRIDVDIFIDVSLIDFYFKCGYVSS 361

Query: 123 ARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNV----VTWTSMISG--- 175
           A  +F ++    V+SWN MI+G+V      +A+ +++ M+E +V    +T++S +S    
Sbjct: 362 AETIFRTISKNEVVSWNVMISGHVMVGNHIQALHIYDNMKEHHVKPDALTFSSTLSACSQ 421

Query: 176 --------------------------------YCRAGEVEEGYCLFRRMPRKNVVSWTAM 203
                                           Y + G+V+E   LF ++P++++VSWT+M
Sbjct: 422 LAALDKGRELHYCIINHKLEANEIVMGALLDMYAKCGDVDEARKLFHQLPKRDLVSWTSM 481

Query: 204 IGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCN--SMINGYIRFGRLEEAQNLFDTV 261
           I  +  +G   E+L LF EM+ +     N    S    ++++     G ++E    F+ +
Sbjct: 482 IFAYGSHGQASEALRLFDEMQKL-----NVRADSVTFLAVLSACSHAGLVDEGYMYFNEM 536

Query: 262 PVRDEIS-----WTSMIDGYLSVGQVSNAY 286
            V+ +I      ++ +ID     G++  AY
Sbjct: 537 VVQYDIKPGIEHYSCLIDLLGRAGRLHEAY 566



 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 38/139 (27%), Positives = 76/139 (54%), Gaps = 8/139 (5%)

Query: 3   ERNHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMP----QRNVVSYNAMLSGFLQNGRL 58
           + +H K   +  +S+++  S+   +D+ + L   +     + N +   A+L  + + G +
Sbjct: 401 KEHHVKPDALTFSSTLSACSQLAALDKGRELHYCIINHKLEANEIVMGALLDMYAKCGDV 460

Query: 59  SEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNV----VSWNSMVVGL 114
            EAR+LF ++P+R++VSWT+MI      G+  EA +LF+EM + NV    V++ +++   
Sbjct: 461 DEARKLFHQLPKRDLVSWTSMIFAYGSHGQASEALRLFDEMQKLNVRADSVTFLAVLSAC 520

Query: 115 IRNGELNEARKVFNSMPIK 133
              G ++E    FN M ++
Sbjct: 521 SHAGLVDEGYMYFNEMVVQ 539


>gi|224129792|ref|XP_002320672.1| predicted protein [Populus trichocarpa]
 gi|222861445|gb|EEE98987.1| predicted protein [Populus trichocarpa]
          Length = 720

 Score =  294 bits (753), Expect = 8e-77,   Method: Compositional matrix adjust.
 Identities = 193/596 (32%), Positives = 309/596 (51%), Gaps = 50/596 (8%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWT 77
           I  YSK   +  A   F    + NV S+NA+++ + +   +  A  LF+++P+ ++VS+ 
Sbjct: 50  ILLYSKCNLLTTAHHAFNQTHEPNVFSFNALIAAYAKESLIHVAHHLFDQIPQPDLVSFN 109

Query: 78  AMICGLADAGRVCEARKLFEEMPERNVV----SWNSMV------VGLIRNGELNEARKVF 127
            +I   AD G    A  LF EM E  +V    +++ ++      VGLIR          F
Sbjct: 110 TLINAYADRGDTLSALSLFGEMREMGLVMDGFTFSGVITACCNHVGLIRQLHSLAFSSGF 169

Query: 128 NSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEE--RNVVTWTSMISGYCRAGEVEEG 185
           +S     V   N+++  Y +  ++ EA ++F  M E  R+ V+W SMI  Y +     + 
Sbjct: 170 DSY----VSVKNSLLTYYSKNGILEEAEMVFNGMGEEVRDEVSWNSMIVAYGQHKRGLKA 225

Query: 186 YCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGY 245
             L+R M  +          GF  + F   S+L                  SC   ++G 
Sbjct: 226 LALYRDMVHR----------GFEIDMFTLASVL---------------TTFSCVEDLSGG 260

Query: 246 IRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQ-VSNAYYLFHNMPDRDAVAWTAMI 304
           ++F   +  +  F+    ++    + +ID Y   G  +S +  +F  +   D V W  MI
Sbjct: 261 LQF-HAKAIKTGFN----KNRHVGSGLIDMYAKCGAGMSESRKVFEEICGSDLVVWNTMI 315

Query: 305 SGLVQN-ELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTES 363
           SG  QN EL VEA   F +M+  G  P + +F     A    ++   G+Q H + MK+E 
Sbjct: 316 SGYSQNKELSVEALECFRQMQRAGYWPDDCSFVCAISACSNLSSPSQGKQFHALAMKSEI 375

Query: 364 ESDLI-LENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFE 422
            S+ I + N L++MY+KCG + +A  +F  M   + V+ NS++ G++ HG+  E+L +FE
Sbjct: 376 PSNQISVNNALVTMYSKCGNLQDARKLFQRMPQHNTVTLNSIIAGYAQHGIGTESLNLFE 435

Query: 423 SMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRA 482
            ML +   P S+T + ILSAC+H G V  G + FN M D++ I+P  EHY  MI+LLGRA
Sbjct: 436 QMLAASIAPTSITLVSILSACAHTGRVEEGKKYFNMMKDIFGIEPEAEHYSCMIDLLGRA 495

Query: 483 GKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVL 542
           GK+ EAE  +  +PF P    W ALLGAC    GN E+AE AA + L+L+P NA  +++L
Sbjct: 496 GKLSEAERLIDTMPFSPGSAAWAALLGACRK-YGNMELAEKAANQFLQLEPTNAVPYIML 554

Query: 543 CNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
            ++Y+A+ +  E  ++R  M  +G+RK PGCSW+  N  + +F++ D    ++ EI
Sbjct: 555 ASMYSAARKWEEAARIRKLMRDRGIRKKPGCSWIELNKRVHVFVAEDNSHPRIKEI 610



 Score = 99.4 bits (246), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 116/506 (22%), Positives = 210/506 (41%), Gaps = 76/506 (15%)

Query: 11  VVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPE 70
           V    + I  Y+K   I  A  LF  +PQ ++VS+N +++ +   G    A  LF EM E
Sbjct: 74  VFSFNALIAAYAKESLIHVAHHLFDQIPQPDLVSFNTLINAYADRGDTLSALSLFGEMRE 133

Query: 71  RNVVSWTAMICGLADA--GRVCEARKL----FEEMPERNVVSWNSMVVGLIRNGELNEAR 124
             +V       G+  A    V   R+L    F    +  V   NS++    +NG L EA 
Sbjct: 134 MGLVMDGFTFSGVITACCNHVGLIRQLHSLAFSSGFDSYVSVKNSLLTYYSKNGILEEAE 193

Query: 125 KVFNSM--PIKNVISWNAMIAGYVECCMMGEAIVLFEEMEER----NVVTWTSMISGY-- 176
            VFN M   +++ +SWN+MI  Y +     +A+ L+ +M  R    ++ T  S+++ +  
Sbjct: 194 MVFNGMGEEVRDEVSWNSMIVAYGQHKRGLKALALYRDMVHRGFEIDMFTLASVLTTFSC 253

Query: 177 -----------------------------------CRAGEVEEGYCLFRRMPRKNVVSWT 201
                                              C AG + E   +F  +   ++V W 
Sbjct: 254 VEDLSGGLQFHAKAIKTGFNKNRHVGSGLIDMYAKCGAG-MSESRKVFEEICGSDLVVWN 312

Query: 202 AMIGGFAWNG-FHKESLLLFIEMKGIC----DNGNNCNVQSCNSMINGYIRFGRLEEAQN 256
            MI G++ N     E+L  F +M+       D    C + +C+++ +     G+   A  
Sbjct: 313 TMISGYSQNKELSVEALECFRQMQRAGYWPDDCSFVCAISACSNLSSP--SQGKQFHALA 370

Query: 257 LFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEA 316
           +   +P        +++  Y   G + +A  LF  MP  + V   ++I+G  Q+ +  E+
Sbjct: 371 MKSEIPSNQISVNNALVTMYSKCGNLQDARKLFQRMPQHNTVTLNSIIAGYAQHGIGTES 430

Query: 317 TYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKT----ESESDLILENC 372
             LF +M A  + P + T   +  A   T  ++ G++ +  +MK     E E++    +C
Sbjct: 431 LNLFEQMLAASIAPTSITLVSILSACAHTGRVEEGKK-YFNMMKDIFGIEPEAEHY--SC 487

Query: 373 LISMYAKCGVIDNAYNIFSNM-VSRDLVSWNSMVMGFSHHG---LANETLKVFESMLESG 428
           +I +  + G +  A  +   M  S    +W +++     +G   LA +    F  +  + 
Sbjct: 488 MIDLLGRAGKLSEAERLIDTMPFSPGSAAWAALLGACRKYGNMELAEKAANQFLQLEPT- 546

Query: 429 THPNSVTFLGILSACSHAGLVSRGWE 454
              N+V ++ + S  S A    R WE
Sbjct: 547 ---NAVPYIMLASMYSAA----RKWE 565



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 45/179 (25%), Positives = 79/179 (44%), Gaps = 40/179 (22%)

Query: 346 ANIDL--GRQIHCVLMKTESESDLILENCLISMYAKCGVIDN------------------ 385
           AN DL  G+ +H + +K+   S   L N  I +Y+KC ++                    
Sbjct: 20  ANKDLLTGKSLHTIYLKSLIPSSTYLSNHFILLYSKCNLLTTAHHAFNQTHEPNVFSFNA 79

Query: 386 -------------AYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPN 432
                        A+++F  +   DLVS+N+++  ++  G     L +F  M E G   +
Sbjct: 80  LIAAYAKESLIHVAHHLFDQIPQPDLVSFNTLINAYADRGDTLSALSLFGEMREMGLVMD 139

Query: 433 SVTFLGILSA-CSHAGLVSRGWEL-FNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAE 489
             TF G+++A C+H GL+ +   L F++ FD Y          S++    + G ++EAE
Sbjct: 140 GFTFSGVITACCNHVGLIRQLHSLAFSSGFDSYVSVKN-----SLLTYYSKNGILEEAE 193


>gi|413934265|gb|AFW68816.1| hypothetical protein ZEAMMB73_462632 [Zea mays]
          Length = 648

 Score =  294 bits (753), Expect = 9e-77,   Method: Compositional matrix adjust.
 Identities = 164/447 (36%), Positives = 253/447 (56%), Gaps = 12/447 (2%)

Query: 151 MGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMP------RKNVVSWTAMI 204
           M  A  LF+E   R+VV+W ++I GY R+G   E   LF R+       R + V+    +
Sbjct: 172 MAFARRLFDESPVRDVVSWNTLIGGYVRSGLPREALELFWRLAEDGNAVRPDEVTVIGAV 231

Query: 205 GGFAWNGFHKESLLLFIEMKGICDN-GNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPV 263
            G A  G     L L   +    DN G  C V+  N++++ Y++ G LE A ++F+ +  
Sbjct: 232 SGCAQMG----DLELGKRLHEFVDNKGVRCTVRLMNAVMDMYVKCGSLELANSVFERISN 287

Query: 264 RDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEM 323
           R  +SWT+MI G+  +G + +A  LF  MP+RD   W A+++G VQN+   EA  LF EM
Sbjct: 288 RTAVSWTTMIVGHARLGMMEDARMLFDEMPERDVFPWNALMAGYVQNKQGKEAIALFHEM 347

Query: 324 RAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVI 383
           +   V P   T   L  A      +++G  +H  + + +    + L   L+ MYAKCG I
Sbjct: 348 QKSKVDPNEITMVNLLSACSQLGALEMGMWVHHYIDRHKLHLSVALGTSLVDMYAKCGNI 407

Query: 384 DNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSAC 443
             A  +F+ +  ++ ++W SM+ G ++HG A+E ++ F+ M++ G  P+ +TF+G+LSAC
Sbjct: 408 KKAICVFNEIPVQNALTWTSMICGLANHGHADEAIEYFQRMIDLGLQPDEITFIGVLSAC 467

Query: 444 SHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRI 503
            HAGLV  G + F+ M   Y ++   +HY  MI+LLGRAG + EAE+ V  +P +PD  +
Sbjct: 468 CHAGLVEAGRQFFSLMHAKYHLERKMKHYSCMIDLLGRAGHLDEAEQLVNAMPMDPDAVV 527

Query: 504 WGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMG 563
           WGAL  AC    GN  + E AA +L+ELDP ++  +V+L N+YA +    +  K+R+ M 
Sbjct: 528 WGALFFACRM-HGNITLGEKAAMKLVELDPSDSGIYVLLANMYAEANMRKKADKVRVMMR 586

Query: 564 LKGVRKVPGCSWLMRNGGIQMFLSGDK 590
             GV KVPGCS +  NG +  F+  DK
Sbjct: 587 HLGVEKVPGCSCIELNGVVHEFIVKDK 613



 Score =  149 bits (376), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 110/388 (28%), Positives = 187/388 (48%), Gaps = 19/388 (4%)

Query: 41  NVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMP 100
           +V   NA +  +   G ++ ARRLF+E P R+VVSW  +I G   +G   EA +LF  + 
Sbjct: 155 DVFVVNAAMHFWSVRGPMAFARRLFDESPVRDVVSWNTLIGGYVRSGLPREALELFWRLA 214

Query: 101 ER-NVVSWNSMVV-----GLIRNGELNEARKVFNSMPIKNVIS----WNAMIAGYVECCM 150
           E  N V  + + V     G  + G+L   +++   +  K V       NA++  YV+C  
Sbjct: 215 EDGNAVRPDEVTVIGAVSGCAQMGDLELGKRLHEFVDNKGVRCTVRLMNAVMDMYVKCGS 274

Query: 151 MGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWN 210
           +  A  +FE +  R  V+WT+MI G+ R G +E+   LF  MP ++V  W A++ G+  N
Sbjct: 275 LELANSVFERISNRTAVSWTTMIVGHARLGMMEDARMLFDEMPERDVFPWNALMAGYVQN 334

Query: 211 GFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEA---QNLFDTVPVRDEI 267
              KE++ LF EM+    + N   +    ++++   + G LE      +  D   +   +
Sbjct: 335 KQGKEAIALFHEMQKSKVDPNEITMV---NLLSACSQLGALEMGMWVHHYIDRHKLHLSV 391

Query: 268 SW-TSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAH 326
           +  TS++D Y   G +  A  +F+ +P ++A+ WT+MI GL  +    EA   F  M   
Sbjct: 392 ALGTSLVDMYAKCGNIKKAICVFNEIPVQNALTWTSMICGLANHGHADEAIEYFQRMIDL 451

Query: 327 GVPPLNATFSVLFGAAGATANIDLGRQIHCVL-MKTESESDLILENCLISMYAKCGVIDN 385
           G+ P   TF  +  A      ++ GRQ   ++  K   E  +   +C+I +  + G +D 
Sbjct: 452 GLQPDEITFIGVLSACCHAGLVEAGRQFFSLMHAKYHLERKMKHYSCMIDLLGRAGHLDE 511

Query: 386 AYNIFSNM-VSRDLVSWNSMVMGFSHHG 412
           A  + + M +  D V W ++      HG
Sbjct: 512 AEQLVNAMPMDPDAVVWGALFFACRMHG 539



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 82/310 (26%), Positives = 149/310 (48%), Gaps = 21/310 (6%)

Query: 12  VHLTSSITKYSKRGFIDEAKALFQLMPQRNVVS----YNAMLSGFLQNGRLSEARRLFEE 67
           V +  +++  ++ G ++  K L + +  + V       NA++  +++ G L  A  +FE 
Sbjct: 225 VTVIGAVSGCAQMGDLELGKRLHEFVDNKGVRCTVRLMNAVMDMYVKCGSLELANSVFER 284

Query: 68  MPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVF 127
           +  R  VSWT MI G A  G + +AR LF+EMPER+V  WN+++ G ++N +  EA  +F
Sbjct: 285 ISNRTAVSWTTMIVGHARLGMMEDARMLFDEMPERDVFPWNALMAGYVQNKQGKEAIALF 344

Query: 128 NSMPIKNVISWNAMIAGYVECCM------MGEAIVLFEEMEERN--VVTWTSMISGYCRA 179
           + M    V      +   +  C       MG  +  + +  + +  V   TS++  Y + 
Sbjct: 345 HEMQKSKVDPNEITMVNLLSACSQLGALEMGMWVHHYIDRHKLHLSVALGTSLVDMYAKC 404

Query: 180 GEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCN 239
           G +++  C+F  +P +N ++WT+MI G A +G   E++  F  M    D G   +  +  
Sbjct: 405 GNIKKAICVFNEIPVQNALTWTSMICGLANHGHADEAIEYFQRM---IDLGLQPDEITFI 461

Query: 240 SMINGYIRFGRLEEAQNLFDTVPVRDEIS-----WTSMIDGYLSVGQVSNAYYLFHNMP- 293
            +++     G +E  +  F  +  +  +      ++ MID     G +  A  L + MP 
Sbjct: 462 GVLSACCHAGLVEAGRQFFSLMHAKYHLERKMKHYSCMIDLLGRAGHLDEAEQLVNAMPM 521

Query: 294 DRDAVAWTAM 303
           D DAV W A+
Sbjct: 522 DPDAVVWGAL 531



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 73/310 (23%), Positives = 139/310 (44%), Gaps = 17/310 (5%)

Query: 230 GNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLF 289
           G + +V   N+ ++ +   G +  A+ LFD  PVRD +SW ++I GY+  G    A  LF
Sbjct: 151 GFSADVFVVNAAMHFWSVRGPMAFARRLFDESPVRDVVSWNTLIGGYVRSGLPREALELF 210

Query: 290 HNMPDR------DAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAG 343
             + +       D V     +SG  Q         L   +   GV       + +     
Sbjct: 211 WRLAEDGNAVRPDEVTVIGAVSGCAQMGDLELGKRLHEFVDNKGVRCTVRLMNAVMDMYV 270

Query: 344 ATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNS 403
              +++L   +     +  S    +    +I  +A+ G++++A  +F  M  RD+  WN+
Sbjct: 271 KCGSLELANSV----FERISNRTAVSWTTMIVGHARLGMMEDARMLFDEMPERDVFPWNA 326

Query: 404 MVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRG-WELFNAMFDV 462
           ++ G+  +    E + +F  M +S   PN +T + +LSACS  G +  G W   +   D 
Sbjct: 327 LMAGYVQNKQGKEAIALFHEMQKSKVDPNEITMVNLLSACSQLGALEMGMW--VHHYIDR 384

Query: 463 YKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFC-EGNAEIA 521
           +K+        S++++  + G IK+A      +P + +   W +++  CG    G+A+ A
Sbjct: 385 HKLHLSVALGTSLVDMYAKCGNIKKAICVFNEIPVQ-NALTWTSMI--CGLANHGHADEA 441

Query: 522 EHAAKRLLEL 531
               +R+++L
Sbjct: 442 IEYFQRMIDL 451



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/128 (27%), Positives = 59/128 (46%), Gaps = 2/128 (1%)

Query: 330 PLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNI 389
           P + TF  L  A         G  +   + K    +D+ + N  +  ++  G +  A  +
Sbjct: 119 PDHLTFPFLIKACARLQYRSYGAAVLGHVQKLGFSADVFVVNAAMHFWSVRGPMAFARRL 178

Query: 390 FSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESG--THPNSVTFLGILSACSHAG 447
           F     RD+VSWN+++ G+   GL  E L++F  + E G    P+ VT +G +S C+  G
Sbjct: 179 FDESPVRDVVSWNTLIGGYVRSGLPREALELFWRLAEDGNAVRPDEVTVIGAVSGCAQMG 238

Query: 448 LVSRGWEL 455
            +  G  L
Sbjct: 239 DLELGKRL 246


>gi|347954534|gb|AEP33767.1| organelle transcript processing 82, partial [Matthiola incana]
          Length = 694

 Score =  294 bits (753), Expect = 9e-77,   Method: Compositional matrix adjust.
 Identities = 198/591 (33%), Positives = 296/591 (50%), Gaps = 92/591 (15%)

Query: 61  ARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEM------PER------------ 102
           A  +F+ + E N++ W  M  G A +     A KL+  M      P+             
Sbjct: 42  AISVFDTIQEPNLLIWNTMFRGHALSSDPVSALKLYLVMISLGLLPDSYTFPFLLKSCAK 101

Query: 103 ---------------------NVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAM 141
                                ++    S++    +NG L +ARKVF+    ++V+S+ A+
Sbjct: 102 SKIRKEGQQIHGHVLKLGFDLDIYVHTSLISMYAQNGRLEDARKVFDISSHRDVVSYTAL 161

Query: 142 IAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRM-----PRKN 196
           IAGYV    +  A  LF+E+  ++VV+W +MISGY   G  +E   LF+ M      R +
Sbjct: 162 IAGYVSRGYIESAQKLFDEIPGKDVVSWNAMISGYVETGNYKEALELFKEMMMMTNVRPD 221

Query: 197 VVSWTAMIGGFAWNGFHKESLLLFIEMKG-ICDNGNNCNVQSCNSMINGYIRFGRLEEAQ 255
             +   ++   A      +S+ L   +   I D+G   N++  N++I+ Y +FG +E A 
Sbjct: 222 ESTMVTVVSACA----QSDSIELGRHVHSWINDHGFASNLKIVNALIDLYSKFGEVETAC 277

Query: 256 NLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVE 315
            LFD +  +D ISW ++I GY                                   L+ E
Sbjct: 278 ELFDGLWNKDVISWNTLIGGY-------------------------------THMNLYKE 306

Query: 316 ATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMK------TESESDLIL 369
           A  LF EM   G  P + T   +  A      ID+GR IH  + K      T   S   L
Sbjct: 307 ALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYINKKLKGVVTNVSS---L 363

Query: 370 ENCLISMYAKCGVIDNAYNIF-SNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESG 428
           +  LI MYAKCG ID A  +F S+M +R L +WN+M+ GF+ HG AN    +F  M  +G
Sbjct: 364 QTSLIDMYAKCGDIDAAQQVFDSSMSNRSLSTWNAMISGFAMHGRANAAFDIFSRMRMNG 423

Query: 429 THPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEA 488
             P+ +TF+G+LSACSH+G++  G  +F +M   Y+I P  EHY  MI+LLG +G  KEA
Sbjct: 424 IEPDDITFVGLLSACSHSGMLDLGRNIFRSMTRGYEITPKLEHYGCMIDLLGHSGLFKEA 483

Query: 489 EEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAA 548
           EE +  +P EPD  IW +LL AC    GN E+ E  AK+L++++P N+ ++V+L NIYAA
Sbjct: 484 EEMINTMPMEPDGVIWCSLLKACKI-HGNLELGESFAKKLIKIEPGNSGSYVLLSNIYAA 542

Query: 549 SGRHVEEHKLRMDMGLKGV-RKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
           +GR  E  K+R  +  KG+ +KVPGCS +  +  +  F+ GDK+  Q  EI
Sbjct: 543 AGRWNEVAKIRALLNDKGMKKKVPGCSSIEIDSVVHEFIIGDKLHPQNREI 593



 Score =  164 bits (416), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 119/390 (30%), Positives = 188/390 (48%), Gaps = 20/390 (5%)

Query: 41  NVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMP 100
           ++  + +++S + QNGRL +AR++F+    R+VVS+TA+I G    G +  A+KLF+E+P
Sbjct: 123 DIYVHTSLISMYAQNGRLEDARKVFDISSHRDVVSYTALIAGYVSRGYIESAQKLFDEIP 182

Query: 101 ERNVVSWNSMVVGLIRNGELNEARKVFNS-MPIKNVISWNAMIAGYVECCMMGEAIVLFE 159
            ++VVSWN+M+ G +  G   EA ++F   M + NV    + +   V  C   ++I L  
Sbjct: 183 GKDVVSWNAMISGYVETGNYKEALELFKEMMMMTNVRPDESTMVTVVSACAQSDSIELGR 242

Query: 160 EMEE--------RNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNG 211
            +           N+    ++I  Y + GEVE    LF  +  K+V+SW  +IGG+    
Sbjct: 243 HVHSWINDHGFASNLKIVNALIDLYSKFGEVETACELFDGLWNKDVISWNTLIGGYTHMN 302

Query: 212 FHKESLLLFIEMKGICDNGNNCNVQS----CNSMINGYIRFGRLEEAQNLFDTVPVRDEI 267
            +KE+LLLF EM    +  N+  + S    C  +  G I  GR            V   +
Sbjct: 303 LYKEALLLFQEMLRSGETPNDVTMLSILPACAHL--GAIDIGRWIHVYINKKLKGVVTNV 360

Query: 268 S--WTSMIDGYLSVGQVSNAYYLFH-NMPDRDAVAWTAMISGLVQNELFVEATYLFMEMR 324
           S   TS+ID Y   G +  A  +F  +M +R    W AMISG   +     A  +F  MR
Sbjct: 361 SSLQTSLIDMYAKCGDIDAAQQVFDSSMSNRSLSTWNAMISGFAMHGRANAAFDIFSRMR 420

Query: 325 AHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMK-TESESDLILENCLISMYAKCGVI 383
            +G+ P + TF  L  A   +  +DLGR I   + +  E    L    C+I +    G+ 
Sbjct: 421 MNGIEPDDITFVGLLSACSHSGMLDLGRNIFRSMTRGYEITPKLEHYGCMIDLLGHSGLF 480

Query: 384 DNAYNIFSNM-VSRDLVSWNSMVMGFSHHG 412
             A  + + M +  D V W S++     HG
Sbjct: 481 KEAEEMINTMPMEPDGVIWCSLLKACKIHG 510


>gi|359476777|ref|XP_002278837.2| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g23330 [Vitis vinifera]
          Length = 1008

 Score =  294 bits (753), Expect = 9e-77,   Method: Compositional matrix adjust.
 Identities = 176/580 (30%), Positives = 298/580 (51%), Gaps = 30/580 (5%)

Query: 46  NAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVV 105
           N +L+ + ++  L +A ++FEE+P+ +V SWT +I G A  G   +   LF +M ++ V 
Sbjct: 325 NHLLNLYAKSQNLEQAHKMFEEIPQTDVFSWTVLISGFARIGLSADVLGLFTKMQDQGVC 384

Query: 106 SWNSMVVGLIR---NGELNEARK--------VFNSMPIKNVISWNAMIAGYVECCMMGEA 154
             N   + ++    +  +N++R         + N + +  V++ N+++  YV+C   G A
Sbjct: 385 P-NQFTLSIVLKSCSSNVNDSRIGKGIHGWILRNGLDLDAVLN-NSILDYYVKCRCFGYA 442

Query: 155 IVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHK 214
             LF  M E++ V+W  M+S Y + G++++   LFR++P K+  SW  MI G   NG  +
Sbjct: 443 EKLFGLMAEKDTVSWNIMMSSYLQIGDMQKSVDLFRQLPGKDAASWNTMIDGLMRNGCER 502

Query: 215 ESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDE-ISWTSMI 273
            +L L  +M       N         + +     G  ++       V V D+     S+I
Sbjct: 503 VALELLYKMVAAGPAFNKLTFSIALVLASSLSVLGLGKQIHTQVLKVGVLDDGFVRNSLI 562

Query: 274 DGYLSVGQVSNAYYLFHNMPDR---------------DAVAWTAMISGLVQNELFVEATY 318
           D Y   G++  A  +F ++P                 ++V+W++M+SG VQN  F +A  
Sbjct: 563 DMYCKCGEMEKASVIFKHLPQESSMMNSEESCDDAVVESVSWSSMVSGYVQNGRFEDALK 622

Query: 319 LFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYA 378
            F  M    V     T + +  A  +   ++LGRQ+H  + K     D+ L + +I MY 
Sbjct: 623 TFSFMICSQVEVDKFTLTSVVSACASAGVLELGRQVHGYIQKIGHGLDVFLGSSIIDMYV 682

Query: 379 KCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLG 438
           KCG +++A+ IF+    R++V W SM+ G + HG   E +++FE M+  G  PN V+F+G
Sbjct: 683 KCGSLNDAWLIFNQAKDRNVVLWTSMISGCALHGQGREAVRLFELMINEGITPNEVSFVG 742

Query: 439 ILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFE 498
           +L+ACSHAGL+  G + F  M +VY I+PG EH+  M++L GRAG++ E +EF+      
Sbjct: 743 VLTACSHAGLLEEGCKYFRLMREVYGIRPGAEHFTCMVDLYGRAGRLNEIKEFIHNNAIS 802

Query: 499 PDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKL 558
               +W + L +C     N E+     K+LLEL+P +A  +++  +I A   R  E  K+
Sbjct: 803 KLSSVWRSFLSSCR-VHKNIEMGIWVCKKLLELEPFDAGPYILFSSICATEHRWEEAAKI 861

Query: 559 RMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
           R  M  +GV+K P  SW+     +  F+ GD+   Q  +I
Sbjct: 862 RSLMQQRGVKKNPSQSWIQLKNQVHSFVMGDRSHPQDTKI 901



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 93/400 (23%), Positives = 184/400 (46%), Gaps = 44/400 (11%)

Query: 41  NVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMP 100
           + V  N++L  +++      A +LF  M E++ VSW  M+      G + ++  LF ++P
Sbjct: 422 DAVLNNSILDYYVKCRCFGYAEKLFGLMAEKDTVSWNIMMSSYLQIGDMQKSVDLFRQLP 481

Query: 101 ERNVVSWNSMVVGLIRNG----ELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIV 156
            ++  SWN+M+ GL+RNG     L    K+  + P  N ++++  +       ++G    
Sbjct: 482 GKDAASWNTMIDGLMRNGCERVALELLYKMVAAGPAFNKLTFSIALVLASSLSVLGLGKQ 541

Query: 157 LFEEMEERNVV----TWTSMISGYCRAGEVEEGYCLFRRMPRKN---------------V 197
           +  ++ +  V+       S+I  YC+ GE+E+   +F+ +P+++                
Sbjct: 542 IHTQVLKVGVLDDGFVRNSLIDMYCKCGEMEKASVIFKHLPQESSMMNSEESCDDAVVES 601

Query: 198 VSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNL 257
           VSW++M+ G+  NG  +++L  F  M  IC      +  +  S+++     G LE  + +
Sbjct: 602 VSWSSMVSGYVQNGRFEDALKTFSFM--ICSQ-VEVDKFTLTSVVSACASAGVLELGRQV 658

Query: 258 FDTVPV----RDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELF 313
              +       D    +S+ID Y+  G +++A+ +F+   DR+ V WT+MISG   +   
Sbjct: 659 HGYIQKIGHGLDVFLGSSIIDMYVKCGSLNDAWLIFNQAKDRNVVLWTSMISGCALHGQG 718

Query: 314 VEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLG-------RQIHCVLMKTESESD 366
            EA  LF  M   G+ P   +F  +  A      ++ G       R+++ +    E  + 
Sbjct: 719 REAVRLFELMINEGITPNEVSFVGVLTACSHAGLLEEGCKYFRLMREVYGIRPGAEHFT- 777

Query: 367 LILENCLISMYAKCGVIDNAYN-IFSNMVSRDLVSWNSMV 405
                C++ +Y + G ++     I +N +S+    W S +
Sbjct: 778 -----CMVDLYGRAGRLNEIKEFIHNNAISKLSSVWRSFL 812



 Score = 75.9 bits (185), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 64/302 (21%), Positives = 119/302 (39%), Gaps = 68/302 (22%)

Query: 231 NNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFH 290
           N C     N ++N Y +   LE+A  +F+ +P  D  SWT +I G+  +G  ++   LF 
Sbjct: 317 NGCVGIRGNHLLNLYAKSQNLEQAHKMFEEIPQTDVFSWTVLISGFARIGLSADVLGLFT 376

Query: 291 NMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANID- 349
            M D+                               GV P   T S++  +  +  N   
Sbjct: 377 KMQDQ-------------------------------GVCPNQFTLSIVLKSCSSNVNDSR 405

Query: 350 LGRQIHCVLMKTESESDLILENCLISMYAKC----------------------------- 380
           +G+ IH  +++   + D +L N ++  Y KC                             
Sbjct: 406 IGKGIHGWILRNGLDLDAVLNNSILDYYVKCRCFGYAEKLFGLMAEKDTVSWNIMMSSYL 465

Query: 381 --GVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLG 438
             G +  + ++F  +  +D  SWN+M+ G   +G     L++   M+ +G   N +TF  
Sbjct: 466 QIGDMQKSVDLFRQLPGKDAASWNTMIDGLMRNGCERVALELLYKMVAAGPAFNKLTFSI 525

Query: 439 ILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYV--SMINLLGRAGKIKEAEEFVLRLP 496
            L   S   ++  G ++   +  V  +  G   +V  S+I++  + G++++A      LP
Sbjct: 526 ALVLASSLSVLGLGKQIHTQVLKVGVLDDG---FVRNSLIDMYCKCGEMEKASVIFKHLP 582

Query: 497 FE 498
            E
Sbjct: 583 QE 584



 Score = 48.1 bits (113), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 46/145 (31%), Positives = 70/145 (48%), Gaps = 11/145 (7%)

Query: 10  LVVHLTSSITK-YSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEM 68
           L V L SSI   Y K G +++A  +F     RNVV + +M+SG   +G+  EA RLFE M
Sbjct: 669 LDVFLGSSIIDMYVKCGSLNDAWLIFNQAKDRNVVLWTSMISGCALHGQGREAVRLFELM 728

Query: 69  PER----NVVSWTAMICGLADAGRVCEARKLFEEMPERNVVS-----WNSMVVGLIRNGE 119
                  N VS+  ++   + AG + E  K F  M E   +      +  MV    R G 
Sbjct: 729 INEGITPNEVSFVGVLTACSHAGLLEEGCKYFRLMREVYGIRPGAEHFTCMVDLYGRAGR 788

Query: 120 LNEARKVFNSMPIKNVIS-WNAMIA 143
           LNE ++  ++  I  + S W + ++
Sbjct: 789 LNEIKEFIHNNAISKLSSVWRSFLS 813


>gi|356553444|ref|XP_003545066.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Glycine max]
          Length = 1033

 Score =  294 bits (752), Expect = 9e-77,   Method: Compositional matrix adjust.
 Identities = 189/639 (29%), Positives = 319/639 (49%), Gaps = 61/639 (9%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMP---ERNVV 74
           ++ +++ G ID AK +F+ M  RN V+ N ++ G  +  +  EA ++F+EM    E N  
Sbjct: 292 VSGFARYGLIDSAKMIFEQMDDRNAVTMNGLMVGLARQHQGEEAAKIFKEMKDLVEINAS 351

Query: 75  SWTAMICGLADAGRVCE----------------------------------------ARK 94
           S+  ++    +   + E                                        AR 
Sbjct: 352 SYAVLLSAFTEFSNLKEGKRKGQEVHAYLIRNALVDVWILIGNALVNLYAKCNAIDNARS 411

Query: 95  LFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEA 154
           +F+ MP ++ VSWNS++ GL  N    EA   F++M    ++     +   +  C     
Sbjct: 412 IFQLMPSKDTVSWNSIISGLDHNERFEEAVACFHTMRRNGMVPSKFSVISTLSSCASLGW 471

Query: 155 IVLFEEME--------ERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGG 206
           I+L +++         + +V    ++++ Y     +EE   +F  MP  + VSW + IG 
Sbjct: 472 IMLGQQIHGEGIKCGLDLDVSVSNALLTLYAETDCMEEYQKVFFLMPEYDQVSWNSFIGA 531

Query: 207 FAWNGFHK-ESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRF--GRLEEAQNLFDTVPV 263
            A +     +++  F+EM       N     +  S ++       GR   A  L  +V  
Sbjct: 532 LATSEASVLQAIKYFLEMMQAGWKPNRVTFINILSAVSSLSLLELGRQIHALILKHSVAD 591

Query: 264 RDEISWTSMIDGYLSVGQVSNAYYLFHNMPDR-DAVAWTAMISGLVQNELFVEATYLFME 322
            + I   +++  Y    Q+ +   +F  M +R D V+W AMISG + N +  +A  L   
Sbjct: 592 DNAIE-NTLLAFYGKCEQMEDCEIIFSRMSERRDEVSWNAMISGYIHNGILHKAMGLVWL 650

Query: 323 MRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGV 382
           M   G    + T + +  A  + A ++ G ++H   ++   E+++++ + L+ MYAKCG 
Sbjct: 651 MMQKGQRLDDFTLATVLSACASVATLERGMEVHACAIRACLEAEVVVGSALVDMYAKCGK 710

Query: 383 IDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSA 442
           ID A   F  M  R++ SWNSM+ G++ HG   + LK+F  M + G  P+ VTF+G+LSA
Sbjct: 711 IDYASRFFELMPVRNIYSWNSMISGYARHGHGGKALKLFTQMKQHGQLPDHVTFVGVLSA 770

Query: 443 CSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHR 502
           CSH GLV  G+E F +M +VY++ P  EH+  M++LLGRAG +K+ EEF+  +P  P+  
Sbjct: 771 CSHVGLVDEGFEHFKSMGEVYELAPRIEHFSCMVDLLGRAGDVKKLEEFIKTMPMNPNAL 830

Query: 503 IWGALLGACGFCEGNA---EIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLR 559
           IW  +LGAC  C  N+   E+   AAK L+EL+PLNA  +V+L N++AA G+  +  + R
Sbjct: 831 IWRTILGAC--CRANSRNTELGRRAAKMLIELEPLNAVNYVLLSNMHAAGGKWEDVEEAR 888

Query: 560 MDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
           + M    V+K  GCSW+    G+ +F++GD+   +  +I
Sbjct: 889 LAMRNAEVKKEAGCSWVTMKDGVHVFVAGDQTHPEKEKI 927



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 138/558 (24%), Positives = 256/558 (45%), Gaps = 79/558 (14%)

Query: 21  YSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEE------MPERNVV 74
           + + G +  A+ LF  MPQ+N+VS++ ++SG+ QNG   EA  LF        +P    +
Sbjct: 84  FVRAGNLVSAQKLFDEMPQKNLVSWSCLVSGYAQNGMPDEACMLFRGIISAGLLPNHYAI 143

Query: 75  SWTAMIC---------------GLAD---------------------AGRVCEARKLFEE 98
                 C               GL                       +  + +AR++FEE
Sbjct: 144 GSALRACQELGPNMLKLGMEIHGLISKSPYASDMVLSNVLMSMYSHCSASIDDARRVFEE 203

Query: 99  MPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIK--------NVISWNAMIAGYVECCM 150
           +  +   SWNS++    R G+   A K+F+SM  +        N  ++ +++   V C +
Sbjct: 204 IKMKTSASWNSIISVYCRRGDAISAFKLFSSMQREATELNCRPNEYTFCSLVT--VACSL 261

Query: 151 MGEAIVLFEEMEER--------NVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTA 202
           +   + L E+M  R        ++   ++++SG+ R G ++    +F +M  +N V+   
Sbjct: 262 VDCGLTLLEQMLARIEKSSFVKDLYVGSALVSGFARYGLIDSAKMIFEQMDDRNAVTMNG 321

Query: 203 MIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVP 262
           ++ G A     +E+  +F EMK + +     N  S   +++ +  F  L+E +     V 
Sbjct: 322 LMVGLARQHQGEEAAKIFKEMKDLVE----INASSYAVLLSAFTEFSNLKEGKRKGQEVH 377

Query: 263 ---VRDEI--SW----TSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELF 313
              +R+ +   W     ++++ Y     + NA  +F  MP +D V+W ++ISGL  NE F
Sbjct: 378 AYLIRNALVDVWILIGNALVNLYAKCNAIDNARSIFQLMPSKDTVSWNSIISGLDHNERF 437

Query: 314 VEATYLFMEMRAHGVPPLNATFSVL--FGAAGATANIDLGRQIHCVLMKTESESDLILEN 371
            EA   F  MR +G+ P  + FSV+    +  +   I LG+QIH   +K   + D+ + N
Sbjct: 438 EEAVACFHTMRRNGMVP--SKFSVISTLSSCASLGWIMLGQQIHGEGIKCGLDLDVSVSN 495

Query: 372 CLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGF-SHHGLANETLKVFESMLESGTH 430
            L+++YA+   ++    +F  M   D VSWNS +    +      + +K F  M+++G  
Sbjct: 496 ALLTLYAETDCMEEYQKVFFLMPEYDQVSWNSFIGALATSEASVLQAIKYFLEMMQAGWK 555

Query: 431 PNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEE 490
           PN VTF+ ILSA S   L+  G ++ +A+   + +        +++   G+  ++++ E 
Sbjct: 556 PNRVTFINILSAVSSLSLLELGRQI-HALILKHSVADDNAIENTLLAFYGKCEQMEDCEI 614

Query: 491 FVLRLPFEPDHRIWGALL 508
              R+    D   W A++
Sbjct: 615 IFSRMSERRDEVSWNAMI 632



 Score =  158 bits (399), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 131/537 (24%), Positives = 245/537 (45%), Gaps = 75/537 (13%)

Query: 27  IDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPE---------------- 70
           ID+A+ +F+ +  +   S+N+++S + + G    A +LF  M                  
Sbjct: 194 IDDARRVFEEIKMKTSASWNSIISVYCRRGDAISAFKLFSSMQREATELNCRPNEYTFCS 253

Query: 71  -----------------------------RNVVSWTAMICGLADAGRVCEARKLFEEMPE 101
                                        +++   +A++ G A  G +  A+ +FE+M +
Sbjct: 254 LVTVACSLVDCGLTLLEQMLARIEKSSFVKDLYVGSALVSGFARYGLIDSAKMIFEQMDD 313

Query: 102 RNVVSWNSMVVGLIRNGELNEARKVFNSMPIK---NVISWNAMIAGYVECCMMGEAIVLF 158
           RN V+ N ++VGL R  +  EA K+F  M      N  S+  +++ + E   + E     
Sbjct: 314 RNAVTMNGLMVGLARQHQGEEAAKIFKEMKDLVEINASSYAVLLSAFTEFSNLKEGKRKG 373

Query: 159 EEMEE---RN--VVTW----TSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAW 209
           +E+     RN  V  W     ++++ Y +   ++    +F+ MP K+ VSW ++I G   
Sbjct: 374 QEVHAYLIRNALVDVWILIGNALVNLYAKCNAIDNARSIFQLMPSKDTVSWNSIISGLDH 433

Query: 210 NGFHKESLLLFIEMK--GICDNGNNC--NVQSCNSMINGYIRFGRLEEAQNLFDTVPVRD 265
           N   +E++  F  M+  G+  +  +    + SC S+  G+I  G+    + +   + +  
Sbjct: 434 NERFEEAVACFHTMRRNGMVPSKFSVISTLSSCASL--GWIMLGQQIHGEGIKCGLDLDV 491

Query: 266 EISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFV-EATYLFMEMR 324
            +S  +++  Y     +     +F  MP+ D V+W + I  L  +E  V +A   F+EM 
Sbjct: 492 SVS-NALLTLYAETDCMEEYQKVFFLMPEYDQVSWNSFIGALATSEASVLQAIKYFLEMM 550

Query: 325 AHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVID 384
             G  P   TF  +  A  + + ++LGRQIH +++K     D  +EN L++ Y KC  ++
Sbjct: 551 QAGWKPNRVTFINILSAVSSLSLLELGRQIHALILKHSVADDNAIENTLLAFYGKCEQME 610

Query: 385 NAYNIFSNMVS-RDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSAC 443
           +   IFS M   RD VSWN+M+ G+ H+G+ ++ + +   M++ G   +  T   +LSAC
Sbjct: 611 DCEIIFSRMSERRDEVSWNAMISGYIHNGILHKAMGLVWLMMQKGQRLDDFTLATVLSAC 670

Query: 444 SHAGLVSRGWELFNAMFDVYKIQPGPEHYV----SMINLLGRAGKIKEAEEFVLRLP 496
           +    + RG E+         I+   E  V    +++++  + GKI  A  F   +P
Sbjct: 671 ASVATLERGMEVHAC-----AIRACLEAEVVVGSALVDMYAKCGKIDYASRFFELMP 722



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 114/528 (21%), Positives = 209/528 (39%), Gaps = 139/528 (26%)

Query: 145 YVECCMMGEAIVLFEEMEERNV---VTW-TSMISGYCRAGEVEEGYCLFRRMPRKNVVSW 200
           Y + C + +A  L  ++ +  +   V W  ++++ + RAG +     LF  MP+KN+VSW
Sbjct: 49  YRDSCTVEDAHQLHLQIYKTGLTSDVFWCNTLVNIFVRAGNLVSAQKLFDEMPQKNLVSW 108

Query: 201 TAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCN-------VQSCNSMINGYIRFG---- 249
           + ++ G+A NG   E+ +LF   +GI   G   N       +++C  +    ++ G    
Sbjct: 109 SCLVSGYAQNGMPDEACMLF---RGIISAGLLPNHYAIGSALRACQELGPNMLKLGMEIH 165

Query: 250 ---------------------------RLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQV 282
                                       +++A+ +F+ + ++   SW S+I  Y   G  
Sbjct: 166 GLISKSPYASDMVLSNVLMSMYSHCSASIDDARRVFEEIKMKTSASWNSIISVYCRRGDA 225

Query: 283 SNAYYLFHNM----------PD-----------------------------------RDA 297
            +A+ LF +M          P+                                   +D 
Sbjct: 226 ISAFKLFSSMQREATELNCRPNEYTFCSLVTVACSLVDCGLTLLEQMLARIEKSSFVKDL 285

Query: 298 VAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLN------------------------- 332
              +A++SG  +  L   A  +F +M       +N                         
Sbjct: 286 YVGSALVSGFARYGLIDSAKMIFEQMDDRNAVTMNGLMVGLARQHQGEEAAKIFKEMKDL 345

Query: 333 -----ATFSVLFGAAGATANIDLGR----QIHCVLMKTE-SESDLILENCLISMYAKCGV 382
                ++++VL  A    +N+  G+    ++H  L++    +  +++ N L+++YAKC  
Sbjct: 346 VEINASSYAVLLSAFTEFSNLKEGKRKGQEVHAYLIRNALVDVWILIGNALVNLYAKCNA 405

Query: 383 IDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSA 442
           IDNA +IF  M S+D VSWNS++ G  H+    E +  F +M  +G  P+  + +  LS+
Sbjct: 406 IDNARSIFQLMPSKDTVSWNSIISGLDHNERFEEAVACFHTMRRNGMVPSKFSVISTLSS 465

Query: 443 CSHAGLVSRGWELFNAMFDVYKIQPGPEHYVS----MINLLGRAGKIKEAEEFVLRLPFE 498
           C+     S GW +         I+ G +  VS    ++ L      ++E ++    +P E
Sbjct: 466 CA-----SLGWIMLGQQIHGEGIKCGLDLDVSVSNALLTLYAETDCMEEYQKVFFLMP-E 519

Query: 499 PDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLN-APAHVVLCNI 545
            D   W + +GA    E +      A K  LE+      P  V   NI
Sbjct: 520 YDQVSWNSFIGALATSEAS---VLQAIKYFLEMMQAGWKPNRVTFINI 564



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 61/243 (25%), Positives = 112/243 (46%), Gaps = 30/243 (12%)

Query: 11  VVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPE 70
           VV  ++ +  Y+K G ID A   F+LMP RN+ S+N+M+SG+ ++G   +A +LF +M +
Sbjct: 695 VVVGSALVDMYAKCGKIDYASRFFELMPVRNIYSWNSMISGYARHGHGGKALKLFTQMKQ 754

Query: 71  R----NVVSWTAMICGLADAGRVCEARKLFEEMPE-----RNVVSWNSMVVGLIRNGELN 121
                + V++  ++   +  G V E  + F+ M E       +  ++ MV  L R G++ 
Sbjct: 755 HGQLPDHVTFVGVLSACSHVGLVDEGFEHFKSMGEVYELAPRIEHFSCMVDLLGRAGDVK 814

Query: 122 EARKVFNSMPIK-NVISWNAMIAGYVECCMMG--------EAIVLFEEMEERNVVTWTSM 172
           +  +   +MP+  N + W  ++     CC            A  +  E+E  N V +  +
Sbjct: 815 KLEEFIKTMPMNPNALIWRTILGA---CCRANSRNTELGRRAAKMLIELEPLNAVNYVLL 871

Query: 173 ISGYCRAG---EVEEGYCLFR--RMPRKNVVSWTAMIGG----FAWNGFHKESLLLFIEM 223
            + +   G   +VEE     R   + ++   SW  M  G     A +  H E   ++ ++
Sbjct: 872 SNMHAAGGKWEDVEEARLAMRNAEVKKEAGCSWVTMKDGVHVFVAGDQTHPEKEKIYDKL 931

Query: 224 KGI 226
           K I
Sbjct: 932 KEI 934



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 32/119 (26%), Positives = 61/119 (51%), Gaps = 4/119 (3%)

Query: 329 PPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYN 388
           PPLN  ++        +  ++   Q+H  + KT   SD+   N L++++ + G + +A  
Sbjct: 40  PPLNLDYNRYRD----SCTVEDAHQLHLQIYKTGLTSDVFWCNTLVNIFVRAGNLVSAQK 95

Query: 389 IFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAG 447
           +F  M  ++LVSW+ +V G++ +G+ +E   +F  ++ +G  PN       L AC   G
Sbjct: 96  LFDEMPQKNLVSWSCLVSGYAQNGMPDEACMLFRGIISAGLLPNHYAIGSALRACQELG 154


>gi|359482004|ref|XP_002276764.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like [Vitis vinifera]
          Length = 681

 Score =  294 bits (752), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 175/544 (32%), Positives = 284/544 (52%), Gaps = 48/544 (8%)

Query: 46  NAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLF------EEM 99
           N +++ + + G L  A +LF+ MP+RN+VSWTAMI GL+   +  EA + F       E+
Sbjct: 44  NHLVNMYSKCGELDHALKLFDTMPQRNLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEV 103

Query: 100 PERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAG-----YVECCMMGEA 154
           P +   +++S +      G + E  K  + + +K  I     +       Y +C  M +A
Sbjct: 104 PTQ--FAFSSAIRACASLGSI-EMGKQMHCLALKFGIGSELFVGSNLEDMYSKCGAMFDA 160

Query: 155 IVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNV-VSWTAMIGGFAWNGFH 213
             +FEEM  ++ V+WT+MI GY + GE EE    F++M  + V +    +       G  
Sbjct: 161 CKVFEEMPCKDEVSWTAMIDGYSKIGEFEEALLAFKKMIDEEVTIDQHVLCSTLGACGAL 220

Query: 214 KESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFD-TVPVRDEISWTSM 272
           K           +   G   ++   N++ + Y + G +E A N+F      R+ +S+T +
Sbjct: 221 KACKFGRSVHSSVVKLGFESDIFVGNALTDMYSKAGDMESASNVFGIDSECRNVVSYTCL 280

Query: 273 IDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLN 332
           IDGY+   Q+                                +   +F+E+R  G+ P  
Sbjct: 281 IDGYVETEQIE-------------------------------KGLSVFVELRRQGIEPNE 309

Query: 333 ATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSN 392
            TFS L  A    A ++ G Q+H  +MK   + D  + + L+ MY KCG+++ A   F  
Sbjct: 310 FTFSSLIKACANQAALEQGTQLHAQVMKINFDEDPFVSSILVDMYGKCGLLEQAIQAFDE 369

Query: 393 MVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRG 452
           +     ++WNS+V  F  HGL  + +K+FE M++ G  PN++TF+ +L+ CSHAGLV  G
Sbjct: 370 IGDPTEIAWNSLVSVFGQHGLGKDAIKIFERMVDRGVKPNAITFISLLTGCSHAGLVEEG 429

Query: 453 WELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACG 512
            + F +M   Y + PG EHY  +I+LLGRAG++KEA+EF+ R+PFEP+   W + LGAC 
Sbjct: 430 LDYFYSMDKTYGVVPGEEHYSCVIDLLGRAGRLKEAKEFINRMPFEPNAFGWCSFLGACR 489

Query: 513 FCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPG 572
              G+ E+ + AA++L++L+P N+ A V+L NIYA   +  +   +RM M    V+K+PG
Sbjct: 490 I-HGDKEMGKLAAEKLVKLEPKNSGALVLLSNIYANERQWEDVRSVRMRMRDGNVKKLPG 548

Query: 573 CSWL 576
            SW+
Sbjct: 549 YSWV 552



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 104/384 (27%), Positives = 166/384 (43%), Gaps = 64/384 (16%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLF------EEMPER 71
           +  YSK G +D A  LF  MPQRN+VS+ AM+SG  QN + SEA R F       E+P +
Sbjct: 47  VNMYSKCGELDHALKLFDTMPQRNLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQ 106

Query: 72  NVVSWTAMICG---------------------------------LADAGRVCEARKLFEE 98
              S     C                                   +  G + +A K+FEE
Sbjct: 107 FAFSSAIRACASLGSIEMGKQMHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEE 166

Query: 99  MPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNV-ISWNAMIA-----GYVECCMMG 152
           MP ++ VSW +M+ G  + GE  EA   F  M  + V I  + + +     G ++ C  G
Sbjct: 167 MPCKDEVSWTAMIDGYSKIGEFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFG 226

Query: 153 EAI--VLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPR-KNVVSWTAMIGGFAW 209
            ++   + +   E ++    ++   Y +AG++E    +F      +NVVS+T +I G+  
Sbjct: 227 RSVHSSVVKLGFESDIFVGNALTDMYSKAGDMESASNVFGIDSECRNVVSYTCLIDGYVE 286

Query: 210 NGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNL--------FDTV 261
               ++ L +F+E++     G   N  + +S+I        LE+   L        FD  
Sbjct: 287 TEQIEKGLSVFVELR---RQGIEPNEFTFSSLIKACANQAALEQGTQLHAQVMKINFDED 343

Query: 262 PVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFM 321
           P    I    ++D Y   G +  A   F  + D   +AW +++S   Q+ L  +A  +F 
Sbjct: 344 PFVSSI----LVDMYGKCGLLEQAIQAFDEIGDPTEIAWNSLVSVFGQHGLGKDAIKIFE 399

Query: 322 EMRAHGVPPLNATF-SVLFGAAGA 344
            M   GV P   TF S+L G + A
Sbjct: 400 RMVDRGVKPNAITFISLLTGCSHA 423



 Score = 75.5 bits (184), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 56/201 (27%), Positives = 89/201 (44%), Gaps = 33/201 (16%)

Query: 345 TANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSM 404
           T  +  G+Q+H +L+         L N L++MY+KCG +D+A  +F  M  R+LVSW +M
Sbjct: 18  TKRLRRGKQLHALLICAGYTPCTFLTNHLVNMYSKCGELDHALKLFDTMPQRNLVSWTAM 77

Query: 405 VMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGW----------- 453
           + G S +   +E ++ F  M   G  P    F   + AC+  G +  G            
Sbjct: 78  ISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIEMGKQMHCLALKFGI 137

Query: 454 --ELF------------NAMFDVYKI---QPGPEH--YVSMINLLGRAGKIKEAEEFVLR 494
             ELF             AMFD  K+    P  +   + +MI+   + G+ +EA     +
Sbjct: 138 GSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYSKIGEFEEALLAFKK 197

Query: 495 LPFEP---DHRIWGALLGACG 512
           +  E    D  +  + LGACG
Sbjct: 198 MIDEEVTIDQHVLCSTLGACG 218



 Score = 65.9 bits (159), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 48/187 (25%), Positives = 101/187 (54%), Gaps = 13/187 (6%)

Query: 21  YSKRGFIDEAKALFQLMPQ-RNVVSYNAMLSGFLQNGRLSEARRLFEEMP----ERNVVS 75
           YSK G ++ A  +F +  + RNVVSY  ++ G+++  ++ +   +F E+     E N  +
Sbjct: 252 YSKAGDMESASNVFGIDSECRNVVSYTCLIDGYVETEQIEKGLSVFVELRRQGIEPNEFT 311

Query: 76  WTAMICGLADAGRVCEARKLFEEMPERNVVS---WNSMVVGLI-RNGELNEARKVFNSMP 131
           ++++I   A+   + +  +L  ++ + N       +S++V +  + G L +A + F+ + 
Sbjct: 312 FSSLIKACANQAALEQGTQLHAQVMKINFDEDPFVSSILVDMYGKCGLLEQAIQAFDEIG 371

Query: 132 IKNVISWNAMIAGYVECCMMGEAIVLFEEMEER----NVVTWTSMISGYCRAGEVEEGYC 187
               I+WN++++ + +  +  +AI +FE M +R    N +T+ S+++G   AG VEEG  
Sbjct: 372 DPTEIAWNSLVSVFGQHGLGKDAIKIFERMVDRGVKPNAITFISLLTGCSHAGLVEEGLD 431

Query: 188 LFRRMPR 194
            F  M +
Sbjct: 432 YFYSMDK 438



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 66/319 (20%), Positives = 129/319 (40%), Gaps = 63/319 (19%)

Query: 12  VHLTSSITKYSKRGFIDEAKALFQLMP--------------------------------- 38
           V  T+ I  YSK G  +EA   F+ M                                  
Sbjct: 173 VSWTAMIDGYSKIGEFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSVHSS 232

Query: 39  ------QRNVVSYNAMLSGFLQNGRLSEARRLFEEMPE-RNVVSWTAMICGLADAGRVCE 91
                 + ++   NA+   + + G +  A  +F    E RNVVS+T +I G  +  ++ +
Sbjct: 233 VVKLGFESDIFVGNALTDMYSKAGDMESASNVFGIDSECRNVVSYTCLIDGYVETEQIEK 292

Query: 92  ARKLFEEMP----ERNVVSWNSMVVGLIRNGELNEARKV--------FNSMPIKNVISWN 139
              +F E+     E N  +++S++        L +  ++        F+  P  + I   
Sbjct: 293 GLSVFVELRRQGIEPNEFTFSSLIKACANQAALEQGTQLHAQVMKINFDEDPFVSSI--- 349

Query: 140 AMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRM----PRK 195
            ++  Y +C ++ +AI  F+E+ +   + W S++S + + G  ++   +F RM     + 
Sbjct: 350 -LVDMYGKCGLLEQAIQAFDEIGDPTEIAWNSLVSVFGQHGLGKDAIKIFERMVDRGVKP 408

Query: 196 NVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQ 255
           N +++ +++ G +  G  +E L  F  M             SC  +I+   R GRL+EA+
Sbjct: 409 NAITFISLLTGCSHAGLVEEGLDYFYSMDKTYGVVPGEEHYSC--VIDLLGRAGRLKEAK 466

Query: 256 NLFDTVPVR-DEISWTSMI 273
              + +P   +   W S +
Sbjct: 467 EFINRMPFEPNAFGWCSFL 485



 Score = 52.8 bits (125), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 37/137 (27%), Positives = 68/137 (49%), Gaps = 10/137 (7%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPER----NV 73
           +  Y K G +++A   F  +     +++N+++S F Q+G   +A ++FE M +R    N 
Sbjct: 351 VDMYGKCGLLEQAIQAFDEIGDPTEIAWNSLVSVFGQHGLGKDAIKIFERMVDRGVKPNA 410

Query: 74  VSWTAMICGLADAGRVCEARKLFEEMPERNVV----SWNSMVVGLI-RNGELNEARKVFN 128
           +++ +++ G + AG V E    F  M +   V       S V+ L+ R G L EA++  N
Sbjct: 411 ITFISLLTGCSHAGLVEEGLDYFYSMDKTYGVVPGEEHYSCVIDLLGRAGRLKEAKEFIN 470

Query: 129 SMPIK-NVISWNAMIAG 144
            MP + N   W + +  
Sbjct: 471 RMPFEPNAFGWCSFLGA 487


>gi|357461615|ref|XP_003601089.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355490137|gb|AES71340.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 745

 Score =  294 bits (752), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 171/544 (31%), Positives = 295/544 (54%), Gaps = 22/544 (4%)

Query: 33  LFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEA 92
           +FQ     ++V  NA+L  +++ G L +A+R+F E+P +N  SW  +I G A  G + +A
Sbjct: 131 IFQAKLDVDIVLMNALLDMYVKCGSLRDAQRVFCEIPCKNATSWNTLILGYAKQGLIDDA 190

Query: 93  RKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMG 152
            KLF++MPE ++VSWNS++ GL+ N   + A +  + M  K +          ++ C   
Sbjct: 191 MKLFDKMPEPDIVSWNSIIAGLVDNAS-SRALRFVSMMHGKGLKMDEFTFPSVLKACGCS 249

Query: 153 EAIVLFEEME--------ERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVS----- 199
           + ++L  E+         E +    +++I  Y     + E   +F +  R + VS     
Sbjct: 250 DELMLGREIHCYIIKSGFESSCYCISALIDMYSSCKLLSEATKIFDQYFRNSSVSESLAL 309

Query: 200 WTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFD 259
           W +M+ G   NG + E+L +   M     +G   +  + + ++   + F  L  A  +  
Sbjct: 310 WNSMLSGHVVNGDYVEALSMISHMH---RSGVRFDFYTFSIVLKICMNFDNLSLASQVHG 366

Query: 260 TVPVR----DEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVE 315
            V       D +  + +ID Y   G ++NA  LF  +PD+D VAW+++I+G  +      
Sbjct: 367 FVITSGYELDCVVGSILIDIYAKQGSINNALRLFERLPDKDVVAWSSLITGCARFGSDKL 426

Query: 316 ATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLIS 375
           A  LFM+M   G+   +   S++  A  + A+   G+Q+H + +K   ES+ ++   LI 
Sbjct: 427 AFSLFMDMIHLGLQIDHFVISIVLKACSSLASHQHGKQVHSLCLKKGYESEGVVTTALID 486

Query: 376 MYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVT 435
           MYAKCG I++A ++F  +   D +SW S+++G + +G A E + +   M+ESGT PN +T
Sbjct: 487 MYAKCGDIEDALSLFGCLSEIDTMSWTSIIVGCAQNGRAEEAISLLHKMIESGTKPNKIT 546

Query: 436 FLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRL 495
            LG+L+AC H+GLV   W++FN++   + + P PEHY  M+++LG+AG+ +EA + +  +
Sbjct: 547 ILGVLTACRHSGLVEEAWDVFNSIETNHGLIPCPEHYNCMVDILGQAGRFEEAVKLISEM 606

Query: 496 PFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEE 555
           PF+PD  IW +LLGACG  + N ++A   A+ LL   P +   +++L N+YAA G     
Sbjct: 607 PFKPDKTIWSSLLGACGTYK-NRDLANIVAEHLLATSPEDVSVYIMLSNVYAALGMWDSV 665

Query: 556 HKLR 559
            K+R
Sbjct: 666 SKVR 669



 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 133/517 (25%), Positives = 236/517 (45%), Gaps = 53/517 (10%)

Query: 46  NAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVV 105
           N M+S + +   + +AR +F+EMP RN+VSWT M+  L ++    EA  L+ EM E  + 
Sbjct: 42  NNMISVYSKCSSIIDARNMFDEMPHRNIVSWTTMVSVLTNSSMPHEALSLYNEMIESKIE 101

Query: 106 SWNSMV-------VGLIRNGELNEA--RKVFNSMPIKNVISWNAMIAGYVECCMMGEAIV 156
             N  +        GL+RN EL +     +F +    +++  NA++  YV+C  + +A  
Sbjct: 102 QPNQFLYSAVLKACGLVRNVELGKMVHYHIFQAKLDVDIVLMNALLDMYVKCGSLRDAQR 161

Query: 157 LFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKES 216
           +F E+  +N  +W ++I GY + G +++   LF +MP  ++VSW ++I G   N   +  
Sbjct: 162 VFCEIPCKNATSWNTLILGYAKQGLIDDAMKLFDKMPEPDIVSWNSIIAGLVDNASSRA- 220

Query: 217 LLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISW------- 269
            L F+ M     +G    +            F  + +A    D + +  EI         
Sbjct: 221 -LRFVSMM----HGKGLKMDE--------FTFPSVLKACGCSDELMLGREIHCYIIKSGF 267

Query: 270 -------TSMIDGYLSVGQVSNAYYLFHNMPDRDAVA-----WTAMISGLVQNELFVEAT 317
                  +++ID Y S   +S A  +F       +V+     W +M+SG V N  +VEA 
Sbjct: 268 ESSCYCISALIDMYSSCKLLSEATKIFDQYFRNSSVSESLALWNSMLSGHVVNGDYVEAL 327

Query: 318 YLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMY 377
            +   M   GV     TFS++        N+ L  Q+H  ++ +  E D ++ + LI +Y
Sbjct: 328 SMISHMHRSGVRFDFYTFSIVLKICMNFDNLSLASQVHGFVITSGYELDCVVGSILIDIY 387

Query: 378 AKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFL 437
           AK G I+NA  +F  +  +D+V+W+S++ G +  G       +F  M+  G   +     
Sbjct: 388 AKQGSINNALRLFERLPDKDVVAWSSLITGCARFGSDKLAFSLFMDMIHLGLQIDHFVIS 447

Query: 438 GILSACSHAGLVSRGWELFNAMFDVYKIQPGPEH----YVSMINLLGRAGKIKEAEEFVL 493
            +L ACS       G ++ +       ++ G E       ++I++  + G I++A     
Sbjct: 448 IVLKACSSLASHQHGKQVHSLC-----LKKGYESEGVVTTALIDMYAKCGDIEDALSLFG 502

Query: 494 RLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLE 530
            L  E D   W +++  C    G AE A     +++E
Sbjct: 503 CLS-EIDTMSWTSIIVGCAQ-NGRAEEAISLLHKMIE 537



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 119/488 (24%), Positives = 214/488 (43%), Gaps = 76/488 (15%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNV---- 73
           I  Y+K+G ID+A  LF  MP+ ++VS+N++++G + N   S A R    M  + +    
Sbjct: 178 ILGYAKQGLIDDAMKLFDKMPEPDIVSWNSIIAGLVDNAS-SRALRFVSMMHGKGLKMDE 236

Query: 74  VSWTAMI--CGLADA---GR------------------------------VCEARKLFEE 98
            ++ +++  CG +D    GR                              + EA K+F++
Sbjct: 237 FTFPSVLKACGCSDELMLGREIHCYIIKSGFESSCYCISALIDMYSSCKLLSEATKIFDQ 296

Query: 99  MPERNVVS-----WNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGE 153
               + VS     WNSM+ G + NG+  EA  + + M    V       +  ++ CM  +
Sbjct: 297 YFRNSSVSESLALWNSMLSGHVVNGDYVEALSMISHMHRSGVRFDFYTFSIVLKICMNFD 356

Query: 154 AIVLFEEME--------ERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIG 205
            + L  ++         E + V  + +I  Y + G +     LF R+P K+VV+W+++I 
Sbjct: 357 NLSLASQVHGFVITSGYELDCVVGSILIDIYAKQGSINNALRLFERLPDKDVVAWSSLIT 416

Query: 206 GFAWNGFHKESLLLFIEMKGICDNGNNCNV----QSCNSMINGYIRFGRLEEAQNLFDTV 261
           G A  G  K +  LF++M  +    ++  +    ++C+S+ +   + G+   +  L    
Sbjct: 417 GCARFGSDKLAFSLFMDMIHLGLQIDHFVISIVLKACSSLASH--QHGKQVHSLCLKKGY 474

Query: 262 PVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFM 321
                ++ T++ID Y   G + +A  LF  + + D ++WT++I G  QN    EA  L  
Sbjct: 475 ESEGVVT-TALIDMYAKCGDIEDALSLFGCLSEIDTMSWTSIIVGCAQNGRAEEAISLLH 533

Query: 322 EMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLI----LENCLISMY 377
           +M   G  P   T   + G   A  +  L  +   V    E+   LI      NC++ + 
Sbjct: 534 KMIESGTKPNKIT---ILGVLTACRHSGLVEEAWDVFNSIETNHGLIPCPEHYNCMVDIL 590

Query: 378 AKCGVIDNAYNIFSNMVSR-DLVSWNSMVMG---FSHHGLANETLKVFESMLESGTHPNS 433
            + G  + A  + S M  + D   W+S++     + +  LAN    V E +L   T P  
Sbjct: 591 GQAGRFEEAVKLISEMPFKPDKTIWSSLLGACGTYKNRDLAN---IVAEHLL--ATSPED 645

Query: 434 VTFLGILS 441
           V+   +LS
Sbjct: 646 VSVYIMLS 653



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 39/155 (25%), Positives = 79/155 (50%), Gaps = 10/155 (6%)

Query: 347 NIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVM 406
           +I   + +H  ++K+   + + + N +IS+Y+KC  I +A N+F  M  R++VSW +MV 
Sbjct: 18  SIKNAKSLHSHIIKSGFCNHIFILNNMISVYSKCSSIIDARNMFDEMPHRNIVSWTTMVS 77

Query: 407 GFSHHGLANETLKVFESMLESGT-HPNSVTFLGILSACSHAGLVSRG----WELFNAMFD 461
             ++  + +E L ++  M+ES    PN   +  +L AC     V  G    + +F A  D
Sbjct: 78  VLTNSSMPHEALSLYNEMIESKIEQPNQFLYSAVLKACGLVRNVELGKMVHYHIFQAKLD 137

Query: 462 VYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLP 496
           V  +        +++++  + G +++A+     +P
Sbjct: 138 VDIVLMN-----ALLDMYVKCGSLRDAQRVFCEIP 167



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 38/140 (27%), Positives = 70/140 (50%), Gaps = 10/140 (7%)

Query: 15  TSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPER--- 71
           T+ I  Y+K G I++A +LF  + + + +S+ +++ G  QNGR  EA  L  +M E    
Sbjct: 482 TALIDMYAKCGDIEDALSLFGCLSEIDTMSWTSIIVGCAQNGRAEEAISLLHKMIESGTK 541

Query: 72  -NVVSWTAMICGLADAGRVCEARKLFEEMPERNVV-----SWNSMVVGLIRNGELNEARK 125
            N ++   ++     +G V EA  +F  +   + +      +N MV  L + G   EA K
Sbjct: 542 PNKITILGVLTACRHSGLVEEAWDVFNSIETNHGLIPCPEHYNCMVDILGQAGRFEEAVK 601

Query: 126 VFNSMPIK-NVISWNAMIAG 144
           + + MP K +   W++++  
Sbjct: 602 LISEMPFKPDKTIWSSLLGA 621


>gi|297838665|ref|XP_002887214.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297333055|gb|EFH63473.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 740

 Score =  294 bits (752), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 186/578 (32%), Positives = 304/578 (52%), Gaps = 26/578 (4%)

Query: 30  AKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRV 89
           A+ +F  +PQ N+ S+N +L  + ++G LSE  R FE++P+R+ V+W  +I G + +G V
Sbjct: 57  ARRVFDGIPQPNLFSWNNLLLAYSKSGHLSEMERTFEKLPDRDGVTWNVLIEGYSLSGLV 116

Query: 90  CEARKLFEEMPER-----NVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISW----NA 140
             A K +  M +        V+  +M+     NG ++  +++   +      S+    + 
Sbjct: 117 GAAVKAYNTMMKDFSSNLTRVTLMTMLKLSSSNGHVSLGKQIHGQVIKLGFESYLLVGSP 176

Query: 141 MIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSW 200
           ++  Y +   + +A  +F  +++RN V + +++ G    G +E+   LFR M  K+ VSW
Sbjct: 177 LLDMYSKVGCISDAKKVFYGLDDRNTVMYNTLMGGLLACGMIEDALQLFRGM-EKDSVSW 235

Query: 201 TAMIGGFAWNGFHKESLLLFIEMK----GICDNGNNCNVQSCNSMINGYIRFGRLEEA-- 254
           +AMI G A NG  KE++  F EMK     +        + +C  +  G I  GR   A  
Sbjct: 236 SAMIKGLAQNGMEKEAIECFREMKIEGLKMDQYPFGSVLPACGGL--GAINDGRQIHACI 293

Query: 255 --QNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNEL 312
              NL D + V      +++ID Y     +  A  +F  M  ++ V+WTAM+ G  Q   
Sbjct: 294 IRTNLQDHIYVG-----SALIDMYCKCKCLHYAKTVFDRMKQKNVVSWTAMVVGYGQTGR 348

Query: 313 FVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENC 372
             EA  +F++M+  G+ P + T      A    ++++ G Q H   +       + + N 
Sbjct: 349 AGEAVKIFLDMQRSGIDPDHYTLGQAISACANISSLEEGSQFHGKAITAGLIHYITVSNS 408

Query: 373 LISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPN 432
           L+++Y KCG ID++  +F+ M  RD VSW +MV  ++  G A E +++F+ M++ G  P+
Sbjct: 409 LVTLYGKCGDIDDSTRLFNEMNVRDEVSWTAMVSAYAQFGRAVEAIQLFDKMVQLGLKPD 468

Query: 433 SVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFV 492
            VT  G++SACS AGLV +G   F  M + Y I P   HY  MI+L  R+G+I+EA  F+
Sbjct: 469 GVTLTGVISACSRAGLVEKGQRYFELMINEYGIVPSNGHYSCMIDLFSRSGRIEEAMGFI 528

Query: 493 LRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRH 552
             +PF PD   W  LL AC   +GN EI + AA+ L+ELDP +   + +L +IYA+ G+ 
Sbjct: 529 NGMPFRPDAIGWTTLLSAC-RNKGNLEIGKWAAESLIELDPHHPAGYTLLSSIYASKGKW 587

Query: 553 VEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDK 590
               +LR  M  K VRK PG SW+   G +  F + D+
Sbjct: 588 DCVAQLRRGMKEKNVRKEPGQSWIKWKGKLHSFSADDE 625



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 118/511 (23%), Positives = 214/511 (41%), Gaps = 96/511 (18%)

Query: 21  YSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEM------------ 68
           YSK G + E +  F+ +P R+ V++N ++ G+  +G +  A + +  M            
Sbjct: 79  YSKSGHLSEMERTFEKLPDRDGVTWNVLIEGYSLSGLVGAAVKAYNTMMKDFSSNLTRVT 138

Query: 69  --------PERNVVSWTAMICG--------------------LADAGRVCEARKLFEEMP 100
                        VS    I G                     +  G + +A+K+F  + 
Sbjct: 139 LMTMLKLSSSNGHVSLGKQIHGQVIKLGFESYLLVGSPLLDMYSKVGCISDAKKVFYGLD 198

Query: 101 ERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEE 160
           +RN V +N+++ GL+  G + +A ++F  M  K+ +SW+AMI G  +  M  EAI  F E
Sbjct: 199 DRNTVMYNTLMGGLLACGMIEDALQLFRGME-KDSVSWSAMIKGLAQNGMEKEAIECFRE 257

Query: 161 ME---------------------------------------ERNVVTWTSMISGYCRAGE 181
           M+                                       + ++   +++I  YC+   
Sbjct: 258 MKIEGLKMDQYPFGSVLPACGGLGAINDGRQIHACIIRTNLQDHIYVGSALIDMYCKCKC 317

Query: 182 VEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSM 241
           +     +F RM +KNVVSWTAM+ G+   G   E++ +F++M+    +G + +  +    
Sbjct: 318 LHYAKTVFDRMKQKNVVSWTAMVVGYGQTGRAGEAVKIFLDMQ---RSGIDPDHYTLGQA 374

Query: 242 INGYIRFGRLEEAQNLFDTVPVRDEISW----TSMIDGYLSVGQVSNAYYLFHNMPDRDA 297
           I+       LEE             I +     S++  Y   G + ++  LF+ M  RD 
Sbjct: 375 ISACANISSLEEGSQFHGKAITAGLIHYITVSNSLVTLYGKCGDIDDSTRLFNEMNVRDE 434

Query: 298 VAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCV 357
           V+WTAM+S   Q    VEA  LF +M   G+ P   T + +  A      ++ G++   +
Sbjct: 435 VSWTAMVSAYAQFGRAVEAIQLFDKMVQLGLKPDGVTLTGVISACSRAGLVEKGQRYFEL 494

Query: 358 LMKTESESDLILEN----CLISMYAKCGVIDNAYNIFSNMVSR-DLVSWNSMVMGFSHHG 412
           ++   +E  ++  N    C+I ++++ G I+ A    + M  R D + W +++    + G
Sbjct: 495 MI---NEYGIVPSNGHYSCMIDLFSRSGRIEEAMGFINGMPFRPDAIGWTTLLSACRNKG 551

Query: 413 LANETLKVFESMLE-SGTHPNSVTFLGILSA 442
                    ES++E    HP   T L  + A
Sbjct: 552 NLEIGKWAAESLIELDPHHPAGYTLLSSIYA 582



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 78/338 (23%), Positives = 137/338 (40%), Gaps = 66/338 (19%)

Query: 239 NSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAV 298
           N++++ Y        A+ +FD +P  +  SW +++  Y   G +S     F  +PDRD V
Sbjct: 42  NNIVHAYALIRSSIYARRVFDGIPQPNLFSWNNLLLAYSKSGHLSEMERTFEKLPDRDGV 101

Query: 299 AWTAMISGLVQNELFVEATYLFMEMRAHGVPPLN-ATFSVLFGAAGATANIDLGRQIHCV 357
            W  +I G   + L   A   +  M       L   T   +   + +  ++ LG+QIH  
Sbjct: 102 TWNVLIEGYSLSGLVGAAVKAYNTMMKDFSSNLTRVTLMTMLKLSSSNGHVSLGKQIHGQ 161

Query: 358 LMKTESESDLILENCLISMYAK-------------------------------CGVIDNA 386
           ++K   ES L++ + L+ MY+K                               CG+I++A
Sbjct: 162 VIKLGFESYLLVGSPLLDMYSKVGCISDAKKVFYGLDDRNTVMYNTLMGGLLACGMIEDA 221

Query: 387 YNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHA 446
             +F  M  +D VSW++M+ G + +G+  E ++ F  M   G   +   F  +L AC   
Sbjct: 222 LQLFRGM-EKDSVSWSAMIKGLAQNGMEKEAIECFREMKIEGLKMDQYPFGSVLPACGGL 280

Query: 447 GLVSRGWELF---------------NAMFDVY---------------KIQPGPEHYVSMI 476
           G ++ G ++                +A+ D+Y                 Q     + +M+
Sbjct: 281 GAINDGRQIHACIIRTNLQDHIYVGSALIDMYCKCKCLHYAKTVFDRMKQKNVVSWTAMV 340

Query: 477 NLLGRAGKIKEAEEFVL---RLPFEPDHRIWGALLGAC 511
              G+ G+  EA +  L   R   +PDH   G  + AC
Sbjct: 341 VGYGQTGRAGEAVKIFLDMQRSGIDPDHYTLGQAISAC 378



 Score = 95.5 bits (236), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 78/282 (27%), Positives = 131/282 (46%), Gaps = 51/282 (18%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNV---- 73
           I  Y K   +  AK +F  M Q+NVVS+ AM+ G+ Q GR  EA ++F +M    +    
Sbjct: 309 IDMYCKCKCLHYAKTVFDRMKQKNVVSWTAMVVGYGQTGRAGEAVKIFLDMQRSGIDPDH 368

Query: 74  VSWTAMICGLADAGRVCEARKLFEEMPERNVVSW----NSMVVGLIRNGELNEARKVFNS 129
            +    I   A+   + E  +   +     ++ +    NS+V    + G+++++ ++FN 
Sbjct: 369 YTLGQAISACANISSLEEGSQFHGKAITAGLIHYITVSNSLVTLYGKCGDIDDSTRLFNE 428

Query: 130 MPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNV----VTWTSMISGYCRAGEVEEG 185
           M +++ +SW AM++ Y +     EAI LF++M +  +    VT T +IS   RAG VE+G
Sbjct: 429 MNVRDEVSWTAMVSAYAQFGRAVEAIQLFDKMVQLGLKPDGVTLTGVISACSRAGLVEKG 488

Query: 186 YCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGY 245
              F                            L+  E   +  NG+     SC  MI+ +
Sbjct: 489 QRYFE---------------------------LMINEYGIVPSNGH----YSC--MIDLF 515

Query: 246 IRFGRLEEAQNLFDTVPVR-DEISWTSMID-----GYLSVGQ 281
            R GR+EEA    + +P R D I WT+++      G L +G+
Sbjct: 516 SRSGRIEEAMGFINGMPFRPDAIGWTTLLSACRNKGNLEIGK 557



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 60/198 (30%), Positives = 98/198 (49%), Gaps = 19/198 (9%)

Query: 16  SSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNV-- 73
           S +T Y K G ID++  LF  M  R+ VS+ AM+S + Q GR  EA +LF++M +  +  
Sbjct: 408 SLVTLYGKCGDIDDSTRLFNEMNVRDEVSWTAMVSAYAQFGRAVEAIQLFDKMVQLGLKP 467

Query: 74  --VSWTAMICGLADAGRVCEARKLFEEM-PERNVVSWNS----MVVGLIRNGELNEARKV 126
             V+ T +I   + AG V + ++ FE M  E  +V  N     M+    R+G + EA   
Sbjct: 468 DGVTLTGVISACSRAGLVEKGQRYFELMINEYGIVPSNGHYSCMIDLFSRSGRIEEAMGF 527

Query: 127 FNSMPIK-NVISWNAMIA-----GYVECCM-MGEAIVLFEEMEERNVVTWTSMISGYCRA 179
            N MP + + I W  +++     G +E      E+++   E++  +   +T + S Y   
Sbjct: 528 INGMPFRPDAIGWTTLLSACRNKGNLEIGKWAAESLI---ELDPHHPAGYTLLSSIYASK 584

Query: 180 GEVEEGYCLFRRMPRKNV 197
           G+ +    L R M  KNV
Sbjct: 585 GKWDCVAQLRRGMKEKNV 602



 Score = 44.3 bits (103), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 34/150 (22%), Positives = 68/150 (45%), Gaps = 7/150 (4%)

Query: 352 RQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHH 411
           + IH  +++T    +  L N ++  YA       A  +F  +   +L SWN++++ +S  
Sbjct: 23  KMIHGNIIRTLPHPETFLHNNIVHAYALIRSSIYARRVFDGIPQPNLFSWNNLLLAYSKS 82

Query: 412 GLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEH 471
           G  +E  + FE + +     + VT+  ++   S +GLV    + +N M   +        
Sbjct: 83  GHLSEMERTFEKLPDR----DGVTWNVLIEGYSLSGLVGAAVKAYNTMMKDFSSNLTRVT 138

Query: 472 YVSMINLLGRAGKI---KEAEEFVLRLPFE 498
            ++M+ L    G +   K+    V++L FE
Sbjct: 139 LMTMLKLSSSNGHVSLGKQIHGQVIKLGFE 168


>gi|449525261|ref|XP_004169636.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Cucumis sativus]
          Length = 650

 Score =  294 bits (752), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 169/458 (36%), Positives = 256/458 (55%), Gaps = 6/458 (1%)

Query: 146 VECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNV--VSWTAM 203
           V+  M    +++F ++   N   WT+MI GY   G + E    + RM R  V  VS+T  
Sbjct: 87  VDVPMGSYPLLVFGQVNYPNPFLWTAMIRGYALQGLLSESTNFYTRMRRDGVGPVSFTFS 146

Query: 204 IGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPV 263
               A        L   +  + I   G   ++   NSMI+ Y++ G L  A+ +FD +  
Sbjct: 147 ALFKACGAALNMDLGKQVHAQTILIGGFASDLYVGNSMIDLYVKCGFLGCARKVFDEMSE 206

Query: 264 RDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEM 323
           RD +SWT +I  Y   G + +A  LF ++P +D VAWTAM++G  QN    EA   F +M
Sbjct: 207 RDVVSWTELIVAYAKYGDMESASGLFDDLPSKDMVAWTAMVTGYAQNGRPKEALEYFQKM 266

Query: 324 RAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTE--SESDLILENCLISMYAKCG 381
           +  G+     T + +  A      +     I  +  ++      ++++ + LI MY+KCG
Sbjct: 267 QDVGMETDEVTLAGVISACAQLGAVKHANWIRDIAERSGFGPSGNVVVGSALIDMYSKCG 326

Query: 382 VIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILS 441
             D AY +F  M  R++ S++SM++G++ HG A+  L++F  ML++   PN VTF+GILS
Sbjct: 327 SPDEAYKVFEVMKERNVFSYSSMILGYAMHGRAHSALQLFHDMLKTEIRPNKVTFIGILS 386

Query: 442 ACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDH 501
           ACSHAGLV +G +LF  M   + + P P+HY  M++LLGRAG ++EA + V  +P EP+ 
Sbjct: 387 ACSHAGLVEQGRQLFAKMEKFFGVAPSPDHYACMVDLLGRAGCLEEALDLVKTMPMEPNG 446

Query: 502 RIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMD 561
            +WGALLGAC    GN +IA+ AA  L +L+P     +++L NIYA++GR  E  KLR  
Sbjct: 447 GVWGALLGACRI-HGNPDIAQIAANELFKLEPNGIGNYILLSNIYASAGRWEEVSKLRKV 505

Query: 562 MGLKGVRKVPGCSWLM-RNGGIQMFLSGDKIPAQVAEI 598
           +  KG +K PGCSW   +NG I  F +GD    + +EI
Sbjct: 506 IREKGFKKNPGCSWFEGKNGEIHDFFAGDTTHPRSSEI 543



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 91/348 (26%), Positives = 160/348 (45%), Gaps = 23/348 (6%)

Query: 64  LFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRN------ 117
           +F ++   N   WTAMI G A  G + E+   +  M    V   +     L +       
Sbjct: 98  VFGQVNYPNPFLWTAMIRGYALQGLLSESTNFYTRMRRDGVGPVSFTFSALFKACGAALN 157

Query: 118 ---GELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMIS 174
              G+   A+ +       ++   N+MI  YV+C  +G A  +F+EM ER+VV+WT +I 
Sbjct: 158 MDLGKQVHAQTILIGGFASDLYVGNSMIDLYVKCGFLGCARKVFDEMSERDVVSWTELIV 217

Query: 175 GYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCN 234
            Y + G++E    LF  +P K++V+WTAM+ G+A NG  KE+L  F +M+   D G   +
Sbjct: 218 AYAKYGDMESASGLFDDLPSKDMVAWTAMVTGYAQNGRPKEALEYFQKMQ---DVGMETD 274

Query: 235 VQSCNSMINGYIRFGRLEEAQNLFDTV------PVRDEISWTSMIDGYLSVGQVSNAYYL 288
             +   +I+   + G ++ A  + D        P  + +  +++ID Y   G    AY +
Sbjct: 275 EVTLAGVISACAQLGAVKHANWIRDIAERSGFGPSGNVVVGSALIDMYSKCGSPDEAYKV 334

Query: 289 FHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANI 348
           F  M +R+  ++++MI G   +     A  LF +M    + P   TF  +  A      +
Sbjct: 335 FEVMKERNVFSYSSMILGYAMHGRAHSALQLFHDMLKTEIRPNKVTFIGILSACSHAGLV 394

Query: 349 DLGRQIHCVLMK---TESESDLILENCLISMYAKCGVIDNAYNIFSNM 393
           + GRQ+   + K        D     C++ +  + G ++ A ++   M
Sbjct: 395 EQGRQLFAKMEKFFGVAPSPDHYA--CMVDLLGRAGCLEEALDLVKTM 440



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 84/296 (28%), Positives = 140/296 (47%), Gaps = 32/296 (10%)

Query: 46  NAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVV 105
           N+M+  +++ G L  AR++F+EM ER+VVSWT +I   A  G +  A  LF+++P +++V
Sbjct: 182 NSMIDLYVKCGFLGCARKVFDEMSERDVVSWTELIVAYAKYGDMESASGLFDDLPSKDMV 241

Query: 106 SWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIV---LFEEME 162
           +W +MV G  +NG   EA + F  M    + +    +AG +  C    A+       ++ 
Sbjct: 242 AWTAMVTGYAQNGRPKEALEYFQKMQDVGMETDEVTLAGVISACAQLGAVKHANWIRDIA 301

Query: 163 ER-------NVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKE 215
           ER       NVV  +++I  Y + G  +E Y +F  M  +NV S+++MI G+A +G    
Sbjct: 302 ERSGFGPSGNVVVGSALIDMYSKCGSPDEAYKVFEVMKERNVFSYSSMILGYAMHGRAHS 361

Query: 216 SLLLFIEMKGICDNGNNCN----VQSCNSMINGYIRFGR--LEEAQNLFDTVPVRDEISW 269
           +L LF +M       N       + +C+    G +  GR    + +  F   P  D   +
Sbjct: 362 ALQLFHDMLKTEIRPNKVTFIGILSACSHA--GLVEQGRQLFAKMEKFFGVAPSPDH--Y 417

Query: 270 TSMIDGYLSVGQVSNAYYLFHNMP-DRDAVAWTAM-----------ISGLVQNELF 313
             M+D     G +  A  L   MP + +   W A+           I+ +  NELF
Sbjct: 418 ACMVDLLGRAGCLEEALDLVKTMPMEPNGGVWGALLGACRIHGNPDIAQIAANELF 473



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 78/262 (29%), Positives = 134/262 (51%), Gaps = 16/262 (6%)

Query: 16  SSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVS 75
           S I  Y K GF+  A+ +F  M +R+VVS+  ++  + + G +  A  LF+++P +++V+
Sbjct: 183 SMIDLYVKCGFLGCARKVFDEMSERDVVSWTELIVAYAKYGDMESASGLFDDLPSKDMVA 242

Query: 76  WTAMICGLADAGRVCEARKLFEEMP----ERNVVSWNSMVVGLIRNGELNEARKVFNSM- 130
           WTAM+ G A  GR  EA + F++M     E + V+   ++    + G +  A  + +   
Sbjct: 243 WTAMVTGYAQNGRPKEALEYFQKMQDVGMETDEVTLAGVISACAQLGAVKHANWIRDIAE 302

Query: 131 -----PIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEG 185
                P  NV+  +A+I  Y +C    EA  +FE M+ERNV +++SMI GY   G     
Sbjct: 303 RSGFGPSGNVVVGSALIDMYSKCGSPDEAYKVFEVMKERNVFSYSSMILGYAMHGRAHSA 362

Query: 186 YCLFRRM----PRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSM 241
             LF  M     R N V++  ++   +  G  ++   LF +M+       + +  +C  M
Sbjct: 363 LQLFHDMLKTEIRPNKVTFIGILSACSHAGLVEQGRQLFAKMEKFFGVAPSPDHYAC--M 420

Query: 242 INGYIRFGRLEEAQNLFDTVPV 263
           ++   R G LEEA +L  T+P+
Sbjct: 421 VDLLGRAGCLEEALDLVKTMPM 442



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 90/328 (27%), Positives = 156/328 (47%), Gaps = 30/328 (9%)

Query: 41  NVVSYNAMLSGFLQNGRLSEARRLFEEMPERNV----VSWTAMI--CGLA---DAGRVCE 91
           N   + AM+ G+   G LSE+   +  M    V     +++A+   CG A   D G+   
Sbjct: 106 NPFLWTAMIRGYALQGLLSESTNFYTRMRRDGVGPVSFTFSALFKACGAALNMDLGKQVH 165

Query: 92  ARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMM 151
           A+ +       ++   NSM+   ++ G L  ARKVF+ M  ++V+SW  +I  Y +   M
Sbjct: 166 AQTILIGGFASDLYVGNSMIDLYVKCGFLGCARKVFDEMSERDVVSWTELIVAYAKYGDM 225

Query: 152 GEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMP----RKNVVSWTAMIGGF 207
             A  LF+++  +++V WT+M++GY + G  +E    F++M       + V+   +I   
Sbjct: 226 ESASGLFDDLPSKDMVAWTAMVTGYAQNGRPKEALEYFQKMQDVGMETDEVTLAGVISAC 285

Query: 208 AWNGF--HKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRD 265
           A  G   H   +    E  G   +G   NV   +++I+ Y + G  +EA  +F+ +  R+
Sbjct: 286 AQLGAVKHANWIRDIAERSGFGPSG---NVVVGSALIDMYSKCGSPDEAYKVFEVMKERN 342

Query: 266 EISWTSMIDGYLSVGQVSNAYYLFHNM------PDRDAVAWTAMISGLVQNELFVEATYL 319
             S++SMI GY   G+  +A  LFH+M      P++  V +  ++S      L  +   L
Sbjct: 343 VFSYSSMILGYAMHGRAHSALQLFHDMLKTEIRPNK--VTFIGILSACSHAGLVEQGRQL 400

Query: 320 FMEM-RAHGVPPLNATFSV---LFGAAG 343
           F +M +  GV P    ++    L G AG
Sbjct: 401 FAKMEKFFGVAPSPDHYACMVDLLGRAG 428



 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 70/208 (33%), Positives = 108/208 (51%), Gaps = 19/208 (9%)

Query: 1   MSERNHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSE 60
           MSER+     VV  T  I  Y+K G ++ A  LF  +P +++V++ AM++G+ QNGR  E
Sbjct: 204 MSERD-----VVSWTELIVAYAKYGDMESASGLFDDLPSKDMVAWTAMVTGYAQNGRPKE 258

Query: 61  ARRLFEEMP----ERNVVSWTAMICGLADAGRVCEA---RKLFEEM---PERNVVSWNSM 110
           A   F++M     E + V+   +I   A  G V  A   R + E     P  NVV  +++
Sbjct: 259 ALEYFQKMQDVGMETDEVTLAGVISACAQLGAVKHANWIRDIAERSGFGPSGNVVVGSAL 318

Query: 111 VVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEER----NV 166
           +    + G  +EA KVF  M  +NV S+++MI GY        A+ LF +M +     N 
Sbjct: 319 IDMYSKCGSPDEAYKVFEVMKERNVFSYSSMILGYAMHGRAHSALQLFHDMLKTEIRPNK 378

Query: 167 VTWTSMISGYCRAGEVEEGYCLFRRMPR 194
           VT+  ++S    AG VE+G  LF +M +
Sbjct: 379 VTFIGILSACSHAGLVEQGRQLFAKMEK 406


>gi|357146098|ref|XP_003573875.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Brachypodium distachyon]
          Length = 652

 Score =  294 bits (752), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 165/468 (35%), Positives = 260/468 (55%), Gaps = 5/468 (1%)

Query: 134 NVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMP 193
           +V   NA +     C  M EA  LF+    R++V+W ++I GY R G   E   +F RM 
Sbjct: 154 DVFVVNAAMHFLAVCSSMAEARKLFDGSHVRDLVSWNTLIGGYVRRGVPREALEMFWRMV 213

Query: 194 RKNVVS--WTAMIGGFAWNGFHKESLLLFIEMKGICD-NGNNCNVQSCNSMINGYIRFGR 250
               V+     MIG  + +   ++ L L   + G  + +G  C V+  N +++ YI+ G 
Sbjct: 214 GDGAVTPDEVTMIGVVSGSAQLRD-LELGRRLHGYVESHGVRCTVRLMNVVMDMYIKCGD 272

Query: 251 LEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQN 310
           LE A+++F+ +  +  +SWT+MI GY   G + +A  +F  MP+RD   W A+++G VQ 
Sbjct: 273 LERAKSVFEGIDKKTIVSWTTMIVGYAQFGLMDDARKVFDEMPERDVFPWNALMTGYVQC 332

Query: 311 ELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILE 370
           +   EA  LF +M+   V P + T   L  A      +++G  +H  + +      ++L 
Sbjct: 333 KRGKEALRLFHDMQEAMVEPDDITMVNLLSACSQLGALEMGMWVHHYIDRRRVSLSVMLG 392

Query: 371 NCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTH 430
             L+ MY+KCG I+ A  +F  +  ++ ++W +M+ G ++HG A+  +K F+ M+E G  
Sbjct: 393 TNLVDMYSKCGNIEKAIRVFKEIPEKNALTWTAMISGLANHGHADVAIKYFQRMIELGLQ 452

Query: 431 PNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEE 490
           P+ +TF+G+LSAC HAGLV  G E F+ M   Y ++   +HY  M++LLGRAG + EAE 
Sbjct: 453 PDEITFIGVLSACCHAGLVKEGQEFFSLMVSKYHLERKMKHYSCMVDLLGRAGYLDEAEH 512

Query: 491 FVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASG 550
            V  +P EPD  +WGAL  AC    GN  + E AA +L+ELDP ++  +V+L N+YA + 
Sbjct: 513 LVNTMPMEPDAVVWGALFFACRM-HGNITLGEKAAMKLVELDPGDSGIYVLLANMYAEAN 571

Query: 551 RHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
              +  K+R+ M   GV KVPGCS +  NG +  F+  DK    +A I
Sbjct: 572 MRKKADKVRVMMRHLGVEKVPGCSCIELNGVVHEFIVKDKSHTDIAAI 619



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 93/388 (23%), Positives = 186/388 (47%), Gaps = 20/388 (5%)

Query: 41  NVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMP 100
           +V   NA +        ++EAR+LF+    R++VSW  +I G    G   EA ++F  M 
Sbjct: 154 DVFVVNAAMHFLAVCSSMAEARKLFDGSHVRDLVSWNTLIGGYVRRGVPREALEMFWRMV 213

Query: 101 ERNVVSWNSM-VVGLIRNG----ELNEARKV---FNSMPIKNVISW-NAMIAGYVECCMM 151
               V+ + + ++G++       +L   R++     S  ++  +   N ++  Y++C  +
Sbjct: 214 GDGAVTPDEVTMIGVVSGSAQLRDLELGRRLHGYVESHGVRCTVRLMNVVMDMYIKCGDL 273

Query: 152 GEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNG 211
             A  +FE ++++ +V+WT+MI GY + G +++   +F  MP ++V  W A++ G+    
Sbjct: 274 ERAKSVFEGIDKKTIVSWTTMIVGYAQFGLMDDARKVFDEMPERDVFPWNALMTGYVQCK 333

Query: 212 FHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISW-- 269
             KE+L LF +M+      ++  +    ++++   + G LE    +   +  R  +S   
Sbjct: 334 RGKEALRLFHDMQEAMVEPDDITMV---NLLSACSQLGALEMGMWVHHYID-RRRVSLSV 389

Query: 270 ---TSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAH 326
              T+++D Y   G +  A  +F  +P+++A+ WTAMISGL  +     A   F  M   
Sbjct: 390 MLGTNLVDMYSKCGNIEKAIRVFKEIPEKNALTWTAMISGLANHGHADVAIKYFQRMIEL 449

Query: 327 GVPPLNATFSVLFGAAGATANIDLGRQIHCVLM-KTESESDLILENCLISMYAKCGVIDN 385
           G+ P   TF  +  A      +  G++   +++ K   E  +   +C++ +  + G +D 
Sbjct: 450 GLQPDEITFIGVLSACCHAGLVKEGQEFFSLMVSKYHLERKMKHYSCMVDLLGRAGYLDE 509

Query: 386 AYNIFSNM-VSRDLVSWNSMVMGFSHHG 412
           A ++ + M +  D V W ++      HG
Sbjct: 510 AEHLVNTMPMEPDAVVWGALFFACRMHG 537



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 87/360 (24%), Positives = 158/360 (43%), Gaps = 88/360 (24%)

Query: 29  EAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLF-----------EEMPERNVVSWT 77
           EA+ LF     R++VS+N ++ G+++ G   EA  +F           +E+    VVS +
Sbjct: 173 EARKLFDGSHVRDLVSWNTLIGGYVRRGVPREALEMFWRMVGDGAVTPDEVTMIGVVSGS 232

Query: 78  AMICGLA-----------------------------DAGRVCEARKLFEEMPERNVVSWN 108
           A +  L                                G +  A+ +FE + ++ +VSW 
Sbjct: 233 AQLRDLELGRRLHGYVESHGVRCTVRLMNVVMDMYIKCGDLERAKSVFEGIDKKTIVSWT 292

Query: 109 SMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEER---- 164
           +M+VG  + G +++ARKVF+ MP ++V  WNA++ GYV+C    EA+ LF +M+E     
Sbjct: 293 TMIVGYAQFGLMDDARKVFDEMPERDVFPWNALMTGYVQCKRGKEALRLFHDMQEAMVEP 352

Query: 165 -----------------------------------NVVTWTSMISGYCRAGEVEEGYCLF 189
                                              +V+  T+++  Y + G +E+   +F
Sbjct: 353 DDITMVNLLSACSQLGALEMGMWVHHYIDRRRVSLSVMLGTNLVDMYSKCGNIEKAIRVF 412

Query: 190 RRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFG 249
           + +P KN ++WTAMI G A +G    ++  F  M  +   G   +  +   +++     G
Sbjct: 413 KEIPEKNALTWTAMISGLANHGHADVAIKYFQRMIEL---GLQPDEITFIGVLSACCHAG 469

Query: 250 RLEEAQNLFDTVPVRDEIS-----WTSMIDGYLSVGQVSNAYYLFHNMP-DRDAVAWTAM 303
            ++E Q  F  +  +  +      ++ M+D     G +  A +L + MP + DAV W A+
Sbjct: 470 LVKEGQEFFSLMVSKYHLERKMKHYSCMVDLLGRAGYLDEAEHLVNTMPMEPDAVVWGAL 529



 Score = 92.4 bits (228), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 75/278 (26%), Positives = 129/278 (46%), Gaps = 46/278 (16%)

Query: 8   KSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEE 67
           K  +V  T+ I  Y++ G +D+A+ +F  MP+R+V  +NA+++G++Q  R  EA RLF +
Sbjct: 285 KKTIVSWTTMIVGYAQFGLMDDARKVFDEMPERDVFPWNALMTGYVQCKRGKEALRLFHD 344

Query: 68  MPERNVVSWTAMICGLADAGRVCEARKL---FEEMPERNVVSWNSMV-VGLI----RNGE 119
           M E  V      +  L  A     A ++        +R  VS + M+   L+    + G 
Sbjct: 345 MQEAMVEPDDITMVNLLSACSQLGALEMGMWVHHYIDRRRVSLSVMLGTNLVDMYSKCGN 404

Query: 120 LNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNV----VTWTSMISG 175
           + +A +VF  +P KN ++W AMI+G         AI  F+ M E  +    +T+  ++S 
Sbjct: 405 IEKAIRVFKEIPEKNALTWTAMISGLANHGHADVAIKYFQRMIELGLQPDEITFIGVLSA 464

Query: 176 YCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNV 235
            C AG V+EG   F  M  K                +H E                   +
Sbjct: 465 CCHAGLVKEGQEFFSLMVSK----------------YHLER-----------------KM 491

Query: 236 QSCNSMINGYIRFGRLEEAQNLFDTVPVR-DEISWTSM 272
           +  + M++   R G L+EA++L +T+P+  D + W ++
Sbjct: 492 KHYSCMVDLLGRAGYLDEAEHLVNTMPMEPDAVVWGAL 529



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/117 (26%), Positives = 55/117 (47%), Gaps = 1/117 (0%)

Query: 330 PLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNI 389
           P + TF  L  A       + G  +   ++     +D+ + N  +   A C  +  A  +
Sbjct: 118 PDHLTFPFLLKACARLQERNYGNAVLGNVLSLGFHADVFVVNAAMHFLAVCSSMAEARKL 177

Query: 390 FSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESG-THPNSVTFLGILSACSH 445
           F     RDLVSWN+++ G+   G+  E L++F  M+  G   P+ VT +G++S  + 
Sbjct: 178 FDGSHVRDLVSWNTLIGGYVRRGVPREALEMFWRMVGDGAVTPDEVTMIGVVSGSAQ 234


>gi|357520433|ref|XP_003630505.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355524527|gb|AET04981.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 998

 Score =  294 bits (752), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 197/664 (29%), Positives = 324/664 (48%), Gaps = 110/664 (16%)

Query: 15  TSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEM------ 68
           TS I  Y+K   ID+A+ LF  +  +   ++  +++G+ + GR   + +LF++M      
Sbjct: 180 TSLIDFYTKHACIDDARLLFDGLQVKTSFTWTTIIAGYSKQGRSQVSLKLFDQMKEGHVC 239

Query: 69  PERNVVSW-----------------------------TAMICGLADAGRVCE----ARKL 95
           P++ V+S                               +M+ G  D    C      RKL
Sbjct: 240 PDKYVLSSVLSACLMLKFLEGGKQIHCYVLRSGIVMDVSMVNGFIDFYFKCHKVQLGRKL 299

Query: 96  FEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSM------------------------- 130
           F+ M ++NVVSW +++ G ++N    +A  +F  M                         
Sbjct: 300 FDRMVDKNVVSWTTVIAGCMQNSFHRDALDLFVEMARMGWNPDAFGCTSVLNSCGSLVAL 359

Query: 131 ---------PIKNVIS-----WNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGY 176
                     IK  I       N +I  Y +C  + +A  +F  M   ++V++ +MI GY
Sbjct: 360 EKGRQVHAYAIKVNIDNDDFVKNGLIDMYAKCDSLTDARKVFNLMAAIDLVSYNAMIEGY 419

Query: 177 CRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQ 236
            R  ++ E   LFR M R ++ S T               LL+F+ + G+  + +  +++
Sbjct: 420 SRQDKLCEALDLFREM-RLSLSSPT---------------LLIFVSLLGV--SASLYHLE 461

Query: 237 SCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRD 296
             N +    I++G               DE + +++ID Y    +V +A  +F  + D+D
Sbjct: 462 LSNQIHGLIIKYG------------VSLDEFAGSALIDVYSKCSRVGDARLVFEEIQDKD 509

Query: 297 AVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHC 356
            V WTAM SG  Q     E+  L+  ++   + P   TF+ +  AA   A++  G+Q H 
Sbjct: 510 IVVWTAMFSGYTQQSENEESLKLYKCLQMSRLKPNEFTFAAVITAASNIASLRHGQQFHN 569

Query: 357 VLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANE 416
            ++K   + D  + N L+ MYAK G I+ A+  F +   +D   WNSM+  ++ HG A +
Sbjct: 570 QVIKMGFDDDPFVANTLVDMYAKSGSIEEAHKAFISTNWKDTACWNSMIATYAQHGEAEK 629

Query: 417 TLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMI 476
            L+VFE M+  G  PN VTF+G+LSACSH GL+  G++ F++M   + I+PG EHYV M+
Sbjct: 630 ALQVFEDMIMEGLKPNYVTFVGVLSACSHTGLLDLGFDHFDSM-SQFGIEPGIEHYVCMV 688

Query: 477 NLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNA 536
           +LLGRAGK+ EA+EF+ ++P +    +W +LL AC    GN E+  +AA+  +  +P ++
Sbjct: 689 SLLGRAGKLYEAKEFIEKMPIKQAAVVWRSLLSACR-VSGNVELGTYAAEMAISCNPADS 747

Query: 537 PAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVA 596
            ++V+L NI+A+ G  V   +LR  M + GV K PGCSW+  N  I  F++ D      A
Sbjct: 748 GSYVLLSNIFASKGMWVNVRRLREKMDISGVVKEPGCSWIEVNNEIHKFIAKDTAHRDSA 807

Query: 597 EILL 600
            I L
Sbjct: 808 PISL 811



 Score =  131 bits (330), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 101/422 (23%), Positives = 194/422 (45%), Gaps = 61/422 (14%)

Query: 39  QRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLF-- 96
           + ++   N +L  + +   ++ A +LF+ M  +N+V+W++M+          EA  LF  
Sbjct: 71  KHDIFLVNTLLHAYSKLNLVNHANKLFDTMSHKNLVTWSSMVSMYTHHSHCLEALMLFVQ 130

Query: 97  -----EEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMP----IKNVISWNAMIAGYVE 147
                 E P   +++  S+V    + G LN A ++   +     +++V    ++I  Y +
Sbjct: 131 FMRSCNEKPNEYILA--SVVRACTQFGGLNPALQIHGLVVKGGYVQDVYVCTSLIDFYTK 188

Query: 148 CCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRM------PRKNVVSWT 201
              + +A +LF+ ++ +   TWT++I+GY + G  +    LF +M      P K V+S  
Sbjct: 189 HACIDDARLLFDGLQVKTSFTWTTIIAGYSKQGRSQVSLKLFDQMKEGHVCPDKYVLSSV 248

Query: 202 ---AMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLF 258
               ++  F   G   + +  ++   GI       +V   N  I+ Y +  +++  + LF
Sbjct: 249 LSACLMLKFLEGG---KQIHCYVLRSGIV-----MDVSMVNGFIDFYFKCHKVQLGRKLF 300

Query: 259 DTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATY 318
           D +  ++ +SWT+                               +I+G +QN    +A  
Sbjct: 301 DRMVDKNVVSWTT-------------------------------VIAGCMQNSFHRDALD 329

Query: 319 LFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYA 378
           LF+EM   G  P     + +  + G+   ++ GRQ+H   +K   ++D  ++N LI MYA
Sbjct: 330 LFVEMARMGWNPDAFGCTSVLNSCGSLVALEKGRQVHAYAIKVNIDNDDFVKNGLIDMYA 389

Query: 379 KCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLG 438
           KC  + +A  +F+ M + DLVS+N+M+ G+S      E L +F  M  S + P  + F+ 
Sbjct: 390 KCDSLTDARKVFNLMAAIDLVSYNAMIEGYSRQDKLCEALDLFREMRLSLSSPTLLIFVS 449

Query: 439 IL 440
           +L
Sbjct: 450 LL 451



 Score =  115 bits (287), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 72/321 (22%), Positives = 148/321 (46%), Gaps = 6/321 (1%)

Query: 139 NAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVV 198
           N + + ++ CC    + ++     + ++    +++  Y +   V     LF  M  KN+V
Sbjct: 47  NLLQSPHIPCCKKIHSKIVVFGFHKHDIFLVNTLLHAYSKLNLVNHANKLFDTMSHKNLV 106

Query: 199 SWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLF 258
           +W++M+  +  +    E+L+LF++    C+   N  + +  S++    +FG L  A  + 
Sbjct: 107 TWSSMVSMYTHHSHCLEALMLFVQFMRSCNEKPNEYILA--SVVRACTQFGGLNPALQIH 164

Query: 259 DTVP----VRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFV 314
             V     V+D    TS+ID Y     + +A  LF  +  + +  WT +I+G  +     
Sbjct: 165 GLVVKGGYVQDVYVCTSLIDFYTKHACIDDARLLFDGLQVKTSFTWTTIIAGYSKQGRSQ 224

Query: 315 EATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLI 374
            +  LF +M+   V P     S +  A      ++ G+QIHC ++++    D+ + N  I
Sbjct: 225 VSLKLFDQMKEGHVCPDKYVLSSVLSACLMLKFLEGGKQIHCYVLRSGIVMDVSMVNGFI 284

Query: 375 SMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSV 434
             Y KC  +     +F  MV +++VSW +++ G   +    + L +F  M   G +P++ 
Sbjct: 285 DFYFKCHKVQLGRKLFDRMVDKNVVSWTTVIAGCMQNSFHRDALDLFVEMARMGWNPDAF 344

Query: 435 TFLGILSACSHAGLVSRGWEL 455
               +L++C     + +G ++
Sbjct: 345 GCTSVLNSCGSLVALEKGRQV 365


>gi|302774719|ref|XP_002970776.1| hypothetical protein SELMODRAFT_94128 [Selaginella moellendorffii]
 gi|300161487|gb|EFJ28102.1| hypothetical protein SELMODRAFT_94128 [Selaginella moellendorffii]
          Length = 750

 Score =  294 bits (752), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 182/590 (30%), Positives = 302/590 (51%), Gaps = 28/590 (4%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWT 77
           +  Y K G + +A+ +F  +   N+ S+N ++  + QNGRL EAR+ FE+MP +NVV WT
Sbjct: 53  VEMYGKCGSLHDARRVFDSIHSPNIFSWNLLVVAYTQNGRLREARQCFEKMPGKNVVCWT 112

Query: 78  AMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEAR---------KVFN 128
            +I   A +G V  AR +FE+MP+RN V+W +MV  L+  G++ EA+          +  
Sbjct: 113 GLITANAQSGYVLSARGVFEKMPQRNRVTWTAMVWCLVNAGDVIEAKIIHEQLVQMGIAE 172

Query: 129 SMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCL 188
            +P+   I     +  Y+ C  + EA  LF+ +  ++V  WT++I+ Y + G  +E   L
Sbjct: 173 QLPLAKFI-----VQMYLSCGSLDEARNLFDLLPSKDVGMWTAVIAAYAKYGRWQEAIKL 227

Query: 189 FRRMPRK----NVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMING 244
           F  M  +    +V+ W A+I     NG  K SL LF +M+     G   +  +  + ++ 
Sbjct: 228 FETMESRTGPYSVLVWNAIISASFQNGQLKGSLELFWKMR---RQGVRPDSLTLATALDT 284

Query: 245 YIRFGRLEEAQNLFDTVPV----RDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAW 300
               G L E + + + V V     +++  +S++  Y   G + +A  +F  M  R  V W
Sbjct: 285 CAASGNLHEGRMVAELVTVYGLQSNDLVNSSLVHMYGKCGSLDDARRVFDGMAHRGPVVW 344

Query: 301 TAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMK 360
           + MI+   ++    EA  L  EM +  +    ++      A G+   ++ G+++H  +  
Sbjct: 345 SKMIAAYSEHGHCSEAFVLLKEMESAKMVADASSCVAFLQACGSLLALEAGQEVHGWITM 404

Query: 361 TESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKV 420
              E D+ + N L+ MY KCG ++ A+ +F NM  ++  SWN MV  +   G + E ++V
Sbjct: 405 KGLEQDVFVGNALVDMYGKCGSVEEAWAVFDNMKEKNWFSWNFMVEAYCSSGYSTEAIQV 464

Query: 421 FESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLG 480
           F  ML+ G  PN+ TF  +L AC HAG +  G      M   Y + P  EHY   + LLG
Sbjct: 465 FLQMLQEGVKPNAKTFTSVLVACGHAGFIREGILHLVYMSSDYDVVPIAEHYACAVGLLG 524

Query: 481 RAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHV 540
           R+G +KEAEE+V +LP + +  +W AL+ AC    G+ +    AA+ LLE  P  A ++ 
Sbjct: 525 RSGWVKEAEEYVKKLP-DAEASVWDALVTACRI-HGDLDRGRSAAESLLECSPHAARSYA 582

Query: 541 VLCNIYAASGRHVEEHKLRMDMGLKGV-RKVPGCSWLMRNGGIQMFLSGD 589
           V+  +Y A  R  +  ++R  M  KG+  +    S L+ N     F++ D
Sbjct: 583 VVAGLYDALARSDDAARVRETMTSKGLTEERVTSSILVGNTTCHEFITAD 632



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 62/223 (27%), Positives = 110/223 (49%), Gaps = 8/223 (3%)

Query: 239 NSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAV 298
           N ++  Y + G L +A+ +FD++   +  SW  ++  Y   G++  A   F  MP ++ V
Sbjct: 50  NLLVEMYGKCGSLHDARRVFDSIHSPNIFSWNLLVVAYTQNGRLREARQCFEKMPGKNVV 109

Query: 299 AWTAMISGLVQNELFVEATYLFMEMRAHGVPPLN-ATFSVLFGAAGATANIDLGRQIHCV 357
            WT +I+   Q+   + A  +F +M     P  N  T++ +        ++   + IH  
Sbjct: 110 CWTGLITANAQSGYVLSARGVFEKM-----PQRNRVTWTAMVWCLVNAGDVIEAKIIHEQ 164

Query: 358 LMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANET 417
           L++      L L   ++ MY  CG +D A N+F  + S+D+  W +++  ++ +G   E 
Sbjct: 165 LVQMGIAEQLPLAKFIVQMYLSCGSLDEARNLFDLLPSKDVGMWTAVIAAYAKYGRWQEA 224

Query: 418 LKVFESMLESGTHPNSV-TFLGILSACSHAGLVSRGWELFNAM 459
           +K+FE+M ES T P SV  +  I+SA    G +    ELF  M
Sbjct: 225 IKLFETM-ESRTGPYSVLVWNAIISASFQNGQLKGSLELFWKM 266



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 52/183 (28%), Positives = 88/183 (48%), Gaps = 12/183 (6%)

Query: 15  TSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVV 74
           +S +  Y K G +D+A+ +F  M  R  V ++ M++ + ++G  SEA  L +EM    +V
Sbjct: 314 SSLVHMYGKCGSLDDARRVFDGMAHRGPVVWSKMIAAYSEHGHCSEAFVLLKEMESAKMV 373

Query: 75  SWTAMICGLADAGRVCEARKLFEEMP--------ERNVVSWNSMVVGLIRNGELNEARKV 126
           +  +       A     A +  +E+         E++V   N++V    + G + EA  V
Sbjct: 374 ADASSCVAFLQACGSLLALEAGQEVHGWITMKGLEQDVFVGNALVDMYGKCGSVEEAWAV 433

Query: 127 FNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEER----NVVTWTSMISGYCRAGEV 182
           F++M  KN  SWN M+  Y       EAI +F +M +     N  T+TS++     AG +
Sbjct: 434 FDNMKEKNWFSWNFMVEAYCSSGYSTEAIQVFLQMLQEGVKPNAKTFTSVLVACGHAGFI 493

Query: 183 EEG 185
            EG
Sbjct: 494 REG 496



 Score = 62.4 bits (150), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 39/149 (26%), Positives = 75/149 (50%), Gaps = 9/149 (6%)

Query: 341 AAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVS 400
           A G++ ++  G++IH  +      +   L N L+ MY KCG + +A  +F ++ S ++ S
Sbjct: 20  ACGSSRDLIAGKRIHAHIADANLGNYRFLANLLVEMYGKCGSLHDARRVFDSIHSPNIFS 79

Query: 401 WNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMF 460
           WN +V+ ++ +G   E  + FE M       N V + G+++A + +G V     +F  M 
Sbjct: 80  WNLLVVAYTQNGRLREARQCFEKM----PGKNVVCWTGLITANAQSGYVLSARGVFEKMP 135

Query: 461 DVYKIQPGPEHYVSMINLLGRAGKIKEAE 489
              ++      + +M+  L  AG + EA+
Sbjct: 136 QRNRVT-----WTAMVWCLVNAGDVIEAK 159


>gi|449467092|ref|XP_004151259.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like [Cucumis sativus]
          Length = 849

 Score =  294 bits (752), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 195/647 (30%), Positives = 324/647 (50%), Gaps = 66/647 (10%)

Query: 12  VHLTSSITKYSKRGFIDEAKALFQLM-PQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPE 70
           V L S I+ YSK G  ++A ++FQLM   R+++S++AM+S F  N     A   F +M E
Sbjct: 102 VTLNSLISLYSKCGQWEKATSIFQLMGSSRDLISWSAMVSCFANNNMGFRALLTFVDMIE 161

Query: 71  RN------------------------------------VVSWTAMICGLADA-----GRV 89
                                                 + S   + CGL D      G +
Sbjct: 162 NGYYPNEYCFAAATRACSTAEFVSVGDSIFGFVVKTGYLQSDVCVGCGLIDMFVKGRGDL 221

Query: 90  CEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECC 149
             A K+FE+MPERN V+W  M+  L++ G   EA  +F  M +         ++G +  C
Sbjct: 222 VSAFKVFEKMPERNAVTWTLMITRLMQFGYAGEAIDLFLEMILSGYEPDRFTLSGVISAC 281

Query: 150 MMGEAIVLFEEMEERNV--------VTWTSMISGYCRAGEVEEGYC----LFRRMPRKNV 197
              E ++L +++  + +             +I+ Y +   V+   C    +F ++   NV
Sbjct: 282 ANMELLLLGQQLHSQAIRHGLTLDRCVGCCLINMYAKCS-VDGSMCAARKIFDQILDHNV 340

Query: 198 VSWTAMIGGFAWNG-FHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQN 256
            SWTAMI G+   G + +E+L LF   +G+       N  + +S +        L   + 
Sbjct: 341 FSWTAMITGYVQKGGYDEEALDLF---RGMILTHVIPNHFTFSSTLKACANLAALRIGEQ 397

Query: 257 LFDTVPVRDEISWT-----SMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNE 311
           +F T  V+   S       S+I  Y   G++ +A   F  + +++ +++  +I    +N 
Sbjct: 398 VF-THAVKLGFSSVNCVANSLISMYARSGRIDDARKAFDILFEKNLISYNTVIDAYAKNL 456

Query: 312 LFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILEN 371
              EA  LF E+   G+     TF+ L   A +   I  G QIH  ++K+  + +  + N
Sbjct: 457 NSEEALELFNEIEDQGMGASAFTFASLLSGAASIGTIGKGEQIHARVIKSGLKLNQSVCN 516

Query: 372 CLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHP 431
            LISMY++CG I++A+ +F +M  R+++SW S++ GF+ HG A + L++F  MLE G  P
Sbjct: 517 ALISMYSRCGNIESAFQVFEDMEDRNVISWTSIITGFAKHGFATQALELFHKMLEEGVRP 576

Query: 432 NSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEF 491
           N VT++ +LSACSH GLV+ GW+ F +M+  + + P  EHY  M+++LGR+G + EA +F
Sbjct: 577 NLVTYIAVLSACSHVGLVNEGWKHFKSMYTEHGVIPRMEHYACMVDILGRSGSLSEAIQF 636

Query: 492 VLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGR 551
           +  +P++ D  +W   LGAC    GN E+ +HAAK ++E +P +  A+++L N+YA++ +
Sbjct: 637 INSMPYKADALVWRTFLGACRV-HGNLELGKHAAKMIIEQEPHDPAAYILLSNLYASTSK 695

Query: 552 HVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
             E   +R  M  K + K  GCSW+     +  F  GD    + AEI
Sbjct: 696 WDEVSNIRKAMKEKNLIKEAGCSWVEVENKVHKFYVGDTSHPKAAEI 742



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 57/194 (29%), Positives = 95/194 (48%), Gaps = 3/194 (1%)

Query: 265 DEISWTSMIDGYLSVGQVSNAYYLFHNM-PDRDAVAWTAMISGLVQNELFVEATYLFMEM 323
           D ++  S+I  Y   GQ   A  +F  M   RD ++W+AM+S    N +   A   F++M
Sbjct: 100 DSVTLNSLISLYSKCGQWEKATSIFQLMGSSRDLISWSAMVSCFANNNMGFRALLTFVDM 159

Query: 324 RAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTES-ESDLILENCLISMYAKC-G 381
             +G  P    F+    A      + +G  I   ++KT   +SD+ +   LI M+ K  G
Sbjct: 160 IENGYYPNEYCFAAATRACSTAEFVSVGDSIFGFVVKTGYLQSDVCVGCGLIDMFVKGRG 219

Query: 382 VIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILS 441
            + +A+ +F  M  R+ V+W  M+      G A E + +F  M+ SG  P+  T  G++S
Sbjct: 220 DLVSAFKVFEKMPERNAVTWTLMITRLMQFGYAGEAIDLFLEMILSGYEPDRFTLSGVIS 279

Query: 442 ACSHAGLVSRGWEL 455
           AC++  L+  G +L
Sbjct: 280 ACANMELLLLGQQL 293



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 50/150 (33%), Positives = 77/150 (51%), Gaps = 1/150 (0%)

Query: 308 VQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDL 367
           + N    +A      M   G  P   T+S+       T + D+G  +H  L +++ + D 
Sbjct: 42  INNGRLHKAISTLEHMVHQGSHPDLQTYSLFLKKCIRTRSFDIGTLVHEKLTQSDLQLDS 101

Query: 368 ILENCLISMYAKCGVIDNAYNIFSNM-VSRDLVSWNSMVMGFSHHGLANETLKVFESMLE 426
           +  N LIS+Y+KCG  + A +IF  M  SRDL+SW++MV  F+++ +    L  F  M+E
Sbjct: 102 VTLNSLISLYSKCGQWEKATSIFQLMGSSRDLISWSAMVSCFANNNMGFRALLTFVDMIE 161

Query: 427 SGTHPNSVTFLGILSACSHAGLVSRGWELF 456
           +G +PN   F     ACS A  VS G  +F
Sbjct: 162 NGYYPNEYCFAAATRACSTAEFVSVGDSIF 191


>gi|225463844|ref|XP_002265179.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 617

 Score =  294 bits (752), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 169/520 (32%), Positives = 273/520 (52%), Gaps = 16/520 (3%)

Query: 92  ARKLFEEMPERNVVSWNSMVVGL-IRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCM 150
           A  L  ++   N+  +N+++ GL   N +  E   V+  M  K ++  N  I   ++ C 
Sbjct: 77  ALSLLAQLRTPNLPLYNAIIRGLATSNNDSIEGLVVYKQMLSKGIVPDNYTIPFVLKACA 136

Query: 151 MGEAIVLFEEMEER--------NVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTA 202
              A+   EE+  +        +V    +++  Y     +     +F   P++++VSWT 
Sbjct: 137 ESRAVREGEEVHGQAIKMGLASDVYVSNTLMRMYAVCDVIRSARKVFDTSPQRDLVSWTT 196

Query: 203 MIGGFAWNGFHKESLLLFIEMKGICDNGNNCNV----QSCNSMINGYIRFGRLEEAQNLF 258
           MI G+   GF +E + LF EM G     +   +     SC  +  G +R GR      + 
Sbjct: 197 MIQGYVKMGFAREGVGLFFEMCGENLQADGMTLVIVLSSCARL--GDLRLGRKLHRYIIR 254

Query: 259 DTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATY 318
           ++    D     +++D YL  G  + A  +F  MP ++ V+W +MISGL Q   F E+ Y
Sbjct: 255 NSNVNLDVFVGNALVDMYLKCGDANFARKVFQEMPVKNVVSWNSMISGLAQKGQFKESLY 314

Query: 319 LFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYA 378
           +F +M+  GV P + T   +  +      ++LG+ +H  L + +  +D  + N L+ MYA
Sbjct: 315 MFRKMQRLGVKPDDVTLVAVLNSCANLGVLELGKWVHAYLDRNQIRADGFIGNALVDMYA 374

Query: 379 KCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLG 438
           KCG ID A  +F  M  +D+ S+ +M++G + HG   + L +F  M + G  P+ VTF+G
Sbjct: 375 KCGSIDQACWVFQAMNRKDVYSYTAMIVGLAMHGQGGKALDLFSEMPKMGIEPDEVTFVG 434

Query: 439 ILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFE 498
           +L+ACSH GLV  G + F  M  +Y ++P  EHY  M++LLGRAG I EAEEF+  +P E
Sbjct: 435 VLTACSHVGLVEEGRKYFEDMSTIYNLRPQLEHYGCMVDLLGRAGLINEAEEFIRNMPIE 494

Query: 499 PDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKL 558
           PD  + GALLGAC    G  E+ E   K++ +++P    A+V++ NIY+++ R  +  KL
Sbjct: 495 PDAFVLGALLGACKI-HGKVELGESVMKKIEKIEPRKDGAYVLMSNIYSSANRWRDALKL 553

Query: 559 RMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
           R  M  + + K PGCS +  +G I  F  GDK   ++ EI
Sbjct: 554 RKTMKERNLEKTPGCSSIELDGVIHEFQKGDKSHPKIKEI 593



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 113/444 (25%), Positives = 182/444 (40%), Gaps = 82/444 (18%)

Query: 58  LSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLI-- 115
           +  AR++F+  P+R++VSWT MI G    G   E   LF EM   N+ +    +V ++  
Sbjct: 176 IRSARKVFDTSPQRDLVSWTTMIQGYVKMGFAREGVGLFFEMCGENLQADGMTLVIVLSS 235

Query: 116 --RNGELNEARK-----VFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVT 168
             R G+L   RK     + NS    +V   NA++  Y++C     A  +F+EM  +NVV+
Sbjct: 236 CARLGDLRLGRKLHRYIIRNSNVNLDVFVGNALVDMYLKCGDANFARKVFQEMPVKNVVS 295

Query: 169 WTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICD 228
           W SMISG  + G+ +E   +FR+M R  V                K   +  + +   C 
Sbjct: 296 WNSMISGLAQKGQFKESLYMFRKMQRLGV----------------KPDDVTLVAVLNSCA 339

Query: 229 NGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVR-DEISWTSMIDGYLSVGQVSNAYY 287
           N              G +  G+   A    D   +R D     +++D Y   G +  A +
Sbjct: 340 N-------------LGVLELGKWVHA--YLDRNQIRADGFIGNALVDMYAKCGSIDQACW 384

Query: 288 LFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATAN 347
           +F  M  +D  ++TAMI GL  +    +A  LF EM   G+ P   TF  +  A      
Sbjct: 385 VFQAMNRKDVYSYTAMIVGLAMHGQGGKALDLFSEMPKMGIEPDEVTFVGVLTACSHVGL 444

Query: 348 IDLGRQIHCVLMKTESESDLILEN--CLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMV 405
           ++ GR+ +   M T       LE+  C++ +  + G+I+ A     NM            
Sbjct: 445 VEEGRK-YFEDMSTIYNLRPQLEHYGCMVDLLGRAGLINEAEEFIRNM------------ 491

Query: 406 MGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKI 465
                                    P++     +L AC   G V  G  +   M  + KI
Sbjct: 492 ----------------------PIEPDAFVLGALLGACKIHGKVELGESV---MKKIEKI 526

Query: 466 QPGPE-HYVSMINLLGRAGKIKEA 488
           +P  +  YV M N+   A + ++A
Sbjct: 527 EPRKDGAYVLMSNIYSSANRWRDA 550



 Score = 82.0 bits (201), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 61/234 (26%), Positives = 112/234 (47%), Gaps = 16/234 (6%)

Query: 46  NAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVV 105
           NA++  +L+ G  + AR++F+EMP +NVVSW +MI GLA  G+  E+  +F +M    V 
Sbjct: 266 NALVDMYLKCGDANFARKVFQEMPVKNVVSWNSMISGLAQKGQFKESLYMFRKMQRLGVK 325

Query: 106 SWNSMVV---------GLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIV 156
             +  +V         G++  G+   A    N +     I  NA++  Y +C  + +A  
Sbjct: 326 PDDVTLVAVLNSCANLGVLELGKWVHAYLDRNQIRADGFIG-NALVDMYAKCGSIDQACW 384

Query: 157 LFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNV----VSWTAMIGGFAWNGF 212
           +F+ M  ++V ++T+MI G    G+  +   LF  MP+  +    V++  ++   +  G 
Sbjct: 385 VFQAMNRKDVYSYTAMIVGLAMHGQGGKALDLFSEMPKMGIEPDEVTFVGVLTACSHVGL 444

Query: 213 HKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDE 266
            +E    F +M  I +         C  M++   R G + EA+     +P+  +
Sbjct: 445 VEEGRKYFEDMSTIYNLRPQLEHYGC--MVDLLGRAGLINEAEEFIRNMPIEPD 496



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 61/188 (32%), Positives = 95/188 (50%), Gaps = 14/188 (7%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNV---- 73
           +  Y K G  + A+ +FQ MP +NVVS+N+M+SG  Q G+  E+  +F +M    V    
Sbjct: 269 VDMYLKCGDANFARKVFQEMPVKNVVSWNSMISGLAQKGQFKESLYMFRKMQRLGVKPDD 328

Query: 74  VSWTAMICGLADAGRVCEARKLFEEMPERNVVSW-----NSMVVGLIRNGELNEARKVFN 128
           V+  A++   A+ G V E  K      +RN +       N++V    + G +++A  VF 
Sbjct: 329 VTLVAVLNSCANLG-VLELGKWVHAYLDRNQIRADGFIGNALVDMYAKCGSIDQACWVFQ 387

Query: 129 SMPIKNVISWNAMIAGYVECCMMGEAIVLFEEME----ERNVVTWTSMISGYCRAGEVEE 184
           +M  K+V S+ AMI G       G+A+ LF EM     E + VT+  +++     G VEE
Sbjct: 388 AMNRKDVYSYTAMIVGLAMHGQGGKALDLFSEMPKMGIEPDEVTFVGVLTACSHVGLVEE 447

Query: 185 GYCLFRRM 192
           G   F  M
Sbjct: 448 GRKYFEDM 455


>gi|356546093|ref|XP_003541466.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g33680-like [Glycine max]
          Length = 775

 Score =  293 bits (751), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 182/573 (31%), Positives = 301/573 (52%), Gaps = 45/573 (7%)

Query: 40  RNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEM 99
            +V + +++L+ + + G + EAR LF+EMPERN VSW  MI G A      EA +LF+ M
Sbjct: 149 HDVFAASSLLNMYCKTGLVFEARDLFDEMPERNAVSWATMISGYASQELADEAFELFKLM 208

Query: 100 ------PERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKN-----VISWNAMIAGYVEC 148
                    N   + S++  L     +N  R+V +S+ +KN     V   NA++  YV+C
Sbjct: 209 RHEEKGKNENEFVFTSVLSALTCYMLVNTGRQV-HSLAMKNGLVCIVSVANALVTMYVKC 267

Query: 149 CMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFA 208
             + +A+  FE    +N +TW++M++G+ + G+ ++   LF  M +   +     + G  
Sbjct: 268 GSLEDALKTFELSGNKNSITWSAMVTGFAQFGDSDKALKLFYDMHQSGELPSEFTLVGVI 327

Query: 209 WNGFHKESLLLFIEMKGICDN-GNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEI 267
                  +++   +M G     G    +   +++++ Y + G + +A+  F+ +   D +
Sbjct: 328 NACSDACAIVEGRQMHGYSLKLGYELQLYVLSALVDMYAKCGSIVDARKGFECIQQPDVV 387

Query: 268 SWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHG 327
            WTS+I GY                               VQN  +  A  L+ +M+  G
Sbjct: 388 LWTSIITGY-------------------------------VQNGDYEGALNLYGKMQLGG 416

Query: 328 VPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAY 387
           V P + T + +  A    A +D G+Q+H  ++K     ++ + + L +MYAKCG +D+ Y
Sbjct: 417 VIPNDLTMASVLKACSNLAALDQGKQMHAGIIKYNFSLEIPIGSALSAMYAKCGSLDDGY 476

Query: 388 NIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAG 447
            IF  M +RD++SWN+M+ G S +G  NE L++FE M   GT P++VTF+ +LSACSH G
Sbjct: 477 RIFWRMPARDVISWNAMISGLSQNGRGNEGLELFEKMCLEGTKPDNVTFVNLLSACSHMG 536

Query: 448 LVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGAL 507
           LV RGW  F  MFD + I P  EHY  M+++L RAGK+ EA+EF+     +    +W  L
Sbjct: 537 LVDRGWVYFKMMFDEFNIAPTVEHYACMVDILSRAGKLHEAKEFIESATVDHGLCLWRIL 596

Query: 508 LGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGV 567
           L A      + ++  +A ++L+EL  L + A+V+L +IY A G+  +  ++R  M  +GV
Sbjct: 597 LAASK-NHRDYDLGAYAGEKLMELGSLESSAYVLLSSIYTALGKWEDVERVRGMMKARGV 655

Query: 568 RKVPGCSWLMRNGGIQMFLSGDKIPAQVAEILL 600
            K PGCSW+       +F+ GD +  Q+ EI L
Sbjct: 656 TKEPGCSWIELKSLTHVFVVGDNMHPQIDEIRL 688



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 127/523 (24%), Positives = 224/523 (42%), Gaps = 96/523 (18%)

Query: 46  NAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADA---GRVCEARKLFEE--MP 100
           N++++ + +    S+A  +F+ +  ++VVSW  +I   +             LF +  M 
Sbjct: 49  NSLINLYAKCSHFSKANLVFDSINNKDVVSWNCLINAFSQQQAHAPSLHVMHLFRQLVMA 108

Query: 101 ERNVVSWNSMVVGLIRNGE-LNEAR--KVFNSMPIK-----NVISWNAMIAGYVECCMMG 152
            + +V     + G+      L+++R  +  +++ +K     +V + ++++  Y +  ++ 
Sbjct: 109 HKTIVPNAHTLTGVFTAASTLSDSRAGRQAHALAVKTACSHDVFAASSLLNMYCKTGLVF 168

Query: 153 EAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRM------PRKNVVSWTAMIGG 206
           EA  LF+EM ERN V+W +MISGY      +E + LF+ M        +N   +T+++  
Sbjct: 169 EARDLFDEMPERNAVSWATMISGYASQELADEAFELFKLMRHEEKGKNENEFVFTSVLSA 228

Query: 207 FAW-----NGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTV 261
                    G    SL +         NG  C V   N+++  Y++ G LE+A   F+  
Sbjct: 229 LTCYMLVNTGRQVHSLAM--------KNGLVCIVSVANALVTMYVKCGSLEDALKTFELS 280

Query: 262 PVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFM 321
             ++ I+W++M+ G+   G             D D                  +A  LF 
Sbjct: 281 GNKNSITWSAMVTGFAQFG-------------DSD------------------KALKLFY 309

Query: 322 EMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCG 381
           +M   G  P   T   +  A      I  GRQ+H   +K   E  L + + L+ MYAKCG
Sbjct: 310 DMHQSGELPSEFTLVGVINACSDACAIVEGRQMHGYSLKLGYELQLYVLSALVDMYAKCG 369

Query: 382 VIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILS 441
            I +A   F  +   D+V W S++ G+  +G     L ++  M   G  PN +T   +L 
Sbjct: 370 SIVDARKGFECIQQPDVVLWTSIITGYVQNGDYEGALNLYGKMQLGGVIPNDLTMASVLK 429

Query: 442 ACS-----------HAGLVSRGWEL-------FNAMF-------DVYKI---QPGPE--H 471
           ACS           HAG++   + L        +AM+       D Y+I    P  +   
Sbjct: 430 ACSNLAALDQGKQMHAGIIKYNFSLEIPIGSALSAMYAKCGSLDDGYRIFWRMPARDVIS 489

Query: 472 YVSMINLLGRAGKIKEAEEFVLRLPFE---PDHRIWGALLGAC 511
           + +MI+ L + G+  E  E   ++  E   PD+  +  LL AC
Sbjct: 490 WNAMISGLSQNGRGNEGLELFEKMCLEGTKPDNVTFVNLLSAC 532



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 120/488 (24%), Positives = 202/488 (41%), Gaps = 78/488 (15%)

Query: 15  TSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEM------ 68
           +S +  Y K G + EA+ LF  MP+RN VS+  M+SG+       EA  LF+ M      
Sbjct: 155 SSLLNMYCKTGLVFEARDLFDEMPERNAVSWATMISGYASQELADEAFELFKLMRHEEKG 214

Query: 69  PERNVVSWTAMICGLA-----DAGR-----------VC-------------------EAR 93
              N   +T+++  L      + GR           VC                   +A 
Sbjct: 215 KNENEFVFTSVLSALTCYMLVNTGRQVHSLAMKNGLVCIVSVANALVTMYVKCGSLEDAL 274

Query: 94  KLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGE 153
           K FE    +N ++W++MV G  + G+ ++A K+F  M     +     + G +  C    
Sbjct: 275 KTFELSGNKNSITWSAMVTGFAQFGDSDKALKLFYDMHQSGELPSEFTLVGVINACSDAC 334

Query: 154 AIVLFEEME--------ERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIG 205
           AIV   +M         E  +   ++++  Y + G + +    F  + + +VV WT++I 
Sbjct: 335 AIVEGRQMHGYSLKLGYELQLYVLSALVDMYAKCGSIVDARKGFECIQQPDVVLWTSIIT 394

Query: 206 GFAWNGFHKESLLLFIEMK--GICDN-----------GNNCNVQSCNSMINGYIRFGRLE 252
           G+  NG ++ +L L+ +M+  G+  N            N   +     M  G I++    
Sbjct: 395 GYVQNGDYEGALNLYGKMQLGGVIPNDLTMASVLKACSNLAALDQGKQMHAGIIKY---- 450

Query: 253 EAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNEL 312
              N    +P+   +S       Y   G + + Y +F  MP RD ++W AMISGL QN  
Sbjct: 451 ---NFSLEIPIGSALSAM-----YAKCGSLDDGYRIFWRMPARDVISWNAMISGLSQNGR 502

Query: 313 FVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILEN- 371
             E   LF +M   G  P N TF  L  A      +D G  ++  +M  E      +E+ 
Sbjct: 503 GNEGLELFEKMCLEGTKPDNVTFVNLLSACSHMGLVDRG-WVYFKMMFDEFNIAPTVEHY 561

Query: 372 -CLISMYAKCGVIDNAYN-IFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGT 429
            C++ + ++ G +  A   I S  V   L  W  ++    +H   +      E ++E G+
Sbjct: 562 ACMVDILSRAGKLHEAKEFIESATVDHGLCLWRILLAASKNHRDYDLGAYAGEKLMELGS 621

Query: 430 HPNSVTFL 437
             +S   L
Sbjct: 622 LESSAYVL 629



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 61/216 (28%), Positives = 106/216 (49%), Gaps = 23/216 (10%)

Query: 9   SLVVHLTSSITK-YSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEE 67
           SL + + S+++  Y+K G +D+   +F  MP R+V+S+NAM+SG  QNGR +E   LFE+
Sbjct: 453 SLEIPIGSALSAMYAKCGSLDDGYRIFWRMPARDVISWNAMISGLSQNGRGNEGLELFEK 512

Query: 68  M------PER----NVVSWTAMICGLADAGRVCEARKLFEEMP-ERNVVSWNSMVVGLIR 116
           M      P+     N++S  + + GL D G V   + +F+E      V  +  MV  L R
Sbjct: 513 MCLEGTKPDNVTFVNLLSACSHM-GLVDRGWV-YFKMMFDEFNIAPTVEHYACMVDILSR 570

Query: 117 NGELNEARKVFNSMPIKNVIS-WNAMIAG------YVECCMMGEAIVLFEEMEERNVVTW 169
            G+L+EA++   S  + + +  W  ++A       Y      GE ++    +E    V  
Sbjct: 571 AGKLHEAKEFIESATVDHGLCLWRILLAASKNHRDYDLGAYAGEKLMELGSLESSAYVLL 630

Query: 170 TSMISGYCRAGEVE--EGYCLFRRMPRKNVVSWTAM 203
           +S+ +   +  +VE   G    R + ++   SW  +
Sbjct: 631 SSIYTALGKWEDVERVRGMMKARGVTKEPGCSWIEL 666



 Score = 56.2 bits (134), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 73/155 (47%), Gaps = 14/155 (9%)

Query: 351 GRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSH 410
           GR +H  ++ T S S   + N LI++YAKC     A  +F ++ ++D+VSWN ++  FS 
Sbjct: 29  GRALHARILVTGSFSSTQIANSLINLYAKCSHFSKANLVFDSINNKDVVSWNCLINAFSQ 88

Query: 411 ---HGLANETLKVFES--MLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKI 465
              H  +   + +F    M      PN+ T  G+ +A S     SR     +A+     +
Sbjct: 89  QQAHAPSLHVMHLFRQLVMAHKTIVPNAHTLTGVFTAASTLS-DSRAGRQAHAL----AV 143

Query: 466 QPGPEHYV----SMINLLGRAGKIKEAEEFVLRLP 496
           +    H V    S++N+  + G + EA +    +P
Sbjct: 144 KTACSHDVFAASSLLNMYCKTGLVFEARDLFDEMP 178


>gi|347954546|gb|AEP33773.1| organelle transcript processing 82, partial [Lobularia maritima]
          Length = 695

 Score =  293 bits (751), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 184/558 (32%), Positives = 293/558 (52%), Gaps = 24/558 (4%)

Query: 58  LSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPE----RNVVSWNSMVVG 113
           L  A  +FE + E N++ W  M  G A +     A  L+  M       N  ++  ++  
Sbjct: 38  LPYAISVFETIQEPNLLIWNTMFRGHALSSDPVSALYLYVCMISLGLLPNCYTFPFLLKS 97

Query: 114 LIRNGELNEARKVFNSMPIK-----NVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVT 168
             ++    E +++   + +K     ++    ++I+ YV+   + +A  +F++   R+VV+
Sbjct: 98  CAKSKAFREGQQIHGHV-LKLGYDLDLYVHTSLISMYVQNGRLEDARKVFDQSSHRDVVS 156

Query: 169 WTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICD 228
           +T++I+GY   G +     +F  +P K+VVSW AMI G+A  G +KE+L LF EM     
Sbjct: 157 YTALITGYASKGYIASAQKMFDEIPIKDVVSWNAMISGYAETGNNKEALELFKEMMKTNV 216

Query: 229 NGNNCNVQSCNSMI--NGYIRFGRLEEAQNLFDTVPVRDEISWT-SMIDGYLSVGQVSNA 285
             +   + S  S    +  I  GR  +  +  D       +    ++ID Y+  G+V  A
Sbjct: 217 RPDESTMVSVVSACAQSASIELGR--QVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETA 274

Query: 286 YYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGAT 345
             LF  +  +D ++W  +I G     L+ EA  LF EM   G  P + T   +  A    
Sbjct: 275 CGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSILPACAHL 334

Query: 346 ANIDLGRQIHCVLMK-----TESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVS 400
             I++GR IH  + K       + S       LI MYAKCG I+ A  +F ++++R L S
Sbjct: 335 GAIEIGRWIHVYINKRLKGVANASSH---RTSLIDMYAKCGDIEAAQQVFDSILNRSLSS 391

Query: 401 WNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMF 460
           WN+M+ GF+ HG AN    +F  M ++   P+ +TF+G+LSACSH+G++  G  +F +M 
Sbjct: 392 WNAMIFGFAMHGRANAAFDIFSRMRKNEIEPDDITFVGLLSACSHSGMLDLGRHIFRSMK 451

Query: 461 DVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEI 520
           + YKI P  EHY  MI+LLG +G  KEAEE +  +  EPD  IW +LL AC    GN E+
Sbjct: 452 EDYKITPKLEHYGCMIDLLGHSGLFKEAEEMINTMEMEPDGVIWCSLLKACKM-HGNVEL 510

Query: 521 AEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNG 580
            E  A+ L++++P N  ++V+L NIYA +GR  E  K+R  +  KG++KVPGCS +  + 
Sbjct: 511 GESYAQNLIKIEPKNPGSYVLLSNIYATAGRWNEVAKIRALLNDKGMKKVPGCSSIEIDS 570

Query: 581 GIQMFLSGDKIPAQVAEI 598
            +  F+ GDK   +  EI
Sbjct: 571 VVHEFIIGDKFHPRNREI 588



 Score =  182 bits (463), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 110/364 (30%), Positives = 191/364 (52%), Gaps = 15/364 (4%)

Query: 139 NAMIAGYVECCMMGE-------AIVLFEEMEERNVVTWTSMISGYCRAGE-VEEGY---C 187
           N  ++  +E C++         AI +FE ++E N++ W +M  G+  + + V   Y   C
Sbjct: 19  NYALSKLIEFCVLSPHFDGLPYAISVFETIQEPNLLIWNTMFRGHALSSDPVSALYLYVC 78

Query: 188 LFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIR 247
           +       N  ++  ++   A +   +E   +   +  +   G + ++    S+I+ Y++
Sbjct: 79  MISLGLLPNCYTFPFLLKSCAKSKAFREGQQIHGHVLKL---GYDLDLYVHTSLISMYVQ 135

Query: 248 FGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGL 307
            GRLE+A+ +FD    RD +S+T++I GY S G +++A  +F  +P +D V+W AMISG 
Sbjct: 136 NGRLEDARKVFDQSSHRDVVSYTALITGYASKGYIASAQKMFDEIPIKDVVSWNAMISGY 195

Query: 308 VQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDL 367
            +     EA  LF EM    V P  +T   +  A   +A+I+LGRQ+H  +      S+L
Sbjct: 196 AETGNNKEALELFKEMMKTNVRPDESTMVSVVSACAQSASIELGRQVHSWIDDHGFGSNL 255

Query: 368 ILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLES 427
            + N LI +Y KCG ++ A  +F  +  +D++SWN+++ G++H  L  E L +F+ ML S
Sbjct: 256 KIVNALIDLYIKCGEVETACGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRS 315

Query: 428 GTHPNSVTFLGILSACSHAGLVSRG-WELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIK 486
           G  PN VT L IL AC+H G +  G W        +  +     H  S+I++  + G I+
Sbjct: 316 GESPNDVTMLSILPACAHLGAIEIGRWIHVYINKRLKGVANASSHRTSLIDMYAKCGDIE 375

Query: 487 EAEE 490
            A++
Sbjct: 376 AAQQ 379



 Score =  169 bits (428), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 118/384 (30%), Positives = 190/384 (49%), Gaps = 19/384 (4%)

Query: 45  YNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNV 104
           + +++S ++QNGRL +AR++F++   R+VVS+TA+I G A  G +  A+K+F+E+P ++V
Sbjct: 126 HTSLISMYVQNGRLEDARKVFDQSSHRDVVSYTALITGYASKGYIASAQKMFDEIPIKDV 185

Query: 105 VSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEE- 163
           VSWN+M+ G    G   EA ++F  M   NV    + +   V  C    +I L  ++   
Sbjct: 186 VSWNAMISGYAETGNNKEALELFKEMMKTNVRPDESTMVSVVSACAQSASIELGRQVHSW 245

Query: 164 -------RNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKES 216
                   N+    ++I  Y + GEVE    LF  +  K+V+SW  +IGG+     +KE+
Sbjct: 246 IDDHGFGSNLKIVNALIDLYIKCGEVETACGLFEGLSYKDVISWNTLIGGYTHMNLYKEA 305

Query: 217 LLLFIEMKGICDNGNNCNVQS----CNSMINGYIRFGRLEEAQNLFDTVPVRDEISW-TS 271
           LLLF EM    ++ N+  + S    C  +  G I  GR            V +  S  TS
Sbjct: 306 LLLFQEMLRSGESPNDVTMLSILPACAHL--GAIEIGRWIHVYINKRLKGVANASSHRTS 363

Query: 272 MIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPL 331
           +ID Y   G +  A  +F ++ +R   +W AMI G   +     A  +F  MR + + P 
Sbjct: 364 LIDMYAKCGDIEAAQQVFDSILNRSLSSWNAMIFGFAMHGRANAAFDIFSRMRKNEIEPD 423

Query: 332 NATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILEN--CLISMYAKCGVIDNAYNI 389
           + TF  L  A   +  +DLGR I    MK + +    LE+  C+I +    G+   A  +
Sbjct: 424 DITFVGLLSACSHSGMLDLGRHIF-RSMKEDYKITPKLEHYGCMIDLLGHSGLFKEAEEM 482

Query: 390 FSNM-VSRDLVSWNSMVMGFSHHG 412
            + M +  D V W S++     HG
Sbjct: 483 INTMEMEPDGVIWCSLLKACKMHG 506


>gi|449440359|ref|XP_004137952.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g37310-like [Cucumis sativus]
          Length = 595

 Score =  293 bits (751), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 168/554 (30%), Positives = 291/554 (52%), Gaps = 19/554 (3%)

Query: 48  MLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEM-------- 99
           ++S + ++G + +A  +F ++P +N+ SW A++          +  KLF  +        
Sbjct: 44  LISFYSKSGSIRDAYNVFGKIPRKNIFSWNALLISYTLHNMHTDLLKLFSSLVNSNSTDV 103

Query: 100 -PERNVVSWN-SMVVGLIRNGELNEARKVFNSMPIK----NVISWNAMIAGYVECCMMGE 153
            P+R  V+     +  L  N  L  A++V + +  +    ++   NA+I  Y  C  +  
Sbjct: 104 KPDRFTVTCALKALASLFSNSGL--AKEVHSFILRRGLEYDIFVVNALITFYSRCDELVL 161

Query: 154 AIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFH 213
           A ++F+ M ER++V+W +M++GY + G  E+   LFR M     V   A+          
Sbjct: 162 ARIMFDRMPERDIVSWNAMLAGYSQGGSYEKCKELFRVMLSSLEVKPNALTAVSVLQACA 221

Query: 214 KESLLLF-IEMKGICDNGN-NCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTS 271
           + + L+F IE+    +      +V   N++I  Y + G L+ A+ LF+ +  +D I++ S
Sbjct: 222 QSNDLIFGIEVHRFVNESQIKMDVSLWNAVIGLYAKCGSLDYARELFEEMLEKDAITYCS 281

Query: 272 MIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPL 331
           MI GY+  G V+ A  LF          W A+ISGLVQN     A  +F  M++HG  P 
Sbjct: 282 MISGYMVHGFVNQAMDLFREQERPRLPTWNAVISGLVQNNRQEGAVDIFRAMQSHGCRPN 341

Query: 332 NATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFS 391
             T + +       + +  G++IH   ++   + ++ +   +I  YAKCG +  A  +F 
Sbjct: 342 TVTLASILPVFSHFSTLKGGKEIHGYAIRNTYDRNIYVATAIIDSYAKCGYLHGAQLVFD 401

Query: 392 NMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSR 451
            +  R L++W S++  ++ HG AN  L +F  ML +G  P+ VTF  +L+AC+H+G +  
Sbjct: 402 QIKGRSLIAWTSIISAYAVHGDANVALSLFYEMLTNGIQPDQVTFTSVLAACAHSGELDE 461

Query: 452 GWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGAC 511
            W++FN +   Y IQP  EHY  M+ +L RAGK+ +A EF+ ++P EP  ++WGALL   
Sbjct: 462 AWKIFNVLLPEYGIQPLVEHYACMVGVLSRAGKLSDAVEFISKMPLEPTAKVWGALLNGA 521

Query: 512 GFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVP 571
               G+ E+ ++   RL E++P N   +V++ N+Y+ SGR  +   +R  M    ++K+P
Sbjct: 522 SVA-GDVELGKYVFDRLFEIEPENTGNYVIMANLYSQSGRWKDADTIRDLMKEVRLKKIP 580

Query: 572 GCSWLMRNGGIQMF 585
           G SW+  +GG+Q F
Sbjct: 581 GNSWIETSGGMQRF 594



 Score =  148 bits (373), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 120/469 (25%), Positives = 212/469 (45%), Gaps = 61/469 (13%)

Query: 39  QRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEE 98
           + ++   NA+++ + +   L  AR +F+ MPER++VSW AM+ G +  G   + ++LF  
Sbjct: 140 EYDIFVVNALITFYSRCDELVLARIMFDRMPERDIVSWNAMLAGYSQGGSYEKCKELFRV 199

Query: 99  M-----PERNVVSWNSMVVGLIRNGEL---NEARKVFNSMPIKNVIS-WNAMIAGYVECC 149
           M      + N ++  S++    ++ +L    E  +  N   IK  +S WNA+I  Y +C 
Sbjct: 200 MLSSLEVKPNALTAVSVLQACAQSNDLIFGIEVHRFVNESQIKMDVSLWNAVIGLYAKCG 259

Query: 150 MMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAW 209
            +  A  LFEEM E++ +T+ SMISGY   G V +   LFR   R  + +W A+I G   
Sbjct: 260 SLDYARELFEEMLEKDAITYCSMISGYMVHGFVNQAMDLFREQERPRLPTWNAVISGLVQ 319

Query: 210 NGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQ--------NLFDTV 261
           N   + ++ +F  M+    +G   N  +  S++  +  F  L+  +        N +D  
Sbjct: 320 NNRQEGAVDIFRAMQS---HGCRPNTVTLASILPVFSHFSTLKGGKEIHGYAIRNTYD-- 374

Query: 262 PVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFM 321
             R+    T++ID Y   G +  A  +F  +  R  +AWT++IS    +     A  LF 
Sbjct: 375 --RNIYVATAIIDSYAKCGYLHGAQLVFDQIKGRSLIAWTSIISAYAVHGDANVALSLFY 432

Query: 322 EMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILE-NCLISMYAKC 380
           EM  +G+ P   TF+ +  A   +  +D   +I  VL+       L+    C++ + ++ 
Sbjct: 433 EMLTNGIQPDQVTFTSVLAACAHSGELDEAWKIFNVLLPEYGIQPLVEHYACMVGVLSRA 492

Query: 381 GVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGIL 440
           G + +A    S M                                     P +  +  +L
Sbjct: 493 GKLSDAVEFISKM----------------------------------PLEPTAKVWGALL 518

Query: 441 SACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAE 489
           +  S AG V  G  +F+ +F++     G  +YV M NL  ++G+ K+A+
Sbjct: 519 NGASVAGDVELGKYVFDRLFEIEPENTG--NYVIMANLYSQSGRWKDAD 565



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 70/289 (24%), Positives = 139/289 (48%), Gaps = 17/289 (5%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWT 77
           I  Y+K G +D A+ LF+ M +++ ++Y +M+SG++ +G +++A  LF E     + +W 
Sbjct: 252 IGLYAKCGSLDYARELFEEMLEKDAITYCSMISGYMVHGFVNQAMDLFREQERPRLPTWN 311

Query: 78  AMICGLADAGRVCEARKLFEEMPER----NVVSWNSMV-----VGLIRNGELNEARKVFN 128
           A+I GL    R   A  +F  M       N V+  S++        ++ G+      + N
Sbjct: 312 AVISGLVQNNRQEGAVDIFRAMQSHGCRPNTVTLASILPVFSHFSTLKGGKEIHGYAIRN 371

Query: 129 SMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCL 188
           +   +N+    A+I  Y +C  +  A ++F++++ R+++ WTS+IS Y   G+      L
Sbjct: 372 TYD-RNIYVATAIIDSYAKCGYLHGAQLVFDQIKGRSLIAWTSIISAYAVHGDANVALSL 430

Query: 189 FRRMPRKNV----VSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMING 244
           F  M    +    V++T+++   A +G   E+  +F  +  + + G    V+    M+  
Sbjct: 431 FYEMLTNGIQPDQVTFTSVLAACAHSGELDEAWKIFNVL--LPEYGIQPLVEHYACMVGV 488

Query: 245 YIRFGRLEEAQNLFDTVPVRDEIS-WTSMIDGYLSVGQVSNAYYLFHNM 292
             R G+L +A      +P+      W ++++G    G V    Y+F  +
Sbjct: 489 LSRAGKLSDAVEFISKMPLEPTAKVWGALLNGASVAGDVELGKYVFDRL 537



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 86/354 (24%), Positives = 159/354 (44%), Gaps = 57/354 (16%)

Query: 7   PKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAM-----LSGFLQNGRL--- 58
           P+  +V   + +  YS+ G  ++ K LF++M     V  NA+     L    Q+  L   
Sbjct: 170 PERDIVSWNAMLAGYSQGGSYEKCKELFRVMLSSLEVKPNALTAVSVLQACAQSNDLIFG 229

Query: 59  SEARRLFEEMPERNVVS-WTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRN 117
            E  R   E   +  VS W A+I   A  G +  AR+LFEEM E++ +++ SM+ G + +
Sbjct: 230 IEVHRFVNESQIKMDVSLWNAVIGLYAKCGSLDYARELFEEMLEKDAITYCSMISGYMVH 289

Query: 118 GELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEME--------------- 162
           G +N+A  +F       + +WNA+I+G V+      A+ +F  M+               
Sbjct: 290 GFVNQAMDLFREQERPRLPTWNAVISGLVQNNRQEGAVDIFRAMQSHGCRPNTVTLASIL 349

Query: 163 ------------------------ERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVV 198
                                   +RN+   T++I  Y + G +     +F ++  ++++
Sbjct: 350 PVFSHFSTLKGGKEIHGYAIRNTYDRNIYVATAIIDSYAKCGYLHGAQLVFDQIKGRSLI 409

Query: 199 SWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLF 258
           +WT++I  +A +G    +L LF EM     NG   +  +  S++      G L+EA  +F
Sbjct: 410 AWTSIISAYAVHGDANVALSLFYEM---LTNGIQPDQVTFTSVLAACAHSGELDEAWKIF 466

Query: 259 DTV----PVRDEISWTSMIDGYLS-VGQVSNAYYLFHNMP-DRDAVAWTAMISG 306
           + +     ++  +   + + G LS  G++S+A      MP +  A  W A+++G
Sbjct: 467 NVLLPEYGIQPLVEHYACMVGVLSRAGKLSDAVEFISKMPLEPTAKVWGALLNG 520



 Score = 55.8 bits (133), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 50/188 (26%), Positives = 98/188 (52%), Gaps = 21/188 (11%)

Query: 15  TSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNV- 73
           T+ I  Y+K G++  A+ +F  +  R+++++ +++S +  +G  + A  LF EM    + 
Sbjct: 381 TAIIDSYAKCGYLHGAQLVFDQIKGRSLIAWTSIISAYAVHGDANVALSLFYEMLTNGIQ 440

Query: 74  ---VSWTAMICGLADAGRVCEARKLFEE-MPERN----VVSWNSMVVGLIRNGELNEARK 125
              V++T+++   A +G + EA K+F   +PE      V  +  MV  L R G+L++A +
Sbjct: 441 PDQVTFTSVLAACAHSGELDEAWKIFNVLLPEYGIQPLVEHYACMVGVLSRAGKLSDAVE 500

Query: 126 VFNSMPIKNVIS-WNAM-----IAGYVECCMMGEAIV--LFEEMEERNVVTWTSMISGYC 177
             + MP++     W A+     +AG VE   +G+ +   LF E+E  N   +  M + Y 
Sbjct: 501 FISKMPLEPTAKVWGALLNGASVAGDVE---LGKYVFDRLF-EIEPENTGNYVIMANLYS 556

Query: 178 RAGEVEEG 185
           ++G  ++ 
Sbjct: 557 QSGRWKDA 564


>gi|242038427|ref|XP_002466608.1| hypothetical protein SORBIDRAFT_01g010975 [Sorghum bicolor]
 gi|241920462|gb|EER93606.1| hypothetical protein SORBIDRAFT_01g010975 [Sorghum bicolor]
          Length = 752

 Score =  293 bits (751), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 181/598 (30%), Positives = 300/598 (50%), Gaps = 74/598 (12%)

Query: 44  SYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERN 103
           +Y+ M+S  ++ G ++ ARRLF+ MPE++VVS+T M+  L   G V +A KL+E  P  +
Sbjct: 156 TYDFMVSEHVKAGDIASARRLFDGMPEKSVVSYTTMVDALMKRGSVKDAVKLYERCPLYS 215

Query: 104 VVSWNSMVVGLIRNGELNEARKVFNSMPIKNV---------------------------- 135
           V  + +M+ G +RN    +A  VF  M   +V                            
Sbjct: 216 VAFFTAMIAGFVRNELHKDAFPVFRKMLRCSVRPNVVTLICVIKACVGAGEFDLAMGVVG 275

Query: 136 --ISWN----------AMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVE 183
             I WN          ++I  Y+       A  +F++ME R+VV+WT+++  Y   G++E
Sbjct: 276 LAIKWNLFEKSIEVHNSLITLYLRMGDAAAAHRVFDDMEVRDVVSWTALLDVYAELGDLE 335

Query: 184 EGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGI-CDNGNNC---NVQSCN 239
               +   MP +N VSW+ +I      G   E+L L+ +M    C    +C    + +C 
Sbjct: 336 GARRVLDAMPERNEVSWSTLIARHEQKGDSAEALKLYSQMLAEGCRPNISCFSSVLSACA 395

Query: 240 SM----------------------------INGYIRFGRLEEAQNLFDTVPVRDEISWTS 271
           ++                            I+ Y +  +  +AQ +F+++P ++ + W S
Sbjct: 396 TLHDLRGGTRIHANALKMGFSSSLFVSSSLIDMYCKCKQCTDAQRIFNSLPEKNTVCWNS 455

Query: 272 MIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPL 331
           +I GY   G++  A  LF  MP R+A +W  MISG  +N  F +A   F  M A G  P 
Sbjct: 456 LISGYSWNGKMVEAEELFKKMPARNAASWNTMISGYAENRRFGDALNYFCAMLASGQIPG 515

Query: 332 NATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFS 391
             T S +  A     ++++G+ +H  ++K   E ++ +   L  MYAK G +D++  +F 
Sbjct: 516 EITLSSVLLACANLCSLEMGKMVHAEIVKLGIEDNIFMGTALSDMYAKSGDLDSSRRMFY 575

Query: 392 NMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSR 451
            M  ++ ++W +MV G + +G A E++ +FE+M+ +   PN  TFL IL ACSH GLV +
Sbjct: 576 QMPEKNNITWTAMVQGLAENGFAEESILLFENMIANRIAPNEHTFLAILFACSHCGLVEQ 635

Query: 452 GWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGAC 511
               F  M   + I P  +HY  M+++L RAG++ EAEE ++++P + D   W +LL AC
Sbjct: 636 AIHYFETM-QAHGIPPKDKHYTCMVDVLARAGRLPEAEELLMKVPSKLDTSSWSSLLSAC 694

Query: 512 GFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRK 569
                N EI E AAK+L EL+  N   +V+L N+YA+ G+  +  + R+ M    ++K
Sbjct: 695 NTYR-NKEIGERAAKKLHELEKDNTAGYVLLSNMYASCGKWKDAAETRILMQGPRLKK 751


>gi|357504267|ref|XP_003622422.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355497437|gb|AES78640.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 952

 Score =  293 bits (750), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 192/654 (29%), Positives = 310/654 (47%), Gaps = 86/654 (13%)

Query: 21  YSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEM------PERNVV 74
           Y+K   + EA+ +F LMP R+VV++N++ S ++  G   +   +F EM      P+   V
Sbjct: 186 YAKCLCVREAQTVFDLMPHRDVVTWNSLSSCYVNCGFPQKGLNVFREMVLDGVKPDPVTV 245

Query: 75  SWTAMICG-LAD--AGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMP 131
           S     C  L D  +G+      L   M E NV   N++V        + EA+ VF+ MP
Sbjct: 246 SCILSACSDLQDLKSGKAIHGFALKHGMVE-NVFVSNALVNLYESCLCVREAQAVFDLMP 304

Query: 132 IKNVISWNAMIAGYVECCMMGEAIVLFEEME----------------------------- 162
            +NVI+WN++ + YV C    + + +F EM                              
Sbjct: 305 HRNVITWNSLASCYVNCGFPQKGLNVFREMGLNGVKPDPMAMSSILPACSQLKDLKSGKT 364

Query: 163 ----------ERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGF 212
                       +V   T++++ Y     V E   +F  MP +NVV+W ++   +   GF
Sbjct: 365 IHGFAVKHGMVEDVFVCTALVNLYANCLCVREAQTVFDLMPHRNVVTWNSLSSCYVNCGF 424

Query: 213 HKESLLLFIEM--KGI-------------CDNGNNC-----------------NVQSCNS 240
            ++ L +F EM   G+             C +  +                  +V  CN+
Sbjct: 425 PQKGLNVFREMVLNGVKPDLVTMLSILHACSDLQDLKSGKVIHGFAVRHGMVEDVFVCNA 484

Query: 241 MINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMP----DRD 296
           +++ Y +   + EAQ +FD +P R+  SW  ++  Y +  +     Y+F  M       D
Sbjct: 485 LLSLYAKCVCVREAQVVFDLIPHREVASWNGILTAYFTNKEYEKGLYMFSQMNRDEVKAD 544

Query: 297 AVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHC 356
            + W+ +I G V+N    EA  +F +M+  G  P   T   +  A   +  + +G++IHC
Sbjct: 545 EITWSVVIGGCVKNSRIEEAMEIFRKMQTMGFKPDETTIYSILRACSLSECLRMGKEIHC 604

Query: 357 VLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANE 416
            + +   + DL   N L+ MYAKCG +  + N+F  M  +D+ SWN+M+     HG   E
Sbjct: 605 YVFRHWKDWDLARTNALVDMYAKCGGLSLSRNVFDMMPIKDVFSWNTMIFANGMHGNGKE 664

Query: 417 TLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMI 476
            L +FE ML S   P+S TF  +LSACSH+ LV  G ++FN+M   + ++P  EHY  ++
Sbjct: 665 ALSLFEKMLLSMVKPDSATFTCVLSACSHSMLVEEGVQIFNSMSRDHLVEPEAEHYTCVV 724

Query: 477 NLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNA 536
           ++  RAG ++EA  F+ R+P EP    W A L  C   + N E+A+ +AK+L E+DP  +
Sbjct: 725 DIYSRAGCLEEAYGFIQRMPMEPTAIAWKAFLAGCRVYK-NVELAKISAKKLFEIDPNGS 783

Query: 537 PAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDK 590
             +V L NI   +    E  K+R  M  +G+ K PGCSW      +  F++GDK
Sbjct: 784 ANYVTLFNILVTAKLWSEASKIRKLMKERGITKTPGCSWFHVGNRVHTFVAGDK 837



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 120/484 (24%), Positives = 211/484 (43%), Gaps = 62/484 (12%)

Query: 46  NAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVV 105
           NA +  + +   +  ARR+F+++  R+VV+W ++     + G   +   +F +M   N V
Sbjct: 79  NAFIHAYGKCKCVEGARRVFDDLVARDVVTWNSLSACYVNCGFPQQGLNVFRKMG-LNKV 137

Query: 106 SWNSMVVGLIRNG-----ELNEARKVFNSMP----IKNVISWNAMIAGYVECCMMGEAIV 156
             N + V  I  G     +L   +++   +     +++V   +A +  Y +C  + EA  
Sbjct: 138 KANPLTVSSILPGCSDLQDLKSGKEIHGFVVRHGMVEDVFVSSAFVNFYAKCLCVREAQT 197

Query: 157 LFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKES 216
           +F+ M  R+VVTW S+ S Y   G  ++G  +FR M    V      +          + 
Sbjct: 198 VFDLMPHRDVVTWNSLSSCYVNCGFPQKGLNVFREMVLDGVKPDPVTVSCILSACSDLQD 257

Query: 217 LLLFIEMKGIC-DNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDG 275
           L     + G    +G   NV   N+++N Y     + EAQ +FD +P R+ I+W S+   
Sbjct: 258 LKSGKAIHGFALKHGMVENVFVSNALVNLYESCLCVREAQAVFDLMPHRNVITWNSLASC 317

Query: 276 YLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATF 335
           Y++ G            P +          GL           +F EM  +GV P     
Sbjct: 318 YVNCG-----------FPQK----------GL----------NVFREMGLNGVKPDPMAM 346

Query: 336 SVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVS 395
           S +  A     ++  G+ IH   +K     D+ +   L+++YA C  +  A  +F  M  
Sbjct: 347 SSILPACSQLKDLKSGKTIHGFAVKHGMVEDVFVCTALVNLYANCLCVREAQTVFDLMPH 406

Query: 396 RDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACS-----HAGLVS 450
           R++V+WNS+   + + G   + L VF  M+ +G  P+ VT L IL ACS      +G V 
Sbjct: 407 RNVVTWNSLSSCYVNCGFPQKGLNVFREMVLNGVKPDLVTMLSILHACSDLQDLKSGKVI 466

Query: 451 RGWELFNAMF-DVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHR---IWGA 506
            G+ + + M  DV+          ++++L  +   ++EA+     +P    HR    W  
Sbjct: 467 HGFAVRHGMVEDVFVCN-------ALLSLYAKCVCVREAQVVFDLIP----HREVASWNG 515

Query: 507 LLGA 510
           +L A
Sbjct: 516 ILTA 519



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 101/444 (22%), Positives = 202/444 (45%), Gaps = 50/444 (11%)

Query: 15  TSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEM----PE 70
           T+ +  Y+    + EA+ +F LMP RNVV++N++ S ++  G   +   +F EM     +
Sbjct: 382 TALVNLYANCLCVREAQTVFDLMPHRNVVTWNSLSSCYVNCGFPQKGLNVFREMVLNGVK 441

Query: 71  RNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSM 130
            ++V+  +++   +D           +++    V+   ++  G++ +             
Sbjct: 442 PDLVTMLSILHACSD----------LQDLKSGKVIHGFAVRHGMVED------------- 478

Query: 131 PIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFR 190
               V   NA+++ Y +C  + EA V+F+ +  R V +W  +++ Y    E E+G  +F 
Sbjct: 479 ----VFVCNALLSLYAKCVCVREAQVVFDLIPHREVASWNGILTAYFTNKEYEKGLYMFS 534

Query: 191 RMPRKNV----VSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQS----CNSMI 242
           +M R  V    ++W+ +IGG   N   +E++ +F +M+ +    +   + S    C+  +
Sbjct: 535 QMNRDEVKADEITWSVVIGGCVKNSRIEEAMEIFRKMQTMGFKPDETTIYSILRACS--L 592

Query: 243 NGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTA 302
           +  +R G+ E    +F      D     +++D Y   G +S +  +F  MP +D  +W  
Sbjct: 593 SECLRMGK-EIHCYVFRHWKDWDLARTNALVDMYAKCGGLSLSRNVFDMMPIKDVFSWNT 651

Query: 303 MISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTE 362
           MI     +    EA  LF +M    V P +ATF+ +  A   +  ++ G QI   + +  
Sbjct: 652 MIFANGMHGNGKEALSLFEKMLLSMVKPDSATFTCVLSACSHSMLVEEGVQIFNSMSRDH 711

Query: 363 -SESDLILENCLISMYAKCGVIDNAYNIFSNM-VSRDLVSWNSMVMG---FSHHGLAN-E 416
             E +     C++ +Y++ G ++ AY     M +    ++W + + G   + +  LA   
Sbjct: 712 LVEPEAEHYTCVVDIYSRAGCLEEAYGFIQRMPMEPTAIAWKAFLAGCRVYKNVELAKIS 771

Query: 417 TLKVFESMLESGTHPNSVTFLGIL 440
             K+FE  ++     N VT   IL
Sbjct: 772 AKKLFE--IDPNGSANYVTLFNIL 793



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 65/275 (23%), Positives = 117/275 (42%), Gaps = 21/275 (7%)

Query: 271 SMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPP 330
           + I  Y     V  A  +F ++  RD V W ++ +  V      +   +F +M  + V  
Sbjct: 80  AFIHAYGKCKCVEGARRVFDDLVARDVVTWNSLSACYVNCGFPQQGLNVFRKMGLNKVKA 139

Query: 331 LNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIF 390
              T S +        ++  G++IH  +++     D+ + +  ++ YAKC  +  A  +F
Sbjct: 140 NPLTVSSILPGCSDLQDLKSGKEIHGFVVRHGMVEDVFVSSAFVNFYAKCLCVREAQTVF 199

Query: 391 SNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACS-----H 445
             M  RD+V+WNS+   + + G   + L VF  M+  G  P+ VT   ILSACS      
Sbjct: 200 DLMPHRDVVTWNSLSSCYVNCGFPQKGLNVFREMVLDGVKPDPVTVSCILSACSDLQDLK 259

Query: 446 AGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHR--- 502
           +G    G+ L + M +   +        +++NL      ++EA+     +P    HR   
Sbjct: 260 SGKAIHGFALKHGMVENVFVSN------ALVNLYESCLCVREAQAVFDLMP----HRNVI 309

Query: 503 IWGALLGA---CGFCEGNAEIAEHAAKRLLELDPL 534
            W +L      CGF +    +        ++ DP+
Sbjct: 310 TWNSLASCYVNCGFPQKGLNVFREMGLNGVKPDPM 344



 Score = 75.1 bits (183), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 56/237 (23%), Positives = 101/237 (42%), Gaps = 13/237 (5%)

Query: 315 EATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLI 374
           EA  ++   RA G+ P    F  +  A  A+ +    +Q H    +    SD+ + N  I
Sbjct: 23  EAIKIYTSSRARGIKPDKPVFMAVAKACAASRDALKVKQFHDDATRCGVMSDVSIGNAFI 82

Query: 375 SMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSV 434
             Y KC  ++ A  +F ++V+RD+V+WNS+   + + G   + L VF  M  +    N +
Sbjct: 83  HAYGKCKCVEGARRVFDDLVARDVVTWNSLSACYVNCGFPQQGLNVFRKMGLNKVKANPL 142

Query: 435 TFLGILSACSHAGLVSRGWELFNAMFDVYKIQPG--PEHYVS--MINLLGRAGKIKEAEE 490
           T   IL  CS    +  G E+       + ++ G   + +VS   +N   +   ++EA+ 
Sbjct: 143 TVSSILPGCSDLQDLKSGKEIHG-----FVVRHGMVEDVFVSSAFVNFYAKCLCVREAQT 197

Query: 491 FVLRLPFEPDHRIWGALLGA---CGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCN 544
               +P   D   W +L      CGF +    +        ++ DP+     +  C+
Sbjct: 198 VFDLMPHR-DVVTWNSLSSCYVNCGFPQKGLNVFREMVLDGVKPDPVTVSCILSACS 253


>gi|449458231|ref|XP_004146851.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g17630-like [Cucumis sativus]
 gi|449522932|ref|XP_004168479.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g17630-like [Cucumis sativus]
          Length = 705

 Score =  293 bits (750), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 186/609 (30%), Positives = 324/609 (53%), Gaps = 28/609 (4%)

Query: 18  ITKYSKRGFIDEAKALFQLMP---QRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVV 74
           ++ YS+ G + +A+ +F   P     N + +N+++   + +G   EA +L+ +M    V+
Sbjct: 77  VSIYSRYGLVSDARKVFGSAPFECYSNFLLWNSIIRANVYHGYCIEALQLYGKMRNYGVL 136

Query: 75  ----SWTAMICGLADAGRVCEARKLFEEMPE---RNVVSWNSMVVGLIRNGE-LNEARKV 126
               ++  ++   ++ G     + L   + +   +N +   + ++G+    E +++ARKV
Sbjct: 137 GDGFTFPLLLRASSNLGAFNMCKNLHCHVVQFGFQNHLHVGNELIGMYAKLERMDDARKV 196

Query: 127 FNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEME----ERNVVTWTSMISGYCRAGEV 182
           F+ M IK+V+SWN M++GY     +  A  +F +ME    E N VTWTS++S + R G +
Sbjct: 197 FDKMRIKSVVSWNTMVSGYAYNYDVNGASRMFHQMELEGVEPNPVTWTSLLSSHARCGHL 256

Query: 183 EEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKG-ICDNGNNCNVQSCNSM 241
           EE   LF +M  K V     M+           +L     + G +   G N  + + N++
Sbjct: 257 EETMVLFCKMRMKGVGPTAEMLAVVLSVCADLATLNSGQMIHGYMVKGGFNDYLFAKNAL 316

Query: 242 INGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDA---- 297
           I  Y + G + +A+ LF  + V++ +SW ++I  +   G    A  L   +   +A    
Sbjct: 317 ITLYGKGGGVGDAEKLFHEMKVKNLVSWNALISSFAESGVYDKALELLSQLEKMEAYPEM 376

Query: 298 ----VAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQ 353
               + W+A+I G     L  E+  +F +M+   V   + T + +       A ++LGR+
Sbjct: 377 KPNVITWSAIICGFASKGLGEESLEVFRKMQLANVKANSVTIASVLSICAMLAALNLGRE 436

Query: 354 IHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGL 413
           +H  +++   + ++++ N LI+MY KCG     + +F  + +RD +SWNSM+ G+  HGL
Sbjct: 437 MHGHVIRARMDDNVLVGNGLINMYTKCGSFKPGFMVFEKLENRDSISWNSMIAGYGTHGL 496

Query: 414 ANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYV 473
             + L  F  M++SG  P+ VTF+  LSACSHAGLV+ G  LF+ M   +KI+P  EHY 
Sbjct: 497 GKDALATFNHMIKSGYRPDGVTFIAALSACSHAGLVAEGHWLFSQMRQNFKIEPEIEHYA 556

Query: 474 SMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDP 533
            M++LLGRAG ++EA   +  +P EP+  IW +LL +C     + ++AE AA ++  L+ 
Sbjct: 557 CMVDLLGRAGLVEEASNIIKGMPMEPNAYIWSSLLNSCRM-HKDTDLAEEAAAKISNLNS 615

Query: 534 LNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIP- 592
               +H++L NI+AAS R  +  ++R+    KG++KVPG SW+     + MF +G  I  
Sbjct: 616 KITGSHMLLSNIFAASCRWEDSARVRISARAKGLKKVPGWSWIEVKKKVYMFKAGYTISE 675

Query: 593 --AQVAEIL 599
              +V EIL
Sbjct: 676 GLEKVDEIL 684



 Score = 42.7 bits (99), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 25/103 (24%), Positives = 50/103 (48%), Gaps = 3/103 (2%)

Query: 348 IDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNM---VSRDLVSWNSM 404
           I   +Q+H   + T +     +   L+S+Y++ G++ +A  +F +       + + WNS+
Sbjct: 51  IQHSKQVHSATVVTGAYCSAFVSARLVSIYSRYGLVSDARKVFGSAPFECYSNFLLWNSI 110

Query: 405 VMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAG 447
           +    +HG   E L+++  M   G   +  TF  +L A S+ G
Sbjct: 111 IRANVYHGYCIEALQLYGKMRNYGVLGDGFTFPLLLRASSNLG 153


>gi|328774763|gb|AEB39781.1| pentatricopeptide repeat protein 79 [Funaria hygrometrica]
          Length = 820

 Score =  293 bits (750), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 195/639 (30%), Positives = 315/639 (49%), Gaps = 56/639 (8%)

Query: 12  VHLTSSITK-YSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEM-- 68
           V++ +++ K Y   G ++EA+ LF     ++VVS+N M+SG+   G   EA  LF  M  
Sbjct: 79  VYIINTLLKLYVHCGSVNEARRLFDKFSNKSVVSWNVMISGYAHRGLGQEAFNLFTLMQQ 138

Query: 69  ----PER---------------------------------NVVSWTAMICGLADAGRVCE 91
               P++                                 N     A+I   A  G V +
Sbjct: 139 EGLEPDKFTFVSILSACSSPAALNWGREVHVRVMEAGLANNATVGNALISMYAKCGSVRD 198

Query: 92  ARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSM------PIK----NVISWNAM 141
           AR++F+ M  R+ VSW ++      +G   E+ K +++M      P +    NV+S    
Sbjct: 199 ARRVFDAMASRDEVSWTTLTGAYAESGYAQESLKTYHAMLQEGVRPSRITYMNVLSACGS 258

Query: 142 IAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWT 201
           +A   +   +   IV  E     +V   T++   Y + G V++   +F  +P ++V++W 
Sbjct: 259 LAALEKGKQIHAQIV--ESEHHSDVRVSTALTKMYIKCGAVKDAREVFECLPNRDVIAWN 316

Query: 202 AMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMIN--GYIRFGRLEEAQNLFD 259
            MIGG   +G  +E+  +F  M   C   +     +  S     G +  G+   A+ + D
Sbjct: 317 TMIGGLVDSGQLEEAHGMFHRMLKECVAPDRVTYLAILSACARPGGLACGKEIHARAVKD 376

Query: 260 TVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYL 319
            + V D     ++I+ Y   G + +A  +F  MP RD V+WTA++ G       VE+   
Sbjct: 377 GL-VSDVRFGNALINMYSKAGSMKDARQVFDRMPKRDVVSWTALVGGYADCGQVVESFST 435

Query: 320 FMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAK 379
           F +M   GV     T+  +  A      +  G++IH  ++K    +DL + N L+SMY K
Sbjct: 436 FKKMLQQGVEANKITYMCVLKACSNPVALKWGKEIHAEVVKAGIFADLAVANALMSMYFK 495

Query: 380 CGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGI 439
           CG +++A  +   M +RD+V+WN+++ G + +G   E L+ FE M      PN+ TF+ +
Sbjct: 496 CGSVEDAIRVSEGMSTRDVVTWNTLIGGLAQNGRGLEALQKFEVMKSEEMRPNATTFVNV 555

Query: 440 LSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEP 499
           +SAC    LV  G   F +M   Y I P  +HY  M+++L RAG + EAE+ +L +PF+P
Sbjct: 556 MSACRVRNLVEEGRRQFASMRKDYGIVPTEKHYACMVDILARAGHLGEAEDVILTMPFKP 615

Query: 500 DHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLR 559
              +WGALL AC    GN EI E AA++ L+L+P NA  +V L  IYAA+G   +  KLR
Sbjct: 616 SAAMWGALLAAC-RAHGNVEIGEQAAEQCLKLEPQNAGTYVSLSFIYAAAGMWRDVAKLR 674

Query: 560 MDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
             M  +GV+K PG SW+   G +  F++GD+   +  EI
Sbjct: 675 KLMKERGVKKEPGRSWIEVAGEVHSFVAGDQSHPRTEEI 713



 Score =  129 bits (323), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 91/329 (27%), Positives = 147/329 (44%), Gaps = 50/329 (15%)

Query: 230 GNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLF 289
           G   NV   N+++  Y+  G + EA+ LFD    +  +SW  MI GY   G         
Sbjct: 74  GMKPNVYIINTLLKLYVHCGSVNEARRLFDKFSNKSVVSWNVMISGYAHRG--------- 124

Query: 290 HNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANID 349
                                 L  EA  LF  M+  G+ P   TF  +  A  + A ++
Sbjct: 125 ----------------------LGQEAFNLFTLMQQEGLEPDKFTFVSILSACSSPAALN 162

Query: 350 LGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFS 409
            GR++H  +M+    ++  + N LISMYAKCG + +A  +F  M SRD VSW ++   ++
Sbjct: 163 WGREVHVRVMEAGLANNATVGNALISMYAKCGSVRDARRVFDAMASRDEVSWTTLTGAYA 222

Query: 410 HHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGP 469
             G A E+LK + +ML+ G  P+ +T++ +LSAC     + +G ++   + +        
Sbjct: 223 ESGYAQESLKTYHAMLQEGVRPSRITYMNVLSACGSLAALEKGKQIHAQIVE-------S 275

Query: 470 EHY------VSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCE-GNAEIAE 522
           EH+       ++  +  + G +K+A E    LP   D   W  ++G  G  + G  E A 
Sbjct: 276 EHHSDVRVSTALTKMYIKCGAVKDAREVFECLP-NRDVIAWNTMIG--GLVDSGQLEEAH 332

Query: 523 HAAKRLLELDPLNAPAHVVLCNIYAASGR 551
               R+L+     AP  V    I +A  R
Sbjct: 333 GMFHRMLK--ECVAPDRVTYLAILSACAR 359



 Score = 82.4 bits (202), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 45/168 (26%), Positives = 86/168 (51%), Gaps = 10/168 (5%)

Query: 347 NIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVM 406
           ++ +G+Q+H  +++   + ++ + N L+ +Y  CG ++ A  +F    ++ +VSWN M+ 
Sbjct: 59  DLAVGKQVHEHILRFGMKPNVYIINTLLKLYVHCGSVNEARRLFDKFSNKSVVSWNVMIS 118

Query: 407 GFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQ 466
           G++H GL  E   +F  M + G  P+  TF+ ILSACS    ++ G E+      V  ++
Sbjct: 119 GYAHRGLGQEAFNLFTLMQQEGLEPDKFTFVSILSACSSPAALNWGREVH-----VRVME 173

Query: 467 PGPEHYVS----MINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGA 510
            G  +  +    +I++  + G +++A   V       D   W  L GA
Sbjct: 174 AGLANNATVGNALISMYAKCGSVRDARR-VFDAMASRDEVSWTTLTGA 220


>gi|297805814|ref|XP_002870791.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297316627|gb|EFH47050.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 674

 Score =  293 bits (750), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 200/621 (32%), Positives = 313/621 (50%), Gaps = 64/621 (10%)

Query: 13  HLTSSIT-KYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEM--- 68
           H+ S+++  Y+  G I  A+ LF  MPQ +++SYN ++  ++++G   +A  +F  M   
Sbjct: 50  HILSTLSVTYALCGHIAYARKLFDEMPQSSLLSYNIVIRMYVRDGLYHDAINVFIRMVSE 109

Query: 69  -----PE-------------------------RNVVSW--------TAMICGLADAGRVC 90
                P+                         R + SW         A++    + GRV 
Sbjct: 110 GIKCVPDGYTYPFVAKAAGELKSISLGLVIHGRILRSWFGMDKYVQNALLAMYMNFGRVE 169

Query: 91  EARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECC- 149
            AR +F+ M  R+V+SWN+M+ G  RNG +N+A  +F+ M  + V   +A I   +  C 
Sbjct: 170 MARNVFDVMKNRDVISWNTMISGYYRNGYMNDALMMFDWMVNEGVDPDHATIVSMLPVCG 229

Query: 150 -----MMGEAIVLFEEMEER---NVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWT 201
                 MG  +    E E+R    +    ++++ Y + G ++E   +F RM R++V++WT
Sbjct: 230 HLKGLEMGRNVHKLVE-EKRLGDKIEVKNALVNMYLKCGRMDEARFVFGRMERRDVITWT 288

Query: 202 AMIGGFAWNGFHKESLLL--FIEMKGICDNGNNCN--VQSCNSMINGYIRFGRLEEAQNL 257
            MI G+  +G  + +L L   ++ +G+  N       V +C   +   +  G+      +
Sbjct: 289 CMINGYIEDGDVENALELCRLMQFEGVRPNAVTIASLVSACGDALK--LNDGKCLHGWAI 346

Query: 258 FDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEAT 317
              V   D I  TS+I  Y     +   + +F          W+A+I+G VQNEL  +A 
Sbjct: 347 RQKV-CSDIIIETSLISMYAKCKHIDLCFRVFSGASRNHTGPWSAIIAGCVQNELVRDAL 405

Query: 318 YLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMY 377
            LF  MR   V P  AT + L  A    A++     IHC L KT   S L     L+ +Y
Sbjct: 406 DLFKRMRREDVEPNIATLNSLLPAYATLADLRQTMNIHCYLTKTGFMSSLDAATGLVHVY 465

Query: 378 AKCGVIDNAYNIFSNMV----SRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNS 433
           +KCG +++A+ IF+ +     S+D+V W +++ G+  HG  +  L+VF  M+ SG  PN 
Sbjct: 466 SKCGTLESAHKIFNGIQEKHKSKDVVLWGALISGYGMHGDGHNALQVFMEMVRSGVTPNE 525

Query: 434 VTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVL 493
           +TF   L+ACSH+GLV  G  LF+ M + YK      HY  +++LLGRAG++ EA   + 
Sbjct: 526 ITFTSALNACSHSGLVEEGLTLFSFMLEHYKTLARSNHYTCIVDLLGRAGRLDEAYNLIT 585

Query: 494 RLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHV 553
            +PFEP   IWGALL AC   E N ++ E AA +L EL+P N   +V+L NIYAA GR  
Sbjct: 586 TIPFEPTSTIWGALLAACVTHE-NVQLGEMAANKLFELEPENTGNYVLLANIYAALGRWK 644

Query: 554 EEHKLRMDMGLKGVRKVPGCS 574
           +  K+R  M   G+RK PG S
Sbjct: 645 DMEKVRNMMENVGLRKKPGHS 665



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 114/453 (25%), Positives = 199/453 (43%), Gaps = 88/453 (19%)

Query: 41  NVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVS---WTAMICGLADAGRVCEARKLFE 97
           +V  Y ++L+ +     +S+ + L   +     VS    + +    A  G +  ARKLF+
Sbjct: 14  SVKQYQSLLNHYAATQSISKTKALHCHVITGGRVSGHILSTLSVTYALCGHIAYARKLFD 73

Query: 98  EMPERNVVSWNSMVVGLIRNGELNEARKVFNSM--------PIKNVISWNAMIAGYVECC 149
           EMP+ +++S+N ++   +R+G  ++A  VF  M        P      + A  AG ++  
Sbjct: 74  EMPQSSLLSYNIVIRMYVRDGLYHDAINVFIRMVSEGIKCVPDGYTYPFVAKAAGELKSI 133

Query: 150 MMGEAIVLFEEMEERNVVTW--------TSMISGYCRAGEVEEGYCLFRRMPRKNVVSWT 201
            +G  I        R + +W         ++++ Y   G VE    +F  M  ++V+SW 
Sbjct: 134 SLGLVI------HGRILRSWFGMDKYVQNALLAMYMNFGRVEMARNVFDVMKNRDVISWN 187

Query: 202 AMIGGFAWNGFHKESLLLF---------------IEMKGICDN------GNNCN------ 234
            MI G+  NG+  ++L++F               + M  +C +      G N +      
Sbjct: 188 TMISGYYRNGYMNDALMMFDWMVNEGVDPDHATIVSMLPVCGHLKGLEMGRNVHKLVEEK 247

Query: 235 -----VQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLF 289
                ++  N+++N Y++ GR++EA+ +F  +  RD I+WT MI+GY+  G V NA  L 
Sbjct: 248 RLGDKIEVKNALVNMYLKCGRMDEARFVFGRMERRDVITWTCMINGYIEDGDVENALELC 307

Query: 290 HNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANID 349
                            L+Q E               GV P   T + L  A G    ++
Sbjct: 308 R----------------LMQFE---------------GVRPNAVTIASLVSACGDALKLN 336

Query: 350 LGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFS 409
            G+ +H   ++ +  SD+I+E  LISMYAKC  ID  + +FS         W++++ G  
Sbjct: 337 DGKCLHGWAIRQKVCSDIIIETSLISMYAKCKHIDLCFRVFSGASRNHTGPWSAIIAGCV 396

Query: 410 HHGLANETLKVFESMLESGTHPNSVTFLGILSA 442
            + L  + L +F+ M      PN  T   +L A
Sbjct: 397 QNELVRDALDLFKRMRREDVEPNIATLNSLLPA 429


>gi|345505212|gb|AEN99830.1| chlororespiratory reduction 4, partial [Brassica oleracea]
          Length = 590

 Score =  293 bits (750), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 168/482 (34%), Positives = 257/482 (53%), Gaps = 46/482 (9%)

Query: 111 VVGL-IRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEM--EERNVV 167
           ++GL I+ G L  AR+VF+ MP ++ +S+N+MI GYV+C ++  A  LF+ M  E+RN++
Sbjct: 147 LIGLYIKCGFLGFARQVFDRMPERDSVSYNSMIDGYVKCGLVESAGELFDLMPREKRNLI 206

Query: 168 TWTSMISGYC-RAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGI 226
           TW SMI GY  RA  V+    LF  MP K+++SW                          
Sbjct: 207 TWNSMIGGYAQRADGVDVAEKLFDEMPEKDLISW-------------------------- 240

Query: 227 CDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAY 286
                       NSMI GY++ GR+E+A+ LF+ +P RD ++W  MIDGY  +G V  A 
Sbjct: 241 ------------NSMIGGYVKHGRIEDAKGLFNVMPRRDVVTWAIMIDGYGKLGLVHVAK 288

Query: 287 YLFHNMPDRDAVAWTAMISGLVQNELFVEATYLF--MEMRAHGVPPLNATFSVLFGAAGA 344
            LF  MP RD VA+ +M+SG VQN   +EA  +F  ME  +H + P   +  ++  A   
Sbjct: 289 TLFDQMPHRDVVAYNSMMSGYVQNRYHMEALEVFNHMEKESH-LTPDETSLVIVLSAIAQ 347

Query: 345 TANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSM 404
              +     +H  +++ +      L   LI MY+KCG I +A  +F  + S+ +  WN+M
Sbjct: 348 LGRLSKAIDMHLYIVEKQFPLSGKLGVALIDMYSKCGSIQHAMRVFEGIESKSIDHWNAM 407

Query: 405 VMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYK 464
           + G + HGL      +   +      P+ +TF+G+L+ACSH+GLV  G   F  M   +K
Sbjct: 408 IGGLAVHGLGESAFDMLFQIERRSIKPDHITFVGVLNACSHSGLVKEGLLCFELMRRKHK 467

Query: 465 IQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHA 524
           I+P  +HY  M+++L R+G IK A   +  +P EP+  IW   L AC       E  E  
Sbjct: 468 IEPRLQHYGCMVDILARSGSIKLARNLIEGMPIEPNDVIWRTFLTACSH-HKEFETGELV 526

Query: 525 AKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQM 584
           AK L+     N  ++V+L N+YA++G   +  ++R  M  K + K+PGCSW+  +G +  
Sbjct: 527 AKHLILXGGYNPSSYVLLSNMYASNGMWKDVRRVRTMMKEKNIEKIPGCSWIELDGRVHE 586

Query: 585 FL 586
           FL
Sbjct: 587 FL 588



 Score =  182 bits (462), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 127/446 (28%), Positives = 228/446 (51%), Gaps = 22/446 (4%)

Query: 14  LTSSITKYSKRGFIDEAKALFQLMPQRNVVS----YNAMLSGFLQNGRLSEARRLFEEMP 69
           L+ ++   S+ GF+ E   +   + +    S     N ++  +++ G L  AR++F+ MP
Sbjct: 109 LSLALKACSRLGFVKEGTQVHGFLIKTGTWSDLFLQNCLIGLYIKCGFLGFARQVFDRMP 168

Query: 70  ERNVVSWTAMICGLADAGRVCEARKLFEEMP--ERNVVSWNSMVVGLIRNGE-LNEARKV 126
           ER+ VS+ +MI G    G V  A +LF+ MP  +RN+++WNSM+ G  +  + ++ A K+
Sbjct: 169 ERDSVSYNSMIDGYVKCGLVESAGELFDLMPREKRNLITWNSMIGGYAQRADGVDVAEKL 228

Query: 127 FNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGY 186
           F+ MP K++ISWN+MI GYV+   + +A  LF  M  R+VVTW  MI GY + G V    
Sbjct: 229 FDEMPEKDLISWNSMIGGYVKHGRIEDAKGLFNVMPRRDVVTWAIMIDGYGKLGLVHVAK 288

Query: 187 CLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYI 246
            LF +MP ++VV++ +M+ G+  N +H E+L +F  M+   ++    +  S   +++   
Sbjct: 289 TLFDQMPHRDVVAYNSMMSGYVQNRYHMEALEVFNHMEK--ESHLTPDETSLVIVLSAIA 346

Query: 247 RFGRLEEAQNLF-----DTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWT 301
           + GRL +A ++         P+  ++   ++ID Y   G + +A  +F  +  +    W 
Sbjct: 347 QLGRLSKAIDMHLYIVEKQFPLSGKLG-VALIDMYSKCGSIQHAMRVFEGIESKSIDHWN 405

Query: 302 AMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCV-LMK 360
           AMI GL  + L   A  +  ++    + P + TF  +  A   +  +  G  + C  LM+
Sbjct: 406 AMIGGLAVHGLGESAFDMLFQIERRSIKPDHITFVGVLNACSHSGLVKEG--LLCFELMR 463

Query: 361 TESESDLILEN--CLISMYAKCGVIDNAYNIFSNM-VSRDLVSWNSMVMGFSHHG-LANE 416
            + + +  L++  C++ + A+ G I  A N+   M +  + V W + +   SHH      
Sbjct: 464 RKHKIEPRLQHYGCMVDILARSGSIKLARNLIEGMPIEPNDVIWRTFLTACSHHKEFETG 523

Query: 417 TLKVFESMLESGTHPNSVTFLGILSA 442
            L     +L  G +P+S   L  + A
Sbjct: 524 ELVAKHLILXGGYNPSSYVLLSNMYA 549



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 43/129 (33%), Positives = 62/129 (48%)

Query: 296 DAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIH 355
           D   W  +I          +A +L   M    VP    + S+   A      +  G Q+H
Sbjct: 70  DPFLWNVVIKSHSHGVDPRKALFLLCLMLESSVPVDKFSLSLALKACSRLGFVKEGTQVH 129

Query: 356 CVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLAN 415
             L+KT + SDL L+NCLI +Y KCG +  A  +F  M  RD VS+NSM+ G+   GL  
Sbjct: 130 GFLIKTGTWSDLFLQNCLIGLYIKCGFLGFARQVFDRMPERDSVSYNSMIDGYVKCGLVE 189

Query: 416 ETLKVFESM 424
              ++F+ M
Sbjct: 190 SAGELFDLM 198


>gi|357475445|ref|XP_003608008.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355509063|gb|AES90205.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1183

 Score =  293 bits (749), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 184/606 (30%), Positives = 312/606 (51%), Gaps = 35/606 (5%)

Query: 18   ITKYSKRGFIDEAKALFQLMPQRNVV----SYNAMLSGFLQNGRLSEARRLFEEMPERNV 73
            +++Y+K G   E+ +LF+ M +  VV    ++  +L  F   G++ E +R+   + +   
Sbjct: 442  MSEYAKIGNFRESVSLFKKMQKLGVVGNCYTFTCVLKCFAALGKVKECKRVHGYVLKLGF 501

Query: 74   VSWTAMICGLADA----GRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNS 129
             S TA++  L  A    G V  A  LF+E+ E +VVSWNSM+ G + NG      ++F  
Sbjct: 502  GSNTAVVNSLIAAYFKFGGVESAHNLFDELSEPDVVSWNSMINGCVVNGFSGNGLEIFIQ 561

Query: 130  MPIKNV-ISWNAMIAGYVECC-----MMGEAIVLF--EEMEERNVVTWTSMISGYCRAGE 181
            M I  V +    +++  V         +G A+  F  +      VV   +++  Y + G 
Sbjct: 562  MLILGVEVDLTTLVSVLVAWANIGNLSLGRALHGFGVKACFSEEVVFSNTLLDMYSKCGN 621

Query: 182  VEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSM 241
            +     +F +M    +VSWT+ I  +   G + +++ LF EM+     G   ++ +  S+
Sbjct: 622  LNGATEVFVKMGDTTIVSWTSTIAAYVREGLYSDAIGLFDEMQS---KGVRPDIYTVTSI 678

Query: 242  INGYIRFGRLEEAQNLFDTV---------PVRDEISWTSMIDGYLSVGQVSNAYYLFHNM 292
            ++       L++ +++   V         PV +     ++I+ Y   G V  A  +F  +
Sbjct: 679  VHACACSSSLDKGRDVHSYVIKNGMGSNLPVTN-----ALINMYAKCGSVEEARLVFSKI 733

Query: 293  PDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGR 352
            P +D V+W  MI G  QN L  EA  LF++M+     P + T + +  A    A +D GR
Sbjct: 734  PVKDIVSWNTMIGGYSQNSLPNEALELFLDMQKQ-FKPDDITMACVLPACAGLAALDKGR 792

Query: 353  QIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHG 412
            +IH  +++    SDL +   L+ MYAKCG++  A  +F  +  +DL+SW  M+ G+  HG
Sbjct: 793  EIHGHILRRGYFSDLHVACALVDMYAKCGLLVLAQLLFDMIPKKDLISWTVMIAGYGMHG 852

Query: 413  LANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHY 472
              NE +  F  M  +G  P+  +F  IL+ACSH+GL++ GW+ FN+M +   ++P  EHY
Sbjct: 853  FGNEAISTFNEMRIAGIEPDESSFSVILNACSHSGLLNEGWKFFNSMRNECGVEPKLEHY 912

Query: 473  VSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELD 532
              +++LL R G + +A +F+  +P +PD  IWG LL  C     + ++AE  A+ + EL+
Sbjct: 913  ACVVDLLARMGNLSKAYKFIESMPIKPDTTIWGVLLSGCRI-HHDVKLAEKVAEHIFELE 971

Query: 533  PLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIP 592
            P N   +VVL N+YA + +  E  KLR  M  +G ++ PGCSW+   G   +F++G+   
Sbjct: 972  PDNTRYYVVLANVYAEAEKWEEVKKLRKRMQKRGFKQNPGCSWIEVGGKFNIFVAGNSKH 1031

Query: 593  AQVAEI 598
             Q   I
Sbjct: 1032 PQAKRI 1037



 Score =  165 bits (417), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 126/479 (26%), Positives = 229/479 (47%), Gaps = 35/479 (7%)

Query: 85  DAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMP----IKNVISWNA 140
           + G + + RK+F+++    V  WN ++    + G   E+  +F  M     + N  ++  
Sbjct: 416 NCGDLVQGRKIFDKIMNDKVFLWNLLMSEYAKIGNFRESVSLFKKMQKLGVVGNCYTFTC 475

Query: 141 MIA-----GYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRK 195
           ++      G V+ C      VL       N     S+I+ Y + G VE  + LF  +   
Sbjct: 476 VLKCFAALGKVKECKRVHGYVLKLGFGS-NTAVVNSLIAAYFKFGGVESAHNLFDELSEP 534

Query: 196 NVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQ 255
           +VVSW +MI G   NGF    L +FI+M  +   G   ++ +  S++  +   G L   +
Sbjct: 535 DVVSWNSMINGCVVNGFSGNGLEIFIQMLIL---GVEVDLTTLVSVLVAWANIGNLSLGR 591

Query: 256 NLFD---TVPVRDEISWT-SMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNE 311
            L          +E+ ++ +++D Y   G ++ A  +F  M D   V+WT+ I+  V+  
Sbjct: 592 ALHGFGVKACFSEEVVFSNTLLDMYSKCGNLNGATEVFVKMGDTTIVSWTSTIAAYVREG 651

Query: 312 LFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILEN 371
           L+ +A  LF EM++ GV P   T + +  A   ++++D GR +H  ++K    S+L + N
Sbjct: 652 LYSDAIGLFDEMQSKGVRPDIYTVTSIVHACACSSSLDKGRDVHSYVIKNGMGSNLPVTN 711

Query: 372 CLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHP 431
            LI+MYAKCG ++ A  +FS +  +D+VSWN+M+ G+S + L NE L++F  M +    P
Sbjct: 712 ALINMYAKCGSVEEARLVFSKIPVKDIVSWNTMIGGYSQNSLPNEALELFLDM-QKQFKP 770

Query: 432 NSVTFLGILSACSHAGLVSRGWE-----LFNAMFDVYKIQPGPEHYVSMINLLGRAGKIK 486
           + +T   +L AC+    + +G E     L    F    +        +++++  + G + 
Sbjct: 771 DDITMACVLPACAGLAALDKGREIHGHILRRGYFSDLHVA------CALVDMYAKCGLLV 824

Query: 487 EAEEFVLRLPFEPDHRIWGALL---GACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVL 542
            A+     +P + D   W  ++   G  GF  GN  I+     R+  ++P  +   V+L
Sbjct: 825 LAQLLFDMIP-KKDLISWTVMIAGYGMHGF--GNEAISTFNEMRIAGIEPDESSFSVIL 880



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 125/509 (24%), Positives = 212/509 (41%), Gaps = 115/509 (22%)

Query: 14  LTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEM----P 69
           + S I  Y K G ++ A  LF  + + +VVS+N+M++G + NG       +F +M     
Sbjct: 508 VNSLIAAYFKFGGVESAHNLFDELSEPDVVSWNSMINGCVVNGFSGNGLEIFIQMLILGV 567

Query: 70  ERNVVSWTAMICGLADAGRVCEARKL----FEEMPERNVVSWNSMVVGLIRNGELNEARK 125
           E ++ +  +++   A+ G +   R L     +      VV  N+++    + G LN A +
Sbjct: 568 EVDLTTLVSVLVAWANIGNLSLGRALHGFGVKACFSEEVVFSNTLLDMYSKCGNLNGATE 627

Query: 126 VFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEER----NVVTWTS---------- 171
           VF  M    ++SW + IA YV   +  +AI LF+EM+ +    ++ T TS          
Sbjct: 628 VFVKMGDTTIVSWTSTIAAYVREGLYSDAIGLFDEMQSKGVRPDIYTVTSIVHACACSSS 687

Query: 172 -------------------------MISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGG 206
                                    +I+ Y + G VEE   +F ++P K++VSW  MIGG
Sbjct: 688 LDKGRDVHSYVIKNGMGSNLPVTNALINMYAKCGSVEEARLVFSKIPVKDIVSWNTMIGG 747

Query: 207 FAWNGFHKESLLLFIEMKG-------------------------------ICDNGNNCNV 235
           ++ N    E+L LF++M+                                I   G   ++
Sbjct: 748 YSQNSLPNEALELFLDMQKQFKPDDITMACVLPACAGLAALDKGREIHGHILRRGYFSDL 807

Query: 236 QSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDR 295
               ++++ Y + G L  AQ LFD +P +D ISWT MI GY          + F N    
Sbjct: 808 HVACALVDMYAKCGLLVLAQLLFDMIPKKDLISWTVMIAGY--------GMHGFGN---- 855

Query: 296 DAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIH 355
                              EA   F EMR  G+ P  ++FSV+  A   +  ++ G +  
Sbjct: 856 -------------------EAISTFNEMRIAGIEPDESSFSVILNACSHSGLLNEGWKFF 896

Query: 356 CVLMKTESESDLILEN--CLISMYAKCGVIDNAYNIFSNM-VSRDLVSWNSMVMGFSHHG 412
              M+ E   +  LE+  C++ + A+ G +  AY    +M +  D   W  ++ G   H 
Sbjct: 897 NS-MRNECGVEPKLEHYACVVDLLARMGNLSKAYKFIESMPIKPDTTIWGVLLSGCRIHH 955

Query: 413 LANETLKVFESMLESGTHPNSVTFLGILS 441
                 KV E + E    P++  +  +L+
Sbjct: 956 DVKLAEKVAEHIFE--LEPDNTRYYVVLA 982



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 81/350 (23%), Positives = 162/350 (46%), Gaps = 59/350 (16%)

Query: 11  VVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPE 70
           VV   + +  YSK G ++ A  +F  M    +VS+ + ++ +++ G  S+A  LF+EM  
Sbjct: 606 VVFSNTLLDMYSKCGNLNGATEVFVKMGDTTIVSWTSTIAAYVREGLYSDAIGLFDEMQS 665

Query: 71  R----NVVSWTAMICGLADAGRVCEARKLFEEMPER----NVVSWNSMVVGLIRNGELNE 122
           +    ++ + T+++   A +  + + R +   + +     N+   N+++    + G + E
Sbjct: 666 KGVRPDIYTVTSIVHACACSSSLDKGRDVHSYVIKNGMGSNLPVTNALINMYAKCGSVEE 725

Query: 123 ARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEER------------------ 164
           AR VF+ +P+K+++SWN MI GY +  +  EA+ LF +M+++                  
Sbjct: 726 ARLVFSKIPVKDIVSWNTMIGGYSQNSLPNEALELFLDMQKQFKPDDITMACVLPACAGL 785

Query: 165 --------------------NVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMI 204
                               ++    +++  Y + G +     LF  +P+K+++SWT MI
Sbjct: 786 AALDKGREIHGHILRRGYFSDLHVACALVDMYAKCGLLVLAQLLFDMIPKKDLISWTVMI 845

Query: 205 GGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVR 264
            G+  +GF  E++  F EM+     G   +  S + ++N     G L E    F++  +R
Sbjct: 846 AGYGMHGFGNEAISTFNEMRIA---GIEPDESSFSVILNACSHSGLLNEGWKFFNS--MR 900

Query: 265 DEIS-------WTSMIDGYLSVGQVSNAYYLFHNMPDR-DAVAWTAMISG 306
           +E         +  ++D    +G +S AY    +MP + D   W  ++SG
Sbjct: 901 NECGVEPKLEHYACVVDLLARMGNLSKAYKFIESMPIKPDTTIWGVLLSG 950



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 50/191 (26%), Positives = 93/191 (48%)

Query: 265 DEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMR 324
           DE     ++  Y++ G +     +F  + +     W  ++S   +   F E+  LF +M+
Sbjct: 403 DEALGAKLVFMYVNCGDLVQGRKIFDKIMNDKVFLWNLLMSEYAKIGNFRESVSLFKKMQ 462

Query: 325 AHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVID 384
             GV     TF+ +     A   +   +++H  ++K    S+  + N LI+ Y K G ++
Sbjct: 463 KLGVVGNCYTFTCVLKCFAALGKVKECKRVHGYVLKLGFGSNTAVVNSLIAAYFKFGGVE 522

Query: 385 NAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACS 444
           +A+N+F  +   D+VSWNSM+ G   +G +   L++F  ML  G   +  T + +L A +
Sbjct: 523 SAHNLFDELSEPDVVSWNSMINGCVVNGFSGNGLEIFIQMLILGVEVDLTTLVSVLVAWA 582

Query: 445 HAGLVSRGWEL 455
           + G +S G  L
Sbjct: 583 NIGNLSLGRAL 593



 Score = 48.5 bits (114), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 48/195 (24%), Positives = 83/195 (42%), Gaps = 10/195 (5%)

Query: 331 LNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIF 390
           LN+  SVL        +++ G+++H V++      D  L   L+ MY  CG +     IF
Sbjct: 369 LNSYCSVL-QLCAEKKSLEDGKRVHSVIISNGISIDEALGAKLVFMYVNCGDLVQGRKIF 427

Query: 391 SNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVS 450
             +++  +  WN ++  ++  G   E++ +F+ M + G   N  TF  +L   +  G V 
Sbjct: 428 DKIMNDKVFLWNLLMSEYAKIGNFRESVSLFKKMQKLGVVGNCYTFTCVLKCFAALGKVK 487

Query: 451 RGWELFNAMFDVYKIQPGPEHYV--SMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALL 508
               +      V K+  G    V  S+I    + G ++ A      L  EPD   W +++
Sbjct: 488 ECKRVHGY---VLKLGFGSNTAVVNSLIAAYFKFGGVESAHNLFDELS-EPDVVSWNSMI 543

Query: 509 GAC---GFCEGNAEI 520
             C   GF     EI
Sbjct: 544 NGCVVNGFSGNGLEI 558


>gi|147772562|emb|CAN67343.1| hypothetical protein VITISV_038220 [Vitis vinifera]
          Length = 732

 Score =  293 bits (749), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 198/628 (31%), Positives = 316/628 (50%), Gaps = 64/628 (10%)

Query: 15  TSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEM------ 68
           TS I  YSK G I+ A+ +F  + ++  V++  +++G+ + GR   +  LF +M      
Sbjct: 76  TSLIDFYSKNGBIEVARLVFDQLLEKTAVTWTTIIAGYTKCGRSXVSLELFAQMRETNVV 135

Query: 69  PERNVVSWTAMICGLAD---AGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARK 125
           P+R VVS     C + +    G+   A  L     E +V   N ++    +   +   RK
Sbjct: 136 PDRYVVSSVLSACSMLEFLEGGKQIHAYVL-RRGTEMDVSVVNVLIDFYTKCNRVKAGRK 194

Query: 126 VFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTW-------TSMISGYCR 178
           +F+ M +KN+ISW  MI+GY++     EA+ LF EM   N + W       TS+++    
Sbjct: 195 LFDQMVVKNIISWTTMISGYMQNSFDWEAMKLFGEM---NRLGWKPDGFACTSVLTSCGS 251

Query: 179 AGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSC 238
              +E+G  +     + N+ S   +  G   + + K +LL   + K + D     NV S 
Sbjct: 252 LEALEQGRQVHAYTIKANLESNEFVKNGLI-DMYAKSNLLX--DAKKVFDVMAEQNVISY 308

Query: 239 NSMINGYIRFGRLEEAQNLFDTVPVR---------------------------------- 264
           N+MI GY    +L EA  LF  + VR                                  
Sbjct: 309 NAMIEGYSSQEKLSEALELFHEMRVRLFPPSLLTFVSLLGVSASLFALELSKQIHGLIIK 368

Query: 265 -----DEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYL 319
                D  + +++ID Y     V +A ++F  M ++D V W AM  G  Q+    EA  L
Sbjct: 369 XGVSLDLFAGSALIDVYSKCSYVKDARHVFEEMNEKDIVVWNAMFFGYTQHLENEEALKL 428

Query: 320 FMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAK 379
           +  ++     P   TF+ L  AA   A++  G+Q H  L+K   +    + N L+ MYAK
Sbjct: 429 YSTLQFSRQKPNEFTFAALITAASNLASLRHGQQFHNQLVKMGLDFCPFVTNALVDMYAK 488

Query: 380 CGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGI 439
           CG I+ A  +F++ + RD+V WNSM+   + HG A E L +F  M++ G  PN VTF+ +
Sbjct: 489 CGSIEEARKMFNSSIWRDVVCWNSMISTHAQHGEAEEALGMFREMMKEGIQPNYVTFVAV 548

Query: 440 LSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEP 499
           LSACSHAG V  G   FN+M   + I+PG EHY  +++LLGR+GK+ EA+EF+ ++P EP
Sbjct: 549 LSACSHAGXVEDGLNHFNSM-PGFGIKPGTEHYACVVSLLGRSGKLFEAKEFIEKMPIEP 607

Query: 500 DHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLR 559
              +W +LL AC    GN E+ ++AA+  +  DP ++ ++++L NI+A+ G   +  K+R
Sbjct: 608 AAIVWRSLLSACRIA-GNVELGKYAAEMAISTDPKDSGSYILLSNIFASKGMWADVKKVR 666

Query: 560 MDMGLKGVRKVPGCSWLMRNGGIQMFLS 587
             M    V K PG SW+  N  + +F++
Sbjct: 667 DRMDSSEVVKEPGRSWIEVNNKVNVFIA 694



 Score =  174 bits (440), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 117/433 (27%), Positives = 202/433 (46%), Gaps = 47/433 (10%)

Query: 101 ERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEE 160
           +++V    S++    +NG++  AR VF+ +  K  ++W  +IAGY +C     ++ LF +
Sbjct: 69  DQDVYVGTSLIDFYSKNGBIEVARLVFDQLLEKTAVTWTTIIAGYTKCGRSXVSLELFAQ 128

Query: 161 MEERNVVTWTSMISG---------------------------------------YCRAGE 181
           M E NVV    ++S                                        Y +   
Sbjct: 129 MRETNVVPDRYVVSSVLSACSMLEFLEGGKQIHAYVLRRGTEMDVSVVNVLIDFYTKCNR 188

Query: 182 VEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMK--GICDNGNNCN--VQS 237
           V+ G  LF +M  KN++SWT MI G+  N F  E++ LF EM   G   +G  C   + S
Sbjct: 189 VKAGRKLFDQMVVKNIISWTTMISGYMQNSFDWEAMKLFGEMNRLGWKPDGFACTSVLTS 248

Query: 238 CNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDA 297
           C S+    +  GR   A  +   +   +E     +ID Y     + +A  +F  M +++ 
Sbjct: 249 CGSL--EALEQGRQVHAYTIKANLE-SNEFVKNGLIDMYAKSNLLXDAKKVFDVMAEQNV 305

Query: 298 VAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCV 357
           +++ AMI G    E   EA  LF EMR    PP   TF  L G + +   ++L +QIH +
Sbjct: 306 ISYNAMIEGYSSQEKLSEALELFHEMRVRLFPPSLLTFVSLLGVSASLFALELSKQIHGL 365

Query: 358 LMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANET 417
           ++K     DL   + LI +Y+KC  + +A ++F  M  +D+V WN+M  G++ H    E 
Sbjct: 366 IIKXGVSLDLFAGSALIDVYSKCSYVKDARHVFEEMNEKDIVVWNAMFFGYTQHLENEEA 425

Query: 418 LKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMIN 477
           LK++ ++  S   PN  TF  +++A S+   +  G +  N +  +  +   P    ++++
Sbjct: 426 LKLYSTLQFSRQKPNEFTFAALITAASNLASLRHGQQFHNQLVKM-GLDFCPFVTNALVD 484

Query: 478 LLGRAGKIKEAEE 490
           +  + G I+EA +
Sbjct: 485 MYAKCGSIEEARK 497



 Score =  102 bits (254), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 65/250 (26%), Positives = 121/250 (48%), Gaps = 8/250 (3%)

Query: 211 GFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVR-----D 265
           G+ +E+L++F++++    +G + N     S+I    + G +E+   L   V VR     D
Sbjct: 15  GYSEEALMVFVDLQR--KSGEHPNEFVLASVIRACTQLGVVEKGAQLHGFV-VRSGFDQD 71

Query: 266 EISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRA 325
               TS+ID Y   G +  A  +F  + ++ AV WT +I+G  +      +  LF +MR 
Sbjct: 72  VYVGTSLIDFYSKNGBIEVARLVFDQLLEKTAVTWTTIIAGYTKCGRSXVSLELFAQMRE 131

Query: 326 HGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDN 385
             V P     S +  A      ++ G+QIH  +++  +E D+ + N LI  Y KC  +  
Sbjct: 132 TNVVPDRYVVSSVLSACSMLEFLEGGKQIHAYVLRRGTEMDVSVVNVLIDFYTKCNRVKA 191

Query: 386 AYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSH 445
              +F  MV ++++SW +M+ G+  +    E +K+F  M   G  P+      +L++C  
Sbjct: 192 GRKLFDQMVVKNIISWTTMISGYMQNSFDWEAMKLFGEMNRLGWKPDGFACTSVLTSCGS 251

Query: 446 AGLVSRGWEL 455
              + +G ++
Sbjct: 252 LEALEQGRQV 261



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 41/166 (24%), Positives = 84/166 (50%), Gaps = 6/166 (3%)

Query: 315 EATYLFMEM-RAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCL 373
           EA  +F+++ R  G  P     + +  A      ++ G Q+H  ++++  + D+ +   L
Sbjct: 19  EALMVFVDLQRKSGEHPNEFVLASVIRACTQLGVVEKGAQLHGFVVRSGFDQDVYVGTSL 78

Query: 374 ISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNS 433
           I  Y+K G I+ A  +F  ++ +  V+W +++ G++  G +  +L++F  M E+   P+ 
Sbjct: 79  IDFYSKNGBIEVARLVFDQLLEKTAVTWTTIIAGYTKCGRSXVSLELFAQMRETNVVPDR 138

Query: 434 VTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLL 479
                +LSACS    +  G ++       Y ++ G E  VS++N+L
Sbjct: 139 YVVSSVLSACSMLEFLEGGKQI-----HAYVLRRGTEMDVSVVNVL 179


>gi|297802056|ref|XP_002868912.1| hypothetical protein ARALYDRAFT_352947 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297314748|gb|EFH45171.1| hypothetical protein ARALYDRAFT_352947 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1057

 Score =  293 bits (749), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 194/643 (30%), Positives = 313/643 (48%), Gaps = 86/643 (13%)

Query: 39  QRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEE 98
            R+V     ++  +L+ G +  AR +F+ +PE++ V+WT MI G    GR   + +LF +
Sbjct: 180 DRDVYVGTLLIDFYLKEGNIDYARLVFDALPEKSTVTWTTMISGCVKMGRSYVSLQLFYQ 239

Query: 99  MPERNVVSWNSM---------VVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECC 149
           + E NVV    +         ++  +  G+   A  +      K+    N +I  YV+C 
Sbjct: 240 LMEGNVVPDGYILSTVLSACSILPFLEGGKQIHAH-ILRYGHEKDASLMNVLIDSYVKCG 298

Query: 150 MMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPR--------------K 195
            +  A  LF+ M  +N+++WT+++SGY +    +E   LF  MP+               
Sbjct: 299 RVRAAHKLFDGMPNKNIISWTTLLSGYKQNSLHKEAMELFTSMPKFGLKPDMFACSSILT 358

Query: 196 NVVSWTAMIGGFAWNGFHKESLL--------LFIEMKGICDNGNNC----------NVQS 237
           +  S  A+  G   + +  ++ L          I+M   CD               +V  
Sbjct: 359 SCASLHALEFGTQVHAYTIKANLGNDSYVTNSLIDMYAKCDCLTEARKVFDIFAADDVVL 418

Query: 238 CNSMINGYIRFG---RLEEAQNLFDTVPVR------------------------------ 264
            N+MI GY R G    L +A N+F  +  R                              
Sbjct: 419 FNAMIEGYSRLGTQWELHDALNIFHDMRFRLIRPSLLTFVSLLRASASLTSLGLSKQIHG 478

Query: 265 ---------DEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVE 315
                    D  + +++I  Y +   + ++  +F  M  +D V W +M SG VQ     E
Sbjct: 479 LMFKFGLNLDIFAGSALIAVYSNCYCLKDSRLVFDEMKVKDLVIWNSMFSGYVQQSENEE 538

Query: 316 ATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLIS 375
           A  LF+E++     P   TF  +  AAG  A++ LG++ HC L+K   E +  + N L+ 
Sbjct: 539 ALNLFLELQLSRDRPDEFTFVDMVTAAGNLASLQLGQEFHCQLLKRGLECNPYITNALLD 598

Query: 376 MYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVT 435
           MYAKCG  ++A+  F +  SRD+V WNS++  +++HG   + L++ E M+  G  PN +T
Sbjct: 599 MYAKCGSPEDAHKAFDSAASRDVVCWNSVISSYANHGEGRKALQMLEKMMCEGIEPNYIT 658

Query: 436 FLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRL 495
           F+G+LSACSHAGLV  G + F  M   + I+P  EHYV M++LLGRAG++ EA E + ++
Sbjct: 659 FVGVLSACSHAGLVEDGLKQFELMLR-FGIEPETEHYVCMVSLLGRAGRLNEARELIEKM 717

Query: 496 PFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEE 555
           P +P   +W +LL  C    GN E+AE+AA+  +  DP ++ +  +L NIYA+ G   + 
Sbjct: 718 PTKPAAIVWRSLLSGCAKA-GNVELAEYAAEMAILSDPKDSGSFTLLSNIYASKGMWTDA 776

Query: 556 HKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
            K+R  M  +GV K PG SW+  N  + +FLS DK   +  +I
Sbjct: 777 KKVRERMKFEGVVKEPGRSWIEINKEVHIFLSKDKSHCKANQI 819



 Score =  142 bits (357), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 122/464 (26%), Positives = 195/464 (42%), Gaps = 93/464 (20%)

Query: 49  LSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGL--------------ADAGRVCEARK 94
           + G  +  RL + R L + +   NVV    ++ GL              + AG +  ARK
Sbjct: 41  IRGRREFARLLQLRALDDPLLYHNVVHGQIIVSGLELDTYLSNILMNLYSRAGGMVYARK 100

Query: 95  LFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMI-AGYVECCM--- 150
           +FE+MPERN+V+W++MV     +G   E+  VF         S N  I + +++ C    
Sbjct: 101 VFEKMPERNLVTWSTMVSACNHHGFYEESLVVFLDFWRTRKNSPNEYILSSFIQACSGLD 160

Query: 151 -MGEAIV------LFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAM 203
             G  +V      L +   +R+V   T +I  Y + G ++    +F  +P K+ V+WT M
Sbjct: 161 GSGRWMVFQLQSFLVKSRFDRDVYVGTLLIDFYLKEGNIDYARLVFDALPEKSTVTWTTM 220

Query: 204 IGGFAWNGFHKESLLLFIE-MKG-------------------------------ICDNGN 231
           I G    G    SL LF + M+G                               I   G+
Sbjct: 221 ISGCVKMGRSYVSLQLFYQLMEGNVVPDGYILSTVLSACSILPFLEGGKQIHAHILRYGH 280

Query: 232 NCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHN 291
             +    N +I+ Y++ GR+  A  LFD +P ++ ISWT+++ GY               
Sbjct: 281 EKDASLMNVLIDSYVKCGRVRAAHKLFDGMPNKNIISWTTLLSGY--------------- 325

Query: 292 MPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLG 351
                            QN L  EA  LF  M   G+ P     S +  +  +   ++ G
Sbjct: 326 ----------------KQNSLHKEAMELFTSMPKFGLKPDMFACSSILTSCASLHALEFG 369

Query: 352 RQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHH 411
            Q+H   +K    +D  + N LI MYAKC  +  A  +F    + D+V +N+M+ G+S  
Sbjct: 370 TQVHAYTIKANLGNDSYVTNSLIDMYAKCDCLTEARKVFDIFAADDVVLFNAMIEGYSRL 429

Query: 412 GLA---NETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRG 452
           G     ++ L +F  M      P+ +TF+ +L A   A L S G
Sbjct: 430 GTQWELHDALNIFHDMRFRLIRPSLLTFVSLLRAS--ASLTSLG 471



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 90/324 (27%), Positives = 159/324 (49%), Gaps = 15/324 (4%)

Query: 176 YCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNN--- 232
           Y RAG +     +F +MP +N+V+W+ M+     +GF++ESL++F++      N  N   
Sbjct: 89  YSRAGGMVYARKVFEKMPERNLVTWSTMVSACNHHGFYEESLVVFLDFWRTRKNSPNEYI 148

Query: 233 --CNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFH 290
               +Q+C S ++G  R+   +    L  +   RD    T +ID YL  G +  A  +F 
Sbjct: 149 LSSFIQAC-SGLDGSGRWMVFQLQSFLVKSRFDRDVYVGTLLIDFYLKEGNIDYARLVFD 207

Query: 291 NMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDL 350
            +P++  V WT MISG V+      +  LF ++    V P     S +  A      ++ 
Sbjct: 208 ALPEKSTVTWTTMISGCVKMGRSYVSLQLFYQLMEGNVVPDGYILSTVLSACSILPFLEG 267

Query: 351 GRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSH 410
           G+QIH  +++   E D  L N LI  Y KCG +  A+ +F  M +++++SW +++ G+  
Sbjct: 268 GKQIHAHILRYGHEKDASLMNVLIDSYVKCGRVRAAHKLFDGMPNKNIISWTTLLSGYKQ 327

Query: 411 HGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQP--G 468
           + L  E +++F SM + G  P+      IL++C+    +      F      Y I+   G
Sbjct: 328 NSLHKEAMELFTSMPKFGLKPDMFACSSILTSCASLHALE-----FGTQVHAYTIKANLG 382

Query: 469 PEHYV--SMINLLGRAGKIKEAEE 490
            + YV  S+I++  +   + EA +
Sbjct: 383 NDSYVTNSLIDMYAKCDCLTEARK 406



 Score = 62.8 bits (151), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 65/246 (26%), Positives = 97/246 (39%), Gaps = 46/246 (18%)

Query: 354 IHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGL 413
           +H  ++ +  E D  L N L+++Y++ G +  A  +F  M  R+LV+W++MV   +HHG 
Sbjct: 66  VHGQIIVSGLELDTYLSNILMNLYSRAGGMVYARKVFEKMPERNLVTWSTMVSACNHHGF 125

Query: 414 ANETLKVFESMLESGTH-PNSVTFLGILSACSHAGLVSRG-WELFNAMFDVYKIQPGPEH 471
             E+L VF     +  + PN       + ACS  GL   G W +F     + K +   + 
Sbjct: 126 YEESLVVFLDFWRTRKNSPNEYILSSFIQACS--GLDGSGRWMVFQLQSFLVKSRFDRDV 183

Query: 472 YVS--MINLLGRAGKIKEAEEFVLRLPFE------------------------------- 498
           YV   +I+   + G I  A      LP +                               
Sbjct: 184 YVGTLLIDFYLKEGNIDYARLVFDALPEKSTVTWTTMISGCVKMGRSYVSLQLFYQLMEG 243

Query: 499 ---PDHRIWGALLGACG---FCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRH 552
              PD  I   +L AC    F EG  +I  H  +   E D   A    VL + Y   GR 
Sbjct: 244 NVVPDGYILSTVLSACSILPFLEGGKQIHAHILRYGHEKD---ASLMNVLIDSYVKCGRV 300

Query: 553 VEEHKL 558
              HKL
Sbjct: 301 RAAHKL 306


>gi|147856409|emb|CAN80331.1| hypothetical protein VITISV_018275 [Vitis vinifera]
          Length = 681

 Score =  293 bits (749), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 175/544 (32%), Positives = 284/544 (52%), Gaps = 48/544 (8%)

Query: 46  NAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLF------EEM 99
           N +++ + + G L  A +LF+ MP+RN+VSWTAMI GL+   +  EA + F       E+
Sbjct: 44  NHLVNMYSKCGELDHALKLFDTMPQRNLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEV 103

Query: 100 PERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAG-----YVECCMMGEA 154
           P +   +++S +      G + E  K  + + +K  I     +       Y +C  M +A
Sbjct: 104 PTQ--FAFSSAIRACASLGSI-EMGKQMHCLALKFGIGSELFVGSNLEDMYSKCGAMFDA 160

Query: 155 IVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNV-VSWTAMIGGFAWNGFH 213
             +FEEM  ++ V+WT+MI GY + GE EE    F++M  + V +    +       G  
Sbjct: 161 CKVFEEMPCKDEVSWTAMIDGYSKIGEFEEALLAFKKMIDEEVTIDQHVLCSTLGACGAL 220

Query: 214 KESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFD-TVPVRDEISWTSM 272
           K           +   G   ++   N++ + Y + G +E A N+F      R+ +S+T +
Sbjct: 221 KACKFGRSVHSSVVKLGFESDIFVGNALTDMYSKAGDMESASNVFGIDSECRNVVSYTCL 280

Query: 273 IDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLN 332
           IDGY+   Q+                                +   +F+E+R  G+ P  
Sbjct: 281 IDGYVETEQIE-------------------------------KGLSVFVELRRQGIEPNE 309

Query: 333 ATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSN 392
            TFS L  A    A ++ G Q+H  +MK   + D  + + L+ MY KCG++++A   F  
Sbjct: 310 FTFSSLIKACANQAALEQGTQLHAQVMKINFDEDPFVSSILVDMYGKCGLLEHAIQAFDE 369

Query: 393 MVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRG 452
           +     ++WNS+V  F  HGL  + +K FE M++ G  PN++TF+ +L+ CSHAGLV  G
Sbjct: 370 IGDPTEIAWNSLVSVFGQHGLGKDAIKFFERMVDRGVKPNAITFISLLTGCSHAGLVEEG 429

Query: 453 WELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACG 512
            + F +M   Y + PG EHY  +I+LLGRAG++KEA+EF+ R+PFEP+   W + LGAC 
Sbjct: 430 LDYFYSMDKTYGVVPGEEHYSCVIDLLGRAGRLKEAKEFINRMPFEPNAFGWCSFLGACR 489

Query: 513 FCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPG 572
              G+ E+ + AA++L++L+P N+ A V+L NIYA   +  +   +RM M    V+K+PG
Sbjct: 490 I-HGDKEMGKLAAEKLVKLEPKNSGALVLLSNIYANERQWEDVRSVRMRMRDGNVKKLPG 548

Query: 573 CSWL 576
            SW+
Sbjct: 549 YSWV 552



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 104/384 (27%), Positives = 166/384 (43%), Gaps = 64/384 (16%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLF------EEMPER 71
           +  YSK G +D A  LF  MPQRN+VS+ AM+SG  QN + SEA R F       E+P +
Sbjct: 47  VNMYSKCGELDHALKLFDTMPQRNLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQ 106

Query: 72  NVVSWTAMICG---------------------------------LADAGRVCEARKLFEE 98
              S     C                                   +  G + +A K+FEE
Sbjct: 107 FAFSSAIRACASLGSIEMGKQMHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEE 166

Query: 99  MPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNV-ISWNAMIA-----GYVECCMMG 152
           MP ++ VSW +M+ G  + GE  EA   F  M  + V I  + + +     G ++ C  G
Sbjct: 167 MPCKDEVSWTAMIDGYSKIGEFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFG 226

Query: 153 EAI--VLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPR-KNVVSWTAMIGGFAW 209
            ++   + +   E ++    ++   Y +AG++E    +F      +NVVS+T +I G+  
Sbjct: 227 RSVHSSVVKLGFESDIFVGNALTDMYSKAGDMESASNVFGIDSECRNVVSYTCLIDGYVE 286

Query: 210 NGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNL--------FDTV 261
               ++ L +F+E++     G   N  + +S+I        LE+   L        FD  
Sbjct: 287 TEQIEKGLSVFVELR---RQGIEPNEFTFSSLIKACANQAALEQGTQLHAQVMKINFDED 343

Query: 262 PVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFM 321
           P    I    ++D Y   G + +A   F  + D   +AW +++S   Q+ L  +A   F 
Sbjct: 344 PFVSSI----LVDMYGKCGLLEHAIQAFDEIGDPTEIAWNSLVSVFGQHGLGKDAIKFFE 399

Query: 322 EMRAHGVPPLNATF-SVLFGAAGA 344
            M   GV P   TF S+L G + A
Sbjct: 400 RMVDRGVKPNAITFISLLTGCSHA 423



 Score = 75.1 bits (183), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 56/201 (27%), Positives = 89/201 (44%), Gaps = 33/201 (16%)

Query: 345 TANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSM 404
           T  +  G+Q+H +L+         L N L++MY+KCG +D+A  +F  M  R+LVSW +M
Sbjct: 18  TKRLRRGKQLHALLICAGYTPCTFLTNHLVNMYSKCGELDHALKLFDTMPQRNLVSWTAM 77

Query: 405 VMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGW----------- 453
           + G S +   +E ++ F  M   G  P    F   + AC+  G +  G            
Sbjct: 78  ISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIEMGKQMHCLALKFGI 137

Query: 454 --ELF------------NAMFDVYKI---QPGPEH--YVSMINLLGRAGKIKEAEEFVLR 494
             ELF             AMFD  K+    P  +   + +MI+   + G+ +EA     +
Sbjct: 138 GSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYSKIGEFEEALLAFKK 197

Query: 495 LPFEP---DHRIWGALLGACG 512
           +  E    D  +  + LGACG
Sbjct: 198 MIDEEVTIDQHVLCSTLGACG 218



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 48/187 (25%), Positives = 99/187 (52%), Gaps = 13/187 (6%)

Query: 21  YSKRGFIDEAKALFQLMPQ-RNVVSYNAMLSGFLQNGRLSEARRLFEEMP----ERNVVS 75
           YSK G ++ A  +F +  + RNVVSY  ++ G+++  ++ +   +F E+     E N  +
Sbjct: 252 YSKAGDMESASNVFGIDSECRNVVSYTCLIDGYVETEQIEKGLSVFVELRRQGIEPNEFT 311

Query: 76  WTAMICGLADAGRVCEARKLFEEMPERNVVS---WNSMVVGLI-RNGELNEARKVFNSMP 131
           ++++I   A+   + +  +L  ++ + N       +S++V +  + G L  A + F+ + 
Sbjct: 312 FSSLIKACANQAALEQGTQLHAQVMKINFDEDPFVSSILVDMYGKCGLLEHAIQAFDEIG 371

Query: 132 IKNVISWNAMIAGYVECCMMGEAIVLFEEMEER----NVVTWTSMISGYCRAGEVEEGYC 187
               I+WN++++ + +  +  +AI  FE M +R    N +T+ S+++G   AG VEEG  
Sbjct: 372 DPTEIAWNSLVSVFGQHGLGKDAIKFFERMVDRGVKPNAITFISLLTGCSHAGLVEEGLD 431

Query: 188 LFRRMPR 194
            F  M +
Sbjct: 432 YFYSMDK 438



 Score = 52.4 bits (124), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 66/319 (20%), Positives = 127/319 (39%), Gaps = 63/319 (19%)

Query: 12  VHLTSSITKYSKRGFIDEAKALFQLMP--------------------------------- 38
           V  T+ I  YSK G  +EA   F+ M                                  
Sbjct: 173 VSWTAMIDGYSKIGEFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSVHSS 232

Query: 39  ------QRNVVSYNAMLSGFLQNGRLSEARRLFEEMPE-RNVVSWTAMICGLADAGRVCE 91
                 + ++   NA+   + + G +  A  +F    E RNVVS+T +I G  +  ++ +
Sbjct: 233 VVKLGFESDIFVGNALTDMYSKAGDMESASNVFGIDSECRNVVSYTCLIDGYVETEQIEK 292

Query: 92  ARKLFEEMP----ERNVVSWNSMVVGLIRNGELNEARKV--------FNSMPIKNVISWN 139
              +F E+     E N  +++S++        L +  ++        F+  P  + I   
Sbjct: 293 GLSVFVELRRQGIEPNEFTFSSLIKACANQAALEQGTQLHAQVMKINFDEDPFVSSI--- 349

Query: 140 AMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRM----PRK 195
            ++  Y +C ++  AI  F+E+ +   + W S++S + + G  ++    F RM     + 
Sbjct: 350 -LVDMYGKCGLLEHAIQAFDEIGDPTEIAWNSLVSVFGQHGLGKDAIKFFERMVDRGVKP 408

Query: 196 NVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQ 255
           N +++ +++ G +  G  +E L  F  M             SC  +I+   R GRL+EA+
Sbjct: 409 NAITFISLLTGCSHAGLVEEGLDYFYSMDKTYGVVPGEEHYSC--VIDLLGRAGRLKEAK 466

Query: 256 NLFDTVPVR-DEISWTSMI 273
              + +P   +   W S +
Sbjct: 467 EFINRMPFEPNAFGWCSFL 485



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 37/137 (27%), Positives = 66/137 (48%), Gaps = 10/137 (7%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPER----NV 73
           +  Y K G ++ A   F  +     +++N+++S F Q+G   +A + FE M +R    N 
Sbjct: 351 VDMYGKCGLLEHAIQAFDEIGDPTEIAWNSLVSVFGQHGLGKDAIKFFERMVDRGVKPNA 410

Query: 74  VSWTAMICGLADAGRVCEARKLFEEMPERNVV----SWNSMVVGLI-RNGELNEARKVFN 128
           +++ +++ G + AG V E    F  M +   V       S V+ L+ R G L EA++  N
Sbjct: 411 ITFISLLTGCSHAGLVEEGLDYFYSMDKTYGVVPGEEHYSCVIDLLGRAGRLKEAKEFIN 470

Query: 129 SMPIK-NVISWNAMIAG 144
            MP + N   W + +  
Sbjct: 471 RMPFEPNAFGWCSFLGA 487


>gi|356498922|ref|XP_003518295.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g14470-like [Glycine max]
          Length = 682

 Score =  293 bits (749), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 184/583 (31%), Positives = 305/583 (52%), Gaps = 55/583 (9%)

Query: 33  LFQLMPQRNVVSYNAMLSGFLQNGRLSEAR-RLFEEMPERNVVS-----WTAMICGLADA 86
           +F+     NV  +  ML  + Q G  ++    LF+ M   N +      +  +I     A
Sbjct: 58  IFRAATYPNVHVFTCMLKYYSQIGATTQVVVSLFKHMQYYNDIKPYTSFYPVLIKSAGKA 117

Query: 87  GRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYV 146
           G +  A  L       + V  N+++    + G +  ARK+F+ MP +    WN +I+GY 
Sbjct: 118 GMLLHAYLLKLGHSHDHHVR-NAIMGIYAKYGCIELARKLFDEMPDRTAADWNVIISGYW 176

Query: 147 ECCMMGEAIVLFEEM--EERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMI 204
           +C    EA  LF  M   E+NV+TWT+M++G+ +   +E     F  MP + V SW AM+
Sbjct: 177 KCGNEKEATRLFCMMGESEKNVITWTTMVTGHAKMRNLETARMYFDEMPERRVASWNAML 236

Query: 205 GGFAWNGFHKESLLLFIEMKGICDNGNNCN-------VQSCNSM---------------- 241
            G+A +G  +E++ LF +M     +GN  +       + SC+S+                
Sbjct: 237 SGYAQSGAAQETVRLFDDM---LSSGNEPDETTWVTVLSSCSSLGDPCLAESIVRKLDRM 293

Query: 242 ------------INGYIRFGRLEEAQNLFDTVPV-RDEISWTSMIDGYLSVGQVSNAYYL 288
                       ++ + + G LE AQ +F+ + V ++ ++W +MI  Y  VG +S A  L
Sbjct: 294 NFRSNYFVKTALLDMHAKCGNLEVAQKIFEQLGVYKNSVTWNAMISAYARVGDLSLARDL 353

Query: 289 FHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEM-RAHGVPPLNATFSVLFGAAGATAN 347
           F+ MP+R+ V+W +MI+G  QN   ++A  LF EM  +    P   T   +F A G    
Sbjct: 354 FNKMPERNTVSWNSMIAGYAQNGESLKAIQLFKEMISSKDSKPDEVTMVSVFSACGHLGR 413

Query: 348 IDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMG 407
           + LG     +L +   +  +   N LI MY +CG +++A   F  M ++DLVS+N+++ G
Sbjct: 414 LGLGNWAVSILHENHIKLSISGYNSLIFMYLRCGSMEDARITFQEMATKDLVSYNTLISG 473

Query: 408 FSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQP 467
            + HG   E++K+   M E G  P+ +T++G+L+ACSHAGL+  GW++F ++    K+ P
Sbjct: 474 LAAHGHGTESIKLMSKMKEDGIGPDRITYIGVLTACSHAGLLEEGWKVFESI----KV-P 528

Query: 468 GPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKR 527
             +HY  MI++LGR GK++EA + +  +P EP   I+G+LL A        E+ E AA +
Sbjct: 529 DVDHYACMIDMLGRVGKLEEAVKLIQSMPMEPHAGIYGSLLNATSI-HKQVELGELAAAK 587

Query: 528 LLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKV 570
           L +++P N+  +V+L NIYA +GR  +  K+R  M  +GV+K 
Sbjct: 588 LFKVEPHNSGNYVLLSNIYALAGRWKDVDKVRDKMRKQGVKKT 630



 Score =  166 bits (421), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 138/515 (26%), Positives = 231/515 (44%), Gaps = 86/515 (16%)

Query: 21  YSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEM--PERNVVSWTA 78
           Y+K G I+ A+ LF  MP R    +N ++SG+ + G   EA RLF  M   E+NV++WT 
Sbjct: 144 YAKYGCIELARKLFDEMPDRTAADWNVIISGYWKCGNEKEATRLFCMMGESEKNVITWTT 203

Query: 79  MICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSM-------- 130
           M+ G A    +  AR  F+EMPER V SWN+M+ G  ++G   E  ++F+ M        
Sbjct: 204 MVTGHAKMRNLETARMYFDEMPERRVASWNAMLSGYAQSGAAQETVRLFDDMLSSGNEPD 263

Query: 131 ----------------PI---------------KNVISWNAMIAGYVECCMMGEAIVLFE 159
                           P                 N     A++  + +C  +  A  +FE
Sbjct: 264 ETTWVTVLSSCSSLGDPCLAESIVRKLDRMNFRSNYFVKTALLDMHAKCGNLEVAQKIFE 323

Query: 160 EME-ERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLL 218
           ++   +N VTW +MIS Y R G++     LF +MP +N VSW +MI G+A NG   +++ 
Sbjct: 324 QLGVYKNSVTWNAMISAYARVGDLSLARDLFNKMPERNTVSWNSMIAGYAQNGESLKAIQ 383

Query: 219 LFIEMKGICDNG-NNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEIS-WTSMIDGY 276
           LF EM    D+  +   + S  S      R G    A ++     ++  IS + S+I  Y
Sbjct: 384 LFKEMISSKDSKPDEVTMVSVFSACGHLGRLGLGNWAVSILHENHIKLSISGYNSLIFMY 443

Query: 277 LSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFS 336
           L  G + +A   F  M  +D V++  +ISGL  +    E+  L  +M+  G+ P   T+ 
Sbjct: 444 LRCGSMEDARITFQEMATKDLVSYNTLISGLAAHGHGTESIKLMSKMKEDGIGPDRITY- 502

Query: 337 VLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSR 396
                        +G                +L  C     +  G+++  + +F ++   
Sbjct: 503 -------------IG----------------VLTAC-----SHAGLLEEGWKVFESIKVP 528

Query: 397 DLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELF 456
           D+  +  M+      G   E +K+ +SM      P++  +  +L+A S    V  G EL 
Sbjct: 529 DVDHYACMIDMLGRVGKLEEAVKLIQSM---PMEPHAGIYGSLLNATSIHKQVELG-EL- 583

Query: 457 NAMFDVYKIQP-GPEHYVSMINLLGRAGKIKEAEE 490
            A   ++K++P    +YV + N+   AG+ K+ ++
Sbjct: 584 -AAAKLFKVEPHNSGNYVLLSNIYALAGRWKDVDK 617



 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 103/372 (27%), Positives = 169/372 (45%), Gaps = 88/372 (23%)

Query: 2   SERNHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEA 61
           SE+N     V+  T+ +T ++K   ++ A+  F  MP+R V S+NAMLSG+ Q+G   E 
Sbjct: 194 SEKN-----VITWTTMVTGHAKMRNLETARMYFDEMPERRVASWNAMLSGYAQSGAAQET 248

Query: 62  RRLFEEM----PERNVVSWTAMICGLADAGRVC--------------------------- 90
            RLF++M     E +  +W  ++   +  G  C                           
Sbjct: 249 VRLFDDMLSSGNEPDETTWVTVLSSCSSLGDPCLAESIVRKLDRMNFRSNYFVKTALLDM 308

Query: 91  --------EARKLFEEMP-ERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAM 141
                    A+K+FE++   +N V+WN+M+    R G+L+ AR +FN MP +N +SWN+M
Sbjct: 309 HAKCGNLEVAQKIFEQLGVYKNSVTWNAMISAYARVGDLSLARDLFNKMPERNTVSWNSM 368

Query: 142 IAGYVECCMMGEAIVLFEEM--------EERNVVT------------------------- 168
           IAGY +     +AI LF+EM        +E  +V+                         
Sbjct: 369 IAGYAQNGESLKAIQLFKEMISSKDSKPDEVTMVSVFSACGHLGRLGLGNWAVSILHENH 428

Query: 169 -------WTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFI 221
                  + S+I  Y R G +E+    F+ M  K++VS+  +I G A +G   ES+ L  
Sbjct: 429 IKLSISGYNSLIFMYLRCGSMEDARITFQEMATKDLVSYNTLISGLAAHGHGTESIKLMS 488

Query: 222 EMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQ 281
           +MK   ++G   +  +   ++      G LEE   +F+++ V D   +  MID    VG+
Sbjct: 489 KMK---EDGIGPDRITYIGVLTACSHAGLLEEGWKVFESIKVPDVDHYACMIDMLGRVGK 545

Query: 282 VSNAYYLFHNMP 293
           +  A  L  +MP
Sbjct: 546 LEEAVKLIQSMP 557



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 83/263 (31%), Positives = 136/263 (51%), Gaps = 21/263 (7%)

Query: 15  TSSITKYSKRGFIDEAKALF-QLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNV 73
           T+ +  ++K G ++ A+ +F QL   +N V++NAM+S + + G LS AR LF +MPERN 
Sbjct: 303 TALLDMHAKCGNLEVAQKIFEQLGVYKNSVTWNAMISAYARVGDLSLARDLFNKMPERNT 362

Query: 74  VSWTAMICGLADAGRVCEARKLFEEM--------PERNVVSWNSMVVGLIRNGELNEARK 125
           VSW +MI G A  G   +A +LF+EM         E  +VS  S    L R G  N A  
Sbjct: 363 VSWNSMIAGYAQNGESLKAIQLFKEMISSKDSKPDEVTMVSVFSACGHLGRLGLGNWAVS 422

Query: 126 VFNSMPIKNVIS-WNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEE 184
           + +   IK  IS +N++I  Y+ C  M +A + F+EM  +++V++ ++ISG    G   E
Sbjct: 423 ILHENHIKLSISGYNSLIFMYLRCGSMEDARITFQEMATKDLVSYNTLISGLAAHGHGTE 482

Query: 185 GYCLFRRMPRKNV----VSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNS 240
              L  +M    +    +++  ++   +  G  +E   +F  +K         +V     
Sbjct: 483 SIKLMSKMKEDGIGPDRITYIGVLTACSHAGLLEEGWKVFESIKV-------PDVDHYAC 535

Query: 241 MINGYIRFGRLEEAQNLFDTVPV 263
           MI+   R G+LEEA  L  ++P+
Sbjct: 536 MIDMLGRVGKLEEAVKLIQSMPM 558


>gi|449457516|ref|XP_004146494.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Cucumis sativus]
          Length = 650

 Score =  293 bits (749), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 169/458 (36%), Positives = 256/458 (55%), Gaps = 6/458 (1%)

Query: 146 VECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNV--VSWTAM 203
           V+  M    +++F ++   N   WT+MI GY   G + E    + RM R  V  VS+T  
Sbjct: 87  VDVPMGSYPLLVFGQVNYPNPFLWTAMIRGYALQGLLSESTNFYTRMRRDGVGPVSFTFS 146

Query: 204 IGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPV 263
               A        L   +  + I   G   ++   NSMI+ Y++ G L  A+ +FD +  
Sbjct: 147 ALFKACGAALNMDLGKQVHAQTILIGGFASDLYVGNSMIDLYVKCGFLGCARKVFDEMSE 206

Query: 264 RDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEM 323
           RD +SWT +I  Y   G + +A  LF ++P +D VAWTAM++G  QN    EA   F +M
Sbjct: 207 RDVVSWTELIVAYAKYGDMESASGLFDDLPLKDMVAWTAMVTGYAQNGRPKEALEYFQKM 266

Query: 324 RAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTE--SESDLILENCLISMYAKCG 381
           +  G+     T + +  A      +     I  +  ++      ++++ + LI MY+KCG
Sbjct: 267 QDVGMETDEVTLAGVISACAQLGAVKHANWIRDIAERSGFGPSGNVVVGSALIDMYSKCG 326

Query: 382 VIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILS 441
             D AY +F  M  R++ S++SM++G++ HG A+  L++F  ML++   PN VTF+GILS
Sbjct: 327 SPDEAYKVFEVMKERNVFSYSSMILGYAMHGRAHSALQLFHDMLKTEIRPNKVTFIGILS 386

Query: 442 ACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDH 501
           ACSHAGLV +G +LF  M   + + P P+HY  M++LLGRAG ++EA + V  +P EP+ 
Sbjct: 387 ACSHAGLVEQGRQLFAKMEKFFGVAPSPDHYACMVDLLGRAGCLEEALDLVKTMPMEPNG 446

Query: 502 RIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMD 561
            +WGALLGAC    GN +IA+ AA  L +L+P     +++L NIYA++GR  E  KLR  
Sbjct: 447 GVWGALLGACRI-HGNPDIAQIAANELFKLEPNGIGNYILLSNIYASAGRWEEVSKLRKV 505

Query: 562 MGLKGVRKVPGCSWLM-RNGGIQMFLSGDKIPAQVAEI 598
           +  KG +K PGCSW   +NG I  F +GD    + +EI
Sbjct: 506 IREKGFKKNPGCSWFEGKNGEIHDFFAGDTTHPRSSEI 543



 Score =  125 bits (315), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 91/348 (26%), Positives = 160/348 (45%), Gaps = 23/348 (6%)

Query: 64  LFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRN------ 117
           +F ++   N   WTAMI G A  G + E+   +  M    V   +     L +       
Sbjct: 98  VFGQVNYPNPFLWTAMIRGYALQGLLSESTNFYTRMRRDGVGPVSFTFSALFKACGAALN 157

Query: 118 ---GELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMIS 174
              G+   A+ +       ++   N+MI  YV+C  +G A  +F+EM ER+VV+WT +I 
Sbjct: 158 MDLGKQVHAQTILIGGFASDLYVGNSMIDLYVKCGFLGCARKVFDEMSERDVVSWTELIV 217

Query: 175 GYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCN 234
            Y + G++E    LF  +P K++V+WTAM+ G+A NG  KE+L  F +M+   D G   +
Sbjct: 218 AYAKYGDMESASGLFDDLPLKDMVAWTAMVTGYAQNGRPKEALEYFQKMQ---DVGMETD 274

Query: 235 VQSCNSMINGYIRFGRLEEAQNLFDTV------PVRDEISWTSMIDGYLSVGQVSNAYYL 288
             +   +I+   + G ++ A  + D        P  + +  +++ID Y   G    AY +
Sbjct: 275 EVTLAGVISACAQLGAVKHANWIRDIAERSGFGPSGNVVVGSALIDMYSKCGSPDEAYKV 334

Query: 289 FHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANI 348
           F  M +R+  ++++MI G   +     A  LF +M    + P   TF  +  A      +
Sbjct: 335 FEVMKERNVFSYSSMILGYAMHGRAHSALQLFHDMLKTEIRPNKVTFIGILSACSHAGLV 394

Query: 349 DLGRQIHCVLMK---TESESDLILENCLISMYAKCGVIDNAYNIFSNM 393
           + GRQ+   + K        D     C++ +  + G ++ A ++   M
Sbjct: 395 EQGRQLFAKMEKFFGVAPSPDHYA--CMVDLLGRAGCLEEALDLVKTM 440



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 84/296 (28%), Positives = 140/296 (47%), Gaps = 32/296 (10%)

Query: 46  NAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVV 105
           N+M+  +++ G L  AR++F+EM ER+VVSWT +I   A  G +  A  LF+++P +++V
Sbjct: 182 NSMIDLYVKCGFLGCARKVFDEMSERDVVSWTELIVAYAKYGDMESASGLFDDLPLKDMV 241

Query: 106 SWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIV---LFEEME 162
           +W +MV G  +NG   EA + F  M    + +    +AG +  C    A+       ++ 
Sbjct: 242 AWTAMVTGYAQNGRPKEALEYFQKMQDVGMETDEVTLAGVISACAQLGAVKHANWIRDIA 301

Query: 163 ER-------NVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKE 215
           ER       NVV  +++I  Y + G  +E Y +F  M  +NV S+++MI G+A +G    
Sbjct: 302 ERSGFGPSGNVVVGSALIDMYSKCGSPDEAYKVFEVMKERNVFSYSSMILGYAMHGRAHS 361

Query: 216 SLLLFIEMKGICDNGNNCN----VQSCNSMINGYIRFGR--LEEAQNLFDTVPVRDEISW 269
           +L LF +M       N       + +C+    G +  GR    + +  F   P  D   +
Sbjct: 362 ALQLFHDMLKTEIRPNKVTFIGILSACSHA--GLVEQGRQLFAKMEKFFGVAPSPDH--Y 417

Query: 270 TSMIDGYLSVGQVSNAYYLFHNMP-DRDAVAWTAM-----------ISGLVQNELF 313
             M+D     G +  A  L   MP + +   W A+           I+ +  NELF
Sbjct: 418 ACMVDLLGRAGCLEEALDLVKTMPMEPNGGVWGALLGACRIHGNPDIAQIAANELF 473



 Score =  112 bits (279), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 78/262 (29%), Positives = 134/262 (51%), Gaps = 16/262 (6%)

Query: 16  SSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVS 75
           S I  Y K GF+  A+ +F  M +R+VVS+  ++  + + G +  A  LF+++P +++V+
Sbjct: 183 SMIDLYVKCGFLGCARKVFDEMSERDVVSWTELIVAYAKYGDMESASGLFDDLPLKDMVA 242

Query: 76  WTAMICGLADAGRVCEARKLFEEMP----ERNVVSWNSMVVGLIRNGELNEARKVFNSM- 130
           WTAM+ G A  GR  EA + F++M     E + V+   ++    + G +  A  + +   
Sbjct: 243 WTAMVTGYAQNGRPKEALEYFQKMQDVGMETDEVTLAGVISACAQLGAVKHANWIRDIAE 302

Query: 131 -----PIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEG 185
                P  NV+  +A+I  Y +C    EA  +FE M+ERNV +++SMI GY   G     
Sbjct: 303 RSGFGPSGNVVVGSALIDMYSKCGSPDEAYKVFEVMKERNVFSYSSMILGYAMHGRAHSA 362

Query: 186 YCLFRRM----PRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSM 241
             LF  M     R N V++  ++   +  G  ++   LF +M+       + +  +C  M
Sbjct: 363 LQLFHDMLKTEIRPNKVTFIGILSACSHAGLVEQGRQLFAKMEKFFGVAPSPDHYAC--M 420

Query: 242 INGYIRFGRLEEAQNLFDTVPV 263
           ++   R G LEEA +L  T+P+
Sbjct: 421 VDLLGRAGCLEEALDLVKTMPM 442



 Score =  105 bits (261), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 90/328 (27%), Positives = 156/328 (47%), Gaps = 30/328 (9%)

Query: 41  NVVSYNAMLSGFLQNGRLSEARRLFEEMPERNV----VSWTAMI--CGLA---DAGRVCE 91
           N   + AM+ G+   G LSE+   +  M    V     +++A+   CG A   D G+   
Sbjct: 106 NPFLWTAMIRGYALQGLLSESTNFYTRMRRDGVGPVSFTFSALFKACGAALNMDLGKQVH 165

Query: 92  ARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMM 151
           A+ +       ++   NSM+   ++ G L  ARKVF+ M  ++V+SW  +I  Y +   M
Sbjct: 166 AQTILIGGFASDLYVGNSMIDLYVKCGFLGCARKVFDEMSERDVVSWTELIVAYAKYGDM 225

Query: 152 GEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMP----RKNVVSWTAMIGGF 207
             A  LF+++  +++V WT+M++GY + G  +E    F++M       + V+   +I   
Sbjct: 226 ESASGLFDDLPLKDMVAWTAMVTGYAQNGRPKEALEYFQKMQDVGMETDEVTLAGVISAC 285

Query: 208 AWNGF--HKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRD 265
           A  G   H   +    E  G   +G   NV   +++I+ Y + G  +EA  +F+ +  R+
Sbjct: 286 AQLGAVKHANWIRDIAERSGFGPSG---NVVVGSALIDMYSKCGSPDEAYKVFEVMKERN 342

Query: 266 EISWTSMIDGYLSVGQVSNAYYLFHNM------PDRDAVAWTAMISGLVQNELFVEATYL 319
             S++SMI GY   G+  +A  LFH+M      P++  V +  ++S      L  +   L
Sbjct: 343 VFSYSSMILGYAMHGRAHSALQLFHDMLKTEIRPNK--VTFIGILSACSHAGLVEQGRQL 400

Query: 320 FMEM-RAHGVPPLNATFSV---LFGAAG 343
           F +M +  GV P    ++    L G AG
Sbjct: 401 FAKMEKFFGVAPSPDHYACMVDLLGRAG 428



 Score = 95.1 bits (235), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 70/208 (33%), Positives = 108/208 (51%), Gaps = 19/208 (9%)

Query: 1   MSERNHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSE 60
           MSER+     VV  T  I  Y+K G ++ A  LF  +P +++V++ AM++G+ QNGR  E
Sbjct: 204 MSERD-----VVSWTELIVAYAKYGDMESASGLFDDLPLKDMVAWTAMVTGYAQNGRPKE 258

Query: 61  ARRLFEEMP----ERNVVSWTAMICGLADAGRVCEA---RKLFEEM---PERNVVSWNSM 110
           A   F++M     E + V+   +I   A  G V  A   R + E     P  NVV  +++
Sbjct: 259 ALEYFQKMQDVGMETDEVTLAGVISACAQLGAVKHANWIRDIAERSGFGPSGNVVVGSAL 318

Query: 111 VVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEER----NV 166
           +    + G  +EA KVF  M  +NV S+++MI GY        A+ LF +M +     N 
Sbjct: 319 IDMYSKCGSPDEAYKVFEVMKERNVFSYSSMILGYAMHGRAHSALQLFHDMLKTEIRPNK 378

Query: 167 VTWTSMISGYCRAGEVEEGYCLFRRMPR 194
           VT+  ++S    AG VE+G  LF +M +
Sbjct: 379 VTFIGILSACSHAGLVEQGRQLFAKMEK 406



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 49/147 (33%), Positives = 80/147 (54%), Gaps = 10/147 (6%)

Query: 7   PKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFE 66
           P   VV  ++ I  YSK G  DEA  +F++M +RNV SY++M+ G+  +GR   A +LF 
Sbjct: 308 PSGNVVVGSALIDMYSKCGSPDEAYKVFEVMKERNVFSYSSMILGYAMHGRAHSALQLFH 367

Query: 67  EMPER----NVVSWTAMICGLADAGRVCEARKLFEEMPERNVVS-----WNSMVVGLIRN 117
           +M +     N V++  ++   + AG V + R+LF +M +   V+     +  MV  L R 
Sbjct: 368 DMLKTEIRPNKVTFIGILSACSHAGLVEQGRQLFAKMEKFFGVAPSPDHYACMVDLLGRA 427

Query: 118 GELNEARKVFNSMPIK-NVISWNAMIA 143
           G L EA  +  +MP++ N   W A++ 
Sbjct: 428 GCLEEALDLVKTMPMEPNGGVWGALLG 454


>gi|297833250|ref|XP_002884507.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330347|gb|EFH60766.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 676

 Score =  293 bits (749), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 172/538 (31%), Positives = 280/538 (52%), Gaps = 17/538 (3%)

Query: 73  VVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKV------ 126
           +V W +++      G++ +A KLF+EMP R+V+S N +  G +RN E      +      
Sbjct: 90  LVVWNSLLSLYVKCGKLGDALKLFDEMPVRDVISQNIVFYGFLRNRETESGFVLLKRMLG 149

Query: 127 ---FNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEME--ERNVVTWTSMISGYCRAGE 181
              F+   +  V+S    +    E C++ + I     +   ++ +     +I+ Y + G 
Sbjct: 150 SGGFDQATLTIVLS----VCDTPEFCLVTKMIHALAILSGYDKEISVGNKLITSYFKCGC 205

Query: 182 VEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSM 241
              G  +F  M  +NV++WTA+I G   N  H++ L LF  M+    + N+    S  + 
Sbjct: 206 SVSGRWVFSEMAHRNVITWTAVISGLIENELHEDGLRLFCLMRRGLVHPNSVTYLSALAA 265

Query: 242 INGYIRFGRLEEAQNLFDTVPVRDEISWTS-MIDGYLSVGQVSNAYYLFHNMPDRDAVAW 300
            +G       ++   L     +  E+   S ++D Y   G + +A+ +F +  + D V+ 
Sbjct: 266 CSGSQMIVEGQQIHALLWKFGIESELCIESALMDMYSKCGSIEDAWKIFESSQEVDEVSM 325

Query: 301 TAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMK 360
           T ++ GL QN    EA   F+ M   GV       S + G +    ++ LG+Q+H +++K
Sbjct: 326 TVILVGLAQNGSEEEAIQFFIRMLQAGVEIDANVVSAILGVSFVDNSLGLGKQLHSLVIK 385

Query: 361 TESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKV 420
            +   +  + N LI+MY+KCG + ++  +F  M  R+ VSWNSM+  F+ HG     LK+
Sbjct: 386 RKFCGNTFVNNGLINMYSKCGDLTDSQTVFRRMPKRNYVSWNSMIAAFARHGHGLAALKL 445

Query: 421 FESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLG 480
           +E M      P  VTFL +L ACSH GL+ +G EL N M +V+ I+P  EHY  +I++LG
Sbjct: 446 YEEMTTLEVKPTDVTFLSLLHACSHVGLIDKGRELLNEMKEVHGIKPRTEHYTCIIDMLG 505

Query: 481 RAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHV 540
           RAG +KEA+ F+  LP +PD +IW ALLGAC F  G+ E+ E+AA++L E  P ++ AH+
Sbjct: 506 RAGLMKEAKSFIDSLPLKPDCKIWQALLGACSF-HGDTEVGEYAAEQLFETAPDSSAAHI 564

Query: 541 VLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
           ++ NIY++ G+  E  K    M   GV K  G SW+        F+  DK+  Q   I
Sbjct: 565 LMANIYSSRGKWKERAKTIKRMKEMGVTKETGISWIEMEKKTHSFVVEDKMHPQAEAI 622



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 106/414 (25%), Positives = 188/414 (45%), Gaps = 51/414 (12%)

Query: 160 EMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLL 219
           ++    +V W S++S Y + G++ +   LF  MP ++V+S   +  GF  N   +   +L
Sbjct: 84  DIHRNALVVWNSLLSLYVKCGKLGDALKLFDEMPVRDVISQNIVFYGFLRNRETESGFVL 143

Query: 220 FIEMKG--------------ICDNGNNCNVQS---CNSMINGYIRFGRLEEAQNLFDTVP 262
              M G              +CD    C V       ++++GY +               
Sbjct: 144 LKRMLGSGGFDQATLTIVLSVCDTPEFCLVTKMIHALAILSGYDK--------------- 188

Query: 263 VRDEIS-WTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFM 321
              EIS    +I  Y   G   +  ++F  M  R+ + WTA+ISGL++NEL  +   LF 
Sbjct: 189 ---EISVGNKLITSYFKCGCSVSGRWVFSEMAHRNVITWTAVISGLIENELHEDGLRLFC 245

Query: 322 EMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCG 381
            MR   V P + T+     A   +  I  G+QIH +L K   ES+L +E+ L+ MY+KCG
Sbjct: 246 LMRRGLVHPNSVTYLSALAACSGSQMIVEGQQIHALLWKFGIESELCIESALMDMYSKCG 305

Query: 382 VIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILS 441
            I++A+ IF +    D VS   +++G + +G   E ++ F  ML++G   ++     IL 
Sbjct: 306 SIEDAWKIFESSQEVDEVSMTVILVGLAQNGSEEEAIQFFIRMLQAGVEIDANVVSAILG 365

Query: 442 ACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVS--MINLLGRAGKIKEAEEFVLRLPFEP 499
                  +  G +L +    V K +     +V+  +IN+  + G + +++    R+P + 
Sbjct: 366 VSFVDNSLGLGKQLHSL---VIKRKFCGNTFVNNGLINMYSKCGDLTDSQTVFRRMP-KR 421

Query: 500 DHRIWGALLGACG-FCEGNAEIAEHAAKRLLELDP--------LNAPAHVVLCN 544
           ++  W +++ A      G A +  +     LE+ P        L+A +HV L +
Sbjct: 422 NYVSWNSMIAAFARHGHGLAALKLYEEMTTLEVKPTDVTFLSLLHACSHVGLID 475



 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 111/488 (22%), Positives = 201/488 (41%), Gaps = 74/488 (15%)

Query: 6   HPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLF 65
           H  +LVV   S ++ Y K G + +A  LF  MP R+V+S N +  GFL+N        L 
Sbjct: 86  HRNALVV-WNSLLSLYVKCGKLGDALKLFDEMPVRDVISQNIVFYGFLRNRETESGFVLL 144

Query: 66  EEMPERNVVSWTAM--ICGLADAGRVCEARKLFEEMP-----ERNVVSWNSMVVGLIRNG 118
           + M          +  +  + D    C   K+   +      ++ +   N ++    + G
Sbjct: 145 KRMLGSGGFDQATLTIVLSVCDTPEFCLVTKMIHALAILSGYDKEISVGNKLITSYFKCG 204

Query: 119 ELNEARKVFNSMPIKNVISWNAMIAGYVE----------CCMMGEAIV------------ 156
                R VF+ M  +NVI+W A+I+G +E           C+M   +V            
Sbjct: 205 CSVSGRWVFSEMAHRNVITWTAVISGLIENELHEDGLRLFCLMRRGLVHPNSVTYLSALA 264

Query: 157 ------LFEEMEERNVVTW-----------TSMISGYCRAGEVEEGYCLFRRMPRKNVVS 199
                 +  E ++ + + W           ++++  Y + G +E+ + +F      + VS
Sbjct: 265 ACSGSQMIVEGQQIHALLWKFGIESELCIESALMDMYSKCGSIEDAWKIFESSQEVDEVS 324

Query: 200 WTAMIGGFAWNGFHKESLLLFIEM--KGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNL 257
            T ++ G A NG  +E++  FI M   G+  + N  +     S ++  +  G+      L
Sbjct: 325 MTVILVGLAQNGSEEEAIQFFIRMLQAGVEIDANVVSAILGVSFVDNSLGLGK-----QL 379

Query: 258 FDTVPVRDEISWT----SMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELF 313
              V  R     T     +I+ Y   G ++++  +F  MP R+ V+W +MI+   ++   
Sbjct: 380 HSLVIKRKFCGNTFVNNGLINMYSKCGDLTDSQTVFRRMPKRNYVSWNSMIAAFARHGHG 439

Query: 314 VEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGR-------QIHCVLMKTESESD 366
           + A  L+ EM    V P + TF  L  A      ID GR       ++H +  +TE  + 
Sbjct: 440 LAALKLYEEMTTLEVKPTDVTFLSLLHACSHVGLIDKGRELLNEMKEVHGIKPRTEHYT- 498

Query: 367 LILENCLISMYAKCGVIDNAYNIFSNM-VSRDLVSWNSMVMGFSHHGLANETLKVFESML 425
                C+I M  + G++  A +   ++ +  D   W +++   S HG         E + 
Sbjct: 499 -----CIIDMLGRAGLMKEAKSFIDSLPLKPDCKIWQALLGACSFHGDTEVGEYAAEQLF 553

Query: 426 ESGTHPNS 433
           E  T P+S
Sbjct: 554 E--TAPDS 559



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 58/224 (25%), Positives = 106/224 (47%), Gaps = 25/224 (11%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNV---- 73
           I  YSK G + +++ +F+ MP+RN VS+N+M++ F ++G    A +L+EEM    V    
Sbjct: 399 INMYSKCGDLTDSQTVFRRMPKRNYVSWNSMIAAFARHGHGLAALKLYEEMTTLEVKPTD 458

Query: 74  VSWTAMICGLADAGRVCEARKLFEEMPERNVVS-----WNSMVVGLIRNGELNEARKVFN 128
           V++ +++   +  G + + R+L  EM E + +      +  ++  L R G + EA+   +
Sbjct: 459 VTFLSLLHACSHVGLIDKGRELLNEMKEVHGIKPRTEHYTCIIDMLGRAGLMKEAKSFID 518

Query: 129 SMPIK-NVISWNAMIAGYVECCMMGEAIV-------LFEEMEERNVVTWTSMISGYCRAG 180
           S+P+K +   W A++     C   G+  V       LFE   + +      M + Y   G
Sbjct: 519 SLPLKPDCKIWQALLGA---CSFHGDTEVGEYAAEQLFETAPDSSAAH-ILMANIYSSRG 574

Query: 181 EVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMK 224
           + +E     +RM    V   T    G +W    K++    +E K
Sbjct: 575 KWKERAKTIKRMKEMGVTKET----GISWIEMEKKTHSFVVEDK 614



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 73/295 (24%), Positives = 124/295 (42%), Gaps = 52/295 (17%)

Query: 21  YSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNV---VSWT 77
           YSK G I++A  +F+   + + VS   +L G  QNG   EA + F  M +  V    +  
Sbjct: 301 YSKCGSIEDAWKIFESSQEVDEVSMTVILVGLAQNGSEEEAIQFFIRMLQAGVEIDANVV 360

Query: 78  AMICGLADAGRVCEARKLFEEMPERNVVSWNSMV-VGLI----RNGELNEARKVFNSMPI 132
           + I G++         K    +  +     N+ V  GLI    + G+L +++ VF  MP 
Sbjct: 361 SAILGVSFVDNSLGLGKQLHSLVIKRKFCGNTFVNNGLINMYSKCGDLTDSQTVFRRMPK 420

Query: 133 KNVISWNAMIAGYVECCMMGEAIVLFEEMEERNV----VTWTSMISGYCRAGEVEEGYCL 188
           +N +SWN+MIA +        A+ L+EEM    V    VT+ S++      G +++G  L
Sbjct: 421 RNYVSWNSMIAAFARHGHGLAALKLYEEMTTLEVKPTDVTFLSLLHACSHVGLIDKGREL 480

Query: 189 FRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRF 248
              M                             E+ GI         +    +I+   R 
Sbjct: 481 LNEMK----------------------------EVHGI-----KPRTEHYTCIIDMLGRA 507

Query: 249 GRLEEAQNLFDTVPVRDEIS-WTSMI-----DGYLSVGQVSNAYYLFHNMPDRDA 297
           G ++EA++  D++P++ +   W +++      G   VG+ + A  LF   PD  A
Sbjct: 508 GLMKEAKSFIDSLPLKPDCKIWQALLGACSFHGDTEVGEYA-AEQLFETAPDSSA 561


>gi|224057446|ref|XP_002299231.1| predicted protein [Populus trichocarpa]
 gi|222846489|gb|EEE84036.1| predicted protein [Populus trichocarpa]
          Length = 668

 Score =  293 bits (749), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 192/599 (32%), Positives = 308/599 (51%), Gaps = 31/599 (5%)

Query: 26  FIDEAKALFQLMP-QRNVVSYNAMLSGFLQNG-----RLSEAR------RLFEEMPERNV 73
            ++  K+  QL   Q  ++    +L GF  +       +SE+R      ++   +   NV
Sbjct: 59  LLENCKSFSQLKQIQAQMILTGLILDGFASSRLISFCAISESRNLDYCIKILNNLQNPNV 118

Query: 74  VSWTAMICGLADAGRVCEARKLFEEM-------PERNVVSW-----NSMVVGLIRNGELN 121
            SW A+I G  ++    +   L++ M       P+    S+      ++V+  +    L 
Sbjct: 119 FSWNAVIRGCVESENPQKGLVLYKRMLTRAGCRPDNYTYSFLFKVCANLVLSYMGFEILG 178

Query: 122 EARKV-FNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAG 180
           +  K+ F+    K++  +N +I   V     G A  +F+E   R++V+W S+I+GY R  
Sbjct: 179 QVLKMGFD----KDMYLYNGIIHMLVSVGESGLAHKVFDEGCVRDLVSWNSLINGYVRRR 234

Query: 181 EVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEM-KGICDNGNNCNVQSCN 239
           +  E   ++++M  ++V      + G        ESL L  E+ + I ++G N  +   N
Sbjct: 235 QPREAMGIYQQMITEHVKPDEVTMIGVVSACAQLESLKLGREIHRYIEESGLNLKISLVN 294

Query: 240 SMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVA 299
           ++++ Y++ G LE  + LFD +  +  +SWT+MI GY   G +  A  LFH+MP+++ VA
Sbjct: 295 ALMDMYVKCGDLEAGKVLFDNMRKKTVVSWTTMIVGYAKNGLLDMAGKLFHDMPEKNVVA 354

Query: 300 WTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLM 359
           W AMI   VQ  L  EA  LF EM+   + P   T      A      +D G   H  + 
Sbjct: 355 WNAMIGSCVQANLSFEALELFREMQWSNMKPDKVTMLHCLSACSQLGALDTGMWTHNYIK 414

Query: 360 KTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLK 419
           K     D+ L   LI MYAKCG +  A  +F+ M  R+ ++W +++ G + +G  N+ + 
Sbjct: 415 KHNLSLDVALGTALIDMYAKCGNMTKALQVFNEMPRRNSLTWTAIIGGLALYGNVNDAIF 474

Query: 420 VFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLL 479
            F  M++SG  P+ +TFLG+L+AC H GLV  G + F+ M   + + P P+HY  M+NLL
Sbjct: 475 YFSKMIDSGLMPDEITFLGVLTACCHGGLVEEGRKYFDQMKSRFNLSPQPKHYSCMVNLL 534

Query: 480 GRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAH 539
           GRAG ++EAEE +  +P E D  +WGAL  ACG    N  I E AA +LL+LDP ++  +
Sbjct: 535 GRAGLLEEAEELIKTMPMEADAMVWGALFFACGI-HRNLLIGERAASKLLDLDPHDSGIY 593

Query: 540 VVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
           V+L N+Y  +G+  E   +R  M  +GV K PG S +  NG I  F+  DK   Q  +I
Sbjct: 594 VLLANMYREAGKWEEAQNIRKMMMERGVEKTPGSSSIEVNGIINEFIVRDKSHPQSEQI 652



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 82/265 (30%), Positives = 127/265 (47%), Gaps = 15/265 (5%)

Query: 21  YSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMI 80
           Y K G ++  K LF  M ++ VVS+  M+ G+ +NG L  A +LF +MPE+NVV+W AMI
Sbjct: 300 YVKCGDLEAGKVLFDNMRKKTVVSWTTMIVGYAKNGLLDMAGKLFHDMPEKNVVAWNAMI 359

Query: 81  CGLADAGRVCEARKLFEEMPERNV----VSWNSMVVGLIRNGELNEARKVFNSMPIKN-- 134
                A    EA +LF EM   N+    V+    +    + G L+      N +   N  
Sbjct: 360 GSCVQANLSFEALELFREMQWSNMKPDKVTMLHCLSACSQLGALDTGMWTHNYIKKHNLS 419

Query: 135 --VISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRM 192
             V    A+I  Y +C  M +A+ +F EM  RN +TWT++I G    G V +    F +M
Sbjct: 420 LDVALGTALIDMYAKCGNMTKALQVFNEMPRRNSLTWTAIIGGLALYGNVNDAIFYFSKM 479

Query: 193 PRKNV----VSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRF 248
               +    +++  ++      G  +E    F +MK   +        SC  M+N   R 
Sbjct: 480 IDSGLMPDEITFLGVLTACCHGGLVEEGRKYFDQMKSRFNLSPQPKHYSC--MVNLLGRA 537

Query: 249 GRLEEAQNLFDTVPVR-DEISWTSM 272
           G LEEA+ L  T+P+  D + W ++
Sbjct: 538 GLLEEAEELIKTMPMEADAMVWGAL 562



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 81/303 (26%), Positives = 134/303 (44%), Gaps = 55/303 (18%)

Query: 5   NHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRL 64
           N  K  VV  T+ I  Y+K G +D A  LF  MP++NVV++NAM+   +Q     EA  L
Sbjct: 315 NMRKKTVVSWTTMIVGYAKNGLLDMAGKLFHDMPEKNVVAWNAMIGSCVQANLSFEALEL 374

Query: 65  FEEM------PER---------------------------------NVVSWTAMICGLAD 85
           F EM      P++                                 +V   TA+I   A 
Sbjct: 375 FREMQWSNMKPDKVTMLHCLSACSQLGALDTGMWTHNYIKKHNLSLDVALGTALIDMYAK 434

Query: 86  AGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGY 145
            G + +A ++F EMP RN ++W +++ GL   G +N+A   F+ M    ++       G 
Sbjct: 435 CGNMTKALQVFNEMPRRNSLTWTAIIGGLALYGNVNDAIFYFSKMIDSGLMPDEITFLGV 494

Query: 146 VECCMMG----EAIVLFEEMEERNVVT-----WTSMISGYCRAGEVEEGYCLFRRMPRK- 195
           +  C  G    E    F++M+ R  ++     ++ M++   RAG +EE   L + MP + 
Sbjct: 495 LTACCHGGLVEEGRKYFDQMKSRFNLSPQPKHYSCMVNLLGRAGLLEEAEELIKTMPMEA 554

Query: 196 NVVSWTAMIGGFAWNGFHKESLLLFIEMKGICD-NGNNCNVQSCNSMINGYIRFGRLEEA 254
           + + W A+   F   G H+  L+       + D + ++  +     + N Y   G+ EEA
Sbjct: 555 DAMVWGAL---FFACGIHRNLLIGERAASKLLDLDPHDSGIYVL--LANMYREAGKWEEA 609

Query: 255 QNL 257
           QN+
Sbjct: 610 QNI 612


>gi|354805230|gb|AER41645.1| CRR4 [Oryza punctata]
          Length = 632

 Score =  293 bits (749), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 161/476 (33%), Positives = 248/476 (52%), Gaps = 40/476 (8%)

Query: 124 RKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVE 183
           R+VF+ M  K+V+SWN+++  Y+       A+ LFE M ERNVV+W ++++G+ R G++ 
Sbjct: 170 RQVFDEMVDKDVVSWNSIVGVYMSSGDATGAMGLFEAMPERNVVSWNTVVAGFARTGDMV 229

Query: 184 EGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMIN 243
               +F RMP +N VSW                                      N MI+
Sbjct: 230 TARTVFDRMPSRNAVSW--------------------------------------NLMIS 251

Query: 244 GYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAM 303
           GY   G +E A+++FD +  +D +SWT+M+  Y  +G +  A  LF +MP ++ V+W AM
Sbjct: 252 GYATSGDVEAARSVFDRMDQKDVVSWTAMVSAYAKIGDLDTAKELFDHMPVKNLVSWNAM 311

Query: 304 ISGLVQNELFVEATYLFMEMRAHG-VPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTE 362
           I+G   N  + EA   F  M   G   P  AT   +  A     +++    I   + K+ 
Sbjct: 312 ITGYNHNSRYDEALRTFQLMMLEGRFRPDEATLVSVVSACAQLGSVEYCNWISSFIGKSN 371

Query: 363 SESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFE 422
           +   + L N LI M+AKCG +  A +IF  M +R +++W +M+ GF+ +GL  E L V+ 
Sbjct: 372 THLTVALGNALIDMFAKCGDVGRAQSIFYKMETRCIITWTTMISGFAFNGLCREALLVYN 431

Query: 423 SMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRA 482
           +M   G   +   F+  L+AC+H GL+  GW +FN M + Y IQP  EHY  +++LLGRA
Sbjct: 432 NMCREGVELDGTVFIAALAACTHGGLLQEGWSIFNEMVEQYNIQPRMEHYGCVVDLLGRA 491

Query: 483 GKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVL 542
           G ++EA  F+  +P EP   IW  LL +C    GNAE+ E+ +K++ EL+P N+   V++
Sbjct: 492 GNLQEAILFIESMPLEPSVVIWVTLLSSC-VAHGNAELIEYVSKKITELEPFNSSYQVLV 550

Query: 543 CNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
            N  A  GR       R  M   G+ KVPG S +     +  FL+ D    +  EI
Sbjct: 551 SNCSALEGRWDGVIGARTSMRNWGIEKVPGSSLIQVGSEVHEFLAKDTRHERRKEI 606



 Score =  173 bits (438), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 115/390 (29%), Positives = 195/390 (50%), Gaps = 12/390 (3%)

Query: 62  RRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELN 121
           R++F+EM +++VVSW +++     +G    A  LFE MPERNVVSWN++V G  R G++ 
Sbjct: 170 RQVFDEMVDKDVVSWNSIVGVYMSSGDATGAMGLFEAMPERNVVSWNTVVAGFARTGDMV 229

Query: 122 EARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGE 181
            AR VF+ MP +N +SWN MI+GY     +  A  +F+ M++++VV+WT+M+S Y + G+
Sbjct: 230 TARTVFDRMPSRNAVSWNLMISGYATSGDVEAARSVFDRMDQKDVVSWTAMVSAYAKIGD 289

Query: 182 VEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSM 241
           ++    LF  MP KN+VSW AMI G+  N  + E+L  F  M  + +     +  +  S+
Sbjct: 290 LDTAKELFDHMPVKNLVSWNAMITGYNHNSRYDEALRTFQLM--MLEGRFRPDEATLVSV 347

Query: 242 INGYIRFGRLEEAQNLFDTVPVRDEISWT-----SMIDGYLSVGQVSNAYYLFHNMPDRD 296
           ++   + G +E   N   +   +     T     ++ID +   G V  A  +F+ M  R 
Sbjct: 348 VSACAQLGSVEYC-NWISSFIGKSNTHLTVALGNALIDMFAKCGDVGRAQSIFYKMETRC 406

Query: 297 AVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHC 356
            + WT MISG   N L  EA  ++  M   GV      F     A      +  G  I  
Sbjct: 407 IITWTTMISGFAFNGLCREALLVYNNMCREGVELDGTVFIAALAACTHGGLLQEGWSIFN 466

Query: 357 VLMKTES-ESDLILENCLISMYAKCGVIDNAYNIFSNM-VSRDLVSWNSMVMGFSHHGLA 414
            +++  + +  +    C++ +  + G +  A     +M +   +V W +++     HG  
Sbjct: 467 EMVEQYNIQPRMEHYGCVVDLLGRAGNLQEAILFIESMPLEPSVVIWVTLLSSCVAHG-- 524

Query: 415 NETLKVFESMLESGTHPNSVTFLGILSACS 444
           N  L  + S   +   P + ++  ++S CS
Sbjct: 525 NAELIEYVSKKITELEPFNSSYQVLVSNCS 554



 Score =  166 bits (419), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 110/382 (28%), Positives = 183/382 (47%), Gaps = 55/382 (14%)

Query: 11  VVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPE 70
           VV   S +  Y   G    A  LF+ MP+RNVVS+N +++GF + G +  AR +F+ MP 
Sbjct: 181 VVSWNSIVGVYMSSGDATGAMGLFEAMPERNVVSWNTVVAGFARTGDMVTARTVFDRMPS 240

Query: 71  RNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSM 130
           RN VSW  MI G A +G V  AR +F+ M +++VVSW +MV    + G+L+ A+++F+ M
Sbjct: 241 RNAVSWNLMISGYATSGDVEAARSVFDRMDQKDVVSWTAMVSAYAKIGDLDTAKELFDHM 300

Query: 131 PIKNVISWNAMIAGYVECCMMGEAIVLFEEM--------EERNVVT-------------- 168
           P+KN++SWNAMI GY       EA+  F+ M        +E  +V+              
Sbjct: 301 PVKNLVSWNAMITGYNHNSRYDEALRTFQLMMLEGRFRPDEATLVSVVSACAQLGSVEYC 360

Query: 169 -WTS-----------------MISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWN 210
            W S                 +I  + + G+V     +F +M  + +++WT MI GFA+N
Sbjct: 361 NWISSFIGKSNTHLTVALGNALIDMFAKCGDVGRAQSIFYKMETRCIITWTTMISGFAFN 420

Query: 211 GFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEIS-- 268
           G  +E+LL++  M   C  G   +     + +      G L+E  ++F+ +  +  I   
Sbjct: 421 GLCREALLVYNNM---CREGVELDGTVFIAALAACTHGGLLQEGWSIFNEMVEQYNIQPR 477

Query: 269 ---WTSMIDGYLSVGQVSNAYYLFHNMP-DRDAVAWTAMISGLVQ--NELFVEATYLFME 322
              +  ++D     G +  A     +MP +   V W  ++S  V   N   +E    ++ 
Sbjct: 478 MEHYGCVVDLLGRAGNLQEAILFIESMPLEPSVVIWVTLLSSCVAHGNAELIE----YVS 533

Query: 323 MRAHGVPPLNATFSVLFGAAGA 344
            +   + P N+++ VL     A
Sbjct: 534 KKITELEPFNSSYQVLVSNCSA 555



 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 95/308 (30%), Positives = 158/308 (51%), Gaps = 24/308 (7%)

Query: 31  KALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVC 90
           + +F  M  ++VVS+N+++  ++ +G  + A  LFE MPERNVVSW  ++ G A  G + 
Sbjct: 170 RQVFDEMVDKDVVSWNSIVGVYMSSGDATGAMGLFEAMPERNVVSWNTVVAGFARTGDMV 229

Query: 91  EARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCM 150
            AR +F+ MP RN VSWN M+ G   +G++  AR VF+ M  K+V+SW AM++ Y +   
Sbjct: 230 TARTVFDRMPSRNAVSWNLMISGYATSGDVEAARSVFDRMDQKDVVSWTAMVSAYAKIGD 289

Query: 151 MGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRM-------PRK----NVVS 199
           +  A  LF+ M  +N+V+W +MI+GY      +E    F+ M       P +    +VVS
Sbjct: 290 LDTAKELFDHMPVKNLVSWNAMITGYNHNSRYDEALRTFQLMMLEGRFRPDEATLVSVVS 349

Query: 200 WTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFD 259
             A +G   +  +             I  +  +  V   N++I+ + + G +  AQ++F 
Sbjct: 350 ACAQLGSVEYCNWISSF---------IGKSNTHLTVALGNALIDMFAKCGDVGRAQSIFY 400

Query: 260 TVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNM----PDRDAVAWTAMISGLVQNELFVE 315
            +  R  I+WT+MI G+   G    A  +++NM     + D   + A ++      L  E
Sbjct: 401 KMETRCIITWTTMISGFAFNGLCREALLVYNNMCREGVELDGTVFIAALAACTHGGLLQE 460

Query: 316 ATYLFMEM 323
              +F EM
Sbjct: 461 GWSIFNEM 468



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 89/325 (27%), Positives = 156/325 (48%), Gaps = 52/325 (16%)

Query: 1   MSERNHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSE 60
           M ERN     VV   + +  +++ G +  A+ +F  MP RN VS+N M+SG+  +G +  
Sbjct: 207 MPERN-----VVSWNTVVAGFARTGDMVTARTVFDRMPSRNAVSWNLMISGYATSGDVEA 261

Query: 61  ARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGEL 120
           AR +F+ M +++VVSWTAM+   A  G +  A++LF+ MP +N+VSWN+M+ G   N   
Sbjct: 262 ARSVFDRMDQKDVVSWTAMVSAYAKIGDLDTAKELFDHMPVKNLVSWNAMITGYNHNSRY 321

Query: 121 NEARKVFNSMPIK-----------NVIS------------W-----------------NA 140
           +EA + F  M ++           +V+S            W                 NA
Sbjct: 322 DEALRTFQLMMLEGRFRPDEATLVSVVSACAQLGSVEYCNWISSFIGKSNTHLTVALGNA 381

Query: 141 MIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNV--- 197
           +I  + +C  +G A  +F +ME R ++TWT+MISG+   G   E   ++  M R+ V   
Sbjct: 382 LIDMFAKCGDVGRAQSIFYKMETRCIITWTTMISGFAFNGLCREALLVYNNMCREGVELD 441

Query: 198 -VSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQN 256
              + A +      G  +E   +F EM  +        ++    +++   R G L+EA  
Sbjct: 442 GTVFIAALAACTHGGLLQEGWSIFNEM--VEQYNIQPRMEHYGCVVDLLGRAGNLQEAIL 499

Query: 257 LFDTVPVRDEIS-WTSMIDGYLSVG 280
             +++P+   +  W +++   ++ G
Sbjct: 500 FIESMPLEPSVVIWVTLLSSCVAHG 524



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 53/199 (26%), Positives = 93/199 (46%), Gaps = 21/199 (10%)

Query: 320 FMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCV---LMKTESESDLILENCLISM 376
           ++ MRA GVPP   TF+ L  A    A + L R   CV   +++    SD+ ++N L+ +
Sbjct: 98  YVAMRAQGVPPNGFTFTFLLRAC---ALLGLPRPCGCVHGQIVRCGFGSDVFVQNALMDV 154

Query: 377 YAKCGVIDNAY-----NIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHP 431
           Y +CG            +F  MV +D+VSWNS+V  +   G A   + +FE+M E     
Sbjct: 155 YYRCGGGGAGGVGAARQVFDEMVDKDVVSWNSIVGVYMSSGDATGAMGLFEAMPER---- 210

Query: 432 NSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEF 491
           N V++  +++  +  G +     +F+ M     +      +  MI+    +G ++ A   
Sbjct: 211 NVVSWNTVVAGFARTGDMVTARTVFDRMPSRNAVS-----WNLMISGYATSGDVEAARSV 265

Query: 492 VLRLPFEPDHRIWGALLGA 510
             R+  + D   W A++ A
Sbjct: 266 FDRMD-QKDVVSWTAMVSA 283


>gi|225439799|ref|XP_002273893.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g37310-like [Vitis vinifera]
          Length = 667

 Score =  292 bits (748), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 174/598 (29%), Positives = 298/598 (49%), Gaps = 59/598 (9%)

Query: 52  FLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMV 111
            L+  +   AR +   +   N ++ + +I   + +  + EA K+F+++ ++N+ SWN+M+
Sbjct: 49  LLRQAKQLHARIVLSSLTPDNFLA-SKLITFYSKSNHLYEAHKVFDKILDKNIFSWNAML 107

Query: 112 VGL-IRNGELNEARK---------------------VFNSMPI----------------- 132
           +G  I N  ++                         V  ++ +                 
Sbjct: 108 IGYSIHNMHVHTLNLLSSLLPSYSLTLKPDNFTITCVLKALSVLFPDSILAKEVQCFVLR 167

Query: 133 ----KNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCL 188
                ++   NA+I  Y  C   G A +LF+ M +R++V+W SMI+GY + G  E+   L
Sbjct: 168 HGFDSDIFVVNALITYYSRCDEYGIARILFDRMHDRDIVSWNSMIAGYSQGGFYEDCKEL 227

Query: 189 FRRMP-----RKNVVSWTAMIGGFAWNG---FHKESLLLFIEMKGICDNGNNCNVQSCNS 240
           +R+M      R N V+  +++   A      F  +     IE K   D      V + NS
Sbjct: 228 YRKMLDSTGLRPNGVTVVSVLQACAQTNDLVFGMKVHQFIIERKVEMD------VSAHNS 281

Query: 241 MINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAW 300
           +I  Y + G L+ A+ LF+ +  +DE+++ S++ GY++ G V  A  LF  M +     W
Sbjct: 282 LIGLYAKCGSLDYARELFNEMSNKDEVTYGSIVSGYMTHGFVDKAMDLFREMKNPRLSTW 341

Query: 301 TAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMK 360
            A+ISGLVQN        L  EM+  G  P   T S +       +N+  G+ IH   ++
Sbjct: 342 NAVISGLVQNNCNEGILELVQEMQEFGFRPNAVTLSSILPTFSCFSNLKGGKAIHAYAIR 401

Query: 361 TESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKV 420
                ++ +   +I  YAK G +  A  +F     R L+ W +++  +S HG AN  L++
Sbjct: 402 NGYAHNIYVATSIIDAYAKLGFLRGAQWVFDQSKDRSLIVWTAIISAYSAHGDANAALRL 461

Query: 421 FESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLG 480
           F  ML +GT P+ VTF  +L+AC+H+G+V+  W++F+ MF  Y  QP  EHY  M+ +L 
Sbjct: 462 FGDMLSNGTQPDPVTFTAVLAACAHSGMVNEAWKIFDEMFLKYGFQPCVEHYACMVGVLS 521

Query: 481 RAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHV 540
           RAG + EA EF+ ++P EP+ ++WGALL       G+ E+ +     L  ++P N   +V
Sbjct: 522 RAGMLSEAAEFICKMPIEPNAKVWGALLNGVS-VSGDVELGKFVCDHLFNMEPENTGNYV 580

Query: 541 VLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
           ++ N+Y+ +GR  E   +R  M   G++K+PG SW+  +GG++ F++ D    +  EI
Sbjct: 581 IMANLYSQAGRWEEAENIREKMKKIGLKKIPGTSWIETSGGLRSFIARDVSSERSEEI 638



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 115/468 (24%), Positives = 210/468 (44%), Gaps = 63/468 (13%)

Query: 41  NVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMP 100
           ++   NA+++ + +      AR LF+ M +R++VSW +MI G +  G   + ++L+ +M 
Sbjct: 173 DIFVVNALITYYSRCDEYGIARILFDRMHDRDIVSWNSMIAGYSQGGFYEDCKELYRKML 232

Query: 101 ER-----NVVSWNSMVVGLIRNGELNEARKVFNSMPIK----NVISWNAMIAGYVECCMM 151
           +      N V+  S++    +  +L    KV   +  +    +V + N++I  Y +C  +
Sbjct: 233 DSTGLRPNGVTVVSVLQACAQTNDLVFGMKVHQFIIERKVEMDVSAHNSLIGLYAKCGSL 292

Query: 152 GEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNG 211
             A  LF EM  ++ VT+ S++SGY   G V++   LFR M    + +W A+I G   N 
Sbjct: 293 DYARELFNEMSNKDEVTYGSIVSGYMTHGFVDKAMDLFREMKNPRLSTWNAVISGLVQNN 352

Query: 212 FHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISW-- 269
            ++  L L  EM+   + G   N  + +S++  +  F  L+  + +     +R+  +   
Sbjct: 353 CNEGILELVQEMQ---EFGFRPNAVTLSSILPTFSCFSNLKGGKAI-HAYAIRNGYAHNI 408

Query: 270 ---TSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAH 326
              TS+ID Y  +G +  A ++F    DR  + WTA+IS    +     A  LF +M ++
Sbjct: 409 YVATSIIDAYAKLGFLRGAQWVFDQSKDRSLIVWTAIISAYSAHGDANAALRLFGDMLSN 468

Query: 327 GVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNA 386
           G  P   TF+ +  A                                    A  G+++ A
Sbjct: 469 GTQPDPVTFTAVLAAC-----------------------------------AHSGMVNEA 493

Query: 387 YNIFSNMVSRD-----LVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILS 441
           + IF  M  +      +  +  MV   S  G+ +E     E + +    PN+  +  +L+
Sbjct: 494 WKIFDEMFLKYGFQPCVEHYACMVGVLSRAGMLSEAA---EFICKMPIEPNAKVWGALLN 550

Query: 442 ACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAE 489
             S +G V  G  + + +F++     G  +YV M NL  +AG+ +EAE
Sbjct: 551 GVSVSGDVELGKFVCDHLFNMEPENTG--NYVIMANLYSQAGRWEEAE 596



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 96/352 (27%), Positives = 172/352 (48%), Gaps = 43/352 (12%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPER-----N 72
           IT YS+      A+ LF  M  R++VS+N+M++G+ Q G   + + L+ +M +      N
Sbjct: 181 ITYYSRCDEYGIARILFDRMHDRDIVSWNSMIAGYSQGGFYEDCKELYRKMLDSTGLRPN 240

Query: 73  VVSWTAMICGLADAGRVCEARKLFEEMPERNV---VSWNSMVVGLI-RNGELNEARKVFN 128
            V+  +++   A    +    K+ + + ER V   VS ++ ++GL  + G L+ AR++FN
Sbjct: 241 GVTVVSVLQACAQTNDLVFGMKVHQFIIERKVEMDVSAHNSLIGLYAKCGSLDYARELFN 300

Query: 129 SMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGY----CRAGEVEE 184
            M  K+ +++ ++++GY+    + +A+ LF EM+   + TW ++ISG     C  G +E 
Sbjct: 301 EMSNKDEVTYGSIVSGYMTHGFVDKAMDLFREMKNPRLSTWNAVISGLVQNNCNEGILE- 359

Query: 185 GYCLFRRMP----RKNVVSWTAMIGGFAWNGFHKESLLLFIEMKG-------ICDNGNNC 233
              L + M     R N V+ ++++  F+           F  +KG          NG   
Sbjct: 360 ---LVQEMQEFGFRPNAVTLSSILPTFS----------CFSNLKGGKAIHAYAIRNGYAH 406

Query: 234 NVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNM- 292
           N+    S+I+ Y + G L  AQ +FD    R  I WT++I  Y + G  + A  LF +M 
Sbjct: 407 NIYVATSIIDAYAKLGFLRGAQWVFDQSKDRSLIVWTAIISAYSAHGDANAALRLFGDML 466

Query: 293 ---PDRDAVAWTAMISGLVQNELFVEATYLFMEM-RAHGVPPLNATFSVLFG 340
                 D V +TA+++    + +  EA  +F EM   +G  P    ++ + G
Sbjct: 467 SNGTQPDPVTFTAVLAACAHSGMVNEAWKIFDEMFLKYGFQPCVEHYACMVG 518



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 81/336 (24%), Positives = 152/336 (45%), Gaps = 20/336 (5%)

Query: 16  SSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVS 75
           S I  Y+K G +D A+ LF  M  ++ V+Y +++SG++ +G + +A  LF EM    + +
Sbjct: 281 SLIGLYAKCGSLDYARELFNEMSNKDEVTYGSIVSGYMTHGFVDKAMDLFREMKNPRLST 340

Query: 76  WTAMICGLADAGRVCEARKLFEEMPE----RNVVSWNSMVVGL-----IRNGELNEARKV 126
           W A+I GL          +L +EM E     N V+ +S++        ++ G+   A  +
Sbjct: 341 WNAVISGLVQNNCNEGILELVQEMQEFGFRPNAVTLSSILPTFSCFSNLKGGKAIHAYAI 400

Query: 127 FNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGY 186
            N     N+    ++I  Y +   +  A  +F++ ++R+++ WT++IS Y   G+     
Sbjct: 401 RNGYA-HNIYVATSIIDAYAKLGFLRGAQWVFDQSKDRSLIVWTAIISAYSAHGDANAAL 459

Query: 187 CLFRRM----PRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMI 242
            LF  M     + + V++TA++   A +G   E+  +F EM      G    V+    M+
Sbjct: 460 RLFGDMLSNGTQPDPVTFTAVLAACAHSGMVNEAWKIFDEM--FLKYGFQPCVEHYACMV 517

Query: 243 NGYIRFGRLEEAQNLFDTVPVRDEIS-WTSMIDGYLSVGQVSNAYYL---FHNMPDRDAV 298
               R G L EA      +P+      W ++++G    G V    ++     NM   +  
Sbjct: 518 GVLSRAGMLSEAAEFICKMPIEPNAKVWGALLNGVSVSGDVELGKFVCDHLFNMEPENTG 577

Query: 299 AWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNAT 334
            +  M +   Q   + EA  +  +M+  G+  +  T
Sbjct: 578 NYVIMANLYSQAGRWEEAENIREKMKKIGLKKIPGT 613



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 66/287 (22%), Positives = 136/287 (47%), Gaps = 25/287 (8%)

Query: 39  QRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEE 98
           + +V ++N+++  + + G L  AR LF EM  ++ V++ +++ G    G V +A  LF E
Sbjct: 273 EMDVSAHNSLIGLYAKCGSLDYARELFNEMSNKDEVTYGSIVSGYMTHGFVDKAMDLFRE 332

Query: 99  MPERNVVSWNSMVVGLIRNG------ELNEARKVFNSMPIKNVISWNAMIAGYVECCMM- 151
           M    + +WN+++ GL++N       EL +  + F   P  N ++ ++++  +   C   
Sbjct: 333 MKNPRLSTWNAVISGLVQNNCNEGILELVQEMQEFGFRP--NAVTLSSILPTF--SCFSN 388

Query: 152 ---GEAIVLF--EEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGG 206
              G+AI  +        N+   TS+I  Y + G +     +F +   ++++ WTA+I  
Sbjct: 389 LKGGKAIHAYAIRNGYAHNIYVATSIIDAYAKLGFLRGAQWVFDQSKDRSLIVWTAIISA 448

Query: 207 FAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDE 266
           ++ +G    +L LF +M     NG   +  +  +++      G + EA  +FD + ++  
Sbjct: 449 YSAHGDANAALRLFGDM---LSNGTQPDPVTFTAVLAACAHSGMVNEAWKIFDEMFLKYG 505

Query: 267 IS-----WTSMIDGYLSVGQVSNAYYLFHNMP-DRDAVAWTAMISGL 307
                  +  M+      G +S A      MP + +A  W A+++G+
Sbjct: 506 FQPCVEHYACMVGVLSRAGMLSEAAEFICKMPIEPNAKVWGALLNGV 552



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 65/215 (30%), Positives = 106/215 (49%), Gaps = 26/215 (12%)

Query: 15  TSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEM----PE 70
           TS I  Y+K GF+  A+ +F     R+++ + A++S +  +G  + A RLF +M     +
Sbjct: 412 TSIIDAYAKLGFLRGAQWVFDQSKDRSLIVWTAIISAYSAHGDANAALRLFGDMLSNGTQ 471

Query: 71  RNVVSWTAMICGLADAGRVCEARKLFEEMPERN-----VVSWNSMVVGLIRNGELNEARK 125
            + V++TA++   A +G V EA K+F+EM  +      V  +  MV  L R G L+EA +
Sbjct: 472 PDPVTFTAVLAACAHSGMVNEAWKIFDEMFLKYGFQPCVEHYACMVGVLSRAGMLSEAAE 531

Query: 126 VFNSMPIK-NVISWNAM-----IAGYVECCMMGEAIV--LFEEMEERNVVTWTSMISGYC 177
               MPI+ N   W A+     ++G VE   +G+ +   LF  ME  N   +  M + Y 
Sbjct: 532 FICKMPIEPNAKVWGALLNGVSVSGDVE---LGKFVCDHLF-NMEPENTGNYVIMANLYS 587

Query: 178 RAGEVEEGYCLFRRMPRKNV-----VSWTAMIGGF 207
           +AG  EE   +  +M +  +      SW    GG 
Sbjct: 588 QAGRWEEAENIREKMKKIGLKKIPGTSWIETSGGL 622


>gi|356502400|ref|XP_003520007.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31430-like [Glycine max]
          Length = 591

 Score =  292 bits (748), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 190/592 (32%), Positives = 300/592 (50%), Gaps = 27/592 (4%)

Query: 8   KSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEE 67
           K   + L  S    S+   I      F L   R++++     S     G  + A R+F  
Sbjct: 8   KGTYISLLKSCKSMSQLKQIQAHIFCFGLQQDRDILNKLMAFSMDSSLGDFNYANRIFNH 67

Query: 68  MPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNV----VSWNSMVVGLIRNGELNEA 123
           +   ++  +  MI      G +  A  LF+++ ER V     ++  ++ G+   GE+ E 
Sbjct: 68  IHHPSLFIYNLMIKAFVKRGSLRSAISLFQQLRERGVWPDNYTYPYVLKGIGCIGEVREG 127

Query: 124 RKVFNSMPIKNVISW-----NAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCR 178
            K+ ++  +K  + +     N+++  Y E  ++     +FEEM ER+ V+W  MISGY R
Sbjct: 128 EKI-HAFVVKTGLEFDPYVCNSLMDMYAELGLVEGFTQVFEEMPERDAVSWNIMISGYVR 186

Query: 179 AGEVEEGYCLFRRM-------PRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGN 231
               EE   ++RRM       P +  V  T        N      L L  E+     N  
Sbjct: 187 CKRFEEAVDVYRRMQMESNEKPNEATVVSTLSACAVLRN------LELGKEIHDYIANEL 240

Query: 232 NCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHN 291
           +      N++++ Y + G +  A+ +FD + V++   WTSM+ GY+  GQ+  A YLF  
Sbjct: 241 DLTPIMGNALLDMYCKCGCVSVAREIFDAMIVKNVNCWTSMVTGYVICGQLDQARYLFER 300

Query: 292 MPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLG 351
            P RD V WTAMI+G VQ   F +A  LF EM+  GV P       L         ++ G
Sbjct: 301 SPSRDVVLWTAMINGYVQFNHFEDAIALFGEMQIRGVEPDKFIVVTLLTGCAQLGALEQG 360

Query: 352 RQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHH 411
           + IH  + +   + D ++   LI MYAKCG I+ +  IF+ +   D  SW S++ G + +
Sbjct: 361 KWIHNYIDENRIKMDAVVSTALIEMYAKCGCIEKSLEIFNGLKDMDTTSWTSIICGLAMN 420

Query: 412 GLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEH 471
           G  +E L++FE+M   G  P+ +TF+ +LSAC HAGLV  G +LF++M  +Y I+P  EH
Sbjct: 421 GKTSEALELFEAMQTCGLKPDDITFVAVLSACGHAGLVEEGRKLFHSMSSIYHIEPNLEH 480

Query: 472 YVSMINLLGRAGKIKEAEEFVLRLPFEPDHRI---WGALLGACGFCEGNAEIAEHAAKRL 528
           Y   I+LLGRAG ++EAEE V +LP + +  I   +GALL AC    GN ++ E  A  L
Sbjct: 481 YGCFIDLLGRAGLLQEAEELVKKLPDQNNEIIVPLYGALLSACR-TYGNIDMGERLATAL 539

Query: 529 LELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNG 580
            ++   ++  H +L +IYA++ R  +  K+R  M   G++KVPG S +  +G
Sbjct: 540 AKVKSSDSSLHTLLASIYASADRWEDVRKVRSKMKDLGIKKVPGYSAIEVDG 591



 Score = 58.9 bits (141), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 41/141 (29%), Positives = 69/141 (48%), Gaps = 9/141 (6%)

Query: 3   ERNHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEAR 62
           + N  K   V  T+ I  Y+K G I+++  +F  +   +  S+ +++ G   NG+ SEA 
Sbjct: 368 DENRIKMDAVVSTALIEMYAKCGCIEKSLEIFNGLKDMDTTSWTSIICGLAMNGKTSEAL 427

Query: 63  RLFEEMP----ERNVVSWTAMICGLADAGRVCEARKLFEEMP-----ERNVVSWNSMVVG 113
            LFE M     + + +++ A++     AG V E RKLF  M      E N+  +   +  
Sbjct: 428 ELFEAMQTCGLKPDDITFVAVLSACGHAGLVEEGRKLFHSMSSIYHIEPNLEHYGCFIDL 487

Query: 114 LIRNGELNEARKVFNSMPIKN 134
           L R G L EA ++   +P +N
Sbjct: 488 LGRAGLLQEAEELVKKLPDQN 508


>gi|297815974|ref|XP_002875870.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297321708|gb|EFH52129.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 700

 Score =  292 bits (748), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 192/629 (30%), Positives = 308/629 (48%), Gaps = 88/629 (13%)

Query: 46  NAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEM------ 99
           N+ L   +  G L  AR++F++MP R++VSWTA+I G   A    EA  LF  M      
Sbjct: 38  NSHLRSLINAGNLRVARQVFDKMPHRDIVSWTAIIKGYVTANNSDEAMILFSAMRVVDPA 97

Query: 100 --PERNVVS---------------------------WNSMVVG------LIRNGELNEAR 124
             P+ +VVS                            +S+ VG        R G++ ++ 
Sbjct: 98  VSPDTSVVSVVLKACGQSSNIAYGESLHAYAVKTSLLSSVFVGSSLLDMYKRVGKIEKSC 157

Query: 125 KVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLF-------------------------- 158
           +VF+ MP +N ++W A+I G V      E +  F                          
Sbjct: 158 RVFSEMPFRNAVTWTAIITGLVHAGRYKEGLTYFSEMSSSEELSDTFTFAIALKACAGLR 217

Query: 159 -----EEMEERNVV------TWT--SMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIG 205
                +++    +V       W   S+ + Y   GE+ +G CLF  M  ++VVSWT++I 
Sbjct: 218 QVKYGKQIHTHVIVRGFDATVWVANSLATMYTECGEMRDGLCLFENMSERDVVSWTSLIV 277

Query: 206 GFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTV---P 262
            +   G  ++++  FI+M+   ++    N Q+  +M +      RL   + L   V    
Sbjct: 278 AYNRIGHEEKAVETFIKMR---NSQVPPNEQTFATMFSACASLSRLVWGEQLHCNVFSLG 334

Query: 263 VRDEISWT-SMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFM 321
           + D +S + SM+  Y + G++ +A  LF  M  RD ++W+ +I G  Q     EA   F 
Sbjct: 335 LNDSLSVSNSMMKMYSTCGKLDSASVLFQGMRCRDIISWSTIIGGYSQAGFGEEAFKYFS 394

Query: 322 EMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCG 381
            MR  G  P +   + L   +G  A ++ GRQ+H +      E +  + + LI+MY+KCG
Sbjct: 395 WMRQSGPKPTDFALASLLSVSGNMAVLEGGRQVHALAFCFGLEQNSTVRSTLINMYSKCG 454

Query: 382 VIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILS 441
            I  A  IF      D+VS  +M+ G++ HG + E + +FE  L+ G  P+SVTF+ +L+
Sbjct: 455 NIKEASKIFEETDRDDIVSLTAMINGYAEHGKSKEAIDLFEKSLKVGFSPDSVTFISVLT 514

Query: 442 ACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDH 501
           AC+H+G +  G+  FN M + Y ++P  EHY  M++LL RAG++ EAE+ +  + ++ D 
Sbjct: 515 ACTHSGQLDLGFHYFNLMQEKYNMRPAKEHYGCMVDLLCRAGRLSEAEKMIDEMSWKKDD 574

Query: 502 RIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMD 561
            +W  LL AC   +G+ E    AA+R+LELDP  A A V L NIY+++G   E   +R +
Sbjct: 575 VVWTTLLIACK-AKGDIERGRRAAERILELDPTCATALVTLANIYSSTGNLEEAANVRKN 633

Query: 562 MGLKGVRKVPGCSWLMRNGGIQMFLSGDK 590
           M  KGV K PG S +     +  F+SGD+
Sbjct: 634 MKAKGVIKEPGWSSIKIKDCVSAFVSGDR 662



 Score =  176 bits (446), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 129/469 (27%), Positives = 218/469 (46%), Gaps = 65/469 (13%)

Query: 79  MICGLADAG---RVCEAR-KLFEEMPERN--VVSW--NSMVVGLIRNGELNEARKVFNSM 130
           MI  + + G   R C A   L E+  E+   VV++  NS +  LI  G L  AR+VF+ M
Sbjct: 1   MILSVRNGGTIQRFCTASISLLEKPVEKTIQVVTFDTNSHLRSLINAGNLRVARQVFDKM 60

Query: 131 PIKNVISWNAMIAGYVECCMMGEAIVLFEEME--------ERNVVT-------------- 168
           P ++++SW A+I GYV      EA++LF  M         + +VV+              
Sbjct: 61  PHRDIVSWTAIIKGYVTANNSDEAMILFSAMRVVDPAVSPDTSVVSVVLKACGQSSNIAY 120

Query: 169 -------------------WTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAW 209
                               +S++  Y R G++E+   +F  MP +N V+WTA+I G   
Sbjct: 121 GESLHAYAVKTSLLSSVFVGSSLLDMYKRVGKIEKSCRVFSEMPFRNAVTWTAIITGLVH 180

Query: 210 NGFHKESLLLFIEMKGICDNGNNCN----VQSCNSMINGYIRFGRLEEAQNLFDTVPVR- 264
            G +KE L  F EM    +  +       +++C  +    +++G+      +   V VR 
Sbjct: 181 AGRYKEGLTYFSEMSSSEELSDTFTFAIALKACAGLRQ--VKYGK-----QIHTHVIVRG 233

Query: 265 -DEISWT--SMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFM 321
            D   W   S+   Y   G++ +   LF NM +RD V+WT++I    +     +A   F+
Sbjct: 234 FDATVWVANSLATMYTECGEMRDGLCLFENMSERDVVSWTSLIVAYNRIGHEEKAVETFI 293

Query: 322 EMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCG 381
           +MR   VPP   TF+ +F A  + + +  G Q+HC +        L + N ++ MY+ CG
Sbjct: 294 KMRNSQVPPNEQTFATMFSACASLSRLVWGEQLHCNVFSLGLNDSLSVSNSMMKMYSTCG 353

Query: 382 VIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILS 441
            +D+A  +F  M  RD++SW++++ G+S  G   E  K F  M +SG  P       +LS
Sbjct: 354 KLDSASVLFQGMRCRDIISWSTIIGGYSQAGFGEEAFKYFSWMRQSGPKPTDFALASLLS 413

Query: 442 ACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEE 490
              +  ++  G ++    F  + ++       ++IN+  + G IKEA +
Sbjct: 414 VSGNMAVLEGGRQVHALAF-CFGLEQNSTVRSTLINMYSKCGNIKEASK 461


>gi|225460265|ref|XP_002278647.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14050,
           mitochondrial-like [Vitis vinifera]
          Length = 610

 Score =  292 bits (748), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 163/463 (35%), Positives = 263/463 (56%), Gaps = 22/463 (4%)

Query: 139 NAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKN-- 196
           N +I  Y +C ++ +A+ LF ++  R+ ++W S+++   +A        +F  M +++  
Sbjct: 42  NNLINMYGKCGLIQDALNLFNQLPHRDPISWASILTANNQANLPHLTLSMFPAMFKQDGL 101

Query: 197 ---------VVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIR 247
                    +V   A++G        K+    FI    +    ++  V+S  S+++ Y +
Sbjct: 102 QPDHYVFACLVKACAILGAMKQG---KQVHATFI----VSPVSDDDVVKS--SLVDMYAK 152

Query: 248 FGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGL 307
            G  +  + +FD++  ++ ISWT+MI GY   G+  +A  LF  MP ++ ++WTA+ISGL
Sbjct: 153 CGLPDIGRVVFDSISSKNSISWTAMISGYAQSGRKLDAIQLFQKMPVKNLLSWTALISGL 212

Query: 308 VQNELFVEATYLFMEMRAHGVPPLNA-TFSVLFGAAGATANIDLGRQIHCVLMKTESESD 366
           VQ+  +V++ YLFMEMR+ G+  ++    S + GA+   A + LG+QIHC+++    ES 
Sbjct: 213 VQSGNWVDSFYLFMEMRSKGIDIVDPFILSSIIGASANLAVLGLGKQIHCLVILLGYESS 272

Query: 367 LILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLE 426
           L + N L+ MYAKC  +  A  IF  MV RD+VSW S+++G + HGLA E L ++  ML 
Sbjct: 273 LFVSNALVDMYAKCSDVLAAKKIFGRMVQRDIVSWTSIIVGTAQHGLAEEALSLYNRMLS 332

Query: 427 SGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIK 486
           +G  PN VTF+G++ ACSH GLVS+G   FN+M   Y I P  +HY  +++LL R+G ++
Sbjct: 333 TGLKPNEVTFVGLIYACSHVGLVSKGRYFFNSMIKDYGINPSLQHYTCLLDLLSRSGHLE 392

Query: 487 EAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIY 546
           EAE  +  +PF+PD   W ALL AC     N  I    A  LL L P +   +++L NIY
Sbjct: 393 EAENLIKAMPFKPDEATWAALLSACNH-HRNTLIGIRVADHLLSLKPEDPSTYILLSNIY 451

Query: 547 AASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGD 589
           A++       K+R  M    V+K PG S ++     Q+FL+G+
Sbjct: 452 ASAAMWESVSKVRRLMAAMEVKKEPGYSCIVLGKESQVFLAGE 494



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 81/275 (29%), Positives = 143/275 (52%), Gaps = 16/275 (5%)

Query: 15  TSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVV 74
           +S +  Y+K G  D  + +F  +  +N +S+ AM+SG+ Q+GR  +A +LF++MP +N++
Sbjct: 144 SSLVDMYAKCGLPDIGRVVFDSISSKNSISWTAMISGYAQSGRKLDAIQLFQKMPVKNLL 203

Query: 75  SWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEAR----KVFNSM 130
           SWTA+I GL  +G   ++  LF EM  + +   +  ++  I     N A     K  + +
Sbjct: 204 SWTALISGLVQSGNWVDSFYLFMEMRSKGIDIVDPFILSSIIGASANLAVLGLGKQIHCL 263

Query: 131 PI-----KNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEG 185
            I      ++   NA++  Y +C  +  A  +F  M +R++V+WTS+I G  + G  EE 
Sbjct: 264 VILLGYESSLFVSNALVDMYAKCSDVLAAKKIFGRMVQRDIVSWTSIIVGTAQHGLAEEA 323

Query: 186 YCLFRRM----PRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSM 241
             L+ RM     + N V++  +I   +  G   +    F  M  I D G N ++Q    +
Sbjct: 324 LSLYNRMLSTGLKPNEVTFVGLIYACSHVGLVSKGRYFFNSM--IKDYGINPSLQHYTCL 381

Query: 242 INGYIRFGRLEEAQNLFDTVPVR-DEISWTSMIDG 275
           ++   R G LEEA+NL   +P + DE +W +++  
Sbjct: 382 LDLLSRSGHLEEAENLIKAMPFKPDEATWAALLSA 416



 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 95/384 (24%), Positives = 182/384 (47%), Gaps = 23/384 (5%)

Query: 46  NAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVV 105
           N +++ + + G + +A  LF ++P R+ +SW +++     A        +F  M +++ +
Sbjct: 42  NNLINMYGKCGLIQDALNLFNQLPHRDPISWASILTANNQANLPHLTLSMFPAMFKQDGL 101

Query: 106 SWNSMV----------VGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAI 155
             +  V          +G ++ G+   A  + + +   +V+  ++++  Y +C +     
Sbjct: 102 QPDHYVFACLVKACAILGAMKQGKQVHATFIVSPVSDDDVVK-SSLVDMYAKCGLPDIGR 160

Query: 156 VLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKE 215
           V+F+ +  +N ++WT+MISGY ++G   +   LF++MP KN++SWTA+I G   +G   +
Sbjct: 161 VVFDSISSKNSISWTAMISGYAQSGRKLDAIQLFQKMPVKNLLSWTALISGLVQSGNWVD 220

Query: 216 SLLLFIEM--KGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEIS----W 269
           S  LF+EM  KGI    +  +    +S+I        L   + +   V +    S     
Sbjct: 221 SFYLFMEMRSKGI----DIVDPFILSSIIGASANLAVLGLGKQIHCLVILLGYESSLFVS 276

Query: 270 TSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVP 329
            +++D Y     V  A  +F  M  RD V+WT++I G  Q+ L  EA  L+  M + G+ 
Sbjct: 277 NALVDMYAKCSDVLAAKKIFGRMVQRDIVSWTSIIVGTAQHGLAEEALSLYNRMLSTGLK 336

Query: 330 PLNATFSVLFGAAGATANIDLGRQIHCVLMKTES-ESDLILENCLISMYAKCGVIDNAYN 388
           P   TF  L  A      +  GR     ++K       L    CL+ + ++ G ++ A N
Sbjct: 337 PNEVTFVGLIYACSHVGLVSKGRYFFNSMIKDYGINPSLQHYTCLLDLLSRSGHLEEAEN 396

Query: 389 IFSNMVSR-DLVSWNSMVMGFSHH 411
           +   M  + D  +W +++   +HH
Sbjct: 397 LIKAMPFKPDEATWAALLSACNHH 420



 Score = 76.3 bits (186), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 58/223 (26%), Positives = 111/223 (49%), Gaps = 9/223 (4%)

Query: 350 LGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFS 409
           +G+++HC ++KT  +    L N LI+MY KCG+I +A N+F+ +  RD +SW S++   +
Sbjct: 21  IGKKLHCHIIKTGIDQCKSLSNNLINMYGKCGLIQDALNLFNQLPHRDPISWASILTANN 80

Query: 410 HHGLANETLKVFESML-ESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPG 468
              L + TL +F +M  + G  P+   F  ++ AC+  G + +G ++ +A F V  +   
Sbjct: 81  QANLPHLTLSMFPAMFKQDGLQPDHYVFACLVKACAILGAMKQGKQV-HATFIVSPVSDD 139

Query: 469 PEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRL 528
                S++++  + G + +    V       +   W A++   G+ +   ++    A +L
Sbjct: 140 DVVKSSLVDMYAKCG-LPDIGRVVFDSISSKNSISWTAMIS--GYAQSGRKL---DAIQL 193

Query: 529 LELDPL-NAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKV 570
            +  P+ N  +   L +    SG  V+   L M+M  KG+  V
Sbjct: 194 FQKMPVKNLLSWTALISGLVQSGNWVDSFYLFMEMRSKGIDIV 236


>gi|255539110|ref|XP_002510620.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223551321|gb|EEF52807.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 708

 Score =  292 bits (748), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 191/641 (29%), Positives = 316/641 (49%), Gaps = 52/641 (8%)

Query: 9   SLVVHLTSS-ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRL--SEARRLF 65
           S  ++L +S I  Y+K   + +AK +F  +  ++V+S+N +++G+ Q G    S    LF
Sbjct: 40  SSCIYLANSLINFYAKCCHLPKAKLVFDRIHNKDVISWNCLINGYSQQGPTGSSFVMELF 99

Query: 66  EEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPE--------RNVVSWNSMVVGLIRN 117
           + M   N++       G+  A     +    ++            +V   +S++    + 
Sbjct: 100 QRMRADNILPNAHTFSGIFTAASNLSSIFFGQQAHAVAIKMACFYDVFVGSSLLNMYCKA 159

Query: 118 GELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFE----EMEERNVVTWTSMI 173
           G L EAR+VF+ MP +N ++W  MI+GY    + GEA  +FE    E E+ N   +TS++
Sbjct: 160 GLLFEAREVFDRMPERNEVTWATMISGYAIQRLAGEAFEVFELMRREEEDVNEFAFTSVL 219

Query: 174 SG-----------------------------------YCRAGEVEEGYCLFRRMPRKNVV 198
           S                                    Y + G +++   +F     KN +
Sbjct: 220 SALAVPEFVDSGKQIHCLAVKTGLLVFLSILNALVTMYAKCGSLDDSLQVFEMSNDKNSI 279

Query: 199 SWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLF 258
           +W+AMI G+A +G   ++L LF  M     N +   +    +  +        ++  N  
Sbjct: 280 TWSAMITGYAQSGDSHKALKLFSRMHFAGINPSEFTLVGVLNACSDACAVEEGKQVHNYL 339

Query: 259 DTVPVRDEIS-WTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEAT 317
             +    ++   T+++D Y   G   +A   F+ +   D V WT+MI+G VQN    +A 
Sbjct: 340 LKLGFESQLYIMTALVDMYAKSGVTEDARKGFNYLQQPDLVLWTSMIAGYVQNGENEDAL 399

Query: 318 YLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMY 377
            L+  M+  G+ P   T + +  A    A  D GRQIH   +K     ++ + + L +MY
Sbjct: 400 SLYCRMQMEGILPNELTMASVLKACSNLAAFDQGRQIHARTIKYGLGLEVTIGSALSTMY 459

Query: 378 AKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFL 437
           AKCG ++    +F  M  RD++SWN+M+ G S +G   E L++FE M +  T P+ VTF+
Sbjct: 460 AKCGNLEEGNIVFRRMPERDIISWNAMISGLSQNGYGKEALELFEEMRQQDTKPDDVTFV 519

Query: 438 GILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPF 497
            +LSACSH GLV  GW  F  MFD + + P  EHY  M+++L RAGK+ EA+EF+     
Sbjct: 520 NVLSACSHMGLVDSGWLYFRMMFDEFGLLPKVEHYACMVDVLSRAGKLYEAKEFIESTTI 579

Query: 498 EPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHK 557
           +    +W  LLGAC     N E+  +A ++L+EL    + A+V+L  IY A GR  +  +
Sbjct: 580 DHGLCLWRILLGACRNYR-NYELGAYAGEKLMELGSQESSAYVLLSGIYTALGRPEDVER 638

Query: 558 LRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
           +R  M ++GV K PGCSW+     + +F+ GD++   + EI
Sbjct: 639 VRSMMKVRGVSKEPGCSWIELKSNVHVFVVGDQMHPCIGEI 679



 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 120/521 (23%), Positives = 216/521 (41%), Gaps = 84/521 (16%)

Query: 36  LMPQRNVVSYNAMLS----GFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCE 91
           L PQ N+ S+N+++       LQ GR   A+ +        +    ++I   A    + +
Sbjct: 3   LHPQ-NLSSFNSLVQFTHQKSLQKGRALHAQIIKLASSSSCIYLANSLINFYAKCCHLPK 61

Query: 92  ARKLFEEMPERNVVSWNSMVVGLIRNG--------ELNEARKVFNSMPIKNVISWNAMIA 143
           A+ +F+ +  ++V+SWN ++ G  + G        EL +  +  N +P  +  S     A
Sbjct: 62  AKLVFDRIHNKDVISWNCLINGYSQQGPTGSSFVMELFQRMRADNILPNAHTFSGIFTAA 121

Query: 144 GYVECCMMGEAI--VLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWT 201
             +     G+    V  +     +V   +S+++ YC+AG + E   +F RMP +N V+W 
Sbjct: 122 SNLSSIFFGQQAHAVAIKMACFYDVFVGSSLLNMYCKAGLLFEAREVFDRMPERNEVTWA 181

Query: 202 AMIGGFAW---------------------NGFHKESLLLFIEMKGICDNGNNCNVQSC-- 238
            MI G+A                      N F   S+L  + +    D+G   +  +   
Sbjct: 182 TMISGYAIQRLAGEAFEVFELMRREEEDVNEFAFTSVLSALAVPEFVDSGKQIHCLAVKT 241

Query: 239 ---------NSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLF 289
                    N+++  Y + G L+++  +F+    ++ I+W++MI GY   G         
Sbjct: 242 GLLVFLSILNALVTMYAKCGSLDDSLQVFEMSNDKNSITWSAMITGYAQSGDSH------ 295

Query: 290 HNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANID 349
                                    +A  LF  M   G+ P   T   +  A      ++
Sbjct: 296 -------------------------KALKLFSRMHFAGINPSEFTLVGVLNACSDACAVE 330

Query: 350 LGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFS 409
            G+Q+H  L+K   ES L +   L+ MYAK GV ++A   F+ +   DLV W SM+ G+ 
Sbjct: 331 EGKQVHNYLLKLGFESQLYIMTALVDMYAKSGVTEDARKGFNYLQQPDLVLWTSMIAGYV 390

Query: 410 HHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGP 469
            +G   + L ++  M   G  PN +T   +L ACS+     +G ++        K   G 
Sbjct: 391 QNGENEDALSLYCRMQMEGILPNELTMASVLKACSNLAAFDQGRQIHARTI---KYGLGL 447

Query: 470 EHYV--SMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALL 508
           E  +  ++  +  + G ++E      R+P E D   W A++
Sbjct: 448 EVTIGSALSTMYAKCGNLEEGNIVFRRMP-ERDIISWNAMI 487


>gi|15228265|ref|NP_190368.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207726|sp|Q9STS9.1|PP268_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g47840
 gi|4741201|emb|CAB41867.1| putative protein [Arabidopsis thaliana]
 gi|332644818|gb|AEE78339.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 706

 Score =  292 bits (748), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 193/637 (30%), Positives = 308/637 (48%), Gaps = 88/637 (13%)

Query: 46  NAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEM------ 99
           N+ L   +  G L  AR++F++MP  ++VSWT++I     A    EA  LF  M      
Sbjct: 44  NSHLRSLINAGNLRAARQVFDKMPHGDIVSWTSIIKRYVTANNSDEALILFSAMRVVDHA 103

Query: 100 --PERNVVS---------------------------WNSMVVG------LIRNGELNEAR 124
             P+ +V+S                            +S+ VG        R G+++++ 
Sbjct: 104 VSPDTSVLSVVLKACGQSSNIAYGESLHAYAVKTSLLSSVYVGSSLLDMYKRVGKIDKSC 163

Query: 125 KVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEE--------------------- 163
           +VF+ MP +N ++W A+I G V      E +  F EM                       
Sbjct: 164 RVFSEMPFRNAVTWTAIITGLVHAGRYKEGLTYFSEMSRSEELSDTYTFAIALKACAGLR 223

Query: 164 --------------RNVVTW----TSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIG 205
                         R  VT      S+ + Y   GE+++G CLF  M  ++VVSWT++I 
Sbjct: 224 QVKYGKAIHTHVIVRGFVTTLCVANSLATMYTECGEMQDGLCLFENMSERDVVSWTSLIV 283

Query: 206 GFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTV---P 262
            +   G   +++  FI+M+   ++    N Q+  SM +      RL   + L   V    
Sbjct: 284 AYKRIGQEVKAVETFIKMR---NSQVPPNEQTFASMFSACASLSRLVWGEQLHCNVLSLG 340

Query: 263 VRDEISWT-SMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFM 321
           + D +S + SM+  Y + G + +A  LF  M  RD ++W+ +I G  Q     E    F 
Sbjct: 341 LNDSLSVSNSMMKMYSTCGNLVSASVLFQGMRCRDIISWSTIIGGYCQAGFGEEGFKYFS 400

Query: 322 EMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCG 381
            MR  G  P +   + L   +G  A I+ GRQ+H + +    E +  + + LI+MY+KCG
Sbjct: 401 WMRQSGTKPTDFALASLLSVSGNMAVIEGGRQVHALALCFGLEQNSTVRSSLINMYSKCG 460

Query: 382 VIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILS 441
            I  A  IF      D+VS  +M+ G++ HG + E + +FE  L+ G  P+SVTF+ +L+
Sbjct: 461 SIKEASMIFGETDRDDIVSLTAMINGYAEHGKSKEAIDLFEKSLKVGFRPDSVTFISVLT 520

Query: 442 ACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDH 501
           AC+H+G +  G+  FN M + Y ++P  EHY  M++LL RAG++ +AE+ +  + ++ D 
Sbjct: 521 ACTHSGQLDLGFHYFNMMQETYNMRPAKEHYGCMVDLLCRAGRLSDAEKMINEMSWKKDD 580

Query: 502 RIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMD 561
            +W  LL AC   +G+ E    AA+R+LELDP  A A V L NIY+++G   E   +R +
Sbjct: 581 VVWTTLLIACK-AKGDIERGRRAAERILELDPTCATALVTLANIYSSTGNLEEAANVRKN 639

Query: 562 MGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
           M  KGV K PG S +     +  F+SGD+   Q  +I
Sbjct: 640 MKAKGVIKEPGWSSIKIKDCVSAFVSGDRFHPQSEDI 676


>gi|449440387|ref|XP_004137966.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53360,
           mitochondrial-like [Cucumis sativus]
          Length = 792

 Score =  292 bits (747), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 185/638 (28%), Positives = 323/638 (50%), Gaps = 65/638 (10%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEM------PER 71
           ++ Y K G + EA+ +F  MP +NVVS+ +M+SG+ + G    A  L+ +M      P+ 
Sbjct: 140 LSMYGKCGSLKEARNMFDSMPLKNVVSWTSMISGYSRYGEEDNAITLYVQMLRSGHIPDH 199

Query: 72  NVVSWTAMICGLADAGRVCEARKLFEEMPER----NVVSWNSMVVGLIRNGELNEARKVF 127
                    C   D  ++  AR+L   + +     ++++ N+++    +  ++ +A  VF
Sbjct: 200 FTFGSIVKSCSGLDDFKL--ARQLHAHVLKSEFGADLIAQNALISMYTKFSQMADAINVF 257

Query: 128 NSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISG------------ 175
           + + IK++ISW +MIAG+ +     EA+  F EM  ++V      + G            
Sbjct: 258 SRIIIKDLISWGSMIAGFSQLGYELEALCHFREMLSQSVYQPNEFVFGSAFSACSKLLEP 317

Query: 176 ----------------------------YCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGF 207
                                       Y + G +E    +F  + + ++V+W A+I GF
Sbjct: 318 DCGRQIHGLCIKFGLGSDLFAGCSLCDMYAKCGFLESARTVFYHIEKPDLVAWNAIIAGF 377

Query: 208 AWNGFHKESLLLFIEMKGICDNGNNCNVQS----CNS--MINGYIRFGRLEEAQNLFDTV 261
           A     KES   F +M+      N+  V S    C+   M+N  I+             +
Sbjct: 378 ASVSNAKESSSFFSQMRHTGLVPNDVTVLSLLCACSEPVMLNHGIQVHSYIVKMGFNLDI 437

Query: 262 PVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDR-DAVAWTAMISGLVQNELFVEATYLF 320
           PV       S++  Y     +++A  +F ++ ++ D V+W  +++  +Q     E   L 
Sbjct: 438 PV-----CNSLLSMYSKCSNLNDALQVFEDIGNKADIVSWNTLLTACLQQNQAGEVLRLT 492

Query: 321 MEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKC 380
             M A  + P + T + +  ++G  A+ ++G QIHC +MK+    D+ + N LI+MY KC
Sbjct: 493 KLMFASRIKPDHVTLTNVLVSSGQIASYEVGSQIHCFIMKSGLNLDISVSNALINMYTKC 552

Query: 381 GVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGIL 440
           G ++ A  +F ++ + D++SW+S+++G++  G   E  ++F +M   G  PN +TF+GIL
Sbjct: 553 GSLECARKMFDSIGNPDIISWSSLIVGYAQAGCGKEAFELFRTMRGLGVKPNEITFVGIL 612

Query: 441 SACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPD 500
           +ACSH G+V  G +L+  M + Y+I P  EH   M++LL RAG +  AE+F+ ++PF PD
Sbjct: 613 TACSHIGMVEEGLKLYRTMQEDYRISPTKEHCSCMVDLLARAGCLDVAEDFIKQMPFVPD 672

Query: 501 HRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRM 560
             +W  LL AC    GN E+ + AA+ +L++DP N+ A V+LCNI+A+SG   +  +LR 
Sbjct: 673 VVVWKTLLAACKV-HGNLEVGKRAAENVLKIDPSNSAAVVMLCNIHASSGHWKDFARLRS 731

Query: 561 DMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
            M    V KVPG SW+     + +FL+ D +  +  +I
Sbjct: 732 SMRRMDVGKVPGQSWIEIKDKVHVFLAEDNLHPERGKI 769



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 122/447 (27%), Positives = 202/447 (45%), Gaps = 59/447 (13%)

Query: 120 LNEARKVFNSMPIKN----VISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISG 175
           L   RK+   M   N    +I  N +++ Y +C  + EA  +F+ M  +NVV+WTSMISG
Sbjct: 114 LEHGRKIHRHMLTCNYQPDMILQNHILSMYGKCGSLKEARNMFDSMPLKNVVSWTSMISG 173

Query: 176 YCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKG-ICDNGNNCN 234
           Y R GE +    L+ +M R   +      G    +    +   L  ++   +  +    +
Sbjct: 174 YSRYGEEDNAITLYVQMLRSGHIPDHFTFGSIVKSCSGLDDFKLARQLHAHVLKSEFGAD 233

Query: 235 VQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPD 294
           + + N++I+ Y +F ++ +A N+F  + ++D ISW SMI G+  +G     Y L      
Sbjct: 234 LIAQNALISMYTKFSQMADAINVFSRIIIKDLISWGSMIAGFSQLG-----YEL------ 282

Query: 295 RDAVAWTAMISGLVQNELFVEATYLFMEMRAHGV-PPLNATFSVLFGAAGATANIDLGRQ 353
                               EA   F EM +  V  P    F   F A       D GRQ
Sbjct: 283 --------------------EALCHFREMLSQSVYQPNEFVFGSAFSACSKLLEPDCGRQ 322

Query: 354 IHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGL 413
           IH + +K    SDL     L  MYAKCG +++A  +F ++   DLV+WN+++ GF+    
Sbjct: 323 IHGLCIKFGLGSDLFAGCSLCDMYAKCGFLESARTVFYHIEKPDLVAWNAIIAGFASVSN 382

Query: 414 ANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYV 473
           A E+   F  M  +G  PN VT L +L ACS   +++ G ++ +     Y ++ G    +
Sbjct: 383 AKESSSFFSQMRHTGLVPNDVTVLSLLCACSEPVMLNHGIQVHS-----YIVKMGFNLDI 437

Query: 474 ----SMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLL 529
               S++++  +   + +A +    +  + D   W  LL AC        + ++ A  +L
Sbjct: 438 PVCNSLLSMYSKCSNLNDALQVFEDIGNKADIVSWNTLLTAC--------LQQNQAGEVL 489

Query: 530 ELDPLN-----APAHVVLCNIYAASGR 551
            L  L       P HV L N+  +SG+
Sbjct: 490 RLTKLMFASRIKPDHVTLTNVLVSSGQ 516



 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 107/425 (25%), Positives = 190/425 (44%), Gaps = 70/425 (16%)

Query: 74  VSWTAMICGLADAGRVCEARKLFEEM----PERNVVSWNSMVVGLIRNGELNEARKVFNS 129
           V++T +I   +    +   RK+   M     + +++  N ++    + G L EAR +F+S
Sbjct: 99  VTYTHLINACSSLRSLEHGRKIHRHMLTCNYQPDMILQNHILSMYGKCGSLKEARNMFDS 158

Query: 130 MPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEER------------------------- 164
           MP+KNV+SW +MI+GY        AI L+ +M                            
Sbjct: 159 MPLKNVVSWTSMISGYSRYGEEDNAITLYVQMLRSGHIPDHFTFGSIVKSCSGLDDFKLA 218

Query: 165 --------------NVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWN 210
                         +++   ++IS Y +  ++ +   +F R+  K+++SW +MI GF+  
Sbjct: 219 RQLHAHVLKSEFGADLIAQNALISMYTKFSQMADAINVFSRIIIKDLISWGSMIAGFSQL 278

Query: 211 GFHKESLLLFIEMKGICDNGNNCNV-------------QSCNSMINGY-IRFGRLEEAQN 256
           G+  E+L  F EM        N  V               C   I+G  I+FG      +
Sbjct: 279 GYELEALCHFREMLSQSVYQPNEFVFGSAFSACSKLLEPDCGRQIHGLCIKFGL---GSD 335

Query: 257 LFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEA 316
           LF         +  S+ D Y   G + +A  +F+++   D VAW A+I+G        E+
Sbjct: 336 LF---------AGCSLCDMYAKCGFLESARTVFYHIEKPDLVAWNAIIAGFASVSNAKES 386

Query: 317 TYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISM 376
           +  F +MR  G+ P + T   L  A      ++ G Q+H  ++K     D+ + N L+SM
Sbjct: 387 SSFFSQMRHTGLVPNDVTVLSLLCACSEPVMLNHGIQVHSYIVKMGFNLDIPVCNSLLSM 446

Query: 377 YAKCGVIDNAYNIFSNMVSR-DLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVT 435
           Y+KC  +++A  +F ++ ++ D+VSWN+++        A E L++ + M  S   P+ VT
Sbjct: 447 YSKCSNLNDALQVFEDIGNKADIVSWNTLLTACLQQNQAGEVLRLTKLMFASRIKPDHVT 506

Query: 436 FLGIL 440
              +L
Sbjct: 507 LTNVL 511



 Score = 88.6 bits (218), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 73/280 (26%), Positives = 132/280 (47%), Gaps = 16/280 (5%)

Query: 304 ISGLVQNELFVEATYLFMEMRAHGVPPLNA-TFSVLFGAAGATANIDLGRQIHCVLMKTE 362
           I  L +  L  EA   F   +     PL + T++ L  A  +  +++ GR+IH  ++   
Sbjct: 69  IISLCKKNLHREALKAFDIFQKCSSSPLKSVTYTHLINACSSLRSLEHGRKIHRHMLTCN 128

Query: 363 SESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFE 422
            + D+IL+N ++SMY KCG +  A N+F +M  +++VSW SM+ G+S +G  +  + ++ 
Sbjct: 129 YQPDMILQNHILSMYGKCGSLKEARNMFDSMPLKNVVSWTSMISGYSRYGEEDNAITLYV 188

Query: 423 SMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYV--SMINLLG 480
            ML SG  P+  TF  I+ +CS         +L      V K + G +     ++I++  
Sbjct: 189 QMLRSGHIPDHFTFGSIVKSCSGLDDFKLARQLHA---HVLKSEFGADLIAQNALISMYT 245

Query: 481 RAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHV 540
           +  ++ +A     R+  + D   WG+++   GF +   E+      R +    +  P   
Sbjct: 246 KFSQMADAINVFSRIIIK-DLISWGSMIA--GFSQLGYELEALCHFREMLSQSVYQPNEF 302

Query: 541 VLCNIYAASGRHVEE------HKLRMDMGLKGVRKVPGCS 574
           V  + ++A  + +E       H L +  GL G     GCS
Sbjct: 303 VFGSAFSACSKLLEPDCGRQIHGLCIKFGL-GSDLFAGCS 341


>gi|356515320|ref|XP_003526349.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 816

 Score =  292 bits (747), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 193/642 (30%), Positives = 313/642 (48%), Gaps = 69/642 (10%)

Query: 15  TSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMP----- 69
           T  I+ + K   I EA  +F+ +  +  V Y+ ML G+ +N  L +A R +E M      
Sbjct: 80  TKLISLFCKFNSITEAARVFEPVEHKLDVLYHTMLKGYAKNSTLRDAVRFYERMRCDEVM 139

Query: 70  ----------------------------------ERNVVSWTAMICGLADAGRVCEARKL 95
                                             + N+ + TA++   A   ++ +A K+
Sbjct: 140 PVVYDFTYLLQLSGENLDLRRGREIHGMVITNGFQSNLFAMTAVVNLYAKCRQIEDAYKM 199

Query: 96  FEEMPERNVVSWNSMVVGLIRNG----------ELNEARKVFNSMPIKNVISWNAMIAGY 145
           FE MP+R++VSWN++V G  +NG          ++ EA +  +S+ + +V+   A +   
Sbjct: 200 FERMPQRDLVSWNTVVAGYAQNGFARRAVQVVLQMQEAGQKPDSITLVSVLPAVADL--- 256

Query: 146 VECCMMGEAI--VLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAM 203
            +   +G +I    F    E  V   T+M+  Y + G V     +F+ M  +NVVSW  M
Sbjct: 257 -KALRIGRSIHGYAFRAGFEYMVNVATAMLDTYFKCGSVRSARLVFKGMSSRNVVSWNTM 315

Query: 204 IGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQ---NLFDT 260
           I G+A NG  +E+   F++M    D G      S    ++     G LE  +    L D 
Sbjct: 316 IDGYAQNGESEEAFATFLKM---LDEGVEPTNVSMMGALHACANLGDLERGRYVHRLLDE 372

Query: 261 VPVRDEIS-WTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYL 319
             +  ++S   S+I  Y    +V  A  +F N+  +  V W AMI G  QN    EA  L
Sbjct: 373 KKIGFDVSVMNSLISMYSKCKRVDIAASVFGNLKHKTVVTWNAMILGYAQNGCVNEALNL 432

Query: 320 FMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQ---IHCVLMKTESESDLILENCLISM 376
           F EM++H + P + T   L     A A++ + RQ   IH + ++T  + ++ +   LI  
Sbjct: 433 FCEMQSHDIKPDSFT---LVSVITALADLSVTRQAKWIHGLAIRTLMDKNVFVCTALIDT 489

Query: 377 YAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTF 436
           +AKCG I  A  +F  M  R +++WN+M+ G+  +G   E L +F  M      PN +TF
Sbjct: 490 HAKCGAIQTARKLFDLMQERHVITWNAMIDGYGTNGHGREALDLFNEMQNGSVKPNEITF 549

Query: 437 LGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLP 496
           L +++ACSH+GLV  G   F +M + Y ++P  +HY +M++LLGRAG++ +A +F+  +P
Sbjct: 550 LSVIAACSHSGLVEEGMYYFESMKENYGLEPTMDHYGAMVDLLGRAGRLDDAWKFIQDMP 609

Query: 497 FEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEH 556
            +P   + GA+LGAC     N E+ E  A  L +LDP +   HV+L N+YA++    +  
Sbjct: 610 VKPGITVLGAMLGACRI-HKNVELGEKTADELFDLDPDDGGYHVLLANMYASASMWDKVA 668

Query: 557 KLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
           ++R  M  KG++K PGCS +     +  F SG     Q   I
Sbjct: 669 RVRTAMEKKGIQKTPGCSLVELRNEVHTFYSGSTNHPQSKRI 710



 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 108/420 (25%), Positives = 182/420 (43%), Gaps = 84/420 (20%)

Query: 14  LTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPE--- 70
           +T+ +  Y+K   I++A  +F+ MPQR++VS+N +++G+ QNG    A ++  +M E   
Sbjct: 180 MTAVVNLYAKCRQIEDAYKMFERMPQRDLVSWNTVVAGYAQNGFARRAVQVVLQMQEAGQ 239

Query: 71  -----------------------RNVVSW-------------TAMICGLADAGRVCEARK 94
                                  R++  +             TAM+      G V  AR 
Sbjct: 240 KPDSITLVSVLPAVADLKALRIGRSIHGYAFRAGFEYMVNVATAMLDTYFKCGSVRSARL 299

Query: 95  LFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCM---- 150
           +F+ M  RNVVSWN+M+ G  +NGE  EA   F  M  + V   N  + G +  C     
Sbjct: 300 VFKGMSSRNVVSWNTMIDGYAQNGESEEAFATFLKMLDEGVEPTNVSMMGALHACANLGD 359

Query: 151 MGEAIVLFEEMEER----NVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGG 206
           +     +   ++E+    +V    S+IS Y +   V+    +F  +  K VV+W AMI G
Sbjct: 360 LERGRYVHRLLDEKKIGFDVSVMNSLISMYSKCKRVDIAASVFGNLKHKTVVTWNAMILG 419

Query: 207 FAWNGFHKESLLLFIEMK----------------GICD----------------NGNNCN 234
           +A NG   E+L LF EM+                 + D                   + N
Sbjct: 420 YAQNGCVNEALNLFCEMQSHDIKPDSFTLVSVITALADLSVTRQAKWIHGLAIRTLMDKN 479

Query: 235 VQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPD 294
           V  C ++I+ + + G ++ A+ LFD +  R  I+W +MIDGY + G    A  LF+ M +
Sbjct: 480 VFVCTALIDTHAKCGAIQTARKLFDLMQERHVITWNAMIDGYGTNGHGREALDLFNEMQN 539

Query: 295 ----RDAVAWTAMISGLVQNELFVEATYLFMEMRA-HGVPPLNATFSVLFGAAGATANID 349
                + + + ++I+    + L  E  Y F  M+  +G+ P    +  +    G    +D
Sbjct: 540 GSVKPNEITFLSVIAACSHSGLVEEGMYYFESMKENYGLEPTMDHYGAMVDLLGRAGRLD 599



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 81/340 (23%), Positives = 148/340 (43%), Gaps = 44/340 (12%)

Query: 114 LIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMI 173
           +I+NG  NE   +F +  I     +N++           EA  +FE +E +  V + +M+
Sbjct: 67  IIKNGFYNE--HLFQTKLISLFCKFNSIT----------EAARVFEPVEHKLDVLYHTML 114

Query: 174 SGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKG-ICDNGNN 232
            GY +   + +    + RM    V+                  L    E+ G +  NG  
Sbjct: 115 KGYAKNSTLRDAVRFYERMRCDEVMPVVYDFTYLLQLSGENLDLRRGREIHGMVITNGFQ 174

Query: 233 CNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNM 292
            N+ +  +++N Y +  ++E+A  +F+ +P RD +SW +++ GY                
Sbjct: 175 SNLFAMTAVVNLYAKCRQIEDAYKMFERMPQRDLVSWNTVVAGY---------------- 218

Query: 293 PDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGR 352
                           QN     A  + ++M+  G  P + T   +  A      + +GR
Sbjct: 219 ---------------AQNGFARRAVQVVLQMQEAGQKPDSITLVSVLPAVADLKALRIGR 263

Query: 353 QIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHG 412
            IH    +   E  + +   ++  Y KCG + +A  +F  M SR++VSWN+M+ G++ +G
Sbjct: 264 SIHGYAFRAGFEYMVNVATAMLDTYFKCGSVRSARLVFKGMSSRNVVSWNTMIDGYAQNG 323

Query: 413 LANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRG 452
            + E    F  ML+ G  P +V+ +G L AC++ G + RG
Sbjct: 324 ESEEAFATFLKMLDEGVEPTNVSMMGALHACANLGDLERG 363



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 54/204 (26%), Positives = 88/204 (43%), Gaps = 39/204 (19%)

Query: 14  LTSSITKYSKRGFIDEAK-----ALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEM 68
           L S IT  +      +AK     A+  LM  +NV    A++    + G +  AR+LF+ M
Sbjct: 448 LVSVITALADLSVTRQAKWIHGLAIRTLM-DKNVFVCTALIDTHAKCGAIQTARKLFDLM 506

Query: 69  PERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFN 128
            ER+V++W AMI G    G   EA  LF EM                +NG +        
Sbjct: 507 QERHVITWNAMIDGYGTNGHGREALDLFNEM----------------QNGSVK------- 543

Query: 129 SMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEER-----NVVTWTSMISGYCRAGEVE 183
                N I++ ++IA      ++ E +  FE M+E       +  + +M+    RAG ++
Sbjct: 544 ----PNEITFLSVIAACSHSGLVEEGMYYFESMKENYGLEPTMDHYGAMVDLLGRAGRLD 599

Query: 184 EGYCLFRRMPRK-NVVSWTAMIGG 206
           + +   + MP K  +    AM+G 
Sbjct: 600 DAWKFIQDMPVKPGITVLGAMLGA 623


>gi|345505214|gb|AEN99831.1| chlororespiratory reduction 4 [Brassica rapa]
          Length = 612

 Score =  292 bits (747), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 167/482 (34%), Positives = 256/482 (53%), Gaps = 46/482 (9%)

Query: 111 VVGL-IRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEM--EERNVV 167
           ++GL I+ G L  AR+VF+ MP ++ +S+N+MI GY++C ++  A  LF  M  E+RN++
Sbjct: 169 LIGLYIKCGCLGFARQVFDRMPQRDSVSYNSMIDGYLKCGLVESAGELFGLMPREKRNLI 228

Query: 168 TWTSMISGYC-RAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGI 226
           TW SMI GY  RA  V     LF  MP K+++SW                          
Sbjct: 229 TWNSMIGGYAQRADGVNVAAKLFDEMPEKDLISW-------------------------- 262

Query: 227 CDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAY 286
                       NSMI GY++ GR+E+A+ LFD +P RD ++W  MIDGY  +G V  A 
Sbjct: 263 ------------NSMIGGYVKHGRIEDAKGLFDVMPRRDVVTWAIMIDGYGKLGLVHEAK 310

Query: 287 YLFHNMPDRDAVAWTAMISGLVQNELFVEATYLF--MEMRAHGVPPLNATFSVLFGAAGA 344
            LF  MP RD V + +M+SG VQN   +EA  +F  ME  +H + P   +  ++  A   
Sbjct: 311 TLFDQMPHRDVVVYNSMMSGXVQNRYHMEALEVFNHMEKESH-LTPDETSLVIVLSAXAQ 369

Query: 345 TANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSM 404
              +     +H  +++ +  S   L   LI MY+KCG I +A  +F  + S+ +  WN+M
Sbjct: 370 LGRLSKAIDMHLYIVEKQFPSSGKLGVALIDMYSKCGSIQHAMRVFEGIESKSIDHWNAM 429

Query: 405 VMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYK 464
           + G + HGL      +   +      P+ +TF+G+L+ACSH+GLV  G   F  M   +K
Sbjct: 430 IGGLAVHGLGESAFDMLLQIERRSIKPDHITFVGVLNACSHSGLVKEGLLCFELMRRKHK 489

Query: 465 IQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHA 524
           I+P  +HY  M+++L R+G I+ A+  +  +P EP+  IW   L AC       E  E  
Sbjct: 490 IEPRLQHYGCMVDILARSGSIELAKNLIEGMPIEPNDVIWRTFLTACSH-HKEFETGELV 548

Query: 525 AKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQM 584
           AK L+     N  ++V+L N+YA++G   +  ++R  M  K + K+PGCSW+  +G +  
Sbjct: 549 AKHLILQAGYNPSSYVLLSNMYASNGMWKDVRRVRTMMKEKNIEKIPGCSWIELDGRVHE 608

Query: 585 FL 586
           FL
Sbjct: 609 FL 610



 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 127/438 (28%), Positives = 226/438 (51%), Gaps = 22/438 (5%)

Query: 22  SKRGFIDEAKALFQLMPQRNVVS----YNAMLSGFLQNGRLSEARRLFEEMPERNVVSWT 77
           S+ GF+ E   +   + +    S     N ++  +++ G L  AR++F+ MP+R+ VS+ 
Sbjct: 139 SRLGFVKEGTQVHGFLIKTGTWSDLFLQNCLIGLYIKCGCLGFARQVFDRMPQRDSVSYN 198

Query: 78  AMICGLADAGRVCEARKLFEEMP--ERNVVSWNSMVVGLIRNGE-LNEARKVFNSMPIKN 134
           +MI G    G V  A +LF  MP  +RN+++WNSM+ G  +  + +N A K+F+ MP K+
Sbjct: 199 SMIDGYLKCGLVESAGELFGLMPREKRNLITWNSMIGGYAQRADGVNVAAKLFDEMPEKD 258

Query: 135 VISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPR 194
           +ISWN+MI GYV+   + +A  LF+ M  R+VVTW  MI GY + G V E   LF +MP 
Sbjct: 259 LISWNSMIGGYVKHGRIEDAKGLFDVMPRRDVVTWAIMIDGYGKLGLVHEAKTLFDQMPH 318

Query: 195 KNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEA 254
           ++VV + +M+ G   N +H E+L +F  M+   ++    +  S   +++   + GRL +A
Sbjct: 319 RDVVVYNSMMSGXVQNRYHMEALEVFNHMEK--ESHLTPDETSLVIVLSAXAQLGRLSKA 376

Query: 255 QNLF-----DTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQ 309
            ++         P   ++   ++ID Y   G + +A  +F  +  +    W AMI GL  
Sbjct: 377 IDMHLYIVEKQFPSSGKLG-VALIDMYSKCGSIQHAMRVFEGIESKSIDHWNAMIGGLAV 435

Query: 310 NELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCV-LMKTESESDLI 368
           + L   A  + +++    + P + TF  +  A   +  +  G  + C  LM+ + + +  
Sbjct: 436 HGLGESAFDMLLQIERRSIKPDHITFVGVLNACSHSGLVKEG--LLCFELMRRKHKIEPR 493

Query: 369 LEN--CLISMYAKCGVIDNAYNIFSNM-VSRDLVSWNSMVMGFSHHG-LANETLKVFESM 424
           L++  C++ + A+ G I+ A N+   M +  + V W + +   SHH       L     +
Sbjct: 494 LQHYGCMVDILARSGSIELAKNLIEGMPIEPNDVIWRTFLTACSHHKEFETGELVAKHLI 553

Query: 425 LESGTHPNSVTFLGILSA 442
           L++G +P+S   L  + A
Sbjct: 554 LQAGYNPSSYVLLSNMYA 571



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 81/304 (26%), Positives = 156/304 (51%), Gaps = 48/304 (15%)

Query: 16  SSITKYSKRGF-IDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVV 74
           S I  Y++R   ++ A  LF  MP+++++S+N+M+ G++++GR+ +A+ LF+ MP R+VV
Sbjct: 232 SMIGGYAQRADGVNVAAKLFDEMPEKDLISWNSMIGGYVKHGRIEDAKGLFDVMPRRDVV 291

Query: 75  SWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKN 134
           +W  MI G    G V EA+ LF++MP R+VV +NSM+ G ++N    EA +VFN M  ++
Sbjct: 292 TWAIMIDGYGKLGLVHEAKTLFDQMPHRDVVVYNSMMSGXVQNRYHMEALEVFNHMEKES 351

Query: 135 VISWN----------------------------------------AMIAGYVECCMMGEA 154
            ++ +                                        A+I  Y +C  +  A
Sbjct: 352 HLTPDETSLVIVLSAXAQLGRLSKAIDMHLYIVEKQFPSSGKLGVALIDMYSKCGSIQHA 411

Query: 155 IVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNV----VSWTAMIGGFAWN 210
           + +FE +E +++  W +MI G    G  E  + +  ++ R+++    +++  ++   + +
Sbjct: 412 MRVFEGIESKSIDHWNAMIGGLAVHGLGESAFDMLLQIERRSIKPDHITFVGVLNACSHS 471

Query: 211 GFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVR-DEISW 269
           G  KE LL F  M+    +     +Q    M++   R G +E A+NL + +P+  +++ W
Sbjct: 472 GLVKEGLLCFELMRR--KHKIEPRLQHYGCMVDILARSGSIELAKNLIEGMPIEPNDVIW 529

Query: 270 TSMI 273
            + +
Sbjct: 530 RTFL 533



 Score = 79.0 bits (193), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 63/218 (28%), Positives = 99/218 (45%), Gaps = 9/218 (4%)

Query: 296 DAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIH 355
           D   W  +I          +A +L   M  +GVP    +FS+   A      +  G Q+H
Sbjct: 92  DPFLWNVVIKSHSHGVDPRKALFLLCLMLENGVPVDKFSFSLALKACSRLGFVKEGTQVH 151

Query: 356 CVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLAN 415
             L+KT + SDL L+NCLI +Y KCG +  A  +F  M  RD VS+NSM+ G+   GL  
Sbjct: 152 GFLIKTGTWSDLFLQNCLIGLYIKCGCLGFARQVFDRMPQRDSVSYNSMIDGYLKCGLVE 211

Query: 416 ETLKVFESMLESGTHPNSVTFLGILSA-CSHAGLVSRGWELFNAMFDVYKIQPGPEHYVS 474
              ++F  M       N +T+  ++      A  V+   +LF+ M +   I      + S
Sbjct: 212 SAGELFGLMPREKR--NLITWNSMIGGYAQRADGVNVAAKLFDEMPEKDLIS-----WNS 264

Query: 475 MINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACG 512
           MI    + G+I++A+     +P   D   W  ++   G
Sbjct: 265 MIGGYVKHGRIEDAKGLFDVMP-RRDVVTWAIMIDGYG 301


>gi|449518693|ref|XP_004166371.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53360,
           mitochondrial-like [Cucumis sativus]
          Length = 792

 Score =  292 bits (747), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 185/638 (28%), Positives = 323/638 (50%), Gaps = 65/638 (10%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEM------PER 71
           ++ Y K G + EA+ +F  MP +NVVS+ +M+SG+ + G    A  L+ +M      P+ 
Sbjct: 140 LSMYGKCGSLKEARNMFDSMPLKNVVSWTSMISGYSRYGEEDNAITLYVQMLRSGHIPDH 199

Query: 72  NVVSWTAMICGLADAGRVCEARKLFEEMPER----NVVSWNSMVVGLIRNGELNEARKVF 127
                    C   D  ++  AR+L   + +     ++++ N+++    +  ++ +A  VF
Sbjct: 200 FTFGSIVKSCSGLDDFKL--ARQLHAHVLKSEFGADLIAQNALISMYTKFSQMADAINVF 257

Query: 128 NSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISG------------ 175
           + + IK++ISW +MIAG+ +     EA+  F EM  ++V      + G            
Sbjct: 258 SRIIIKDLISWGSMIAGFSQLGYELEALCHFREMLSQSVYQPNEFVFGSAFSACSKLLEP 317

Query: 176 ----------------------------YCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGF 207
                                       Y + G +E    +F  + + ++V+W A+I GF
Sbjct: 318 DCGRQIHGLCIKFGLGSDLFAGCSLCDMYAKCGFLESARTVFYHIEKPDLVAWNAIIAGF 377

Query: 208 AWNGFHKESLLLFIEMKGICDNGNNCNVQS----CNS--MINGYIRFGRLEEAQNLFDTV 261
           A     KES   F +M+      N+  V S    C+   M+N  I+             +
Sbjct: 378 ASVSNAKESSSFFSQMRHTGLVPNDVTVLSLLCACSEPVMLNHGIQVHSYIVKMGFNLDI 437

Query: 262 PVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDR-DAVAWTAMISGLVQNELFVEATYLF 320
           PV       S++  Y     +++A  +F ++ ++ D V+W  +++  +Q     E   L 
Sbjct: 438 PV-----CNSLLSMYSKCSNLNDALQVFEDIGNKADIVSWNTLLTACLQQNQAGEVLRLT 492

Query: 321 MEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKC 380
             M A  + P + T + +  ++G  A+ ++G QIHC +MK+    D+ + N LI+MY KC
Sbjct: 493 KLMFASRIKPDHVTLTNVLVSSGQIASYEVGSQIHCFIMKSGLNLDISVSNALINMYTKC 552

Query: 381 GVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGIL 440
           G ++ A  +F ++ + D++SW+S+++G++  G   E  ++F +M   G  PN +TF+GIL
Sbjct: 553 GSLECARKMFDSIGNPDIISWSSLIVGYAQAGCGKEAFELFRTMRGLGVKPNEITFVGIL 612

Query: 441 SACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPD 500
           +ACSH G+V  G +L+  M + Y+I P  EH   M++LL RAG +  AE+F+ ++PF PD
Sbjct: 613 TACSHIGMVEEGLKLYRTMQEDYRISPTKEHCSCMVDLLARAGCLDVAEDFIRQMPFVPD 672

Query: 501 HRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRM 560
             +W  LL AC    GN E+ + AA+ +L++DP N+ A V+LCNI+A+SG   +  +LR 
Sbjct: 673 VVVWKTLLAACKV-HGNLEVGKRAAENVLKIDPSNSAAVVMLCNIHASSGHWKDFARLRS 731

Query: 561 DMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
            M    V KVPG SW+     + +FL+ D +  +  +I
Sbjct: 732 SMRRMDVGKVPGQSWIEIKDKVHVFLAEDNLHPERGKI 769



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 122/447 (27%), Positives = 202/447 (45%), Gaps = 59/447 (13%)

Query: 120 LNEARKVFNSMPIKN----VISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISG 175
           L   RK+   M   N    +I  N +++ Y +C  + EA  +F+ M  +NVV+WTSMISG
Sbjct: 114 LEHGRKIHRHMLTCNYQPDMILQNHILSMYGKCGSLKEARNMFDSMPLKNVVSWTSMISG 173

Query: 176 YCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKG-ICDNGNNCN 234
           Y R GE +    L+ +M R   +      G    +    +   L  ++   +  +    +
Sbjct: 174 YSRYGEEDNAITLYVQMLRSGHIPDHFTFGSIVKSCSGLDDFKLARQLHAHVLKSEFGAD 233

Query: 235 VQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPD 294
           + + N++I+ Y +F ++ +A N+F  + ++D ISW SMI G+  +G     Y L      
Sbjct: 234 LIAQNALISMYTKFSQMADAINVFSRIIIKDLISWGSMIAGFSQLG-----YEL------ 282

Query: 295 RDAVAWTAMISGLVQNELFVEATYLFMEMRAHGV-PPLNATFSVLFGAAGATANIDLGRQ 353
                               EA   F EM +  V  P    F   F A       D GRQ
Sbjct: 283 --------------------EALCHFREMLSQSVYQPNEFVFGSAFSACSKLLEPDCGRQ 322

Query: 354 IHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGL 413
           IH + +K    SDL     L  MYAKCG +++A  +F ++   DLV+WN+++ GF+    
Sbjct: 323 IHGLCIKFGLGSDLFAGCSLCDMYAKCGFLESARTVFYHIEKPDLVAWNAIIAGFASVSN 382

Query: 414 ANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYV 473
           A E+   F  M  +G  PN VT L +L ACS   +++ G ++ +     Y ++ G    +
Sbjct: 383 AKESSSFFSQMRHTGLVPNDVTVLSLLCACSEPVMLNHGIQVHS-----YIVKMGFNLDI 437

Query: 474 ----SMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLL 529
               S++++  +   + +A +    +  + D   W  LL AC        + ++ A  +L
Sbjct: 438 PVCNSLLSMYSKCSNLNDALQVFEDIGNKADIVSWNTLLTAC--------LQQNQAGEVL 489

Query: 530 ELDPLN-----APAHVVLCNIYAASGR 551
            L  L       P HV L N+  +SG+
Sbjct: 490 RLTKLMFASRIKPDHVTLTNVLVSSGQ 516



 Score =  135 bits (341), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 107/425 (25%), Positives = 190/425 (44%), Gaps = 70/425 (16%)

Query: 74  VSWTAMICGLADAGRVCEARKLFEEM----PERNVVSWNSMVVGLIRNGELNEARKVFNS 129
           V++T +I   +    +   RK+   M     + +++  N ++    + G L EAR +F+S
Sbjct: 99  VTYTHLINACSSLRSLEHGRKIHRHMLTCNYQPDMILQNHILSMYGKCGSLKEARNMFDS 158

Query: 130 MPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEER------------------------- 164
           MP+KNV+SW +MI+GY        AI L+ +M                            
Sbjct: 159 MPLKNVVSWTSMISGYSRYGEEDNAITLYVQMLRSGHIPDHFTFGSIVKSCSGLDDFKLA 218

Query: 165 --------------NVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWN 210
                         +++   ++IS Y +  ++ +   +F R+  K+++SW +MI GF+  
Sbjct: 219 RQLHAHVLKSEFGADLIAQNALISMYTKFSQMADAINVFSRIIIKDLISWGSMIAGFSQL 278

Query: 211 GFHKESLLLFIEMKGICDNGNNCNV-------------QSCNSMINGY-IRFGRLEEAQN 256
           G+  E+L  F EM        N  V               C   I+G  I+FG      +
Sbjct: 279 GYELEALCHFREMLSQSVYQPNEFVFGSAFSACSKLLEPDCGRQIHGLCIKFGL---GSD 335

Query: 257 LFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEA 316
           LF         +  S+ D Y   G + +A  +F+++   D VAW A+I+G        E+
Sbjct: 336 LF---------AGCSLCDMYAKCGFLESARTVFYHIEKPDLVAWNAIIAGFASVSNAKES 386

Query: 317 TYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISM 376
           +  F +MR  G+ P + T   L  A      ++ G Q+H  ++K     D+ + N L+SM
Sbjct: 387 SSFFSQMRHTGLVPNDVTVLSLLCACSEPVMLNHGIQVHSYIVKMGFNLDIPVCNSLLSM 446

Query: 377 YAKCGVIDNAYNIFSNMVSR-DLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVT 435
           Y+KC  +++A  +F ++ ++ D+VSWN+++        A E L++ + M  S   P+ VT
Sbjct: 447 YSKCSNLNDALQVFEDIGNKADIVSWNTLLTACLQQNQAGEVLRLTKLMFASRIKPDHVT 506

Query: 436 FLGIL 440
              +L
Sbjct: 507 LTNVL 511



 Score = 88.6 bits (218), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 73/280 (26%), Positives = 132/280 (47%), Gaps = 16/280 (5%)

Query: 304 ISGLVQNELFVEATYLFMEMRAHGVPPLNA-TFSVLFGAAGATANIDLGRQIHCVLMKTE 362
           I  L +  L  EA   F   +     PL + T++ L  A  +  +++ GR+IH  ++   
Sbjct: 69  IISLCKKNLHREALKAFDIFQKCSSSPLKSVTYTHLINACSSLRSLEHGRKIHRHMLTCN 128

Query: 363 SESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFE 422
            + D+IL+N ++SMY KCG +  A N+F +M  +++VSW SM+ G+S +G  +  + ++ 
Sbjct: 129 YQPDMILQNHILSMYGKCGSLKEARNMFDSMPLKNVVSWTSMISGYSRYGEEDNAITLYV 188

Query: 423 SMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYV--SMINLLG 480
            ML SG  P+  TF  I+ +CS         +L      V K + G +     ++I++  
Sbjct: 189 QMLRSGHIPDHFTFGSIVKSCSGLDDFKLARQLHA---HVLKSEFGADLIAQNALISMYT 245

Query: 481 RAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHV 540
           +  ++ +A     R+  + D   WG+++   GF +   E+      R +    +  P   
Sbjct: 246 KFSQMADAINVFSRIIIK-DLISWGSMIA--GFSQLGYELEALCHFREMLSQSVYQPNEF 302

Query: 541 VLCNIYAASGRHVEE------HKLRMDMGLKGVRKVPGCS 574
           V  + ++A  + +E       H L +  GL G     GCS
Sbjct: 303 VFGSAFSACSKLLEPDCGRQIHGLCIKFGL-GSDLFAGCS 341


>gi|147854092|emb|CAN83391.1| hypothetical protein VITISV_041405 [Vitis vinifera]
          Length = 886

 Score =  292 bits (747), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 198/644 (30%), Positives = 313/644 (48%), Gaps = 80/644 (12%)

Query: 16  SSITKYSKRGFIDEAKALFQLMPQR-NVVSYNAMLSGFLQNGRLSEARRLFEEM---P-- 69
           S I  Y        AK +FQ +    ++  +N +++   +N    E   +F  +   P  
Sbjct: 235 SLINLYFSCHLFQSAKLVFQTIENPLDITLWNGLMAACTKNFIFIEGLEVFHRLLHFPYL 294

Query: 70  ERNVVSWTAMICGLADAGRVCEARKLFEEMPER----NVVSWNSMVVGLIRNGELNEARK 125
           + +  ++ +++   +  GRV   + +   + +     +VV  +S V    +     +A K
Sbjct: 295 KPDAFTYPSVLKACSGLGRVGYGKMVHTHVIKSGFAMDVVVMSSAVGMYAKCNVFEDAIK 354

Query: 126 VFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEME----ERNVVTWTSMISGYCRAGE 181
           +F+ MP ++V SWN +I+ Y +     +A+ LFEEM+    + + VT T++IS   R  +
Sbjct: 355 LFDEMPERDVASWNNVISCYYQDGQPEKALELFEEMKVSGFKPDSVTLTTVISSCARLLD 414

Query: 182 VEEGY-----------------------------CL------FRRMPRKNVVSWTAMIGG 206
           +E G                              CL      F ++ RKNVVSW +MI G
Sbjct: 415 LERGKEIHMELVRSGFALDGFVSSALVDMYGKCGCLEMAKEVFEQIQRKNVVSWNSMIAG 474

Query: 207 FAWNGFHKESLLLFIEM--KGI-------------CDNGNNCNVQSCNSMINGYIRFGRL 251
           ++  G  K  + LF  M  +GI             C    N  +      I+GYI   R+
Sbjct: 475 YSLKGDSKSCIELFRRMDEEGIRPTLTTLSSILMACSRSVNLQL---GKFIHGYIIRNRV 531

Query: 252 EEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNE 311
           E            D    +S+ID Y   G + +A  +F NMP  + V+W  MISG V+  
Sbjct: 532 EA-----------DIFVNSSLIDLYFKCGNIGSAENVFQNMPKTNVVSWNVMISGYVKVG 580

Query: 312 LFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILEN 371
            ++EA  +F +MR  GV P   TF+ +  A    A ++ G++IH  +++++ E + ++  
Sbjct: 581 SYLEALVIFTDMRKAGVKPDAITFTSVLPACSQLAVLEKGKEIHNFIIESKLEINEVVMG 640

Query: 372 CLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHP 431
            L+ MYAKCG +D A +IF+ +  RD VSW SM+  +  HG A E LK+FE M +S   P
Sbjct: 641 ALLDMYAKCGAVDEALHIFNQLPERDFVSWTSMIAAYGSHGQAFEALKLFEKMQQSDAKP 700

Query: 432 NSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEF 491
           + VTFL ILSACSHAGLV  G   FN M   Y  +P  EHY  +I+LLGR G+++EA E 
Sbjct: 701 DKVTFLAILSACSHAGLVDEGCYYFNQMIAEYGFKPAVEHYSCLIDLLGRVGRLREAYEI 760

Query: 492 VLRLP-FEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASG 550
           + R P    D  +   L  AC       ++ E   + L+E DP +   +++L N+YA+  
Sbjct: 761 LQRTPDIREDVGLLSTLFSACHL-HKKLDLGEQIGRLLIEKDPDDPSTYIILSNMYASVK 819

Query: 551 RHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQ 594
           +  E  K+R+ +   G++K PGCSW+     I  F+  DK   Q
Sbjct: 820 KWDEVRKVRLKIKELGLKKNPGCSWIEVGKRIHPFVVEDKSHPQ 863



 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 106/432 (24%), Positives = 198/432 (45%), Gaps = 55/432 (12%)

Query: 11  VVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMP- 69
           VV ++S++  Y+K    ++A  LF  MP+R+V S+N ++S + Q+G+  +A  LFEEM  
Sbjct: 333 VVVMSSAVGMYAKCNVFEDAIKLFDEMPERDVASWNNVISCYYQDGQPEKALELFEEMKV 392

Query: 70  ---ERNVVSWTAMI---------------------CGLADAGRVCE-------------- 91
              + + V+ T +I                      G A  G V                
Sbjct: 393 SGFKPDSVTLTTVISSCARLLDLERGKEIHMELVRSGFALDGFVSSALVDMYGKCGCLEM 452

Query: 92  ARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECC-- 149
           A+++FE++  +NVVSWNSM+ G    G+     ++F  M  + +      ++  +  C  
Sbjct: 453 AKEVFEQIQRKNVVSWNSMIAGYSLKGDSKSCIELFRRMDEEGIRPTLTTLSSILMACSR 512

Query: 150 ----MMGEAI--VLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAM 203
                +G+ I   +     E ++   +S+I  Y + G +     +F+ MP+ NVVSW  M
Sbjct: 513 SVNLQLGKFIHGYIIRNRVEADIFVNSSLIDLYFKCGNIGSAENVFQNMPKTNVVSWNVM 572

Query: 204 IGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPV 263
           I G+   G + E+L++F +M+     G   +  +  S++    +   LE+ + + + +  
Sbjct: 573 ISGYVKVGSYLEALVIFTDMR---KAGVKPDAITFTSVLPACSQLAVLEKGKEIHNFIIE 629

Query: 264 R----DEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYL 319
                +E+   +++D Y   G V  A ++F+ +P+RD V+WT+MI+    +    EA  L
Sbjct: 630 SKLEINEVVMGALLDMYAKCGAVDEALHIFNQLPERDFVSWTSMIAAYGSHGQAFEALKL 689

Query: 320 FMEMRAHGVPPLNATFSVLFGAAGATANIDLG-RQIHCVLMKTESESDLILENCLISMYA 378
           F +M+     P   TF  +  A      +D G    + ++ +   +  +   +CLI +  
Sbjct: 690 FEKMQQSDAKPDKVTFLAILSACSHAGLVDEGCYYFNQMIAEYGFKPAVEHYSCLIDLLG 749

Query: 379 KCGVIDNAYNIF 390
           + G +  AY I 
Sbjct: 750 RVGRLREAYEIL 761



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 85/372 (22%), Positives = 162/372 (43%), Gaps = 47/372 (12%)

Query: 134 NVISWNAMIAGYVECCMMGEAIVLFEEMEER-NVVTWTSMISGYCRAGEVEEGYCLFRRM 192
           N+    ++I  Y  C +   A ++F+ +E   ++  W  +++   +     EG  +F R+
Sbjct: 229 NITLCKSLINLYFSCHLFQSAKLVFQTIENPLDITLWNGLMAACTKNFIFIEGLEVFHRL 288

Query: 193 ---P--RKNVVSWTAMI---GGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMING 244
              P  + +  ++ +++    G    G+ K      +    +  +G   +V   +S +  
Sbjct: 289 LHFPYLKPDAFTYPSVLKACSGLGRVGYGK------MVHTHVIKSGFAMDVVVMSSAVGM 342

Query: 245 YIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMI 304
           Y +    E+A  LFD +P RD  SW ++I  Y   GQ           P++         
Sbjct: 343 YAKCNVFEDAIKLFDEMPERDVASWNNVISCYYQDGQ-----------PEK--------- 382

Query: 305 SGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESE 364
                      A  LF EM+  G  P + T + +  +     +++ G++IH  L+++   
Sbjct: 383 -----------ALELFEEMKVSGFKPDSVTLTTVISSCARLLDLERGKEIHMELVRSGFA 431

Query: 365 SDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESM 424
            D  + + L+ MY KCG ++ A  +F  +  +++VSWNSM+ G+S  G +   +++F  M
Sbjct: 432 LDGFVSSALVDMYGKCGCLEMAKEVFEQIQRKNVVSWNSMIAGYSLKGDSKSCIELFRRM 491

Query: 425 LESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGK 484
            E G  P   T   IL ACS +  +  G +  +      +++       S+I+L  + G 
Sbjct: 492 DEEGIRPTLTTLSSILMACSRSVNLQLG-KFIHGYIIRNRVEADIFVNSSLIDLYFKCGN 550

Query: 485 IKEAEEFVLRLP 496
           I  AE     +P
Sbjct: 551 IGSAENVFQNMP 562



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 73/283 (25%), Positives = 134/283 (47%), Gaps = 46/283 (16%)

Query: 4   RNHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARR 63
           RN  ++ +   +S I  Y K G I  A+ +FQ MP+ NVVS+N M+SG+++ G   EA  
Sbjct: 528 RNRVEADIFVNSSLIDLYFKCGNIGSAENVFQNMPKTNVVSWNVMISGYVKVGSYLEALV 587

Query: 64  LFEEMPERNV----VSWTAMICGLADAGRVCEARK----LFEEMPERNVVSWNSMVVGLI 115
           +F +M +  V    +++T+++   +    + + ++    + E   E N V   +++    
Sbjct: 588 IFTDMRKAGVKPDAITFTSVLPACSQLAVLEKGKEIHNFIIESKLEINEVVMGALLDMYA 647

Query: 116 RNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNV----VTWTS 171
           + G ++EA  +FN +P ++ +SW +MIA Y       EA+ LFE+M++ +     VT+ +
Sbjct: 648 KCGAVDEALHIFNQLPERDFVSWTSMIAAYGSHGQAFEALKLFEKMQQSDAKPDKVTFLA 707

Query: 172 MISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGN 231
           ++S    AG V+EG   F +M                                 I + G 
Sbjct: 708 ILSACSHAGLVDEGCYYFNQM---------------------------------IAEYGF 734

Query: 232 NCNVQSCNSMINGYIRFGRLEEAQNLFDTVP-VRDEISWTSMI 273
              V+  + +I+   R GRL EA  +    P +R+++   S +
Sbjct: 735 KPAVEHYSCLIDLLGRVGRLREAYEILQRTPDIREDVGLLSTL 777



 Score = 45.4 bits (106), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 44/187 (23%), Positives = 85/187 (45%), Gaps = 13/187 (6%)

Query: 341 AAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSR-DLV 399
            AG+     LG+ IH  ++    ++++ L   LI++Y  C +  +A  +F  + +  D+ 
Sbjct: 204 TAGSALEELLGKLIHQKIVSLGLQNNITLCKSLINLYFSCHLFQSAKLVFQTIENPLDIT 263

Query: 400 SWNSMVMGFSHHGLANETLKVFESMLE-SGTHPNSVTFLGILSACSHAGLVSRGWELFNA 458
            WN ++   + + +  E L+VF  +L      P++ T+  +L ACS  G V  G      
Sbjct: 264 LWNGLMAACTKNFIFIEGLEVFHRLLHFPYLKPDAFTYPSVLKACSGLGRVGYG-----K 318

Query: 459 MFDVYKIQPGPEHYV----SMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFC 514
           M   + I+ G    V    S + +  +    ++A +    +P E D   W  ++ +C + 
Sbjct: 319 MVHTHVIKSGFAMDVVVMSSAVGMYAKCNVFEDAIKLFDEMP-ERDVASWNNVI-SCYYQ 376

Query: 515 EGNAEIA 521
           +G  E A
Sbjct: 377 DGQPEKA 383


>gi|297740136|emb|CBI30318.3| unnamed protein product [Vitis vinifera]
          Length = 861

 Score =  291 bits (746), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 189/642 (29%), Positives = 311/642 (48%), Gaps = 74/642 (11%)

Query: 21  YSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEM------PERNVV 74
           YS    +D+A  LF  M  R+ VS++ M+ GF + G        F E+      P+   +
Sbjct: 123 YSYYRALDDAYGLFDGMCVRDSVSWSVMVGGFAKVGDYINCFGTFRELIRCGARPDNYTL 182

Query: 75  SWTAMIC--------GLADAGRVC----EARKLFEEMPERNVVSWNSMVVGLIRNGELNE 122
            +    C         L D    C    +AR LF++M ER++V+W  M+ G    G+ NE
Sbjct: 183 PFVIRACRDLKNLQMALVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYAECGKANE 242

Query: 123 ARKVFNSMPIKNVISWN-AMIAGYVECCMMG---EAIVLFEEMEER----NVVTWTSMIS 174
           +  +F  M  + V+    AM+     C  +G   +A ++ + ++ +    +V+  T+MI 
Sbjct: 243 SLVLFEKMREEGVVPDKVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQLDVILGTAMID 302

Query: 175 GYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLF------------IE 222
            Y + G VE    +F RM  KNV+SW+AMI  + ++G  +++L LF            I 
Sbjct: 303 MYAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFRMMLSSGMLPDKIT 362

Query: 223 MKGICDNGNNC--------------------NVQSCNSMINGYIRFGRLEEAQNLFDTVP 262
           +  +     NC                    N+   N +++ Y  +  L++A  LFD + 
Sbjct: 363 LASLLYACINCRNLTQVRQVHAQASVHGMLQNLIVANKLVHFYSYYRALDDAYGLFDGMC 422

Query: 263 VRDEISWTSMIDGYLSVGQVSNAYYLFHNM------PDRDAVAWTAMISGLVQNELFVEA 316
           VRD +SW+ M+ G+  VG   N +  F  +      PD   + +    +         E+
Sbjct: 423 VRDSVSWSVMVGGFAKVGDYMNCFGTFRELIRCGARPDNYTLPFCGNAN---------ES 473

Query: 317 TYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISM 376
             LF +MR  GV P       +  A      +   R I   + + + + D+IL   +I M
Sbjct: 474 LVLFDKMREEGVVPDKVAMVTVVFACAKLGAMHKARTIDDYIQRKKFQLDVILGTAMIDM 533

Query: 377 YAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTF 436
           +AKCG +++A  IF  M  ++++SW++M+  + +HG   + L +F  ML SG  PN +T 
Sbjct: 534 HAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFPMMLRSGILPNKITL 593

Query: 437 LGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLP 496
           + +L ACSHAGLV  G   F+ M++ Y ++   +HY  +++LLGRAG++ EA + +  + 
Sbjct: 594 VSLLYACSHAGLVEEGLRFFSLMWEDYSVRADVKHYTCVVDLLGRAGRLDEALKLIESMT 653

Query: 497 FEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEH 556
            E D  +WGA LGAC     +  +AE AA  LLEL P N   +++L NIYA +GR  +  
Sbjct: 654 VEKDEGLWGAFLGACR-THKDVVLAEKAATSLLELQPQNPGHYILLSNIYANAGRWEDVA 712

Query: 557 KLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
           K R  M  + ++K+PG +W+  +     F  GD    +  EI
Sbjct: 713 KTRDLMSQRRLKKIPGWTWIEVDNKSHQFSVGDTTHPRSKEI 754



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 77/290 (26%), Positives = 133/290 (45%), Gaps = 42/290 (14%)

Query: 165 NVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMK 224
           N+V    +I  Y     +++ Y LF  M  ++ VSW+ M+GGFA  G +      F E+ 
Sbjct: 112 NIVVANKLIYFYSYYRALDDAYGLFDGMCVRDSVSWSVMVGGFAKVGDYINCFGTFRELI 171

Query: 225 GICDNGNNCN----VQSCN-------SMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMI 273
                 +N      +++C        ++++ Y++   +E+A+ LFD +  RD ++WT MI
Sbjct: 172 RCGARPDNYTLPFVIRACRDLKNLQMALVDMYVKCREIEDARFLFDKMQERDLVTWTVMI 231

Query: 274 DGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNA 333
            GY   G+ +                               E+  LF +MR  GV P   
Sbjct: 232 GGYAECGKAN-------------------------------ESLVLFEKMREEGVVPDKV 260

Query: 334 TFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNM 393
               +  A      +   R I   + + + + D+IL   +I MYAKCG +++A  IF  M
Sbjct: 261 AMVTVVFACAKLGAMHKARIIDDYIQRKKFQLDVILGTAMIDMYAKCGCVESAREIFDRM 320

Query: 394 VSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSAC 443
             ++++SW++M+  + +HG   + L +F  ML SG  P+ +T   +L AC
Sbjct: 321 EEKNVISWSAMIAAYGYHGQGRKALDLFRMMLSSGMLPDKITLASLLYAC 370



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 34/120 (28%), Positives = 55/120 (45%), Gaps = 2/120 (1%)

Query: 324 RAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVI 383
           + H +  LN  F +   A     N+   RQ+H          ++++ N LI  Y+    +
Sbjct: 72  KFHFLQRLNPKFYI--SALVNCRNLTQVRQVHAQASVHGMLENIVVANKLIYFYSYYRAL 129

Query: 384 DNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSAC 443
           D+AY +F  M  RD VSW+ MV GF+  G        F  ++  G  P++ T   ++ AC
Sbjct: 130 DDAYGLFDGMCVRDSVSWSVMVGGFAKVGDYINCFGTFRELIRCGARPDNYTLPFVIRAC 189


>gi|255565124|ref|XP_002523554.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223537116|gb|EEF38749.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 611

 Score =  291 bits (746), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 182/581 (31%), Positives = 305/581 (52%), Gaps = 28/581 (4%)

Query: 14  LTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLF------EE 67
           LT  I  Y+    +  A+ LF  MPQ NV ++ A+   +L++G   +  + +      + 
Sbjct: 33  LTKLIQMYADCDHLFSAQRLFDKMPQPNVYAWTAIFGFYLRHGMYDKCVQNYGFMKYSDV 92

Query: 68  MPERNVVSWTAMICG--LADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARK 125
           +P+  V       C   L   G +   + +     E N+   NS++   ++ G    AR 
Sbjct: 93  LPDNYVFPKVLRACTQLLWFEGGIWIHKDVIVCGCESNLQVCNSLIDMYVKCGNARSARL 152

Query: 126 VFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEME----ERNVVTWTSMISGYCRAGE 181
           VF  M  +++ SWN+MI+GYV   +   A+ L   M     E +VVTW +++  YC+ G 
Sbjct: 153 VFEEMEERDLFSWNSMISGYVSNGLADLAVELLNCMRLDGFEPDVVTWNTLMDAYCQMGR 212

Query: 182 VEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEM--KGICDNGNNCNVQSCN 239
            +E + + +++ + N++SWT +I  ++  G H  SL +F +M  + +     +C    C+
Sbjct: 213 FDEAWEVLKQIEQPNIISWTTLISSYSKIGEHDMSLRVFQDMIIREVVSPDLDC---LCS 269

Query: 240 SMIN----GYIRFGR-LEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPD 294
            +++    G +R G+ +       +T  V    +  +++  Y   G++ +A  +F  M  
Sbjct: 270 VLVSCRHIGALRSGKEIHGYGTKMETNTVFYSSAGAALLTMYAKCGRIQDAINVFELMDK 329

Query: 295 RDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQI 354
            D V W AMI G V+ +L  +A   F EM+   +     T S +        ++  G  I
Sbjct: 330 SDIVTWNAMILGFVELDLGKQAIECFREMQRMDIKNDQTTISTIL----PVCDLQYGNPI 385

Query: 355 HCVLMKTESESDLI-LENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGL 413
           H  + K+ + S ++ + N +I MY KCG + +AY IF +M ++D+VSWN+M+ GF  HG 
Sbjct: 386 HAYVRKSITLSSVVTVWNAVIHMYCKCGCVRSAYTIFCSMPNKDVVSWNTMIGGFGMHGH 445

Query: 414 ANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYV 473
               LK+ + M+ SG  PNS TF  +LSACSH+GLV  G+ LF +M + Y I P  EHY 
Sbjct: 446 GQAALKLLKEMILSGIFPNSTTFTSVLSACSHSGLVDEGFRLFRSMTEDYSITPRMEHYS 505

Query: 474 SMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDP 533
            ++++L RAG+  +A  F+ ++P EPD  IWGALL AC   + N +    AA++L+ ++P
Sbjct: 506 CIVDMLARAGQFADAVTFIHKMPLEPDKSIWGALLAACRAYQ-NLDFGRLAAEQLIRMEP 564

Query: 534 LNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCS 574
             A  +V L NIYA +GR  +  ++R ++  KG+ K  G S
Sbjct: 565 KCAGHYVTLSNIYARAGRWDDAGRVRKEIEGKGLVKPSGQS 605



 Score =  111 bits (278), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 91/351 (25%), Positives = 156/351 (44%), Gaps = 60/351 (17%)

Query: 11  VVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPE 70
           VV   + +  Y + G  DEA  + + + Q N++S+  ++S + + G    + R+F++M  
Sbjct: 197 VVTWNTLMDAYCQMGRFDEAWEVLKQIEQPNIISWTTLISSYSKIGEHDMSLRVFQDMII 256

Query: 71  RNVVSWT-AMICGLADAGRVCEARKLFEEMP------ERNVVSWNSMVVGLI----RNGE 119
           R VVS     +C +  + R   A +  +E+       E N V ++S    L+    + G 
Sbjct: 257 REVVSPDLDCLCSVLVSCRHIGALRSGKEIHGYGTKMETNTVFYSSAGAALLTMYAKCGR 316

Query: 120 LNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERN-------------- 165
           + +A  VF  M   ++++WNAMI G+VE  +  +AI  F EM+  +              
Sbjct: 317 IQDAINVFELMDKSDIVTWNAMILGFVELDLGKQAIECFREMQRMDIKNDQTTISTILPV 376

Query: 166 ----------------------VVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAM 203
                                 V  W ++I  YC+ G V   Y +F  MP K+VVSW  M
Sbjct: 377 CDLQYGNPIHAYVRKSITLSSVVTVWNAVIHMYCKCGCVRSAYTIFCSMPNKDVVSWNTM 436

Query: 204 IGGFAWNGFHKESLLLFIEM--KGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTV 261
           IGGF  +G  + +L L  EM   GI  N       +  S+++     G ++E   LF ++
Sbjct: 437 IGGFGMHGHGQAALKLLKEMILSGIFPNST-----TFTSVLSACSHSGLVDEGFRLFRSM 491

Query: 262 PVRDEIS-----WTSMIDGYLSVGQVSNAYYLFHNMP-DRDAVAWTAMISG 306
                I+     ++ ++D     GQ ++A    H MP + D   W A+++ 
Sbjct: 492 TEDYSITPRMEHYSCIVDMLARAGQFADAVTFIHKMPLEPDKSIWGALLAA 542



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 77/296 (26%), Positives = 133/296 (44%), Gaps = 15/296 (5%)

Query: 264 RDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEM 323
           +D    T +I  Y     + +A  LF  MP  +  AWTA+    +++ ++ +    +  M
Sbjct: 28  KDPFMLTKLIQMYADCDHLFSAQRLFDKMPQPNVYAWTAIFGFYLRHGMYDKCVQNYGFM 87

Query: 324 RAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVI 383
           +   V P N  F  +  A       + G  IH  ++    ES+L + N LI MY KCG  
Sbjct: 88  KYSDVLPDNYVFPKVLRACTQLLWFEGGIWIHKDVIVCGCESNLQVCNSLIDMYVKCGNA 147

Query: 384 DNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSAC 443
            +A  +F  M  RDL SWNSM+ G+  +GLA+  +++   M   G  P+ VT+  ++ A 
Sbjct: 148 RSARLVFEEMEERDLFSWNSMISGYVSNGLADLAVELLNCMRLDGFEPDVVTWNTLMDAY 207

Query: 444 SHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGK----IKEAEEFVLRLPFEP 499
              G     WE+   +      QP    + ++I+   + G+    ++  ++ ++R    P
Sbjct: 208 CQMGRFDEAWEVLKQIE-----QPNIISWTTLISSYSKIGEHDMSLRVFQDMIIREVVSP 262

Query: 500 DHRIWGALLGAC---GFCEGNAEIAEHAAKRLLELDPL-NAPAHVVLCNIYAASGR 551
           D     ++L +C   G      EI  +  K  +E + +  + A   L  +YA  GR
Sbjct: 263 DLDCLCSVLVSCRHIGALRSGKEIHGYGTK--METNTVFYSSAGAALLTMYAKCGR 316



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 42/146 (28%), Positives = 73/146 (50%), Gaps = 10/146 (6%)

Query: 9   SLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEM 68
           S+V    + I  Y K G +  A  +F  MP ++VVS+N M+ GF  +G    A +L +EM
Sbjct: 397 SVVTVWNAVIHMYCKCGCVRSAYTIFCSMPNKDVVSWNTMIGGFGMHGHGQAALKLLKEM 456

Query: 69  PER----NVVSWTAMICGLADAGRVCEARKLFEEMPERNVVS-----WNSMVVGLIRNGE 119
                  N  ++T+++   + +G V E  +LF  M E   ++     ++ +V  L R G+
Sbjct: 457 ILSGIFPNSTTFTSVLSACSHSGLVDEGFRLFRSMTEDYSITPRMEHYSCIVDMLARAGQ 516

Query: 120 LNEARKVFNSMPIKNVIS-WNAMIAG 144
             +A    + MP++   S W A++A 
Sbjct: 517 FADAVTFIHKMPLEPDKSIWGALLAA 542



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 57/251 (22%), Positives = 107/251 (42%), Gaps = 39/251 (15%)

Query: 351 GRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSH 410
           G+QIH  +  +    D  +   LI MYA C  + +A  +F  M   ++ +W ++   +  
Sbjct: 14  GKQIHQQITVSGWGKDPFMLTKLIQMYADCDHLFSAQRLFDKMPQPNVYAWTAIFGFYLR 73

Query: 411 HGLANETLKVFESMLESGTHPNSVTFLGILSACS-----------HAGLVSRGWE----L 455
           HG+ ++ ++ +  M  S   P++  F  +L AC+           H  ++  G E    +
Sbjct: 74  HGMYDKCVQNYGFMKYSDVLPDNYVFPKVLRACTQLLWFEGGIWIHKDVIVCGCESNLQV 133

Query: 456 FNAMFDVYKIQPGPEH----------------YVSMINLLGRAGKIKEAEEFV--LRLP- 496
            N++ D+Y ++ G                   + SMI+     G    A E +  +RL  
Sbjct: 134 CNSLIDMY-VKCGNARSARLVFEEMEERDLFSWNSMISGYVSNGLADLAVELLNCMRLDG 192

Query: 497 FEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEH 556
           FEPD   W  L+ A  +C+      + A + L +++  N  +   L + Y+  G H    
Sbjct: 193 FEPDVVTWNTLMDA--YCQMGR--FDEAWEVLKQIEQPNIISWTTLISSYSKIGEHDMSL 248

Query: 557 KLRMDMGLKGV 567
           ++  DM ++ V
Sbjct: 249 RVFQDMIIREV 259


>gi|449491572|ref|XP_004158941.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Cucumis sativus]
          Length = 1004

 Score =  291 bits (746), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 180/631 (28%), Positives = 318/631 (50%), Gaps = 55/631 (8%)

Query: 21  YSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNV----VSW 76
           Y+K G I+ A  +F  MP++N V++N +L+G+ Q G ++   +LF  M E +V     + 
Sbjct: 258 YAKCGEIELASKMFIGMPEQNDVTWNVLLNGYAQRGDVTGVLKLFCSMMELDVKCNEFTL 317

Query: 77  TAMI-------------------------------CGLADAGRVC----EARKLFEEMPE 101
           T ++                               CGL D    C    +A  +F+ + +
Sbjct: 318 TTVLKGCANSKNLKQGQVIHSLIIKCGYEGNEFIGCGLVDMYSKCGLAIDAIGVFKTIKK 377

Query: 102 RNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECC------MMGEAI 155
            ++V W++++  L + G+  E+ K+F+ M + + +     I   +           G++I
Sbjct: 378 PDIVVWSALITCLDQQGQSEESIKLFHLMRLGDTLPNQYTICSLLSAATNTGNLQYGQSI 437

Query: 156 --VLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFH 213
              +++   E +V    ++++ Y + G V +G  L+  M  ++++SW A + G    G +
Sbjct: 438 HACVWKYGFETDVAVSNALVTMYMKNGCVHDGTKLYESMVDRDLISWNAYLSGLHDCGMY 497

Query: 214 KESLLLFIEM--KGICDNGNN--CNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISW 269
              L +F  M  +G   N       + SC+ + +  + +GR   A  + + +   + +  
Sbjct: 498 DRPLTIFYHMLEEGFIPNMYTFISILGSCSCLFD--VHYGRQVHAHIIKNQLDDNNFVC- 554

Query: 270 TSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVP 329
           T++ID Y     + +A   F+ +  RD   WT +I+   Q     +A   F +M+  GV 
Sbjct: 555 TALIDMYAKCMYLEDADVAFNRLSVRDLFTWTVIITNYAQTNQGEKALNYFRQMQQEGVK 614

Query: 330 PLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNI 389
           P   T +       + A+++ G+Q+H ++ K+   SD+ + + L+ MYAKCG ++ A  +
Sbjct: 615 PNEFTLAGCLSGCSSLASLEGGQQLHSMVFKSGHVSDMFVGSALVDMYAKCGCMEEAEAL 674

Query: 390 FSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLV 449
           F  ++ RD ++WN+++ G++ +G  N+ L  F  ML+ G  P+ VTF GILSACSH GLV
Sbjct: 675 FEALIRRDTIAWNTIICGYAQNGQGNKALTAFRMMLDEGISPDGVTFTGILSACSHQGLV 734

Query: 450 SRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLG 509
             G E FN+M+  + I P  +H   M+++LGR GK  E E+F+ ++    +  IW  +LG
Sbjct: 735 EEGKEHFNSMYRDFGISPTVDHCACMVDILGRVGKFDELEDFIQKMQLSQNALIWETVLG 794

Query: 510 ACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRK 569
           A      N  + E AA +L EL P    ++++L NI+A  GR  +  ++R  M  KGV+K
Sbjct: 795 ASKM-HNNLVLGEKAANKLFELQPEEESSYILLSNIFATEGRWDDVKRVRSLMSSKGVKK 853

Query: 570 VPGCSWLMRNGGIQMFLSGDKIPAQVAEILL 600
            PGCSW+  NG +  F+S D    Q+ EI L
Sbjct: 854 EPGCSWVEANGQVHTFVSHDYSHPQIQEIHL 884



 Score =  168 bits (426), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 105/382 (27%), Positives = 187/382 (48%), Gaps = 17/382 (4%)

Query: 76  WTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNV 135
           W +++   A       AR +  +MP+R+VVSW +++ GL+  G  N++  +F  M  + +
Sbjct: 150 WVSLVNVYAKCRYSAYARLVLAKMPDRDVVSWTALIQGLVAEGFANDSIYLFQEMQNEGI 209

Query: 136 ISWNAMIAGYVECCMMGEAIVLFEEMEER--------NVVTWTSMISGYCRAGEVEEGYC 187
           +     +A  ++ C +  A+ L ++M  +        ++   ++++  Y + GE+E    
Sbjct: 210 MPNEFTLATGLKACSLCMALDLGKQMHAQAFKLGLLLDLFVGSALVDLYAKCGEIELASK 269

Query: 188 LFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIR 247
           +F  MP +N V+W  ++ G+A  G     L LF  M  +      CN  +  +++ G   
Sbjct: 270 MFIGMPEQNDVTWNVLLNGYAQRGDVTGVLKLFCSMMEL---DVKCNEFTLTTVLKGCAN 326

Query: 248 FGRLEEAQNLFDTVPVR-----DEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTA 302
              L++ Q +  ++ ++     +E     ++D Y   G   +A  +F  +   D V W+A
Sbjct: 327 SKNLKQGQ-VIHSLIIKCGYEGNEFIGCGLVDMYSKCGLAIDAIGVFKTIKKPDIVVWSA 385

Query: 303 MISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTE 362
           +I+ L Q     E+  LF  MR     P   T   L  AA  T N+  G+ IH  + K  
Sbjct: 386 LITCLDQQGQSEESIKLFHLMRLGDTLPNQYTICSLLSAATNTGNLQYGQSIHACVWKYG 445

Query: 363 SESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFE 422
            E+D+ + N L++MY K G + +   ++ +MV RDL+SWN+ + G    G+ +  L +F 
Sbjct: 446 FETDVAVSNALVTMYMKNGCVHDGTKLYESMVDRDLISWNAYLSGLHDCGMYDRPLTIFY 505

Query: 423 SMLESGTHPNSVTFLGILSACS 444
            MLE G  PN  TF+ IL +CS
Sbjct: 506 HMLEEGFIPNMYTFISILGSCS 527



 Score =  162 bits (409), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 140/602 (23%), Positives = 262/602 (43%), Gaps = 75/602 (12%)

Query: 16  SSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVS 75
           S +  Y+K  +   A+ +   MP R+VVS+ A++ G +  G  +++  LF+EM    ++ 
Sbjct: 152 SLVNVYAKCRYSAYARLVLAKMPDRDVVSWTALIQGLVAEGFANDSIYLFQEMQNEGIMP 211

Query: 76  WTAMICGLADAGRVCEARKLFEEMPER--------NVVSWNSMVVGLIRNGELNEARKVF 127
               +     A  +C A  L ++M  +        ++   +++V    + GE+  A K+F
Sbjct: 212 NEFTLATGLKACSLCMALDLGKQMHAQAFKLGLLLDLFVGSALVDLYAKCGEIELASKMF 271

Query: 128 NSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNV----VTWTSMISG-------- 175
             MP +N ++WN ++ GY +   +   + LF  M E +V     T T+++ G        
Sbjct: 272 IGMPEQNDVTWNVLLNGYAQRGDVTGVLKLFCSMMELDVKCNEFTLTTVLKGCANSKNLK 331

Query: 176 ---------------------------YCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFA 208
                                      Y + G   +   +F+ + + ++V W+A+I    
Sbjct: 332 QGQVIHSLIIKCGYEGNEFIGCGLVDMYSKCGLAIDAIGVFKTIKKPDIVVWSALITCLD 391

Query: 209 WNGFHKESLLLFIEMKGICDNGNNC-NVQSCNSMINGYIRFGRLEEAQNL--------FD 259
             G  +ES+ LF  M+     G+   N  +  S+++     G L+  Q++        F+
Sbjct: 392 QQGQSEESIKLFHLMRL----GDTLPNQYTICSLLSAATNTGNLQYGQSIHACVWKYGFE 447

Query: 260 TVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYL 319
           T    D     +++  Y+  G V +   L+ +M DRD ++W A +SGL    ++     +
Sbjct: 448 T----DVAVSNALVTMYMKNGCVHDGTKLYESMVDRDLISWNAYLSGLHDCGMYDRPLTI 503

Query: 320 FMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAK 379
           F  M   G  P   TF  + G+     ++  GRQ+H  ++K + + +  +   LI MYAK
Sbjct: 504 FYHMLEEGFIPNMYTFISILGSCSCLFDVHYGRQVHAHIIKNQLDDNNFVCTALIDMYAK 563

Query: 380 CGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGI 439
           C  +++A   F+ +  RDL +W  ++  ++      + L  F  M + G  PN  T  G 
Sbjct: 564 CMYLEDADVAFNRLSVRDLFTWTVIITNYAQTNQGEKALNYFRQMQQEGVKPNEFTLAGC 623

Query: 440 LSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYV--SMINLLGRAGKIKEAEEFVLRLPF 497
           LS CS    +  G +L + +F    +    + +V  +++++  + G ++EAE     L  
Sbjct: 624 LSGCSSLASLEGGQQLHSMVFKSGHV---SDMFVGSALVDMYAKCGCMEEAEALFEAL-I 679

Query: 498 EPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRH--VEE 555
             D   W  ++  CG+ +         A R++ LD   +P  V    I +A      VEE
Sbjct: 680 RRDTIAWNTII--CGYAQNGQGNKALTAFRMM-LDEGISPDGVTFTGILSACSHQGLVEE 736

Query: 556 HK 557
            K
Sbjct: 737 GK 738



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 76/288 (26%), Positives = 138/288 (47%), Gaps = 7/288 (2%)

Query: 169 WTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMK--GI 226
           W S+++ Y +         +  +MP ++VVSWTA+I G    GF  +S+ LF EM+  GI
Sbjct: 150 WVSLVNVYAKCRYSAYARLVLAKMPDRDVVSWTALIQGLVAEGFANDSIYLFQEMQNEGI 209

Query: 227 CDNGNN--CNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSN 284
             N       +++C+  +   +  G+   AQ  F    + D    ++++D Y   G++  
Sbjct: 210 MPNEFTLATGLKACSLCMA--LDLGKQMHAQ-AFKLGLLLDLFVGSALVDLYAKCGEIEL 266

Query: 285 AYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGA 344
           A  +F  MP+++ V W  +++G  Q         LF  M    V     T + +      
Sbjct: 267 ASKMFIGMPEQNDVTWNVLLNGYAQRGDVTGVLKLFCSMMELDVKCNEFTLTTVLKGCAN 326

Query: 345 TANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSM 404
           + N+  G+ IH +++K   E +  +   L+ MY+KCG+  +A  +F  +   D+V W+++
Sbjct: 327 SKNLKQGQVIHSLIIKCGYEGNEFIGCGLVDMYSKCGLAIDAIGVFKTIKKPDIVVWSAL 386

Query: 405 VMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRG 452
           +      G + E++K+F  M    T PN  T   +LSA ++ G +  G
Sbjct: 387 ITCLDQQGQSEESIKLFHLMRLGDTLPNQYTICSLLSAATNTGNLQYG 434



 Score =  117 bits (292), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 81/291 (27%), Positives = 142/291 (48%), Gaps = 17/291 (5%)

Query: 265 DEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMR 324
           D   W S+++ Y      + A  +   MPDRD V+WTA+I GLV      ++ YLF EM+
Sbjct: 146 DSHLWVSLVNVYAKCRYSAYARLVLAKMPDRDVVSWTALIQGLVAEGFANDSIYLFQEMQ 205

Query: 325 AHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVID 384
             G+ P   T +    A      +DLG+Q+H    K     DL + + L+ +YAKCG I+
Sbjct: 206 NEGIMPNEFTLATGLKACSLCMALDLGKQMHAQAFKLGLLLDLFVGSALVDLYAKCGEIE 265

Query: 385 NAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACS 444
            A  +F  M  ++ V+WN ++ G++  G     LK+F SM+E     N  T   +L  C+
Sbjct: 266 LASKMFIGMPEQNDVTWNVLLNGYAQRGDVTGVLKLFCSMMELDVKCNEFTLTTVLKGCA 325

Query: 445 HAGLVSRGWELFNAMFDVYKIQPGPE--HYV--SMINLLGRAGKIKEAEEFVLRLPFEPD 500
           ++  + +G  + + +     I+ G E   ++   ++++  + G   +A   V +   +PD
Sbjct: 326 NSKNLKQGQVIHSLI-----IKCGYEGNEFIGCGLVDMYSKCGLAIDAIG-VFKTIKKPD 379

Query: 501 HRIWGALLGACGFCEGNAEIAEHAAKRLLELDPL--NAPAHVVLCNIYAAS 549
             +W AL+  C   +G +E     + +L  L  L    P    +C++ +A+
Sbjct: 380 IVVWSALI-TCLDQQGQSE----ESIKLFHLMRLGDTLPNQYTICSLLSAA 425



 Score = 68.6 bits (166), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 45/176 (25%), Positives = 86/176 (48%), Gaps = 6/176 (3%)

Query: 335 FSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMV 394
           +S +     +  ++ + + IH +++K     D  L   L+++YAKC     A  + + M 
Sbjct: 115 YSSMLRECASKRSLGVAKAIHGLIVKDVINPDSHLWVSLVNVYAKCRYSAYARLVLAKMP 174

Query: 395 SRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWE 454
            RD+VSW +++ G    G AN+++ +F+ M   G  PN  T    L ACS    +  G +
Sbjct: 175 DRDVVSWTALIQGLVAEGFANDSIYLFQEMQNEGIMPNEFTLATGLKACSLCMALDLGKQ 234

Query: 455 LFNAMFDVYKIQPGPEHYV--SMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALL 508
           +    F   K+    + +V  ++++L  + G+I+ A +  + +P E +   W  LL
Sbjct: 235 MHAQAF---KLGLLLDLFVGSALVDLYAKCGEIELASKMFIGMP-EQNDVTWNVLL 286



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 71/341 (20%), Positives = 141/341 (41%), Gaps = 58/341 (17%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPER----NV 73
           +T Y K G + +   L++ M  R+++S+NA LSG    G       +F  M E     N+
Sbjct: 457 VTMYMKNGCVHDGTKLYESMVDRDLISWNAYLSGLHDCGMYDRPLTIFYHMLEEGFIPNM 516

Query: 74  VSWTAMI--CG-LADA--GRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFN 128
            ++ +++  C  L D   GR   A  +  ++ + N V   +++    +   L +A   FN
Sbjct: 517 YTFISILGSCSCLFDVHYGRQVHAHIIKNQLDDNNFVC-TALIDMYAKCMYLEDADVAFN 575

Query: 129 SMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNV----VTWTSMISG--------- 175
            + ++++ +W  +I  Y +     +A+  F +M++  V     T    +SG         
Sbjct: 576 RLSVRDLFTWTVIITNYAQTNQGEKALNYFRQMQQEGVKPNEFTLAGCLSGCSSLASLEG 635

Query: 176 --------------------------YCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAW 209
                                     Y + G +EE   LF  + R++ ++W  +I G+A 
Sbjct: 636 GQQLHSMVFKSGHVSDMFVGSALVDMYAKCGCMEEAEALFEALIRRDTIAWNTIICGYAQ 695

Query: 210 NGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISW 269
           NG   ++L  F   + + D G + +  +   +++     G +EE +  F+++     IS 
Sbjct: 696 NGQGNKALTAF---RMMLDEGISPDGVTFTGILSACSHQGLVEEGKEHFNSMYRDFGISP 752

Query: 270 T-----SMIDGYLSVGQVSNAYYLFHNMP-DRDAVAWTAMI 304
           T      M+D    VG+          M   ++A+ W  ++
Sbjct: 753 TVDHCACMVDILGRVGKFDELEDFIQKMQLSQNALIWETVL 793


>gi|147790745|emb|CAN61464.1| hypothetical protein VITISV_005683 [Vitis vinifera]
          Length = 785

 Score =  291 bits (746), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 191/622 (30%), Positives = 307/622 (49%), Gaps = 58/622 (9%)

Query: 30  AKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEM------PERNVVSWTAMIC-- 81
           A+ LF  +P  +V+ +N ++  +  NG    A  L+  M      P +    +    C  
Sbjct: 62  ARRLFDEIPNPSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSG 121

Query: 82  --GLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWN 139
              + D   +    K+F    E +V    ++V    + G L EA+++F+SM  ++V++WN
Sbjct: 122 LLAIEDGVEIHSHAKMFG--LESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWN 179

Query: 140 AMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRA---------GEVEEGYC--- 187
           AMIAG     +  +A+ L  +M+E  +   +S I G             G+   GYC   
Sbjct: 180 AMIAGCSLYGLCDDAVQLIMQMQEEGICPNSSTIVGVLPTVGEAKALGHGKALHGYCVRR 239

Query: 188 ---------------------------LFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLF 220
                                      +F  M  +N VSW+AMIGG+  +   KE+L LF
Sbjct: 240 SFDNGVVVGTGLLDMYAKCQCLLYARKIFDVMGVRNEVSWSAMIGGYVXSDCMKEALELF 299

Query: 221 IEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTV----PVRDEISWTSMIDGY 276
            +M  I  +  +    +  S++    +   L   + L   +     V D +   +++  Y
Sbjct: 300 DQM--ILKDAMDPTPVTLGSVLRACAKLTDLSRGRKLHCYIIKLGXVLDILLGNTLLSMY 357

Query: 277 LSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFS 336
              G + +A   F  M  +D+V+++A++SG VQN     A  +F  M+  G+ P   T  
Sbjct: 358 AKCGVIDDAIRFFDXMNPKDSVSFSAIVSGCVQNGNAAVALSIFRMMQLSGIDPDLTTML 417

Query: 337 VLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSR 396
            +  A    A +  G   H  L+     +D ++ N LI MY+KCG I  A  +F+ M   
Sbjct: 418 GVLPACSHLAALQHGFCSHGYLIVRGFATDTLICNALIDMYSKCGKISFAREVFNRMDRH 477

Query: 397 DLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELF 456
           D+VSWN+M++G+  HGL  E L +F  +L  G  P+ +TF+ +LS+CSH+GLV  G   F
Sbjct: 478 DIVSWNAMIIGYGIHGLGMEALGLFHDLLALGLKPDDITFICLLSSCSHSGLVMEGRLWF 537

Query: 457 NAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEG 516
           +AM   + I P  EH + M+++LGRAG I EA  F+  +PFEPD RIW ALL AC     
Sbjct: 538 DAMSRDFSIVPRMEHCICMVDILGRAGLIDEAHHFIRNMPFEPDVRIWSALLSACRI-HK 596

Query: 517 NAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWL 576
           N E+ E  +K++  L P +    V+L NIY+A+GR  +   +R+     G++K+PGCSW+
Sbjct: 597 NIELGEEVSKKIQSLGPESTGNFVLLSNIYSAAGRWDDAAHIRITQKDWGLKKIPGCSWI 656

Query: 577 MRNGGIQMFLSGDKIPAQVAEI 598
             NG +  F+ GD+   Q+++I
Sbjct: 657 EINGIVHAFVGGDQSHLQLSQI 678



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 134/518 (25%), Positives = 230/518 (44%), Gaps = 78/518 (15%)

Query: 37  MPQRNVV--SYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLA----DAGRVC 90
           MP R  V  +Y  +L   +Q+  L+EA+++ +   +    + ++++  L        +V 
Sbjct: 1   MPLRXEVKNNYLHLLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVV 60

Query: 91  EARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCM 150
            AR+LF+E+P  +V+ WN ++     NG  + A  +++SM    V          ++ C 
Sbjct: 61  LARRLFDEIPNPSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACS 120

Query: 151 MGEAIVLFEEME--------ERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTA 202
              AI    E+         E +V   T+++  Y + G + E   LF  M  ++VV+W A
Sbjct: 121 GLLAIEDGVEIHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNA 180

Query: 203 MIGGFAWNGFHKESLLLFIEMK--GICDNGNN-----------------------CNVQS 237
           MI G +  G   +++ L ++M+  GIC N +                        C  +S
Sbjct: 181 MIAGCSLYGLCDDAVQLIMQMQEEGICPNSSTIVGVLPTVGEAKALGHGKALHGYCVRRS 240

Query: 238 CNS-------MINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFH 290
            ++       +++ Y +   L  A+ +FD + VR+E+SW++MI GY+    +  A  LF 
Sbjct: 241 FDNGVVVGTGLLDMYAKCQCLLYARKIFDVMGVRNEVSWSAMIGGYVXSDCMKEALELFD 300

Query: 291 NMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDL 350
            M  +DA                              + P   T   +  A     ++  
Sbjct: 301 QMILKDA------------------------------MDPTPVTLGSVLRACAKLTDLSR 330

Query: 351 GRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSH 410
           GR++HC ++K     D++L N L+SMYAKCGVID+A   F  M  +D VS++++V G   
Sbjct: 331 GRKLHCYIIKLGXVLDILLGNTLLSMYAKCGVIDDAIRFFDXMNPKDSVSFSAIVSGCVQ 390

Query: 411 HGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPE 470
           +G A   L +F  M  SG  P+  T LG+L ACSH   +  G+   +    V        
Sbjct: 391 NGNAAVALSIFRMMQLSGIDPDLTTMLGVLPACSHLAALQHGF-CSHGYLIVRGFATDTL 449

Query: 471 HYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALL 508
              ++I++  + GKI  A E   R+    D   W A++
Sbjct: 450 ICNALIDMYSKCGKISFAREVFNRMD-RHDIVSWNAMI 486



 Score =  119 bits (298), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 123/508 (24%), Positives = 220/508 (43%), Gaps = 75/508 (14%)

Query: 15  TSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVV 74
           T+ +  Y+K G + EA+ LF  M  R+VV++NAM++G    G   +A +L  +M E  + 
Sbjct: 148 TALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSLYGLCDDAVQLIMQMQEEGIC 207

Query: 75  SWTAMICG----LADAGRVCEARKLFEEMPERNVVSWNSMVVGLI----RNGELNEARKV 126
             ++ I G    + +A  +   + L      R+  +   +  GL+    +   L  ARK+
Sbjct: 208 PNSSTIVGVLPTVGEAKALGHGKALHGYCVRRSFDNGVVVGTGLLDMYAKCQCLLYARKI 267

Query: 127 FNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWT---------------- 170
           F+ M ++N +SW+AMI GYV    M EA+ LF++M  ++ +  T                
Sbjct: 268 FDVMGVRNEVSWSAMIGGYVXSDCMKEALELFDQMILKDAMDPTPVTLGSVLRACAKLTD 327

Query: 171 ------------------------SMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGG 206
                                   +++S Y + G +++    F  M  K+ VS++A++ G
Sbjct: 328 LSRGRKLHCYIIKLGXVLDILLGNTLLSMYAKCGVIDDAIRFFDXMNPKDSVSFSAIVSG 387

Query: 207 FAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVR-- 264
              NG    +L +F  M+    +G + ++ +   ++        L+        + VR  
Sbjct: 388 CVQNGNAAVALSIFRMMQL---SGIDPDLTTMLGVLPACSHLAALQHGFCSHGYLIVRGF 444

Query: 265 --DEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFME 322
             D +   ++ID Y   G++S A  +F+ M   D V+W AMI G   + L +EA  LF +
Sbjct: 445 ATDTLICNALIDMYSKCGKISFAREVFNRMDRHDIVSWNAMIIGYGIHGLGMEALGLFHD 504

Query: 323 MRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILEN-----CLISMY 377
           + A G+ P + TF  L  +   +  +  GR    +     S    I+       C++ + 
Sbjct: 505 LLALGLKPDDITFICLLSSCSHSGLVMEGR----LWFDAMSRDFSIVPRMEHCICMVDIL 560

Query: 378 AKCGVIDNAYNIFSNM-VSRDLVSWNSMVMGFSHHG---LANETLKVFESMLESGTHPNS 433
            + G+ID A++   NM    D+  W++++     H    L  E  K  +S+    T  N 
Sbjct: 561 GRAGLIDEAHHFIRNMPFEPDVRIWSALLSACRIHKNIELGEEVSKKIQSLGPEST-GNF 619

Query: 434 VTFLGILSA------CSHAGLVSRGWEL 455
           V    I SA       +H  +  + W L
Sbjct: 620 VLLSNIYSAAGRWDDAAHIRITQKDWGL 647



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 80/351 (22%), Positives = 149/351 (42%), Gaps = 59/351 (16%)

Query: 11  VVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPE 70
           VV  T  +  Y+K   +  A+ +F +M  RN VS++AM+ G++ +  + EA  LF++M  
Sbjct: 245 VVVGTGLLDMYAKCQCLLYARKIFDVMGVRNEVSWSAMIGGYVXSDCMKEALELFDQMIL 304

Query: 71  RNVVSWTAMICG----------------------------------------LADAGRVC 90
           ++ +  T +  G                                         A  G + 
Sbjct: 305 KDAMDPTPVTLGSVLRACAKLTDLSRGRKLHCYIIKLGXVLDILLGNTLLSMYAKCGVID 364

Query: 91  EARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCM 150
           +A + F+ M  ++ VS++++V G ++NG    A  +F  M +  +      + G +  C 
Sbjct: 365 DAIRFFDXMNPKDSVSFSAIVSGCVQNGNAAVALSIFRMMQLSGIDPDLTTMLGVLPACS 424

Query: 151 MGEAI--------VLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTA 202
              A+         L       + +   ++I  Y + G++     +F RM R ++VSW A
Sbjct: 425 HLAALQHGFCSHGYLIVRGFATDTLICNALIDMYSKCGKISFAREVFNRMDRHDIVSWNA 484

Query: 203 MIGGFAWNGFHKESLLLFIEMKGICDNGNN----CNVQSCNSMINGYIRFGRL--EEAQN 256
           MI G+  +G   E+L LF ++  +    ++    C + SC+   +G +  GRL  +    
Sbjct: 485 MIIGYGIHGLGMEALGLFHDLLALGLKPDDITFICLLSSCSH--SGLVMEGRLWFDAMSR 542

Query: 257 LFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMP-DRDAVAWTAMISG 306
            F  VP  +      M+D     G +  A++   NMP + D   W+A++S 
Sbjct: 543 DFSIVPRMEHC--ICMVDILGRAGLIDEAHHFIRNMPFEPDVRIWSALLSA 591



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/189 (21%), Positives = 87/189 (46%), Gaps = 11/189 (5%)

Query: 338 LFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRD 397
           L  A   + ++   ++IH   +K  S +D  + + L  +Y  C  +  A  +F  + +  
Sbjct: 14  LLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFDEIPNPS 73

Query: 398 LVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFN 457
           ++ WN ++  ++ +G  +  + ++ SML  G  PN  T+  +L ACS    +  G E+ +
Sbjct: 74  VILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGVEI-H 132

Query: 458 AMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHR---IWGALLGAC--- 511
           +   ++ ++       ++++   + G + EA+    RL     HR    W A++  C   
Sbjct: 133 SHAKMFGLESDVFVCTALVDFYAKCGILVEAQ----RLFSSMSHRDVVAWNAMIAGCSLY 188

Query: 512 GFCEGNAEI 520
           G C+   ++
Sbjct: 189 GLCDDAVQL 197


>gi|147770957|emb|CAN76247.1| hypothetical protein VITISV_023383 [Vitis vinifera]
          Length = 820

 Score =  291 bits (746), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 178/573 (31%), Positives = 305/573 (53%), Gaps = 25/573 (4%)

Query: 46  NAMLSGFLQNGRLSEARRLFEEMPERNVVS----WTAMICGLADAGRVCEARKLFEEMPE 101
           N +L+  +Q   L  A ++  ++   N  S    +  +I   A  G + +A  LF     
Sbjct: 146 NHLLNTAIQTRSLKHATQIHTQIIINNYTSLPFLFNNLINLYAKCGCLNQALLLFSITHH 205

Query: 102 --RNVVSWNSMVVGLIRNGELNEARKVFNSM----PIKNVISWNAMIAGYVECCMM--GE 153
             + +V+W S++  L       +A  +FN M    P  N  +++++++      M+  G+
Sbjct: 206 HFKTIVTWTSLITHLSHFNMHLQALSLFNQMRCSGPYPNQFTFSSILSASAATMMVLHGQ 265

Query: 154 AI--VLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNG 211
            +  ++ +   + N+   T+++  Y +  ++     +F +MP +N+VSW +MI GF  N 
Sbjct: 266 QLHSLIHKHGFDANIFVGTALVDMYAKCADMHSAVRVFDQMPERNLVSWNSMIVGFFHNN 325

Query: 212 FHKESLLLFIEM---KGICDNGNNCN--VQSCNSMINGYIRFGRLEEAQNL-FDTVPVRD 265
            +  ++ +F ++   K +  N  + +  + +C +M  G + FGR      + +  VP+  
Sbjct: 326 LYDRAVGVFKDVLREKTVIPNEVSVSSVLSACANM--GGLNFGRQVHGVVVKYGLVPLTY 383

Query: 266 EISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRA 325
            ++  S++D Y           LF  + DRD V W  ++ G VQN+ F EA   F  MR 
Sbjct: 384 VMN--SLMDMYFKCRFFDEGVKLFQCVGDRDVVTWNVLVMGFVQNDKFEEACNYFWVMRR 441

Query: 326 HGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDN 385
            G+ P  A+FS +  ++ + A +  G  IH  ++K     ++ +   LI+MYAKCG + +
Sbjct: 442 EGILPDEASFSTVLHSSASLAALHQGTAIHDQIIKLGYVKNMCILGSLITMYAKCGSLVD 501

Query: 386 AYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSH 445
           AY +F  +   +++SW +M+  +  HG AN+ +++FE ML  G  P+ VTF+ +LSACSH
Sbjct: 502 AYQVFEGIEDHNVISWTAMISAYQLHGCANQVIELFEHMLSEGIEPSHVTFVCVLSACSH 561

Query: 446 AGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWG 505
            G V  G   FN+M  ++ + PGPEHY  M++LLGRAG + EA+ F+  +P +P   +WG
Sbjct: 562 TGRVEEGLAHFNSMKKIHDMNPGPEHYACMVDLLGRAGWLDEAKRFIESMPMKPTPSVWG 621

Query: 506 ALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLK 565
           ALLGAC    GN ++   AA+RL E++P N   +V+L N+   SGR  E +++R  MG+ 
Sbjct: 622 ALLGACR-KYGNLKMGREAAERLFEMEPYNPGNYVLLANMCTRSGRLEEANEVRRLMGVN 680

Query: 566 GVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
           GVRK PGCSW+       +F + D+  +   EI
Sbjct: 681 GVRKEPGCSWIDVKNMTFVFTAHDRSHSSSDEI 713



 Score = 85.5 bits (210), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 82/352 (23%), Positives = 149/352 (42%), Gaps = 86/352 (24%)

Query: 15  TSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEE-MPERNV 73
           T+ +  Y+K   +  A  +F  MP+RN+VS+N+M+ GF  N     A  +F++ + E+ V
Sbjct: 284 TALVDMYAKCADMHSAVRVFDQMPERNLVSWNSMIVGFFHNNLYDRAVGVFKDVLREKTV 343

Query: 74  ----VSWTAMICGLADAGRV-------------------------------C----EARK 94
               VS ++++   A+ G +                               C    E  K
Sbjct: 344 IPNEVSVSSVLSACANMGGLNFGRQVHGVVVKYGLVPLTYVMNSLMDMYFKCRFFDEGVK 403

Query: 95  LFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMP----------------------- 131
           LF+ + +R+VV+WN +V+G ++N +  EA   F  M                        
Sbjct: 404 LFQCVGDRDVVTWNVLVMGFVQNDKFEEACNYFWVMRREGILPDEASFSTVLHSSASLAA 463

Query: 132 ----------------IKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISG 175
                           +KN+    ++I  Y +C  + +A  +FE +E+ NV++WT+MIS 
Sbjct: 464 LHQGTAIHDQIIKLGYVKNMCILGSLITMYAKCGSLVDAYQVFEGIEDHNVISWTAMISA 523

Query: 176 YCRAGEVEEGYCLFRRMPRKNV----VSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGN 231
           Y   G   +   LF  M  + +    V++  ++   +  G  +E L  F  MK I D   
Sbjct: 524 YQLHGCANQVIELFEHMLSEGIEPSHVTFVCVLSACSHTGRVEEGLAHFNSMKKIHDMNP 583

Query: 232 NCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEIS-WTSMIDGYLSVGQV 282
                +C  M++   R G L+EA+   +++P++   S W +++      G +
Sbjct: 584 GPEHYAC--MVDLLGRAGWLDEAKRFIESMPMKPTPSVWGALLGACRKYGNL 633



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 54/193 (27%), Positives = 92/193 (47%), Gaps = 12/193 (6%)

Query: 14  LTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNV 73
           + S +  Y K  F DE   LFQ +  R+VV++N ++ GF+QN +  EA   F  M    +
Sbjct: 385 MNSLMDMYFKCRFFDEGVKLFQCVGDRDVVTWNVLVMGFVQNDKFEEACNYFWVMRREGI 444

Query: 74  V----SWTAMICGLADAGRVCEARKLFEEMPE----RNVVSWNSMVVGLIRNGELNEARK 125
           +    S++ ++   A    + +   + +++ +    +N+    S++    + G L +A +
Sbjct: 445 LPDEASFSTVLHSSASLAALHQGTAIHDQIIKLGYVKNMCILGSLITMYAKCGSLVDAYQ 504

Query: 126 VFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNV----VTWTSMISGYCRAGE 181
           VF  +   NVISW AMI+ Y       + I LFE M    +    VT+  ++S     G 
Sbjct: 505 VFEGIEDHNVISWTAMISAYQLHGCANQVIELFEHMLSEGIEPSHVTFVCVLSACSHTGR 564

Query: 182 VEEGYCLFRRMPR 194
           VEEG   F  M +
Sbjct: 565 VEEGLAHFNSMKK 577


>gi|357518009|ref|XP_003629293.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355523315|gb|AET03769.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 672

 Score =  291 bits (746), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 180/632 (28%), Positives = 305/632 (48%), Gaps = 77/632 (12%)

Query: 21  YSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMI 80
           YS+RG + +A  LF  MPQ N  S+N ++   +  G  +++  LF  MP +   SW  ++
Sbjct: 40  YSRRGSLHDASKLFDEMPQPNPFSWNTLIEAHINLGHRNKSLELFHAMPHKTHYSWNLIV 99

Query: 81  CGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSM---PIKNV-- 135
             L+ +G + +A+ LF  MP +N + WNSM+ G  R+G    +  +F  M   P++ V  
Sbjct: 100 STLSKSGDLQQAQALFNAMPMKNPLVWNSMIHGYSRHGYPRNSLLLFKEMNLDPLETVHR 159

Query: 136 ---------------------------------------ISWNAMIAGYVECCMMGEAIV 156
                                                  +  ++++  Y +C  +  A  
Sbjct: 160 DAFVLSTVFGACADLFALDCGKQVHARVFIDGFEFEQDKVLCSSIVNFYGKCGDLDSAAR 219

Query: 157 LFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKES 216
           +   ++E +  + ++++SGY  AG + +   +F        V W ++I G+  NG   E+
Sbjct: 220 VVGFVKEVDDFSLSALVSGYANAGRMSDARKVFDNKVDPCSVLWNSIISGYVSNGEEMEA 279

Query: 217 LLLFIEM----------------------------KGICDN----GNNCNVQSCNSMING 244
           L LF +M                            K + D+    G   ++   +++++ 
Sbjct: 280 LALFNKMRRNGVWGDFSAVANILSISSSLLNVELVKQMHDHAFKIGATHDIVVASTLLDA 339

Query: 245 YIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMI 304
           Y +     ++  LF  + V D I   +MI  Y + G+V +A  +F++MP++  ++W +++
Sbjct: 340 YSKCQHPHDSCKLFHELKVYDAILLNTMITVYCNCGRVEDAKEVFNSMPNKTLISWNSIL 399

Query: 305 SGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESE 364
            GL QN    EA   F  M    V     +F+ +  A    ++++LG Q+    +    E
Sbjct: 400 VGLTQNACPSEALDTFSMMNKLDVKMDKFSFASVISACAIKSSLELGEQLFGKAITLGLE 459

Query: 365 SDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESM 424
           SD I+   L+  Y KCG+++    +F  M+  D VSWN+M+MG++ +G   E L +F  M
Sbjct: 460 SDQIICTSLVDFYCKCGLVEMGRKVFDGMIKTDEVSWNTMLMGYATNGYGIEALTLFNEM 519

Query: 425 LESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGK 484
             SG  P+++TF GILSAC H GLV  G +LF  M   Y I PG EHY  M++L  R G 
Sbjct: 520 GYSGVRPSAITFTGILSACDHCGLVEEGRDLFRTMKHDYDINPGIEHYSCMVDLFARVGC 579

Query: 485 IKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCN 544
             EA   +  +PF+ D  +W ++L  C    GN  I + AA+++++LDP N+ A++ L N
Sbjct: 580 FGEAMYLIEEMPFQADANMWLSVLRGC-VSHGNKTIGKMAAEKIIQLDPGNSGAYIQLSN 638

Query: 545 IYAASGRHVEEHKLRMDMGLKGVRKVPGCSWL 576
           I A S       ++R  M  K V+K+PGCSW+
Sbjct: 639 ILATSEDWEGSAEVRELMRNKNVQKIPGCSWM 670



 Score =  179 bits (453), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 119/456 (26%), Positives = 218/456 (47%), Gaps = 70/456 (15%)

Query: 39  QRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEE 98
             +V++ N +L  + + G L +A +LF+EMP+ N  SW  +I    + G   ++ +LF  
Sbjct: 27  HSSVITTNRLLQLYSRRGSLHDASKLFDEMPQPNPFSWNTLIEAHINLGHRNKSLELFHA 86

Query: 99  MPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLF 158
           MP +   SWN +V  L ++G+L +A+ +FN+MP+KN + WN+MI GY        +++LF
Sbjct: 87  MPHKTHYSWNLIVSTLSKSGDLQQAQALFNAMPMKNPLVWNSMIHGYSRHGYPRNSLLLF 146

Query: 159 EEME-------ERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNG 211
           +EM         R+    +++         ++ G  +  R+           I GF    
Sbjct: 147 KEMNLDPLETVHRDAFVLSTVFGACADLFALDCGKQVHARV----------FIDGFE--- 193

Query: 212 FHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTS 271
           F ++ +L                   C+S++N Y + G L+ A  +   V   D+ S ++
Sbjct: 194 FEQDKVL-------------------CSSIVNFYGKCGDLDSAARVVGFVKEVDDFSLSA 234

Query: 272 MIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPL 331
           ++ GY + G++S+A  +F N  D  +V W ++ISG V N   +EA  LF +MR +GV   
Sbjct: 235 LVSGYANAGRMSDARKVFDNKVDPCSVLWNSIISGYVSNGEEMEALALFNKMRRNGVWGD 294

Query: 332 NATFSVLFGAAGATANIDLGRQIH-------------------------------CVLMK 360
            +  + +   + +  N++L +Q+H                               C L  
Sbjct: 295 FSAVANILSISSSLLNVELVKQMHDHAFKIGATHDIVVASTLLDAYSKCQHPHDSCKLFH 354

Query: 361 TESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKV 420
                D IL N +I++Y  CG +++A  +F++M ++ L+SWNS+++G + +   +E L  
Sbjct: 355 ELKVYDAILLNTMITVYCNCGRVEDAKEVFNSMPNKTLISWNSILVGLTQNACPSEALDT 414

Query: 421 FESMLESGTHPNSVTFLGILSACSHAGLVSRGWELF 456
           F  M +     +  +F  ++SAC+    +  G +LF
Sbjct: 415 FSMMNKLDVKMDKFSFASVISACAIKSSLELGEQLF 450



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 41/142 (28%), Positives = 64/142 (45%), Gaps = 10/142 (7%)

Query: 15  TSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNV- 73
           TS +  Y K G ++  + +F  M + + VS+N ML G+  NG   EA  LF EM    V 
Sbjct: 466 TSLVDFYCKCGLVEMGRKVFDGMIKTDEVSWNTMLMGYATNGYGIEALTLFNEMGYSGVR 525

Query: 74  ---VSWTAMICGLADAGRVCEARKLFEEMPER-----NVVSWNSMVVGLIRNGELNEARK 125
              +++T ++      G V E R LF  M         +  ++ MV    R G   EA  
Sbjct: 526 PSAITFTGILSACDHCGLVEEGRDLFRTMKHDYDINPGIEHYSCMVDLFARVGCFGEAMY 585

Query: 126 VFNSMPIK-NVISWNAMIAGYV 146
           +   MP + +   W +++ G V
Sbjct: 586 LIEEMPFQADANMWLSVLRGCV 607


>gi|147775281|emb|CAN61593.1| hypothetical protein VITISV_030555 [Vitis vinifera]
          Length = 673

 Score =  291 bits (746), Expect = 6e-76,   Method: Compositional matrix adjust.
 Identities = 171/481 (35%), Positives = 263/481 (54%), Gaps = 14/481 (2%)

Query: 125 KVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEM----EERNVVTWTSMISGYCRAG 180
           +VF+ +   NV  WN MI   +E     +AI+L+ EM       N  T+ +++     +G
Sbjct: 93  RVFDFVRKPNVFLWNCMIKVCIENNEPFKAILLYYEMVVAHSRPNKYTYPAVLKACSDSG 152

Query: 181 EVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDN-GNNCNVQSCN 239
            V EG  +   +  K+ +     I   A   +   S    +E + I D+ G   +    N
Sbjct: 153 VVAEGVQVHAHLV-KHGLGGDGHILSSAIRMY--ASFGRLVEARRILDDKGGEVDAVCWN 209

Query: 240 SMINGYIRFGRLEEAQNLFDTVPVRDEIS-WTSMIDGYLSVGQVSNAYYLFHNMPDRDAV 298
           +MI+GY+RFG +E A+ LF+ +P R  IS W +MI G+   G V  A   F  M +RD +
Sbjct: 210 AMIDGYLRFGEVEAARELFEGMPDRSMISTWNAMISGFSRCGMVEVAREFFDEMKERDEI 269

Query: 299 AWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVL 358
           +W+AMI G +Q   F+EA  +F +M+   + P       +  A      +D GR IH   
Sbjct: 270 SWSAMIDGYIQEGCFMEALEIFHQMQKEKIRPRKFVLPSVLSACANLGALDQGRWIHTYA 329

Query: 359 MKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETL 418
            +   + D +L   L+ MYAKCG ID A+ +F  M ++++ SWN+M+ G + HG A + +
Sbjct: 330 KRNSIQLDGVLGTSLVDMYAKCGRIDLAWEVFEKMSNKEVSSWNAMIGGLAMHGRAEDAI 389

Query: 419 KVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINL 478
            +F  M     +PN +TF+G+L+AC+H GLV +G  +FN+M   Y ++P  EHY  +++L
Sbjct: 390 DLFSKM---DIYPNEITFVGVLNACAHGGLVQKGLTIFNSMRKEYGVEPQIEHYGCIVDL 446

Query: 479 LGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPA 538
           LGRAG + EAE+ V  +P EP   +WGALLGAC    GN E+ E   K LLEL+P N+  
Sbjct: 447 LGRAGLLTEAEKVVSSIPTEPTPAVWGALLGACRK-HGNVELGERVGKILLELEPQNSGR 505

Query: 539 HVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWL-MRNGGIQMFLSGDKIPAQVAE 597
           + +L NIYA +GR  E  ++R  M  +G++  PG S + +  G +  F+ GD    QV +
Sbjct: 506 YTLLSNIYAKAGRWEEVGEVRKLMKERGIKTTPGTSIIDLGRGEVHKFIIGDGSHPQVKD 565

Query: 598 I 598
           I
Sbjct: 566 I 566



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 99/380 (26%), Positives = 175/380 (46%), Gaps = 50/380 (13%)

Query: 14  LTSSITKYSKRGFIDEAKALFQLMP-QRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERN 72
           L+S+I  Y+  G + EA+ +      + + V +NAM+ G+L+ G +  AR LFE MP+R+
Sbjct: 176 LSSAIRMYASFGRLVEARRILDDKGGEVDAVCWNAMIDGYLRFGEVEAARELFEGMPDRS 235

Query: 73  VVS-WTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMP 131
           ++S W AMI G +  G V  AR+ F+EM ER+ +SW++M+ G I+ G   EA ++F+ M 
Sbjct: 236 MISTWNAMISGFSRCGMVEVAREFFDEMKERDEISWSAMIDGYIQEGCFMEALEIFHQMQ 295

Query: 132 IKNVISWNAMIAGYVECCM------MGEAIVLFEEME--ERNVVTWTSMISGYCRAGEVE 183
            + +     ++   +  C        G  I  + +    + + V  TS++  Y + G ++
Sbjct: 296 KEKIRPRKFVLPSVLSACANLGALDQGRWIHTYAKRNSIQLDGVLGTSLVDMYAKCGRID 355

Query: 184 EGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMIN 243
             + +F +M  K V SW AMIGG A +G  ++++ LF +M                    
Sbjct: 356 LAWEVFEKMSNKEVSSWNAMIGGLAMHGRAEDAIDLFSKM-------------------- 395

Query: 244 GYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAM 303
                          D  P  +EI++  +++     G V     +F++M     V     
Sbjct: 396 ---------------DIYP--NEITFVGVLNACAHGGLVQKGLTIFNSMRKEYGVEPQIE 438

Query: 304 ISGLVQNELFVEATYLFMEMRAHGVP--PLNATFSVLFGAAGATANIDLGRQIHCVLMKT 361
             G + + L         E     +P  P  A +  L GA     N++LG ++  +L++ 
Sbjct: 439 HYGCIVDLLGRAGLLTEAEKVVSSIPTEPTPAVWGALLGACRKHGNVELGERVGKILLEL 498

Query: 362 ESESDLILENCLISMYAKCG 381
           E ++       L ++YAK G
Sbjct: 499 EPQNSGRY-TLLSNIYAKAG 517



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 55/203 (27%), Positives = 98/203 (48%), Gaps = 21/203 (10%)

Query: 8   KSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEE 67
           +S++    + I+ +S+ G ++ A+  F  M +R+ +S++AM+ G++Q G   EA  +F +
Sbjct: 234 RSMISTWNAMISGFSRCGMVEVAREFFDEMKERDEISWSAMIDGYIQEGCFMEALEIFHQ 293

Query: 68  M------PERNVVSWTAMIC---GLADAGRVCEARKLFEEMPERNVVSWN-----SMVVG 113
           M      P + V+      C   G  D GR            +RN +  +     S+V  
Sbjct: 294 MQKEKIRPRKFVLPSVLSACANLGALDQGR------WIHTYAKRNSIQLDGVLGTSLVDM 347

Query: 114 LIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEME-ERNVVTWTSM 172
             + G ++ A +VF  M  K V SWNAMI G        +AI LF +M+   N +T+  +
Sbjct: 348 YAKCGRIDLAWEVFEKMSNKEVSSWNAMIGGLAMHGRAEDAIDLFSKMDIYPNEITFVGV 407

Query: 173 ISGYCRAGEVEEGYCLFRRMPRK 195
           ++     G V++G  +F  M ++
Sbjct: 408 LNACAHGGLVQKGLTIFNSMRKE 430



 Score = 43.9 bits (102), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 35/170 (20%), Positives = 75/170 (44%), Gaps = 8/170 (4%)

Query: 345 TANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGV-----IDNAYNIFSNMVSRDLV 399
           T ++   +Q H ++++T    D  +   L+  YA          +++  +F  +   ++ 
Sbjct: 45  TTSLHHLKQAHALILRTGHLQDSYIAGSLVKSYANVSTNRYLSFESSLRVFDFVRKPNVF 104

Query: 400 SWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAM 459
            WN M+     +    + + ++  M+ + + PN  T+  +L ACS +G+V+ G ++   +
Sbjct: 105 LWNCMIKVCIENNEPFKAILLYYEMVVAHSRPNKYTYPAVLKACSDSGVVAEGVQVHAHL 164

Query: 460 FDVYKIQPGPEHYV-SMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALL 508
             V     G  H + S I +    G++ EA   +     E D   W A++
Sbjct: 165 --VKHGLGGDGHILSSAIRMYASFGRLVEARRILDDKGGEVDAVCWNAMI 212


>gi|255574750|ref|XP_002528283.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223532320|gb|EEF34121.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 602

 Score =  291 bits (746), Expect = 6e-76,   Method: Compositional matrix adjust.
 Identities = 158/491 (32%), Positives = 267/491 (54%), Gaps = 34/491 (6%)

Query: 134 NVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMP 193
           N    N +I  Y +C     A  +F+EM  RN+ +W  M+SGY + G+++    LF +MP
Sbjct: 85  NTFLANHLINMYSKCGDYPSAYKVFDEMSTRNLYSWNGMLSGYAKLGKIKPARKLFDKMP 144

Query: 194 RKNVVSWTAMIGGFAWNGFHKESLLLFIEMK--GICDN---------------------- 229
            K+VVSW  M+  +A +GF  ++L  + E++  GI  N                      
Sbjct: 145 EKDVVSWNTMVIAYAKSGFCNDALRFYRELRRLGIGYNEYSFAGLLNICVKVKELELSKQ 204

Query: 230 --------GNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQ 281
                   G   N+   +S+++ Y +   + +A+ LFD + +RD ++WT+M+ GY   G 
Sbjct: 205 AHGQVLVAGFLSNLVISSSVLDAYAKCSEMGDARRLFDEMIIRDVLAWTTMVSGYAQWGD 264

Query: 282 VSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGA 341
           V  A  LF  MP+++ VAWT++I+G  +++L  +A  LF +M A  + P   TFS    A
Sbjct: 265 VEAARELFDLMPEKNPVAWTSLIAGYARHDLGHKALELFTKMMALNIRPDQFTFSSCLCA 324

Query: 342 AGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSR-DLVS 400
           + + A+++ G+QIH  L++T    + I+ + LI MY+KCG ++    +F  M  + D+V 
Sbjct: 325 SASIASLNHGKQIHGYLIRTNIRPNTIVVSSLIDMYSKCGCLEVGRLVFDLMGDKWDVVL 384

Query: 401 WNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMF 460
           WN+++   + HG   E +++F+ M+  G  P+ +T + +L+ACSH+GLV  G  L+ ++ 
Sbjct: 385 WNTIISSLAQHGRGQEAIQMFDDMVRLGMKPDRITLIVLLNACSHSGLVQEGLRLYESIT 444

Query: 461 DVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEI 520
             + + P  EHY  +I+LLGRAG        + ++P +P+  IW ALLG C    GN E 
Sbjct: 445 SCHGVIPNQEHYACLIDLLGRAGHFDTLMNQLEKMPCKPNDEIWNALLGVCRM-HGNIEF 503

Query: 521 AEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNG 580
               A++++ELDP ++ A+V+L +I+AA GR      +R  M  + VRK    SW+    
Sbjct: 504 GREVAEKIIELDPQSSAAYVLLSSIHAAVGRWELVENVRQLMNERHVRKDRAISWIEIEN 563

Query: 581 GIQMFLSGDKI 591
            +  F + D++
Sbjct: 564 KVHSFTASDRL 574



 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 133/457 (29%), Positives = 218/457 (47%), Gaps = 31/457 (6%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWT 77
           I  YSK G    A  +F  M  RN+ S+N MLSG+ + G++  AR+LF++MPE++VVSW 
Sbjct: 93  INMYSKCGDYPSAYKVFDEMSTRNLYSWNGMLSGYAKLGKIKPARKLFDKMPEKDVVSWN 152

Query: 78  AMICGLADAGRVCEARKLFEEMPE----RNVVSWNSMVVGLIRNGELNEARKVFNSMPI- 132
            M+   A +G   +A + + E+       N  S+  ++   ++  EL  +++    + + 
Sbjct: 153 TMVIAYAKSGFCNDALRFYRELRRLGIGYNEYSFAGLLNICVKVKELELSKQAHGQVLVA 212

Query: 133 ---KNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLF 189
               N++  ++++  Y +C  MG+A  LF+EM  R+V+ WT+M+SGY + G+VE    LF
Sbjct: 213 GFLSNLVISSSVLDAYAKCSEMGDARRLFDEMIIRDVLAWTTMVSGYAQWGDVEAARELF 272

Query: 190 RRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFG 249
             MP KN V+WT++I G+A +    ++L LF +M  +    +     SC           
Sbjct: 273 DLMPEKNPVAWTSLIAGYARHDLGHKALELFTKMMALNIRPDQFTFSSCLCASASIASLN 332

Query: 250 RLEEAQNLFDTVPVR-DEISWTSMIDGYLSVGQVSNAYYLFHNMPDR-DAVAWTAMISGL 307
             ++         +R + I  +S+ID Y   G +     +F  M D+ D V W  +IS L
Sbjct: 333 HGKQIHGYLIRTNIRPNTIVVSSLIDMYSKCGCLEVGRLVFDLMGDKWDVVLWNTIISSL 392

Query: 308 VQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQI-------HCVLMK 360
            Q+    EA  +F +M   G+ P   T  VL  A   +  +  G ++       H V+  
Sbjct: 393 AQHGRGQEAIQMFDDMVRLGMKPDRITLIVLLNACSHSGLVQEGLRLYESITSCHGVIPN 452

Query: 361 TESESDLILENCLISMYAKCGVIDNAYNIFSNMVSR--DLVSWNSMVMGFSHHGLANETL 418
            E  +      CLI +  + G  D   N    M  +  D + WN+++     HG      
Sbjct: 453 QEHYA------CLIDLLGRAGHFDTLMNQLEKMPCKPNDEI-WNALLGVCRMHGNIEFGR 505

Query: 419 KVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWEL 455
           +V E ++E    P S     +LS+  HA  V R WEL
Sbjct: 506 EVAEKIIE--LDPQSSAAYVLLSSI-HAA-VGR-WEL 537



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 83/353 (23%), Positives = 153/353 (43%), Gaps = 59/353 (16%)

Query: 7   PKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYN-------------------- 46
           P+  VV   + +  Y+K GF ++A   ++ + +R  + YN                    
Sbjct: 144 PEKDVVSWNTMVIAYAKSGFCNDALRFYREL-RRLGIGYNEYSFAGLLNICVKVKELELS 202

Query: 47  ------AMLSGFLQN--------------GRLSEARRLFEEMPERNVVSWTAMICGLADA 86
                  +++GFL N                + +ARRLF+EM  R+V++WT M+ G A  
Sbjct: 203 KQAHGQVLVAGFLSNLVISSSVLDAYAKCSEMGDARRLFDEMIIRDVLAWTTMVSGYAQW 262

Query: 87  GRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSM------PIKNVISWNA 140
           G V  AR+LF+ MPE+N V+W S++ G  R+   ++A ++F  M      P +   S   
Sbjct: 263 GDVEAARELFDLMPEKNPVAWTSLIAGYARHDLGHKALELFTKMMALNIRPDQFTFSSCL 322

Query: 141 MIAGYVECCMMGEAI--VLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRK-NV 197
             +  +     G+ I   L       N +  +S+I  Y + G +E G  +F  M  K +V
Sbjct: 323 CASASIASLNHGKQIHGYLIRTNIRPNTIVVSSLIDMYSKCGCLEVGRLVFDLMGDKWDV 382

Query: 198 VSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNL 257
           V W  +I   A +G  +E++ +F +M  +   G   +  +   ++N     G ++E   L
Sbjct: 383 VLWNTIISSLAQHGRGQEAIQMFDDMVRL---GMKPDRITLIVLLNACSHSGLVQEGLRL 439

Query: 258 FDTVP-----VRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDR-DAVAWTAMI 304
           ++++      + ++  +  +ID     G           MP + +   W A++
Sbjct: 440 YESITSCHGVIPNQEHYACLIDLLGRAGHFDTLMNQLEKMPCKPNDEIWNALL 492


>gi|255586014|ref|XP_002533676.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223526427|gb|EEF28706.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 726

 Score =  291 bits (745), Expect = 6e-76,   Method: Compositional matrix adjust.
 Identities = 196/634 (30%), Positives = 322/634 (50%), Gaps = 73/634 (11%)

Query: 15  TSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNV- 73
           T  I+ YSK   ++ A ++F L+ + N +S+N ++   L  G ++EA  L+++M E  V 
Sbjct: 66  TKLISFYSKFNDLESAISVFSLLQEPNTLSWNLIMRTHLDFGLVTEALLLYKKMRESGVK 125

Query: 74  -------------------------VSWTAMICGL--------------ADAGRVCEARK 94
                                    V   AM  G               A  G V   R 
Sbjct: 126 TDAFTFPTINRAVMSLKSDVLLGKMVHCDAMKLGFGYDLYFCNTMIEVYARCGCVYYGRV 185

Query: 95  LFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIK---NVISWNAMIAG------- 144
           +F+EM  R++VSW SM+ G +  G +  A ++FN M ++   N ++   M+ G       
Sbjct: 186 MFDEMSPRDLVSWTSMISGYVSEGNVFSAFELFNKMRLEMEPNSVTLIVMLKGCYAYDNF 245

Query: 145 ----YVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSW 200
                + C ++   ++++  ++        S++  Y   G  +E   LF  + R++V+SW
Sbjct: 246 SEGRQLHCYIIKNGLLIYGSVQ-------NSILRMYSITGSAKEVESLFVEIYRRDVISW 298

Query: 201 TAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFD- 259
             +IG +A  G  +E +  F +M+G        + ++   +I+ + + G L E + L   
Sbjct: 299 NTLIGFYALRGDAEEMVCGFNQMRGEV----ALSSETLTLVISVFAKIGNLVEGEKLHSF 354

Query: 260 --TVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEAT 317
              V + D++   S++D Y   G++ N+  LF  +P R +  W  M+SG +QN  F EA 
Sbjct: 355 SIKVGLCDDVLLASLLDFYAKCGELRNSVQLFGEIPCRSSSTWKLMMSGCIQNGYFDEAI 414

Query: 318 YLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTES---ESDLI-LENCL 373
           +LF +M+A GV         L  A     ++ L ++IH  L +      E D I L   +
Sbjct: 415 HLFRQMQASGVQLQAQILGSLVDACSHLGSLQLCKEIHGYLTRNFFYILEGDNIHLGTSI 474

Query: 374 ISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNS 433
           ++MY +CG I +A   F+ MV++D ++W SM+ G+  HG+A E LK+F  ML     PN 
Sbjct: 475 LNMYIRCGSISSAREYFNRMVAKDNITWTSMIEGYGIHGMAIEALKLFNQMLVERVLPNR 534

Query: 434 VTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVL 493
           VTFL +LSACSH+GL+ +G ELF +M  V+ ++P  +HY  M++LLGR GKIKEA   ++
Sbjct: 535 VTFLSLLSACSHSGLIRQGCELFLSMKWVFGMEPDLDHYTCMVDLLGRCGKIKEALAMII 594

Query: 494 RLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHV 553
           R+    D RIWGAL+ +C    G+ ++ E AA+RLLE++  N   + +L NI A  G+  
Sbjct: 595 RMVVVADSRIWGALVASCR-VHGDKKVGEFAAQRLLEMESDNVGYYTLLSNIQAMVGKWD 653

Query: 554 EEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLS 587
           E  ++R  +  K +RK PG S ++  G    F+S
Sbjct: 654 EVEQVRKVIHEKDLRKTPGWSCIVGKGRNYCFIS 687



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 72/239 (30%), Positives = 114/239 (47%), Gaps = 21/239 (8%)

Query: 12  VHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPER 71
           V L S +  Y+K G +  +  LF  +P R+  ++  M+SG +QNG   EA  LF +M   
Sbjct: 364 VLLASLLDFYAKCGELRNSVQLFGEIPCRSSSTWKLMMSGCIQNGYFDEAIHLFRQMQAS 423

Query: 72  NVVSWTAMICGLADAG------RVCE------ARKLFEEMPERNVVSWNSMVVGLIRNGE 119
            V     ++  L DA       ++C+       R  F  +   N+    S++   IR G 
Sbjct: 424 GVQLQAQILGSLVDACSHLGSLQLCKEIHGYLTRNFFYILEGDNIHLGTSILNMYIRCGS 483

Query: 120 LNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEM-EER---NVVTWTSMISG 175
           ++ AR+ FN M  K+ I+W +MI GY    M  EA+ LF +M  ER   N VT+ S++S 
Sbjct: 484 ISSAREYFNRMVAKDNITWTSMIEGYGIHGMAIEALKLFNQMLVERVLPNRVTFLSLLSA 543

Query: 176 YCRAGEVEEGYCLFRRMP-----RKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDN 229
              +G + +G  LF  M        ++  +T M+      G  KE+L + I M  + D+
Sbjct: 544 CSHSGLIRQGCELFLSMKWVFGMEPDLDHYTCMVDLLGRCGKIKEALAMIIRMVVVADS 602


>gi|225464281|ref|XP_002271266.1| PREDICTED: pentatricopeptide repeat-containing protein At3g16610
           [Vitis vinifera]
          Length = 785

 Score =  291 bits (745), Expect = 6e-76,   Method: Compositional matrix adjust.
 Identities = 191/622 (30%), Positives = 307/622 (49%), Gaps = 58/622 (9%)

Query: 30  AKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEM------PERNVVSWTAMIC-- 81
           A+ LF  +P  +V+ +N ++  +  NG    A  L+  M      P +    +    C  
Sbjct: 62  ARRLFDEIPNPSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSG 121

Query: 82  --GLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWN 139
              + D   +    K+F    E +V    ++V    + G L EA+++F+SM  ++V++WN
Sbjct: 122 LLAIEDGVEIHSHAKMFG--LESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWN 179

Query: 140 AMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRA---------GEVEEGYC--- 187
           AMIAG     +  +A+ L  +M+E  +   +S I G             G+   GYC   
Sbjct: 180 AMIAGCSLYGLCDDAVQLIMQMQEEGICPNSSTIVGVLPTVGEAKALGHGKALHGYCVRR 239

Query: 188 ---------------------------LFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLF 220
                                      +F  M  +N VSW+AMIGG+  +   KE+L LF
Sbjct: 240 SFDNGVVVGTGLLDMYAKCQCLLYARKIFDVMGVRNEVSWSAMIGGYVASDCMKEALELF 299

Query: 221 IEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTV----PVRDEISWTSMIDGY 276
            +M  I  +  +    +  S++    +   L   + L   +     V D +   +++  Y
Sbjct: 300 DQM--ILKDAMDPTPVTLGSVLRACAKLTDLSRGRKLHCYIIKLGSVLDILLGNTLLSMY 357

Query: 277 LSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFS 336
              G + +A   F  M  +D+V+++A++SG VQN     A  +F  M+  G+ P   T  
Sbjct: 358 AKCGVIDDAIRFFDEMNPKDSVSFSAIVSGCVQNGNAAVALSIFRMMQLSGIDPDLTTML 417

Query: 337 VLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSR 396
            +  A    A +  G   H  L+     +D ++ N LI MY+KCG I  A  +F+ M   
Sbjct: 418 GVLPACSHLAALQHGFCSHGYLIVRGFATDTLICNALIDMYSKCGKISFAREVFNRMDRH 477

Query: 397 DLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELF 456
           D+VSWN+M++G+  HGL  E L +F  +L  G  P+ +TF+ +LS+CSH+GLV  G   F
Sbjct: 478 DIVSWNAMIIGYGIHGLGMEALGLFHDLLALGLKPDDITFICLLSSCSHSGLVMEGRLWF 537

Query: 457 NAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEG 516
           +AM   + I P  EH + M+++LGRAG I EA  F+  +PFEPD RIW ALL AC     
Sbjct: 538 DAMSRDFSIVPRMEHCICMVDILGRAGLIDEAHHFIRNMPFEPDVRIWSALLSACRI-HK 596

Query: 517 NAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWL 576
           N E+ E  +K++  L P +    V+L NIY+A+GR  +   +R+     G++K+PGCSW+
Sbjct: 597 NIELGEEVSKKIQSLGPESTGNFVLLSNIYSAAGRWDDAAHIRITQKDWGLKKIPGCSWI 656

Query: 577 MRNGGIQMFLSGDKIPAQVAEI 598
             NG +  F+ GD+   Q+++I
Sbjct: 657 EINGIVHAFVGGDQSHLQLSQI 678



 Score =  165 bits (417), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 135/518 (26%), Positives = 232/518 (44%), Gaps = 78/518 (15%)

Query: 37  MPQRNVV--SYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLA----DAGRVC 90
           MP R  V  +Y  +L   +Q+  L+EA+++ +   +    + ++++  L        +V 
Sbjct: 1   MPLRFEVKNNYLHLLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVV 60

Query: 91  EARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCM 150
            AR+LF+E+P  +V+ WN ++     NG  + A  +++SM    V          ++ C 
Sbjct: 61  LARRLFDEIPNPSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACS 120

Query: 151 MGEAIVLFEEME--------ERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTA 202
              AI    E+         E +V   T+++  Y + G + E   LF  M  ++VV+W A
Sbjct: 121 GLLAIEDGVEIHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNA 180

Query: 203 MIGGFAWNGFHKESLLLFIEMK--GICDNGNN-----------------------CNVQS 237
           MI G +  G   +++ L ++M+  GIC N +                        C  +S
Sbjct: 181 MIAGCSLYGLCDDAVQLIMQMQEEGICPNSSTIVGVLPTVGEAKALGHGKALHGYCVRRS 240

Query: 238 CNS-------MINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFH 290
            ++       +++ Y +   L  A+ +FD + VR+E+SW++MI GY++   +  A  LF 
Sbjct: 241 FDNGVVVGTGLLDMYAKCQCLLYARKIFDVMGVRNEVSWSAMIGGYVASDCMKEALELFD 300

Query: 291 NMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDL 350
            M  +DA                              + P   T   +  A     ++  
Sbjct: 301 QMILKDA------------------------------MDPTPVTLGSVLRACAKLTDLSR 330

Query: 351 GRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSH 410
           GR++HC ++K  S  D++L N L+SMYAKCGVID+A   F  M  +D VS++++V G   
Sbjct: 331 GRKLHCYIIKLGSVLDILLGNTLLSMYAKCGVIDDAIRFFDEMNPKDSVSFSAIVSGCVQ 390

Query: 411 HGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPE 470
           +G A   L +F  M  SG  P+  T LG+L ACSH   +  G+   +    V        
Sbjct: 391 NGNAAVALSIFRMMQLSGIDPDLTTMLGVLPACSHLAALQHGF-CSHGYLIVRGFATDTL 449

Query: 471 HYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALL 508
              ++I++  + GKI  A E   R+    D   W A++
Sbjct: 450 ICNALIDMYSKCGKISFAREVFNRMD-RHDIVSWNAMI 486



 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 123/508 (24%), Positives = 220/508 (43%), Gaps = 75/508 (14%)

Query: 15  TSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVV 74
           T+ +  Y+K G + EA+ LF  M  R+VV++NAM++G    G   +A +L  +M E  + 
Sbjct: 148 TALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSLYGLCDDAVQLIMQMQEEGIC 207

Query: 75  SWTAMICG----LADAGRVCEARKLFEEMPERNVVSWNSMVVGLI----RNGELNEARKV 126
             ++ I G    + +A  +   + L      R+  +   +  GL+    +   L  ARK+
Sbjct: 208 PNSSTIVGVLPTVGEAKALGHGKALHGYCVRRSFDNGVVVGTGLLDMYAKCQCLLYARKI 267

Query: 127 FNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWT---------------- 170
           F+ M ++N +SW+AMI GYV    M EA+ LF++M  ++ +  T                
Sbjct: 268 FDVMGVRNEVSWSAMIGGYVASDCMKEALELFDQMILKDAMDPTPVTLGSVLRACAKLTD 327

Query: 171 ------------------------SMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGG 206
                                   +++S Y + G +++    F  M  K+ VS++A++ G
Sbjct: 328 LSRGRKLHCYIIKLGSVLDILLGNTLLSMYAKCGVIDDAIRFFDEMNPKDSVSFSAIVSG 387

Query: 207 FAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVR-- 264
              NG    +L +F  M+    +G + ++ +   ++        L+        + VR  
Sbjct: 388 CVQNGNAAVALSIFRMMQL---SGIDPDLTTMLGVLPACSHLAALQHGFCSHGYLIVRGF 444

Query: 265 --DEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFME 322
             D +   ++ID Y   G++S A  +F+ M   D V+W AMI G   + L +EA  LF +
Sbjct: 445 ATDTLICNALIDMYSKCGKISFAREVFNRMDRHDIVSWNAMIIGYGIHGLGMEALGLFHD 504

Query: 323 MRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILEN-----CLISMY 377
           + A G+ P + TF  L  +   +  +  GR    +     S    I+       C++ + 
Sbjct: 505 LLALGLKPDDITFICLLSSCSHSGLVMEGR----LWFDAMSRDFSIVPRMEHCICMVDIL 560

Query: 378 AKCGVIDNAYNIFSNM-VSRDLVSWNSMVMGFSHHG---LANETLKVFESMLESGTHPNS 433
            + G+ID A++   NM    D+  W++++     H    L  E  K  +S+    T  N 
Sbjct: 561 GRAGLIDEAHHFIRNMPFEPDVRIWSALLSACRIHKNIELGEEVSKKIQSLGPEST-GNF 619

Query: 434 VTFLGILSA------CSHAGLVSRGWEL 455
           V    I SA       +H  +  + W L
Sbjct: 620 VLLSNIYSAAGRWDDAAHIRITQKDWGL 647



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 81/351 (23%), Positives = 150/351 (42%), Gaps = 59/351 (16%)

Query: 11  VVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPE 70
           VV  T  +  Y+K   +  A+ +F +M  RN VS++AM+ G++ +  + EA  LF++M  
Sbjct: 245 VVVGTGLLDMYAKCQCLLYARKIFDVMGVRNEVSWSAMIGGYVASDCMKEALELFDQMIL 304

Query: 71  RNVVSWTAMICG----------------------------------------LADAGRVC 90
           ++ +  T +  G                                         A  G + 
Sbjct: 305 KDAMDPTPVTLGSVLRACAKLTDLSRGRKLHCYIIKLGSVLDILLGNTLLSMYAKCGVID 364

Query: 91  EARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCM 150
           +A + F+EM  ++ VS++++V G ++NG    A  +F  M +  +      + G +  C 
Sbjct: 365 DAIRFFDEMNPKDSVSFSAIVSGCVQNGNAAVALSIFRMMQLSGIDPDLTTMLGVLPACS 424

Query: 151 MGEAI--------VLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTA 202
              A+         L       + +   ++I  Y + G++     +F RM R ++VSW A
Sbjct: 425 HLAALQHGFCSHGYLIVRGFATDTLICNALIDMYSKCGKISFAREVFNRMDRHDIVSWNA 484

Query: 203 MIGGFAWNGFHKESLLLFIEMKGICDNGNN----CNVQSCNSMINGYIRFGRL--EEAQN 256
           MI G+  +G   E+L LF ++  +    ++    C + SC+   +G +  GRL  +    
Sbjct: 485 MIIGYGIHGLGMEALGLFHDLLALGLKPDDITFICLLSSCSH--SGLVMEGRLWFDAMSR 542

Query: 257 LFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMP-DRDAVAWTAMISG 306
            F  VP  +      M+D     G +  A++   NMP + D   W+A++S 
Sbjct: 543 DFSIVPRMEHC--ICMVDILGRAGLIDEAHHFIRNMPFEPDVRIWSALLSA 591



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/189 (21%), Positives = 87/189 (46%), Gaps = 11/189 (5%)

Query: 338 LFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRD 397
           L  A   + ++   ++IH   +K  S +D  + + L  +Y  C  +  A  +F  + +  
Sbjct: 14  LLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFDEIPNPS 73

Query: 398 LVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFN 457
           ++ WN ++  ++ +G  +  + ++ SML  G  PN  T+  +L ACS    +  G E+ +
Sbjct: 74  VILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGVEI-H 132

Query: 458 AMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHR---IWGALLGAC--- 511
           +   ++ ++       ++++   + G + EA+    RL     HR    W A++  C   
Sbjct: 133 SHAKMFGLESDVFVCTALVDFYAKCGILVEAQ----RLFSSMSHRDVVAWNAMIAGCSLY 188

Query: 512 GFCEGNAEI 520
           G C+   ++
Sbjct: 189 GLCDDAVQL 197


>gi|297742136|emb|CBI33923.3| unnamed protein product [Vitis vinifera]
          Length = 461

 Score =  291 bits (745), Expect = 6e-76,   Method: Compositional matrix adjust.
 Identities = 167/468 (35%), Positives = 253/468 (54%), Gaps = 42/468 (8%)

Query: 112 VGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTS 171
           +G I +GE   AR +     +   +  N++I  Y  C  +G+A  +FE     ++VTW S
Sbjct: 23  IGSIGDGEKIHARILKFGFELDLFVR-NSLIHMYSVCGRIGDARAMFEVCSISDLVTWNS 81

Query: 172 MISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGN 231
           MI GY + GE+     LF  MP +++ SW                               
Sbjct: 82  MIDGYVKNGEIGAARELFEEMPERDLFSW------------------------------- 110

Query: 232 NCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHN 291
                  NSMI GY+  G +  A++LF+ +P RD +SW  MIDGY  V  +  A  LF+ 
Sbjct: 111 -------NSMIAGYVGNGDMTAAEDLFNKMPFRDIVSWNCMIDGYAQVQNMEIACELFNW 163

Query: 292 MPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLG 351
           MP R+ V+W  M++  V+ + + E   +F +M    +P   AT   +  A      +D G
Sbjct: 164 MPYRNVVSWNIMLALYVRIKDYDECLRMFDKMMGETMPN-EATLVSVLTACAHLGRLDRG 222

Query: 352 RQIHCVLMKTES-ESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSH 410
           + IH  +      E D++L   L++MYAKCG +D A ++F  M +R +VSWNSM+MG+  
Sbjct: 223 KWIHSYIKNNRVIEPDVLLSTALLTMYAKCGAMDLARDVFDKMSNRSVVSWNSMIMGYGM 282

Query: 411 HGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPE 470
           HG A++ L++F  M + G  PN  TF+ +LSAC+H+G++  GW  F+ M   YKI+P  E
Sbjct: 283 HGQADKALEMFLDMEKRGPMPNDATFICVLSACAHSGMILEGWWYFDLMRRAYKIEPKVE 342

Query: 471 HYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLE 530
           HY  M++LLGRAG +K+ EE + ++P E    +WGALL AC     N+E+AE  AKRL+E
Sbjct: 343 HYGCMVDLLGRAGLMKDLEELIRKMPMEGGTALWGALLSACR-THSNSELAEIVAKRLIE 401

Query: 531 LDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMR 578
           L+P +   +++L NIYAA G+  +   +R  M  +G+ K  G S  +R
Sbjct: 402 LEPRDIGPYLLLSNIYAAEGKWDDVEIVRKMMKERGLTKTTGLSSSLR 449



 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 100/355 (28%), Positives = 168/355 (47%), Gaps = 43/355 (12%)

Query: 46  NAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVV 105
           N+++  +   GR+ +AR +FE     ++V+W +MI G    G +  AR+LFEEMPER++ 
Sbjct: 49  NSLIHMYSVCGRIGDARAMFEVCSISDLVTWNSMIDGYVKNGEIGAARELFEEMPERDLF 108

Query: 106 SWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERN 165
           SWNSM+ G + NG++  A  +FN MP ++++SWN MI GY +   M  A  LF  M  RN
Sbjct: 109 SWNSMIAGYVGNGDMTAAEDLFNKMPFRDIVSWNCMIDGYAQVQNMEIACELFNWMPYRN 168

Query: 166 VVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKG 225
           VV+W  M++ Y R  + +E   +F +M  + + +   ++           S+L      G
Sbjct: 169 VVSWNIMLALYVRIKDYDECLRMFDKMMGETMPNEATLV-----------SVLTACAHLG 217

Query: 226 ICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNA 285
             D G           I+ YI+  R+ E   L            T+++  Y   G +  A
Sbjct: 218 RLDRGK---------WIHSYIKNNRVIEPDVLLS----------TALLTMYAKCGAMDLA 258

Query: 286 YYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGAT 345
             +F  M +R  V+W +MI G   +    +A  +F++M   G  P +ATF  +  A   +
Sbjct: 259 RDVFDKMSNRSVVSWNSMIMGYGMHGQADKALEMFLDMEKRGPMPNDATFICVLSACAHS 318

Query: 346 ANI-------DLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNM 393
             I       DL R+ + +  K E         C++ +  + G++ +   +   M
Sbjct: 319 GMILEGWWYFDLMRRAYKIEPKVEHYG------CMVDLLGRAGLMKDLEELIRKM 367



 Score =  145 bits (366), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 103/389 (26%), Positives = 185/389 (47%), Gaps = 56/389 (14%)

Query: 16  SSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVS 75
           S I  YS  G I +A+A+F++    ++V++N+M+ G+++NG +  AR LFEEMPER++ S
Sbjct: 50  SLIHMYSVCGRIGDARAMFEVCSISDLVTWNSMIDGYVKNGEIGAARELFEEMPERDLFS 109

Query: 76  WTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNV 135
           W +MI G    G +  A  LF +MP R++VSWN M+ G  +   +  A ++FN MP +NV
Sbjct: 110 WNSMIAGYVGNGDMTAAEDLFNKMPFRDIVSWNCMIDGYAQVQNMEIACELFNWMPYRNV 169

Query: 136 ISWNAMIAGYVECCMMGEAIVLFEEME--------------------------------- 162
           +SWN M+A YV      E + +F++M                                  
Sbjct: 170 VSWNIMLALYVRIKDYDECLRMFDKMMGETMPNEATLVSVLTACAHLGRLDRGKWIHSYI 229

Query: 163 ------ERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKES 216
                 E +V+  T++++ Y + G ++    +F +M  ++VVSW +MI G+  +G   ++
Sbjct: 230 KNNRVIEPDVLLSTALLTMYAKCGAMDLARDVFDKMSNRSVVSWNSMIMGYGMHGQADKA 289

Query: 217 LLLFIEMKGICDNGNN----CNVQSC---NSMINGYIRFGRLEEAQNLFDTVPVRDEISW 269
           L +F++M+      N+    C + +C     ++ G+  F  +  A  +   V       +
Sbjct: 290 LEMFLDMEKRGPMPNDATFICVLSACAHSGMILEGWWYFDLMRRAYKIEPKVE-----HY 344

Query: 270 TSMIDGYLSVGQVSNAYYLFHNMPDRDAVA-WTAMISGL---VQNELFVEATYLFMEMRA 325
             M+D     G + +   L   MP     A W A++S       +EL        +E+  
Sbjct: 345 GCMVDLLGRAGLMKDLEELIRKMPMEGGTALWGALLSACRTHSNSELAEIVAKRLIELEP 404

Query: 326 HGVPPLNATFSVLFGAAGATANIDLGRQI 354
             + P     S ++ A G   ++++ R++
Sbjct: 405 RDIGPY-LLLSNIYAAEGKWDDVEIVRKM 432



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 36/99 (36%), Positives = 52/99 (52%)

Query: 328 VPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAY 387
           V P + TF +L        +I  G +IH  ++K   E DL + N LI MY+ CG I +A 
Sbjct: 6   VAPNHYTFPLLVKVCWEIGSIGDGEKIHARILKFGFELDLFVRNSLIHMYSVCGRIGDAR 65

Query: 388 NIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLE 426
            +F      DLV+WNSM+ G+  +G      ++FE M E
Sbjct: 66  AMFEVCSISDLVTWNSMIDGYVKNGEIGAARELFEEMPE 104


>gi|449458534|ref|XP_004147002.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Cucumis sativus]
          Length = 989

 Score =  291 bits (745), Expect = 7e-76,   Method: Compositional matrix adjust.
 Identities = 180/631 (28%), Positives = 318/631 (50%), Gaps = 55/631 (8%)

Query: 21  YSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNV----VSW 76
           Y+K G I+ A  +F  MP++N V++N +L+G+ Q G ++   +LF  M E +V     + 
Sbjct: 258 YAKCGEIELASKMFIGMPEQNDVTWNVLLNGYAQRGDVTGVLKLFCSMMELDVKCNEFTL 317

Query: 77  TAMI-------------------------------CGLADAGRVC----EARKLFEEMPE 101
           T ++                               CGL D    C    +A  +F+ + +
Sbjct: 318 TTVLKGCANSKNLKQGQVIHSLIIKCGYEGNEFIGCGLVDMYSKCGLAIDAIGVFKTIKK 377

Query: 102 RNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECC------MMGEAI 155
            ++V W++++  L + G+  E+ K+F+ M + + +     I   +           G++I
Sbjct: 378 PDIVVWSALITCLDQQGQSEESIKLFHLMRLGDTLPNQYTICSLLSAATNTGNLQYGQSI 437

Query: 156 --VLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFH 213
              +++   E +V    ++++ Y + G V +G  L+  M  ++++SW A + G    G +
Sbjct: 438 HACVWKYGFETDVAVSNALVTMYMKNGCVHDGTKLYESMVDRDLISWNAYLSGLHDCGMY 497

Query: 214 KESLLLFIEM--KGICDNGNN--CNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISW 269
              L +F  M  +G   N       + SC+ + +  + +GR   A  + + +   + +  
Sbjct: 498 DRPLTIFYHMLEEGFIPNMYTFISILGSCSCLFD--VHYGRQVHAHIIKNQLDDNNFVC- 554

Query: 270 TSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVP 329
           T++ID Y     + +A   F+ +  RD   WT +I+   Q     +A   F +M+  GV 
Sbjct: 555 TALIDMYAKCMYLEDADVAFNRLSVRDLFTWTVIITNYAQTNQGEKALNYFRQMQQEGVK 614

Query: 330 PLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNI 389
           P   T +       + A+++ G+Q+H ++ K+   SD+ + + L+ MYAKCG ++ A  +
Sbjct: 615 PNEFTLAGCLSGCSSLASLEGGQQLHSMVFKSGHVSDMFVGSALVDMYAKCGCMEEAEAL 674

Query: 390 FSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLV 449
           F  ++ RD ++WN+++ G++ +G  N+ L  F  ML+ G  P+ VTF GILSACSH GLV
Sbjct: 675 FEALIRRDTIAWNTIICGYAQNGQGNKALTAFRMMLDEGISPDGVTFTGILSACSHQGLV 734

Query: 450 SRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLG 509
             G E FN+M+  + I P  +H   M+++LGR GK  E E+F+ ++    +  IW  +LG
Sbjct: 735 EEGKEHFNSMYRDFGISPTVDHCACMVDILGRVGKFDELEDFIQKMQLSQNALIWETVLG 794

Query: 510 ACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRK 569
           A      N  + E AA +L EL P    ++++L NI+A  GR  +  ++R  M  KGV+K
Sbjct: 795 ASKM-HNNLVLGEKAANKLFELQPEEESSYILLSNIFATEGRWDDVKRVRSLMSSKGVKK 853

Query: 570 VPGCSWLMRNGGIQMFLSGDKIPAQVAEILL 600
            PGCSW+  NG +  F+S D    Q+ EI L
Sbjct: 854 EPGCSWVEANGQVHTFVSHDYSHPQIQEIHL 884



 Score =  168 bits (426), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 105/382 (27%), Positives = 187/382 (48%), Gaps = 17/382 (4%)

Query: 76  WTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNV 135
           W +++   A       AR +  +MP+R+VVSW +++ GL+  G  N++  +F  M  + +
Sbjct: 150 WVSLVNVYAKCRYSAYARLVLAKMPDRDVVSWTALIQGLVAEGFANDSIYLFQEMQNEGI 209

Query: 136 ISWNAMIAGYVECCMMGEAIVLFEEMEER--------NVVTWTSMISGYCRAGEVEEGYC 187
           +     +A  ++ C +  A+ L ++M  +        ++   ++++  Y + GE+E    
Sbjct: 210 MPNEFTLATGLKACSLCMALDLGKQMHAQAFKLGLLLDLFVGSALVDLYAKCGEIELASK 269

Query: 188 LFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIR 247
           +F  MP +N V+W  ++ G+A  G     L LF  M  +      CN  +  +++ G   
Sbjct: 270 MFIGMPEQNDVTWNVLLNGYAQRGDVTGVLKLFCSMMEL---DVKCNEFTLTTVLKGCAN 326

Query: 248 FGRLEEAQNLFDTVPVR-----DEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTA 302
              L++ Q +  ++ ++     +E     ++D Y   G   +A  +F  +   D V W+A
Sbjct: 327 SKNLKQGQ-VIHSLIIKCGYEGNEFIGCGLVDMYSKCGLAIDAIGVFKTIKKPDIVVWSA 385

Query: 303 MISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTE 362
           +I+ L Q     E+  LF  MR     P   T   L  AA  T N+  G+ IH  + K  
Sbjct: 386 LITCLDQQGQSEESIKLFHLMRLGDTLPNQYTICSLLSAATNTGNLQYGQSIHACVWKYG 445

Query: 363 SESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFE 422
            E+D+ + N L++MY K G + +   ++ +MV RDL+SWN+ + G    G+ +  L +F 
Sbjct: 446 FETDVAVSNALVTMYMKNGCVHDGTKLYESMVDRDLISWNAYLSGLHDCGMYDRPLTIFY 505

Query: 423 SMLESGTHPNSVTFLGILSACS 444
            MLE G  PN  TF+ IL +CS
Sbjct: 506 HMLEEGFIPNMYTFISILGSCS 527



 Score =  162 bits (409), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 140/602 (23%), Positives = 262/602 (43%), Gaps = 75/602 (12%)

Query: 16  SSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVS 75
           S +  Y+K  +   A+ +   MP R+VVS+ A++ G +  G  +++  LF+EM    ++ 
Sbjct: 152 SLVNVYAKCRYSAYARLVLAKMPDRDVVSWTALIQGLVAEGFANDSIYLFQEMQNEGIMP 211

Query: 76  WTAMICGLADAGRVCEARKLFEEMPER--------NVVSWNSMVVGLIRNGELNEARKVF 127
               +     A  +C A  L ++M  +        ++   +++V    + GE+  A K+F
Sbjct: 212 NEFTLATGLKACSLCMALDLGKQMHAQAFKLGLLLDLFVGSALVDLYAKCGEIELASKMF 271

Query: 128 NSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNV----VTWTSMISG-------- 175
             MP +N ++WN ++ GY +   +   + LF  M E +V     T T+++ G        
Sbjct: 272 IGMPEQNDVTWNVLLNGYAQRGDVTGVLKLFCSMMELDVKCNEFTLTTVLKGCANSKNLK 331

Query: 176 ---------------------------YCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFA 208
                                      Y + G   +   +F+ + + ++V W+A+I    
Sbjct: 332 QGQVIHSLIIKCGYEGNEFIGCGLVDMYSKCGLAIDAIGVFKTIKKPDIVVWSALITCLD 391

Query: 209 WNGFHKESLLLFIEMKGICDNGNNC-NVQSCNSMINGYIRFGRLEEAQNL--------FD 259
             G  +ES+ LF  M+     G+   N  +  S+++     G L+  Q++        F+
Sbjct: 392 QQGQSEESIKLFHLMRL----GDTLPNQYTICSLLSAATNTGNLQYGQSIHACVWKYGFE 447

Query: 260 TVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYL 319
           T    D     +++  Y+  G V +   L+ +M DRD ++W A +SGL    ++     +
Sbjct: 448 T----DVAVSNALVTMYMKNGCVHDGTKLYESMVDRDLISWNAYLSGLHDCGMYDRPLTI 503

Query: 320 FMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAK 379
           F  M   G  P   TF  + G+     ++  GRQ+H  ++K + + +  +   LI MYAK
Sbjct: 504 FYHMLEEGFIPNMYTFISILGSCSCLFDVHYGRQVHAHIIKNQLDDNNFVCTALIDMYAK 563

Query: 380 CGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGI 439
           C  +++A   F+ +  RDL +W  ++  ++      + L  F  M + G  PN  T  G 
Sbjct: 564 CMYLEDADVAFNRLSVRDLFTWTVIITNYAQTNQGEKALNYFRQMQQEGVKPNEFTLAGC 623

Query: 440 LSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYV--SMINLLGRAGKIKEAEEFVLRLPF 497
           LS CS    +  G +L + +F    +    + +V  +++++  + G ++EAE     L  
Sbjct: 624 LSGCSSLASLEGGQQLHSMVFKSGHV---SDMFVGSALVDMYAKCGCMEEAEALFEAL-I 679

Query: 498 EPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRH--VEE 555
             D   W  ++  CG+ +         A R++ LD   +P  V    I +A      VEE
Sbjct: 680 RRDTIAWNTII--CGYAQNGQGNKALTAFRMM-LDEGISPDGVTFTGILSACSHQGLVEE 736

Query: 556 HK 557
            K
Sbjct: 737 GK 738



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 76/288 (26%), Positives = 138/288 (47%), Gaps = 7/288 (2%)

Query: 169 WTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMK--GI 226
           W S+++ Y +         +  +MP ++VVSWTA+I G    GF  +S+ LF EM+  GI
Sbjct: 150 WVSLVNVYAKCRYSAYARLVLAKMPDRDVVSWTALIQGLVAEGFANDSIYLFQEMQNEGI 209

Query: 227 CDNGNN--CNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSN 284
             N       +++C+  +   +  G+   AQ  F    + D    ++++D Y   G++  
Sbjct: 210 MPNEFTLATGLKACSLCMA--LDLGKQMHAQ-AFKLGLLLDLFVGSALVDLYAKCGEIEL 266

Query: 285 AYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGA 344
           A  +F  MP+++ V W  +++G  Q         LF  M    V     T + +      
Sbjct: 267 ASKMFIGMPEQNDVTWNVLLNGYAQRGDVTGVLKLFCSMMELDVKCNEFTLTTVLKGCAN 326

Query: 345 TANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSM 404
           + N+  G+ IH +++K   E +  +   L+ MY+KCG+  +A  +F  +   D+V W+++
Sbjct: 327 SKNLKQGQVIHSLIIKCGYEGNEFIGCGLVDMYSKCGLAIDAIGVFKTIKKPDIVVWSAL 386

Query: 405 VMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRG 452
           +      G + E++K+F  M    T PN  T   +LSA ++ G +  G
Sbjct: 387 ITCLDQQGQSEESIKLFHLMRLGDTLPNQYTICSLLSAATNTGNLQYG 434



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 81/291 (27%), Positives = 142/291 (48%), Gaps = 17/291 (5%)

Query: 265 DEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMR 324
           D   W S+++ Y      + A  +   MPDRD V+WTA+I GLV      ++ YLF EM+
Sbjct: 146 DSHLWVSLVNVYAKCRYSAYARLVLAKMPDRDVVSWTALIQGLVAEGFANDSIYLFQEMQ 205

Query: 325 AHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVID 384
             G+ P   T +    A      +DLG+Q+H    K     DL + + L+ +YAKCG I+
Sbjct: 206 NEGIMPNEFTLATGLKACSLCMALDLGKQMHAQAFKLGLLLDLFVGSALVDLYAKCGEIE 265

Query: 385 NAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACS 444
            A  +F  M  ++ V+WN ++ G++  G     LK+F SM+E     N  T   +L  C+
Sbjct: 266 LASKMFIGMPEQNDVTWNVLLNGYAQRGDVTGVLKLFCSMMELDVKCNEFTLTTVLKGCA 325

Query: 445 HAGLVSRGWELFNAMFDVYKIQPGPE--HYV--SMINLLGRAGKIKEAEEFVLRLPFEPD 500
           ++  + +G  + + +     I+ G E   ++   ++++  + G   +A   V +   +PD
Sbjct: 326 NSKNLKQGQVIHSLI-----IKCGYEGNEFIGCGLVDMYSKCGLAIDAIG-VFKTIKKPD 379

Query: 501 HRIWGALLGACGFCEGNAEIAEHAAKRLLELDPL--NAPAHVVLCNIYAAS 549
             +W AL+  C   +G +E     + +L  L  L    P    +C++ +A+
Sbjct: 380 IVVWSALI-TCLDQQGQSE----ESIKLFHLMRLGDTLPNQYTICSLLSAA 425



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 45/176 (25%), Positives = 86/176 (48%), Gaps = 6/176 (3%)

Query: 335 FSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMV 394
           +S +     +  ++ + + IH +++K     D  L   L+++YAKC     A  + + M 
Sbjct: 115 YSSMLRECASKRSLGVAKAIHGLIVKDVINPDSHLWVSLVNVYAKCRYSAYARLVLAKMP 174

Query: 395 SRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWE 454
            RD+VSW +++ G    G AN+++ +F+ M   G  PN  T    L ACS    +  G +
Sbjct: 175 DRDVVSWTALIQGLVAEGFANDSIYLFQEMQNEGIMPNEFTLATGLKACSLCMALDLGKQ 234

Query: 455 LFNAMFDVYKIQPGPEHYV--SMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALL 508
           +    F   K+    + +V  ++++L  + G+I+ A +  + +P E +   W  LL
Sbjct: 235 MHAQAF---KLGLLLDLFVGSALVDLYAKCGEIELASKMFIGMP-EQNDVTWNVLL 286



 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 71/341 (20%), Positives = 141/341 (41%), Gaps = 58/341 (17%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPER----NV 73
           +T Y K G + +   L++ M  R+++S+NA LSG    G       +F  M E     N+
Sbjct: 457 VTMYMKNGCVHDGTKLYESMVDRDLISWNAYLSGLHDCGMYDRPLTIFYHMLEEGFIPNM 516

Query: 74  VSWTAMI--CG-LADA--GRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFN 128
            ++ +++  C  L D   GR   A  +  ++ + N V   +++    +   L +A   FN
Sbjct: 517 YTFISILGSCSCLFDVHYGRQVHAHIIKNQLDDNNFVC-TALIDMYAKCMYLEDADVAFN 575

Query: 129 SMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNV----VTWTSMISG--------- 175
            + ++++ +W  +I  Y +     +A+  F +M++  V     T    +SG         
Sbjct: 576 RLSVRDLFTWTVIITNYAQTNQGEKALNYFRQMQQEGVKPNEFTLAGCLSGCSSLASLEG 635

Query: 176 --------------------------YCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAW 209
                                     Y + G +EE   LF  + R++ ++W  +I G+A 
Sbjct: 636 GQQLHSMVFKSGHVSDMFVGSALVDMYAKCGCMEEAEALFEALIRRDTIAWNTIICGYAQ 695

Query: 210 NGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISW 269
           NG   ++L  F   + + D G + +  +   +++     G +EE +  F+++     IS 
Sbjct: 696 NGQGNKALTAF---RMMLDEGISPDGVTFTGILSACSHQGLVEEGKEHFNSMYRDFGISP 752

Query: 270 T-----SMIDGYLSVGQVSNAYYLFHNMP-DRDAVAWTAMI 304
           T      M+D    VG+          M   ++A+ W  ++
Sbjct: 753 TVDHCACMVDILGRVGKFDELEDFIQKMQLSQNALIWETVL 793


>gi|224122892|ref|XP_002318942.1| predicted protein [Populus trichocarpa]
 gi|222857318|gb|EEE94865.1| predicted protein [Populus trichocarpa]
          Length = 707

 Score =  291 bits (745), Expect = 7e-76,   Method: Compositional matrix adjust.
 Identities = 201/664 (30%), Positives = 318/664 (47%), Gaps = 116/664 (17%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSE--ARRLFEEMPERNVVS 75
           I  Y+K G +  AK +F+ +  +NVVSYN ++ G   NG         LF  M   N++ 
Sbjct: 50  IKFYAKCGHLHGAKLVFENLKHKNVVSYNCLIHGLSHNGSKGSNFVLELFRRMIANNILP 109

Query: 76  --------WTAM--------------ICGLADA------------------GRVCEARKL 95
                   +TA               + G+  A                  G V EARKL
Sbjct: 110 DAHTFPGVFTAAALNLGCNFDARQVHVLGIKTASIDDVFVGSSLVNFYCKVGCVFEARKL 169

Query: 96  FEEMPERNVVSWNSM---------------VVGLIR--NGELNE---------------- 122
           F+ MPERN+VSW +M               V GL+R   G LNE                
Sbjct: 170 FDRMPERNLVSWTTMISGYASKQMAKEALGVFGLMRLVEGNLNEFVFTSVLSALVCPEFV 229

Query: 123 -ARKVFNSMPIKN-----VISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGY 176
            + K  + + +KN     V   NA++  Y +C  +  +++LFE   ++N +TW+++I+GY
Sbjct: 230 DSGKQVHCVVVKNGVLEFVSVLNALVTMYAKCGNLNYSLMLFEMCSDKNAITWSALITGY 289

Query: 177 CRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKG-ICDNGNNCNV 235
            +AG+  +   LF +M     V     + G         ++    +  G +  +G    +
Sbjct: 290 SQAGDSHKALKLFSKMHYAGFVPSEFTLVGVLKACSDVAAIEEGKQTHGYLLKSGYETQI 349

Query: 236 QSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDR 295
            +  ++++ Y +FG   +A+  FD +   D + WTS+I GY+  G               
Sbjct: 350 YTATALVDMYAKFGFTGDARKGFDFLLEPDLVLWTSIIAGYVQNG--------------- 394

Query: 296 DAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIH 355
                        +NE   EA  ++  M+   + P   T + +  A    A ++ G+QIH
Sbjct: 395 -------------KNE---EALSMYGRMQMRKILPNELTMASVLKACSNLAALEQGKQIH 438

Query: 356 CVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLAN 415
              +K     +L + + L +MYAKCG ++    IF  M+ RD+VSWN+M+ G S +G   
Sbjct: 439 ARTIKYGLGPELSIRSALSTMYAKCGSLEEGVLIFRRMLQRDIVSWNAMISGLSQNGHGR 498

Query: 416 ETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSM 475
           E L++FE M   GT P+ +TF+ +LSACSH G+V RGW  FN MFD + + P  EHY  M
Sbjct: 499 EALELFEEMRLEGTKPDHITFVTVLSACSHMGIVKRGWAYFNMMFDEFCLVPRVEHYACM 558

Query: 476 INLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGAC-GFCEGNAEIAEHAAKRLLELDPL 534
           +++L RAGK+ EA+EF+     +    +W  LL AC   C  N E+  +A ++L+EL   
Sbjct: 559 VDVLSRAGKLNEAKEFIESAIIDHGMCLWRILLPACRNHC--NYELGAYAGEKLMELGSR 616

Query: 535 NAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQ 594
            + A+V+L +IY A GR  +  ++R  M ++GVRK  GCSW+     + +F+ GD+I  Q
Sbjct: 617 ESSAYVLLSSIYTAMGRLADVVRVRRMMKVRGVRKETGCSWIELKSHVHVFVVGDQIHPQ 676

Query: 595 VAEI 598
           + EI
Sbjct: 677 IEEI 680



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 122/492 (24%), Positives = 224/492 (45%), Gaps = 28/492 (5%)

Query: 38  PQRNVVSYNAMLS----GFLQNGRLSEARRLFEEMPERNVVSWTA--MICGLADAGRVCE 91
           P +N   YN ++       L+ G++  A  +  ++P  +  ++ A  +I   A  G +  
Sbjct: 4   PPQNRSFYNLLIQYADQKSLKKGQILHAHII--KIPYLSSCNYLANNLIKFYAKCGHLHG 61

Query: 92  ARKLFEEMPERNVVSWNSMVVGLIRNGEL--NEARKVFNSMPIKNVISWNAMIAGYVECC 149
           A+ +FE +  +NVVS+N ++ GL  NG    N   ++F  M   N++       G     
Sbjct: 62  AKLVFENLKHKNVVSYNCLIHGLSHNGSKGSNFVLELFRRMIANNILPDAHTFPGVFTAA 121

Query: 150 MMGEA---------IVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSW 200
            +            ++  +     +V   +S+++ YC+ G V E   LF RMP +N+VSW
Sbjct: 122 ALNLGCNFDARQVHVLGIKTASIDDVFVGSSLVNFYCKVGCVFEARKLFDRMPERNLVSW 181

Query: 201 TAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDT 260
           T MI G+A     KE+L +F  M+ +     N N     S+++  +    ++  + +   
Sbjct: 182 TTMISGYASKQMAKEALGVFGLMRLV---EGNLNEFVFTSVLSALVCPEFVDSGKQVHCV 238

Query: 261 VPVRDEISWTSMIDG----YLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEA 316
           V     + + S+++     Y   G ++ +  LF    D++A+ W+A+I+G  Q     +A
Sbjct: 239 VVKNGVLEFVSVLNALVTMYAKCGNLNYSLMLFEMCSDKNAITWSALITGYSQAGDSHKA 298

Query: 317 TYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISM 376
             LF +M   G  P   T   +  A    A I+ G+Q H  L+K+  E+ +     L+ M
Sbjct: 299 LKLFSKMHYAGFVPSEFTLVGVLKACSDVAAIEEGKQTHGYLLKSGYETQIYTATALVDM 358

Query: 377 YAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTF 436
           YAK G   +A   F  ++  DLV W S++ G+  +G   E L ++  M      PN +T 
Sbjct: 359 YAKFGFTGDARKGFDFLLEPDLVLWTSIIAGYVQNGKNEEALSMYGRMQMRKILPNELTM 418

Query: 437 LGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLP 496
             +L ACS+   + +G ++ +A    Y + P      ++  +  + G ++E    + R  
Sbjct: 419 ASVLKACSNLAALEQGKQI-HARTIKYGLGPELSIRSALSTMYAKCGSLEEG-VLIFRRM 476

Query: 497 FEPDHRIWGALL 508
            + D   W A++
Sbjct: 477 LQRDIVSWNAMI 488



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 113/486 (23%), Positives = 204/486 (41%), Gaps = 76/486 (15%)

Query: 15  TSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEM------ 68
           +S +  Y K G + EA+ LF  MP+RN+VS+  M+SG+       EA  +F  M      
Sbjct: 151 SSLVNFYCKVGCVFEARKLFDRMPERNLVSWTTMISGYASKQMAKEALGVFGLMRLVEGN 210

Query: 69  ---------------PE-------------RN-----VVSWTAMICGLADAGRVCEARKL 95
                          PE             +N     V    A++   A  G +  +  L
Sbjct: 211 LNEFVFTSVLSALVCPEFVDSGKQVHCVVVKNGVLEFVSVLNALVTMYAKCGNLNYSLML 270

Query: 96  FEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAI 155
           FE   ++N ++W++++ G  + G+ ++A K+F+ M     +     + G ++ C    AI
Sbjct: 271 FEMCSDKNAITWSALITGYSQAGDSHKALKLFSKMHYAGFVPSEFTLVGVLKACSDVAAI 330

Query: 156 --------VLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGF 207
                    L +   E  + T T+++  Y + G   +    F  +   ++V WT++I G+
Sbjct: 331 EEGKQTHGYLLKSGYETQIYTATALVDMYAKFGFTGDARKGFDFLLEPDLVLWTSIIAGY 390

Query: 208 AWNGFHKESLLLF--IEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTV---P 262
             NG ++E+L ++  ++M+ I  N       +  S++        LE+ + +        
Sbjct: 391 VQNGKNEEALSMYGRMQMRKILPNE-----LTMASVLKACSNLAALEQGKQIHARTIKYG 445

Query: 263 VRDEISWTSMIDG-YLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFM 321
           +  E+S  S +   Y   G +     +F  M  RD V+W AMISGL QN    EA  LF 
Sbjct: 446 LGPELSIRSALSTMYAKCGSLEEGVLIFRRMLQRDIVSWNAMISGLSQNGHGREALELFE 505

Query: 322 EMRAHGVPPLNATFSVLFGAAGATANIDLGRQI-------HCVLMKTESESDLILENCLI 374
           EMR  G  P + TF  +  A      +  G           C++ + E  +      C++
Sbjct: 506 EMRLEGTKPDHITFVTVLSACSHMGIVKRGWAYFNMMFDEFCLVPRVEHYA------CMV 559

Query: 375 SMYAKCGVIDNAYN-IFSNMVSRDLVSWNSMVMGFSHHGLANETLKVF--ESMLESGTHP 431
            + ++ G ++ A   I S ++   +  W  ++    +H   N  L  +  E ++E G+  
Sbjct: 560 DVLSRAGKLNEAKEFIESAIIDHGMCLWRILLPACRNH--CNYELGAYAGEKLMELGSRE 617

Query: 432 NSVTFL 437
           +S   L
Sbjct: 618 SSAYVL 623



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 63/258 (24%), Positives = 126/258 (48%), Gaps = 47/258 (18%)

Query: 14  LTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMP---- 69
           L + +T Y+K G ++ +  LF++   +N ++++A+++G+ Q G   +A +LF +M     
Sbjct: 251 LNALVTMYAKCGNLNYSLMLFEMCSDKNAITWSALITGYSQAGDSHKALKLFSKMHYAGF 310

Query: 70  -----------------------------------ERNVVSWTAMICGLADAGRVCEARK 94
                                              E  + + TA++   A  G   +ARK
Sbjct: 311 VPSEFTLVGVLKACSDVAAIEEGKQTHGYLLKSGYETQIYTATALVDMYAKFGFTGDARK 370

Query: 95  LFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEA 154
            F+ + E ++V W S++ G ++NG+  EA  ++  M ++ ++     +A  ++ C    A
Sbjct: 371 GFDFLLEPDLVLWTSIIAGYVQNGKNEEALSMYGRMQMRKILPNELTMASVLKACSNLAA 430

Query: 155 IVLFEEMEERNV--------VTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGG 206
           +   +++  R +           +++ + Y + G +EEG  +FRRM ++++VSW AMI G
Sbjct: 431 LEQGKQIHARTIKYGLGPELSIRSALSTMYAKCGSLEEGVLIFRRMLQRDIVSWNAMISG 490

Query: 207 FAWNGFHKESLLLFIEMK 224
            + NG  +E+L LF EM+
Sbjct: 491 LSQNGHGREALELFEEMR 508


>gi|359497398|ref|XP_002270940.2| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 640

 Score =  291 bits (745), Expect = 7e-76,   Method: Compositional matrix adjust.
 Identities = 169/491 (34%), Positives = 262/491 (53%), Gaps = 19/491 (3%)

Query: 119 ELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTS-----MI 173
           +L  AR VF+ +P  +   WN MI  Y+      E++ LF +M  +  +   S     +I
Sbjct: 53  DLLYARSVFDEIPSPDTFIWNTMIRAYLNSQNPQESMSLFFQMRHQECIPIDSYSLSLVI 112

Query: 174 SGYCRAGEVEEGYCLFRRMPR----KNVVSWTAMIGGFAWNGFHKESLLLFIEM-KGICD 228
               R  +   G  L  ++ +     ++   TA+I  +A  G         IE+ + I D
Sbjct: 113 QACGRLKDPGNGQKLHTQVLKIGLGSDLFVETALIEMYAKFGD--------IEIARNILD 164

Query: 229 NGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYL 288
              + ++   N ++  Y+R G +  A +LFD +P RD +SW +MI G+ S+G V  A  L
Sbjct: 165 EMAHPDLVPYNVLLAEYVRVGEINLAHDLFDRMPERDLVSWNTMIHGHASLGDVGTAKKL 224

Query: 289 FHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANI 348
           F    +RD ++W++MI+   +     EA  LF EM+   V P   T   +  A G    +
Sbjct: 225 FDRTCERDLISWSSMIAAYAKARQSNEALRLFHEMQLANVLPDKVTMVSVLSACGDVGAL 284

Query: 349 DLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGF 408
            +G+ IH  + +   E DL L   L+ MYAKCG IDN+  +F+ M +RD+ +W++M+MG 
Sbjct: 285 GMGKMIHECIERNRIEIDLKLGTSLVDMYAKCGDIDNSLRVFNGMNNRDVFAWSAMIMGL 344

Query: 409 SHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPG 468
           ++HG     L  F  M+     PN VTF+G+LSACSH GLV  GW  F +M  VY + P 
Sbjct: 345 ANHGFGELALDHFSKMISEDIKPNDVTFIGVLSACSHIGLVDEGWTYFTSMSKVYDVSPK 404

Query: 469 PEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRL 528
            EHY  ++++LGRAG+++EA E +  +PF PD  +W ALLGAC   + N EIAE A   L
Sbjct: 405 IEHYGCVVDILGRAGRLQEAMELIKSMPFAPDAIVWRALLGACRIYK-NVEIAEEATVNL 463

Query: 529 LELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSG 588
           LEL+P     +V+L NIY+ +    +   +R  M    ++KVPG S +  +  +  F++G
Sbjct: 464 LELEPHVDGNYVLLSNIYSQAKEWDKVVNVRRMMKNINIQKVPGSSSIEVDNAVHEFVAG 523

Query: 589 DKIPAQVAEIL 599
           D+   +  +IL
Sbjct: 524 DQSHPESKKIL 534



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 92/329 (27%), Positives = 172/329 (52%), Gaps = 20/329 (6%)

Query: 15  TSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVV 74
           T+ I  Y+K G I+ A+ +   M   ++V YN +L+ +++ G ++ A  LF+ MPER++V
Sbjct: 144 TALIEMYAKFGDIEIARNILDEMAHPDLVPYNVLLAEYVRVGEINLAHDLFDRMPERDLV 203

Query: 75  SWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKN 134
           SW  MI G A  G V  A+KLF+   ER+++SW+SM+    +  + NEA ++F+ M + N
Sbjct: 204 SWNTMIHGHASLGDVGTAKKLFDRTCERDLISWSSMIAAYAKARQSNEALRLFHEMQLAN 263

Query: 135 VISWNAMIAGYVECC----MMGEAIVLFEEME----ERNVVTWTSMISGYCRAGEVEEGY 186
           V+     +   +  C     +G   ++ E +E    E ++   TS++  Y + G+++   
Sbjct: 264 VLPDKVTMVSVLSACGDVGALGMGKMIHECIERNRIEIDLKLGTSLVDMYAKCGDIDNSL 323

Query: 187 CLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYI 246
            +F  M  ++V +W+AMI G A +GF + +L  F +M  I ++    +V     +++   
Sbjct: 324 RVFNGMNNRDVFAWSAMIMGLANHGFGELALDHFSKM--ISEDIKPNDVTFI-GVLSACS 380

Query: 247 RFGRLEEAQNLFDTVPVRDEIS-----WTSMIDGYLSVGQVSNAYYLFHNMP-DRDAVAW 300
             G ++E    F ++    ++S     +  ++D     G++  A  L  +MP   DA+ W
Sbjct: 381 HIGLVDEGWTYFTSMSKVYDVSPKIEHYGCVVDILGRAGRLQEAMELIKSMPFAPDAIVW 440

Query: 301 TAMISG--LVQN-ELFVEATYLFMEMRAH 326
            A++    + +N E+  EAT   +E+  H
Sbjct: 441 RALLGACRIYKNVEIAEEATVNLLELEPH 469



 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 90/399 (22%), Positives = 163/399 (40%), Gaps = 65/399 (16%)

Query: 61  ARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLI----- 115
           AR +F+E+P  +   W  MI    ++    E+  LF +M  +  +  +S  + L+     
Sbjct: 57  ARSVFDEIPSPDTFIWNTMIRAYLNSQNPQESMSLFFQMRHQECIPIDSYSLSLVIQACG 116

Query: 116 -----------------------------------RNGELNEARKVFNSMPIKNVISWNA 140
                                              + G++  AR + + M   +++ +N 
Sbjct: 117 RLKDPGNGQKLHTQVLKIGLGSDLFVETALIEMYAKFGDIEIARNILDEMAHPDLVPYNV 176

Query: 141 MIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSW 200
           ++A YV    +  A  LF+ M ER++V+W +MI G+   G+V     LF R   ++++SW
Sbjct: 177 LLAEYVRVGEINLAHDLFDRMPERDLVSWNTMIHGHASLGDVGTAKKLFDRTCERDLISW 236

Query: 201 TAMIGGFAWNGFHKESLLLFIEMK------------GICDNGNNCNVQSCNSMINGYIRF 248
           ++MI  +A      E+L LF EM+             +     +        MI+  I  
Sbjct: 237 SSMIAAYAKARQSNEALRLFHEMQLANVLPDKVTMVSVLSACGDVGALGMGKMIHECIER 296

Query: 249 GRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLV 308
            R+E    L            TS++D Y   G + N+  +F+ M +RD  AW+AMI GL 
Sbjct: 297 NRIEIDLKL-----------GTSLVDMYAKCGDIDNSLRVFNGMNNRDVFAWSAMIMGLA 345

Query: 309 QNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLI 368
            +     A   F +M +  + P + TF  +  A      +D G      + K    S  I
Sbjct: 346 NHGFGELALDHFSKMISEDIKPNDVTFIGVLSACSHIGLVDEGWTYFTSMSKVYDVSPKI 405

Query: 369 LE-NCLISMYAKCGVIDNAYNIFSNM-VSRDLVSWNSMV 405
               C++ +  + G +  A  +  +M  + D + W +++
Sbjct: 406 EHYGCVVDILGRAGRLQEAMELIKSMPFAPDAIVWRALL 444



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 72/281 (25%), Positives = 126/281 (44%), Gaps = 48/281 (17%)

Query: 7   PKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFE 66
           P+  +V   + I  ++  G +  AK LF    +R+++S+++M++ + +  + +EA RLF 
Sbjct: 198 PERDLVSWNTMIHGHASLGDVGTAKKLFDRTCERDLISWSSMIAAYAKARQSNEALRLFH 257

Query: 67  EMPERNV----VSWTAMICGLADAGRVCEARKLFEEMPERNVVSWN-----SMVVGLIRN 117
           EM   NV    V+  +++    D G +    K+  E  ERN +  +     S+V    + 
Sbjct: 258 EMQLANVLPDKVTMVSVLSACGDVGALGMG-KMIHECIERNRIEIDLKLGTSLVDMYAKC 316

Query: 118 GELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNV----VTWTSMI 173
           G+++ + +VFN M  ++V +W+AMI G         A+  F +M   ++    VT+  ++
Sbjct: 317 GDIDNSLRVFNGMNNRDVFAWSAMIMGLANHGFGELALDHFSKMISEDIKPNDVTFIGVL 376

Query: 174 SGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNC 233
           S     G V+EG+  F  M +   VS                     IE  G        
Sbjct: 377 SACSHIGLVDEGWTYFTSMSKVYDVSPK-------------------IEHYG-------- 409

Query: 234 NVQSCNSMINGYIRFGRLEEAQNLFDTVP-VRDEISWTSMI 273
               C   I G  R GRL+EA  L  ++P   D I W +++
Sbjct: 410 ----CVVDILG--RAGRLQEAMELIKSMPFAPDAIVWRALL 444


>gi|297849508|ref|XP_002892635.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338477|gb|EFH68894.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 809

 Score =  291 bits (745), Expect = 7e-76,   Method: Compositional matrix adjust.
 Identities = 187/626 (29%), Positives = 306/626 (48%), Gaps = 57/626 (9%)

Query: 15  TSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNV- 73
           T  ++ + + G +DEA  +F+ + ++  V Y  ML GF +   L +A + F  M +  V 
Sbjct: 73  TKLVSLFCRYGSVDEAARVFEPIDKKLNVLYYTMLKGFAKVSDLDKALKFFVRMRDDEVE 132

Query: 74  -----VSWTAMICGLADAGRVCEARK--LFEEMPERNVVSWNSMVVGLIRNGELNEARKV 126
                 ++   +CG     RV +     L +     ++ +   +     +  +++EARKV
Sbjct: 133 PVVYNFTYLLKVCGDEAELRVGKEIHGLLVKSGFSLDLFAMTGLENMYAKCRQVHEARKV 192

Query: 127 FNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERN--------------------- 165
           F+ MP ++++SWN ++AGY +  M   A+ +   M E N                     
Sbjct: 193 FDRMPERDLVSWNTIVAGYSQNGMARMALEMVNLMCEENLKPSFITIVSVLPAVSALRLI 252

Query: 166 ------------------VVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGF 207
                             V   T+++  Y + G ++    LF  M  +NVVSW +MI  +
Sbjct: 253 RIGKEIHGYAMRAGFDSLVNIATALVDMYAKCGSLKTARLLFDGMLERNVVSWNSMIDAY 312

Query: 208 AWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEI 267
             N   KE++++F +M    D G      S    ++     G LE  +     + V  E+
Sbjct: 313 VQNENPKEAMVIFQKM---LDEGVKPTDVSVMGALHACADLGDLERGR-FIHKLSVELEL 368

Query: 268 SWT-----SMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFME 322
                   S+I  Y    +V  A  +F  +  R  V+W AMI G  QN   +EA   F +
Sbjct: 369 DRNVSVVNSLISMYCKCKEVDTAASMFGKLQSRTIVSWNAMILGFAQNGRPIEALNYFSQ 428

Query: 323 MRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGV 382
           M+A  V P   T+  +  A    +     + IH V+M+   + ++ +   L+ MYAKCG 
Sbjct: 429 MQARTVKPDTFTYVSVITAIAELSITHHAKWIHGVVMRNCLDKNVFVTTALVDMYAKCGA 488

Query: 383 IDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSA 442
           I  A  IF  M  R + +WN+M+ G+  HG+    L++FE M +    PN VTFL ++SA
Sbjct: 489 IMIARLIFDMMSERHVTTWNAMIDGYGTHGIGKAALELFEEMQKGTIRPNGVTFLSVISA 548

Query: 443 CSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHR 502
           CSH+GLV  G + F+ M + Y I+P  +HY +M++LLGRAG++ EA +F++++P +P   
Sbjct: 549 CSHSGLVEAGLKCFHMMKENYSIEPSMDHYGAMVDLLGRAGRLNEAWDFIMQMPVKPAVN 608

Query: 503 IWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDM 562
           ++GA+LGAC     N   AE  A+RL EL+P +   HV+L NIY A+    +  ++R+ M
Sbjct: 609 VYGAMLGACQI-HKNVNFAEKVAERLFELNPEDGGYHVLLANIYRAASMWEKVGQVRVSM 667

Query: 563 GLKGVRKVPGCSWLMRNGGIQMFLSG 588
             +G+RK PGCS +     +  F SG
Sbjct: 668 LRQGLRKTPGCSMVEIKNEVHSFFSG 693



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 64/236 (27%), Positives = 114/236 (48%), Gaps = 9/236 (3%)

Query: 257 LFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEA 316
           +F     ++ +  T ++  +   G V  A  +F  +  +  V +  M+ G  +     +A
Sbjct: 60  IFKNGLYQEHLFQTKLVSLFCRYGSVDEAARVFEPIDKKLNVLYYTMLKGFAKVSDLDKA 119

Query: 317 TYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISM 376
              F+ MR   V P+   F+ L    G  A + +G++IH +L+K+    DL     L +M
Sbjct: 120 LKFFVRMRDDEVEPVVYNFTYLLKVCGDEAELRVGKEIHGLLVKSGFSLDLFAMTGLENM 179

Query: 377 YAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTF 436
           YAKC  +  A  +F  M  RDLVSWN++V G+S +G+A   L++   M E    P+ +T 
Sbjct: 180 YAKCRQVHEARKVFDRMPERDLVSWNTIVAGYSQNGMARMALEMVNLMCEENLKPSFITI 239

Query: 437 LGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYV----SMINLLGRAGKIKEA 488
           + +L A S   L+  G E+       Y ++ G +  V    +++++  + G +K A
Sbjct: 240 VSVLPAVSALRLIRIGKEIHG-----YAMRAGFDSLVNIATALVDMYAKCGSLKTA 290



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 91/353 (25%), Positives = 151/353 (42%), Gaps = 55/353 (15%)

Query: 9   SLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEM 68
           SLV   T+ +  Y+K G +  A+ LF  M +RNVVS+N+M+  ++QN    EA  +F++M
Sbjct: 269 SLVNIATALVDMYAKCGSLKTARLLFDGMLERNVVSWNSMIDAYVQNENPKEAMVIFQKM 328

Query: 69  PERNV----VSWTAMICGLADAGRVCEAR---KLFEEMP-ERNVVSWNSMVVGLIRNGEL 120
            +  V    VS    +   AD G +   R   KL  E+  +RNV   NS++    +  E+
Sbjct: 329 LDEGVKPTDVSVMGALHACADLGDLERGRFIHKLSVELELDRNVSVVNSLISMYCKCKEV 388

Query: 121 NEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEER---------------- 164
           + A  +F  +  + ++SWNAMI G+ +     EA+  F +M+ R                
Sbjct: 389 DTAASMFGKLQSRTIVSWNAMILGFAQNGRPIEALNYFSQMQARTVKPDTFTYVSVITAI 448

Query: 165 -----------------------NVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWT 201
                                  NV   T+++  Y + G +     +F  M  ++V +W 
Sbjct: 449 AELSITHHAKWIHGVVMRNCLDKNVFVTTALVDMYAKCGAIMIARLIFDMMSERHVTTWN 508

Query: 202 AMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTV 261
           AMI G+  +G  K +L LF EM+      N        S+I+     G +E     F  +
Sbjct: 509 AMIDGYGTHGIGKAALELFEEMQKGTIRPNGVTFL---SVISACSHSGLVEAGLKCFHMM 565

Query: 262 PVRDEIS-----WTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQ 309
                I      + +M+D     G+++ A+     MP + AV     + G  Q
Sbjct: 566 KENYSIEPSMDHYGAMVDLLGRAGRLNEAWDFIMQMPVKPAVNVYGAMLGACQ 618



 Score = 40.4 bits (93), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 32/164 (19%), Positives = 68/164 (41%), Gaps = 14/164 (8%)

Query: 352 RQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHH 411
           R I  ++ K     + + +  L+S++ + G +D A  +F  +  +  V + +M+ GF+  
Sbjct: 54  RHILPLIFKNGLYQEHLFQTKLVSLFCRYGSVDEAARVFEPIDKKLNVLYYTMLKGFAKV 113

Query: 412 GLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAM------FDVYKI 465
              ++ LK F  M +    P    F  +L  C     +  G E+   +       D++ +
Sbjct: 114 SDLDKALKFFVRMRDDEVEPVVYNFTYLLKVCGDEAELRVGKEIHGLLVKSGFSLDLFAM 173

Query: 466 QPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLG 509
                    + N+  +  ++ EA +   R+P E D   W  ++ 
Sbjct: 174 -------TGLENMYAKCRQVHEARKVFDRMP-ERDLVSWNTIVA 209


>gi|225450565|ref|XP_002281942.1| PREDICTED: pentatricopeptide repeat-containing protein At5g48910
           isoform 1 [Vitis vinifera]
          Length = 672

 Score =  291 bits (745), Expect = 7e-76,   Method: Compositional matrix adjust.
 Identities = 172/481 (35%), Positives = 263/481 (54%), Gaps = 14/481 (2%)

Query: 125 KVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEME----ERNVVTWTSMISGYCRAG 180
           +VF+ +   NV  WN MI   +E     +AI+L+ EM       N  T+ +++     AG
Sbjct: 92  RVFDFVRKPNVFLWNCMIKVCIENNEPFKAILLYYEMMVAHFRPNKYTYPAVLKACSDAG 151

Query: 181 EVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDN-GNNCNVQSCN 239
            V EG  +   +  K+ +     I   A   +   S    +E + I D+ G   +    N
Sbjct: 152 VVAEGVQVHAHLV-KHGLGGDGHILSSAIRMY--ASFGRLVEARRILDDKGGEVDAVCWN 208

Query: 240 SMINGYIRFGRLEEAQNLFDTVPVRDEIS-WTSMIDGYLSVGQVSNAYYLFHNMPDRDAV 298
           +MI+GY+RFG +E A+ LF+ +P R  IS W +MI G+   G V  A   F  M +RD +
Sbjct: 209 AMIDGYLRFGEVEAARELFEGMPDRSMISTWNAMISGFSRCGMVEVAREFFDEMKERDEI 268

Query: 299 AWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVL 358
           +W+AMI G +Q   F+EA  +F +M+   + P       +  A      +D GR IH   
Sbjct: 269 SWSAMIDGYIQEGCFMEALEIFHQMQKEKIRPRKFVLPSVLSACANLGALDQGRWIHTYA 328

Query: 359 MKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETL 418
            +   + D +L   L+ MYAKCG ID A+ +F  M ++++ SWN+M+ G + HG A + +
Sbjct: 329 KRNSIQLDGVLGTSLVDMYAKCGRIDLAWEVFEKMSNKEVSSWNAMIGGLAMHGRAEDAI 388

Query: 419 KVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINL 478
            +F  M     +PN +TF+G+L+AC+H GLV +G  +FN+M   Y ++P  EHY  +++L
Sbjct: 389 DLFSKM---DINPNEITFVGVLNACAHGGLVQKGLTIFNSMRKEYGVEPQIEHYGCIVDL 445

Query: 479 LGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPA 538
           LGRAG + EAE+ V  +P EP   +WGALLGAC    GN E+ E   K LLEL+P N+  
Sbjct: 446 LGRAGLLTEAEKVVSSIPTEPTPAVWGALLGACRK-HGNVELGERVGKILLELEPQNSGR 504

Query: 539 HVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWL-MRNGGIQMFLSGDKIPAQVAE 597
           + +L NIYA +GR  E  ++R  M  +G++  PG S + +  G +  F+ GD    QV +
Sbjct: 505 YTLLSNIYAKAGRWEEVGEVRKLMKERGIKTTPGTSIIDLGRGEVHKFIIGDGSHPQVKD 564

Query: 598 I 598
           I
Sbjct: 565 I 565



 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 99/381 (25%), Positives = 174/381 (45%), Gaps = 52/381 (13%)

Query: 14  LTSSITKYSKRGFIDEAKALFQLMP-QRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERN 72
           L+S+I  Y+  G + EA+ +      + + V +NAM+ G+L+ G +  AR LFE MP+R+
Sbjct: 175 LSSAIRMYASFGRLVEARRILDDKGGEVDAVCWNAMIDGYLRFGEVEAARELFEGMPDRS 234

Query: 73  VVS-WTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMP 131
           ++S W AMI G +  G V  AR+ F+EM ER+ +SW++M+ G I+ G   EA ++F+ M 
Sbjct: 235 MISTWNAMISGFSRCGMVEVAREFFDEMKERDEISWSAMIDGYIQEGCFMEALEIFHQMQ 294

Query: 132 IKNVISWNAMIAGYVECCM------MGEAIVLFEEME--ERNVVTWTSMISGYCRAGEVE 183
            + +     ++   +  C        G  I  + +    + + V  TS++  Y + G ++
Sbjct: 295 KEKIRPRKFVLPSVLSACANLGALDQGRWIHTYAKRNSIQLDGVLGTSLVDMYAKCGRID 354

Query: 184 EGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMIN 243
             + +F +M  K V SW AMIGG A +G                                
Sbjct: 355 LAWEVFEKMSNKEVSSWNAMIGGLAMHG-------------------------------- 382

Query: 244 GYIRFGRLEEAQNLFDTVPVR-DEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTA 302
                 R E+A +LF  + +  +EI++  +++     G V     +F++M     V    
Sbjct: 383 ------RAEDAIDLFSKMDINPNEITFVGVLNACAHGGLVQKGLTIFNSMRKEYGVEPQI 436

Query: 303 MISGLVQNELFVEATYLFMEMRAHGVP--PLNATFSVLFGAAGATANIDLGRQIHCVLMK 360
              G + + L         E     +P  P  A +  L GA     N++LG ++  +L++
Sbjct: 437 EHYGCIVDLLGRAGLLTEAEKVVSSIPTEPTPAVWGALLGACRKHGNVELGERVGKILLE 496

Query: 361 TESESDLILENCLISMYAKCG 381
            E ++       L ++YAK G
Sbjct: 497 LEPQNSGRY-TLLSNIYAKAG 516



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 55/203 (27%), Positives = 98/203 (48%), Gaps = 21/203 (10%)

Query: 8   KSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEE 67
           +S++    + I+ +S+ G ++ A+  F  M +R+ +S++AM+ G++Q G   EA  +F +
Sbjct: 233 RSMISTWNAMISGFSRCGMVEVAREFFDEMKERDEISWSAMIDGYIQEGCFMEALEIFHQ 292

Query: 68  M------PERNVVSWTAMIC---GLADAGRVCEARKLFEEMPERNVVSWN-----SMVVG 113
           M      P + V+      C   G  D GR            +RN +  +     S+V  
Sbjct: 293 MQKEKIRPRKFVLPSVLSACANLGALDQGR------WIHTYAKRNSIQLDGVLGTSLVDM 346

Query: 114 LIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEME-ERNVVTWTSM 172
             + G ++ A +VF  M  K V SWNAMI G        +AI LF +M+   N +T+  +
Sbjct: 347 YAKCGRIDLAWEVFEKMSNKEVSSWNAMIGGLAMHGRAEDAIDLFSKMDINPNEITFVGV 406

Query: 173 ISGYCRAGEVEEGYCLFRRMPRK 195
           ++     G V++G  +F  M ++
Sbjct: 407 LNACAHGGLVQKGLTIFNSMRKE 429



 Score = 43.9 bits (102), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 36/170 (21%), Positives = 74/170 (43%), Gaps = 8/170 (4%)

Query: 345 TANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGV-----IDNAYNIFSNMVSRDLV 399
           T ++   +Q H ++++T    D  +   L+  YA          +++  +F  +   ++ 
Sbjct: 44  TTSLHHLKQAHALILRTGHLQDSYIAGSLVKSYANVSTNRYLSFESSLRVFDFVRKPNVF 103

Query: 400 SWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAM 459
            WN M+     +    + + ++  M+ +   PN  T+  +L ACS AG+V+ G ++   +
Sbjct: 104 LWNCMIKVCIENNEPFKAILLYYEMMVAHFRPNKYTYPAVLKACSDAGVVAEGVQVHAHL 163

Query: 460 FDVYKIQPGPEHYV-SMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALL 508
             V     G  H + S I +    G++ EA   +     E D   W A++
Sbjct: 164 --VKHGLGGDGHILSSAIRMYASFGRLVEARRILDDKGGEVDAVCWNAMI 211


>gi|347954522|gb|AEP33761.1| organelle transcript processing 82, partial [Crucihimalaya
           wallichii]
          Length = 710

 Score =  291 bits (745), Expect = 8e-76,   Method: Compositional matrix adjust.
 Identities = 183/558 (32%), Positives = 292/558 (52%), Gaps = 24/558 (4%)

Query: 58  LSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPE----RNVVSWNSMVVG 113
           L  A  +FE + E N++ W  M  G A +     A  L+  M       N  ++  ++  
Sbjct: 53  LPYAISVFETIQEPNLLIWNTMFRGHALSSDPVSALYLYVCMISLGLLPNCYTFPFLLKS 112

Query: 114 LIRNGELNEARKVFNSMPIK-----NVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVT 168
             ++    E +++   + +K     ++    ++I+ YV+   + +A  +F++   R+VV+
Sbjct: 113 CAKSKAFREGQQIHGHV-LKLGYDLDLYVHTSLISMYVQNGRLEDARKVFDQSSHRDVVS 171

Query: 169 WTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICD 228
           +T++I+GY   G +     +F  +P K+VVSW AMI G+A  G +KE+L LF EM     
Sbjct: 172 YTALITGYASKGYIASAQKMFDEIPIKDVVSWNAMISGYAETGNNKEALELFKEMMKTNV 231

Query: 229 NGNNCNVQSCNSMI--NGYIRFGRLEEAQNLFDTVPVRDEISWT-SMIDGYLSVGQVSNA 285
             +   + S  S    +  I  GR  +  +  D       +    ++ID Y+  G+V  A
Sbjct: 232 RPDESTMVSVVSACAQSASIELGR--QVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETA 289

Query: 286 YYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGAT 345
             LF  +  +D ++W  +I G     L+ EA  LF EM   G  P + T   +  A    
Sbjct: 290 CGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSILPACAHL 349

Query: 346 ANIDLGRQIHCVLMK-----TESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVS 400
             I++GR IH  + K       + S       LI MYAKCG I+ A  +F ++++R L S
Sbjct: 350 GAIEIGRWIHVYINKRLKGVANASSH---RTSLIDMYAKCGDIEAAQQVFDSILNRSLSS 406

Query: 401 WNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMF 460
           WN+M+ GF+ HG AN    +F  M ++   P+ +TF+G+LSACSH+G++  G  +F +M 
Sbjct: 407 WNAMIFGFAMHGRANAAFDIFSRMRKNEIEPDDITFVGLLSACSHSGMLDLGRHIFRSMK 466

Query: 461 DVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEI 520
           + YKI P  EHY  MI+LLG +G  KEAEE +  +  EPD  IW +LL AC     N E+
Sbjct: 467 EDYKITPKLEHYGCMIDLLGHSGLFKEAEEMINTMEMEPDGVIWCSLLKACKM-YANVEL 525

Query: 521 AEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNG 580
            E  A+ L++++P N  ++V+L NIYA +GR  E  K+R  +  KG++KVPGCS +  + 
Sbjct: 526 GESYAQNLIKIEPKNPGSYVLLSNIYATAGRWNEVAKIRALLNDKGMKKVPGCSSIEIDS 585

Query: 581 GIQMFLSGDKIPAQVAEI 598
            +  F+ GDK   +  EI
Sbjct: 586 VVHEFIIGDKFHPRNREI 603



 Score =  184 bits (467), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 115/396 (29%), Positives = 207/396 (52%), Gaps = 16/396 (4%)

Query: 108 NSMVVGLIRNGELNEARKVFNSMPIKNVI-SWNAMIAGYVECCMMGE-------AIVLFE 159
           N   + L+ N +  ++ ++ ++  IK  + + N  ++  +E C++         AI +FE
Sbjct: 2   NHPSLSLLHNCKTLQSLRMIHAQMIKTGLHNTNYALSKLIEFCVLSPHFDGLPYAISVFE 61

Query: 160 EMEERNVVTWTSMISGYCRAGE-VEEGY---CLFRRMPRKNVVSWTAMIGGFAWNGFHKE 215
            ++E N++ W +M  G+  + + V   Y   C+       N  ++  ++   A +   +E
Sbjct: 62  TIQEPNLLIWNTMFRGHALSSDPVSALYLYVCMISLGLLPNCYTFPFLLKSCAKSKAFRE 121

Query: 216 SLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDG 275
              +   +  +   G + ++    S+I+ Y++ GRLE+A+ +FD    RD +S+T++I G
Sbjct: 122 GQQIHGHVLKL---GYDLDLYVHTSLISMYVQNGRLEDARKVFDQSSHRDVVSYTALITG 178

Query: 276 YLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATF 335
           Y S G +++A  +F  +P +D V+W AMISG  +     EA  LF EM    V P  +T 
Sbjct: 179 YASKGYIASAQKMFDEIPIKDVVSWNAMISGYAETGNNKEALELFKEMMKTNVRPDESTM 238

Query: 336 SVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVS 395
             +  A   +A+I+LGRQ+H  +      S+L + N LI +Y KCG ++ A  +F  +  
Sbjct: 239 VSVVSACAQSASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETACGLFEGLSY 298

Query: 396 RDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRG-WE 454
           +D++SWN+++ G++H  L  E L +F+ ML SG  PN VT L IL AC+H G +  G W 
Sbjct: 299 KDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSILPACAHLGAIEIGRWI 358

Query: 455 LFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEE 490
                  +  +     H  S+I++  + G I+ A++
Sbjct: 359 HVYINKRLKGVANASSHRTSLIDMYAKCGDIEAAQQ 394



 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 116/377 (30%), Positives = 188/377 (49%), Gaps = 19/377 (5%)

Query: 45  YNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNV 104
           + +++S ++QNGRL +AR++F++   R+VVS+TA+I G A  G +  A+K+F+E+P ++V
Sbjct: 141 HTSLISMYVQNGRLEDARKVFDQSSHRDVVSYTALITGYASKGYIASAQKMFDEIPIKDV 200

Query: 105 VSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEE- 163
           VSWN+M+ G    G   EA ++F  M   NV    + +   V  C    +I L  ++   
Sbjct: 201 VSWNAMISGYAETGNNKEALELFKEMMKTNVRPDESTMVSVVSACAQSASIELGRQVHSW 260

Query: 164 -------RNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKES 216
                   N+    ++I  Y + GEVE    LF  +  K+V+SW  +IGG+     +KE+
Sbjct: 261 IDDHGFGSNLKIVNALIDLYIKCGEVETACGLFEGLSYKDVISWNTLIGGYTHMNLYKEA 320

Query: 217 LLLFIEMKGICDNGNNCNVQS----CNSMINGYIRFGRLEEAQNLFDTVPVRDEISW-TS 271
           LLLF EM    ++ N+  + S    C  +  G I  GR            V +  S  TS
Sbjct: 321 LLLFQEMLRSGESPNDVTMLSILPACAHL--GAIEIGRWIHVYINKRLKGVANASSHRTS 378

Query: 272 MIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPL 331
           +ID Y   G +  A  +F ++ +R   +W AMI G   +     A  +F  MR + + P 
Sbjct: 379 LIDMYAKCGDIEAAQQVFDSILNRSLSSWNAMIFGFAMHGRANAAFDIFSRMRKNEIEPD 438

Query: 332 NATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILEN--CLISMYAKCGVIDNAYNI 389
           + TF  L  A   +  +DLGR I    MK + +    LE+  C+I +    G+   A  +
Sbjct: 439 DITFVGLLSACSHSGMLDLGRHIF-RSMKEDYKITPKLEHYGCMIDLLGHSGLFKEAEEM 497

Query: 390 FSNM-VSRDLVSWNSMV 405
            + M +  D V W S++
Sbjct: 498 INTMEMEPDGVIWCSLL 514


>gi|345505220|gb|AEN99834.1| chlororespiratory reduction 4 [Draba nemorosa]
          Length = 612

 Score =  291 bits (744), Expect = 8e-76,   Method: Compositional matrix adjust.
 Identities = 164/482 (34%), Positives = 254/482 (52%), Gaps = 46/482 (9%)

Query: 111 VVGL-IRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEM--EERNVV 167
           ++GL I+ G L  AR+VF+ MP ++ +S+N+MI GYV+C M+  A  LF+ M  E++N++
Sbjct: 162 LIGLYIKCGCLGYARQVFDRMPRRDSVSYNSMIDGYVKCGMIESARGLFDLMPKEKKNLI 221

Query: 168 TWTSMISGYC-RAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGI 226
           +W  MISGY  RA  V     LF  MP K+++SW                          
Sbjct: 222 SWNFMISGYAQRADGVNVAKKLFDEMPEKDLISW-------------------------- 255

Query: 227 CDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAY 286
                       NS+I+GY++ GR+E+A++LF+ +P RD ++W +M+DGY  +G V  A 
Sbjct: 256 ------------NSLIDGYVKHGRMEDAKSLFNKMPKRDVVTWATMVDGYAKLGFVHQAK 303

Query: 287 YLFHNMPDRDAVAWTAMISGLVQNELFVEATYLF--MEMRAHGVPPLNATFSVLFGAAGA 344
            LF  MP RD VA+ +MI+G VQN    EA  +F  ME  +H + P   T  ++  A   
Sbjct: 304 SLFDRMPLRDVVAYNSMITGYVQNRYHKEAIGIFNDMEKESH-LSPDETTLVIVLSAIAQ 362

Query: 345 TANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSM 404
              +     IH  +M  +      L   LI  Y+KCG I  +  +F  + ++ +  WN+M
Sbjct: 363 LGRLSKAVDIHLYIMDNKFRLGGKLGVALIDTYSKCGSIQKSMRVFEEIENKSIDHWNAM 422

Query: 405 VMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYK 464
           + G + HGL      +   + +    P+ +TF+G+L+ACSH+GLV  G   F  M   +K
Sbjct: 423 IGGLAIHGLGESAFDMLLQIEKRSIKPDDITFIGVLNACSHSGLVKEGLLCFELMRRKHK 482

Query: 465 IQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHA 524
           I+P  +HY  M+++L R+G I+ A+  +  +P EP+  IW   L AC       E  E  
Sbjct: 483 IEPKLQHYGCMVDILSRSGSIELAKNLIEEMPIEPNDVIWRTFLTACS-NHKEFETGELV 541

Query: 525 AKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQM 584
           AK L      N  + V+L N+YA+ G   E  ++R  M  + +RK+PGCSW+  +G +  
Sbjct: 542 AKHLFLQGGYNPSSFVLLSNMYASFGMWKEVRRVRTTMKERKLRKIPGCSWIELDGNVHE 601

Query: 585 FL 586
           F 
Sbjct: 602 FF 603



 Score =  186 bits (473), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 122/437 (27%), Positives = 230/437 (52%), Gaps = 20/437 (4%)

Query: 22  SKRGFIDEAKALFQLMPQRNVVS----YNAMLSGFLQNGRLSEARRLFEEMPERNVVSWT 77
           S+ GF+ E   +   + +  + S     N ++  +++ G L  AR++F+ MP R+ VS+ 
Sbjct: 132 SRLGFVKEGMQIHGFLRKTGIWSDLYLQNCLIGLYIKCGCLGYARQVFDRMPRRDSVSYN 191

Query: 78  AMICGLADAGRVCEARKLFEEMP--ERNVVSWNSMVVGLIRNGE-LNEARKVFNSMPIKN 134
           +MI G    G +  AR LF+ MP  ++N++SWN M+ G  +  + +N A+K+F+ MP K+
Sbjct: 192 SMIDGYVKCGMIESARGLFDLMPKEKKNLISWNFMISGYAQRADGVNVAKKLFDEMPEKD 251

Query: 135 VISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPR 194
           +ISWN++I GYV+   M +A  LF +M +R+VVTW +M+ GY + G V +   LF RMP 
Sbjct: 252 LISWNSLIDGYVKHGRMEDAKSLFNKMPKRDVVTWATMVDGYAKLGFVHQAKSLFDRMPL 311

Query: 195 KNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEA 254
           ++VV++ +MI G+  N +HKE++ +F +M+   ++  + +  +   +++   + GRL +A
Sbjct: 312 RDVVAYNSMITGYVQNRYHKEAIGIFNDMEK--ESHLSPDETTLVIVLSAIAQLGRLSKA 369

Query: 255 QN----LFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQN 310
            +    + D           ++ID Y   G +  +  +F  + ++    W AMI GL  +
Sbjct: 370 VDIHLYIMDNKFRLGGKLGVALIDTYSKCGSIQKSMRVFEEIENKSIDHWNAMIGGLAIH 429

Query: 311 ELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCV-LMKTESESDLIL 369
            L   A  + +++    + P + TF  +  A   +  +  G  + C  LM+ + + +  L
Sbjct: 430 GLGESAFDMLLQIEKRSIKPDDITFIGVLNACSHSGLVKEG--LLCFELMRRKHKIEPKL 487

Query: 370 EN--CLISMYAKCGVIDNAYNIFSNM-VSRDLVSWNSMVMGFSHHG-LANETLKVFESML 425
           ++  C++ + ++ G I+ A N+   M +  + V W + +   S+H       L      L
Sbjct: 488 QHYGCMVDILSRSGSIELAKNLIEEMPIEPNDVIWRTFLTACSNHKEFETGELVAKHLFL 547

Query: 426 ESGTHPNSVTFLGILSA 442
           + G +P+S   L  + A
Sbjct: 548 QGGYNPSSFVLLSNMYA 564



 Score =  132 bits (331), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 78/302 (25%), Positives = 160/302 (52%), Gaps = 48/302 (15%)

Query: 18  ITKYSKRGF-IDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSW 76
           I+ Y++R   ++ AK LF  MP+++++S+N+++ G++++GR+ +A+ LF +MP+R+VV+W
Sbjct: 227 ISGYAQRADGVNVAKKLFDEMPEKDLISWNSLIDGYVKHGRMEDAKSLFNKMPKRDVVTW 286

Query: 77  TAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVI 136
             M+ G A  G V +A+ LF+ MP R+VV++NSM+ G ++N    EA  +FN M  ++ +
Sbjct: 287 ATMVDGYAKLGFVHQAKSLFDRMPLRDVVAYNSMITGYVQNRYHKEAIGIFNDMEKESHL 346

Query: 137 SWN----------------------------------------AMIAGYVECCMMGEAIV 156
           S +                                        A+I  Y +C  + +++ 
Sbjct: 347 SPDETTLVIVLSAIAQLGRLSKAVDIHLYIMDNKFRLGGKLGVALIDTYSKCGSIQKSMR 406

Query: 157 LFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNV----VSWTAMIGGFAWNGF 212
           +FEE+E +++  W +MI G    G  E  + +  ++ ++++    +++  ++   + +G 
Sbjct: 407 VFEEIENKSIDHWNAMIGGLAIHGLGESAFDMLLQIEKRSIKPDDITFIGVLNACSHSGL 466

Query: 213 HKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVR-DEISWTS 271
            KE LL F  M+    +     +Q    M++   R G +E A+NL + +P+  +++ W +
Sbjct: 467 VKEGLLCFELMRR--KHKIEPKLQHYGCMVDILSRSGSIELAKNLIEEMPIEPNDVIWRT 524

Query: 272 MI 273
            +
Sbjct: 525 FL 526



 Score = 85.9 bits (211), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 90/344 (26%), Positives = 149/344 (43%), Gaps = 23/344 (6%)

Query: 221 IEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVG 280
           I++ G C N  + N      + NG+I+        NL   + +    S  S +  +    
Sbjct: 18  IKLLGSCKNSEDVNKIHARLITNGFIK------NPNLTTRIVLDFADSRRSYLAEFARF- 70

Query: 281 QVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFG 340
            V + Y++  N    D   W A+I          +A  LF  M   GV     + S++  
Sbjct: 71  -VFHEYHVCSNGDFEDPFLWNAVIKSHSHGLDPRKALLLFCLMLETGVSVDKFSLSLVLK 129

Query: 341 AAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVS 400
           A      +  G QIH  L KT   SDL L+NCLI +Y KCG +  A  +F  M  RD VS
Sbjct: 130 ACSRLGFVKEGMQIHGFLRKTGIWSDLYLQNCLIGLYIKCGCLGYARQVFDRMPRRDSVS 189

Query: 401 WNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMF 460
           +NSM+ G+   G+      +F+ M +   +  S  F+ I      A  V+   +LF+ M 
Sbjct: 190 YNSMIDGYVKCGMIESARGLFDLMPKEKKNLISWNFM-ISGYAQRADGVNVAKKLFDEMP 248

Query: 461 DVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEI 520
           +   I      + S+I+   + G++++A+    ++P + D   W  ++      +G A++
Sbjct: 249 EKDLIS-----WNSLIDGYVKHGRMEDAKSLFNKMP-KRDVVTWATMV------DGYAKL 296

Query: 521 A-EHAAKRLLELDPL-NAPAHVVLCNIYAASGRHVEEHKLRMDM 562
              H AK L +  PL +  A+  +   Y  +  H E   +  DM
Sbjct: 297 GFVHQAKSLFDRMPLRDVVAYNSMITGYVQNRYHKEAIGIFNDM 340


>gi|359481040|ref|XP_002266469.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Vitis vinifera]
          Length = 709

 Score =  291 bits (744), Expect = 9e-76,   Method: Compositional matrix adjust.
 Identities = 145/408 (35%), Positives = 237/408 (58%), Gaps = 10/408 (2%)

Query: 188 LFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIR 247
           +F  MP++++VSW  +I G A NG H+++L++  EM       ++  + S   +   Y+ 
Sbjct: 192 VFEMMPKRDIVSWNTVISGNAQNGMHEDALMMVREMGNADLRPDSFTLSSVLPIFAEYVN 251

Query: 248 FGRLEEA-----QNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTA 302
             + +E      +N +D     D    +S+ID Y    +V ++  +F+ +P  D ++W +
Sbjct: 252 LLKGKEIHGYAIRNGYDA----DVFIGSSLIDMYAKCTRVDDSCRVFYMLPQHDGISWNS 307

Query: 303 MISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTE 362
           +I+G VQN +F E    F +M    + P + +FS +  A      + LG+Q+H  ++++ 
Sbjct: 308 IIAGCVQNGMFDEGLKFFQQMLIAKIKPNHVSFSSIMPACAHLTTLHLGKQLHGYIIRSR 367

Query: 363 SESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFE 422
            + ++ + + L+ MYAKCG I  A  IF  M   D+VSW +M+MG++ HG A + + +F+
Sbjct: 368 FDGNVFIASALVDMYAKCGNIRTARWIFDKMELYDMVSWTAMIMGYALHGHAYDAISLFK 427

Query: 423 SMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRA 482
            M   G  PN V F+ +L+ACSHAGLV   W+ FN+M   Y+I PG EHY ++ +LLGR 
Sbjct: 428 RMEVEGVKPNYVAFMAVLTACSHAGLVDEAWKYFNSMTQDYRIIPGLEHYAAVADLLGRV 487

Query: 483 GKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVL 542
           G+++EA EF+  +  EP   +W  LL AC     N E+AE  +K+L  +DP N  A+V+L
Sbjct: 488 GRLEEAYEFISDMHIEPTGSVWSTLLAACR-VHKNIELAEKVSKKLFTVDPQNIGAYVLL 546

Query: 543 CNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDK 590
            NIY+A+GR  +  KLR+ M  KG++K P CSW+     +  F++GDK
Sbjct: 547 SNIYSAAGRWKDARKLRIAMRDKGMKKKPACSWIEIKNKVHAFVAGDK 594



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 84/322 (26%), Positives = 146/322 (45%), Gaps = 41/322 (12%)

Query: 170 TSMISGYCRAGEVEEGYCLFRRMPRK-NVVSWTAMIGGFAWNGFHKESLLLFIEMKG--- 225
           ++++S Y     + +   +F  +P     ++W ++I  +  +G    SL  FI+M     
Sbjct: 43  STILSIYSNLNLLHDSLLIFNSLPSPPTTLAWKSIIRCYTSHGLFLHSLSFFIQMLASGK 102

Query: 226 -----------------------------ICDNGNNCNVQSCNSMINGYIRFGRLEEA-- 254
                                        I   G   ++ +CN+++N Y +F  LEE   
Sbjct: 103 YPDHNVFPSVLKSCTLMKDLRFGESVHGCIIRLGMGFDLYTCNALMNMYSKFWSLEEVNT 162

Query: 255 -QNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELF 313
            + +FD     D  S       YL  G +     +F  MP RD V+W  +ISG  QN + 
Sbjct: 163 YKKVFDEGKTSDVYSKKEKESYYL--GSLRK---VFEMMPKRDIVSWNTVISGNAQNGMH 217

Query: 314 VEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCL 373
            +A  +  EM    + P + T S +        N+  G++IH   ++   ++D+ + + L
Sbjct: 218 EDALMMVREMGNADLRPDSFTLSSVLPIFAEYVNLLKGKEIHGYAIRNGYDADVFIGSSL 277

Query: 374 ISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNS 433
           I MYAKC  +D++  +F  +   D +SWNS++ G   +G+ +E LK F+ ML +   PN 
Sbjct: 278 IDMYAKCTRVDDSCRVFYMLPQHDGISWNSIIAGCVQNGMFDEGLKFFQQMLIAKIKPNH 337

Query: 434 VTFLGILSACSHAGLVSRGWEL 455
           V+F  I+ AC+H   +  G +L
Sbjct: 338 VSFSSIMPACAHLTTLHLGKQL 359



 Score = 89.0 bits (219), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 72/328 (21%), Positives = 145/328 (44%), Gaps = 59/328 (17%)

Query: 21  YSKRG----FIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEM------PE 70
           YSK+     ++   + +F++MP+R++VS+N ++SG  QNG   +A  +  EM      P+
Sbjct: 176 YSKKEKESYYLGSLRKVFEMMPKRDIVSWNTVISGNAQNGMHEDALMMVREMGNADLRPD 235

Query: 71  R---------------------------------NVVSWTAMICGLADAGRVCEARKLFE 97
                                             +V   +++I   A   RV ++ ++F 
Sbjct: 236 SFTLSSVLPIFAEYVNLLKGKEIHGYAIRNGYDADVFIGSSLIDMYAKCTRVDDSCRVFY 295

Query: 98  EMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVL 157
            +P+ + +SWNS++ G ++NG  +E  K F  M I  +   +   +  +  C     + L
Sbjct: 296 MLPQHDGISWNSIIAGCVQNGMFDEGLKFFQQMLIAKIKPNHVSFSSIMPACAHLTTLHL 355

Query: 158 FEEME--------ERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAW 209
            +++         + NV   ++++  Y + G +     +F +M   ++VSWTAMI G+A 
Sbjct: 356 GKQLHGYIIRSRFDGNVFIASALVDMYAKCGNIRTARWIFDKMELYDMVSWTAMIMGYAL 415

Query: 210 NGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEI-- 267
           +G   +++ LF  M+     G   N  +  +++      G ++EA   F+++     I  
Sbjct: 416 HGHAYDAISLFKRMEV---EGVKPNYVAFMAVLTACSHAGLVDEAWKYFNSMTQDYRIIP 472

Query: 268 ---SWTSMIDGYLSVGQVSNAYYLFHNM 292
               + ++ D    VG++  AY    +M
Sbjct: 473 GLEHYAAVADLLGRVGRLEEAYEFISDM 500



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 51/192 (26%), Positives = 102/192 (53%), Gaps = 12/192 (6%)

Query: 15  TSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEM----PE 70
           +S I  Y+K   +D++  +F ++PQ + +S+N++++G +QNG   E  + F++M     +
Sbjct: 275 SSLIDMYAKCTRVDDSCRVFYMLPQHDGISWNSIIAGCVQNGMFDEGLKFFQQMLIAKIK 334

Query: 71  RNVVSWTAMICGLADAGRVCEARKL----FEEMPERNVVSWNSMVVGLIRNGELNEARKV 126
            N VS+++++   A    +   ++L         + NV   +++V    + G +  AR +
Sbjct: 335 PNHVSFSSIMPACAHLTTLHLGKQLHGYIIRSRFDGNVFIASALVDMYAKCGNIRTARWI 394

Query: 127 FNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEME----ERNVVTWTSMISGYCRAGEV 182
           F+ M + +++SW AMI GY       +AI LF+ ME    + N V + ++++    AG V
Sbjct: 395 FDKMELYDMVSWTAMIMGYALHGHAYDAISLFKRMEVEGVKPNYVAFMAVLTACSHAGLV 454

Query: 183 EEGYCLFRRMPR 194
           +E +  F  M +
Sbjct: 455 DEAWKYFNSMTQ 466



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 59/293 (20%), Positives = 127/293 (43%), Gaps = 42/293 (14%)

Query: 253 EAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDR-DAVAWTAMISGLVQNE 311
            AQ L  ++P    +S  +++  Y ++  + ++  +F+++P     +AW ++I     + 
Sbjct: 28  HAQILRTSLPSPSLLS--TILSIYSNLNLLHDSLLIFNSLPSPPTTLAWKSIIRCYTSHG 85

Query: 312 LFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILEN 371
           LF+ +   F++M A G  P +  F  +  +     ++  G  +H  +++     DL   N
Sbjct: 86  LFLHSLSFFIQMLASGKYPDHNVFPSVLKSCTLMKDLRFGESVHGCIIRLGMGFDLYTCN 145

Query: 372 CLISMYAKC---------------GVIDNAYN--------------IFSNMVSRDLVSWN 402
            L++MY+K                G   + Y+              +F  M  RD+VSWN
Sbjct: 146 ALMNMYSKFWSLEEVNTYKKVFDEGKTSDVYSKKEKESYYLGSLRKVFEMMPKRDIVSWN 205

Query: 403 SMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDV 462
           +++ G + +G+  + L +   M  +   P+S T   +L   +    + +G E+       
Sbjct: 206 TVISGNAQNGMHEDALMMVREMGNADLRPDSFTLSSVLPIFAEYVNLLKGKEIHG----- 260

Query: 463 YKIQPGPEHYV----SMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGAC 511
           Y I+ G +  V    S+I++  +  ++ ++      LP + D   W +++  C
Sbjct: 261 YAIRNGYDADVFIGSSLIDMYAKCTRVDDSCRVFYMLP-QHDGISWNSIIAGC 312


>gi|356503988|ref|XP_003520781.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Glycine max]
          Length = 771

 Score =  291 bits (744), Expect = 9e-76,   Method: Compositional matrix adjust.
 Identities = 169/513 (32%), Positives = 270/513 (52%), Gaps = 22/513 (4%)

Query: 100 PERNVVSWNSMVVGLIRNGELNEARKVFNSMPIK----NVISWNAMIAGYVECCMMGEAI 155
           P  NVV+W +++  L R+ +  +A   FN M       N  +++A++       ++ E  
Sbjct: 161 PSTNVVTWTTLINQLSRSNKPFQALTFFNRMRTTGIYPNHFTFSAILPACAHAALLSEGQ 220

Query: 156 VLFEEMEER----NVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNG 211
            +   + +     +    T+++  Y + G +     +F  MP +N+VSW +MI GF  N 
Sbjct: 221 QIHALIHKHCFLNDPFVATALLDMYAKCGSMLLAENVFDEMPHRNLVSWNSMIVGFVKNK 280

Query: 212 FHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIR--FGRLEEA----QNLFDTVPVRD 265
            +  ++ +F E+  +    +  ++ S  S   G +   FG+        + L   V V++
Sbjct: 281 LYGRAIGVFREVLSL--GPDQVSISSVLSACAGLVELDFGKQVHGSIVKRGLVGLVYVKN 338

Query: 266 EISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRA 325
                S++D Y   G   +A  LF    DRD V W  MI G  +   F +A   F  M  
Sbjct: 339 -----SLVDMYCKCGLFEDATKLFCGGGDRDVVTWNVMIMGCFRCRNFEQACTYFQAMIR 393

Query: 326 HGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDN 385
            GV P  A++S LF A+ + A +  G  IH  ++KT    +  + + L++MY KCG + +
Sbjct: 394 EGVEPDEASYSSLFHASASIAALTQGTMIHSHVLKTGHVKNSRISSSLVTMYGKCGSMLD 453

Query: 386 AYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSH 445
           AY +F      ++V W +M+  F  HG ANE +K+FE ML  G  P  +TF+ +LSACSH
Sbjct: 454 AYQVFRETKEHNVVCWTAMITVFHQHGCANEAIKLFEEMLNEGVVPEYITFVSVLSACSH 513

Query: 446 AGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWG 505
            G +  G++ FN+M +V+ I+PG EHY  M++LLGR G+++EA  F+  +PFEPD  +WG
Sbjct: 514 TGKIDDGFKYFNSMANVHNIKPGLEHYACMVDLLGRVGRLEEACRFIESMPFEPDSLVWG 573

Query: 506 ALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLK 565
           ALLGACG    N E+    A+RL +L+P N   +++L NIY   G   E  ++R  MG+ 
Sbjct: 574 ALLGACGK-HANVEMGREVAERLFKLEPDNPGNYMLLSNIYIRHGMLEEADEVRRLMGIN 632

Query: 566 GVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
           GVRK  GCSW+       +F + D+  ++  EI
Sbjct: 633 GVRKESGCSWIDVKNRTFVFNANDRSHSRTQEI 665



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 128/511 (25%), Positives = 212/511 (41%), Gaps = 72/511 (14%)

Query: 6   HPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQR----NVVSYNAMLSGFLQNGRLSEA 61
           HP + VV  T+ I + S+     +A   F  M       N  +++A+L        LSE 
Sbjct: 160 HPSTNVVTWTTLINQLSRSNKPFQALTFFNRMRTTGIYPNHFTFSAILPACAHAALLSEG 219

Query: 62  RRLFEEMPERNVVS----WTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRN 117
           +++   + +   ++     TA++   A  G +  A  +F+EMP RN+VSWNSM+VG ++N
Sbjct: 220 QQIHALIHKHCFLNDPFVATALLDMYAKCGSMLLAENVFDEMPHRNLVSWNSMIVGFVKN 279

Query: 118 GELNEARKVF--------NSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVV-- 167
                A  VF        + + I +V+S     AG VE   +     +   + +R +V  
Sbjct: 280 KLYGRAIGVFREVLSLGPDQVSISSVLS---ACAGLVE---LDFGKQVHGSIVKRGLVGL 333

Query: 168 --TWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMI-GGFAWNGFHKESLLLFIEMK 224
                S++  YC+ G  E+   LF     ++VV+W  MI G F    F +         +
Sbjct: 334 VYVKNSLVDMYCKCGLFEDATKLFCGGGDRDVVTWNVMIMGCFRCRNFEQACTYF----Q 389

Query: 225 GICDNGNNCNVQSCNSMINGYIRFGRLEEA----QNLFDTVPVRDEISWTSMIDGYLSVG 280
            +   G   +  S +S+ +       L +      ++  T  V++    +S++  Y   G
Sbjct: 390 AMIREGVEPDEASYSSLFHASASIAALTQGTMIHSHVLKTGHVKNSRISSSLVTMYGKCG 449

Query: 281 QVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFG 340
            + +AY +F    + + V WTAMI+   Q+    EA  LF EM   GV P   TF  +  
Sbjct: 450 SMLDAYQVFRETKEHNVVCWTAMITVFHQHGCANEAIKLFEEMLNEGVVPEYITFVSVLS 509

Query: 341 AAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVS 400
           A   T  ID G                         +     + N +NI        L  
Sbjct: 510 ACSHTGKIDDG-------------------------FKYFNSMANVHNI-----KPGLEH 539

Query: 401 WNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMF 460
           +  MV      G   E  +  ESM      P+S+ +  +L AC     V  G E+   +F
Sbjct: 540 YACMVDLLGRVGRLEEACRFIESM---PFEPDSLVWGALLGACGKHANVEMGREVAERLF 596

Query: 461 DVYKIQP-GPEHYVSMINLLGRAGKIKEAEE 490
              K++P  P +Y+ + N+  R G ++EA+E
Sbjct: 597 ---KLEPDNPGNYMLLSNIYIRHGMLEEADE 624



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 49/177 (27%), Positives = 84/177 (47%), Gaps = 8/177 (4%)

Query: 327 GVPPLNATFSV-----LFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCG 381
           GVP  +   SV     L   A    ++    QIH  L+ T + + L   N L+ +YAKCG
Sbjct: 87  GVPKFHQFSSVPDLKHLLNNAAKLKSLKHATQIHSQLVTTNNHASLANINTLLLLYAKCG 146

Query: 382 VIDNAYNIFSNM--VSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGI 439
            I +   +F+     S ++V+W +++   S      + L  F  M  +G +PN  TF  I
Sbjct: 147 SIHHTLLLFNTYPHPSTNVVTWTTLINQLSRSNKPFQALTFFNRMRTTGIYPNHFTFSAI 206

Query: 440 LSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLP 496
           L AC+HA L+S G ++ +A+   +     P    +++++  + G +  AE     +P
Sbjct: 207 LPACAHAALLSEGQQI-HALIHKHCFLNDPFVATALLDMYAKCGSMLLAENVFDEMP 262


>gi|224091939|ref|XP_002309408.1| predicted protein [Populus trichocarpa]
 gi|222855384|gb|EEE92931.1| predicted protein [Populus trichocarpa]
          Length = 547

 Score =  291 bits (744), Expect = 9e-76,   Method: Compositional matrix adjust.
 Identities = 156/413 (37%), Positives = 241/413 (58%), Gaps = 9/413 (2%)

Query: 165 NVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMK 224
           +V   +S+IS Y +  E+     +F  +P +NVVSWTAM+ G+A  G  + +  +F  M 
Sbjct: 139 DVYVGSSLISFYGKCKEILSARKVFDEIPERNVVSWTAMVAGYASVGDLENAKRVFERMP 198

Query: 225 GICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSN 284
                    N+ S N+MI+G  + G L  A+ +FD +  R+ +S+T MIDGY  VG +++
Sbjct: 199 -------ERNLPSWNAMISGLGKAGDLSGARKVFDEMVERNVVSFTVMIDGYAKVGDMAS 251

Query: 285 AYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGA 344
           A  LF   P++D VAW+A+ISG  +NE   EA  +F EM +  V P       L  A   
Sbjct: 252 ARALFDEAPEKDVVAWSALISGYSRNEQPNEAVKIFFEMVSMNVKPDEFIMVSLMSACSQ 311

Query: 345 TANIDLGRQIHCVLMKTESES-DLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNS 403
             N DL + +   L +T  ++    +   LI M+AKCG ++ A  +F +M SRDL+   S
Sbjct: 312 LGNSDLAKWVDSYLSQTSIDTRQAHVLAALIDMHAKCGNMEKAVKLFQDMPSRDLIPCCS 371

Query: 404 MVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVY 463
           ++ G S HG   E +++F  ML+ G  P++V F  IL+ACS  GL+  GW  F+ M + Y
Sbjct: 372 LIQGLSIHGRGVEAVELFNRMLDEGLIPDTVAFTVILTACSRGGLIEDGWHFFDTMKNKY 431

Query: 464 KIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEH 523
            + P P HY  M++LL RAG+++ A + +  +P +P    WGALLGAC    G+ E+ E 
Sbjct: 432 SVVPSPNHYACMVDLLSRAGQLRAAYDLLKSMPLKPHACAWGALLGACKL-HGDVELREE 490

Query: 524 AAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWL 576
            A RLLEL+P  A ++V+L NIYA++ + ++   +R +M  +G+RK+PGCS++
Sbjct: 491 VANRLLELEPEKAGSYVLLSNIYASANQWLDVSIVRDEMKERGIRKIPGCSYI 543



 Score =  172 bits (437), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 113/387 (29%), Positives = 190/387 (49%), Gaps = 39/387 (10%)

Query: 46  NAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVV 105
           ++++S + +   +  AR++F+E+PERNVVSWTAM+ G A  G +  A+++FE MPERN+ 
Sbjct: 144 SSLISFYGKCKEILSARKVFDEIPERNVVSWTAMVAGYASVGDLENAKRVFERMPERNLP 203

Query: 106 SWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERN 165
           SWN+M+ GL + G+L+ ARKVF+ M  +NV+S+  MI GY +   M  A  LF+E  E++
Sbjct: 204 SWNAMISGLGKAGDLSGARKVFDEMVERNVVSFTVMIDGYAKVGDMASARALFDEAPEKD 263

Query: 166 VVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKG 225
           VV W+++ISGY R  +  E   +F  M   NV                K    + + +  
Sbjct: 264 VVAWSALISGYSRNEQPNEAVKIFFEMVSMNV----------------KPDEFIMVSLMS 307

Query: 226 ICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNA 285
            C    N ++      ++ Y+       +Q   DT   R      ++ID +   G +  A
Sbjct: 308 ACSQLGNSDLA---KWVDSYL-------SQTSIDT---RQAHVLAALIDMHAKCGNMEKA 354

Query: 286 YYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGAT 345
             LF +MP RD +   ++I GL  +   VEA  LF  M   G+ P    F+V+  A    
Sbjct: 355 VKLFQDMPSRDLIPCCSLIQGLSIHGRGVEAVELFNRMLDEGLIPDTVAFTVILTACSRG 414

Query: 346 ANIDLGRQIHCVLMKTESESDLILEN-----CLISMYAKCGVIDNAYNIFSNM-VSRDLV 399
             I+ G      +    S    ++ +     C++ + ++ G +  AY++  +M +     
Sbjct: 415 GLIEDGWHFFDTMKNKYS----VVPSPNHYACMVDLLSRAGQLRAAYDLLKSMPLKPHAC 470

Query: 400 SWNSMVMGFSHHGLANETLKVFESMLE 426
           +W +++     HG      +V   +LE
Sbjct: 471 AWGALLGACKLHGDVELREEVANRLLE 497



 Score =  162 bits (409), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 105/336 (31%), Positives = 170/336 (50%), Gaps = 49/336 (14%)

Query: 15  TSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVV 74
           +S I+ Y K   I  A+ +F  +P+RNVVS+ AM++G+   G L  A+R+FE MPERN+ 
Sbjct: 144 SSLISFYGKCKEILSARKVFDEIPERNVVSWTAMVAGYASVGDLENAKRVFERMPERNLP 203

Query: 75  SWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKN 134
           SW AMI GL  AG +  ARK+F+EM ERNVVS+  M+ G  + G++  AR +F+  P K+
Sbjct: 204 SWNAMISGLGKAGDLSGARKVFDEMVERNVVSFTVMIDGYAKVGDMASARALFDEAPEKD 263

Query: 135 VISWNAMIAGYVECCMMGEAIVLFEEMEERNV----------------------VTWT-- 170
           V++W+A+I+GY       EA+ +F EM   NV                        W   
Sbjct: 264 VVAWSALISGYSRNEQPNEAVKIFFEMVSMNVKPDEFIMVSLMSACSQLGNSDLAKWVDS 323

Query: 171 ----------------SMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHK 214
                           ++I  + + G +E+   LF+ MP ++++   ++I G + +G   
Sbjct: 324 YLSQTSIDTRQAHVLAALIDMHAKCGNMEKAVKLFQDMPSRDLIPCCSLIQGLSIHGRGV 383

Query: 215 ESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEI-----SW 269
           E++ LF  M    D G   +  +   ++    R G +E+  + FDT+  +  +      +
Sbjct: 384 EAVELFNRM---LDEGLIPDTVAFTVILTACSRGGLIEDGWHFFDTMKNKYSVVPSPNHY 440

Query: 270 TSMIDGYLSVGQVSNAYYLFHNMPDR-DAVAWTAMI 304
             M+D     GQ+  AY L  +MP +  A AW A++
Sbjct: 441 ACMVDLLSRAGQLRAAYDLLKSMPLKPHACAWGALL 476



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 77/334 (23%), Positives = 140/334 (41%), Gaps = 32/334 (9%)

Query: 272 MIDGYLSVG-QVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPP 330
           +I  +LS+   VS +  +F+ + +     +  ++    +N  F++   LF  M+      
Sbjct: 43  IISHFLSISTSVSYSTSIFNRLLNPSTFLYNILLKIFSKNSQFIDTFSLFYRMKQSEYAL 102

Query: 331 LNA-TFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNI 389
            +  T+ +L         +  G  +H   ++     D+ + + LIS Y KC  I +A  +
Sbjct: 103 SDKYTYPLLIKVCSNELRLKEGEIVHGSAIRCGVSDDVYVGSSLISFYGKCKEILSARKV 162

Query: 390 FSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAG-- 447
           F  +  R++VSW +MV G++  G      +VFE M E      +    G+  A   +G  
Sbjct: 163 FDEIPERNVVSWTAMVAGYASVGDLENAKRVFERMPERNLPSWNAMISGLGKAGDLSGAR 222

Query: 448 -----LVSRGWELFNAMFDVYK-----------IQPGPEHYV----SMINLLGRAGKIKE 487
                +V R    F  M D Y                PE  V    ++I+   R  +  E
Sbjct: 223 KVFDEMVERNVVSFTVMIDGYAKVGDMASARALFDEAPEKDVVAWSALISGYSRNEQPNE 282

Query: 488 AEEF---VLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVV--L 542
           A +    ++ +  +PD  I  +L+ AC    GN+++A+     L +       AHV+  L
Sbjct: 283 AVKIFFEMVSMNVKPDEFIMVSLMSACSQL-GNSDLAKWVDSYLSQTSIDTRQAHVLAAL 341

Query: 543 CNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWL 576
            +++A  G   +  KL  DM  + +  +P CS +
Sbjct: 342 IDMHAKCGNMEKAVKLFQDMPSRDL--IPCCSLI 373


>gi|15242550|ref|NP_196557.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170796|sp|Q9FIB2.1|PP373_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At5g09950
 gi|9758973|dbj|BAB09416.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332004087|gb|AED91470.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 995

 Score =  291 bits (744), Expect = 9e-76,   Method: Compositional matrix adjust.
 Identities = 193/636 (30%), Positives = 323/636 (50%), Gaps = 69/636 (10%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEM-------PE 70
           ++ ++K G +  A+ +F  M  RN V+ N ++ G ++     EA +LF +M       PE
Sbjct: 250 VSAFAKSGSLSYARKVFNQMETRNAVTLNGLMVGLVRQKWGEEATKLFMDMNSMIDVSPE 309

Query: 71  RNVVSWTA----------------------MICGLAD---------------AGRVCEAR 93
             V+  ++                      +  GL D                G + +AR
Sbjct: 310 SYVILLSSFPEYSLAEEVGLKKGREVHGHVITTGLVDFMVGIGNGLVNMYAKCGSIADAR 369

Query: 94  KLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECC---- 149
           ++F  M +++ VSWNSM+ GL +NG   EA + + SM   +++  +  +   +  C    
Sbjct: 370 RVFYFMTDKDSVSWNSMITGLDQNGCFIEAVERYKSMRRHDILPGSFTLISSLSSCASLK 429

Query: 150 -------MMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTA 202
                  + GE++ L  ++   NV    ++++ Y   G + E   +F  MP  + VSW +
Sbjct: 430 WAKLGQQIHGESLKLGIDL---NVSVSNALMTLYAETGYLNECRKIFSSMPEHDQVSWNS 486

Query: 203 MIGGFAWNGFH-KESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRL-EEAQNLFDT 260
           +IG  A +     E+++ F+  +      N     S        + FG L ++   L   
Sbjct: 487 IIGALARSERSLPEAVVCFLNAQRAGQKLNRITFSS-VLSAVSSLSFGELGKQIHGLALK 545

Query: 261 VPVRDE-ISWTSMIDGYLSVGQVSNAYYLFHNMPDR-DAVAWTAMISGLVQNELFVEATY 318
             + DE  +  ++I  Y   G++     +F  M +R D V W +MISG + NEL  +A  
Sbjct: 546 NNIADEATTENALIACYGKCGEMDGCEKIFSRMAERRDNVTWNSMISGYIHNELLAKALD 605

Query: 319 LFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYA 378
           L   M   G    +  ++ +  A  + A ++ G ++H   ++   ESD+++ + L+ MY+
Sbjct: 606 LVWFMLQTGQRLDSFMYATVLSAFASVATLERGMEVHACSVRACLESDVVVGSALVDMYS 665

Query: 379 KCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESM-LESGTHPNSVTFL 437
           KCG +D A   F+ M  R+  SWNSM+ G++ HG   E LK+FE+M L+  T P+ VTF+
Sbjct: 666 KCGRLDYALRFFNTMPVRNSYSWNSMISGYARHGQGEEALKLFETMKLDGQTPPDHVTFV 725

Query: 438 GILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPF 497
           G+LSACSHAGL+  G++ F +M D Y + P  EH+  M ++LGRAG++ + E+F+ ++P 
Sbjct: 726 GVLSACSHAGLLEEGFKHFESMSDSYGLAPRIEHFSCMADVLGRAGELDKLEDFIEKMPM 785

Query: 498 EPDHRIWGALLGACGFCEGN---AEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVE 554
           +P+  IW  +LGAC  C  N   AE+ + AA+ L +L+P NA  +V+L N+YAA GR  +
Sbjct: 786 KPNVLIWRTVLGAC--CRANGRKAELGKKAAEMLFQLEPENAVNYVLLGNMYAAGGRWED 843

Query: 555 EHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDK 590
             K R  M    V+K  G SW+    G+ MF++GDK
Sbjct: 844 LVKARKKMKDADVKKEAGYSWVTMKDGVHMFVAGDK 879



 Score =  145 bits (365), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 136/534 (25%), Positives = 234/534 (43%), Gaps = 81/534 (15%)

Query: 46  NAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVV 105
           + ++S F ++G LS AR++F +M  RN V+   ++ GL       EA KLF +M     V
Sbjct: 247 SGLVSAFAKSGSLSYARKVFNQMETRNAVTLNGLMVGLVRQKWGEEATKLFMDMNSMIDV 306

Query: 106 SWNSMVVGLIRNGE--------LNEARKVFNSMPIKNVISW-----NAMIAGYVECCMMG 152
           S  S V+ L    E        L + R+V   +    ++ +     N ++  Y +C  + 
Sbjct: 307 SPESYVILLSSFPEYSLAEEVGLKKGREVHGHVITTGLVDFMVGIGNGLVNMYAKCGSIA 366

Query: 153 EAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNV-------VSWTAMIG 205
           +A  +F  M +++ V+W SMI+G  + G   E    ++ M R ++       +S  +   
Sbjct: 367 DARRVFYFMTDKDSVSWNSMITGLDQNGCFIEAVERYKSMRRHDILPGSFTLISSLSSCA 426

Query: 206 GFAW----NGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTV 261
              W       H ESL L I++          NV   N+++  Y   G L E + +F ++
Sbjct: 427 SLKWAKLGQQIHGESLKLGIDL----------NVSVSNALMTLYAETGYLNECRKIFSSM 476

Query: 262 PVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFM 321
           P  D++SW S+I G L+  + S        +P                     EA   F+
Sbjct: 477 PEHDQVSWNSII-GALARSERS--------LP---------------------EAVVCFL 506

Query: 322 EMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCG 381
             +  G      TFS +  A  + +  +LG+QIH + +K     +   EN LI+ Y KCG
Sbjct: 507 NAQRAGQKLNRITFSSVLSAVSSLSFGELGKQIHGLALKNNIADEATTENALIACYGKCG 566

Query: 382 VIDNAYNIFSNMVS-RDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGIL 440
            +D    IFS M   RD V+WNSM+ G+ H+ L  + L +   ML++G   +S  +  +L
Sbjct: 567 EMDGCEKIFSRMAERRDNVTWNSMISGYIHNELLAKALDLVWFMLQTGQRLDSFMYATVL 626

Query: 441 SACSHAGLVSRGWELFNAMFDVYKIQPGPEHYV----SMINLLGRAGKIKEAEEFVLRLP 496
           SA +    + RG E+         ++   E  V    +++++  + G++  A  F   +P
Sbjct: 627 SAFASVATLERGMEVHAC-----SVRACLESDVVVGSALVDMYSKCGRLDYALRFFNTMP 681

Query: 497 FEPDHRIWGALLGACGFCEGNAEIAEHAAK--RLLELDPLNAPAHVVLCNIYAA 548
               +  W +++   G+        E A K    ++LD    P HV    + +A
Sbjct: 682 VRNSYS-WNSMIS--GYARHGQ--GEEALKLFETMKLDGQTPPDHVTFVGVLSA 730



 Score =  142 bits (358), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 124/475 (26%), Positives = 210/475 (44%), Gaps = 37/475 (7%)

Query: 63  RLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNE 122
           RL++   +++V     +I    + G    ARK+F+EMP RN VSW  +V G  RNGE  E
Sbjct: 26  RLYKNRLDKDVYLCNNLINAYLETGDSVSARKVFDEMPLRNCVSWACIVSGYSRNGEHKE 85

Query: 123 ARKVFNSMPIKNVISWNAMIAGYVECC--------MMGEAI--VLFEEMEERNVVTWTSM 172
           A      M  + + S        +  C        + G  I  ++F+     + V    +
Sbjct: 86  ALVFLRDMVKEGIFSNQYAFVSVLRACQEIGSVGILFGRQIHGLMFKLSYAVDAVVSNVL 145

Query: 173 ISGYCRA-GEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGN 231
           IS Y +  G V    C F  +  KN VSW ++I  ++  G  + +  +F  M+       
Sbjct: 146 ISMYWKCIGSVGYALCAFGDIEVKNSVSWNSIISVYSQAGDQRSAFRIFSSMQYDGSRPT 205

Query: 232 NCN----VQSCNSMINGYIRFGRLEEAQ-NLFDTVPVRDEISWTSMIDGYLSVGQVSNAY 286
                  V +  S+    +R   LE+    +  +  + D    + ++  +   G +S A 
Sbjct: 206 EYTFGSLVTTACSLTEPDVRL--LEQIMCTIQKSGLLTDLFVGSGLVSAFAKSGSLSYAR 263

Query: 287 YLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAH-GVPPLNATFSVLFG----- 340
            +F+ M  R+AV    ++ GLV+ +   EAT LFM+M +   V P   ++ +L       
Sbjct: 264 KVFNQMETRNAVTLNGLMVGLVRQKWGEEATKLFMDMNSMIDVSP--ESYVILLSSFPEY 321

Query: 341 AAGATANIDLGRQIHCVLMKTESESDLI-LENCLISMYAKCGVIDNAYNIFSNMVSRDLV 399
           +      +  GR++H  ++ T     ++ + N L++MYAKCG I +A  +F  M  +D V
Sbjct: 322 SLAEEVGLKKGREVHGHVITTGLVDFMVGIGNGLVNMYAKCGSIADARRVFYFMTDKDSV 381

Query: 400 SWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAM 459
           SWNSM+ G   +G   E ++ ++SM      P S T +  LS+C+     S  W      
Sbjct: 382 SWNSMITGLDQNGCFIEAVERYKSMRRHDILPGSFTLISSLSSCA-----SLKWAKLGQQ 436

Query: 460 FDVYKIQPGPEHYVSMIN----LLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGA 510
                ++ G +  VS+ N    L    G + E  +    +P E D   W +++GA
Sbjct: 437 IHGESLKLGIDLNVSVSNALMTLYAETGYLNECRKIFSSMP-EHDQVSWNSIIGA 490



 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 129/557 (23%), Positives = 242/557 (43%), Gaps = 74/557 (13%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVS-- 75
           I  Y + G    A+ +F  MP RN VS+  ++SG+ +NG   EA     +M +  + S  
Sbjct: 43  INAYLETGDSVSARKVFDEMPLRNCVSWACIVSGYSRNGEHKEALVFLRDMVKEGIFSNQ 102

Query: 76  -------------------WTAMICGL-------ADA--------------GRVCEARKL 95
                              +   I GL        DA              G V  A   
Sbjct: 103 YAFVSVLRACQEIGSVGILFGRQIHGLMFKLSYAVDAVVSNVLISMYWKCIGSVGYALCA 162

Query: 96  FEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVE--CCMMGE 153
           F ++  +N VSWNS++    + G+   A ++F+SM               V   C +   
Sbjct: 163 FGDIEVKNSVSWNSIISVYSQAGDQRSAFRIFSSMQYDGSRPTEYTFGSLVTTACSLTEP 222

Query: 154 AIVLFEEM----EERNVVT----WTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIG 205
            + L E++    ++  ++T     + ++S + ++G +     +F +M  +N V+   ++ 
Sbjct: 223 DVRLLEQIMCTIQKSGLLTDLFVGSGLVSAFAKSGSLSYARKVFNQMETRNAVTLNGLMV 282

Query: 206 GFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRD 265
           G     + +E+  LF++M  + D     + +S   +++ +  +   EE   L     V  
Sbjct: 283 GLVRQKWGEEATKLFMDMNSMID----VSPESYVILLSSFPEYSLAEEV-GLKKGREVHG 337

Query: 266 EISWTSMIDG-----------YLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFV 314
            +  T ++D            Y   G +++A  +F+ M D+D+V+W +MI+GL QN  F+
Sbjct: 338 HVITTGLVDFMVGIGNGLVNMYAKCGSIADARRVFYFMTDKDSVSWNSMITGLDQNGCFI 397

Query: 315 EATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLI 374
           EA   +  MR H + P + T      +  +     LG+QIH   +K   + ++ + N L+
Sbjct: 398 EAVERYKSMRRHDILPGSFTLISSLSSCASLKWAKLGQQIHGESLKLGIDLNVSVSNALM 457

Query: 375 SMYAKCGVIDNAYNIFSNMVSRDLVSWNSMV--MGFSHHGLANETLKVFESMLESGTHPN 432
           ++YA+ G ++    IFS+M   D VSWNS++  +  S   L  E +  F +   +G   N
Sbjct: 458 TLYAETGYLNECRKIFSSMPEHDQVSWNSIIGALARSERSLP-EAVVCFLNAQRAGQKLN 516

Query: 433 SVTFLGILSACSHAGLVSRGWELFN-AMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEF 491
            +TF  +LSA S       G ++   A+ +    +   E+  ++I   G+ G++   E+ 
Sbjct: 517 RITFSSVLSAVSSLSFGELGKQIHGLALKNNIADEATTEN--ALIACYGKCGEMDGCEKI 574

Query: 492 VLRLPFEPDHRIWGALL 508
             R+    D+  W +++
Sbjct: 575 FSRMAERRDNVTWNSMI 591



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 65/214 (30%), Positives = 101/214 (47%), Gaps = 9/214 (4%)

Query: 235 VQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPD 294
           VQSC     G  RF      +N  D    +D     ++I+ YL  G   +A  +F  MP 
Sbjct: 10  VQSCVGH-RGAARFFHSRLYKNRLD----KDVYLCNNLINAYLETGDSVSARKVFDEMPL 64

Query: 295 RDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDL--GR 352
           R+ V+W  ++SG  +N    EA     +M   G+      F  +  A     ++ +  GR
Sbjct: 65  RNCVSWACIVSGYSRNGEHKEALVFLRDMVKEGIFSNQYAFVSVLRACQEIGSVGILFGR 124

Query: 353 QIHCVLMKTESESDLILENCLISMYAKC-GVIDNAYNIFSNMVSRDLVSWNSMVMGFSHH 411
           QIH ++ K     D ++ N LISMY KC G +  A   F ++  ++ VSWNS++  +S  
Sbjct: 125 QIHGLMFKLSYAVDAVVSNVLISMYWKCIGSVGYALCAFGDIEVKNSVSWNSIISVYSQA 184

Query: 412 GLANETLKVFESMLESGTHPNSVTFLGIL-SACS 444
           G      ++F SM   G+ P   TF  ++ +ACS
Sbjct: 185 GDQRSAFRIFSSMQYDGSRPTEYTFGSLVTTACS 218



 Score = 72.0 bits (175), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 65/247 (26%), Positives = 115/247 (46%), Gaps = 35/247 (14%)

Query: 8   KSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEE 67
           +S VV  ++ +  YSK G +D A   F  MP RN  S+N+M+SG+ ++G+  EA +LFE 
Sbjct: 651 ESDVVVGSALVDMYSKCGRLDYALRFFNTMPVRNSYSWNSMISGYARHGQGEEALKLFET 710

Query: 68  M-------PERNVVSWTAMICGLADAGRVCEARKLFEEMPER-----NVVSWNSMVVGLI 115
           M       P+   V++  ++   + AG + E  K FE M +       +  ++ M   L 
Sbjct: 711 MKLDGQTPPDH--VTFVGVLSACSHAGLLEEGFKHFESMSDSYGLAPRIEHFSCMADVLG 768

Query: 116 RNGELNEARKVFNSMPIK-NVISWNAMIAGYVECC--------MMGEAIVLFEEMEERNV 166
           R GEL++       MP+K NV+ W  ++     CC        +  +A  +  ++E  N 
Sbjct: 769 RAGELDKLEDFIEKMPMKPNVLIWRTVLGA---CCRANGRKAELGKKAAEMLFQLEPENA 825

Query: 167 VTWTSMISGYCRAGEVEEGYCLFRRMPRKNV-----VSWTAMIGG----FAWNGFHKESL 217
           V +  + + Y   G  E+     ++M   +V      SW  M  G     A +  H ++ 
Sbjct: 826 VNYVLLGNMYAAGGRWEDLVKARKKMKDADVKKEAGYSWVTMKDGVHMFVAGDKSHPDAD 885

Query: 218 LLFIEMK 224
           +++ ++K
Sbjct: 886 VIYKKLK 892



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/99 (33%), Positives = 47/99 (47%)

Query: 351 GRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSH 410
            R  H  L K   + D+ L N LI+ Y + G   +A  +F  M  R+ VSW  +V G+S 
Sbjct: 20  ARFFHSRLYKNRLDKDVYLCNNLINAYLETGDSVSARKVFDEMPLRNCVSWACIVSGYSR 79

Query: 411 HGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLV 449
           +G   E L     M++ G   N   F+ +L AC   G V
Sbjct: 80  NGEHKEALVFLRDMVKEGIFSNQYAFVSVLRACQEIGSV 118


>gi|356559204|ref|XP_003547890.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Glycine max]
          Length = 619

 Score =  291 bits (744), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 177/534 (33%), Positives = 265/534 (49%), Gaps = 60/534 (11%)

Query: 109 SMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEER---- 164
           S +    R G +  AR+VF+     N  +WNAM  GY +     + +VLF  M       
Sbjct: 59  SFITACARLGGIRRARRVFDKTAQPNGATWNAMFRGYAQANCHLDVVVLFARMHRAGASP 118

Query: 165 NVVTWTSMISGYCRAGEVEEG-------------------------------------YC 187
           N  T+  ++     A   +EG                                     Y 
Sbjct: 119 NCFTFPMVVKSCATANAAKEGEEVHCVVAKRGFKSNTFVGCALIHMYSLRGGVFVADAYK 178

Query: 188 LFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIR 247
           +F  M  KNV +WTA++           +    +  + + D     +V   N +++GYI 
Sbjct: 179 VFAEMRDKNVFAWTAIVAAHV-------ACRDMVSARRLFDLAPQRDVVLWNVVVSGYIE 231

Query: 248 FGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGL 307
            G +  A+ LFD +P RD +SW +++ GY + G+V +   LF  MP R+  +W  +I G 
Sbjct: 232 LGDMVAARELFDRMPDRDVMSWNTVLSGYATNGEVESFVKLFEEMPVRNVYSWNGLIGGY 291

Query: 308 VQNELFVEATYLFMEM----RAHG-------VPPLNATFSVLFGAAGATANIDLGRQIHC 356
           V+N LF EA   F  M       G       V P + T   +  A     ++++G+ +H 
Sbjct: 292 VRNGLFKEALECFKRMLVLVEGEGKEGSDGVVVPNDYTVVAVLTACSRLGDLEMGKWVHV 351

Query: 357 VLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANE 416
                  + +L + N LI MYAKCGVI+ A ++F  +  +D+++WN+++ G + HG   +
Sbjct: 352 YAESIGYKGNLFVGNALIDMYAKCGVIEKALDVFDGLDVKDIITWNTIINGLAMHGHVAD 411

Query: 417 TLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMI 476
            L +FE M  +G  P+ VTF+GILSAC+H GLV  G   F +M D Y I P  EHY  M+
Sbjct: 412 ALSLFERMKRAGERPDGVTFVGILSACTHMGLVRNGLLHFQSMVDDYSIVPQIEHYGCMV 471

Query: 477 NLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNA 536
           +LLGRAG I +A + V ++P EPD  IW ALLGAC   + N E+AE A +RL+EL+P N 
Sbjct: 472 DLLGRAGLIDKAVDIVRKMPMEPDAVIWAALLGACRMYK-NVEMAELALQRLIELEPNNP 530

Query: 537 PAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDK 590
              V++ NIY   GR  +  +L++ M   G RKVPGCS +  N  +  F S D+
Sbjct: 531 GNFVMVSNIYKDLGRSQDVARLKVAMRDTGFRKVPGCSVIGCNDSMVEFYSLDE 584



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 94/310 (30%), Positives = 160/310 (51%), Gaps = 36/310 (11%)

Query: 18  ITKYSKRG--FIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVS 75
           I  YS RG  F+ +A  +F  M  +NV ++ A+++  +    +  ARRLF+  P+R+VV 
Sbjct: 162 IHMYSLRGGVFVADAYKVFAEMRDKNVFAWTAIVAAHVACRDMVSARRLFDLAPQRDVVL 221

Query: 76  WTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNV 135
           W  ++ G  + G +  AR+LF+ MP+R+V+SWN+++ G   NGE+    K+F  MP++NV
Sbjct: 222 WNVVVSGYIELGDMVAARELFDRMPDRDVMSWNTVLSGYATNGEVESFVKLFEEMPVRNV 281

Query: 136 ISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRK 195
            SWN +I GYV   +  EA+  F+ M          ++ G  + G   +G  +       
Sbjct: 282 YSWNGLIGGYVRNGLFKEALECFKRM--------LVLVEGEGKEG--SDGVVVPNDYTVV 331

Query: 196 NVVSWTAMIGGF---AWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLE 252
            V++  + +G      W   + ES+            G   N+   N++I+ Y + G +E
Sbjct: 332 AVLTACSRLGDLEMGKWVHVYAESI------------GYKGNLFVGNALIDMYAKCGVIE 379

Query: 253 EAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDR----DAVAWTAMIS--- 305
           +A ++FD + V+D I+W ++I+G    G V++A  LF  M       D V +  ++S   
Sbjct: 380 KALDVFDGLDVKDIITWNTIINGLAMHGHVADALSLFERMKRAGERPDGVTFVGILSACT 439

Query: 306 --GLVQNELF 313
             GLV+N L 
Sbjct: 440 HMGLVRNGLL 449



 Score =  115 bits (289), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 113/447 (25%), Positives = 178/447 (39%), Gaps = 108/447 (24%)

Query: 56  GRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLI 115
           G +  ARR+F++  + N  +W AM  G A A    +   LF  M  R   S N     ++
Sbjct: 68  GGIRRARRVFDKTAQPNGATWNAMFRGYAQANCHLDVVVLFARM-HRAGASPNCFTFPMV 126

Query: 116 ----------RNGE--------------------------------LNEARKVFNSMPIK 133
                     + GE                                + +A KVF  M  K
Sbjct: 127 VKSCATANAAKEGEEVHCVVAKRGFKSNTFVGCALIHMYSLRGGVFVADAYKVFAEMRDK 186

Query: 134 NVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMP 193
           NV +W A++A +V C  M  A  LF+   +R+VV W  ++SGY   G++     LF RMP
Sbjct: 187 NVFAWTAIVAAHVACRDMVSARRLFDLAPQRDVVLWNVVVSGYIELGDMVAARELFDRMP 246

Query: 194 RKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEE 253
            ++V+SW  ++ G+A NG  +  + LF EM          NV S N +I GY+R G  +E
Sbjct: 247 DRDVMSWNTVLSGYATNGEVESFVKLFEEMP-------VRNVYSWNGLIGGYVRNGLFKE 299

Query: 254 AQNLF---------------DTVPVRDEIS------------------WT---------- 270
           A   F               D V V ++ +                  W           
Sbjct: 300 ALECFKRMLVLVEGEGKEGSDGVVVPNDYTVVAVLTACSRLGDLEMGKWVHVYAESIGYK 359

Query: 271 -------SMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEM 323
                  ++ID Y   G +  A  +F  +  +D + W  +I+GL  +    +A  LF  M
Sbjct: 360 GNLFVGNALIDMYAKCGVIEKALDVFDGLDVKDIITWNTIINGLAMHGHVADALSLFERM 419

Query: 324 RAHGVPPLNATFSVLFGAAGATANIDLGRQ--IHCVLMKTESESDLILEN--CLISMYAK 379
           +  G  P   TF    G   A  ++ L R   +H   M  +      +E+  C++ +  +
Sbjct: 420 KRAGERPDGVTF---VGILSACTHMGLVRNGLLHFQSMVDDYSIVPQIEHYGCMVDLLGR 476

Query: 380 CGVIDNAYNIFSNM-VSRDLVSWNSMV 405
            G+ID A +I   M +  D V W +++
Sbjct: 477 AGLIDKAVDIVRKMPMEPDAVIWAALL 503



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 80/291 (27%), Positives = 144/291 (49%), Gaps = 26/291 (8%)

Query: 7   PKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFE 66
           P+  VV     ++ Y + G +  A+ LF  MP R+V+S+N +LSG+  NG +    +LFE
Sbjct: 215 PQRDVVLWNVVVSGYIELGDMVAARELFDRMPDRDVMSWNTVLSGYATNGEVESFVKLFE 274

Query: 67  EMPERNVVSWTAMICGLADAGRVCEARKLFEEM-----------PERNVVSWNSMVVGLI 115
           EMP RNV SW  +I G    G   EA + F+ M            +  VV  +  VV ++
Sbjct: 275 EMPVRNVYSWNGLIGGYVRNGLFKEALECFKRMLVLVEGEGKEGSDGVVVPNDYTVVAVL 334

Query: 116 ----RNGELNEARKVF---NSMPIK-NVISWNAMIAGYVECCMMGEAIVLFEEMEERNVV 167
               R G+L   + V     S+  K N+   NA+I  Y +C ++ +A+ +F+ ++ ++++
Sbjct: 335 TACSRLGDLEMGKWVHVYAESIGYKGNLFVGNALIDMYAKCGVIEKALDVFDGLDVKDII 394

Query: 168 TWTSMISGYCRAGEVEEGYCLFRRMPRK----NVVSWTAMIGGFAWNGFHKESLLLFIEM 223
           TW ++I+G    G V +   LF RM R     + V++  ++      G  +  LL F  M
Sbjct: 395 TWNTIINGLAMHGHVADALSLFERMKRAGERPDGVTFVGILSACTHMGLVRNGLLHFQSM 454

Query: 224 KGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVR-DEISWTSMI 273
             + D      ++    M++   R G +++A ++   +P+  D + W +++
Sbjct: 455 --VDDYSIVPQIEHYGCMVDLLGRAGLIDKAVDIVRKMPMEPDAVIWAALL 503



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 80/318 (25%), Positives = 139/318 (43%), Gaps = 31/318 (9%)

Query: 153 EAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGF 212
           +A ++   +E  + VT  S I+   R G +     +F +  + N  +W AM  G+A    
Sbjct: 42  QAQIVTHGLEGNDYVT-PSFITACARLGGIRRARRVFDKTAQPNGATWNAMFRGYAQANC 100

Query: 213 HKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWT-- 270
           H + ++LF  M      G + N  +   ++         +E + +   V  R   S T  
Sbjct: 101 HLDVVVLFARMH---RAGASPNCFTFPMVVKSCATANAAKEGEEVHCVVAKRGFKSNTFV 157

Query: 271 --SMIDGYLSVGQ--VSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAH 326
             ++I  Y   G   V++AY +F  M D++  AWTA+++  V     V A  LF      
Sbjct: 158 GCALIHMYSLRGGVFVADAYKVFAEMRDKNVFAWTAIVAAHVACRDMVSARRLF------ 211

Query: 327 GVPPLNATFSVLFGAAGATANIDLGRQIHCV-LMKTESESDLILENCLISMYAKCGVIDN 385
               L     V+      +  I+LG  +    L     + D++  N ++S YA  G +++
Sbjct: 212 ---DLAPQRDVVLWNVVVSGYIELGDMVAARELFDRMPDRDVMSWNTVLSGYATNGEVES 268

Query: 386 AYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESML-------ESGTH----PNSV 434
              +F  M  R++ SWN ++ G+  +GL  E L+ F+ ML       + G+     PN  
Sbjct: 269 FVKLFEEMPVRNVYSWNGLIGGYVRNGLFKEALECFKRMLVLVEGEGKEGSDGVVVPNDY 328

Query: 435 TFLGILSACSHAGLVSRG 452
           T + +L+ACS  G +  G
Sbjct: 329 TVVAVLTACSRLGDLEMG 346



 Score = 43.9 bits (102), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 24/103 (23%), Positives = 45/103 (43%)

Query: 353 QIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHG 412
           QI   ++    E +  +    I+  A+ G I  A  +F      +  +WN+M  G++   
Sbjct: 40  QIQAQIVTHGLEGNDYVTPSFITACARLGGIRRARRVFDKTAQPNGATWNAMFRGYAQAN 99

Query: 413 LANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWEL 455
              + + +F  M  +G  PN  TF  ++ +C+ A     G E+
Sbjct: 100 CHLDVVVLFARMHRAGASPNCFTFPMVVKSCATANAAKEGEEV 142


>gi|242085334|ref|XP_002443092.1| hypothetical protein SORBIDRAFT_08g008260 [Sorghum bicolor]
 gi|241943785|gb|EES16930.1| hypothetical protein SORBIDRAFT_08g008260 [Sorghum bicolor]
          Length = 655

 Score =  291 bits (744), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 177/559 (31%), Positives = 295/559 (52%), Gaps = 24/559 (4%)

Query: 57  RLSEARRLFEEMPE-RNVVSWTAMICGLADAGRVCEARKLFEE-MPERNVVSWNSMVVGL 114
           RL+ A  +  +  E  N      M+ G   AG+   A  LF   + +R      ++V  +
Sbjct: 80  RLAHAAAVLAQCAEGPNAYMLATMMRGFLRAGKPAHALALFRRVLRDRLPADARTIVFAV 139

Query: 115 IRNGELNEARKVFNSMPIK------NVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVT 168
                 +   +  + +  K      +V+  NA++  Y     + +A  LF+EM +R+VV+
Sbjct: 140 KAATTSSSPAEAIHCVAFKRGFIGQSVLVGNALVHMYASSMSLPDARKLFDEMADRDVVS 199

Query: 169 WTSMISGYCRAGEVEEGYCLFRRM-------PRK-NVVSWTAMIGGFAWNGFHKESLLLF 220
           WT+++ GY R G  +E + +F RM       P +  +V+  +  G     G  +      
Sbjct: 200 WTTLVDGYARGGLPDEAWRVFCRMVVAGGGWPNEVTLVAAASAAGQIGLLGLGR------ 253

Query: 221 IEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVG 280
           +  + + ++G   +V   N++++ + + G +  A+ +FD +P++D  SWTSM+  Y   G
Sbjct: 254 MVHQCVVESGVRMSVNLENALVDMFGKCGCVASAKEIFDGMPIKDVYSWTSMVSAYAKCG 313

Query: 281 QVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFG 340
            + NA  LF  +P+R+AV+W+ M++   Q  L  EA  +F +M A GV P++AT   +  
Sbjct: 314 DLENAGKLFKEIPNRNAVSWSCMVAAYSQANLPEEAMRIFNDMIAAGVEPIDATLVSVLS 373

Query: 341 AAGATANIDLGRQIH-CVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLV 399
           A      +D+GR ++   ++  + E  + L N  I M+AKCG +  A  +F NM  +++V
Sbjct: 374 ACAQLGCLDVGRCLYDAYIVSHKVELTVNLSNAFIDMFAKCGDVGAASRLFRNMEDKNVV 433

Query: 400 SWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAM 459
           SWN+M++  + HG + E L +F+     G  P+ +T++G+LSACSH+GLVS G   F  M
Sbjct: 434 SWNTMIVAHALHGQSEEALHLFQKFKAIGIFPDEITYIGVLSACSHSGLVSEGRYHFKEM 493

Query: 460 FDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAE 519
             VY I+P  EHY  MI+LLG+ G ++EA E    +P   D   WGALL AC    GN E
Sbjct: 494 KIVYGIEPRAEHYACMIDLLGKVGLLEEAFEVARSMPVGADEAGWGALLNACRM-HGNVE 552

Query: 520 IAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRN 579
           I + AA +L+ LDP ++  +V++  IYA+  +  +   +R  M  +GV+K PGCS +  +
Sbjct: 553 IGKCAADKLVGLDPSDSGIYVLMSQIYASKSKWGQVKMIRTVMRDRGVKKNPGCSSIEVD 612

Query: 580 GGIQMFLSGDKIPAQVAEI 598
           G    FL+ D   A   +I
Sbjct: 613 GKFHEFLAADVSHAHSEDI 631



 Score =  142 bits (357), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 111/408 (27%), Positives = 197/408 (48%), Gaps = 34/408 (8%)

Query: 23  KRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICG 82
           KRGFI +           +V+  NA++  +  +  L +AR+LF+EM +R+VVSWT ++ G
Sbjct: 158 KRGFIGQ-----------SVLVGNALVHMYASSMSLPDARKLFDEMADRDVVSWTTLVDG 206

Query: 83  LADAGRVCEARKLFEEMP--------ERNVVSWNSMV--VGLIRNGELNEARKVFNSMPI 132
            A  G   EA ++F  M         E  +V+  S    +GL+  G +   + V  S   
Sbjct: 207 YARGGLPDEAWRVFCRMVVAGGGWPNEVTLVAAASAAGQIGLLGLGRMVH-QCVVESGVR 265

Query: 133 KNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRM 192
            +V   NA++  + +C  +  A  +F+ M  ++V +WTSM+S Y + G++E    LF+ +
Sbjct: 266 MSVNLENALVDMFGKCGCVASAKEIFDGMPIKDVYSWTSMVSAYAKCGDLENAGKLFKEI 325

Query: 193 PRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLE 252
           P +N VSW+ M+  ++     +E++ +F +M      G      +  S+++   + G L+
Sbjct: 326 PNRNAVSWSCMVAAYSQANLPEEAMRIFNDMIAA---GVEPIDATLVSVLSACAQLGCLD 382

Query: 253 EAQNLFDTVPVRDEISWT-----SMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGL 307
             + L+D   V  ++  T     + ID +   G V  A  LF NM D++ V+W  MI   
Sbjct: 383 VGRCLYDAYIVSHKVELTVNLSNAFIDMFAKCGDVGAASRLFRNMEDKNVVSWNTMIVAH 442

Query: 308 VQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDL 367
             +    EA +LF + +A G+ P   T+  +  A   +  +  GR  H   MK     + 
Sbjct: 443 ALHGQSEEALHLFQKFKAIGIFPDEITYIGVLSACSHSGLVSEGRY-HFKEMKIVYGIEP 501

Query: 368 ILEN--CLISMYAKCGVIDNAYNIFSNM-VSRDLVSWNSMVMGFSHHG 412
             E+  C+I +  K G+++ A+ +  +M V  D   W +++     HG
Sbjct: 502 RAEHYACMIDLLGKVGLLEEAFEVARSMPVGADEAGWGALLNACRMHG 549



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 74/272 (27%), Positives = 137/272 (50%), Gaps = 16/272 (5%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWT 77
           +  + K G +  AK +F  MP ++V S+ +M+S + + G L  A +LF+E+P RN VSW+
Sbjct: 275 VDMFGKCGCVASAKEIFDGMPIKDVYSWTSMVSAYAKCGDLENAGKLFKEIPNRNAVSWS 334

Query: 78  AMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRN----GELNEARKVFNSMPIK 133
            M+   + A    EA ++F +M    V   ++ +V ++      G L+  R ++++  + 
Sbjct: 335 CMVAAYSQANLPEEAMRIFNDMIAAGVEPIDATLVSVLSACAQLGCLDVGRCLYDAYIVS 394

Query: 134 NVISW-----NAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCL 188
           + +       NA I  + +C  +G A  LF  ME++NVV+W +MI  +   G+ EE   L
Sbjct: 395 HKVELTVNLSNAFIDMFAKCGDVGAASRLFRNMEDKNVVSWNTMIVAHALHGQSEEALHL 454

Query: 189 FRRMPRKNV----VSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMING 244
           F++     +    +++  ++   + +G   E    F EMK +   G     +    MI+ 
Sbjct: 455 FQKFKAIGIFPDEITYIGVLSACSHSGLVSEGRYHFKEMKIV--YGIEPRAEHYACMIDL 512

Query: 245 YIRFGRLEEAQNLFDTVPV-RDEISWTSMIDG 275
             + G LEEA  +  ++PV  DE  W ++++ 
Sbjct: 513 LGKVGLLEEAFEVARSMPVGADEAGWGALLNA 544



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 55/199 (27%), Positives = 92/199 (46%), Gaps = 13/199 (6%)

Query: 7   PKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFE 66
           P   V   TS ++ Y+K G ++ A  LF+ +P RN VS++ M++ + Q     EA R+F 
Sbjct: 295 PIKDVYSWTSMVSAYAKCGDLENAGKLFKEIPNRNAVSWSCMVAAYSQANLPEEAMRIFN 354

Query: 67  EMPERNVVSWTAMIC---------GLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRN 117
           +M    V    A +          G  D GR      +     E  V   N+ +    + 
Sbjct: 355 DMIAAGVEPIDATLVSVLSACAQLGCLDVGRCLYDAYIVSHKVELTVNLSNAFIDMFAKC 414

Query: 118 GELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNV----VTWTSMI 173
           G++  A ++F +M  KNV+SWN MI  +       EA+ LF++ +   +    +T+  ++
Sbjct: 415 GDVGAASRLFRNMEDKNVVSWNTMIVAHALHGQSEEALHLFQKFKAIGIFPDEITYIGVL 474

Query: 174 SGYCRAGEVEEGYCLFRRM 192
           S    +G V EG   F+ M
Sbjct: 475 SACSHSGLVSEGRYHFKEM 493


>gi|347954536|gb|AEP33768.1| organelle transcript processing 82, partial [Nasturtium officinale]
          Length = 670

 Score =  290 bits (743), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 184/558 (32%), Positives = 292/558 (52%), Gaps = 24/558 (4%)

Query: 58  LSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRN 117
           L  A  +FE + E N++ W  M  G A +     A KL+  M    ++  +     L+++
Sbjct: 13  LPYAISVFETIQEPNLLIWNTMFRGHALSPDPVSALKLYVCMISLGLLPNSYTFPFLLKS 72

Query: 118 GELNEARK--------VFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTW 169
               +A K        V       ++    ++I+ YV+   + +A  +F+    R+VV++
Sbjct: 73  CAKLKASKEGLQIHGHVLKLGYELDLYVHTSLISMYVQNERLEDAHKVFDRSSHRDVVSY 132

Query: 170 TSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDN 229
           T++++GY   G +E    +F  +P K+VVSW AMI G+   G +KE+L LF EM      
Sbjct: 133 TALVTGYASRGYIESARNMFDEIPVKDVVSWNAMISGYVETGNYKEALELFKEM---MKT 189

Query: 230 GNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEIS----WTSMIDGYLSVGQVSNA 285
               +  +  ++I+   R G +E  + +   +      S      ++ID Y   G++  A
Sbjct: 190 NVRPDESTMVTVISASARSGSIELGRQVHSWIADHGFGSNLKIVNALIDFYSKCGEMETA 249

Query: 286 YYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGAT 345
             LF  +  +D ++W  +I G     L+ EA  LF EM   G  P + T   +  A    
Sbjct: 250 CGLFLGLSYKDVISWNILIGGYTHLNLYKEALLLFQEMLRSGESPNDVTMLSILHACAHL 309

Query: 346 ANIDLGRQIHCVLMK-----TESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVS 400
             ID+GR IH  + K     T + S   L   LI MY+KCG I+ A+ +F++M+ + L +
Sbjct: 310 GAIDIGRWIHVYIDKRLKGVTNASS---LRTSLIDMYSKCGDIEAAHQVFNSMLHKSLPA 366

Query: 401 WNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMF 460
           WN+M+ GF+ HG AN    +F  M ++   P+ +TF+G+LSACSHAG++  G  +F +M 
Sbjct: 367 WNAMIFGFAMHGRANAAFDIFSRMRKNEIKPDDITFVGLLSACSHAGMLDLGRHIFRSMT 426

Query: 461 DVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEI 520
             YKI P  EHY  MI+LLG +G  KEAEE +  +  EPD  IW +LL AC    GN E+
Sbjct: 427 HNYKITPKLEHYGCMIDLLGHSGLFKEAEEMISTMTMEPDGVIWCSLLKACKM-HGNVEL 485

Query: 521 AEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNG 580
            E  A+ L +++P N  ++V+L NIYA +GR  E  ++R  +  KG++KVPGCS +  + 
Sbjct: 486 GEKFAQNLFKIEPNNPGSYVLLSNIYATAGRWNEVARIRGLLNDKGMKKVPGCSSIEIDS 545

Query: 581 GIQMFLSGDKIPAQVAEI 598
            +  F+ GDK   +  EI
Sbjct: 546 VVHEFIIGDKFHPRNREI 563



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 128/487 (26%), Positives = 216/487 (44%), Gaps = 63/487 (12%)

Query: 20  KYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAM 79
           K SK G       L +L  + ++  + +++S ++QN RL +A ++F+    R+VVS+TA+
Sbjct: 77  KASKEGLQIHGHVL-KLGYELDLYVHTSLISMYVQNERLEDAHKVFDRSSHRDVVSYTAL 135

Query: 80  ICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWN 139
           + G A  G +  AR +F+E+P ++VVSWN+M+ G +  G   EA ++F  M   NV    
Sbjct: 136 VTGYASRGYIESARNMFDEIPVKDVVSWNAMISGYVETGNYKEALELFKEMMKTNVRPDE 195

Query: 140 AMIAGYVECCMMGEAIVLFEEMEE--------RNVVTWTSMISGYCRAGEVEEGYCLFRR 191
           + +   +       +I L  ++           N+    ++I  Y + GE+E    LF  
Sbjct: 196 STMVTVISASARSGSIELGRQVHSWIADHGFGSNLKIVNALIDFYSKCGEMETACGLFLG 255

Query: 192 MPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCN----VQSCNSMINGYIR 247
           +  K+V+SW  +IGG+     +KE+LLLF EM    ++ N+      + +C  +  G I 
Sbjct: 256 LSYKDVISWNILIGGYTHLNLYKEALLLFQEMLRSGESPNDVTMLSILHACAHL--GAID 313

Query: 248 FGRL------EEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWT 301
            GR       +  + + +   +R     TS+ID Y   G +  A+ +F++M  +   AW 
Sbjct: 314 IGRWIHVYIDKRLKGVTNASSLR-----TSLIDMYSKCGDIEAAHQVFNSMLHKSLPAWN 368

Query: 302 AMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKT 361
           AMI G   +     A  +F  MR + + P + TF  L  A      +DLGR I   +   
Sbjct: 369 AMIFGFAMHGRANAAFDIFSRMRKNEIKPDDITFVGLLSACSHAGMLDLGRHIFRSMTHN 428

Query: 362 ESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVF 421
                                           ++  L  +  M+    H GL  E  ++ 
Sbjct: 429 YK------------------------------ITPKLEHYGCMIDLLGHSGLFKEAEEMI 458

Query: 422 ESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQP-GPEHYVSMINLLG 480
            +M      P+ V +  +L AC   G V  G +    +F   KI+P  P  YV + N+  
Sbjct: 459 STMT---MEPDGVIWCSLLKACKMHGNVELGEKFAQNLF---KIEPNNPGSYVLLSNIYA 512

Query: 481 RAGKIKE 487
            AG+  E
Sbjct: 513 TAGRWNE 519



 Score = 48.9 bits (115), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 36/148 (24%), Positives = 73/148 (49%), Gaps = 13/148 (8%)

Query: 15  TSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNV- 73
           TS I  YSK G I+ A  +F  M  +++ ++NAM+ GF  +GR + A  +F  M +  + 
Sbjct: 337 TSLIDMYSKCGDIEAAHQVFNSMLHKSLPAWNAMIFGFAMHGRANAAFDIFSRMRKNEIK 396

Query: 74  ---VSWTAMICGLADAGRVCEARKLFEEMPERNVVS-----WNSMVVGLIRNGELNEARK 125
              +++  ++   + AG +   R +F  M     ++     +  M+  L  +G   EA +
Sbjct: 397 PDDITFVGLLSACSHAGMLDLGRHIFRSMTHNYKITPKLEHYGCMIDLLGHSGLFKEAEE 456

Query: 126 VFNSMPIK-NVISWNAMIAGYVECCMMG 152
           + ++M ++ + + W +++     C M G
Sbjct: 457 MISTMTMEPDGVIWCSLLKA---CKMHG 481


>gi|347954514|gb|AEP33757.1| organelle transcript processing 82, partial [Aethionema
           cordifolium]
          Length = 679

 Score =  290 bits (743), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 181/555 (32%), Positives = 296/555 (53%), Gaps = 18/555 (3%)

Query: 58  LSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPE----RNVVSWNSMVVG 113
           L  A  +F+ + E N +SW  MI G A +     A  L+  M       N  ++  +   
Sbjct: 28  LPYAISVFKSIQEPNQLSWNTMIRGHALSSDPISALNLYVYMISLGLSPNSYTFPFLFKS 87

Query: 114 LIRNGELNEARKVFNSMPIKNVISWN-----AMIAGYVECCMMGEAIVLFEEMEERNVVT 168
             ++    E +++ ++  +K  ++ +     ++I+ Y +  ++ +A  +F+    R+VV+
Sbjct: 88  CAKSKAAQEGKQI-HAQILKYGLTVDLHVHTSLISMYAQNGIVEDAHKVFDTSSHRDVVS 146

Query: 169 WTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICD 228
           +T+MI+GY   G +++   +F  +P K+VVSW AMI G+A  G +KE+L LF EM  +  
Sbjct: 147 YTAMITGYASRGNMDKAQKMFDEIPIKDVVSWNAMISGYAEIGRYKEALELFNEMMKMDV 206

Query: 229 NGNNCNVQSCNSMI--NGYIRFGRLEEAQNLFDTVPVRDEISWT-SMIDGYLSVGQVSNA 285
             +   + +  S    +G +  GR  +  +  D       +    ++ID Y   G++  A
Sbjct: 207 KPDESTMATVLSTCTHSGNVELGR--QIHSWIDNHGFGSNLKLVNALIDLYSKCGEMERA 264

Query: 286 YYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGAT 345
           + LF  +  +D ++W  +I G        EA  +F EM   G  P + T   +  A    
Sbjct: 265 HGLFEGLQYKDVISWNTLIGGYAYINHHKEALLVFQEMLKLGETPNDVTMLSILPACAHL 324

Query: 346 ANIDLGRQIHCVLMKTESE--SDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNS 403
             ID+GR IH  + K      ++  L+  LI MYAKCG I+ A  +F  ++++ L S N+
Sbjct: 325 GAIDIGRWIHVYIDKKLKGIITNTSLQTSLIDMYAKCGNIEAANQVFDTILNKSLSSCNA 384

Query: 404 MVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVY 463
           M+ GF+ HG A+    +   M + G  P+ +TF+G+LSACSHAGL   G ++F +M   Y
Sbjct: 385 MIFGFAMHGRADAAFDLLSRMKKDGIEPDDITFVGLLSACSHAGLSDLGRKIFKSMTLDY 444

Query: 464 KIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEH 523
           +I+P  EHY  MI+LLGR+G  KEAEE +  +  EPD  IWG+LL AC     N E+ E 
Sbjct: 445 RIEPKLEHYGCMIDLLGRSGLFKEAEELINSMTMEPDGVIWGSLLKACKI-HKNLELGEL 503

Query: 524 AAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQ 583
            A++L++++P N  ++V+L NIYA S R  +  ++R  +  KG++KVPGCS +  +  + 
Sbjct: 504 IAQKLMKIEPKNPGSYVLLSNIYATSARWDDVARVRTLLNDKGLKKVPGCSSIEIDSMVH 563

Query: 584 MFLSGDKIPAQVAEI 598
            FL GDK   Q  EI
Sbjct: 564 EFLIGDKFHPQNKEI 578



 Score =  141 bits (356), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 115/415 (27%), Positives = 195/415 (46%), Gaps = 55/415 (13%)

Query: 9   SLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEM 68
            L VH TS I+ Y++ G +++A  +F     R+VVSY AM++G+   G + +A+++F+E+
Sbjct: 112 DLHVH-TSLISMYAQNGIVEDAHKVFDTSSHRDVVSYTAMITGYASRGNMDKAQKMFDEI 170

Query: 69  PERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLI----RNGELNEAR 124
           P ++VVSW AMI G A+ GR  EA +LF EM + +V    S +  ++     +G +   R
Sbjct: 171 PIKDVVSWNAMISGYAEIGRYKEALELFNEMMKMDVKPDESTMATVLSTCTHSGNVELGR 230

Query: 125 KVF----NSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAG 180
           ++     N     N+   NA+I  Y +C  M  A  LFE ++ ++V++W ++I GY    
Sbjct: 231 QIHSWIDNHGFGSNLKLVNALIDLYSKCGEMERAHGLFEGLQYKDVISWNTLIGGY---- 286

Query: 181 EVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQS--- 237
                                      A+   HKE+LL+F EM  + +  N+  + S   
Sbjct: 287 ---------------------------AYINHHKEALLVFQEMLKLGETPNDVTMLSILP 319

Query: 238 -CNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTS----MIDGYLSVGQVSNAYYLFHNM 292
            C  +  G I  GR     +++    ++  I+ TS    +ID Y   G +  A  +F  +
Sbjct: 320 ACAHL--GAIDIGRW---IHVYIDKKLKGIITNTSLQTSLIDMYAKCGNIEAANQVFDTI 374

Query: 293 PDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGR 352
            ++   +  AMI G   +     A  L   M+  G+ P + TF  L  A       DLGR
Sbjct: 375 LNKSLSSCNAMIFGFAMHGRADAAFDLLSRMKKDGIEPDDITFVGLLSACSHAGLSDLGR 434

Query: 353 QI-HCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNM-VSRDLVSWNSMV 405
           +I   + +    E  L    C+I +  + G+   A  + ++M +  D V W S++
Sbjct: 435 KIFKSMTLDYRIEPKLEHYGCMIDLLGRSGLFKEAEELINSMTMEPDGVIWGSLL 489


>gi|225432698|ref|XP_002278762.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14820
           [Vitis vinifera]
 gi|297737070|emb|CBI26271.3| unnamed protein product [Vitis vinifera]
          Length = 727

 Score =  290 bits (743), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 202/604 (33%), Positives = 302/604 (50%), Gaps = 39/604 (6%)

Query: 2   SERNHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEA 61
           S+ +   SL+V L  S    S    +D A ++F L+P+             L N  L E 
Sbjct: 49  SKLDRSTSLLVKLVISSCALSSS--LDYALSVFNLIPKPET---------HLCNRFLREL 97

Query: 62  RRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSW-NSMVVGLIRNGEL 120
            R   E PE+ ++ +  M        R       F   P    +S   S+V GL  +G  
Sbjct: 98  SR--SEEPEKTLLVYERMRTQGLAVDR-------FSFPPLLKALSRVKSLVEGLEIHGL- 147

Query: 121 NEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAG 180
             A+  F+S P         ++  Y  C  + EA ++F++M  R+VVTW+ MI GYC++G
Sbjct: 148 -AAKLGFDSDPFVQ----TGLVRMYAACGRIAEARLMFDKMFHRDVVTWSIMIDGYCQSG 202

Query: 181 EVEEGYCLFRRMPRKNVVSWTAMIG------GFAWNGFHKESLLLFIEMKGICDNGNNCN 234
              +   LF  M   NV     M+       G A N  + + +  FI    I  + +   
Sbjct: 203 LFNDALLLFEEMKNYNVEPDEMMLSTVLSACGRAGNLSYGKMIHDFIMENNIVVDPH--- 259

Query: 235 VQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPD 294
           +QS  +++  Y   G ++ A NLF+ +  ++ ++ T+M+ GY  +GQ+ NA  +F+ M  
Sbjct: 260 LQS--ALVTMYASCGSMDLALNLFEKMTPKNLVASTAMVTGYSKLGQIENARSVFNQMVK 317

Query: 295 RDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQI 354
           +D V W+AMISG  +++   EA  LF EM++ G+ P   T   +  A      +D  + I
Sbjct: 318 KDLVCWSAMISGYAESDSPQEALNLFNEMQSLGIKPDQVTMLSVITACAHLGALDQAKWI 377

Query: 355 HCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLA 414
           H  + K      L + N LI MYAKCG ++ A  IF  M  ++++SW  M+  F+ HG A
Sbjct: 378 HLFVDKNGFGGALPINNALIEMYAKCGSLERARRIFDKMPRKNVISWTCMISAFAMHGDA 437

Query: 415 NETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVS 474
              L+ F  M +    PN +TF+G+L ACSHAGLV  G ++F +M + + I P   HY  
Sbjct: 438 GSALRFFHQMEDENIEPNGITFVGVLYACSHAGLVEEGRKIFYSMINEHNITPKHVHYGC 497

Query: 475 MINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPL 534
           M++L GRA  ++EA E V  +P  P+  IWG+L+ AC    G  E+ E AAKRLLELDP 
Sbjct: 498 MVDLFGRANLLREALELVEAMPLAPNVIIWGSLMAACRV-HGEIELGEFAAKRLLELDPD 556

Query: 535 NAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQ 594
           +  AHV L NIYA + R  +  ++R  M  KG+ K  GCS    N  I  FL  D+    
Sbjct: 557 HDGAHVFLSNIYAKARRWEDVGQVRKLMKHKGISKERGCSRFELNNEIHEFLVADRSHKH 616

Query: 595 VAEI 598
             EI
Sbjct: 617 ADEI 620


>gi|359474320|ref|XP_002270938.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g22760-like [Vitis vinifera]
          Length = 580

 Score =  290 bits (743), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 158/440 (35%), Positives = 250/440 (56%), Gaps = 11/440 (2%)

Query: 139 NAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVV 198
            A++  Y +   M  A  +F+EM ERNVV+W SM++GY ++G++     +F  +P+K+V+
Sbjct: 147 TALVDFYCKLGDMEIARKMFDEMAERNVVSWNSMLAGYLKSGDLVVAQRVFDEIPQKDVI 206

Query: 199 SWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLF 258
           SW +MI G+A  G  +++  LF +M          N  S N+MI+G++ FG ++ A++ F
Sbjct: 207 SWNSMISGYARAGDMEKASSLFQQMP-------ERNFASWNAMISGHVEFGDIDSARSFF 259

Query: 259 DTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATY 318
           D +P ++ +SW +MI GY   G V +A  LF  +  +D + + AMI+   QN    EA  
Sbjct: 260 DAMPQKNNVSWMTMISGYSKCGDVDSACELFDQVGGKDLLLFNAMIACYAQNSRPNEALN 319

Query: 319 LFMEMRAH--GVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISM 376
           LF  M      V P   T + +  A     ++  G  I   + +   E D  L   L+ +
Sbjct: 320 LFNNMLNPYVNVQPDEMTLASVISACSQLGDLRFGPWIESYMRRLGIEMDGHLATALLDL 379

Query: 377 YAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTF 436
           YAKCG ID AY +F  +  +DLV++ +M++G   +G A + +K+F+ M+++   PNS+TF
Sbjct: 380 YAKCGSIDKAYELFHGLRKKDLVAYTAMILGCGINGKAIDAIKLFDEMVDAQIFPNSITF 439

Query: 437 LGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLP 496
           +G+L+A +HAGLV  G+  F +M   Y + P  +HY  M++L GRAG+++EA E +  +P
Sbjct: 440 IGLLTAYNHAGLVEEGYRCFTSM-KKYNLVPSVDHYGIMVDLFGRAGRLQEALELIKSMP 498

Query: 497 FEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEH 556
            +P   +WGALL AC     N E  E AA+   EL+P       +L NIYA+  R  +  
Sbjct: 499 MQPHAGVWGALLLACRL-HNNVEFGEIAAQHCFELEPDTTGYRSLLSNIYASGERWDDVK 557

Query: 557 KLRMDMGLKGVRKVPGCSWL 576
           +LR     KG  K+PGCSW+
Sbjct: 558 RLRKVTKEKGFSKIPGCSWM 577



 Score =  186 bits (473), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 137/476 (28%), Positives = 236/476 (49%), Gaps = 77/476 (16%)

Query: 15  TSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVV 74
           T+ +  Y K G ++ A+ +F  M +RNVVS+N+ML+G+L++G L  A+R+F+E+P+++V+
Sbjct: 147 TALVDFYCKLGDMEIARKMFDEMAERNVVSWNSMLAGYLKSGDLVVAQRVFDEIPQKDVI 206

Query: 75  SWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKN 134
           SW +MI G A AG + +A  LF++MPERN  SWN+M+ G +  G+++ AR  F++MP KN
Sbjct: 207 SWNSMISGYARAGDMEKASSLFQQMPERNFASWNAMISGHVEFGDIDSARSFFDAMPQKN 266

Query: 135 VISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRM-- 192
            +SW  MI+GY +C  +  A  LF+++  ++++ + +MI+ Y +     E   LF  M  
Sbjct: 267 NVSWMTMISGYSKCGDVDSACELFDQVGGKDLLLFNAMIACYAQNSRPNEALNLFNNMLN 326

Query: 193 PRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLE 252
           P  NV                 E  L  +             + +C+ +  G +RFG   
Sbjct: 327 PYVNVQP--------------DEMTLASV-------------ISACSQL--GDLRFGPWI 357

Query: 253 EAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNEL 312
           E+      + +   ++ T+++D Y   G +  AY LFH +  +D VA+TAMI G   N  
Sbjct: 358 ESYMRRLGIEMDGHLA-TALLDLYAKCGSIDKAYELFHGLRKKDLVAYTAMILGCGINGK 416

Query: 313 FVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENC 372
            ++A  LF EM    + P + TF              +G                     
Sbjct: 417 AIDAIKLFDEMVDAQIFPNSITF--------------IG--------------------- 441

Query: 373 LISMYAKCGVIDNAYNIFSNMVSRDLVS----WNSMVMGFSHHGLANETLKVFESMLESG 428
           L++ Y   G+++  Y  F++M   +LV     +  MV  F   G   E L++ +SM    
Sbjct: 442 LLTAYNHAGLVEEGYRCFTSMKKYNLVPSVDHYGIMVDLFGRAGRLQEALELIKSM---P 498

Query: 429 THPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGK 484
             P++  +  +L AC     V  G E+  A    ++++P    Y S+++ +  +G+
Sbjct: 499 MQPHAGVWGALLLACRLHNNVEFG-EI--AAQHCFELEPDTTGYRSLLSNIYASGE 551



 Score = 62.8 bits (151), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 59/254 (23%), Positives = 107/254 (42%), Gaps = 24/254 (9%)

Query: 288 LFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATAN 347
           + H+    D+ +W   I    Q+  F EA  L+++M+  G+ P     S    A    A 
Sbjct: 61  VLHHSKSPDSFSWACAIRFSTQHGQFKEAFALYVQMQRWGLCPTTFALSSALKACARIAY 120

Query: 348 IDLGRQIHCVLMK---TESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSM 404
              G  IH  + K   +     + +E  L+  Y K G ++ A  +F  M  R++VSWNSM
Sbjct: 121 RMGGISIHGQVQKFGFSCGGDGIYVETALVDFYCKLGDMEIARKMFDEMAERNVVSWNSM 180

Query: 405 VMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYK 464
           + G+    L +  L V + + +     + +++  ++S  + AG + +   LF  M     
Sbjct: 181 LAGY----LKSGDLVVAQRVFDEIPQKDVISWNSMISGYARAGDMEKASSLFQQM----- 231

Query: 465 IQPGPEH----YVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGA---CGFCEGN 517
               PE     + +MI+     G I  A  F   +P + ++  W  ++     CG  +  
Sbjct: 232 ----PERNFASWNAMISGHVEFGDIDSARSFFDAMP-QKNNVSWMTMISGYSKCGDVDSA 286

Query: 518 AEIAEHAAKRLLEL 531
            E+ +    + L L
Sbjct: 287 CELFDQVGGKDLLL 300


>gi|255551609|ref|XP_002516850.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223543938|gb|EEF45464.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 623

 Score =  290 bits (743), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 174/600 (29%), Positives = 298/600 (49%), Gaps = 74/600 (12%)

Query: 72  NVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMP 131
           N+   T+ I  L  +G +  ARKLF+EMP R+ V+WNSM+    + G   EA  +F  M 
Sbjct: 4   NLFRITSKISALGSSGYIVHARKLFDEMPNRDTVAWNSMITSYSQLGFHQEALSIFYQMR 63

Query: 132 IKN--------------------------------VISW-------NAMIAGYVECCMMG 152
             N                                ++ +       N++I  Y +C    
Sbjct: 64  NTNTKPDHFTFTATLSACAGAGSFPFGTKIHALVIILGYHSSLPVNNSLIDMYGKCFDAF 123

Query: 153 EAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGF 212
            A  +F+EM + N V+W S++  Y  +G   E   +F  MPRK  ++W  MI G    G 
Sbjct: 124 SAGQVFKEMGDINEVSWCSLLFAYTNSGRFSEASEIFNLMPRKFEIAWNTMIAGLGRYGE 183

Query: 213 HKESLLLFIEMKG--------------------------------ICDNGNNCNVQSCNS 240
            +  L +F EM+                                 +  +G +  +++ NS
Sbjct: 184 IELCLDMFREMRESLLEPDQWTYSALISACTESLEFLSGCMLHGLVIRSGWSSAMEAKNS 243

Query: 241 MINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAW 300
           +++ Y +FG L +A  + ++     ++SW ++ID Y+ VG V+ AY +F ++P+++ V+W
Sbjct: 244 ILSLYAKFGSLNDALKVVESTGRLTQVSWNAIIDAYMKVGYVNEAYLMFQSLPEKNIVSW 303

Query: 301 TAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMK 360
           T+MI+G  +N    EA   F+ M ++   P + TF  +  A  + A +  GR +H   ++
Sbjct: 304 TSMITGYARNGYGEEALRFFVAMASNCFLPDDFTFGAVLHACSSLAVLGHGRMVHGCAIR 363

Query: 361 TESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKV 420
               + L + N L++MYAKCG +D +   F ++ ++DLVS+N+++  F  HG A+E L++
Sbjct: 364 NGFSTYLYVGNGLVNMYAKCGDLDGSILAFHDICAKDLVSFNALLFAFGLHGKASEALQL 423

Query: 421 FESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLG 480
           +E M+  GT P+ +TF+G+L  CSH+GL+  G   FN+M  V+ +    +H   M+++LG
Sbjct: 424 YEDMMTCGTKPDKMTFIGLLMTCSHSGLIEEGRLFFNSMKSVHGLSYEADHVACMVDMLG 483

Query: 481 RAGKIKEAEEFVLRLPFEPDHRIWG--ALLGACGFCEGNAEIAEHAAKRLLELDPLNAPA 538
           R G + EA+E V +     D       ALLGAC    G  E+  +  K L  L+P    +
Sbjct: 484 RGGYLAEAKELVKKYSKTSDVEASSCEALLGACS-AHGEVEMGTYLGKTLKTLEPNKEIS 542

Query: 539 HVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
           +V+  N+Y   G+  E   +R  M  +G++K+PGCSW+     +  F++G+ +     E+
Sbjct: 543 YVLQSNLYCVRGQWKEAEMVRKAMVDEGLKKMPGCSWIEVRNKVTAFVAGNHLYPYTDEL 602


>gi|225431281|ref|XP_002268784.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Vitis vinifera]
          Length = 647

 Score =  290 bits (743), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 167/451 (37%), Positives = 258/451 (57%), Gaps = 12/451 (2%)

Query: 156 VLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNV--VSWTAMIGGFAWNGFH 213
           ++F+++E  N   WT++I GY   G   E   L+  M R+ +  VS+T      A +   
Sbjct: 94  LVFQQVEYPNPFLWTALIRGYALQGPFMESVLLYNSMRRQGIGPVSFTFTALLKACSAAL 153

Query: 214 KESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMI 273
             +L   +  + I   G   ++   N++I+ Y++ G L     +FD +  RD ISWTS+I
Sbjct: 154 DVNLGRQVHTQTILIGGFGSDLYVGNTLIDMYVKCGCLGCGHRVFDEMLDRDVISWTSLI 213

Query: 274 DGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNA 333
             Y  VG +  A  LF  +P +D VAWTAM++G  QN    EA  +F  M+A GV     
Sbjct: 214 VAYAKVGNMEAASELFDGLPMKDMVAWTAMVTGYAQNARPREALEVFERMQAAGVKTDEV 273

Query: 334 TFSVLFGAAGATANIDLGRQIHCVLMKTESE-----SDLILENCLISMYAKCGVIDNAYN 388
           T   L G   A A +   +  + V    E       S++++ + LI MYAKCG +++AY 
Sbjct: 274 T---LVGVISACAQLGAAKYANWVRDVAEQSGFGPTSNVVVGSALIDMYAKCGSVEDAYK 330

Query: 389 IFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGL 448
           +F  M  R++ S++SM++GF+ HGLA   +++F+ ML++   PN VTF+G+L+ACSHAG+
Sbjct: 331 VFERMEERNVYSYSSMIVGFAMHGLAGAAMELFDEMLKTEIKPNRVTFIGVLTACSHAGM 390

Query: 449 VSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALL 508
           V +G +LF  M + + + P  +HY  M++LLGRAG+++EA   V  +P  P   +WGALL
Sbjct: 391 VEQGQQLFAMMEECHGVAPSEDHYACMVDLLGRAGRLEEALNLVKMMPMNPHGGVWGALL 450

Query: 509 GACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVR 568
           GAC    GN ++A+ AA  L EL+P     +++L NIYA++GR  +  K+R  M  KG++
Sbjct: 451 GACRI-HGNPDMAQIAASHLFELEPNGIGNYILLSNIYASAGRWDDVSKVRKLMRAKGLK 509

Query: 569 KVPGCSWLM-RNGGIQMFLSGDKIPAQVAEI 598
           K PGCSW+  + G I  F +GD    +  EI
Sbjct: 510 KNPGCSWVEGKKGIIHEFFAGDMSHPKSREI 540



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 90/350 (25%), Positives = 165/350 (47%), Gaps = 23/350 (6%)

Query: 62  RRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNG--- 118
           R +F+++   N   WTA+I G A  G   E+  L+  M  + +   +     L++     
Sbjct: 93  RLVFQQVEYPNPFLWTALIRGYALQGPFMESVLLYNSMRRQGIGPVSFTFTALLKACSAA 152

Query: 119 -ELNEARKVFNSMPI-----KNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSM 172
            ++N  R+V     +      ++   N +I  YV+C  +G    +F+EM +R+V++WTS+
Sbjct: 153 LDVNLGRQVHTQTILIGGFGSDLYVGNTLIDMYVKCGCLGCGHRVFDEMLDRDVISWTSL 212

Query: 173 ISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNN 232
           I  Y + G +E    LF  +P K++V+WTAM+ G+A N   +E+L +F  M+     G  
Sbjct: 213 IVAYAKVGNMEAASELFDGLPMKDMVAWTAMVTGYAQNARPREALEVFERMQAA---GVK 269

Query: 233 CNVQSCNSMINGYIRFGRLEEAQNLFDTV------PVRDEISWTSMIDGYLSVGQVSNAY 286
            +  +   +I+   + G  + A  + D        P  + +  +++ID Y   G V +AY
Sbjct: 270 TDEVTLVGVISACAQLGAAKYANWVRDVAEQSGFGPTSNVVVGSALIDMYAKCGSVEDAY 329

Query: 287 YLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATA 346
            +F  M +R+  ++++MI G   + L   A  LF EM    + P   TF  +  A     
Sbjct: 330 KVFERMEERNVYSYSSMIVGFAMHGLAGAAMELFDEMLKTEIKPNRVTFIGVLTACSHAG 389

Query: 347 NIDLGRQIHCVLMKTESESDLILEN---CLISMYAKCGVIDNAYNIFSNM 393
            ++ G+Q+    M  E       E+   C++ +  + G ++ A N+   M
Sbjct: 390 MVEQGQQLFA--MMEECHGVAPSEDHYACMVDLLGRAGRLEEALNLVKMM 437



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 76/265 (28%), Positives = 127/265 (47%), Gaps = 22/265 (8%)

Query: 46  NAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVV 105
           N ++  +++ G L    R+F+EM +R+V+SWT++I   A  G +  A +LF+ +P +++V
Sbjct: 179 NTLIDMYVKCGCLGCGHRVFDEMLDRDVISWTSLIVAYAKVGNMEAASELFDGLPMKDMV 238

Query: 106 SWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVE-CCMMGEAIVL--FEEME 162
           +W +MV G  +N    EA +VF  M    V +    + G +  C  +G A       ++ 
Sbjct: 239 AWTAMVTGYAQNARPREALEVFERMQAAGVKTDEVTLVGVISACAQLGAAKYANWVRDVA 298

Query: 163 ER-------NVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKE 215
           E+       NVV  +++I  Y + G VE+ Y +F RM  +NV S+++MI GFA +G    
Sbjct: 299 EQSGFGPTSNVVVGSALIDMYAKCGSVEDAYKVFERMEERNVYSYSSMIVGFAMHGLAGA 358

Query: 216 SLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLF-------DTVPVRDEIS 268
           ++ LF EM       N         ++      G +E+ Q LF          P  D   
Sbjct: 359 AMELFDEMLKTEIKPNRVTFI---GVLTACSHAGMVEQGQQLFAMMEECHGVAPSEDH-- 413

Query: 269 WTSMIDGYLSVGQVSNAYYLFHNMP 293
           +  M+D     G++  A  L   MP
Sbjct: 414 YACMVDLLGRAGRLEEALNLVKMMP 438



 Score =  102 bits (253), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 76/260 (29%), Positives = 127/260 (48%), Gaps = 16/260 (6%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWT 77
           I  Y K G +     +F  M  R+V+S+ +++  + + G +  A  LF+ +P +++V+WT
Sbjct: 182 IDMYVKCGCLGCGHRVFDEMLDRDVISWTSLIVAYAKVGNMEAASELFDGLPMKDMVAWT 241

Query: 78  AMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSM------- 130
           AM+ G A   R  EA ++FE M    V +    +VG+I       A K  N +       
Sbjct: 242 AMVTGYAQNARPREALEVFERMQAAGVKTDEVTLVGVISACAQLGAAKYANWVRDVAEQS 301

Query: 131 ---PIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYC 187
              P  NV+  +A+I  Y +C  + +A  +FE MEERNV +++SMI G+   G       
Sbjct: 302 GFGPTSNVVVGSALIDMYAKCGSVEDAYKVFERMEERNVYSYSSMIVGFAMHGLAGAAME 361

Query: 188 LFRRMPRK----NVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMIN 243
           LF  M +     N V++  ++   +  G  ++   LF  M+       + +  +C  M++
Sbjct: 362 LFDEMLKTEIKPNRVTFIGVLTACSHAGMVEQGQQLFAMMEECHGVAPSEDHYAC--MVD 419

Query: 244 GYIRFGRLEEAQNLFDTVPV 263
              R GRLEEA NL   +P+
Sbjct: 420 LLGRAGRLEEALNLVKMMPM 439



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/135 (33%), Positives = 73/135 (54%), Gaps = 9/135 (6%)

Query: 7   PKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFE 66
           P S VV  ++ I  Y+K G +++A  +F+ M +RNV SY++M+ GF  +G    A  LF+
Sbjct: 305 PTSNVVVGSALIDMYAKCGSVEDAYKVFERMEERNVYSYSSMIVGFAMHGLAGAAMELFD 364

Query: 67  EMPER----NVVSWTAMICGLADAGRVCEARKLFEEMPERNVVS-----WNSMVVGLIRN 117
           EM +     N V++  ++   + AG V + ++LF  M E + V+     +  MV  L R 
Sbjct: 365 EMLKTEIKPNRVTFIGVLTACSHAGMVEQGQQLFAMMEECHGVAPSEDHYACMVDLLGRA 424

Query: 118 GELNEARKVFNSMPI 132
           G L EA  +   MP+
Sbjct: 425 GRLEEALNLVKMMPM 439


>gi|296082238|emb|CBI21243.3| unnamed protein product [Vitis vinifera]
          Length = 778

 Score =  290 bits (743), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 174/535 (32%), Positives = 277/535 (51%), Gaps = 22/535 (4%)

Query: 77  TAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVI 136
           T++I   A  G +  A  LF      NV  WN ++           + ++++ M    + 
Sbjct: 38  TSLIAQYASLGSISHAYALFSTSHSSNVFLWNHIIRAFSNTPHSRNSLRLYSRMLQLGIQ 97

Query: 137 SWNAMIAGYVECC----------MMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGY 186
           + N      ++ C               +V+F    E +V    S+++ Y R G  +   
Sbjct: 98  ATNFTFPFLLKACGCLADFELGARAHAHVVVFGY--ESDVFVANSLMAMYGRFGCFDFSR 155

Query: 187 CLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEM--KGICDN-GNNCNVQSCNSMIN 243
            +F RMP +NVVSW++M+G +A NG ++E LLLF  M  +GI  N G+  N  +C    +
Sbjct: 156 QVFERMPERNVVSWSSMVGAYAHNGRYEEGLLLFWRMLNEGIAPNRGSIVNAMACIHREH 215

Query: 244 GYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAM 303
               F R+     + D     D+    + +  Y   G++  A   F+ + D+D VAWT+M
Sbjct: 216 EADDFCRV-----VIDNGLDSDQSVQNAAMGMYARCGRIDVARRFFYGILDKDLVAWTSM 270

Query: 304 ISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTES 363
           I   VQ +L + A  LF +M+  G+ P + T   L  A    A+  L R +H V+ ++  
Sbjct: 271 IEAYVQADLPINALELFKQMKLLGIVPDSVTLLSLIHAVSNLASFQLARFVHGVITRSFF 330

Query: 364 ESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFES 423
           ++ + L+  +I +Y KCG ++ A   F  M +R+L+SW++M+ G+  HG   E L +F+ 
Sbjct: 331 KNHIALDTAVIDLYVKCGNLEYARKCFDRMSARNLISWSTMISGYGMHGHGREALCLFDQ 390

Query: 424 MLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAG 483
           M ++   P+ + F+ +LSACSH GL++ GWE F AM   + + P  EHY  M++LLGRAG
Sbjct: 391 M-KASIKPDHIAFVMVLSACSHGGLIAEGWECFKAMNRDFGVTPRTEHYACMVDLLGRAG 449

Query: 484 KIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLC 543
           ++ EA+ F+ R+P  PD  +WGALLGAC     N E AE AA+ L  LD  N   +++L 
Sbjct: 450 RLSEAQAFIERMPITPDAGVWGALLGACRI-HSNLETAETAARHLFNLDAENPGRYILLS 508

Query: 544 NIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
           NIYA+SG+  E   +R  M  +GVRK  G + +     +  F++GD    Q   I
Sbjct: 509 NIYASSGKRKEADDIRALMKSRGVRKTVGHTIIEIKNKVYTFVAGDTSNPQTDLI 563



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 84/342 (24%), Positives = 148/342 (43%), Gaps = 60/342 (17%)

Query: 16  SSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEM------P 69
           S +  Y + G  D ++ +F+ MP+RNVVS+++M+  +  NGR  E   LF  M      P
Sbjct: 140 SLMAMYGRFGCFDFSRQVFERMPERNVVSWSSMVGAYAHNGRYEEGLLLFWRMLNEGIAP 199

Query: 70  ER-NVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFN 128
            R ++V+  A I    +A   C  R + +   + +    N+ +    R G ++ AR+ F 
Sbjct: 200 NRGSIVNAMACIHREHEADDFC--RVVIDNGLDSDQSVQNAAMGMYARCGRIDVARRFFY 257

Query: 129 SMPIKNVISWNAMIAGYVECCMMGEAIVLFEEME-------------------------- 162
            +  K++++W +MI  YV+  +   A+ LF++M+                          
Sbjct: 258 GILDKDLVAWTSMIEAYVQADLPINALELFKQMKLLGIVPDSVTLLSLIHAVSNLASFQL 317

Query: 163 -------------ERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAW 209
                        + ++   T++I  Y + G +E     F RM  +N++SW+ MI G+  
Sbjct: 318 ARFVHGVITRSFFKNHIALDTAVIDLYVKCGNLEYARKCFDRMSARNLISWSTMISGYGM 377

Query: 210 NGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDT------VPV 263
           +G  +E+L LF +MK      +   V   ++  +G    G + E    F        V  
Sbjct: 378 HGHGREALCLFDQMKASIKPDHIAFVMVLSACSHG----GLIAEGWECFKAMNRDFGVTP 433

Query: 264 RDEISWTSMIDGYLSVGQVSNAYYLFHNMP-DRDAVAWTAMI 304
           R E  +  M+D     G++S A      MP   DA  W A++
Sbjct: 434 RTE-HYACMVDLLGRAGRLSEAQAFIERMPITPDAGVWGALL 474



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 38/139 (27%), Positives = 69/139 (49%), Gaps = 9/139 (6%)

Query: 15  TSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMP---ER 71
           T+ I  Y K G ++ A+  F  M  RN++S++ M+SG+  +G   EA  LF++M    + 
Sbjct: 338 TAVIDLYVKCGNLEYARKCFDRMSARNLISWSTMISGYGMHGHGREALCLFDQMKASIKP 397

Query: 72  NVVSWTAMICGLADAGRVCEARKLFEEMPERNVVS-----WNSMVVGLIRNGELNEARKV 126
           + +++  ++   +  G + E  + F+ M     V+     +  MV  L R G L+EA+  
Sbjct: 398 DHIAFVMVLSACSHGGLIAEGWECFKAMNRDFGVTPRTEHYACMVDLLGRAGRLSEAQAF 457

Query: 127 FNSMPIK-NVISWNAMIAG 144
              MPI  +   W A++  
Sbjct: 458 IERMPITPDAGVWGALLGA 476


>gi|326488767|dbj|BAJ97995.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 919

 Score =  290 bits (743), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 186/625 (29%), Positives = 306/625 (48%), Gaps = 55/625 (8%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMP----ERNV 73
           I  Y + G +  A+ +F  MP  + V++N ++S   Q G    A  +FEEM       + 
Sbjct: 185 IALYLRFGSLSLAERVFSEMPYCDRVTFNTLISRHAQCGNGESALEIFEEMRLSGWTPDC 244

Query: 74  VSWTAMICGLADAGRVCEARKLFEEMPER----NVVSWNSMVVGLIRNGELNEARKVFNS 129
           V+  +++   A  G + + ++L   + +     + +   S++   ++ G + EA ++F S
Sbjct: 245 VTIASLLAACASIGDLNKGKQLHSYLLKAGMSPDYIIEGSLLDLYVKCGVIVEALEIFKS 304

Query: 130 MPIKNVISWNAMIAGYVECCMMGEAIVLFEEME--------------------------- 162
               NV+ WN M+  Y +   + ++  LF +M                            
Sbjct: 305 GDRTNVVLWNLMLVAYGQISDLAKSFDLFCQMVAAGVRPNEFTYPCLLRTCTYAGEINLG 364

Query: 163 ------------ERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWN 210
                       E ++     +I  Y + G +++   +   +  K+VVSWT+MI G+  +
Sbjct: 365 EQIHLLSIKTGFESDMYVSGVLIDMYSKYGWLDKARRILEVLEAKDVVSWTSMIAGYVQH 424

Query: 211 GFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVR----DE 266
            F KE+L  F +M+      +N  + S  S   G      + + Q +   V V     D 
Sbjct: 425 EFCKEALETFKDMQLFGIWPDNIGLASAISACAG---IKAMRQGQQIHSRVYVSGYSADV 481

Query: 267 ISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAH 326
             W ++++ Y   G+   A+ LF  +  +D + W  M+SG  Q+ L+ EA  +F++M   
Sbjct: 482 SIWNALVNLYARCGRSKEAFSLFEAIEHKDKITWNGMVSGFAQSGLYEEALEVFIKMYQA 541

Query: 327 GVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNA 386
           GV     TF     A+   A+I  G+QIH  ++KT   S+  + N LIS+Y KCG I++A
Sbjct: 542 GVKYNVFTFVSSISASANLADIKQGKQIHATVIKTGCTSETEVANALISLYGKCGSIEDA 601

Query: 387 YNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHA 446
              F  M  R+ VSWN+++   S HG   E L +F+ M + G  PN VTF+G+L+ACSH 
Sbjct: 602 KMQFFEMSERNHVSWNTIITSCSQHGWGLEALDLFDQMKQEGLKPNDVTFIGVLAACSHV 661

Query: 447 GLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGA 506
           GLV  G   F +M   + I P P+HY  ++++LGRAG++  A +FV  +P   +  +W  
Sbjct: 662 GLVEEGLGYFKSMSSEHGIHPRPDHYACVVDILGRAGQLDRARKFVEEMPVSANAMVWRT 721

Query: 507 LLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKG 566
           LL AC     N EI E AAK LLEL+P ++ ++V+L N YA +G+      +R  M  +G
Sbjct: 722 LLSACRV-HKNIEIGELAAKYLLELEPHDSASYVLLSNAYAVTGKWACRDHVRKMMKDRG 780

Query: 567 VRKVPGCSWLMRNGGIQMFLSGDKI 591
           VRK PG SW+     +  F  GD++
Sbjct: 781 VRKEPGRSWIEVKNVVHAFFVGDRL 805



 Score =  181 bits (460), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 143/550 (26%), Positives = 254/550 (46%), Gaps = 66/550 (12%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEM------PER 71
           I  Y+K+G +  A+ +F+ +  R+ VS+ AMLSG+ +NG   EA  L+ +M      P  
Sbjct: 84  IDLYAKKGLVQRARRVFEQLSARDNVSWVAMLSGYARNGLGEEAVGLYHQMHCSGVVPTP 143

Query: 72  NVVSWTAMIC---GLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFN 128
            V+S     C    L + GR+  A +++++      V  N+++   +R G L+ A +VF+
Sbjct: 144 YVLSSVLSACTKAALFEQGRLVHA-QVYKQGSCSETVVGNALIALYLRFGSLSLAERVFS 202

Query: 129 SMPIKNVISWNAMIAGYVECCMMGEAIVLFEEME----ERNVVTWTSMISG--------- 175
            MP  + +++N +I+ + +C     A+ +FEEM       + VT  S+++          
Sbjct: 203 EMPYCDRVTFNTLISRHAQCGNGESALEIFEEMRLSGWTPDCVTIASLLAACASIGDLNK 262

Query: 176 --------------------------YCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAW 209
                                     Y + G + E   +F+   R NVV W  M+  +  
Sbjct: 263 GKQLHSYLLKAGMSPDYIIEGSLLDLYVKCGVIVEALEIFKSGDRTNVVLWNLMLVAYGQ 322

Query: 210 NGFHKESLLLFIEMKGICDNGNN----CNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRD 265
                +S  LF +M       N     C +++C     G I  G   E  +L       +
Sbjct: 323 ISDLAKSFDLFCQMVAAGVRPNEFTYPCLLRTCT--YAGEINLG---EQIHLLSIKTGFE 377

Query: 266 EISWTS--MIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEM 323
              + S  +ID Y   G +  A  +   +  +D V+WT+MI+G VQ+E   EA   F +M
Sbjct: 378 SDMYVSGVLIDMYSKYGWLDKARRILEVLEAKDVVSWTSMIAGYVQHEFCKEALETFKDM 437

Query: 324 RAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVI 383
           +  G+ P N   +    A      +  G+QIH  +  +   +D+ + N L+++YA+CG  
Sbjct: 438 QLFGIWPDNIGLASAISACAGIKAMRQGQQIHSRVYVSGYSADVSIWNALVNLYARCGRS 497

Query: 384 DNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSAC 443
             A+++F  +  +D ++WN MV GF+  GL  E L+VF  M ++G   N  TF+  +SA 
Sbjct: 498 KEAFSLFEAIEHKDKITWNGMVSGFAQSGLYEEALEVFIKMYQAGVKYNVFTFVSSISAS 557

Query: 444 SHAGLVSRGWELFNAMFDVYKIQPGPEHYV--SMINLLGRAGKIKEAEEFVLRLPFEPDH 501
           ++   + +G ++      V K     E  V  ++I+L G+ G I++A+     +  E +H
Sbjct: 558 ANLADIKQGKQIHAT---VIKTGCTSETEVANALISLYGKCGSIEDAKMQFFEMS-ERNH 613

Query: 502 RIWGALLGAC 511
             W  ++ +C
Sbjct: 614 VSWNTIITSC 623



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 118/457 (25%), Positives = 205/457 (44%), Gaps = 30/457 (6%)

Query: 58  LSEARRLFEEMPERNVVSWTAMICGL--------------ADAGRVCEARKLFEEMPERN 103
           L E R   +  P   V+   A+ CGL              A  G V  AR++FE++  R+
Sbjct: 48  LRECRGSVKHWPLVPVIHAKAITCGLGEDRIAGNLLIDLYAKKGLVQRARRVFEQLSARD 107

Query: 104 VVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAI-------- 155
            VSW +M+ G  RNG   EA  +++ M    V+    +++  +  C              
Sbjct: 108 NVSWVAMLSGYARNGLGEEAVGLYHQMHCSGVVPTPYVLSSVLSACTKAALFEQGRLVHA 167

Query: 156 VLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKE 215
            ++++      V   ++I+ Y R G +     +F  MP  + V++  +I   A  G  + 
Sbjct: 168 QVYKQGSCSETVVGNALIALYLRFGSLSLAERVFSEMPYCDRVTFNTLISRHAQCGNGES 227

Query: 216 SLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVR----DEISWTS 271
           +L +F EM+    +G   +  +  S++      G L + + L   +       D I   S
Sbjct: 228 ALEIFEEMR---LSGWTPDCVTIASLLAACASIGDLNKGKQLHSYLLKAGMSPDYIIEGS 284

Query: 272 MIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPL 331
           ++D Y+  G +  A  +F +    + V W  M+    Q     ++  LF +M A GV P 
Sbjct: 285 LLDLYVKCGVIVEALEIFKSGDRTNVVLWNLMLVAYGQISDLAKSFDLFCQMVAAGVRPN 344

Query: 332 NATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFS 391
             T+  L         I+LG QIH + +KT  ESD+ +   LI MY+K G +D A  I  
Sbjct: 345 EFTYPCLLRTCTYAGEINLGEQIHLLSIKTGFESDMYVSGVLIDMYSKYGWLDKARRILE 404

Query: 392 NMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSR 451
            + ++D+VSW SM+ G+  H    E L+ F+ M   G  P+++     +SAC+    + +
Sbjct: 405 VLEAKDVVSWTSMIAGYVQHEFCKEALETFKDMQLFGIWPDNIGLASAISACAGIKAMRQ 464

Query: 452 GWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEA 488
           G ++ + ++ V         + +++NL  R G+ KEA
Sbjct: 465 GQQIHSRVY-VSGYSADVSIWNALVNLYARCGRSKEA 500



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 76/250 (30%), Positives = 127/250 (50%), Gaps = 6/250 (2%)

Query: 265 DEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMR 324
           D I+   +ID Y   G V  A  +F  +  RD V+W AM+SG  +N L  EA  L+ +M 
Sbjct: 76  DRIAGNLLIDLYAKKGLVQRARRVFEQLSARDNVSWVAMLSGYARNGLGEEAVGLYHQMH 135

Query: 325 AHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVID 384
             GV P     S +  A    A  + GR +H  + K  S S+ ++ N LI++Y + G + 
Sbjct: 136 CSGVVPTPYVLSSVLSACTKAALFEQGRLVHAQVYKQGSCSETVVGNALIALYLRFGSLS 195

Query: 385 NAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACS 444
            A  +FS M   D V++N+++   +  G     L++FE M  SG  P+ VT   +L+AC+
Sbjct: 196 LAERVFSEMPYCDRVTFNTLISRHAQCGNGESALEIFEEMRLSGWTPDCVTIASLLAACA 255

Query: 445 HAGLVSRGWELFNAMFDVYKIQPGPEHYV--SMINLLGRAGKIKEAEEFVLRLPFEPDHR 502
             G +++G +L + +    K    P++ +  S+++L  + G I EA E + +     +  
Sbjct: 256 SIGDLNKGKQLHSYLL---KAGMSPDYIIEGSLLDLYVKCGVIVEALE-IFKSGDRTNVV 311

Query: 503 IWGALLGACG 512
           +W  +L A G
Sbjct: 312 LWNLMLVAYG 321


>gi|147780302|emb|CAN70248.1| hypothetical protein VITISV_032008 [Vitis vinifera]
          Length = 679

 Score =  290 bits (742), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 145/408 (35%), Positives = 237/408 (58%), Gaps = 10/408 (2%)

Query: 188 LFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIR 247
           +F  MP++++VSW  +I G A NG H+++L++  EM       ++  + S   +   Y+ 
Sbjct: 152 VFEMMPKRDIVSWNTVISGNAQNGMHEDALMMVREMGNADLRPDSFTLSSVLPIFAEYVN 211

Query: 248 FGRLEEA-----QNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTA 302
             + +E      +N +D     D    +S+ID Y    +V ++  +F+ +P  D ++W +
Sbjct: 212 LLKGKEIHGYAIRNGYDA----DVFIGSSLIDMYAKCTRVDDSCRVFYMLPQHDGISWNS 267

Query: 303 MISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTE 362
           +I+G VQN +F E    F +M    + P + +FS +  A      + LG+Q+H  ++++ 
Sbjct: 268 IIAGCVQNGMFDEGLKFFQQMLIAKIKPNHVSFSSIMPACAHLTTLHLGKQLHGYIIRSR 327

Query: 363 SESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFE 422
            + ++ + + L+ MYAKCG I  A  IF  M   D+VSW +M+MG++ HG A + + +F+
Sbjct: 328 FDGNVFIASALVDMYAKCGNIRTARWIFDKMELYDMVSWTAMIMGYALHGHAYDAISLFK 387

Query: 423 SMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRA 482
            M   G  PN V F+ +L+ACSHAGLV   W+ FN+M   Y+I PG EHY ++ +LLGR 
Sbjct: 388 RMEVEGVKPNYVAFMAVLTACSHAGLVDEAWKYFNSMTQDYRIIPGLEHYAAVADLLGRV 447

Query: 483 GKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVL 542
           G+++EA EF+  +  EP   +W  LL AC     N E+AE  +K+L  +DP N  A+V+L
Sbjct: 448 GRLEEAYEFISDMHIEPTGSVWSTLLAACR-VHKNIELAEKVSKKLFTVDPQNIGAYVLL 506

Query: 543 CNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDK 590
            NIY+A+GR  +  KLR+ M  KG++K P CSW+     +  F++GDK
Sbjct: 507 SNIYSAAGRWKDARKLRIAMRDKGMKKKPACSWIEIKNKVHAFVAGDK 554



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 71/328 (21%), Positives = 144/328 (43%), Gaps = 59/328 (17%)

Query: 21  YSKRG----FIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMP------- 69
           YSK+     ++   + +F++MP+R++VS+N ++SG  QNG   +A  +  EM        
Sbjct: 136 YSKKEKESYYLGSLRKVFEMMPKRDIVSWNTVISGNAQNGMHEDALMMVREMGNADLRPD 195

Query: 70  --------------------------------ERNVVSWTAMICGLADAGRVCEARKLFE 97
                                           + +V   +++I   A   RV ++ ++F 
Sbjct: 196 SFTLSSVLPIFAEYVNLLKGKEIHGYAIRNGYDADVFIGSSLIDMYAKCTRVDDSCRVFY 255

Query: 98  EMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVL 157
            +P+ + +SWNS++ G ++NG  +E  K F  M I  +   +   +  +  C     + L
Sbjct: 256 MLPQHDGISWNSIIAGCVQNGMFDEGLKFFQQMLIAKIKPNHVSFSSIMPACAHLTTLHL 315

Query: 158 FEEME--------ERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAW 209
            +++         + NV   ++++  Y + G +     +F +M   ++VSWTAMI G+A 
Sbjct: 316 GKQLHGYIIRSRFDGNVFIASALVDMYAKCGNIRTARWIFDKMELYDMVSWTAMIMGYAL 375

Query: 210 NGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEI-- 267
           +G   +++ LF  M+     G   N  +  +++      G ++EA   F+++     I  
Sbjct: 376 HGHAYDAISLFKRMEV---EGVKPNYVAFMAVLTACSHAGLVDEAWKYFNSMTQDYRIIP 432

Query: 268 ---SWTSMIDGYLSVGQVSNAYYLFHNM 292
               + ++ D    VG++  AY    +M
Sbjct: 433 GLEHYAAVADLLGRVGRLEEAYEFISDM 460



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 54/203 (26%), Positives = 106/203 (52%), Gaps = 12/203 (5%)

Query: 4   RNHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARR 63
           RN   + V   +S I  Y+K   +D++  +F ++PQ + +S+N++++G +QNG   E  +
Sbjct: 224 RNGYDADVFIGSSLIDMYAKCTRVDDSCRVFYMLPQHDGISWNSIIAGCVQNGMFDEGLK 283

Query: 64  LFEEM----PERNVVSWTAMICGLADAGRVCEARKL----FEEMPERNVVSWNSMVVGLI 115
            F++M     + N VS+++++   A    +   ++L         + NV   +++V    
Sbjct: 284 FFQQMLIAKIKPNHVSFSSIMPACAHLTTLHLGKQLHGYIIRSRFDGNVFIASALVDMYA 343

Query: 116 RNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEME----ERNVVTWTS 171
           + G +  AR +F+ M + +++SW AMI GY       +AI LF+ ME    + N V + +
Sbjct: 344 KCGNIRTARWIFDKMELYDMVSWTAMIMGYALHGHAYDAISLFKRMEVEGVKPNYVAFMA 403

Query: 172 MISGYCRAGEVEEGYCLFRRMPR 194
           +++    AG V+E +  F  M +
Sbjct: 404 VLTACSHAGLVDEAWKYFNSMTQ 426


>gi|357507131|ref|XP_003623854.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498869|gb|AES80072.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 865

 Score =  290 bits (742), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 171/552 (30%), Positives = 288/552 (52%), Gaps = 16/552 (2%)

Query: 53  LQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVV 112
           L  G  + AR+LF+ +P+ +  + + +I  L   G   EA K++  + ER +     + +
Sbjct: 109 LNVGDFNRARQLFDNIPQPDPTTCSTLISALTTHGLSNEAIKIYSSLQERGIKPDMPVFL 168

Query: 113 GLIR----NGELNEARKVFNSMP----IKNVISWNAMIAGYVECCMMGEAIVLFEEMEER 164
              +    +G+    ++V +       + +V   NA+I  Y +C  +  A  +F+++  R
Sbjct: 169 AAAKACAVSGDALRVKEVHDDATRCGVMSDVFVGNALIHAYGKCKCVEGARRVFDDLVVR 228

Query: 165 NVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMK 224
           +VV+WTS+ S Y + G   +G  +FR M    V      +          + L    E+ 
Sbjct: 229 DVVSWTSLSSCYVKCGFPRKGMDVFREMGWSGVKPNPMTVSSILPACAELKDLKSGKEIH 288

Query: 225 GIC-DNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVS 283
           G    +G   N+  C+++++ Y +   + EA+ +FD +P RD +SW  ++  Y    +  
Sbjct: 289 GFAVRHGMVVNLFVCSALVSLYAKCLSVREARMVFDLMPHRDVVSWNGVLTAYFKNKEYE 348

Query: 284 NAYYLFHNMPDRDAV-----AWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVL 338
             + LF  M  RD V      W A+I G ++N    EA  +F +M+  G  P   T S +
Sbjct: 349 KGFSLFLKM-SRDGVRADEATWNAVIGGCMENGRSEEAVEMFRKMQKMGFKPNEITISSI 407

Query: 339 FGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDL 398
             A   + N+ +G++IHC + +     DL     L+ MYAKCG ++ + N+F  M  +D+
Sbjct: 408 LPACSFSENLRMGKEIHCYVFRHWKVGDLTSTTALLYMYAKCGDLNLSRNVFDMMRRKDV 467

Query: 399 VSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNA 458
           V+WN+M++  + HG   E L +F+ ML S   PNSVTF G+LS CSH+ LV  G ++FN+
Sbjct: 468 VAWNTMIIANAMHGNGKEALFLFDKMLLSRVQPNSVTFTGVLSGCSHSRLVEEGVQIFNS 527

Query: 459 MFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNA 518
           M   + ++P   HY  ++++  RAG++ EA +F+  +P EP    WGALL AC   + N 
Sbjct: 528 MGRDHLVEPDANHYSCVVDIYSRAGRLNEAYKFIQGMPMEPTASAWGALLAACRVYK-NV 586

Query: 519 EIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMR 578
           E+A+ +AK+L E++P N   +V L NI   +    E  ++R+ M  +G+ K PGCSWL  
Sbjct: 587 ELAKISAKKLFEIEPNNPGNYVSLFNILVTAKMWSEASQVRILMKERGITKTPGCSWLQV 646

Query: 579 NGGIQMFLSGDK 590
              +  F+ GDK
Sbjct: 647 GNKVHTFVVGDK 658



 Score =  115 bits (288), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 109/419 (26%), Positives = 196/419 (46%), Gaps = 31/419 (7%)

Query: 46  NAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVV 105
           NA++  + +   +  ARR+F+++  R+VVSWT++       G   +   +F EM    V 
Sbjct: 203 NALIHAYGKCKCVEGARRVFDDLVVRDVVSWTSLSSCYVKCGFPRKGMDVFREMGWSGVK 262

Query: 106 SWNSMVVGLI----------RNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAI 155
             N M V  I          ++G+      V + M + N+   +A+++ Y +C  + EA 
Sbjct: 263 P-NPMTVSSILPACAELKDLKSGKEIHGFAVRHGMVV-NLFVCSALVSLYAKCLSVREAR 320

Query: 156 VLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNV----VSWTAMIGGFAWNG 211
           ++F+ M  R+VV+W  +++ Y +  E E+G+ LF +M R  V     +W A+IGG   NG
Sbjct: 321 MVFDLMPHRDVVSWNGVLTAYFKNKEYEKGFSLFLKMSRDGVRADEATWNAVIGGCMENG 380

Query: 212 FHKESLLLFIEMKGICDNGNNCNVQS----CNSMINGYIRFGRLEEAQNLFDTVPVRDEI 267
             +E++ +F +M+ +    N   + S    C+   N  +R G+ E    +F    V D  
Sbjct: 381 RSEEAVEMFRKMQKMGFKPNEITISSILPACSFSEN--LRMGK-EIHCYVFRHWKVGDLT 437

Query: 268 SWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHG 327
           S T+++  Y   G ++ +  +F  M  +D VAW  MI     +    EA +LF +M    
Sbjct: 438 STTALLYMYAKCGDLNLSRNVFDMMRRKDVVAWNTMIIANAMHGNGKEALFLFDKMLLSR 497

Query: 328 VPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTE-SESDLILENCLISMYAKCGVIDNA 386
           V P + TF+ +      +  ++ G QI   + +    E D    +C++ +Y++ G ++ A
Sbjct: 498 VQPNSVTFTGVLSGCSHSRLVEEGVQIFNSMGRDHLVEPDANHYSCVVDIYSRAGRLNEA 557

Query: 387 YNIFSNMVSRDLVS-WNSMVMG---FSHHGLAN-ETLKVFESMLESGTHPNSVTFLGIL 440
           Y     M      S W +++     + +  LA     K+FE  +E     N V+   IL
Sbjct: 558 YKFIQGMPMEPTASAWGALLAACRVYKNVELAKISAKKLFE--IEPNNPGNYVSLFNIL 614



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 81/332 (24%), Positives = 158/332 (47%), Gaps = 24/332 (7%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNV---- 73
           ++ Y+K   + EA+ +F LMP R+VVS+N +L+ + +N    +   LF +M    V    
Sbjct: 307 VSLYAKCLSVREARMVFDLMPHRDVVSWNGVLTAYFKNKEYEKGFSLFLKMSRDGVRADE 366

Query: 74  VSWTAMICGLADAGRVCEARKLFEEMPER----NVVSWNSMVVGLIRNGELNEARK---- 125
            +W A+I G  + GR  EA ++F +M +     N ++ +S++     +  L   ++    
Sbjct: 367 ATWNAVIGGCMENGRSEEAVEMFRKMQKMGFKPNEITISSILPACSFSENLRMGKEIHCY 426

Query: 126 VFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEG 185
           VF    + ++ S  A++  Y +C  +  +  +F+ M  ++VV W +MI      G  +E 
Sbjct: 427 VFRHWKVGDLTSTTALLYMYAKCGDLNLSRNVFDMMRRKDVVAWNTMIIANAMHGNGKEA 486

Query: 186 YCLFRRM----PRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSM 241
             LF +M     + N V++T ++ G + +   +E + +F  M        + N  SC  +
Sbjct: 487 LFLFDKMLLSRVQPNSVTFTGVLSGCSHSRLVEEGVQIFNSMGRDHLVEPDANHYSC--V 544

Query: 242 INGYIRFGRLEEAQNLFDTVPVRDEIS-WTSMIDGYLSVGQVS----NAYYLFHNMPDRD 296
           ++ Y R GRL EA      +P+    S W +++        V     +A  LF   P+  
Sbjct: 545 VDIYSRAGRLNEAYKFIQGMPMEPTASAWGALLAACRVYKNVELAKISAKKLFEIEPNNP 604

Query: 297 AVAWTAMISGLVQNELFVEATYLFMEMRAHGV 328
              + ++ + LV  +++ EA+ + + M+  G+
Sbjct: 605 G-NYVSLFNILVTAKMWSEASQVRILMKERGI 635



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 85/378 (22%), Positives = 155/378 (41%), Gaps = 93/378 (24%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEM------PER 71
           I  Y K   ++ A+ +F  +  R+VVS+ ++ S +++ G   +   +F EM      P  
Sbjct: 206 IHAYGKCKCVEGARRVFDDLVVRDVVSWTSLSSCYVKCGFPRKGMDVFREMGWSGVKPNP 265

Query: 72  NVVS---------------------------------WTAMICGLADAGRVCEARKLFEE 98
             VS                                  +A++   A    V EAR +F+ 
Sbjct: 266 MTVSSILPACAELKDLKSGKEIHGFAVRHGMVVNLFVCSALVSLYAKCLSVREARMVFDL 325

Query: 99  MPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNV----ISWNAMIAGYVECCMMGEA 154
           MP R+VVSWN ++    +N E  +   +F  M    V     +WNA+I G +E     EA
Sbjct: 326 MPHRDVVSWNGVLTAYFKNKEYEKGFSLFLKMSRDGVRADEATWNAVIGGCMENGRSEEA 385

Query: 155 IVLFEEMEER---------------------------------------NVVTWTSMISG 175
           + +F +M++                                        ++ + T+++  
Sbjct: 386 VEMFRKMQKMGFKPNEITISSILPACSFSENLRMGKEIHCYVFRHWKVGDLTSTTALLYM 445

Query: 176 YCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNV 235
           Y + G++     +F  M RK+VV+W  MI   A +G  KE+L LF +M     +    N 
Sbjct: 446 YAKCGDLNLSRNVFDMMRRKDVVAWNTMIIANAMHGNGKEALFLFDKM---LLSRVQPNS 502

Query: 236 QSCNSMINGYIRFGRLEEAQNLFDTVPVRDEI------SWTSMIDGYLSVGQVSNAYYLF 289
            +   +++G      +EE   +F+++  RD +       ++ ++D Y   G+++ AY   
Sbjct: 503 VTFTGVLSGCSHSRLVEEGVQIFNSMG-RDHLVEPDANHYSCVVDIYSRAGRLNEAYKFI 561

Query: 290 HNMP-DRDAVAWTAMISG 306
             MP +  A AW A+++ 
Sbjct: 562 QGMPMEPTASAWGALLAA 579



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 24/85 (28%), Positives = 44/85 (51%)

Query: 373 LISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPN 432
           LI +    G  + A  +F N+   D  + ++++   + HGL+NE +K++ S+ E G  P+
Sbjct: 104 LIRVALNVGDFNRARQLFDNIPQPDPTTCSTLISALTTHGLSNEAIKIYSSLQERGIKPD 163

Query: 433 SVTFLGILSACSHAGLVSRGWELFN 457
              FL    AC+ +G   R  E+ +
Sbjct: 164 MPVFLAAAKACAVSGDALRVKEVHD 188


>gi|18483237|gb|AAL73981.1|AF466201_10 putative vegetative storage protein [Sorghum bicolor]
          Length = 779

 Score =  290 bits (742), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 195/630 (30%), Positives = 307/630 (48%), Gaps = 62/630 (9%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEM------PER 71
           + ++  RG +  A+ +F  +P  +  +YNA++  +   G    A  L+  M      P +
Sbjct: 40  LEQHIARGQLALARQVFDRIPAPDARAYNALIRAYSWRGPFHAAIDLYRSMLYFRVPPNK 99

Query: 72  NVVSWTAMIC-GLAD--AGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFN 128
               +    C  LAD  AGR   A      +     VS  +++   IR      A  VF 
Sbjct: 100 YTFPFVLKACSALADLCAGRTIHAHAAAVGLHTDLFVS-TALIDLYIRCARFGPAANVFA 158

Query: 129 SMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEER-----NVVTWTSMISGYCRAGEVE 183
            MP+++V++WNAM+AGY    M   AI    +M++R     N  T  S++    + G + 
Sbjct: 159 KMPMRDVVAWNAMLAGYANHGMYHHAIAHLLDMQDRGGLRPNASTLVSLLPLLAQHGALF 218

Query: 184 EG-----YCL---------------------------------FRRMPRKNVVSWTAMIG 205
           +G     YCL                                 F  M  +N V+W+A+IG
Sbjct: 219 QGTSVHAYCLRAYLDQNEEQVLIGTALLDMYAKCKHLVYACRVFHGMTVRNEVTWSALIG 278

Query: 206 GFAWNGFHKESLLLFIEM--KGIC---DNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDT 260
           GF       E+  LF +M  +G+C          ++ C S+ +  +R G    A  L  +
Sbjct: 279 GFVLCDRMTEAFNLFKDMLVEGMCFLSATSVASALRVCASLAD--LRMGTQLHAL-LAKS 335

Query: 261 VPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLF 320
               D  +  S++  Y   G ++ A  LF  +  +D +++ A++SG VQN    EA  +F
Sbjct: 336 GIHADLTAGNSLLSMYAKAGLINEATMLFDEIAIKDTISYGALLSGYVQNGKAEEAFLVF 395

Query: 321 MEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKC 380
            +M+A  V P  AT   L  A    A +  GR  H  ++      +  + N LI MYAKC
Sbjct: 396 KKMQACNVQPDIATMVSLIPACSHLAALQHGRCSHGSVIIRGLALETSICNSLIDMYAKC 455

Query: 381 GVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGIL 440
           G ID +  +F  M +RD+VSWN+M+ G+  HGL  E   +F SM   G  P+ VTF+ ++
Sbjct: 456 GRIDLSRQVFDKMPARDIVSWNTMIAGYGIHGLGKEATTLFLSMKNQGFEPDDVTFICLI 515

Query: 441 SACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPD 500
           +ACSH+GLV+ G   F+ M   Y I P  EHY+ M++LL R G + EA +F+  +P + D
Sbjct: 516 AACSHSGLVTEGKHWFDTMTHKYGILPRMEHYICMVDLLARGGFLDEAYQFIQSMPLKAD 575

Query: 501 HRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRM 560
            R+WGALLGAC     N ++ +  ++ + +L P      V+L NI++A+GR  E  ++R+
Sbjct: 576 VRVWGALLGACRI-HKNIDLGKQVSRMIQKLGPEGTGNFVLLSNIFSAAGRFDEAAEVRI 634

Query: 561 DMGLKGVRKVPGCSWLMRNGGIQMFLSGDK 590
              +KG +K PGCSW+  NG +  F+ GD+
Sbjct: 635 IQKVKGFKKSPGCSWIEINGSLHAFVGGDQ 664



 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 119/521 (22%), Positives = 210/521 (40%), Gaps = 129/521 (24%)

Query: 15  TSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPER--- 71
           T+ I  Y +      A  +F  MP R+VV++NAML+G+  +G    A     +M +R   
Sbjct: 138 TALIDLYIRCARFGPAANVFAKMPMRDVVAWNAMLAGYANHGMYHHAIAHLLDMQDRGGL 197

Query: 72  --NVVSWTAMICGLADAGRVCEAR-------KLFEEMPERNVVSWNSMVVGLIRNGELNE 122
             N  +  +++  LA  G + +         + + +  E  V+   +++    +   L  
Sbjct: 198 RPNASTLVSLLPLLAQHGALFQGTSVHAYCLRAYLDQNEEQVLIGTALLDMYAKCKHLVY 257

Query: 123 ARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEME-------------------- 162
           A +VF+ M ++N ++W+A+I G+V C  M EA  LF++M                     
Sbjct: 258 ACRVFHGMTVRNEVTWSALIGGFVLCDRMTEAFNLFKDMLVEGMCFLSATSVASALRVCA 317

Query: 163 --------------------ERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTA 202
                                 ++    S++S Y +AG + E   LF  +  K+ +S+ A
Sbjct: 318 SLADLRMGTQLHALLAKSGIHADLTAGNSLLSMYAKAGLINEATMLFDEIAIKDTISYGA 377

Query: 203 MIGGFAWNGFHKESLLLFIEMK--------------------------GICDNGN----- 231
           ++ G+  NG  +E+ L+F +M+                          G C +G+     
Sbjct: 378 LLSGYVQNGKAEEAFLVFKKMQACNVQPDIATMVSLIPACSHLAALQHGRCSHGSVIIRG 437

Query: 232 -NCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFH 290
                  CNS+I+ Y + GR++ ++ +FD +P RD +SW +MI GY              
Sbjct: 438 LALETSICNSLIDMYAKCGRIDLSRQVFDKMPARDIVSWNTMIAGY-------------- 483

Query: 291 NMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDL 350
                        I GL +     EAT LF+ M+  G  P + TF  L  A   +  +  
Sbjct: 484 ------------GIHGLGK-----EATTLFLSMKNQGFEPDDVTFICLIAACSHSGLVTE 526

Query: 351 GRQIHCVLMKTESESDLILEN-----CLISMYAKCGVIDNAYNIFSNM-VSRDLVSWNSM 404
           G+        T +    IL       C++ + A+ G +D AY    +M +  D+  W ++
Sbjct: 527 GKH----WFDTMTHKYGILPRMEHYICMVDLLARGGFLDEAYQFIQSMPLKADVRVWGAL 582

Query: 405 VMGFSHH---GLANETLKVFESMLESGTHPNSVTFLGILSA 442
           +     H    L  +  ++ + +   GT  N V    I SA
Sbjct: 583 LGACRIHKNIDLGKQVSRMIQKLGPEGT-GNFVLLSNIFSA 622



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 56/191 (29%), Positives = 95/191 (49%), Gaps = 1/191 (0%)

Query: 263 VRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFME 322
           V+D   W   ++ +++ GQ++ A  +F  +P  DA A+ A+I        F  A  L+  
Sbjct: 30  VKDNKEWQQELEQHIARGQLALARQVFDRIPAPDARAYNALIRAYSWRGPFHAAIDLYRS 89

Query: 323 MRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGV 382
           M    VPP   TF  +  A  A A++  GR IH         +DL +   LI +Y +C  
Sbjct: 90  MLYFRVPPNKYTFPFVLKACSALADLCAGRTIHAHAAAVGLHTDLFVSTALIDLYIRCAR 149

Query: 383 IDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLE-SGTHPNSVTFLGILS 441
              A N+F+ M  RD+V+WN+M+ G+++HG+ +  +     M +  G  PN+ T + +L 
Sbjct: 150 FGPAANVFAKMPMRDVVAWNAMLAGYANHGMYHHAIAHLLDMQDRGGLRPNASTLVSLLP 209

Query: 442 ACSHAGLVSRG 452
             +  G + +G
Sbjct: 210 LLAQHGALFQG 220


>gi|15220337|ref|NP_172596.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122213654|sp|Q3E6Q1.1|PPR32_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g11290
 gi|332190592|gb|AEE28713.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 809

 Score =  290 bits (742), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 189/625 (30%), Positives = 308/625 (49%), Gaps = 55/625 (8%)

Query: 15  TSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNV- 73
           T  ++ + + G +DEA  +F+ +  +  V Y+ ML GF +   L +A + F  M   +V 
Sbjct: 73  TKLVSLFCRYGSVDEAARVFEPIDSKLNVLYHTMLKGFAKVSDLDKALQFFVRMRYDDVE 132

Query: 74  -----VSWTAMICGLADAGRVCEARK--LFEEMPERNVVSWNSMVVGLIRNGELNEARKV 126
                 ++   +CG     RV +     L +     ++ +   +     +  ++NEARKV
Sbjct: 133 PVVYNFTYLLKVCGDEAELRVGKEIHGLLVKSGFSLDLFAMTGLENMYAKCRQVNEARKV 192

Query: 127 FNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERN--------------------- 165
           F+ MP ++++SWN ++AGY +  M   A+ + + M E N                     
Sbjct: 193 FDRMPERDLVSWNTIVAGYSQNGMARMALEMVKSMCEENLKPSFITIVSVLPAVSALRLI 252

Query: 166 ------------------VVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGF 207
                             V   T+++  Y + G +E    LF  M  +NVVSW +MI  +
Sbjct: 253 SVGKEIHGYAMRSGFDSLVNISTALVDMYAKCGSLETARQLFDGMLERNVVSWNSMIDAY 312

Query: 208 AWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFD-TVPV--- 263
             N   KE++L+F +M    D G      S    ++     G LE  + +   +V +   
Sbjct: 313 VQNENPKEAMLIFQKM---LDEGVKPTDVSVMGALHACADLGDLERGRFIHKLSVELGLD 369

Query: 264 RDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEM 323
           R+     S+I  Y    +V  A  +F  +  R  V+W AMI G  QN   ++A   F +M
Sbjct: 370 RNVSVVNSLISMYCKCKEVDTAASMFGKLQSRTLVSWNAMILGFAQNGRPIDALNYFSQM 429

Query: 324 RAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVI 383
           R+  V P   T+  +  A    +     + IH V+M++  + ++ +   L+ MYAKCG I
Sbjct: 430 RSRTVKPDTFTYVSVITAIAELSITHHAKWIHGVVMRSCLDKNVFVTTALVDMYAKCGAI 489

Query: 384 DNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSAC 443
             A  IF  M  R + +WN+M+ G+  HG     L++FE M +    PN VTFL ++SAC
Sbjct: 490 MIARLIFDMMSERHVTTWNAMIDGYGTHGFGKAALELFEEMQKGTIKPNGVTFLSVISAC 549

Query: 444 SHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRI 503
           SH+GLV  G + F  M + Y I+   +HY +M++LLGRAG++ EA +F++++P +P   +
Sbjct: 550 SHSGLVEAGLKCFYMMKENYSIELSMDHYGAMVDLLGRAGRLNEAWDFIMQMPVKPAVNV 609

Query: 504 WGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMG 563
           +GA+LGAC     N   AE AA+RL EL+P +   HV+L NIY A+    +  ++R+ M 
Sbjct: 610 YGAMLGACQI-HKNVNFAEKAAERLFELNPDDGGYHVLLANIYRAASMWEKVGQVRVSML 668

Query: 564 LKGVRKVPGCSWLMRNGGIQMFLSG 588
            +G+RK PGCS +     +  F SG
Sbjct: 669 RQGLRKTPGCSMVEIKNEVHSFFSG 693



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 92/358 (25%), Positives = 154/358 (43%), Gaps = 55/358 (15%)

Query: 4   RNHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARR 63
           R+   SLV   T+ +  Y+K G ++ A+ LF  M +RNVVS+N+M+  ++QN    EA  
Sbjct: 264 RSGFDSLVNISTALVDMYAKCGSLETARQLFDGMLERNVVSWNSMIDAYVQNENPKEAML 323

Query: 64  LFEEMPERNV----VSWTAMICGLADAGRVCEAR---KLFEEMP-ERNVVSWNSMVVGLI 115
           +F++M +  V    VS    +   AD G +   R   KL  E+  +RNV   NS++    
Sbjct: 324 IFQKMLDEGVKPTDVSVMGALHACADLGDLERGRFIHKLSVELGLDRNVSVVNSLISMYC 383

Query: 116 RNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEER----------- 164
           +  E++ A  +F  +  + ++SWNAMI G+ +     +A+  F +M  R           
Sbjct: 384 KCKEVDTAASMFGKLQSRTLVSWNAMILGFAQNGRPIDALNYFSQMRSRTVKPDTFTYVS 443

Query: 165 ----------------------------NVVTWTSMISGYCRAGEVEEGYCLFRRMPRKN 196
                                       NV   T+++  Y + G +     +F  M  ++
Sbjct: 444 VITAIAELSITHHAKWIHGVVMRSCLDKNVFVTTALVDMYAKCGAIMIARLIFDMMSERH 503

Query: 197 VVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQN 256
           V +W AMI G+  +GF K +L LF EM+      N        S+I+     G +E    
Sbjct: 504 VTTWNAMIDGYGTHGFGKAALELFEEMQKGTIKPNGVTFL---SVISACSHSGLVEAGLK 560

Query: 257 LFDTVPVRDEIS-----WTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQ 309
            F  +     I      + +M+D     G+++ A+     MP + AV     + G  Q
Sbjct: 561 CFYMMKENYSIELSMDHYGAMVDLLGRAGRLNEAWDFIMQMPVKPAVNVYGAMLGACQ 618



 Score = 42.7 bits (99), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 42/191 (21%), Positives = 80/191 (41%), Gaps = 27/191 (14%)

Query: 352 RQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHH 411
           RQI  ++ K     +   +  L+S++ + G +D A  +F  + S+  V +++M+ GF+  
Sbjct: 54  RQILPLVFKNGLYQEHFFQTKLVSLFCRYGSVDEAARVFEPIDSKLNVLYHTMLKGFAKV 113

Query: 412 GLANETLKVFESMLESGTHPNSVTFLGILSACS-----------HAGLVSRGWELFNAMF 460
              ++ L+ F  M      P    F  +L  C            H  LV  G+ L     
Sbjct: 114 SDLDKALQFFVRMRYDDVEPVVYNFTYLLKVCGDEAELRVGKEIHGLLVKSGFSL----- 168

Query: 461 DVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCE-GNAE 519
           D++ +         + N+  +  ++ EA +   R+P E D   W  ++   G+ + G A 
Sbjct: 169 DLFAM-------TGLENMYAKCRQVNEARKVFDRMP-ERDLVSWNTIVA--GYSQNGMAR 218

Query: 520 IAEHAAKRLLE 530
           +A    K + E
Sbjct: 219 MALEMVKSMCE 229


>gi|449476227|ref|XP_004154678.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g22410, mitochondrial-like [Cucumis sativus]
          Length = 681

 Score =  290 bits (742), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 164/461 (35%), Positives = 251/461 (54%), Gaps = 2/461 (0%)

Query: 139 NAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVV 198
           NA+I   V C  +  A  LF+E   R++V+W S+I+GY R G  +E + L+ +M   NV+
Sbjct: 194 NAIIHVLVSCGELLAARKLFDESCVRDLVSWNSIINGYVRCGLADEAFDLYYKMGELNVM 253

Query: 199 SWTAMIGGFAWNGFHKESLLLFIEM-KGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNL 257
                + G        E+L L  ++ + I + G N  V   N++++ YI+   +E A+ L
Sbjct: 254 PDEVTMIGVVSASAQLENLALGRKLHQSIEEMGLNLTVPLANALMDMYIKCKNIEAAKIL 313

Query: 258 FDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEAT 317
           F+ +  +  +SWT+M+ GY   G + +A  LF+ MP++D V W A+I G VQ +   EA 
Sbjct: 314 FENMTKKTVVSWTTMVIGYAKFGLLESAVRLFNEMPEKDVVLWNALIGGFVQAKRSKEAL 373

Query: 318 YLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMY 377
            LF EM+A  V P   T      A      +D+G  +H  + K     ++ L   L+ MY
Sbjct: 374 ALFHEMQASSVAPDKITVVNCLSACSQLGALDVGIWMHHYVDKHNLTMNVALGTALVDMY 433

Query: 378 AKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFL 437
           AKCG I  A  +F  M  R+ ++W +++ G + HG  +  +  F  M+  G  P+ +TF+
Sbjct: 434 AKCGNIKKAIQVFEEMPGRNSLTWTAIICGLALHGQPHAAISYFSEMISIGLVPDEITFI 493

Query: 438 GILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPF 497
           G+LSAC H GLV +G + F  M   Y I P  +HY  +++LLGRAG ++EAEE +  +PF
Sbjct: 494 GVLSACCHGGLVDQGRDYFYQMTSKYGISPKLKHYSCLVDLLGRAGFLEEAEELIRSMPF 553

Query: 498 EPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHK 557
           EPD  +WGAL        GN  + E AA +LLELDP +   +V+L N+Y  +    +  K
Sbjct: 554 EPDAVVWGALFFGSRI-HGNVHMGERAASKLLELDPHDGGIYVLLANMYGDANMWEQARK 612

Query: 558 LRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
           +R  M  +GV K PGCS +  NG +  F+  DK   Q  +I
Sbjct: 613 VRKMMEERGVEKTPGCSSIEMNGLVYDFIIRDKSHPQSEKI 653



 Score =  158 bits (399), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 121/424 (28%), Positives = 197/424 (46%), Gaps = 27/424 (6%)

Query: 33  LFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEA 92
           + QL    ++  +NA++   +  G L  AR+LF+E   R++VSW ++I G    G   EA
Sbjct: 181 VIQLGFDSDLFVHNAIIHVLVSCGELLAARKLFDESCVRDLVSWNSIINGYVRCGLADEA 240

Query: 93  RKLFEEMPERNVVSWNSMVVGLIRNG----ELNEARKVFNSMPIK----NVISWNAMIAG 144
             L+ +M E NV+     ++G++        L   RK+  S+        V   NA++  
Sbjct: 241 FDLYYKMGELNVMPDEVTMIGVVSASAQLENLALGRKLHQSIEEMGLNLTVPLANALMDM 300

Query: 145 YVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMI 204
           Y++C  +  A +LFE M ++ VV+WT+M+ GY + G +E    LF  MP K+VV W A+I
Sbjct: 301 YIKCKNIEAAKILFENMTKKTVVSWTTMVIGYAKFGLLESAVRLFNEMPEKDVVLWNALI 360

Query: 205 GGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLE---------EAQ 255
           GGF      KE+L LF EM+      +   V +C S  +   + G L+         +  
Sbjct: 361 GGFVQAKRSKEALALFHEMQASSVAPDKITVVNCLSACS---QLGALDVGIWMHHYVDKH 417

Query: 256 NLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVE 315
           NL   V +      T+++D Y   G +  A  +F  MP R+++ WTA+I GL  +     
Sbjct: 418 NLTMNVALG-----TALVDMYAKCGNIKKAIQVFEEMPGRNSLTWTAIICGLALHGQPHA 472

Query: 316 ATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQ-IHCVLMKTESESDLILENCLI 374
           A   F EM + G+ P   TF  +  A      +D GR   + +  K      L   +CL+
Sbjct: 473 AISYFSEMISIGLVPDEITFIGVLSACCHGGLVDQGRDYFYQMTSKYGISPKLKHYSCLV 532

Query: 375 SMYAKCGVIDNAYNIFSNM-VSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNS 433
            +  + G ++ A  +  +M    D V W ++  G   HG  +   +    +LE   H   
Sbjct: 533 DLLGRAGFLEEAEELIRSMPFEPDAVVWGALFFGSRIHGNVHMGERAASKLLELDPHDGG 592

Query: 434 VTFL 437
           +  L
Sbjct: 593 IYVL 596



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 92/349 (26%), Positives = 156/349 (44%), Gaps = 56/349 (16%)

Query: 11  VVHLTSSITKYSKRGFIDEAKALFQLMPQRNV----VSYNAMLSGFLQNGRLSEARRLFE 66
           +V   S I  Y + G  DEA  L+  M + NV    V+   ++S   Q   L+  R+L +
Sbjct: 221 LVSWNSIINGYVRCGLADEAFDLYYKMGELNVMPDEVTMIGVVSASAQLENLALGRKLHQ 280

Query: 67  EMPERNVVSWTAMICGLADAGRVCE----ARKLFEEMPERNVVSWNSMVVGLIRNGELNE 122
            + E  +     +   L D    C+    A+ LFE M ++ VVSW +MV+G  + G L  
Sbjct: 281 SIEEMGLNLTVPLANALMDMYIKCKNIEAAKILFENMTKKTVVSWTTMVIGYAKFGLLES 340

Query: 123 ARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEER------------------ 164
           A ++FN MP K+V+ WNA+I G+V+     EA+ LF EM+                    
Sbjct: 341 AVRLFNEMPEKDVVLWNALIGGFVQAKRSKEALALFHEMQASSVAPDKITVVNCLSACSQ 400

Query: 165 ---------------------NVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAM 203
                                NV   T+++  Y + G +++   +F  MP +N ++WTA+
Sbjct: 401 LGALDVGIWMHHYVDKHNLTMNVALGTALVDMYAKCGNIKKAIQVFEEMPGRNSLTWTAI 460

Query: 204 IGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPV 263
           I G A +G    ++  F EM  I   G   +  +   +++     G +++ ++ F  +  
Sbjct: 461 ICGLALHGQPHAAISYFSEMISI---GLVPDEITFIGVLSACCHGGLVDQGRDYFYQMTS 517

Query: 264 RDEIS-----WTSMIDGYLSVGQVSNAYYLFHNMP-DRDAVAWTAMISG 306
           +  IS     ++ ++D     G +  A  L  +MP + DAV W A+  G
Sbjct: 518 KYGISPKLKHYSCLVDLLGRAGFLEEAEELIRSMPFEPDAVVWGALFFG 566



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 67/251 (26%), Positives = 111/251 (44%), Gaps = 49/251 (19%)

Query: 5   NHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRL 64
           N  K  VV  T+ +  Y+K G ++ A  LF  MP+++VV +NA++ GF+Q  R  EA  L
Sbjct: 316 NMTKKTVVSWTTMVIGYAKFGLLESAVRLFNEMPEKDVVLWNALIGGFVQAKRSKEALAL 375

Query: 65  FEEM------PER---------------------------------NVVSWTAMICGLAD 85
           F EM      P++                                 NV   TA++   A 
Sbjct: 376 FHEMQASSVAPDKITVVNCLSACSQLGALDVGIWMHHYVDKHNLTMNVALGTALVDMYAK 435

Query: 86  AGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGY 145
            G + +A ++FEEMP RN ++W +++ GL  +G+ + A   F+ M    ++       G 
Sbjct: 436 CGNIKKAIQVFEEMPGRNSLTWTAIICGLALHGQPHAAISYFSEMISIGLVPDEITFIGV 495

Query: 146 VECCMMG----EAIVLFEEMEERNVVT-----WTSMISGYCRAGEVEEGYCLFRRMP-RK 195
           +  C  G    +    F +M  +  ++     ++ ++    RAG +EE   L R MP   
Sbjct: 496 LSACCHGGLVDQGRDYFYQMTSKYGISPKLKHYSCLVDLLGRAGFLEEAEELIRSMPFEP 555

Query: 196 NVVSWTAMIGG 206
           + V W A+  G
Sbjct: 556 DAVVWGALFFG 566



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 83/326 (25%), Positives = 141/326 (43%), Gaps = 59/326 (18%)

Query: 288 LFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEM-RAHGVPPLNATFSVLFGAAGA-- 344
           + +N  + +  +W   I G V++E  + A  L+  M R     P N T+ +LF       
Sbjct: 110 ILNNAANLNXFSWNMAIRGYVESENPINAVLLYRNMLRKGSAIPDNYTYPLLFKVCAGFS 169

Query: 345 ---TANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSW 401
              TAN  LG  I         +SDL + N +I +   CG +  A  +F     RDLVSW
Sbjct: 170 LSWTANEILGHVIQLGF-----DSDLFVHNAIIHVLVSCGELLAARKLFDESCVRDLVSW 224

Query: 402 NSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELF----- 456
           NS++ G+   GLA+E   ++  M E    P+ VT +G++SA +    ++ G +L      
Sbjct: 225 NSIINGYVRCGLADEAFDLYYKMGELNVMPDEVTMIGVVSASAQLENLALGRKLHQSIEE 284

Query: 457 ----------NAMFDVY---------KI------QPGPEHYVSMINLLGRAGKIKEAEEF 491
                     NA+ D+Y         KI      +     + +M+    + G ++ A   
Sbjct: 285 MGLNLTVPLANALMDMYIKCKNIEAAKILFENMTKKTVVSWTTMVIGYAKFGLLESAVRL 344

Query: 492 VLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLN-APAHVVLCNIYAASG 550
              +P E D  +W AL+G  GF +  A+ ++ A     E+   + AP  + + N  +A  
Sbjct: 345 FNEMP-EKDVVLWNALIG--GFVQ--AKRSKEALALFHEMQASSVAPDKITVVNCLSACS 399

Query: 551 R------------HVEEHKLRMDMGL 564
           +            +V++H L M++ L
Sbjct: 400 QLGALDVGIWMHHYVDKHNLTMNVAL 425


>gi|225450928|ref|XP_002280725.1| PREDICTED: pentatricopeptide repeat-containing protein At3g05340
           [Vitis vinifera]
          Length = 656

 Score =  290 bits (742), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 178/542 (32%), Positives = 291/542 (53%), Gaps = 17/542 (3%)

Query: 71  RNV-VSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNS 129
           RNV V W +++   +  G + +A K+F+ MP ++ +SWNS + GL+ NG++    +VF  
Sbjct: 86  RNVIVVWNSLLSMYSRCGELRDATKVFDHMPMKDTISWNSRISGLLGNGDIEMGFRVFKQ 145

Query: 130 MPIKNVISWNAMIAGYV-------ECCMMGEAI--VLFEEMEERNVVTWTSMISGYCRAG 180
           +    +  ++      V       E C + + I  ++F    ER +    ++I+ Y R G
Sbjct: 146 LYESGIYQFDQATLTTVLTACDKPEFCYVSKMIHSLVFLYGYEREITVGNALITSYFRCG 205

Query: 181 EVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNS 240
               G  +F  M  KNVV+WTA+I G +   F++ESL LF +M+    + N+    S   
Sbjct: 206 CCSSGRRVFDEMSEKNVVTWTAVISGLSQGQFYEESLKLFGKMRDGPVDPNSLTYLSSLM 265

Query: 241 MINGY--IRFGRLEEAQNLFDTVPVRDEISWTS-MIDGYLSVGQVSNAYYLFHNMPDRDA 297
             +G   IR GR  +   L   + V  ++   S ++D Y   G + +A+ +F +  + D 
Sbjct: 266 ACSGLQAIREGR--QIHGLVWKLGVHFDLCIESALMDMYSKCGSLEDAWKIFESAEEVDE 323

Query: 298 VAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCV 357
           V+ T ++ GL QN    E+  +F++M  +GV       S + G  G   ++ LG+QIH +
Sbjct: 324 VSMTVILVGLAQNGFEEESIQVFVKMVKNGVVIDPNMISAILGVFGIDTSLALGKQIHSL 383

Query: 358 LMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANET 417
           ++K    S+  + N LI+MY+KCG +D++  IF  M  R+ VSWNSM+  F+ HG  +  
Sbjct: 384 IIKKSFGSNYFVNNGLINMYSKCGDLDDSIKIFCWMPQRNSVSWNSMIAAFARHGNGSRA 443

Query: 418 LKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMIN 477
           L+++E M   G  P  VTFL +L AC+H GLV +G     +M   Y I P  EHY  +++
Sbjct: 444 LQLYEEMRLEGVWPTDVTFLSLLHACAHVGLVEKGMGFLESMAKDYGIGPRMEHYACVVD 503

Query: 478 LLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAP 537
           ++GRAG + EA++F+ RLP +P   +W ALLGAC    GN+E+ ++AA +L    P +  
Sbjct: 504 MMGRAGLLNEAKKFIERLPEKPGILVWQALLGACSI-HGNSEMGKYAANQLFLQAPESPA 562

Query: 538 AHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAE 597
            +++L NIY++ G+  E  +    M   GV K  G SW+     I  F+  D++    AE
Sbjct: 563 PYILLANIYSSEGKWKERARTIKKMKDMGVTKETGISWIEIEKQIHSFVVEDRMHPH-AE 621

Query: 598 IL 599
           I+
Sbjct: 622 II 623



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 120/544 (22%), Positives = 224/544 (41%), Gaps = 90/544 (16%)

Query: 4   RNHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARR 63
           R++ ++++V   S ++ YS+ G + +A  +F  MP ++ +S+N+ +SG L NG +    R
Sbjct: 82  RDNLRNVIVVWNSLLSMYSRCGELRDATKVFDHMPMKDTISWNSRISGLLGNGDIEMGFR 141

Query: 64  LFEEMPERNVVSWT----AMICGLADAGRVCEARKLFEEMP-----ERNVVSWNSMVVGL 114
           +F+++ E  +  +       +    D    C   K+   +      ER +   N+++   
Sbjct: 142 VFKQLYESGIYQFDQATLTTVLTACDKPEFCYVSKMIHSLVFLYGYEREITVGNALITSY 201

Query: 115 IRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNV-------- 166
            R G  +  R+VF+ M  KNV++W A+I+G  +     E++ LF +M +  V        
Sbjct: 202 FRCGCCSSGRRVFDEMSEKNVVTWTAVISGLSQGQFYEESLKLFGKMRDGPVDPNSLTYL 261

Query: 167 --------------------VTW-----------TSMISGYCRAGEVEEGYCLFRRMPRK 195
                               + W           ++++  Y + G +E+ + +F      
Sbjct: 262 SSLMACSGLQAIREGRQIHGLVWKLGVHFDLCIESALMDMYSKCGSLEDAWKIFESAEEV 321

Query: 196 NVVSWTAMIGGFAWNGFHKESLLLFIEM--KGICDNGNNCNVQSCNSMINGYIRFGRLEE 253
           + VS T ++ G A NGF +ES+ +F++M   G+  + N  +       I+  +  G+   
Sbjct: 322 DEVSMTVILVGLAQNGFEEESIQVFVKMVKNGVVIDPNMISAILGVFGIDTSLALGKQIH 381

Query: 254 AQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELF 313
           +  +  +      ++   +I+ Y   G + ++  +F  MP R++V+W +MI+   ++   
Sbjct: 382 SLIIKKSFGSNYFVN-NGLINMYSKCGDLDDSIKIFCWMPQRNSVSWNSMIAAFARHGNG 440

Query: 314 VEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCL 373
             A  L+ EMR  GV P + TF  L  A      ++ G                     L
Sbjct: 441 SRALQLYEEMRLEGVWPTDVTFLSLLHACAHVGLVEKGMGF------------------L 482

Query: 374 ISMYAKCGVIDNA--YNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHP 431
            SM    G+      Y    +M+ R               GL NE  K  E + E    P
Sbjct: 483 ESMAKDYGIGPRMEHYACVVDMMGR--------------AGLLNEAKKFIERLPEK---P 525

Query: 432 NSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEF 491
             + +  +L ACS  G    G    N +F      P P  Y+ + N+    GK KE    
Sbjct: 526 GILVWQALLGACSIHGNSEMGKYAANQLFLQAPESPAP--YILLANIYSSEGKWKERART 583

Query: 492 VLRL 495
           + ++
Sbjct: 584 IKKM 587


>gi|296083884|emb|CBI24272.3| unnamed protein product [Vitis vinifera]
          Length = 729

 Score =  290 bits (742), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 187/571 (32%), Positives = 286/571 (50%), Gaps = 37/571 (6%)

Query: 48  MLSGFLQNGRLSEARRLFEEMPERNVVSWTA---MICGLADAGRVCEARKLFEEM----- 99
           +L  + Q G + +ARR+F++M ERNV SWTA   M CGL D     E  KLF  M     
Sbjct: 51  LLEVYCQTGCVEDARRMFDKMSERNVFSWTAIMEMYCGLGDYE---ETIKLFYLMVNEGV 107

Query: 100 -PERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAG-----YVECCMMGE 153
            P+  V          ++N  +   + V++ M +      N+ + G     +++C  M  
Sbjct: 108 RPDHFVFPKVFKACSELKNYRV--GKDVYDYM-LSIGFEGNSCVKGSILDMFIKCGRMDI 164

Query: 154 AIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFH 213
           A   FEE+E ++V  W  M+SGY   GE ++   +FR+M  + V   +  I   A +   
Sbjct: 165 ARRFFEEIEFKDVFMWNIMVSGYTSKGEFKKALNVFRKMVLEGVKPNSITIAS-AVSACT 223

Query: 214 KESLLLF-IEMKGICDNGN--NCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWT 270
             SLL    E+ G C      + ++   NS+++ Y +   +E A+  F  +   D +SW 
Sbjct: 224 NLSLLRHGREIHGYCIKVEELDSDLLVGNSLVDYYAKCRSVEVARRKFGMIKQTDLVSWN 283

Query: 271 SM--IDGYLSVGQVSNAYYLFHNM----------PDRDAVAWTAMISGLVQNELFVEATY 318
           +M  + G+   G    A   F  M            RD V W ++IS   Q+   V A  
Sbjct: 284 AMLAVTGFTQYGDGKAALEFFQRMHIACSVFSELSTRDVVVWNSIISACAQSGRSVNALD 343

Query: 319 LFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYA 378
           L  EM    V     T      A    A +  G++IH  +++   ++   + N LI MY 
Sbjct: 344 LLREMNLSNVEVNTVTMVSALPACSKLAALRQGKEIHQFIIRCGLDTCNFILNSLIDMYG 403

Query: 379 KCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLG 438
           +CG I  +  IF  M  RDLVSWN M+  +  HG   + + +F+     G  PN +TF  
Sbjct: 404 RCGSIQKSRRIFDLMPQRDLVSWNVMISVYGMHGFGMDAVNLFQQFRTMGLKPNHITFTN 463

Query: 439 ILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFE 498
           +LSACSH+GL+  GW+ F  M   Y + P  E Y  M++LL RAG+  E  EF+ ++PFE
Sbjct: 464 LLSACSHSGLIEEGWKYFKMMKTEYAMDPAVEQYACMVDLLSRAGQFNETLEFIEKMPFE 523

Query: 499 PDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKL 558
           P+  +WG+LLGAC     N ++AE+AA+ L EL+P ++  +V++ NIY+A+GR  +  K+
Sbjct: 524 PNAAVWGSLLGACRI-HCNPDLAEYAARYLFELEPQSSGNYVLMANIYSAAGRWEDAAKI 582

Query: 559 RMDMGLKGVRKVPGCSWLMRNGGIQMFLSGD 589
           R  M  +GV K PGCSW+     +  F+ GD
Sbjct: 583 RCLMKERGVTKPPGCSWIEVKRKLHSFVVGD 613



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 130/563 (23%), Positives = 214/563 (38%), Gaps = 133/563 (23%)

Query: 21  YSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEM------PERNVV 74
           Y + G +++A+ +F  M +RNV S+ A++  +   G   E  +LF  M      P+  V 
Sbjct: 55  YCQTGCVEDARRMFDKMSERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVF 114

Query: 75  SWTAMICG---------------------------------LADAGRVCEARKLFEEMPE 101
                 C                                      GR+  AR+ FEE+  
Sbjct: 115 PKVFKACSELKNYRVGKDVYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEF 174

Query: 102 RNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCM------MGEAI 155
           ++V  WN MV G    GE  +A  VF  M ++ V   +  IA  V  C        G  I
Sbjct: 175 KDVFMWNIMVSGYTSKGEFKKALNVFRKMVLEGVKPNSITIASAVSACTNLSLLRHGREI 234

Query: 156 ----VLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIG--GFAW 209
               +  EE++  +++   S++  Y +   VE     F  + + ++VSW AM+   GF  
Sbjct: 235 HGYCIKVEELDS-DLLVGNSLVDYYAKCRSVEVARRKFGMIKQTDLVSWNAMLAVTGFTQ 293

Query: 210 NGFHKESLLLFIEMKGICDNGNNCNVQSC---NSMINGYIRFGRLEEAQNLF-------- 258
            G  K +L  F  M   C   +  + +     NS+I+   + GR   A +L         
Sbjct: 294 YGDGKAALEFFQRMHIACSVFSELSTRDVVVWNSIISACAQSGRSVNALDLLREMNLSNV 353

Query: 259 --------DTVPVRDEIS-----------------------WTSMIDGYLSVGQVSNAYY 287
                     +P   +++                         S+ID Y   G +  +  
Sbjct: 354 EVNTVTMVSALPACSKLAALRQGKEIHQFIIRCGLDTCNFILNSLIDMYGRCGSIQKSRR 413

Query: 288 LFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATAN 347
           +F  MP RD V+W  MIS    +   ++A  LF + R  G+ P + TF+ L  A   +  
Sbjct: 414 IFDLMPQRDLVSWNVMISVYGMHGFGMDAVNLFQQFRTMGLKPNHITFTNLLSACSHSGL 473

Query: 348 IDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMG 407
           I+ G + +  +MKTE   D  +E                              +  MV  
Sbjct: 474 IEEGWK-YFKMMKTEYAMDPAVEQ-----------------------------YACMVDL 503

Query: 408 FSHHGLANETLKVFESMLESGTHPNSVTFLGILSACS-HAGLVSRGWELFNAMFDVYKIQ 466
            S  G  NETL+  E M      PN+  +  +L AC  H    +     + A + +++++
Sbjct: 504 LSRAGQFNETLEFIEKM---PFEPNAAVWGSLLGACRIHC---NPDLAEYAARY-LFELE 556

Query: 467 PGPE-HYVSMINLLGRAGKIKEA 488
           P    +YV M N+   AG+ ++A
Sbjct: 557 PQSSGNYVLMANIYSAAGRWEDA 579



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 62/232 (26%), Positives = 108/232 (46%), Gaps = 55/232 (23%)

Query: 16  SSITKYSKRGFIDEAKALFQLMPQRNVVSYNAML--SGFLQNG----------RLSEARR 63
           S +  Y+K   ++ A+  F ++ Q ++VS+NAML  +GF Q G          R+  A  
Sbjct: 253 SLVDYYAKCRSVEVARRKFGMIKQTDLVSWNAMLAVTGFTQYGDGKAALEFFQRMHIACS 312

Query: 64  LFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMP----ERNVVS------------- 106
           +F E+  R+VV W ++I   A +GR   A  L  EM     E N V+             
Sbjct: 313 VFSELSTRDVVVWNSIISACAQSGRSVNALDLLREMNLSNVEVNTVTMVSALPACSKLAA 372

Query: 107 ----------------------WNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAG 144
                                  NS++    R G + ++R++F+ MP ++++SWN MI+ 
Sbjct: 373 LRQGKEIHQFIIRCGLDTCNFILNSLIDMYGRCGSIQKSRRIFDLMPQRDLVSWNVMISV 432

Query: 145 YVECCMMGEAIVLFEEME----ERNVVTWTSMISGYCRAGEVEEGYCLFRRM 192
           Y       +A+ LF++      + N +T+T+++S    +G +EEG+  F+ M
Sbjct: 433 YGMHGFGMDAVNLFQQFRTMGLKPNHITFTNLLSACSHSGLIEEGWKYFKMM 484



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 37/164 (22%), Positives = 78/164 (47%), Gaps = 2/164 (1%)

Query: 347 NIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVM 406
           N+ LG Q+H  L+    +    L + L+ +Y + G +++A  +F  M  R++ SW +++ 
Sbjct: 25  NLRLGFQVHAQLVVNGVDVCEFLGSRLLEVYCQTGCVEDARRMFDKMSERNVFSWTAIME 84

Query: 407 GFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQ 466
            +   G   ET+K+F  M+  G  P+   F  +  ACS       G ++++ M  +   +
Sbjct: 85  MYCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVFKACSELKNYRVGKDVYDYMLSI-GFE 143

Query: 467 PGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGA 510
                  S++++  + G++  A  F   + F+ D  +W  ++  
Sbjct: 144 GNSCVKGSILDMFIKCGRMDIARRFFEEIEFK-DVFMWNIMVSG 186



 Score = 59.7 bits (143), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 49/185 (26%), Positives = 88/185 (47%), Gaps = 13/185 (7%)

Query: 14  LTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMP---- 69
           L S I  Y + G I +++ +F LMPQR++VS+N M+S +  +G   +A  LF++      
Sbjct: 395 LNSLIDMYGRCGSIQKSRRIFDLMPQRDLVSWNVMISVYGMHGFGMDAVNLFQQFRTMGL 454

Query: 70  ERNVVSWTAMICGLADAGRVCEARKLFEEMP-----ERNVVSWNSMVVGLIRNGELNEAR 124
           + N +++T ++   + +G + E  K F+ M      +  V  +  MV  L R G+ NE  
Sbjct: 455 KPNHITFTNLLSACSHSGLIEEGWKYFKMMKTEYAMDPAVEQYACMVDLLSRAGQFNETL 514

Query: 125 KVFNSMPIK-NVISWNAMIAGYVECC---MMGEAIVLFEEMEERNVVTWTSMISGYCRAG 180
           +    MP + N   W +++      C   +   A     E+E ++   +  M + Y  AG
Sbjct: 515 EFIEKMPFEPNAAVWGSLLGACRIHCNPDLAEYAARYLFELEPQSSGNYVLMANIYSAAG 574

Query: 181 EVEEG 185
             E+ 
Sbjct: 575 RWEDA 579


>gi|449442687|ref|XP_004139112.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Cucumis sativus]
          Length = 681

 Score =  290 bits (742), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 164/461 (35%), Positives = 251/461 (54%), Gaps = 2/461 (0%)

Query: 139 NAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVV 198
           NA+I   V C  +  A  LF+E   R++V+W S+I+GY R G  +E + L+ +M   NV+
Sbjct: 194 NAIIHVLVSCGELLAARKLFDESCVRDLVSWNSIINGYVRCGLADEAFDLYYKMGELNVM 253

Query: 199 SWTAMIGGFAWNGFHKESLLLFIEM-KGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNL 257
                + G        E+L L  ++ + I + G N  V   N++++ YI+   +E A+ L
Sbjct: 254 PDEVTMIGVVSASAQLENLALGRKLHQSIEEMGLNLTVPLANALMDMYIKCKNIEAAKIL 313

Query: 258 FDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEAT 317
           F+ +  +  +SWT+M+ GY   G + +A  LF+ MP++D V W A+I G VQ +   EA 
Sbjct: 314 FENMTKKTVVSWTTMVIGYAKFGLLESAVRLFNEMPEKDVVLWNALIGGFVQAKRSKEAL 373

Query: 318 YLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMY 377
            LF EM+A  V P   T      A      +D+G  +H  + K     ++ L   L+ MY
Sbjct: 374 ALFHEMQASSVAPDKITVVNCLSACSQLGALDVGIWMHHYVDKHNLTMNVALGTALVDMY 433

Query: 378 AKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFL 437
           AKCG I  A  +F  M  R+ ++W +++ G + HG  +  +  F  M+  G  P+ +TF+
Sbjct: 434 AKCGNIKKAIQVFEEMPGRNSLTWTAIICGLALHGQPHAAISYFSEMISIGLVPDEITFI 493

Query: 438 GILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPF 497
           G+LSAC H GLV +G + F  M   Y I P  +HY  +++LLGRAG ++EAEE +  +PF
Sbjct: 494 GVLSACCHGGLVDQGRDYFYQMTSKYGISPKLKHYSCLVDLLGRAGFLEEAEELIRSMPF 553

Query: 498 EPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHK 557
           EPD  +WGAL        GN  + E AA +LLELDP +   +V+L N+Y  +    +  K
Sbjct: 554 EPDAVVWGALFFGSRI-HGNVHMGERAASKLLELDPHDGGIYVLLANMYGDANMWEQARK 612

Query: 558 LRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
           +R  M  +GV K PGCS +  NG +  F+  DK   Q  +I
Sbjct: 613 VRKMMEERGVEKTPGCSSIEMNGLVYDFIIRDKSHPQSEKI 653



 Score =  158 bits (399), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 121/424 (28%), Positives = 197/424 (46%), Gaps = 27/424 (6%)

Query: 33  LFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEA 92
           + QL    ++  +NA++   +  G L  AR+LF+E   R++VSW ++I G    G   EA
Sbjct: 181 VIQLGFDSDLFVHNAIIHVLVSCGELLAARKLFDESCVRDLVSWNSIINGYVRCGLADEA 240

Query: 93  RKLFEEMPERNVVSWNSMVVGLIRNG----ELNEARKVFNSMPIK----NVISWNAMIAG 144
             L+ +M E NV+     ++G++        L   RK+  S+        V   NA++  
Sbjct: 241 FDLYYKMGELNVMPDEVTMIGVVSASAQLENLALGRKLHQSIEEMGLNLTVPLANALMDM 300

Query: 145 YVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMI 204
           Y++C  +  A +LFE M ++ VV+WT+M+ GY + G +E    LF  MP K+VV W A+I
Sbjct: 301 YIKCKNIEAAKILFENMTKKTVVSWTTMVIGYAKFGLLESAVRLFNEMPEKDVVLWNALI 360

Query: 205 GGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLE---------EAQ 255
           GGF      KE+L LF EM+      +   V +C S  +   + G L+         +  
Sbjct: 361 GGFVQAKRSKEALALFHEMQASSVAPDKITVVNCLSACS---QLGALDVGIWMHHYVDKH 417

Query: 256 NLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVE 315
           NL   V +      T+++D Y   G +  A  +F  MP R+++ WTA+I GL  +     
Sbjct: 418 NLTMNVALG-----TALVDMYAKCGNIKKAIQVFEEMPGRNSLTWTAIICGLALHGQPHA 472

Query: 316 ATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQ-IHCVLMKTESESDLILENCLI 374
           A   F EM + G+ P   TF  +  A      +D GR   + +  K      L   +CL+
Sbjct: 473 AISYFSEMISIGLVPDEITFIGVLSACCHGGLVDQGRDYFYQMTSKYGISPKLKHYSCLV 532

Query: 375 SMYAKCGVIDNAYNIFSNM-VSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNS 433
            +  + G ++ A  +  +M    D V W ++  G   HG  +   +    +LE   H   
Sbjct: 533 DLLGRAGFLEEAEELIRSMPFEPDAVVWGALFFGSRIHGNVHMGERAASKLLELDPHDGG 592

Query: 434 VTFL 437
           +  L
Sbjct: 593 IYVL 596



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 92/349 (26%), Positives = 156/349 (44%), Gaps = 56/349 (16%)

Query: 11  VVHLTSSITKYSKRGFIDEAKALFQLMPQRNV----VSYNAMLSGFLQNGRLSEARRLFE 66
           +V   S I  Y + G  DEA  L+  M + NV    V+   ++S   Q   L+  R+L +
Sbjct: 221 LVSWNSIINGYVRCGLADEAFDLYYKMGELNVMPDEVTMIGVVSASAQLENLALGRKLHQ 280

Query: 67  EMPERNVVSWTAMICGLADAGRVCE----ARKLFEEMPERNVVSWNSMVVGLIRNGELNE 122
            + E  +     +   L D    C+    A+ LFE M ++ VVSW +MV+G  + G L  
Sbjct: 281 SIEEMGLNLTVPLANALMDMYIKCKNIEAAKILFENMTKKTVVSWTTMVIGYAKFGLLES 340

Query: 123 ARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEER------------------ 164
           A ++FN MP K+V+ WNA+I G+V+     EA+ LF EM+                    
Sbjct: 341 AVRLFNEMPEKDVVLWNALIGGFVQAKRSKEALALFHEMQASSVAPDKITVVNCLSACSQ 400

Query: 165 ---------------------NVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAM 203
                                NV   T+++  Y + G +++   +F  MP +N ++WTA+
Sbjct: 401 LGALDVGIWMHHYVDKHNLTMNVALGTALVDMYAKCGNIKKAIQVFEEMPGRNSLTWTAI 460

Query: 204 IGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPV 263
           I G A +G    ++  F EM  I   G   +  +   +++     G +++ ++ F  +  
Sbjct: 461 ICGLALHGQPHAAISYFSEMISI---GLVPDEITFIGVLSACCHGGLVDQGRDYFYQMTS 517

Query: 264 RDEIS-----WTSMIDGYLSVGQVSNAYYLFHNMP-DRDAVAWTAMISG 306
           +  IS     ++ ++D     G +  A  L  +MP + DAV W A+  G
Sbjct: 518 KYGISPKLKHYSCLVDLLGRAGFLEEAEELIRSMPFEPDAVVWGALFFG 566



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 67/251 (26%), Positives = 111/251 (44%), Gaps = 49/251 (19%)

Query: 5   NHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRL 64
           N  K  VV  T+ +  Y+K G ++ A  LF  MP+++VV +NA++ GF+Q  R  EA  L
Sbjct: 316 NMTKKTVVSWTTMVIGYAKFGLLESAVRLFNEMPEKDVVLWNALIGGFVQAKRSKEALAL 375

Query: 65  FEEM------PER---------------------------------NVVSWTAMICGLAD 85
           F EM      P++                                 NV   TA++   A 
Sbjct: 376 FHEMQASSVAPDKITVVNCLSACSQLGALDVGIWMHHYVDKHNLTMNVALGTALVDMYAK 435

Query: 86  AGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGY 145
            G + +A ++FEEMP RN ++W +++ GL  +G+ + A   F+ M    ++       G 
Sbjct: 436 CGNIKKAIQVFEEMPGRNSLTWTAIICGLALHGQPHAAISYFSEMISIGLVPDEITFIGV 495

Query: 146 VECCMMG----EAIVLFEEMEERNVVT-----WTSMISGYCRAGEVEEGYCLFRRMP-RK 195
           +  C  G    +    F +M  +  ++     ++ ++    RAG +EE   L R MP   
Sbjct: 496 LSACCHGGLVDQGRDYFYQMTSKYGISPKLKHYSCLVDLLGRAGFLEEAEELIRSMPFEP 555

Query: 196 NVVSWTAMIGG 206
           + V W A+  G
Sbjct: 556 DAVVWGALFFG 566



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 83/326 (25%), Positives = 141/326 (43%), Gaps = 59/326 (18%)

Query: 288 LFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEM-RAHGVPPLNATFSVLFGAAGA-- 344
           + +N  + +  +W   I G V++E  + A  L+  M R     P N T+ +LF       
Sbjct: 110 ILNNAANLNVFSWNMAIRGYVESENPINAVLLYRNMLRKGSAIPDNYTYPLLFKVCAGFS 169

Query: 345 ---TANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSW 401
              TAN  LG  I         +SDL + N +I +   CG +  A  +F     RDLVSW
Sbjct: 170 LSWTANEILGHVIQLGF-----DSDLFVHNAIIHVLVSCGELLAARKLFDESCVRDLVSW 224

Query: 402 NSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELF----- 456
           NS++ G+   GLA+E   ++  M E    P+ VT +G++SA +    ++ G +L      
Sbjct: 225 NSIINGYVRCGLADEAFDLYYKMGELNVMPDEVTMIGVVSASAQLENLALGRKLHQSIEE 284

Query: 457 ----------NAMFDVY---------KI------QPGPEHYVSMINLLGRAGKIKEAEEF 491
                     NA+ D+Y         KI      +     + +M+    + G ++ A   
Sbjct: 285 MGLNLTVPLANALMDMYIKCKNIEAAKILFENMTKKTVVSWTTMVIGYAKFGLLESAVRL 344

Query: 492 VLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLN-APAHVVLCNIYAASG 550
              +P E D  +W AL+G  GF +  A+ ++ A     E+   + AP  + + N  +A  
Sbjct: 345 FNEMP-EKDVVLWNALIG--GFVQ--AKRSKEALALFHEMQASSVAPDKITVVNCLSACS 399

Query: 551 R------------HVEEHKLRMDMGL 564
           +            +V++H L M++ L
Sbjct: 400 QLGALDVGIWMHHYVDKHNLTMNVAL 425


>gi|345505208|gb|AEN99828.1| chlororespiratory reduction 4 [Arabis hirsuta]
          Length = 615

 Score =  290 bits (741), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 160/482 (33%), Positives = 259/482 (53%), Gaps = 46/482 (9%)

Query: 111 VVGL-IRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEM--EERNVV 167
           ++GL ++ G L  AR+VF+ M  ++ +S+N+MI GYV+C ++  A  LF+ M  E++N++
Sbjct: 164 LIGLYLKCGCLGFARQVFDRMSQRDSVSYNSMIDGYVKCGLIESARELFDLMPSEKKNLI 223

Query: 168 TWTSMISGYC-RAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGI 226
           +W SMI+GY  RA  V+    LF  MP K+++SW                          
Sbjct: 224 SWNSMINGYAQRADGVDIASNLFDEMPEKDLISW-------------------------- 257

Query: 227 CDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAY 286
                       NS+I+GY++ GR+E+A++LFD +P RD ++W +M+DGY  +G V  A 
Sbjct: 258 ------------NSLIDGYVKHGRIEDAKDLFDKMPRRDVVTWATMVDGYAKLGFVHQAK 305

Query: 287 YLFHNMPDRDAVAWTAMISGLVQNELFVEATYLF--MEMRAHGVPPLNATFSVLFGAAGA 344
            LF  MP RD VA+ +M++G VQN   +EA  +F  ME  +H + P   T  ++  A   
Sbjct: 306 SLFDQMPQRDVVAYNSMMAGYVQNRYHMEAIDIFNDMEKESH-LSPDETTLVIVLSAIAQ 364

Query: 345 TANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSM 404
              +     +H   ++ +      L   LI MY+KCG I  A  +F  + ++ +  WN+M
Sbjct: 365 LGRLSKAMDMHLYTVEKKFLLGGKLGVALIDMYSKCGSIQQAMGVFERIENKSIDHWNAM 424

Query: 405 VMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYK 464
           + G + HGL      +   +      P+ +TF+G+L+ACSH+GLV  G   F  M   +K
Sbjct: 425 IGGLAIHGLGESAFDMLLQIERRSIKPDDITFVGVLNACSHSGLVKEGLLCFELMKRKHK 484

Query: 465 IQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHA 524
           I+P  +HY  M+++L R+G+I+ A+  +  +P EP+  IW   L AC       E  E  
Sbjct: 485 IEPRLQHYGCMVDILSRSGRIELAKNLIEEMPIEPNDVIWRTFLTACSH-HKEFETGELV 543

Query: 525 AKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQM 584
           AK L+     N  ++V+L N+YA+ G   E  ++R  M  + ++K+PGCSW+  +G +  
Sbjct: 544 AKHLILQAGYNPSSYVLLSNMYASLGMWKEVRRVRTMMKERKIQKIPGCSWIELDGSVHE 603

Query: 585 FL 586
           F 
Sbjct: 604 FF 605



 Score =  182 bits (462), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 121/437 (27%), Positives = 234/437 (53%), Gaps = 20/437 (4%)

Query: 22  SKRGFIDEAKALFQLMPQRNVVS----YNAMLSGFLQNGRLSEARRLFEEMPERNVVSWT 77
           S+ GF+ E       + +  + S     N ++  +L+ G L  AR++F+ M +R+ VS+ 
Sbjct: 134 SRLGFVKEGMQXHGFLRKTGIWSDLFLQNCLIGLYLKCGCLGFARQVFDRMSQRDSVSYN 193

Query: 78  AMICGLADAGRVCEARKLFEEMP--ERNVVSWNSMVVGLIRNGE-LNEARKVFNSMPIKN 134
           +MI G    G +  AR+LF+ MP  ++N++SWNSM+ G  +  + ++ A  +F+ MP K+
Sbjct: 194 SMIDGYVKCGLIESARELFDLMPSEKKNLISWNSMINGYAQRADGVDIASNLFDEMPEKD 253

Query: 135 VISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPR 194
           +ISWN++I GYV+   + +A  LF++M  R+VVTW +M+ GY + G V +   LF +MP+
Sbjct: 254 LISWNSLIDGYVKHGRIEDAKDLFDKMPRRDVVTWATMVDGYAKLGFVHQAKSLFDQMPQ 313

Query: 195 KNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEA 254
           ++VV++ +M+ G+  N +H E++ +F +M+   ++  + +  +   +++   + GRL +A
Sbjct: 314 RDVVAYNSMMAGYVQNRYHMEAIDIFNDMEK--ESHLSPDETTLVIVLSAIAQLGRLSKA 371

Query: 255 QNL-FDTVPVRDEIS---WTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQN 310
            ++   TV  +  +      ++ID Y   G +  A  +F  + ++    W AMI GL  +
Sbjct: 372 MDMHLYTVEKKFLLGGKLGVALIDMYSKCGSIQQAMGVFERIENKSIDHWNAMIGGLAIH 431

Query: 311 ELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCV-LMKTESESDLIL 369
            L   A  + +++    + P + TF  +  A   +  +  G  + C  LMK + + +  L
Sbjct: 432 GLGESAFDMLLQIERRSIKPDDITFVGVLNACSHSGLVKEG--LLCFELMKRKHKIEPRL 489

Query: 370 EN--CLISMYAKCGVIDNAYNIFSNM-VSRDLVSWNSMVMGFSHHG-LANETLKVFESML 425
           ++  C++ + ++ G I+ A N+   M +  + V W + +   SHH       L     +L
Sbjct: 490 QHYGCMVDILSRSGRIELAKNLIEEMPIEPNDVIWRTFLTACSHHKEFETGELVAKHLIL 549

Query: 426 ESGTHPNSVTFLGILSA 442
           ++G +P+S   L  + A
Sbjct: 550 QAGYNPSSYVLLSNMYA 566



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 83/312 (26%), Positives = 164/312 (52%), Gaps = 48/312 (15%)

Query: 8   KSLVVHLTSSITKYSKRGF-IDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFE 66
           K  ++   S I  Y++R   +D A  LF  MP+++++S+N+++ G++++GR+ +A+ LF+
Sbjct: 219 KKNLISWNSMINGYAQRADGVDIASNLFDEMPEKDLISWNSLIDGYVKHGRIEDAKDLFD 278

Query: 67  EMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKV 126
           +MP R+VV+W  M+ G A  G V +A+ LF++MP+R+VV++NSM+ G ++N    EA  +
Sbjct: 279 KMPRRDVVTWATMVDGYAKLGFVHQAKSLFDQMPQRDVVAYNSMMAGYVQNRYHMEAIDI 338

Query: 127 FNSMPIKNVISWN----------------------------------------AMIAGYV 146
           FN M  ++ +S +                                        A+I  Y 
Sbjct: 339 FNDMEKESHLSPDETTLVIVLSAIAQLGRLSKAMDMHLYTVEKKFLLGGKLGVALIDMYS 398

Query: 147 ECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNV----VSWTA 202
           +C  + +A+ +FE +E +++  W +MI G    G  E  + +  ++ R+++    +++  
Sbjct: 399 KCGSIQQAMGVFERIENKSIDHWNAMIGGLAIHGLGESAFDMLLQIERRSIKPDDITFVG 458

Query: 203 MIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVP 262
           ++   + +G  KE LL F  MK    +     +Q    M++   R GR+E A+NL + +P
Sbjct: 459 VLNACSHSGLVKEGLLCFELMKR--KHKIEPRLQHYGCMVDILSRSGRIELAKNLIEEMP 516

Query: 263 VR-DEISWTSMI 273
           +  +++ W + +
Sbjct: 517 IEPNDVIWRTFL 528



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 66/243 (27%), Positives = 112/243 (46%), Gaps = 22/243 (9%)

Query: 296 DAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIH 355
           D   W A+I          +A  LF  M  +GV     + S++  A      +  G Q H
Sbjct: 87  DPFLWNAVIKSHSHGVEPRKALLLFFLMLKNGVSVDKFSLSLVLKACSRLGFVKEGMQXH 146

Query: 356 CVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLAN 415
             L KT   SDL L+NCLI +Y KCG +  A  +F  M  RD VS+NSM+ G+   GL  
Sbjct: 147 GFLRKTGIWSDLFLQNCLIGLYLKCGCLGFARQVFDRMSQRDSVSYNSMIDGYVKCGLIE 206

Query: 416 ETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEH---- 471
              ++F+ M       N +++  +++  +     + G ++ + +FD       PE     
Sbjct: 207 SARELFDLM--PSEKKNLISWNSMINGYAQR---ADGVDIASNLFD-----EMPEKDLIS 256

Query: 472 YVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIA-EHAAKRLLE 530
           + S+I+   + G+I++A++   ++P   D   W  ++      +G A++   H AK L +
Sbjct: 257 WNSLIDGYVKHGRIEDAKDLFDKMP-RRDVVTWATMV------DGYAKLGFVHQAKSLFD 309

Query: 531 LDP 533
             P
Sbjct: 310 QMP 312


>gi|356519383|ref|XP_003528352.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31430-like [Glycine max]
          Length = 614

 Score =  290 bits (741), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 182/556 (32%), Positives = 290/556 (52%), Gaps = 27/556 (4%)

Query: 56  GRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNV----VSWNSMV 111
           G  + A R+F  + + ++  +  MI     +G    A  LF+++ E  V     ++  ++
Sbjct: 56  GDFNYANRIFNYIHDPSLFIYNLMIKAFVKSGSFRSAISLFQQLREHGVWPDNYTYPYVL 115

Query: 112 VGLIRNGELNEARKVFNSMPIKNVISW-----NAMIAGYVECCMMGEAIVLFEEMEERNV 166
            G+   GE+ E  KV ++  +K  + +     N+ +  Y E  ++     +FEEM +R+ 
Sbjct: 116 KGIGCIGEVREGEKV-HAFVVKTGLEFDPYVCNSFMDMYAELGLVEGFTQVFEEMPDRDA 174

Query: 167 VTWTSMISGYCRAGEVEEGYCLFRRM-------PRKNVVSWTAMIGGFAWNGFHKESLLL 219
           V+W  MISGY R    EE   ++RRM       P +  V  T        N      L L
Sbjct: 175 VSWNIMISGYVRCKRFEEAVDVYRRMWTESNEKPNEATVVSTLSACAVLRN------LEL 228

Query: 220 FIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSV 279
             E+     +  +      N++++ Y + G +  A+ +FD + V++   WTSM+ GY+  
Sbjct: 229 GKEIHDYIASELDLTTIMGNALLDMYCKCGHVSVAREIFDAMTVKNVNCWTSMVTGYVIC 288

Query: 280 GQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLF 339
           GQ+  A  LF   P RD V WTAMI+G VQ   F E   LF EM+  GV P       L 
Sbjct: 289 GQLDQARNLFERSPSRDIVLWTAMINGYVQFNRFEETIALFGEMQIRGVKPDKFIVVTLL 348

Query: 340 GAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLV 399
                +  ++ G+ IH  + +   + D ++   LI MYAKCG I+ ++ IF+ +  +D  
Sbjct: 349 TGCAQSGALEQGKWIHNYIDENRIKVDAVVGTALIEMYAKCGCIEKSFEIFNGLKEKDTT 408

Query: 400 SWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAM 459
           SW S++ G + +G  +E L++F++M   G  P+ +TF+ +LSACSHAGLV  G +LF++M
Sbjct: 409 SWTSIICGLAMNGKPSEALELFKAMQTCGLKPDDITFVAVLSACSHAGLVEEGRKLFHSM 468

Query: 460 FDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRI---WGALLGACGFCEG 516
             +Y I+P  EHY   I+LLGRAG ++EAEE V +LP + +  I   +GALL AC    G
Sbjct: 469 SSMYHIEPNLEHYGCFIDLLGRAGLLQEAEELVKKLPAQNNEIIVPLYGALLSACR-TYG 527

Query: 517 NAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWL 576
           N ++ E  A  L ++   ++  H +L +IYA++ R  +  K+R  M   G++KVPG S +
Sbjct: 528 NIDMGERLATALAKVKSSDSSLHTLLASIYASADRWEDVRKVRNKMKDLGIKKVPGYSAI 587

Query: 577 MRNGGIQMFLSGDKIP 592
             +G  Q  LS    P
Sbjct: 588 EVDGKWQQRLSEGPFP 603



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 98/365 (26%), Positives = 175/365 (47%), Gaps = 16/365 (4%)

Query: 46  NAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEM------ 99
           N+ +  + + G +    ++FEEMP+R+ VSW  MI G     R  EA  ++  M      
Sbjct: 147 NSFMDMYAELGLVEGFTQVFEEMPDRDAVSWNIMISGYVRCKRFEEAVDVYRRMWTESNE 206

Query: 100 -PERNVVSWNSMVVGLIRNGEL-NEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVL 157
            P    V        ++RN EL  E      S      I  NA++  Y +C  +  A  +
Sbjct: 207 KPNEATVVSTLSACAVLRNLELGKEIHDYIASELDLTTIMGNALLDMYCKCGHVSVAREI 266

Query: 158 FEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESL 217
           F+ M  +NV  WTSM++GY   G++++   LF R P +++V WTAMI G+      +E++
Sbjct: 267 FDAMTVKNVNCWTSMVTGYVICGQLDQARNLFERSPSRDIVLWTAMINGYVQFNRFEETI 326

Query: 218 LLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQ---NLFDTVPVR-DEISWTSMI 273
            LF EM+     G   +     +++ G  + G LE+ +   N  D   ++ D +  T++I
Sbjct: 327 ALFGEMQ---IRGVKPDKFIVVTLLTGCAQSGALEQGKWIHNYIDENRIKVDAVVGTALI 383

Query: 274 DGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNA 333
           + Y   G +  ++ +F+ + ++D  +WT++I GL  N    EA  LF  M+  G+ P + 
Sbjct: 384 EMYAKCGCIEKSFEIFNGLKEKDTTSWTSIICGLAMNGKPSEALELFKAMQTCGLKPDDI 443

Query: 334 TFSVLFGAAGATANIDLGRQI-HCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSN 392
           TF  +  A      ++ GR++ H +      E +L    C I +  + G++  A  +   
Sbjct: 444 TFVAVLSACSHAGLVEEGRKLFHSMSSMYHIEPNLEHYGCFIDLLGRAGLLQEAEELVKK 503

Query: 393 MVSRD 397
           + +++
Sbjct: 504 LPAQN 508



 Score = 96.3 bits (238), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 58/185 (31%), Positives = 89/185 (48%), Gaps = 5/185 (2%)

Query: 278 SVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSV 337
           S+G  + A  +F+ + D     +  MI   V++  F  A  LF ++R HGV P N T+  
Sbjct: 54  SLGDFNYANRIFNYIHDPSLFIYNLMIKAFVKSGSFRSAISLFQQLREHGVWPDNYTYPY 113

Query: 338 LFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRD 397
           +    G    +  G ++H  ++KT  E D  + N  + MYA+ G+++    +F  M  RD
Sbjct: 114 VLKGIGCIGEVREGEKVHAFVVKTGLEFDPYVCNSFMDMYAELGLVEGFTQVFEEMPDRD 173

Query: 398 LVSWNSMVMGFSHHGLANETLKVFESM-LESGTHPNSVTFLGILSACSHAGLVSRGWELF 456
            VSWN M+ G+       E + V+  M  ES   PN  T +  LSAC+    V R  EL 
Sbjct: 174 AVSWNIMISGYVRCKRFEEAVDVYRRMWTESNEKPNEATVVSTLSACA----VLRNLELG 229

Query: 457 NAMFD 461
             + D
Sbjct: 230 KEIHD 234



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 63/260 (24%), Positives = 120/260 (46%), Gaps = 39/260 (15%)

Query: 15  TSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVV 74
           TS +T Y   G +D+A+ LF+  P R++V + AM++G++Q  R  E   LF EM  R V 
Sbjct: 279 TSMVTGYVICGQLDQARNLFERSPSRDIVLWTAMINGYVQFNRFEETIALFGEMQIRGV- 337

Query: 75  SWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKN 134
                                    P++ +V   +++ G  ++G L + + + N +  +N
Sbjct: 338 ------------------------KPDKFIVV--TLLTGCAQSGALEQGKWIHNYID-EN 370

Query: 135 VISWNAMIAG-----YVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLF 189
            I  +A++       Y +C  + ++  +F  ++E++  +WTS+I G    G+  E   LF
Sbjct: 371 RIKVDAVVGTALIEMYAKCGCIEKSFEIFNGLKEKDTTSWTSIICGLAMNGKPSEALELF 430

Query: 190 RRMP----RKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGY 245
           + M     + + +++ A++   +  G  +E   LF  M  +     N     C   I+  
Sbjct: 431 KAMQTCGLKPDDITFVAVLSACSHAGLVEEGRKLFHSMSSMYHIEPNLEHYGC--FIDLL 488

Query: 246 IRFGRLEEAQNLFDTVPVRD 265
            R G L+EA+ L   +P ++
Sbjct: 489 GRAGLLQEAEELVKKLPAQN 508



 Score = 58.9 bits (141), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 40/141 (28%), Positives = 72/141 (51%), Gaps = 9/141 (6%)

Query: 3   ERNHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEAR 62
           + N  K   V  T+ I  Y+K G I+++  +F  + +++  S+ +++ G   NG+ SEA 
Sbjct: 368 DENRIKVDAVVGTALIEMYAKCGCIEKSFEIFNGLKEKDTTSWTSIICGLAMNGKPSEAL 427

Query: 63  RLFEEMP----ERNVVSWTAMICGLADAGRVCEARKLFEEMP-----ERNVVSWNSMVVG 113
            LF+ M     + + +++ A++   + AG V E RKLF  M      E N+  +   +  
Sbjct: 428 ELFKAMQTCGLKPDDITFVAVLSACSHAGLVEEGRKLFHSMSSMYHIEPNLEHYGCFIDL 487

Query: 114 LIRNGELNEARKVFNSMPIKN 134
           L R G L EA ++   +P +N
Sbjct: 488 LGRAGLLQEAEELVKKLPAQN 508


>gi|356518183|ref|XP_003527761.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
            [Glycine max]
          Length = 1582

 Score =  289 bits (740), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 175/549 (31%), Positives = 288/549 (52%), Gaps = 30/549 (5%)

Query: 46   NAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVV 105
            N +++ +++ G +S AR +F +M E ++VSW  MI G A +G           + E +V 
Sbjct: 945  NCLINMYVKTGSVSRARTVFWQMNEVDLVSWNTMISGCALSG-----------LEECSV- 992

Query: 106  SWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERN 165
                M V L+R G L +   V + +   + +     +A  +  C M   +VL       +
Sbjct: 993  ---GMFVDLLRGGLLPDQFTVASVLRACSSLGGGCHLATQIHACAMKAGVVL-------D 1042

Query: 166  VVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKG 225
                T++I  Y ++G++EE   LF      ++ SW AM+ G+  +G   ++L L+I M+ 
Sbjct: 1043 SFVSTTLIDVYSKSGKMEEAEFLFVNQDGFDLASWNAMMHGYIVSGDFPKALRLYILMQE 1102

Query: 226  ICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVR----DEISWTSMIDGYLSVGQ 281
              +  N   + +      G +    L++ + +   V  R    D    + ++D YL  G+
Sbjct: 1103 SGERANQITLANAAKAAGGLVG---LKQGKQIQAVVVKRGFNLDLFVISGVLDMYLKCGE 1159

Query: 282  VSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGA 341
            + +A  +F+ +P  D VAWT MISG V+N     A + +  MR   V P   TF+ L  A
Sbjct: 1160 MESARRIFNEIPSPDDVAWTTMISGCVENGQEEHALFTYHHMRLSKVQPDEYTFATLVKA 1219

Query: 342  AGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSW 401
                  ++ GRQIH   +K     D  +   L+ MYAKCG I++A  +F    +  + SW
Sbjct: 1220 CSLLTALEQGRQIHANTVKLNCAFDPFVMTSLVDMYAKCGNIEDARGLFKRTNTSRIASW 1279

Query: 402  NSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFD 461
            N+M++G + HG A E L+ FE M   G  P+ VTF+G+LSACSH+GLVS  +E F +M  
Sbjct: 1280 NAMIVGLAQHGNAEEALQFFEEMKSRGVTPDRVTFIGVLSACSHSGLVSEAYENFYSMQK 1339

Query: 462  VYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIA 521
            +Y I+P  EHY  +++ L RAG+I+EAE+ +  +PFE    ++  LL AC   + + E  
Sbjct: 1340 IYGIEPEIEHYSCLVDALSRAGRIREAEKVISSMPFEASASMYRTLLNACR-VQVDRETG 1398

Query: 522  EHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGG 581
            +  A++LL L+P ++ A+V+L N+YAA+ +       R  M    V+K PG SW+     
Sbjct: 1399 KRVAEKLLALEPSDSAAYVLLSNVYAAANQWENVASARNMMRKANVKKDPGFSWVDLKNK 1458

Query: 582  IQMFLSGDK 590
            + +F++GD+
Sbjct: 1459 VHLFVAGDR 1467



 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 143/542 (26%), Positives = 244/542 (45%), Gaps = 59/542 (10%)

Query: 21   YSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMI 80
            Y+K G I EA+ LF  M  R+VV +N M+  ++  G   EA  LF E     +      +
Sbjct: 772  YAKFGRIREARVLFDGMGLRDVVLWNVMMKAYVDTGLEYEALLLFSEFNRTGLRPDDVTL 831

Query: 81   CGLADAGRVCEAR----------------KLF---EEMPERNVVSWNSMVVGLIRNGELN 121
            C LA   RV +++                KLF   ++    +V++WN  +   ++ GE  
Sbjct: 832  CTLA---RVVKSKQNVLEWQLKQLKAYGTKLFMYDDDDDGSDVIAWNKTLSWFLQRGETW 888

Query: 122  EARKVFNSMPIKNVISWNAM--------IAGYVECCMMGEAI--VLFEEMEERNVVTWTS 171
            EA   F  M I + ++ + +        +AG + C  +G+ I  ++     ++ V     
Sbjct: 889  EAVDCFVDM-INSRVACDGLTFVVMLSVVAG-LNCLELGKQIHGIVVRSGLDQVVSVGNC 946

Query: 172  MISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIE-MKG--ICD 228
            +I+ Y + G V     +F +M   ++VSW  MI G A +G  + S+ +F++ ++G  + D
Sbjct: 947  LINMYVKTGSVSRARTVFWQMNEVDLVSWNTMISGCALSGLEECSVGMFVDLLRGGLLPD 1006

Query: 229  NGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYL 288
                 +V    S + G         A  +   V V D    T++ID Y   G++  A +L
Sbjct: 1007 QFTVASVLRACSSLGGGCHLATQIHACAMKAGV-VLDSFVSTTLIDVYSKSGKMEEAEFL 1065

Query: 289  FHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANI 348
            F N    D  +W AM+ G + +  F +A  L++ M+  G      T +    AAG    +
Sbjct: 1066 FVNQDGFDLASWNAMMHGYIVSGDFPKALRLYILMQESGERANQITLANAAKAAGGLVGL 1125

Query: 349  DLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGF 408
              G+QI  V++K     DL + + ++ MY KCG +++A  IF+ + S D V+W +M+ G 
Sbjct: 1126 KQGKQIQAVVVKRGFNLDLFVISGVLDMYLKCGEMESARRIFNEIPSPDDVAWTTMISGC 1185

Query: 409  SHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWEL------FNAMFDV 462
              +G     L  +  M  S   P+  TF  ++ ACS    + +G ++       N  FD 
Sbjct: 1186 VENGQEEHALFTYHHMRLSKVQPDEYTFATLVKACSLLTALEQGRQIHANTVKLNCAFD- 1244

Query: 463  YKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRI--WGALLGACGFCE-GNAE 519
                  P    S++++  + G I++A     R       RI  W A++   G  + GNAE
Sbjct: 1245 ------PFVMTSLVDMYAKCGNIEDARGLFKRTNTS---RIASWNAMI--VGLAQHGNAE 1293

Query: 520  IA 521
             A
Sbjct: 1294 EA 1295



 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 132/558 (23%), Positives = 225/558 (40%), Gaps = 129/558 (23%)

Query: 46   NAMLSGFLQNGRLSEARRLFEEMPE--RNVVSWTAMICGLADAGRVCEARKLFEEMPERN 103
            N +++ + + G LS AR+LF+  P+  R++V+W A++   AD  R  +   LF  +  R+
Sbjct: 665  NNLITMYSKCGSLSSARKLFDTTPDTSRDLVTWNAILSAHADKAR--DGFHLF-RLLRRS 721

Query: 104  VVS-----------------------------------WNSMVVGLIRN-----GELNEA 123
             VS                                   W+  V G + N     G + EA
Sbjct: 722  FVSATRHTLAPVFKMCLLSASPSAAESLHGYAVKIGLQWDVFVAGALVNIYAKFGRIREA 781

Query: 124  RKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEM--------------------EE 163
            R +F+ M +++V+ WN M+  YV+  +  EA++LF E                      +
Sbjct: 782  RVLFDGMGLRDVVLWNVMMKAYVDTGLEYEALLLFSEFNRTGLRPDDVTLCTLARVVKSK 841

Query: 164  RNVVTWT-SMISGYCRAGEVEEGYCLF---RRMPRKNVVSWTAMIGGFAWNGFHKESLLL 219
            +NV+ W    +  Y        G  LF         +V++W   +  F   G   E++  
Sbjct: 842  QNVLEWQLKQLKAY--------GTKLFMYDDDDDGSDVIAWNKTLSWFLQRGETWEAVDC 893

Query: 220  FIEM---KGICDN-----------GNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRD 265
            F++M   +  CD            G NC        I+G +    L++  ++ +      
Sbjct: 894  FVDMINSRVACDGLTFVVMLSVVAGLNC--LELGKQIHGIVVRSGLDQVVSVGNC----- 946

Query: 266  EISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRA 325
                  +I+ Y+  G VS A  +F  M + D V+W  MISG   + L   +  +F+++  
Sbjct: 947  ------LINMYVKTGSVSRARTVFWQMNEVDLVSWNTMISGCALSGLEECSVGMFVDLLR 1000

Query: 326  HGVPPLNATF-SVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVID 384
             G+ P   T  SVL   +       L  QIH   MK     D  +   LI +Y+K G ++
Sbjct: 1001 GGLLPDQFTVASVLRACSSLGGGCHLATQIHACAMKAGVVLDSFVSTTLIDVYSKSGKME 1060

Query: 385  NAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACS 444
             A  +F N    DL SWN+M+ G+   G   + L+++  M ESG   N +T      A  
Sbjct: 1061 EAEFLFVNQDGFDLASWNAMMHGYIVSGDFPKALRLYILMQESGERANQITLANAAKAAG 1120

Query: 445  -----------HAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVL 493
                        A +V RG+ L     D++ I         ++++  + G+++ A     
Sbjct: 1121 GLVGLKQGKQIQAVVVKRGFNL-----DLFVIS-------GVLDMYLKCGEMESARRIFN 1168

Query: 494  RLPFEPDHRIWGALLGAC 511
             +P  PD   W  ++  C
Sbjct: 1169 EIP-SPDDVAWTTMISGC 1185



 Score = 91.7 bits (226), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 99/431 (22%), Positives = 176/431 (40%), Gaps = 60/431 (13%)

Query: 18   ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEE------MPER 71
            I  Y K G +  A+ +F  M + ++VS+N M+SG   +G    +  +F +      +P++
Sbjct: 948  INMYVKTGSVSRARTVFWQMNEVDLVSWNTMISGCALSGLEECSVGMFVDLLRGGLLPDQ 1007

Query: 72   NVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLI-----RNGELNEARKV 126
              V+     C     G  C           +  V  +S V   +     ++G++ EA  +
Sbjct: 1008 FTVASVLRACSSLGGG--CHLATQIHACAMKAGVVLDSFVSTTLIDVYSKSGKMEEAEFL 1065

Query: 127  FNSMPIKNVISWNAMIAGYVECCMMGEAIVLF----EEMEERNVVTWTS----------- 171
            F +    ++ SWNAM+ GY+      +A+ L+    E  E  N +T  +           
Sbjct: 1066 FVNQDGFDLASWNAMMHGYIVSGDFPKALRLYILMQESGERANQITLANAAKAAGGLVGL 1125

Query: 172  --------------------MISG----YCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGF 207
                                +ISG    Y + GE+E    +F  +P  + V+WT MI G 
Sbjct: 1126 KQGKQIQAVVVKRGFNLDLFVISGVLDMYLKCGEMESARRIFNEIPSPDDVAWTTMISGC 1185

Query: 208  AWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLF-DTVPVR-- 264
              NG  + +L  +  M+    +    +  +  +++        LE+ + +  +TV +   
Sbjct: 1186 VENGQEEHALFTYHHMRL---SKVQPDEYTFATLVKACSLLTALEQGRQIHANTVKLNCA 1242

Query: 265  -DEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEM 323
             D    TS++D Y   G + +A  LF         +W AMI GL Q+    EA   F EM
Sbjct: 1243 FDPFVMTSLVDMYAKCGNIEDARGLFKRTNTSRIASWNAMIVGLAQHGNAEEALQFFEEM 1302

Query: 324  RAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTES-ESDLILENCLISMYAKCGV 382
            ++ GV P   TF  +  A   +  +    +    + K    E ++   +CL+   ++ G 
Sbjct: 1303 KSRGVTPDRVTFIGVLSACSHSGLVSEAYENFYSMQKIYGIEPEIEHYSCLVDALSRAGR 1362

Query: 383  IDNAYNIFSNM 393
            I  A  + S+M
Sbjct: 1363 IREAEKVISSM 1373



 Score = 89.0 bits (219), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 79/331 (23%), Positives = 139/331 (41%), Gaps = 55/331 (16%)

Query: 15   TSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLF---EEMPER 71
            T+ I  YSK G ++EA+ LF      ++ S+NAM+ G++ +G   +A RL+   +E  ER
Sbjct: 1047 TTLIDVYSKSGKMEEAEFLFVNQDGFDLASWNAMMHGYIVSGDFPKALRLYILMQESGER 1106

Query: 72   -------NVVSWTAMICGLADA-----------------------------GRVCEARKL 95
                   N       + GL                                G +  AR++
Sbjct: 1107 ANQITLANAAKAAGGLVGLKQGKQIQAVVVKRGFNLDLFVISGVLDMYLKCGEMESARRI 1166

Query: 96   FEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAI 155
            F E+P  + V+W +M+ G + NG+   A   ++ M +  V       A  V+ C +  A+
Sbjct: 1167 FNEIPSPDDVAWTTMISGCVENGQEEHALFTYHHMRLSKVQPDEYTFATLVKACSLLTAL 1226

Query: 156  VLFEEMEERNV--------VTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGF 207
                ++    V           TS++  Y + G +E+   LF+R     + SW AMI G 
Sbjct: 1227 EQGRQIHANTVKLNCAFDPFVMTSLVDMYAKCGNIEDARGLFKRTNTSRIASWNAMIVGL 1286

Query: 208  AWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVP----V 263
            A +G  +E+L  F EMK     G   +  +   +++     G + EA   F ++     +
Sbjct: 1287 AQHGNAEEALQFFEEMKS---RGVTPDRVTFIGVLSACSHSGLVSEAYENFYSMQKIYGI 1343

Query: 264  RDEIS-WTSMIDGYLSVGQVSNAYYLFHNMP 293
              EI  ++ ++D     G++  A  +  +MP
Sbjct: 1344 EPEIEHYSCLVDALSRAGRIREAEKVISSMP 1374



 Score = 69.7 bits (169), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 43/129 (33%), Positives = 69/129 (53%), Gaps = 9/129 (6%)

Query: 14   LTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNV 73
            +TS +  Y+K G I++A+ LF+      + S+NAM+ G  Q+G   EA + FEEM  R V
Sbjct: 1248 MTSLVDMYAKCGNIEDARGLFKRTNTSRIASWNAMIVGLAQHGNAEEALQFFEEMKSRGV 1307

Query: 74   ----VSWTAMICGLADAGRVCEARKLFEEMP-----ERNVVSWNSMVVGLIRNGELNEAR 124
                V++  ++   + +G V EA + F  M      E  +  ++ +V  L R G + EA 
Sbjct: 1308 TPDRVTFIGVLSACSHSGLVSEAYENFYSMQKIYGIEPEIEHYSCLVDALSRAGRIREAE 1367

Query: 125  KVFNSMPIK 133
            KV +SMP +
Sbjct: 1368 KVISSMPFE 1376



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/170 (26%), Positives = 81/170 (47%), Gaps = 14/170 (8%)

Query: 325 AHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVID 384
           AH +  +   FS+L  A  A+ ++ LG++ H  ++ +    D  L N LI+MY+KCG + 
Sbjct: 620 AHLIHSIPQWFSILRHAIAAS-DLPLGKRAHARILTSGHHPDRFLTNNLITMYSKCGSLS 678

Query: 385 NAYNIFSNM--VSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSA 442
           +A  +F      SRDLV+WN+++   +H   A +   +F  +  S       T   +   
Sbjct: 679 SARKLFDTTPDTSRDLVTWNAILS--AHADKARDGFHLFRLLRRSFVSATRHTLAPVFKM 736

Query: 443 CSHAGLVSRGWELFNAMFDVYKIQPGPEHYV----SMINLLGRAGKIKEA 488
           C  +   S    L       Y ++ G +  V    +++N+  + G+I+EA
Sbjct: 737 CLLSASPSAAESLHG-----YAVKIGLQWDVFVAGALVNIYAKFGRIREA 781


>gi|297736926|emb|CBI26127.3| unnamed protein product [Vitis vinifera]
          Length = 603

 Score =  289 bits (740), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 170/566 (30%), Positives = 288/566 (50%), Gaps = 54/566 (9%)

Query: 77  TAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKN-- 134
           T+ I  LA  GR+  AR+LF+EMP ++ V+WN+M+    + G   +A  +F+ M I N  
Sbjct: 9   TSKIVALAKLGRITSARRLFDEMPHKDTVAWNAMLASYSQLGLHQQALCLFHHMRIANSR 68

Query: 135 -----------------------------VISW--------NAMIAGYVECCMMGEAIVL 157
                                        V+S         N++I  Y +C     A  +
Sbjct: 69  PDRFTFTATLSACAGLGELRRGMKIHAQVVVSGCQSSLPVGNSLIDMYGKCLSATSARRV 128

Query: 158 FEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESL 217
           FEEM   N V+W S++  Y  +G  +    +F  MP+K  ++W  MI G+   G  +  L
Sbjct: 129 FEEMSIMNEVSWCSLLFAYTSSGLFDVARVVFDGMPKKVEIAWNIMISGYGQCGDVELCL 188

Query: 218 LLFIEMKGICDNGNN----------CNVQ--SCNSMINGYIRFGRLEEAQNLFDTVPVRD 265
            LF +M+      +           C +Q  S   M++G+I     ++   +F+++ +  
Sbjct: 189 GLFKKMREDSLQPDQWTFSALVNALCELQEPSYGYMMHGFIIKSGWDDVMKVFESIGILT 248

Query: 266 EISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRA 325
           ++SW +MID ++ +G    A+ +F   P+++ V+WT+MI+G  +N    +A   F++M  
Sbjct: 249 QVSWNAMIDAHMKIGDTHEAFLVFQLAPEKNVVSWTSMITGYARNGHGEQALSFFVKMME 308

Query: 326 HGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDN 385
           + + P + TF  +  A  + A +  G+ IH  ++     + + + N L++MYAKCG I  
Sbjct: 309 NHIQPDDFTFGAVLHACSSLATLGHGKMIHGSIIHYGFHAYVDVGNGLVNMYAKCGDIQG 368

Query: 386 AYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSH 445
           +   F  ++ +DLVSWN+M+ G   HG A + L+++E M+ SG  P+ VTF+G+L  CSH
Sbjct: 369 SNTAFKEILGKDLVSWNAMLFGLGMHGHATQALELYEEMVASGMKPDKVTFIGLLMTCSH 428

Query: 446 AGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFV--LRLPFEPDHRI 503
           +GL+ +G  LF +M  VY +    EH V M++LLGR G + +A E V         +  +
Sbjct: 429 SGLIEKGQALFESMVSVYGLSQETEHVVCMVDLLGRGGYLAQARELVDEYSRTGRAETSL 488

Query: 504 WGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMG 563
             ALLGAC F      +  +  + L   +P    ++V+L N+Y  SG+  E   +R  M 
Sbjct: 489 PEALLGAC-FAHSEVRMGANLGEYLKVFEPQKEMSYVLLSNLYCVSGQWKEAEMVRKTMT 547

Query: 564 LKGVRKVPGCSWLMRNGGIQMFLSGD 589
             GV+K+PGCSW+     + +F++G+
Sbjct: 548 DHGVKKMPGCSWIEVRNKVTVFVAGN 573



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 129/523 (24%), Positives = 217/523 (41%), Gaps = 110/523 (21%)

Query: 9   SLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEM 68
           S +   TS I   +K G I  A+ LF  MP ++ V++NAML+ + Q G   +A  LF  M
Sbjct: 3   SHLFQTTSKIVALAKLGRITSARRLFDEMPHKDTVAWNAMLASYSQLGLHQQALCLFHHM 62

Query: 69  ------PERNVVSWTAMIC-GLADAGR--------------------------------V 89
                 P+R   + T   C GL +  R                                 
Sbjct: 63  RIANSRPDRFTFTATLSACAGLGELRRGMKIHAQVVVSGCQSSLPVGNSLIDMYGKCLSA 122

Query: 90  CEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECC 149
             AR++FEEM   N VSW S++     +G  + AR VF+ MP K  I+WN MI+GY +C 
Sbjct: 123 TSARRVFEEMSIMNEVSWCSLLFAYTSSGLFDVARVVFDGMPKKVEIAWNIMISGYGQCG 182

Query: 150 MMGEAIVLFEEMEERNV------------------------------------------- 166
            +   + LF++M E ++                                           
Sbjct: 183 DVELCLGLFKKMREDSLQPDQWTFSALVNALCELQEPSYGYMMHGFIIKSGWDDVMKVFE 242

Query: 167 -------VTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLL 219
                  V+W +MI  + + G+  E + +F+  P KNVVSWT+MI G+A NG  +++L  
Sbjct: 243 SIGILTQVSWNAMIDAHMKIGDTHEAFLVFQLAPEKNVVSWTSMITGYARNGHGEQALSF 302

Query: 220 FIEMK----GICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDG 275
           F++M        D      + +C+S+    +  G++     +        ++    +++ 
Sbjct: 303 FVKMMENHIQPDDFTFGAVLHACSSLAT--LGHGKMIHGSIIHYGFHAYVDVG-NGLVNM 359

Query: 276 YLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATF 335
           Y   G +  +   F  +  +D V+W AM+ GL  +    +A  L+ EM A G+ P   TF
Sbjct: 360 YAKCGDIQGSNTAFKEILGKDLVSWNAMLFGLGMHGHATQALELYEEMVASGMKPDKVTF 419

Query: 336 SVLFGAAGATANIDLGRQIHCVLMKT---ESESDLILENCLISMYAKCGVIDNAYNIFS- 391
             L      +  I+ G+ +   ++       E++ ++  C++ +  + G +  A  +   
Sbjct: 420 IGLLMTCSHSGLIEKGQALFESMVSVYGLSQETEHVV--CMVDLLGRGGYLAQARELVDE 477

Query: 392 -NMVSRDLVSWNSMVMG--FSHHGL---AN--ETLKVFESMLE 426
            +   R   S    ++G  F+H  +   AN  E LKVFE   E
Sbjct: 478 YSRTGRAETSLPEALLGACFAHSEVRMGANLGEYLKVFEPQKE 520



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/118 (31%), Positives = 58/118 (49%), Gaps = 1/118 (0%)

Query: 364 ESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFES 423
            S L      I   AK G I +A  +F  M  +D V+WN+M+  +S  GL  + L +F  
Sbjct: 2   HSHLFQTTSKIVALAKLGRITSARRLFDEMPHKDTVAWNAMLASYSQLGLHQQALCLFHH 61

Query: 424 MLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGR 481
           M  + + P+  TF   LSAC+  G + RG ++ +A   V   Q       S+I++ G+
Sbjct: 62  MRIANSRPDRFTFTATLSACAGLGELRRGMKI-HAQVVVSGCQSSLPVGNSLIDMYGK 118


>gi|225462250|ref|XP_002263297.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20230
           [Vitis vinifera]
 gi|297736133|emb|CBI24171.3| unnamed protein product [Vitis vinifera]
          Length = 687

 Score =  289 bits (740), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 179/566 (31%), Positives = 289/566 (51%), Gaps = 25/566 (4%)

Query: 52  FLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMV 111
           +  +G L  AR LF+++P+ ++ +WT +I  L   GR  EA + + +   +N V  + ++
Sbjct: 21  YSNSGDLQRARHLFDKIPQPDLPTWTILISALTKHGRSLEAIQYYNDFRHKNCVEPDKLL 80

Query: 112 VGLIRNGELNEARKVFNSMPI----------KNVISWNAMIAGYVECCMMGEAIVLFEEM 161
           +  +        R V N+  +           +V+  NA+I  Y +C     A ++FE M
Sbjct: 81  LLSVAKA-CASLRDVMNAKRVHEDAIRFGFCSDVLLGNALIDMYGKCRCSEGARLVFEGM 139

Query: 162 EERNVVTWTSMISGYCRAGEVEEGYCLFRRM----PRKNVVSWTAMIGGFAWNGFHKESL 217
             R+V++WTSM S Y   G + E    FR+M     R N V+ ++++          + L
Sbjct: 140 PFRDVISWTSMASCYVNCGLLREALGAFRKMGLNGERPNSVTVSSILPACT----DLKDL 195

Query: 218 LLFIEMKG-ICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGY 276
               E+ G +  NG   NV   ++++N Y     + +AQ +FD++  RD +SW  +I  Y
Sbjct: 196 KSGREVHGFVVRNGMGGNVFVSSALVNMYASCLSIRQAQLVFDSMSRRDTVSWNVLITAY 255

Query: 277 LSVGQVSNAYYLFHNMPDR----DAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLN 332
               +      +F  M       +  +W A+I G +QN    +A  +   M+  G  P  
Sbjct: 256 FLNKECEKGLSVFGRMMSEGVGLNYASWNAVIGGCMQNGRTEKALEVLSRMQNSGFKPNQ 315

Query: 333 ATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSN 392
            T + +  A     ++  G+QIH  + +     DL     L+ MYAKCG ++ +  +FS 
Sbjct: 316 ITITSVLPACTNLESLRGGKQIHGYIFRHWFFQDLTTTTALVFMYAKCGDLELSRRVFSM 375

Query: 393 MVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRG 452
           M  RD VSWN+M++  S HG   E L +F  M++SG  PNSVTF G+LS CSH+ LV  G
Sbjct: 376 MTKRDTVSWNTMIIATSMHGNGEEALLLFREMVDSGVRPNSVTFTGVLSGCSHSRLVDEG 435

Query: 453 WELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACG 512
             +F++M   + ++P  +H+  M+++L RAG+++EA EF+ ++P EP    WGALLG C 
Sbjct: 436 LLIFDSMSRDHSVEPDADHHSCMVDVLSRAGRLEEAYEFIKKMPIEPTAGAWGALLGGCR 495

Query: 513 FCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPG 572
             + N E+   AA RL E++  N   +V+L NI  ++    E  + R  M  +GV K PG
Sbjct: 496 VYK-NVELGRIAANRLFEIESDNPGNYVLLSNILVSAKLWSEASETRKLMRDRGVTKNPG 554

Query: 573 CSWLMRNGGIQMFLSGDKIPAQVAEI 598
           CSW+     +  F+ GDK   Q  EI
Sbjct: 555 CSWIQVRNRVHTFVVGDKSNDQSDEI 580



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/140 (29%), Positives = 72/140 (51%), Gaps = 10/140 (7%)

Query: 15  TSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPER--- 71
           T+ +  Y+K G ++ ++ +F +M +R+ VS+N M+     +G   EA  LF EM +    
Sbjct: 354 TALVFMYAKCGDLELSRRVFSMMTKRDTVSWNTMIIATSMHGNGEEALLLFREMVDSGVR 413

Query: 72  -NVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNS-----MVVGLIRNGELNEARK 125
            N V++T ++ G + +  V E   +F+ M   + V  ++     MV  L R G L EA +
Sbjct: 414 PNSVTFTGVLSGCSHSRLVDEGLLIFDSMSRDHSVEPDADHHSCMVDVLSRAGRLEEAYE 473

Query: 126 VFNSMPIKNVI-SWNAMIAG 144
               MPI+    +W A++ G
Sbjct: 474 FIKKMPIEPTAGAWGALLGG 493



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 40/173 (23%), Positives = 76/173 (43%), Gaps = 33/173 (19%)

Query: 40  RNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEM 99
           +++ +  A++  + + G L  +RR+F  M +R+ VSW  MI   +  G   EA  LF EM
Sbjct: 348 QDLTTTTALVFMYAKCGDLELSRRVFSMMTKRDTVSWNTMIIATSMHGNGEEALLLFREM 407

Query: 100 PERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFE 159
            +  V                             N +++  +++G     ++ E +++F+
Sbjct: 408 VDSGVRP---------------------------NSVTFTGVLSGCSHSRLVDEGLLIFD 440

Query: 160 EMEERNVVT-----WTSMISGYCRAGEVEEGYCLFRRMPRKNVV-SWTAMIGG 206
            M   + V       + M+    RAG +EE Y   ++MP +    +W A++GG
Sbjct: 441 SMSRDHSVEPDADHHSCMVDVLSRAGRLEEAYEFIKKMPIEPTAGAWGALLGG 493


>gi|356510957|ref|XP_003524199.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Glycine max]
          Length = 617

 Score =  289 bits (740), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 172/515 (33%), Positives = 282/515 (54%), Gaps = 20/515 (3%)

Query: 99  MPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAI--- 155
           M  R V+ W  + + L R   LN+A++V   + IKN+   + ++   +        +   
Sbjct: 1   MVVRRVLEWEVVRI-LERCSSLNQAKEVHAQIYIKNLQQSSYVLTKLLRLVTALPHVPLH 59

Query: 156 ----VLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNV--VSWTAMIGGFAW 209
               +LF ++   N   WT++I  Y   G + +    +  M ++ V  +S+T      A 
Sbjct: 60  SYPRLLFSQLHTPNPFAWTALIRAYALRGPLSQALSFYSSMRKRRVSPISFTFSALFSAC 119

Query: 210 NGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISW 269
                 +L   +  + +   G + ++   N++I+ Y++ G L  A+ +FD +P RD ISW
Sbjct: 120 AAVRHSALGAQLHAQTLLLGGFSSDLYVNNAVIDMYVKCGSLRCARMVFDEMPERDVISW 179

Query: 270 TSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVP 329
           T +I  Y  +G +  A  LF  +P +D V WTAM++G  QN + ++A  +F  +R  GV 
Sbjct: 180 TGLIVAYTRIGDMRAARDLFDGLPVKDMVTWTAMVTGYAQNAMPMDALEVFRRLRDEGVE 239

Query: 330 PLNATFSVLFGAAGATANIDLGRQIHCVLMKTESE-----SDLILENCLISMYAKCGVID 384
               T   L G   A A +   +  + +    ES       ++++ + LI MY+KCG ++
Sbjct: 240 IDEVT---LVGVISACAQLGASKYANWIRDIAESSGFGVGDNVLVGSALIDMYSKCGNVE 296

Query: 385 NAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACS 444
            AY++F  M  R++ S++SM++GF+ HG A   +K+F  MLE+G  PN VTF+G+L+ACS
Sbjct: 297 EAYDVFKGMRERNVFSYSSMIVGFAIHGRARAAIKLFYDMLETGVKPNHVTFVGVLTACS 356

Query: 445 HAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIW 504
           HAGLV +G +LF +M   Y + P  E Y  M +LL RAG +++A + V  +P E D  +W
Sbjct: 357 HAGLVDQGQQLFASMEKCYGVAPTAELYACMTDLLSRAGYLEKALQLVETMPMESDGAVW 416

Query: 505 GALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGL 564
           GALLGA     GN ++AE A+KRL EL+P N   +++L N YA++GR  +  K+R  +  
Sbjct: 417 GALLGA-SHVHGNPDVAEIASKRLFELEPDNIGNYLLLSNTYASAGRWDDVSKVRKLLRE 475

Query: 565 KGVRKVPGCSWL-MRNGGIQMFLSGDKIPAQVAEI 598
           K ++K PG SW+  +NG I  F++GD    ++ EI
Sbjct: 476 KNLKKNPGWSWVEAKNGMIHKFVAGDVSHPKINEI 510



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 99/372 (26%), Positives = 175/372 (47%), Gaps = 22/372 (5%)

Query: 59  SEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGL---- 114
           S  R LF ++   N  +WTA+I   A  G + +A   +  M +R V   +     L    
Sbjct: 60  SYPRLLFSQLHTPNPFAWTALIRAYALRGPLSQALSFYSSMRKRRVSPISFTFSALFSAC 119

Query: 115 --IRNGELN---EARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTW 169
             +R+  L     A+ +       ++   NA+I  YV+C  +  A ++F+EM ER+V++W
Sbjct: 120 AAVRHSALGAQLHAQTLLLGGFSSDLYVNNAVIDMYVKCGSLRCARMVFDEMPERDVISW 179

Query: 170 TSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDN 229
           T +I  Y R G++     LF  +P K++V+WTAM+ G+A N    ++L +F  ++   D 
Sbjct: 180 TGLIVAYTRIGDMRAARDLFDGLPVKDMVTWTAMVTGYAQNAMPMDALEVFRRLR---DE 236

Query: 230 GNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVP-----VRDEI-SWTSMIDGYLSVGQVS 283
           G   +  +   +I+   + G  + A  + D        V D +   +++ID Y   G V 
Sbjct: 237 GVEIDEVTLVGVISACAQLGASKYANWIRDIAESSGFGVGDNVLVGSALIDMYSKCGNVE 296

Query: 284 NAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAG 343
            AY +F  M +R+  ++++MI G   +     A  LF +M   GV P + TF  +  A  
Sbjct: 297 EAYDVFKGMRERNVFSYSSMIVGFAIHGRARAAIKLFYDMLETGVKPNHVTFVGVLTACS 356

Query: 344 ATANIDLGRQIHCVLMKTESESDLI-LENCLISMYAKCGVIDNAYNIFSNM-VSRDLVSW 401
               +D G+Q+   + K    +    L  C+  + ++ G ++ A  +   M +  D   W
Sbjct: 357 HAGLVDQGQQLFASMEKCYGVAPTAELYACMTDLLSRAGYLEKALQLVETMPMESDGAVW 416

Query: 402 NSMVMGFSH-HG 412
            ++ +G SH HG
Sbjct: 417 GAL-LGASHVHG 427



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 83/346 (23%), Positives = 151/346 (43%), Gaps = 59/346 (17%)

Query: 15  TSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQN---------GRLSEARRLF 65
           T+ I  Y+ RG + +A + +  M +R V   +   S              G    A+ L 
Sbjct: 78  TALIRAYALRGPLSQALSFYSSMRKRRVSPISFTFSALFSACAAVRHSALGAQLHAQTLL 137

Query: 66  EEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARK 125
                 ++    A+I      G +  AR +F+EMPER+V+SW  ++V   R G++  AR 
Sbjct: 138 LGGFSSDLYVNNAVIDMYVKCGSLRCARMVFDEMPERDVISWTGLIVAYTRIGDMRAARD 197

Query: 126 VFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEER--------------------- 164
           +F+ +P+K++++W AM+ GY +  M  +A+ +F  + +                      
Sbjct: 198 LFDGLPVKDMVTWTAMVTGYAQNAMPMDALEVFRRLRDEGVEIDEVTLVGVISACAQLGA 257

Query: 165 --------------------NVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMI 204
                               NV+  +++I  Y + G VEE Y +F+ M  +NV S+++MI
Sbjct: 258 SKYANWIRDIAESSGFGVGDNVLVGSALIDMYSKCGNVEEAYDVFKGMRERNVFSYSSMI 317

Query: 205 GGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVR 264
            GFA +G  + ++ LF +M    + G   N  +   ++      G +++ Q LF ++   
Sbjct: 318 VGFAIHGRARAAIKLFYDM---LETGVKPNHVTFVGVLTACSHAGLVDQGQQLFASMEKC 374

Query: 265 DEISWTS-----MIDGYLSVGQVSNAYYLFHNMP-DRDAVAWTAMI 304
             ++ T+     M D     G +  A  L   MP + D   W A++
Sbjct: 375 YGVAPTAELYACMTDLLSRAGYLEKALQLVETMPMESDGAVWGALL 420


>gi|345505232|gb|AEN99840.1| chlororespiratory reduction 4, partial [Olimarabidopsis pumila]
          Length = 579

 Score =  289 bits (740), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 157/453 (34%), Positives = 250/453 (55%), Gaps = 14/453 (3%)

Query: 139 NAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPR--KN 196
           N +I  Y++C  +G A  +F+ M +R+ V++ SMI GY + G +E    LF  MPR  KN
Sbjct: 126 NCLIGLYLKCGCLGFARQIFDRMPQRDSVSYNSMIDGYVKCGSIESASELFDLMPREMKN 185

Query: 197 VVSWTAMIGGFAWNGFHKE-SLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQ 255
           ++SW ++I G+A      + +  LF EM          ++ S NSMI+GY++ GR+E+A+
Sbjct: 186 LISWNSLISGYAQTSEGVDIASKLFAEMP-------EKDLISWNSMIDGYVKHGRIEDAK 238

Query: 256 NLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVE 315
           +LFD VP RD ++W +MIDGY  +G V  A  LF  MP RD VA+ +M++G VQN   +E
Sbjct: 239 DLFDMVPRRDVVTWATMIDGYAKLGFVHQAKTLFDQMPHRDVVAYNSMMAGYVQNRFHME 298

Query: 316 ATYLF--MEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCL 373
           A  +F  ME  +H + P   T  ++  A      +     +H  +++ +      L   L
Sbjct: 299 ALEIFSDMEKESH-LSPDETTLVIVLSAIAQLGRLSKAMDMHLYIVEKQFLLGGKLGVAL 357

Query: 374 ISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNS 433
           I MY+KCG I +A  +F  + ++ +  WN+M+ G + HGL      +   +      P+ 
Sbjct: 358 IDMYSKCGSIQHAMLVFEGIENKSIDHWNAMIGGLAIHGLGESAFDMLLQIERRSIKPDD 417

Query: 434 VTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVL 493
           +TF+G+L+ACSH+GLV  G   F  M   +KI+P  +HY  M+++L R+G I+ A+  + 
Sbjct: 418 ITFVGVLNACSHSGLVKEGLLCFELMRRKHKIEPRLQHYGCMVDILSRSGSIELAKNLIE 477

Query: 494 RLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHV 553
            +P EP+  IW   L AC       E  E  AK L+     N  ++V+L N+YA+ G   
Sbjct: 478 EMPIEPNDVIWRTFLTACSH-HKEFETGELVAKHLILQADYNPSSYVLLSNMYASFGMWK 536

Query: 554 EEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFL 586
           +  ++R  M  + + K+PGCSW+  +G +  F 
Sbjct: 537 DVRRVRTMMKERKIEKIPGCSWIELDGXVHEFF 569



 Score =  182 bits (463), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 116/409 (28%), Positives = 220/409 (53%), Gaps = 16/409 (3%)

Query: 46  NAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPE--RN 103
           N ++  +L+ G L  AR++F+ MP+R+ VS+ +MI G    G +  A +LF+ MP   +N
Sbjct: 126 NCLIGLYLKCGCLGFARQIFDRMPQRDSVSYNSMIDGYVKCGSIESASELFDLMPREMKN 185

Query: 104 VVSWNSMVVGLIRNGE-LNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEME 162
           ++SWNS++ G  +  E ++ A K+F  MP K++ISWN+MI GYV+   + +A  LF+ + 
Sbjct: 186 LISWNSLISGYAQTSEGVDIASKLFAEMPEKDLISWNSMIDGYVKHGRIEDAKDLFDMVP 245

Query: 163 ERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIE 222
            R+VVTW +MI GY + G V +   LF +MP ++VV++ +M+ G+  N FH E+L +F +
Sbjct: 246 RRDVVTWATMIDGYAKLGFVHQAKTLFDQMPHRDVVAYNSMMAGYVQNRFHMEALEIFSD 305

Query: 223 MKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEI----SWTSMIDGYLS 278
           M+   ++  + +  +   +++   + GRL +A ++   +  +  +       ++ID Y  
Sbjct: 306 MEK--ESHLSPDETTLVIVLSAIAQLGRLSKAMDMHLYIVEKQFLLGGKLGVALIDMYSK 363

Query: 279 VGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVL 338
            G + +A  +F  + ++    W AMI GL  + L   A  + +++    + P + TF  +
Sbjct: 364 CGSIQHAMLVFEGIENKSIDHWNAMIGGLAIHGLGESAFDMLLQIERRSIKPDDITFVGV 423

Query: 339 FGAAGATANIDLGRQIHCV-LMKTESESDLILEN--CLISMYAKCGVIDNAYNIFSNM-V 394
             A   +  +  G  + C  LM+ + + +  L++  C++ + ++ G I+ A N+   M +
Sbjct: 424 LNACSHSGLVKEG--LLCFELMRRKHKIEPRLQHYGCMVDILSRSGSIELAKNLIEEMPI 481

Query: 395 SRDLVSWNSMVMGFSHHG-LANETLKVFESMLESGTHPNSVTFLGILSA 442
             + V W + +   SHH       L     +L++  +P+S   L  + A
Sbjct: 482 EPNDVIWRTFLTACSHHKEFETGELVAKHLILQADYNPSSYVLLSNMYA 530



 Score =  129 bits (323), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 76/292 (26%), Positives = 153/292 (52%), Gaps = 47/292 (16%)

Query: 27  IDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADA 86
           +D A  LF  MP+++++S+N+M+ G++++GR+ +A+ LF+ +P R+VV+W  MI G A  
Sbjct: 203 VDIASKLFAEMPEKDLISWNSMIDGYVKHGRIEDAKDLFDMVPRRDVVTWATMIDGYAKL 262

Query: 87  GRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWN------- 139
           G V +A+ LF++MP R+VV++NSM+ G ++N    EA ++F+ M  ++ +S +       
Sbjct: 263 GFVHQAKTLFDQMPHRDVVAYNSMMAGYVQNRFHMEALEIFSDMEKESHLSPDETTLVIV 322

Query: 140 ---------------------------------AMIAGYVECCMMGEAIVLFEEMEERNV 166
                                            A+I  Y +C  +  A+++FE +E +++
Sbjct: 323 LSAIAQLGRLSKAMDMHLYIVEKQFLLGGKLGVALIDMYSKCGSIQHAMLVFEGIENKSI 382

Query: 167 VTWTSMISGYCRAGEVEEGYCLFRRMPRKNV----VSWTAMIGGFAWNGFHKESLLLFIE 222
             W +MI G    G  E  + +  ++ R+++    +++  ++   + +G  KE LL F  
Sbjct: 383 DHWNAMIGGLAIHGLGESAFDMLLQIERRSIKPDDITFVGVLNACSHSGLVKEGLLCFEL 442

Query: 223 MKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVR-DEISWTSMI 273
           M+    +     +Q    M++   R G +E A+NL + +P+  +++ W + +
Sbjct: 443 MRR--KHKIEPRLQHYGCMVDILSRSGSIELAKNLIEEMPIEPNDVIWRTFL 492



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 77/273 (28%), Positives = 122/273 (44%), Gaps = 23/273 (8%)

Query: 296 DAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIH 355
           D   W AMI           A  LF  M   GVP    + S++  A      +  G QIH
Sbjct: 51  DPYLWNAMIKSHSHGTDPRRALLLFCLMLEIGVPVDKFSLSLVMKACSRLGFVKGGLQIH 110

Query: 356 CVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLAN 415
             L KT   SDL L+NCLI +Y KCG +  A  IF  M  RD VS+NSM+ G+   G   
Sbjct: 111 GFLKKTGLWSDLFLQNCLIGLYLKCGCLGFARQIFDRMPQRDSVSYNSMIDGYVKCGSIE 170

Query: 416 ETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEH---- 471
              ++F+ M       N +++  ++S  +     S G ++ + +F        PE     
Sbjct: 171 SASELFDLMPRE--MKNLISWNSLISGYAQT---SEGVDIASKLF-----AEMPEKDLIS 220

Query: 472 YVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIA-EHAAKRLLE 530
           + SMI+   + G+I++A++    +P   D   W  ++      +G A++   H AK L +
Sbjct: 221 WNSMIDGYVKHGRIEDAKDLFDMVP-RRDVVTWATMI------DGYAKLGFVHQAKTLFD 273

Query: 531 LDP-LNAPAHVVLCNIYAASGRHVEEHKLRMDM 562
             P  +  A+  +   Y  +  H+E  ++  DM
Sbjct: 274 QMPHRDVVAYNSMMAGYVQNRFHMEALEIFSDM 306


>gi|115456537|ref|NP_001051869.1| Os03g0844000 [Oryza sativa Japonica Group]
 gi|41469627|gb|AAS07350.1| putative pentatricopeptide repeat domain contianing protein [Oryza
           sativa Japonica Group]
 gi|113550340|dbj|BAF13783.1| Os03g0844000 [Oryza sativa Japonica Group]
 gi|215686748|dbj|BAG89598.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 702

 Score =  289 bits (740), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 202/659 (30%), Positives = 313/659 (47%), Gaps = 91/659 (13%)

Query: 13  HLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERN 72
           H+ S   +    G    A A        +VV     L+  +++GRL++A  LF+ MP +N
Sbjct: 19  HVPSRRRRRVCDGLCSAAAADNGCAESPDVVLECKRLNRLVKSGRLADALDLFDRMPRKN 78

Query: 73  VVSWTAMICGLADAGRVCEARKLFEEMPERNVV----SWNSMVVGLIRNGELNEARKVFN 128
           VV+WT+++ G    GR   A  +F +M E  V     + N+ +V     G L    +V +
Sbjct: 79  VVAWTSVMSGYTRNGRPEAALAMFADMVESGVAPNDFACNAALVACADLGALRAGEQV-H 137

Query: 129 SMPIKNVISWNA-----MIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVE 183
           S+ ++   + +A     +I  Y  C  +  A  +F+ M+  +VV +TS+IS +CR GE E
Sbjct: 138 SLAVRAGFAGDAWIGSCLIEMYSRCGSLPAAKEVFDRMDSPDVVGYTSLISAFCRNGEFE 197

Query: 184 ------------------------------------EGYCLFRRMPR-KNVVSWTAMIGG 206
                                                GY + +   R ++V S TA+I  
Sbjct: 198 LAAEALIQMLKQGLKPNEHTMTTILTACPRVLGQQIHGYLIKKIGLRSQSVYSSTALIDF 257

Query: 207 FAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVR-- 264
           ++ NG  K +       K + D+ +  NV S  SM+  YIR GRLEEA  +F  +     
Sbjct: 258 YSRNGEFKLA-------KAVFDSLHCKNVVSWCSMMQLYIRDGRLEEALQVFGDMISEGV 310

Query: 265 --DEISWTSMIDGYLSVG------------------QVSNAYY--------------LFH 290
             +E + + ++    S+G                  +VSNA                + +
Sbjct: 311 DPNEFALSIVLGACGSIGLGRQLHCSAIKHDLITDIRVSNALLSMYGRTGLVEELEAMLN 370

Query: 291 NMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDL 350
            + + D V+WT  IS   QN    +A  L  +M + G  P    FS +  +    A++D 
Sbjct: 371 KIENPDLVSWTTAISANFQNGFGEKAIALLCQMHSEGFTPNGYAFSSVLSSCADVASLDQ 430

Query: 351 GRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSH 410
           G Q HC+ +K   +S++   N LI+MY+KCG + +A   F  M + D+ SWNS++ G + 
Sbjct: 431 GMQFHCLALKLGCDSEICTGNALINMYSKCGQMGSARLAFDVMHTHDVTSWNSLIHGHAQ 490

Query: 411 HGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPE 470
           HG AN+ L+VF  M  +G  P+  TFLG+L  C+H+G+V  G   F  M D Y   P P 
Sbjct: 491 HGDANKALEVFSKMRSNGIKPDDSTFLGVLMGCNHSGMVEEGELFFRLMIDQYSFTPAPS 550

Query: 471 HYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLE 530
           HY  MI++LGR G+  EA   +  +PFEPD  IW  LL +C     N +I + AA RL+E
Sbjct: 551 HYACMIDMLGRNGRFDEALRMINDMPFEPDALIWKTLLASCKL-HRNLDIGKLAADRLME 609

Query: 531 LDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGD 589
           L   ++ ++V++ NIYA  G   +  K+R  M   GV+K  GCSW+  N  +  F S D
Sbjct: 610 LSDRDSASYVLMSNIYAMHGEWEDARKVRRRMDETGVKKDAGCSWIEINNEVHTFASRD 668


>gi|297832866|ref|XP_002884315.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330155|gb|EFH60574.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 861

 Score =  289 bits (740), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 188/667 (28%), Positives = 303/667 (45%), Gaps = 120/667 (17%)

Query: 41  NVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMP 100
           +VV+ +A+L  + +  R  E+ R+F+ +PE+N VSW+A+I G      +  A K F+EM 
Sbjct: 172 DVVAASALLDMYAKGKRFVESLRVFQGIPEKNSVSWSAIIAGCVQNNLLSLALKFFKEMQ 231

Query: 101 ERNVVSWNSMVV------------------------------GLIRNGELN--------- 121
           + N     S+                                G++R   L+         
Sbjct: 232 KVNAGVSQSIYASVLRSCAALSELRLGGQLHAHALKSDFAADGIVRTATLDMYAKCDNMQ 291

Query: 122 EARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLF----------EEMEERNVVTWTS 171
           +A+ +F+     N  S+NAMI GY +     +A++LF          +E+    V    +
Sbjct: 292 DAQILFDKSENLNRQSYNAMITGYSQEEHGFKALLLFHRLMSSGLGFDEISLSGVFRACA 351

Query: 172 MISG-----------------------------YCRAGEVEEGYCLFRRMPRKNVVSWTA 202
           ++ G                             Y +   + E + +F  M R++ VSW A
Sbjct: 352 LVKGLSEGLQIYDLAIKSSLSLDVCVANAAIDMYGKCQALAEAFRVFDEMRRRDAVSWNA 411

Query: 203 MIGGFAWNGFHKESLLLFIEM-------------------------------KGICDNGN 231
           +I     NG   E+L LF+ M                                 I  +G 
Sbjct: 412 IIAAHEQNGKGYETLFLFVSMLRSRIEPDEFTFGSVLKACTGGSLGYGMEIHSSIVKSGM 471

Query: 232 NCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHN 291
             N     S+I+ Y + G +EEA+ +      R  +S           G +     + + 
Sbjct: 472 ASNSSVGCSLIDMYSKCGMIEEAEKIHSRFFQRTNVS-----------GTMEELEKMHNK 520

Query: 292 MPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLG 351
                 V+W ++ISG V  E   +A  LF  M   G+ P   T++ +       A+  LG
Sbjct: 521 RLQEMCVSWNSIISGYVMKEQSEDAQMLFTRMMEMGITPDKFTYATVLDTCANLASAGLG 580

Query: 352 RQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHH 411
           +QIH  ++K E +SD+ + + L+ MY+KCG + ++  +F   + RD V+WN+M+ G++HH
Sbjct: 581 KQIHAQVIKKELQSDVYISSTLVDMYSKCGDLHDSRLMFEKSLRRDFVTWNAMICGYAHH 640

Query: 412 GLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEH 471
           G   E +++FE M+     PN VTF+ IL AC+H GL+ +G E F  M   Y + P   H
Sbjct: 641 GKGEEAIQLFERMILENIKPNHVTFISILRACAHMGLIDKGLEYFYMMKRDYGLDPQLPH 700

Query: 472 YVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLEL 531
           Y +M+++LG++GK+K A E +  +PFE D  IW  LLG C     N E+AE A   LL L
Sbjct: 701 YSNMVDILGKSGKVKRALELIREMPFEADDVIWRTLLGVCTIHRNNVEVAEEATAALLRL 760

Query: 532 DPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKI 591
           DP ++ A+ +L N+YA +G   +   LR +M    ++K PGCSW+     + +FL GDK 
Sbjct: 761 DPQDSSAYTLLSNVYADAGMWEKVSDLRRNMRGFKLKKEPGCSWVELKDELHVFLVGDKA 820

Query: 592 PAQVAEI 598
             +  EI
Sbjct: 821 HPRWEEI 827



 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 131/462 (28%), Positives = 217/462 (46%), Gaps = 17/462 (3%)

Query: 46  NAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVV 105
           N +L  +  +     A  +F+ MP R+VVSW  MI G A +  + +A   F  MP R+VV
Sbjct: 45  NCLLQVYTNSRDFVSASMVFDRMPLRDVVSWNKMINGYAKSNNMVKASFFFNMMPVRDVV 104

Query: 106 SWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEME--- 162
           SWNSM+ G ++NGE  ++ +VF  M            A  ++ C   E   L  ++    
Sbjct: 105 SWNSMLSGYLQNGETLKSIEVFVDMGRAGTEFDGRTFAIILKVCSCLEDTSLGMQIHGVV 164

Query: 163 -----ERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESL 217
                + +VV  ++++  Y +     E   +F+ +P KN VSW+A+I G   N     +L
Sbjct: 165 VRVGCDTDVVAASALLDMYAKGKRFVESLRVFQGIPEKNSVSWSAIIAGCVQNNLLSLAL 224

Query: 218 LLFIEMK----GICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMI 273
             F EM+    G+  +     ++SC ++    +R G    A  L       D I  T+ +
Sbjct: 225 KFFKEMQKVNAGVSQSIYASVLRSCAAL--SELRLGGQLHAHALKSDFAA-DGIVRTATL 281

Query: 274 DGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNA 333
           D Y     + +A  LF    + +  ++ AMI+G  Q E   +A  LF  + + G+     
Sbjct: 282 DMYAKCDNMQDAQILFDKSENLNRQSYNAMITGYSQEEHGFKALLLFHRLMSSGLGFDEI 341

Query: 334 TFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNM 393
           + S +F A      +  G QI+ + +K+    D+ + N  I MY KC  +  A+ +F  M
Sbjct: 342 SLSGVFRACALVKGLSEGLQIYDLAIKSSLSLDVCVANAAIDMYGKCQALAEAFRVFDEM 401

Query: 394 VSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGW 453
             RD VSWN+++     +G   ETL +F SML S   P+  TF  +L AC+  G +  G 
Sbjct: 402 RRRDAVSWNAIIAAHEQNGKGYETLFLFVSMLRSRIEPDEFTFGSVLKACT-GGSLGYGM 460

Query: 454 ELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRL 495
           E+ +++     +        S+I++  + G I+EAE+   R 
Sbjct: 461 EIHSSIVKS-GMASNSSVGCSLIDMYSKCGMIEEAEKIHSRF 501



 Score =  162 bits (410), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 151/622 (24%), Positives = 269/622 (43%), Gaps = 98/622 (15%)

Query: 7   PKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFE 66
           P   VV     I  Y+K   + +A   F +MP R+VVS+N+MLSG+LQNG   ++  +F 
Sbjct: 68  PLRDVVSWNKMINGYAKSNNMVKASFFFNMMPVRDVVSWNSMLSGYLQNGETLKSIEVFV 127

Query: 67  EMP---------------------------------------ERNVVSWTAMICGLADAG 87
           +M                                        + +VV+ +A++   A   
Sbjct: 128 DMGRAGTEFDGRTFAIILKVCSCLEDTSLGMQIHGVVVRVGCDTDVVAASALLDMYAKGK 187

Query: 88  RVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVE 147
           R  E+ ++F+ +PE+N VSW++++ G ++N  L+ A K F  M   N     ++ A  + 
Sbjct: 188 RFVESLRVFQGIPEKNSVSWSAIIAGCVQNNLLSLALKFFKEMQKVNAGVSQSIYASVLR 247

Query: 148 CCMMGEAIVLFEEMEERNV--------VTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVS 199
            C     + L  ++    +        +  T+ +  Y +   +++   LF +    N  S
Sbjct: 248 SCAALSELRLGGQLHAHALKSDFAADGIVRTATLDMYAKCDNMQDAQILFDKSENLNRQS 307

Query: 200 WTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFD 259
           + AMI G++      ++LLLF     +  +G   +  S + +         L E   ++D
Sbjct: 308 YNAMITGYSQEEHGFKALLLF---HRLMSSGLGFDEISLSGVFRACALVKGLSEGLQIYD 364

Query: 260 TVPVRDEISW-----TSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFV 314
            + ++  +S       + ID Y     ++ A+ +F  M  RDAV+W A+I+   QN    
Sbjct: 365 -LAIKSSLSLDVCVANAAIDMYGKCQALAEAFRVFDEMRRRDAVSWNAIIAAHEQNGKGY 423

Query: 315 EATYLFMEMRAHGVPPLNATF-SVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCL 373
           E  +LF+ M    + P   TF SVL    G +  +  G +IH  ++K+   S+  +   L
Sbjct: 424 ETLFLFVSMLRSRIEPDEFTFGSVLKACTGGS--LGYGMEIHSSIVKSGMASNSSVGCSL 481

Query: 374 ISMYAKCGVIDNAYNIFSNMVSRD--------------------LVSWNSMVMGFSHHGL 413
           I MY+KCG+I+ A  I S    R                      VSWNS++ G+     
Sbjct: 482 IDMYSKCGMIEEAEKIHSRFFQRTNVSGTMEELEKMHNKRLQEMCVSWNSIISGYVMKEQ 541

Query: 414 ANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYV 473
           + +   +F  M+E G  P+  T+  +L  C++      G ++      V K +   + Y+
Sbjct: 542 SEDAQMLFTRMMEMGITPDKFTYATVLDTCANLASAGLGKQIHA---QVIKKELQSDVYI 598

Query: 474 S--MINLLGRAGKIKEAEEFVLRLPFEP----DHRIWGALLGACGFC-EGNAEIAEHAAK 526
           S  ++++  + G + ++     RL FE     D   W A++  CG+   G  E A    +
Sbjct: 599 SSTLVDMYSKCGDLHDS-----RLMFEKSLRRDFVTWNAMI--CGYAHHGKGEEAIQLFE 651

Query: 527 RLLELDPLNAPAHVVLCNIYAA 548
           R++ L+ +  P HV   +I  A
Sbjct: 652 RMI-LENIK-PNHVTFISILRA 671



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 81/366 (22%), Positives = 150/366 (40%), Gaps = 85/366 (23%)

Query: 16  SSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEM------P 69
           ++I  Y K   + EA  +F  M +R+ VS+NA+++   QNG+  E   LF  M      P
Sbjct: 380 AAIDMYGKCQALAEAFRVFDEMRRRDAVSWNAIIAAHEQNGKGYETLFLFVSMLRSRIEP 439

Query: 70  ER----------------------------NVVSWTAMICGLAD----AGRVCEARKLFE 97
           +                              + S +++ C L D     G + EA K+  
Sbjct: 440 DEFTFGSVLKACTGGSLGYGMEIHSSIVKSGMASNSSVGCSLIDMYSKCGMIEEAEKIHS 499

Query: 98  EMPERN--------------------VVSWNSMVVGLIRNGELNEARKVFNSMPIKNVIS 137
              +R                      VSWNS++ G +   +  +A+ +F  M    +  
Sbjct: 500 RFFQRTNVSGTMEELEKMHNKRLQEMCVSWNSIISGYVMKEQSEDAQMLFTRMMEMGITP 559

Query: 138 WNAMIAGYVECCM------MGEAI---VLFEEMEERNVVTWTSMISGYCRAGEVEEGYCL 188
                A  ++ C       +G+ I   V+ +E++  +V   ++++  Y + G++ +   +
Sbjct: 560 DKFTYATVLDTCANLASAGLGKQIHAQVIKKELQS-DVYISSTLVDMYSKCGDLHDSRLM 618

Query: 189 FRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNV------QSCNSM- 241
           F +  R++ V+W AMI G+A +G  +E++ LF  M  I +N    +V      ++C  M 
Sbjct: 619 FEKSLRRDFVTWNAMICGYAHHGKGEEAIQLFERM--ILENIKPNHVTFISILRACAHMG 676

Query: 242 --INGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMP-DRDAV 298
               G   F  ++    L   +P      +++M+D     G+V  A  L   MP + D V
Sbjct: 677 LIDKGLEYFYMMKRDYGLDPQLP-----HYSNMVDILGKSGKVKRALELIREMPFEADDV 731

Query: 299 AWTAMI 304
            W  ++
Sbjct: 732 IWRTLL 737



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 56/251 (22%), Positives = 121/251 (48%), Gaps = 35/251 (13%)

Query: 12  VHLTSSITK-YSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPE 70
           V+++S++   YSK G + +++ +F+   +R+ V++NAM+ G+  +G+  EA +LFE M  
Sbjct: 596 VYISSTLVDMYSKCGDLHDSRLMFEKSLRRDFVTWNAMICGYAHHGKGEEAIQLFERMIL 655

Query: 71  RNV----VSWTAMICGLADAGRVCEARKLFEEMP-----ERNVVSWNSMVVGLIRNGELN 121
            N+    V++ +++   A  G + +  + F  M      +  +  +++MV  L ++G++ 
Sbjct: 656 ENIKPNHVTFISILRACAHMGLIDKGLEYFYMMKRDYGLDPQLPHYSNMVDILGKSGKVK 715

Query: 122 EARKVFNSMPIK-NVISWNAMIA------GYVECCMMGEAIVLFEEMEERNVVTWTSMIS 174
            A ++   MP + + + W  ++         VE  +  EA      ++ ++   +T + +
Sbjct: 716 RALELIREMPFEADDVIWRTLLGVCTIHRNNVE--VAEEATAALLRLDPQDSSAYTLLSN 773

Query: 175 GYCRAGEVEEGYCLFR-----RMPRKNVVSWTA--------MIGGFA---WNGFHKESLL 218
            Y  AG  E+   L R     ++ ++   SW          ++G  A   W   ++E  L
Sbjct: 774 VYADAGMWEKVSDLRRNMRGFKLKKEPGCSWVELKDELHVFLVGDKAHPRWEEIYEELGL 833

Query: 219 LFIEMKGICDN 229
           ++ EMK   D+
Sbjct: 834 IYSEMKPFDDS 844



 Score = 48.1 bits (113), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 63/300 (21%), Positives = 117/300 (39%), Gaps = 71/300 (23%)

Query: 348 IDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMG 407
           ++LG+Q H  ++ +       + NCL+ +Y       +A  +F  M  RD+VSWN M+ G
Sbjct: 22  LELGKQAHAHMILSGFRPTTFVLNCLLQVYTNSRDFVSASMVFDRMPLRDVVSWNKMING 81

Query: 408 FS-------------------------------HHGLANETLKVFESMLESGTHPNSVTF 436
           ++                                +G   ++++VF  M  +GT  +  TF
Sbjct: 82  YAKSNNMVKASFFFNMMPVRDVVSWNSMLSGYLQNGETLKSIEVFVDMGRAGTEFDGRTF 141

Query: 437 LGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYV----SMINLLGRAGKIKEAEEFV 492
             IL  CS     S G ++   +     ++ G +  V    +++++  +  +  E+    
Sbjct: 142 AIILKVCSCLEDTSLGMQIHGVV-----VRVGCDTDVVAASALLDMYAKGKRFVESLRVF 196

Query: 493 LRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAAS--- 549
             +P E +   W A++  C   + N  +   A K   E+  +NA    V  +IYA+    
Sbjct: 197 QGIP-EKNSVSWSAIIAGC--VQNN--LLSLALKFFKEMQKVNAG---VSQSIYASVLRS 248

Query: 550 ---------GRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEILL 600
                    G  +  H L+ D    G+         +R   + M+   D +  Q A+IL 
Sbjct: 249 CAALSELRLGGQLHAHALKSDFAADGI---------VRTATLDMYAKCDNM--QDAQILF 297


>gi|449523792|ref|XP_004168907.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 821

 Score =  289 bits (740), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 186/636 (29%), Positives = 313/636 (49%), Gaps = 57/636 (8%)

Query: 15  TSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNV- 73
           T  ++ +SK G I+EA  +F+ +  +    Y+ ML G+ +N  L  A      M   +V 
Sbjct: 85  TKLVSLFSKYGSINEAARVFEPIDDKLDALYHTMLKGYAKNSSLETALAFLCRMRYDDVK 144

Query: 74  -----VSWTAMICGL-ADAGRVCEAR-KLFEEMPERNVVSWNSMVVGLIRNGELNEARKV 126
                 ++   +CG  AD  R  E   +L       NV +   +V    +  ++++A K+
Sbjct: 145 PVVYNFTYLLKVCGDNADLKRGKEIHGQLITNSFAANVFAMTGVVNMYAKCRQIDDAYKM 204

Query: 127 FNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERN--------------------- 165
           F+ MP ++++SWN +IAG+ +     +A+ L   M++                       
Sbjct: 205 FDRMPERDLVSWNTIIAGFSQNGFAKKALELVLRMQDEGQRPDSITLVTVLPAAADVGLL 264

Query: 166 ------------------VVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGF 207
                             V   T++   Y + G VE    +F  M +K VVSW +M+ G+
Sbjct: 265 MVGKSIHGYAIRAGFAKLVNISTALADMYSKCGSVETARLIFDGMDQKTVVSWNSMMDGY 324

Query: 208 AWNGFHKESLLLFIEM--KGICDNGNNC--NVQSCNSMINGYIRFGRLEEAQNLFDTVPV 263
             NG  ++++ +F +M  +GI   G      + +C  +  G +  G+        D + +
Sbjct: 325 VQNGEPEKAIAVFEKMLEEGIDPTGVTIMEALHACADL--GDLERGKF--VHKFVDQLNL 380

Query: 264 RDEIS-WTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFME 322
             +IS   S+I  Y    +V  A  +F+N+  R  V+W AMI G  QN    EA   F E
Sbjct: 381 GSDISVMNSLISMYSKCKRVDIASDIFNNLNGRTHVSWNAMILGYAQNGRVSEALNCFSE 440

Query: 323 MRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGV 382
           M++ G+ P + T   +  A    +     + IH +++++  + ++ +   L+ MY+KCG 
Sbjct: 441 MKSLGMKPDSFTMVSVIPALAELSVTRHAKWIHGLIIRSCLDKNIFVTTALVDMYSKCGA 500

Query: 383 IDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSA 442
           I  A  +F  +  R +++WN+M+ G+  HGL    L +F+ M +    PN +T+L ++SA
Sbjct: 501 IHMARKLFDMISDRHVITWNAMIDGYGTHGLGRAALDLFDKMKKGAVEPNDITYLSVISA 560

Query: 443 CSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHR 502
           CSH+GLV  G   F +M   Y ++P  +HY +M++LLGRAG+IKEA +F+  +P  P   
Sbjct: 561 CSHSGLVDEGLRHFKSMKQDYGLEPSMDHYGAMVDLLGRAGRIKEAWDFIENMPISPGIT 620

Query: 503 IWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDM 562
           ++GA+LGAC     N E+ E AAK+L EL+P     HV+L NIYA++ +  +  ++R  M
Sbjct: 621 VYGAMLGACKI-HKNIEVGEKAAKKLFELNPDEGGYHVLLANIYASTSKWSKVAEVRKTM 679

Query: 563 GLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
             KG++K PGCS +     +  F SG     Q   I
Sbjct: 680 EKKGLKKTPGCSVVELRNEVHSFYSGSTTHPQSKRI 715



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 115/457 (25%), Positives = 194/457 (42%), Gaps = 74/457 (16%)

Query: 11  VVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPE 70
           V  +T  +  Y+K   ID+A  +F  MP+R++VS+N +++GF QNG   +A  L   M +
Sbjct: 182 VFAMTGVVNMYAKCRQIDDAYKMFDRMPERDLVSWNTIIAGFSQNGFAKKALELVLRMQD 241

Query: 71  R----NVVSWTAMICGLADA-----------------------------------GRVCE 91
                + ++   ++   AD                                    G V  
Sbjct: 242 EGQRPDSITLVTVLPAAADVGLLMVGKSIHGYAIRAGFAKLVNISTALADMYSKCGSVET 301

Query: 92  ARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCM- 150
           AR +F+ M ++ VVSWNSM+ G ++NGE  +A  VF  M  + +      I   +  C  
Sbjct: 302 ARLIFDGMDQKTVVSWNSMMDGYVQNGEPEKAIAVFEKMLEEGIDPTGVTIMEALHACAD 361

Query: 151 -----MGEAIVLFEEMEE--RNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAM 203
                 G+ +  F +      ++    S+IS Y +   V+    +F  +  +  VSW AM
Sbjct: 362 LGDLERGKFVHKFVDQLNLGSDISVMNSLISMYSKCKRVDIASDIFNNLNGRTHVSWNAM 421

Query: 204 IGGFAWNGFHKESLLLFIEMKGICDNGNN------------CNVQSCNSMINGYIRFGRL 251
           I G+A NG   E+L  F EMK +    ++             +V      I+G I    L
Sbjct: 422 ILGYAQNGRVSEALNCFSEMKSLGMKPDSFTMVSVIPALAELSVTRHAKWIHGLIIRSCL 481

Query: 252 EEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNE 311
           +  +N+F T         T+++D Y   G +  A  LF  + DR  + W AMI G   + 
Sbjct: 482 D--KNIFVT---------TALVDMYSKCGAIHMARKLFDMISDRHVITWNAMIDGYGTHG 530

Query: 312 LFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTES--ESDLIL 369
           L   A  LF +M+   V P + T+  +  A   +  +D G + H   MK +   E  +  
Sbjct: 531 LGRAALDLFDKMKKGAVEPNDITYLSVISACSHSGLVDEGLR-HFKSMKQDYGLEPSMDH 589

Query: 370 ENCLISMYAKCGVIDNAYNIFSNM-VSRDLVSWNSMV 405
              ++ +  + G I  A++   NM +S  +  + +M+
Sbjct: 590 YGAMVDLLGRAGRIKEAWDFIENMPISPGITVYGAML 626


>gi|297833028|ref|XP_002884396.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330236|gb|EFH60655.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 882

 Score =  289 bits (740), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 185/647 (28%), Positives = 324/647 (50%), Gaps = 81/647 (12%)

Query: 31  KALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVC 90
           K + ++  + ++   NA++  + + G LS AR++F+EMP R++VSW ++I G +  G   
Sbjct: 130 KQILEMGFESDLYVGNALVDMYSRMGLLSRARQVFDEMPVRDLVSWNSLISGYSSHGYYE 189

Query: 91  EARKLFEEM------PERNVVS------WNSMVV------------------GLIRNGEL 120
           EA +++ E+      P+   VS       N +VV                   ++ NG L
Sbjct: 190 EALEIYHELRNSWIVPDSFTVSSVLPAFANLLVVKQGQGLHGFTLKSGVNSVSVVNNGLL 249

Query: 121 ---------NEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEER---NVVT 168
                     +AR+VF+ M +++ +++N MI GY++  M+ E++ +F E  ++   +++T
Sbjct: 250 AMYLKFSRPTDARRVFDEMVVRDSVTYNTMICGYLKLEMVEESVKMFLENLDQFKPDILT 309

Query: 169 WTS-----------------------------------MISGYCRAGEVEEGYCLFRRMP 193
            TS                                   +I  Y + G++     +F  M 
Sbjct: 310 VTSVLCACGHLRDLSLAKYIYNYMLRAGFVLESTVKNILIDVYAKCGDMITARDVFNSME 369

Query: 194 RKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMIN--GYIRFGRL 251
            K+ VSW ++I G+  +G   E++ LF  M  + +  ++       S+      ++FG+ 
Sbjct: 370 CKDTVSWNSIISGYIQSGDLMEAMKLFKMMMIMEEQADHITYLMLISLSTRLADLKFGKG 429

Query: 252 EEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNE 311
             +  +   + +   +S  ++ID Y   G+V ++  +F++M   D V W  +IS  V+  
Sbjct: 430 LHSNGIKSGIYIDLSVS-NALIDMYAKCGEVGDSLKIFNSMGTLDTVTWNTVISACVRFG 488

Query: 312 LFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILEN 371
            F     +  +MR + V P  ATF V      + A   LG++IHC L++   ES+L + N
Sbjct: 489 DFATGLQVTTQMRKNKVVPDMATFLVTLPMCASLAAKRLGKEIHCCLLRFGYESELQIGN 548

Query: 372 CLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHP 431
            LI MY+KCG +++++ +F  M  RD+V+W  M+  +  +G   + L+ F  M +SG  P
Sbjct: 549 ALIEMYSKCGCLESSFRVFERMSRRDVVTWTGMIYAYGMYGEGEKALESFVDMEKSGIVP 608

Query: 432 NSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEF 491
           +SV F+ ++ ACSH+GLV +G   F  M   YKI P  EHY  +++LL R+ KI +AEEF
Sbjct: 609 DSVVFIALIYACSHSGLVEKGLACFEKMKTHYKIDPMIEHYACVVDLLSRSQKISKAEEF 668

Query: 492 VLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGR 551
           +  +P EPD  IW ++L AC    G+ E AE  ++R++EL+P +    ++  N YAA  +
Sbjct: 669 IQAMPIEPDASIWASVLRACR-TSGDMETAERVSRRIIELNPDDPGYSILASNAYAALRK 727

Query: 552 HVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
             +   +R  +  K ++K PG SW+     + +F SGD    Q   I
Sbjct: 728 WDKVSLIRKSVRDKHIKKNPGYSWIEIGKKVHVFCSGDDSAPQSEAI 774



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 114/474 (24%), Positives = 212/474 (44%), Gaps = 94/474 (19%)

Query: 18  ITKYSK-RGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNV--- 73
           I KYS  R          ++ P +NV  +N+++  F +NG   +A   + ++ E  V   
Sbjct: 46  IDKYSHFRAPASSLSVFRRVSPAKNVYIWNSIIRAFSKNGWFPKALEFYGKLRESKVSPD 105

Query: 74  -VSWTAMI---CGLADAGRVCEARKLFEEMP-ERNVVSWNSMVVGLIRNGELNEARKVFN 128
             ++ ++I    GL DA       K   EM  E ++   N++V    R G L+ AR+VF+
Sbjct: 106 KYTFPSVIKACAGLFDAEMGDLVYKQILEMGFESDLYVGNALVDMYSRMGLLSRARQVFD 165

Query: 129 SMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVV----TWTSMISGYCRAGEVEE 184
            MP+++++SWN++I+GY       EA+ ++ E+    +V    T +S++  +     V++
Sbjct: 166 EMPVRDLVSWNSLISGYSSHGYYEEALEIYHELRNSWIVPDSFTVSSVLPAFANLLVVKQ 225

Query: 185 GYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMING 244
           G                         G H  +L   +    + +NG          ++  
Sbjct: 226 G------------------------QGLHGFTLKSGVNSVSVVNNG----------LLAM 251

Query: 245 YIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMI 304
           Y++F R  +A+ +FD + VRD +++ +MI GYL +                         
Sbjct: 252 YLKFSRPTDARRVFDEMVVRDSVTYNTMICGYLKL------------------------- 286

Query: 305 SGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESE 364
                 E+  E+  +F+E      P +    SVL  A G   ++ L + I+  +++    
Sbjct: 287 ------EMVEESVKMFLENLDQFKPDILTVTSVL-CACGHLRDLSLAKYIYNYMLRAGFV 339

Query: 365 SDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESM 424
            +  ++N LI +YAKCG +  A ++F++M  +D VSWNS++ G+   G   E +K+F+ M
Sbjct: 340 LESTVKNILIDVYAKCGDMITARDVFNSMECKDTVSWNSIISGYIQSGDLMEAMKLFKMM 399

Query: 425 LESGTHPNSVTFLGILSACSH-------AGLVSRGWE--------LFNAMFDVY 463
           +      + +T+L ++S  +         GL S G +        + NA+ D+Y
Sbjct: 400 MIMEEQADHITYLMLISLSTRLADLKFGKGLHSNGIKSGIYIDLSVSNALIDMY 453



 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 52/185 (28%), Positives = 96/185 (51%), Gaps = 1/185 (0%)

Query: 272 MIDGYLSVGQVSNAYYLFHNM-PDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPP 330
           +ID Y      +++  +F  + P ++   W ++I    +N  F +A   + ++R   V P
Sbjct: 45  LIDKYSHFRAPASSLSVFRRVSPAKNVYIWNSIIRAFSKNGWFPKALEFYGKLRESKVSP 104

Query: 331 LNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIF 390
              TF  +  A     + ++G  ++  +++   ESDL + N L+ MY++ G++  A  +F
Sbjct: 105 DKYTFPSVIKACAGLFDAEMGDLVYKQILEMGFESDLYVGNALVDMYSRMGLLSRARQVF 164

Query: 391 SNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVS 450
             M  RDLVSWNS++ G+S HG   E L+++  +  S   P+S T   +L A ++  +V 
Sbjct: 165 DEMPVRDLVSWNSLISGYSSHGYYEEALEIYHELRNSWIVPDSFTVSSVLPAFANLLVVK 224

Query: 451 RGWEL 455
           +G  L
Sbjct: 225 QGQGL 229


>gi|124360227|gb|ABN08240.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 687

 Score =  289 bits (740), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 171/552 (30%), Positives = 288/552 (52%), Gaps = 16/552 (2%)

Query: 53  LQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVV 112
           L  G  + AR+LF+ +P+ +  + + +I  L   G   EA K++  + ER +     + +
Sbjct: 23  LNVGDFNRARQLFDNIPQPDPTTCSTLISALTTHGLSNEAIKIYSSLQERGIKPDMPVFL 82

Query: 113 GLIR----NGELNEARKVFNSMP----IKNVISWNAMIAGYVECCMMGEAIVLFEEMEER 164
              +    +G+    ++V +       + +V   NA+I  Y +C  +  A  +F+++  R
Sbjct: 83  AAAKACAVSGDALRVKEVHDDATRCGVMSDVFVGNALIHAYGKCKCVEGARRVFDDLVVR 142

Query: 165 NVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMK 224
           +VV+WTS+ S Y + G   +G  +FR M    V      +          + L    E+ 
Sbjct: 143 DVVSWTSLSSCYVKCGFPRKGMDVFREMGWSGVKPNPMTVSSILPACAELKDLKSGKEIH 202

Query: 225 GIC-DNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVS 283
           G    +G   N+  C+++++ Y +   + EA+ +FD +P RD +SW  ++  Y    +  
Sbjct: 203 GFAVRHGMVVNLFVCSALVSLYAKCLSVREARMVFDLMPHRDVVSWNGVLTAYFKNKEYE 262

Query: 284 NAYYLFHNMPDRDAV-----AWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVL 338
             + LF  M  RD V      W A+I G ++N    EA  +F +M+  G  P   T S +
Sbjct: 263 KGFSLFLKM-SRDGVRADEATWNAVIGGCMENGRSEEAVEMFRKMQKMGFKPNEITISSI 321

Query: 339 FGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDL 398
             A   + N+ +G++IHC + +     DL     L+ MYAKCG ++ + N+F  M  +D+
Sbjct: 322 LPACSFSENLRMGKEIHCYVFRHWKVGDLTSTTALLYMYAKCGDLNLSRNVFDMMRRKDV 381

Query: 399 VSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNA 458
           V+WN+M++  + HG   E L +F+ ML S   PNSVTF G+LS CSH+ LV  G ++FN+
Sbjct: 382 VAWNTMIIANAMHGNGKEALFLFDKMLLSRVQPNSVTFTGVLSGCSHSRLVEEGVQIFNS 441

Query: 459 MFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNA 518
           M   + ++P   HY  ++++  RAG++ EA +F+  +P EP    WGALL AC   + N 
Sbjct: 442 MGRDHLVEPDANHYSCVVDIYSRAGRLNEAYKFIQGMPMEPTASAWGALLAACRVYK-NV 500

Query: 519 EIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMR 578
           E+A+ +AK+L E++P N   +V L NI   +    E  ++R+ M  +G+ K PGCSWL  
Sbjct: 501 ELAKISAKKLFEIEPNNPGNYVSLFNILVTAKMWSEASQVRILMKERGITKTPGCSWLQV 560

Query: 579 NGGIQMFLSGDK 590
              +  F+ GDK
Sbjct: 561 GNKVHTFVVGDK 572



 Score =  115 bits (289), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 109/419 (26%), Positives = 196/419 (46%), Gaps = 31/419 (7%)

Query: 46  NAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVV 105
           NA++  + +   +  ARR+F+++  R+VVSWT++       G   +   +F EM    V 
Sbjct: 117 NALIHAYGKCKCVEGARRVFDDLVVRDVVSWTSLSSCYVKCGFPRKGMDVFREMGWSGVK 176

Query: 106 SWNSMVVGLI----------RNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAI 155
             N M V  I          ++G+      V + M + N+   +A+++ Y +C  + EA 
Sbjct: 177 P-NPMTVSSILPACAELKDLKSGKEIHGFAVRHGMVV-NLFVCSALVSLYAKCLSVREAR 234

Query: 156 VLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNV----VSWTAMIGGFAWNG 211
           ++F+ M  R+VV+W  +++ Y +  E E+G+ LF +M R  V     +W A+IGG   NG
Sbjct: 235 MVFDLMPHRDVVSWNGVLTAYFKNKEYEKGFSLFLKMSRDGVRADEATWNAVIGGCMENG 294

Query: 212 FHKESLLLFIEMKGICDNGNNCNVQS----CNSMINGYIRFGRLEEAQNLFDTVPVRDEI 267
             +E++ +F +M+ +    N   + S    C+   N  +R G+ E    +F    V D  
Sbjct: 295 RSEEAVEMFRKMQKMGFKPNEITISSILPACSFSEN--LRMGK-EIHCYVFRHWKVGDLT 351

Query: 268 SWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHG 327
           S T+++  Y   G ++ +  +F  M  +D VAW  MI     +    EA +LF +M    
Sbjct: 352 STTALLYMYAKCGDLNLSRNVFDMMRRKDVVAWNTMIIANAMHGNGKEALFLFDKMLLSR 411

Query: 328 VPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTE-SESDLILENCLISMYAKCGVIDNA 386
           V P + TF+ +      +  ++ G QI   + +    E D    +C++ +Y++ G ++ A
Sbjct: 412 VQPNSVTFTGVLSGCSHSRLVEEGVQIFNSMGRDHLVEPDANHYSCVVDIYSRAGRLNEA 471

Query: 387 YNIFSNMVSRDLVS-WNSMVMG---FSHHGLAN-ETLKVFESMLESGTHPNSVTFLGIL 440
           Y     M      S W +++     + +  LA     K+FE  +E     N V+   IL
Sbjct: 472 YKFIQGMPMEPTASAWGALLAACRVYKNVELAKISAKKLFE--IEPNNPGNYVSLFNIL 528



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 81/332 (24%), Positives = 158/332 (47%), Gaps = 24/332 (7%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNV---- 73
           ++ Y+K   + EA+ +F LMP R+VVS+N +L+ + +N    +   LF +M    V    
Sbjct: 221 VSLYAKCLSVREARMVFDLMPHRDVVSWNGVLTAYFKNKEYEKGFSLFLKMSRDGVRADE 280

Query: 74  VSWTAMICGLADAGRVCEARKLFEEMPER----NVVSWNSMVVGLIRNGELNEARK---- 125
            +W A+I G  + GR  EA ++F +M +     N ++ +S++     +  L   ++    
Sbjct: 281 ATWNAVIGGCMENGRSEEAVEMFRKMQKMGFKPNEITISSILPACSFSENLRMGKEIHCY 340

Query: 126 VFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEG 185
           VF    + ++ S  A++  Y +C  +  +  +F+ M  ++VV W +MI      G  +E 
Sbjct: 341 VFRHWKVGDLTSTTALLYMYAKCGDLNLSRNVFDMMRRKDVVAWNTMIIANAMHGNGKEA 400

Query: 186 YCLFRRM----PRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSM 241
             LF +M     + N V++T ++ G + +   +E + +F  M        + N  SC  +
Sbjct: 401 LFLFDKMLLSRVQPNSVTFTGVLSGCSHSRLVEEGVQIFNSMGRDHLVEPDANHYSC--V 458

Query: 242 INGYIRFGRLEEAQNLFDTVPVRDEIS-WTSMIDGYLSVGQVS----NAYYLFHNMPDRD 296
           ++ Y R GRL EA      +P+    S W +++        V     +A  LF   P+  
Sbjct: 459 VDIYSRAGRLNEAYKFIQGMPMEPTASAWGALLAACRVYKNVELAKISAKKLFEIEPNNP 518

Query: 297 AVAWTAMISGLVQNELFVEATYLFMEMRAHGV 328
              + ++ + LV  +++ EA+ + + M+  G+
Sbjct: 519 G-NYVSLFNILVTAKMWSEASQVRILMKERGI 549



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 85/378 (22%), Positives = 155/378 (41%), Gaps = 93/378 (24%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEM------PER 71
           I  Y K   ++ A+ +F  +  R+VVS+ ++ S +++ G   +   +F EM      P  
Sbjct: 120 IHAYGKCKCVEGARRVFDDLVVRDVVSWTSLSSCYVKCGFPRKGMDVFREMGWSGVKPNP 179

Query: 72  NVVS---------------------------------WTAMICGLADAGRVCEARKLFEE 98
             VS                                  +A++   A    V EAR +F+ 
Sbjct: 180 MTVSSILPACAELKDLKSGKEIHGFAVRHGMVVNLFVCSALVSLYAKCLSVREARMVFDL 239

Query: 99  MPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNV----ISWNAMIAGYVECCMMGEA 154
           MP R+VVSWN ++    +N E  +   +F  M    V     +WNA+I G +E     EA
Sbjct: 240 MPHRDVVSWNGVLTAYFKNKEYEKGFSLFLKMSRDGVRADEATWNAVIGGCMENGRSEEA 299

Query: 155 IVLFEEMEER---------------------------------------NVVTWTSMISG 175
           + +F +M++                                        ++ + T+++  
Sbjct: 300 VEMFRKMQKMGFKPNEITISSILPACSFSENLRMGKEIHCYVFRHWKVGDLTSTTALLYM 359

Query: 176 YCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNV 235
           Y + G++     +F  M RK+VV+W  MI   A +G  KE+L LF +M     +    N 
Sbjct: 360 YAKCGDLNLSRNVFDMMRRKDVVAWNTMIIANAMHGNGKEALFLFDKM---LLSRVQPNS 416

Query: 236 QSCNSMINGYIRFGRLEEAQNLFDTVPVRDEI------SWTSMIDGYLSVGQVSNAYYLF 289
            +   +++G      +EE   +F+++  RD +       ++ ++D Y   G+++ AY   
Sbjct: 417 VTFTGVLSGCSHSRLVEEGVQIFNSMG-RDHLVEPDANHYSCVVDIYSRAGRLNEAYKFI 475

Query: 290 HNMP-DRDAVAWTAMISG 306
             MP +  A AW A+++ 
Sbjct: 476 QGMPMEPTASAWGALLAA 493



 Score = 50.1 bits (118), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 24/85 (28%), Positives = 44/85 (51%)

Query: 373 LISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPN 432
           LI +    G  + A  +F N+   D  + ++++   + HGL+NE +K++ S+ E G  P+
Sbjct: 18  LIRVALNVGDFNRARQLFDNIPQPDPTTCSTLISALTTHGLSNEAIKIYSSLQERGIKPD 77

Query: 433 SVTFLGILSACSHAGLVSRGWELFN 457
              FL    AC+ +G   R  E+ +
Sbjct: 78  MPVFLAAAKACAVSGDALRVKEVHD 102


>gi|302787216|ref|XP_002975378.1| hypothetical protein SELMODRAFT_31438 [Selaginella moellendorffii]
 gi|300156952|gb|EFJ23579.1| hypothetical protein SELMODRAFT_31438 [Selaginella moellendorffii]
          Length = 561

 Score =  289 bits (740), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 168/585 (28%), Positives = 279/585 (47%), Gaps = 104/585 (17%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAML-SGFLQNGRLSEARRLFEEMPERNVVSW 76
           I  YS+ G +DEAK +F  +P++N  SYN ML     +N  L++A  +F  MPER+V+SW
Sbjct: 24  IRVYSECGKLDEAKLVFDGIPRQNDYSYNFMLMQSSARNNDLAQATEIFGRMPERDVLSW 83

Query: 77  TAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVI 136
           T M+   A  G +  A   F EMPER++V W  ++ G +  G+ +EA+ VF+ MP ++V+
Sbjct: 84  TVMVLAFAQNGDLEVAWSSFLEMPERDIVPWTGILQGFVDTGQPDEAKSVFDRMPQQDVV 143

Query: 137 SWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKN 196
            W+AM+        + +A +LF+   + NVV+WT+M+ GY  +G + E   LFR+MP+ +
Sbjct: 144 CWSAMLQAQARNDRVDQAKLLFDRFPQLNVVSWTAMLGGYAHSGRIREAELLFRKMPQHD 203

Query: 197 VVS---------------------------------------WTAMIGGFAWNGFHKESL 217
            +S                                       WT ++  +A  G   E+ 
Sbjct: 204 AISRPERDMGDYITMLSALAETKRLKDARALLEKMPEQSPVAWTIVLASYAQAGHMYEAR 263

Query: 218 LLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNL-FDTVPVRDEISWTSMIDGY 276
            L++ M          NV +  +M+ GY + G + + + L F+T+  RD ++W S++  Y
Sbjct: 264 ELYVAMPA-------KNVVASTAMVQGYAQGGHIRDCEELFFETMAERDSMAWNSLLGAY 316

Query: 277 LSVGQVSNAYYLFHNMPDRDA----------------VAWTAMISGLVQNELFVEATYLF 320
              G  SNA  +F  +P  D+                ++W  M+ G  Q+++  EA  LF
Sbjct: 317 SQNGLASNAEAVFSRIPQYDSMEDASSVLERMSHCSLISWNTMLGGFAQSKMVAEARALF 376

Query: 321 MEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKC 380
             M      P+   FS                                  N +++ +A  
Sbjct: 377 QTM------PVQDIFSW---------------------------------NAMVAAHAHV 397

Query: 381 GVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGIL 440
           G + +A   F  M S++L SW  ++ G++  G  +  + +F+SM   G  P+ + F+ ++
Sbjct: 398 GHLADAMRTFEAMASKNLFSWTILIAGYALAGHQSSAISLFQSMQLEGERPDGIVFMCVI 457

Query: 441 SACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPD 500
            ACSH GLV    + F  M   Y+IQP   H+  M++L  RAG+ ++A E +  +PF PD
Sbjct: 458 HACSHLGLVEEALQNFYQMRADYQIQPDENHFYCMVDLFARAGQQQDARELIESMPFVPD 517

Query: 501 HRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNI 545
              W  LLG+C     + ++ +HAA +   + P  A  +V+L NI
Sbjct: 518 SLAWQTLLGSCKVSR-DIQLGKHAANQASVISPEKAATYVLLSNI 561



 Score =  191 bits (486), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 120/450 (26%), Positives = 218/450 (48%), Gaps = 51/450 (11%)

Query: 7   PKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFE 66
           P+  V+  T  +  +++ G ++ A + F  MP+R++V +  +L GF+  G+  EA+ +F+
Sbjct: 76  PERDVLSWTVMVLAFAQNGDLEVAWSSFLEMPERDIVPWTGILQGFVDTGQPDEAKSVFD 135

Query: 67  EMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKV 126
            MP+++VV W+AM+   A   RV +A+ LF+  P+ NVVSW +M+ G   +G + EA  +
Sbjct: 136 RMPQQDVVCWSAMLQAQARNDRVDQAKLLFDRFPQLNVVSWTAMLGGYAHSGRIREAELL 195

Query: 127 FNSMPIKNVIS--------WNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCR 178
           F  MP  + IS        +  M++   E   + +A  L E+M E++ V WT +++ Y +
Sbjct: 196 FRKMPQHDAISRPERDMGDYITMLSALAETKRLKDARALLEKMPEQSPVAWTIVLASYAQ 255

Query: 179 AGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIE---------------- 222
           AG + E   L+  MP KNVV+ TAM+ G+A  G  ++   LF E                
Sbjct: 256 AGHMYEARELYVAMPAKNVVASTAMVQGYAQGGHIRDCEELFFETMAERDSMAWNSLLGA 315

Query: 223 --MKGICDNG-----------------------NNCNVQSCNSMINGYIRFGRLEEAQNL 257
               G+  N                        ++C++ S N+M+ G+ +   + EA+ L
Sbjct: 316 YSQNGLASNAEAVFSRIPQYDSMEDASSVLERMSHCSLISWNTMLGGFAQSKMVAEARAL 375

Query: 258 FDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEAT 317
           F T+PV+D  SW +M+  +  VG +++A   F  M  ++  +WT +I+G         A 
Sbjct: 376 FQTMPVQDIFSWNAMVAAHAHVGHLADAMRTFEAMASKNLFSWTILIAGYALAGHQSSAI 435

Query: 318 YLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQ-IHCVLMKTESESDLILENCLISM 376
            LF  M+  G  P    F  +  A      ++   Q  + +    + + D     C++ +
Sbjct: 436 SLFQSMQLEGERPDGIVFMCVIHACSHLGLVEEALQNFYQMRADYQIQPDENHFYCMVDL 495

Query: 377 YAKCGVIDNAYNIFSNM-VSRDLVSWNSMV 405
           +A+ G   +A  +  +M    D ++W +++
Sbjct: 496 FARAGQQQDARELIESMPFVPDSLAWQTLL 525



 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 76/341 (22%), Positives = 133/341 (39%), Gaps = 54/341 (15%)

Query: 239 NSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMI-DGYLSVGQVSNAYYLFHNMPDRDA 297
           N +I  Y   G+L+EA+ +FD +P +++ S+  M+         ++ A  +F  MP+RD 
Sbjct: 21  NLLIRVYSECGKLDEAKLVFDGIPRQNDYSYNFMLMQSSARNNDLAQATEIFGRMPERDV 80

Query: 298 VAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCV 357
           ++WT M+    QN     A   F+EM    + P              T   D  + +   
Sbjct: 81  LSWTVMVLAFAQNGDLEVAWSSFLEMPERDIVPWTGILQGFVD----TGQPDEAKSV--- 133

Query: 358 LMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANET 417
                 + D++  + ++   A+   +D A  +F      ++VSW +M+ G++H G   E 
Sbjct: 134 -FDRMPQQDVVCWSAMLQAQARNDRVDQAKLLFDRFPQLNVVSWTAMLGGYAHSGRIREA 192

Query: 418 -----------------------------------LKVFESMLESGTHPNSVTFLGILSA 442
                                              LK   ++LE     + V +  +L++
Sbjct: 193 ELLFRKMPQHDAISRPERDMGDYITMLSALAETKRLKDARALLEKMPEQSPVAWTIVLAS 252

Query: 443 CSHAGLVSRGWELFNAMFDVYKIQPGPEHYVS--MINLLGRAGKIKEAEEFVLRLPFEPD 500
            + AG +    EL+ AM       P      S  M+    + G I++ EE       E D
Sbjct: 253 YAQAGHMYEARELYVAM-------PAKNVVASTAMVQGYAQGGHIRDCEELFFETMAERD 305

Query: 501 HRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVV 541
              W +LLGA     G A  AE    R+ + D +   + V+
Sbjct: 306 SMAWNSLLGAYS-QNGLASNAEAVFSRIPQYDSMEDASSVL 345



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 50/223 (22%), Positives = 85/223 (38%), Gaps = 51/223 (22%)

Query: 351 GRQIHCVLMKTESESDLILENCLISMYAKCGVIDNA--------------YN-------- 388
            +++H  ++++    D  L N LI +Y++CG +D A              YN        
Sbjct: 1   AKRVHNQMLESPYRHDTFLSNLLIRVYSECGKLDEAKLVFDGIPRQNDYSYNFMLMQSSA 60

Query: 389 ----------IFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLG 438
                     IF  M  RD++SW  MV+ F+ +G        F  M E    P    + G
Sbjct: 61  RNNDLAQATEIFGRMPERDVLSWTVMVLAFAQNGDLEVAWSSFLEMPERDIVP----WTG 116

Query: 439 ILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYV----SMINLLGRAGKIKEAEEFVLR 494
           IL      G       +F+ M         P+  V    +M+    R  ++ +A+    R
Sbjct: 117 ILQGFVDTGQPDEAKSVFDRM---------PQQDVVCWSAMLQAQARNDRVDQAKLLFDR 167

Query: 495 LPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAP 537
            P + +   W A+LG      G    AE   +++ + D ++ P
Sbjct: 168 FP-QLNVVSWTAMLGGYAHS-GRIREAELLFRKMPQHDAISRP 208


>gi|147805537|emb|CAN74095.1| hypothetical protein VITISV_023708 [Vitis vinifera]
          Length = 906

 Score =  289 bits (740), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 193/634 (30%), Positives = 314/634 (49%), Gaps = 86/634 (13%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMP----ERNV 73
           +  Y+K     ++K LF  +P+RNVVS+NA+ S ++Q     EA  LF EM     + N 
Sbjct: 199 VVMYAKCDEFLDSKRLFDEIPERNVVSWNALFSCYVQXDFCGEAVGLFYEMVLSGIKPNE 258

Query: 74  VSWTAMI---CGLADA--GRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFN 128
            S ++M+    GL D+  G++     L +   + +  S N++V    + G+L +A  VF 
Sbjct: 259 FSLSSMVNACTGLRDSSRGKIIHGY-LIKLGYDWDPFSANALVDMYAKVGDLADAISVFE 317

Query: 129 SMPIKNVISWNAMIAGYVECCMMGEAIVLFEEME------------ERNVVTWTSMISGY 176
            +   +++SWNA+IAG V      +A+ L  +M+            E ++     ++  Y
Sbjct: 318 KIKQPDIVSWNAVIAGCVLHEHHEQALELLGQMKRQLHSSLMKMDMESDLFVSVGLVDMY 377

Query: 177 CRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEM--KGI-------- 226
            +   +E+    F  +P K++++W A+I G++      E+L LF+EM  +GI        
Sbjct: 378 SKCDLLEDARMAFNLLPEKDLIAWNAIISGYSQYWEDMEALSLFVEMHKEGIGFNQTTLS 437

Query: 227 ----------------------CDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVR 264
                                   +G + ++   NS+I+ Y +   +E+A+ +F+   + 
Sbjct: 438 TILKSTAGLQVVHVCRQVHGLSVKSGFHSDIYVVNSLIDSYGKCSHVEDAERIFEECTIG 497

Query: 265 DEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMR 324
           D +S+TSMI  Y   GQ                                 EA  LF+EM+
Sbjct: 498 DLVSFTSMITAYAQYGQGE-------------------------------EALKLFLEMQ 526

Query: 325 AHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVID 384
              + P     S L  A    +  + G+Q+H  ++K     D+   N L++MYAKCG ID
Sbjct: 527 DMELKPDRFVCSSLLNACANLSAFEQGKQLHVHILKYGFVLDIFAGNSLVNMYAKCGSID 586

Query: 385 NAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACS 444
           +A   FS +  R +VSW++M+ G + HG   + L++F  ML+ G  PN +T + +L AC+
Sbjct: 587 DAGRAFSELTERGIVSWSAMIGGLAQHGHGRQALQLFNQMLKEGVSPNHITLVSVLGACN 646

Query: 445 HAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIW 504
           HAGLV+     F +M +++  +P  EHY  MI+LLGRAGKI EA E V ++PFE +  +W
Sbjct: 647 HAGLVTEAKLYFESMEELFGFKPMQEHYACMIDLLGRAGKINEAVELVNKMPFEANASVW 706

Query: 505 GALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGL 564
           GALLGA      + E+   AA+ L  L+P  +  HV+L NIYA++G+     ++R  M  
Sbjct: 707 GALLGAARI-HKDVELGRRAAEMLFILEPEKSGTHVLLANIYASAGKWENVAEVRRLMRD 765

Query: 565 KGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
             V+K PG SW+     +  FL GD+   +  EI
Sbjct: 766 SKVKKEPGMSWIEVKDKVYTFLVGDRSHYRSQEI 799



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 134/589 (22%), Positives = 253/589 (42%), Gaps = 100/589 (16%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWT 77
           I  YSK      A+ L     + ++VS++A++SG+ QNG    A   F EM    V    
Sbjct: 98  INLYSKCRXFGYARKLVDESSEPDLVSWSALISGYAQNGLGGGALMAFHEMHLLGVKCNE 157

Query: 78  AMICGLADAGRVCEARKLFEEMP--------ERNVVSWNSMVVGLIRNGELNEARKVFNS 129
                +  A  + +  ++ +++         E +V   N++VV   +  E  +++++F+ 
Sbjct: 158 FTFSSVLKACSIVKDLRIGKQVHGVVVVSGFEGDVFVANTLVVMYAKCDEFLDSKRLFDE 217

Query: 130 MPIKNVISWNAMIAGYVECCMMGEAIVLFEEME----ERNVVTWTSMISG---------- 175
           +P +NV+SWNA+ + YV+    GEA+ LF EM     + N  + +SM++           
Sbjct: 218 IPERNVVSWNALFSCYVQXDFCGEAVGLFYEMVLSGIKPNEFSLSSMVNACTGLRDSSRG 277

Query: 176 -------------------------YCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWN 210
                                    Y + G++ +   +F ++ + ++VSW A+I G   +
Sbjct: 278 KIIHGYLIKLGYDWDPFSANALVDMYAKVGDLADAISVFEKIKQPDIVSWNAVIAGCVLH 337

Query: 211 GFHKESLLLFIEMK-----GICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRD 265
             H+++L L  +MK      +       ++     +++ Y +   LE+A+  F+ +P +D
Sbjct: 338 EHHEQALELLGQMKRQLHSSLMKMDMESDLFVSVGLVDMYSKCDLLEDARMAFNLLPEKD 397

Query: 266 EISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRA 325
            I+W ++I GY                    +  W  M           EA  LF+EM  
Sbjct: 398 LIAWNAIISGY--------------------SQYWEDM-----------EALSLFVEMHK 426

Query: 326 HGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDN 385
            G+     T S +  +      + + RQ+H + +K+   SD+ + N LI  Y KC  +++
Sbjct: 427 EGIGFNQTTLSTILKSTAGLQVVHVCRQVHGLSVKSGFHSDIYVVNSLIDSYGKCSHVED 486

Query: 386 AYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSH 445
           A  IF      DLVS+ SM+  ++ +G   E LK+F  M +    P+      +L+AC++
Sbjct: 487 AERIFEECTIGDLVSFTSMITAYAQYGQGEEALKLFLEMQDMELKPDRFVCSSLLNACAN 546

Query: 446 AGLVSRGWEL------FNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEP 499
                +G +L      +  + D++          S++N+  + G I +A      L  E 
Sbjct: 547 LSAFEQGKQLHVHILKYGFVLDIFAGN-------SLVNMYAKCGSIDDAGRAFSELT-ER 598

Query: 500 DHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAA 548
               W A++G      G+   A     ++L+     +P H+ L ++  A
Sbjct: 599 GIVSWSAMIGGLA-QHGHGRQALQLFNQMLKEGV--SPNHITLVSVLGA 644



 Score =  101 bits (252), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 80/296 (27%), Positives = 128/296 (43%), Gaps = 41/296 (13%)

Query: 139 NAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVV 198
           N +I  Y +C   G A  L +E  E ++V+W+++ISGY + G                  
Sbjct: 95  NHLINLYSKCRXFGYARKLVDESSEPDLVSWSALISGYAQNG------------------ 136

Query: 199 SWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLF 258
                +GG A   FH+  LL           G  CN  + +S++        L   + + 
Sbjct: 137 -----LGGGALMAFHEMHLL-----------GVKCNEFTFSSVLKACSIVKDLRIGKQVH 180

Query: 259 DTVPVR----DEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFV 314
             V V     D     +++  Y    +  ++  LF  +P+R+ V+W A+ S  VQ +   
Sbjct: 181 GVVVVSGFEGDVFVANTLVVMYAKCDEFLDSKRLFDEIPERNVVSWNALFSCYVQXDFCG 240

Query: 315 EATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLI 374
           EA  LF EM   G+ P   + S +  A     +   G+ IH  L+K   + D    N L+
Sbjct: 241 EAVGLFYEMVLSGIKPNEFSLSSMVNACTGLRDSSRGKIIHGYLIKLGYDWDPFSANALV 300

Query: 375 SMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMG---FSHHGLANETLKVFESMLES 427
            MYAK G + +A ++F  +   D+VSWN+++ G     HH  A E L   +  L S
Sbjct: 301 DMYAKVGDLADAISVFEKIKQPDIVSWNAVIAGCVLHEHHEQALELLGQMKRQLHS 356



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 68/255 (26%), Positives = 120/255 (47%), Gaps = 10/255 (3%)

Query: 272 MIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPL 331
           +I+ Y        A  L     + D V+W+A+ISG  QN L   A   F EM   GV   
Sbjct: 97  LINLYSKCRXFGYARKLVDESSEPDLVSWSALISGYAQNGLGGGALMAFHEMHLLGVKCN 156

Query: 332 NATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFS 391
             TFS +  A     ++ +G+Q+H V++ +  E D+ + N L+ MYAKC    ++  +F 
Sbjct: 157 EFTFSSVLKACSIVKDLRIGKQVHGVVVVSGFEGDVFVANTLVVMYAKCDEFLDSKRLFD 216

Query: 392 NMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSR 451
            +  R++VSWN++   +       E + +F  M+ SG  PN  +   +++AC+     SR
Sbjct: 217 EIPERNVVSWNALFSCYVQXDFCGEAVGLFYEMVLSGIKPNEFSLSSMVNACTGLRDSSR 276

Query: 452 GWELFNAMFDVYKIQPG----PEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGAL 507
           G      +   Y I+ G    P    +++++  + G + +A     ++  +PD   W A+
Sbjct: 277 G-----KIIHGYLIKLGYDWDPFSANALVDMYAKVGDLADAISVFEKIK-QPDIVSWNAV 330

Query: 508 LGACGFCEGNAEIAE 522
           +  C   E + +  E
Sbjct: 331 IAGCVLHEHHEQALE 345



 Score = 75.5 bits (184), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 62/242 (25%), Positives = 105/242 (43%), Gaps = 49/242 (20%)

Query: 14  LTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEM----- 68
           + S I  Y K   +++A+ +F+     ++VS+ +M++ + Q G+  EA +LF EM     
Sbjct: 471 VNSLIDSYGKCSHVEDAERIFEECTIGDLVSFTSMITAYAQYGQGEEALKLFLEMQDMEL 530

Query: 69  -PERNVVSWTAMICG---------------------------------LADAGRVCEARK 94
            P+R V S     C                                   A  G + +A +
Sbjct: 531 KPDRFVCSSLLNACANLSAFEQGKQLHVHILKYGFVLDIFAGNSLVNMYAKCGSIDDAGR 590

Query: 95  LFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECC----M 150
            F E+ ER +VSW++M+ GL ++G   +A ++FN M  + V   +  +   +  C    +
Sbjct: 591 AFSELTERGIVSWSAMIGGLAQHGHGRQALQLFNQMLKEGVSPNHITLVSVLGACNHAGL 650

Query: 151 MGEAIVLFEEMEERNVVT-----WTSMISGYCRAGEVEEGYCLFRRMP-RKNVVSWTAMI 204
           + EA + FE MEE          +  MI    RAG++ E   L  +MP   N   W A++
Sbjct: 651 VTEAKLYFESMEELFGFKPMQEHYACMIDLLGRAGKINEAVELVNKMPFEANASVWGALL 710

Query: 205 GG 206
           G 
Sbjct: 711 GA 712



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 36/115 (31%), Positives = 56/115 (48%)

Query: 330 PLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNI 389
           P + ++S L      T ++  G QIH  + K+    D  + N LI++Y+KC     A  +
Sbjct: 54  PTSVSYSKLLSQCCTTKSLRPGLQIHAHITKSGLSDDPSIRNHLINLYSKCRXFGYARKL 113

Query: 390 FSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACS 444
                  DLVSW++++ G++ +GL    L  F  M   G   N  TF  +L ACS
Sbjct: 114 VDESSEPDLVSWSALISGYAQNGLGGGALMAFHEMHLLGVKCNEFTFSSVLKACS 168


>gi|296089484|emb|CBI39303.3| unnamed protein product [Vitis vinifera]
          Length = 723

 Score =  289 bits (740), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 196/614 (31%), Positives = 304/614 (49%), Gaps = 66/614 (10%)

Query: 37  MPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMP------ERNVVSWTAMICG-------- 82
           MP+RNVVS+N+++SG+ Q G   E   LF+E        ++   S    +CG        
Sbjct: 1   MPKRNVVSWNSLISGYTQMGFYHEVMNLFKEARMSDLRLDKFTFSNALSVCGRTLDLRLG 60

Query: 83  ---------------------LAD----AGRVCEARKLFEEMPERNVVSWNSMVVGLIRN 117
                                L D     GR+  AR +FE   E + VSWNS++ G +R 
Sbjct: 61  RLIHALITVSGLGGPVLLTNSLIDMYCKCGRIDWARLVFESADELDSVSWNSLIAGYVRI 120

Query: 118 GELNEARKVFNSMPIKNVISWNAMIAGY------------VECCMM--GEAIVLFEEMEE 163
           G  +E  ++   M +++ ++ N+   G             +EC  M  G A+ L  +++ 
Sbjct: 121 GSNDEMLRLLVKM-LRHGLNLNSYALGSALKACGSNFSSSIECGKMLHGCAVKLGLDLD- 178

Query: 164 RNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAW-----NGFHKESLL 218
             VV  T+++  Y + G++E+   +F+ MP  NVV + AMI GF       + F  E++ 
Sbjct: 179 --VVVGTALLDTYAKIGDLEDATKIFKLMPDPNVVMYNAMIAGFLQMETMADEFANEAMY 236

Query: 219 LFIEMKGICDNGNNCNVQSCNSMINGYIRF--GRLEEAQNLFDTVPVRDEISWTSMIDGY 276
           LF EM+      +     S     +    F  G+   AQ +F      DE    ++++ Y
Sbjct: 237 LFFEMQSRGMKPSEFTFSSILKACSTIEAFECGKQIHAQ-IFKYNLQSDEFIGNALVELY 295

Query: 277 LSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFS 336
              G + +    FH+ P  D V+WT++I G VQN  F     LF E+   G  P   T S
Sbjct: 296 SLSGSIEDGLKCFHSTPKLDVVSWTSLIVGHVQNGQFEGGLTLFHELLFSGRKPDEFTIS 355

Query: 337 VLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSR 396
           ++  A    A +  G QIH   +KT   +  I++N  I MYAKCG ID+A   F    + 
Sbjct: 356 IMLSACANLAAVKSGEQIHAYAIKTGIGNFTIIQNSQICMYAKCGDIDSANMTFKETKNP 415

Query: 397 DLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELF 456
           D+VSW+ M+   + HG A E + +FE M  SG  PN +TFLG+L ACSH GLV  G   F
Sbjct: 416 DIVSWSVMISSNAQHGCAKEAVDLFELMKGSGIAPNHITFLGVLVACSHGGLVEEGLRYF 475

Query: 457 NAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEG 516
             M   + I P  +H   +++LLGRAG++ EAE F++   FE D  +W +LL AC   + 
Sbjct: 476 EIMKKDHGITPNVKHSACIVDLLGRAGRLAEAESFIMDSGFEGDPVMWRSLLSACRVHKA 535

Query: 517 NAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWL 576
             +  +  A+R++EL+P  A ++V+L NIY  +G  +   ++R  M  +GV+K PG SW+
Sbjct: 536 T-DTGKRVAERVIELEPEAAASYVLLYNIYNDAGIQMPATEIRNLMKDRGVKKEPGLSWI 594

Query: 577 MRNGGIQMFLSGDK 590
                +  F++GD+
Sbjct: 595 EVGNVVHSFVAGDR 608


>gi|242055643|ref|XP_002456967.1| hypothetical protein SORBIDRAFT_03g046490 [Sorghum bicolor]
 gi|241928942|gb|EES02087.1| hypothetical protein SORBIDRAFT_03g046490 [Sorghum bicolor]
          Length = 785

 Score =  289 bits (740), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 196/666 (29%), Positives = 318/666 (47%), Gaps = 75/666 (11%)

Query: 4   RNHPKSLVVHLTSSITKYSKRGFID--EAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEA 61
           R HP + +    S +  Y + G      A  L   MP+RN VSYN ++S + + G    A
Sbjct: 27  RAHPTASLFLRNSLLAAYCRLGVGAPLHAARLIDEMPRRNAVSYNLLISSYSRAGLPGRA 86

Query: 62  RRLFE--------------------------EMPERNVVSWTAMICGL------------ 83
              F                           ++     V    ++ GL            
Sbjct: 87  LETFARARAAAGLRVDRFTYAAALAACSRALDLRTGKAVHAMTVLDGLGNGVFLSNSLAS 146

Query: 84  --ADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAM 141
             A  G + EAR++F+   E + VSWNS++ G +R G   E  KVF S+   + + WN+ 
Sbjct: 147 MYASCGEMGEARRVFDAAEEHDDVSWNSLLSGYVRAGAREETLKVF-SLMCHHGLGWNSF 205

Query: 142 IAG-YVECCMMGEAI----------VLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFR 190
             G  ++CC  G  +           + +   + ++   ++MI  Y + G +     LF+
Sbjct: 206 ALGSIIKCCASGSDVGRHIAEAVHGCVVKAGLDADLFLASAMIDMYAKRGALTNAVALFK 265

Query: 191 RMPRKNVVSWTAMIGGFAWNG------FHKESLLLFIEMKGICDNGNNCN----VQSCNS 240
            +P  NV+ + AMI GF  +         +E+L L+ EM+      +       +++CN 
Sbjct: 266 SVPDPNVIVFNAMIAGFCRDEAAVGKEVSREALSLYSEMQSRGMQPSEFTFSSILRACN- 324

Query: 241 MINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAW 300
            + G   FG+    Q L  +    D I  +++ID Y   G + + Y  F ++P +D V W
Sbjct: 325 -LAGEFGFGKQIHGQVLKHSFHDDDYIG-SALIDLYSDSGCMEDGYRCFRSLPKQDIVTW 382

Query: 301 TAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMK 360
           T+MISG VQNELF +A  LF E   +G+ P   T S +  A  + A    G QI C+ +K
Sbjct: 383 TSMISGCVQNELFEKALRLFQESICYGLKPDLFTMSSVMNACASLAVARTGEQIQCLAIK 442

Query: 361 TESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKV 420
                   + N  I M A+ G +D     F  M SRD+VSW++++   + HG A + L++
Sbjct: 443 YGFNRFTAMGNSFIHMCARSGDVDAVTRRFQEMESRDVVSWSAVISSHAQHGCARDALRI 502

Query: 421 FESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLG 480
           F  M+ +   PN VTFL +L+ACSH GLV  G   +  M + Y + P  +H   +++LLG
Sbjct: 503 FNEMMNAKVAPNEVTFLNVLTACSHGGLVDDGLRYYEIMKNEYGLSPTIKHVTCVVDLLG 562

Query: 481 RAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHV 540
           RAG++ +AE F+    F  D  +W +LL +C    G+ E  +  A ++++L+P ++ ++V
Sbjct: 563 RAGRLADAEAFIRDSAFHDDAVVWRSLLASCRI-HGDMERGQLVADQIMDLEPTSSASYV 621

Query: 541 VLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDK-------IPA 593
           +L N+Y  +G      K R  M  +GV+K PG SW+    G+  F++GDK       I  
Sbjct: 622 ILYNMYLDAGELSLASKTRDLMKERGVKKEPGLSWIELRSGVHSFVAGDKSHPESNAIYK 681

Query: 594 QVAEIL 599
           ++AE+L
Sbjct: 682 KLAEML 687


>gi|413946633|gb|AFW79282.1| hypothetical protein ZEAMMB73_599854 [Zea mays]
          Length = 863

 Score =  289 bits (739), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 197/637 (30%), Positives = 304/637 (47%), Gaps = 91/637 (14%)

Query: 46  NAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEM------ 99
           NAMLS  ++ G    A R+F +MPER+V SW  M+ G   +G + EA  L+  M      
Sbjct: 127 NAMLSMLVRFGETWHAWRVFAKMPERDVFSWNVMVGGYGKSGLLDEALDLYHRMMWAGVR 186

Query: 100 PE-----------RNVVSW----------------------NSMVVGLIRNGELNEARKV 126
           P+             V  W                      N+++    + G++  ARKV
Sbjct: 187 PDVYTFPCVLRSCGGVPDWRMGREVHAHVLRFGFGEEVDVLNALMTMYAKCGDVMAARKV 246

Query: 127 FNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEM----EERNVVTWTS----------- 171
           F+SM + + ISWNAMIAG+ E       + LF  M     + N++T TS           
Sbjct: 247 FDSMTVMDCISWNAMIAGHFENGECNAGLELFLTMLHDEVQPNLMTITSVTVASGLLSDV 306

Query: 172 ------------------------MISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGF 207
                                   +I  Y   G + +   +F RM  ++ ++WTAMI G+
Sbjct: 307 TFAKEMHGLAVKRGFAGDVAFCNSLIQMYASLGMMRQARTVFSRMDTRDAMTWTAMISGY 366

Query: 208 AWNGFHKESLLLF--IEMKGICDNGNNCNVQSCNSMINGYIRFG----RLEEAQNLFDTV 261
             NGF  ++L ++  +E+  +  +              G +  G     L E++     +
Sbjct: 367 EKNGFPDKALEVYALMEVNNVSPDDITIASALAACACLGSLDVGVKLHELAESKGFISYI 426

Query: 262 PVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFM 321
            V + I     ++ Y    ++  A  +F  M ++D V+W++MI+G   N    EA Y F 
Sbjct: 427 VVTNAI-----LEMYAKSKRIDKAIEVFKCMHEKDVVSWSSMIAGFCFNHRNFEALYYFR 481

Query: 322 EMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCG 381
            M A  V P + TF     A  AT  +  G++IH  +++   E +  L N LI +Y KCG
Sbjct: 482 HMLA-DVKPNSVTFIAALAACAATGALRSGKEIHAHVLRCGIEYEGYLPNALIDLYVKCG 540

Query: 382 VIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILS 441
               A+  F    ++D+VSWN M+ GF  HG  +  L  F  M++ G  P+ VTF+ +L 
Sbjct: 541 QTGYAWAQFCAHGAKDVVSWNIMIAGFVAHGHGDTALSFFNQMVKIGECPDEVTFVALLC 600

Query: 442 ACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDH 501
           ACS  G+VS GWELF++M + Y I P  +HY  M++LL RAG++ EA  F+  +P  PD 
Sbjct: 601 ACSRGGMVSEGWELFHSMTEKYSIVPNLKHYACMVDLLSRAGQLTEAYNFINEMPITPDA 660

Query: 502 RIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMD 561
            +WGALL  C     + E+ E AAK +L L+P +A  HV+LC++YA +    +  ++R  
Sbjct: 661 AVWGALLNGCRI-HRHVELGELAAKYVLALEPNDAGYHVLLCDLYADACLWDKLARVRKT 719

Query: 562 MGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
           M  KG+    GCSW+   G +  FL+ D+   Q+ EI
Sbjct: 720 MREKGLDHDSGCSWVEVKGVVHAFLTDDESHPQIREI 756



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 104/448 (23%), Positives = 190/448 (42%), Gaps = 51/448 (11%)

Query: 14  LTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEM----P 69
           L + +T Y+K G +  A+ +F  M   + +S+NAM++G  +NG  +    LF  M     
Sbjct: 227 LNALMTMYAKCGDVMAARKVFDSMTVMDCISWNAMIAGHFENGECNAGLELFLTMLHDEV 286

Query: 70  ERNVVSWTAMICGLADAGRVCEARKLFEEMPER----NVVSWNSMVVGLIRNGELNEARK 125
           + N+++ T++         V  A+++     +R    +V   NS++      G + +AR 
Sbjct: 287 QPNLMTITSVTVASGLLSDVTFAKEMHGLAVKRGFAGDVAFCNSLIQMYASLGMMRQART 346

Query: 126 VFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNV------------------- 166
           VF+ M  ++ ++W AMI+GY +     +A+ ++  ME  NV                   
Sbjct: 347 VFSRMDTRDAMTWTAMISGYEKNGFPDKALEVYALMEVNNVSPDDITIASALAACACLGS 406

Query: 167 --------------------VTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGG 206
                               V   +++  Y ++  +++   +F+ M  K+VVSW++MI G
Sbjct: 407 LDVGVKLHELAESKGFISYIVVTNAILEMYAKSKRIDKAIEVFKCMHEKDVVSWSSMIAG 466

Query: 207 FAWNGFHKESLLLFIEM-KGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRD 265
           F +N  + E+L  F  M   +  N              G +R G+   A  L   +    
Sbjct: 467 FCFNHRNFEALYYFRHMLADVKPNSVTFIAALAACAATGALRSGKEIHAHVLRCGIEYEG 526

Query: 266 EISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRA 325
            +   ++ID Y+  GQ   A+  F     +D V+W  MI+G V +     A   F +M  
Sbjct: 527 YLP-NALIDLYVKCGQTGYAWAQFCAHGAKDVVSWNIMIAGFVAHGHGDTALSFFNQMVK 585

Query: 326 HGVPPLNATFSVLFGAAGATANIDLGRQI-HCVLMKTESESDLILENCLISMYAKCGVID 384
            G  P   TF  L  A      +  G ++ H +  K     +L    C++ + ++ G + 
Sbjct: 586 IGECPDEVTFVALLCACSRGGMVSEGWELFHSMTEKYSIVPNLKHYACMVDLLSRAGQLT 645

Query: 385 NAYNIFSNM-VSRDLVSWNSMVMGFSHH 411
            AYN  + M ++ D   W +++ G   H
Sbjct: 646 EAYNFINEMPITPDAAVWGALLNGCRIH 673



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 83/348 (23%), Positives = 149/348 (42%), Gaps = 55/348 (15%)

Query: 11  VVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPE 70
           V    S I  Y+  G + +A+ +F  M  R+ +++ AM+SG+ +NG   +A  ++  M  
Sbjct: 325 VAFCNSLIQMYASLGMMRQARTVFSRMDTRDAMTWTAMISGYEKNGFPDKALEVYALMEV 384

Query: 71  RNV----VSWTAMICGLADAGRVCEARKLFEEMPERNVVSW----NSMVVGLIRNGELNE 122
            NV    ++  + +   A  G +    KL E    +  +S+    N+++    ++  +++
Sbjct: 385 NNVSPDDITIASALAACACLGSLDVGVKLHELAESKGFISYIVVTNAILEMYAKSKRIDK 444

Query: 123 ARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEM---EERNVVTW---------- 169
           A +VF  M  K+V+SW++MIAG+       EA+  F  M    + N VT+          
Sbjct: 445 AIEVFKCMHEKDVVSWSSMIAGFCFNHRNFEALYYFRHMLADVKPNSVTFIAALAACAAT 504

Query: 170 -------------------------TSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMI 204
                                     ++I  Y + G+    +  F     K+VVSW  MI
Sbjct: 505 GALRSGKEIHAHVLRCGIEYEGYLPNALIDLYVKCGQTGYAWAQFCAHGAKDVVSWNIMI 564

Query: 205 GGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVR 264
            GF  +G    +L  F +M  I   G   +  +  +++    R G + E   LF ++  +
Sbjct: 565 AGFVAHGHGDTALSFFNQMVKI---GECPDEVTFVALLCACSRGGMVSEGWELFHSMTEK 621

Query: 265 DEI-----SWTSMIDGYLSVGQVSNAYYLFHNMP-DRDAVAWTAMISG 306
             I      +  M+D     GQ++ AY   + MP   DA  W A+++G
Sbjct: 622 YSIVPNLKHYACMVDLLSRAGQLTEAYNFINEMPITPDAAVWGALLNG 669



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 71/297 (23%), Positives = 132/297 (44%), Gaps = 50/297 (16%)

Query: 9   SLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEM 68
           S +V   + +  Y+K   ID+A  +F+ M +++VVS+++M++GF  N R  EA   F  M
Sbjct: 424 SYIVVTNAILEMYAKSKRIDKAIEVFKCMHEKDVVSWSSMIAGFCFNHRNFEALYYFRHM 483

Query: 69  ---PERNVVSWTAMICGLADAGRVCEARKLFEEM----PERNVVSWNSMVVGLIRNGELN 121
               + N V++ A +   A  G +   +++   +     E      N+++   ++ G+  
Sbjct: 484 LADVKPNSVTFIAALAACAATGALRSGKEIHAHVLRCGIEYEGYLPNALIDLYVKCGQTG 543

Query: 122 EARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEM----EERNVVTWTSMISGYC 177
            A   F +   K+V+SWN MIAG+V       A+  F +M    E  + VT+ +++    
Sbjct: 544 YAWAQFCAHGAKDVVSWNIMIAGFVAHGHGDTALSFFNQMVKIGECPDEVTFVALLCACS 603

Query: 178 RAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQS 237
           R G V EG+ LF  M  K  +                                   N++ 
Sbjct: 604 RGGMVSEGWELFHSMTEKYSIV---------------------------------PNLKH 630

Query: 238 CNSMINGYIRFGRLEEAQNLFDTVPVR-DEISWTSMIDG-----YLSVGQVSNAYYL 288
              M++   R G+L EA N  + +P+  D   W ++++G     ++ +G+++  Y L
Sbjct: 631 YACMVDLLSRAGQLTEAYNFINEMPITPDAAVWGALLNGCRIHRHVELGELAAKYVL 687



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 45/77 (58%)

Query: 367 LILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLE 426
           L L N ++SM  + G   +A+ +F+ M  RD+ SWN MV G+   GL +E L ++  M+ 
Sbjct: 123 LRLGNAMLSMLVRFGETWHAWRVFAKMPERDVFSWNVMVGGYGKSGLLDEALDLYHRMMW 182

Query: 427 SGTHPNSVTFLGILSAC 443
           +G  P+  TF  +L +C
Sbjct: 183 AGVRPDVYTFPCVLRSC 199


>gi|297739440|emb|CBI29622.3| unnamed protein product [Vitis vinifera]
          Length = 603

 Score =  289 bits (739), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 159/470 (33%), Positives = 254/470 (54%), Gaps = 47/470 (10%)

Query: 124 RKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVE 183
           R     M  + V  WNAM++GY +    G+A  LF+ M ERNV+TWT+M++GY +  ++E
Sbjct: 63  RNAVIDMYARKVADWNAMVSGYWKWESEGQAQWLFDVMPERNVITWTAMVTGYAKVKDLE 122

Query: 184 EGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMIN 243
                F  MP ++VVSW                                      N+M++
Sbjct: 123 AARRYFDCMPERSVVSW--------------------------------------NAMLS 144

Query: 244 GYIRFGRLEEAQNLFDTV--PVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWT 301
           GY + G  EEA  LFD +    R+ ++W +MI  Y+ VG + +A  LF+ MP R+ V W 
Sbjct: 145 GYAQNGLAEEALRLFDEMLGAYRNSVTWNAMISAYMRVGDLDSARKLFNTMPGRNVVTWN 204

Query: 302 AMISGLVQNELFVEATYLFMEM-RAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMK 360
           +MI+G  QN     A  LF EM  A  + P   T   +  A G    ++LG  +   L +
Sbjct: 205 SMIAGYAQNGQSAMAIELFKEMITAKKLTPDEVTMVSVISACGHLGALELGNWVVRFLTE 264

Query: 361 TESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKV 420
            + +  +   N +I MY++CG +++A  +F  M +RD+VS+N+++ GF+ HG   E + +
Sbjct: 265 NQIKLSISGHNAMIFMYSRCGSMEDAKRVFQEMATRDVVSYNTLISGFAAHGHGVEAINL 324

Query: 421 FESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLG 480
             +M E G  P+ VTF+G+L+ACSHAGL+  G ++F ++ D     P  +HY  M++LLG
Sbjct: 325 MSTMKEGGIEPDRVTFIGVLTACSHAGLLEEGRKVFESIKD-----PAIDHYACMVDLLG 379

Query: 481 RAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHV 540
           R G++++A+  + R+P EP   ++G+LL A        E+ E AA +L EL+P N+   +
Sbjct: 380 RVGELEDAKRTMERMPMEPHAGVYGSLLNASRI-HKQVELGELAANKLFELEPDNSGNFI 438

Query: 541 VLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDK 590
           +L NIYA++GR  +  ++R  M   GV+K  G SW+   G +  F+  D+
Sbjct: 439 LLSNIYASAGRWKDVERIREAMKKGGVKKTTGWSWVEYGGKLHKFIVADR 488



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 112/349 (32%), Positives = 176/349 (50%), Gaps = 16/349 (4%)

Query: 53  LQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVV 112
           L +G  +  R    +M  R V  W AM+ G        +A+ LF+ MPERNV++W +MV 
Sbjct: 54  LGHGSDAFVRNAVIDMYARKVADWNAMVSGYWKWESEGQAQWLFDVMPERNVITWTAMVT 113

Query: 113 GLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEM--EERNVVTWT 170
           G  +  +L  AR+ F+ MP ++V+SWNAM++GY +  +  EA+ LF+EM    RN VTW 
Sbjct: 114 GYAKVKDLEAARRYFDCMPERSVVSWNAMLSGYAQNGLAEEALRLFDEMLGAYRNSVTWN 173

Query: 171 SMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNG 230
           +MIS Y R G+++    LF  MP +NVV+W +MI G+A NG    ++ LF EM  I    
Sbjct: 174 AMISAYMRVGDLDSARKLFNTMPGRNVVTWNSMIAGYAQNGQSAMAIELFKEM--ITAKK 231

Query: 231 NNCNVQSCNSMINGYIRFGRLEEAQ---NLFDTVPVRDEIS-WTSMIDGYLSVGQVSNAY 286
              +  +  S+I+     G LE             ++  IS   +MI  Y   G + +A 
Sbjct: 232 LTPDEVTMVSVISACGHLGALELGNWVVRFLTENQIKLSISGHNAMIFMYSRCGSMEDAK 291

Query: 287 YLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATA 346
            +F  M  RD V++  +ISG   +   VEA  L   M+  G+ P   TF  +  A     
Sbjct: 292 RVFQEMATRDVVSYNTLISGFAAHGHGVEAINLMSTMKEGGIEPDRVTFIGVLTACSHAG 351

Query: 347 NIDLGRQIHCVLMKTESESDLILEN--CLISMYAKCGVIDNAYNIFSNM 393
            ++ GR++       ES  D  +++  C++ +  + G +++A      M
Sbjct: 352 LLEEGRKVF------ESIKDPAIDHYACMVDLLGRVGELEDAKRTMERM 394



 Score =  161 bits (408), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 102/307 (33%), Positives = 162/307 (52%), Gaps = 45/307 (14%)

Query: 29  EAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGR 88
           +A+ LF +MP+RNV+++ AM++G+ +   L  ARR F+ MPER+VVSW AM+ G A  G 
Sbjct: 92  QAQWLFDVMPERNVITWTAMVTGYAKVKDLEAARRYFDCMPERSVVSWNAMLSGYAQNGL 151

Query: 89  VCEARKLFEEM--PERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYV 146
             EA +LF+EM    RN V+WN+M+   +R G+L+ ARK+FN+MP +NV++WN+MIAGY 
Sbjct: 152 AEEALRLFDEMLGAYRNSVTWNAMISAYMRVGDLDSARKLFNTMPGRNVVTWNSMIAGYA 211

Query: 147 ECCMMGEAIVLFEEM--------EERNVVT---------------WT------------- 170
           +      AI LF+EM        +E  +V+               W              
Sbjct: 212 QNGQSAMAIELFKEMITAKKLTPDEVTMVSVISACGHLGALELGNWVVRFLTENQIKLSI 271

Query: 171 ----SMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGI 226
               +MI  Y R G +E+   +F+ M  ++VVS+  +I GFA +G   E++ L   MK  
Sbjct: 272 SGHNAMIFMYSRCGSMEDAKRVFQEMATRDVVSYNTLISGFAAHGHGVEAINLMSTMK-- 329

Query: 227 CDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAY 286
            + G   +  +   ++      G LEE + +F+++       +  M+D    VG++ +A 
Sbjct: 330 -EGGIEPDRVTFIGVLTACSHAGLLEEGRKVFESIKDPAIDHYACMVDLLGRVGELEDAK 388

Query: 287 YLFHNMP 293
                MP
Sbjct: 389 RTMERMP 395


>gi|449451283|ref|XP_004143391.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g37570-like [Cucumis sativus]
 gi|449519310|ref|XP_004166678.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g37570-like [Cucumis sativus]
          Length = 565

 Score =  289 bits (739), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 173/525 (32%), Positives = 277/525 (52%), Gaps = 23/525 (4%)

Query: 64  LFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEA 123
           L ++  E++    T  I        +  +  +F+ +   +   WNS+V G     +  + 
Sbjct: 52  LIQKGLEQDSFLVTQFISASNSVAHISYSTSVFDRVLSPSTFLWNSLVSGYCAKLQFVDI 111

Query: 124 RKVFNSMPIKNVISWNAMIAGYVECCM----MGEAIVLFEEM----EERNVVTWTSMISG 175
             ++  M  ++           ++ C     M E + L   +     + ++   TS+++ 
Sbjct: 112 ISLYVRMKREDGAPDRYTFPSLLKVCASEGKMMEGMALHGSILRCGVDEDIYVTTSLVNL 171

Query: 176 YCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNV 235
           Y + G ++    +F  M  +NVVSWTAMI G++       S+   +E K + D     NV
Sbjct: 172 YGKGGLIDCARKVFDGMSERNVVSWTAMIVGYS-------SIGNLVEAKRLFDLMPERNV 224

Query: 236 QSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDR 295
            S N++I GY++ G ++ A+  FD +P ++ +S+T+MIDGY   G + +A  LF   P+R
Sbjct: 225 ASWNAIIGGYMKMGDVKSAEKAFDEMPEKNVVSFTTMIDGYAKAGDMLSARNLFQKAPER 284

Query: 296 DAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIH 355
           D +AW+A+ISG  QN    EA   F+EM +  V P     + L  A     N+DL + + 
Sbjct: 285 DIIAWSALISGYTQNGQPNEAVKTFLEMSSRNVKPDKFVLTSLMLACSQLGNLDLAKWVD 344

Query: 356 CVLMKTESESDLI---LENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHG 412
                T    DL    +   LI M AKCG ++ A  +F  M  RDL+S+ S++ G S HG
Sbjct: 345 S--YATRCSVDLRGAHVTAALIDMNAKCGNMERAMYLFEKMPKRDLISYCSVMQGLSIHG 402

Query: 413 LANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHY 472
             ++ + +FE ML     P+ V F  IL+ACS AGLV  GW  F  M   Y + P  +HY
Sbjct: 403 HGDQAVSLFERMLGEDLTPDDVAFTVILTACSRAGLVDEGWHYFEMMRCKYSMVPSVDHY 462

Query: 473 VSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACG-FCEGNAEIAEHAAKRLLEL 531
             +++LL R+G++KEA E +  +P +     WGALLGAC  +C+  +E+AE  A RL+E+
Sbjct: 463 ACIVDLLSRSGRLKEAYELIKSVPVQSHAGAWGALLGACKLYCD--SELAEVVASRLIEI 520

Query: 532 DPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWL 576
           +P NA  +V+L NIYAA+ R ++   +R  M  +G+RK+PGCSW+
Sbjct: 521 EPENAGNYVLLSNIYAAADRWLDVSAVRNQMNERGLRKIPGCSWI 565



 Score =  158 bits (400), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 102/338 (30%), Positives = 167/338 (49%), Gaps = 53/338 (15%)

Query: 15  TSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVV 74
           TS +  Y K G ID A+ +F  M +RNVVS+ AM+ G+   G L EA+RLF+ MPERNV 
Sbjct: 166 TSLVNLYGKGGLIDCARKVFDGMSERNVVSWTAMIVGYSSIGNLVEAKRLFDLMPERNVA 225

Query: 75  SWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKN 134
           SW A+I G    G V  A K F+EMPE+NVVS+ +M+ G  + G++  AR +F   P ++
Sbjct: 226 SWNAIIGGYMKMGDVKSAEKAFDEMPEKNVVSFTTMIDGYAKAGDMLSARNLFQKAPERD 285

Query: 135 VISWNAMIAGYVECCMMGEAIVLFEEMEERNV----------------------VTWTSM 172
           +I+W+A+I+GY +     EA+  F EM  RNV                        W   
Sbjct: 286 IIAWSALISGYTQNGQPNEAVKTFLEMSSRNVKPDKFVLTSLMLACSQLGNLDLAKWVDS 345

Query: 173 ISGYC------------------RAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHK 214
            +  C                  + G +E    LF +MP+++++S+ +++ G + +G   
Sbjct: 346 YATRCSVDLRGAHVTAALIDMNAKCGNMERAMYLFEKMPKRDLISYCSVMQGLSIHGHGD 405

Query: 215 ESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMID 274
           +++ LF  M G     ++    +   ++    R G ++E  + F+   +R + S    +D
Sbjct: 406 QAVSLFERMLGEDLTPDDV---AFTVILTACSRAGLVDEGWHYFEM--MRCKYSMVPSVD 460

Query: 275 GYLSV-------GQVSNAYYLFHNMP-DRDAVAWTAMI 304
            Y  +       G++  AY L  ++P    A AW A++
Sbjct: 461 HYACIVDLLSRSGRLKEAYELIKSVPVQSHAGAWGALL 498



 Score = 46.2 bits (108), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 37/151 (24%), Positives = 63/151 (41%), Gaps = 14/151 (9%)

Query: 346 ANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMV 405
            +IDL  Q+H  L++   E D  L    IS       I  + ++F  ++S     WNS+V
Sbjct: 41  THIDL-HQVHAHLIQKGLEQDSFLVTQFISASNSVAHISYSTSVFDRVLSPSTFLWNSLV 99

Query: 406 MGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMF----- 460
            G+       + + ++  M      P+  TF  +L  C+  G +  G  L  ++      
Sbjct: 100 SGYCAKLQFVDIISLYVRMKREDGAPDRYTFPSLLKVCASEGKMMEGMALHGSILRCGVD 159

Query: 461 -DVYKIQPGPEHYVSMINLLGRAGKIKEAEE 490
            D+Y          S++NL G+ G I  A +
Sbjct: 160 EDIYVT-------TSLVNLYGKGGLIDCARK 183


>gi|224120094|ref|XP_002331135.1| predicted protein [Populus trichocarpa]
 gi|222872863|gb|EEF09994.1| predicted protein [Populus trichocarpa]
          Length = 799

 Score =  289 bits (739), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 193/615 (31%), Positives = 309/615 (50%), Gaps = 59/615 (9%)

Query: 30  AKALFQLMPQR--NVVSYNAMLSGFLQNGRLSEARRLFEEM------PER---------- 71
           A+ +F  MP R  NVV +N ++  +  NG   EA  L+ +M      P R          
Sbjct: 70  ARHVFDKMPHRPKNVVLWNLLIRAYAWNGPYEEAIDLYYKMLGYGITPNRFTFPFVLKAC 129

Query: 72  -----------------------NVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWN 108
                                  NV   TA++   A  G + +A+++F++M +R+VV+WN
Sbjct: 130 SALKEASEGREIHCDIKRLRLESNVYVSTALVDFYAKCGCLDDAKEVFDKMHKRDVVAWN 189

Query: 109 SMVVGL-IRNGELNEARKVFNSMPIKNVISWNA-MIAGYVECCMMGEAIVLFEEMEE--- 163
           SM+ G  +  G  +E  ++   M  +N +S N+  I G +       ++   +E+     
Sbjct: 190 SMISGFSLHEGSYDEVARLLVQM--QNDVSPNSSTIVGVLPAVAQVNSLRHGKEIHGFCV 247

Query: 164 -----RNVVTWTSMISGYCRAGEVEEGYCLFRRMP-RKNVVSWTAMIGGFAWNGFHKESL 217
                 +VV  T ++  Y +   ++    +F  M   KN V+W+AM+G +    F +E+L
Sbjct: 248 RRGFVGDVVVGTGILDVYGKCQCIDYARRIFDMMGIVKNEVTWSAMVGAYVVCDFMREAL 307

Query: 218 LLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNL----FDTVPVRDEISWTSMI 273
            LF ++  + D+    +  +  ++I        L     L      +  V D +   +++
Sbjct: 308 ELFCQLLMLKDDVIVLSAVTLATVIRVCANLTDLSTGTCLHCYAIKSGFVLDLMVGNTLL 367

Query: 274 DGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNA 333
             Y   G ++ A   F+ M  RDAV++TA+ISG VQN    E   +F+EM+  G+ P  A
Sbjct: 368 SMYAKCGIINGAMRFFNEMDLRDAVSFTAIISGYVQNGNSEEGLRMFLEMQLSGINPEKA 427

Query: 334 TFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNM 393
           T + +  A    A +  G   HC  +     +D ++ N LI MYAKCG ID A  +F  M
Sbjct: 428 TLASVLPACAHLAGLHYGSCSHCYAIICGFTADTMICNALIDMYAKCGKIDTARKVFDRM 487

Query: 394 VSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGW 453
             R +VSWN+M++ +  HG+  E L +F++M   G  P+ VTF+ ++SACSH+GLV+ G 
Sbjct: 488 HKRGIVSWNTMIIAYGIHGIGLEALLLFDNMQSEGLKPDDVTFICLISACSHSGLVAEGK 547

Query: 454 ELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGF 513
             FNAM   + I P  EHY  M++LL RAG  KE   F+ ++P EPD R+WGALL AC  
Sbjct: 548 YWFNAMTQDFGIIPRMEHYACMVDLLSRAGLFKEVHSFIEKMPLEPDVRVWGALLSACRV 607

Query: 514 CEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGC 573
            + N E+ E  +K++ +L P +    V+L N+Y+A GR  +  ++R     +G  K PGC
Sbjct: 608 YK-NVELGEGVSKKIQKLGPESTGNFVLLSNMYSAVGRWDDAAQVRFTQKEQGFEKSPGC 666

Query: 574 SWLMRNGGIQMFLSG 588
           SW+  +G +  FL G
Sbjct: 667 SWIEISGVVHTFLGG 681



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 78/284 (27%), Positives = 136/284 (47%), Gaps = 7/284 (2%)

Query: 266 EISWTSMIDGYLSVGQVSNAYYLFHNMPDR--DAVAWTAMISGLVQNELFVEATYLFMEM 323
           ++ +  ++D Y++  ++  A ++F  MP R  + V W  +I     N  + EA  L+ +M
Sbjct: 51  DVPFEKLVDLYIACSELKIARHVFDKMPHRPKNVVLWNLLIRAYAWNGPYEEAIDLYYKM 110

Query: 324 RAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVI 383
             +G+ P   TF  +  A  A      GR+IHC + +   ES++ +   L+  YAKCG +
Sbjct: 111 LGYGITPNRFTFPFVLKACSALKEASEGREIHCDIKRLRLESNVYVSTALVDFYAKCGCL 170

Query: 384 DNAYNIFSNMVSRDLVSWNSMVMGFS-HHGLANETLKVFESMLESGTHPNSVTFLGILSA 442
           D+A  +F  M  RD+V+WNSM+ GFS H G  +E  ++   M ++   PNS T +G+L A
Sbjct: 171 DDAKEVFDKMHKRDVVAWNSMISGFSLHEGSYDEVARLLVQM-QNDVSPNSSTIVGVLPA 229

Query: 443 CSHAGLVSRGWELFNAMFDVYKIQPGPEHY-VSMINLLGRAGKIKEAEEFVLRLPFEPDH 501
            +    +  G E+    F V +   G       ++++ G+   I  A      +    + 
Sbjct: 230 VAQVNSLRHGKEIHG--FCVRRGFVGDVVVGTGILDVYGKCQCIDYARRIFDMMGIVKNE 287

Query: 502 RIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNI 545
             W A++GA   C+   E  E   + L+  D +   + V L  +
Sbjct: 288 VTWSAMVGAYVVCDFMREALELFCQLLMLKDDVIVLSAVTLATV 331



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 109/450 (24%), Positives = 194/450 (43%), Gaps = 93/450 (20%)

Query: 15  TSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGF-LQNGRLSEARRLFEEMPERNV 73
           T+ +  Y+K G +D+AK +F  M +R+VV++N+M+SGF L  G   E  RL  +M + +V
Sbjct: 158 TALVDFYAKCGCLDDAKEVFDKMHKRDVVAWNSMISGFSLHEGSYDEVARLLVQM-QNDV 216

Query: 74  VSWTAMICG----LADAGRVCEARKLFEEMPERNVVSWNSMVVGLI----RNGELNEARK 125
              ++ I G    +A    +   +++      R  V    +  G++    +   ++ AR+
Sbjct: 217 SPNSSTIVGVLPAVAQVNSLRHGKEIHGFCVRRGFVGDVVVGTGILDVYGKCQCIDYARR 276

Query: 126 VFNSMPI-KNVISWNAMIAGYVECCMMGEAIVLFEE--MEERNVVTWT------------ 170
           +F+ M I KN ++W+AM+  YV C  M EA+ LF +  M + +V+  +            
Sbjct: 277 IFDMMGIVKNEVTWSAMVGAYVVCDFMREALELFCQLLMLKDDVIVLSAVTLATVIRVCA 336

Query: 171 ----------------------------SMISGYCRAGEVEEGYCLFRRMPRKNVVSWTA 202
                                       +++S Y + G +      F  M  ++ VS+TA
Sbjct: 337 NLTDLSTGTCLHCYAIKSGFVLDLMVGNTLLSMYAKCGIINGAMRFFNEMDLRDAVSFTA 396

Query: 203 MIGGFAWNGFHKESLLLFIEMK--------------------------GICDN------G 230
           +I G+  NG  +E L +F+EM+                          G C +      G
Sbjct: 397 IISGYVQNGNSEEGLRMFLEMQLSGINPEKATLASVLPACAHLAGLHYGSCSHCYAIICG 456

Query: 231 NNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFH 290
              +   CN++I+ Y + G+++ A+ +FD +  R  +SW +MI  Y   G    A  LF 
Sbjct: 457 FTADTMICNALIDMYAKCGKIDTARKVFDRMHKRGIVSWNTMIIAYGIHGIGLEALLLFD 516

Query: 291 NMPDR----DAVAWTAMISGLVQNELFVEATYLFMEM-RAHGVPPLNATFSVLFGAAGAT 345
           NM       D V +  +IS    + L  E  Y F  M +  G+ P    ++ +       
Sbjct: 517 NMQSEGLKPDDVTFICLISACSHSGLVAEGKYWFNAMTQDFGIIPRMEHYACM---VDLL 573

Query: 346 ANIDLGRQIHCVLMKTESESDLILENCLIS 375
           +   L +++H  + K   E D+ +   L+S
Sbjct: 574 SRAGLFKEVHSFIEKMPLEPDVRVWGALLS 603



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 75/303 (24%), Positives = 146/303 (48%), Gaps = 27/303 (8%)

Query: 167 VTWTSMISGYCRAGEVEEGYCLFRRMPR--KNVVSWTAMIGGFAWNGFHKESLLLFIEMK 224
           V +  ++  Y    E++    +F +MP   KNVV W  +I  +AWNG ++E++ L+ +M 
Sbjct: 52  VPFEKLVDLYIACSELKIARHVFDKMPHRPKNVVLWNLLIRAYAWNGPYEEAIDLYYKML 111

Query: 225 GICDNGNNCN----VQSCNSMING------YIRFGRLEEAQNLFDTVPVRDEISWTSMID 274
           G     N       +++C+++         +    RL    N++ +         T+++D
Sbjct: 112 GYGITPNRFTFPFVLKACSALKEASEGREIHCDIKRLRLESNVYVS---------TALVD 162

Query: 275 GYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNE-LFVEATYLFMEMRAHGVPPLNA 333
            Y   G + +A  +F  M  RD VAW +MISG   +E  + E   L ++M+ + V P ++
Sbjct: 163 FYAKCGCLDDAKEVFDKMHKRDVVAWNSMISGFSLHEGSYDEVARLLVQMQ-NDVSPNSS 221

Query: 334 TFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNM 393
           T   +  A     ++  G++IH   ++     D+++   ++ +Y KC  ID A  IF  M
Sbjct: 222 TIVGVLPAVAQVNSLRHGKEIHGFCVRRGFVGDVVVGTGILDVYGKCQCIDYARRIFDMM 281

Query: 394 -VSRDLVSWNSMVMGFSHHGLANETLKVFESML---ESGTHPNSVTFLGILSACSHAGLV 449
            + ++ V+W++MV  +       E L++F  +L   +     ++VT   ++  C++   +
Sbjct: 282 GIVKNEVTWSAMVGAYVVCDFMREALELFCQLLMLKDDVIVLSAVTLATVIRVCANLTDL 341

Query: 450 SRG 452
           S G
Sbjct: 342 STG 344


>gi|224121686|ref|XP_002318647.1| predicted protein [Populus trichocarpa]
 gi|222859320|gb|EEE96867.1| predicted protein [Populus trichocarpa]
          Length = 744

 Score =  289 bits (739), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 188/636 (29%), Positives = 313/636 (49%), Gaps = 80/636 (12%)

Query: 21  YSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPE------RNVV 74
           Y K G    A  +F+ M +R+ VS+N M+SGF Q+G   ++  +F  M +       N V
Sbjct: 84  YWKCGAGGNAVDMFERMEERDSVSWNTMISGFCQSGDYVKSLVMFRRMVKECGGSYHNRV 143

Query: 75  SWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLI----RNGELNEARKVF--- 127
           +  A +   A    +    ++   + ++ V S   +V  LI    + G++  A  VF   
Sbjct: 144 ACLAALSSCASIKCLTHGLEIHGFLVKKGVDSDEFLVSALIEMYMKCGDIKNAENVFERI 203

Query: 128 --NSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEE---------------------- 163
             N +  +N+  WN MI GYV    +  A+ LF EM E                      
Sbjct: 204 RDNELVGRNMAVWNVMILGYVSNECLSLALELFVEMLELGISPDSSTVVVVLVLCSQLLD 263

Query: 164 -----------------RNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGG 206
                             +V   T+++  Y + G+ E    +F+R    N+V W +++  
Sbjct: 264 LAVGKQIHGLILGLGLDDDVRVGTALMEMYFKCGDPETSLQIFKRSQNHNLVMWGSVMLN 323

Query: 207 FAWNGFHKESLLLFIEMKGICDNGNN----CNVQSCNSM--------INGY-IRFGRLEE 253
            A NG+  E+L  F E    C   +       +++C+ +        I+G+ I+ G    
Sbjct: 324 CAQNGYPNEALEFFSEFMLDCGFPDPVILLAALRACSFLSLKPRGMAIHGFAIKMG---- 379

Query: 254 AQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELF 313
               FD+    D     +++D Y   G +  A  +F+ +  RD V+W A+ISG  QN+  
Sbjct: 380 ----FDS----DVFVGGALVDFYGKCGDMEYAQQVFYGLSTRDLVSWNALISGFAQNKCA 431

Query: 314 VEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCL 373
            EA   F +M++  + P   T + +       + + L +++HC L++   E++ ++ N L
Sbjct: 432 DEALKAFRDMQSKQIKPNTVTMACILSVCTHLSVMILCKEVHCYLLRHWFETNALVNNSL 491

Query: 374 ISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNS 433
           IS YAKCG I ++  +F  +  R+ V+WNS+++GF  HG  +E    FE M E+   P+ 
Sbjct: 492 ISAYAKCGDIHSSRTVFEKLPVRNEVTWNSILLGFGMHGRTDEMFATFEKMKEANIKPDH 551

Query: 434 VTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVL 493
            TF  +LS+CSH+G V  GW+ FN+M + Y ++P  E Y  M++LLGRAG + +A + ++
Sbjct: 552 GTFTSLLSSCSHSGKVDAGWKYFNSMMEDYNLEPRVEQYTCMVDLLGRAGNLNQAYDLIM 611

Query: 494 RLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHV 553
            +P  PD RIWG+LL +C    GN ++AE  A  + ELD  +    V+L N+Y  SG   
Sbjct: 612 SMPCSPDDRIWGSLLASCKN-HGNTKLAEVVANHIFELDASSVGYRVLLANLYEDSGNLN 670

Query: 554 EEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGD 589
           E  ++R D+   G++K PGCSW+  +  I +F++GD
Sbjct: 671 EVFRVRTDIKQMGLKKQPGCSWIEVDNSIHIFVAGD 706



 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 110/410 (26%), Positives = 192/410 (46%), Gaps = 49/410 (11%)

Query: 132 IKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRR 191
           ++++   N+++  Y +C   G A+ +FE MEER+ V+W +MISG+C++G+  +   +FRR
Sbjct: 71  LQDIFVKNSLLGMYWKCGAGGNAVDMFERMEERDSVSWNTMISGFCQSGDYVKSLVMFRR 130

Query: 192 MPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRL 251
           M ++   S+   +   A                          + SC S+    +  G L
Sbjct: 131 MVKECGGSYHNRVACLA-------------------------ALSSCASI--KCLTHG-L 162

Query: 252 EEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPD-----RDAVAWTAMISG 306
           E    L       DE   +++I+ Y+  G + NA  +F  + D     R+   W  MI G
Sbjct: 163 EIHGFLVKKGVDSDEFLVSALIEMYMKCGDIKNAENVFERIRDNELVGRNMAVWNVMILG 222

Query: 307 LVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESD 366
            V NE    A  LF+EM   G+ P ++T  V+        ++ +G+QIH +++    + D
Sbjct: 223 YVSNECLSLALELFVEMLELGISPDSSTVVVVLVLCSQLLDLAVGKQIHGLILGLGLDDD 282

Query: 367 LILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVF-ESML 425
           + +   L+ MY KCG  + +  IF    + +LV W S+++  + +G  NE L+ F E ML
Sbjct: 283 VRVGTALMEMYFKCGDPETSLQIFKRSQNHNLVMWGSVMLNCAQNGYPNEALEFFSEFML 342

Query: 426 ESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYV----SMINLLGR 481
           + G  P+ V  L  L ACS   L  RG  +       + I+ G +  V    ++++  G+
Sbjct: 343 DCG-FPDPVILLAALRACSFLSLKPRGMAIHG-----FAIKMGFDSDVFVGGALVDFYGK 396

Query: 482 AGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLEL 531
            G ++ A++    L    D   W AL+   GF +   + A+ A K   ++
Sbjct: 397 CGDMEYAQQVFYGLS-TRDLVSWNALIS--GFAQN--KCADEALKAFRDM 441



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 63/197 (31%), Positives = 99/197 (50%), Gaps = 6/197 (3%)

Query: 303 MISGLVQNELFVEATYLFMEMRAHGVPPLNATF-SVLFGAAGATANIDLGRQIHCVLMKT 361
           MI    ++  F +A  ++++    G P     F   L  A G   +++ G+QIH  L+K 
Sbjct: 9   MIKECTEDGFFEDAIRVYLDFIECGFPVEEFRFFPCLIKAFGGLYDVNKGKQIHGHLLKF 68

Query: 362 ESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVF 421
               D+ ++N L+ MY KCG   NA ++F  M  RD VSWN+M+ GF   G   ++L +F
Sbjct: 69  GFLQDIFVKNSLLGMYWKCGAGGNAVDMFERMEERDSVSWNTMISGFCQSGDYVKSLVMF 128

Query: 422 ESMLE--SGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVS-MINL 478
             M++   G++ N V  L  LS+C+    ++ G E+    F V K     E  VS +I +
Sbjct: 129 RRMVKECGGSYHNRVACLAALSSCASIKCLTHGLEIHG--FLVKKGVDSDEFLVSALIEM 186

Query: 479 LGRAGKIKEAEEFVLRL 495
             + G IK AE    R+
Sbjct: 187 YMKCGDIKNAENVFERI 203



 Score = 65.5 bits (158), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 42/125 (33%), Positives = 67/125 (53%), Gaps = 9/125 (7%)

Query: 16  SSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVV- 74
           S I+ Y+K G I  ++ +F+ +P RN V++N++L GF  +GR  E    FE+M E N+  
Sbjct: 490 SLISAYAKCGDIHSSRTVFEKLPVRNEVTWNSILLGFGMHGRTDEMFATFEKMKEANIKP 549

Query: 75  ---SWTAMICGLADAGRVCEARKLFEEMPER-----NVVSWNSMVVGLIRNGELNEARKV 126
              ++T+++   + +G+V    K F  M E       V  +  MV  L R G LN+A  +
Sbjct: 550 DHGTFTSLLSSCSHSGKVDAGWKYFNSMMEDYNLEPRVEQYTCMVDLLGRAGNLNQAYDL 609

Query: 127 FNSMP 131
             SMP
Sbjct: 610 IMSMP 614


>gi|449514605|ref|XP_004164425.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g49170, chloroplastic-like [Cucumis sativus]
          Length = 849

 Score =  289 bits (739), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 193/647 (29%), Positives = 322/647 (49%), Gaps = 66/647 (10%)

Query: 12  VHLTSSITKYSKRGFIDEAKALFQLM-PQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPE 70
           V L S I+ YSK G  ++A ++F+LM   R+++S++AM+S F  N     A   F +M E
Sbjct: 102 VTLNSLISLYSKCGQWEKATSIFRLMGSSRDLISWSAMVSCFANNNMGFRALLTFVDMIE 161

Query: 71  RN------------------------------------VVSWTAMICGLADA-----GRV 89
                                                 + S   + CGL D      G +
Sbjct: 162 NGYYPNEYCFAAATRACSTAEFVSVGDSIFGFVIKTGYLQSDVCVGCGLIDMFVKGRGDL 221

Query: 90  CEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECC 149
             A K+FE+MPERN V+W  M+  L++ G   EA  +F  M           ++G +  C
Sbjct: 222 VSAFKVFEKMPERNAVTWTLMITRLMQFGYAGEAIDLFLDMIFSGYEPDRFTLSGVISAC 281

Query: 150 MMGEAIVLFEEMEERNV--------VTWTSMISGYCRAGEVEEGYC----LFRRMPRKNV 197
              E ++L +++  + +             +I+ Y +   V+   C    +F ++   NV
Sbjct: 282 ANMELLLLGQQLHSQAIRHGLTLDRCVGCCLINMYAKCS-VDGSMCAARKIFDQILDHNV 340

Query: 198 VSWTAMIGGFAWNG-FHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQN 256
            SWTAMI G+   G + +E+L LF   +G+       N  + +S +        L   + 
Sbjct: 341 FSWTAMITGYVQKGGYDEEALDLF---RGMILTHVIPNHFTFSSTLKACANLAALRIGEQ 397

Query: 257 LFDTVPVRDEISWT-----SMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNE 311
           +F T  V+   S       S+I  Y   G++ +A   F  + +++ +++  +I    +N 
Sbjct: 398 VF-THAVKLGFSSVNCVANSLISMYARSGRIDDARKAFDILFEKNLISYNTVIDAYAKNL 456

Query: 312 LFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILEN 371
              EA  LF E+   G+     TF+ L   A +   I  G QIH  ++K+  + +  + N
Sbjct: 457 NSEEALELFNEIEDQGMGASAFTFASLLSGAASIGTIGKGEQIHARVIKSGLKLNQSVCN 516

Query: 372 CLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHP 431
            LISMY++CG I++A+ +F +M  R+++SW S++ GF+ HG A + L++F  MLE G  P
Sbjct: 517 ALISMYSRCGNIESAFQVFEDMEDRNVISWTSIITGFAKHGFATQALELFHKMLEEGVRP 576

Query: 432 NSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEF 491
           N VT++ +LSACSH GLV+ GW+ F +M+  + + P  EHY  ++++LGR+G + EA +F
Sbjct: 577 NEVTYIAVLSACSHVGLVNEGWKHFKSMYTEHGVIPRMEHYACIVDILGRSGSLSEAIQF 636

Query: 492 VLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGR 551
           +  +P++ D  +W   LGAC    GN E+ +HAAK ++E +P +  A+++L N+YA+  +
Sbjct: 637 INSMPYKADALVWRTFLGACR-VHGNLELGKHAAKMIIEQEPHDPAAYILLSNLYASISK 695

Query: 552 HVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
             E   +R  M  K + K  GCSW+     +  F  GD    + AEI
Sbjct: 696 WDEVSNIRKAMKEKXLIKEAGCSWVEVENKVHKFYVGDTSHPKAAEI 742



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 57/194 (29%), Positives = 95/194 (48%), Gaps = 3/194 (1%)

Query: 265 DEISWTSMIDGYLSVGQVSNAYYLFHNM-PDRDAVAWTAMISGLVQNELFVEATYLFMEM 323
           D ++  S+I  Y   GQ   A  +F  M   RD ++W+AM+S    N +   A   F++M
Sbjct: 100 DSVTLNSLISLYSKCGQWEKATSIFRLMGSSRDLISWSAMVSCFANNNMGFRALLTFVDM 159

Query: 324 RAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTES-ESDLILENCLISMYAKC-G 381
             +G  P    F+    A      + +G  I   ++KT   +SD+ +   LI M+ K  G
Sbjct: 160 IENGYYPNEYCFAAATRACSTAEFVSVGDSIFGFVIKTGYLQSDVCVGCGLIDMFVKGRG 219

Query: 382 VIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILS 441
            + +A+ +F  M  R+ V+W  M+      G A E + +F  M+ SG  P+  T  G++S
Sbjct: 220 DLVSAFKVFEKMPERNAVTWTLMITRLMQFGYAGEAIDLFLDMIFSGYEPDRFTLSGVIS 279

Query: 442 ACSHAGLVSRGWEL 455
           AC++  L+  G +L
Sbjct: 280 ACANMELLLLGQQL 293



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 66/241 (27%), Positives = 102/241 (42%), Gaps = 36/241 (14%)

Query: 308 VQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDL 367
           + N    +A      M   G  P   T+S+       T + D+G  +H  L +++ + D 
Sbjct: 42  INNGRLHKAISTLEHMVHQGSHPDLQTYSLFLKKCIRTRSFDIGTLVHEKLTQSDLQLDS 101

Query: 368 ILENCLISMYAKCGVIDNAYNIFSNM-VSRDLVSWNSMVMGFSHHGLANETLKVFESMLE 426
           +  N LIS+Y+KCG  + A +IF  M  SRDL+SW++MV  F+++ +    L  F  M+E
Sbjct: 102 VTLNSLISLYSKCGQWEKATSIFRLMGSSRDLISWSAMVSCFANNNMGFRALLTFVDMIE 161

Query: 427 SGTHPNSVTFLGILSACSHAGLVSRGWELFN----------------------------- 457
           +G +PN   F     ACS A  VS G  +F                              
Sbjct: 162 NGYYPNEYCFAAATRACSTAEFVSVGDSIFGFVIKTGYLQSDVCVGCGLIDMFVKGRGDL 221

Query: 458 -AMFDVYKIQP--GPEHYVSMINLLGRAGKIKEAEEFVLRLPF---EPDHRIWGALLGAC 511
            + F V++  P      +  MI  L + G   EA +  L + F   EPD      ++ AC
Sbjct: 222 VSAFKVFEKMPERNAVTWTLMITRLMQFGYAGEAIDLFLDMIFSGYEPDRFTLSGVISAC 281

Query: 512 G 512
            
Sbjct: 282 A 282


>gi|356555170|ref|XP_003545909.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Glycine max]
          Length = 741

 Score =  289 bits (739), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 172/571 (30%), Positives = 290/571 (50%), Gaps = 44/571 (7%)

Query: 48  MLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSW 107
           +L   L  G    A++LF+ +P+ +  + + +I      G   EA +L+  +  R +   
Sbjct: 72  LLKAALNVGDFRRAQQLFDNIPQPDPTTCSTLISAFTTRGLPNEAIRLYASLRARGIKPH 131

Query: 108 NSMVVGLIR----NGELNEARKVFNSMP----IKNVISWNAMIAGYVECCMMGEAIVLFE 159
           NS+ + + +    +G+ +  ++V +       + +    NA+I  Y +C  +  A  +F+
Sbjct: 132 NSVFLTVAKACGASGDASRVKEVHDDAIRCGMMSDAFLGNALIHAYGKCKCVEGARRVFD 191

Query: 160 EMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLL 219
           ++  ++VV+WTSM S Y   G    G  +F  M                WNG    S+ L
Sbjct: 192 DLVVKDVVSWTSMSSCYVNCGLPRLGLAVFCEM---------------GWNGVKPNSVTL 236

Query: 220 ------FIEMKGI----------CDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPV 263
                   E+K +            +G   NV  C+++++ Y R   +++A+ +FD +P 
Sbjct: 237 SSILPACSELKDLKSGRAIHGFAVRHGMIENVFVCSALVSLYARCLSVKQARLVFDLMPH 296

Query: 264 RDEISWTSMIDGYLSVGQVSNAYYLFHNMPDR----DAVAWTAMISGLVQNELFVEATYL 319
           RD +SW  ++  Y +  +      LF  M  +    D   W A+I G ++N    +A  +
Sbjct: 297 RDVVSWNGVLTAYFTNREYDKGLALFSQMSSKGVEADEATWNAVIGGCMENGQTEKAVEM 356

Query: 320 FMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAK 379
             +M+  G  P   T S    A     ++ +G+++HC + +     DL     L+ MYAK
Sbjct: 357 LRKMQNLGFKPNQITISSFLPACSILESLRMGKEVHCYVFRHWLIGDLTTMTALVYMYAK 416

Query: 380 CGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGI 439
           CG ++ + N+F  +  +D+V+WN+M++  + HG   E L +FESML+SG  PNSVTF G+
Sbjct: 417 CGDLNLSRNVFDMICRKDVVAWNTMIIANAMHGNGREVLLLFESMLQSGIKPNSVTFTGV 476

Query: 440 LSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEP 499
           LS CSH+ LV  G ++FN+M   + ++P   HY  M+++  RAG++ EA EF+ R+P EP
Sbjct: 477 LSGCSHSRLVEEGLQIFNSMGRDHLVEPDANHYACMVDVFSRAGRLHEAYEFIQRMPMEP 536

Query: 500 DHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLR 559
               WGALLGAC   + N E+A+ +A +L E++P N   +V L NI   +    E  + R
Sbjct: 537 TASAWGALLGACRVYK-NVELAKISANKLFEIEPNNPGNYVSLFNILVTAKLWSEASEAR 595

Query: 560 MDMGLKGVRKVPGCSWLMRNGGIQMFLSGDK 590
           + M  +G+ K PGCSWL     +  F+ GDK
Sbjct: 596 ILMKERGITKTPGCSWLQVGDRVHTFVVGDK 626



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 105/462 (22%), Positives = 196/462 (42%), Gaps = 56/462 (12%)

Query: 46  NAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMP----E 101
           NA++  + +   +  ARR+F+++  ++VVSWT+M     + G       +F EM     +
Sbjct: 171 NALIHAYGKCKCVEGARRVFDDLVVKDVVSWTSMSSCYVNCGLPRLGLAVFCEMGWNGVK 230

Query: 102 RNVVSWNSMVVGLIRNGELNEARKVFNSMP----IKNVISWNAMIAGYVECCMMGEAIVL 157
            N V+ +S++       +L   R +         I+NV   +A+++ Y  C  + +A ++
Sbjct: 231 PNSVTLSSILPACSELKDLKSGRAIHGFAVRHGMIENVFVCSALVSLYARCLSVKQARLV 290

Query: 158 FEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNV----VSWTAMIGGFAWNGFH 213
           F+ M  R+VV+W  +++ Y    E ++G  LF +M  K V     +W A+IGG   NG  
Sbjct: 291 FDLMPHRDVVSWNGVLTAYFTNREYDKGLALFSQMSSKGVEADEATWNAVIGGCMENGQT 350

Query: 214 KESLLLFIEMKGICDNGNNCNVQS----CNSMINGYIRFGRLEEAQNLFDTVPVRDEISW 269
           ++++ +  +M+ +    N   + S    C+  I   +R G+ E    +F    + D  + 
Sbjct: 351 EKAVEMLRKMQNLGFKPNQITISSFLPACS--ILESLRMGK-EVHCYVFRHWLIGDLTTM 407

Query: 270 TSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVP 329
           T+++  Y   G ++ +  +F  +  +D VAW  MI     +    E   LF  M   G+ 
Sbjct: 408 TALVYMYAKCGDLNLSRNVFDMICRKDVVAWNTMIIANAMHGNGREVLLLFESMLQSGIK 467

Query: 330 PLNATFSVLFGAAGATANIDLGRQIHCVLMKTE-SESDLILENCLISMYAKCGVIDNAYN 388
           P + TF+ +      +  ++ G QI   + +    E D     C++ ++++ G +  AY 
Sbjct: 468 PNSVTFTGVLSGCSHSRLVEEGLQIFNSMGRDHLVEPDANHYACMVDVFSRAGRLHEAYE 527

Query: 389 IFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGL 448
               M                                     P +  +  +L AC     
Sbjct: 528 FIQRM----------------------------------PMEPTASAWGALLGACRVYKN 553

Query: 449 VSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEE 490
           V       N +F++    PG  +YVS+ N+L  A    EA E
Sbjct: 554 VELAKISANKLFEIEPNNPG--NYVSLFNILVTAKLWSEASE 593



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 68/283 (24%), Positives = 134/283 (47%), Gaps = 23/283 (8%)

Query: 41  NVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMP 100
           NV   +A++S + +   + +AR +F+ MP R+VVSW  ++          +   LF +M 
Sbjct: 267 NVFVCSALVSLYARCLSVKQARLVFDLMPHRDVVSWNGVLTAYFTNREYDKGLALFSQMS 326

Query: 101 ERNV----VSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIV 156
            + V     +WN+++ G + NG+  +A ++   M           I+ ++  C + E++ 
Sbjct: 327 SKGVEADEATWNAVIGGCMENGQTEKAVEMLRKMQNLGFKPNQITISSFLPACSILESLR 386

Query: 157 LFEEMEER--------NVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFA 208
           + +E+           ++ T T+++  Y + G++     +F  + RK+VV+W  MI   A
Sbjct: 387 MGKEVHCYVFRHWLIGDLTTMTALVYMYAKCGDLNLSRNVFDMICRKDVVAWNTMIIANA 446

Query: 209 WNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEI- 267
            +G  +E LLLF  M     +G   N  +   +++G      +EE   +F+++  RD + 
Sbjct: 447 MHGNGREVLLLFESM---LQSGIKPNSVTFTGVLSGCSHSRLVEEGLQIFNSMG-RDHLV 502

Query: 268 -----SWTSMIDGYLSVGQVSNAYYLFHNMP-DRDAVAWTAMI 304
                 +  M+D +   G++  AY     MP +  A AW A++
Sbjct: 503 EPDANHYACMVDVFSRAGRLHEAYEFIQRMPMEPTASAWGALL 545



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 76/332 (22%), Positives = 152/332 (45%), Gaps = 24/332 (7%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNV---- 73
           ++ Y++   + +A+ +F LMP R+VVS+N +L+ +  N    +   LF +M  + V    
Sbjct: 275 VSLYARCLSVKQARLVFDLMPHRDVVSWNGVLTAYFTNREYDKGLALFSQMSSKGVEADE 334

Query: 74  VSWTAMICGLADAGRVCEARKLFEEMP----ERNVVSWNSMVVGLIRNGELNEARK---- 125
            +W A+I G  + G+  +A ++  +M     + N ++ +S +        L   ++    
Sbjct: 335 ATWNAVIGGCMENGQTEKAVEMLRKMQNLGFKPNQITISSFLPACSILESLRMGKEVHCY 394

Query: 126 VFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEG 185
           VF    I ++ +  A++  Y +C  +  +  +F+ +  ++VV W +MI      G   E 
Sbjct: 395 VFRHWLIGDLTTMTALVYMYAKCGDLNLSRNVFDMICRKDVVAWNTMIIANAMHGNGREV 454

Query: 186 YCLFRRM----PRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSM 241
             LF  M     + N V++T ++ G + +   +E L +F  M        + N  +C  M
Sbjct: 455 LLLFESMLQSGIKPNSVTFTGVLSGCSHSRLVEEGLQIFNSMGRDHLVEPDANHYAC--M 512

Query: 242 INGYIRFGRLEEAQNLFDTVPVRDEIS-WTSMIDGYLSVGQVS----NAYYLFHNMPDRD 296
           ++ + R GRL EA      +P+    S W +++        V     +A  LF   P+  
Sbjct: 513 VDVFSRAGRLHEAYEFIQRMPMEPTASAWGALLGACRVYKNVELAKISANKLFEIEPNNP 572

Query: 297 AVAWTAMISGLVQNELFVEATYLFMEMRAHGV 328
              + ++ + LV  +L+ EA+   + M+  G+
Sbjct: 573 G-NYVSLFNILVTAKLWSEASEARILMKERGI 603



 Score = 50.1 bits (118), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 36/141 (25%), Positives = 72/141 (51%), Gaps = 10/141 (7%)

Query: 14  LTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPER-- 71
           +T+ +  Y+K G ++ ++ +F ++ +++VV++N M+     +G   E   LFE M +   
Sbjct: 407 MTALVYMYAKCGDLNLSRNVFDMICRKDVVAWNTMIIANAMHGNGREVLLLFESMLQSGI 466

Query: 72  --NVVSWTAMICGLADAGRVCEARKLFEEMPERNVVS-----WNSMVVGLIRNGELNEAR 124
             N V++T ++ G + +  V E  ++F  M   ++V      +  MV    R G L+EA 
Sbjct: 467 KPNSVTFTGVLSGCSHSRLVEEGLQIFNSMGRDHLVEPDANHYACMVDVFSRAGRLHEAY 526

Query: 125 KVFNSMPIKNVIS-WNAMIAG 144
           +    MP++   S W A++  
Sbjct: 527 EFIQRMPMEPTASAWGALLGA 547


>gi|356513929|ref|XP_003525660.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Glycine max]
          Length = 736

 Score =  289 bits (739), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 182/559 (32%), Positives = 294/559 (52%), Gaps = 20/559 (3%)

Query: 58  LSEARRLFEEMPER--NVVSWTAMICGLADAGRVCEARKLFEEMPER----NVVSWNSMV 111
           LS A  LF  +  +  N+  W  +I   +       +  LF +M       N  ++ S+ 
Sbjct: 75  LSYALSLFHSIHHQPPNIFIWNTLIRAHSLTPTPTSSLHLFSQMLHSGLYPNSHTFPSLF 134

Query: 112 VGLIRNGELNEARKVFNSMPIKNVISWN-----AMIAGYVECCMMGEAIVLFEEMEERNV 166
               ++   +EA+++ ++  +K  +  +     ++I  Y +   +  A ++F++   R+ 
Sbjct: 135 KSCAKSKATHEAKQL-HAHALKLALHLHPHVHTSLIHMYSQVGELRHARLVFDKSTLRDA 193

Query: 167 VTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGI 226
           V++T++I+GY   G V++   LF  +P K+VVSW AMI G+  +G  +E+L  F  M+  
Sbjct: 194 VSFTALITGYVSEGHVDDARRLFDEIPAKDVVSWNAMIAGYVQSGRFEEALACFTRMQEA 253

Query: 227 CDNGNNCNVQSCNSMINGYIRFGRLEE--AQNLFDTVPVRDEISWTSMIDGYLSVGQVSN 284
             + N   + S  S   G++R   L +     + D    ++     +++D Y   G++  
Sbjct: 254 DVSPNQSTMVSVLSAC-GHLRSLELGKWIGSWVRDRGFGKNLQLVNALVDMYSKCGEIGT 312

Query: 285 AYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGA 344
           A  LF  M D+D + W  MI G     L+ EA  LF  M    V P + TF  +  A  +
Sbjct: 313 ARKLFDGMEDKDVILWNTMIGGYCHLSLYEEALVLFEVMLRENVTPNDVTFLAVLPACAS 372

Query: 345 TANIDLGRQIHCVLMK----TESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVS 400
              +DLG+ +H  + K    T + +++ L   +I MYAKCG ++ A  +F +M SR L S
Sbjct: 373 LGALDLGKWVHAYIDKNLKGTGNVNNVSLWTSIIVMYAKCGCVEVAEQVFRSMGSRSLAS 432

Query: 401 WNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMF 460
           WN+M+ G + +G A   L +FE M+  G  P+ +TF+G+LSAC+ AG V  G   F++M 
Sbjct: 433 WNAMISGLAMNGHAERALGLFEEMINEGFQPDDITFVGVLSACTQAGFVELGHRYFSSMN 492

Query: 461 DVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEI 520
             Y I P  +HY  MI+LL R+GK  EA+  +  +  EPD  IWG+LL AC    G  E 
Sbjct: 493 KDYGISPKLQHYGCMIDLLARSGKFDEAKVLMGNMEMEPDGAIWGSLLNACRI-HGQVEF 551

Query: 521 AEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNG 580
            E+ A+RL EL+P N+ A+V+L NIYA +GR  +  K+R  +  KG++KVPGC+ +  +G
Sbjct: 552 GEYVAERLFELEPENSGAYVLLSNIYAGAGRWDDVAKIRTKLNDKGMKKVPGCTSIEIDG 611

Query: 581 GIQMFLSGDKIPAQVAEIL 599
            +  FL GDK   Q   I 
Sbjct: 612 VVHEFLVGDKFHPQSENIF 630



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 132/442 (29%), Positives = 200/442 (45%), Gaps = 53/442 (11%)

Query: 6   HPKSLVVHL-----TSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSE 60
           H   L +HL     TS I  YS+ G +  A+ +F     R+ VS+ A+++G++  G + +
Sbjct: 152 HALKLALHLHPHVHTSLIHMYSQVGELRHARLVFDKSTLRDAVSFTALITGYVSEGHVDD 211

Query: 61  ARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVV------GL 114
           ARRLF+E+P ++VVSW AMI G   +GR  EA   F  M E +V    S +V      G 
Sbjct: 212 ARRLFDEIPAKDVVSWNAMIAGYVQSGRFEEALACFTRMQEADVSPNQSTMVSVLSACGH 271

Query: 115 IRNGELNE--ARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSM 172
           +R+ EL +     V +    KN+   NA++  Y +C  +G A  LF+ ME+++V+ W +M
Sbjct: 272 LRSLELGKWIGSWVRDRGFGKNLQLVNALVDMYSKCGEIGTARKLFDGMEDKDVILWNTM 331

Query: 173 ISGYCRAGEVEEGYCLFRRMPRKNV----VSWTAMIGGFAWNGFHK--ESLLLFIEMKGI 226
           I GYC     EE   LF  M R+NV    V++ A++   A  G     + +  +I+ K +
Sbjct: 332 IGGYCHLSLYEEALVLFEVMLRENVTPNDVTFLAVLPACASLGALDLGKWVHAYID-KNL 390

Query: 227 CDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAY 286
              GN  NV    S+I  Y + G +E A+ +F ++  R   SW +M              
Sbjct: 391 KGTGNVNNVSLWTSIIVMYAKCGCVEVAEQVFRSMGSRSLASWNAM-------------- 436

Query: 287 YLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATA 346
                            ISGL  N     A  LF EM   G  P + TF  +  A     
Sbjct: 437 -----------------ISGLAMNGHAERALGLFEEMINEGFQPDDITFVGVLSACTQAG 479

Query: 347 NIDLGRQIHCVLMKTESES-DLILENCLISMYAKCGVIDNAYNIFSNM-VSRDLVSWNSM 404
            ++LG +    + K    S  L    C+I + A+ G  D A  +  NM +  D   W S+
Sbjct: 480 FVELGHRYFSSMNKDYGISPKLQHYGCMIDLLARSGKFDEAKVLMGNMEMEPDGAIWGSL 539

Query: 405 VMGFSHHGLANETLKVFESMLE 426
           +     HG       V E + E
Sbjct: 540 LNACRIHGQVEFGEYVAERLFE 561


>gi|356510758|ref|XP_003524101.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial-like [Glycine max]
          Length = 854

 Score =  289 bits (739), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 166/489 (33%), Positives = 268/489 (54%), Gaps = 15/489 (3%)

Query: 119 ELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIV--------LFEEMEERNVVTWT 170
           +L  A  V +SM  + V + +   +  ++CC+   A+         +F            
Sbjct: 265 DLPSAMHVLDSMERRGVWADSITYSELIKCCLAHGAVREGKRVHRHIFSNGYHPKTFLTN 324

Query: 171 SMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNG 230
            +I+ Y +   +EE   LF +MP +NVVSWT MI  ++    +  ++ L   M     +G
Sbjct: 325 ILINMYVKFNLLEEAQVLFDKMPERNVVSWTTMISAYSNAQLNDRAMRLLAFM---FRDG 381

Query: 231 NNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEI-SWTSMIDGYLSVGQVSNAYYLF 289
              N+ + +S++    R   L++  +    V +  ++   +++ID Y  +G++  A  +F
Sbjct: 382 VMPNMFTFSSVLRACERLYDLKQLHSWIMKVGLESDVFVRSALIDVYSKMGELLEALKVF 441

Query: 290 HNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANID 349
             M   D+V W ++I+   Q+    EA +L+  MR  G P   +T + +  A  + + ++
Sbjct: 442 REMMTGDSVVWNSIIAAFAQHSDGDEALHLYKSMRRVGFPADQSTLTSVLRACTSLSLLE 501

Query: 350 LGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFS 409
           LGRQ H  ++K +   DLIL N L+ MY KCG +++A  IF+ M  +D++SW++M+ G +
Sbjct: 502 LGRQAHVHVLKFDQ--DLILNNALLDMYCKCGSLEDAKFIFNRMAKKDVISWSTMIAGLA 559

Query: 410 HHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGP 469
            +G + E L +FESM   G  PN +T LG+L ACSHAGLV+ GW  F +M ++Y I PG 
Sbjct: 560 QNGFSMEALNLFESMKVQGPKPNHITILGVLFACSHAGLVNEGWYYFRSMNNLYGIDPGR 619

Query: 470 EHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLL 529
           EHY  M++LLGRA K+ +  + +  +  EPD   W  LL AC     N ++A +AAK +L
Sbjct: 620 EHYGCMLDLLGRAEKLDDMVKLIHEMNCEPDVVTWRTLLDACR-ARQNVDLATYAAKEIL 678

Query: 530 ELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGD 589
           +LDP +  A+V+L NIYA S R  +  ++R  M  +G+RK PGCSW+  N  I  F+ GD
Sbjct: 679 KLDPQDTGAYVLLSNIYAISKRWNDVAEVRRTMKKRGIRKEPGCSWIEVNKQIHAFILGD 738

Query: 590 KIPAQVAEI 598
           K   Q+ EI
Sbjct: 739 KSHPQIDEI 747



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 93/369 (25%), Positives = 166/369 (44%), Gaps = 59/369 (15%)

Query: 6   HPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSE-ARRL 64
           HPK+ + ++   I  Y K   ++EA+ LF  MP+RNVVS+  M+S +  N +L++ A RL
Sbjct: 317 HPKTFLTNIL--INMYVKFNLLEEAQVLFDKMPERNVVSWTTMISAY-SNAQLNDRAMRL 373

Query: 65  ----FEE--MP------------------------------ERNVVSWTAMICGLADAGR 88
               F +  MP                              E +V   +A+I   +  G 
Sbjct: 374 LAFMFRDGVMPNMFTFSSVLRACERLYDLKQLHSWIMKVGLESDVFVRSALIDVYSKMGE 433

Query: 89  VCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVEC 148
           + EA K+F EM   + V WNS++    ++ + +EA  ++ SM      +  + +   +  
Sbjct: 434 LLEALKVFREMMTGDSVVWNSIIAAFAQHSDGDEALHLYKSMRRVGFPADQSTLTSVLRA 493

Query: 149 CMMGEAIVLFEEME------ERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTA 202
           C     + L  +        +++++   +++  YC+ G +E+   +F RM +K+V+SW+ 
Sbjct: 494 CTSLSLLELGRQAHVHVLKFDQDLILNNALLDMYCKCGSLEDAKFIFNRMAKKDVISWST 553

Query: 203 MIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQ----SCN--SMIN-GYIRFGRLEEAQ 255
           MI G A NGF  E+L LF  MK      N+  +     +C+   ++N G+  F  +    
Sbjct: 554 MIAGLAQNGFSMEALNLFESMKVQGPKPNHITILGVLFACSHAGLVNEGWYYFRSM---N 610

Query: 256 NLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMP-DRDAVAWTAMISGLVQNELFV 314
           NL+   P R+   +  M+D      ++ +   L H M  + D V W  ++      +   
Sbjct: 611 NLYGIDPGREH--YGCMLDLLGRAEKLDDMVKLIHEMNCEPDVVTWRTLLDACRARQNVD 668

Query: 315 EATYLFMEM 323
            ATY   E+
Sbjct: 669 LATYAAKEI 677


>gi|224065565|ref|XP_002301860.1| predicted protein [Populus trichocarpa]
 gi|222843586|gb|EEE81133.1| predicted protein [Populus trichocarpa]
          Length = 933

 Score =  289 bits (739), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 171/501 (34%), Positives = 270/501 (53%), Gaps = 19/501 (3%)

Query: 108 NSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNV- 166
           N  +  L     ++ A   +  M I NV  +NAMI G+V+     +A+ L+ +M   NV 
Sbjct: 18  NQFISALSTFNRMDYAVLAYTQMEIPNVFVYNAMIKGFVQSYQPVQALELYVQMLRANVS 77

Query: 167 ---VTWTSMISG-----YCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLL 218
               T+ S+I         R  E   G+ ++R     +V   T+++  ++  G  +ES+ 
Sbjct: 78  PTSYTFPSLIKACGLVSQLRFAEAVHGH-VWRNGFDSHVFVQTSLVDFYSSMGRIEESVR 136

Query: 219 LFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLS 278
           +F EM          +V +  +M++G +R G +  A  LFD +P R+  +W ++IDGY  
Sbjct: 137 VFDEMP-------ERDVFAWTTMVSGLVRVGDMSSAGRLFDMMPDRNLATWNTLIDGYAR 189

Query: 279 VGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVL 338
           + +V  A  LF+ MP RD ++WT MI+   QN+ F EA  +F EM  HG+ P   T + +
Sbjct: 190 LREVDVAELLFNQMPARDIISWTTMINCYSQNKRFREALGVFNEMAKHGISPDEVTMATV 249

Query: 339 FGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDL 398
             A      +DLG++IH  +M+     D+ + + LI MYAKCG +D +  +F  +  ++L
Sbjct: 250 ISACAHLGALDLGKEIHYYIMQHGFNLDVYIGSALIDMYAKCGSLDRSLLMFFKLREKNL 309

Query: 399 VSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNA 458
             WNS++ G + HG A E L +F+ M      PN VTF+ +LSAC+HAGL+  G + F +
Sbjct: 310 FCWNSVIEGLAVHGYAEEALAMFDKMEREKIKPNGVTFVSVLSACNHAGLIEEGRKRFAS 369

Query: 459 MFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNA 518
           M   + I PG EHY  M++LL +AG ++EA + +  +  EP+  IWGALL  C     N 
Sbjct: 370 MTRDHSIPPGVEHYGCMVDLLSKAGLLEEALQLIRTMKLEPNAVIWGALLSGCKL-HRNL 428

Query: 519 EIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGV-RKVPGCSWLM 577
           EIA+ AA +L+ L+P N+  + +L N+ A   R  E  K+R+ M  +GV ++ PG SW+ 
Sbjct: 429 EIAQVAANKLMVLEPGNSGYYTLLVNMNAEVNRWGEAAKIRLTMKEQGVEKRCPGSSWIE 488

Query: 578 RNGGIQMFLSGDKIPAQVAEI 598
               +  F + DK  A   EI
Sbjct: 489 MESQVHQFAASDKSHAASDEI 509



 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 95/315 (30%), Positives = 154/315 (48%), Gaps = 13/315 (4%)

Query: 4   RNHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARR 63
           RN   S V   TS +  YS  G I+E+  +F  MP+R+V ++  M+SG ++ G +S A R
Sbjct: 108 RNGFDSHVFVQTSLVDFYSSMGRIEESVRVFDEMPERDVFAWTTMVSGLVRVGDMSSAGR 167

Query: 64  LFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEA 123
           LF+ MP+RN+ +W  +I G A    V  A  LF +MP R+++SW +M+    +N    EA
Sbjct: 168 LFDMMPDRNLATWNTLIDGYARLREVDVAELLFNQMPARDIISWTTMINCYSQNKRFREA 227

Query: 124 RKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEME--------ERNVVTWTSMISG 175
             VFN M    +      +A  +  C    A+ L +E+           +V   +++I  
Sbjct: 228 LGVFNEMAKHGISPDEVTMATVISACAHLGALDLGKEIHYYIMQHGFNLDVYIGSALIDM 287

Query: 176 YCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNV 235
           Y + G ++    +F ++  KN+  W ++I G A +G+ +E+L +F +M+      N    
Sbjct: 288 YAKCGSLDRSLLMFFKLREKNLFCWNSVIEGLAVHGYAEEALAMFDKMEREKIKPNGVTF 347

Query: 236 QSCNSMIN--GYIRFGRLEEAQNLFD-TVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNM 292
            S  S  N  G I  GR   A    D ++P   E  +  M+D     G +  A  L   M
Sbjct: 348 VSVLSACNHAGLIEEGRKRFASMTRDHSIPPGVE-HYGCMVDLLSKAGLLEEALQLIRTM 406

Query: 293 P-DRDAVAWTAMISG 306
             + +AV W A++SG
Sbjct: 407 KLEPNAVIWGALLSG 421



 Score =  128 bits (322), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 97/362 (26%), Positives = 170/362 (46%), Gaps = 53/362 (14%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNV---- 73
           I+  S    +D A   +  M   NV  YNAM+ GF+Q+ +  +A  L+ +M   NV    
Sbjct: 21  ISALSTFNRMDYAVLAYTQMEIPNVFVYNAMIKGFVQSYQPVQALELYVQMLRANVSPTS 80

Query: 74  VSWTAMI--CGL---------------------------------ADAGRVCEARKLFEE 98
            ++ ++I  CGL                                 +  GR+ E+ ++F+E
Sbjct: 81  YTFPSLIKACGLVSQLRFAEAVHGHVWRNGFDSHVFVQTSLVDFYSSMGRIEESVRVFDE 140

Query: 99  MPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLF 158
           MPER+V +W +MV GL+R G+++ A ++F+ MP +N+ +WN +I GY     +  A +LF
Sbjct: 141 MPERDVFAWTTMVSGLVRVGDMSSAGRLFDMMPDRNLATWNTLIDGYARLREVDVAELLF 200

Query: 159 EEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNV----VSWTAMIGGFAWNGFHK 214
            +M  R++++WT+MI+ Y +     E   +F  M +  +    V+   +I   A    H 
Sbjct: 201 NQMPARDIISWTTMINCYSQNKRFREALGVFNEMAKHGISPDEVTMATVISACA----HL 256

Query: 215 ESLLLFIEMK-GICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMI 273
            +L L  E+   I  +G N +V   +++I+ Y + G L+ +  +F  +  ++   W S+I
Sbjct: 257 GALDLGKEIHYYIMQHGFNLDVYIGSALIDMYAKCGSLDRSLLMFFKLREKNLFCWNSVI 316

Query: 274 DGYLSVGQVSNAYYLFHNMPDR----DAVAWTAMISGLVQNELFVEATYLFMEM-RAHGV 328
           +G    G    A  +F  M       + V + +++S      L  E    F  M R H +
Sbjct: 317 EGLAVHGYAEEALAMFDKMEREKIKPNGVTFVSVLSACNHAGLIEEGRKRFASMTRDHSI 376

Query: 329 PP 330
           PP
Sbjct: 377 PP 378



 Score = 48.5 bits (114), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 28/98 (28%), Positives = 50/98 (51%), Gaps = 3/98 (3%)

Query: 354 IHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGL 413
           ++ V++KT +  D  L N  IS  +    +D A   ++ M   ++  +N+M+ GF     
Sbjct: 1   MYAVMVKTNTNQDCYLMNQFISALSTFNRMDYAVLAYTQMEIPNVFVYNAMIKGFVQSYQ 60

Query: 414 ANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSR 451
             + L+++  ML +   P S TF  ++ AC   GLVS+
Sbjct: 61  PVQALELYVQMLRANVSPTSYTFPSLIKAC---GLVSQ 95


>gi|168048332|ref|XP_001776621.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162672066|gb|EDQ58609.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 703

 Score =  289 bits (739), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 180/541 (33%), Positives = 272/541 (50%), Gaps = 47/541 (8%)

Query: 101 ERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEE 160
           E+N    N+++   I  G L EAR VF+++  K+  SWNAMIAGYVE     +A+ LF E
Sbjct: 60  EQNAHVMNNLLHVYIECGRLQEARCVFDALVKKSGASWNAMIAGYVEHKHAEDAMRLFRE 119

Query: 161 M---------------------------------------EERNVVTWTSMISGYCRAGE 181
           M                                        E +V   T+++  Y + G 
Sbjct: 120 MCHEGVQPNAGTYMIILKACASLSALKWGKEVHACIRHGGLESDVRVGTALLRMYGKCGS 179

Query: 182 VEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSM 241
           + E   +F  +   +++SWT MIG +A +G  KE+  L ++M+     G   N  +  S+
Sbjct: 180 INEARRIFDNLMNHDIISWTVMIGAYAQSGNGKEAYRLMLQME---QEGFKPNAITYVSI 236

Query: 242 INGYIRFGRLEEAQNL----FDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDA 297
           +N     G L+  + +     D     D    T+++  Y   G + +A  +F  M  RD 
Sbjct: 237 LNACASEGALKWVKRVHRHALDAGLELDVRVGTALVQMYAKSGSIDDARVVFDRMKVRDV 296

Query: 298 VAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCV 357
           V+W  MI    ++    EA  LF++M+  G  P    F  +  A  +   ++  ++IH  
Sbjct: 297 VSWNVMIGAFAEHGRGHEAYDLFLQMQTEGCKPDAIMFLSILNACASAGALEWVKKIHRH 356

Query: 358 LMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANET 417
            + +  E D+ +   L+ MY+K G ID+A  +F  M  R++VSWN+M+ G + HGL  + 
Sbjct: 357 ALDSGLEVDVRVGTALVHMYSKSGSIDDARVVFDRMKVRNVVSWNAMISGLAQHGLGQDA 416

Query: 418 LKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMIN 477
           L+VF  M   G  P+ VTF+ +LSACSHAGLV  G   + AM  VY I+P   H   M++
Sbjct: 417 LEVFRRMTAHGVKPDRVTFVAVLSACSHAGLVDEGRSQYLAMTQVYGIEPDVSHCNCMVD 476

Query: 478 LLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAP 537
           LLGRAG++ EA+ F+  +  +PD   WGALLG+C    GN E+ E  AK  L+LDP NA 
Sbjct: 477 LLGRAGRLMEAKLFIDNMAVDPDEATWGALLGSC-RTYGNVELGELVAKERLKLDPKNAA 535

Query: 538 AHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAE 597
            +V+L NIYA +G+      +R  M  +G+RK PG SW+  +  I  FL  D    +  E
Sbjct: 536 TYVLLSNIYAEAGKWDMVSWVRTMMRERGIRKEPGRSWIEVDNKIHDFLVADSSHPECKE 595

Query: 598 I 598
           I
Sbjct: 596 I 596



 Score =  145 bits (366), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 117/460 (25%), Positives = 205/460 (44%), Gaps = 63/460 (13%)

Query: 21  YSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMI 80
           Y + G + EA+ +F  + +++  S+NAM++G++++    +A RLF EM    V       
Sbjct: 73  YIECGRLQEARCVFDALVKKSGASWNAMIAGYVEHKHAEDAMRLFREMCHEGVQPNAGTY 132

Query: 81  CGLADAGRVCEARKLFEEMP--------ERNVVSWNSMVVGLIRNGELNEARKVFNSMPI 132
             +  A     A K  +E+         E +V    +++    + G +NEAR++F+++  
Sbjct: 133 MIILKACASLSALKWGKEVHACIRHGGLESDVRVGTALLRMYGKCGSINEARRIFDNLMN 192

Query: 133 KNVISWNAMIAGYVECCMMGEAIVLFEEMEER----NVVTW------------------- 169
            ++ISW  MI  Y +     EA  L  +ME+     N +T+                   
Sbjct: 193 HDIISWTVMIGAYAQSGNGKEAYRLMLQMEQEGFKPNAITYVSILNACASEGALKWVKRV 252

Query: 170 ----------------TSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFH 213
                           T+++  Y ++G +++   +F RM  ++VVSW  MIG FA +G  
Sbjct: 253 HRHALDAGLELDVRVGTALVQMYAKSGSIDDARVVFDRMKVRDVVSWNVMIGAFAEHGRG 312

Query: 214 KESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNL----FDTVPVRDEISW 269
            E+  LF++M+     G   +     S++N     G LE  + +     D+    D    
Sbjct: 313 HEAYDLFLQMQ---TEGCKPDAIMFLSILNACASAGALEWVKKIHRHALDSGLEVDVRVG 369

Query: 270 TSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVP 329
           T+++  Y   G + +A  +F  M  R+ V+W AMISGL Q+ L  +A  +F  M AHGV 
Sbjct: 370 TALVHMYSKSGSIDDARVVFDRMKVRNVVSWNAMISGLAQHGLGQDALEVFRRMTAHGVK 429

Query: 330 PLNATFSVLFGAAGATANIDLGRQIHCVLMKTES-ESDLILENCLISMYAKCGVIDNAYN 388
           P   TF  +  A      +D GR  +  + +    E D+   NC++ +  + G +  A  
Sbjct: 430 PDRVTFVAVLSACSHAGLVDEGRSQYLAMTQVYGIEPDVSHCNCMVDLLGRAGRLMEAKL 489

Query: 389 IFSNM-VSRDLVSWNSMVMGFSHHG-------LANETLKV 420
              NM V  D  +W +++     +G       +A E LK+
Sbjct: 490 FIDNMAVDPDEATWGALLGSCRTYGNVELGELVAKERLKL 529



 Score =  102 bits (253), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 77/281 (27%), Positives = 135/281 (48%), Gaps = 46/281 (16%)

Query: 15  TSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPER--- 71
           T+ +  Y+K G ID+A+ +F  M  R+VVS+N M+  F ++GR  EA  LF +M      
Sbjct: 269 TALVQMYAKSGSIDDARVVFDRMKVRDVVSWNVMIGAFAEHGRGHEAYDLFLQMQTEGCK 328

Query: 72  -NVVSWTAMICGLADAGRVCEARKL----FEEMPERNVVSWNSMVVGLIRNGELNEARKV 126
            + + + +++   A AG +   +K+     +   E +V    ++V    ++G +++AR V
Sbjct: 329 PDAIMFLSILNACASAGALEWVKKIHRHALDSGLEVDVRVGTALVHMYSKSGSIDDARVV 388

Query: 127 FNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNV----VTWTSMISGYCRAGEV 182
           F+ M ++NV+SWNAMI+G  +  +  +A+ +F  M    V    VT+ +++S    AG V
Sbjct: 389 FDRMKVRNVVSWNAMISGLAQHGLGQDALEVFRRMTAHGVKPDRVTFVAVLSACSHAGLV 448

Query: 183 EEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMI 242
           +EG                            +   L   ++ GI       +V  CN M+
Sbjct: 449 DEG----------------------------RSQYLAMTQVYGI-----EPDVSHCNCMV 475

Query: 243 NGYIRFGRLEEAQNLFDTVPVR-DEISWTSMIDGYLSVGQV 282
           +   R GRL EA+   D + V  DE +W +++    + G V
Sbjct: 476 DLLGRAGRLMEAKLFIDNMAVDPDEATWGALLGSCRTYGNV 516



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 58/183 (31%), Positives = 93/183 (50%), Gaps = 19/183 (10%)

Query: 15  TSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNV- 73
           T+ +  YSK G ID+A+ +F  M  RNVVS+NAM+SG  Q+G   +A  +F  M    V 
Sbjct: 370 TALVHMYSKSGSIDDARVVFDRMKVRNVVSWNAMISGLAQHGLGQDALEVFRRMTAHGVK 429

Query: 74  ---VSWTAMICGLADAGRVCEARKLFEEMP-----ERNVVSWNSMVVGLIRNGELNEARK 125
              V++ A++   + AG V E R  +  M      E +V   N MV  L R G L EA+ 
Sbjct: 430 PDRVTFVAVLSACSHAGLVDEGRSQYLAMTQVYGIEPDVSHCNCMVDLLGRAGRLMEAKL 489

Query: 126 VFNSMPIK-NVISWNAMIA-----GYVECCMMGEAIVLFE-EMEERNVVTWTSMISGYCR 178
             ++M +  +  +W A++      G VE   +GE +     +++ +N  T+  + + Y  
Sbjct: 490 FIDNMAVDPDEATWGALLGSCRTYGNVE---LGELVAKERLKLDPKNAATYVLLSNIYAE 546

Query: 179 AGE 181
           AG+
Sbjct: 547 AGK 549


>gi|302783655|ref|XP_002973600.1| hypothetical protein SELMODRAFT_99651 [Selaginella moellendorffii]
 gi|300158638|gb|EFJ25260.1| hypothetical protein SELMODRAFT_99651 [Selaginella moellendorffii]
          Length = 536

 Score =  289 bits (739), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 163/504 (32%), Positives = 270/504 (53%), Gaps = 21/504 (4%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWT 77
           +  Y   G ++EAKA+F+ +  RNV S+N ML  + QNG     R+ F++MP  +VVSW+
Sbjct: 4   VQMYGACGCVEEAKAVFEGIHGRNVFSWNLMLLAYAQNGYFLGGRKAFDQMPSWDVVSWS 63

Query: 78  AMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARK---VFNSMPIKN 134
            ++      G +  A+  F+ MP+R ++SWN+++    RNG++++ +    +F+ MP  N
Sbjct: 64  TLVTFFCQTGDIHSAKNAFDCMPQRELLSWNTLLAANARNGQIHDVQGMFWIFHRMPQHN 123

Query: 135 VISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGE-VEEGYCLFRRMP 193
           +++WN M++G+ +   +  A ++FE +  R+ V+W +M+S Y   G  +EE   LF R+P
Sbjct: 124 LVTWNVMLSGFAQNGKVDNAKLMFESLPARDTVSWNTMMSSYSATGGFLEESRDLFFRIP 183

Query: 194 RKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEE 253
           R+++VSW +M+     N     S  +F  M          +V S   +I  YI   R+ E
Sbjct: 184 RRDLVSWNSMLVALVLNDDLAGSRTVFDLMP-------RRDVVSWKILIQAYIHNSRMAE 236

Query: 254 AQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELF 313
           AQ + +++      SW  ++ GY     +  A  LF  + +RDA++W++++   V   L 
Sbjct: 237 AQGVVESMVDPSVESWNILLHGYGQNRNLEEAKLLFDKLHERDAMSWSSILCAYVAAGLG 296

Query: 314 VEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKT---ESESDLI-- 368
            EA   F EM   G  P       +  A G+     LG   HC ++ +   E+  D +  
Sbjct: 297 AEALMTFREMDLEGFRPSTKCLVAVLDACGSL----LGDFAHCKIVHSSIAEAGLDRLKG 352

Query: 369 LENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESG 428
           +E  +ISMY++CG +  A  IF          W+SM+ G++ +G A E L +F  ML  G
Sbjct: 353 VETSIISMYSRCGSLRVAREIFDKRPQELRARWSSMIAGYAQNGHAREALDLFRQMLLDG 412

Query: 429 THPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEA 488
             PNS+T + I+SACSH G +  G   F ++   + I    + Y  ++++LGRAG + EA
Sbjct: 413 VEPNSITLVSIISACSHTGALGDGLRCFGSLRQDFNIVASDDIYKCVVDVLGRAGMLSEA 472

Query: 489 EEFV-LRLPFEPDHRIWGALLGAC 511
           EEF+   +PFE D   W +LLG+C
Sbjct: 473 EEFISAMMPFEADSCTWMSLLGSC 496



 Score =  187 bits (476), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 130/452 (28%), Positives = 225/452 (49%), Gaps = 22/452 (4%)

Query: 7   PKSLVVHLTSSITKYSKRGFIDEAKALFQL---MPQRNVVSYNAMLSGFLQNGRLSEARR 63
           P+  ++   + +   ++ G I + + +F +   MPQ N+V++N MLSGF QNG++  A+ 
Sbjct: 86  PQRELLSWNTLLAANARNGQIHDVQGMFWIFHRMPQHNLVTWNVMLSGFAQNGKVDNAKL 145

Query: 64  LFEEMPERNVVSWTAMICGL-ADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNE 122
           +FE +P R+ VSW  M+    A  G + E+R LF  +P R++VSWNSM+V L+ N +L  
Sbjct: 146 MFESLPARDTVSWNTMMSSYSATGGFLEESRDLFFRIPRRDLVSWNSMLVALVLNDDLAG 205

Query: 123 ARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEV 182
           +R VF+ MP ++V+SW  +I  Y+    M EA  + E M + +V +W  ++ GY +   +
Sbjct: 206 SRTVFDLMPRRDVVSWKILIQAYIHNSRMAEAQGVVESMVDPSVESWNILLHGYGQNRNL 265

Query: 183 EEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEM--KGICDNGNNCNV---QS 237
           EE   LF ++  ++ +SW++++  +   G   E+L+ F EM  +G       C V    +
Sbjct: 266 EEAKLLFDKLHERDAMSWSSILCAYVAAGLGAEALMTFREMDLEGF-RPSTKCLVAVLDA 324

Query: 238 CNSMINGYIRFGRLEE--AQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDR 295
           C S++  +     +    A+   D +   +    TS+I  Y   G +  A  +F   P  
Sbjct: 325 CGSLLGDFAHCKIVHSSIAEAGLDRLKGVE----TSIISMYSRCGSLRVAREIFDKRPQE 380

Query: 296 DAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIH 355
               W++MI+G  QN    EA  LF +M   GV P + T   +  A   T  +  G +  
Sbjct: 381 LRARWSSMIAGYAQNGHAREALDLFRQMLLDGVEPNSITLVSIISACSHTGALGDGLRCF 440

Query: 356 CVLMKTES--ESDLILENCLISMYAKCGVIDNAYNIFSNMV--SRDLVSWNSMVMGFSHH 411
             L +  +   SD I + C++ +  + G++  A    S M+    D  +W S++     H
Sbjct: 441 GSLRQDFNIVASDDIYK-CVVDVLGRAGMLSEAEEFISAMMPFEADSCTWMSLLGSCRSH 499

Query: 412 GLANETLKVFESMLESGTHPNSVTFLGILSAC 443
           G      K+     E+ + P S TF+ + + C
Sbjct: 500 GDVRRGQKIAAMEFEAWS-PTSSTFVLLSNLC 530



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 115/448 (25%), Positives = 202/448 (45%), Gaps = 60/448 (13%)

Query: 139 NAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVV 198
           N ++  Y  C  + EA  +FE +  RNV +W  M+  Y + G    G   F +MP  +VV
Sbjct: 1   NLLVQMYGACGCVEEAKAVFEGIHGRNVFSWNLMLLAYAQNGYFLGGRKAFDQMPSWDVV 60

Query: 199 SWTAMIGGF--------AWNGF----HKESLLLFIEMKGICDNGNNCNVQ---------- 236
           SW+ ++  F        A N F     +E L     +     NG   +VQ          
Sbjct: 61  SWSTLVTFFCQTGDIHSAKNAFDCMPQRELLSWNTLLAANARNGQIHDVQGMFWIFHRMP 120

Query: 237 -----SCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQ-VSNAYYLFH 290
                + N M++G+ + G+++ A+ +F+++P RD +SW +M+  Y + G  +  +  LF 
Sbjct: 121 QHNLVTWNVMLSGFAQNGKVDNAKLMFESLPARDTVSWNTMMSSYSATGGFLEESRDLFF 180

Query: 291 NMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDL 350
            +P RD V+W +M+  LV N+    +  +F  M    V     ++ +L  A    + +  
Sbjct: 181 RIPRRDLVSWNSMLVALVLNDDLAGSRTVFDLMPRRDV----VSWKILIQAYIHNSRMAE 236

Query: 351 GRQIHCVLMKTESESDLILE--NCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGF 408
            + +       ES  D  +E  N L+  Y +   ++ A  +F  +  RD +SW+S++  +
Sbjct: 237 AQGV------VESMVDPSVESWNILLHGYGQNRNLEEAKLLFDKLHERDAMSWSSILCAY 290

Query: 409 SHHGLANETLKVFESMLESGTHPNSVTFLGILSAC-------SHAGLVSRGWELFNAMFD 461
              GL  E L  F  M   G  P++   + +L AC       +H  +V     +  A  D
Sbjct: 291 VAAGLGAEALMTFREMDLEGFRPSTKCLVAVLDACGSLLGDFAHCKIVHS--SIAEAGLD 348

Query: 462 VYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCE-GNAEI 520
             K   G E   S+I++  R G ++ A E   + P E   R W +++   G+ + G+A  
Sbjct: 349 RLK---GVE--TSIISMYSRCGSLRVAREIFDKRPQELRAR-WSSMIA--GYAQNGHARE 400

Query: 521 AEHAAKRLLELDPLNAPAHVVLCNIYAA 548
           A    +++L LD +  P  + L +I +A
Sbjct: 401 ALDLFRQML-LDGVE-PNSITLVSIISA 426


>gi|224080303|ref|XP_002306089.1| predicted protein [Populus trichocarpa]
 gi|222849053|gb|EEE86600.1| predicted protein [Populus trichocarpa]
          Length = 677

 Score =  288 bits (738), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 197/643 (30%), Positives = 321/643 (49%), Gaps = 68/643 (10%)

Query: 11  VVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPE 70
           +VHL      YSK   I+EA+ LF  MPQRN  S+N ++S  +++  L++A+ +F+    
Sbjct: 29  LVHL------YSKHCLINEAQKLFDEMPQRNTYSWNTIISAHIKSQNLAQAKSIFDSASV 82

Query: 71  RNVVSWTAMICGLADA-GRVCEARKLFEEMPE-RNVVSWNSMVVGLIRNGELNEARKVFN 128
           R++V++ +M+ G     G    A +LF EM   RN +  + + +       +N   K+ N
Sbjct: 83  RDLVTYNSMLSGYVSVDGYERNALELFVEMQSIRNEIEIDDLTI----TSMVNLFSKLCN 138

Query: 129 SMPIKNVISW-------------NAMIAGYVECCMMGEAIVLFEEMEER---NVVTWTSM 172
           S   + + S+             +++I  Y +C    EA  +F+  E     ++V+  +M
Sbjct: 139 SCYGRQLHSYMVKTGNDRSGFVVSSLIDMYSKCGCFKEACQVFKGCEREGGFDLVSKNAM 198

Query: 173 ISGYCRAGEVEEGYCLFRRMPRKN-VVSWTAMIGGFAWNGFHKESLLLFI---------- 221
           ++ YCR G++E    LF R    N  VSW  +I G+  NG+  E+L LF+          
Sbjct: 199 VAAYCREGDMEMALRLFWRESELNDSVSWNTLISGYVQNGYPVEALKLFVCMGENGVKWN 258

Query: 222 ---------------------EMKG-ICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFD 259
                                EM   I  NG   +    + +++ Y + G ++ A++L  
Sbjct: 259 EHTFGSVLSACADLRNLKIGKEMHAWILKNGLGSSAFVESGIVDVYCKCGNMKYAESLLL 318

Query: 260 TVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLV---QNELFVEA 316
           T  VR   S TSMI G+ S G +  A  LF ++ +++++ W A+ SG V   Q E F E 
Sbjct: 319 TRGVRSSFSITSMIVGFSSQGNMVEACRLFDSLEEKNSIVWAALFSGYVKLKQCEAFFEL 378

Query: 317 TYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISM 376
              ++   A  +P      S  F      A +  G+QIH  + +   E D+     +I M
Sbjct: 379 LREYIAKEA-AIPDALILISA-FNVCAFQAALGPGKQIHGYVFRMGIEMDMKTTTAMIDM 436

Query: 377 YAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTF 436
           Y+KCG I  A  +F  ++ RDLV +N M+ G++HHG   + + +F+ MLE G  P++VTF
Sbjct: 437 YSKCGSIPYAEKLFLKVIERDLVLYNVMLAGYAHHGHEIKAINLFQEMLERGVGPDAVTF 496

Query: 437 LGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLP 496
           + +LSAC H GLV  G + F +M + Y I P  +HY  MI+L GRA ++++   F+ R+P
Sbjct: 497 VALLSACRHRGLVDLGEKTFYSMTEDYHILPETDHYACMIDLYGRASQLEKMVLFMQRIP 556

Query: 497 FE-PDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEE 555
            E  D  + GA   AC     N E+A+ A ++LL ++  +   +V L N+YAA G   E 
Sbjct: 557 MEHQDAAVVGAFFNACRL-NNNTELAKEAEEKLLNIEGDSGARYVQLANVYAAEGNWAEM 615

Query: 556 HKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
            ++R +M  K  +K  GCSW+  +  +  F SGD+   +   I
Sbjct: 616 GRIRREMRGKEAKKFAGCSWVYLDNEVHSFTSGDRTHTKAESI 658



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 124/484 (25%), Positives = 220/484 (45%), Gaps = 37/484 (7%)

Query: 104 VVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEE 163
           +++ N +V    ++  +NEA+K+F+ MP +N  SWN +I+ +++   + +A  +F+    
Sbjct: 23  ILTSNQLVHLYSKHCLINEAQKLFDEMPQRNTYSWNTIISAHIKSQNLAQAKSIFDSASV 82

Query: 164 RNVVTWTSMISGYCRAGEVEEGYC-LFRRMP--RKNV----VSWTAMIGGFA--WNGFHK 214
           R++VT+ SM+SGY      E     LF  M   R  +    ++ T+M+  F+   N  + 
Sbjct: 83  RDLVTYNSMLSGYVSVDGYERNALELFVEMQSIRNEIEIDDLTITSMVNLFSKLCNSCYG 142

Query: 215 ESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVR---DEISWTS 271
             L  +     +   GN+ +    +S+I+ Y + G  +EA  +F         D +S  +
Sbjct: 143 RQLHSY-----MVKTGNDRSGFVVSSLIDMYSKCGCFKEACQVFKGCEREGGFDLVSKNA 197

Query: 272 MIDGYLSVGQVSNAYYLFHNMPD-RDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPP 330
           M+  Y   G +  A  LF    +  D+V+W  +ISG VQN   VEA  LF+ M  +GV  
Sbjct: 198 MVAAYCREGDMEMALRLFWRESELNDSVSWNTLISGYVQNGYPVEALKLFVCMGENGVKW 257

Query: 331 LNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIF 390
              TF  +  A     N+ +G+++H  ++K    S   +E+ ++ +Y KCG +  A ++ 
Sbjct: 258 NEHTFGSVLSACADLRNLKIGKEMHAWILKNGLGSSAFVESGIVDVYCKCGNMKYAESLL 317

Query: 391 SNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVS 450
                R   S  SM++GFS  G   E  ++F+S+ E     NS+ +  + S         
Sbjct: 318 LTRGVRSSFSITSMIVGFSSQGNMVEACRLFDSLEE----KNSIVWAALFSGYVKLKQCE 373

Query: 451 RGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKI---KEAEEFVLRLPFEPDHRIWGAL 507
             +EL           P     +S  N+      +   K+   +V R+  E D +   A+
Sbjct: 374 AFFELLREYIAKEAAIPDALILISAFNVCAFQAALGPGKQIHGYVFRMGIEMDMKTTTAM 433

Query: 508 LGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNI----YAASGRHVEEHKLRMDMG 563
           +     C G+   AE    +++E D       +VL N+    YA  G  ++   L  +M 
Sbjct: 434 IDMYSKC-GSIPYAEKLFLKVIERD-------LVLYNVMLAGYAHHGHEIKAINLFQEML 485

Query: 564 LKGV 567
            +GV
Sbjct: 486 ERGV 489


>gi|347954530|gb|AEP33765.1| organelle transcript processing 82, partial [Lepidium sativum]
          Length = 672

 Score =  288 bits (738), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 187/559 (33%), Positives = 289/559 (51%), Gaps = 26/559 (4%)

Query: 58  LSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPE----RNVVSWNSMVVG 113
           LS A  +FE + E N++ W  M  G A       A KL+  M       N  S+  ++  
Sbjct: 15  LSYAISIFETIQEPNLLIWNTMFRGHALNSDSVTALKLYVCMISLGLLPNSYSFPFLLKS 74

Query: 114 LIRNGELNEARKVFNSMPIK-----NVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVT 168
             ++  L E +++   + +K     ++    ++I+ Y +   + +A  +F+    R+VV+
Sbjct: 75  CAKSKALIEGQQIHGHV-LKLGYDLDMYVNTSLISMYAQNGRLEDAHKVFDRSSHRHVVS 133

Query: 169 WTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGI-- 226
           +T++I+GY   G +     LF  +  K+VVSW AMI G+      KE+L L+ +M     
Sbjct: 134 YTALITGYASRGYINNARKLFDEISVKDVVSWNAMISGYVETCNFKEALELYKDMMKTNV 193

Query: 227 -CDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTS-MIDGYLSVGQVSN 284
             D      V S  +  +G I  GR  +  +  +       I   + +ID Y   G+V  
Sbjct: 194 KPDESTMVTVVSACAQ-SGSIELGR--QLHSWIEDHGFGSNIKIVNVLIDLYSKCGEVET 250

Query: 285 AYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGA 344
           A  LF  +  +D ++W  +I G     L+ EA  LF EM   G  P + T   +  A   
Sbjct: 251 ACGLFQGLAKKDVISWNTLIGGHTHMNLYKEALLLFQEMLRSGESPNDVTMLSVLPACAH 310

Query: 345 TANIDLGRQIHCVLMK-----TESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLV 399
              ID+GR IH  + K     T + S   L   LI MYAKCG I+ A  +F +M++R L 
Sbjct: 311 LGAIDIGRWIHVYINKRLKGVTNASS---LLTSLIDMYAKCGDIEAAKQVFDSMLTRSLS 367

Query: 400 SWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAM 459
           SWN+M+ GF+ HG AN    +F  M ++G  P+ +TF+G+LSACSH+G++  G  +F +M
Sbjct: 368 SWNAMIFGFAMHGKANAAFDLFSKMRKNGIDPDDITFVGLLSACSHSGMLDLGRHIFRSM 427

Query: 460 FDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAE 519
              YKI P  EHY  MI+LLG  G  KEA+E +  +P EPD  IW +LL AC     N E
Sbjct: 428 SQDYKITPKLEHYGCMIDLLGHCGLFKEAKEMIRTMPMEPDGVIWCSLLKACKM-HNNVE 486

Query: 520 IAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRN 579
           + E  A+ L++++P N  ++V+L NIYA +GR  +  K+R  +  KG++K PGCS +  +
Sbjct: 487 LGESYAQNLIKIEPENPGSYVLLSNIYATAGRWDQVAKIRTLLNDKGIKKAPGCSSIEID 546

Query: 580 GGIQMFLSGDKIPAQVAEI 598
             +  F+ GDK   +  EI
Sbjct: 547 SVVHEFIIGDKFHPRNREI 565



 Score =  166 bits (419), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 118/382 (30%), Positives = 184/382 (48%), Gaps = 19/382 (4%)

Query: 46  NAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVV 105
            +++S + QNGRL +A ++F+    R+VVS+TA+I G A  G +  ARKLF+E+  ++VV
Sbjct: 104 TSLISMYAQNGRLEDAHKVFDRSSHRHVVSYTALITGYASRGYINNARKLFDEISVKDVV 163

Query: 106 SWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEE-- 163
           SWN+M+ G +      EA +++  M   NV    + +   V  C    +I L  ++    
Sbjct: 164 SWNAMISGYVETCNFKEALELYKDMMKTNVKPDESTMVTVVSACAQSGSIELGRQLHSWI 223

Query: 164 ------RNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESL 217
                  N+     +I  Y + GEVE    LF+ + +K+V+SW  +IGG      +KE+L
Sbjct: 224 EDHGFGSNIKIVNVLIDLYSKCGEVETACGLFQGLAKKDVISWNTLIGGHTHMNLYKEAL 283

Query: 218 LLFIEMKGICDNGNNCNVQS----CNSMINGYIRFGRLEEAQNLFDTVPVRDEIS-WTSM 272
           LLF EM    ++ N+  + S    C  +  G I  GR            V +  S  TS+
Sbjct: 284 LLFQEMLRSGESPNDVTMLSVLPACAHL--GAIDIGRWIHVYINKRLKGVTNASSLLTSL 341

Query: 273 IDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLN 332
           ID Y   G +  A  +F +M  R   +W AMI G   +     A  LF +MR +G+ P +
Sbjct: 342 IDMYAKCGDIEAAKQVFDSMLTRSLSSWNAMIFGFAMHGKANAAFDLFSKMRKNGIDPDD 401

Query: 333 ATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILEN--CLISMYAKCGVIDNAYNIF 390
            TF  L  A   +  +DLGR I    M  + +    LE+  C+I +   CG+   A  + 
Sbjct: 402 ITFVGLLSACSHSGMLDLGRHIFRS-MSQDYKITPKLEHYGCMIDLLGHCGLFKEAKEMI 460

Query: 391 SNM-VSRDLVSWNSMVMGFSHH 411
             M +  D V W S++     H
Sbjct: 461 RTMPMEPDGVIWCSLLKACKMH 482



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 95/378 (25%), Positives = 166/378 (43%), Gaps = 89/378 (23%)

Query: 15  TSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVV 74
           TS I+ Y++ G +++A  +F     R+VVSY A+++G+   G ++ AR+LF+E+  ++VV
Sbjct: 104 TSLISMYAQNGRLEDAHKVFDRSSHRHVVSYTALITGYASRGYINNARKLFDEISVKDVV 163

Query: 75  SWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLI------------------- 115
           SW AMI G  +     EA +L+++M + NV    S +V ++                   
Sbjct: 164 SWNAMISGYVETCNFKEALELYKDMMKTNVKPDESTMVTVVSACAQSGSIELGRQLHSWI 223

Query: 116 --------------------RNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAI 155
                               + GE+  A  +F  +  K+VISWN +I G+    +  EA+
Sbjct: 224 EDHGFGSNIKIVNVLIDLYSKCGEVETACGLFQGLAKKDVISWNTLIGGHTHMNLYKEAL 283

Query: 156 VLFEEM----EERNVVT------------------W-------------------TSMIS 174
           +LF+EM    E  N VT                  W                   TS+I 
Sbjct: 284 LLFQEMLRSGESPNDVTMLSVLPACAHLGAIDIGRWIHVYINKRLKGVTNASSLLTSLID 343

Query: 175 GYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCN 234
            Y + G++E    +F  M  +++ SW AMI GFA +G    +  LF +M+    NG + +
Sbjct: 344 MYAKCGDIEAAKQVFDSMLTRSLSSWNAMIFGFAMHGKANAAFDLFSKMR---KNGIDPD 400

Query: 235 VQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEIS-----WTSMIDGYLSVGQVSNAYYLF 289
             +   +++     G L+  +++F ++    +I+     +  MID     G    A  + 
Sbjct: 401 DITFVGLLSACSHSGMLDLGRHIFRSMSQDYKITPKLEHYGCMIDLLGHCGLFKEAKEMI 460

Query: 290 HNMP-DRDAVAWTAMISG 306
             MP + D V W +++  
Sbjct: 461 RTMPMEPDGVIWCSLLKA 478


>gi|15228117|ref|NP_181268.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75216848|sp|Q9ZUT5.1|PP191_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g37310
 gi|4056485|gb|AAC98051.1| hypothetical protein [Arabidopsis thaliana]
 gi|110741249|dbj|BAF02175.1| hypothetical protein [Arabidopsis thaliana]
 gi|330254288|gb|AEC09382.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 657

 Score =  288 bits (738), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 176/583 (30%), Positives = 295/583 (50%), Gaps = 35/583 (6%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWT 77
           I+ Y+++    +A  +F  +  RN  SYNA+L  +       +A  LF        +SW 
Sbjct: 64  ISFYTRQDRFRQALHVFDEITVRNAFSYNALLIAYTSREMYFDAFSLF--------LSWI 115

Query: 78  AMICGLADAGR-----VCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPI 132
              C  +DA R     +    K      +  + S    V G +  G  +           
Sbjct: 116 GSSCYSSDAARPDSISISCVLKALSGCDDFWLGSLARQVHGFVIRGGFD----------- 164

Query: 133 KNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRM 192
            +V   N MI  Y +C  +  A  +F+EM ER+VV+W SMISGY ++G  E+   +++ M
Sbjct: 165 SDVFVGNGMITYYTKCDNIESARKVFDEMSERDVVSWNSMISGYSQSGSFEDCKKMYKAM 224

Query: 193 P-----RKNVVSWTAMIGGFAWNGFHKESLLLFIEM-KGICDNGNNCNVQSCNSMINGYI 246
                 + N V+   +I  F   G     L+  +E+ K + +N    ++  CN++I  Y 
Sbjct: 225 LACSDFKPNGVT---VISVFQACG-QSSDLIFGLEVHKKMIENHIQMDLSLCNAVIGFYA 280

Query: 247 RFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISG 306
           + G L+ A+ LFD +  +D +++ ++I GY++ G V  A  LF  M       W AMISG
Sbjct: 281 KCGSLDYARALFDEMSEKDSVTYGAIISGYMAHGLVKEAMALFSEMESIGLSTWNAMISG 340

Query: 307 LVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESD 366
           L+QN    E    F EM   G  P   T S L  +   ++N+  G++IH   ++  ++++
Sbjct: 341 LMQNNHHEEVINSFREMIRCGSRPNTVTLSSLLPSLTYSSNLKGGKEIHAFAIRNGADNN 400

Query: 367 LILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLE 426
           + +   +I  YAK G +  A  +F N   R L++W +++  ++ HG ++    +F+ M  
Sbjct: 401 IYVTTSIIDNYAKLGFLLGAQRVFDNCKDRSLIAWTAIITAYAVHGDSDSACSLFDQMQC 460

Query: 427 SGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIK 486
            GT P+ VT   +LSA +H+G       +F++M   Y I+PG EHY  M+++L RAGK+ 
Sbjct: 461 LGTKPDDVTLTAVLSAFAHSGDSDMAQHIFDSMLTKYDIEPGVEHYACMVSVLSRAGKLS 520

Query: 487 EAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIY 546
           +A EF+ ++P +P  ++WGALL       G+ EIA  A  RL E++P N   + ++ N+Y
Sbjct: 521 DAMEFISKMPIDPIAKVWGALLNGASVL-GDLEIARFACDRLFEMEPENTGNYTIMANLY 579

Query: 547 AASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGD 589
             +GR  E   +R  M   G++K+PG SW+    G++ F++ D
Sbjct: 580 TQAGRWEEAEMVRNKMKRIGLKKIPGTSWIETEKGLRSFIAKD 622



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 82/385 (21%), Positives = 155/385 (40%), Gaps = 94/385 (24%)

Query: 123 ARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEV 182
           AR V  S+   N ++ + +I+ Y       +A+ +F+E+  RN  ++ +++  Y      
Sbjct: 46  ARIVVFSIKPDNFLA-SKLISFYTRQDRFRQALHVFDEITVRNAFSYNALLIAYTSREMY 104

Query: 183 EEGYCLFRRMPRKNVVSWTAMIGG--FAWNGFHKESLLLFIEMKGI--CDN--------- 229
            + + LF        +SW   IG   ++ +    +S+ +   +K +  CD+         
Sbjct: 105 FDAFSLF--------LSW---IGSSCYSSDAARPDSISISCVLKALSGCDDFWLGSLARQ 153

Query: 230 --------GNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQ 281
                   G + +V   N MI  Y +   +E A+ +FD +  RD +SW SMI GY   G 
Sbjct: 154 VHGFVIRGGFDSDVFVGNGMITYYTKCDNIESARKVFDEMSERDVVSWNSMISGYSQSGS 213

Query: 282 VSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGA 341
             +   ++  M                              +      P   T   +F A
Sbjct: 214 FEDCKKMYKAM------------------------------LACSDFKPNGVTVISVFQA 243

Query: 342 AGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSW 401
            G ++++  G ++H  +++   + DL L N +I  YAKCG +D A  +F  M  +D V++
Sbjct: 244 CGQSSDLIFGLEVHKKMIENHIQMDLSLCNAVIGFYAKCGSLDYARALFDEMSEKDSVTY 303

Query: 402 NSMVMGFSHHGLANETLKV-------------------------------FESMLESGTH 430
            +++ G+  HGL  E + +                               F  M+  G+ 
Sbjct: 304 GAIISGYMAHGLVKEAMALFSEMESIGLSTWNAMISGLMQNNHHEEVINSFREMIRCGSR 363

Query: 431 PNSVTFLGILSACSHAGLVSRGWEL 455
           PN+VT   +L + +++  +  G E+
Sbjct: 364 PNTVTLSSLLPSLTYSSNLKGGKEI 388



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 57/207 (27%), Positives = 101/207 (48%), Gaps = 19/207 (9%)

Query: 4   RNHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARR 63
           RN   + +   TS I  Y+K GF+  A+ +F     R+++++ A+++ +  +G    A  
Sbjct: 394 RNGADNNIYVTTSIIDNYAKLGFLLGAQRVFDNCKDRSLIAWTAIITAYAVHGDSDSACS 453

Query: 64  LFEEM----PERNVVSWTAMICGLADAGRVCEARKLFEEM-----PERNVVSWNSMVVGL 114
           LF++M     + + V+ TA++   A +G    A+ +F+ M      E  V  +  MV  L
Sbjct: 454 LFDQMQCLGTKPDDVTLTAVLSAFAHSGDSDMAQHIFDSMLTKYDIEPGVEHYACMVSVL 513

Query: 115 IRNGELNEARKVFNSMPIKNVIS-WNAMIAGYVECCMMGE-AIVLFE-----EMEERNVV 167
            R G+L++A +  + MPI  +   W A++ G     ++G+  I  F      EME  N  
Sbjct: 514 SRAGKLSDAMEFISKMPIDPIAKVWGALLNG---ASVLGDLEIARFACDRLFEMEPENTG 570

Query: 168 TWTSMISGYCRAGEVEEGYCLFRRMPR 194
            +T M + Y +AG  EE   +  +M R
Sbjct: 571 NYTIMANLYTQAGRWEEAEMVRNKMKR 597


>gi|255559863|ref|XP_002520950.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223539787|gb|EEF41367.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 835

 Score =  288 bits (738), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 186/643 (28%), Positives = 323/643 (50%), Gaps = 59/643 (9%)

Query: 9   SLVVHLTSSITKYSKRGFIDEAKALFQLMPQRN-VVSYNAMLSGFLQNGRLSEARRLFEE 67
           S V  + S +  Y+K   I+ A+ LF  M  RN VVS+N+++S +  NG  +EA  LF E
Sbjct: 91  SFVFVVNSLVALYAKCNDINGARKLFDRMYVRNDVVSWNSIISAYSGNGMCTEALCLFSE 150

Query: 68  MPERNVVSWTAMICGLADAGRVCEARK-----------LFEEMPERNVVSWNSMVVGLIR 116
           M +  VV+ T      A A + CE              + +     +V   N++V   +R
Sbjct: 151 MLKAGVVTNTYT---FAAALQACEDSSFIKLGMQIHAAILKSGRVLDVYVANALVAMYVR 207

Query: 117 NGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEME-------------- 162
            G++ EA  +F ++  K++++WN+M+ G+++  +  EA+  F +++              
Sbjct: 208 FGKMPEAAVIFGNLEGKDIVTWNSMLTGFIQNGLYSEALEFFYDLQNADLKPDQVSIISI 267

Query: 163 -------------------------ERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNV 197
                                    + N++   ++I  Y +   +  G   F  M  K++
Sbjct: 268 IVASGRLGYLLNGKEIHAYAIKNGFDSNILVGNTLIDMYAKCCCMSYGGRAFDLMAHKDL 327

Query: 198 VSWTAMIGGFAWNGFHKESLLLF--IEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQ 255
           +SWT    G+A N  + ++L L   ++M+G+  + +   + S      G    G+++E  
Sbjct: 328 ISWTTAAAGYAQNKCYLQALELLRQLQMEGM--DVDATMIGSILLACRGLNCLGKIKEIH 385

Query: 256 NLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVE 315
                  + D +   ++ID Y   G +  A  +F ++  +D V+WT+MIS  V N L  +
Sbjct: 386 GYTIRGGLSDPVLQNTIIDVYGECGIIDYAVRIFESIECKDVVSWTSMISCYVHNGLANK 445

Query: 316 ATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLIS 375
           A  +F  M+  G+ P   T   +  A  + + +  G++IH  +++     +  + N L+ 
Sbjct: 446 ALEVFSSMKETGLEPDYVTLVSILSAVCSLSTLKKGKEIHGFIIRKGFILEGSISNTLVD 505

Query: 376 MYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVT 435
           MYA+CG +++AY IF+   +R+L+ W +M+  +  HG     +++F  M +    P+ +T
Sbjct: 506 MYARCGSVEDAYKIFTCTKNRNLILWTAMISAYGMHGYGEAAVELFMRMKDEKIIPDHIT 565

Query: 436 FLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRL 495
           FL +L ACSH+GLV+ G      M   Y+++P PEHY  +++LLGR   ++EA + V  +
Sbjct: 566 FLALLYACSHSGLVNEGKSFLEIMKCEYQLEPWPEHYTCLVDLLGRRNCLEEAYQIVKSM 625

Query: 496 PFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEE 555
             EP   +W ALLGAC     N EI E AA++LLELD  N   +V++ N++AA+GR  + 
Sbjct: 626 QNEPTPEVWCALLGACRI-HSNKEIGEVAAEKLLELDLDNPGNYVLVSNVFAANGRWKDV 684

Query: 556 HKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
            ++RM M   G+ K PGCSW+     I  FLS DK+  +  +I
Sbjct: 685 EEVRMRMKGSGLTKNPGCSWIEVGNKIHAFLSRDKLHPECDKI 727



 Score =  188 bits (478), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 163/582 (28%), Positives = 279/582 (47%), Gaps = 101/582 (17%)

Query: 21  YSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVV--SWTA 78
           Y K G + +A+ +F  M +R++ ++NAM+ G++ NG    A  ++ EM    V   S+T 
Sbjct: 2   YGKCGSVLDAEMIFDKMSERSIFTWNAMMGGYVSNGEALGALEMYREMRHLGVSFDSYTF 61

Query: 79  MI----CGLADAGRVCEAR---KLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMP 131
            +    CG+ +    C A       +   +  V   NS+V    +  ++N ARK+F+ M 
Sbjct: 62  PVLLKACGIVE-DLFCGAEIHGLAIKYGCDSFVFVVNSLVALYAKCNDINGARKLFDRMY 120

Query: 132 IKN-VISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWT-------------------- 170
           ++N V+SWN++I+ Y    M  EA+ LF EM +  VVT T                    
Sbjct: 121 VRNDVVSWNSIISAYSGNGMCTEALCLFSEMLKAGVVTNTYTFAAALQACEDSSFIKLGM 180

Query: 171 -------------------SMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNG 211
                              ++++ Y R G++ E   +F  +  K++V+W +M+ GF  NG
Sbjct: 181 QIHAAILKSGRVLDVYVANALVAMYVRFGKMPEAAVIFGNLEGKDIVTWNSMLTGFIQNG 240

Query: 212 FHKESLLLFIEMKGICDNGNNCNVQS--CNSMINGYIRFGRLEEA---QNLFDTVPVRDE 266
            + E+L  F +++      +  ++ S    S   GY+  G+   A   +N FD+    + 
Sbjct: 241 LYSEALEFFYDLQNADLKPDQVSIISIIVASGRLGYLLNGKEIHAYAIKNGFDS----NI 296

Query: 267 ISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAH 326
           +   ++ID Y     +S     F  M  +D ++WT   +G  QN+ +++A  L  +++  
Sbjct: 297 LVGNTLIDMYAKCCCMSYGGRAFDLMAHKDLISWTTAAAGYAQNKCYLQALELLRQLQME 356

Query: 327 GVPPLNATF--SVLFGAAGATANIDLG--RQIHCVLMKTESESDLILENCLISMYAKCGV 382
           G+  ++AT   S+L    G      LG  ++IH   ++    SD +L+N +I +Y +CG+
Sbjct: 357 GM-DVDATMIGSILLACRGLNC---LGKIKEIHGYTIRG-GLSDPVLQNTIIDVYGECGI 411

Query: 383 IDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSA 442
           ID A  IF ++  +D+VSW SM+  + H+GLAN+ L+VF SM E+G  P+ VT + ILSA
Sbjct: 412 IDYAVRIFESIECKDVVSWTSMISCYVHNGLANKALEVFSSMKETGLEPDYVTLVSILSA 471

Query: 443 -CS----------HAGLVSRGWELFNAMF--------------DVYKIQPGPEH-----Y 472
            CS          H  ++ +G+ L  ++               D YKI    ++     +
Sbjct: 472 VCSLSTLKKGKEIHGFIIRKGFILEGSISNTLVDMYARCGSVEDAYKIFTCTKNRNLILW 531

Query: 473 VSMINLLGRAGKIKEAEEFVLRLPFE---PDHRIWGALLGAC 511
            +MI+  G  G  + A E  +R+  E   PDH  + ALL AC
Sbjct: 532 TAMISAYGMHGYGEAAVELFMRMKDEKIIPDHITFLALLYAC 573



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 88/284 (30%), Positives = 134/284 (47%), Gaps = 20/284 (7%)

Query: 276 YLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATF 335
           Y   G V +A  +F  M +R    W AM+ G V N   + A  ++ EMR  GV   + TF
Sbjct: 2   YGKCGSVLDAEMIFDKMSERSIFTWNAMMGGYVSNGEALGALEMYREMRHLGVSFDSYTF 61

Query: 336 SVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVS 395
            VL  A G   ++  G +IH + +K   +S + + N L+++YAKC  I+ A  +F  M  
Sbjct: 62  PVLLKACGIVEDLFCGAEIHGLAIKYGCDSFVFVVNSLVALYAKCNDINGARKLFDRMYV 121

Query: 396 R-DLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWE 454
           R D+VSWNS++  +S +G+  E L +F  ML++G   N+ TF   L AC  +  +  G +
Sbjct: 122 RNDVVSWNSIISAYSGNGMCTEALCLFSEMLKAGVVTNTYTFAAALQACEDSSFIKLGMQ 181

Query: 455 LFNAM------FDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALL 508
           +  A+       DVY        YV       R GK+ EA      L    D   W ++L
Sbjct: 182 IHAAILKSGRVLDVYVANALVAMYV-------RFGKMPEAAVIFGNLE-GKDIVTWNSML 233

Query: 509 GACGFCEGNAEIAEHAAKRLLELDPLN-APAHVVLCNIYAASGR 551
              GF +    +   A +   +L   +  P  V + +I  ASGR
Sbjct: 234 --TGFIQNG--LYSEALEFFYDLQNADLKPDQVSIISIIVASGR 273



 Score = 55.5 bits (132), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 41/140 (29%), Positives = 67/140 (47%), Gaps = 11/140 (7%)

Query: 376 MYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVT 435
           MY KCG + +A  IF  M  R + +WN+M+ G+  +G A   L+++  M   G   +S T
Sbjct: 1   MYGKCGSVLDAEMIFDKMSERSIFTWNAMMGGYVSNGEALGALEMYREMRHLGVSFDSYT 60

Query: 436 FLGILSACSHAGLVSRGWELF-NAMFDVYKIQPGPEHYV----SMINLLGRAGKIKEAEE 490
           F  +L AC   G+V    +LF  A      I+ G + +V    S++ L  +   I  A +
Sbjct: 61  FPVLLKAC---GIVE---DLFCGAEIHGLAIKYGCDSFVFVVNSLVALYAKCNDINGARK 114

Query: 491 FVLRLPFEPDHRIWGALLGA 510
              R+    D   W +++ A
Sbjct: 115 LFDRMYVRNDVVSWNSIISA 134


>gi|326504202|dbj|BAJ90933.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 634

 Score =  288 bits (737), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 182/580 (31%), Positives = 302/580 (52%), Gaps = 45/580 (7%)

Query: 32  ALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCE 91
           A+  ++PQ  V SY A LSG   +  L  ARR+F+ +P+ +  ++ ++I   +++G   E
Sbjct: 33  AVASVVPQL-VASYCA-LSGRAGDVALCHARRMFDRVPDPDRFAYNSLIRAYSNSGCPQE 90

Query: 92  ARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMM 151
           A  L  ++  R ++  N   +  +     + AR   +++    V    A+  GYV    +
Sbjct: 91  ALCLHRDVLRRGILP-NEFTLPFVLKA-CSRARAAEHALATHGV----AIKLGYVRQVFV 144

Query: 152 GEAIV--------------LFEEM-EERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKN 196
           G A++              LF EM   RNVV+W +MI G  +AGE  E   LFR M R+ 
Sbjct: 145 GNALLHSSASAGSLRDSRRLFAEMAPHRNVVSWNTMIGGCAQAGETSEACALFREMRRQG 204

Query: 197 VVSWTAMIGGFAWNGFHKESLLLFIEMKG-----------ICDNGNNCNVQSCNSMINGY 245
           V++          + F   SLLL    +G           +  +G+  ++   N++++ Y
Sbjct: 205 VLA----------DVFTFVSLLLVCSKEGNLEVGRLVHCHMLASGSRVDLILGNALVDMY 254

Query: 246 IRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMIS 305
            + G L  A   FD +P+++ +SWTSM+      G V  A   F  MP+R+ ++W AMIS
Sbjct: 255 GKCGDLWMAHRCFDVMPIKNVVSWTSMLCALAKHGSVDAARDWFEQMPERNIISWNAMIS 314

Query: 306 GLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESES 365
             VQ   F E   L+  M++ G+ P   T + +    G   ++  GR IHC +  + S+ 
Sbjct: 315 CYVQGGRFPETLGLYNRMKSLGLTPDEVTLAGVLSVHGQNGDLASGRMIHCYIQDSFSDP 374

Query: 366 DLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESML 425
            + + N LI MYA+CG +D + ++F+ M +++ +SWN ++   + HG A E +  F +M+
Sbjct: 375 GVTVLNSLIDMYARCGQVDTSISLFTEMPNKNTISWNVIIGALAMHGRAQEAVMFFRAMV 434

Query: 426 ESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKI 485
                P+ +TF+G+LSACSH GL+  G   F AM  +Y ++P  EHY  M++LLGR G +
Sbjct: 435 SDAFSPDEITFVGLLSACSHGGLLEDGQYYFKAMRHIYNVKPEVEHYACMVDLLGRHGHL 494

Query: 486 KEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNI 545
            +A + +  +P +PD  +WGAL+GAC    G+ EI + A K+LLEL+ +N    V++ N+
Sbjct: 495 AKAVDLIKDMPMKPDVVVWGALIGACRI-HGHVEIGKLAIKQLLELEGINGGLFVLISNL 553

Query: 546 YAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMF 585
              + +  +  +LR  M  +G +K  G S +  N  I  F
Sbjct: 554 LYETRQWEDMKRLRKLMRDRGTKKDMGVSSIEINNSIHEF 593



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 97/365 (26%), Positives = 158/365 (43%), Gaps = 88/365 (24%)

Query: 25  GFIDEAKALF-QLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWT------ 77
           G + +++ LF ++ P RNVVS+N M+ G  Q G  SEA  LF EM  + V++        
Sbjct: 156 GSLRDSRRLFAEMAPHRNVVSWNTMIGGCAQAGETSEACALFREMRRQGVLADVFTFVSL 215

Query: 78  AMIC---GLADAGRVCE------------------------------ARKLFEEMPERNV 104
            ++C   G  + GR+                                A + F+ MP +NV
Sbjct: 216 LLVCSKEGNLEVGRLVHCHMLASGSRVDLILGNALVDMYGKCGDLWMAHRCFDVMPIKNV 275

Query: 105 VSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEME-- 162
           VSW SM+  L ++G ++ AR  F  MP +N+ISWNAMI+ YV+     E + L+  M+  
Sbjct: 276 VSWTSMLCALAKHGSVDAARDWFEQMPERNIISWNAMISCYVQGGRFPETLGLYNRMKSL 335

Query: 163 -------------------------------------ERNVVTWTSMISGYCRAGEVEEG 185
                                                +  V    S+I  Y R G+V+  
Sbjct: 336 GLTPDEVTLAGVLSVHGQNGDLASGRMIHCYIQDSFSDPGVTVLNSLIDMYARCGQVDTS 395

Query: 186 YCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGY 245
             LF  MP KN +SW  +IG  A +G  +E+++ F   + +  +  + +  +   +++  
Sbjct: 396 ISLFTEMPNKNTISWNVIIGALAMHGRAQEAVMFF---RAMVSDAFSPDEITFVGLLSAC 452

Query: 246 IRFGRLEEAQNLFDTVP----VRDEIS-WTSMIDGYLSVGQVSNAYYLFHNMPDR-DAVA 299
              G LE+ Q  F  +     V+ E+  +  M+D     G ++ A  L  +MP + D V 
Sbjct: 453 SHGGLLEDGQYYFKAMRHIYNVKPEVEHYACMVDLLGRHGHLAKAVDLIKDMPMKPDVVV 512

Query: 300 WTAMI 304
           W A+I
Sbjct: 513 WGALI 517


>gi|356555301|ref|XP_003545972.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Glycine max]
          Length = 858

 Score =  288 bits (737), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 193/634 (30%), Positives = 319/634 (50%), Gaps = 59/634 (9%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEM------PER 71
           +  Y+K G +D+++ LF  + +RNVVS+NA+ S ++Q+    EA  LF+EM      P  
Sbjct: 124 VVMYAKCGLLDDSRRLFGGIVERNVVSWNALFSCYVQSELCGEAVGLFKEMVRSGIMPNE 183

Query: 72  NVVSWTAMIC-GL--ADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFN 128
             +S     C GL   D GR      L   + + +  S N++V    + GE+  A  VF 
Sbjct: 184 FSISIILNACAGLQEGDLGRKIHGLMLKMGL-DLDQFSANALVDMYSKAGEIEGAVAVFQ 242

Query: 129 SMPIKNVISWNAMIAGYVECCMMGEAIVLFEEME----ERNVVTWTS------------- 171
            +   +V+SWNA+IAG V       A++L +EM+      N+ T +S             
Sbjct: 243 DIAHPDVVSWNAIIAGCVLHDCNDLALMLLDEMKGSGTRPNMFTLSSALKACAAMGFKEL 302

Query: 172 ----------------------MISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAW 209
                                 ++  Y +   +++    +  MP+K++++W A+I G++ 
Sbjct: 303 GRQLHSSLIKMDAHSDLFAAVGLVDMYSKCEMMDDARRAYDSMPKKDIIAWNALISGYSQ 362

Query: 210 NGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVR----- 264
            G H +++ LF +M        + N  + ++++        ++  + +  T+ ++     
Sbjct: 363 CGDHLDAVSLFSKM---FSEDIDFNQTTLSTVLKSVASLQAIKVCKQIH-TISIKSGIYS 418

Query: 265 DEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMR 324
           D     S++D Y     +  A  +F      D VA+T+MI+   Q     EA  L+++M+
Sbjct: 419 DFYVINSLLDTYGKCNHIDEASKIFEERTWEDLVAYTSMITAYSQYGDGEEALKLYLQMQ 478

Query: 325 AHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVID 384
              + P     S L  A    +  + G+Q+H   +K     D+   N L++MYAKCG I+
Sbjct: 479 DADIKPDPFICSSLLNACANLSAYEQGKQLHVHAIKFGFMCDIFASNSLVNMYAKCGSIE 538

Query: 385 NAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACS 444
           +A   FS + +R +VSW++M+ G++ HG   E L++F  ML  G  PN +T + +L AC+
Sbjct: 539 DADRAFSEIPNRGIVSWSAMIGGYAQHGHGKEALRLFNQMLRDGVPPNHITLVSVLCACN 598

Query: 445 HAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIW 504
           HAGLV+ G + F  M  ++ I+P  EHY  MI+LLGR+GK+ EA E V  +PFE D  +W
Sbjct: 599 HAGLVNEGKQYFEKMEVMFGIKPTQEHYACMIDLLGRSGKLNEAVELVNSIPFEADGFVW 658

Query: 505 GALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGL 564
           GALLGA      N E+ + AAK L +L+P  +  HV+L NIYA++G      K+R  M  
Sbjct: 659 GALLGAARI-HKNIELGQKAAKMLFDLEPEKSGTHVLLANIYASAGMWENVAKVRKFMKD 717

Query: 565 KGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
             V+K PG SW+     +  F+ GD+  ++  EI
Sbjct: 718 SKVKKEPGMSWIEIKDKVYTFIVGDRSHSRSDEI 751



 Score =  186 bits (473), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 138/546 (25%), Positives = 256/546 (46%), Gaps = 72/546 (13%)

Query: 9   SLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEM 68
           SL  HL +  +K  + G+   A+ L     + +VVS++++LSG++QNG + EA  +F EM
Sbjct: 17  SLRNHLVTLYSKCRRFGY---ARKLVDESSELDVVSWSSLLSGYVQNGFVEEALLVFNEM 73

Query: 69  ----PERNVVSWTAMI--CGLA---DAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGE 119
                + N  ++ +++  C +    + GR      +         V+ N++VV   + G 
Sbjct: 74  CLLGVKCNEFTFPSVLKACSMKRDLNMGRKVHGMAVVTGFESDGFVA-NTLVVMYAKCGL 132

Query: 120 LNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVV------------ 167
           L+++R++F  +  +NV+SWNA+ + YV+  + GEA+ LF+EM    ++            
Sbjct: 133 LDDSRRLFGGIVERNVVSWNALFSCYVQSELCGEAVGLFKEMVRSGIMPNEFSISIILNA 192

Query: 168 ---------------------------TWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSW 200
                                      +  +++  Y +AGE+E    +F+ +   +VVSW
Sbjct: 193 CAGLQEGDLGRKIHGLMLKMGLDLDQFSANALVDMYSKAGEIEGAVAVFQDIAHPDVVSW 252

Query: 201 TAMIGGFAWNGFHKESLLLFIEMKGICDNGN----NCNVQSCNSMINGYIRFGRLEEAQN 256
            A+I G   +  +  +L+L  EMKG     N    +  +++C +M  G+   GR +   +
Sbjct: 253 NAIIAGCVLHDCNDLALMLLDEMKGSGTRPNMFTLSSALKACAAM--GFKELGR-QLHSS 309

Query: 257 LFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEA 316
           L       D  +   ++D Y     + +A   + +MP +D +AW A+ISG  Q    ++A
Sbjct: 310 LIKMDAHSDLFAAVGLVDMYSKCEMMDDARRAYDSMPKKDIIAWNALISGYSQCGDHLDA 369

Query: 317 TYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISM 376
             LF +M +  +     T S +  +  +   I + +QIH + +K+   SD  + N L+  
Sbjct: 370 VSLFSKMFSEDIDFNQTTLSTVLKSVASLQAIKVCKQIHTISIKSGIYSDFYVINSLLDT 429

Query: 377 YAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTF 436
           Y KC  ID A  IF      DLV++ SM+  +S +G   E LK++  M ++   P+    
Sbjct: 430 YGKCNHIDEASKIFEERTWEDLVAYTSMITAYSQYGDGEEALKLYLQMQDADIKPDPFIC 489

Query: 437 LGILSACSHAGLVSRGWEL------FNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEE 490
             +L+AC++     +G +L      F  M D++          S++N+  + G I++A+ 
Sbjct: 490 SSLLNACANLSAYEQGKQLHVHAIKFGFMCDIFASN-------SLVNMYAKCGSIEDADR 542

Query: 491 FVLRLP 496
               +P
Sbjct: 543 AFSEIP 548



 Score =  158 bits (399), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 134/511 (26%), Positives = 228/511 (44%), Gaps = 54/511 (10%)

Query: 88  RVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVE 147
           R   ARKL +E  E +VVSW+S++ G ++NG + EA  VFN M +  V          ++
Sbjct: 31  RFGYARKLVDESSELDVVSWSSLLSGYVQNGFVEEALLVFNEMCLLGVKCNEFTFPSVLK 90

Query: 148 CCMMGEAIVLFEEMEERNVVT--------WTSMISGYCRAGEVEEGYCLFRRMPRKNVVS 199
            C M   + +  ++    VVT          +++  Y + G +++   LF  +  +NVVS
Sbjct: 91  ACSMKRDLNMGRKVHGMAVVTGFESDGFVANTLVVMYAKCGLLDDSRRLFGGIVERNVVS 150

Query: 200 WTAMIGGFAWNGFHKESLLLFIEM--KGICDNGNNCNV--QSCNSMINGYIRFGRLEEAQ 255
           W A+   +  +    E++ LF EM   GI  N  + ++   +C  +  G    GR     
Sbjct: 151 WNALFSCYVQSELCGEAVGLFKEMVRSGIMPNEFSISIILNACAGLQEG--DLGRKIHGL 208

Query: 256 NLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVE 315
            L   + + D+ S  +++D Y   G++  A  +F ++   D V+W A+I+G V ++    
Sbjct: 209 MLKMGLDL-DQFSANALVDMYSKAGEIEGAVAVFQDIAHPDVVSWNAIIAGCVLHDCNDL 267

Query: 316 ATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLIS 375
           A  L  EM+  G  P   T S    A  A    +LGRQ+H  L+K ++ SDL     L+ 
Sbjct: 268 ALMLLDEMKGSGTRPNMFTLSSALKACAAMGFKELGRQLHSSLIKMDAHSDLFAAVGLVD 327

Query: 376 MYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVT 435
           MY+KC ++D+A   + +M  +D+++WN+++ G+S  G   + + +F  M       N  T
Sbjct: 328 MYSKCEMMDDARRAYDSMPKKDIIAWNALISGYSQCGDHLDAVSLFSKMFSEDIDFNQTT 387

Query: 436 FLGILSA---------CSHAGLVS------RGWELFNAMFDVY----KIQPGPE------ 470
              +L +         C     +S        + + N++ D Y     I    +      
Sbjct: 388 LSTVLKSVASLQAIKVCKQIHTISIKSGIYSDFYVINSLLDTYGKCNHIDEASKIFEERT 447

Query: 471 -----HYVSMINLLGRAGKIKEAEEFVLRL---PFEPDHRIWGALLGACG---FCEGNAE 519
                 Y SMI    + G  +EA +  L++     +PD  I  +LL AC      E   +
Sbjct: 448 WEDLVAYTSMITAYSQYGDGEEALKLYLQMQDADIKPDPFICSSLLNACANLSAYEQGKQ 507

Query: 520 IAEHAAKRLLELDPLNAPAHVVLCNIYAASG 550
           +  HA K     D   + +   L N+YA  G
Sbjct: 508 LHVHAIKFGFMCDIFASNS---LVNMYAKCG 535



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 71/250 (28%), Positives = 125/250 (50%), Gaps = 6/250 (2%)

Query: 264 RDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEM 323
           RD      ++  Y    +   A  L     + D V+W++++SG VQN    EA  +F EM
Sbjct: 14  RDPSLRNHLVTLYSKCRRFGYARKLVDESSELDVVSWSSLLSGYVQNGFVEEALLVFNEM 73

Query: 324 RAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVI 383
              GV     TF  +  A     ++++GR++H + + T  ESD  + N L+ MYAKCG++
Sbjct: 74  CLLGVKCNEFTFPSVLKACSMKRDLNMGRKVHGMAVVTGFESDGFVANTLVVMYAKCGLL 133

Query: 384 DNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSAC 443
           D++  +F  +V R++VSWN++   +    L  E + +F+ M+ SG  PN  +   IL+AC
Sbjct: 134 DDSRRLFGGIVERNVVSWNALFSCYVQSELCGEAVGLFKEMVRSGIMPNEFSISIILNAC 193

Query: 444 SHAGLVSRGWELFNAMFDVYKIQPGPEHYV--SMINLLGRAGKIKEAEEFVLRLPFEPDH 501
           +       G ++   M    K+    + +   +++++  +AG+I E    V +    PD 
Sbjct: 194 AGLQEGDLGRKIHGLML---KMGLDLDQFSANALVDMYSKAGEI-EGAVAVFQDIAHPDV 249

Query: 502 RIWGALLGAC 511
             W A++  C
Sbjct: 250 VSWNAIIAGC 259



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 46/92 (50%)

Query: 353 QIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHG 412
           ++H  L+K     D  L N L+++Y+KC     A  +       D+VSW+S++ G+  +G
Sbjct: 2   ELHAHLIKFGFSRDPSLRNHLVTLYSKCRRFGYARKLVDESSELDVVSWSSLLSGYVQNG 61

Query: 413 LANETLKVFESMLESGTHPNSVTFLGILSACS 444
              E L VF  M   G   N  TF  +L ACS
Sbjct: 62  FVEEALLVFNEMCLLGVKCNEFTFPSVLKACS 93


>gi|413932901|gb|AFW67452.1| hypothetical protein ZEAMMB73_642603 [Zea mays]
          Length = 853

 Score =  288 bits (737), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 194/639 (30%), Positives = 311/639 (48%), Gaps = 72/639 (11%)

Query: 12  VHLTSSITK-YSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMP- 69
           V++ S++ K Y+  G +  A+  F  +P+R+ V +N M+ G ++ G +  A RLF  M  
Sbjct: 176 VYVGSALVKMYADAGLLGNARDAFDGIPERDCVLWNVMMDGCIKAGDVDGAVRLFRNMRA 235

Query: 70  ---ERNVVSWTAMICGLADAGRVCEARKLFEEMP----ERNVVSWNSMVVGLIRNGELNE 122
              E N  +    +   A    +    +L         E  V   N+++    +   L++
Sbjct: 236 SGCEPNFATLACFLSVCATDADLLSGAQLHSLAVKCGLEPEVAVANTLLAMYAKCQCLDD 295

Query: 123 ARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEER----NVVTWTSMISGYC- 177
           A ++F  MP  ++++WN MI+G V+  +  EA  LF +M+      + +T  S++     
Sbjct: 296 AWRLFELMPQDDLVTWNGMISGCVQNGLFVEAFGLFYDMQRSGARPDSITLVSLLPALTD 355

Query: 178 ----RAGEVEEGY----------------------CLFRRMPRK--------NVVSWTAM 203
               + G+   GY                      C   RM +         +VV  + M
Sbjct: 356 LNGLKQGKEVHGYIVRNCVNMDVFLVSALVDIYFKCRDVRMAQNLYDAARAIDVVIGSTM 415

Query: 204 IGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQS----CNSM--------INGYIRFGRL 251
           I G+  NG  +E+L +F  +   C   N   + S    C SM        I+GY+     
Sbjct: 416 ISGYVLNGMSEEALQMFRYLLEQCIKPNAVTIASVLPGCASMAALPLGQQIHGYVLRNAY 475

Query: 252 EEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNE 311
           E           R     ++++D Y   G++  ++Y+F  M  +D V W +MIS   QN 
Sbjct: 476 E-----------RKCYVESALMDMYAKCGRLDLSHYIFLKMSQKDEVTWNSMISSFSQNG 524

Query: 312 LFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILEN 371
              EA  LF +M   G+   N T S    A  +   I  G++IH V +K   ++D+  E+
Sbjct: 525 KPQEALDLFRQMCMEGIKYNNITISAALSACASLPAIYYGKEIHGVTIKGPIKADIFAES 584

Query: 372 CLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHP 431
            LI MYAKCG ++ A  +F  M  ++ VSWNS++  +  HGL  E++ +   M E G  P
Sbjct: 585 ALIDMYAKCGNLELALRVFEFMPDKNEVSWNSIISAYGAHGLVKESVSLLHGMQEEGYKP 644

Query: 432 NSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEF 491
           + VTFL ++SAC+HAGLV  G +LF  M   Y I P  EH+  M++L  R+GK+ +A +F
Sbjct: 645 DHVTFLALISACAHAGLVEEGVQLFQCMTKKYLIAPRMEHFACMVDLYSRSGKLDKAIQF 704

Query: 492 VLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGR 551
           +  +PF+PD  IWGALL AC     N E+A+ A++ L +LDP N+  +V++ NI A +GR
Sbjct: 705 IADMPFKPDAGIWGALLHACRV-HRNVELADIASQELFKLDPANSGYYVLMSNINAVAGR 763

Query: 552 HVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDK 590
                K+R  M    + K+PG SW+  N    +F++ DK
Sbjct: 764 WDGVSKVRRLMKDNKILKIPGYSWVDVNNSSHLFVASDK 802



 Score =  129 bits (323), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 88/317 (27%), Positives = 147/317 (46%), Gaps = 20/317 (6%)

Query: 152 GEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVS---WTAMIGGFA 208
             A+V     +  ++   T ++  Y  A    +   +F  +PR    S   W  +I GF 
Sbjct: 56  ARAVVSGALSDHNHLALHTRLLGMYVLARRFRDAVAVFSALPRAAAASSLPWNWLIRGFT 115

Query: 209 WNGFHKESLLLFIEM----KGICDNGNNCN--VQSCNSMINGYIRFGRL----EEAQNLF 258
             G H  ++L +++M         + +     V+SC ++  G +  GRL      A  L 
Sbjct: 116 AAGQHHLAVLFYVKMWSHPAAPSPDAHTLPYVVKSCAAL--GAMSLGRLVHRTARAIGLA 173

Query: 259 DTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATY 318
           + V V      ++++  Y   G + NA   F  +P+RD V W  M+ G ++      A  
Sbjct: 174 NDVYV-----GSALVKMYADAGLLGNARDAFDGIPERDCVLWNVMMDGCIKAGDVDGAVR 228

Query: 319 LFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYA 378
           LF  MRA G  P  AT +         A++  G Q+H + +K   E ++ + N L++MYA
Sbjct: 229 LFRNMRASGCEPNFATLACFLSVCATDADLLSGAQLHSLAVKCGLEPEVAVANTLLAMYA 288

Query: 379 KCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLG 438
           KC  +D+A+ +F  M   DLV+WN M+ G   +GL  E   +F  M  SG  P+S+T + 
Sbjct: 289 KCQCLDDAWRLFELMPQDDLVTWNGMISGCVQNGLFVEAFGLFYDMQRSGARPDSITLVS 348

Query: 439 ILSACSHAGLVSRGWEL 455
           +L A +    + +G E+
Sbjct: 349 LLPALTDLNGLKQGKEV 365



 Score =  122 bits (305), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 107/481 (22%), Positives = 204/481 (42%), Gaps = 49/481 (10%)

Query: 45  YNAMLSGFLQNGRLSEARRLFEEMPERNVVS---WTAMICGLADAGRVCEARKLFEEM-- 99
           +  +L  ++   R  +A  +F  +P     S   W  +I G   AG+   A   + +M  
Sbjct: 73  HTRLLGMYVLARRFRDAVAVFSALPRAAAASSLPWNWLIRGFTAAGQHHLAVLFYVKMWS 132

Query: 100 ----PERNVVSWNSMVVGLIRNGELNEARKVFNSMPI----KNVISWNAMIAGYVECCMM 151
               P  +  +   +V      G ++  R V  +        +V   +A++  Y +  ++
Sbjct: 133 HPAAPSPDAHTLPYVVKSCAALGAMSLGRLVHRTARAIGLANDVYVGSALVKMYADAGLL 192

Query: 152 GEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNG 211
           G A   F+ + ER+ V W  M+ G  +AG+V+    LFR M         A +  F    
Sbjct: 193 GNARDAFDGIPERDCVLWNVMMDGCIKAGDVDGAVRLFRNMRASGCEPNFATLACFLSVC 252

Query: 212 FHKESLLLFIEMKGICDN-GNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWT 270
                LL   ++  +    G    V   N+++  Y +   L++A  LF+           
Sbjct: 253 ATDADLLSGAQLHSLAVKCGLEPEVAVANTLLAMYAKCQCLDDAWRLFEL---------- 302

Query: 271 SMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPP 330
                                MP  D V W  MISG VQN LFVEA  LF +M+  G  P
Sbjct: 303 ---------------------MPQDDLVTWNGMISGCVQNGLFVEAFGLFYDMQRSGARP 341

Query: 331 LNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIF 390
            + T   L  A      +  G+++H  +++     D+ L + L+ +Y KC  +  A N++
Sbjct: 342 DSITLVSLLPALTDLNGLKQGKEVHGYIVRNCVNMDVFLVSALVDIYFKCRDVRMAQNLY 401

Query: 391 SNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVS 450
               + D+V  ++M+ G+  +G++ E L++F  +LE    PN+VT   +L  C+    + 
Sbjct: 402 DAARAIDVVIGSTMISGYVLNGMSEEALQMFRYLLEQCIKPNAVTIASVLPGCASMAALP 461

Query: 451 RGWELFNAMF-DVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLG 509
            G ++   +  + Y+ +   E   +++++  + G++  +    L++  + D   W +++ 
Sbjct: 462 LGQQIHGYVLRNAYERKCYVES--ALMDMYAKCGRLDLSHYIFLKMS-QKDEVTWNSMIS 518

Query: 510 A 510
           +
Sbjct: 519 S 519


>gi|413947530|gb|AFW80179.1| hypothetical protein ZEAMMB73_142662 [Zea mays]
          Length = 649

 Score =  288 bits (737), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 157/444 (35%), Positives = 243/444 (54%), Gaps = 3/444 (0%)

Query: 157 LFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVV-SWTAMIGGFAWNGFHKE 215
           L  E E    V W ++ISG+ R     E  C F  M R     +    +   +  G    
Sbjct: 100 LLSERERDTPVVWNALISGHNRCRRFGEACCSFVDMARAGAAPTPVTYVSVLSACGKGTG 159

Query: 216 SLLLFIEMKG-ICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMID 274
            +LL +++ G +  +G   +++  N++++ Y     +E A  LFD + VR  +SWTS++ 
Sbjct: 160 DVLLGMQVHGRVVGSGVLPDLRVENALVDMYAECADMESAWKLFDGMQVRSVVSWTSLLS 219

Query: 275 GYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNAT 334
           G   +G+V  A  LF  MP+RD V+WTAMI G VQ   F EA  +F EM+   V     T
Sbjct: 220 GLTRLGRVDEARDLFGRMPERDTVSWTAMIDGYVQAARFREALEMFREMQCSNVSADEFT 279

Query: 335 FSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMV 394
              +  A      +++G  +   + +   + D  + N LI MY+KCG I+ A ++F +M 
Sbjct: 280 MVSVITACAQLGALEMGEWVRVYMSRQGIKMDAFVGNALIDMYSKCGSIERALDVFKDMH 339

Query: 395 SRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWE 454
            RD  +W ++++G + +G   E +++F  M+     P+ VTF+G+L+AC+HAGLV +G E
Sbjct: 340 HRDKFTWTAIILGLAVNGYGEEAIEMFHRMIGVSETPDEVTFIGVLTACTHAGLVDKGRE 399

Query: 455 LFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFC 514
            F +M + Y I P   HY  +I+L GRAGKI EA + + ++P  P+  IWG LL AC   
Sbjct: 400 FFLSMRETYNIAPNVVHYGCIIDLFGRAGKITEALDAIDQMPMTPNSTIWGTLLAACRV- 458

Query: 515 EGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCS 574
            GN+EI E   +RLL++DP N+  + +L NIYA   R  +  +LR  +  KG++K PGCS
Sbjct: 459 HGNSEIGELVTERLLQMDPENSTVYTLLSNIYAKCNRWEDVRRLRHTIMEKGIKKEPGCS 518

Query: 575 WLMRNGGIQMFLSGDKIPAQVAEI 598
            +  NG I  F++GD+      EI
Sbjct: 519 LIEMNGIIHEFVAGDQSHPMSKEI 542



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 108/393 (27%), Positives = 175/393 (44%), Gaps = 20/393 (5%)

Query: 64  LFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIR-----NG 118
           L  E      V W A+I G     R  EA   F +M            V ++       G
Sbjct: 100 LLSERERDTPVVWNALISGHNRCRRFGEACCSFVDMARAGAAPTPVTYVSVLSACGKGTG 159

Query: 119 E----LNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMIS 174
           +    +    +V  S  + ++   NA++  Y EC  M  A  LF+ M+ R+VV+WTS++S
Sbjct: 160 DVLLGMQVHGRVVGSGVLPDLRVENALVDMYAECADMESAWKLFDGMQVRSVVSWTSLLS 219

Query: 175 GYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCN 234
           G  R G V+E   LF RMP ++ VSWTAMI G+      +E+L +F EM+  C N  + +
Sbjct: 220 GLTRLGRVDEARDLFGRMPERDTVSWTAMIDGYVQAARFREALEMFREMQ--CSN-VSAD 276

Query: 235 VQSCNSMINGYIRFGRLEEAQNLFDTVPVR----DEISWTSMIDGYLSVGQVSNAYYLFH 290
             +  S+I    + G LE  + +   +  +    D     ++ID Y   G +  A  +F 
Sbjct: 277 EFTMVSVITACAQLGALEMGEWVRVYMSRQGIKMDAFVGNALIDMYSKCGSIERALDVFK 336

Query: 291 NMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDL 350
           +M  RD   WTA+I GL  N    EA  +F  M      P   TF  +  A      +D 
Sbjct: 337 DMHHRDKFTWTAIILGLAVNGYGEEAIEMFHRMIGVSETPDEVTFIGVLTACTHAGLVDK 396

Query: 351 GRQIHCVLMKTES-ESDLILENCLISMYAKCGVIDNAYNIFSNM-VSRDLVSWNSMVMGF 408
           GR+    + +T +   +++   C+I ++ + G I  A +    M ++ +   W +++   
Sbjct: 397 GREFFLSMRETYNIAPNVVHYGCIIDLFGRAGKITEALDAIDQMPMTPNSTIWGTLLAAC 456

Query: 409 SHHGLANETLKVFESMLESGTHPNSVTFLGILS 441
             HG +     V E +L+    P + T   +LS
Sbjct: 457 RVHGNSEIGELVTERLLQ--MDPENSTVYTLLS 487



 Score =  108 bits (271), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 81/258 (31%), Positives = 130/258 (50%), Gaps = 14/258 (5%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWT 77
           +  Y++   ++ A  LF  M  R+VVS+ ++LSG  + GR+ EAR LF  MPER+ VSWT
Sbjct: 187 VDMYAECADMESAWKLFDGMQVRSVVSWTSLLSGLTRLGRVDEARDLFGRMPERDTVSWT 246

Query: 78  AMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNG------ELNEARKVFNSMP 131
           AMI G   A R  EA ++F EM   NV +    +V +I         E+ E  +V+ S  
Sbjct: 247 AMIDGYVQAARFREALEMFREMQCSNVSADEFTMVSVITACAQLGALEMGEWVRVYMSRQ 306

Query: 132 -IK-NVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLF 189
            IK +    NA+I  Y +C  +  A+ +F++M  R+  TWT++I G    G  EE   +F
Sbjct: 307 GIKMDAFVGNALIDMYSKCGSIERALDVFKDMHHRDKFTWTAIILGLAVNGYGEEAIEMF 366

Query: 190 RRM----PRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGY 245
            RM       + V++  ++      G   +    F+ M+   +   N     C  +I+ +
Sbjct: 367 HRMIGVSETPDEVTFIGVLTACTHAGLVDKGREFFLSMRETYNIAPNVVHYGC--IIDLF 424

Query: 246 IRFGRLEEAQNLFDTVPV 263
            R G++ EA +  D +P+
Sbjct: 425 GRAGKITEALDAIDQMPM 442



 Score = 92.8 bits (229), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 106/429 (24%), Positives = 171/429 (39%), Gaps = 109/429 (25%)

Query: 43  VSYNAMLSGFLQNGRLSEARRLFEEM--------PERNVVSWTAMICGLADA-------G 87
           V +NA++SG  +  R  EA   F +M        P   V   +A   G  D        G
Sbjct: 110 VVWNALISGHNRCRRFGEACCSFVDMARAGAAPTPVTYVSVLSACGKGTGDVLLGMQVHG 169

Query: 88  RVC-------------------------EARKLFEEMPERNVVSWNSMVVGLIRNGELNE 122
           RV                           A KLF+ M  R+VVSW S++ GL R G ++E
Sbjct: 170 RVVGSGVLPDLRVENALVDMYAECADMESAWKLFDGMQVRSVVSWTSLLSGLTRLGRVDE 229

Query: 123 ARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNV----VTWTSMISG--- 175
           AR +F  MP ++ +SW AMI GYV+     EA+ +F EM+  NV     T  S+I+    
Sbjct: 230 ARDLFGRMPERDTVSWTAMIDGYVQAARFREALEMFREMQCSNVSADEFTMVSVITACAQ 289

Query: 176 --------------------------------YCRAGEVEEGYCLFRRMPRKNVVSWTAM 203
                                           Y + G +E    +F+ M  ++  +WTA+
Sbjct: 290 LGALEMGEWVRVYMSRQGIKMDAFVGNALIDMYSKCGSIERALDVFKDMHHRDKFTWTAI 349

Query: 204 IGGFAWNGFHKESLLLFIEMKGICDNGNNCN----VQSCNSMINGYIRFGR-----LEEA 254
           I G A NG+ +E++ +F  M G+ +  +       + +C     G +  GR     + E 
Sbjct: 350 ILGLAVNGYGEEAIEMFHRMIGVSETPDEVTFIGVLTACTHA--GLVDKGREFFLSMRET 407

Query: 255 QNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMP-DRDAVAWTAMISGLV---QN 310
            N+   V     + +  +ID +   G+++ A      MP   ++  W  +++       +
Sbjct: 408 YNIAPNV-----VHYGCIIDLFGRAGKITEALDAIDQMPMTPNSTIWGTLLAACRVHGNS 462

Query: 311 ELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANI--DLGRQIHCVL---MKTESES 365
           E+    T   ++M      P N+T   L     A  N   D+ R  H ++   +K E   
Sbjct: 463 EIGELVTERLLQM-----DPENSTVYTLLSNIYAKCNRWEDVRRLRHTIMEKGIKKEPGC 517

Query: 366 DLILENCLI 374
            LI  N +I
Sbjct: 518 SLIEMNGII 526



 Score = 76.3 bits (186), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 66/234 (28%), Positives = 107/234 (45%), Gaps = 25/234 (10%)

Query: 11  VVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPE 70
           VV  TS ++  ++ G +DEA+ LF  MP+R+ VS+ AM+ G++Q  R  EA  +F EM  
Sbjct: 211 VVSWTSLLSGLTRLGRVDEARDLFGRMPERDTVSWTAMIDGYVQAARFREALEMFREMQC 270

Query: 71  RNV----VSWTAMICGLADAG--------RVCEARKLFEEMPERNVVSWNSMVVGLIRNG 118
            NV     +  ++I   A  G        RV  +R+      + +    N+++    + G
Sbjct: 271 SNVSADEFTMVSVITACAQLGALEMGEWVRVYMSRQGI----KMDAFVGNALIDMYSKCG 326

Query: 119 ELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEM----EERNVVTWTSMIS 174
            +  A  VF  M  ++  +W A+I G        EAI +F  M    E  + VT+  +++
Sbjct: 327 SIERALDVFKDMHHRDKFTWTAIILGLAVNGYGEEAIEMFHRMIGVSETPDEVTFIGVLT 386

Query: 175 GYCRAGEVEEGYCLFRRMPRK-----NVVSWTAMIGGFAWNGFHKESLLLFIEM 223
               AG V++G   F  M        NVV +  +I  F   G   E+L    +M
Sbjct: 387 ACTHAGLVDKGREFFLSMRETYNIAPNVVHYGCIIDLFGRAGKITEALDAIDQM 440



 Score = 47.8 bits (112), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 54/225 (24%), Positives = 90/225 (40%), Gaps = 32/225 (14%)

Query: 315 EATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLI 374
           +A   +  M A G  P   TF  L  A    ++    R +H  ++K     +  +   L+
Sbjct: 26  DAVAGYARMLARGAMPDAYTFPPLLKAVARGSSAAPVRAVHAHVVKFGMGRNAHVATSLV 85

Query: 375 SMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSV 434
           + YA  G    A  + S       V WN+++ G +      E    F  M  +G  P  V
Sbjct: 86  TAYAAGGDGAAARALLSERERDTPVVWNALISGHNRCRRFGEACCSFVDMARAGAAPTPV 145

Query: 435 TFLGILSACS------------HAGLVSRG----WELFNAMFDVY----------KIQPG 468
           T++ +LSAC             H  +V  G      + NA+ D+Y          K+  G
Sbjct: 146 TYVSVLSACGKGTGDVLLGMQVHGRVVGSGVLPDLRVENALVDMYAECADMESAWKLFDG 205

Query: 469 PE-----HYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALL 508
            +      + S+++ L R G++ EA +   R+P E D   W A++
Sbjct: 206 MQVRSVVSWTSLLSGLTRLGRVDEARDLFGRMP-ERDTVSWTAMI 249


>gi|354805159|gb|AER41579.1| CRR4 [Oryza brachyantha]
          Length = 626

 Score =  288 bits (737), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 161/483 (33%), Positives = 250/483 (51%), Gaps = 41/483 (8%)

Query: 118 GELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYC 177
           G +  AR+VF+ M  ++V+SWN++I  Y+       A+ LFE M ERNVV+W ++++G+ 
Sbjct: 157 GRVAAARQVFDEMVDRDVVSWNSIIGVYMSSGDYTGAMELFEAMPERNVVSWNTLVAGFA 216

Query: 178 RAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQS 237
           R G++     +F RMP +N +SW                                     
Sbjct: 217 RVGDMVTAQTVFDRMPSRNAISW------------------------------------- 239

Query: 238 CNSMINGYIRFGRLEEAQNLFDTVPVR-DEISWTSMIDGYLSVGQVSNAYYLFHNMPDRD 296
            N MI+GY   G +E A+++FD +  + D +SWT+M+  Y  +G +  A  LF +MP ++
Sbjct: 240 -NLMISGYASSGDVEAARSMFDRMDQKKDVVSWTAMVSAYAKIGDLDTAKELFDHMPLKN 298

Query: 297 AVAWTAMISGLVQNELFVEATYLFMEMRAHG-VPPLNATFSVLFGAAGATANIDLGRQIH 355
            V+W AMI+G   N  + EA   F  M   G   P  AT   +  A     +++    I 
Sbjct: 299 LVSWNAMITGYNHNSRYGEALRTFQLMMLEGRFRPDEATLVSVVSACAQLGSVEYCNWIS 358

Query: 356 CVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLAN 415
             + K+     + L N LI M+AKCG +  A +IF  M +R +++W +M+ GF+ +GL  
Sbjct: 359 SFIRKSNVHLTIALGNALIDMFAKCGDVGRAQSIFYEMKTRCIITWTTMISGFAFNGLCR 418

Query: 416 ETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSM 475
           E L V+ +M   G   + + F+  L+AC H GL+  GW +FN M + Y IQP  EHY  +
Sbjct: 419 EALLVYNNMCREGVELDDMVFIAALAACVHGGLLQEGWSIFNEMVEQYNIQPRMEHYGCV 478

Query: 476 INLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLN 535
           ++LLGRAG ++EA  F+  +P EP   IW  LL +C    GNAE  ++ +K++ EL+P N
Sbjct: 479 VDLLGRAGNLQEAVLFIESMPLEPSVVIWATLLSSC-VAHGNAEFIDYVSKKITELEPFN 537

Query: 536 APAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQV 595
           +   V++ N  A  GR       R  M   G+ KVPG S +     +  FL+ D +  + 
Sbjct: 538 SSYQVLVSNSSALEGRWDGVIGARTIMRNWGIEKVPGSSSIQVGSEVHEFLAKDTMHERR 597

Query: 596 AEI 598
            EI
Sbjct: 598 KEI 600



 Score =  176 bits (446), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 114/367 (31%), Positives = 190/367 (51%), Gaps = 11/367 (2%)

Query: 56  GRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLI 115
           GR++ AR++F+EM +R+VVSW ++I     +G    A +LFE MPERNVVSWN++V G  
Sbjct: 157 GRVAAARQVFDEMVDRDVVSWNSIIGVYMSSGDYTGAMELFEAMPERNVVSWNTLVAGFA 216

Query: 116 RNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEE-RNVVTWTSMIS 174
           R G++  A+ VF+ MP +N ISWN MI+GY     +  A  +F+ M++ ++VV+WT+M+S
Sbjct: 217 RVGDMVTAQTVFDRMPSRNAISWNLMISGYASSGDVEAARSMFDRMDQKKDVVSWTAMVS 276

Query: 175 GYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCN 234
            Y + G+++    LF  MP KN+VSW AMI G+  N  + E+L  F  M  + +     +
Sbjct: 277 AYAKIGDLDTAKELFDHMPLKNLVSWNAMITGYNHNSRYGEALRTFQLM--MLEGRFRPD 334

Query: 235 VQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWT-----SMIDGYLSVGQVSNAYYLF 289
             +  S+++   + G +E   N   +   +  +  T     ++ID +   G V  A  +F
Sbjct: 335 EATLVSVVSACAQLGSVEYC-NWISSFIRKSNVHLTIALGNALIDMFAKCGDVGRAQSIF 393

Query: 290 HNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANID 349
           + M  R  + WT MISG   N L  EA  ++  M   GV   +  F     A      + 
Sbjct: 394 YEMKTRCIITWTTMISGFAFNGLCREALLVYNNMCREGVELDDMVFIAALAACVHGGLLQ 453

Query: 350 LGRQIHCVLMKTES-ESDLILENCLISMYAKCGVIDNAYNIFSNM-VSRDLVSWNSMVMG 407
            G  I   +++  + +  +    C++ +  + G +  A     +M +   +V W +++  
Sbjct: 454 EGWSIFNEMVEQYNIQPRMEHYGCVVDLLGRAGNLQEAVLFIESMPLEPSVVIWATLLSS 513

Query: 408 FSHHGLA 414
              HG A
Sbjct: 514 CVAHGNA 520



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 110/383 (28%), Positives = 186/383 (48%), Gaps = 56/383 (14%)

Query: 11  VVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPE 70
           VV   S I  Y   G    A  LF+ MP+RNVVS+N +++GF + G +  A+ +F+ MP 
Sbjct: 174 VVSWNSIIGVYMSSGDYTGAMELFEAMPERNVVSWNTLVAGFARVGDMVTAQTVFDRMPS 233

Query: 71  RNVVSWTAMICGLADAGRVCEARKLFEEMPE-RNVVSWNSMVVGLIRNGELNEARKVFNS 129
           RN +SW  MI G A +G V  AR +F+ M + ++VVSW +MV    + G+L+ A+++F+ 
Sbjct: 234 RNAISWNLMISGYASSGDVEAARSMFDRMDQKKDVVSWTAMVSAYAKIGDLDTAKELFDH 293

Query: 130 MPIKNVISWNAMIAGYVECCMMGEAIVLFEEM--------EERNVVT------------- 168
           MP+KN++SWNAMI GY      GEA+  F+ M        +E  +V+             
Sbjct: 294 MPLKNLVSWNAMITGYNHNSRYGEALRTFQLMMLEGRFRPDEATLVSVVSACAQLGSVEY 353

Query: 169 --WTS-----------------MISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAW 209
             W S                 +I  + + G+V     +F  M  + +++WT MI GFA+
Sbjct: 354 CNWISSFIRKSNVHLTIALGNALIDMFAKCGDVGRAQSIFYEMKTRCIITWTTMISGFAF 413

Query: 210 NGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEIS- 268
           NG  +E+LL++  M   C  G   +     + +   +  G L+E  ++F+ +  +  I  
Sbjct: 414 NGLCREALLVYNNM---CREGVELDDMVFIAALAACVHGGLLQEGWSIFNEMVEQYNIQP 470

Query: 269 ----WTSMIDGYLSVGQVSNAYYLFHNMP-DRDAVAWTAMISGLVQ--NELFVEATYLFM 321
               +  ++D     G +  A     +MP +   V W  ++S  V   N  F++    ++
Sbjct: 471 RMEHYGCVVDLLGRAGNLQEAVLFIESMPLEPSVVIWATLLSSCVAHGNAEFID----YV 526

Query: 322 EMRAHGVPPLNATFSVLFGAAGA 344
             +   + P N+++ VL   + A
Sbjct: 527 SKKITELEPFNSSYQVLVSNSSA 549



 Score =  155 bits (391), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 98/315 (31%), Positives = 166/315 (52%), Gaps = 25/315 (7%)

Query: 25  GFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLA 84
           G +  A+ +F  M  R+VVS+N+++  ++ +G  + A  LFE MPERNVVSW  ++ G A
Sbjct: 157 GRVAAARQVFDEMVDRDVVSWNSIIGVYMSSGDYTGAMELFEAMPERNVVSWNTLVAGFA 216

Query: 85  DAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSM-PIKNVISWNAMIA 143
             G +  A+ +F+ MP RN +SWN M+ G   +G++  AR +F+ M   K+V+SW AM++
Sbjct: 217 RVGDMVTAQTVFDRMPSRNAISWNLMISGYASSGDVEAARSMFDRMDQKKDVVSWTAMVS 276

Query: 144 GYVECCMMGEAIVLFEEMEERNVVTWTSMISGY---CRAGEVEEGYCLF----RRMPRK- 195
            Y +   +  A  LF+ M  +N+V+W +MI+GY    R GE    + L     R  P + 
Sbjct: 277 AYAKIGDLDTAKELFDHMPLKNLVSWNAMITGYNHNSRYGEALRTFQLMMLEGRFRPDEA 336

Query: 196 ---NVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLE 252
              +VVS  A +G   +  +    +  FI    +     +  +   N++I+ + + G + 
Sbjct: 337 TLVSVVSACAQLGSVEYCNW----ISSFIRKSNV-----HLTIALGNALIDMFAKCGDVG 387

Query: 253 EAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNM----PDRDAVAWTAMISGLV 308
            AQ++F  +  R  I+WT+MI G+   G    A  +++NM     + D + + A ++  V
Sbjct: 388 RAQSIFYEMKTRCIITWTTMISGFAFNGLCREALLVYNNMCREGVELDDMVFIAALAACV 447

Query: 309 QNELFVEATYLFMEM 323
              L  E   +F EM
Sbjct: 448 HGGLLQEGWSIFNEM 462



 Score = 86.3 bits (212), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 74/261 (28%), Positives = 117/261 (44%), Gaps = 50/261 (19%)

Query: 1   MSERNHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSE 60
           M +R   K  VV  T+ ++ Y+K G +D AK LF  MP +N+VS+NAM++G+  N R  E
Sbjct: 258 MFDRMDQKKDVVSWTAMVSAYAKIGDLDTAKELFDHMPLKNLVSWNAMITGYNHNSRYGE 317

Query: 61  ARRLFEEM-------PER----NVVS------------W-----------------TAMI 80
           A R F+ M       P+     +VVS            W                  A+I
Sbjct: 318 ALRTFQLMMLEGRFRPDEATLVSVVSACAQLGSVEYCNWISSFIRKSNVHLTIALGNALI 377

Query: 81  CGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNV----I 136
              A  G V  A+ +F EM  R +++W +M+ G   NG   EA  V+N+M  + V    +
Sbjct: 378 DMFAKCGDVGRAQSIFYEMKTRCIITWTTMISGFAFNGLCREALLVYNNMCREGVELDDM 437

Query: 137 SWNAMIAGYVECCMMGEAIVLFEEMEERNVVT-----WTSMISGYCRAGEVEEGYCLFRR 191
            + A +A  V   ++ E   +F EM E+  +      +  ++    RAG ++E       
Sbjct: 438 VFIAALAACVHGGLLQEGWSIFNEMVEQYNIQPRMEHYGCVVDLLGRAGNLQEAVLFIES 497

Query: 192 MP-RKNVVSWTAMIGGFAWNG 211
           MP   +VV W  ++     +G
Sbjct: 498 MPLEPSVVIWATLLSSCVAHG 518



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 57/225 (25%), Positives = 102/225 (45%), Gaps = 19/225 (8%)

Query: 315 EATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLI 374
           +A   +  M A GVPP   TF+ L  A          R +H  +++    S++ ++N L+
Sbjct: 88  DALAAYTAMLAAGVPPNGFTFTFLLRACALLGFPRPCRCVHGQIVRWGFGSEVFVQNTLL 147

Query: 375 SMYAKC---GVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHP 431
            +Y +C   G +  A  +F  MV RD+VSWNS++  +   G     +++FE+M E     
Sbjct: 148 DVYYRCGGPGRVAAARQVFDEMVDRDVVSWNSIIGVYMSSGDYTGAMELFEAMPER---- 203

Query: 432 NSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEF 491
           N V++  +++  +  G +     +F+ M     I      +  MI+    +G ++ A   
Sbjct: 204 NVVSWNTLVAGFARVGDMVTAQTVFDRMPSRNAIS-----WNLMISGYASSGDVEAARSM 258

Query: 492 VLRLPFEPDHRIWGALLGACGFCEGNAEIAE-HAAKRLLELDPLN 535
             R+  + D   W A++ A       A+I +   AK L +  PL 
Sbjct: 259 FDRMDQKKDVVSWTAMVSA------YAKIGDLDTAKELFDHMPLK 297


>gi|255585601|ref|XP_002533488.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223526650|gb|EEF28892.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 939

 Score =  288 bits (737), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 180/638 (28%), Positives = 306/638 (47%), Gaps = 53/638 (8%)

Query: 11  VVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPE 70
           VV  ++ +  Y+K   +D++  +F  +P +N V ++A+++G +QN        LF+EM +
Sbjct: 211 VVTGSALLDMYAKCKRLDDSLKIFSEIPVKNWVCWSAIIAGCVQNDEHILGLELFKEMQK 270

Query: 71  ---------------------------------------RNVVSWTAMICGLADAGRVCE 91
                                                   ++   TA +   A  G + +
Sbjct: 271 VGIGVSQSIYASVFRSCAGLSALKVGTQLHAHALKCDFGSDITVGTATLDMYAKCGSLAD 330

Query: 92  ARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVF----------NSMPIKNVISWNAM 141
           A+++F  +P+ ++  +N+++VG +RN +  EA + F          N + +    S  A 
Sbjct: 331 AQRIFNSLPKHSLQCYNAIIVGCVRNEKGFEALQFFQLLLKSGLGFNEISLSGAFSACAS 390

Query: 142 IAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWT 201
           I G ++   +    V  +     N+    S++  Y +   + E  C+F  M R++ VSW 
Sbjct: 391 IKGDLDGRQLHSLSV--KSTLRSNICVANSILDMYGKCEALSEACCMFDEMERRDAVSWN 448

Query: 202 AMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQN-LFDT 260
           A+I     NG  +E+L LF  M  +    +     S     +         E  N +  +
Sbjct: 449 AVIAAHEQNGNEEETLNLFASMLRLRMEPDQFTYGSVLKACSSQQALNSGMEIHNRIIKS 508

Query: 261 VPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLF 320
               D     ++ID Y   G +  A  +   +  +  V+W A+I+G    +   +A   F
Sbjct: 509 GLGLDSFVGGALIDMYCKCGMIEEAKKIHDRIEQQTMVSWNAIIAGFTLLKHSEDAHSFF 568

Query: 321 MEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKC 380
            EM    V P N T++++  A    A++ LG+QIH  ++K E  SD+ + + L+ MY+KC
Sbjct: 569 YEMLKMSVKPDNFTYAIVLDACANLASVGLGKQIHGQIIKLELHSDVYITSTLVDMYSKC 628

Query: 381 GVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGIL 440
           G + ++  +F    ++D V+WN+M+ G++ HGL  E L  FE M      PN  TF+ IL
Sbjct: 629 GNMQDSALVFEKAPNKDFVTWNAMICGYAQHGLGEEALGYFERMQLENVRPNHATFVSIL 688

Query: 441 SACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPD 500
            AC+H G + +G   FNAM   Y ++P  EHY  MI+++GR+G+I EA + +  +PFE D
Sbjct: 689 RACAHMGFIDKGLHYFNAMLTEYGLEPQIEHYSCMIDIIGRSGRISEALKLIQEMPFEAD 748

Query: 501 HRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRM 560
             IW  LL  C    GN EIAE A   +L+L+P ++ A ++L NIYA +G   +  ++R 
Sbjct: 749 AVIWRTLLSICKI-HGNIEIAEKATNAILQLEPEDSSACILLSNIYADAGMWGKVSEMRK 807

Query: 561 DMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
            M    ++K PGCSW+     +  FL G+K   +  EI
Sbjct: 808 MMRYNKLKKEPGCSWIEVKDEVHAFLVGNKTHPRYEEI 845



 Score =  191 bits (486), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 133/470 (28%), Positives = 235/470 (50%), Gaps = 21/470 (4%)

Query: 41  NVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMP 100
           +V   N ++  +L+   L+ A ++FE+M +R+V+S+  MI G ADAG +  A + F + P
Sbjct: 77  DVYISNCLMKMYLRCSHLNYAYKVFEKMSQRDVISYNTMISGYADAGEMNLANEFFYDTP 136

Query: 101 ERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWN-AMIAGYVECCMMGEAIVLFE 159
           +R+VVSWNSM+ G ++NGE  ++  VF  M     + ++    A  ++ C + E   L  
Sbjct: 137 KRDVVSWNSMLSGFLQNGECRKSIDVFLDMGRSEEVGFDQTTFAVVLKACSVLEDGGLGI 196

Query: 160 EME--------ERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNG 211
           ++          ++VVT ++++  Y +   +++   +F  +P KN V W+A+I G   N 
Sbjct: 197 QVHGLIVRMGFYKDVVTGSALLDMYAKCKRLDDSLKIFSEIPVKNWVCWSAIIAGCVQND 256

Query: 212 FHKESLLLFIEMK----GICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEI 267
            H   L LF EM+    G+  +      +SC  +    ++ G    A  L       D  
Sbjct: 257 EHILGLELFKEMQKVGIGVSQSIYASVFRSCAGL--SALKVGTQLHAHALKCDFG-SDIT 313

Query: 268 SWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHG 327
             T+ +D Y   G +++A  +F+++P      + A+I G V+NE   EA   F  +   G
Sbjct: 314 VGTATLDMYAKCGSLADAQRIFNSLPKHSLQCYNAIIVGCVRNEKGFEALQFFQLLLKSG 373

Query: 328 VPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAY 387
           +     + S  F A  +      GRQ+H + +K+   S++ + N ++ MY KC  +  A 
Sbjct: 374 LGFNEISLSGAFSACASIKGDLDGRQLHSLSVKSTLRSNICVANSILDMYGKCEALSEAC 433

Query: 388 NIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAG 447
            +F  M  RD VSWN+++     +G   ETL +F SML     P+  T+  +L ACS   
Sbjct: 434 CMFDEMERRDAVSWNAVIAAHEQNGNEEETLNLFASMLRLRMEPDQFTYGSVLKACSSQQ 493

Query: 448 LVSRGWELFNAMFDVYKIQPGPEHYV--SMINLLGRAGKIKEAEEFVLRL 495
            ++ G E+ N    + K   G + +V  ++I++  + G I+EA++   R+
Sbjct: 494 ALNSGMEIHNR---IIKSGLGLDSFVGGALIDMYCKCGMIEEAKKIHDRI 540



 Score =  159 bits (401), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 121/485 (24%), Positives = 228/485 (47%), Gaps = 51/485 (10%)

Query: 115 IRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMIS 174
           ++ G+   AR + +   I +V   N ++  Y+ C  +  A  +FE+M +R+V+++ +MIS
Sbjct: 59  LKPGKQAHARMIVSGF-IPDVYISNCLMKMYLRCSHLNYAYKVFEKMSQRDVISYNTMIS 117

Query: 175 GYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMK-----GICDN 229
           GY  AGE+      F   P+++VVSW +M+ GF  NG  ++S+ +F++M      G    
Sbjct: 118 GYADAGEMNLANEFFYDTPKRDVVSWNSMLSGFLQNGECRKSIDVFLDMGRSEEVGFDQT 177

Query: 230 GNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPV-RDEISWTSMIDGYLSVGQVSNAYYL 288
                +++C+ + +G    G   +   L   +   +D ++ ++++D Y    ++ ++  +
Sbjct: 178 TFAVVLKACSVLEDG----GLGIQVHGLIVRMGFYKDVVTGSALLDMYAKCKRLDDSLKI 233

Query: 289 FHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANI 348
           F  +P ++ V W+A+I+G VQN+  +    LF EM+  G+    + ++ +F +    + +
Sbjct: 234 FSEIPVKNWVCWSAIIAGCVQNDEHILGLELFKEMQKVGIGVSQSIYASVFRSCAGLSAL 293

Query: 349 DLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGF 408
            +G Q+H   +K +  SD+ +    + MYAKCG + +A  IF+++    L  +N++++G 
Sbjct: 294 KVGTQLHAHALKCDFGSDITVGTATLDMYAKCGSLADAQRIFNSLPKHSLQCYNAIIVGC 353

Query: 409 SHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELF------------ 456
             +    E L+ F+ +L+SG   N ++  G  SAC+       G +L             
Sbjct: 354 VRNEKGFEALQFFQLLLKSGLGFNEISLSGAFSACASIKGDLDGRQLHSLSVKSTLRSNI 413

Query: 457 ---NAMFDVYKIQPGPEHYVSMINLLGRAGKIK-------------EAEEF-----VLRL 495
              N++ D+Y           M + + R   +              E E       +LRL
Sbjct: 414 CVANSILDMYGKCEALSEACCMFDEMERRDAVSWNAVIAAHEQNGNEEETLNLFASMLRL 473

Query: 496 PFEPDHRIWGALLGACGFCEG---NAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRH 552
             EPD   +G++L AC   +      EI     K  L LD     A   L ++Y   G  
Sbjct: 474 RMEPDQFTYGSVLKACSSQQALNSGMEIHNRIIKSGLGLDSFVGGA---LIDMYCKCGM- 529

Query: 553 VEEHK 557
           +EE K
Sbjct: 530 IEEAK 534



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 136/570 (23%), Positives = 258/570 (45%), Gaps = 70/570 (12%)

Query: 1   MSERNHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSE 60
           MS+R+     V+   + I+ Y+  G ++ A   F   P+R+VVS+N+MLSGFLQNG   +
Sbjct: 104 MSQRD-----VISYNTMISGYADAGEMNLANEFFYDTPKRDVVSWNSMLSGFLQNGECRK 158

Query: 61  ARRLFEEMPERNVVSWTAMI-------CG-LADAGRVCEARKLFEEMP-ERNVVSWNSMV 111
           +  +F +M     V +           C  L D G   +   L   M   ++VV+ ++++
Sbjct: 159 SIDVFLDMGRSEEVGFDQTTFAVVLKACSVLEDGGLGIQVHGLIVRMGFYKDVVTGSALL 218

Query: 112 VGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEE-------- 163
               +   L+++ K+F+ +P+KN + W+A+IAG V+       + LF+EM++        
Sbjct: 219 DMYAKCKRLDDSLKIFSEIPVKNWVCWSAIIAGCVQNDEHILGLELFKEMQKVGIGVSQS 278

Query: 164 -------------------------------RNVVTWTSMISGYCRAGEVEEGYCLFRRM 192
                                           ++   T+ +  Y + G + +   +F  +
Sbjct: 279 IYASVFRSCAGLSALKVGTQLHAHALKCDFGSDITVGTATLDMYAKCGSLADAQRIFNSL 338

Query: 193 PRKNVVSWTAMIGGFAWN--GFHKESLLLFIEMKGICDNGNNCN--VQSCNSMINGYIRF 248
           P+ ++  + A+I G   N  GF        +   G+  N  + +    +C S I G +  
Sbjct: 339 PKHSLQCYNAIIVGCVRNEKGFEALQFFQLLLKSGLGFNEISLSGAFSACAS-IKGDLD- 396

Query: 249 GRLEEAQNLFDTVPVRDEIS-WTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGL 307
           GR  +  +L     +R  I    S++D Y     +S A  +F  M  RDAV+W A+I+  
Sbjct: 397 GR--QLHSLSVKSTLRSNICVANSILDMYGKCEALSEACCMFDEMERRDAVSWNAVIAAH 454

Query: 308 VQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDL 367
            QN    E   LF  M    + P   T+  +  A  +   ++ G +IH  ++K+    D 
Sbjct: 455 EQNGNEEETLNLFASMLRLRMEPDQFTYGSVLKACSSQQALNSGMEIHNRIIKSGLGLDS 514

Query: 368 ILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLES 427
            +   LI MY KCG+I+ A  I   +  + +VSWN+++ GF+    + +    F  ML+ 
Sbjct: 515 FVGGALIDMYCKCGMIEEAKKIHDRIEQQTMVSWNAIIAGFTLLKHSEDAHSFFYEMLKM 574

Query: 428 GTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYV--SMINLLGRAGKI 485
              P++ T+  +L AC++   V  G ++      + K++   + Y+  +++++  + G +
Sbjct: 575 SVKPDNFTYAIVLDACANLASVGLGKQIHG---QIIKLELHSDVYITSTLVDMYSKCGNM 631

Query: 486 KEAEEFVLRLPFEPDHRIWGALLGACGFCE 515
           +++     + P   D   W A++  CG+ +
Sbjct: 632 QDSALVFEKAP-NKDFVTWNAMI--CGYAQ 658



 Score = 82.4 bits (202), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 81/358 (22%), Positives = 150/358 (41%), Gaps = 56/358 (15%)

Query: 1   MSERNHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSE 60
           +S ++  +S +    S +  Y K   + EA  +F  M +R+ VS+NA+++   QNG   E
Sbjct: 403 LSVKSTLRSNICVANSILDMYGKCEALSEACCMFDEMERRDAVSWNAVIAAHEQNGNEEE 462

Query: 61  ARRLFEEM------PERNVVSWTAMICGLADA---------------------------- 86
              LF  M      P++         C    A                            
Sbjct: 463 TLNLFASMLRLRMEPDQFTYGSVLKACSSQQALNSGMEIHNRIIKSGLGLDSFVGGALID 522

Query: 87  -----GRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAM 141
                G + EA+K+ + + ++ +VSWN+++ G        +A   F  M   +V   N  
Sbjct: 523 MYCKCGMIEEAKKIHDRIEQQTMVSWNAIIAGFTLLKHSEDAHSFFYEMLKMSVKPDNFT 582

Query: 142 IAGYVECCMMGEAIVLFEEME--------ERNVVTWTSMISGYCRAGEVEEGYCLFRRMP 193
            A  ++ C    ++ L +++           +V   ++++  Y + G +++   +F + P
Sbjct: 583 YAIVLDACANLASVGLGKQIHGQIIKLELHSDVYITSTLVDMYSKCGNMQDSALVFEKAP 642

Query: 194 RKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCN----VQSCNSMINGYIRFG 249
            K+ V+W AMI G+A +G  +E+L  F  M+      N+      +++C  M  G+I  G
Sbjct: 643 NKDFVTWNAMICGYAQHGLGEEALGYFERMQLENVRPNHATFVSILRACAHM--GFIDKG 700

Query: 250 RLEEAQNLFDTVPVRDEIS-WTSMIDGYLSVGQVSNAYYLFHNMP-DRDAVAWTAMIS 305
            L     +     +  +I  ++ MID     G++S A  L   MP + DAV W  ++S
Sbjct: 701 -LHYFNAMLTEYGLEPQIEHYSCMIDIIGRSGRISEALKLIQEMPFEADAVIWRTLLS 757



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/108 (28%), Positives = 56/108 (51%), Gaps = 3/108 (2%)

Query: 312 LFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILEN 371
           +F   T   ++     +P    TFS +        ++  G+Q H  ++ +    D+ + N
Sbjct: 23  IFTFCTISTLQQNQTKLPTKIRTFSHIIQECSDYNSLKPGKQAHARMIVSGFIPDVYISN 82

Query: 372 CLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHG---LANE 416
           CL+ MY +C  ++ AY +F  M  RD++S+N+M+ G++  G   LANE
Sbjct: 83  CLMKMYLRCSHLNYAYKVFEKMSQRDVISYNTMISGYADAGEMNLANE 130


>gi|356501823|ref|XP_003519723.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Glycine max]
          Length = 727

 Score =  288 bits (737), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 177/631 (28%), Positives = 310/631 (49%), Gaps = 54/631 (8%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPER------ 71
           +  Y   G +  A   F+ +P + ++++NA+L G +  G  ++A   +  M +       
Sbjct: 74  VNVYVNFGSLQHAFLTFRALPHKPIIAWNAILRGLVAVGHFTKAIHFYHSMLQHGVTPDN 133

Query: 72  --------------------------------NVVSWTAMICGLADAGRVCEARKLFEEM 99
                                           NV    A+I   A  G V +AR++FEEM
Sbjct: 134 YTYPLVLKACSSLHALQLGRWVHETMHGKTKANVYVQCAVIDMFAKCGSVEDARRMFEEM 193

Query: 100 PERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFE 159
           P+R++ SW +++ G + NGE  EA  +F  M  + ++  + ++A  +  C   EA+ L  
Sbjct: 194 PDRDLASWTALICGTMWNGECLEALLLFRKMRSEGLMPDSVIVASILPACGRLEAVKLGM 253

Query: 160 EME--------ERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNG 211
            ++        E ++    ++I  YC+ G+  E + +F  M   +VVSW+ +I G++ N 
Sbjct: 254 ALQVCAVRSGFESDLYVSNAVIDMYCKCGDPLEAHRVFSHMVYSDVVSWSTLIAGYSQNC 313

Query: 212 FHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVP----VRDEI 267
            ++ES  L+I   G+ + G   N     S++    +   L++ + + + V     + D +
Sbjct: 314 LYQESYKLYI---GMINVGLATNAIVATSVLPALGKLELLKQGKEMHNFVLKEGLMSDVV 370

Query: 268 SWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHG 327
             +++I  Y + G +  A  +F    D+D + W +MI G      F  A + F  +    
Sbjct: 371 VGSALIVMYANCGSIKEAESIFECTSDKDIMVWNSMIVGYNLVGDFESAFFTFRRIWGAE 430

Query: 328 VPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAY 387
             P   T   +         +  G++IH  + K+    ++ + N LI MY+KCG ++   
Sbjct: 431 HRPNFITVVSILPICTQMGALRQGKEIHGYVTKSGLGLNVSVGNSLIDMYSKCGFLELGE 490

Query: 388 NIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAG 447
            +F  M+ R++ ++N+M+     HG   + L  +E M E G  PN VTF+ +LSACSHAG
Sbjct: 491 KVFKQMMVRNVTTYNTMISACGSHGQGEKGLAFYEQMKEEGNRPNKVTFISLLSACSHAG 550

Query: 448 LVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGAL 507
           L+ RGW L+N+M + Y I+P  EHY  M++L+GRAG +  A +F+ R+P  PD  ++G+L
Sbjct: 551 LLDRGWLLYNSMINDYGIEPNMEHYSCMVDLIGRAGDLDGAYKFITRMPMTPDANVFGSL 610

Query: 508 LGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGV 567
           LGAC       E+ E  A+R+L+L   ++  +V+L N+YA+  R  +  K+R  +  KG+
Sbjct: 611 LGACRL-HNKVELTELLAERILQLKADDSGHYVLLSNLYASGKRWEDMSKVRSMIKDKGL 669

Query: 568 RKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
            K PG SW+     I +F +        A+I
Sbjct: 670 EKKPGSSWIQVGHCIYVFHATSAFHPAFAKI 700



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 92/348 (26%), Positives = 174/348 (50%), Gaps = 20/348 (5%)

Query: 170 TSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDN 229
           + +++ Y   G ++  +  FR +P K +++W A++ G    G   +++  +  M      
Sbjct: 71  SQLVNVYVNFGSLQHAFLTFRALPHKPIIAWNAILRGLVAVGHFTKAIHFYHSMLQHGVT 130

Query: 230 GNNCN----VQSCNSMINGYIRFGR-LEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSN 284
            +N      +++C+S+    ++ GR + E  +      V  +    ++ID +   G V +
Sbjct: 131 PDNYTYPLVLKACSSL--HALQLGRWVHETMHGKTKANVYVQ---CAVIDMFAKCGSVED 185

Query: 285 AYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGA 344
           A  +F  MPDRD  +WTA+I G + N   +EA  LF +MR+ G+ P +   + +  A G 
Sbjct: 186 ARRMFEEMPDRDLASWTALICGTMWNGECLEALLLFRKMRSEGLMPDSVIVASILPACGR 245

Query: 345 TANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSM 404
              + LG  +    +++  ESDL + N +I MY KCG    A+ +FS+MV  D+VSW+++
Sbjct: 246 LEAVKLGMALQVCAVRSGFESDLYVSNAVIDMYCKCGDPLEAHRVFSHMVYSDVVSWSTL 305

Query: 405 VMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYK 464
           + G+S + L  E+ K++  M+  G   N++    +L A     L+ +G E+ N     + 
Sbjct: 306 IAGYSQNCLYQESYKLYIGMINVGLATNAIVATSVLPALGKLELLKQGKEMHN-----FV 360

Query: 465 IQPGPEHYV----SMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALL 508
           ++ G    V    ++I +    G IKEAE  +     + D  +W +++
Sbjct: 361 LKEGLMSDVVVGSALIVMYANCGSIKEAES-IFECTSDKDIMVWNSMI 407



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 75/158 (47%), Gaps = 12/158 (7%)

Query: 16  SSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPER---- 71
           S I  YSK GF++  + +F+ M  RNV +YN M+S    +G+  +    +E+M E     
Sbjct: 475 SLIDMYSKCGFLELGEKVFKQMMVRNVTTYNTMISACGSHGQGEKGLAFYEQMKEEGNRP 534

Query: 72  NVVSWTAMICGLADAGRVCEARKLFEEM-----PERNVVSWNSMVVGLIRNGELNEARKV 126
           N V++ +++   + AG +     L+  M      E N+  ++ MV  + R G+L+ A K 
Sbjct: 535 NKVTFISLLSACSHAGLLDRGWLLYNSMINDYGIEPNMEHYSCMVDLIGRAGDLDGAYKF 594

Query: 127 FNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEER 164
              MP+    +    + G    C +   + L E + ER
Sbjct: 595 ITRMPMTPDANVFGSLLG---ACRLHNKVELTELLAER 629


>gi|10092182|gb|AAG12601.1|AC068900_7 hypothetical protein; 7123-4412 [Arabidopsis thaliana]
          Length = 861

 Score =  288 bits (736), Expect = 7e-75,   Method: Compositional matrix adjust.
 Identities = 188/667 (28%), Positives = 304/667 (45%), Gaps = 120/667 (17%)

Query: 41  NVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMP 100
           +VV+ +A+L  + +  R  E+ R+F+ +PE+N VSW+A+I G      +  A K F+EM 
Sbjct: 172 DVVAASALLDMYAKGKRFVESLRVFQGIPEKNSVSWSAIIAGCVQNNLLSLALKFFKEMQ 231

Query: 101 ERNVVSWNSMVV------------------------------GLIRNGELN--------- 121
           + N     S+                                G++R   L+         
Sbjct: 232 KVNAGVSQSIYASVLRSCAALSELRLGGQLHAHALKSDFAADGIVRTATLDMYAKCDNMQ 291

Query: 122 EARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLF----------EEMEERNVVTWTS 171
           +A+ +F++    N  S+NAMI GY +     +A++LF          +E+    V    +
Sbjct: 292 DAQILFDNSENLNRQSYNAMITGYSQEEHGFKALLLFHRLMSSGLGFDEISLSGVFRACA 351

Query: 172 MISG-----------------------------YCRAGEVEEGYCLFRRMPRKNVVSWTA 202
           ++ G                             Y +   + E + +F  M R++ VSW A
Sbjct: 352 LVKGLSEGLQIYGLAIKSSLSLDVCVANAAIDMYGKCQALAEAFRVFDEMRRRDAVSWNA 411

Query: 203 MIGGFAWNGFHKESLLLFIEM-------------------------------KGICDNGN 231
           +I     NG   E+L LF+ M                                 I  +G 
Sbjct: 412 IIAAHEQNGKGYETLFLFVSMLRSRIEPDEFTFGSILKACTGGSLGYGMEIHSSIVKSGM 471

Query: 232 NCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHN 291
             N     S+I+ Y + G +EEA+ +      R  +S           G +     + + 
Sbjct: 472 ASNSSVGCSLIDMYSKCGMIEEAEKIHSRFFQRANVS-----------GTMEELEKMHNK 520

Query: 292 MPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLG 351
                 V+W ++ISG V  E   +A  LF  M   G+ P   T++ +       A+  LG
Sbjct: 521 RLQEMCVSWNSIISGYVMKEQSEDAQMLFTRMMEMGITPDKFTYATVLDTCANLASAGLG 580

Query: 352 RQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHH 411
           +QIH  ++K E +SD+ + + L+ MY+KCG + ++  +F   + RD V+WN+M+ G++HH
Sbjct: 581 KQIHAQVIKKELQSDVYICSTLVDMYSKCGDLHDSRLMFEKSLRRDFVTWNAMICGYAHH 640

Query: 412 GLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEH 471
           G   E +++FE M+     PN VTF+ IL AC+H GL+ +G E F  M   Y + P   H
Sbjct: 641 GKGEEAIQLFERMILENIKPNHVTFISILRACAHMGLIDKGLEYFYMMKRDYGLDPQLPH 700

Query: 472 YVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLEL 531
           Y +M+++LG++GK+K A E +  +PFE D  IW  LLG C     N E+AE A   LL L
Sbjct: 701 YSNMVDILGKSGKVKRALELIREMPFEADDVIWRTLLGVCTIHRNNVEVAEEATAALLRL 760

Query: 532 DPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKI 591
           DP ++ A+ +L N+YA +G   +   LR +M    ++K PGCSW+     + +FL GDK 
Sbjct: 761 DPQDSSAYTLLSNVYADAGMWEKVSDLRRNMRGFKLKKEPGCSWVELKDELHVFLVGDKA 820

Query: 592 PAQVAEI 598
             +  EI
Sbjct: 821 HPRWEEI 827



 Score =  185 bits (470), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 141/503 (28%), Positives = 240/503 (47%), Gaps = 26/503 (5%)

Query: 11  VVHLTSSITKYSKRGFIDEAKALFQLM------PQRNVVSYNAMLSGFLQNGRLSEARRL 64
           ++H+T S+ + +K+G ++  K     M      P   V+  N +L  +  +     A  +
Sbjct: 7   LLHMTRSV-ECAKQGALELGKQAHAHMIISGFRPTTFVL--NCLLQVYTNSRDFVSASMV 63

Query: 65  FEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEAR 124
           F++MP R+VVSW  MI G + +  + +A   F  MP R+VVSWNSM+ G ++NGE  ++ 
Sbjct: 64  FDKMPLRDVVSWNKMINGYSKSNDMFKANSFFNMMPVRDVVSWNSMLSGYLQNGESLKSI 123

Query: 125 KVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEME--------ERNVVTWTSMISGY 176
           +VF  M  + +       A  ++ C   E   L  ++         + +VV  ++++  Y
Sbjct: 124 EVFVDMGREGIEFDGRTFAIILKVCSFLEDTSLGMQIHGIVVRVGCDTDVVAASALLDMY 183

Query: 177 CRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMK----GICDNGNN 232
            +     E   +F+ +P KN VSW+A+I G   N     +L  F EM+    G+  +   
Sbjct: 184 AKGKRFVESLRVFQGIPEKNSVSWSAIIAGCVQNNLLSLALKFFKEMQKVNAGVSQSIYA 243

Query: 233 CNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNM 292
             ++SC ++    +R G    A  L       D I  T+ +D Y     + +A  LF N 
Sbjct: 244 SVLRSCAAL--SELRLGGQLHAHALKSDFAA-DGIVRTATLDMYAKCDNMQDAQILFDNS 300

Query: 293 PDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGR 352
            + +  ++ AMI+G  Q E   +A  LF  + + G+     + S +F A      +  G 
Sbjct: 301 ENLNRQSYNAMITGYSQEEHGFKALLLFHRLMSSGLGFDEISLSGVFRACALVKGLSEGL 360

Query: 353 QIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHG 412
           QI+ + +K+    D+ + N  I MY KC  +  A+ +F  M  RD VSWN+++     +G
Sbjct: 361 QIYGLAIKSSLSLDVCVANAAIDMYGKCQALAEAFRVFDEMRRRDAVSWNAIIAAHEQNG 420

Query: 413 LANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHY 472
              ETL +F SML S   P+  TF  IL AC+  G +  G E+ +++     +       
Sbjct: 421 KGYETLFLFVSMLRSRIEPDEFTFGSILKACT-GGSLGYGMEIHSSIVKS-GMASNSSVG 478

Query: 473 VSMINLLGRAGKIKEAEEFVLRL 495
            S+I++  + G I+EAE+   R 
Sbjct: 479 CSLIDMYSKCGMIEEAEKIHSRF 501



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 67/252 (26%), Positives = 116/252 (46%), Gaps = 39/252 (15%)

Query: 16  SSITKYSKRGFIDEAKALFQLMPQR-NV-------------------VSYNAMLSGFLQN 55
           S I  YSK G I+EA+ +     QR NV                   VS+N+++SG++  
Sbjct: 480 SLIDMYSKCGMIEEAEKIHSRFFQRANVSGTMEELEKMHNKRLQEMCVSWNSIISGYVMK 539

Query: 56  GRLSEARRLFEEM------PERNVVSWTAMICG-LADA--GRVCEARKLFEEMPERNVVS 106
            +  +A+ LF  M      P++   +     C  LA A  G+   A+ + +E+ + +V  
Sbjct: 540 EQSEDAQMLFTRMMEMGITPDKFTYATVLDTCANLASAGLGKQIHAQVIKKEL-QSDVYI 598

Query: 107 WNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNV 166
            +++V    + G+L+++R +F     ++ ++WNAMI GY       EAI LFE M   N+
Sbjct: 599 CSTLVDMYSKCGDLHDSRLMFEKSLRRDFVTWNAMICGYAHHGKGEEAIQLFERMILENI 658

Query: 167 ----VTWTSMISGYCRAGEVEEGYCLFRRMPRK-----NVVSWTAMIGGFAWNGFHKESL 217
               VT+ S++      G +++G   F  M R       +  ++ M+     +G  K +L
Sbjct: 659 KPNHVTFISILRACAHMGLIDKGLEYFYMMKRDYGLDPQLPHYSNMVDILGKSGKVKRAL 718

Query: 218 LLFIEMKGICDN 229
            L  EM    D+
Sbjct: 719 ELIREMPFEADD 730



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 56/251 (22%), Positives = 120/251 (47%), Gaps = 35/251 (13%)

Query: 12  VHLTSSITK-YSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPE 70
           V++ S++   YSK G + +++ +F+   +R+ V++NAM+ G+  +G+  EA +LFE M  
Sbjct: 596 VYICSTLVDMYSKCGDLHDSRLMFEKSLRRDFVTWNAMICGYAHHGKGEEAIQLFERMIL 655

Query: 71  RNV----VSWTAMICGLADAGRVCEARKLFEEMP-----ERNVVSWNSMVVGLIRNGELN 121
            N+    V++ +++   A  G + +  + F  M      +  +  +++MV  L ++G++ 
Sbjct: 656 ENIKPNHVTFISILRACAHMGLIDKGLEYFYMMKRDYGLDPQLPHYSNMVDILGKSGKVK 715

Query: 122 EARKVFNSMPIK-NVISWNAMIA------GYVECCMMGEAIVLFEEMEERNVVTWTSMIS 174
            A ++   MP + + + W  ++         VE  +  EA      ++ ++   +T + +
Sbjct: 716 RALELIREMPFEADDVIWRTLLGVCTIHRNNVE--VAEEATAALLRLDPQDSSAYTLLSN 773

Query: 175 GYCRAGEVEEGYCLFR-----RMPRKNVVSWTA--------MIGGFA---WNGFHKESLL 218
            Y  AG  E+   L R     ++ ++   SW          ++G  A   W   ++E  L
Sbjct: 774 VYADAGMWEKVSDLRRNMRGFKLKKEPGCSWVELKDELHVFLVGDKAHPRWEEIYEELGL 833

Query: 219 LFIEMKGICDN 229
           ++ EMK   D+
Sbjct: 834 IYSEMKPFDDS 844


>gi|222626149|gb|EEE60281.1| hypothetical protein OsJ_13335 [Oryza sativa Japonica Group]
          Length = 1135

 Score =  288 bits (736), Expect = 7e-75,   Method: Compositional matrix adjust.
 Identities = 202/659 (30%), Positives = 312/659 (47%), Gaps = 91/659 (13%)

Query: 13  HLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERN 72
           H+ S   +    G    A A        +VV     L+  +++GRL++A  LF+ MP +N
Sbjct: 19  HVPSRRRRRVCDGLCSAAAADNGCAESPDVVLECKRLNRLVKSGRLADALDLFDRMPRKN 78

Query: 73  VVSWTAMICGLADAGRVCEARKLFEEMPERNVV----SWNSMVVGLIRNGELNEARKVFN 128
           VV+WT+++ G    GR   A  +F +M E  V     + N+ +V     G L    +V +
Sbjct: 79  VVAWTSVMSGYTRNGRPEAALAMFADMVESGVAPNDFACNAALVACADLGALRAGEQV-H 137

Query: 129 SMPIKNVISWNAMIAG-----YVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVE 183
           S+ ++   + +A I       Y  C  +  A  +F+ M+  +VV +TS+IS +CR GE E
Sbjct: 138 SLAVRAGFAGDAWIGSCLIEMYSRCGSLPAAKEVFDRMDSPDVVGYTSLISAFCRNGEFE 197

Query: 184 ------------------------------------EGYCLFRRMPR-KNVVSWTAMIGG 206
                                                GY + +   R ++V S TA+I  
Sbjct: 198 LAAEALIQMLKQGLKPNEHTMTTILTACPRVLGQQIHGYLIKKIGLRSQSVYSSTALIDF 257

Query: 207 FAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVR-- 264
           ++ NG  K +       K + D+ +  NV S  SM+  YIR GRLEEA  +F  +     
Sbjct: 258 YSRNGEFKLA-------KAVFDSLHCKNVVSWCSMMQLYIRDGRLEEALQVFGDMISEGV 310

Query: 265 --DEISWTSMIDGYLSVG------------------QVSNAYY--------------LFH 290
             +E + + ++    S+G                  +VSNA                + +
Sbjct: 311 DPNEFALSIVLGACGSIGLGRQLHCSAIKHDLITDIRVSNALLSMYGRTGLVEELEAMLN 370

Query: 291 NMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDL 350
            + + D V+WT  IS   QN    +A  L  +M + G  P    FS +  +    A++D 
Sbjct: 371 KIENPDLVSWTTAISANFQNGFGEKAIALLCQMHSEGFTPNGYAFSSVLSSCADVASLDQ 430

Query: 351 GRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSH 410
           G Q HC+ +K   +S++   N LI+MY+KCG + +A   F  M + D+ SWNS++ G + 
Sbjct: 431 GMQFHCLALKLGCDSEICTGNALINMYSKCGQMGSARLAFDVMHTHDVTSWNSLIHGHAQ 490

Query: 411 HGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPE 470
           HG AN+ L+VF  M  +G  P+  TFLG+L  C+H+G+V  G   F  M D Y   P P 
Sbjct: 491 HGDANKALEVFSKMRSNGIKPDDSTFLGVLMGCNHSGMVEEGELFFRLMIDQYSFTPAPS 550

Query: 471 HYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLE 530
           HY  MI++LGR G+  EA   +  +PFEPD  IW  LL +C     N +I + AA RL+E
Sbjct: 551 HYACMIDMLGRNGRFDEALRMINDMPFEPDALIWKTLLASCKL-HRNLDIGKLAADRLME 609

Query: 531 LDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGD 589
           L   ++ ++V++ NIYA  G   +  K+R  M   GV+K  GCSW+  N  +  F S D
Sbjct: 610 LSDRDSASYVLMSNIYAMHGEWEDARKVRRRMDETGVKKDAGCSWIEINNEVHTFASRD 668


>gi|225452956|ref|XP_002279032.1| PREDICTED: pentatricopeptide repeat-containing protein At5g39350
           [Vitis vinifera]
 gi|296082987|emb|CBI22288.3| unnamed protein product [Vitis vinifera]
          Length = 676

 Score =  288 bits (736), Expect = 7e-75,   Method: Compositional matrix adjust.
 Identities = 188/618 (30%), Positives = 311/618 (50%), Gaps = 61/618 (9%)

Query: 13  HLTSSITK-YSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEM--- 68
           HL SS+   Y+  G    A+ LF  +   ++ S+NAM+  +  +G   +A  LF +M   
Sbjct: 57  HLLSSLAAAYAMFGCAPHARKLFDELRNPSLFSWNAMIRMYTNSGLSYDALGLFVQMLAS 116

Query: 69  ----PERNVVSWTAMICG---LADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELN 121
               P+     +    CG   L + G +  AR +         V  NS++   +  GE+ 
Sbjct: 117 GRRWPDNYTYPFVIKACGDYLLPEMGALIHARTVMSGFDSDAFVQ-NSLMAMYMNCGEME 175

Query: 122 EARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEM-------------------- 161
            AR+VF+ M  + ++SWN MI GY +   + EA+++F+ M                    
Sbjct: 176 VARRVFDLMRERTLVSWNTMINGYFKNGCVKEALMVFDWMIGKGIEPDCATVVSVLPVCS 235

Query: 162 ---------------EERN----VVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTA 202
                          E +N    +  W S++  Y + G ++E   +F  M +++VVSWT 
Sbjct: 236 YLKELEVGRRVHALVEVKNLGEDISVWNSLLDMYAKCGNMDEAQMIFYEMDKRDVVSWTT 295

Query: 203 MIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQS----CNSMINGYIRFGRLEEAQNLF 258
           M+ G+  NG  + +LLL   M+      N   + S    C S+ +  ++ GR      + 
Sbjct: 296 MMNGYILNGDARSALLLCQMMQFESVKPNFVTLASVLSACASLYS--LKHGRCLHGWAIR 353

Query: 259 DTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATY 318
             +   + I  T++ID Y     V+ ++ +F     +    W A+ISG + N L  +A  
Sbjct: 354 QKLE-SEVIVETALIDMYAKCNNVNLSFRVFSKTSKQRTAPWNAIISGCIHNGLSRKAIE 412

Query: 319 LFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYA 378
           LF +M    V P +AT + L  A     ++   R +H  L+++   S + +   LI +Y+
Sbjct: 413 LFKQMLMEAVDPNDATLNSLLPAYAFLTDLQQARNMHGYLIRSGFLSRIEVATILIDIYS 472

Query: 379 KCGVIDNAYNIFSNM--VSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTF 436
           KCG +++A+NIF+ +    +D+++W++++ G+  HG     + +F+ M++SG  PN +TF
Sbjct: 473 KCGSLESAHNIFNGIPKKDKDIITWSAIIAGYGMHGHGETAISLFDQMVQSGVKPNEITF 532

Query: 437 LGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLP 496
             IL ACSHAGLV  G  LF  M +  ++    +HY  +I+LLGRAG+++EA E +  + 
Sbjct: 533 TSILHACSHAGLVDEGLGLFKFMLEDNQMSLRTDHYTCVIDLLGRAGRLEEAYELIRTMA 592

Query: 497 FEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEH 556
           F P+H +WGALLG+C   E N E+ E AAK L EL+P N   +V+L NIY+A GR  +  
Sbjct: 593 FRPNHAVWGALLGSCVIHE-NVELGEVAAKWLFELEPGNTGNYVLLANIYSAVGRWRDAE 651

Query: 557 KLRMDMGLKGVRKVPGCS 574
            +R+ M   G+RK P  S
Sbjct: 652 HVRLMMNNIGLRKTPAHS 669



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 58/210 (27%), Positives = 104/210 (49%), Gaps = 14/210 (6%)

Query: 4   RNHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARR 63
           R   +S V+  T+ I  Y+K   ++ +  +F    ++    +NA++SG + NG   +A  
Sbjct: 353 RQKLESEVIVETALIDMYAKCNNVNLSFRVFSKTSKQRTAPWNAIISGCIHNGLSRKAIE 412

Query: 64  LFEEM----PERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLI---- 115
           LF++M     + N  +  +++   A    + +AR +   +     +S   +   LI    
Sbjct: 413 LFKQMLMEAVDPNDATLNSLLPAYAFLTDLQQARNMHGYLIRSGFLSRIEVATILIDIYS 472

Query: 116 RNGELNEARKVFNSMPI--KNVISWNAMIAGYVECCMMGEAIVLFEEMEERNV----VTW 169
           + G L  A  +FN +P   K++I+W+A+IAGY        AI LF++M +  V    +T+
Sbjct: 473 KCGSLESAHNIFNGIPKKDKDIITWSAIIAGYGMHGHGETAISLFDQMVQSGVKPNEITF 532

Query: 170 TSMISGYCRAGEVEEGYCLFRRMPRKNVVS 199
           TS++     AG V+EG  LF+ M   N +S
Sbjct: 533 TSILHACSHAGLVDEGLGLFKFMLEDNQMS 562



 Score = 45.1 bits (105), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 32/116 (27%), Positives = 55/116 (47%), Gaps = 4/116 (3%)

Query: 332 NATFSVLFGAAGATANIDLGRQIHC---VLMKTESESDLILENCLISMYAKCGVIDNAYN 388
            A +  L     +  +I   +QIH     L    S     L + L + YA  G   +A  
Sbjct: 18  TARYQSLLQRCTSRKSIPNTKQIHAHTITLGLLSSPYSHHLLSSLAAAYAMFGCAPHARK 77

Query: 389 IFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTH-PNSVTFLGILSAC 443
           +F  + +  L SWN+M+  +++ GL+ + L +F  ML SG   P++ T+  ++ AC
Sbjct: 78  LFDELRNPSLFSWNAMIRMYTNSGLSYDALGLFVQMLASGRRWPDNYTYPFVIKAC 133


>gi|359485832|ref|XP_002268817.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950 [Vitis vinifera]
          Length = 1736

 Score =  288 bits (736), Expect = 8e-75,   Method: Compositional matrix adjust.
 Identities = 187/637 (29%), Positives = 319/637 (50%), Gaps = 71/637 (11%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPER---NVV 74
           ++ +++ G  D+AK +F+ M  RNVVS N ++ G ++  +   A ++F EM +    N  
Sbjct: 324 VSGFARFGLTDDAKNIFEQMGVRNVVSMNGLMVGLVKQKQGEAAAKVFHEMKDLVGINSD 383

Query: 75  SWTAMICGL----------------------------------------ADAGRVCEARK 94
           S+  ++                                           A +G + +A  
Sbjct: 384 SYVVLLSAFSEFSVLEEGRRKGREVHAHVIRTGLNDNKVAIGNGLVNMYAKSGAIADACS 443

Query: 95  LFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEA 154
           +FE M E++ VSWNS++ GL +N    +A + F+ M     +  N  +   +  C     
Sbjct: 444 VFELMVEKDSVSWNSLISGLDQNECSEDAAESFHRMRRTGSMPSNFTLISTLSSCASLGW 503

Query: 155 IVLFEEME--------ERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGG 206
           I+L E++         + +V    ++++ Y   G   E   +F  MP  + VSW ++IG 
Sbjct: 504 IMLGEQIHCDGLKLGLDTDVSVSNALLALYAETGCFTECLKVFSLMPEYDQVSWNSVIGA 563

Query: 207 FAWNGFH-KESLLLFIEMK----GICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTV 261
            + +     +++  F++M     G+       N+ S  S ++       L E  +    +
Sbjct: 564 LSDSEASVSQAVKYFLQMMRGGWGL-SRVTFINILSAVSSLS-------LHEVSHQIHAL 615

Query: 262 PVR-----DEISWTSMIDGYLSVGQVSNAYYLFHNMPD-RDAVAWTAMISGLVQNELFVE 315
            ++     D     +++  Y   G+++    +F  M + RD V+W +MISG + NEL  +
Sbjct: 616 VLKYCLSDDTAIGNALLSCYGKCGEMNECEKIFARMSETRDEVSWNSMISGYIHNELLHK 675

Query: 316 ATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLIS 375
           A  L   M   G    + TF+ +  A  + A ++ G ++H   ++   ESD+++ + L+ 
Sbjct: 676 AMDLVWFMMQKGQRLDSFTFATILSACASVATLERGMEVHACGIRACLESDVVVGSALVD 735

Query: 376 MYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVT 435
           MY+KCG ID A   F  M  R++ SWNSM+ G++ HG   + LK+F  M+  G  P+ VT
Sbjct: 736 MYSKCGRIDYASRFFELMPLRNVYSWNSMISGYARHGHGEKALKLFTRMMLDGQPPDHVT 795

Query: 436 FLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRL 495
           F+G+LSACSH G V  G+E F +M +VY++ P  EH+  M++LLGRAGK+ E  +F+  +
Sbjct: 796 FVGVLSACSHVGFVEEGFEHFKSMSEVYRLSPRVEHFSCMVDLLGRAGKLDEVGDFINSM 855

Query: 496 PFEPDHRIWGALLGACGFCEG-NAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVE 554
           P +P+  IW  +LGAC    G N E+   AA+ LLEL+P NA  +V+L N+YA+  +  +
Sbjct: 856 PMKPNVLIWRTVLGACCRANGRNTELGRRAAEMLLELEPQNAVNYVLLANMYASGEKWED 915

Query: 555 EHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKI 591
             K R  M    V+K  GCSW+    G+ +F++GDK+
Sbjct: 916 VAKARTAMKEAAVKKEAGCSWVTMKDGVHVFVAGDKL 952



 Score =  158 bits (399), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 139/561 (24%), Positives = 246/561 (43%), Gaps = 75/561 (13%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEM------PER 71
           I  Y + G +  A+ LF  M  RN+V++  ++SG+ QNG+  EA   F +M      P  
Sbjct: 113 INIYVRIGDLGSAQKLFDEMSNRNLVTWACLISGYTQNGKPDEACARFRDMVRAGFIPNH 172

Query: 72  NVVSWTAMIC---------------GLADAGR------VC---------------EARKL 95
                    C               GL    R      VC               +AR +
Sbjct: 173 YAFGSALRACQESGPSGCKLGVQIHGLISKTRYGSDVVVCNVLISMYGSCLDSANDARSV 232

Query: 96  FEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIK--------NVISWNAMIAGYVE 147
           F+ +  RN +SWNS++    R G+   A  +F+SM  +        N  ++ ++I     
Sbjct: 233 FDGIGIRNSISWNSIISVYSRRGDAVSAYDLFSSMQKEGLGFSFKPNEYTFGSLIT--TA 290

Query: 148 CCMMGEAIVLFEEMEER--------NVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVS 199
           C  +   + + E+M  R        ++   ++++SG+ R G  ++   +F +M  +NVVS
Sbjct: 291 CSSVDFGLCVLEQMLARVEKSGFLQDLYVSSALVSGFARFGLTDDAKNIFEQMGVRNVVS 350

Query: 200 WTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFD 259
              ++ G       + +  +F EMK +       N  S   +++ +  F  LEE +    
Sbjct: 351 MNGLMVGLVKQKQGEAAAKVFHEMKDLV----GINSDSYVVLLSAFSEFSVLEEGRRKGR 406

Query: 260 TVP---VRDEIS------WTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQN 310
            V    +R  ++         +++ Y   G +++A  +F  M ++D+V+W ++ISGL QN
Sbjct: 407 EVHAHVIRTGLNDNKVAIGNGLVNMYAKSGAIADACSVFELMVEKDSVSWNSLISGLDQN 466

Query: 311 ELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILE 370
           E   +A   F  MR  G  P N T      +  +   I LG QIHC  +K   ++D+ + 
Sbjct: 467 ECSEDAAESFHRMRRTGSMPSNFTLISTLSSCASLGWIMLGEQIHCDGLKLGLDTDVSVS 526

Query: 371 NCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSH-HGLANETLKVFESMLESGT 429
           N L+++YA+ G       +FS M   D VSWNS++   S      ++ +K F  M+  G 
Sbjct: 527 NALLALYAETGCFTECLKVFSLMPEYDQVSWNSVIGALSDSEASVSQAVKYFLQMMRGGW 586

Query: 430 HPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAE 489
             + VTF+ ILSA S   L     ++ +A+   Y +        ++++  G+ G++ E E
Sbjct: 587 GLSRVTFINILSAVSSLSLHEVSHQI-HALVLKYCLSDDTAIGNALLSCYGKCGEMNECE 645

Query: 490 EFVLRLPFEPDHRIWGALLGA 510
           +   R+    D   W +++  
Sbjct: 646 KIFARMSETRDEVSWNSMISG 666



 Score =  154 bits (390), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 141/591 (23%), Positives = 264/591 (44%), Gaps = 85/591 (14%)

Query: 28  DEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPE----------------- 70
           ++A+++F  +  RN +S+N+++S + + G    A  LF  M +                 
Sbjct: 227 NDARSVFDGIGIRNSISWNSIISVYSRRGDAVSAYDLFSSMQKEGLGFSFKPNEYTFGSL 286

Query: 71  ----------------------------RNVVSWTAMICGLADAGRVCEARKLFEEMPER 102
                                       +++   +A++ G A  G   +A+ +FE+M  R
Sbjct: 287 ITTACSSVDFGLCVLEQMLARVEKSGFLQDLYVSSALVSGFARFGLTDDAKNIFEQMGVR 346

Query: 103 NVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNA-----MIAGYVECCMMGE---- 153
           NVVS N ++VGL++  +   A KVF+ M  K+++  N+     +++ + E  ++ E    
Sbjct: 347 NVVSMNGLMVGLVKQKQGEAAAKVFHEM--KDLVGINSDSYVVLLSAFSEFSVLEEGRRK 404

Query: 154 -----AIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFA 208
                A V+   + +  V     +++ Y ++G + +   +F  M  K+ VSW ++I G  
Sbjct: 405 GREVHAHVIRTGLNDNKVAIGNGLVNMYAKSGAIADACSVFELMVEKDSVSWNSLISGLD 464

Query: 209 WNGFHKESLLLFIEMKGICDNGNN----CNVQSCNSMINGYIRFGRLEEAQNLFDTVPVR 264
            N   +++   F  M+      +N      + SC S+  G+I  G       L   +   
Sbjct: 465 QNECSEDAAESFHRMRRTGSMPSNFTLISTLSSCASL--GWIMLGEQIHCDGLKLGLDTD 522

Query: 265 DEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFV-EATYLFMEM 323
             +S  +++  Y   G  +    +F  MP+ D V+W ++I  L  +E  V +A   F++M
Sbjct: 523 VSVS-NALLALYAETGCFTECLKVFSLMPEYDQVSWNSVIGALSDSEASVSQAVKYFLQM 581

Query: 324 RAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVI 383
              G      TF  +  A  + +  ++  QIH +++K     D  + N L+S Y KCG +
Sbjct: 582 MRGGWGLSRVTFINILSAVSSLSLHEVSHQIHALVLKYCLSDDTAIGNALLSCYGKCGEM 641

Query: 384 DNAYNIFSNMV-SRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSA 442
           +    IF+ M  +RD VSWNSM+ G+ H+ L ++ + +   M++ G   +S TF  ILSA
Sbjct: 642 NECEKIFARMSETRDEVSWNSMISGYIHNELLHKAMDLVWFMMQKGQRLDSFTFATILSA 701

Query: 443 CSHAGLVSRGWELFNAMFDVYKIQPGPEHYV----SMINLLGRAGKIKEAEEFVLRLPFE 498
           C+    + RG E+         I+   E  V    +++++  + G+I  A  F   +P  
Sbjct: 702 CASVATLERGMEVHAC-----GIRACLESDVVVGSALVDMYSKCGRIDYASRFFELMPLR 756

Query: 499 PDHRIWGALLGACGFCE-GNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAA 548
             +  W +++   G+   G+ E A     R++ LD    P HV    + +A
Sbjct: 757 NVYS-WNSMIS--GYARHGHGEKALKLFTRMM-LDG-QPPDHVTFVGVLSA 802



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 125/519 (24%), Positives = 233/519 (44%), Gaps = 70/519 (13%)

Query: 41  NVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMP 100
           N+   N +++ +++ G L  A++LF+EM  RN+V+W  +I G    G+  EA   F +M 
Sbjct: 105 NLFLSNTLINIYVRIGDLGSAQKLFDEMSNRNLVTWACLISGYTQNGKPDEACARFRDMV 164

Query: 101 ERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVIS----------WNAMIAGYVECC- 149
               +  +      +R  + +        + I  +IS           N +I+ Y  C  
Sbjct: 165 RAGFIPNHYAFGSALRACQESGPSGCKLGVQIHGLISKTRYGSDVVVCNVLISMYGSCLD 224

Query: 150 MMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRK--------NVVSWT 201
              +A  +F+ +  RN ++W S+IS Y R G+    Y LF  M ++        N  ++ 
Sbjct: 225 SANDARSVFDGIGIRNSISWNSIISVYSRRGDAVSAYDLFSSMQKEGLGFSFKPNEYTFG 284

Query: 202 AMI----GGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNL 257
           ++I        +     E +L  +E  G        ++   +++++G+ RFG  ++A+N+
Sbjct: 285 SLITTACSSVDFGLCVLEQMLARVEKSGFLQ-----DLYVSSALVSGFARFGLTDDAKNI 339

Query: 258 FDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEAT 317
           F+ + VR+ +S   ++ G +   Q   A  +FH M D         + G + ++ +V   
Sbjct: 340 FEQMGVRNVVSMNGLMVGLVKQKQGEAAAKVFHEMKD---------LVG-INSDSYVVLL 389

Query: 318 YLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTE-SESDLILENCLISM 376
             F E            FSVL            GR++H  +++T  +++ + + N L++M
Sbjct: 390 SAFSE------------FSVL------EEGRRKGREVHAHVIRTGLNDNKVAIGNGLVNM 431

Query: 377 YAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTF 436
           YAK G I +A ++F  MV +D VSWNS++ G   +  + +  + F  M  +G+ P++ T 
Sbjct: 432 YAKSGAIADACSVFELMVEKDSVSWNSLISGLDQNECSEDAAESFHRMRRTGSMPSNFTL 491

Query: 437 LGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMIN----LLGRAGKIKEAEEFV 492
           +  LS+C+     S GW +         ++ G +  VS+ N    L    G   E  +  
Sbjct: 492 ISTLSSCA-----SLGWIMLGEQIHCDGLKLGLDTDVSVSNALLALYAETGCFTECLKVF 546

Query: 493 LRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLEL 531
             +P E D   W +++GA    E +      A K  L++
Sbjct: 547 SLMP-EYDQVSWNSVIGALSDSEAS---VSQAVKYFLQM 581



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 90/312 (28%), Positives = 143/312 (45%), Gaps = 31/312 (9%)

Query: 271 SMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPP 330
           ++I+ Y+ +G + +A  LF  M +R+ V W  +ISG  QN    EA   F +M   G  P
Sbjct: 111 TLINIYVRIGDLGSAQKLFDEMSNRNLVTWACLISGYTQNGKPDEACARFRDMVRAGFIP 170

Query: 331 LNATFSVLFGAAGAT--ANIDLGRQIHCVLMKTESESDLILENCLISMYAKC-GVIDNAY 387
            +  F     A   +  +   LG QIH ++ KT   SD+++ N LISMY  C    ++A 
Sbjct: 171 NHYAFGSALRACQESGPSGCKLGVQIHGLISKTRYGSDVVVCNVLISMYGSCLDSANDAR 230

Query: 388 NIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGT----HPNSVTFLG-ILSA 442
           ++F  +  R+ +SWNS++  +S  G A     +F SM + G      PN  TF   I +A
Sbjct: 231 SVFDGIGIRNSISWNSIISVYSRRGDAVSAYDLFSSMQKEGLGFSFKPNEYTFGSLITTA 290

Query: 443 CSHAGLVSRGWELFNAMF-DVYKIQPGPEHYVS--MINLLGRAGKIKEAEEFVLRLPFEP 499
           CS    V  G  +   M   V K     + YVS  +++   R G   +A+    ++    
Sbjct: 291 CSS---VDFGLCVLEQMLARVEKSGFLQDLYVSSALVSGFARFGLTDDAKNIFEQMGVRN 347

Query: 500 DHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPL---NAPAHVVLCNIYAA-------- 548
              + G ++G     +G A     AAK   E+  L   N+ ++VVL + ++         
Sbjct: 348 VVSMNGLMVGLVKQKQGEA-----AAKVFHEMKDLVGINSDSYVVLLSAFSEFSVLEEGR 402

Query: 549 -SGRHVEEHKLR 559
             GR V  H +R
Sbjct: 403 RKGREVHAHVIR 414



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 72/247 (29%), Positives = 116/247 (46%), Gaps = 36/247 (14%)

Query: 8   KSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEE 67
           +S VV  ++ +  YSK G ID A   F+LMP RNV S+N+M+SG+ ++G   +A +LF  
Sbjct: 724 ESDVVVGSALVDMYSKCGRIDYASRFFELMPLRNVYSWNSMISGYARHGHGEKALKLFTR 783

Query: 68  M------PERNVVSWTAMICGLADAGRVCEARKLFEEMPE-----RNVVSWNSMVVGLIR 116
           M      P+   V++  ++   +  G V E  + F+ M E       V  ++ MV  L R
Sbjct: 784 MMLDGQPPDH--VTFVGVLSACSHVGFVEEGFEHFKSMSEVYRLSPRVEHFSCMVDLLGR 841

Query: 117 NGELNEARKVFNSMPIK-NVISWNAMIAGYVECCMMG--------EAIVLFEEMEERNVV 167
            G+L+E     NSMP+K NV+ W  ++     CC            A  +  E+E +N V
Sbjct: 842 AGKLDEVGDFINSMPMKPNVLIWRTVLGA---CCRANGRNTELGRRAAEMLLELEPQNAV 898

Query: 168 TWTSMISGYCRAGEVEEGYCLFRRMPRKNVV------SWTAMIGG----FAWNGFHKESL 217
            +  + + Y  +GE  E     R   ++  V      SW  M  G     A +  H E  
Sbjct: 899 NYVLLANMYA-SGEKWEDVAKARTAMKEAAVKKEAGCSWVTMKDGVHVFVAGDKLHPEKD 957

Query: 218 LLFIEMK 224
           L++ +++
Sbjct: 958 LIYDKLR 964



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 33/114 (28%), Positives = 57/114 (50%)

Query: 334 TFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNM 393
           TF  L      +   +  R++H   +K     +L L N LI++Y + G + +A  +F  M
Sbjct: 73  TFESLINRYQGSCCSEEARELHLQSIKYGFVGNLFLSNTLINIYVRIGDLGSAQKLFDEM 132

Query: 394 VSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAG 447
            +R+LV+W  ++ G++ +G  +E    F  M+ +G  PN   F   L AC  +G
Sbjct: 133 SNRNLVTWACLISGYTQNGKPDEACARFRDMVRAGFIPNHYAFGSALRACQESG 186


>gi|356502930|ref|XP_003520267.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Glycine max]
          Length = 780

 Score =  288 bits (736), Expect = 8e-75,   Method: Compositional matrix adjust.
 Identities = 179/556 (32%), Positives = 286/556 (51%), Gaps = 50/556 (8%)

Query: 92  ARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSM-------PIKNVISWNAMIAG 144
           A+ +F ++P+ N+  WN+++ G   + +  ++  +F  M       P K    +    A 
Sbjct: 125 AKNVFNQIPQPNLYCWNTLIRGYASSSDPTQSFLIFLHMLHSCSEFPNKFTFPFLFKAAS 184

Query: 145 YVECCMMGEAI--VLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTA 202
            ++   +G  +  ++ +     ++    S+I+ Y  +G  +  + +F  MP K+VVSW A
Sbjct: 185 RLKVLHLGSVLHGMVIKASLSSDLFILNSLINFYGSSGAPDLAHRVFTNMPGKDVVSWNA 244

Query: 203 MIGGFAWNGFHKESLLLFIEM----------------------------KGIC----DNG 230
           MI  FA  G   ++LLLF EM                            + IC    +NG
Sbjct: 245 MINAFALGGLPDKALLLFQEMEMKDVKPNVITMVSVLSACAKKIDLEFGRWICSYIENNG 304

Query: 231 NNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFH 290
              ++   N+M++ Y++ G + +A++LF+ +  +D +SWT+M+DG+  +G    A+ +F 
Sbjct: 305 FTEHLILNNAMLDMYVKCGCINDAKDLFNKMSEKDIVSWTTMLDGHAKLGNYDEAHCIFD 364

Query: 291 NMPDRDAVAWTAMISGLVQNELFVEATYLFMEMR-AHGVPPLNATFSVLFGAAGATANID 349
            MP +   AW A+IS   QN     A  LF EM+ +    P   T      A+     ID
Sbjct: 365 AMPHKWTAAWNALISAYEQNGKPRVALSLFHEMQLSKDAKPDEVTLICALCASAQLGAID 424

Query: 350 LGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFS 409
            G  IH  + K +   +  L   L+ MYAKCG ++ A  +F  +  +D+  W++M+   +
Sbjct: 425 FGHWIHVYIKKHDINLNCHLATSLLDMYAKCGNLNKAMEVFHAVERKDVYVWSAMIGALA 484

Query: 410 HHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGP 469
            +G     L +F SMLE+   PN+VTF  IL AC+HAGLV+ G +LF  M  +Y I P  
Sbjct: 485 MYGQGKAALDLFSSMLEAYIKPNAVTFTNILCACNHAGLVNEGEQLFEQMEPLYGIVPQI 544

Query: 470 EHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLL 529
           +HYV ++++ GRAG +++A  F+ ++P  P   +WGALLGAC    GN E+AE A + LL
Sbjct: 545 QHYVCVVDIFGRAGLLEKAASFIEKMPIPPTAAVWGALLGACSR-HGNVELAELAYQNLL 603

Query: 530 ELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGD 589
           EL+P N  A V+L NIYA +G   +   LR  M    V+K P CS +  NG +  FL GD
Sbjct: 604 ELEPCNHGAFVLLSNIYAKAGDWEKVSNLRKLMRDSDVKKEPWCSSIDVNGIVHEFLVGD 663

Query: 590 -------KIPAQVAEI 598
                  KI +++ EI
Sbjct: 664 NSHPFSQKIYSKLDEI 679



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 108/471 (22%), Positives = 186/471 (39%), Gaps = 126/471 (26%)

Query: 14  LTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPER-- 71
           L S I  Y   G  D A  +F  MP ++VVS+NAM++ F   G   +A  LF+EM  +  
Sbjct: 211 LNSLINFYGSSGAPDLAHRVFTNMPGKDVVSWNAMINAFALGGLPDKALLLFQEMEMKDV 270

Query: 72  --NVVSWTAMICGLA-----------------------------------DAGRVCEARK 94
             NV++  +++   A                                     G + +A+ 
Sbjct: 271 KPNVITMVSVLSACAKKIDLEFGRWICSYIENNGFTEHLILNNAMLDMYVKCGCINDAKD 330

Query: 95  LFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEA 154
           LF +M E+++VSW +M+ G  + G  +EA  +F++MP K   +WNA+I+ Y +      A
Sbjct: 331 LFNKMSEKDIVSWTTMLDGHAKLGNYDEAHCIFDAMPHKWTAAWNALISAYEQNGKPRVA 390

Query: 155 IVLFEEME-----ERNVVT------------------W-----------------TSMIS 174
           + LF EM+     + + VT                  W                 TS++ 
Sbjct: 391 LSLFHEMQLSKDAKPDEVTLICALCASAQLGAIDFGHWIHVYIKKHDINLNCHLATSLLD 450

Query: 175 GYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCN 234
            Y + G + +   +F  + RK+V  W+AMIG  A  G  K +L LF              
Sbjct: 451 MYAKCGNLNKAMEVFHAVERKDVYVWSAMIGALAMYGQGKAALDLF-------------- 496

Query: 235 VQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPD 294
               +SM+  YI+                 + +++T+++      G V+    LF  M  
Sbjct: 497 ----SSMLEAYIK----------------PNAVTFTNILCACNHAGLVNEGEQLFEQMEP 536

Query: 295 RDAVA-----WTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANID 349
              +      +  ++    +  L  +A     +M    +PP  A +  L GA     N++
Sbjct: 537 LYGIVPQIQHYVCVVDIFGRAGLLEKAASFIEKMP---IPPTAAVWGALLGACSRHGNVE 593

Query: 350 LGRQIHCVLMKTE--SESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDL 398
           L    +  L++ E  +    +L   L ++YAK G  +   N+   M   D+
Sbjct: 594 LAELAYQNLLELEPCNHGAFVL---LSNIYAKAGDWEKVSNLRKLMRDSDV 641



 Score = 95.1 bits (235), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 87/401 (21%), Positives = 157/401 (39%), Gaps = 75/401 (18%)

Query: 148 CCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGF 207
           C  +  A  +F ++ + N+  W ++I GY  + +  + + +F  M    + S +     F
Sbjct: 119 CSCLIYAKNVFNQIPQPNLYCWNTLIRGYASSSDPTQSFLIFLHM----LHSCSEFPNKF 174

Query: 208 AWNGFHKESLLLFIEMKGICDNGN------NCNVQSCNSMINGYIRFGRLEEAQNLFDTV 261
            +    K +  L +   G   +G       + ++   NS+IN Y   G  + A  +F  +
Sbjct: 175 TFPFLFKAASRLKVLHLGSVLHGMVIKASLSSDLFILNSLINFYGSSGAPDLAHRVFTNM 234

Query: 262 PVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFM 321
           P +D +SW +MI+ +   G           +PD+                    A  LF 
Sbjct: 235 PGKDVVSWNAMINAFALGG-----------LPDK--------------------ALLLFQ 263

Query: 322 EMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCG 381
           EM    V P   T   +  A     +++ GR I   +        LIL N ++ MY KCG
Sbjct: 264 EMEMKDVKPNVITMVSVLSACAKKIDLEFGRWICSYIENNGFTEHLILNNAMLDMYVKCG 323

Query: 382 VIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESM----------------- 424
            I++A ++F+ M  +D+VSW +M+ G +  G  +E   +F++M                 
Sbjct: 324 CINDAKDLFNKMSEKDIVSWTTMLDGHAKLGNYDEAHCIFDAMPHKWTAAWNALISAYEQ 383

Query: 425 ---------------LESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGP 469
                          L     P+ VT +  L A +  G +  G    +     + I    
Sbjct: 384 NGKPRVALSLFHEMQLSKDAKPDEVTLICALCASAQLGAIDFG-HWIHVYIKKHDINLNC 442

Query: 470 EHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGA 510
               S++++  + G + +A E V       D  +W A++GA
Sbjct: 443 HLATSLLDMYAKCGNLNKAME-VFHAVERKDVYVWSAMIGA 482



 Score = 75.1 bits (183), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 58/205 (28%), Positives = 99/205 (48%), Gaps = 18/205 (8%)

Query: 1   MSERNHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSE 60
           MSE++     +V  T+ +  ++K G  DEA  +F  MP +   ++NA++S + QNG+   
Sbjct: 335 MSEKD-----IVSWTTMLDGHAKLGNYDEAHCIFDAMPHKWTAAWNALISAYEQNGKPRV 389

Query: 61  ARRLFEEM-----PERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLI 115
           A  LF EM      + + V+    +C  A  G +     +   + + ++     +   L+
Sbjct: 390 ALSLFHEMQLSKDAKPDEVTLICALCASAQLGAIDFGHWIHVYIKKHDINLNCHLATSLL 449

Query: 116 ----RNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEER----NVV 167
               + G LN+A +VF+++  K+V  W+AMI           A+ LF  M E     N V
Sbjct: 450 DMYAKCGNLNKAMEVFHAVERKDVYVWSAMIGALAMYGQGKAALDLFSSMLEAYIKPNAV 509

Query: 168 TWTSMISGYCRAGEVEEGYCLFRRM 192
           T+T+++     AG V EG  LF +M
Sbjct: 510 TFTNILCACNHAGLVNEGEQLFEQM 534



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 41/164 (25%), Positives = 76/164 (46%), Gaps = 9/164 (5%)

Query: 352 RQIHCVLMKTESESDLILENCLISMYA--KCGVIDNAYNIFSNMVSRDLVSWNSMVMGFS 409
           +QIH  +++T    D    + L++ YA   C  +  A N+F+ +   +L  WN+++ G++
Sbjct: 89  KQIHAHMLRTSRFCDPYTASKLLTAYAISSCSCLIYAKNVFNQIPQPNLYCWNTLIRGYA 148

Query: 410 HHGLANETLKVFESMLESGTH-PNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPG 468
                 ++  +F  ML S +  PN  TF  +  A S   ++  G  + + M  V K    
Sbjct: 149 SSSDPTQSFLIFLHMLHSCSEFPNKFTFPFLFKAASRLKVLHLG-SVLHGM--VIKASLS 205

Query: 469 PEHYV--SMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGA 510
            + ++  S+IN  G +G    A      +P + D   W A++ A
Sbjct: 206 SDLFILNSLINFYGSSGAPDLAHRVFTNMPGK-DVVSWNAMINA 248


>gi|356509350|ref|XP_003523413.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g77010, mitochondrial-like [Glycine max]
          Length = 678

 Score =  288 bits (736), Expect = 8e-75,   Method: Compositional matrix adjust.
 Identities = 177/631 (28%), Positives = 294/631 (46%), Gaps = 77/631 (12%)

Query: 21  YSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMI 80
           YS+   + +A  LF  MPQ N  S+N ++   L +G    A  LF  MP +   SW  ++
Sbjct: 46  YSRCRNLQDASHLFDEMPQTNSFSWNTLVQAHLNSGHTHSALHLFNAMPHKTHFSWNMVV 105

Query: 81  CGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIK------- 133
              A +G +  A  LF  MP +N + WNS++    R+G   +A  +F SM +        
Sbjct: 106 SAFAKSGHLQLAHSLFNAMPSKNHLVWNSIIHSYSRHGHPGKALFLFKSMNLDPSQIVYR 165

Query: 134 -------------------------------------NVISWNAMIAGYVECCMMGEAIV 156
                                                + +  +++I  Y +C  +  A  
Sbjct: 166 DAFVLATALGACADSLALNCGKQVHARVFVDGMGLELDRVLCSSLINLYGKCGDLDSAAR 225

Query: 157 LFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKES 216
           +   + + +  + +++ISGY  AG + E   +F        V W ++I G+  NG   E+
Sbjct: 226 IVSFVRDVDEFSLSALISGYANAGRMREARSVFDSKVDPCAVLWNSIISGYVSNGEEVEA 285

Query: 217 LLLFIEM--KGI------------------------------CDNGNNCNVQSCNSMING 244
           + LF  M   G+                              C  G   ++   +S+++ 
Sbjct: 286 VNLFSAMLRNGVQGDASAVANILSAASGLLVVELVKQMHVYACKAGVTHDIVVASSLLDA 345

Query: 245 YIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMI 304
           Y +     EA  LF  +   D I   +MI  Y + G++ +A  +F+ MP +  ++W +++
Sbjct: 346 YSKCQSPCEACKLFSELKEYDTILLNTMITVYSNCGRIEDAKLIFNTMPSKTLISWNSIL 405

Query: 305 SGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESE 364
            GL QN    EA  +F +M    +     +F+ +  A    ++++LG Q+    +    E
Sbjct: 406 VGLTQNACPSEALNIFSQMNKLDLKMDRFSFASVISACACRSSLELGEQVFGKAITIGLE 465

Query: 365 SDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESM 424
           SD I+   L+  Y KCG ++    +F  MV  D VSWN+M+MG++ +G   E L +F  M
Sbjct: 466 SDQIISTSLVDFYCKCGFVEIGRKVFDGMVKTDEVSWNTMLMGYATNGYGIEALTLFCEM 525

Query: 425 LESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGK 484
              G  P+++TF G+LSAC H+GLV  G  LF+ M   Y I PG EH+  M++L  RAG 
Sbjct: 526 TYGGVWPSAITFTGVLSACDHSGLVEEGRNLFHTMKHSYNINPGIEHFSCMVDLFARAGY 585

Query: 485 IKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCN 544
            +EA + +  +PF+ D  +W ++L  C    GN  I + AA+++++L+P N  A++ L N
Sbjct: 586 FEEAMDLIEEMPFQADANMWLSVLRGC-IAHGNKTIGKMAAEQIIQLEPENTGAYIQLSN 644

Query: 545 IYAASGRHVEEHKLRMDMGLKGVRKVPGCSW 575
           I A+SG       +R  M  K  +K+PGCSW
Sbjct: 645 ILASSGDWEGSALVRELMRDKHFQKIPGCSW 675



 Score =  138 bits (348), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 108/418 (25%), Positives = 189/418 (45%), Gaps = 19/418 (4%)

Query: 15  TSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVV 74
           +S I  Y K G +D A  +   +   +  S +A++SG+   GR+ EAR +F+   +   V
Sbjct: 208 SSLINLYGKCGDLDSAARIVSFVRDVDEFSLSALISGYANAGRMREARSVFDSKVDPCAV 267

Query: 75  SWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNG------ELNEARKVF- 127
            W ++I G    G   EA  LF  M    V    S V  ++         EL +   V+ 
Sbjct: 268 LWNSIISGYVSNGEEVEAVNLFSAMLRNGVQGDASAVANILSAASGLLVVELVKQMHVYA 327

Query: 128 -NSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGY 186
             +    +++  ++++  Y +C    EA  LF E++E + +   +MI+ Y   G +E+  
Sbjct: 328 CKAGVTHDIVVASSLLDAYSKCQSPCEACKLFSELKEYDTILLNTMITVYSNCGRIEDAK 387

Query: 187 CLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYI 246
            +F  MP K ++SW +++ G   N    E+L +F +M  +       +  S  S+I+   
Sbjct: 388 LIFNTMPSKTLISWNSILVGLTQNACPSEALNIFSQMNKL---DLKMDRFSFASVISACA 444

Query: 247 RFGRLEEAQNLFDTVPV----RDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTA 302
               LE  + +F          D+I  TS++D Y   G V     +F  M   D V+W  
Sbjct: 445 CRSSLELGEQVFGKAITIGLESDQIISTSLVDFYCKCGFVEIGRKVFDGMVKTDEVSWNT 504

Query: 303 MISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTE 362
           M+ G   N   +EA  LF EM   GV P   TF+ +  A   +  ++ GR +   +  + 
Sbjct: 505 MLMGYATNGYGIEALTLFCEMTYGGVWPSAITFTGVLSACDHSGLVEEGRNLFHTMKHSY 564

Query: 363 SESDLILE-NCLISMYAKCGVIDNAYNIFSNM-VSRDLVSWNSMVMGFSHHGLANETL 418
           + +  I   +C++ ++A+ G  + A ++   M    D   W S++ G   HG  N+T+
Sbjct: 565 NINPGIEHFSCMVDLFARAGYFEEAMDLIEEMPFQADANMWLSVLRGCIAHG--NKTI 620



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 90/379 (23%), Positives = 158/379 (41%), Gaps = 87/379 (22%)

Query: 14  LTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEM----- 68
           L++ I+ Y+  G + EA+++F        V +N+++SG++ NG   EA  LF  M     
Sbjct: 238 LSALISGYANAGRMREARSVFDSKVDPCAVLWNSIISGYVSNGEEVEAVNLFSAMLRNGV 297

Query: 69  ----------------------------------PERNVVSWTAMICGLADAGRVCEARK 94
                                                ++V  ++++   +     CEA K
Sbjct: 298 QGDASAVANILSAASGLLVVELVKQMHVYACKAGVTHDIVVASSLLDAYSKCQSPCEACK 357

Query: 95  LFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEA 154
           LF E+ E + +  N+M+      G + +A+ +FN+MP K +ISWN+++ G  +     EA
Sbjct: 358 LFSELKEYDTILLNTMITVYSNCGRIEDAKLIFNTMPSKTLISWNSILVGLTQNACPSEA 417

Query: 155 IVLFEEME---------------------------------------ERNVVTWTSMISG 175
           + +F +M                                        E + +  TS++  
Sbjct: 418 LNIFSQMNKLDLKMDRFSFASVISACACRSSLELGEQVFGKAITIGLESDQIISTSLVDF 477

Query: 176 YCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNV 235
           YC+ G VE G  +F  M + + VSW  M+ G+A NG+  E+L LF EM      G   + 
Sbjct: 478 YCKCGFVEIGRKVFDGMVKTDEVSWNTMLMGYATNGYGIEALTLFCEMTY---GGVWPSA 534

Query: 236 QSCNSMINGYIRFGRLEEAQNLFDTVPVRDEIS-----WTSMIDGYLSVGQVSNAYYLFH 290
            +   +++     G +EE +NLF T+     I+     ++ M+D +   G    A  L  
Sbjct: 535 ITFTGVLSACDHSGLVEEGRNLFHTMKHSYNINPGIEHFSCMVDLFARAGYFEEAMDLIE 594

Query: 291 NMP-DRDAVAWTAMISGLV 308
            MP   DA  W +++ G +
Sbjct: 595 EMPFQADANMWLSVLRGCI 613



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 95/375 (25%), Positives = 164/375 (43%), Gaps = 67/375 (17%)

Query: 232 NCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHN 291
           N +V   N ++  Y R   L++A +LFD +P  +  SW +++  +L+ G   +A +LF+ 
Sbjct: 33  NSSVAVANRLLQLYSRCRNLQDASHLFDEMPQTNSFSWNTLVQAHLNSGHTHSALHLFNA 92

Query: 292 MPDRDAVAWTAMISGLVQNELFVEATYLFMEMRA---------------HGVP------- 329
           MP +   +W  ++S   ++     A  LF  M +               HG P       
Sbjct: 93  MPHKTHFSWNMVVSAFAKSGHLQLAHSLFNAMPSKNHLVWNSIIHSYSRHGHPGKALFLF 152

Query: 330 ------PLNATFS---VLFGAAGATAN---IDLGRQIHCVLMKTES--ESDLILENCLIS 375
                 P    +    VL  A GA A+   ++ G+Q+H  +       E D +L + LI+
Sbjct: 153 KSMNLDPSQIVYRDAFVLATALGACADSLALNCGKQVHARVFVDGMGLELDRVLCSSLIN 212

Query: 376 MYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVT 435
           +Y KCG +D+A  I S +   D  S ++++ G+++ G   E   VF+S ++    P +V 
Sbjct: 213 LYGKCGDLDSAARIVSFVRDVDEFSLSALISGYANAGRMREARSVFDSKVD----PCAVL 268

Query: 436 FLGILSACSHAGLVSRGWE-----LFNAMFDVYKIQPGPEHYVSMI-NLLGRAGK----- 484
           +  I+S     G VS G E     LF+AM     ++ G +   S + N+L  A       
Sbjct: 269 WNSIIS-----GYVSNGEEVEAVNLFSAM-----LRNGVQGDASAVANILSAASGLLVVE 318

Query: 485 -IKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLC 543
            +K+   +  +     D  +  +LL A   C+   E    A K   EL   +      + 
Sbjct: 319 LVKQMHVYACKAGVTHDIVVASSLLDAYSKCQSPCE----ACKLFSELKEYDTILLNTMI 374

Query: 544 NIYAASGRHVEEHKL 558
            +Y+  GR +E+ KL
Sbjct: 375 TVYSNCGR-IEDAKL 388



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/171 (26%), Positives = 77/171 (45%), Gaps = 20/171 (11%)

Query: 351 GRQIHCVLMKTES-ESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFS 409
           GRQ+H   +KT    S + + N L+ +Y++C  + +A ++F  M   +  SWN++V    
Sbjct: 19  GRQLHVAFLKTGILNSSVAVANRLLQLYSRCRNLQDASHLFDEMPQTNSFSWNTLVQAHL 78

Query: 410 HHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGP 469
           + G  +  L +F +M     H    ++  ++SA + +G +     LFNAM       P  
Sbjct: 79  NSGHTHSALHLFNAM----PHKTHFSWNMVVSAFAKSGHLQLAHSLFNAM-------PSK 127

Query: 470 EHYV--SMINLLGRAGKIKEAEEFVLRLPFEP------DHRIWGALLGACG 512
            H V  S+I+   R G   +A      +  +P      D  +    LGAC 
Sbjct: 128 NHLVWNSIIHSYSRHGHPGKALFLFKSMNLDPSQIVYRDAFVLATALGACA 178


>gi|334185027|ref|NP_186882.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546764|sp|Q9FWA6.2|PP207_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g02330
 gi|332640272|gb|AEE73793.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 903

 Score =  288 bits (736), Expect = 8e-75,   Method: Compositional matrix adjust.
 Identities = 188/667 (28%), Positives = 304/667 (45%), Gaps = 120/667 (17%)

Query: 41  NVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMP 100
           +VV+ +A+L  + +  R  E+ R+F+ +PE+N VSW+A+I G      +  A K F+EM 
Sbjct: 214 DVVAASALLDMYAKGKRFVESLRVFQGIPEKNSVSWSAIIAGCVQNNLLSLALKFFKEMQ 273

Query: 101 ERNVVSWNSMVV------------------------------GLIRNGELN--------- 121
           + N     S+                                G++R   L+         
Sbjct: 274 KVNAGVSQSIYASVLRSCAALSELRLGGQLHAHALKSDFAADGIVRTATLDMYAKCDNMQ 333

Query: 122 EARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLF----------EEMEERNVVTWTS 171
           +A+ +F++    N  S+NAMI GY +     +A++LF          +E+    V    +
Sbjct: 334 DAQILFDNSENLNRQSYNAMITGYSQEEHGFKALLLFHRLMSSGLGFDEISLSGVFRACA 393

Query: 172 MISG-----------------------------YCRAGEVEEGYCLFRRMPRKNVVSWTA 202
           ++ G                             Y +   + E + +F  M R++ VSW A
Sbjct: 394 LVKGLSEGLQIYGLAIKSSLSLDVCVANAAIDMYGKCQALAEAFRVFDEMRRRDAVSWNA 453

Query: 203 MIGGFAWNGFHKESLLLFIEM-------------------------------KGICDNGN 231
           +I     NG   E+L LF+ M                                 I  +G 
Sbjct: 454 IIAAHEQNGKGYETLFLFVSMLRSRIEPDEFTFGSILKACTGGSLGYGMEIHSSIVKSGM 513

Query: 232 NCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHN 291
             N     S+I+ Y + G +EEA+ +      R  +S           G +     + + 
Sbjct: 514 ASNSSVGCSLIDMYSKCGMIEEAEKIHSRFFQRANVS-----------GTMEELEKMHNK 562

Query: 292 MPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLG 351
                 V+W ++ISG V  E   +A  LF  M   G+ P   T++ +       A+  LG
Sbjct: 563 RLQEMCVSWNSIISGYVMKEQSEDAQMLFTRMMEMGITPDKFTYATVLDTCANLASAGLG 622

Query: 352 RQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHH 411
           +QIH  ++K E +SD+ + + L+ MY+KCG + ++  +F   + RD V+WN+M+ G++HH
Sbjct: 623 KQIHAQVIKKELQSDVYICSTLVDMYSKCGDLHDSRLMFEKSLRRDFVTWNAMICGYAHH 682

Query: 412 GLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEH 471
           G   E +++FE M+     PN VTF+ IL AC+H GL+ +G E F  M   Y + P   H
Sbjct: 683 GKGEEAIQLFERMILENIKPNHVTFISILRACAHMGLIDKGLEYFYMMKRDYGLDPQLPH 742

Query: 472 YVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLEL 531
           Y +M+++LG++GK+K A E +  +PFE D  IW  LLG C     N E+AE A   LL L
Sbjct: 743 YSNMVDILGKSGKVKRALELIREMPFEADDVIWRTLLGVCTIHRNNVEVAEEATAALLRL 802

Query: 532 DPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKI 591
           DP ++ A+ +L N+YA +G   +   LR +M    ++K PGCSW+     + +FL GDK 
Sbjct: 803 DPQDSSAYTLLSNVYADAGMWEKVSDLRRNMRGFKLKKEPGCSWVELKDELHVFLVGDKA 862

Query: 592 PAQVAEI 598
             +  EI
Sbjct: 863 HPRWEEI 869



 Score =  184 bits (468), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 132/462 (28%), Positives = 221/462 (47%), Gaps = 17/462 (3%)

Query: 46  NAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVV 105
           N +L  +  +     A  +F++MP R+VVSW  MI G + +  + +A   F  MP R+VV
Sbjct: 87  NCLLQVYTNSRDFVSASMVFDKMPLRDVVSWNKMINGYSKSNDMFKANSFFNMMPVRDVV 146

Query: 106 SWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEME--- 162
           SWNSM+ G ++NGE  ++ +VF  M  + +       A  ++ C   E   L  ++    
Sbjct: 147 SWNSMLSGYLQNGESLKSIEVFVDMGREGIEFDGRTFAIILKVCSFLEDTSLGMQIHGIV 206

Query: 163 -----ERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESL 217
                + +VV  ++++  Y +     E   +F+ +P KN VSW+A+I G   N     +L
Sbjct: 207 VRVGCDTDVVAASALLDMYAKGKRFVESLRVFQGIPEKNSVSWSAIIAGCVQNNLLSLAL 266

Query: 218 LLFIEMK----GICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMI 273
             F EM+    G+  +     ++SC ++    +R G    A  L       D I  T+ +
Sbjct: 267 KFFKEMQKVNAGVSQSIYASVLRSCAAL--SELRLGGQLHAHALKSDFAA-DGIVRTATL 323

Query: 274 DGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNA 333
           D Y     + +A  LF N  + +  ++ AMI+G  Q E   +A  LF  + + G+     
Sbjct: 324 DMYAKCDNMQDAQILFDNSENLNRQSYNAMITGYSQEEHGFKALLLFHRLMSSGLGFDEI 383

Query: 334 TFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNM 393
           + S +F A      +  G QI+ + +K+    D+ + N  I MY KC  +  A+ +F  M
Sbjct: 384 SLSGVFRACALVKGLSEGLQIYGLAIKSSLSLDVCVANAAIDMYGKCQALAEAFRVFDEM 443

Query: 394 VSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGW 453
             RD VSWN+++     +G   ETL +F SML S   P+  TF  IL AC+  G +  G 
Sbjct: 444 RRRDAVSWNAIIAAHEQNGKGYETLFLFVSMLRSRIEPDEFTFGSILKACT-GGSLGYGM 502

Query: 454 ELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRL 495
           E+ +++     +        S+I++  + G I+EAE+   R 
Sbjct: 503 EIHSSIVKS-GMASNSSVGCSLIDMYSKCGMIEEAEKIHSRF 543



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 149/622 (23%), Positives = 268/622 (43%), Gaps = 98/622 (15%)

Query: 7   PKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFE 66
           P   VV     I  YSK   + +A + F +MP R+VVS+N+MLSG+LQNG   ++  +F 
Sbjct: 110 PLRDVVSWNKMINGYSKSNDMFKANSFFNMMPVRDVVSWNSMLSGYLQNGESLKSIEVFV 169

Query: 67  EMP---------------------------------------ERNVVSWTAMICGLADAG 87
           +M                                        + +VV+ +A++   A   
Sbjct: 170 DMGREGIEFDGRTFAIILKVCSFLEDTSLGMQIHGIVVRVGCDTDVVAASALLDMYAKGK 229

Query: 88  RVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVE 147
           R  E+ ++F+ +PE+N VSW++++ G ++N  L+ A K F  M   N     ++ A  + 
Sbjct: 230 RFVESLRVFQGIPEKNSVSWSAIIAGCVQNNLLSLALKFFKEMQKVNAGVSQSIYASVLR 289

Query: 148 CCMMGEAIVLFEEMEERNV--------VTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVS 199
            C     + L  ++    +        +  T+ +  Y +   +++   LF      N  S
Sbjct: 290 SCAALSELRLGGQLHAHALKSDFAADGIVRTATLDMYAKCDNMQDAQILFDNSENLNRQS 349

Query: 200 WTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFD 259
           + AMI G++      ++LLLF     +  +G   +  S + +         L E   ++ 
Sbjct: 350 YNAMITGYSQEEHGFKALLLF---HRLMSSGLGFDEISLSGVFRACALVKGLSEGLQIY- 405

Query: 260 TVPVRDEISW-----TSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFV 314
            + ++  +S       + ID Y     ++ A+ +F  M  RDAV+W A+I+   QN    
Sbjct: 406 GLAIKSSLSLDVCVANAAIDMYGKCQALAEAFRVFDEMRRRDAVSWNAIIAAHEQNGKGY 465

Query: 315 EATYLFMEMRAHGVPPLNATF-SVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCL 373
           E  +LF+ M    + P   TF S+L    G +  +  G +IH  ++K+   S+  +   L
Sbjct: 466 ETLFLFVSMLRSRIEPDEFTFGSILKACTGGS--LGYGMEIHSSIVKSGMASNSSVGCSL 523

Query: 374 ISMYAKCGVIDNAYNIFSNMVSRD--------------------LVSWNSMVMGFSHHGL 413
           I MY+KCG+I+ A  I S    R                      VSWNS++ G+     
Sbjct: 524 IDMYSKCGMIEEAEKIHSRFFQRANVSGTMEELEKMHNKRLQEMCVSWNSIISGYVMKEQ 583

Query: 414 ANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYV 473
           + +   +F  M+E G  P+  T+  +L  C++      G ++      V K +   + Y+
Sbjct: 584 SEDAQMLFTRMMEMGITPDKFTYATVLDTCANLASAGLGKQIHA---QVIKKELQSDVYI 640

Query: 474 --SMINLLGRAGKIKEAEEFVLRLPFEP----DHRIWGALLGACGFC-EGNAEIAEHAAK 526
             +++++  + G + ++     RL FE     D   W A++  CG+   G  E A    +
Sbjct: 641 CSTLVDMYSKCGDLHDS-----RLMFEKSLRRDFVTWNAMI--CGYAHHGKGEEAIQLFE 693

Query: 527 RLLELDPLNAPAHVVLCNIYAA 548
           R++ L+ +  P HV   +I  A
Sbjct: 694 RMI-LENIK-PNHVTFISILRA 713



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 83/366 (22%), Positives = 152/366 (41%), Gaps = 85/366 (23%)

Query: 16  SSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEM------P 69
           ++I  Y K   + EA  +F  M +R+ VS+NA+++   QNG+  E   LF  M      P
Sbjct: 422 AAIDMYGKCQALAEAFRVFDEMRRRDAVSWNAIIAAHEQNGKGYETLFLFVSMLRSRIEP 481

Query: 70  ER----------------------------NVVSWTAMICGLAD----AGRVCEARKLFE 97
           +                              + S +++ C L D     G + EA K+  
Sbjct: 482 DEFTFGSILKACTGGSLGYGMEIHSSIVKSGMASNSSVGCSLIDMYSKCGMIEEAEKIHS 541

Query: 98  EMPER-NV-------------------VSWNSMVVGLIRNGELNEARKVFNSMPIKNVIS 137
              +R NV                   VSWNS++ G +   +  +A+ +F  M    +  
Sbjct: 542 RFFQRANVSGTMEELEKMHNKRLQEMCVSWNSIISGYVMKEQSEDAQMLFTRMMEMGITP 601

Query: 138 WNAMIAGYVECCM------MGEAI---VLFEEMEERNVVTWTSMISGYCRAGEVEEGYCL 188
                A  ++ C       +G+ I   V+ +E++  +V   ++++  Y + G++ +   +
Sbjct: 602 DKFTYATVLDTCANLASAGLGKQIHAQVIKKELQS-DVYICSTLVDMYSKCGDLHDSRLM 660

Query: 189 FRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNV------QSCNSM- 241
           F +  R++ V+W AMI G+A +G  +E++ LF  M  I +N    +V      ++C  M 
Sbjct: 661 FEKSLRRDFVTWNAMICGYAHHGKGEEAIQLFERM--ILENIKPNHVTFISILRACAHMG 718

Query: 242 --INGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMP-DRDAV 298
               G   F  ++    L   +P      +++M+D     G+V  A  L   MP + D V
Sbjct: 719 LIDKGLEYFYMMKRDYGLDPQLP-----HYSNMVDILGKSGKVKRALELIREMPFEADDV 773

Query: 299 AWTAMI 304
            W  ++
Sbjct: 774 IWRTLL 779



 Score = 52.4 bits (124), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 66/316 (20%), Positives = 120/316 (37%), Gaps = 71/316 (22%)

Query: 332 NATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFS 391
              FS +F        ++LG+Q H  ++ +       + NCL+ +Y       +A  +F 
Sbjct: 48  TTNFSFVFKECAKQGALELGKQAHAHMIISGFRPTTFVLNCLLQVYTNSRDFVSASMVFD 107

Query: 392 NMVSRDLVSWNSMVMGFS-------------------------------HHGLANETLKV 420
            M  RD+VSWN M+ G+S                                +G + ++++V
Sbjct: 108 KMPLRDVVSWNKMINGYSKSNDMFKANSFFNMMPVRDVVSWNSMLSGYLQNGESLKSIEV 167

Query: 421 FESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYV----SMI 476
           F  M   G   +  TF  IL  CS     S G ++   +     ++ G +  V    +++
Sbjct: 168 FVDMGREGIEFDGRTFAIILKVCSFLEDTSLGMQIHGIV-----VRVGCDTDVVAASALL 222

Query: 477 NLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNA 536
           ++  +  +  E+      +P E +   W A++  C   + N  +   A K   E+  +NA
Sbjct: 223 DMYAKGKRFVESLRVFQGIP-EKNSVSWSAIIAGC--VQNN--LLSLALKFFKEMQKVNA 277

Query: 537 PAHVVLCNIYAAS------------GRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQM 584
               V  +IYA+             G  +  H L+ D    G+         +R   + M
Sbjct: 278 G---VSQSIYASVLRSCAALSELRLGGQLHAHALKSDFAADGI---------VRTATLDM 325

Query: 585 FLSGDKIPAQVAEILL 600
           +   D +  Q A+IL 
Sbjct: 326 YAKCDNM--QDAQILF 339



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 56/251 (22%), Positives = 120/251 (47%), Gaps = 35/251 (13%)

Query: 12  VHLTSSITK-YSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPE 70
           V++ S++   YSK G + +++ +F+   +R+ V++NAM+ G+  +G+  EA +LFE M  
Sbjct: 638 VYICSTLVDMYSKCGDLHDSRLMFEKSLRRDFVTWNAMICGYAHHGKGEEAIQLFERMIL 697

Query: 71  RNV----VSWTAMICGLADAGRVCEARKLFEEMP-----ERNVVSWNSMVVGLIRNGELN 121
            N+    V++ +++   A  G + +  + F  M      +  +  +++MV  L ++G++ 
Sbjct: 698 ENIKPNHVTFISILRACAHMGLIDKGLEYFYMMKRDYGLDPQLPHYSNMVDILGKSGKVK 757

Query: 122 EARKVFNSMPIK-NVISWNAMIA------GYVECCMMGEAIVLFEEMEERNVVTWTSMIS 174
            A ++   MP + + + W  ++         VE  +  EA      ++ ++   +T + +
Sbjct: 758 RALELIREMPFEADDVIWRTLLGVCTIHRNNVE--VAEEATAALLRLDPQDSSAYTLLSN 815

Query: 175 GYCRAGEVEEGYCLFR-----RMPRKNVVSWTA--------MIGGFA---WNGFHKESLL 218
            Y  AG  E+   L R     ++ ++   SW          ++G  A   W   ++E  L
Sbjct: 816 VYADAGMWEKVSDLRRNMRGFKLKKEPGCSWVELKDELHVFLVGDKAHPRWEEIYEELGL 875

Query: 219 LFIEMKGICDN 229
           ++ EMK   D+
Sbjct: 876 IYSEMKPFDDS 886


>gi|307136370|gb|ADN34182.1| pentatricopeptide repeat-containing protein [Cucumis melo subsp.
           melo]
          Length = 1131

 Score =  287 bits (735), Expect = 9e-75,   Method: Compositional matrix adjust.
 Identities = 192/617 (31%), Positives = 310/617 (50%), Gaps = 53/617 (8%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEM----PERNV 73
           +  Y+K   +D AK +F  + +RN+V +NAML GF QNG   E    F  M    P+ + 
Sbjct: 351 VNMYAKCSKMDAAKQVFNSLGERNIVLWNAMLGGFAQNGLAQEVMEFFSYMKRHGPQPDE 410

Query: 74  VSWTAMICGLADAGRVCEARKLFEEMPER----NVVSWNSMVVGLIRNGELNEARKVFNS 129
            ++T++    A    +    +L   M +     N+   N++V    ++G L EARK F  
Sbjct: 411 FTFTSIFSACASLHYLDFGGQLHTVMIKNKFTSNLFVANALVDMYAKSGALKEARKQFEF 470

Query: 130 MPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNV----VTWTSMISGYCRAGEVEEG 185
           M I + +SWNA+I GYV+     EA  +F  M    V    V+  S++S      E ++G
Sbjct: 471 MKIHDNVSWNAIIVGYVQEEYNDEAFFMFRRMVSNGVLPDEVSLASIVSACANVKEFKQG 530

Query: 186 ---YCL--------------------------------FRRMPRKNVVSWTAMIGGFAWN 210
              +CL                                F  MP +NVVS  A+I G+  +
Sbjct: 531 QQCHCLLVKVGLDTSTCAGSSLIDMYVKCGVVLAARDVFYSMPYRNVVSINALIAGYTMS 590

Query: 211 GFHKESLLLFIEMKGICDNGNNCNVQSCNSMING--YIRFGRLEEAQNLFDTVPVRDEIS 268
              +E++ LF E++ +                +G   +  GR    Q +        E+ 
Sbjct: 591 HL-EEAIHLFQEIQMVGLKPTEVTFAGLLDGCDGAFMLNLGRQIHGQVMKWGFLSSSEMV 649

Query: 269 WTSMIDGYLSVGQVSNAYYLFHNMP-DRDAVAWTAMISGLVQNELFVEATYLFMEMRAHG 327
             S++  Y++  + +++  LF  +   +  V WTA+ISG  Q     +A   +  MR+  
Sbjct: 650 CVSLLCMYMNSQRFADSETLFSELQYPKGLVVWTALISGYAQQNHHEKALQFYQHMRSDN 709

Query: 328 VPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAY 387
           + P  ATF+ +  A    +++  G+++H ++  T    D I  + LI MYAKCG +  + 
Sbjct: 710 ILPDQATFASVLRACAGMSSLQTGQEVHSLIFHTGFNMDEITCSSLIDMYAKCGDVKGSL 769

Query: 388 NIFSNMVSRD-LVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHA 446
            +F  M  R+ ++SWNSM++G + +G A E L++F+ M +    P+ VTFLG+LSACSHA
Sbjct: 770 QVFHEMPRRNSVISWNSMIVGLAKNGYAEEALEIFKQMEQQSIIPDEVTFLGVLSACSHA 829

Query: 447 GLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGA 506
           G VS G ++F+ M + YK+QP  +H   M+++LGR G + EAEEF+ +L  + D  +W  
Sbjct: 830 GRVSEGRKVFDLMVNNYKLQPRVDHLGCMVDILGRWGFLNEAEEFINKLGCKADPMLWST 889

Query: 507 LLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKG 566
           LLGAC    G+    + AA +L+EL P ++ ++V+L  +YA S        LR +M LKG
Sbjct: 890 LLGACR-KHGDEVRGKRAANKLMELKPQSSSSYVLLSGLYAESENWSGADSLRREMKLKG 948

Query: 567 VRKVPGCSWLMRNGGIQ 583
           V+K+PG SW+     +Q
Sbjct: 949 VKKLPGYSWIEPGRDVQ 965



 Score =  181 bits (460), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 134/501 (26%), Positives = 238/501 (47%), Gaps = 36/501 (7%)

Query: 21  YSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEM------PERNVV 74
           Y K G +D A+  F  + +++V ++N++LS +L +G  +   + F  M      P     
Sbjct: 86  YVKCGNVDFAQKAFSRLEKKDVFAWNSVLSMYLDHGLFATVVQSFVCMWNHGVRPNEFTF 145

Query: 75  SWTAMIC-GLADA--GRV--CEARKL---FEEMPERNVVSWNSMVVGLIRNGELNEARKV 126
           +     C GL D   G+   C   K+   F    +  ++     +    RN  L +AR V
Sbjct: 146 AMVLSACSGLQDINYGKQVHCGVFKMGFGFRSFCQGGLID----MYAKCRN--LRDARLV 199

Query: 127 FNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEE----RNVVTWTSMISGYCRAGEV 182
           F+     + +SW  +IAGYV      EA+ +F++M+      + +   ++I+ Y   G +
Sbjct: 200 FDGALNLDTVSWTTLIAGYVRDGFPMEAVKVFDKMQRVGHVPDQIALVTVINAYVALGRL 259

Query: 183 EEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMI 242
            +   LF ++P  NVV+W  MI G A  GF +E++  F+E+K         ++ S  S I
Sbjct: 260 ADARKLFTQIPNPNVVAWNVMISGHAKRGFAEEAISFFLELKKTGLKATRSSLGSVLSAI 319

Query: 243 NGY--IRFGRLEEAQ----NLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRD 296
                + +G +  AQ     L D V V      +++++ Y    ++  A  +F+++ +R+
Sbjct: 320 ASLSMLNYGSMVHAQAIKEGLDDNVYVG-----SALVNMYAKCSKMDAAKQVFNSLGERN 374

Query: 297 AVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHC 356
            V W AM+ G  QN L  E    F  M+ HG  P   TF+ +F A  +   +D G Q+H 
Sbjct: 375 IVLWNAMLGGFAQNGLAQEVMEFFSYMKRHGPQPDEFTFTSIFSACASLHYLDFGGQLHT 434

Query: 357 VLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANE 416
           V++K +  S+L + N L+ MYAK G +  A   F  M   D VSWN++++G+      +E
Sbjct: 435 VMIKNKFTSNLFVANALVDMYAKSGALKEARKQFEFMKIHDNVSWNAIIVGYVQEEYNDE 494

Query: 417 TLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMI 476
              +F  M+ +G  P+ V+   I+SAC++     +G +    +  V  +        S+I
Sbjct: 495 AFFMFRRMVSNGVLPDEVSLASIVSACANVKEFKQGQQCHCLLVKV-GLDTSTCAGSSLI 553

Query: 477 NLLGRAGKIKEAEEFVLRLPF 497
           ++  + G +  A +    +P+
Sbjct: 554 DMYVKCGVVLAARDVFYSMPY 574



 Score =  173 bits (438), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 130/530 (24%), Positives = 244/530 (46%), Gaps = 67/530 (12%)

Query: 11  VVHLTSSITKYSKRGFIDEAKALFQLMPQR-----NVVSYNAMLSGFLQNGRLSEARRLF 65
            V  T+ I  Y + GF  EA  +F  M QR     + ++   +++ ++  GRL++AR+LF
Sbjct: 208 TVSWTTLIAGYVRDGFPMEAVKVFDKM-QRVGHVPDQIALVTVINAYVALGRLADARKLF 266

Query: 66  EEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMV---------VGLIR 116
            ++P  NVV+W  MI G A  G   EA   F E+ +  + +  S +         + ++ 
Sbjct: 267 TQIPNPNVVAWNVMISGHAKRGFAEEAISFFLELKKTGLKATRSSLGSVLSAIASLSMLN 326

Query: 117 NGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGY 176
            G +  A+ +   +   NV   +A++  Y +C  M  A  +F  + ERN+V W +M+ G+
Sbjct: 327 YGSMVHAQAIKEGLD-DNVYVGSALVNMYAKCSKMDAAKQVFNSLGERNIVLWNAMLGGF 385

Query: 177 CRAGEVEEGYCLFRRM----PRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKG-----IC 227
            + G  +E    F  M    P+ +  ++T++        F   + L +++  G     + 
Sbjct: 386 AQNGLAQEVMEFFSYMKRHGPQPDEFTFTSI--------FSACASLHYLDFGGQLHTVMI 437

Query: 228 DNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYY 287
            N    N+   N++++ Y + G L+EA+  F+ + + D +SW ++I GY           
Sbjct: 438 KNKFTSNLFVANALVDMYAKSGALKEARKQFEFMKIHDNVSWNAIIVGY----------- 486

Query: 288 LFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATAN 347
                               VQ E   EA ++F  M ++GV P   + + +  A      
Sbjct: 487 --------------------VQEEYNDEAFFMFRRMVSNGVLPDEVSLASIVSACANVKE 526

Query: 348 IDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMG 407
              G+Q HC+L+K   ++     + LI MY KCGV+  A ++F +M  R++VS N+++ G
Sbjct: 527 FKQGQQCHCLLVKVGLDTSTCAGSSLIDMYVKCGVVLAARDVFYSMPYRNVVSINALIAG 586

Query: 408 FSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQP 467
           ++   L  E + +F+ +   G  P  VTF G+L  C  A +++ G ++   +     +  
Sbjct: 587 YTMSHL-EEAIHLFQEIQMVGLKPTEVTFAGLLDGCDGAFMLNLGRQIHGQVMKWGFLSS 645

Query: 468 GPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGN 517
                VS++ +   + +  ++E     L +     +W AL+   G+ + N
Sbjct: 646 SEMVCVSLLCMYMNSQRFADSETLFSELQYPKGLVVWTALIS--GYAQQN 693



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 122/483 (25%), Positives = 235/483 (48%), Gaps = 60/483 (12%)

Query: 53  LQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVV 112
           LQ+ R  +A  LF E P+       A++  L+ A +V  ++ L   +  + ++  N +V 
Sbjct: 34  LQHCRRIQAHNLFNEKPK-------AVLQALSTA-KVIHSKSLKIGVGLKGLLG-NVIVD 84

Query: 113 GLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNV----VT 168
             ++ G ++ A+K F+ +  K+V +WN++++ Y++  +    +  F  M    V     T
Sbjct: 85  LYVKCGNVDFAQKAFSRLEKKDVFAWNSVLSMYLDHGLFATVVQSFVCMWNHGVRPNEFT 144

Query: 169 WTSMISGYCRAGEVEEG---YCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKG 225
           +  ++S      ++  G   +C   +M             GF +  F +  L   I+M  
Sbjct: 145 FAMVLSACSGLQDINYGKQVHCGVFKM-------------GFGFRSFCQGGL---IDMYA 188

Query: 226 IC----------DNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVP----VRDEISWTS 271
            C          D   N +  S  ++I GY+R G   EA  +FD +     V D+I+  +
Sbjct: 189 KCRNLRDARLVFDGALNLDTVSWTTLIAGYVRDGFPMEAVKVFDKMQRVGHVPDQIALVT 248

Query: 272 MIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPL 331
           +I+ Y+++G++++A  LF  +P+ + VAW  MISG  +     EA   F+E++  G+   
Sbjct: 249 VINAYVALGRLADARKLFTQIPNPNVVAWNVMISGHAKRGFAEEAISFFLELKKTGLKAT 308

Query: 332 NATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFS 391
            ++   +  A  + + ++ G  +H   +K   + ++ + + L++MYAKC  +D A  +F+
Sbjct: 309 RSSLGSVLSAIASLSMLNYGSMVHAQAIKEGLDDNVYVGSALVNMYAKCSKMDAAKQVFN 368

Query: 392 NMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSR 451
           ++  R++V WN+M+ GF+ +GLA E ++ F  M   G  P+  TF  I SAC+    +  
Sbjct: 369 SLGERNIVLWNAMLGGFAQNGLAQEVMEFFSYMKRHGPQPDEFTFTSIFSACASLHYLDF 428

Query: 452 GWELFNAMFDVYKIQPGPEHYV--SMINLLGRAGKIKEAEEFVLRLPFE----PDHRIWG 505
           G +L   M    K +     +V  +++++  ++G +KEA     R  FE     D+  W 
Sbjct: 429 GGQLHTVMI---KNKFTSNLFVANALVDMYAKSGALKEA-----RKQFEFMKIHDNVSWN 480

Query: 506 ALL 508
           A++
Sbjct: 481 AII 483



 Score =  145 bits (366), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 131/546 (23%), Positives = 249/546 (45%), Gaps = 44/546 (8%)

Query: 7   PKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQR----------NVVSYNAMLSGFLQNG 56
           P   VV     I+ ++KRGF +EA + F  + +           +V+S  A LS  L  G
Sbjct: 270 PNPNVVAWNVMISGHAKRGFAEEAISFFLELKKTGLKATRSSLGSVLSAIASLS-MLNYG 328

Query: 57  RLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIR 116
            +  A+ + E + + NV   +A++   A   ++  A+++F  + ERN+V WN+M+ G  +
Sbjct: 329 SMVHAQAIKEGLDD-NVYVGSALVNMYAKCSKMDAAKQVFNSLGERNIVLWNAMLGGFAQ 387

Query: 117 NGELNEARKVFNSM----PIKNVISWNAMIAGYVECCMMGEA----IVLFEEMEERNVVT 168
           NG   E  + F+ M    P  +  ++ ++ +       +        V+ +     N+  
Sbjct: 388 NGLAQEVMEFFSYMKRHGPQPDEFTFTSIFSACASLHYLDFGGQLHTVMIKNKFTSNLFV 447

Query: 169 WTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICD 228
             +++  Y ++G ++E    F  M   + VSW A+I G+    ++ E+  +F  M     
Sbjct: 448 ANALVDMYAKSGALKEARKQFEFMKIHDNVSWNAIIVGYVQEEYNDEAFFMFRRM---VS 504

Query: 229 NGNNCNVQSCNSMINGYIRFGRLEEAQN----LFDTVPVRDEISWTSMIDGYLSVGQVSN 284
           NG   +  S  S+++        ++ Q     L          + +S+ID Y+  G V  
Sbjct: 505 NGVLPDEVSLASIVSACANVKEFKQGQQCHCLLVKVGLDTSTCAGSSLIDMYVKCGVVLA 564

Query: 285 AYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGA 344
           A  +F++MP R+ V+  A+I+G   + L  EA +LF E++  G+ P   TF+ L      
Sbjct: 565 ARDVFYSMPYRNVVSINALIAGYTMSHL-EEAIHLFQEIQMVGLKPTEVTFAGLLDGCDG 623

Query: 345 TANIDLGRQIHCVLMK--TESESDLILENCLISMYAKCGVIDNAYNIFSNM-VSRDLVSW 401
              ++LGRQIH  +MK    S S+++  + L+ MY       ++  +FS +   + LV W
Sbjct: 624 AFMLNLGRQIHGQVMKWGFLSSSEMVCVS-LLCMYMNSQRFADSETLFSELQYPKGLVVW 682

Query: 402 NSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWE----LFN 457
            +++ G++      + L+ ++ M      P+  TF  +L AC+    +  G E    +F+
Sbjct: 683 TALISGYAQQNHHEKALQFYQHMRSDNILPDQATFASVLRACAGMSSLQTGQEVHSLIFH 742

Query: 458 AMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGAL---LGACGFC 514
             F++ +I        S+I++  + G +K + +    +P       W ++   L   G+ 
Sbjct: 743 TGFNMDEITCS-----SLIDMYAKCGDVKGSLQVFHEMPRRNSVISWNSMIVGLAKNGYA 797

Query: 515 EGNAEI 520
           E   EI
Sbjct: 798 EEALEI 803


>gi|359478743|ref|XP_002282912.2| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Vitis vinifera]
          Length = 642

 Score =  287 bits (735), Expect = 9e-75,   Method: Compositional matrix adjust.
 Identities = 166/461 (36%), Positives = 247/461 (53%), Gaps = 2/461 (0%)

Query: 139 NAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVV 198
           NA+I   V C  +  A  +F++   R++V+W SMI+GY R G   E    +R M  + + 
Sbjct: 146 NAVIHLLVSCGDLDGARKMFDKSCVRDLVSWNSMINGYVRRGWAYEALNFYREMKVEGIK 205

Query: 199 SWTAMIGGFAWNGFHKESLLLFIEMKG-ICDNGNNCNVQSCNSMINGYIRFGRLEEAQNL 257
                + G   +    E L L  E    I +NG    V   N++++ Y++ G LE A+ L
Sbjct: 206 PDEVTMIGVVSSCAQLEDLDLGRESHCYIEENGLKLTVPLANALMDMYMKCGNLESARKL 265

Query: 258 FDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEAT 317
           FD++  +  +SWT+M+ GY   G +  A+ LF  MPD+D V W AMI G V      EA 
Sbjct: 266 FDSMTNKTMVSWTTMVVGYAQSGLLDMAWKLFDEMPDKDVVPWNAMIGGYVHANRGKEAL 325

Query: 318 YLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMY 377
            LF EM+A  + P   T      A      +D+G  IH  + K E   ++ L   LI MY
Sbjct: 326 ALFNEMQAMNINPDEVTMVSCLSACSQLGALDVGIWIHHYIEKHELSLNVALGTALIDMY 385

Query: 378 AKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFL 437
           AKCG I  A  +F  +  R+ ++W +++ G + HG A+  +  F  M+++   P+ VTFL
Sbjct: 386 AKCGKITKAIQVFQELPGRNSLTWTAIISGLALHGNAHGAIAYFSEMIDNSVMPDEVTFL 445

Query: 438 GILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPF 497
           G+LSAC H GLV  G + F+ M   + + P  +HY  M++LLGRAG ++EAEE +  +P 
Sbjct: 446 GLLSACCHGGLVEEGRKYFSQMSSKFNLSPKLKHYSCMVDLLGRAGLLEEAEELIKSMPI 505

Query: 498 EPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHK 557
           E D  +WGAL  AC    GN  + E AA +LL++DP ++  +V+L N+Y  +    E  K
Sbjct: 506 EADAVVWGALFFACRI-HGNVLMGERAASKLLQMDPHDSGIYVLLANMYGEAEMWKEAGK 564

Query: 558 LRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
            R  M  +GV K PGCS +  NG +  F+  DK   Q  +I
Sbjct: 565 ARKLMRQRGVEKTPGCSSIEVNGIVYEFIVRDKSHPQSEQI 605



 Score =  145 bits (365), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 108/413 (26%), Positives = 199/413 (48%), Gaps = 21/413 (5%)

Query: 41  NVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMP 100
           ++   NA++   +  G L  AR++F++   R++VSW +MI G    G   EA   + EM 
Sbjct: 141 DIFVSNAVIHLLVSCGDLDGARKMFDKSCVRDLVSWNSMINGYVRRGWAYEALNFYREMK 200

Query: 101 ERNVVSWNSMVVGLIRN----GELNEARKVF-----NSMPIKNVISWNAMIAGYVECCMM 151
              +      ++G++ +     +L+  R+       N + +   ++ NA++  Y++C  +
Sbjct: 201 VEGIKPDEVTMIGVVSSCAQLEDLDLGRESHCYIEENGLKLTVPLA-NALMDMYMKCGNL 259

Query: 152 GEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNG 211
             A  LF+ M  + +V+WT+M+ GY ++G ++  + LF  MP K+VV W AMIGG+    
Sbjct: 260 ESARKLFDSMTNKTMVSWTTMVVGYAQSGLLDMAWKLFDEMPDKDVVPWNAMIGGYVHAN 319

Query: 212 FHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISW-- 269
             KE+L LF EM+ +  N +   + SC S  +   + G L+    +   +  + E+S   
Sbjct: 320 RGKEALALFNEMQAMNINPDEVTMVSCLSACS---QLGALDVGIWIHHYIE-KHELSLNV 375

Query: 270 ---TSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAH 326
              T++ID Y   G+++ A  +F  +P R+++ WTA+ISGL  +     A   F EM  +
Sbjct: 376 ALGTALIDMYAKCGKITKAIQVFQELPGRNSLTWTAIISGLALHGNAHGAIAYFSEMIDN 435

Query: 327 GVPPLNATFSVLFGAAGATANIDLGRQIHCVL-MKTESESDLILENCLISMYAKCGVIDN 385
            V P   TF  L  A      ++ GR+    +  K      L   +C++ +  + G+++ 
Sbjct: 436 SVMPDEVTFLGLLSACCHGGLVEEGRKYFSQMSSKFNLSPKLKHYSCMVDLLGRAGLLEE 495

Query: 386 AYNIFSNM-VSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFL 437
           A  +  +M +  D V W ++      HG      +    +L+   H + +  L
Sbjct: 496 AEELIKSMPIEADAVVWGALFFACRIHGNVLMGERAASKLLQMDPHDSGIYVL 548



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 97/344 (28%), Positives = 160/344 (46%), Gaps = 22/344 (6%)

Query: 3   ERNHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEAR 62
           E N  K  V    + +  Y K G ++ A+ LF  M  + +VS+  M+ G+ Q+G L  A 
Sbjct: 235 EENGLKLTVPLANALMDMYMKCGNLESARKLFDSMTNKTMVSWTTMVVGYAQSGLLDMAW 294

Query: 63  RLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNV----VSWNSMVVGLIRNG 118
           +LF+EMP+++VV W AMI G   A R  EA  LF EM   N+    V+  S +    + G
Sbjct: 295 KLFDEMPDKDVVPWNAMIGGYVHANRGKEALALFNEMQAMNINPDEVTMVSCLSACSQLG 354

Query: 119 ELNEARKVFNSMPIK----NVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMIS 174
            L+    + + +       NV    A+I  Y +C  + +AI +F+E+  RN +TWT++IS
Sbjct: 355 ALDVGIWIHHYIEKHELSLNVALGTALIDMYAKCGKITKAIQVFQELPGRNSLTWTAIIS 414

Query: 175 GYCRAGEVEEGYCLFRRMPRKNV----VSWTAMIGGFAWNGFHKESLLLFIEMKGICDNG 230
           G    G        F  M   +V    V++  ++      G  +E    F +M    +  
Sbjct: 415 GLALHGNAHGAIAYFSEMIDNSVMPDEVTFLGLLSACCHGGLVEEGRKYFSQMSSKFNLS 474

Query: 231 NNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVR-DEISWTSM-----IDGYLSVGQVSN 284
                 SC  M++   R G LEEA+ L  ++P+  D + W ++     I G + +G+ + 
Sbjct: 475 PKLKHYSC--MVDLLGRAGLLEEAEELIKSMPIEADAVVWGALFFACRIHGNVLMGERAA 532

Query: 285 AYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGV 328
           +  L   M   D+  +  + +   + E++ EA      MR  GV
Sbjct: 533 SKLL--QMDPHDSGIYVLLANMYGEAEMWKEAGKARKLMRQRGV 574



 Score =  108 bits (270), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 90/388 (23%), Positives = 163/388 (42%), Gaps = 69/388 (17%)

Query: 165 NVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLL-LFIEM 223
           N  +W   I G+  +    E   L++R+ + +            +    + SL+ +  E+
Sbjct: 70  NTFSWNVAIRGFLDSENPREAVVLYKRVLQCDGTKPDNYTYPLLFKACARLSLIRMGSEI 129

Query: 224 KG-ICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQV 282
            G +   G + ++   N++I+  +  G L+ A+ +FD   VRD +SW SMI+GY+  G  
Sbjct: 130 LGHVLHLGFDSDIFVSNAVIHLLVSCGDLDGARKMFDKSCVRDLVSWNSMINGYVRRG-- 187

Query: 283 SNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAA 342
                            W              EA   + EM+  G+ P   T   +  + 
Sbjct: 188 -----------------WA------------YEALNFYREMKVEGIKPDEVTMIGVVSSC 218

Query: 343 GATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWN 402
               ++DLGR+ HC + +   +  + L N L+ MY KCG +++A  +F +M ++ +VSW 
Sbjct: 219 AQLEDLDLGRESHCYIEENGLKLTVPLANALMDMYMKCGNLESARKLFDSMTNKTMVSWT 278

Query: 403 SMVMGFSHHGLAN-------------------------------ETLKVFESMLESGTHP 431
           +MV+G++  GL +                               E L +F  M     +P
Sbjct: 279 TMVVGYAQSGLLDMAWKLFDEMPDKDVVPWNAMIGGYVHANRGKEALALFNEMQAMNINP 338

Query: 432 NSVTFLGILSACSHAGLVSRG-WELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEE 490
           + VT +  LSACS  G +  G W   +   + +++        ++I++  + GKI +A +
Sbjct: 339 DEVTMVSCLSACSQLGALDVGIW--IHHYIEKHELSLNVALGTALIDMYAKCGKITKAIQ 396

Query: 491 FVLRLPFEPDHRIWGALLGACGFCEGNA 518
               LP   +   W A++       GNA
Sbjct: 397 VFQELPGR-NSLTWTAIISGLAL-HGNA 422



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 88/381 (23%), Positives = 166/381 (43%), Gaps = 63/381 (16%)

Query: 240 SMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMI-DGYLS--------VGQVSNAYY--- 287
            +IN ++    LE+ +++     ++ ++  T +I DG+ S        + +  +  Y   
Sbjct: 4   QLINPFLSL--LEKCKSISQLKQIQSQMVLTGLIEDGFASSRLIAFCAISEWRDLDYCTN 61

Query: 288 LFHNMPDRDAVAWTAMISGLVQNELFVEATYLFME-MRAHGVPPLNATFSVLFGAAGATA 346
           +  N  + +  +W   I G + +E   EA  L+   ++  G  P N T+ +LF A    +
Sbjct: 62  ILFNTRNPNTFSWNVAIRGFLDSENPREAVVLYKRVLQCDGTKPDNYTYPLLFKACARLS 121

Query: 347 NIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVM 406
            I +G +I   ++    +SD+ + N +I +   CG +D A  +F     RDLVSWNSM+ 
Sbjct: 122 LIRMGSEILGHVLHLGFDSDIFVSNAVIHLLVSCGDLDGARKMFDKSCVRDLVSWNSMIN 181

Query: 407 GFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWE------------ 454
           G+   G A E L  +  M   G  P+ VT +G++S+C+    +  G E            
Sbjct: 182 GYVRRGWAYEALNFYREMKVEGIKPDEVTMIGVVSSCAQLEDLDLGRESHCYIEENGLKL 241

Query: 455 ---LFNAMFDVY----KIQPGPEHYVSMINL-----------LGRAGKIKEAEEFVLRLP 496
              L NA+ D+Y     ++   + + SM N              ++G +  A +    +P
Sbjct: 242 TVPLANALMDMYMKCGNLESARKLFDSMTNKTMVSWTTMVVGYAQSGLLDMAWKLFDEMP 301

Query: 497 FEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNA-PAHVVLCNIYAASGR---- 551
            + D   W A++G  G+   N    + A     E+  +N  P  V + +  +A  +    
Sbjct: 302 -DKDVVPWNAMIG--GYVHANR--GKEALALFNEMQAMNINPDEVTMVSCLSACSQLGAL 356

Query: 552 --------HVEEHKLRMDMGL 564
                   ++E+H+L +++ L
Sbjct: 357 DVGIWIHHYIEKHELSLNVAL 377


>gi|359478499|ref|XP_003632122.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 577

 Score =  287 bits (735), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 156/437 (35%), Positives = 242/437 (55%), Gaps = 9/437 (2%)

Query: 163 ERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIE 222
           E +++  T ++  Y + G+++    +F  MPR++VV+  AMI   + +G+ +E+  LF  
Sbjct: 42  EYDMILQTGLLDFYAKVGDLKCAKRVFMGMPRRDVVANNAMISALSKHGYVEEARNLF-- 99

Query: 223 MKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQV 282
                DN    N  S NSMI  Y + G +  A+ +FD  PV+D +SW ++IDGY    Q+
Sbjct: 100 -----DNMTERNSCSWNSMITCYCKLGDINSARLMFDCNPVKDVVSWNAIIDGYCKSKQL 154

Query: 283 SNAYYLFHNMPD-RDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGA 341
             A  LF  M   R++V W  MIS  VQ   F  A  +F +M++  V P   T   L  A
Sbjct: 155 VAAQELFLLMGSARNSVTWNTMISAYVQCGEFGTAISMFQQMQSENVKPTEVTMVSLLSA 214

Query: 342 AGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSW 401
                 +D+G  IH  +     + D++L N LI MY KCG ++ A ++F  +  +++  W
Sbjct: 215 CAHLGALDMGEWIHGYIRTKRLKIDVVLGNALIDMYCKCGALEAAIDVFHGLSRKNIFCW 274

Query: 402 NSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFD 461
           NS+++G   +G   E +  F  M + G  P+ VTF+GILS CSH+GL+S G   F+ M  
Sbjct: 275 NSIIVGLGMNGRGEEAIAAFIVMEKEGIKPDGVTFVGILSGCSHSGLLSAGQRYFSEMLG 334

Query: 462 VYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIA 521
           VY ++PG EHY  M++LLGRAG +KEA E +  +P +P+  + G+LL AC     + ++ 
Sbjct: 335 VYGLEPGVEHYGCMVDLLGRAGYLKEALELIRAMPMKPNSMVLGSLLRACQI-HKDTKLG 393

Query: 522 EHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGG 581
           E   ++LLELDP +   +V L N+YA+  R  + +  R  M  +GV K PGCS +  N  
Sbjct: 394 EQVTQQLLELDPCDGGNYVFLSNLYASLSRWDDVNTCRKLMIKRGVHKTPGCSSIEVNNI 453

Query: 582 IQMFLSGDKIPAQVAEI 598
           +  F++GD    Q  +I
Sbjct: 454 VHEFVAGDTSHPQFTQI 470



 Score =  152 bits (384), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 111/372 (29%), Positives = 174/372 (46%), Gaps = 38/372 (10%)

Query: 39  QRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEE 98
           + +++    +L  + + G L  A+R+F  MP R+VV+  AMI  L+  G V EAR LF+ 
Sbjct: 42  EYDMILQTGLLDFYAKVGDLKCAKRVFMGMPRRDVVANNAMISALSKHGYVEEARNLFDN 101

Query: 99  MPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLF 158
           M ERN  SWNSM+    + G++N AR +F+  P+K+V+SWNA+I GY +   +  A  LF
Sbjct: 102 MTERNSCSWNSMITCYCKLGDINSARLMFDCNPVKDVVSWNAIIDGYCKSKQLVAAQELF 161

Query: 159 EEM-EERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVV-SWTAMIGGFAWNGFHKES 216
             M   RN VTW +MIS Y + GE      +F++M  +NV  +   M+           S
Sbjct: 162 LLMGSARNSVTWNTMISAYVQCGEFGTAISMFQQMQSENVKPTEVTMV-----------S 210

Query: 217 LLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGY 276
           LL      G  D G           I+GYIR  RL+            D +   ++ID Y
Sbjct: 211 LLSACAHLGALDMG---------EWIHGYIRTKRLK-----------IDVVLGNALIDMY 250

Query: 277 LSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFS 336
              G +  A  +FH +  ++   W ++I GL  N    EA   F+ M   G+ P   TF 
Sbjct: 251 CKCGALEAAIDVFHGLSRKNIFCWNSIIVGLGMNGRGEEAIAAFIVMEKEGIKPDGVTFV 310

Query: 337 VLFGAAGATANIDLGRQIHCVLMKTES-ESDLILENCLISMYAKCGVIDNAYNIFSNMVS 395
            +      +  +  G++    ++     E  +    C++ +  + G +  A  +   M  
Sbjct: 311 GILSGCSHSGLLSAGQRYFSEMLGVYGLEPGVEHYGCMVDLLGRAGYLKEALELIRAMPM 370

Query: 396 RDLVSWNSMVMG 407
           +     NSMV+G
Sbjct: 371 KP----NSMVLG 378



 Score =  139 bits (349), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 83/252 (32%), Positives = 132/252 (52%), Gaps = 42/252 (16%)

Query: 21  YSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMI 80
           Y+K G +  AK +F  MP+R+VV+ NAM+S   ++G + EAR LF+ M ERN  SW +MI
Sbjct: 55  YAKVGDLKCAKRVFMGMPRRDVVANNAMISALSKHGYVEEARNLFDNMTERNSCSWNSMI 114

Query: 81  CGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSM-PIKNVISWN 139
                 G +  AR +F+  P ++VVSWN+++ G  ++ +L  A+++F  M   +N ++WN
Sbjct: 115 TCYCKLGDINSARLMFDCNPVKDVVSWNAIIDGYCKSKQLVAAQELFLLMGSARNSVTWN 174

Query: 140 AMIAGYVECCMMGEAIVLFEEMEERNV----VTWTSMISG-------------------- 175
            MI+ YV+C   G AI +F++M+  NV    VT  S++S                     
Sbjct: 175 TMISAYVQCGEFGTAISMFQQMQSENVKPTEVTMVSLLSACAHLGALDMGEWIHGYIRTK 234

Query: 176 ---------------YCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLF 220
                          YC+ G +E    +F  + RKN+  W ++I G   NG  +E++  F
Sbjct: 235 RLKIDVVLGNALIDMYCKCGALEAAIDVFHGLSRKNIFCWNSIIVGLGMNGRGEEAIAAF 294

Query: 221 I--EMKGICDNG 230
           I  E +GI  +G
Sbjct: 295 IVMEKEGIKPDG 306



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 50/195 (25%), Positives = 91/195 (46%), Gaps = 16/195 (8%)

Query: 323 MRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGV 382
           M  + V P   +FS++  +   +    LG   HC +MK   E D+IL+  L+  YAK G 
Sbjct: 1   MLRNDVLPSKTSFSLILRSCAISGEAQLGEAFHCQIMKMGFEYDMILQTGLLDFYAKVGD 60

Query: 383 IDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSA 442
           +  A  +F  M  RD+V+ N+M+   S HG   E   +F++M    T  NS ++  +++ 
Sbjct: 61  LKCAKRVFMGMPRRDVVANNAMISALSKHGYVEEARNLFDNM----TERNSCSWNSMITC 116

Query: 443 CSHAGLVSRGWELF--NAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPD 500
               G ++    +F  N + DV         + ++I+   ++ ++  A+E  L +    +
Sbjct: 117 YCKLGDINSARLMFDCNPVKDVVS-------WNAIIDGYCKSKQLVAAQELFLLMGSARN 169

Query: 501 HRIWGALLGA---CG 512
              W  ++ A   CG
Sbjct: 170 SVTWNTMISAYVQCG 184


>gi|296085026|emb|CBI28441.3| unnamed protein product [Vitis vinifera]
          Length = 913

 Score =  287 bits (735), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 197/668 (29%), Positives = 320/668 (47%), Gaps = 102/668 (15%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEM------PER 71
           I  Y + G +  A+ LF  M  RN+V++  ++SG+ QNG+  EA   F +M      P  
Sbjct: 141 INIYVRIGDLGSAQKLFDEMSNRNLVTWACLISGYTQNGKPDEACARFRDMVRAGFIPNH 200

Query: 72  NVVSWTAMIC---------------GLADAGR------VC---------------EARKL 95
                    C               GL    R      VC               +AR +
Sbjct: 201 YAFGSALRACQESGPSGCKLGVQIHGLISKTRYGSDVVVCNVLISMYGSCLDSANDARSV 260

Query: 96  FEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIK---------------------- 133
           F+ +  RN +SWNS++    R G+   A  +F+SM  +                      
Sbjct: 261 FDGIGIRNSISWNSIISVYSRRGDAVSAYDLFSSMQKEGLGFSFKPNDAFSEFSVLEEGR 320

Query: 134 ------------------NVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISG 175
                              V   N ++  Y +   + +A  +FE M E++ V+W S+ISG
Sbjct: 321 RKGREVHAHVIRTGLNDNKVAIGNGLVNMYAKSGAIADACSVFELMVEKDSVSWNSLISG 380

Query: 176 YCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFH-KESLLLFIEMK----GICDNG 230
             +    E+   +F  MP  + VSW ++IG  + +     +++  F++M     G+    
Sbjct: 381 LDQNECSEDAAEMFSLMPEYDQVSWNSVIGALSDSEASVSQAVKYFLQMMRGGWGL-SRV 439

Query: 231 NNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVR-----DEISWTSMIDGYLSVGQVSNA 285
              N+ S  S ++       L E  +    + ++     D     +++  Y   G+++  
Sbjct: 440 TFINILSAVSSLS-------LHEVSHQIHALVLKYCLSDDTAIGNALLSCYGKCGEMNEC 492

Query: 286 YYLFHNMPD-RDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGA 344
             +F  M + RD V+W +MISG + NEL  +A  L   M   G    + TF+ +  A  +
Sbjct: 493 EKIFARMSETRDEVSWNSMISGYIHNELLHKAMDLVWFMMQKGQRLDSFTFATILSACAS 552

Query: 345 TANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSM 404
            A ++ G ++H   ++   ESD+++ + L+ MY+KCG ID A   F  M  R++ SWNSM
Sbjct: 553 VATLERGMEVHACGIRACLESDVVVGSALVDMYSKCGRIDYASRFFELMPLRNVYSWNSM 612

Query: 405 VMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYK 464
           + G++ HG   + LK+F  M+  G  P+ VTF+G+LSACSH G V  G+E F +M +VY+
Sbjct: 613 ISGYARHGHGEKALKLFTRMMLDGQPPDHVTFVGVLSACSHVGFVEEGFEHFKSMSEVYR 672

Query: 465 IQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEG-NAEIAEH 523
           + P  EH+  M++LLGRAGK+ E  +F+  +P +P+  IW  +LGAC    G N E+   
Sbjct: 673 LSPRVEHFSCMVDLLGRAGKLDEVGDFINSMPMKPNVLIWRTVLGACCRANGRNTELGRR 732

Query: 524 AAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQ 583
           AA+ LLEL+P NA  +V+L N+YA+  +  +  K R  M    V+K  GCSW+    G+ 
Sbjct: 733 AAEMLLELEPQNAVNYVLLANMYASGEKWEDVAKARTAMKEAAVKKEAGCSWVTMKDGVH 792

Query: 584 MFLSGDKI 591
           +F++GDK+
Sbjct: 793 VFVAGDKL 800



 Score =  169 bits (429), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 142/536 (26%), Positives = 251/536 (46%), Gaps = 46/536 (8%)

Query: 41  NVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMP 100
           N+   N +++ +++ G L  A++LF+EM  RN+V+W  +I G    G+  EA   F +M 
Sbjct: 133 NLFLSNTLINIYVRIGDLGSAQKLFDEMSNRNLVTWACLISGYTQNGKPDEACARFRDMV 192

Query: 101 ERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVIS----------WNAMIAGYVECC- 149
               +  +      +R  + +        + I  +IS           N +I+ Y  C  
Sbjct: 193 RAGFIPNHYAFGSALRACQESGPSGCKLGVQIHGLISKTRYGSDVVVCNVLISMYGSCLD 252

Query: 150 MMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAW 209
              +A  +F+ +  RN ++W S+IS Y R G+    Y LF  M ++ +        GF++
Sbjct: 253 SANDARSVFDGIGIRNSISWNSIISVYSRRGDAVSAYDLFSSMQKEGL--------GFSF 304

Query: 210 ---NGFHKESLLLFIEMKG-------ICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFD 259
              + F + S+L     KG       I    N+  V   N ++N Y + G + +A ++F+
Sbjct: 305 KPNDAFSEFSVLEEGRRKGREVHAHVIRTGLNDNKVAIGNGLVNMYAKSGAIADACSVFE 364

Query: 260 TVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFV-EATY 318
            +  +D +SW S+I G        +A  +F  MP+ D V+W ++I  L  +E  V +A  
Sbjct: 365 LMVEKDSVSWNSLISGLDQNECSEDAAEMFSLMPEYDQVSWNSVIGALSDSEASVSQAVK 424

Query: 319 LFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYA 378
            F++M   G      TF  +  A  + +  ++  QIH +++K     D  + N L+S Y 
Sbjct: 425 YFLQMMRGGWGLSRVTFINILSAVSSLSLHEVSHQIHALVLKYCLSDDTAIGNALLSCYG 484

Query: 379 KCGVIDNAYNIFSNMV-SRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFL 437
           KCG ++    IF+ M  +RD VSWNSM+ G+ H+ L ++ + +   M++ G   +S TF 
Sbjct: 485 KCGEMNECEKIFARMSETRDEVSWNSMISGYIHNELLHKAMDLVWFMMQKGQRLDSFTFA 544

Query: 438 GILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYV----SMINLLGRAGKIKEAEEFVL 493
            ILSAC+    + RG E+         I+   E  V    +++++  + G+I  A  F  
Sbjct: 545 TILSACASVATLERGMEVHAC-----GIRACLESDVVVGSALVDMYSKCGRIDYASRFFE 599

Query: 494 RLPFEPDHRIWGALLGACGFCE-GNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAA 548
            +P    +  W +++   G+   G+ E A     R++ LD    P HV    + +A
Sbjct: 600 LMPLRNVYS-WNSMIS--GYARHGHGEKALKLFTRMM-LDG-QPPDHVTFVGVLSA 650



 Score =  112 bits (279), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 104/414 (25%), Positives = 180/414 (43%), Gaps = 69/414 (16%)

Query: 132 IKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRR 191
           + N+   N +I  YV    +G A  LF+EM  RN+VTW  +ISGY + G+ +E    FR 
Sbjct: 131 VGNLFLSNTLINIYVRIGDLGSAQKLFDEMSNRNLVTWACLISGYTQNGKPDEACARFRD 190

Query: 192 MPRKNVVSWTAMIGGF--AWNGFHKESLLLFIEMKG-ICDNGNNCNVQSCNSMINGYIR- 247
           M R   +      G    A          L +++ G I       +V  CN +I+ Y   
Sbjct: 191 MVRAGFIPNHYAFGSALRACQESGPSGCKLGVQIHGLISKTRYGSDVVVCNVLISMYGSC 250

Query: 248 FGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGL 307
                +A+++FD + +R+ ISW S+I  Y   G   +AY LF +M  ++ + ++      
Sbjct: 251 LDSANDARSVFDGIGIRNSISWNSIISVYSRRGDAVSAYDLFSSM-QKEGLGFS-----F 304

Query: 308 VQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTE-SESD 366
             N+ F E                   FSVL            GR++H  +++T  +++ 
Sbjct: 305 KPNDAFSE-------------------FSVL------EEGRRKGREVHAHVIRTGLNDNK 339

Query: 367 LILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLA------------ 414
           + + N L++MYAK G I +A ++F  MV +D VSWNS++ G   +  +            
Sbjct: 340 VAIGNGLVNMYAKSGAIADACSVFELMVEKDSVSWNSLISGLDQNECSEDAAEMFSLMPE 399

Query: 415 --------------------NETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWE 454
                               ++ +K F  M+  G   + VTF+ ILSA S   L     +
Sbjct: 400 YDQVSWNSVIGALSDSEASVSQAVKYFLQMMRGGWGLSRVTFINILSAVSSLSLHEVSHQ 459

Query: 455 LFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALL 508
           + +A+   Y +        ++++  G+ G++ E E+   R+    D   W +++
Sbjct: 460 I-HALVLKYCLSDDTAIGNALLSCYGKCGEMNECEKIFARMSETRDEVSWNSMI 512



 Score = 88.6 bits (218), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 103/433 (23%), Positives = 175/433 (40%), Gaps = 88/433 (20%)

Query: 16  SSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEE-------- 67
           S I+ YS+RG    A  LF  M +  +         F +   L E RR   E        
Sbjct: 274 SIISVYSRRGDAVSAYDLFSSMQKEGLGFSFKPNDAFSEFSVLEEGRRKGREVHAHVIRT 333

Query: 68  -MPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKV 126
            + +  V     ++   A +G + +A  +FE M E++ VSWNS++ GL +N    +A ++
Sbjct: 334 GLNDNKVAIGNGLVNMYAKSGAIADACSVFELMVEKDSVSWNSLISGLDQNECSEDAAEM 393

Query: 127 FNSMPIKNVISWNAMIAGYVEC-CMMGEAIVLFEEMEER----------NVVTWTS---- 171
           F+ MP  + +SWN++I    +    + +A+  F +M             N+++  S    
Sbjct: 394 FSLMPEYDQVSWNSVIGALSDSEASVSQAVKYFLQMMRGGWGLSRVTFINILSAVSSLSL 453

Query: 172 -------------------------MISGYCRAGEVEEGYCLFRRMPR-KNVVSWTAMIG 205
                                    ++S Y + GE+ E   +F RM   ++ VSW +MI 
Sbjct: 454 HEVSHQIHALVLKYCLSDDTAIGNALLSCYGKCGEMNECEKIFARMSETRDEVSWNSMIS 513

Query: 206 GFAWNG-FHKE-SLLLFIEMKG-------------------ICDNG---NNCNVQSC--- 238
           G+  N   HK   L+ F+  KG                     + G   + C +++C   
Sbjct: 514 GYIHNELLHKAMDLVWFMMQKGQRLDSFTFATILSACASVATLERGMEVHACGIRACLES 573

Query: 239 -----NSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNM- 292
                +++++ Y + GR++ A   F+ +P+R+  SW SMI GY   G    A  LF  M 
Sbjct: 574 DVVVGSALVDMYSKCGRIDYASRFFELMPLRNVYSWNSMISGYARHGHGEKALKLFTRMM 633

Query: 293 ---PDRDAVAWTAMISGLVQNELFVEATYLFMEM-RAHGVPPLNATFSVLFGAAGATANI 348
                 D V +  ++S         E    F  M   + + P    FS +    G    +
Sbjct: 634 LDGQPPDHVTFVGVLSACSHVGFVEEGFEHFKSMSEVYRLSPRVEHFSCMVDLLGRAGKL 693

Query: 349 D-LGRQIHCVLMK 360
           D +G  I+ + MK
Sbjct: 694 DEVGDFINSMPMK 706



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 72/247 (29%), Positives = 116/247 (46%), Gaps = 36/247 (14%)

Query: 8   KSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEE 67
           +S VV  ++ +  YSK G ID A   F+LMP RNV S+N+M+SG+ ++G   +A +LF  
Sbjct: 572 ESDVVVGSALVDMYSKCGRIDYASRFFELMPLRNVYSWNSMISGYARHGHGEKALKLFTR 631

Query: 68  M------PERNVVSWTAMICGLADAGRVCEARKLFEEMPE-----RNVVSWNSMVVGLIR 116
           M      P+   V++  ++   +  G V E  + F+ M E       V  ++ MV  L R
Sbjct: 632 MMLDGQPPDH--VTFVGVLSACSHVGFVEEGFEHFKSMSEVYRLSPRVEHFSCMVDLLGR 689

Query: 117 NGELNEARKVFNSMPIK-NVISWNAMIAGYVECCMMG--------EAIVLFEEMEERNVV 167
            G+L+E     NSMP+K NV+ W  ++     CC            A  +  E+E +N V
Sbjct: 690 AGKLDEVGDFINSMPMKPNVLIWRTVLGA---CCRANGRNTELGRRAAEMLLELEPQNAV 746

Query: 168 TWTSMISGYCRAGEVEEGYCLFRRMPRKNVV------SWTAMIGG----FAWNGFHKESL 217
            +  + + Y  +GE  E     R   ++  V      SW  M  G     A +  H E  
Sbjct: 747 NYVLLANMYA-SGEKWEDVAKARTAMKEAAVKKEAGCSWVTMKDGVHVFVAGDKLHPEKD 805

Query: 218 LLFIEMK 224
           L++ +++
Sbjct: 806 LIYDKLR 812



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 33/114 (28%), Positives = 57/114 (50%)

Query: 334 TFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNM 393
           TF  L      +   +  R++H   +K     +L L N LI++Y + G + +A  +F  M
Sbjct: 101 TFESLINRYQGSCCSEEARELHLQSIKYGFVGNLFLSNTLINIYVRIGDLGSAQKLFDEM 160

Query: 394 VSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAG 447
            +R+LV+W  ++ G++ +G  +E    F  M+ +G  PN   F   L AC  +G
Sbjct: 161 SNRNLVTWACLISGYTQNGKPDEACARFRDMVRAGFIPNHYAFGSALRACQESG 214


>gi|147819295|emb|CAN68962.1| hypothetical protein VITISV_019277 [Vitis vinifera]
          Length = 676

 Score =  287 bits (735), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 188/618 (30%), Positives = 311/618 (50%), Gaps = 61/618 (9%)

Query: 13  HLTSSITK-YSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEM--- 68
           HL SS+   Y+  G    A+ LF  +   ++ S+NAM+  +  +G   +A  LF +M   
Sbjct: 57  HLLSSLAAAYAMCGCAPHARKLFDELRNPSLFSWNAMIRMYTNSGLSYDALGLFVQMLAS 116

Query: 69  ----PERNVVSWTAMICG---LADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELN 121
               P+     +    CG   L + G +  AR +         V  NS++   +  GE+ 
Sbjct: 117 GRRWPDNYTYPFVIKACGDYLLPEMGALIHARTVMSGFDSDAFVQ-NSLMAMYMNCGEME 175

Query: 122 EARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEM-------------------- 161
            AR+VF+ M  + ++SWN MI GY +   + EA+++F+ M                    
Sbjct: 176 VARRVFDLMRERTLVSWNTMINGYFKNGCVKEALMVFDWMIGKGIEPDCATVVSVLPVCS 235

Query: 162 ---------------EERN----VVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTA 202
                          E +N    +  W S++  Y + G ++E   +F  M +++VVSWT 
Sbjct: 236 YLKELEVGRRVHALVEVKNLGEDISVWNSLLDMYAKCGNMDEAQMIFYEMDKRDVVSWTT 295

Query: 203 MIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQS----CNSMINGYIRFGRLEEAQNLF 258
           M+ G+  NG  + +LLL   M+      N   + S    C S+ +  ++ GR      + 
Sbjct: 296 MMNGYILNGDARSALLLCQMMQFESVKPNFVTLASVLSACASLYS--LKHGRCLHGWAIR 353

Query: 259 DTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATY 318
             +   + I  T++ID Y     V+ ++ +F     +    W A+ISG + N L  +A  
Sbjct: 354 QKLE-SEVIVETALIDMYAKCNNVNLSFRVFSKXSKQRTAPWNAIISGCIHNGLSRKAIE 412

Query: 319 LFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYA 378
           LF +M    V P +AT + L  A     ++   R +H  L+++   S + +   LI +Y+
Sbjct: 413 LFKQMLMEAVDPNDATLNSLLPAYAFLTDLQQARNMHGYLIRSGFLSRIEVATILIDIYS 472

Query: 379 KCGVIDNAYNIFSNM--VSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTF 436
           KCG +++A+NIF+ +    +D+++W++++ G+  HG     + +F+ M++SG  PN +TF
Sbjct: 473 KCGSLESAHNIFNGIPKKDKDIITWSAIIAGYGMHGHGETAISLFDQMVQSGVKPNEITF 532

Query: 437 LGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLP 496
             IL ACSHAGLV  G  LF  M +  ++    +HY  +I+LLGRAG+++EA E +  + 
Sbjct: 533 TSILHACSHAGLVDEGLGLFKFMLEDNQMSLRTDHYTCVIDLLGRAGRLEEAYELIRTMA 592

Query: 497 FEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEH 556
           F P+H +WGALLG+C   E N E+ E AAK L EL+P N   +V+L NIY+A GR  +  
Sbjct: 593 FRPNHAVWGALLGSCVIHE-NVELGEVAAKWLFELEPGNTGNYVLLANIYSAVGRWRDAE 651

Query: 557 KLRMDMGLKGVRKVPGCS 574
            +R+ M   G+RK P  S
Sbjct: 652 HVRLMMNNIGLRKTPAHS 669



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 58/210 (27%), Positives = 104/210 (49%), Gaps = 14/210 (6%)

Query: 4   RNHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARR 63
           R   +S V+  T+ I  Y+K   ++ +  +F    ++    +NA++SG + NG   +A  
Sbjct: 353 RQKLESEVIVETALIDMYAKCNNVNLSFRVFSKXSKQRTAPWNAIISGCIHNGLSRKAIE 412

Query: 64  LFEEM----PERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLI---- 115
           LF++M     + N  +  +++   A    + +AR +   +     +S   +   LI    
Sbjct: 413 LFKQMLMEAVDPNDATLNSLLPAYAFLTDLQQARNMHGYLIRSGFLSRIEVATILIDIYS 472

Query: 116 RNGELNEARKVFNSMPI--KNVISWNAMIAGYVECCMMGEAIVLFEEMEERNV----VTW 169
           + G L  A  +FN +P   K++I+W+A+IAGY        AI LF++M +  V    +T+
Sbjct: 473 KCGSLESAHNIFNGIPKKDKDIITWSAIIAGYGMHGHGETAISLFDQMVQSGVKPNEITF 532

Query: 170 TSMISGYCRAGEVEEGYCLFRRMPRKNVVS 199
           TS++     AG V+EG  LF+ M   N +S
Sbjct: 533 TSILHACSHAGLVDEGLGLFKFMLEDNQMS 562



 Score = 49.7 bits (117), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 33/116 (28%), Positives = 56/116 (48%), Gaps = 4/116 (3%)

Query: 332 NATFSVLFGAAGATANIDLGRQIHC---VLMKTESESDLILENCLISMYAKCGVIDNAYN 388
            A +  L     +  +I   +QIH     L    S     L + L + YA CG   +A  
Sbjct: 18  TARYQSLLQRCTSRKSIPNTKQIHAHTITLGLLSSPYSHHLLSSLAAAYAMCGCAPHARK 77

Query: 389 IFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTH-PNSVTFLGILSAC 443
           +F  + +  L SWN+M+  +++ GL+ + L +F  ML SG   P++ T+  ++ AC
Sbjct: 78  LFDELRNPSLFSWNAMIRMYTNSGLSYDALGLFVQMLASGRRWPDNYTYPFVIKAC 133


>gi|356540339|ref|XP_003538647.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g22690-like [Glycine max]
          Length = 836

 Score =  287 bits (734), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 178/582 (30%), Positives = 311/582 (53%), Gaps = 22/582 (3%)

Query: 32  ALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCE 91
           A+ ++  + ++   N+++  + + G++   R+LF+ M ERNVVSWT++I G +      E
Sbjct: 155 AVLKMGLEGDIFVSNSLIHFYAECGKVDLGRKLFDGMLERNVVSWTSLINGYSGRDLSKE 214

Query: 92  ARKLFEEMPERNV----VSWNSMVVGLIRNGELNEARKVFN-----SMPIKNVISWNAMI 142
           A  LF +M E  V    V+   ++    +  +L   +KV +      M +  ++  NA++
Sbjct: 215 AVSLFFQMGEAGVEPNPVTMVCVISACAKLKDLELGKKVCSYISELGMELSTIMV-NALV 273

Query: 143 AGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRM----PRKNVV 198
             Y++C  +  A  +F+E   +N+V + +++S Y       +   +   M    PR + V
Sbjct: 274 DMYMKCGDICAARQIFDECANKNLVMYNTIMSNYVHHEWASDVLVILDEMLQKGPRPDKV 333

Query: 199 SWTAMIGGFAWNGFHK--ESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQN 256
           +  + I   A  G     +S   ++   G+ +  +N +    N++I+ Y++ G+ E A  
Sbjct: 334 TMLSTIAACAQLGDLSVGKSSHAYVLRNGL-EGWDNIS----NAIIDMYMKCGKREAACK 388

Query: 257 LFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEA 316
           +F+ +P +  ++W S+I G +  G +  A+ +F  M +RD V+W  MI  LVQ  +F EA
Sbjct: 389 VFEHMPNKTVVTWNSLIAGLVRDGDMELAWRIFDEMLERDLVSWNTMIGALVQVSMFEEA 448

Query: 317 TYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISM 376
             LF EM+  G+P    T   +  A G    +DL + +   + K +   DL L   L+ M
Sbjct: 449 IELFREMQNQGIPGDRVTMVGIASACGYLGALDLAKWVCTYIEKNDIHVDLQLGTALVDM 508

Query: 377 YAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTF 436
           +++CG   +A ++F  M  RD+ +W + +   +  G     +++F  MLE    P+ V F
Sbjct: 509 FSRCGDPSSAMHVFKRMEKRDVSAWTAAIGVMAMEGNTEGAIELFNEMLEQKVKPDDVVF 568

Query: 437 LGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLP 496
           + +L+ACSH G V +G +LF +M   + I+P   HY  M++LLGRAG ++EA + +  +P
Sbjct: 569 VALLTACSHGGSVDQGRQLFWSMEKAHGIRPHIVHYGCMVDLLGRAGLLEEAVDLIQSMP 628

Query: 497 FEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEH 556
            EP+  +WG+LL AC     N E+A +AA++L +L P     HV+L NIYA++G+  +  
Sbjct: 629 IEPNDVVWGSLLAACRK-HKNVELAHYAAEKLTQLAPERVGIHVLLSNIYASAGKWTDVA 687

Query: 557 KLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
           ++R+ M  KGV+KVPG S +   G I  F SGD+  A+   I
Sbjct: 688 RVRLQMKEKGVQKVPGSSSIEVQGLIHEFTSGDESHAENTHI 729



 Score =  128 bits (322), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 115/480 (23%), Positives = 205/480 (42%), Gaps = 87/480 (18%)

Query: 16  SSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPE----- 70
           S I  Y++ G +D  + LF  M +RNVVS+ ++++G+       EA  LF +M E     
Sbjct: 170 SLIHFYAECGKVDLGRKLFDGMLERNVVSWTSLINGYSGRDLSKEAVSLFFQMGEAGVEP 229

Query: 71  ---------------------RNVVSW---------TAMICGLAD----AGRVCEARKLF 96
                                + V S+         T M+  L D     G +C AR++F
Sbjct: 230 NPVTMVCVISACAKLKDLELGKKVCSYISELGMELSTIMVNALVDMYMKCGDICAARQIF 289

Query: 97  EEMPERNVVSWNSMVVGLIRNGELNEARKVFNSM----PIKNVIS--------------- 137
           +E   +N+V +N+++   + +   ++   + + M    P  + ++               
Sbjct: 290 DECANKNLVMYNTIMSNYVHHEWASDVLVILDEMLQKGPRPDKVTMLSTIAACAQLGDLS 349

Query: 138 ----------------W----NAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYC 177
                           W    NA+I  Y++C     A  +FE M  + VVTW S+I+G  
Sbjct: 350 VGKSSHAYVLRNGLEGWDNISNAIIDMYMKCGKREAACKVFEHMPNKTVVTWNSLIAGLV 409

Query: 178 RAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQS 237
           R G++E  + +F  M  +++VSW  MIG        +E++ LF EM+     G+   +  
Sbjct: 410 RDGDMELAWRIFDEMLERDLVSWNTMIGALVQVSMFEEAIELFREMQNQGIPGDRVTMVG 469

Query: 238 CNSMINGYIRFGRLEEAQNLFDTVPVRD---EISW-TSMIDGYLSVGQVSNAYYLFHNMP 293
             S   GY+  G L+ A+ +   +   D   ++   T+++D +   G  S+A ++F  M 
Sbjct: 470 IASAC-GYL--GALDLAKWVCTYIEKNDIHVDLQLGTALVDMFSRCGDPSSAMHVFKRME 526

Query: 294 DRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQ 353
            RD  AWTA I  +        A  LF EM    V P +  F  L  A     ++D GRQ
Sbjct: 527 KRDVSAWTAAIGVMAMEGNTEGAIELFNEMLEQKVKPDDVVFVALLTACSHGGSVDQGRQ 586

Query: 354 IHCVLMKTES-ESDLILENCLISMYAKCGVIDNAYNIFSNM-VSRDLVSWNSMVMGFSHH 411
           +   + K       ++   C++ +  + G+++ A ++  +M +  + V W S++     H
Sbjct: 587 LFWSMEKAHGIRPHIVHYGCMVDLLGRAGLLEEAVDLIQSMPIEPNDVVWGSLLAACRKH 646



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 97/437 (22%), Positives = 177/437 (40%), Gaps = 119/437 (27%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEM----PERNV 73
           +  Y K G I  A+ +F     +N+V YN ++S ++ +   S+   + +EM    P  + 
Sbjct: 273 VDMYMKCGDICAARQIFDECANKNLVMYNTIMSNYVHHEWASDVLVILDEMLQKGPRPDK 332

Query: 74  VSWTAMICGLADAGRV-------------------------------CEAR----KLFEE 98
           V+  + I   A  G +                               C  R    K+FE 
Sbjct: 333 VTMLSTIAACAQLGDLSVGKSSHAYVLRNGLEGWDNISNAIIDMYMKCGKREAACKVFEH 392

Query: 99  MPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLF 158
           MP + VV+WNS++ GL+R+G++  A ++F+ M  ++++SWN MI   V+  M  EAI LF
Sbjct: 393 MPNKTVVTWNSLIAGLVRDGDMELAWRIFDEMLERDLVSWNTMIGALVQVSMFEEAIELF 452

Query: 159 EEMEER----------------------NVVTW-----------------TSMISGYCRA 179
            EM+ +                      ++  W                 T+++  + R 
Sbjct: 453 REMQNQGIPGDRVTMVGIASACGYLGALDLAKWVCTYIEKNDIHVDLQLGTALVDMFSRC 512

Query: 180 GEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEM---------------- 223
           G+      +F+RM +++V +WTA IG  A  G  + ++ LF EM                
Sbjct: 513 GDPSSAMHVFKRMEKRDVSAWTAAIGVMAMEGNTEGAIELFNEMLEQKVKPDDVVFVALL 572

Query: 224 -----KGICDNGNNC------------NVQSCNSMINGYIRFGRLEEAQNLFDTVPVR-D 265
                 G  D G               ++     M++   R G LEEA +L  ++P+  +
Sbjct: 573 TACSHGGSVDQGRQLFWSMEKAHGIRPHIVHYGCMVDLLGRAGLLEEAVDLIQSMPIEPN 632

Query: 266 EISWTSMIDGYLSVGQVSNAYY----LFHNMPDRDAVAWTAMISGLVQNE-LFVEATYLF 320
           ++ W S++        V  A+Y    L    P+R  V    ++S +  +   + +   + 
Sbjct: 633 DVVWGSLLAACRKHKNVELAHYAAEKLTQLAPER--VGIHVLLSNIYASAGKWTDVARVR 690

Query: 321 MEMRAHGVPPLNATFSV 337
           ++M+  GV  +  + S+
Sbjct: 691 LQMKEKGVQKVPGSSSI 707



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 53/178 (29%), Positives = 89/178 (50%), Gaps = 5/178 (2%)

Query: 272 MIDGYLSVGQVSNAYYLFHNMPDRDA-----VAWTAMISGLVQNELFVEATYLFMEMRAH 326
           +I   + +G + +  Y  +   D D        +  +I G     L  +A  L+++M   
Sbjct: 65  LIASSVQIGTLESLDYARNAFGDDDGNMASLFMYNCLIRGYASAGLGDQAILLYVQMLVM 124

Query: 327 GVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNA 386
           G+ P   TF  L  A      +  G Q+H  ++K   E D+ + N LI  YA+CG +D  
Sbjct: 125 GIVPDKYTFPFLLSACSKILALSEGVQVHGAVLKMGLEGDIFVSNSLIHFYAECGKVDLG 184

Query: 387 YNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACS 444
             +F  M+ R++VSW S++ G+S   L+ E + +F  M E+G  PN VT + ++SAC+
Sbjct: 185 RKLFDGMLERNVVSWTSLINGYSGRDLSKEAVSLFFQMGEAGVEPNPVTMVCVISACA 242



 Score = 47.0 bits (110), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 44/148 (29%), Positives = 73/148 (49%), Gaps = 22/148 (14%)

Query: 352 RQIHCVLMKT-----ESESDLILENCLISMYAKCGVI---DNAYNIFS----NMVSRDLV 399
           +Q+HC +MK      +  S+L   N LI+   + G +   D A N F     NM S  L 
Sbjct: 42  KQLHCDMMKKGLLCHKPASNL---NKLIASSVQIGTLESLDYARNAFGDDDGNMAS--LF 96

Query: 400 SWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAM 459
            +N ++ G++  GL ++ + ++  ML  G  P+  TF  +LSACS    +S G ++  A 
Sbjct: 97  MYNCLIRGYASAGLGDQAILLYVQMLVMGIVPDKYTFPFLLSACSKILALSEGVQVHGA- 155

Query: 460 FDVYKIQPGPEHYV--SMINLLGRAGKI 485
             V K+    + +V  S+I+     GK+
Sbjct: 156 --VLKMGLEGDIFVSNSLIHFYAECGKV 181


>gi|414586383|tpg|DAA36954.1| TPA: hypothetical protein ZEAMMB73_991125 [Zea mays]
          Length = 1021

 Score =  287 bits (734), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 187/629 (29%), Positives = 311/629 (49%), Gaps = 58/629 (9%)

Query: 15  TSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMP----- 69
           +S I  Y K G I +AK +F    ++N+V +NA+L GF+QN    E  ++F+ M      
Sbjct: 363 SSLINLYVKHGCISDAKKVFDFSTEKNIVMWNAILYGFVQNELQEETIQMFQYMRRADLE 422

Query: 70  ----------------------------------ERNVVSWTAMICGLADAGRVCEARKL 95
                                             + ++    AM+   +  G +  A+ L
Sbjct: 423 ADDFTFVSVLGACINLYSLDLGRQVHCITIKNGMDADLFVANAMLDMYSKLGAIDVAKAL 482

Query: 96  FEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAI 155
           F  +P ++ VSWN+++VGL  N E  EA  +   M    +       A  +  C    AI
Sbjct: 483 FSLIPVKDSVSWNALIVGLAHNEEEGEAINMLKRMKFYGIALDEVSFATAINACSNIWAI 542

Query: 156 VLFEEMEERNV--------VTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGF 207
              +++   ++           +S+I  Y + G+VE    +   +   ++V   A+I G 
Sbjct: 543 ETGKQIHSASIKYNVCSNHAVGSSLIDLYSKFGDVESSRKVLAHVDASSIVPINALITGL 602

Query: 208 AWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIR-----FGRLEEAQNLFDTVP 262
             N    E++ LF   + +  +G   +  +  S+++G  R      G+      L   + 
Sbjct: 603 VQNNREDEAIELF---QQVLKDGFKPSNFTFTSILSGCTRPVSSVIGKQVHCYTLKSAIL 659

Query: 263 VRDEISWTSMIDGYLSVGQVSNAYYLFHNMPD-RDAVAWTAMISGLVQNELFVEATYLFM 321
            +D     S++  YL    + +A  L   +PD ++ V WTA ISG  QN   V++  +F 
Sbjct: 660 NQDTSLGISLVGIYLKCKLLEDANKLLEEVPDHKNLVEWTATISGYAQNGYSVQSLVMFW 719

Query: 322 EMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCG 381
            MR++ V    ATF+ +  A    A +  G++IH +++K+   S     + L+ MY+KCG
Sbjct: 720 RMRSYDVRSDEATFTSVLKACSEMAALTDGKEIHGLIVKSGFVSYETATSALMDMYSKCG 779

Query: 382 VIDNAYNIFSNMVSR-DLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGIL 440
            + +++ IF  + +R +++ WNSM++GF+ +G ANE L +F+ M ES   P+ VT LG+L
Sbjct: 780 DVISSFEIFKELKNRQNIMPWNSMIVGFAKNGYANEALLLFQKMQESQIKPDDVTLLGVL 839

Query: 441 SACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPD 500
            ACSHAGL+S G   F++M  VY I P  +HY  +I+LLGR G +++A+E + +LPF  D
Sbjct: 840 IACSHAGLISEGLHFFDSMSQVYGIVPRVDHYACLIDLLGRGGHLQKAQEVIDQLPFRAD 899

Query: 501 HRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRM 560
             IW   L AC     + E  + AAK+L+E++P ++  +V L +++AA+G  VE    R 
Sbjct: 900 GVIWATYLAACQM-HKDEERGKVAAKKLVEMEPQSSSTYVFLSSLHAAAGNWVEAKVARE 958

Query: 561 DMGLKGVRKVPGCSWLMRNGGIQMFLSGD 589
            M  KGV K PGCSW+       +F+  D
Sbjct: 959 AMREKGVMKFPGCSWITVGNKQSVFVVQD 987



 Score =  168 bits (426), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 103/383 (26%), Positives = 195/383 (50%), Gaps = 12/383 (3%)

Query: 118 GELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEER----NVVTWTSMI 173
           GE+++AR++F+ +   + I W +MIAGY       +A+ LF  ME+     + VT  ++I
Sbjct: 206 GEVDDARRMFDGIACPDTICWTSMIAGYHRVGRYQQALALFSRMEKMGSVPDQVTCVTII 265

Query: 174 SGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNC 233
           S     G + +   L +R+   + V+W A+I  ++ +G   E   L+ +MK     G   
Sbjct: 266 STLASMGRLGDARTLLKRIRMTSTVAWNAVIASYSQSGLDSEVFGLYKDMK---KQGLMP 322

Query: 234 NVQSCNSMINGYIRFGRLEEAQNLFDTVPVR----DEISWTSMIDGYLSVGQVSNAYYLF 289
              +  S+++        +E + +  T        +    +S+I+ Y+  G +S+A  +F
Sbjct: 323 TRSTFASILSAAANMTAFDEGRQIHATAVKHGLDANVFVGSSLINLYVKHGCISDAKKVF 382

Query: 290 HNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANID 349
               +++ V W A++ G VQNEL  E   +F  MR   +   + TF  + GA     ++D
Sbjct: 383 DFSTEKNIVMWNAILYGFVQNELQEETIQMFQYMRRADLEADDFTFVSVLGACINLYSLD 442

Query: 350 LGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFS 409
           LGRQ+HC+ +K   ++DL + N ++ MY+K G ID A  +FS +  +D VSWN++++G +
Sbjct: 443 LGRQVHCITIKNGMDADLFVANAMLDMYSKLGAIDVAKALFSLIPVKDSVSWNALIVGLA 502

Query: 410 HHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGP 469
           H+    E + + + M   G   + V+F   ++ACS+   +  G ++ +A    Y +    
Sbjct: 503 HNEEEGEAINMLKRMKFYGIALDEVSFATAINACSNIWAIETGKQIHSASIK-YNVCSNH 561

Query: 470 EHYVSMINLLGRAGKIKEAEEFV 492
               S+I+L  + G ++ + + +
Sbjct: 562 AVGSSLIDLYSKFGDVESSRKVL 584



 Score =  149 bits (375), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 104/474 (21%), Positives = 213/474 (44%), Gaps = 81/474 (17%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPER----NV 73
           +  Y+K G +D+A+ +F  +   + + + +M++G+ + GR  +A  LF  M +     + 
Sbjct: 199 VDMYAKCGEVDDARRMFDGIACPDTICWTSMIAGYHRVGRYQQALALFSRMEKMGSVPDQ 258

Query: 74  VSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIK 133
           V+   +I  LA  GR+ +AR L + +   + V+WN+++    ++G  +E   ++  M  +
Sbjct: 259 VTCVTIISTLASMGRLGDARTLLKRIRMTSTVAWNAVIASYSQSGLDSEVFGLYKDMKKQ 318

Query: 134 NVISWNAMIAGYVECCMMGEAIVLFEEMEE-----------RNVVTWTSMISGYCRAGEV 182
            ++   +  A  +        +  F+E  +            NV   +S+I+ Y + G +
Sbjct: 319 GLMPTRSTFASILSA---AANMTAFDEGRQIHATAVKHGLDANVFVGSSLINLYVKHGCI 375

Query: 183 EEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMK---------------GIC 227
            +   +F     KN+V W A++ GF  N   +E++ +F  M+               G C
Sbjct: 376 SDAKKVFDFSTEKNIVMWNAILYGFVQNELQEETIQMFQYMRRADLEADDFTFVSVLGAC 435

Query: 228 -----------------DNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWT 270
                             NG + ++   N+M++ Y + G ++ A+ LF  +PV+D +S  
Sbjct: 436 INLYSLDLGRQVHCITIKNGMDADLFVANAMLDMYSKLGAIDVAKALFSLIPVKDSVS-- 493

Query: 271 SMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPP 330
                                        W A+I GL  NE   EA  +   M+ +G+  
Sbjct: 494 -----------------------------WNALIVGLAHNEEEGEAINMLKRMKFYGIAL 524

Query: 331 LNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIF 390
              +F+    A      I+ G+QIH   +K    S+  + + LI +Y+K G ++++  + 
Sbjct: 525 DEVSFATAINACSNIWAIETGKQIHSASIKYNVCSNHAVGSSLIDLYSKFGDVESSRKVL 584

Query: 391 SNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACS 444
           +++ +  +V  N+++ G   +   +E +++F+ +L+ G  P++ TF  ILS C+
Sbjct: 585 AHVDASSIVPINALITGLVQNNREDEAIELFQQVLKDGFKPSNFTFTSILSGCT 638



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 94/376 (25%), Positives = 174/376 (46%), Gaps = 53/376 (14%)

Query: 233 CNVQSCNS-MINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHN 291
           C+   C + +++ Y + G +++A+ +FD +   D I WTSMI GY  VG+   A  LF  
Sbjct: 189 CSSVFCQAGLVDMYAKCGEVDDARRMFDGIACPDTICWTSMIAGYHRVGRYQQALALFSR 248

Query: 292 M------PDR-----------------------------DAVAWTAMISGLVQNELFVEA 316
           M      PD+                               VAW A+I+   Q+ L  E 
Sbjct: 249 MEKMGSVPDQVTCVTIISTLASMGRLGDARTLLKRIRMTSTVAWNAVIASYSQSGLDSEV 308

Query: 317 TYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISM 376
             L+ +M+  G+ P  +TF+ +  AA      D GRQIH   +K   ++++ + + LI++
Sbjct: 309 FGLYKDMKKQGLMPTRSTFASILSAAANMTAFDEGRQIHATAVKHGLDANVFVGSSLINL 368

Query: 377 YAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTF 436
           Y K G I +A  +F     +++V WN+++ GF  + L  ET+++F+ M  +    +  TF
Sbjct: 369 YVKHGCISDAKKVFDFSTEKNIVMWNAILYGFVQNELQEETIQMFQYMRRADLEADDFTF 428

Query: 437 LGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYV----SMINLLGRAGKIKEAEEFV 492
           + +L AC +   +  G ++         I+ G +  +    +M+++  + G I  A+   
Sbjct: 429 VSVLGACINLYSLDLGRQVH-----CITIKNGMDADLFVANAMLDMYSKLGAIDVAKALF 483

Query: 493 LRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRL----LELDPLNAPAHVVLC-NIYA 547
             +P + D   W AL+      E   E A +  KR+    + LD ++    +  C NI+A
Sbjct: 484 SLIPVK-DSVSWNALIVGLAHNEEEGE-AINMLKRMKFYGIALDEVSFATAINACSNIWA 541

Query: 548 -ASGRHVEEHKLRMDM 562
             +G+ +    ++ ++
Sbjct: 542 IETGKQIHSASIKYNV 557



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 37/121 (30%), Positives = 63/121 (52%)

Query: 327 GVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNA 386
           G  P     +V+  A      ++ GRQ+HC ++K+   S +  +  L+ MYAKCG +D+A
Sbjct: 152 GSTPDQFGIAVVLSACSRLGALEHGRQVHCDVLKSGFCSSVFCQAGLVDMYAKCGEVDDA 211

Query: 387 YNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHA 446
             +F  +   D + W SM+ G+   G   + L +F  M + G+ P+ VT + I+S  +  
Sbjct: 212 RRMFDGIACPDTICWTSMIAGYHRVGRYQQALALFSRMEKMGSVPDQVTCVTIISTLASM 271

Query: 447 G 447
           G
Sbjct: 272 G 272


>gi|42563517|ref|NP_187185.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546760|sp|Q9MA85.2|PP215_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g05340
 gi|332640702|gb|AEE74223.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 658

 Score =  287 bits (734), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 171/538 (31%), Positives = 280/538 (52%), Gaps = 17/538 (3%)

Query: 73  VVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKV------ 126
           +V W +++   A  G++ +A KLF+EMP R+V+S N +  G +RN E      +      
Sbjct: 90  LVVWNSLLSLYAKCGKLVDAIKLFDEMPMRDVISQNIVFYGFLRNRETESGFVLLKRMLG 149

Query: 127 ---FNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEME--ERNVVTWTSMISGYCRAGE 181
              F+   +  V+S    +    E C++ + I     +   ++ +     +I+ Y + G 
Sbjct: 150 SGGFDHATLTIVLS----VCDTPEFCLVTKMIHALAILSGYDKEISVGNKLITSYFKCGC 205

Query: 182 VEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSM 241
              G  +F  M  +NV++ TA+I G   N  H++ L LF  M+    + N+    S  + 
Sbjct: 206 SVSGRGVFDGMSHRNVITLTAVISGLIENELHEDGLRLFSLMRRGLVHPNSVTYLSALAA 265

Query: 242 INGYIRFGRLEEAQNLFDTVPVRDEISWTS-MIDGYLSVGQVSNAYYLFHNMPDRDAVAW 300
            +G  R    ++   L     +  E+   S ++D Y   G + +A+ +F +  + D V+ 
Sbjct: 266 CSGSQRIVEGQQIHALLWKYGIESELCIESALMDMYSKCGSIEDAWTIFESTTEVDEVSM 325

Query: 301 TAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMK 360
           T ++ GL QN    EA   F+ M   GV       S + G +    ++ LG+Q+H +++K
Sbjct: 326 TVILVGLAQNGSEEEAIQFFIRMLQAGVEIDANVVSAVLGVSFIDNSLGLGKQLHSLVIK 385

Query: 361 TESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKV 420
            +   +  + N LI+MY+KCG + ++  +F  M  R+ VSWNSM+  F+ HG     LK+
Sbjct: 386 RKFSGNTFVNNGLINMYSKCGDLTDSQTVFRRMPKRNYVSWNSMIAAFARHGHGLAALKL 445

Query: 421 FESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLG 480
           +E M      P  VTFL +L ACSH GL+ +G EL N M +V+ I+P  EHY  +I++LG
Sbjct: 446 YEEMTTLEVKPTDVTFLSLLHACSHVGLIDKGRELLNEMKEVHGIEPRTEHYTCIIDMLG 505

Query: 481 RAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHV 540
           RAG +KEA+ F+  LP +PD +IW ALLGAC F  G+ E+ E+AA++L +  P ++ AH+
Sbjct: 506 RAGLLKEAKSFIDSLPLKPDCKIWQALLGACSF-HGDTEVGEYAAEQLFQTAPDSSSAHI 564

Query: 541 VLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
           ++ NIY++ G+  E  K    M   GV K  G S +        F+  DK+  Q   I
Sbjct: 565 LIANIYSSRGKWKERAKTIKRMKAMGVTKETGISSIEIEHKTHSFVVEDKLHPQAEAI 622



 Score =  122 bits (307), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 104/414 (25%), Positives = 186/414 (44%), Gaps = 51/414 (12%)

Query: 160 EMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLL 219
           ++    +V W S++S Y + G++ +   LF  MP ++V+S   +  GF  N   +   +L
Sbjct: 84  DIHRNALVVWNSLLSLYAKCGKLVDAIKLFDEMPMRDVISQNIVFYGFLRNRETESGFVL 143

Query: 220 FIEMKG--------------ICDNGNNCNVQS---CNSMINGYIRFGRLEEAQNLFDTVP 262
              M G              +CD    C V       ++++GY +               
Sbjct: 144 LKRMLGSGGFDHATLTIVLSVCDTPEFCLVTKMIHALAILSGYDK--------------- 188

Query: 263 VRDEIS-WTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFM 321
              EIS    +I  Y   G   +   +F  M  R+ +  TA+ISGL++NEL  +   LF 
Sbjct: 189 ---EISVGNKLITSYFKCGCSVSGRGVFDGMSHRNVITLTAVISGLIENELHEDGLRLFS 245

Query: 322 EMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCG 381
            MR   V P + T+     A   +  I  G+QIH +L K   ES+L +E+ L+ MY+KCG
Sbjct: 246 LMRRGLVHPNSVTYLSALAACSGSQRIVEGQQIHALLWKYGIESELCIESALMDMYSKCG 305

Query: 382 VIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILS 441
            I++A+ IF +    D VS   +++G + +G   E ++ F  ML++G   ++     +L 
Sbjct: 306 SIEDAWTIFESTTEVDEVSMTVILVGLAQNGSEEEAIQFFIRMLQAGVEIDANVVSAVLG 365

Query: 442 ACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVS--MINLLGRAGKIKEAEEFVLRLPFEP 499
                  +  G +L +    V K +     +V+  +IN+  + G + +++    R+P + 
Sbjct: 366 VSFIDNSLGLGKQLHSL---VIKRKFSGNTFVNNGLINMYSKCGDLTDSQTVFRRMP-KR 421

Query: 500 DHRIWGALLGACG-FCEGNAEIAEHAAKRLLELDP--------LNAPAHVVLCN 544
           ++  W +++ A      G A +  +     LE+ P        L+A +HV L +
Sbjct: 422 NYVSWNSMIAAFARHGHGLAALKLYEEMTTLEVKPTDVTFLSLLHACSHVGLID 475



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 105/468 (22%), Positives = 194/468 (41%), Gaps = 74/468 (15%)

Query: 6   HPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLF 65
           H  +LVV   S ++ Y+K G + +A  LF  MP R+V+S N +  GFL+N        L 
Sbjct: 86  HRNALVV-WNSLLSLYAKCGKLVDAIKLFDEMPMRDVISQNIVFYGFLRNRETESGFVLL 144

Query: 66  EEMPERNVVSWTAM--ICGLADAGRVCEARKLFEEMP-----ERNVVSWNSMVVGLIRNG 118
           + M          +  +  + D    C   K+   +      ++ +   N ++    + G
Sbjct: 145 KRMLGSGGFDHATLTIVLSVCDTPEFCLVTKMIHALAILSGYDKEISVGNKLITSYFKCG 204

Query: 119 ELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEME----ERNVVTWTSMIS 174
                R VF+ M  +NVI+  A+I+G +E  +  + + LF  M       N VT+ S ++
Sbjct: 205 CSVSGRGVFDGMSHRNVITLTAVISGLIENELHEDGLRLFSLMRRGLVHPNSVTYLSALA 264

Query: 175 G-----------------------------------YCRAGEVEEGYCLFRRMPRKNVVS 199
                                               Y + G +E+ + +F      + VS
Sbjct: 265 ACSGSQRIVEGQQIHALLWKYGIESELCIESALMDMYSKCGSIEDAWTIFESTTEVDEVS 324

Query: 200 WTAMIGGFAWNGFHKESLLLFIEM--KGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNL 257
            T ++ G A NG  +E++  FI M   G+  + N  +     S I+  +  G+       
Sbjct: 325 MTVILVGLAQNGSEEEAIQFFIRMLQAGVEIDANVVSAVLGVSFIDNSLGLGK------Q 378

Query: 258 FDTVPVRDEISWTS-----MIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNEL 312
             ++ ++ + S  +     +I+ Y   G ++++  +F  MP R+ V+W +MI+   ++  
Sbjct: 379 LHSLVIKRKFSGNTFVNNGLINMYSKCGDLTDSQTVFRRMPKRNYVSWNSMIAAFARHGH 438

Query: 313 FVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGR-------QIHCVLMKTESES 365
            + A  L+ EM    V P + TF  L  A      ID GR       ++H +  +TE  +
Sbjct: 439 GLAALKLYEEMTTLEVKPTDVTFLSLLHACSHVGLIDKGRELLNEMKEVHGIEPRTEHYT 498

Query: 366 DLILENCLISMYAKCGVIDNAYNIFSNM-VSRDLVSWNSMVMGFSHHG 412
                 C+I M  + G++  A +   ++ +  D   W +++   S HG
Sbjct: 499 ------CIIDMLGRAGLLKEAKSFIDSLPLKPDCKIWQALLGACSFHG 540



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 73/295 (24%), Positives = 125/295 (42%), Gaps = 52/295 (17%)

Query: 21  YSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNV---VSWT 77
           YSK G I++A  +F+   + + VS   +L G  QNG   EA + F  M +  V    +  
Sbjct: 301 YSKCGSIEDAWTIFESTTEVDEVSMTVILVGLAQNGSEEEAIQFFIRMLQAGVEIDANVV 360

Query: 78  AMICGLADAGRVCEARKLFEEMPERNVVSWNSMV-VGLI----RNGELNEARKVFNSMPI 132
           + + G++         K    +  +   S N+ V  GLI    + G+L +++ VF  MP 
Sbjct: 361 SAVLGVSFIDNSLGLGKQLHSLVIKRKFSGNTFVNNGLINMYSKCGDLTDSQTVFRRMPK 420

Query: 133 KNVISWNAMIAGYVECCMMGEAIVLFEEMEERNV----VTWTSMISGYCRAGEVEEGYCL 188
           +N +SWN+MIA +        A+ L+EEM    V    VT+ S++      G +++G  L
Sbjct: 421 RNYVSWNSMIAAFARHGHGLAALKLYEEMTTLEVKPTDVTFLSLLHACSHVGLIDKGREL 480

Query: 189 FRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRF 248
              M                             E+ GI         +    +I+   R 
Sbjct: 481 LNEMK----------------------------EVHGI-----EPRTEHYTCIIDMLGRA 507

Query: 249 GRLEEAQNLFDTVPVRDEIS-WTSMI-----DGYLSVGQVSNAYYLFHNMPDRDA 297
           G L+EA++  D++P++ +   W +++      G   VG+ + A  LF   PD  +
Sbjct: 508 GLLKEAKSFIDSLPLKPDCKIWQALLGACSFHGDTEVGEYA-AEQLFQTAPDSSS 561



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/149 (28%), Positives = 80/149 (53%), Gaps = 13/149 (8%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNV---- 73
           I  YSK G + +++ +F+ MP+RN VS+N+M++ F ++G    A +L+EEM    V    
Sbjct: 399 INMYSKCGDLTDSQTVFRRMPKRNYVSWNSMIAAFARHGHGLAALKLYEEMTTLEVKPTD 458

Query: 74  VSWTAMICGLADAGRVCEARKLFEEMPERNVVS-----WNSMVVGLIRNGELNEARKVFN 128
           V++ +++   +  G + + R+L  EM E + +      +  ++  L R G L EA+   +
Sbjct: 459 VTFLSLLHACSHVGLIDKGRELLNEMKEVHGIEPRTEHYTCIIDMLGRAGLLKEAKSFID 518

Query: 129 SMPIK-NVISWNAMIAGYVECCMMGEAIV 156
           S+P+K +   W A++     C   G+  V
Sbjct: 519 SLPLKPDCKIWQALLGA---CSFHGDTEV 544


>gi|302805550|ref|XP_002984526.1| hypothetical protein SELMODRAFT_181046 [Selaginella moellendorffii]
 gi|300147914|gb|EFJ14576.1| hypothetical protein SELMODRAFT_181046 [Selaginella moellendorffii]
          Length = 792

 Score =  287 bits (734), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 174/611 (28%), Positives = 308/611 (50%), Gaps = 56/611 (9%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEM------PER 71
           +  Y K G ++EA+ +F  +  R+ VS+ +M+S +  NG   EA  L+++M      P+ 
Sbjct: 188 VNMYGKCGSVEEARKVFDGIKNRDAVSWTSMISSYANNGFCDEALDLYQQMDADGIQPDS 247

Query: 72  NVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMP 131
              +   + C     G+   AR +   M    V S  +++    R G+++ AR+ F  + 
Sbjct: 248 ITFTSALLACTKLVDGKAIHARIVSSNMESDFVGS--ALINMYARCGDVSSARQAFEKIQ 305

Query: 132 IKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNV------------------------- 166
            K+V+ W +++  YV+ C   EA+ L+  M+   V                         
Sbjct: 306 NKHVVCWTSLMTAYVQTCHYREALDLYGRMDHEGVHADGVTYVTALGACASLGALKEGKA 365

Query: 167 -------------VTWTSMISGYCRAGEVEEGYCLFRRMPRK-NVVSWTAMIGGFAWNGF 212
                        V  T++++ Y + GE++    +F R+ +K NV  WTAMI  +A  G 
Sbjct: 366 IHSRVFECGFQSLVVHTALLTMYAKCGELDAARAVFNRVRQKRNVYCWTAMISAYAQAGH 425

Query: 213 HKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEIS---- 268
            +E+L L+ +M      G   N  + ++++      G LE    +   V   +  S    
Sbjct: 426 TQEALELYDQMVA---EGTRPNEYTFSNVLAACSSSGDLEAGMKIHGHVENSELASNVAV 482

Query: 269 WTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGV 328
             +++  Y   G +  A   F     +D V+W AMI    Q+ L  EA  L+  M + GV
Sbjct: 483 QNALVTMYAKCGSLELAKSAFEASGRKDLVSWNAMIGAYAQHGLGREALDLYQTMTSQGV 542

Query: 329 PPLNATFSVLFGAAGATANIDLGRQIHCVLMKTES-ESDLILENCLISMYAKCGVIDNAY 387
            P   T +    A   + ++ LGR+IH  ++K +S  S L+++  L++MY +CG ++ A 
Sbjct: 543 LPDEVTIASSLSACAISGSLQLGREIHSRVLKNQSFRSSLMVQTALVNMYGRCGRLETAR 602

Query: 388 NIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAG 447
           ++F +M  RD++SW +M   ++  G A++ L ++  M+  G  PN +TF  IL  CSHAG
Sbjct: 603 SMFEDMGQRDVLSWTAMTSAYAQQGHADQVLDLYLEMVLHGIRPNEITFTSILVGCSHAG 662

Query: 448 LVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGAL 507
           L++RG E F  M   +++ P  EH++ M++LLGR+G++++AE  V  +P++PD   W  +
Sbjct: 663 LLARGVECFLEMQSEHEVVPIREHFLCMVDLLGRSGRLRDAEALVESMPYQPDSVAWLTV 722

Query: 508 LGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGV 567
           LG+C     +A+ A+ AA+R+ ELDP N   + +L +I+ A+G   E  ++++ M   G+
Sbjct: 723 LGSCK-THSDADTAKRAARRVKELDPENTSLYSLLSSIFTAAGLPQEALEVQLSMKEMGL 781

Query: 568 RKVPGCSWLMR 578
           +K PG S + +
Sbjct: 782 KKPPGQSLIEK 792



 Score =  197 bits (501), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 138/521 (26%), Positives = 255/521 (48%), Gaps = 53/521 (10%)

Query: 18  ITKYSKRGFIDEAKALFQ-LMPQRNVVSYNAMLSGFLQNGRLSEA----RRLFEEMPERN 72
           I  Y   G I  A+A FQ     + V  YN MLS + +NG  + A     R+ EE PE +
Sbjct: 84  IQMYGNCGEIHLARAAFQNFASIKAVACYNQMLSAYGKNGLWNRALELYHRMCEEGPEPD 143

Query: 73  VVSWTAMICGLADAGRVCEARKLFE---EMPE--RNVVSWNSMVVGLI-RNGELNEARKV 126
            +++  ++   +  G + EAR++     E P+  R+ +S  + +V +  + G + EARKV
Sbjct: 144 KITYFIVLGSCSAVGSLREAREIHASIIEAPQIIRDNLSLQNALVNMYGKCGSVEEARKV 203

Query: 127 FNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEME----ERNVVTWTS----------- 171
           F+ +  ++ +SW +MI+ Y       EA+ L+++M+    + + +T+TS           
Sbjct: 204 FDGIKNRDAVSWTSMISSYANNGFCDEALDLYQQMDADGIQPDSITFTSALLACTKLVDG 263

Query: 172 --------------------MISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNG 211
                               +I+ Y R G+V      F ++  K+VV WT+++  +    
Sbjct: 264 KAIHARIVSSNMESDFVGSALINMYARCGDVSSARQAFEKIQNKHVVCWTSLMTAYVQTC 323

Query: 212 FHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTV---PVRDEIS 268
            ++E+L L+  M      G + +  +  + +      G L+E + +   V     +  + 
Sbjct: 324 HYREALDLYGRMD---HEGVHADGVTYVTALGACASLGALKEGKAIHSRVFECGFQSLVV 380

Query: 269 WTSMIDGYLSVGQVSNAYYLFHNM-PDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHG 327
            T+++  Y   G++  A  +F+ +   R+   WTAMIS   Q     EA  L+ +M A G
Sbjct: 381 HTALLTMYAKCGELDAARAVFNRVRQKRNVYCWTAMISAYAQAGHTQEALELYDQMVAEG 440

Query: 328 VPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAY 387
             P   TFS +  A  ++ +++ G +IH  +  +E  S++ ++N L++MYAKCG ++ A 
Sbjct: 441 TRPNEYTFSNVLAACSSSGDLEAGMKIHGHVENSELASNVAVQNALVTMYAKCGSLELAK 500

Query: 388 NIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAG 447
           + F     +DLVSWN+M+  ++ HGL  E L ++++M   G  P+ VT    LSAC+ +G
Sbjct: 501 SAFEASGRKDLVSWNAMIGAYAQHGLGREALDLYQTMTSQGVLPDEVTIASSLSACAISG 560

Query: 448 LVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEA 488
            +  G E+ + +      +       +++N+ GR G+++ A
Sbjct: 561 SLQLGREIHSRVLKNQSFRSSLMVQTALVNMYGRCGRLETA 601



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 102/430 (23%), Positives = 188/430 (43%), Gaps = 56/430 (13%)

Query: 96  FEEMPERN---VVSWNSMVVGLIRNGELNEA----RKVFNSMPIKNVISWNAMIAGYVEC 148
            E++ +R    V  ++ ++    R G L E     R +  +   +N    N +I  Y  C
Sbjct: 31  LEQLDQRRHGYVELYDELLQQCGRLGSLAEGKLVHRHLLRTGHGRNQFLGNLLIQMYGNC 90

Query: 149 CMMGEAIVLFEEMEE-RNVVTWTSMISGYCRAGEVEEGYCLFRRM----PRKNVVSWTAM 203
             +  A   F+     + V  +  M+S Y + G       L+ RM    P  + +++  +
Sbjct: 91  GEIHLARAAFQNFASIKAVACYNQMLSAYGKNGLWNRALELYHRMCEEGPEPDKITYFIV 150

Query: 204 IGGFAWNGFHKESLLL---FIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDT 260
           +G  +  G  +E+  +    IE   I  +  N ++Q  N+++N Y + G +EEA+ +FD 
Sbjct: 151 LGSCSAVGSLREAREIHASIIEAPQIIRD--NLSLQ--NALVNMYGKCGSVEEARKVFDG 206

Query: 261 VPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLF 320
           +  RD +SWTSMI  Y                                 N    EA  L+
Sbjct: 207 IKNRDAVSWTSMISSY-------------------------------ANNGFCDEALDLY 235

Query: 321 MEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKC 380
            +M A G+ P + TF+    A   T  +D G+ IH  ++ +  ESD +  + LI+MYA+C
Sbjct: 236 QQMDADGIQPDSITFTSALLA--CTKLVD-GKAIHARIVSSNMESDFV-GSALINMYARC 291

Query: 381 GVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGIL 440
           G + +A   F  + ++ +V W S++  +       E L ++  M   G H + VT++  L
Sbjct: 292 GDVSSARQAFEKIQNKHVVCWTSLMTAYVQTCHYREALDLYGRMDHEGVHADGVTYVTAL 351

Query: 441 SACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPD 500
            AC+  G +  G  + + +F+    Q    H  +++ +  + G++  A     R+  + +
Sbjct: 352 GACASLGALKEGKAIHSRVFEC-GFQSLVVH-TALLTMYAKCGELDAARAVFNRVRQKRN 409

Query: 501 HRIWGALLGA 510
              W A++ A
Sbjct: 410 VYCWTAMISA 419



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 91/341 (26%), Positives = 153/341 (44%), Gaps = 39/341 (11%)

Query: 247 RFGRLEEAQ----NLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVA-WT 301
           R G L E +    +L  T   R++     +I  Y + G++  A   F N     AVA + 
Sbjct: 54  RLGSLAEGKLVHRHLLRTGHGRNQFLGNLLIQMYGNCGEIHLARAAFQNFASIKAVACYN 113

Query: 302 AMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKT 361
            M+S   +N L+  A  L+  M   G  P   T+ ++ G+  A  ++   R+IH  +++ 
Sbjct: 114 QMLSAYGKNGLWNRALELYHRMCEEGPEPDKITYFIVLGSCSAVGSLREAREIHASIIEA 173

Query: 362 ES--ESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLK 419
                 +L L+N L++MY KCG ++ A  +F  + +RD VSW SM+  ++++G  +E L 
Sbjct: 174 PQIIRDNLSLQNALVNMYGKCGSVEEARKVFDGIKNRDAVSWTSMISSYANNGFCDEALD 233

Query: 420 VFESMLESGTHPNSVTFLGILSACS--------HAGLVSRGWE---LFNAMFDVY----- 463
           +++ M   G  P+S+TF   L AC+        HA +VS   E   + +A+ ++Y     
Sbjct: 234 LYQQMDADGIQPDSITFTSALLACTKLVDGKAIHARIVSSNMESDFVGSALINMYARCGD 293

Query: 464 ---------KIQPGPEHYV---SMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGAC 511
                    KIQ   +H V   S++    +    +EA +   R+  E  H      + A 
Sbjct: 294 VSSARQAFEKIQ--NKHVVCWTSLMTAYVQTCHYREALDLYGRMDHEGVHADGVTYVTAL 351

Query: 512 GFCEGNAEIAEHAA--KRLLELDPLNAPAHVVLCNIYAASG 550
           G C     + E  A   R+ E    +   H  L  +YA  G
Sbjct: 352 GACASLGALKEGKAIHSRVFECGFQSLVVHTALLTMYAKCG 392



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 53/229 (23%), Positives = 106/229 (46%), Gaps = 9/229 (3%)

Query: 321 MEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKC 380
           ++ R HG   L   +  L    G   ++  G+ +H  L++T    +  L N LI MY  C
Sbjct: 34  LDQRRHGYVEL---YDELLQQCGRLGSLAEGKLVHRHLLRTGHGRNQFLGNLLIQMYGNC 90

Query: 381 GVIDNAYNIFSNMVS-RDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGI 439
           G I  A   F N  S + +  +N M+  +  +GL N  L+++  M E G  P+ +T+  +
Sbjct: 91  GEIHLARAAFQNFASIKAVACYNQMLSAYGKNGLWNRALELYHRMCEEGPEPDKITYFIV 150

Query: 440 LSACSHAGLVSRGWELFNAMFDVYK-IQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFE 498
           L +CS  G +    E+  ++ +  + I+       +++N+ G+ G ++EA + V      
Sbjct: 151 LGSCSAVGSLREAREIHASIIEAPQIIRDNLSLQNALVNMYGKCGSVEEARK-VFDGIKN 209

Query: 499 PDHRIWGALLGAC---GFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCN 544
            D   W +++ +    GFC+   ++ +      ++ D +   + ++ C 
Sbjct: 210 RDAVSWTSMISSYANNGFCDEALDLYQQMDADGIQPDSITFTSALLACT 258


>gi|168042957|ref|XP_001773953.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162674797|gb|EDQ61301.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 905

 Score =  287 bits (734), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 183/637 (28%), Positives = 310/637 (48%), Gaps = 81/637 (12%)

Query: 11  VVHLTSSITKYSKRGFIDEAKALFQLMPQRNV----VSYNAMLSGFLQNGRLSEARRL-- 64
           VV   + +  Y+++ ++ E   LF  M    +    V+Y  +L  F     L E +R+  
Sbjct: 194 VVSYNTMLGLYAQKAYVKECLGLFGQMSSEGISPDKVTYINLLDAFTTPSMLDEGKRIHK 253

Query: 65  --FEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNE 122
              EE    ++   TA++      G V  A++ F+ + +R+VV +N+++  L ++G   E
Sbjct: 254 LTVEEGLNSDIRVGTALVTMCVRCGDVDSAKQAFKGIADRDVVVYNALIAALAQHGHNVE 313

Query: 123 ARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIV--------LFEEMEERNVVTWTSMIS 174
           A + +  M    V          +  C   +A+         + E+    +V    ++IS
Sbjct: 314 AFEQYYRMRSDGVALNRTTYLSILNACSTSKALEAGKLIHSHISEDGHSSDVQIGNALIS 373

Query: 175 GYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKG--------- 225
            Y R G++ +   LF  MP+++++SW A+I G+A      E++ L+ +M+          
Sbjct: 374 MYARCGDLPKARELFYTMPKRDLISWNAIIAGYARREDRGEAMRLYKQMQSEGVKPGRVT 433

Query: 226 -----------------------ICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVP 262
                                  I  +G   N    N+++N Y R G L EAQN+F+   
Sbjct: 434 FLHLLSACANSSAYADGKMIHEDILRSGIKSNGHLANALMNMYRRCGSLMEAQNVFEGTQ 493

Query: 263 VRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFME 322
            R                               D ++W +MI+G  Q+  +  A  LF E
Sbjct: 494 AR-------------------------------DVISWNSMIAGHAQHGSYETAYKLFQE 522

Query: 323 MRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGV 382
           M+   + P N TF+ +         ++LG+QIH  + ++  + D+ L N LI+MY +CG 
Sbjct: 523 MQNEELEPDNITFASVLSGCKNPEALELGKQIHGRITESGLQLDVNLGNALINMYIRCGS 582

Query: 383 IDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTH-PNSVTFLGILS 441
           + +A N+F ++  RD++SW +M+ G +  G   + +++F  M   G   P+  TF  ILS
Sbjct: 583 LQDARNVFHSLQHRDVMSWTAMIGGCADQGEDMKAIELFWQMQNEGFRPPDGSTFTSILS 642

Query: 442 ACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDH 501
           AC+HAGLV  G+++F++M   Y + P  EHY  ++ LLGRA + +EAE  + ++PF PD 
Sbjct: 643 ACNHAGLVLEGYQIFSSMESEYGVLPTIEHYGCLVGLLGRARRFQEAETLINQMPFPPDA 702

Query: 502 RIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMD 561
            +W  LLGAC    GN  +AEHAA   L+L+  N   +++L N+YAA+GR  +  K+R  
Sbjct: 703 AVWETLLGACRI-HGNIALAEHAANNALKLNARNPAVYILLSNVYAAAGRWDDVAKIRRV 761

Query: 562 MGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
           M  +G+RK PG SW+  +  I  F++ D+   + AEI
Sbjct: 762 MEGRGIRKEPGRSWIEVDNIIHEFIAADRSHPETAEI 798



 Score =  188 bits (478), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 133/546 (24%), Positives = 254/546 (46%), Gaps = 56/546 (10%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPER----NV 73
           I  Y K   + +A  +F+ MP+R+V+S+N+++S + Q G   +A +LFEEM       N 
Sbjct: 69  INMYVKCRSVLDAHQVFKEMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAGFIPNK 128

Query: 74  VSWTAMICGLADAGRVCEARKLFEEM----PERNVVSWNSMVVGLIRNGELNEARKVFNS 129
           +++ +++        +   +K+  ++     +R+    NS++    + G+L  AR+VF  
Sbjct: 129 ITYISILTACYSPAELENGKKIHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVFAG 188

Query: 130 MPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNV----VTWTSMISGYC-------- 177
           +  ++V+S+N M+  Y +   + E + LF +M    +    VT+ +++  +         
Sbjct: 189 ISPRDVVSYNTMLGLYAQKAYVKECLGLFGQMSSEGISPDKVTYINLLDAFTTPSMLDEG 248

Query: 178 ---------------------------RAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWN 210
                                      R G+V+     F+ +  ++VV + A+I   A +
Sbjct: 249 KRIHKLTVEEGLNSDIRVGTALVTMCVRCGDVDSAKQAFKGIADRDVVVYNALIAALAQH 308

Query: 211 GFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEIS-- 268
           G + E+   +  M+    +G   N  +  S++N       LE  + +   +      S  
Sbjct: 309 GHNVEAFEQYYRMRS---DGVALNRTTYLSILNACSTSKALEAGKLIHSHISEDGHSSDV 365

Query: 269 --WTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAH 326
               ++I  Y   G +  A  LF+ MP RD ++W A+I+G  + E   EA  L+ +M++ 
Sbjct: 366 QIGNALISMYARCGDLPKARELFYTMPKRDLISWNAIIAGYARREDRGEAMRLYKQMQSE 425

Query: 327 GVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNA 386
           GV P   TF  L  A   ++    G+ IH  ++++  +S+  L N L++MY +CG +  A
Sbjct: 426 GVKPGRVTFLHLLSACANSSAYADGKMIHEDILRSGIKSNGHLANALMNMYRRCGSLMEA 485

Query: 387 YNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHA 446
            N+F    +RD++SWNSM+ G + HG      K+F+ M      P+++TF  +LS C + 
Sbjct: 486 QNVFEGTQARDVISWNSMIAGHAQHGSYETAYKLFQEMQNEELEPDNITFASVLSGCKNP 545

Query: 447 GLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGA 506
             +  G ++   + +   +Q       ++IN+  R G +++A      L    D   W A
Sbjct: 546 EALELGKQIHGRITES-GLQLDVNLGNALINMYIRCGSLQDARNVFHSLQHR-DVMSWTA 603

Query: 507 LLGACG 512
           ++G C 
Sbjct: 604 MIGGCA 609



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 89/355 (25%), Positives = 166/355 (46%), Gaps = 15/355 (4%)

Query: 172 MISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGN 231
           +I+ Y +   V + + +F+ MPR++V+SW ++I  +A  GF K++  LF EM+   + G 
Sbjct: 68  LINMYVKCRSVLDAHQVFKEMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQ---NAGF 124

Query: 232 NCNVQSCNSMINGYIRFGRLEEAQNLFDTV----PVRDEISWTSMIDGYLSVGQVSNAYY 287
             N  +  S++        LE  + +   +      RD     S++  Y   G +  A  
Sbjct: 125 IPNKITYISILTACYSPAELENGKKIHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQ 184

Query: 288 LFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATAN 347
           +F  +  RD V++  M+    Q     E   LF +M + G+ P   T+  L  A    + 
Sbjct: 185 VFAGISPRDVVSYNTMLGLYAQKAYVKECLGLFGQMSSEGISPDKVTYINLLDAFTTPSM 244

Query: 348 IDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMG 407
           +D G++IH + ++    SD+ +   L++M  +CG +D+A   F  +  RD+V +N+++  
Sbjct: 245 LDEGKRIHKLTVEEGLNSDIRVGTALVTMCVRCGDVDSAKQAFKGIADRDVVVYNALIAA 304

Query: 408 FSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFD---VYK 464
            + HG   E  + +  M   G   N  T+L IL+ACS +  +  G  + + + +      
Sbjct: 305 LAQHGHNVEAFEQYYRMRSDGVALNRTTYLSILNACSTSKALEAGKLIHSHISEDGHSSD 364

Query: 465 IQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAE 519
           +Q G     ++I++  R G + +A E    +P + D   W A++      E   E
Sbjct: 365 VQIGN----ALISMYARCGDLPKARELFYTMP-KRDLISWNAIIAGYARREDRGE 414



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 42/158 (26%), Positives = 81/158 (51%), Gaps = 1/158 (0%)

Query: 333 ATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSN 392
           AT+  L         +   ++IH  +++     D+ L N LI+MY KC  + +A+ +F  
Sbjct: 28  ATYVALLQNCTRKRLLPEAKRIHAQMVEAGVGPDIFLSNLLINMYVKCRSVLDAHQVFKE 87

Query: 393 MVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRG 452
           M  RD++SWNS++  ++  G   +  ++FE M  +G  PN +T++ IL+AC     +  G
Sbjct: 88  MPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAGFIPNKITYISILTACYSPAELENG 147

Query: 453 WELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEE 490
            ++ + +      Q  P    S++++ G+ G +  A +
Sbjct: 148 KKIHSQIIKA-GYQRDPRVQNSLLSMYGKCGDLPRARQ 184


>gi|225444744|ref|XP_002278128.1| PREDICTED: pentatricopeptide repeat-containing protein At1g11290
           [Vitis vinifera]
          Length = 597

 Score =  287 bits (734), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 174/510 (34%), Positives = 268/510 (52%), Gaps = 14/510 (2%)

Query: 92  ARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMM 151
           ARK+F++MP+R+V  WN+++ G    G   EA  ++++M    +   N      V  C +
Sbjct: 81  ARKMFDQMPKRDVFLWNTLIRGYADAGPCEEALALYSNMHGAGLFPDNYTFPFVVRSCAV 140

Query: 152 GEAIVLFEEME--------ERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAM 203
             A+   +E+         + +V   +S+++ Y ++GE      +F  M  +N+VSWTA+
Sbjct: 141 LSALREGKEVHCNIVKHGFDSDVFVQSSLVAMYSQSGETLGMELVFGEMVVRNIVSWTAV 200

Query: 204 IGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMING--YIRFGRLEEAQNLFDTV 261
           I G+  N + KE L +F EM G     N   + S      G  ++  G+L     +   +
Sbjct: 201 IAGYVQNRYFKEGLGVFREMVGSGTQPNAVTLVSVLPACAGLEFLNLGKLIHGYGI--KL 258

Query: 262 PVRDEISWT-SMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLF 320
            V  ++S T ++I  Y   G V  A  LF  M  ++ V+W AMI+   QN     A  LF
Sbjct: 259 GVDPDVSLTNALIALYGKCGNVETARSLFDGMVVQNLVSWNAMIAAYEQNNAGANAVKLF 318

Query: 321 MEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKC 380
             M+A  V     T   +  A  +   ++ GR +H ++ +   E ++ + N LI MYAKC
Sbjct: 319 RRMQAEKVDFDYITMVSVISACASLGALNTGRWMHELVKRKGLEINVSITNALIDMYAKC 378

Query: 381 GVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGIL 440
           G ID A  +F  +  R +VSW SM+   + HG   + LK+F  M + G  PNS TF  + 
Sbjct: 379 GNIDLAREVFERLPCRSVVSWTSMIGACASHGHGEDALKLFSRMKDEGVKPNSFTFAAVF 438

Query: 441 SACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPD 500
           +AC H+GLV  G + F +M   Y I PG EH   M++LLGRAG + EA EF+ ++P EPD
Sbjct: 439 TACRHSGLVEEGRKHFESMMRDYSIMPGVEHCACMVDLLGRAGSLMEAYEFIDKMPVEPD 498

Query: 501 HRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRM 560
             +WGALLG+C     N E+AE  A++L  LDP     +V++ NIYA +GR  +  +LR 
Sbjct: 499 VSVWGALLGSCRI-HSNLELAELVAEKLFLLDPQTVTFYVLMSNIYAEAGRWEDAARLRK 557

Query: 561 DMGLKGVRKVPGCSWLMRNGGIQMFLSGDK 590
            M  + ++K+PG S +  N     FLSG +
Sbjct: 558 LMEERELKKIPGHSLVEVNRRFHTFLSGSR 587



 Score =  142 bits (357), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 116/413 (28%), Positives = 194/413 (46%), Gaps = 26/413 (6%)

Query: 172 MISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGN 231
           +I+  C A  ++    +F +MP+++V  W  +I G+A  G  +E+L L+  M G     +
Sbjct: 68  IITACCLAPTMDYARKMFDQMPKRDVFLWNTLIRGYADAGPCEEALALYSNMHGAGLFPD 127

Query: 232 NCN----VQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYY 287
           N      V+SC  +    +R G+ E   N+       D    +S++  Y   G+      
Sbjct: 128 NYTFPFVVRSCAVL--SALREGK-EVHCNIVKHGFDSDVFVQSSLVAMYSQSGETLGMEL 184

Query: 288 LFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATAN 347
           +F  M  R+ V+WTA+I+G VQN  F E   +F EM   G  P   T   +  A      
Sbjct: 185 VFGEMVVRNIVSWTAVIAGYVQNRYFKEGLGVFREMVGSGTQPNAVTLVSVLPACAGLEF 244

Query: 348 IDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMG 407
           ++LG+ IH   +K   + D+ L N LI++Y KCG ++ A ++F  MV ++LVSWN+M+  
Sbjct: 245 LNLGKLIHGYGIKLGVDPDVSLTNALIALYGKCGNVETARSLFDGMVVQNLVSWNAMIAA 304

Query: 408 FSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRG-WELFNAMFDVYKIQ 466
           +  +      +K+F  M       + +T + ++SAC+  G ++ G W     M ++ K +
Sbjct: 305 YEQNNAGANAVKLFRRMQAEKVDFDYITMVSVISACASLGALNTGRW-----MHELVK-R 358

Query: 467 PGPEHYVS----MINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAE 522
            G E  VS    +I++  + G I  A E   RLP       W +++GAC    G+ E A 
Sbjct: 359 KGLEINVSITNALIDMYAKCGNIDLAREVFERLPCRSVVS-WTSMIGACA-SHGHGEDAL 416

Query: 523 HAAKRLLELDPLNAPAHVVLCNIYAASGRH---VEEHKLRMDMGLKGVRKVPG 572
               R+   D    P       ++ A  RH   VEE +   +  ++    +PG
Sbjct: 417 KLFSRM--KDEGVKPNSFTFAAVFTAC-RHSGLVEEGRKHFESMMRDYSIMPG 466



 Score =  115 bits (289), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 113/465 (24%), Positives = 188/465 (40%), Gaps = 89/465 (19%)

Query: 61  ARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMP-------------------- 100
           AR++F++MP+R+V  W  +I G ADAG   EA  L+  M                     
Sbjct: 81  ARKMFDQMPKRDVFLWNTLIRGYADAGPCEEALALYSNMHGAGLFPDNYTFPFVVRSCAV 140

Query: 101 -------------------ERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAM 141
                              + +V   +S+V    ++GE      VF  M ++N++SW A+
Sbjct: 141 LSALREGKEVHCNIVKHGFDSDVFVQSSLVAMYSQSGETLGMELVFGEMVVRNIVSWTAV 200

Query: 142 IAGYVECCMMGEAIVLFEEM----EERNVVTWTS-------------------------- 171
           IAGYV+     E + +F EM     + N VT  S                          
Sbjct: 201 IAGYVQNRYFKEGLGVFREMVGSGTQPNAVTLVSVLPACAGLEFLNLGKLIHGYGIKLGV 260

Query: 172 ---------MISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIE 222
                    +I+ Y + G VE    LF  M  +N+VSW AMI  +  N     ++ LF  
Sbjct: 261 DPDVSLTNALIALYGKCGNVETARSLFDGMVVQNLVSWNAMIAAYEQNNAGANAVKLFRR 320

Query: 223 MKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRD---EISWT-SMIDGYLS 278
           M+       + +  +  S+I+     G L   + + + V  +     +S T ++ID Y  
Sbjct: 321 MQA---EKVDFDYITMVSVISACASLGALNTGRWMHELVKRKGLEINVSITNALIDMYAK 377

Query: 279 VGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVL 338
            G +  A  +F  +P R  V+WT+MI     +    +A  LF  M+  GV P + TF+ +
Sbjct: 378 CGNIDLAREVFERLPCRSVVSWTSMIGACASHGHGEDALKLFSRMKDEGVKPNSFTFAAV 437

Query: 339 FGAAGATANIDLGRQIHCVLMKTESESDLILE-NCLISMYAKCGVIDNAYNIFSNM-VSR 396
           F A   +  ++ GR+    +M+  S    +    C++ +  + G +  AY     M V  
Sbjct: 438 FTACRHSGLVEEGRKHFESMMRDYSIMPGVEHCACMVDLLGRAGSLMEAYEFIDKMPVEP 497

Query: 397 DLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILS 441
           D+  W +++     H        V E +      P +VTF  ++S
Sbjct: 498 DVSVWGALLGSCRIHSNLELAELVAEKLFL--LDPQTVTFYVLMS 540



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 96/385 (24%), Positives = 165/385 (42%), Gaps = 74/385 (19%)

Query: 15  TSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEM----PE 70
           +S +  YS+ G     + +F  M  RN+VS+ A+++G++QN    E   +F EM     +
Sbjct: 167 SSLVAMYSQSGETLGMELVFGEMVVRNIVSWTAVIAGYVQNRYFKEGLGVFREMVGSGTQ 226

Query: 71  RNVVSWTAMICGLA-----DAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARK 125
            N V+  +++   A     + G++     + +   + +V   N+++    + G +  AR 
Sbjct: 227 PNAVTLVSVLPACAGLEFLNLGKLIHGYGI-KLGVDPDVSLTNALIALYGKCGNVETARS 285

Query: 126 VFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEME----------------------- 162
           +F+ M ++N++SWNAMIA Y +      A+ LF  M+                       
Sbjct: 286 LFDGMVVQNLVSWNAMIAAYEQNNAGANAVKLFRRMQAEKVDFDYITMVSVISACASLGA 345

Query: 163 ----------------ERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGG 206
                           E NV    ++I  Y + G ++    +F R+P ++VVSWT+MIG 
Sbjct: 346 LNTGRWMHELVKRKGLEINVSITNALIDMYAKCGNIDLAREVFERLPCRSVVSWTSMIGA 405

Query: 207 FAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDE 266
            A +G  +++L LF  MK   D G   N  +  ++       G +EE +  F+++ +RD 
Sbjct: 406 CASHGHGEDALKLFSRMK---DEGVKPNSFTFAAVFTACRHSGLVEEGRKHFESM-MRDY 461

Query: 267 I------SWTSMIDGYLSVGQVSNAYYLFHNMP-DRDAVAWTAMI------SGLVQNELF 313
                      M+D     G +  AY     MP + D   W A++      S L   EL 
Sbjct: 462 SIMPGVEHCACMVDLLGRAGSLMEAYEFIDKMPVEPDVSVWGALLGSCRIHSNLELAELV 521

Query: 314 VEATYLFMEMRAHGVPPLNATFSVL 338
            E  +L        + P   TF VL
Sbjct: 522 AEKLFL--------LDPQTVTFYVL 538



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 72/276 (26%), Positives = 126/276 (45%), Gaps = 47/276 (17%)

Query: 12  VHLTSS-ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPE 70
           V LT++ I  Y K G ++ A++LF  M  +N+VS+NAM++ + QN   + A +LF  M  
Sbjct: 264 VSLTNALIALYGKCGNVETARSLFDGMVVQNLVSWNAMIAAYEQNNAGANAVKLFRRMQA 323

Query: 71  RNV----VSWTAMICGLADAGRVCEARKLFEEMPER----NVVSWNSMVVGLIRNGELNE 122
             V    ++  ++I   A  G +   R + E +  +    NV   N+++    + G ++ 
Sbjct: 324 EKVDFDYITMVSVISACASLGALNTGRWMHELVKRKGLEINVSITNALIDMYAKCGNIDL 383

Query: 123 ARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEER----NVVTWTSMISGYCR 178
           AR+VF  +P ++V+SW +MI          +A+ LF  M++     N  T+ ++ +    
Sbjct: 384 AREVFERLPCRSVVSWTSMIGACASHGHGEDALKLFSRMKDEGVKPNSFTFAAVFTACRH 443

Query: 179 AGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSC 238
           +G VEEG   F  M R     ++ M G                             V+ C
Sbjct: 444 SGLVEEGRKHFESMMR----DYSIMPG-----------------------------VEHC 470

Query: 239 NSMINGYIRFGRLEEAQNLFDTVPVRDEIS-WTSMI 273
             M++   R G L EA    D +PV  ++S W +++
Sbjct: 471 ACMVDLLGRAGSLMEAYEFIDKMPVEPDVSVWGALL 506



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 52/203 (25%), Positives = 91/203 (44%), Gaps = 35/203 (17%)

Query: 12  VHLTSSITKYSKRGFIDEAKALFQLMPQR----NVVSYNAMLSGFLQNGRLSEARRLFEE 67
           + + S I+  +  G ++  + + +L+ ++    NV   NA++  + + G +  AR +FE 
Sbjct: 331 ITMVSVISACASLGALNTGRWMHELVKRKGLEINVSITNALIDMYAKCGNIDLAREVFER 390

Query: 68  MPERNVVSWTAMICGLADAGRVCEARKLFEEMPER----NVVSWNSMVVGLIRNGELNEA 123
           +P R+VVSWT+MI   A  G   +A KLF  M +     N  ++ ++      +G + E 
Sbjct: 391 LPCRSVVSWTSMIGACASHGHGEDALKLFSRMKDEGVKPNSFTFAAVFTACRHSGLVEEG 450

Query: 124 RKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVE 183
           RK F SM     +   +++ G   C                       M+    RAG + 
Sbjct: 451 RKHFESM-----MRDYSIMPGVEHC---------------------ACMVDLLGRAGSLM 484

Query: 184 EGYCLFRRMPRKNVVS-WTAMIG 205
           E Y    +MP +  VS W A++G
Sbjct: 485 EAYEFIDKMPVEPDVSVWGALLG 507



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 31/109 (28%), Positives = 57/109 (52%), Gaps = 4/109 (3%)

Query: 349 DLGRQIHCVLMKTESESDLILENCLISMYAKC--GVIDNAYNIFSNMVSRDLVSWNSMVM 406
           DL R IH +++      +L+L   LI + A C    +D A  +F  M  RD+  WN+++ 
Sbjct: 44  DLSR-IHALVVTNGCGQNLLLSTKLI-ITACCLAPTMDYARKMFDQMPKRDVFLWNTLIR 101

Query: 407 GFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWEL 455
           G++  G   E L ++ +M  +G  P++ TF  ++ +C+    +  G E+
Sbjct: 102 GYADAGPCEEALALYSNMHGAGLFPDNYTFPFVVRSCAVLSALREGKEV 150


>gi|6729044|gb|AAF27040.1|AC009177_30 hypothetical protein [Arabidopsis thaliana]
          Length = 770

 Score =  287 bits (734), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 171/538 (31%), Positives = 280/538 (52%), Gaps = 17/538 (3%)

Query: 73  VVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKV------ 126
           +V W +++   A  G++ +A KLF+EMP R+V+S N +  G +RN E      +      
Sbjct: 90  LVVWNSLLSLYAKCGKLVDAIKLFDEMPMRDVISQNIVFYGFLRNRETESGFVLLKRMLG 149

Query: 127 ---FNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEME--ERNVVTWTSMISGYCRAGE 181
              F+   +  V+S    +    E C++ + I     +   ++ +     +I+ Y + G 
Sbjct: 150 SGGFDHATLTIVLS----VCDTPEFCLVTKMIHALAILSGYDKEISVGNKLITSYFKCGC 205

Query: 182 VEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSM 241
              G  +F  M  +NV++ TA+I G   N  H++ L LF  M+    + N+    S  + 
Sbjct: 206 SVSGRGVFDGMSHRNVITLTAVISGLIENELHEDGLRLFSLMRRGLVHPNSVTYLSALAA 265

Query: 242 INGYIRFGRLEEAQNLFDTVPVRDEISWTS-MIDGYLSVGQVSNAYYLFHNMPDRDAVAW 300
            +G  R    ++   L     +  E+   S ++D Y   G + +A+ +F +  + D V+ 
Sbjct: 266 CSGSQRIVEGQQIHALLWKYGIESELCIESALMDMYSKCGSIEDAWTIFESTTEVDEVSM 325

Query: 301 TAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMK 360
           T ++ GL QN    EA   F+ M   GV       S + G +    ++ LG+Q+H +++K
Sbjct: 326 TVILVGLAQNGSEEEAIQFFIRMLQAGVEIDANVVSAVLGVSFIDNSLGLGKQLHSLVIK 385

Query: 361 TESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKV 420
            +   +  + N LI+MY+KCG + ++  +F  M  R+ VSWNSM+  F+ HG     LK+
Sbjct: 386 RKFSGNTFVNNGLINMYSKCGDLTDSQTVFRRMPKRNYVSWNSMIAAFARHGHGLAALKL 445

Query: 421 FESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLG 480
           +E M      P  VTFL +L ACSH GL+ +G EL N M +V+ I+P  EHY  +I++LG
Sbjct: 446 YEEMTTLEVKPTDVTFLSLLHACSHVGLIDKGRELLNEMKEVHGIEPRTEHYTCIIDMLG 505

Query: 481 RAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHV 540
           RAG +KEA+ F+  LP +PD +IW ALLGAC F  G+ E+ E+AA++L +  P ++ AH+
Sbjct: 506 RAGLLKEAKSFIDSLPLKPDCKIWQALLGACSF-HGDTEVGEYAAEQLFQTAPDSSSAHI 564

Query: 541 VLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
           ++ NIY++ G+  E  K    M   GV K  G S +        F+  DK+  Q   I
Sbjct: 565 LIANIYSSRGKWKERAKTIKRMKAMGVTKETGISSIEIEHKTHSFVVEDKLHPQAEAI 622



 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 104/414 (25%), Positives = 186/414 (44%), Gaps = 51/414 (12%)

Query: 160 EMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLL 219
           ++    +V W S++S Y + G++ +   LF  MP ++V+S   +  GF  N   +   +L
Sbjct: 84  DIHRNALVVWNSLLSLYAKCGKLVDAIKLFDEMPMRDVISQNIVFYGFLRNRETESGFVL 143

Query: 220 FIEMKG--------------ICDNGNNCNVQS---CNSMINGYIRFGRLEEAQNLFDTVP 262
              M G              +CD    C V       ++++GY +               
Sbjct: 144 LKRMLGSGGFDHATLTIVLSVCDTPEFCLVTKMIHALAILSGYDK--------------- 188

Query: 263 VRDEIS-WTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFM 321
              EIS    +I  Y   G   +   +F  M  R+ +  TA+ISGL++NEL  +   LF 
Sbjct: 189 ---EISVGNKLITSYFKCGCSVSGRGVFDGMSHRNVITLTAVISGLIENELHEDGLRLFS 245

Query: 322 EMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCG 381
            MR   V P + T+     A   +  I  G+QIH +L K   ES+L +E+ L+ MY+KCG
Sbjct: 246 LMRRGLVHPNSVTYLSALAACSGSQRIVEGQQIHALLWKYGIESELCIESALMDMYSKCG 305

Query: 382 VIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILS 441
            I++A+ IF +    D VS   +++G + +G   E ++ F  ML++G   ++     +L 
Sbjct: 306 SIEDAWTIFESTTEVDEVSMTVILVGLAQNGSEEEAIQFFIRMLQAGVEIDANVVSAVLG 365

Query: 442 ACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVS--MINLLGRAGKIKEAEEFVLRLPFEP 499
                  +  G +L +    V K +     +V+  +IN+  + G + +++    R+P + 
Sbjct: 366 VSFIDNSLGLGKQLHSL---VIKRKFSGNTFVNNGLINMYSKCGDLTDSQTVFRRMP-KR 421

Query: 500 DHRIWGALLGACG-FCEGNAEIAEHAAKRLLELDP--------LNAPAHVVLCN 544
           ++  W +++ A      G A +  +     LE+ P        L+A +HV L +
Sbjct: 422 NYVSWNSMIAAFARHGHGLAALKLYEEMTTLEVKPTDVTFLSLLHACSHVGLID 475



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 105/468 (22%), Positives = 194/468 (41%), Gaps = 74/468 (15%)

Query: 6   HPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLF 65
           H  +LVV   S ++ Y+K G + +A  LF  MP R+V+S N +  GFL+N        L 
Sbjct: 86  HRNALVV-WNSLLSLYAKCGKLVDAIKLFDEMPMRDVISQNIVFYGFLRNRETESGFVLL 144

Query: 66  EEMPERNVVSWTAM--ICGLADAGRVCEARKLFEEMP-----ERNVVSWNSMVVGLIRNG 118
           + M          +  +  + D    C   K+   +      ++ +   N ++    + G
Sbjct: 145 KRMLGSGGFDHATLTIVLSVCDTPEFCLVTKMIHALAILSGYDKEISVGNKLITSYFKCG 204

Query: 119 ELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEME----ERNVVTWTSMIS 174
                R VF+ M  +NVI+  A+I+G +E  +  + + LF  M       N VT+ S ++
Sbjct: 205 CSVSGRGVFDGMSHRNVITLTAVISGLIENELHEDGLRLFSLMRRGLVHPNSVTYLSALA 264

Query: 175 G-----------------------------------YCRAGEVEEGYCLFRRMPRKNVVS 199
                                               Y + G +E+ + +F      + VS
Sbjct: 265 ACSGSQRIVEGQQIHALLWKYGIESELCIESALMDMYSKCGSIEDAWTIFESTTEVDEVS 324

Query: 200 WTAMIGGFAWNGFHKESLLLFIEM--KGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNL 257
            T ++ G A NG  +E++  FI M   G+  + N  +     S I+  +  G+       
Sbjct: 325 MTVILVGLAQNGSEEEAIQFFIRMLQAGVEIDANVVSAVLGVSFIDNSLGLGK------Q 378

Query: 258 FDTVPVRDEISWTS-----MIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNEL 312
             ++ ++ + S  +     +I+ Y   G ++++  +F  MP R+ V+W +MI+   ++  
Sbjct: 379 LHSLVIKRKFSGNTFVNNGLINMYSKCGDLTDSQTVFRRMPKRNYVSWNSMIAAFARHGH 438

Query: 313 FVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGR-------QIHCVLMKTESES 365
            + A  L+ EM    V P + TF  L  A      ID GR       ++H +  +TE  +
Sbjct: 439 GLAALKLYEEMTTLEVKPTDVTFLSLLHACSHVGLIDKGRELLNEMKEVHGIEPRTEHYT 498

Query: 366 DLILENCLISMYAKCGVIDNAYNIFSNM-VSRDLVSWNSMVMGFSHHG 412
                 C+I M  + G++  A +   ++ +  D   W +++   S HG
Sbjct: 499 ------CIIDMLGRAGLLKEAKSFIDSLPLKPDCKIWQALLGACSFHG 540



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 73/295 (24%), Positives = 125/295 (42%), Gaps = 52/295 (17%)

Query: 21  YSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNV---VSWT 77
           YSK G I++A  +F+   + + VS   +L G  QNG   EA + F  M +  V    +  
Sbjct: 301 YSKCGSIEDAWTIFESTTEVDEVSMTVILVGLAQNGSEEEAIQFFIRMLQAGVEIDANVV 360

Query: 78  AMICGLADAGRVCEARKLFEEMPERNVVSWNSMV-VGLI----RNGELNEARKVFNSMPI 132
           + + G++         K    +  +   S N+ V  GLI    + G+L +++ VF  MP 
Sbjct: 361 SAVLGVSFIDNSLGLGKQLHSLVIKRKFSGNTFVNNGLINMYSKCGDLTDSQTVFRRMPK 420

Query: 133 KNVISWNAMIAGYVECCMMGEAIVLFEEMEERNV----VTWTSMISGYCRAGEVEEGYCL 188
           +N +SWN+MIA +        A+ L+EEM    V    VT+ S++      G +++G  L
Sbjct: 421 RNYVSWNSMIAAFARHGHGLAALKLYEEMTTLEVKPTDVTFLSLLHACSHVGLIDKGREL 480

Query: 189 FRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRF 248
              M                             E+ GI         +    +I+   R 
Sbjct: 481 LNEMK----------------------------EVHGI-----EPRTEHYTCIIDMLGRA 507

Query: 249 GRLEEAQNLFDTVPVRDEIS-WTSMI-----DGYLSVGQVSNAYYLFHNMPDRDA 297
           G L+EA++  D++P++ +   W +++      G   VG+ + A  LF   PD  +
Sbjct: 508 GLLKEAKSFIDSLPLKPDCKIWQALLGACSFHGDTEVGEYA-AEQLFQTAPDSSS 561



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/149 (28%), Positives = 80/149 (53%), Gaps = 13/149 (8%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNV---- 73
           I  YSK G + +++ +F+ MP+RN VS+N+M++ F ++G    A +L+EEM    V    
Sbjct: 399 INMYSKCGDLTDSQTVFRRMPKRNYVSWNSMIAAFARHGHGLAALKLYEEMTTLEVKPTD 458

Query: 74  VSWTAMICGLADAGRVCEARKLFEEMPERNVVS-----WNSMVVGLIRNGELNEARKVFN 128
           V++ +++   +  G + + R+L  EM E + +      +  ++  L R G L EA+   +
Sbjct: 459 VTFLSLLHACSHVGLIDKGRELLNEMKEVHGIEPRTEHYTCIIDMLGRAGLLKEAKSFID 518

Query: 129 SMPIK-NVISWNAMIAGYVECCMMGEAIV 156
           S+P+K +   W A++     C   G+  V
Sbjct: 519 SLPLKPDCKIWQALLGA---CSFHGDTEV 544


>gi|22293716|dbj|BAC10060.1| selenium-binding protein-like protein [Oryza sativa Japonica Group]
          Length = 631

 Score =  286 bits (733), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 159/477 (33%), Positives = 246/477 (51%), Gaps = 40/477 (8%)

Query: 123 ARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEV 182
           AR+VF+ M  ++V+SWN+++  Y+       A+  FE M ERNVV+W ++++G+ R G++
Sbjct: 170 ARQVFDEMVDRDVVSWNSIVGVYMSSGDATGAMGFFEAMPERNVVSWNTVVAGFARMGDM 229

Query: 183 EEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMI 242
                +F RMP +N VSW                                      N MI
Sbjct: 230 VTARAVFDRMPSRNAVSW--------------------------------------NLMI 251

Query: 243 NGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTA 302
           +GY   G +E A+++FD +  +D +SWT+M+  Y  +G +     LF +MP ++ V+W A
Sbjct: 252 SGYAMSGDVEAARSVFDRMDQKDVVSWTAMVSAYAKIGDLDTVNELFDHMPVKNLVSWNA 311

Query: 303 MISGLVQNELFVEATYLFMEMRAHG-VPPLNATFSVLFGAAGATANIDLGRQIHCVLMKT 361
           MI+G   N  + EA   F  M   G   P  AT   +  A     +++    I   + K+
Sbjct: 312 MITGYNHNSRYDEALRTFQLMMLEGRFRPDEATLVSVVSACAQLGSVEYCNWISSFIGKS 371

Query: 362 ESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVF 421
                + L N LI M+AKCG +  A +IF  M +R +++W +M+ GF+ +GL  + L V+
Sbjct: 372 NIHLTVALGNALIDMFAKCGDVGRAESIFYKMETRCIITWTTMISGFAFNGLCRDALLVY 431

Query: 422 ESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGR 481
            +M   G   +   F+  L+AC+H GL+  GW +FN M + Y IQP  EHY  M++LLGR
Sbjct: 432 NNMCREGVQLDDTVFIAALAACAHGGLLQEGWSIFNEMVERYNIQPRMEHYGCMVDLLGR 491

Query: 482 AGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVV 541
           AG ++EA  F+  +P EP   IW  LL +C    GNAE+ E+ +K++ EL+P N+   V+
Sbjct: 492 AGNLQEAILFIESMPLEPSVVIWVTLLCSC-VAHGNAELIEYVSKKITELEPFNSSYQVL 550

Query: 542 LCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
           + N  A  GR       R  M   G+ KVPG S +     +  FL+ D    +  EI
Sbjct: 551 VSNCSALEGRWDGVIDARTSMRNWGIEKVPGSSSIQVGSEVHEFLAKDTRHKRRKEI 607



 Score =  173 bits (438), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 116/391 (29%), Positives = 197/391 (50%), Gaps = 12/391 (3%)

Query: 61  ARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGEL 120
           AR++F+EM +R+VVSW +++     +G    A   FE MPERNVVSWN++V G  R G++
Sbjct: 170 ARQVFDEMVDRDVVSWNSIVGVYMSSGDATGAMGFFEAMPERNVVSWNTVVAGFARMGDM 229

Query: 121 NEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAG 180
             AR VF+ MP +N +SWN MI+GY     +  A  +F+ M++++VV+WT+M+S Y + G
Sbjct: 230 VTARAVFDRMPSRNAVSWNLMISGYAMSGDVEAARSVFDRMDQKDVVSWTAMVSAYAKIG 289

Query: 181 EVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNS 240
           +++    LF  MP KN+VSW AMI G+  N  + E+L  F  M  + +     +  +  S
Sbjct: 290 DLDTVNELFDHMPVKNLVSWNAMITGYNHNSRYDEALRTFQLM--MLEGRFRPDEATLVS 347

Query: 241 MINGYIRFGRLEEAQNLFDTVPVRDEISWT-----SMIDGYLSVGQVSNAYYLFHNMPDR 295
           +++   + G +E   N   +   +  I  T     ++ID +   G V  A  +F+ M  R
Sbjct: 348 VVSACAQLGSVEYC-NWISSFIGKSNIHLTVALGNALIDMFAKCGDVGRAESIFYKMETR 406

Query: 296 DAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIH 355
             + WT MISG   N L  +A  ++  M   GV   +  F     A      +  G  I 
Sbjct: 407 CIITWTTMISGFAFNGLCRDALLVYNNMCREGVQLDDTVFIAALAACAHGGLLQEGWSIF 466

Query: 356 CVLMKTES-ESDLILENCLISMYAKCGVIDNAYNIFSNM-VSRDLVSWNSMVMGFSHHGL 413
             +++  + +  +    C++ +  + G +  A     +M +   +V W +++     HG 
Sbjct: 467 NEMVERYNIQPRMEHYGCMVDLLGRAGNLQEAILFIESMPLEPSVVIWVTLLCSCVAHG- 525

Query: 414 ANETLKVFESMLESGTHPNSVTFLGILSACS 444
            N  L  + S   +   P + ++  ++S CS
Sbjct: 526 -NAELIEYVSKKITELEPFNSSYQVLVSNCS 555



 Score =  159 bits (403), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 108/382 (28%), Positives = 179/382 (46%), Gaps = 55/382 (14%)

Query: 11  VVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPE 70
           VV   S +  Y   G    A   F+ MP+RNVVS+N +++GF + G +  AR +F+ MP 
Sbjct: 182 VVSWNSIVGVYMSSGDATGAMGFFEAMPERNVVSWNTVVAGFARMGDMVTARAVFDRMPS 241

Query: 71  RNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSM 130
           RN VSW  MI G A +G V  AR +F+ M +++VVSW +MV    + G+L+   ++F+ M
Sbjct: 242 RNAVSWNLMISGYAMSGDVEAARSVFDRMDQKDVVSWTAMVSAYAKIGDLDTVNELFDHM 301

Query: 131 PIKNVISWNAMIAGYVECCMMGEAIVLFEEM--------EERNVVT-------------- 168
           P+KN++SWNAMI GY       EA+  F+ M        +E  +V+              
Sbjct: 302 PVKNLVSWNAMITGYNHNSRYDEALRTFQLMMLEGRFRPDEATLVSVVSACAQLGSVEYC 361

Query: 169 -WTS-----------------MISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWN 210
            W S                 +I  + + G+V     +F +M  + +++WT MI GFA+N
Sbjct: 362 NWISSFIGKSNIHLTVALGNALIDMFAKCGDVGRAESIFYKMETRCIITWTTMISGFAFN 421

Query: 211 GFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEIS-- 268
           G  +++LL++  M   C  G   +     + +      G L+E  ++F+ +  R  I   
Sbjct: 422 GLCRDALLVYNNM---CREGVQLDDTVFIAALAACAHGGLLQEGWSIFNEMVERYNIQPR 478

Query: 269 ---WTSMIDGYLSVGQVSNAYYLFHNMP-DRDAVAWTAMISGLVQ--NELFVEATYLFME 322
              +  M+D     G +  A     +MP +   V W  ++   V   N   +E    ++ 
Sbjct: 479 MEHYGCMVDLLGRAGNLQEAILFIESMPLEPSVVIWVTLLCSCVAHGNAELIE----YVS 534

Query: 323 MRAHGVPPLNATFSVLFGAAGA 344
            +   + P N+++ VL     A
Sbjct: 535 KKITELEPFNSSYQVLVSNCSA 556



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 99/335 (29%), Positives = 166/335 (49%), Gaps = 25/335 (7%)

Query: 30  AKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRV 89
           A+ +F  M  R+VVS+N+++  ++ +G  + A   FE MPERNVVSW  ++ G A  G +
Sbjct: 170 ARQVFDEMVDRDVVSWNSIVGVYMSSGDATGAMGFFEAMPERNVVSWNTVVAGFARMGDM 229

Query: 90  CEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECC 149
             AR +F+ MP RN VSWN M+ G   +G++  AR VF+ M  K+V+SW AM++ Y +  
Sbjct: 230 VTARAVFDRMPSRNAVSWNLMISGYAMSGDVEAARSVFDRMDQKDVVSWTAMVSAYAKIG 289

Query: 150 MMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRM-------PRK----NVV 198
            +     LF+ M  +N+V+W +MI+GY      +E    F+ M       P +    +VV
Sbjct: 290 DLDTVNELFDHMPVKNLVSWNAMITGYNHNSRYDEALRTFQLMMLEGRFRPDEATLVSVV 349

Query: 199 SWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLF 258
           S  A +G   +  +       FI    I     +  V   N++I+ + + G +  A+++F
Sbjct: 350 SACAQLGSVEYCNWISS----FIGKSNI-----HLTVALGNALIDMFAKCGDVGRAESIF 400

Query: 259 DTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNM----PDRDAVAWTAMISGLVQNELFV 314
             +  R  I+WT+MI G+   G   +A  +++NM       D   + A ++      L  
Sbjct: 401 YKMETRCIITWTTMISGFAFNGLCRDALLVYNNMCREGVQLDDTVFIAALAACAHGGLLQ 460

Query: 315 EATYLFMEM-RAHGVPPLNATFSVLFGAAGATANI 348
           E   +F EM   + + P    +  +    G   N+
Sbjct: 461 EGWSIFNEMVERYNIQPRMEHYGCMVDLLGRAGNL 495



 Score =  128 bits (322), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 90/318 (28%), Positives = 152/318 (47%), Gaps = 52/318 (16%)

Query: 1   MSERNHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSE 60
           M ERN     VV   + +  +++ G +  A+A+F  MP RN VS+N M+SG+  +G +  
Sbjct: 208 MPERN-----VVSWNTVVAGFARMGDMVTARAVFDRMPSRNAVSWNLMISGYAMSGDVEA 262

Query: 61  ARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGEL 120
           AR +F+ M +++VVSWTAM+   A  G +    +LF+ MP +N+VSWN+M+ G   N   
Sbjct: 263 ARSVFDRMDQKDVVSWTAMVSAYAKIGDLDTVNELFDHMPVKNLVSWNAMITGYNHNSRY 322

Query: 121 NEARKVFNSMPIK-----------NVIS------------W-----------------NA 140
           +EA + F  M ++           +V+S            W                 NA
Sbjct: 323 DEALRTFQLMMLEGRFRPDEATLVSVVSACAQLGSVEYCNWISSFIGKSNIHLTVALGNA 382

Query: 141 MIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNV--- 197
           +I  + +C  +G A  +F +ME R ++TWT+MISG+   G   +   ++  M R+ V   
Sbjct: 383 LIDMFAKCGDVGRAESIFYKMETRCIITWTTMISGFAFNGLCRDALLVYNNMCREGVQLD 442

Query: 198 -VSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQN 256
              + A +   A  G  +E   +F EM    +         C  M++   R G L+EA  
Sbjct: 443 DTVFIAALAACAHGGLLQEGWSIFNEMVERYNIQPRMEHYGC--MVDLLGRAGNLQEAIL 500

Query: 257 LFDTVPVRDEIS-WTSMI 273
             +++P+   +  W +++
Sbjct: 501 FIESMPLEPSVVIWVTLL 518



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 52/193 (26%), Positives = 88/193 (45%), Gaps = 21/193 (10%)

Query: 326 HGVPPLNATFSVLFGAAGATANIDLGRQIHCV---LMKTESESDLILENCLISMYAKCGV 382
            GVPP   TF+ L  A    A + L R   CV   +++    SD+ ++N L+ +Y +CG 
Sbjct: 105 QGVPPNGFTFTFLLRAC---ALLGLPRPCGCVHGQIVRCGFGSDVFVQNALMDVYHRCGG 161

Query: 383 IDN-----AYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFL 437
                   A  +F  MV RD+VSWNS+V  +   G A   +  FE+M E     N V++ 
Sbjct: 162 GGGGGVGAARQVFDEMVDRDVVSWNSIVGVYMSSGDATGAMGFFEAMPER----NVVSWN 217

Query: 438 GILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPF 497
            +++  +  G +     +F+ M     +      +  MI+    +G ++ A     R+  
Sbjct: 218 TVVAGFARMGDMVTARAVFDRMPSRNAVS-----WNLMISGYAMSGDVEAARSVFDRMD- 271

Query: 498 EPDHRIWGALLGA 510
           + D   W A++ A
Sbjct: 272 QKDVVSWTAMVSA 284


>gi|356505262|ref|XP_003521411.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g37570-like [Glycine max]
          Length = 566

 Score =  286 bits (733), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 171/493 (34%), Positives = 266/493 (53%), Gaps = 19/493 (3%)

Query: 92  ARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMP----IKNVISWNAMIAGYVE 147
           A  +F  +   + V WN+++    +    +     F  M     + +  ++ ++I     
Sbjct: 81  ASSVFHRVLAPSTVLWNTLIKSHCQKNLFSHTLSAFARMKAHGALPDSFTYPSVIKACSG 140

Query: 148 CCMMGEAIVL----FEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAM 203
            C   E   L    F    ++++   TS+I  Y + GE+ +   +F  M  +NVVSWTAM
Sbjct: 141 TCKAREGKSLHGSAFRCGVDQDLYVGTSLIDMYGKCGEIADARKVFDGMSDRNVVSWTAM 200

Query: 204 IGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPV 263
           + G+   G   E+  LF EM        + NV S NSM+ G+++ G L  A+ +FD +P 
Sbjct: 201 LVGYVAVGDVVEARKLFDEMP-------HRNVASWNSMLQGFVKMGDLSGARGVFDAMPE 253

Query: 264 RDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEM 323
           ++ +S+T+MIDGY   G ++ A +LF    ++D VAW+A+ISG VQN L  +A  +F+EM
Sbjct: 254 KNVVSFTTMIDGYAKAGDMAAARFLFDCSLEKDVVAWSALISGYVQNGLPNQALRVFLEM 313

Query: 324 RAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKT--ESESDLILENCLISMYAKCG 381
               V P       L  A+    +++L + +   + K   + + D ++   L+ M AKCG
Sbjct: 314 ELMNVKPDEFILVSLMSASAQLGHLELAQWVDSYVSKICIDLQQDHVIA-ALLDMNAKCG 372

Query: 382 VIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILS 441
            ++ A  +F     RD+V + SM+ G S HG   E + +F  ML  G  P+ V F  IL+
Sbjct: 373 NMERALKLFDEKPRRDVVLYCSMIQGLSIHGRGEEAVNLFNRMLMEGLTPDEVAFTVILT 432

Query: 442 ACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDH 501
           ACS AGLV  G   F +M   Y I P P+HY  M++LL R+G I++A E +  +P+EP  
Sbjct: 433 ACSRAGLVDEGRNYFQSMKQKYCISPLPDHYACMVDLLSRSGHIRDAYELIKLIPWEPHA 492

Query: 502 RIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMD 561
             WGALLGAC    G++E+ E  A RL EL+PLNA  +V+L +IYAA+ R ++   +R  
Sbjct: 493 GAWGALLGACKL-YGDSELGEIVANRLFELEPLNAANYVLLSDIYAAAERWIDVSLVRSK 551

Query: 562 MGLKGVRKVPGCS 574
           M  + VRK+PG S
Sbjct: 552 MRERRVRKIPGSS 564



 Score =  168 bits (426), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 104/331 (31%), Positives = 177/331 (53%), Gaps = 17/331 (5%)

Query: 70  ERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNS 129
           ++++   T++I      G + +ARK+F+ M +RNVVSW +M+VG +  G++ EARK+F+ 
Sbjct: 160 DQDLYVGTSLIDMYGKCGEIADARKVFDGMSDRNVVSWTAMLVGYVAVGDVVEARKLFDE 219

Query: 130 MPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLF 189
           MP +NV SWN+M+ G+V+   +  A  +F+ M E+NVV++T+MI GY +AG++     LF
Sbjct: 220 MPHRNVASWNSMLQGFVKMGDLSGARGVFDAMPEKNVVSFTTMIDGYAKAGDMAAARFLF 279

Query: 190 RRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCN----SMINGY 245
                K+VV+W+A+I G+  NG   ++L +F+EM+ +       NV+       S+++  
Sbjct: 280 DCSLEKDVVAWSALISGYVQNGLPNQALRVFLEMELM-------NVKPDEFILVSLMSAS 332

Query: 246 IRFGRLEEAQNLFDTVP-----VRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAW 300
            + G LE AQ +   V      ++ +    +++D     G +  A  LF   P RD V +
Sbjct: 333 AQLGHLELAQWVDSYVSKICIDLQQDHVIAALLDMNAKCGNMERALKLFDEKPRRDVVLY 392

Query: 301 TAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMK 360
            +MI GL  +    EA  LF  M   G+ P    F+V+  A      +D GR     + +
Sbjct: 393 CSMIQGLSIHGRGEEAVNLFNRMLMEGLTPDEVAFTVILTACSRAGLVDEGRNYFQSMKQ 452

Query: 361 TESESDLILE-NCLISMYAKCGVIDNAYNIF 390
               S L     C++ + ++ G I +AY + 
Sbjct: 453 KYCISPLPDHYACMVDLLSRSGHIRDAYELI 483



 Score =  162 bits (411), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 102/312 (32%), Positives = 168/312 (53%), Gaps = 11/312 (3%)

Query: 46  NAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVV 105
            +++  + + G +++AR++F+ M +RNVVSWTAM+ G    G V EARKLF+EMP RNV 
Sbjct: 167 TSLIDMYGKCGEIADARKVFDGMSDRNVVSWTAMLVGYVAVGDVVEARKLFDEMPHRNVA 226

Query: 106 SWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERN 165
           SWNSM+ G ++ G+L+ AR VF++MP KNV+S+  MI GY +   M  A  LF+   E++
Sbjct: 227 SWNSMLQGFVKMGDLSGARGVFDAMPEKNVVSFTTMIDGYAKAGDMAAARFLFDCSLEKD 286

Query: 166 VVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVS----WTAMIGGFAWNGFHKESLLLFI 221
           VV W+++ISGY + G   +   +F  M   NV        +++   A  G  + +  +  
Sbjct: 287 VVAWSALISGYVQNGLPNQALRVFLEMELMNVKPDEFILVSLMSASAQLGHLELAQWVDS 346

Query: 222 EMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQ 281
            +  IC +    +V +  ++++   + G +E A  LFD  P RD + + SMI G    G+
Sbjct: 347 YVSKICIDLQQDHVIA--ALLDMNAKCGNMERALKLFDEKPRRDVVLYCSMIQGLSIHGR 404

Query: 282 VSNAYYLFHNM----PDRDAVAWTAMISGLVQNELFVEATYLFMEMR-AHGVPPLNATFS 336
              A  LF+ M       D VA+T +++   +  L  E    F  M+  + + PL   ++
Sbjct: 405 GEEAVNLFNRMLMEGLTPDEVAFTVILTACSRAGLVDEGRNYFQSMKQKYCISPLPDHYA 464

Query: 337 VLFGAAGATANI 348
            +      + +I
Sbjct: 465 CMVDLLSRSGHI 476



 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 119/391 (30%), Positives = 187/391 (47%), Gaps = 77/391 (19%)

Query: 15  TSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVV 74
           TS I  Y K G I +A+ +F  M  RNVVS+ AML G++  G + EAR+LF+EMP RNV 
Sbjct: 167 TSLIDMYGKCGEIADARKVFDGMSDRNVVSWTAMLVGYVAVGDVVEARKLFDEMPHRNVA 226

Query: 75  SWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKN 134
           SW +M+ G    G +  AR +F+ MPE+NVVS+ +M+ G  + G++  AR +F+    K+
Sbjct: 227 SWNSMLQGFVKMGDLSGARGVFDAMPEKNVVSFTTMIDGYAKAGDMAAARFLFDCSLEKD 286

Query: 135 VISWNAMIAGYVECCMMGEAIVLFEEMEERNV----------------------VTWT-S 171
           V++W+A+I+GYV+  +  +A+ +F EME  NV                        W  S
Sbjct: 287 VVAWSALISGYVQNGLPNQALRVFLEMELMNVKPDEFILVSLMSASAQLGHLELAQWVDS 346

Query: 172 MISGYC-----------------RAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHK 214
            +S  C                 + G +E    LF   PR++VV + +MI G + +G  +
Sbjct: 347 YVSKICIDLQQDHVIAALLDMNAKCGNMERALKLFDEKPRRDVVLYCSMIQGLSIHGRGE 406

Query: 215 ESLLLF--IEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEIS---- 268
           E++ LF  + M+G+  +     V     ++    R G ++E +N F ++  +  IS    
Sbjct: 407 EAVNLFNRMLMEGLTPDEVAFTV-----ILTACSRAGLVDEGRNYFQSMKQKYCISPLPD 461

Query: 269 -WTSMIDGYLSVGQVSNAYYLFHNMP-DRDAVAWTAMISG-----------LVQNELFVE 315
            +  M+D     G + +AY L   +P +  A AW A++             +V N LF  
Sbjct: 462 HYACMVDLLSRSGHIRDAYELIKLIPWEPHAGAWGALLGACKLYGDSELGEIVANRLF-- 519

Query: 316 ATYLFMEMRAHGVPPLNATFSVLFGAAGATA 346
                       + PLNA   VL     A A
Sbjct: 520 -----------ELEPLNAANYVLLSDIYAAA 539



 Score =  102 bits (253), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 75/279 (26%), Positives = 127/279 (45%), Gaps = 17/279 (6%)

Query: 279 VGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVL 338
           +  +S A  +FH +     V W  +I    Q  LF      F  M+AHG  P + T+  +
Sbjct: 75  LSTLSYASSVFHRVLAPSTVLWNTLIKSHCQKNLFSHTLSAFARMKAHGALPDSFTYPSV 134

Query: 339 FGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDL 398
             A   T     G+ +H    +   + DL +   LI MY KCG I +A  +F  M  R++
Sbjct: 135 IKACSGTCKAREGKSLHGSAFRCGVDQDLYVGTSLIDMYGKCGEIADARKVFDGMSDRNV 194

Query: 399 VSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNA 458
           VSW +M++G+   G   E  K+F+ M     H N  ++  +L      G +S    +F+A
Sbjct: 195 VSWTAMLVGYVAVGDVVEARKLFDEM----PHRNVASWNSMLQGFVKMGDLSGARGVFDA 250

Query: 459 MFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNA 518
           M +   +      + +MI+   +AG +  A  F+     E D   W AL+   G+ +   
Sbjct: 251 MPEKNVVS-----FTTMIDGYAKAGDMA-AARFLFDCSLEKDVVAWSALIS--GYVQNG- 301

Query: 519 EIAEHAAKRLLELDPLNA-PAHVVLCNIYAASGR--HVE 554
            +   A +  LE++ +N  P   +L ++ +AS +  H+E
Sbjct: 302 -LPNQALRVFLEMELMNVKPDEFILVSLMSASAQLGHLE 339



 Score = 89.0 bits (219), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 75/362 (20%), Positives = 142/362 (39%), Gaps = 79/362 (21%)

Query: 124 RKVFNSMPIKNVISWNAMIAGYVECCMMGE------AIVLFEEMEERNVVTWTSMISGYC 177
           R + +S P +  +   A I   ++ C   E      A ++   +E+ + + +  +   + 
Sbjct: 16  RSISHSSPFR--LHSAASITTLLKACKKREHLEQVHACIIHRGLEQDHFLVFLFISRAHT 73

Query: 178 RAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMK------------- 224
               +     +F R+   + V W  +I           +L  F  MK             
Sbjct: 74  LLSTLSYASSVFHRVLAPSTVLWNTLIKSHCQKNLFSHTLSAFARMKAHGALPDSFTYPS 133

Query: 225 ------GICDN-------------GNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRD 265
                 G C               G + ++    S+I+ Y + G + +A+ +FD +  R+
Sbjct: 134 VIKACSGTCKAREGKSLHGSAFRCGVDQDLYVGTSLIDMYGKCGEIADARKVFDGMSDRN 193

Query: 266 EISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRA 325
            +SWT+M+ GY++VG V  A  LF  MP R+  +W +M+ G V+                
Sbjct: 194 VVSWTAMLVGYVAVGDVVEARKLFDEMPHRNVASWNSMLQGFVK---------------- 237

Query: 326 HGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDN 385
                       L GA G              +     E +++    +I  YAK G +  
Sbjct: 238 ---------MGDLSGARG--------------VFDAMPEKNVVSFTTMIDGYAKAGDMAA 274

Query: 386 AYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSH 445
           A  +F   + +D+V+W++++ G+  +GL N+ L+VF  M      P+    + ++SA + 
Sbjct: 275 ARFLFDCSLEKDVVAWSALISGYVQNGLPNQALRVFLEMELMNVKPDEFILVSLMSASAQ 334

Query: 446 AG 447
            G
Sbjct: 335 LG 336



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 35/141 (24%), Positives = 63/141 (44%), Gaps = 6/141 (4%)

Query: 353 QIHCVLMKTESESDLILENCLIS-MYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHH 411
           Q+H  ++    E D  L    IS  +     +  A ++F  +++   V WN+++      
Sbjct: 47  QVHACIIHRGLEQDHFLVFLFISRAHTLLSTLSYASSVFHRVLAPSTVLWNTLIKSHCQK 106

Query: 412 GLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEH 471
            L + TL  F  M   G  P+S T+  ++ ACS       G  L  + F   +     + 
Sbjct: 107 NLFSHTLSAFARMKAHGALPDSFTYPSVIKACSGTCKAREGKSLHGSAF---RCGVDQDL 163

Query: 472 YV--SMINLLGRAGKIKEAEE 490
           YV  S+I++ G+ G+I +A +
Sbjct: 164 YVGTSLIDMYGKCGEIADARK 184


>gi|345505218|gb|AEN99833.1| chlororespiratory reduction 4 [Crucihimalaya wallichii]
          Length = 617

 Score =  286 bits (733), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 159/454 (35%), Positives = 251/454 (55%), Gaps = 16/454 (3%)

Query: 139 NAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPR--KN 196
           N +I  Y++C  +G A  +F+ M +R+ V++ SMI GY + G  E    LF  MP   KN
Sbjct: 164 NCLIGLYLKCGWLGFARQIFDRMPQRDSVSYNSMIDGYVKCGSTESARELFDLMPEEMKN 223

Query: 197 VVSWTAMIGGFAW--NGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEA 254
           ++SW +MI G+A   +G    S L F EM        + ++ S NSMI+GY++ GR+E+A
Sbjct: 224 LISWNSMISGYAQTSDGVDIASKL-FSEMP-------DKDLISWNSMIDGYVKHGRIEDA 275

Query: 255 QNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFV 314
           + LFD +P RD ++W++MIDGY  +G V  A  LF  MP RD V++ +MI+G VQN   +
Sbjct: 276 KYLFDVMPRRDVVTWSTMIDGYAKLGFVHQAKTLFDQMPHRDVVSYNSMIAGYVQNRYNM 335

Query: 315 EATYLF--MEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENC 372
           EA  +F  ME  +H + P   T  ++  A      +     +H  +++ +      L   
Sbjct: 336 EALEIFSDMEKESH-LSPDETTLVIVLSAIAQLGRLSKAMDMHLYIVEKQFFLGGKLGVA 394

Query: 373 LISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPN 432
           LI MY+KCG I +A  +F  + ++ +  WN+M+ G + HGL      +   +      P+
Sbjct: 395 LIDMYSKCGSIQHAMLVFKGIENKSIDHWNAMIGGLAIHGLGESAFDMLLQIERRSIKPD 454

Query: 433 SVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFV 492
            +TF+G+L+ACSH+GLV  G   F  M   +KI+P  +HY  M+++L R+G I+ A+  +
Sbjct: 455 DITFVGLLNACSHSGLVKEGLLCFELMRRKHKIEPRLQHYGCMVDILSRSGSIELAKNLI 514

Query: 493 LRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRH 552
             +P EP+  IW   L AC       E  E  AK L+     N  ++V+L N+YA+ G+ 
Sbjct: 515 EEMPIEPNDVIWRTFLAACNH-HKEFETGELVAKHLIWEAGYNPSSYVLLSNLYASFGKW 573

Query: 553 VEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFL 586
            +  ++R  M  + + KVPGCSW+  +G +  F 
Sbjct: 574 KDVRRIRTIMKERKIEKVPGCSWIELDGRVHEFF 607



 Score =  189 bits (480), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 125/437 (28%), Positives = 234/437 (53%), Gaps = 20/437 (4%)

Query: 22  SKRGFIDEAKALFQLMPQRNVVS----YNAMLSGFLQNGRLSEARRLFEEMPERNVVSWT 77
           S+ G + E   +   + +  + S     N ++  +L+ G L  AR++F+ MP+R+ VS+ 
Sbjct: 136 SRLGLVKEGMQIHGFLKKTGLWSDLFLQNCLIGLYLKCGWLGFARQIFDRMPQRDSVSYN 195

Query: 78  AMICGLADAGRVCEARKLFEEMPE--RNVVSWNSMVVGLIRNGE-LNEARKVFNSMPIKN 134
           +MI G    G    AR+LF+ MPE  +N++SWNSM+ G  +  + ++ A K+F+ MP K+
Sbjct: 196 SMIDGYVKCGSTESARELFDLMPEEMKNLISWNSMISGYAQTSDGVDIASKLFSEMPDKD 255

Query: 135 VISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPR 194
           +ISWN+MI GYV+   + +A  LF+ M  R+VVTW++MI GY + G V +   LF +MP 
Sbjct: 256 LISWNSMIDGYVKHGRIEDAKYLFDVMPRRDVVTWSTMIDGYAKLGFVHQAKTLFDQMPH 315

Query: 195 KNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEA 254
           ++VVS+ +MI G+  N ++ E+L +F +M+   ++  + +  +   +++   + GRL +A
Sbjct: 316 RDVVSYNSMIAGYVQNRYNMEALEIFSDMEK--ESHLSPDETTLVIVLSAIAQLGRLSKA 373

Query: 255 QNLFDTVPVRDEI----SWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQN 310
            ++   +  +          ++ID Y   G + +A  +F  + ++    W AMI GL  +
Sbjct: 374 MDMHLYIVEKQFFLGGKLGVALIDMYSKCGSIQHAMLVFKGIENKSIDHWNAMIGGLAIH 433

Query: 311 ELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCV-LMKTESESDLIL 369
            L   A  + +++    + P + TF  L  A   +  +  G  + C  LM+ + + +  L
Sbjct: 434 GLGESAFDMLLQIERRSIKPDDITFVGLLNACSHSGLVKEG--LLCFELMRRKHKIEPRL 491

Query: 370 EN--CLISMYAKCGVIDNAYNIFSNM-VSRDLVSWNSMVMGFSHHGLANETLKVFESML- 425
           ++  C++ + ++ G I+ A N+   M +  + V W + +   +HH        V + ++ 
Sbjct: 492 QHYGCMVDILSRSGSIELAKNLIEEMPIEPNDVIWRTFLAACNHHKEFETGELVAKHLIW 551

Query: 426 ESGTHPNSVTFLGILSA 442
           E+G +P+S   L  L A
Sbjct: 552 EAGYNPSSYVLLSNLYA 568



 Score =  108 bits (271), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 71/281 (25%), Positives = 148/281 (52%), Gaps = 16/281 (5%)

Query: 7   PKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFE 66
           P   ++   S I  Y K G I++AK LF +MP+R+VV+++ M+ G+ + G + +A+ LF+
Sbjct: 252 PDKDLISWNSMIDGYVKHGRIEDAKYLFDVMPRRDVVTWSTMIDGYAKLGFVHQAKTLFD 311

Query: 67  EMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRN-----GELN 121
           +MP R+VVS+ +MI G        EA ++F +M + + +S +   + ++ +     G L+
Sbjct: 312 QMPHRDVVSYNSMIAGYVQNRYNMEALEIFSDMEKESHLSPDETTLVIVLSAIAQLGRLS 371

Query: 122 EARKVFNSMPIKNVISWN----AMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYC 177
           +A  +   +  K          A+I  Y +C  +  A+++F+ +E +++  W +MI G  
Sbjct: 372 KAMDMHLYIVEKQFFLGGKLGVALIDMYSKCGSIQHAMLVFKGIENKSIDHWNAMIGGLA 431

Query: 178 RAGEVEEGYCLFRRMPRKNV----VSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNC 233
             G  E  + +  ++ R+++    +++  ++   + +G  KE LL F  M+    +    
Sbjct: 432 IHGLGESAFDMLLQIERRSIKPDDITFVGLLNACSHSGLVKEGLLCFELMRR--KHKIEP 489

Query: 234 NVQSCNSMINGYIRFGRLEEAQNLFDTVPVR-DEISWTSMI 273
            +Q    M++   R G +E A+NL + +P+  +++ W + +
Sbjct: 490 RLQHYGCMVDILSRSGSIELAKNLIEEMPIEPNDVIWRTFL 530



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 87/325 (26%), Positives = 136/325 (41%), Gaps = 40/325 (12%)

Query: 221 IEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVG 280
           I++ G C N  + N      + NG+I+   L            R  +++ +    Y    
Sbjct: 18  IKLLGSCKNSEDVNKIHARLVTNGFIKNPNL----------TTRIVLAFAASRRPY---- 63

Query: 281 QVSNAYYLFHNMPDR----------DAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPP 330
            V  A ++FH    R          D   W A+I           A  LF  M  +GV  
Sbjct: 64  XVEFARFVFHEYXIRSFSPGGGDXEDXYLWNAVIKSHSHGTDPRRALLLFCLMLENGVSV 123

Query: 331 LNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIF 390
              + S++  A      +  G QIH  L KT   SDL L+NCLI +Y KCG +  A  IF
Sbjct: 124 DKFSLSLVLKACSRLGLVKEGMQIHGFLKKTGLWSDLFLQNCLIGLYLKCGWLGFARQIF 183

Query: 391 SNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGL-V 449
             M  RD VS+NSM+ G+   G      ++F+ M E     N +++  ++S  +     V
Sbjct: 184 DRMPQRDSVSYNSMIDGYVKCGSTESARELFDLMPEE--MKNLISWNSMISGYAQTSDGV 241

Query: 450 SRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLG 509
               +LF+ M D   I      + SMI+   + G+I++A+     +P   D   W  ++ 
Sbjct: 242 DIASKLFSEMPDKDLIS-----WNSMIDGYVKHGRIEDAKYLFDVMP-RRDVVTWSTMI- 294

Query: 510 ACGFCEGNAEIA-EHAAKRLLELDP 533
                +G A++   H AK L +  P
Sbjct: 295 -----DGYAKLGFVHQAKTLFDQMP 314


>gi|242076488|ref|XP_002448180.1| hypothetical protein SORBIDRAFT_06g022530 [Sorghum bicolor]
 gi|241939363|gb|EES12508.1| hypothetical protein SORBIDRAFT_06g022530 [Sorghum bicolor]
          Length = 1029

 Score =  286 bits (733), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 190/626 (30%), Positives = 308/626 (49%), Gaps = 52/626 (8%)

Query: 15  TSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMP----- 69
           +S I  Y K G I +AK +F    ++N+V +NAML GF+QN    E  ++F+ M      
Sbjct: 366 SSLINLYVKHGCISDAKKVFDFSTEKNIVMWNAMLYGFVQNDLQEETIQMFQYMRRADLE 425

Query: 70  ----------------------------------ERNVVSWTAMICGLADAGRVCEARKL 95
                                             + ++    AM+   +  G +  A+ L
Sbjct: 426 ADDFTFVSVLGACINLDSLDIGRQVHCITIKNSMDADLFVANAMLDMYSKLGAIDVAKAL 485

Query: 96  FEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAI 155
           F  +P ++ VSWN+++VGL  N E  EA  +   M    +       A  +  C    A 
Sbjct: 486 FSLIPGKDSVSWNALIVGLAHNEEEEEAVYMLKRMKCYGIAPDEVSFATAINACSNIRAT 545

Query: 156 VLFEEME----ERNVVT----WTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGF 207
              +++     + NV +     +S+I  Y + G+VE    +   +   ++V   A+I G 
Sbjct: 546 ETGKQIHCASIKYNVCSNHAVGSSLIDLYSKFGDVESSRKVLAHVDASSMVPINALITGL 605

Query: 208 AWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIR--FGRLEEAQNLFDTVPVRD 265
             N    E++ LF ++       +N    S  S   G +    G+   +  L   +  +D
Sbjct: 606 VQNNREDEAIELFQQVLKDGFKPSNFTFASILSGCTGPVSSVIGKQVHSYTLKSALLNQD 665

Query: 266 EISWTSMIDGYLSVGQVSNAYYLFHNMPD-RDAVAWTAMISGLVQNELFVEATYLFMEMR 324
                S++  YL    + +A  L   +PD ++ V WTA ISG  QN    ++  +F  MR
Sbjct: 666 TSLGISLVGIYLKCKLLEDANKLLAEVPDHKNLVEWTATISGYAQNGYSDQSLVMFWRMR 725

Query: 325 AHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVID 384
           +H V    ATF+ +  A    A +  G++IH +++K+   S     + L+ MY+KCG + 
Sbjct: 726 SHDVRSDEATFASVLKACSEIAALTDGKEIHGLIIKSGFVSYETAASALMDMYSKCGDVI 785

Query: 385 NAYNIFSNMVSR-DLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSAC 443
           +++ IF  + ++ +++ WNSM++GF+ +G ANE L +F+ M ES   P+ VT LG+L AC
Sbjct: 786 SSFEIFKELKNKQNIMPWNSMIVGFAKNGYANEALLLFQKMQESQLKPDEVTLLGVLIAC 845

Query: 444 SHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRI 503
           SHAGL+S G  LF++M  VY I P  +HY  +I+LLGR G ++EA+E + +LPF  D  I
Sbjct: 846 SHAGLISEGRNLFDSMSQVYGIVPRVDHYACLIDLLGRGGHLQEAQEVIDQLPFRADGVI 905

Query: 504 WGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMG 563
           W   L AC     + E  + AAK+L+E++P  +  +V L +++AA+G  VE    R  M 
Sbjct: 906 WATFLAACQM-HKDEERGKVAAKKLVEMEPQRSSTYVFLSSLHAAAGNWVEAKVAREAMR 964

Query: 564 LKGVRKVPGCSWLMRNGGIQMFLSGD 589
            KGV K PGCSW+       +F+  D
Sbjct: 965 EKGVMKFPGCSWITVGNKTNLFVVQD 990



 Score =  173 bits (438), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 105/383 (27%), Positives = 194/383 (50%), Gaps = 14/383 (3%)

Query: 119 ELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEER----NVVTWTSMIS 174
           E+ +AR+VF+ +   + I W +MIAGY       +A+ LF  ME+     + VT+ ++IS
Sbjct: 210 EVKDARRVFDGIACPDTICWASMIAGYHRVGRYQQALALFSRMEKMGSAPDQVTYVTIIS 269

Query: 175 GYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCN 234
                G + +   L +R+   + V+W A+I  ++ +G   E   L+ +MK     G    
Sbjct: 270 TLASMGRLSDARTLLKRIQMPSTVAWNAVISSYSQSGLESEVFGLYKDMK---RQGLMPT 326

Query: 235 VQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISW-----TSMIDGYLSVGQVSNAYYLF 289
             +  SM++        +E Q +     V+  +       +S+I+ Y+  G +S+A  +F
Sbjct: 327 RSTFASMLSAAASMTAFDEGQQIH-AAAVKHGLDANVFVGSSLINLYVKHGCISDAKKVF 385

Query: 290 HNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANID 349
               +++ V W AM+ G VQN+L  E   +F  MR   +   + TF  + GA     ++D
Sbjct: 386 DFSTEKNIVMWNAMLYGFVQNDLQEETIQMFQYMRRADLEADDFTFVSVLGACINLDSLD 445

Query: 350 LGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFS 409
           +GRQ+HC+ +K   ++DL + N ++ MY+K G ID A  +FS +  +D VSWN++++G +
Sbjct: 446 IGRQVHCITIKNSMDADLFVANAMLDMYSKLGAIDVAKALFSLIPGKDSVSWNALIVGLA 505

Query: 410 HHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGP 469
           H+    E + + + M   G  P+ V+F   ++ACS+      G ++  A    Y +    
Sbjct: 506 HNEEEEEAVYMLKRMKCYGIAPDEVSFATAINACSNIRATETGKQIHCASIK-YNVCSNH 564

Query: 470 EHYVSMINLLGRAGKIKEAEEFV 492
               S+I+L  + G ++ + + +
Sbjct: 565 AVGSSLIDLYSKFGDVESSRKVL 587



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 110/522 (21%), Positives = 226/522 (43%), Gaps = 113/522 (21%)

Query: 58  LSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPER----NVVSWNSMVVG 113
           + +ARR+F+ +   + + W +MI G    GR  +A  LF  M +     + V++ +++  
Sbjct: 211 VKDARRVFDGIACPDTICWASMIAGYHRVGRYQQALALFSRMEKMGSAPDQVTYVTIIST 270

Query: 114 LIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEER--------- 164
           L   G L++AR +   + + + ++WNA+I+ Y +  +  E   L+++M+ +         
Sbjct: 271 LASMGRLSDARTLLKRIQMPSTVAWNAVISSYSQSGLESEVFGLYKDMKRQGLMPTRSTF 330

Query: 165 ------------------------------NVVTWTSMISGYCRAGEVEEGYCLFRRMPR 194
                                         NV   +S+I+ Y + G + +   +F     
Sbjct: 331 ASMLSAAASMTAFDEGQQIHAAAVKHGLDANVFVGSSLINLYVKHGCISDAKKVFDFSTE 390

Query: 195 KNVVSWTAMIGGFAWNGFHKESLLLFIEMK---------------GICDNGNNCNVQS-- 237
           KN+V W AM+ GF  N   +E++ +F  M+               G C N ++ ++    
Sbjct: 391 KNIVMWNAMLYGFVQNDLQEETIQMFQYMRRADLEADDFTFVSVLGACINLDSLDIGRQV 450

Query: 238 ---------------CNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQV 282
                           N+M++ Y + G ++ A+ LF  +P +D +SW             
Sbjct: 451 HCITIKNSMDADLFVANAMLDMYSKLGAIDVAKALFSLIPGKDSVSW------------- 497

Query: 283 SNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAA 342
                              A+I GL  NE   EA Y+   M+ +G+ P   +F+    A 
Sbjct: 498 ------------------NALIVGLAHNEEEEEAVYMLKRMKCYGIAPDEVSFATAINAC 539

Query: 343 GATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWN 402
                 + G+QIHC  +K    S+  + + LI +Y+K G ++++  + +++ +  +V  N
Sbjct: 540 SNIRATETGKQIHCASIKYNVCSNHAVGSSLIDLYSKFGDVESSRKVLAHVDASSMVPIN 599

Query: 403 SMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSR--GWELFNAMF 460
           +++ G   +   +E +++F+ +L+ G  P++ TF  ILS C+  G VS   G ++ +   
Sbjct: 600 ALITGLVQNNREDEAIELFQQVLKDGFKPSNFTFASILSGCT--GPVSSVIGKQVHSYTL 657

Query: 461 DVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHR 502
               +       +S++ +  +   +++A + +  +   PDH+
Sbjct: 658 KSALLNQDTSLGISLVGIYLKCKLLEDANKLLAEV---PDHK 696



 Score =  150 bits (380), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 129/534 (24%), Positives = 235/534 (44%), Gaps = 103/534 (19%)

Query: 16  SSITKYSKRGFIDEAKALFQLMPQR----NVVSYNAMLSGFLQNGRLSEARRLFEEMPER 71
           S I  Y + G   +A ALF  M +     + V+Y  ++S     GRLS+AR L + +   
Sbjct: 231 SMIAGYHRVGRYQQALALFSRMEKMGSAPDQVTYVTIISTLASMGRLSDARTLLKRIQMP 290

Query: 72  NVVSWTAMICGLADAGRVCEARKLFEE------MPER----------------------- 102
           + V+W A+I   + +G   E   L+++      MP R                       
Sbjct: 291 STVAWNAVISSYSQSGLESEVFGLYKDMKRQGLMPTRSTFASMLSAAASMTAFDEGQQIH 350

Query: 103 ----------NVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMG 152
                     NV   +S++   +++G +++A+KVF+    KN++ WNAM+ G+V+  +  
Sbjct: 351 AAAVKHGLDANVFVGSSLINLYVKHGCISDAKKVFDFSTEKNIVMWNAMLYGFVQNDLQE 410

Query: 153 EAIVLFEEME----ERNVVTWTS-----------------------------------MI 173
           E I +F+ M     E +  T+ S                                   M+
Sbjct: 411 ETIQMFQYMRRADLEADDFTFVSVLGACINLDSLDIGRQVHCITIKNSMDADLFVANAML 470

Query: 174 SGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMK--GICDNGN 231
             Y + G ++    LF  +P K+ VSW A+I G A N   +E++ +   MK  GI  +  
Sbjct: 471 DMYSKLGAIDVAKALFSLIPGKDSVSWNALIVGLAHNEEEEEAVYMLKRMKCYGIAPDEV 530

Query: 232 N--CNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEIS-----WTSMIDGYLSVGQVSN 284
           +    + +C+++        R  E         ++  +       +S+ID Y   G V +
Sbjct: 531 SFATAINACSNI--------RATETGKQIHCASIKYNVCSNHAVGSSLIDLYSKFGDVES 582

Query: 285 AYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATF-SVLFGAAG 343
           +  +  ++     V   A+I+GLVQN    EA  LF ++   G  P N TF S+L G  G
Sbjct: 583 SRKVLAHVDASSMVPINALITGLVQNNREDEAIELFQQVLKDGFKPSNFTFASILSGCTG 642

Query: 344 ATANIDLGRQIHCVLMKTE-SESDLILENCLISMYAKCGVIDNAYNIFSNMVS-RDLVSW 401
             +++ +G+Q+H   +K+     D  L   L+ +Y KC ++++A  + + +   ++LV W
Sbjct: 643 PVSSV-IGKQVHSYTLKSALLNQDTSLGISLVGIYLKCKLLEDANKLLAEVPDHKNLVEW 701

Query: 402 NSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWEL 455
            + + G++ +G ++++L +F  M       +  TF  +L ACS    ++ G E+
Sbjct: 702 TATISGYAQNGYSDQSLVMFWRMRSHDVRSDEATFASVLKACSEIAALTDGKEI 755



 Score =  118 bits (295), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 81/314 (25%), Positives = 146/314 (46%), Gaps = 42/314 (13%)

Query: 233 CNVQSCNS-MINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHN 291
           C+   C + +++ Y +   +++A+ +FD +   D I W SMI GY  VG+   A  LF  
Sbjct: 192 CSSAFCQAGLVDMYAKCVEVKDARRVFDGIACPDTICWASMIAGYHRVGRYQQALALFSR 251

Query: 292 M------PDR-----------------------------DAVAWTAMISGLVQNELFVEA 316
           M      PD+                               VAW A+IS   Q+ L  E 
Sbjct: 252 MEKMGSAPDQVTYVTIISTLASMGRLSDARTLLKRIQMPSTVAWNAVISSYSQSGLESEV 311

Query: 317 TYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISM 376
             L+ +M+  G+ P  +TF+ +  AA +    D G+QIH   +K   ++++ + + LI++
Sbjct: 312 FGLYKDMKRQGLMPTRSTFASMLSAAASMTAFDEGQQIHAAAVKHGLDANVFVGSSLINL 371

Query: 377 YAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTF 436
           Y K G I +A  +F     +++V WN+M+ GF  + L  ET+++F+ M  +    +  TF
Sbjct: 372 YVKHGCISDAKKVFDFSTEKNIVMWNAMLYGFVQNDLQEETIQMFQYMRRADLEADDFTF 431

Query: 437 LGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYV--SMINLLGRAGKIKEAEEFVLR 494
           + +L AC +   +  G ++        K     + +V  +M+++  + G I  A+     
Sbjct: 432 VSVLGACINLDSLDIGRQVHCITI---KNSMDADLFVANAMLDMYSKLGAIDVAKALFSL 488

Query: 495 LPFEPDHRIWGALL 508
           +P + D   W AL+
Sbjct: 489 IPGK-DSVSWNALI 501



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 63/242 (26%), Positives = 107/242 (44%), Gaps = 23/242 (9%)

Query: 320 FMEMRAH-GVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYA 378
           F  +R   G  P     +V+  A      ++ GRQ+HC ++K+   S    +  L+ MYA
Sbjct: 147 FQRLRCSIGGTPDQFGLAVVLSACSRLGALEQGRQVHCDVLKSGFCSSAFCQAGLVDMYA 206

Query: 379 KCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLG 438
           KC  + +A  +F  +   D + W SM+ G+   G   + L +F  M + G+ P+ VT++ 
Sbjct: 207 KCVEVKDARRVFDGIACPDTICWASMIAGYHRVGRYQQALALFSRMEKMGSAPDQVTYVT 266

Query: 439 ILSACSHAGLVSRGWELFNAMFDVYKIQ-PGPEHYVSMINLLGRAGKIKEAEEFVL---- 493
           I+S  +  G +S    L        +IQ P    + ++I+   ++G   E+E F L    
Sbjct: 267 IISTLASMGRLSDARTLLK------RIQMPSTVAWNAVISSYSQSG--LESEVFGLYKDM 318

Query: 494 -RLPFEPDHRIWGALLGAC----GFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAA 548
            R    P    + ++L A      F EG  +I   A K  L+ +     +   L N+Y  
Sbjct: 319 KRQGLMPTRSTFASMLSAAASMTAFDEGQ-QIHAAAVKHGLDANVFVGSS---LINLYVK 374

Query: 549 SG 550
            G
Sbjct: 375 HG 376


>gi|307136183|gb|ADN34022.1| hypothetical protein [Cucumis melo subsp. melo]
          Length = 773

 Score =  286 bits (733), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 152/434 (35%), Positives = 240/434 (55%), Gaps = 5/434 (1%)

Query: 158 FEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESL 217
           + EME  N+      IS       V +   +F  MP K++VSW  +I G A NG + E+L
Sbjct: 229 YREMEACNLGQQIKDISHSMSVDSVRK---IFEMMPEKDLVSWNTIIAGNARNGLYGETL 285

Query: 218 LLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEIS-WTSMIDGY 276
            +  EM G     ++  + S   +I   +   + +E         +  E+   +S+ID Y
Sbjct: 286 TMVREMGGANLKPDSFTLSSVLPLIAENVDISKGKEIHGCSIRQGLDAEVYVASSLIDMY 345

Query: 277 LSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFS 336
               +V ++Y +F  + +RD ++W ++I+G VQN LF E    F +M    + P + +FS
Sbjct: 346 AKCTRVVDSYRVFTLLTERDGISWNSIIAGCVQNGLFDEGLKFFRQMLMAKIKPKSYSFS 405

Query: 337 VLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSR 396
            +  A      + LG+Q+H  + +   + ++ + + L+ MYAKCG I  A  IF  M  R
Sbjct: 406 SIMPACAHLTTLHLGKQLHGYITRNGFDENIFIASSLVDMYAKCGNIRTARQIFDRMRLR 465

Query: 397 DLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELF 456
           D+VSW +M+MG + HG A + +++FE M   G  PN V F+ +L+ACSHAGLV   W+ F
Sbjct: 466 DMVSWTAMIMGCALHGHALDAIELFEQMKTEGIEPNYVAFMAVLTACSHAGLVDEAWKYF 525

Query: 457 NAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEG 516
           N+M   + I PG EHY ++ +LLGRAG+++EA +F+  +P  P   +W  LL AC     
Sbjct: 526 NSMTLDFGIAPGVEHYAAVSDLLGRAGRLEEAYDFICGMPIGPTGSVWATLLSACRV-HK 584

Query: 517 NAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWL 576
           N ++AE  A R+LE+DP N  A+++L NIY+A+ R  E  K R  +   G+RK P CSW+
Sbjct: 585 NVDMAEKVANRILEVDPKNTGAYILLANIYSAARRWKEAAKWRASLRRTGIRKTPACSWI 644

Query: 577 MRNGGIQMFLSGDK 590
                +  F++GD+
Sbjct: 645 EVRNKVYAFMAGDE 658



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 79/303 (26%), Positives = 131/303 (43%), Gaps = 48/303 (15%)

Query: 89  VCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKN-------------- 134
           V   RK+FE MPE+++VSWN+++ G  RNG   E   +   M   N              
Sbjct: 250 VDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYGETLTMVREMGGANLKPDSFTLSSVLPL 309

Query: 135 -------------------------VISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTW 169
                                    V   +++I  Y +C  + ++  +F  + ER+ ++W
Sbjct: 310 IAENVDISKGKEIHGCSIRQGLDAEVYVASSLIDMYAKCTRVVDSYRVFTLLTERDGISW 369

Query: 170 TSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKG-ICD 228
            S+I+G  + G  +EG   FR+M    +   +           H  +L L  ++ G I  
Sbjct: 370 NSIIAGCVQNGLFDEGLKFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLGKQLHGYITR 429

Query: 229 NGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYL 288
           NG + N+   +S+++ Y + G +  A+ +FD + +RD +SWT+MI G    G   +A  L
Sbjct: 430 NGFDENIFIASSLVDMYAKCGNIRTARQIFDRMRLRDMVSWTAMIMGCALHGHALDAIEL 489

Query: 289 FHNMP----DRDAVAWTAMISGLVQNELFVEATYLFMEMRAH-GVPP---LNATFSVLFG 340
           F  M     + + VA+ A+++      L  EA   F  M    G+ P     A  S L G
Sbjct: 490 FEQMKTEGIEPNYVAFMAVLTACSHAGLVDEAWKYFNSMTLDFGIAPGVEHYAAVSDLLG 549

Query: 341 AAG 343
            AG
Sbjct: 550 RAG 552



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 72/333 (21%), Positives = 144/333 (43%), Gaps = 55/333 (16%)

Query: 13  HLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERN 72
           +L   I   S    +D  + +F++MP++++VS+N +++G  +NG   E   +  EM   N
Sbjct: 236 NLGQQIKDISHSMSVDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYGETLTMVREMGGAN 295

Query: 73  ---------------------------------------VVSWTAMICGLADAGRVCEAR 93
                                                  V   +++I   A   RV ++ 
Sbjct: 296 LKPDSFTLSSVLPLIAENVDISKGKEIHGCSIRQGLDAEVYVASSLIDMYAKCTRVVDSY 355

Query: 94  KLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGE 153
           ++F  + ER+ +SWNS++ G ++NG  +E  K F  M +  +   +   +  +  C    
Sbjct: 356 RVFTLLTERDGISWNSIIAGCVQNGLFDEGLKFFRQMLMAKIKPKSYSFSSIMPACAHLT 415

Query: 154 AIVLFEEME--------ERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIG 205
            + L +++         + N+   +S++  Y + G +     +F RM  +++VSWTAMI 
Sbjct: 416 TLHLGKQLHGYITRNGFDENIFIASSLVDMYAKCGNIRTARQIFDRMRLRDMVSWTAMIM 475

Query: 206 GFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRD 265
           G A +G   +++ LF +MK     G   N  +  +++      G ++EA   F+++ +  
Sbjct: 476 GCALHGHALDAIELFEQMK---TEGIEPNYVAFMAVLTACSHAGLVDEAWKYFNSMTLDF 532

Query: 266 EIS-----WTSMIDGYLSVGQVSNAYYLFHNMP 293
            I+     + ++ D     G++  AY     MP
Sbjct: 533 GIAPGVEHYAAVSDLLGRAGRLEEAYDFICGMP 565



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 39/126 (30%), Positives = 65/126 (51%), Gaps = 15/126 (11%)

Query: 11  VVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPE 70
            +HL   +  Y  R   DE           N+   ++++  + + G +  AR++F+ M  
Sbjct: 416 TLHLGKQLHGYITRNGFDE-----------NIFIASSLVDMYAKCGNIRTARQIFDRMRL 464

Query: 71  RNVVSWTAMICGLADAGRVCEARKLFEEMP----ERNVVSWNSMVVGLIRNGELNEARKV 126
           R++VSWTAMI G A  G   +A +LFE+M     E N V++ +++      G ++EA K 
Sbjct: 465 RDMVSWTAMIMGCALHGHALDAIELFEQMKTEGIEPNYVAFMAVLTACSHAGLVDEAWKY 524

Query: 127 FNSMPI 132
           FNSM +
Sbjct: 525 FNSMTL 530



 Score = 43.9 bits (102), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 18/69 (26%), Positives = 40/69 (57%)

Query: 376 MYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVT 435
           +Y+   ++ ++  +F+ +     ++W S++  ++ HGL +++L  F  ML SG +P+   
Sbjct: 51  IYSHINLLHDSLRLFNTLHFPPALAWKSVIRCYTSHGLPHKSLGSFIGMLASGLYPDHNV 110

Query: 436 FLGILSACS 444
           F  +L AC+
Sbjct: 111 FPSVLKACA 119



 Score = 41.6 bits (96), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 25/104 (24%), Positives = 52/104 (50%)

Query: 276 YLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATF 335
           Y  +  + ++  LF+ +    A+AW ++I     + L  ++   F+ M A G+ P +  F
Sbjct: 52  YSHINLLHDSLRLFNTLHFPPALAWKSVIRCYTSHGLPHKSLGSFIGMLASGLYPDHNVF 111

Query: 336 SVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAK 379
             +  A     +++LG  +H  +++   + DL   N L++MY+K
Sbjct: 112 PSVLKACAMLMDLNLGESLHGYIIRVGLDFDLYTGNALMNMYSK 155


>gi|345505228|gb|AEN99838.1| chlororespiratory reduction 4, partial [Matthiola incana]
          Length = 584

 Score =  286 bits (733), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 159/482 (32%), Positives = 255/482 (52%), Gaps = 46/482 (9%)

Query: 111 VVGL-IRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEM--EERNVV 167
           ++GL ++ G L  AR+VF+ MP ++ +S+N+MI GYV+C ++  A  LF+ M  E++N++
Sbjct: 134 LIGLYLKCGCLGFARQVFDRMPQRDSVSYNSMIDGYVKCGLIESARELFDLMPREKKNLI 193

Query: 168 TWTSMISGYCRAGE-VEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGI 226
           +W  MISGY ++ + V     LF  MP K+++SW                          
Sbjct: 194 SWNCMISGYTQSEDGVNVASKLFDEMPEKDLISW-------------------------- 227

Query: 227 CDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAY 286
                       NS+I+GY++  R+E+A++LFD +P +D ++W +MIDGY  +G V  A 
Sbjct: 228 ------------NSLIDGYVKHRRIEDAKSLFDLMPRKDVVTWATMIDGYAKLGFVHQAK 275

Query: 287 YLFHNMPDRDAVAWTAMISGLVQNELFVEATYLF--MEMRAHGVPPLNATFSVLFGAAGA 344
            LF  MP RD VA+ +M++G VQN+   EA  +F  ME  +H + P   T  ++  A   
Sbjct: 276 KLFDEMPQRDVVAYNSMMAGYVQNKYHAEAIGIFNDMEKESH-LSPDETTLVIVLSAIAQ 334

Query: 345 TANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSM 404
              +     IH  +M  +      L   LI  Y+KCG I  +  +F  + ++ +  WN+M
Sbjct: 335 LGRLSKAVDIHLYIMDNKFRLGGKLGVALIDTYSKCGSIQKSMRVFEEIENKSIDHWNAM 394

Query: 405 VMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYK 464
           + G + HGL      +   + +    P+ +TF+G+L+ACSH+GLV  G   F  M   +K
Sbjct: 395 IGGLAIHGLGESAFDMLLQIEKRSIKPDDITFIGVLNACSHSGLVKEGLLCFELMRRKHK 454

Query: 465 IQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHA 524
           I+P  +HY  M+++L R+G I+ A+  +  +P EP+  IW   L AC       E  E  
Sbjct: 455 IEPKLQHYGCMVDILSRSGSIELAKNLIEEMPIEPNDVIWRTFLTACS-NHKEFETGELV 513

Query: 525 AKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQM 584
           AK L      N  + V+L N+YA+ G   E  ++R  M  + +RK+PGCSW+  +G +  
Sbjct: 514 AKHLFLQGGYNPSSFVLLSNMYASFGMWKEVRRVRTTMKERKLRKIPGCSWIELDGNVHE 573

Query: 585 FL 586
           F 
Sbjct: 574 FF 575



 Score =  179 bits (455), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 119/437 (27%), Positives = 230/437 (52%), Gaps = 20/437 (4%)

Query: 22  SKRGFIDEAKALFQLMPQRNVVS----YNAMLSGFLQNGRLSEARRLFEEMPERNVVSWT 77
           S+ GF+D    +   + +  + S     N ++  +L+ G L  AR++F+ MP+R+ VS+ 
Sbjct: 104 SRLGFVDFGMQVHGFLRKTGIYSDLFLQNCLIGLYLKCGCLGFARQVFDRMPQRDSVSYN 163

Query: 78  AMICGLADAGRVCEARKLFEEMP--ERNVVSWNSMVVGLIRNGE-LNEARKVFNSMPIKN 134
           +MI G    G +  AR+LF+ MP  ++N++SWN M+ G  ++ + +N A K+F+ MP K+
Sbjct: 164 SMIDGYVKCGLIESARELFDLMPREKKNLISWNCMISGYTQSEDGVNVASKLFDEMPEKD 223

Query: 135 VISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPR 194
           +ISWN++I GYV+   + +A  LF+ M  ++VVTW +MI GY + G V +   LF  MP+
Sbjct: 224 LISWNSLIDGYVKHRRIEDAKSLFDLMPRKDVVTWATMIDGYAKLGFVHQAKKLFDEMPQ 283

Query: 195 KNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEA 254
           ++VV++ +M+ G+  N +H E++ +F +M+   ++  + +  +   +++   + GRL +A
Sbjct: 284 RDVVAYNSMMAGYVQNKYHAEAIGIFNDMEK--ESHLSPDETTLVIVLSAIAQLGRLSKA 341

Query: 255 QN----LFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQN 310
            +    + D           ++ID Y   G +  +  +F  + ++    W AMI GL  +
Sbjct: 342 VDIHLYIMDNKFRLGGKLGVALIDTYSKCGSIQKSMRVFEEIENKSIDHWNAMIGGLAIH 401

Query: 311 ELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCV-LMKTESESDLIL 369
            L   A  + +++    + P + TF  +  A   +  +  G  + C  LM+ + + +  L
Sbjct: 402 GLGESAFDMLLQIEKRSIKPDDITFIGVLNACSHSGLVKEG--LLCFELMRRKHKIEPKL 459

Query: 370 EN--CLISMYAKCGVIDNAYNIFSNM-VSRDLVSWNSMVMGFSHHG-LANETLKVFESML 425
           ++  C++ + ++ G I+ A N+   M +  + V W + +   S+H       L      L
Sbjct: 460 QHYGCMVDILSRSGSIELAKNLIEEMPIEPNDVIWRTFLTACSNHKEFETGELVAKHLFL 519

Query: 426 ESGTHPNSVTFLGILSA 442
           + G +P+S   L  + A
Sbjct: 520 QGGYNPSSFVLLSNMYA 536



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 68/282 (24%), Positives = 151/282 (53%), Gaps = 18/282 (6%)

Query: 7   PKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFE 66
           P+  ++   S I  Y K   I++AK+LF LMP+++VV++  M+ G+ + G + +A++LF+
Sbjct: 220 PEKDLISWNSLIDGYVKHRRIEDAKSLFDLMPRKDVVTWATMIDGYAKLGFVHQAKKLFD 279

Query: 67  EMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKV 126
           EMP+R+VV++ +M+ G        EA  +F +M + + +S +   + ++ +  + +  ++
Sbjct: 280 EMPQRDVVAYNSMMAGYVQNKYHAEAIGIFNDMEKESHLSPDETTLVIVLSA-IAQLGRL 338

Query: 127 FNSMPIKNVISWN----------AMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGY 176
             ++ I   I  N          A+I  Y +C  + +++ +FEE+E +++  W +MI G 
Sbjct: 339 SKAVDIHLYIMDNKFRLGGKLGVALIDTYSKCGSIQKSMRVFEEIENKSIDHWNAMIGGL 398

Query: 177 CRAGEVEEGYCLFRRMPRKNV----VSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNN 232
              G  E  + +  ++ ++++    +++  ++   + +G  KE LL F  M+    +   
Sbjct: 399 AIHGLGESAFDMLLQIEKRSIKPDDITFIGVLNACSHSGLVKEGLLCFELMRR--KHKIE 456

Query: 233 CNVQSCNSMINGYIRFGRLEEAQNLFDTVPVR-DEISWTSMI 273
             +Q    M++   R G +E A+NL + +P+  +++ W + +
Sbjct: 457 PKLQHYGCMVDILSRSGSIELAKNLIEEMPIEPNDVIWRTFL 498



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 46/143 (32%), Positives = 68/143 (47%)

Query: 282 VSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGA 341
           + + Y++     + D   W A+I           A  LF  M  + V     + S++  A
Sbjct: 43  IFHEYHVSSYSVEEDPFLWNAVIKSFSHGVDPRNALLLFCLMIENSVSVDKFSISLVLKA 102

Query: 342 AGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSW 401
                 +D G Q+H  L KT   SDL L+NCLI +Y KCG +  A  +F  M  RD VS+
Sbjct: 103 CSRLGFVDFGMQVHGFLRKTGIYSDLFLQNCLIGLYLKCGCLGFARQVFDRMPQRDSVSY 162

Query: 402 NSMVMGFSHHGLANETLKVFESM 424
           NSM+ G+   GL     ++F+ M
Sbjct: 163 NSMIDGYVKCGLIESARELFDLM 185



 Score = 39.7 bits (91), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 42/190 (22%), Positives = 74/190 (38%), Gaps = 33/190 (17%)

Query: 374 ISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNS 433
           ++ +A+C  I + Y++ S  V  D   WN+++  FSH       L +F  M+E+    + 
Sbjct: 36  LAEFARC--IFHEYHVSSYSVEEDPFLWNAVIKSFSHGVDPRNALLLFCLMIENSVSVDK 93

Query: 434 VTFLGILSACSHAGLVSRGWE---------LFNAMF-------------------DVYKI 465
            +   +L ACS  G V  G +         +++ +F                    V+  
Sbjct: 94  FSISLVLKACSRLGFVDFGMQVHGFLRKTGIYSDLFLQNCLIGLYLKCGCLGFARQVFDR 153

Query: 466 QPGPE--HYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRI-WGALLGACGFCEGNAEIAE 522
            P  +   Y SMI+   + G I+ A E    +P E  + I W  ++      E    +A 
Sbjct: 154 MPQRDSVSYNSMIDGYVKCGLIESARELFDLMPREKKNLISWNCMISGYTQSEDGVNVAS 213

Query: 523 HAAKRLLELD 532
                + E D
Sbjct: 214 KLFDEMPEKD 223


>gi|242087005|ref|XP_002439335.1| hypothetical protein SORBIDRAFT_09g004560 [Sorghum bicolor]
 gi|241944620|gb|EES17765.1| hypothetical protein SORBIDRAFT_09g004560 [Sorghum bicolor]
          Length = 886

 Score =  286 bits (733), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 181/595 (30%), Positives = 313/595 (52%), Gaps = 47/595 (7%)

Query: 39  QRNVVSYNAMLSGFLQNGRLSEARRLFEEMPER---NVVSWTAMICGLADAGRVCEARKL 95
           + NV   NA+++ + ++G L +A  +F+E+  +   +V+SW +++           A  L
Sbjct: 181 ESNVFVCNALVAMYSRSGSLEDASLVFDEITRKGIDDVISWNSIVAAHVKGSNPRTALDL 240

Query: 96  FEEMP---------ER-NVVSWNSMVVGLIRNGELNEARKVFNSMPIKN-----VISWNA 140
           F EM          ER +++S  +++        L + +++ +S  I+N         NA
Sbjct: 241 FSEMTTIVHEKATNERSDIISIVNILPACASLKALPQTKEI-HSYAIRNGTFADAFVCNA 299

Query: 141 MIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKN---- 196
           +I  Y +C  M +A+ +F  ME ++VV+W +M++GY ++G+    + LF+ M ++N    
Sbjct: 300 LIDTYAKCGSMKDAVNVFNVMEFKDVVSWNAMVTGYTQSGKFGAAFELFKNMRKENIPLD 359

Query: 197 VVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQS----CNSMINGYIRFGRLE 252
           V++W+A+I G+A  G+ +E+L  F +M       N+  + S    C S+  G +  G   
Sbjct: 360 VITWSAVIAGYAQRGYGQEALDTFQQMILYGSEPNSVTIISLLSACASL--GALSQGMET 417

Query: 253 EAQNLFDTV-----------PVRDEISWTSMIDGYLSVGQVSNAYYLFHNMP--DRDAVA 299
            A +L   +              D +   ++ID Y        A  +F+++P  +R+ V 
Sbjct: 418 HAYSLKKCLLSLDNDFGGDGDGEDLVVHNALIDMYSKCRSFKAARTIFNSIPRRERNVVT 477

Query: 300 WTAMISGLVQNELFVEATYLFMEM--RAHGVPPLNATFSVLFGAAGATANIDLGRQIHCV 357
           WT MI G  Q     +A  LF EM  + + V P   T S +  A    +++ +G+QIH  
Sbjct: 478 WTVMIGGYAQYGDSNDALKLFSEMISKPYAVAPNAYTISCILMACAHLSSLRMGKQIHAY 537

Query: 358 LMKT-ESESDL-ILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLAN 415
           + +  E ES +  + NCLI MY+KCG +D A N+F +M  R+ VSW SM+ G+  HG   
Sbjct: 538 VTRHHEYESSVYFVANCLIDMYSKCGDVDTARNVFDSMPKRNEVSWTSMMSGYGMHGRGK 597

Query: 416 ETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSM 475
           E L +F+ M ++G  P+ ++FL +L ACSH+G+V +G + F+ M   Y +    +HY  +
Sbjct: 598 EALDIFDKMQKAGFVPDDISFLVLLYACSHSGMVDQGLDYFDIMRSDYGVIASAQHYACV 657

Query: 476 INLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLN 535
           I+LL R+G++ +A + +  +P EP   IW ALL AC     N E+AE+A  +L+ +   N
Sbjct: 658 IDLLARSGRLDKAWKTIQEMPMEPSAAIWVALLSACRV-HSNVELAEYALNKLVSMKAEN 716

Query: 536 APAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDK 590
             ++ ++ NIYA + R  +  ++R  M   G++K PGCSW+    G   F  GD+
Sbjct: 717 DGSYTLISNIYATARRWKDVARIRQLMKKSGIKKRPGCSWVQGKKGTASFFVGDR 771



 Score =  122 bits (305), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 109/411 (26%), Positives = 178/411 (43%), Gaps = 69/411 (16%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERN----V 73
           I  Y+K G + +A  +F +M  ++VVS+NAM++G+ Q+G+   A  LF+ M + N    V
Sbjct: 301 IDTYAKCGSMKDAVNVFNVMEFKDVVSWNAMVTGYTQSGKFGAAFELFKNMRKENIPLDV 360

Query: 74  VSWTAMICGLADAGRVCEARKLFEEM----PERNVVSWNSMVVGLIRNGELNEARKVFNS 129
           ++W+A+I G A  G   EA   F++M     E N V+  S++      G L++  +    
Sbjct: 361 ITWSAVIAGYAQRGYGQEALDTFQQMILYGSEPNSVTIISLLSACASLGALSQGMETHAY 420

Query: 130 MPIKNVISW----------------NAMIAGYVECCMMGEAIVLFEEM--EERNVVTWTS 171
              K ++S                 NA+I  Y +C     A  +F  +   ERNVVTWT 
Sbjct: 421 SLKKCLLSLDNDFGGDGDGEDLVVHNALIDMYSKCRSFKAARTIFNSIPRRERNVVTWTV 480

Query: 172 MISGYCRAGEVEEGYCLFRRMPRK--NVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDN 229
           MI GY + G+  +   LF  M  K   V      I        H  SL +  ++      
Sbjct: 481 MIGGYAQYGDSNDALKLFSEMISKPYAVAPNAYTISCILMACAHLSSLRMGKQIHAYVTR 540

Query: 230 GNNCNVQ---SCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAY 286
            +          N +I+ Y + G ++ A+N+FD++P R+E+SWTSM+ GY   G+     
Sbjct: 541 HHEYESSVYFVANCLIDMYSKCGDVDTARNVFDSMPKRNEVSWTSMMSGYGMHGRGK--- 597

Query: 287 YLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATA 346
                                       EA  +F +M+  G  P + +F VL  A   + 
Sbjct: 598 ----------------------------EALDIFDKMQKAGFVPDDISFLVLLYACSHSG 629

Query: 347 NIDLGRQIHCVLMKTESESDLILE----NCLISMYAKCGVIDNAYNIFSNM 393
            +D G     ++    S+  +I       C+I + A+ G +D A+     M
Sbjct: 630 MVDQGLDYFDIM---RSDYGVIASAQHYACVIDLLARSGRLDKAWKTIQEM 677



 Score =  105 bits (263), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 88/368 (23%), Positives = 147/368 (39%), Gaps = 90/368 (24%)

Query: 139 NAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPR---- 194
             ++A Y+ C    +A+ + E +     V W  ++  +   G ++    +  RM R    
Sbjct: 87  TGVVASYLACGATSDALSVLERVVPSPAVWWNLLVRAHIEEGRLDRAIGVSCRMLRAGTK 146

Query: 195 ----------KNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMING 244
                     K      +   G A++G              IC NG   NV  CN+++  
Sbjct: 147 PDHFTLPYALKACGELPSYRSGSAFHGL-------------ICCNGFESNVFVCNALVAM 193

Query: 245 YIRFGRLEEAQNLFDTVP---VRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWT 301
           Y R G LE+A  +FD +    + D ISW S++  ++       A  LF  M        T
Sbjct: 194 YSRSGSLEDASLVFDEITRKGIDDVISWNSIVAAHVKGSNPRTALDLFSEM--------T 245

Query: 302 AMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKT 361
            ++     NE            R+  +  +N     +  A  +   +   ++IH   ++ 
Sbjct: 246 TIVHEKATNE------------RSDIISIVN-----ILPACASLKALPQTKEIHSYAIRN 288

Query: 362 ESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFS------------ 409
            + +D  + N LI  YAKCG + +A N+F+ M  +D+VSWN+MV G++            
Sbjct: 289 GTFADAFVCNALIDTYAKCGSMKDAVNVFNVMEFKDVVSWNAMVTGYTQSGKFGAAFELF 348

Query: 410 -----------------------HHGLANETLKVFESMLESGTHPNSVTFLGILSACSHA 446
                                    G   E L  F+ M+  G+ PNSVT + +LSAC+  
Sbjct: 349 KNMRKENIPLDVITWSAVIAGYAQRGYGQEALDTFQQMILYGSEPNSVTIISLLSACASL 408

Query: 447 GLVSRGWE 454
           G +S+G E
Sbjct: 409 GALSQGME 416



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 56/252 (22%), Positives = 110/252 (43%), Gaps = 19/252 (7%)

Query: 270 TSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVP 329
           T ++  YL+ G  S+A  +   +    AV W  ++   ++      A  +   M   G  
Sbjct: 87  TGVVASYLACGATSDALSVLERVVPSPAVWWNLLVRAHIEEGRLDRAIGVSCRMLRAGTK 146

Query: 330 PLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNI 389
           P + T      A G   +   G   H ++     ES++ + N L++MY++ G +++A  +
Sbjct: 147 PDHFTLPYALKACGELPSYRSGSAFHGLICCNGFESNVFVCNALVAMYSRSGSLEDASLV 206

Query: 390 FSNMVSR---DLVSWNSMVMGFSHHGLANETLKVFESML----ESGTHPNS--VTFLGIL 440
           F  +  +   D++SWNS+V            L +F  M     E  T+  S  ++ + IL
Sbjct: 207 FDEITRKGIDDVISWNSIVAAHVKGSNPRTALDLFSEMTTIVHEKATNERSDIISIVNIL 266

Query: 441 SACSHAGLVSRGWELFNAMFDVYKIQPG--PEHYV--SMINLLGRAGKIKEAEEFVLRLP 496
            AC+    + +  E+ +     Y I+ G   + +V  ++I+   + G +K+A      + 
Sbjct: 267 PACASLKALPQTKEIHS-----YAIRNGTFADAFVCNALIDTYAKCGSMKDAVNVFNVME 321

Query: 497 FEPDHRIWGALL 508
           F+ D   W A++
Sbjct: 322 FK-DVVSWNAMV 332



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 43/153 (28%), Positives = 82/153 (53%), Gaps = 12/153 (7%)

Query: 4   RNHPKSLVVHLTSS--ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEA 61
           R+H     V+  ++  I  YSK G +D A+ +F  MP+RN VS+ +M+SG+  +GR  EA
Sbjct: 540 RHHEYESSVYFVANCLIDMYSKCGDVDTARNVFDSMPKRNEVSWTSMMSGYGMHGRGKEA 599

Query: 62  RRLFEEMPERNVV----SWTAMICGLADAGRVCEARKLFEEM-PERNVVS----WNSMVV 112
             +F++M +   V    S+  ++   + +G V +    F+ M  +  V++    +  ++ 
Sbjct: 600 LDIFDKMQKAGFVPDDISFLVLLYACSHSGMVDQGLDYFDIMRSDYGVIASAQHYACVID 659

Query: 113 GLIRNGELNEARKVFNSMPIK-NVISWNAMIAG 144
            L R+G L++A K    MP++ +   W A+++ 
Sbjct: 660 LLARSGRLDKAWKTIQEMPMEPSAAIWVALLSA 692


>gi|297737154|emb|CBI26355.3| unnamed protein product [Vitis vinifera]
          Length = 550

 Score =  286 bits (733), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 167/507 (32%), Positives = 259/507 (51%), Gaps = 48/507 (9%)

Query: 92  ARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMM 151
           A K+F+E+ + N   W S++ G + N + +EA  +F  M  + +   N  I+  ++    
Sbjct: 54  AHKVFDEITQPNAYLWTSLIHGYVENRQYDEAFSLFIQMRREPISVLNFTISSVLKALAR 113

Query: 152 ------GEAI--VLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAM 203
                 G+A+    F+EM E+++V+W  MISGY     V+     F RMP +NVVSWT  
Sbjct: 114 LTRFKGGQAVYGFAFDEMCEKDIVSWNMMISGYGNNDRVDIARKFFDRMPERNVVSWT-- 171

Query: 204 IGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPV 263
                                               SMI GY++ G + EAQ LFD++PV
Sbjct: 172 ------------------------------------SMICGYVKAGDMAEAQVLFDSMPV 195

Query: 264 RDEISWTSMIDGYLSVGQVSN-AYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFME 322
           +D  SW  M+ GY+ +G  +N A  LF  MP ++ V W+ MI G  +N   ++A  LF  
Sbjct: 196 KDLASWNVMVSGYMDIGDYTNGARCLFDQMPMKNLVTWSTMIGGYARNGQPLKALELFER 255

Query: 323 MRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGV 382
            +   + P       +  A      ID    I    +     SDL +   LI MYAKCG 
Sbjct: 256 FKEQDIKPDETFILGIISACSQLGIIDAAESIIHNYVGPSLLSDLRVFTSLIDMYAKCGS 315

Query: 383 IDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSA 442
           I+ A  +F     +DL+ +++M+   ++HGL  + + +F+ M  +   P+SVTFLG+L+A
Sbjct: 316 IEKALQMFEMAHPKDLLCYSTMIAALANHGLGRDAIFLFDKMQRANIKPDSVTFLGVLTA 375

Query: 443 CSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHR 502
           C+H GLV  G + F  M + + IQP  +HY  +++LLGR G ++EA   +  +P  P   
Sbjct: 376 CNHGGLVDEGRKYFKQMTEEFGIQPSEKHYACVVDLLGRVGCLEEAYNLIRNMPIAPHSV 435

Query: 503 IWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDM 562
           +WGALL AC     N ++AE AA  L +++P N+  +++L NIYAA+GR     K+R  +
Sbjct: 436 VWGALLAACR-VHCNVQLAEVAAAELFKIEPDNSGNYILLSNIYAAAGRWGSVAKVRAKI 494

Query: 563 GLKGVRKVPGCSWLMRNGGIQMFLSGD 589
               VRK  G SW+  +  +  F+ GD
Sbjct: 495 REHRVRKNRGSSWIELSHVVHEFVMGD 521



 Score =  171 bits (434), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 121/415 (29%), Positives = 204/415 (49%), Gaps = 55/415 (13%)

Query: 15  TSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQN-GRLSEARR-------LFE 66
           TS I  Y +    DEA +LF  M +  +   N  +S  L+   RL+  +         F+
Sbjct: 70  TSLIHGYVENRQYDEAFSLFIQMRREPISVLNFTISSVLKALARLTRFKGGQAVYGFAFD 129

Query: 67  EMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKV 126
           EM E+++VSW  MI G  +  RV  ARK F+ MPERNVVSW SM+ G ++ G++ EA+ +
Sbjct: 130 EMCEKDIVSWNMMISGYGNNDRVDIARKFFDRMPERNVVSWTSMICGYVKAGDMAEAQVL 189

Query: 127 FNSMPIKNVISWNAMIAGYVECCMMGE----AIVLFEEMEERNVVTWTSMISGYCRAGEV 182
           F+SMP+K++ SWN M++GY++   +G+    A  LF++M  +N+VTW++MI GY R G+ 
Sbjct: 190 FDSMPVKDLASWNVMVSGYMD---IGDYTNGARCLFDQMPMKNLVTWSTMIGGYARNGQP 246

Query: 183 EEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMI 242
            +   LF R   +++      I G          ++      GI D        +  S+I
Sbjct: 247 LKALELFERFKEQDIKPDETFILG----------IISACSQLGIID--------AAESII 288

Query: 243 NGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTA 302
           + Y+    L + +             +TS+ID Y   G +  A  +F     +D + ++ 
Sbjct: 289 HNYVGPSLLSDLR------------VFTSLIDMYAKCGSIEKALQMFEMAHPKDLLCYST 336

Query: 303 MISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTE 362
           MI+ L  + L  +A +LF +M+   + P + TF  +  A      +D GR+      K  
Sbjct: 337 MIAALANHGLGRDAIFLFDKMQRANIKPDSVTFLGVLTACNHGGLVDEGRK----YFKQM 392

Query: 363 SESDLILEN-----CLISMYAKCGVIDNAYNIFSNM-VSRDLVSWNSMVMGFSHH 411
           +E   I  +     C++ +  + G ++ AYN+  NM ++   V W +++     H
Sbjct: 393 TEEFGIQPSEKHYACVVDLLGRVGCLEEAYNLIRNMPIAPHSVVWGALLAACRVH 447



 Score =  108 bits (270), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 77/276 (27%), Positives = 144/276 (52%), Gaps = 20/276 (7%)

Query: 1   MSERNHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSE 60
           M ERN     VV  TS I  Y K G + EA+ LF  MP +++ S+N M+SG++  G  + 
Sbjct: 162 MPERN-----VVSWTSMICGYVKAGDMAEAQVLFDSMPVKDLASWNVMVSGYMDIGDYTN 216

Query: 61  -ARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLI---- 115
            AR LF++MP +N+V+W+ MI G A  G+  +A +LFE   E+++    + ++G+I    
Sbjct: 217 GARCLFDQMPMKNLVTWSTMIGGYARNGQPLKALELFERFKEQDIKPDETFILGIISACS 276

Query: 116 RNGELNEARKVFNSMPIKNVIS----WNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTS 171
           + G ++ A  + ++    +++S    + ++I  Y +C  + +A+ +FE    ++++ +++
Sbjct: 277 QLGIIDAAESIIHNYVGPSLLSDLRVFTSLIDMYAKCGSIEKALQMFEMAHPKDLLCYST 336

Query: 172 MISGYCRAGEVEEGYCLFRRMPRKNV----VSWTAMIGGFAWNGFHKESLLLFIEMKGIC 227
           MI+     G   +   LF +M R N+    V++  ++      G   E    F +M    
Sbjct: 337 MIAALANHGLGRDAIFLFDKMQRANIKPDSVTFLGVLTACNHGGLVDEGRKYFKQMTE-- 394

Query: 228 DNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPV 263
           + G   + +    +++   R G LEEA NL   +P+
Sbjct: 395 EFGIQPSEKHYACVVDLLGRVGCLEEAYNLIRNMPI 430


>gi|449457327|ref|XP_004146400.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49710-like [Cucumis sativus]
          Length = 720

 Score =  286 bits (733), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 178/558 (31%), Positives = 298/558 (53%), Gaps = 22/558 (3%)

Query: 57  RLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIR 116
           RLS ARR+F+   + NV S+  +I   A    V  A +LF+EMP+ + VS+N+++    R
Sbjct: 58  RLSAARRVFDHTHDCNVFSFNTLISAYAKESYVEVAHQLFDEMPQPDSVSYNTLIAAYAR 117

Query: 117 NGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTW------- 169
            G+   A ++F  M    +      ++G +  C  G  + L  ++   +VVT        
Sbjct: 118 RGDTQPAFQLFLEMREAFLDMDGFTLSGIITAC--GINVGLIRQLHALSVVTGLDSYVSV 175

Query: 170 -TSMISGYCRAGEVEEGYCLFRRMPR-KNVVSWTAMIGGFAWNGFHKESLLLFIEMKGIC 227
             ++I+ Y + G ++E   +F  +   ++ VSW +M+  +  +    ++L L++EM    
Sbjct: 176 GNALITSYSKNGFLKEARRIFHWLSEDRDEVSWNSMVVAYMQHREGSKALELYLEMTV-- 233

Query: 228 DNGNNCNVQSCNSMINGYIR----FGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQ-V 282
             G   ++ +  S++  +       G L+    L  +   ++    + +ID Y   G  +
Sbjct: 234 -RGLIVDIFTLASVLTAFTNVQDLLGGLQFHAKLIKSGYHQNSHVGSGLIDLYSKCGGCM 292

Query: 283 SNAYYLFHNMPDRDAVAWTAMISGL-VQNELFVEATYLFMEMRAHGVPPLNATFSVLFGA 341
            +   +F  + + D V W  MISG  +  +L  EA   F +++  G  P + +   +  A
Sbjct: 293 LDCRKVFDEISNPDLVLWNTMISGYSLYEDLSDEALECFRQLQVVGHRPDDCSLVCVISA 352

Query: 342 AGATANIDLGRQIHCVLMKTESESDLI-LENCLISMYAKCGVIDNAYNIFSNMVSRDLVS 400
               ++   GRQ+H + +K +  S+ I + N LI+MY+KCG + +A  +F  M   + VS
Sbjct: 353 CSNMSSPSQGRQVHGLALKLDIPSNRISVNNALIAMYSKCGNLRDAKTLFDTMPEHNTVS 412

Query: 401 WNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMF 460
           +NSM+ G++ HG+  ++L +F+ MLE G  P ++TF+ +L+AC+H G V  G   FN M 
Sbjct: 413 YNSMIAGYAQHGMGFQSLHLFQRMLEMGFTPTNITFISVLAACAHTGRVEDGKIYFNMMK 472

Query: 461 DVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEI 520
             + I+P   H+  MI+LLGRAGK+ EAE  +  +PF+P    W ALLGAC    GN E+
Sbjct: 473 QKFGIEPEAGHFSCMIDLLGRAGKLSEAERLIETIPFDPGFFFWSALLGACRI-HGNVEL 531

Query: 521 AEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNG 580
           A  AA RLL+LDPLNA  +V+L NIY+ +GR  +   +R  M  +GV+K PGCSW+  N 
Sbjct: 532 AIKAANRLLQLDPLNAAPYVMLANIYSDNGRLQDAASVRKLMRDRGVKKKPGCSWIEVNR 591

Query: 581 GIQMFLSGDKIPAQVAEI 598
            I +F++ D     + +I
Sbjct: 592 RIHIFVAEDTFHPMIKKI 609



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 107/460 (23%), Positives = 220/460 (47%), Gaps = 25/460 (5%)

Query: 115 IRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMIS 174
           +R G+   A  + + +P    +S N  +  Y +C  +  A  +F+   + NV ++ ++IS
Sbjct: 24  LRTGKSLHALYIKSFVPTSTYLS-NHFLLLYSKCRRLSAARRVFDHTHDCNVFSFNTLIS 82

Query: 175 GYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCN 234
            Y +   VE  + LF  MP+ + VS+  +I  +A  G  + +  LF+EM+    + +   
Sbjct: 83  AYAKESYVEVAHQLFDEMPQPDSVSYNTLIAAYARRGDTQPAFQLFLEMREAFLDMDGFT 142

Query: 235 VQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEIS-WTSMIDGYLSVGQVSNAYYLFHNMP 293
           +    +     I  G + +   L     +   +S   ++I  Y   G +  A  +FH + 
Sbjct: 143 LSGIITACG--INVGLIRQLHALSVVTGLDSYVSVGNALITSYSKNGFLKEARRIFHWLS 200

Query: 294 D-RDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGR 352
           + RD V+W +M+   +Q+    +A  L++EM   G+     T + +  A     ++  G 
Sbjct: 201 EDRDEVSWNSMVVAYMQHREGSKALELYLEMTVRGLIVDIFTLASVLTAFTNVQDLLGGL 260

Query: 353 QIHCVLMKTESESDLILENCLISMYAKC-GVIDNAYNIFSNMVSRDLVSWNSMVMGFS-H 410
           Q H  L+K+    +  + + LI +Y+KC G + +   +F  + + DLV WN+M+ G+S +
Sbjct: 261 QFHAKLIKSGYHQNSHVGSGLIDLYSKCGGCMLDCRKVFDEISNPDLVLWNTMISGYSLY 320

Query: 411 HGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPE 470
             L++E L+ F  +   G  P+  + + ++SACS+    S+G ++      +      P 
Sbjct: 321 EDLSDEALECFRQLQVVGHRPDDCSLVCVISACSNMSSPSQGRQVHGLALKL----DIPS 376

Query: 471 HYVS----MINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCE-GNAEIAEHAA 525
           + +S    +I +  + G +++A+     +P E +   + +++   G+ + G    + H  
Sbjct: 377 NRISVNNALIAMYSKCGNLRDAKTLFDTMP-EHNTVSYNSMIA--GYAQHGMGFQSLHLF 433

Query: 526 KRLLELDPLNAPAHVVLCNIYAA---SGRHVEEHKLRMDM 562
           +R+LE+     P ++   ++ AA   +GR VE+ K+  +M
Sbjct: 434 QRMLEMG--FTPTNITFISVLAACAHTGR-VEDGKIYFNM 470



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 105/501 (20%), Positives = 204/501 (40%), Gaps = 118/501 (23%)

Query: 11  VVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPE 70
           V    + I+ Y+K  +++ A  LF  MPQ + VSYN +++ + + G    A +LF EM E
Sbjct: 74  VFSFNTLISAYAKESYVEVAHQLFDEMPQPDSVSYNTLIAAYARRGDTQPAFQLFLEMRE 133

Query: 71  RNV------VSWTAMICGLADAGRVCEARKLFEEMPERNVVS-WNSMVVGLIRNGELNEA 123
             +      +S     CG+ + G + +   L       + VS  N+++    +NG L EA
Sbjct: 134 AFLDMDGFTLSGIITACGI-NVGLIRQLHALSVVTGLDSYVSVGNALITSYSKNGFLKEA 192

Query: 124 RKVFNSMP-IKNVISWNAMIAGYVECCMMGEAIVLFEEMEER----NVVTWTSMISGYC- 177
           R++F+ +   ++ +SWN+M+  Y++     +A+ L+ EM  R    ++ T  S+++ +  
Sbjct: 193 RRIFHWLSEDRDEVSWNSMVVAYMQHREGSKALELYLEMTVRGLIVDIFTLASVLTAFTN 252

Query: 178 ----------RAGEVEEGY-------------------CL------FRRMPRKNVVSWTA 202
                      A  ++ GY                   C+      F  +   ++V W  
Sbjct: 253 VQDLLGGLQFHAKLIKSGYHQNSHVGSGLIDLYSKCGGCMLDCRKVFDEISNPDLVLWNT 312

Query: 203 MIGGFA-WNGFHKESLLLFIEMKGICDNGNNCN----VQSC------------------- 238
           MI G++ +     E+L  F +++ +    ++C+    + +C                   
Sbjct: 313 MISGYSLYEDLSDEALECFRQLQVVGHRPDDCSLVCVISACSNMSSPSQGRQVHGLALKL 372

Query: 239 ----------NSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYL 288
                     N++I  Y + G L +A+ LFDT+P  + +S+ SMI GY            
Sbjct: 373 DIPSNRISVNNALIAMYSKCGNLRDAKTLFDTMPEHNTVSYNSMIAGY------------ 420

Query: 289 FHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANI 348
                               Q+ +  ++ +LF  M   G  P N TF  +  A   T  +
Sbjct: 421 -------------------AQHGMGFQSLHLFQRMLEMGFTPTNITFISVLAACAHTGRV 461

Query: 349 DLGRQIHCVLMKTES--ESDLILENCLISMYAKCGVIDNAYNIFSNM-VSRDLVSWNSMV 405
           + G+ I+  +MK +   E +    +C+I +  + G +  A  +   +        W++++
Sbjct: 462 EDGK-IYFNMMKQKFGIEPEAGHFSCMIDLLGRAGKLSEAERLIETIPFDPGFFFWSALL 520

Query: 406 MGFSHHGLANETLKVFESMLE 426
                HG     +K    +L+
Sbjct: 521 GACRIHGNVELAIKAANRLLQ 541



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 50/195 (25%), Positives = 97/195 (49%), Gaps = 17/195 (8%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNV---- 73
           I  YSK G + +AK LF  MP+ N VSYN+M++G+ Q+G   ++  LF+ M E       
Sbjct: 386 IAMYSKCGNLRDAKTLFDTMPEHNTVSYNSMIAGYAQHGMGFQSLHLFQRMLEMGFTPTN 445

Query: 74  VSWTAMICGLADAGRVCEARKLFEEMPERNVVS-----WNSMVVGLIRNGELNEARKVFN 128
           +++ +++   A  GRV + +  F  M ++  +      ++ M+  L R G+L+EA ++  
Sbjct: 446 ITFISVLAACAHTGRVEDGKIYFNMMKQKFGIEPEAGHFSCMIDLLGRAGKLSEAERLIE 505

Query: 129 SMPIK-NVISWNAM-----IAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEV 182
           ++P       W+A+     I G VE  +     +L  +++  N   +  + + Y   G +
Sbjct: 506 TIPFDPGFFFWSALLGACRIHGNVELAIKAANRLL--QLDPLNAAPYVMLANIYSDNGRL 563

Query: 183 EEGYCLFRRMPRKNV 197
           ++   + + M  + V
Sbjct: 564 QDAASVRKLMRDRGV 578



 Score = 46.6 bits (109), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 45/221 (20%), Positives = 84/221 (38%), Gaps = 44/221 (19%)

Query: 326 HGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKC----- 380
           H    L   F        A  ++  G+ +H + +K+   +   L N  + +Y+KC     
Sbjct: 2   HHFSSLLHNFRQFLKTCIAHRDLRTGKSLHALYIKSFVPTSTYLSNHFLLLYSKCRRLSA 61

Query: 381 --------------------------GVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLA 414
                                       ++ A+ +F  M   D VS+N+++  ++  G  
Sbjct: 62  ARRVFDHTHDCNVFSFNTLISAYAKESYVEVAHQLFDEMPQPDSVSYNTLIAAYARRGDT 121

Query: 415 NETLKVFESMLESGTHPNSVTFLGILSACS-HAGLVSRGWELFNAMFDVYKIQPGPEHYV 473
               ++F  M E+    +  T  GI++AC  + GL+ +   L         +  G + YV
Sbjct: 122 QPAFQLFLEMREAFLDMDGFTLSGIITACGINVGLIRQLHAL--------SVVTGLDSYV 173

Query: 474 SMINLL----GRAGKIKEAEEFVLRLPFEPDHRIWGALLGA 510
           S+ N L     + G +KEA      L  + D   W +++ A
Sbjct: 174 SVGNALITSYSKNGFLKEARRIFHWLSEDRDEVSWNSMVVA 214


>gi|255576950|ref|XP_002529360.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223531180|gb|EEF33027.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 683

 Score =  286 bits (733), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 183/585 (31%), Positives = 305/585 (52%), Gaps = 25/585 (4%)

Query: 33  LFQLMPQRNVVSYNAMLSGFLQ--NGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVC 90
           +F++   +++VS N +++      NG L+ A ++F+ +    ++ +  +I   A  G   
Sbjct: 60  IFRVGLHQDIVSLNKLMAFCTDPFNGNLNYAEKMFKYIRYPCLLIYNLIIKAFAKKGNYK 119

Query: 91  EARKLFEEM------PERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISW-----N 139
               LF ++      P+     +    +G +  GE+++A K+   +  K  + +     N
Sbjct: 120 RTLVLFSKLREDGLWPDNFTYPFVFKAIGYL--GEVSKAEKL-RGLVTKTGLEFDTYVRN 176

Query: 140 AMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVV- 198
           ++I  Y +  +     +LF+EM +R+V++W  MISGY +    E+   +F RM  ++ + 
Sbjct: 177 SLIDMYAQLALTDVMKMLFDEMPDRDVISWNVMISGYVKCRRFEDAINVFCRMQEESGLM 236

Query: 199 --SWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQN 256
               T +    A     +  L   I    + DN     +   N++++ Y + G L  A+ 
Sbjct: 237 PDEATVVSTLSACTALKRLELGKKIH-HYVRDNVKFTPIIG-NALLDMYCKCGCLSIARA 294

Query: 257 LFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEA 316
           +F+ +P ++ I WT+M+ GY + G++  A  LF   P RD V WTAMI+G VQ   F EA
Sbjct: 295 VFEEMPSKNVICWTTMVSGYANCGELEEARELFEGSPIRDVVIWTAMINGYVQFNRFDEA 354

Query: 317 TYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISM 376
             LF EM+   V P       L      T  I+ G+ IH  + +     D ++   LI M
Sbjct: 355 VALFREMQIRKVKPDKFIVVSLLTGCAQTGAIEQGKWIHEFIDENRIPIDAVVGTALIEM 414

Query: 377 YAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTF 436
           YAKCG I+ A  IF  +  +D  SW S++ G + +G  ++ L++F  M ++G  P+ +TF
Sbjct: 415 YAKCGFIEKALEIFYGLRVKDTASWTSIICGLAMNGKTSKALELFSKMKQAGVRPDDITF 474

Query: 437 LGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLP 496
           +G+LSACSH GLV  G + FN+M   Y+I+P  EHY  +++LLGRAG + EAEE + ++P
Sbjct: 475 IGVLSACSHGGLVEEGRKFFNSMRMEYQIKPKVEHYGCLVDLLGRAGLLNEAEELIKKIP 534

Query: 497 FEPDH---RIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHV 553
            E       ++G+LL AC    GN E+ E  AK+L++ +  ++  H +L NIYA + R  
Sbjct: 535 DENKAITVPLYGSLLSACRI-YGNVEMGERVAKQLVKFESSDSSVHTLLANIYAFADRWE 593

Query: 554 EEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
           +  K+R  M   GV+K PGCS +  +  I  F SG     ++ EI
Sbjct: 594 DVTKVRRKMKDLGVKKTPGCSSIEVDSIIHEFFSGHPSHPEMREI 638



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 118/421 (28%), Positives = 190/421 (45%), Gaps = 68/421 (16%)

Query: 16  SSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPE----- 70
           S I  Y++    D  K LF  MP R+V+S+N M+SG+++  R  +A  +F  M E     
Sbjct: 177 SLIDMYAQLALTDVMKMLFDEMPDRDVISWNVMISGYVKCRRFEDAINVFCRMQEESGLM 236

Query: 71  -----------------------------RNVVSWTAMICGLADAGRVCE------ARKL 95
                                        R+ V +T +I G A     C+      AR +
Sbjct: 237 PDEATVVSTLSACTALKRLELGKKIHHYVRDNVKFTPII-GNALLDMYCKCGCLSIARAV 295

Query: 96  FEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAI 155
           FEEMP +NV+ W +MV G    GEL EAR++F   PI++V+ W AMI GYV+     EA+
Sbjct: 296 FEEMPSKNVICWTTMVSGYANCGELEEARELFEGSPIRDVVIWTAMINGYVQFNRFDEAV 355

Query: 156 VLFEEMEERNV----VTWTSMISGYCRAGEVEEGYCLFR-----RMPRKNVVSWTAMIGG 206
            LF EM+ R V        S+++G  + G +E+G  +       R+P   VV  TA+I  
Sbjct: 356 ALFREMQIRKVKPDKFIVVSLLTGCAQTGAIEQGKWIHEFIDENRIPIDAVVG-TALIEM 414

Query: 207 FAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVP---V 263
           +A  GF +++L +F  ++ + D        S  S+I G    G+  +A  LF  +    V
Sbjct: 415 YAKCGFIEKALEIFYGLR-VKDTA------SWTSIICGLAMNGKTSKALELFSKMKQAGV 467

Query: 264 R-DEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVA-----WTAMISGLVQNELFVEAT 317
           R D+I++  ++      G V      F++M     +      +  ++  L +  L  EA 
Sbjct: 468 RPDDITFIGVLSACSHGGLVEEGRKFFNSMRMEYQIKPKVEHYGCLVDLLGRAGLLNEAE 527

Query: 318 YLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMY 377
            L  ++           +  L  A     N+++G ++   L+K ES SD  +   L ++Y
Sbjct: 528 ELIKKIPDENKAITVPLYGSLLSACRIYGNVEMGERVAKQLVKFES-SDSSVHTLLANIY 586

Query: 378 A 378
           A
Sbjct: 587 A 587



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 106/456 (23%), Positives = 192/456 (42%), Gaps = 94/456 (20%)

Query: 25  GFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNV----VSWTAMI 80
           G ++ A+ +F+ +    ++ YN ++  F + G       LF ++ E  +     ++  + 
Sbjct: 85  GNLNYAEKMFKYIRYPCLLIYNLIIKAFAKKGNYKRTLVLFSKLREDGLWPDNFTYPFVF 144

Query: 81  CGLADAGRVCEARKL----FEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVI 136
             +   G V +A KL     +   E +    NS++    +    +  + +F+ MP ++VI
Sbjct: 145 KAIGYLGEVSKAEKLRGLVTKTGLEFDTYVRNSLIDMYAQLALTDVMKMLFDEMPDRDVI 204

Query: 137 SWNAMIAGYVECCMMGEAIVLFEEMEE--------------------------------- 163
           SWN MI+GYV+C    +AI +F  M+E                                 
Sbjct: 205 SWNVMISGYVKCRRFEDAINVFCRMQEESGLMPDEATVVSTLSACTALKRLELGKKIHHY 264

Query: 164 -RNVVTWTSMISG-----YCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESL 217
            R+ V +T +I       YC+ G +     +F  MP KNV+ WT M+ G+A  G  +E+ 
Sbjct: 265 VRDNVKFTPIIGNALLDMYCKCGCLSIARAVFEEMPSKNVICWTTMVSGYANCGELEEAR 324

Query: 218 LLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVR------------- 264
            LF E   I D      V    +MINGY++F R +EA  LF  + +R             
Sbjct: 325 ELF-EGSPIRD------VVIWTAMINGYVQFNRFDEAVALFREMQIRKVKPDKFIVVSLL 377

Query: 265 --------------------------DEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAV 298
                                     D +  T++I+ Y   G +  A  +F+ +  +D  
Sbjct: 378 TGCAQTGAIEQGKWIHEFIDENRIPIDAVVGTALIEMYAKCGFIEKALEIFYGLRVKDTA 437

Query: 299 AWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQ-IHCV 357
           +WT++I GL  N    +A  LF +M+  GV P + TF  +  A      ++ GR+  + +
Sbjct: 438 SWTSIICGLAMNGKTSKALELFSKMKQAGVRPDDITFIGVLSACSHGGLVEEGRKFFNSM 497

Query: 358 LMKTESESDLILENCLISMYAKCGVIDNAYNIFSNM 393
            M+ + +  +    CL+ +  + G+++ A  +   +
Sbjct: 498 RMEYQIKPKVEHYGCLVDLLGRAGLLNEAEELIKKI 533



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 58/201 (28%), Positives = 104/201 (51%), Gaps = 18/201 (8%)

Query: 7   PKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFE 66
           P   V+  T+ ++ Y+  G ++EA+ LF+  P R+VV + AM++G++Q  R  EA  LF 
Sbjct: 300 PSKNVICWTTMVSGYANCGELEEARELFEGSPIRDVVIWTAMINGYVQFNRFDEAVALFR 359

Query: 67  EM------PERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMV-VGLI---- 115
           EM      P++ +V   +++ G A  G + E  K   E  + N +  +++V   LI    
Sbjct: 360 EMQIRKVKPDKFIV--VSLLTGCAQTGAI-EQGKWIHEFIDENRIPIDAVVGTALIEMYA 416

Query: 116 RNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNV----VTWTS 171
           + G + +A ++F  + +K+  SW ++I G        +A+ LF +M++  V    +T+  
Sbjct: 417 KCGFIEKALEIFYGLRVKDTASWTSIICGLAMNGKTSKALELFSKMKQAGVRPDDITFIG 476

Query: 172 MISGYCRAGEVEEGYCLFRRM 192
           ++S     G VEEG   F  M
Sbjct: 477 VLSACSHGGLVEEGRKFFNSM 497


>gi|224080297|ref|XP_002306087.1| predicted protein [Populus trichocarpa]
 gi|222849051|gb|EEE86598.1| predicted protein [Populus trichocarpa]
          Length = 677

 Score =  286 bits (733), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 198/647 (30%), Positives = 323/647 (49%), Gaps = 76/647 (11%)

Query: 11  VVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPE 70
           +VHL      YSK   I+EA+ LF  MPQRN  S+N ++S  +++  L++A+ +F+    
Sbjct: 29  LVHL------YSKHCLINEAQKLFDEMPQRNTYSWNTIISAHIKSQNLAQAKSIFDSASV 82

Query: 71  RNVVSWTAMICGLADA-GRVCEARKLFEEM-PERNVVSWNSMVVGLIRNGELNEARKVFN 128
           R++V++ +M+ G     G    A +LF EM  +RN +  + + +       +N   K+ N
Sbjct: 83  RDLVTYNSMLSGYVSVDGYERNALELFVEMQSKRNEIEIDDLTI----TSMVNLFSKLCN 138

Query: 129 SMPIKNVISW-------------NAMIAGYVECCMMGEAIVLFEEMEER---NVVTWTSM 172
           S   + + S+             +++I  Y +C    EA  +F+  E     ++V+  +M
Sbjct: 139 SCYGRQLHSYMVKTGNDRSGFVVSSLIDMYSKCGCFKEACQVFKGCEREGGFDLVSKNAM 198

Query: 173 ISGYCRAGEVEEGYCLFRRMPRKN-VVSWTAMIGGFAWNGFHKESLLLFI---------- 221
           ++ YCR G++E    LF R    N  VSW  +I G+  NG+  E+L LF+          
Sbjct: 199 VAAYCREGDMEMALRLFWRESELNDSVSWNTLISGYVQNGYPVEALKLFVCMGENGVKWN 258

Query: 222 ---------------------EMKG-ICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFD 259
                                EM   I  NG   +    + +++ Y + G ++ A++L  
Sbjct: 259 EHTFGSVLSACADLRNLKIGKEMHAWILKNGLGSSAFVESGIVDVYCKCGNMKYAESLHL 318

Query: 260 TVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLV---QNELFVEA 316
           T  VR   S TSMI GY S G +  A  LF ++ +++++ W A+ SG V   Q E F E 
Sbjct: 319 TRGVRSSFSITSMIVGYSSQGNMVEACRLFDSLEEKNSIVWAALFSGYVKLKQCEAFFEL 378

Query: 317 TYLFMEMRAHGVPP----LNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENC 372
              ++   A  +P     +NA     F      A +  G+QIH  + +   E D+     
Sbjct: 379 LREYIAKEA-AIPDALILINA-----FNVCAFQAALGPGKQIHGYVFRMGIEMDMKTTTA 432

Query: 373 LISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPN 432
           +I MY+KCG I  A  +F  ++ RDLV +N M+ G++HHG   + + +F+ MLE G  P+
Sbjct: 433 MIDMYSKCGSIPYAEKLFLKVIERDLVLYNVMLAGYAHHGHEIKAINLFQEMLERGVGPD 492

Query: 433 SVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFV 492
           +VTF+ +LSAC H GLV  G + F +M + Y I P  +HY  MI+L GRA ++++   F+
Sbjct: 493 AVTFVALLSACRHRGLVDLGEKTFYSMTEDYHILPETDHYACMIDLYGRASQLEKMVLFM 552

Query: 493 LRLPFE-PDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGR 551
            R+P E  D  + GA   AC     N E+A+ A ++LL ++  +   +V L N+YAA G 
Sbjct: 553 QRIPVEHQDAAVVGAFFNACRL-NNNTELAKEAEEKLLNIEGDSGARYVQLANVYAAEGN 611

Query: 552 HVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
             E  ++  +M  K  +K  GCSW+  +  +  F SGD+   +   I
Sbjct: 612 WAEMGRISREMRGKEAKKFAGCSWVYLDNEVHSFTSGDRTHTKAESI 658



 Score =  132 bits (331), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 122/484 (25%), Positives = 220/484 (45%), Gaps = 37/484 (7%)

Query: 104 VVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEE 163
           +++ N +V    ++  +NEA+K+F+ MP +N  SWN +I+ +++   + +A  +F+    
Sbjct: 23  ILTSNQLVHLYSKHCLINEAQKLFDEMPQRNTYSWNTIISAHIKSQNLAQAKSIFDSASV 82

Query: 164 RNVVTWTSMISGYCRAGEVEEGYC-LFRRMPRK------NVVSWTAMIGGFA--WNGFHK 214
           R++VT+ SM+SGY      E     LF  M  K      + ++ T+M+  F+   N  + 
Sbjct: 83  RDLVTYNSMLSGYVSVDGYERNALELFVEMQSKRNEIEIDDLTITSMVNLFSKLCNSCYG 142

Query: 215 ESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVR---DEISWTS 271
             L  +     +   GN+ +    +S+I+ Y + G  +EA  +F         D +S  +
Sbjct: 143 RQLHSY-----MVKTGNDRSGFVVSSLIDMYSKCGCFKEACQVFKGCEREGGFDLVSKNA 197

Query: 272 MIDGYLSVGQVSNAYYLFHNMPD-RDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPP 330
           M+  Y   G +  A  LF    +  D+V+W  +ISG VQN   VEA  LF+ M  +GV  
Sbjct: 198 MVAAYCREGDMEMALRLFWRESELNDSVSWNTLISGYVQNGYPVEALKLFVCMGENGVKW 257

Query: 331 LNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIF 390
              TF  +  A     N+ +G+++H  ++K    S   +E+ ++ +Y KCG +  A ++ 
Sbjct: 258 NEHTFGSVLSACADLRNLKIGKEMHAWILKNGLGSSAFVESGIVDVYCKCGNMKYAESLH 317

Query: 391 SNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVS 450
                R   S  SM++G+S  G   E  ++F+S+ E     NS+ +  + S         
Sbjct: 318 LTRGVRSSFSITSMIVGYSSQGNMVEACRLFDSLEE----KNSIVWAALFSGYVKLKQCE 373

Query: 451 RGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKI---KEAEEFVLRLPFEPDHRIWGAL 507
             +EL           P     ++  N+      +   K+   +V R+  E D +   A+
Sbjct: 374 AFFELLREYIAKEAAIPDALILINAFNVCAFQAALGPGKQIHGYVFRMGIEMDMKTTTAM 433

Query: 508 LGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNI----YAASGRHVEEHKLRMDMG 563
           +     C G+   AE    +++E D       +VL N+    YA  G  ++   L  +M 
Sbjct: 434 IDMYSKC-GSIPYAEKLFLKVIERD-------LVLYNVMLAGYAHHGHEIKAINLFQEML 485

Query: 564 LKGV 567
            +GV
Sbjct: 486 ERGV 489


>gi|413944077|gb|AFW76726.1| hypothetical protein ZEAMMB73_427029 [Zea mays]
          Length = 646

 Score =  286 bits (732), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 177/545 (32%), Positives = 285/545 (52%), Gaps = 14/545 (2%)

Query: 57  RLSEARRLFEEMPE-RNVVSWTAMICGLADAGRVCEARKLFEE-MPERNVVSWNSMVVGL 114
           RL+ A  +  +  E  N      M+ G   AG+   A  LF   + +R  V   ++V  +
Sbjct: 80  RLAHAAAVLAQCTEGPNAYMLATMMRGFLRAGKPTHALTLFRRVLRDRLAVDARTIVFAV 139

Query: 115 IRNGELNEARKVFNSMPIK------NVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVT 168
                 +   +  + +  K      +V++ NA++  Y    ++ +A  LF+EM +R+VV+
Sbjct: 140 KAAATSSSPTEAIHCVAFKRGFIGQSVLAGNALVHMYTSSMLLPDARKLFDEMADRDVVS 199

Query: 169 WTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEM---KG 225
           WT++I GY R G  +E + +F RM     V W   +   A      +  LL +     + 
Sbjct: 200 WTTLIDGYARGGLPDEAWRVFCRMVVAESV-WPNEVTLVAAASAAGQMGLLGLGRTVHQC 258

Query: 226 ICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNA 285
           I ++G   +V   N++++ + + G +  A+ +FD +P++D  SWTSM+  Y   G + NA
Sbjct: 259 IVESGGRMSVNLENALVDMFGKCGCVAAAKEVFDGMPIKDVYSWTSMVSAYAKCGDLENA 318

Query: 286 YYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGAT 345
             LF  +P+R+ V+W+ M++      +  EA  +F +M A GV P++AT   +  A    
Sbjct: 319 AKLFKEIPNRNVVSWSCMVAAYSHANMPDEAIRIFNDMIAAGVEPIDATLVSVLSACAQL 378

Query: 346 ANIDLGRQIH-CVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSM 404
            ++D+G  ++   ++  + E    L N  I M+AKCG +  A  +FSNM  +++VSWN+M
Sbjct: 379 CSLDVGTWLYDTYIVSHKVELTPNLSNAFIDMFAKCGDVGAASRLFSNMEDKNVVSWNTM 438

Query: 405 VMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYK 464
           +M    HG   E L +F+    +G  P+  T++G+LSACSH GLVS G   F  M  VY 
Sbjct: 439 IMAHGLHGQPEEALHLFQEFKGNGILPDEATYIGVLSACSHGGLVSEGRCHFKEMKIVYG 498

Query: 465 IQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHA 524
           I+P  EHY  MI+LLG+ G ++EA E    +P   D   WGALL AC    GN EI + A
Sbjct: 499 IEPRAEHYACMIDLLGKVGLLQEAFEVARSMPVGADEAGWGALLNACRM-HGNVEIGKCA 557

Query: 525 AKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQM 584
           A +L  LDP ++  +V++  IYA+  +  +   LR  M  + V+K PGCS +  +G    
Sbjct: 558 ADKLAGLDPSDSGIYVLMSQIYASKSKWGQVKMLRTVMRDRRVKKNPGCSSIEVDGKCHE 617

Query: 585 FLSGD 589
           FL  D
Sbjct: 618 FLVAD 622



 Score =  128 bits (322), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 113/433 (26%), Positives = 185/433 (42%), Gaps = 84/433 (19%)

Query: 23  KRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICG 82
           KRGFI +           +V++ NA++  +  +  L +AR+LF+EM +R+VVSWT +I G
Sbjct: 158 KRGFIGQ-----------SVLAGNALVHMYTSSMLLPDARKLFDEMADRDVVSWTTLIDG 206

Query: 83  LADAGRVCEARKLFEEMPERNVVSWNSM-------------VVGLIRN------------ 117
            A  G   EA ++F  M     V  N +             ++GL R             
Sbjct: 207 YARGGLPDEAWRVFCRMVVAESVWPNEVTLVAAASAAGQMGLLGLGRTVHQCIVESGGRM 266

Query: 118 ---------------GELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEME 162
                          G +  A++VF+ MPIK+V SW +M++ Y +C  +  A  LF+E+ 
Sbjct: 267 SVNLENALVDMFGKCGCVAAAKEVFDGMPIKDVYSWTSMVSAYAKCGDLENAAKLFKEIP 326

Query: 163 ERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIE 222
            RNVV+W+ M++ Y  A   +E   +F  M    V    A +                + 
Sbjct: 327 NRNVVSWSCMVAAYSHANMPDEAIRIFNDMIAAGVEPIDATL----------------VS 370

Query: 223 MKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQV 282
           +   C     C++     + + YI   ++E   NL +           + ID +   G V
Sbjct: 371 VLSAC--AQLCSLDVGTWLYDTYIVSHKVELTPNLSN-----------AFIDMFAKCGDV 417

Query: 283 SNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAA 342
             A  LF NM D++ V+W  MI     +    EA +LF E + +G+ P  AT+  +  A 
Sbjct: 418 GAASRLFSNMEDKNVVSWNTMIMAHGLHGQPEEALHLFQEFKGNGILPDEATYIGVLSAC 477

Query: 343 GATANIDLGRQIHCVLMKTESESDLILEN--CLISMYAKCGVIDNAYNIFSNM-VSRDLV 399
                +  GR  H   MK     +   E+  C+I +  K G++  A+ +  +M V  D  
Sbjct: 478 SHGGLVSEGR-CHFKEMKIVYGIEPRAEHYACMIDLLGKVGLLQEAFEVARSMPVGADEA 536

Query: 400 SWNSMVMGFSHHG 412
            W +++     HG
Sbjct: 537 GWGALLNACRMHG 549



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 72/272 (26%), Positives = 134/272 (49%), Gaps = 16/272 (5%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWT 77
           +  + K G +  AK +F  MP ++V S+ +M+S + + G L  A +LF+E+P RNVVSW+
Sbjct: 275 VDMFGKCGCVAAAKEVFDGMPIKDVYSWTSMVSAYAKCGDLENAAKLFKEIPNRNVVSWS 334

Query: 78  AMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRN----GELNEARKVFNSMPIK 133
            M+   + A    EA ++F +M    V   ++ +V ++        L+    ++++  + 
Sbjct: 335 CMVAAYSHANMPDEAIRIFNDMIAAGVEPIDATLVSVLSACAQLCSLDVGTWLYDTYIVS 394

Query: 134 NVISW-----NAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCL 188
           + +       NA I  + +C  +G A  LF  ME++NVV+W +MI  +   G+ EE   L
Sbjct: 395 HKVELTPNLSNAFIDMFAKCGDVGAASRLFSNMEDKNVVSWNTMIMAHGLHGQPEEALHL 454

Query: 189 FRRMPRKNVV----SWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMING 244
           F+      ++    ++  ++   +  G   E    F EMK +   G     +    MI+ 
Sbjct: 455 FQEFKGNGILPDEATYIGVLSACSHGGLVSEGRCHFKEMKIV--YGIEPRAEHYACMIDL 512

Query: 245 YIRFGRLEEAQNLFDTVPV-RDEISWTSMIDG 275
             + G L+EA  +  ++PV  DE  W ++++ 
Sbjct: 513 LGKVGLLQEAFEVARSMPVGADEAGWGALLNA 544



 Score = 78.6 bits (192), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 57/200 (28%), Positives = 95/200 (47%), Gaps = 15/200 (7%)

Query: 7   PKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFE 66
           P   V   TS ++ Y+K G ++ A  LF+ +P RNVVS++ M++ +       EA R+F 
Sbjct: 295 PIKDVYSWTSMVSAYAKCGDLENAAKLFKEIPNRNVVSWSCMVAAYSHANMPDEAIRIFN 354

Query: 67  EMPER----------NVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIR 116
           +M             +V+S  A +C L D G       +     E      N+ +    +
Sbjct: 355 DMIAAGVEPIDATLVSVLSACAQLCSL-DVGTWLYDTYIVSHKVELTPNLSNAFIDMFAK 413

Query: 117 NGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVV----TWTSM 172
            G++  A ++F++M  KNV+SWN MI  +       EA+ LF+E +   ++    T+  +
Sbjct: 414 CGDVGAASRLFSNMEDKNVVSWNTMIMAHGLHGQPEEALHLFQEFKGNGILPDEATYIGV 473

Query: 173 ISGYCRAGEVEEGYCLFRRM 192
           +S     G V EG C F+ M
Sbjct: 474 LSACSHGGLVSEGRCHFKEM 493


>gi|449458783|ref|XP_004147126.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 821

 Score =  286 bits (732), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 185/636 (29%), Positives = 311/636 (48%), Gaps = 57/636 (8%)

Query: 15  TSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNV- 73
           T  ++ +SK G I+EA  +F+ +  +    Y+ ML G+ +N  L  A      M   +V 
Sbjct: 85  TKLVSLFSKYGSINEAARVFEPIDDKLDALYHTMLKGYAKNSSLETALAFLCRMRYDDVK 144

Query: 74  -----VSWTAMICGL-ADAGRVCEAR-KLFEEMPERNVVSWNSMVVGLIRNGELNEARKV 126
                 ++   +CG  AD  R  E   +L       NV +   +V    +  ++++A K+
Sbjct: 145 PVVYNFTYLLKVCGDNADLKRGKEIHGQLITNSFAANVFAMTGVVNMYAKCRQIDDAYKM 204

Query: 127 FNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERN--------------------- 165
           F+ MP ++++SWN +IAG+ +     +A+ L   M++                       
Sbjct: 205 FDRMPERDLVSWNTIIAGFSQNGFAKKALELVLRMQDEGQRPDSITLVTVLPAAADVGLL 264

Query: 166 ------------------VVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGF 207
                             V   T++   Y + G VE    +F  M +K VVSW +M+ G+
Sbjct: 265 MVGKSIHGYAIRAGFAKLVNISTALADMYSKCGSVETARLIFDGMDQKTVVSWNSMMDGY 324

Query: 208 AWNGFHKESLLLFIEM--KGICDNGNNC--NVQSCNSMINGYIRFGRLEEAQNLFDTVPV 263
             NG  ++++ +F +M  +GI   G      + +C  +  G +  G+        D + +
Sbjct: 325 VQNGEPEKAIAVFEKMLEEGIDPTGVTIMEALHACADL--GDLERGKF--VHKFVDQLNL 380

Query: 264 RDEIS-WTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFME 322
             +IS   S+I  Y    +V  A  +F+N+  R  V+W AMI G  QN    EA   F E
Sbjct: 381 GSDISVMNSLISMYSKCKRVDIASDIFNNLNGRTHVSWNAMILGYAQNGRVSEALNCFSE 440

Query: 323 MRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGV 382
           M++ G+ P + T   +  A    +     + IH +++++  + ++ +   L+ MY+KCG 
Sbjct: 441 MKSLGMKPDSFTMVSVIPALAELSVTRHAKWIHGLIIRSCLDKNIFVTTALVDMYSKCGA 500

Query: 383 IDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSA 442
           I  A  +F  +  R +++WN+M+ G+  HGL    L +F+ M +    PN +T+L ++SA
Sbjct: 501 IHMARKLFDMISDRHVITWNAMIDGYGTHGLGRAALDLFDKMKKGAVEPNDITYLSVISA 560

Query: 443 CSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHR 502
           CSH+GLV  G   F +M   Y ++P  +HY +M++LLGRAG+IKEA +F+  +P  P   
Sbjct: 561 CSHSGLVDEGLRHFKSMKQDYGLEPSMDHYGAMVDLLGRAGRIKEAWDFIENMPISPGIT 620

Query: 503 IWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDM 562
           ++GA  GAC     N E+ E AAK+L EL+P     HV+L NIYA++ +  +  ++R  M
Sbjct: 621 VYGAXXGACKI-HKNIEVGEKAAKKLFELNPDEGGYHVLLANIYASTSKWSKVAEVRKTM 679

Query: 563 GLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
             KG++K PGCS +     +  F SG     Q   I
Sbjct: 680 EKKGLKKTPGCSVVELRNEVHSFYSGSTTHPQSKRI 715



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 113/444 (25%), Positives = 187/444 (42%), Gaps = 73/444 (16%)

Query: 11  VVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPE 70
           V  +T  +  Y+K   ID+A  +F  MP+R++VS+N +++GF QNG   +A  L   M +
Sbjct: 182 VFAMTGVVNMYAKCRQIDDAYKMFDRMPERDLVSWNTIIAGFSQNGFAKKALELVLRMQD 241

Query: 71  R----NVVSWTAMICGLADA-----------------------------------GRVCE 91
                + ++   ++   AD                                    G V  
Sbjct: 242 EGQRPDSITLVTVLPAAADVGLLMVGKSIHGYAIRAGFAKLVNISTALADMYSKCGSVET 301

Query: 92  ARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCM- 150
           AR +F+ M ++ VVSWNSM+ G ++NGE  +A  VF  M  + +      I   +  C  
Sbjct: 302 ARLIFDGMDQKTVVSWNSMMDGYVQNGEPEKAIAVFEKMLEEGIDPTGVTIMEALHACAD 361

Query: 151 -----MGEAIVLFEEMEE--RNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAM 203
                 G+ +  F +      ++    S+IS Y +   V+    +F  +  +  VSW AM
Sbjct: 362 LGDLERGKFVHKFVDQLNLGSDISVMNSLISMYSKCKRVDIASDIFNNLNGRTHVSWNAM 421

Query: 204 IGGFAWNGFHKESLLLFIEMKGICDNGNN------------CNVQSCNSMINGYIRFGRL 251
           I G+A NG   E+L  F EMK +    ++             +V      I+G I    L
Sbjct: 422 ILGYAQNGRVSEALNCFSEMKSLGMKPDSFTMVSVIPALAELSVTRHAKWIHGLIIRSCL 481

Query: 252 EEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNE 311
           +  +N+F T         T+++D Y   G +  A  LF  + DR  + W AMI G   + 
Sbjct: 482 D--KNIFVT---------TALVDMYSKCGAIHMARKLFDMISDRHVITWNAMIDGYGTHG 530

Query: 312 LFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTES--ESDLIL 369
           L   A  LF +M+   V P + T+  +  A   +  +D G + H   MK +   E  +  
Sbjct: 531 LGRAALDLFDKMKKGAVEPNDITYLSVISACSHSGLVDEGLR-HFKSMKQDYGLEPSMDH 589

Query: 370 ENCLISMYAKCGVIDNAYNIFSNM 393
              ++ +  + G I  A++   NM
Sbjct: 590 YGAMVDLLGRAGRIKEAWDFIENM 613


>gi|334184919|ref|NP_182060.2| chlororespiratory reduction 4 protein [Arabidopsis thaliana]
 gi|218546767|sp|O22137.2|PP202_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g45350, chloroplastic; AltName: Full=Protein
           CHLORORESPIRATORY REDUCTION 4; Flags: Precursor
 gi|330255448|gb|AEC10542.1| chlororespiratory reduction 4 protein [Arabidopsis thaliana]
          Length = 613

 Score =  286 bits (732), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 159/482 (32%), Positives = 261/482 (54%), Gaps = 46/482 (9%)

Query: 111 VVGL-IRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFE--EMEERNVV 167
           ++GL ++ G L  +R++F+ MP ++ +S+N+MI GYV+C ++  A  LF+   ME +N++
Sbjct: 162 LIGLYLKCGCLGLSRQMFDRMPKRDSVSYNSMIDGYVKCGLIVSARELFDLMPMEMKNLI 221

Query: 168 TWTSMISGYCRAGE-VEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGI 226
           +W SMISGY +  + V+    LF  MP K+++SW                          
Sbjct: 222 SWNSMISGYAQTSDGVDIASKLFADMPEKDLISW-------------------------- 255

Query: 227 CDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAY 286
                       NSMI+GY++ GR+E+A+ LFD +P RD ++W +MIDGY  +G V +A 
Sbjct: 256 ------------NSMIDGYVKHGRIEDAKGLFDVMPRRDVVTWATMIDGYAKLGFVHHAK 303

Query: 287 YLFHNMPDRDAVAWTAMISGLVQNELFVEATYLF--MEMRAHGVPPLNATFSVLFGAAGA 344
            LF  MP RD VA+ +M++G VQN+  +EA  +F  ME  +H +P  + T  ++  A   
Sbjct: 304 TLFDQMPHRDVVAYNSMMAGYVQNKYHMEALEIFSDMEKESHLLPD-DTTLVIVLPAIAQ 362

Query: 345 TANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSM 404
              +     +H  +++ +      L   LI MY+KCG I +A  +F  + ++ +  WN+M
Sbjct: 363 LGRLSKAIDMHLYIVEKQFYLGGKLGVALIDMYSKCGSIQHAMLVFEGIENKSIDHWNAM 422

Query: 405 VMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYK 464
           + G + HGL      +   +      P+ +TF+G+L+ACSH+GLV  G   F  M   +K
Sbjct: 423 IGGLAIHGLGESAFDMLLQIERLSLKPDDITFVGVLNACSHSGLVKEGLLCFELMRRKHK 482

Query: 465 IQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHA 524
           I+P  +HY  M+++L R+G I+ A+  +  +P EP+  IW   L AC       E  E  
Sbjct: 483 IEPRLQHYGCMVDILSRSGSIELAKNLIEEMPVEPNDVIWRTFLTACSH-HKEFETGELV 541

Query: 525 AKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQM 584
           AK L+     N  ++V+L N+YA+ G   +  ++R  M  + + K+PGCSW+  +G +  
Sbjct: 542 AKHLILQAGYNPSSYVLLSNMYASFGMWKDVRRVRTMMKERKIEKIPGCSWIELDGRVHE 601

Query: 585 FL 586
           F 
Sbjct: 602 FF 603



 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 119/410 (29%), Positives = 219/410 (53%), Gaps = 18/410 (4%)

Query: 46  NAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMP--ERN 103
           N ++  +L+ G L  +R++F+ MP+R+ VS+ +MI G    G +  AR+LF+ MP   +N
Sbjct: 160 NCLIGLYLKCGCLGLSRQMFDRMPKRDSVSYNSMIDGYVKCGLIVSARELFDLMPMEMKN 219

Query: 104 VVSWNSMVVGLIRNGE-LNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEME 162
           ++SWNSM+ G  +  + ++ A K+F  MP K++ISWN+MI GYV+   + +A  LF+ M 
Sbjct: 220 LISWNSMISGYAQTSDGVDIASKLFADMPEKDLISWNSMIDGYVKHGRIEDAKGLFDVMP 279

Query: 163 ERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIE 222
            R+VVTW +MI GY + G V     LF +MP ++VV++ +M+ G+  N +H E+L +F +
Sbjct: 280 RRDVVTWATMIDGYAKLGFVHHAKTLFDQMPHRDVVAYNSMMAGYVQNKYHMEALEIFSD 339

Query: 223 MKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISW-----TSMIDGYL 277
           M+   ++    +  +   ++    + GRL +A ++   + V  +         ++ID Y 
Sbjct: 340 MEK--ESHLLPDDTTLVIVLPAIAQLGRLSKAIDMHLYI-VEKQFYLGGKLGVALIDMYS 396

Query: 278 SVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSV 337
             G + +A  +F  + ++    W AMI GL  + L   A  + +++    + P + TF  
Sbjct: 397 KCGSIQHAMLVFEGIENKSIDHWNAMIGGLAIHGLGESAFDMLLQIERLSLKPDDITFVG 456

Query: 338 LFGAAGATANIDLGRQIHCV-LMKTESESDLILEN--CLISMYAKCGVIDNAYNIFSNM- 393
           +  A   +  +  G  + C  LM+ + + +  L++  C++ + ++ G I+ A N+   M 
Sbjct: 457 VLNACSHSGLVKEG--LLCFELMRRKHKIEPRLQHYGCMVDILSRSGSIELAKNLIEEMP 514

Query: 394 VSRDLVSWNSMVMGFSHHG-LANETLKVFESMLESGTHPNSVTFLGILSA 442
           V  + V W + +   SHH       L     +L++G +P+S   L  + A
Sbjct: 515 VEPNDVIWRTFLTACSHHKEFETGELVAKHLILQAGYNPSSYVLLSNMYA 564



 Score =  141 bits (356), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 91/344 (26%), Positives = 165/344 (47%), Gaps = 77/344 (22%)

Query: 7   PKSLVVHLTSSITKYSKRGFIDEAKALFQLMP--QRNVVSYNAMLSGFLQNGR-LSEARR 63
           PK   V   S I  Y K G I  A+ LF LMP   +N++S+N+M+SG+ Q    +  A +
Sbjct: 183 PKRDSVSYNSMIDGYVKCGLIVSARELFDLMPMEMKNLISWNSMISGYAQTSDGVDIASK 242

Query: 64  LFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEA 123
           LF +MPE++++SW +MI G    GR+ +A+ LF+ MP R+VV+W +M+ G  + G ++ A
Sbjct: 243 LFADMPEKDLISWNSMIDGYVKHGRIEDAKGLFDVMPRRDVVTWATMIDGYAKLGFVHHA 302

Query: 124 RKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERN---------VVTW----- 169
           + +F+ MP ++V+++N+M+AGYV+     EA+ +F +ME+ +         V+       
Sbjct: 303 KTLFDQMPHRDVVAYNSMMAGYVQNKYHMEALEIFSDMEKESHLLPDDTTLVIVLPAIAQ 362

Query: 170 --------------------------TSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAM 203
                                      ++I  Y + G ++    +F  +  K++  W AM
Sbjct: 363 LGRLSKAIDMHLYIVEKQFYLGGKLGVALIDMYSKCGSIQHAMLVFEGIENKSIDHWNAM 422

Query: 204 IGGFAWNGFHKESLLLFIEMK---------------------GICDNGNNC--------- 233
           IGG A +G  + +  + ++++                     G+   G  C         
Sbjct: 423 IGGLAIHGLGESAFDMLLQIERLSLKPDDITFVGVLNACSHSGLVKEGLLCFELMRRKHK 482

Query: 234 ---NVQSCNSMINGYIRFGRLEEAQNLFDTVPVR-DEISWTSMI 273
               +Q    M++   R G +E A+NL + +PV  +++ W + +
Sbjct: 483 IEPRLQHYGCMVDILSRSGSIELAKNLIEEMPVEPNDVIWRTFL 526



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 73/273 (26%), Positives = 123/273 (45%), Gaps = 23/273 (8%)

Query: 296 DAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIH 355
           D   W A+I      +   +A  L   M  +GV     + S++  A      +  G QIH
Sbjct: 85  DPFLWNAVIKSHSHGKDPRQALLLLCLMLENGVSVDKFSLSLVLKACSRLGFVKGGMQIH 144

Query: 356 CVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLAN 415
             L KT   SDL L+NCLI +Y KCG +  +  +F  M  RD VS+NSM+ G+   GL  
Sbjct: 145 GFLKKTGLWSDLFLQNCLIGLYLKCGCLGLSRQMFDRMPKRDSVSYNSMIDGYVKCGLIV 204

Query: 416 ETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEH---- 471
              ++F+ M       N +++  ++S  +     S G ++ + +F        PE     
Sbjct: 205 SARELFDLM--PMEMKNLISWNSMISGYAQT---SDGVDIASKLF-----ADMPEKDLIS 254

Query: 472 YVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIA-EHAAKRLLE 530
           + SMI+   + G+I++A+     +P   D   W  ++      +G A++   H AK L +
Sbjct: 255 WNSMIDGYVKHGRIEDAKGLFDVMP-RRDVVTWATMI------DGYAKLGFVHHAKTLFD 307

Query: 531 LDP-LNAPAHVVLCNIYAASGRHVEEHKLRMDM 562
             P  +  A+  +   Y  +  H+E  ++  DM
Sbjct: 308 QMPHRDVVAYNSMMAGYVQNKYHMEALEIFSDM 340


>gi|2583119|gb|AAB82628.1| hypothetical protein [Arabidopsis thaliana]
          Length = 606

 Score =  286 bits (732), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 159/482 (32%), Positives = 261/482 (54%), Gaps = 46/482 (9%)

Query: 111 VVGL-IRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFE--EMEERNVV 167
           ++GL ++ G L  +R++F+ MP ++ +S+N+MI GYV+C ++  A  LF+   ME +N++
Sbjct: 155 LIGLYLKCGCLGLSRQMFDRMPKRDSVSYNSMIDGYVKCGLIVSARELFDLMPMEMKNLI 214

Query: 168 TWTSMISGYCRAGE-VEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGI 226
           +W SMISGY +  + V+    LF  MP K+++SW                          
Sbjct: 215 SWNSMISGYAQTSDGVDIASKLFADMPEKDLISW-------------------------- 248

Query: 227 CDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAY 286
                       NSMI+GY++ GR+E+A+ LFD +P RD ++W +MIDGY  +G V +A 
Sbjct: 249 ------------NSMIDGYVKHGRIEDAKGLFDVMPRRDVVTWATMIDGYAKLGFVHHAK 296

Query: 287 YLFHNMPDRDAVAWTAMISGLVQNELFVEATYLF--MEMRAHGVPPLNATFSVLFGAAGA 344
            LF  MP RD VA+ +M++G VQN+  +EA  +F  ME  +H +P  + T  ++  A   
Sbjct: 297 TLFDQMPHRDVVAYNSMMAGYVQNKYHMEALEIFSDMEKESHLLPD-DTTLVIVLPAIAQ 355

Query: 345 TANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSM 404
              +     +H  +++ +      L   LI MY+KCG I +A  +F  + ++ +  WN+M
Sbjct: 356 LGRLSKAIDMHLYIVEKQFYLGGKLGVALIDMYSKCGSIQHAMLVFEGIENKSIDHWNAM 415

Query: 405 VMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYK 464
           + G + HGL      +   +      P+ +TF+G+L+ACSH+GLV  G   F  M   +K
Sbjct: 416 IGGLAIHGLGESAFDMLLQIERLSLKPDDITFVGVLNACSHSGLVKEGLLCFELMRRKHK 475

Query: 465 IQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHA 524
           I+P  +HY  M+++L R+G I+ A+  +  +P EP+  IW   L AC       E  E  
Sbjct: 476 IEPRLQHYGCMVDILSRSGSIELAKNLIEEMPVEPNDVIWRTFLTACSH-HKEFETGELV 534

Query: 525 AKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQM 584
           AK L+     N  ++V+L N+YA+ G   +  ++R  M  + + K+PGCSW+  +G +  
Sbjct: 535 AKHLILQAGYNPSSYVLLSNMYASFGMWKDVRRVRTMMKERKIEKIPGCSWIELDGRVHE 594

Query: 585 FL 586
           F 
Sbjct: 595 FF 596



 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 119/410 (29%), Positives = 219/410 (53%), Gaps = 18/410 (4%)

Query: 46  NAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMP--ERN 103
           N ++  +L+ G L  +R++F+ MP+R+ VS+ +MI G    G +  AR+LF+ MP   +N
Sbjct: 153 NCLIGLYLKCGCLGLSRQMFDRMPKRDSVSYNSMIDGYVKCGLIVSARELFDLMPMEMKN 212

Query: 104 VVSWNSMVVGLIRNGE-LNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEME 162
           ++SWNSM+ G  +  + ++ A K+F  MP K++ISWN+MI GYV+   + +A  LF+ M 
Sbjct: 213 LISWNSMISGYAQTSDGVDIASKLFADMPEKDLISWNSMIDGYVKHGRIEDAKGLFDVMP 272

Query: 163 ERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIE 222
            R+VVTW +MI GY + G V     LF +MP ++VV++ +M+ G+  N +H E+L +F +
Sbjct: 273 RRDVVTWATMIDGYAKLGFVHHAKTLFDQMPHRDVVAYNSMMAGYVQNKYHMEALEIFSD 332

Query: 223 MKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISW-----TSMIDGYL 277
           M+   ++    +  +   ++    + GRL +A ++   + V  +         ++ID Y 
Sbjct: 333 MEK--ESHLLPDDTTLVIVLPAIAQLGRLSKAIDMHLYI-VEKQFYLGGKLGVALIDMYS 389

Query: 278 SVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSV 337
             G + +A  +F  + ++    W AMI GL  + L   A  + +++    + P + TF  
Sbjct: 390 KCGSIQHAMLVFEGIENKSIDHWNAMIGGLAIHGLGESAFDMLLQIERLSLKPDDITFVG 449

Query: 338 LFGAAGATANIDLGRQIHCV-LMKTESESDLILEN--CLISMYAKCGVIDNAYNIFSNM- 393
           +  A   +  +  G  + C  LM+ + + +  L++  C++ + ++ G I+ A N+   M 
Sbjct: 450 VLNACSHSGLVKEG--LLCFELMRRKHKIEPRLQHYGCMVDILSRSGSIELAKNLIEEMP 507

Query: 394 VSRDLVSWNSMVMGFSHHG-LANETLKVFESMLESGTHPNSVTFLGILSA 442
           V  + V W + +   SHH       L     +L++G +P+S   L  + A
Sbjct: 508 VEPNDVIWRTFLTACSHHKEFETGELVAKHLILQAGYNPSSYVLLSNMYA 557



 Score =  141 bits (356), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 91/344 (26%), Positives = 165/344 (47%), Gaps = 77/344 (22%)

Query: 7   PKSLVVHLTSSITKYSKRGFIDEAKALFQLMP--QRNVVSYNAMLSGFLQNGR-LSEARR 63
           PK   V   S I  Y K G I  A+ LF LMP   +N++S+N+M+SG+ Q    +  A +
Sbjct: 176 PKRDSVSYNSMIDGYVKCGLIVSARELFDLMPMEMKNLISWNSMISGYAQTSDGVDIASK 235

Query: 64  LFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEA 123
           LF +MPE++++SW +MI G    GR+ +A+ LF+ MP R+VV+W +M+ G  + G ++ A
Sbjct: 236 LFADMPEKDLISWNSMIDGYVKHGRIEDAKGLFDVMPRRDVVTWATMIDGYAKLGFVHHA 295

Query: 124 RKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERN---------VVTW----- 169
           + +F+ MP ++V+++N+M+AGYV+     EA+ +F +ME+ +         V+       
Sbjct: 296 KTLFDQMPHRDVVAYNSMMAGYVQNKYHMEALEIFSDMEKESHLLPDDTTLVIVLPAIAQ 355

Query: 170 --------------------------TSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAM 203
                                      ++I  Y + G ++    +F  +  K++  W AM
Sbjct: 356 LGRLSKAIDMHLYIVEKQFYLGGKLGVALIDMYSKCGSIQHAMLVFEGIENKSIDHWNAM 415

Query: 204 IGGFAWNGFHKESLLLFIEMK---------------------GICDNGNNC--------- 233
           IGG A +G  + +  + ++++                     G+   G  C         
Sbjct: 416 IGGLAIHGLGESAFDMLLQIERLSLKPDDITFVGVLNACSHSGLVKEGLLCFELMRRKHK 475

Query: 234 ---NVQSCNSMINGYIRFGRLEEAQNLFDTVPVR-DEISWTSMI 273
               +Q    M++   R G +E A+NL + +PV  +++ W + +
Sbjct: 476 IEPRLQHYGCMVDILSRSGSIELAKNLIEEMPVEPNDVIWRTFL 519



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 73/273 (26%), Positives = 123/273 (45%), Gaps = 23/273 (8%)

Query: 296 DAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIH 355
           D   W A+I      +   +A  L   M  +GV     + S++  A      +  G QIH
Sbjct: 78  DPFLWNAVIKSHSHGKDPRQALLLLCLMLENGVSVDKFSLSLVLKACSRLGFVKGGMQIH 137

Query: 356 CVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLAN 415
             L KT   SDL L+NCLI +Y KCG +  +  +F  M  RD VS+NSM+ G+   GL  
Sbjct: 138 GFLKKTGLWSDLFLQNCLIGLYLKCGCLGLSRQMFDRMPKRDSVSYNSMIDGYVKCGLIV 197

Query: 416 ETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEH---- 471
              ++F+ M       N +++  ++S  +     S G ++ + +F        PE     
Sbjct: 198 SARELFDLM--PMEMKNLISWNSMISGYAQT---SDGVDIASKLF-----ADMPEKDLIS 247

Query: 472 YVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIA-EHAAKRLLE 530
           + SMI+   + G+I++A+     +P   D   W  ++      +G A++   H AK L +
Sbjct: 248 WNSMIDGYVKHGRIEDAKGLFDVMP-RRDVVTWATMI------DGYAKLGFVHHAKTLFD 300

Query: 531 LDP-LNAPAHVVLCNIYAASGRHVEEHKLRMDM 562
             P  +  A+  +   Y  +  H+E  ++  DM
Sbjct: 301 QMPHRDVVAYNSMMAGYVQNKYHMEALEIFSDM 333


>gi|359497798|ref|XP_003635646.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like, partial [Vitis vinifera]
          Length = 809

 Score =  286 bits (732), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 196/660 (29%), Positives = 323/660 (48%), Gaps = 92/660 (13%)

Query: 12  VHLTSSITKYSKRGFIDEAKALFQLMP-QRNVVSYNAMLSGFLQNGRLSEARRLFEEMPE 70
           V L + I+ YSK G  + A+ +F+ M  +R++VS++AM+S F  N    +A   F +M E
Sbjct: 62  VVLNTLISLYSKCGDTETARLIFEGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFLDMLE 121

Query: 71  RNVV------------------SWTAMI------------------CGLAD-----AGRV 89
                                 +W   I                  C L D     +G +
Sbjct: 122 LGFYPNEYCFAAVIRACSNANYAWVGEIIYGFVVKTGYLEADVCVGCELIDMFVKGSGDL 181

Query: 90  CEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECC 149
             A K+F++MPERN+V+W  M+    + G   +A  +F  M +   +      +  +  C
Sbjct: 182 GSAYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSAC 241

Query: 150 MMGEAIVLFEEMEER--------NVVTWTSMISGYCRA---GEVEEGYCLFRRMPRKNVV 198
                + L +++  R        +V    S++  Y +    G V++   +F +MP  NV+
Sbjct: 242 TELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVM 301

Query: 199 SWTAMIGGFAWNG-FHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGR------L 251
           SWTA+I  +  +G   KE++ LF +M                  I+G+IR         L
Sbjct: 302 SWTAIITAYVQSGECDKEAIELFCKM------------------ISGHIRPNHFSFSSVL 343

Query: 252 EEAQNLFDTVPVRDEISWT-------------SMIDGYLSVGQVSNAYYLFHNMPDRDAV 298
           +   NL D        S+              S+I  Y   G++ +A   F  + +++ V
Sbjct: 344 KACGNLSDPYTGEQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLV 403

Query: 299 AWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVL 358
           ++ A++ G  +N    EA  LF E+   G+     TF+ L   A +   +  G QIH  L
Sbjct: 404 SYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRL 463

Query: 359 MKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETL 418
           +K   +S+  + N LISMY++CG I+ A+ +F+ M  R+++SW SM+ GF+ HG A   L
Sbjct: 464 LKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRAL 523

Query: 419 KVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINL 478
           ++F  MLE+GT PN +T++ +LSACSH G++S G + FN+M+  + I P  EHY  M++L
Sbjct: 524 EMFHKMLETGTKPNEITYVAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDL 583

Query: 479 LGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPA 538
           LGR+G + EA EF+  +P   D  +W  LLGAC    GN E+  HAA+ +LE +P +  A
Sbjct: 584 LGRSGLLVEAMEFINSMPLMADALVWRTLLGACRV-HGNTELGRHAAEMILEQEPDDPAA 642

Query: 539 HVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
           +++L N++A++G+  +  K+R  M  + + K  GCSW+     +  F  G+    Q  +I
Sbjct: 643 YILLSNLHASAGQWKDVVKIRKSMKERNLIKEAGCSWIEVENRVHRFHVGETSHPQAWQI 702



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 110/440 (25%), Positives = 204/440 (46%), Gaps = 38/440 (8%)

Query: 1   MSERNHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVV----SYNAMLSGFLQNG 56
           M ERN     +V  T  IT++++ G   +A  LF  M     V    +Y+++LS   + G
Sbjct: 191 MPERN-----LVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTELG 245

Query: 57  RLSEARRLFEEMPERNVVSWTAMICGLADA-------GRVCEARKLFEEMPERNVVSWNS 109
            L+  ++L   +    +     + C L D        G V ++RK+FE+MPE NV+SW +
Sbjct: 246 LLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTA 305

Query: 110 MVVGLIRNGELN-EARKVFNSMPIKNVISWNAMIAGYVECC------MMGEAIVLFE--- 159
           ++   +++GE + EA ++F  M   ++   +   +  ++ C        GE +  +    
Sbjct: 306 IITAYVQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAVKL 365

Query: 160 EMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLL 219
            +   N V   S+IS Y R+G +E+    F  +  KN+VS+ A++ G+A N   +E+ LL
Sbjct: 366 GIASVNCVG-NSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLL 424

Query: 220 FIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQN----LFDTVPVRDEISWTSMIDG 275
           F E   I D G   +  +  S+++G    G + + +     L       ++    ++I  
Sbjct: 425 FNE---IADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISM 481

Query: 276 YLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATF 335
           Y   G +  A+ +F+ M DR+ ++WT+MI+G  ++     A  +F +M   G  P   T+
Sbjct: 482 YSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITY 541

Query: 336 SVLFGAAGATANIDLGRQIHCVLMKTESESDLILEN--CLISMYAKCGVIDNAYNIFSNM 393
             +  A      I  G Q H   M  E      +E+  C++ +  + G++  A    ++M
Sbjct: 542 VAVLSACSHVGMISEG-QKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSM 600

Query: 394 -VSRDLVSWNSMVMGFSHHG 412
            +  D + W +++     HG
Sbjct: 601 PLMADALVWRTLLGACRVHG 620



 Score =  119 bits (297), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 86/351 (24%), Positives = 166/351 (47%), Gaps = 39/351 (11%)

Query: 163 ERNVVTWTSMISGYCRAGEVEEGYCLFRRMP-RKNVVSWTAMIGGFAWNGFHKESLLLFI 221
           E + V   ++IS Y + G+ E    +F  M  ++++VSW+AM+  FA N    +++  F+
Sbjct: 58  ELDSVVLNTLISLYSKCGDTETARLIFEGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFL 117

Query: 222 EM------------KGICDNGNNCNVQSCNSMINGY-IRFGRLEEAQNLFDTVPVRDEIS 268
           +M              +    +N N      +I G+ ++ G LE            D   
Sbjct: 118 DMLELGFYPNEYCFAAVIRACSNANYAWVGEIIYGFVVKTGYLEA-----------DVCV 166

Query: 269 WTSMIDGYLS-VGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHG 327
              +ID ++   G + +AY +F  MP+R+ V WT MI+   Q     +A  LF++M   G
Sbjct: 167 GCELIDMFVKGSGDLGSAYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSG 226

Query: 328 VPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKC---GVID 384
             P   T+S +  A      + LG+Q+H  +++     D+ +   L+ MYAKC   G +D
Sbjct: 227 YVPDRFTYSSVLSACTELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVD 286

Query: 385 NAYNIFSNMVSRDLVSWNSMVMGFSHHGLAN-ETLKVFESMLESGTHPNSVTFLGILSAC 443
           ++  +F  M   +++SW +++  +   G  + E +++F  M+     PN  +F  +L AC
Sbjct: 287 DSRKVFEQMPEHNVMSWTAIITAYVQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKAC 346

Query: 444 SHAGLVSRGWELFNAMFDVYKIQPGPEHY----VSMINLLGRAGKIKEAEE 490
            +      G ++++     Y ++ G         S+I++  R+G++++A +
Sbjct: 347 GNLSDPYTGEQVYS-----YAVKLGIASVNCVGNSLISMYARSGRMEDARK 392



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 86/336 (25%), Positives = 154/336 (45%), Gaps = 46/336 (13%)

Query: 265 DEISWTSMIDGYLSVGQVSNAYYLFHNMPD-RDAVAWTAMISGLVQNELFVEATYLFMEM 323
           D +   ++I  Y   G    A  +F  M + RD V+W+AM+S    N +  +A + F++M
Sbjct: 60  DSVVLNTLISLYSKCGDTETARLIFEGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFLDM 119

Query: 324 RAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTES-ESDLILENCLISMYAK-CG 381
              G  P    F+ +  A        +G  I+  ++KT   E+D+ +   LI M+ K  G
Sbjct: 120 LELGFYPNEYCFAAVIRACSNANYAWVGEIIYGFVVKTGYLEADVCVGCELIDMFVKGSG 179

Query: 382 VIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILS 441
            + +AY +F  M  R+LV+W  M+  F+  G A + + +F  M  SG  P+  T+  +LS
Sbjct: 180 DLGSAYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLS 239

Query: 442 ACSHAGLVSRGWELFN---------------AMFDVYK--------------IQPGPEH- 471
           AC+  GL++ G +L +               ++ D+Y                +  PEH 
Sbjct: 240 ACTELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHN 299

Query: 472 ---YVSMINLLGRAGKI-KEAEEFVLRL---PFEPDHRIWGALLGACGFCEG---NAEIA 521
              + ++I    ++G+  KEA E   ++      P+H  + ++L ACG         ++ 
Sbjct: 300 VMSWTAIITAYVQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVY 359

Query: 522 EHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHK 557
            +A K  L +  +N   + ++ ++YA SGR  +  K
Sbjct: 360 SYAVK--LGIASVNCVGNSLI-SMYARSGRMEDARK 392



 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 68/226 (30%), Positives = 106/226 (46%), Gaps = 38/226 (16%)

Query: 323 MRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGV 382
           M     PP   T+S+L  +     N  LG+ +H  LM++  E D ++ N LIS+Y+KCG 
Sbjct: 17  MTQQNAPPDLTTYSILLKSCIRFRNFQLGKLVHRKLMQSGLELDSVVLNTLISLYSKCGD 76

Query: 383 IDNAYNIFSNMVS-RDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILS 441
            + A  IF  M + RDLVSW++MV  F+++ +  + +  F  MLE G +PN   F  ++ 
Sbjct: 77  TETARLIFEGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFLDMLELGFYPNEYCFAAVIR 136

Query: 442 ACSHA----------GLVSR----------GWELFNAMF--------DVYKI-QPGPEH- 471
           ACS+A          G V +          G EL + MF          YK+    PE  
Sbjct: 137 ACSNANYAWVGEIIYGFVVKTGYLEADVCVGCELID-MFVKGSGDLGSAYKVFDKMPERN 195

Query: 472 ---YVSMINLLGRAGKIKEAEEFVLRLP---FEPDHRIWGALLGAC 511
              +  MI    + G  ++A +  L +    + PD   + ++L AC
Sbjct: 196 LVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSAC 241


>gi|225440839|ref|XP_002276333.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 705

 Score =  286 bits (732), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 171/561 (30%), Positives = 290/561 (51%), Gaps = 41/561 (7%)

Query: 47  AMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNV-- 104
           A++  +++   + +AR LF++M ER++V+WT MI G A+ G+  E+  LFE+M E  V  
Sbjct: 70  ALVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFEKMREEGVVP 129

Query: 105 --VSWNSMVVGLIRNGELNEARKVFNSMPIK----NVISWNAMIAGYVECCMMGEAIVLF 158
             V+  ++V    + G +++AR + + +  K    +VI   AMI  Y +C  +  A  +F
Sbjct: 130 DKVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQLDVILGTAMIDMYAKCGCVESAREIF 189

Query: 159 EEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLL 218
           + MEE+NV++W++MI+ Y   G+  +   LFR M    ++     +    +     ++L 
Sbjct: 190 DRMEEKNVISWSAMIAAYGYHGQGRKALDLFRMMLSSGMLPDKITLASLLYACSDLKNLQ 249

Query: 219 LFIEMKGICDN-GNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYL 277
           +   +  I    G + +   C ++++ Y +   +E+A+ LFD +P RD ++WT MI GY 
Sbjct: 250 MGRLIHHIVYKFGLDLDHFVCAALVDMYGKCREIEDARFLFDKMPERDLVTWTVMIGGYA 309

Query: 278 SVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSV 337
             G  +                               E+  LF +MR  GV P       
Sbjct: 310 ECGNAN-------------------------------ESLVLFDKMREEGVVPDKVAMVT 338

Query: 338 LFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRD 397
           +  A      +   R I   + + + + D+IL   +I M+AKCG +++A  IF  M  ++
Sbjct: 339 VVFACAKLGAMHKARTIDDYIQRKKFQLDVILGTAMIDMHAKCGCVESAREIFDRMEEKN 398

Query: 398 LVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFN 457
           ++SW++M+  + +HG   + L +F  ML SG  PN +T + +L ACSHAGLV  G   F+
Sbjct: 399 VISWSAMIAAYGYHGQGRKALDLFPMMLRSGILPNKITLVSLLYACSHAGLVEEGLRFFS 458

Query: 458 AMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGN 517
            M++ Y ++   +HY  +++LLGRAG++ EA + +  +  E D  +WGA LGAC     +
Sbjct: 459 LMWEDYSVRADVKHYTCVVDLLGRAGRLDEALKLIESMTVEKDEGLWGAFLGACR-THKD 517

Query: 518 AEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLM 577
             +AE AA  LLEL P N   +++L NIYA +GR  +  K R  M  + ++K+PG +W+ 
Sbjct: 518 VVLAEKAATSLLELQPQNPGHYILLSNIYANAGRWEDVAKTRDLMSQRRLKKIPGWTWIE 577

Query: 578 RNGGIQMFLSGDKIPAQVAEI 598
            +     F  GD    +  EI
Sbjct: 578 VDNKSHQFSVGDTTHPRSKEI 598



 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 89/322 (27%), Positives = 156/322 (48%), Gaps = 14/322 (4%)

Query: 203 MIGGFAWNGFHKESLLLFIEMKGICDNGNNCN----VQSCNSMINGYIRFGRLEEAQNLF 258
           M+GGFA  G +      F E+       +N      +++C  + N  ++ GRL     ++
Sbjct: 1   MVGGFAKVGDYINCFGTFRELIRCGARPDNYTLPFVIRACRDLKN--LQMGRLIH-HIVY 57

Query: 259 DTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATY 318
                 D     +++D Y+   ++ +A +LF  M +RD V WT MI G  +     E+  
Sbjct: 58  KFGLDLDHFVCAALVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYAECGKANESLV 117

Query: 319 LFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYA 378
           LF +MR  GV P       +  A      +   R I   + + + + D+IL   +I MYA
Sbjct: 118 LFEKMREEGVVPDKVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQLDVILGTAMIDMYA 177

Query: 379 KCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLG 438
           KCG +++A  IF  M  ++++SW++M+  + +HG   + L +F  ML SG  P+ +T   
Sbjct: 178 KCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFRMMLSSGMLPDKITLAS 237

Query: 439 ILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYV--SMINLLGRAGKIKEAEEFVLRLP 496
           +L ACS    +  G  + +    VYK     +H+V  +++++ G+  +I++A     ++P
Sbjct: 238 LLYACSDLKNLQMGRLIHHI---VYKFGLDLDHFVCAALVDMYGKCREIEDARFLFDKMP 294

Query: 497 FEPDHRIWGALLGACGFCEGNA 518
            E D   W  ++G    C GNA
Sbjct: 295 -ERDLVTWTVMIGGYAEC-GNA 314



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 82/348 (23%), Positives = 160/348 (45%), Gaps = 62/348 (17%)

Query: 15  TSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEM------ 68
           T+ I  Y+K G ++ A+ +F  M ++NV+S++AM++ +  +G+  +A  LF  M      
Sbjct: 170 TAMIDMYAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFRMMLSSGML 229

Query: 69  PERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLI-----RNGELNEA 123
           P++  ++  +++   +D   + +  +L   +  +  +  +  V   +     +  E+ +A
Sbjct: 230 PDK--ITLASLLYACSDLKNL-QMGRLIHHIVYKFGLDLDHFVCAALVDMYGKCREIEDA 286

Query: 124 RKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEER------------------- 164
           R +F+ MP +++++W  MI GY EC    E++VLF++M E                    
Sbjct: 287 RFLFDKMPERDLVTWTVMIGGYAECGNANESLVLFDKMREEGVVPDKVAMVTVVFACAKL 346

Query: 165 --------------------NVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMI 204
                               +V+  T+MI  + + G VE    +F RM  KNV+SW+AMI
Sbjct: 347 GAMHKARTIDDYIQRKKFQLDVILGTAMIDMHAKCGCVESAREIFDRMEEKNVISWSAMI 406

Query: 205 GGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLF----DT 260
             + ++G  +++L LF  M     +G   N  +  S++      G +EE    F    + 
Sbjct: 407 AAYGYHGQGRKALDLFPMM---LRSGILPNKITLVSLLYACSHAGLVEEGLRFFSLMWED 463

Query: 261 VPVRDEIS-WTSMIDGYLSVGQVSNAYYLFHNMP-DRDAVAWTAMISG 306
             VR ++  +T ++D     G++  A  L  +M  ++D   W A +  
Sbjct: 464 YSVRADVKHYTCVVDLLGRAGRLDEALKLIESMTVEKDEGLWGAFLGA 511



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 54/207 (26%), Positives = 99/207 (47%), Gaps = 24/207 (11%)

Query: 15  TSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPER--- 71
           T+ I  ++K G ++ A+ +F  M ++NV+S++AM++ +  +G+  +A  LF  M      
Sbjct: 372 TAMIDMHAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFPMMLRSGIL 431

Query: 72  -NVVSWTAMICGLADAGRVCEARKLF----EEMPERNVVSWNSMVVGLI-RNGELNEARK 125
            N ++  +++   + AG V E  + F    E+   R  V   + VV L+ R G L+EA K
Sbjct: 432 PNKITLVSLLYACSHAGLVEEGLRFFSLMWEDYSVRADVKHYTCVVDLLGRAGRLDEALK 491

Query: 126 VFNSMPI-KNVISWNAMIAGYVECCMMGEAIVLFE-------EMEERNVVTWTSMISGYC 177
           +  SM + K+   W A +      C   + +VL E       E++ +N   +  + + Y 
Sbjct: 492 LIESMTVEKDEGLWGAFLGA----CRTHKDVVLAEKAATSLLELQPQNPGHYILLSNIYA 547

Query: 178 RAG---EVEEGYCLFRRMPRKNVVSWT 201
            AG   +V +   L  +   K +  WT
Sbjct: 548 NAGRWEDVAKTRDLMSQRRLKKIPGWT 574


>gi|302143938|emb|CBI23043.3| unnamed protein product [Vitis vinifera]
          Length = 539

 Score =  286 bits (732), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 181/546 (33%), Positives = 276/546 (50%), Gaps = 50/546 (9%)

Query: 67  EMPERNVVSWTAMICGLADAGRVCEARKLFEEMP----ERNVVSWNSMVVGLIRNGELNE 122
           E  + N+VSW+A+I G A  G   EA +L   M     E N  +  S++    R   LN 
Sbjct: 5   ENSKPNLVSWSAVIGGFAQNGYDKEALELLCRMQAAGFEPNARTLASVLPACARLQNLNL 64

Query: 123 ARKVFNSMP----IKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCR 178
            +++   +     + N    N ++  Y  C  MG A+ +F     +NVV++ +MI GYC 
Sbjct: 65  GKEIHGYVTRHGFMSNPFVVNGLVDVYRRCADMGSALKIFSGFSVKNVVSYNTMIVGYCE 124

Query: 179 AGEVEEGYCLFRR--MPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQ 236
            G VE+   LF +  +  K+ +SW +MI G+A                   DN   C   
Sbjct: 125 NGNVEKAKELFDQMELVGKDTISWNSMISGYA-------------------DNLLKCE-- 163

Query: 237 SCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMP--- 293
                         L+ AQ  FD V  RD  +W  +I GY    Q+ N   L   M    
Sbjct: 164 -------------DLKAAQLAFDGVTERDTATWNVLISGYACCNQLENIQNLIQKMKGDG 210

Query: 294 -DRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGR 352
            + +   W  +ISG V+N     A  LF EM+   + P   T  ++  A    A I  G+
Sbjct: 211 FEPNVYTWNGIISGHVENGHNELALRLFTEMQTSSLRPDIYTVGIILPACARLATIARGK 270

Query: 353 QIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHG 412
           Q+H   ++   E D+ +   L+ MYAKCG I +A  +++ + + +LVS N+M+  ++ HG
Sbjct: 271 QVHAHSIRQGYELDVHIGAALVDMYAKCGSIKHAMQVYNRISNPNLVSQNAMLTAYAMHG 330

Query: 413 LANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHY 472
             +E + +F +ML +G  P+ VTFL +LS+C HAG V  G E F+ M   Y + P  +HY
Sbjct: 331 HGDEGIALFRNMLGNGFRPDHVTFLSVLSSCVHAGAVETGHEFFDLM-TYYNVTPSLKHY 389

Query: 473 VSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELD 532
             +++LL RAG++ EA E V ++P +PD  +WGALLG C    GN E+ E AA+ L+EL+
Sbjct: 390 TCIVDLLSRAGRLDEAYELVKKIPRKPDSVMWGALLGGC-VIWGNVELGEIAAESLIELE 448

Query: 533 PLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIP 592
           P N   +V+L N+YA +GR  +  + R  +  +G+ K PGCSW+     I +FLS DK  
Sbjct: 449 PNNTGNYVLLANLYAYAGRWHDLDRTRQMIKDRGMHKSPGCSWIEDREDIHVFLSCDKSH 508

Query: 593 AQVAEI 598
            +  +I
Sbjct: 509 EKTEDI 514



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 103/421 (24%), Positives = 185/421 (43%), Gaps = 57/421 (13%)

Query: 41  NVVSYNAMLSGFLQNGRLSEARRLFEEM------PERNVVSWTAMIC------------- 81
           N+VS++A++ GF QNG   EA  L   M      P    ++     C             
Sbjct: 10  NLVSWSAVIGGFAQNGYDKEALELLCRMQAAGFEPNARTLASVLPACARLQNLNLGKEIH 69

Query: 82  ----------------GLADAGRVC----EARKLFEEMPERNVVSWNSMVVGLIRNGELN 121
                           GL D  R C     A K+F     +NVVS+N+M+VG   NG + 
Sbjct: 70  GYVTRHGFMSNPFVVNGLVDVYRRCADMGSALKIFSGFSVKNVVSYNTMIVGYCENGNVE 129

Query: 122 EARKVFNSMPI--KNVISWNAMIAGYVE----CCMMGEAIVLFEEMEERNVVTWTSMISG 175
           +A+++F+ M +  K+ ISWN+MI+GY +    C  +  A + F+ + ER+  TW  +ISG
Sbjct: 130 KAKELFDQMELVGKDTISWNSMISGYADNLLKCEDLKAAQLAFDGVTERDTATWNVLISG 189

Query: 176 YCRAGEVEEGYCLFRRMP----RKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGN 231
           Y    ++E    L ++M       NV +W  +I G   NG ++ +L LF EM+      +
Sbjct: 190 YACCNQLENIQNLIQKMKGDGFEPNVYTWNGIISGHVENGHNELALRLFTEMQTSSLRPD 249

Query: 232 NCNV----QSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYY 287
              V     +C  +    I  G+   A ++     +   I   +++D Y   G + +A  
Sbjct: 250 IYTVGIILPACARLAT--IARGKQVHAHSIRQGYELDVHIG-AALVDMYAKCGSIKHAMQ 306

Query: 288 LFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATAN 347
           +++ + + + V+  AM++    +    E   LF  M  +G  P + TF  +  +      
Sbjct: 307 VYNRISNPNLVSQNAMLTAYAMHGHGDEGIALFRNMLGNGFRPDHVTFLSVLSSCVHAGA 366

Query: 348 IDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSR-DLVSWNSMVM 406
           ++ G +   ++        L    C++ + ++ G +D AY +   +  + D V W +++ 
Sbjct: 367 VETGHEFFDLMTYYNVTPSLKHYTCIVDLLSRAGRLDEAYELVKKIPRKPDSVMWGALLG 426

Query: 407 G 407
           G
Sbjct: 427 G 427



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 85/342 (24%), Positives = 151/342 (44%), Gaps = 57/342 (16%)

Query: 21  YSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMP--ERNVVSWTA 78
           Y +   +  A  +F     +NVVSYN M+ G+ +NG + +A+ LF++M    ++ +SW +
Sbjct: 91  YRRCADMGSALKIFSGFSVKNVVSYNTMIVGYCENGNVEKAKELFDQMELVGKDTISWNS 150

Query: 79  MICGLADAGRVCE----ARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIK- 133
           MI G AD    CE    A+  F+ + ER+  +WN ++ G     +L   + +   M    
Sbjct: 151 MISGYADNLLKCEDLKAAQLAFDGVTERDTATWNVLISGYACCNQLENIQNLIQKMKGDG 210

Query: 134 ---NVISWNAMIAGYVECCMMGEAIVLFEEME---------------------------- 162
              NV +WN +I+G+VE      A+ LF EM+                            
Sbjct: 211 FEPNVYTWNGIISGHVENGHNELALRLFTEMQTSSLRPDIYTVGIILPACARLATIARGK 270

Query: 163 -----------ERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNG 211
                      E +V    +++  Y + G ++    ++ R+   N+VS  AM+  +A +G
Sbjct: 271 QVHAHSIRQGYELDVHIGAALVDMYAKCGSIKHAMQVYNRISNPNLVSQNAMLTAYAMHG 330

Query: 212 FHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEIS--- 268
              E + LF  M G   NG   +  +  S+++  +  G +E     FD +   +      
Sbjct: 331 HGDEGIALFRNMLG---NGFRPDHVTFLSVLSSCVHAGAVETGHEFFDLMTYYNVTPSLK 387

Query: 269 -WTSMIDGYLSVGQVSNAYYLFHNMPDR-DAVAWTAMISGLV 308
            +T ++D     G++  AY L   +P + D+V W A++ G V
Sbjct: 388 HYTCIVDLLSRAGRLDEAYELVKKIPRKPDSVMWGALLGGCV 429



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 50/190 (26%), Positives = 87/190 (45%), Gaps = 25/190 (13%)

Query: 10  LVVHLTSSITK-YSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEM 68
           L VH+ +++   Y+K G I  A  ++  +   N+VS NAML+ +  +G   E   LF  M
Sbjct: 283 LDVHIGAALVDMYAKCGSIKHAMQVYNRISNPNLVSQNAMLTAYAMHGHGDEGIALFRNM 342

Query: 69  ------PERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVS----WNSMVVGLIRNG 118
                 P+   V++ +++     AG V    + F+ M   NV      +  +V  L R G
Sbjct: 343 LGNGFRPDH--VTFLSVLSSCVHAGAVETGHEFFDLMTYYNVTPSLKHYTCIVDLLSRAG 400

Query: 119 ELNEARKVFNSMPIK-NVISWNAMIAGYVECCMMGEAIVLFE-------EMEERNVVTWT 170
            L+EA ++   +P K + + W A++ G    C++   + L E       E+E  N   + 
Sbjct: 401 RLDEAYELVKKIPRKPDSVMWGALLGG----CVIWGNVELGEIAAESLIELEPNNTGNYV 456

Query: 171 SMISGYCRAG 180
            + + Y  AG
Sbjct: 457 LLANLYAYAG 466


>gi|345505210|gb|AEN99829.1| chlororespiratory reduction 4, partial [Barbarea verna]
          Length = 588

 Score =  286 bits (732), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 161/482 (33%), Positives = 259/482 (53%), Gaps = 46/482 (9%)

Query: 111 VVGL-IRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEM--EERNVV 167
           ++GL ++ G L  AR++F+ MP ++ +S+N+MI GYV+C ++G A  LF+ M  E +N++
Sbjct: 137 LIGLYLKCGCLGFARQIFDRMPQRDSVSYNSMIDGYVKCGLIGSARELFDLMPKEMKNLI 196

Query: 168 TWTSMISGYCRAGE-VEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGI 226
           +W SMISGY +  + V     LF  MP K+++SW                          
Sbjct: 197 SWNSMISGYAQTSDGVNIASKLFAEMPEKDLISW-------------------------- 230

Query: 227 CDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAY 286
                       NS+I+GY++ GR+E+A++LF  +P RD ++W +MIDGY  +G V  A 
Sbjct: 231 ------------NSLIDGYVKHGRMEDAKDLFYVMPRRDVVTWATMIDGYAKLGFVHKAK 278

Query: 287 YLFHNMPDRDAVAWTAMISGLVQNELFVEATYLF--MEMRAHGVPPLNATFSVLFGAAGA 344
            LF  MP RD VA+ +M++G VQN+  +EA  +F  ME  +H + P   T  ++  A   
Sbjct: 279 TLFDQMPHRDVVAYNSMMAGYVQNKYNMEALEIFSDMEKESH-LSPDETTLVIVLSAIAQ 337

Query: 345 TANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSM 404
              +     +H  +++ +      L   LI MY+KCG I  A  +F  + ++ +  WN+M
Sbjct: 338 LGRLSKAMDMHLYIVEKQFFLGGKLGVALIDMYSKCGSIQQAMLVFERIENKSIDHWNAM 397

Query: 405 VMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYK 464
           + G + HGL      +   +      P+ +TF+GIL+ACSH+GLV  G   F  M   +K
Sbjct: 398 IGGLAIHGLGESAFDMLLEIERRSIKPDDITFVGILNACSHSGLVKEGLLCFELMRRKHK 457

Query: 465 IQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHA 524
           I+P  +HY  M+++L R+G I+ A+  +  +P EP+  IW   L AC       E  E  
Sbjct: 458 IEPRLQHYGCMVDILSRSGSIELAKNLIEEMPMEPNDVIWRTFLTACSH-HKEFETGEVV 516

Query: 525 AKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQM 584
           AK L+     N  ++V+L N+YA+ G   +  ++R  M  + ++KVPGCSW+  +G +  
Sbjct: 517 AKHLILQAGYNPSSYVLLSNMYASFGMWKDARRVRTMMKERELQKVPGCSWIELDGRVHE 576

Query: 585 FL 586
           F 
Sbjct: 577 FF 578



 Score =  187 bits (475), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 126/438 (28%), Positives = 234/438 (53%), Gaps = 22/438 (5%)

Query: 22  SKRGFIDEAKALFQLMPQRNVVS----YNAMLSGFLQNGRLSEARRLFEEMPERNVVSWT 77
           S+ GF+ E   +   + +  + S     N ++  +L+ G L  AR++F+ MP+R+ VS+ 
Sbjct: 107 SRLGFVQEGMQIHGFLRKTGIWSDLFLQNCLIGLYLKCGCLGFARQIFDRMPQRDSVSYN 166

Query: 78  AMICGLADAGRVCEARKLFEEMPE--RNVVSWNSMVVGLIRNGE-LNEARKVFNSMPIKN 134
           +MI G    G +  AR+LF+ MP+  +N++SWNSM+ G  +  + +N A K+F  MP K+
Sbjct: 167 SMIDGYVKCGLIGSARELFDLMPKEMKNLISWNSMISGYAQTSDGVNIASKLFAEMPEKD 226

Query: 135 VISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPR 194
           +ISWN++I GYV+   M +A  LF  M  R+VVTW +MI GY + G V +   LF +MP 
Sbjct: 227 LISWNSLIDGYVKHGRMEDAKDLFYVMPRRDVVTWATMIDGYAKLGFVHKAKTLFDQMPH 286

Query: 195 KNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEA 254
           ++VV++ +M+ G+  N ++ E+L +F +M+   ++  + +  +   +++   + GRL +A
Sbjct: 287 RDVVAYNSMMAGYVQNKYNMEALEIFSDMEK--ESHLSPDETTLVIVLSAIAQLGRLSKA 344

Query: 255 QNLFDTVPVRDEI----SWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQN 310
            ++   +  +          ++ID Y   G +  A  +F  + ++    W AMI GL  +
Sbjct: 345 MDMHLYIVEKQFFLGGKLGVALIDMYSKCGSIQQAMLVFERIENKSIDHWNAMIGGLAIH 404

Query: 311 ELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCV-LMKTESESDLIL 369
            L   A  + +E+    + P + TF  +  A   +  +  G  + C  LM+ + + +  L
Sbjct: 405 GLGESAFDMLLEIERRSIKPDDITFVGILNACSHSGLVKEG--LLCFELMRRKHKIEPRL 462

Query: 370 EN--CLISMYAKCGVIDNAYNIFSNM-VSRDLVSWNSMVMGFSHHGLANETLKVFES--M 424
           ++  C++ + ++ G I+ A N+   M +  + V W + +   SHH    ET +V     +
Sbjct: 463 QHYGCMVDILSRSGSIELAKNLIEEMPMEPNDVIWRTFLTACSHHK-EFETGEVVAKHLI 521

Query: 425 LESGTHPNSVTFLGILSA 442
           L++G +P+S   L  + A
Sbjct: 522 LQAGYNPSSYVLLSNMYA 539



 Score =  125 bits (313), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 80/315 (25%), Positives = 163/315 (51%), Gaps = 50/315 (15%)

Query: 7   PKSL--VVHLTSSITKYSKRGF-IDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARR 63
           PK +  ++   S I+ Y++    ++ A  LF  MP+++++S+N+++ G++++GR+ +A+ 
Sbjct: 189 PKEMKNLISWNSMISGYAQTSDGVNIASKLFAEMPEKDLISWNSLIDGYVKHGRMEDAKD 248

Query: 64  LFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEA 123
           LF  MP R+VV+W  MI G A  G V +A+ LF++MP R+VV++NSM+ G ++N    EA
Sbjct: 249 LFYVMPRRDVVTWATMIDGYAKLGFVHKAKTLFDQMPHRDVVAYNSMMAGYVQNKYNMEA 308

Query: 124 RKVFNSMPIKNVISWN----------------------------------------AMIA 143
            ++F+ M  ++ +S +                                        A+I 
Sbjct: 309 LEIFSDMEKESHLSPDETTLVIVLSAIAQLGRLSKAMDMHLYIVEKQFFLGGKLGVALID 368

Query: 144 GYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNV----VS 199
            Y +C  + +A+++FE +E +++  W +MI G    G  E  + +   + R+++    ++
Sbjct: 369 MYSKCGSIQQAMLVFERIENKSIDHWNAMIGGLAIHGLGESAFDMLLEIERRSIKPDDIT 428

Query: 200 WTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFD 259
           +  ++   + +G  KE LL F  M+    +     +Q    M++   R G +E A+NL +
Sbjct: 429 FVGILNACSHSGLVKEGLLCFELMRR--KHKIEPRLQHYGCMVDILSRSGSIELAKNLIE 486

Query: 260 TVPVR-DEISWTSMI 273
            +P+  +++ W + +
Sbjct: 487 EMPMEPNDVIWRTFL 501



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 67/243 (27%), Positives = 109/243 (44%), Gaps = 22/243 (9%)

Query: 296 DAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIH 355
           D   W A+I           A   F  M  +GV     + S++  A      +  G QIH
Sbjct: 60  DPFLWNAVIKSHSHGVDPKRALIWFCLMLENGVSVDKFSLSLVLKACSRLGFVQEGMQIH 119

Query: 356 CVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLAN 415
             L KT   SDL L+NCLI +Y KCG +  A  IF  M  RD VS+NSM+ G+   GL  
Sbjct: 120 GFLRKTGIWSDLFLQNCLIGLYLKCGCLGFARQIFDRMPQRDSVSYNSMIDGYVKCGLIG 179

Query: 416 ETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEH---- 471
              ++F+ M +     N +++  ++S  +     S G  + + +F        PE     
Sbjct: 180 SARELFDLMPKE--MKNLISWNSMISGYAQT---SDGVNIASKLF-----AEMPEKDLIS 229

Query: 472 YVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIA-EHAAKRLLE 530
           + S+I+   + G++++A++    +P   D   W  ++      +G A++   H AK L +
Sbjct: 230 WNSLIDGYVKHGRMEDAKDLFYVMP-RRDVVTWATMI------DGYAKLGFVHKAKTLFD 282

Query: 531 LDP 533
             P
Sbjct: 283 QMP 285


>gi|356518777|ref|XP_003528054.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Glycine max]
          Length = 737

 Score =  286 bits (731), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 163/467 (34%), Positives = 262/467 (56%), Gaps = 18/467 (3%)

Query: 139 NAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVV 198
           N +I  Y +C     A   F ++  +   +W ++IS Y + G  +E + LF +MP++NVV
Sbjct: 49  NGLIDAYSKCGCEESAHKTFGDLPNKTTRSWNTLISFYSKTGFFDEAHNLFDKMPQRNVV 108

Query: 199 SWTAMIGG-FAW-NGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQN 256
           S+ ++I G   W    H  ++++ +E           NV   N++I+ Y + G    + +
Sbjct: 109 SYNSLISGNLQWLRQVHGVAVIVGMEW----------NVILNNALIDAYGKCGEPNLSFS 158

Query: 257 LFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEA 316
           +F  +P R+ +SWTSM+  Y    ++  A  +F +MP ++ V+WTA+++G V+N    EA
Sbjct: 159 VFCYMPERNVVSWTSMVVAYTRACRLDEACRVFKDMPVKNTVSWTALLTGFVRNGGCDEA 218

Query: 317 TYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLI---LENCL 373
             +F +M   GV P   TF  +  A    A I  G+Q+H  +++ +   +L    + N L
Sbjct: 219 FDVFKQMLEEGVRPSAPTFVSVIDACAQEALIGRGKQVHGQIIRGDKSGNLFNVYVCNAL 278

Query: 374 ISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNS 433
           I MYAKCG + +A N+F     RD+V+WN+++ GF+ +G   E+L VF  M+E+   PN 
Sbjct: 279 IDMYAKCGDMKSAENLFEMAPMRDVVTWNTLITGFAQNGHGEESLAVFRRMIEAKVEPNH 338

Query: 434 VTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVL 493
           VTFLG+LS C+HAGL + G +L + M   Y ++P  EHY  +I+LLGR  ++ EA   + 
Sbjct: 339 VTFLGVLSGCNHAGLDNEGLQLVDLMERQYGVKPKAEHYALLIDLLGRRNRLMEAMSLIE 398

Query: 494 RLPFEPDHRI--WGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGR 551
           ++P    + I  WGA+LGAC    GN ++A  AA++L EL+P N   +V+L NIYAASG+
Sbjct: 399 KVPDGIKNHIAVWGAVLGACR-VHGNLDLARKAAEKLFELEPENTGRYVMLANIYAASGK 457

Query: 552 HVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
                ++R  M  + + K P CS +        F++ DK   QV EI
Sbjct: 458 WGGAKRIRNVMKERCLEKEPACSRIELRNARHEFVAKDKFHPQVEEI 504



 Score =  149 bits (375), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 104/342 (30%), Positives = 165/342 (48%), Gaps = 49/342 (14%)

Query: 46  NAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVV 105
           N ++  + + G    A + F ++P +   SW  +I   +  G   EA  LF++MP+RNVV
Sbjct: 49  NGLIDAYSKCGCEESAHKTFGDLPNKTTRSWNTLISFYSKTGFFDEAHNLFDKMPQRNVV 108

Query: 106 SWNSMVVGLIRNGELNEARKVFNSMPIK----NVISWNAMIAGYVECCMMGEAIVLFEEM 161
           S+NS++     +G L   R+V     I     NVI  NA+I  Y +C     +  +F  M
Sbjct: 109 SYNSLI-----SGNLQWLRQVHGVAVIVGMEWNVILNNALIDAYGKCGEPNLSFSVFCYM 163

Query: 162 EERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFI 221
            ERNVV+WTSM+  Y RA  ++E   +F+ MP KN VSWTA++ GF  NG   E+  +F 
Sbjct: 164 PERNVVSWTSMVVAYTRACRLDEACRVFKDMPVKNTVSWTALLTGFVRNGGCDEAFDVFK 223

Query: 222 EM--KGI-------------C--------------------DNGNNCNVQSCNSMINGYI 246
           +M  +G+             C                     +GN  NV  CN++I+ Y 
Sbjct: 224 QMLEEGVRPSAPTFVSVIDACAQEALIGRGKQVHGQIIRGDKSGNLFNVYVCNALIDMYA 283

Query: 247 RFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNM----PDRDAVAWTA 302
           + G ++ A+NLF+  P+RD ++W ++I G+   G    +  +F  M     + + V +  
Sbjct: 284 KCGDMKSAENLFEMAPMRDVVTWNTLITGFAQNGHGEESLAVFRRMIEAKVEPNHVTFLG 343

Query: 303 MISGLVQNELFVEATYLFMEM-RAHGVPPLNATFSVLFGAAG 343
           ++SG     L  E   L   M R +GV P    +++L    G
Sbjct: 344 VLSGCNHAGLDNEGLQLVDLMERQYGVKPKAEHYALLIDLLG 385



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 90/259 (34%), Positives = 122/259 (47%), Gaps = 43/259 (16%)

Query: 7   PKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFE 66
           P        + I+ YSK GF DEA  LF  MPQRNVVSYN+++SG LQ  R      +  
Sbjct: 72  PNKTTRSWNTLISFYSKTGFFDEAHNLFDKMPQRNVVSYNSLISGNLQWLRQVHGVAVIV 131

Query: 67  EMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKV 126
            M E NV+   A+I      G    +  +F  MPERNVVSW SMVV   R   L+EA +V
Sbjct: 132 GM-EWNVILNNALIDAYGKCGEPNLSFSVFCYMPERNVVSWTSMVVAYTRACRLDEACRV 190

Query: 127 FNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEER---------------------- 164
           F  MP+KN +SW A++ G+V      EA  +F++M E                       
Sbjct: 191 FKDMPVKNTVSWTALLTGFVRNGGCDEAFDVFKQMLEEGVRPSAPTFVSVIDACAQEALI 250

Query: 165 --------------------NVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMI 204
                               NV    ++I  Y + G+++    LF   P ++VV+W  +I
Sbjct: 251 GRGKQVHGQIIRGDKSGNLFNVYVCNALIDMYAKCGDMKSAENLFEMAPMRDVVTWNTLI 310

Query: 205 GGFAWNGFHKESLLLFIEM 223
            GFA NG  +ESL +F  M
Sbjct: 311 TGFAQNGHGEESLAVFRRM 329



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 85/334 (25%), Positives = 140/334 (41%), Gaps = 62/334 (18%)

Query: 256 NLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVE 315
           +L  T    D      +ID Y   G   +A+  F ++P++   +W  +IS   +   F E
Sbjct: 35  HLIKTALFFDAFLANGLIDAYSKCGCEESAHKTFGDLPNKTTRSWNTLISFYSKTGFFDE 94

Query: 316 ATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLIS 375
           A  LF +M    V   N+  S          N+   RQ+H V +    E ++IL N LI 
Sbjct: 95  AHNLFDKMPQRNVVSYNSLIS---------GNLQWLRQVHGVAVIVGMEWNVILNNALID 145

Query: 376 MYAKCGVIDNAYNIFSNMVSRDLVSWNSMVM----------------------------- 406
            Y KCG  + ++++F  M  R++VSW SMV+                             
Sbjct: 146 AYGKCGEPNLSFSVFCYMPERNVVSWTSMVVAYTRACRLDEACRVFKDMPVKNTVSWTAL 205

Query: 407 --GFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNA------ 458
             GF  +G  +E   VF+ MLE G  P++ TF+ ++ AC+   L+ RG ++         
Sbjct: 206 LTGFVRNGGCDEAFDVFKQMLEEGVRPSAPTFVSVIDACAQEALIGRGKQVHGQIIRGDK 265

Query: 459 ---MFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCE 515
              +F+VY          ++I++  + G +K AE      P   D   W  L+   GF +
Sbjct: 266 SGNLFNVYVCN-------ALIDMYAKCGDMKSAENLFEMAPMR-DVVTWNTLI--TGFAQ 315

Query: 516 -GNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAA 548
            G+ E +    +R++E      P HV    + + 
Sbjct: 316 NGHGEESLAVFRRMIEAKV--EPNHVTFLGVLSG 347



 Score = 85.5 bits (210), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 64/216 (29%), Positives = 104/216 (48%), Gaps = 32/216 (14%)

Query: 1   MSERNHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSE 60
           M ERN     VV  TS +  Y++   +DEA  +F+ MP +N VS+ A+L+GF++NG   E
Sbjct: 163 MPERN-----VVSWTSMVVAYTRACRLDEACRVFKDMPVKNTVSWTALLTGFVRNGGCDE 217

Query: 61  ARRLFEEMPERNVVSWTAMICGLADA--------------GRVCEARK---LFEEMPERN 103
           A  +F++M E  V         + DA              G++    K   LF      N
Sbjct: 218 AFDVFKQMLEEGVRPSAPTFVSVIDACAQEALIGRGKQVHGQIIRGDKSGNLF------N 271

Query: 104 VVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEE 163
           V   N+++    + G++  A  +F   P+++V++WN +I G+ +     E++ +F  M E
Sbjct: 272 VYVCNALIDMYAKCGDMKSAENLFEMAPMRDVVTWNTLITGFAQNGHGEESLAVFRRMIE 331

Query: 164 RNV----VTWTSMISGYCRAGEVEEGYCLFRRMPRK 195
             V    VT+  ++SG   AG   EG  L   M R+
Sbjct: 332 AKVEPNHVTFLGVLSGCNHAGLDNEGLQLVDLMERQ 367



 Score = 55.8 bits (133), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 67/253 (26%), Positives = 108/253 (42%), Gaps = 39/253 (15%)

Query: 335 FSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMV 394
           +S L         + L   +H  L+KT    D  L N LI  Y+KCG  ++A+  F ++ 
Sbjct: 13  YSFLISKCITARRVKLANAVHGHLIKTALFFDAFLANGLIDAYSKCGCEESAHKTFGDLP 72

Query: 395 SRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSH--------A 446
           ++   SWN+++  +S  G  +E   +F+ M +     N V++  ++S            A
Sbjct: 73  NKTTRSWNTLISFYSKTGFFDEAHNLFDKMPQR----NVVSYNSLISGNLQWLRQVHGVA 128

Query: 447 GLVSRGWE--LFNAMFDVYKI--QPG---------PEH----YVSMINLLGRAGKIKEAE 489
            +V   W   L NA+ D Y    +P          PE     + SM+    RA ++ EA 
Sbjct: 129 VIVGMEWNVILNNALIDAYGKCGEPNLSFSVFCYMPERNVVSWTSMVVAYTRACRLDEAC 188

Query: 490 EFVLRLPFEPDHRIWGALLGACGFCE-GNAEIAEHAAKRLLE--LDPLNAPAHVVL---C 543
                +P + +   W ALL   GF   G  + A    K++LE  + P +AP  V +   C
Sbjct: 189 RVFKDMPVK-NTVSWTALL--TGFVRNGGCDEAFDVFKQMLEEGVRP-SAPTFVSVIDAC 244

Query: 544 NIYAASGRHVEEH 556
              A  GR  + H
Sbjct: 245 AQEALIGRGKQVH 257


>gi|255579244|ref|XP_002530468.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223530013|gb|EEF31938.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 801

 Score =  286 bits (731), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 179/587 (30%), Positives = 293/587 (49%), Gaps = 88/587 (14%)

Query: 6   HPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLF 65
           +P++ +      I +  K G + +A+ LF  MPQR+ VS+N+M+S +LQN ++ +A+ LF
Sbjct: 23  NPQAHLFQCNKKIQELGKLGRVKDARHLFDTMPQRDAVSWNSMISVYLQNNKIPDAKSLF 82

Query: 66  E-------------------------------EMPERNVVSWTAMICGLADAGRVCEARK 94
           +                                MPERNVVSW AM+ G    G +  ARK
Sbjct: 83  DAFEYKNVRTWTILLSGYAKAGLIEEAETFFRSMPERNVVSWNAMLAGFVQNGDLRNARK 142

Query: 95  LFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGE- 153
            F EMPERNV SWNS++ G  ++G + EAR++F+ M  ++ +SW  M +GYVE     E 
Sbjct: 143 CFYEMPERNVSSWNSIITGYCKSGLMKEARELFDRMEERSSVSWMVMASGYVEISQYREG 202

Query: 154 ------------------------AIVLFEEM--------------EERNVVTWTSMISG 175
                                   AI+ F ++               E +VV  T++++ 
Sbjct: 203 WCVFLMMMNSGVRPDQAVFVVGLSAIMGFNDLGMIGSFRTLVMKMGYEEDVVVATAILNA 262

Query: 176 YCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNV 235
           Y R G +++ +  F  MP +N  S T+MI  F+  G   +++ L+ +     D       
Sbjct: 263 YARCGSLDDAFKFFESMPARNEYSLTSMIAAFSQRGRLDDAIALYEKDSKQGD------- 315

Query: 236 QSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDR 295
            +  ++I  Y+  GR++EA+++FD +   + ++W +M+ GY   G +  A  +F  MP R
Sbjct: 316 ATRTTIIAAYMHNGRIDEAKHIFDEIVNPNVVAWNAMLGGYAQNGMLEEAKAIFLQMPVR 375

Query: 296 DAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIH 355
           +AV+W AMI G VQN    E   LF E+   G+ P ++ F+    A     ++++G+QIH
Sbjct: 376 NAVSWAAMIGGFVQNGNGKEGLKLFTELHRTGMIPTHSCFTSALFACANIGDVEIGKQIH 435

Query: 356 CVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLAN 415
            + +K   +S+  + N LISMYAKC  +++  ++F++M  RD VSWNS+V G S + L N
Sbjct: 436 SLSIKMRCQSNPFVGNGLISMYAKCNSVEDVSHVFNSMNVRDTVSWNSLVSGLSWNYLLN 495

Query: 416 ETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSM 475
           +    F++M       ++V++  I+SA  HA      W+LF  M     ++P      S+
Sbjct: 496 DAQNTFDNM----PTRDAVSWAAIISAHVHADQGEIAWQLFLDMLSA-GLKPNDLTITSL 550

Query: 476 INLLGRAGKIKEAEEF---VLRLPFEPDHRIWGALLG---ACGFCEG 516
           ++  G  G  K  E+F   VL+  F     +  AL+     CG  +G
Sbjct: 551 LSACGNLGVTKLGEQFHALVLKHGFNSCLHVCNALISMYFKCGNVDG 597



 Score =  274 bits (700), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 176/552 (31%), Positives = 267/552 (48%), Gaps = 103/552 (18%)

Query: 4   RNHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARR 63
           R+ P+  VV   + +  + + G +  A+  F  MP+RNV S+N++++G+ ++G + EAR 
Sbjct: 114 RSMPERNVVSWNAMLAGFVQNGDLRNARKCFYEMPERNVSSWNSIITGYCKSGLMKEARE 173

Query: 64  LFEEMPERNVVSWTAM--------------------------------------ICGLAD 85
           LF+ M ER+ VSW  M                                      I G  D
Sbjct: 174 LFDRMEERSSVSWMVMASGYVEISQYREGWCVFLMMMNSGVRPDQAVFVVGLSAIMGFND 233

Query: 86  AGRVCEARKLFEEMP-ERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAG 144
            G +   R L  +M  E +VV   +++    R G L++A K F SMP +N  S  +MIA 
Sbjct: 234 LGMIGSFRTLVMKMGYEEDVVVATAILNAYARCGSLDDAFKFFESMPARNEYSLTSMIAA 293

Query: 145 YVECCMMGEAIVL-------------------------------FEEMEERNVVTWTSMI 173
           + +   + +AI L                               F+E+   NVV W +M+
Sbjct: 294 FSQRGRLDDAIALYEKDSKQGDATRTTIIAAYMHNGRIDEAKHIFDEIVNPNVVAWNAML 353

Query: 174 SGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGI------- 226
            GY + G +EE   +F +MP +N VSW AMIGGF  NG  KE L LF E+          
Sbjct: 354 GGYAQNGMLEEAKAIFLQMPVRNAVSWAAMIGGFVQNGNGKEGLKLFTELHRTGMIPTHS 413

Query: 227 --------CDNGNNCNV----------QSC-------NSMINGYIRFGRLEEAQNLFDTV 261
                   C N  +  +            C       N +I+ Y +   +E+  ++F+++
Sbjct: 414 CFTSALFACANIGDVEIGKQIHSLSIKMRCQSNPFVGNGLISMYAKCNSVEDVSHVFNSM 473

Query: 262 PVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFM 321
            VRD +SW S++ G      +++A   F NMP RDAV+W A+IS  V  +    A  LF+
Sbjct: 474 NVRDTVSWNSLVSGLSWNYLLNDAQNTFDNMPTRDAVSWAAIISAHVHADQGEIAWQLFL 533

Query: 322 EMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCG 381
           +M + G+ P + T + L  A G      LG Q H +++K    S L + N LISMY KCG
Sbjct: 534 DMLSAGLKPNDLTITSLLSACGNLGVTKLGEQFHALVLKHGFNSCLHVCNALISMYFKCG 593

Query: 382 VIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILS 441
            +D  Y +F  M+ RD+V+WN+++ G + +GL  E  KVFE M E+   P+ ++FLG+LS
Sbjct: 594 NVDGLY-VFEEMIDRDIVTWNTVLAGCAQNGLCKEATKVFEQMAEAEVFPDEISFLGVLS 652

Query: 442 ACSHAGLVSRGW 453
           ACSHAG + R W
Sbjct: 653 ACSHAGGIVRAW 664


>gi|359486281|ref|XP_003633424.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g45350, chloroplastic-like [Vitis vinifera]
          Length = 704

 Score =  286 bits (731), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 180/591 (30%), Positives = 303/591 (51%), Gaps = 57/591 (9%)

Query: 22  SKRGFIDEAKALF-------QLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNV- 73
           S +  ++ A+ LF       +   Q N   +NA++  F       E   +F  M E  V 
Sbjct: 54  SHKPLVEFARYLFMSRHFGRKYRKQDNSFIWNAIIKSFSHKEDPREVFVIFNLMLESGVC 113

Query: 74  ---VSWTAMICGLADAGRVCEARKLFEEMPE----RNVVSWNSMVVGLIRNGELNEARKV 126
               S++ ++   +  G + E  ++   + +     +V   N ++   +R G L   R++
Sbjct: 114 VDKFSFSLVLKACSRLGLIKEGMQIHGLLGKMEIGSDVFLQNCLMCLYLRCGCLGIVRQL 173

Query: 127 FNSMPIKNVISWNAMIAGYVECCMMGEAIVLFE--EMEERNVVTWTSMISGYCRAGE-VE 183
           F+ M  K+ +S+N+MI GYV+  M+  A  LF+   ME++ +++W SMIS Y R+ E ++
Sbjct: 174 FDRMMKKDSVSFNSMIDGYVKHGMVKSAWELFDVMPMEQKILISWNSMISEYARSEERLK 233

Query: 184 EGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMIN 243
             + LF  MP+K+++SW                                      NSMIN
Sbjct: 234 VAWELFEEMPKKDLISW--------------------------------------NSMIN 255

Query: 244 GYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAM 303
           G ++ G++E   +LF+ +P R  +S  +M++G+  +G++  A  LF  MP+ D ++  AM
Sbjct: 256 GCVKCGKMENDHHLFNRMPKRXVVSXANMVNGHAKLGEIDIARGLFVEMPEMDVISCNAM 315

Query: 304 ISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTES 363
           ++  VQN   +E+   F +M +  +   NAT  +   A     + D G  +HC +     
Sbjct: 316 MARYVQNGYLMESLKNFHDMLSKELFLDNATLLITLSAIAQLGHFDEGVALHCYIEDNGF 375

Query: 364 ESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFES 423
                L   LI  YAKCG IDNA ++F ++ ++ +  WN+++ G + HGL     ++F  
Sbjct: 376 SLSEKLGVALIDTYAKCGSIDNALSVFEDIDNKSIDHWNAILSGLAIHGLGEVAFELFME 435

Query: 424 MLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAG 483
           M +    PN +TF+G+L+AC+HAGLV  G   F  M  V K++P  +HYV M+++LG+AG
Sbjct: 436 MEKLFVKPNDITFIGVLNACNHAGLVKEGLMCFELMKRVDKVEPKLQHYVCMVDILGQAG 495

Query: 484 KIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLC 543
            ++E ++FV ++  EP+  +W  LL AC   E N  I E  AK L+ +D  N  ++V+L 
Sbjct: 496 HVEETKKFVEKMSIEPNDVVWRTLLSACRNHE-NFTIGEPVAKHLISVDSYNLSSYVLLS 554

Query: 544 NIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQ 594
           NIYA  G   + H++RM M  + ++K+PGCS +   G +  F   DK   Q
Sbjct: 555 NIYAGFGIWNDVHRIRMMMKQRDLKKIPGCSQIELEGNVHKFFVRDKSHPQ 605



 Score =  122 bits (305), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 105/404 (25%), Positives = 192/404 (47%), Gaps = 51/404 (12%)

Query: 21  YSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMP--ERNVVSWTA 78
           Y + G +   + LF  M +++ VS+N+M+ G++++G +  A  LF+ MP  ++ ++SW +
Sbjct: 161 YLRCGCLGIVRQLFDRMMKKDSVSFNSMIDGYVKHGMVKSAWELFDVMPMEQKILISWNS 220

Query: 79  MICGLADA-GRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVIS 137
           MI   A +  R+  A +LFEEMP+++++SWNSM+ G ++ G++     +FN MP + V+S
Sbjct: 221 MISEYARSEERLKVAWELFEEMPKKDLISWNSMINGCVKCGKMENDHHLFNRMPKRXVVS 280

Query: 138 WNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNV 197
              M+ G+ +   +  A  LF EM E +V++  +M++ Y + G + E    F  M  K +
Sbjct: 281 XANMVNGHAKLGEIDIARGLFVEMPEMDVISCNAMMARYVQNGYLMESLKNFHDMLSKEL 340

Query: 198 ----VSWTAMIGGFAWNGFHKESLLL--FIEMKGICDNGNNCNVQSCNSMINGYIRFGRL 251
                +    +   A  G   E + L  +IE     DNG + + +   ++I+ Y + G  
Sbjct: 341 FLDNATLLITLSAIAQLGHFDEGVALHCYIE-----DNGFSLSEKLGVALIDTYAKCGS- 394

Query: 252 EEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNE 311
                                ID  LSV         F ++ ++    W A++SGL  + 
Sbjct: 395 ---------------------IDNALSV---------FEDIDNKSIDHWNAILSGLAIHG 424

Query: 312 LFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCV-LMKTESESDLILE 370
           L   A  LFMEM    V P + TF  +  A      +  G  + C  LMK   + +  L+
Sbjct: 425 LGEVAFELFMEMEKLFVKPNDITFIGVLNACNHAGLVKEG--LMCFELMKRVDKVEPKLQ 482

Query: 371 N--CLISMYAKCGVIDNAYNIFSNM-VSRDLVSWNSMVMGFSHH 411
           +  C++ +  + G ++        M +  + V W +++    +H
Sbjct: 483 HYVCMVDILGQAGHVEETKKFVEKMSIEPNDVVWRTLLSACRNH 526



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 124/447 (27%), Positives = 210/447 (46%), Gaps = 44/447 (9%)

Query: 12  VHLTSSITKYSKRGFIDEAKALFQLMP--QRNVVSYNAMLSGFLQN-GRLSEARRLFEEM 68
           V   S I  Y K G +  A  LF +MP  Q+ ++S+N+M+S + ++  RL  A  LFEEM
Sbjct: 183 VSFNSMIDGYVKHGMVKSAWELFDVMPMEQKILISWNSMISEYARSEERLKVAWELFEEM 242

Query: 69  PERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFN 128
           P+++++SW +MI G    G++     LF  MP+R VVS  +MV G  + GE++ AR +F 
Sbjct: 243 PKKDLISWNSMINGCVKCGKMENDHHLFNRMPKRXVVSXANMVNGHAKLGEIDIARGLFV 302

Query: 129 SMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNV----VTWTSMISGYCRAGEVEE 184
            MP  +VIS NAM+A YV+   + E++  F +M  + +     T    +S   + G  +E
Sbjct: 303 EMPEMDVISCNAMMARYVQNGYLMESLKNFHDMLSKELFLDNATLLITLSAIAQLGHFDE 362

Query: 185 GYCLFRRMPRKNVVSWT-----AMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCN 239
           G  L   +   N  S +     A+I  +A  G    +L +F       ++ +N ++   N
Sbjct: 363 GVALHCYI-EDNGFSLSEKLGVALIDTYAKCGSIDNALSVF-------EDIDNKSIDHWN 414

Query: 240 SMINGYIRFGRLEEAQNLF---DTVPVR-DEISWTSMIDGYLSVGQVSNAYYLFHNMPDR 295
           ++++G    G  E A  LF   + + V+ ++I++  +++     G V      F  M   
Sbjct: 415 AILSGLAIHGLGEVAFELFMEMEKLFVKPNDITFIGVLNACNHAGLVKEGLMCFELMKRV 474

Query: 296 DAVA-----WTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDL 350
           D V      +  M+  L Q    VE T  F+E  +  + P +  +  L  A     N  +
Sbjct: 475 DKVEPKLQHYVCMVDILGQAG-HVEETKKFVEKMS--IEPNDVVWRTLLSACRNHENFTI 531

Query: 351 GRQI--HCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGF 408
           G  +  H + + + + S  +L   L ++YA  G+ ++ + I   M  RDL      + G 
Sbjct: 532 GEPVAKHLISVDSYNLSSYVL---LSNIYAGFGIWNDVHRIRMMMKQRDL----KKIPGC 584

Query: 409 SHHGLANETLKVFESMLESGTHPNSVT 435
           S   L     K F   +   +HP + T
Sbjct: 585 SQIELEGNVHKFF---VRDKSHPQAKT 608



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 80/322 (24%), Positives = 154/322 (47%), Gaps = 18/322 (5%)

Query: 8   KSLVVHLTSSITKYSK-RGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFE 66
           + +++   S I++Y++    +  A  LF+ MP+++++S+N+M++G ++ G++     LF 
Sbjct: 212 QKILISWNSMISEYARSEERLKVAWELFEEMPKKDLISWNSMINGCVKCGKMENDHHLFN 271

Query: 67  EMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKV 126
            MP+R VVS   M+ G A  G +  AR LF EMPE +V+S N+M+   ++NG L E+ K 
Sbjct: 272 RMPKRXVVSXANMVNGHAKLGEIDIARGLFVEMPEMDVISCNAMMARYVQNGYLMESLKN 331

Query: 127 FNSMPIKNVISWNA----MIAGYVECCMMGEAIVLFEEMEERNVV----TWTSMISGYCR 178
           F+ M  K +   NA     ++   +     E + L   +E+           ++I  Y +
Sbjct: 332 FHDMLSKELFLDNATLLITLSAIAQLGHFDEGVALHCYIEDNGFSLSEKLGVALIDTYAK 391

Query: 179 AGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSC 238
            G ++    +F  +  K++  W A++ G A +G  + +  LF+EM+ +    N+      
Sbjct: 392 CGSIDNALSVFEDIDNKSIDHWNAILSGLAIHGLGEVAFELFMEMEKLFVKPNDITFI-- 449

Query: 239 NSMINGYIRFGRLEEAQNLFDTVPVRDEIS-----WTSMIDGYLSVGQVSNAYYLFHNMP 293
             ++N     G ++E    F+ +   D++      +  M+D     G V         M 
Sbjct: 450 -GVLNACNHAGLVKEGLMCFELMKRVDKVEPKLQHYVCMVDILGQAGHVEETKKFVEKMS 508

Query: 294 -DRDAVAWTAMISGLVQNELFV 314
            + + V W  ++S    +E F 
Sbjct: 509 IEPNDVVWRTLLSACRNHENFT 530



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 67/281 (23%), Positives = 132/281 (46%), Gaps = 17/281 (6%)

Query: 7   PKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFE 66
           PK  ++   S I    K G ++    LF  MP+R VVS   M++G  + G +  AR LF 
Sbjct: 243 PKKDLISWNSMINGCVKCGKMENDHHLFNRMPKRXVVSXANMVNGHAKLGEIDIARGLFV 302

Query: 67  EMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVV----GLIRNGELNE 122
           EMPE +V+S  AM+      G + E+ K F +M  + +   N+ ++     + + G  +E
Sbjct: 303 EMPEMDVISCNAMMARYVQNGYLMESLKNFHDMLSKELFLDNATLLITLSAIAQLGHFDE 362

Query: 123 ARKVF-----NSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYC 177
              +      N   +   +   A+I  Y +C  +  A+ +FE+++ +++  W +++SG  
Sbjct: 363 GVALHCYIEDNGFSLSEKLGV-ALIDTYAKCGSIDNALSVFEDIDNKSIDHWNAILSGLA 421

Query: 178 RAGEVEEGYCLFRRMP----RKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNC 233
             G  E  + LF  M     + N +++  ++      G  KE L+ F  MK +  +    
Sbjct: 422 IHGLGEVAFELFMEMEKLFVKPNDITFIGVLNACNHAGLVKEGLMCFELMKRV--DKVEP 479

Query: 234 NVQSCNSMINGYIRFGRLEEAQNLFDTVPVR-DEISWTSMI 273
            +Q    M++   + G +EE +   + + +  +++ W +++
Sbjct: 480 KLQHYVCMVDILGQAGHVEETKKFVEKMSIEPNDVVWRTLL 520


>gi|449464496|ref|XP_004149965.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Cucumis sativus]
 gi|449497665|ref|XP_004160467.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Cucumis sativus]
          Length = 938

 Score =  286 bits (731), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 189/628 (30%), Positives = 309/628 (49%), Gaps = 59/628 (9%)

Query: 25  GFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEM----PERNVVSWTAM- 79
           G I+EA ++F  M +R+ +S+N+++S   QN    E+ R F  M     E N  + + + 
Sbjct: 209 GDINEACSIFNEMNERDTISWNSIISANAQNTLHEESFRYFHWMRLVHEEINYTTLSILL 268

Query: 80  -ICG---------------------------------LADAGRVCEARKLFEEMPERNVV 105
            ICG                                  +DAGR  +A  +F  MPER+++
Sbjct: 269 SICGSVDYLKWGKGVHGLAVKYGLESNICLCNTLLSVYSDAGRSKDAELIFRRMPERDLI 328

Query: 106 SWNSMVVGLIRNGELNEARKVFNSMP-IKNVISWNAMIAGYVEC----------CMMGEA 154
           SWNSM+   +++G    A KVF  M  +K  I++    +    C           + G  
Sbjct: 329 SWNSMLACYVQDGRCLCALKVFAEMLWMKKEINYVTFTSALAACLDPEFFTNGKILHGFV 388

Query: 155 IVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHK 214
           +VL  + E   ++   ++I+ Y +  ++ E   +F+RMP+ + V+W A+IGGFA N    
Sbjct: 389 VVLGLQDE---LIIGNTLITFYGKCHKMAEAKKVFQRMPKLDKVTWNALIGGFANNAELN 445

Query: 215 ESLLLFIEMKGICDNGNN----CNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWT 270
           E++  F  M+    +G +     N+          I++G    A  +     + D+   +
Sbjct: 446 EAVAAFKLMREGSTSGVDYITIVNILGSCLTHEDLIKYGIPIHAHTVVTGFDL-DQHVQS 504

Query: 271 SMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPP 330
           S+I  Y   G + ++ Y+F  +  + +  W A+I+   +     EA  L + MR+ G+  
Sbjct: 505 SLITMYAKCGDLHSSSYIFDQLVFKTSSVWNAIIAANARYGFGEEALKLVVRMRSAGIEF 564

Query: 331 LNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIF 390
               FS     A   A ++ G+Q+H   +K   E D  + N  + MY KCG +D+A  I 
Sbjct: 565 DQFNFSTALSVAADLAMLEEGQQLHGSTIKLGFELDHFIINAAMDMYGKCGELDDALRIL 624

Query: 391 SNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVS 450
                R  +SWN+++   + HG  ++  + F  ML+ G  PN V+F+ +LSACSH GLV 
Sbjct: 625 PQPTDRSRLSWNTLISISARHGQFHKAKETFHDMLKLGVKPNHVSFVCLLSACSHGGLVD 684

Query: 451 RGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGA 510
            G   + +M  VY IQPG EH V MI+LLGR+G++ EAE F+  +P  P+  +W +LL +
Sbjct: 685 EGLAYYASMTSVYGIQPGIEHCVCMIDLLGRSGRLVEAEAFITEMPIPPNDLVWRSLLAS 744

Query: 511 CGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKV 570
           C     N ++   AAK LLELDP +  A+V+  N++A  GR  +   +R  MG   ++K 
Sbjct: 745 CRIYR-NLDLGRKAAKHLLELDPSDDSAYVLYSNVFATIGRWEDVEDVRGQMGAHKIQKK 803

Query: 571 PGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
           P  SW+   G I +F  GD+   Q+ +I
Sbjct: 804 PAHSWVKWKGNISIFGMGDQTHPQMEQI 831



 Score =  172 bits (436), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 143/480 (29%), Positives = 220/480 (45%), Gaps = 22/480 (4%)

Query: 87  GRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYV 146
           GR+  A+ +F+ M ERN  SWN M+ G +R G   EA   F  +    +     MIA  V
Sbjct: 6   GRINYAQLVFDRMSERNEASWNHMMSGYVRVGSYVEAVLFFRDICGIGIKPSGFMIASLV 65

Query: 147 ECC----MMGEAIVLFEEMEER-----NVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNV 197
             C    +M +    F     +     +V   TS +  Y   G V     +F  MP +NV
Sbjct: 66  TACNKSSIMAKEGFQFHGFAIKCGLIYDVFVGTSFVHFYASYGIVSNAQKMFNEMPDRNV 125

Query: 198 VSWTAMIGGFAWNGFHKESLLLFIEMK--GICDNGNNCN--VQSCNSMINGYIRFGRLEE 253
           VSWT+++  ++ NG  KE +  +  M+  GIC N NN    + SC  +++  +    L  
Sbjct: 126 VSWTSLMVSYSDNGSKKEVINTYKRMRHEGICCNENNIALVISSCGFLMDIILGHQLLGH 185

Query: 254 AQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELF 313
           A        V    S   M  G    G ++ A  +F+ M +RD ++W ++IS   QN L 
Sbjct: 186 ALKFGLETKVSAANSLIFMFGG---CGDINEACSIFNEMNERDTISWNSIISANAQNTLH 242

Query: 314 VEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCL 373
            E+   F  MR         T S+L    G+   +  G+ +H + +K   ES++ L N L
Sbjct: 243 EESFRYFHWMRLVHEEINYTTLSILLSICGSVDYLKWGKGVHGLAVKYGLESNICLCNTL 302

Query: 374 ISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNS 433
           +S+Y+  G   +A  IF  M  RDL+SWNSM+  +   G     LKVF  ML      N 
Sbjct: 303 LSVYSDAGRSKDAELIFRRMPERDLISWNSMLACYVQDGRCLCALKVFAEMLWMKKEINY 362

Query: 434 VTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVL 493
           VTF   L+AC      + G ++ +    V  +Q       ++I   G+  K+ EA++   
Sbjct: 363 VTFTSALAACLDPEFFTNG-KILHGFVVVLGLQDELIIGNTLITFYGKCHKMAEAKKVFQ 421

Query: 494 RLPFEPDHRIWGALLGACGFCEGNAEIAEH-AAKRLLELDPLNAPAHVVLCNIYAASGRH 552
           R+P + D   W AL+G  GF   NAE+ E  AA +L+     +   ++ + NI  +   H
Sbjct: 422 RMP-KLDKVTWNALIG--GFAN-NAELNEAVAAFKLMREGSTSGVDYITIVNILGSCLTH 477



 Score =  152 bits (384), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 148/604 (24%), Positives = 243/604 (40%), Gaps = 126/604 (20%)

Query: 21  YSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMI 80
           YSK G I+ A+ +F  M +RN  S+N M+SG+++ G   EA   F ++    +     MI
Sbjct: 2   YSKFGRINYAQLVFDRMSERNEASWNHMMSGYVRVGSYVEAVLFFRDICGIGIKPSGFMI 61

Query: 81  --------------------------CGL--------------ADAGRVCEARKLFEEMP 100
                                     CGL              A  G V  A+K+F EMP
Sbjct: 62  ASLVTACNKSSIMAKEGFQFHGFAIKCGLIYDVFVGTSFVHFYASYGIVSNAQKMFNEMP 121

Query: 101 ERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEE 160
           +RNVVSW S++V    NG   E    +  M  + +      IA  +  C     I+L  +
Sbjct: 122 DRNVVSWTSLMVSYSDNGSKKEVINTYKRMRHEGICCNENNIALVISSCGFLMDIILGHQ 181

Query: 161 M--------EERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGF 212
           +         E  V    S+I  +   G++ E   +F  M  ++ +SW ++I   A N  
Sbjct: 182 LLGHALKFGLETKVSAANSLIFMFGGCGDINEACSIFNEMNERDTISWNSIISANAQNTL 241

Query: 213 HKESLLLFIEMK---------------GICDN-----------------GNNCNVQSCNS 240
           H+ES   F  M+                IC +                 G   N+  CN+
Sbjct: 242 HEESFRYFHWMRLVHEEINYTTLSILLSICGSVDYLKWGKGVHGLAVKYGLESNICLCNT 301

Query: 241 MINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNM----PDRD 296
           +++ Y   GR ++A+ +F  +P RD ISW SM+  Y+  G+   A  +F  M     + +
Sbjct: 302 LLSVYSDAGRSKDAELIFRRMPERDLISWNSMLACYVQDGRCLCALKVFAEMLWMKKEIN 361

Query: 297 AVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHC 356
            V +T+ ++  +  E F     L      HG       F V+ G                
Sbjct: 362 YVTFTSALAACLDPEFFTNGKIL------HG-------FVVVLGL--------------- 393

Query: 357 VLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANE 416
                  + +LI+ N LI+ Y KC  +  A  +F  M   D V+WN+++ GF+++   NE
Sbjct: 394 -------QDELIIGNTLITFYGKCHKMAEAKKVFQRMPKLDKVTWNALIGGFANNAELNE 446

Query: 417 TLKVFESMLESGTHP-NSVTFLGILSAC-SHAGLVSRGWELFNAMFDVYKIQPGPEHYVS 474
            +  F+ M E  T   + +T + IL +C +H  L+  G  + +A   V           S
Sbjct: 447 AVAAFKLMREGSTSGVDYITIVNILGSCLTHEDLIKYGIPI-HAHTVVTGFDLDQHVQSS 505

Query: 475 MINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGA---CGFCEGNAEIAEHAAKRLLEL 531
           +I +  + G +  +     +L F+    +W A++ A    GF E   ++        +E 
Sbjct: 506 LITMYAKCGDLHSSSYIFDQLVFKTS-SVWNAIIAANARYGFGEEALKLVVRMRSAGIEF 564

Query: 532 DPLN 535
           D  N
Sbjct: 565 DQFN 568



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 96/387 (24%), Positives = 174/387 (44%), Gaps = 56/387 (14%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEM----PERNV 73
           ++ YS  G   +A+ +F+ MP+R+++S+N+ML+ ++Q+GR   A ++F EM     E N 
Sbjct: 303 LSVYSDAGRSKDAELIFRRMPERDLISWNSMLACYVQDGRCLCALKVFAEMLWMKKEINY 362

Query: 74  VSWTA---------------------MICGLAD--------------AGRVCEARKLFEE 98
           V++T+                     ++ GL D                ++ EA+K+F+ 
Sbjct: 363 VTFTSALAACLDPEFFTNGKILHGFVVVLGLQDELIIGNTLITFYGKCHKMAEAKKVFQR 422

Query: 99  MPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAM-IAGYVECCMMGEAIVL 157
           MP+ + V+WN+++ G   N ELNEA   F  M   +    + + I   +  C+  E ++ 
Sbjct: 423 MPKLDKVTWNALIGGFANNAELNEAVAAFKLMREGSTSGVDYITIVNILGSCLTHEDLIK 482

Query: 158 FE-EMEERNVVT--------WTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFA 208
           +   +    VVT         +S+I+ Y + G++     +F ++  K    W A+I   A
Sbjct: 483 YGIPIHAHTVVTGFDLDQHVQSSLITMYAKCGDLHSSSYIFDQLVFKTSSVWNAIIAANA 542

Query: 209 WNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLF-DTVPV---R 264
             GF +E+L L + M+      +  N  +  S+         LEE Q L   T+ +    
Sbjct: 543 RYGFGEEALKLVVRMRSAGIEFDQFNFSTALSVA---ADLAMLEEGQQLHGSTIKLGFEL 599

Query: 265 DEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMR 324
           D     + +D Y   G++ +A  +     DR  ++W  +IS   ++  F +A   F +M 
Sbjct: 600 DHFIINAAMDMYGKCGELDDALRILPQPTDRSRLSWNTLISISARHGQFHKAKETFHDML 659

Query: 325 AHGVPPLNATFSVLFGAAGATANIDLG 351
             GV P + +F  L  A      +D G
Sbjct: 660 KLGVKPNHVSFVCLLSACSHGGLVDEG 686



 Score = 42.7 bits (99), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 31/125 (24%), Positives = 58/125 (46%), Gaps = 8/125 (6%)

Query: 376 MYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVT 435
           MY+K G I+ A  +F  M  R+  SWN M+ G+   G   E +  F  +   G  P+   
Sbjct: 1   MYSKFGRINYAQLVFDRMSERNEASWNHMMSGYVRVGSYVEAVLFFRDICGIGIKPSGFM 60

Query: 436 FLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYV----SMINLLGRAGKIKEAEEF 491
              +++AC+ + ++++  E F   F  + I+ G  + V    S ++     G +  A++ 
Sbjct: 61  IASLVTACNKSSIMAK--EGFQ--FHGFAIKCGLIYDVFVGTSFVHFYASYGIVSNAQKM 116

Query: 492 VLRLP 496
              +P
Sbjct: 117 FNEMP 121



 Score = 42.4 bits (98), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 33/140 (23%), Positives = 65/140 (46%), Gaps = 10/140 (7%)

Query: 14  LTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNV 73
           + +++  Y K G +D+A  +      R+ +S+N ++S   ++G+  +A+  F +M +  V
Sbjct: 604 INAAMDMYGKCGELDDALRILPQPTDRSRLSWNTLISISARHGQFHKAKETFHDMLKLGV 663

Query: 74  ----VSWTAMICGLADAGRVCEARKLFEEMP-----ERNVVSWNSMVVGLIRNGELNEAR 124
               VS+  ++   +  G V E    +  M      +  +     M+  L R+G L EA 
Sbjct: 664 KPNHVSFVCLLSACSHGGLVDEGLAYYASMTSVYGIQPGIEHCVCMIDLLGRSGRLVEAE 723

Query: 125 KVFNSMPI-KNVISWNAMIA 143
                MPI  N + W +++A
Sbjct: 724 AFITEMPIPPNDLVWRSLLA 743


>gi|413944078|gb|AFW76727.1| hypothetical protein ZEAMMB73_427029 [Zea mays]
          Length = 794

 Score =  286 bits (731), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 177/545 (32%), Positives = 285/545 (52%), Gaps = 14/545 (2%)

Query: 57  RLSEARRLFEEMPE-RNVVSWTAMICGLADAGRVCEARKLFEE-MPERNVVSWNSMVVGL 114
           RL+ A  +  +  E  N      M+ G   AG+   A  LF   + +R  V   ++V  +
Sbjct: 80  RLAHAAAVLAQCTEGPNAYMLATMMRGFLRAGKPTHALTLFRRVLRDRLAVDARTIVFAV 139

Query: 115 IRNGELNEARKVFNSMPIK------NVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVT 168
                 +   +  + +  K      +V++ NA++  Y    ++ +A  LF+EM +R+VV+
Sbjct: 140 KAAATSSSPTEAIHCVAFKRGFIGQSVLAGNALVHMYTSSMLLPDARKLFDEMADRDVVS 199

Query: 169 WTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEM---KG 225
           WT++I GY R G  +E + +F RM     V W   +   A      +  LL +     + 
Sbjct: 200 WTTLIDGYARGGLPDEAWRVFCRMVVAESV-WPNEVTLVAAASAAGQMGLLGLGRTVHQC 258

Query: 226 ICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNA 285
           I ++G   +V   N++++ + + G +  A+ +FD +P++D  SWTSM+  Y   G + NA
Sbjct: 259 IVESGGRMSVNLENALVDMFGKCGCVAAAKEVFDGMPIKDVYSWTSMVSAYAKCGDLENA 318

Query: 286 YYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGAT 345
             LF  +P+R+ V+W+ M++      +  EA  +F +M A GV P++AT   +  A    
Sbjct: 319 AKLFKEIPNRNVVSWSCMVAAYSHANMPDEAIRIFNDMIAAGVEPIDATLVSVLSACAQL 378

Query: 346 ANIDLGRQIH-CVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSM 404
            ++D+G  ++   ++  + E    L N  I M+AKCG +  A  +FSNM  +++VSWN+M
Sbjct: 379 CSLDVGTWLYDTYIVSHKVELTPNLSNAFIDMFAKCGDVGAASRLFSNMEDKNVVSWNTM 438

Query: 405 VMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYK 464
           +M    HG   E L +F+    +G  P+  T++G+LSACSH GLVS G   F  M  VY 
Sbjct: 439 IMAHGLHGQPEEALHLFQEFKGNGILPDEATYIGVLSACSHGGLVSEGRCHFKEMKIVYG 498

Query: 465 IQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHA 524
           I+P  EHY  MI+LLG+ G ++EA E    +P   D   WGALL AC    GN EI + A
Sbjct: 499 IEPRAEHYACMIDLLGKVGLLQEAFEVARSMPVGADEAGWGALLNACRM-HGNVEIGKCA 557

Query: 525 AKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQM 584
           A +L  LDP ++  +V++  IYA+  +  +   LR  M  + V+K PGCS +  +G    
Sbjct: 558 ADKLAGLDPSDSGIYVLMSQIYASKSKWGQVKMLRTVMRDRRVKKNPGCSSIEVDGKCHE 617

Query: 585 FLSGD 589
           FL  D
Sbjct: 618 FLVAD 622



 Score =  128 bits (321), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 113/433 (26%), Positives = 185/433 (42%), Gaps = 84/433 (19%)

Query: 23  KRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICG 82
           KRGFI ++           V++ NA++  +  +  L +AR+LF+EM +R+VVSWT +I G
Sbjct: 158 KRGFIGQS-----------VLAGNALVHMYTSSMLLPDARKLFDEMADRDVVSWTTLIDG 206

Query: 83  LADAGRVCEARKLFEEMPERNVVSWNSM-------------VVGLIRN------------ 117
            A  G   EA ++F  M     V  N +             ++GL R             
Sbjct: 207 YARGGLPDEAWRVFCRMVVAESVWPNEVTLVAAASAAGQMGLLGLGRTVHQCIVESGGRM 266

Query: 118 ---------------GELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEME 162
                          G +  A++VF+ MPIK+V SW +M++ Y +C  +  A  LF+E+ 
Sbjct: 267 SVNLENALVDMFGKCGCVAAAKEVFDGMPIKDVYSWTSMVSAYAKCGDLENAAKLFKEIP 326

Query: 163 ERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIE 222
            RNVV+W+ M++ Y  A   +E   +F  M    V    A +                + 
Sbjct: 327 NRNVVSWSCMVAAYSHANMPDEAIRIFNDMIAAGVEPIDATL----------------VS 370

Query: 223 MKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQV 282
           +   C     C++     + + YI   ++E   NL +           + ID +   G V
Sbjct: 371 VLSAC--AQLCSLDVGTWLYDTYIVSHKVELTPNLSN-----------AFIDMFAKCGDV 417

Query: 283 SNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAA 342
             A  LF NM D++ V+W  MI     +    EA +LF E + +G+ P  AT+  +  A 
Sbjct: 418 GAASRLFSNMEDKNVVSWNTMIMAHGLHGQPEEALHLFQEFKGNGILPDEATYIGVLSAC 477

Query: 343 GATANIDLGRQIHCVLMKTESESDLILEN--CLISMYAKCGVIDNAYNIFSNM-VSRDLV 399
                +  GR  H   MK     +   E+  C+I +  K G++  A+ +  +M V  D  
Sbjct: 478 SHGGLVSEGR-CHFKEMKIVYGIEPRAEHYACMIDLLGKVGLLQEAFEVARSMPVGADEA 536

Query: 400 SWNSMVMGFSHHG 412
            W +++     HG
Sbjct: 537 GWGALLNACRMHG 549



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 72/272 (26%), Positives = 134/272 (49%), Gaps = 16/272 (5%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWT 77
           +  + K G +  AK +F  MP ++V S+ +M+S + + G L  A +LF+E+P RNVVSW+
Sbjct: 275 VDMFGKCGCVAAAKEVFDGMPIKDVYSWTSMVSAYAKCGDLENAAKLFKEIPNRNVVSWS 334

Query: 78  AMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRN----GELNEARKVFNSMPIK 133
            M+   + A    EA ++F +M    V   ++ +V ++        L+    ++++  + 
Sbjct: 335 CMVAAYSHANMPDEAIRIFNDMIAAGVEPIDATLVSVLSACAQLCSLDVGTWLYDTYIVS 394

Query: 134 NVISW-----NAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCL 188
           + +       NA I  + +C  +G A  LF  ME++NVV+W +MI  +   G+ EE   L
Sbjct: 395 HKVELTPNLSNAFIDMFAKCGDVGAASRLFSNMEDKNVVSWNTMIMAHGLHGQPEEALHL 454

Query: 189 FRRMPRKNVV----SWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMING 244
           F+      ++    ++  ++   +  G   E    F EMK +   G     +    MI+ 
Sbjct: 455 FQEFKGNGILPDEATYIGVLSACSHGGLVSEGRCHFKEMKIV--YGIEPRAEHYACMIDL 512

Query: 245 YIRFGRLEEAQNLFDTVPV-RDEISWTSMIDG 275
             + G L+EA  +  ++PV  DE  W ++++ 
Sbjct: 513 LGKVGLLQEAFEVARSMPVGADEAGWGALLNA 544



 Score = 79.0 bits (193), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 57/200 (28%), Positives = 95/200 (47%), Gaps = 15/200 (7%)

Query: 7   PKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFE 66
           P   V   TS ++ Y+K G ++ A  LF+ +P RNVVS++ M++ +       EA R+F 
Sbjct: 295 PIKDVYSWTSMVSAYAKCGDLENAAKLFKEIPNRNVVSWSCMVAAYSHANMPDEAIRIFN 354

Query: 67  EMPER----------NVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIR 116
           +M             +V+S  A +C L D G       +     E      N+ +    +
Sbjct: 355 DMIAAGVEPIDATLVSVLSACAQLCSL-DVGTWLYDTYIVSHKVELTPNLSNAFIDMFAK 413

Query: 117 NGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVV----TWTSM 172
            G++  A ++F++M  KNV+SWN MI  +       EA+ LF+E +   ++    T+  +
Sbjct: 414 CGDVGAASRLFSNMEDKNVVSWNTMIMAHGLHGQPEEALHLFQEFKGNGILPDEATYIGV 473

Query: 173 ISGYCRAGEVEEGYCLFRRM 192
           +S     G V EG C F+ M
Sbjct: 474 LSACSHGGLVSEGRCHFKEM 493


>gi|225457044|ref|XP_002279639.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21300
           [Vitis vinifera]
          Length = 807

 Score =  286 bits (731), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 183/644 (28%), Positives = 322/644 (50%), Gaps = 65/644 (10%)

Query: 14  LTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEM----- 68
           + S +T Y K G +++A  +F+ MP+ ++VS+N M+SGF ++   + +   F  M     
Sbjct: 147 VNSLLTMYWKCGVVEDAVQMFEKMPEVDLVSWNTMISGFQKSMDYTRSLMFFRSMVWEFG 206

Query: 69  --PERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLI----RNGELNE 122
             P R  V+  + I   +    +   R++   + +  +     +V  LI    + G +  
Sbjct: 207 IYPNR--VACVSSILSCSSLQSLTHGREIHGVVVKSGLDVEEYLVSSLIEMYMKCGSIKN 264

Query: 123 ARKVFNSMPIK-----NVISWNAMIAGYVECCMMGEAIVLFEEME--------------- 162
           A  +FNS+  K     N + WN MI+GYV      +A++LF +M                
Sbjct: 265 AENIFNSILDKDSVRRNAVIWNVMISGYVSNGCFSQALLLFIKMMVWGIKPDYSTMVSLF 324

Query: 163 ------------------------ERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVV 198
                                   + N+   T+++  Y + G++  G  +FRR    N++
Sbjct: 325 SLCSESLDIAFGKQIHGLIFKFGLKNNIRVETALLDMYLKCGDMGTGLKIFRRSQNHNLI 384

Query: 199 SWTAMIGGFAWNGFHKESLLLFIEMK---GICDNGNNCNV-QSCNSMINGYIRFGRLEEA 254
            W+A+I   A +G   ++L LF E K   G+ D+G    V ++C+S+    ++   ++  
Sbjct: 385 MWSAVISNCAQSGCPTKALELFYEFKMEDGLADSGILVAVLRACSSLT---LKPEGMQIH 441

Query: 255 QNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFV 314
                   V D    ++++D Y     +  +  +F  +  +D V+W A+ISG  Q+E   
Sbjct: 442 GLATKMGFVSDVFVGSALVDLYAKCRDMGYSKKVFLRLSQKDLVSWNALISGYAQDECAD 501

Query: 315 EATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLI 374
           EA   F +M+   + P   T + +       + + L +++H  L++    S +++ N LI
Sbjct: 502 EALKAFRDMQLEEIRPNTVTIACILSVCAHLSVMTLCKEVHGYLIRQGLGSTVLVSNSLI 561

Query: 375 SMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSV 434
           + YAKCG I+++   F  M  R+ VSWNS+++G   H   +E + +F+ M+ SG  P+ V
Sbjct: 562 ATYAKCGDINSSLYTFEKMPERNDVSWNSIILGMGMHSRTDEMIVLFDKMVASGIKPDHV 621

Query: 435 TFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLR 494
           TF  ILSACSHAG V  G + F +M + + ++P  E Y  M++LLGRAG + +A + ++ 
Sbjct: 622 TFTAILSACSHAGRVDEGCKYFKSMVEDFNLKPQLEQYTCMVDLLGRAGHLNQAYDLIMA 681

Query: 495 LPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVE 554
           +P  PD RIWG+LLG+C    G+  +AE  A  + +L P +    V+L N+Y   G+  E
Sbjct: 682 MPCTPDDRIWGSLLGSCK-NHGDEILAEIVANHIFKLVPSSVGYRVLLANLYENLGKGRE 740

Query: 555 EHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
             K+R ++   G++K PGCSW+  +    +F++GD+  +Q  EI
Sbjct: 741 GSKVRSEIKDMGLKKKPGCSWIEVDNNFHIFIAGDRSHSQSDEI 784



 Score = 95.1 bits (235), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 60/205 (29%), Positives = 105/205 (51%), Gaps = 7/205 (3%)

Query: 263 VRDEISWT-SMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFM 321
           V D++S   S++  Y   G V +A  +F  MP+ D V+W  MISG  ++  +  +   F 
Sbjct: 140 VLDDVSVVNSLLTMYWKCGVVEDAVQMFEKMPEVDLVSWNTMISGFQKSMDYTRSLMFFR 199

Query: 322 EMR-AHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKC 380
            M    G+ P          +  +  ++  GR+IH V++K+  + +  L + LI MY KC
Sbjct: 200 SMVWEFGIYPNRVACVSSILSCSSLQSLTHGREIHGVVVKSGLDVEEYLVSSLIEMYMKC 259

Query: 381 GVIDNAYNIFSNMVSRDLVS-----WNSMVMGFSHHGLANETLKVFESMLESGTHPNSVT 435
           G I NA NIF++++ +D V      WN M+ G+  +G  ++ L +F  M+  G  P+  T
Sbjct: 260 GSIKNAENIFNSILDKDSVRRNAVIWNVMISGYVSNGCFSQALLLFIKMMVWGIKPDYST 319

Query: 436 FLGILSACSHAGLVSRGWELFNAMF 460
            + + S CS +  ++ G ++   +F
Sbjct: 320 MVSLFSLCSESLDIAFGKQIHGLIF 344



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 61/191 (31%), Positives = 96/191 (50%), Gaps = 7/191 (3%)

Query: 303 MISGLVQNELFVEATYLFMEMRAHGVPPLN-ATFSVLFGAAGATANIDLGRQIHCVLMKT 361
           +I    ++  F +A  ++++M   GV       F  L  A G   ++  GRQIH  ++K 
Sbjct: 79  VIREYTEDGFFDDAIGVYLKMLDDGVKVEEFRYFPCLIKAFGGLCDVYKGRQIHGHVLKL 138

Query: 362 ESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVF 421
               D+ + N L++MY KCGV+++A  +F  M   DLVSWN+M+ GF        +L  F
Sbjct: 139 GVLDDVSVVNSLLTMYWKCGVVEDAVQMFEKMPEVDLVSWNTMISGFQKSMDYTRSLMFF 198

Query: 422 ESML-ESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYV--SMINL 478
            SM+ E G +PN V  +  + +CS    ++ G E+      V K     E Y+  S+I +
Sbjct: 199 RSMVWEFGIYPNRVACVSSILSCSSLQSLTHGREIHGV---VVKSGLDVEEYLVSSLIEM 255

Query: 479 LGRAGKIKEAE 489
             + G IK AE
Sbjct: 256 YMKCGSIKNAE 266



 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 44/132 (33%), Positives = 69/132 (52%), Gaps = 9/132 (6%)

Query: 9   SLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEM 68
           S V+   S I  Y+K G I+ +   F+ MP+RN VS+N+++ G   + R  E   LF++M
Sbjct: 552 STVLVSNSLIATYAKCGDINSSLYTFEKMPERNDVSWNSIILGMGMHSRTDEMIVLFDKM 611

Query: 69  PERNV----VSWTAMICGLADAGRVCEARKLFEEMPER-----NVVSWNSMVVGLIRNGE 119
               +    V++TA++   + AGRV E  K F+ M E       +  +  MV  L R G 
Sbjct: 612 VASGIKPDHVTFTAILSACSHAGRVDEGCKYFKSMVEDFNLKPQLEQYTCMVDLLGRAGH 671

Query: 120 LNEARKVFNSMP 131
           LN+A  +  +MP
Sbjct: 672 LNQAYDLIMAMP 683


>gi|345505230|gb|AEN99839.1| chlororespiratory reduction 4 [Nasturtium officinale]
          Length = 614

 Score =  286 bits (731), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 161/454 (35%), Positives = 250/454 (55%), Gaps = 16/454 (3%)

Query: 139 NAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPR--KN 196
           N +I  Y++C  +G A  +F+ M +R+ V++ SMI GY + G +E    LF  MPR  KN
Sbjct: 161 NCLIGLYLKCGCLGFARQIFDRMPQRDSVSYNSMIDGYIKCGLIESARELFDLMPREMKN 220

Query: 197 VVSWTAMIGGFAW--NGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEA 254
           ++SW +MI G+A   +G +  S L F EM          ++ S NS+I GY++ GR+E+A
Sbjct: 221 LISWNSMISGYAQTSDGVNIASKL-FAEMP-------EKDLISWNSLIYGYVKHGRMEDA 272

Query: 255 QNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFV 314
           ++LF  +P RD ++W +MIDGY  +G V  A  LF  MP RD VA+ +M++G VQN   +
Sbjct: 273 KDLFHVMPRRDVVTWATMIDGYAKLGFVHKAKTLFDQMPHRDVVAYNSMMAGYVQNRHHM 332

Query: 315 EATYLF--MEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENC 372
           EA  +F  ME  +H + P   T  ++  A      +     +H  +++ +      L   
Sbjct: 333 EALEIFSDMEKESH-LTPDETTLVIVLSAIAQLGQLSKAMDMHLYIVEKQFYLGGKLGVA 391

Query: 373 LISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPN 432
           LI MY+KCG I  A  +F  + ++ +  WN+M+ G + HGL      +   +      P+
Sbjct: 392 LIDMYSKCGSIQQAMCVFEGIENKSIDHWNAMIGGLAIHGLGESAFNILLEIERRSIEPD 451

Query: 433 SVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFV 492
            +TF+G+L+ACSH+GLV  G   F  M   +KI+P  +HY  M++LL R G I+ A+  +
Sbjct: 452 YITFVGVLNACSHSGLVKEGLLCFELMRRKHKIEPRLQHYGCMVDLLSRCGSIELAKNLI 511

Query: 493 LRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRH 552
             +P EP+  IW   L AC       EI E  AK L+     N  ++V+L N+YA+ GR 
Sbjct: 512 EEMPIEPNDVIWRTFLTACNH-HKEFEIGELVAKHLILQAGYNPSSYVLLSNMYASFGRW 570

Query: 553 VEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFL 586
            +   +R  M  + ++KVPGCSW+  +G +  F 
Sbjct: 571 KDVRNVRTMMKERKLQKVPGCSWIELDGRVHEFF 604



 Score =  182 bits (463), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 120/410 (29%), Positives = 218/410 (53%), Gaps = 18/410 (4%)

Query: 46  NAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPE--RN 103
           N ++  +L+ G L  AR++F+ MP+R+ VS+ +MI G    G +  AR+LF+ MP   +N
Sbjct: 161 NCLIGLYLKCGCLGFARQIFDRMPQRDSVSYNSMIDGYIKCGLIESARELFDLMPREMKN 220

Query: 104 VVSWNSMVVGLIRNGE-LNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEME 162
           ++SWNSM+ G  +  + +N A K+F  MP K++ISWN++I GYV+   M +A  LF  M 
Sbjct: 221 LISWNSMISGYAQTSDGVNIASKLFAEMPEKDLISWNSLIYGYVKHGRMEDAKDLFHVMP 280

Query: 163 ERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIE 222
            R+VVTW +MI GY + G V +   LF +MP ++VV++ +M+ G+  N  H E+L +F +
Sbjct: 281 RRDVVTWATMIDGYAKLGFVHKAKTLFDQMPHRDVVAYNSMMAGYVQNRHHMEALEIFSD 340

Query: 223 MKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISW-----TSMIDGYL 277
           M+   ++    +  +   +++   + G+L +A ++   + V  +         ++ID Y 
Sbjct: 341 MEK--ESHLTPDETTLVIVLSAIAQLGQLSKAMDMHLYI-VEKQFYLGGKLGVALIDMYS 397

Query: 278 SVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSV 337
             G +  A  +F  + ++    W AMI GL  + L   A  + +E+    + P   TF  
Sbjct: 398 KCGSIQQAMCVFEGIENKSIDHWNAMIGGLAIHGLGESAFNILLEIERRSIEPDYITFVG 457

Query: 338 LFGAAGATANIDLGRQIHCV-LMKTESESDLILEN--CLISMYAKCGVIDNAYNIFSNM- 393
           +  A   +  +  G  + C  LM+ + + +  L++  C++ + ++CG I+ A N+   M 
Sbjct: 458 VLNACSHSGLVKEG--LLCFELMRRKHKIEPRLQHYGCMVDLLSRCGSIELAKNLIEEMP 515

Query: 394 VSRDLVSWNSMVMGFSHHG-LANETLKVFESMLESGTHPNSVTFLGILSA 442
           +  + V W + +   +HH       L     +L++G +P+S   L  + A
Sbjct: 516 IEPNDVIWRTFLTACNHHKEFEIGELVAKHLILQAGYNPSSYVLLSNMYA 565



 Score =  125 bits (313), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 72/290 (24%), Positives = 151/290 (52%), Gaps = 43/290 (14%)

Query: 27  IDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADA 86
           ++ A  LF  MP+++++S+N+++ G++++GR+ +A+ LF  MP R+VV+W  MI G A  
Sbjct: 238 VNIASKLFAEMPEKDLISWNSLIYGYVKHGRMEDAKDLFHVMPRRDVVTWATMIDGYAKL 297

Query: 87  GRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNA-----M 141
           G V +A+ LF++MP R+VV++NSM+ G ++N    EA ++F+ M  ++ ++ +      +
Sbjct: 298 GFVHKAKTLFDQMPHRDVVAYNSMMAGYVQNRHHMEALEIFSDMEKESHLTPDETTLVIV 357

Query: 142 IAGYVECCMMGEAIVLFEEMEERNVV----TWTSMISGYCRAGEVEEGYCLFRRMPRKNV 197
           ++   +   + +A+ +   + E+          ++I  Y + G +++  C+F  +  K++
Sbjct: 358 LSAIAQLGQLSKAMDMHLYIVEKQFYLGGKLGVALIDMYSKCGSIQQAMCVFEGIENKSI 417

Query: 198 VSWTAMIGGFAWNGFHKESLLLFIEMK---------------------GICDNGNNC--- 233
             W AMIGG A +G  + +  + +E++                     G+   G  C   
Sbjct: 418 DHWNAMIGGLAIHGLGESAFNILLEIERRSIEPDYITFVGVLNACSHSGLVKEGLLCFEL 477

Query: 234 ---------NVQSCNSMINGYIRFGRLEEAQNLFDTVPVR-DEISWTSMI 273
                     +Q    M++   R G +E A+NL + +P+  +++ W + +
Sbjct: 478 MRRKHKIEPRLQHYGCMVDLLSRCGSIELAKNLIEEMPIEPNDVIWRTFL 527



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 58/208 (27%), Positives = 88/208 (42%), Gaps = 14/208 (6%)

Query: 221 IEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLS-- 278
           I++ G C N N+        +  G+I+   L            +  +++      YL+  
Sbjct: 17  IQLVGSCKNSNDVGKIHARLITTGFIKNSNL----------TTKIVVAFADSRRPYLAEF 66

Query: 279 VGQVSNAYYLFHNMPD--RDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFS 336
              V   Y++    P   +D   W  +I           A   F  M  +G+     +FS
Sbjct: 67  ARYVFREYHVCSFAPGDVKDPFLWNLVIKSHSHGVDPRRALLWFCLMLENGISVDKFSFS 126

Query: 337 VLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSR 396
           ++  A      +  G QIH  L KT   SDL L+NCLI +Y KCG +  A  IF  M  R
Sbjct: 127 LVLKACSRLGFLKGGMQIHGFLRKTGIWSDLFLQNCLIGLYLKCGCLGFARQIFDRMPQR 186

Query: 397 DLVSWNSMVMGFSHHGLANETLKVFESM 424
           D VS+NSM+ G+   GL     ++F+ M
Sbjct: 187 DSVSYNSMIDGYIKCGLIESARELFDLM 214


>gi|356495733|ref|XP_003516728.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20770-like [Glycine max]
          Length = 770

 Score =  286 bits (731), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 172/584 (29%), Positives = 308/584 (52%), Gaps = 38/584 (6%)

Query: 21  YSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNV----VSW 76
           Y+K G   +A  +F+ +P+ N V++  M+ G  Q  ++ EA  LF  M  + +    VS 
Sbjct: 183 YAKCGLNADALRVFRDIPEPNEVTFTTMMGGLAQTNQIKEAAELFRLMLRKGIRVDSVSL 242

Query: 77  TAM--IC-----------GLADAGRVCEARKLFEEMP-ERNVVSWNSMVVGLIRNGELNE 122
           ++M  +C           G++   +  +   L  ++  ER++   NS++    + G+++ 
Sbjct: 243 SSMLGVCAKGERDVGPCHGISTNAQGKQMHTLSVKLGFERDLHLCNSLLDMYAKIGDMDS 302

Query: 123 ARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEME----ERNVVTWTSMISGYCR 178
           A KVF ++   +V+SWN MIAGY   C   +A    + M+    E + VT+ +M++   +
Sbjct: 303 AEKVFVNLNRHSVVSWNIMIAGYGNRCNSEKAAEYLQRMQSDGYEPDDVTYINMLTACVK 362

Query: 179 AGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNV--- 235
           +G+V  G  +F  MP  ++ SW A++ G+  N  H+E++ LF +M+  C + +   +   
Sbjct: 363 SGDVRTGRQIFDCMPCPSLTSWNAILSGYNQNADHREAVELFRKMQFQCQHPDRTTLAVI 422

Query: 236 -QSCNSMINGYIRFGRLEEAQN----LFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFH 290
             SC  +  G++  G+   A +     +D V V      +S+I+ Y   G++  + ++F 
Sbjct: 423 LSSCAEL--GFLEAGKEVHAASQKFGFYDDVYVA-----SSLINVYSKCGKMELSKHVFS 475

Query: 291 NMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDL 350
            +P+ D V W +M++G   N L  +A   F +MR  G  P   +F+ +  +    +++  
Sbjct: 476 KLPELDVVCWNSMLAGFSINSLGQDALSFFKKMRQLGFFPSEFSFATVVSSCAKLSSLFQ 535

Query: 351 GRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSH 410
           G+Q H  ++K     D+ + + LI MY KCG ++ A   F  M  R+ V+WN M+ G++ 
Sbjct: 536 GQQFHAQIVKDGFLDDIFVGSSLIEMYCKCGDVNGARCFFDVMPGRNTVTWNEMIHGYAQ 595

Query: 411 HGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPE 470
           +G  +  L ++  M+ SG  P+ +T++ +L+ACSH+ LV  G E+FNAM   Y + P   
Sbjct: 596 NGDGHNALCLYNDMISSGEKPDDITYVAVLTACSHSALVDEGLEIFNAMLQKYGVVPKVA 655

Query: 471 HYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLE 530
           HY  +I+ L RAG+  E E  +  +P + D  +W  +L +C     N  +A+ AA+ L  
Sbjct: 656 HYTCIIDCLSRAGRFNEVEVILDAMPCKDDAVVWEVVLSSCRI-HANLSLAKRAAEELYR 714

Query: 531 LDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCS 574
           LDP N+ ++V+L N+Y++ G+  + H +R  M    VRK PG S
Sbjct: 715 LDPQNSASYVLLANMYSSLGKWDDAHVVRDLMSHNQVRKDPGYS 758



 Score =  176 bits (447), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 136/543 (25%), Positives = 248/543 (45%), Gaps = 75/543 (13%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWT 77
           I  YSK   I  A  +F  +P +N+ S+NA+L+ + +   L  A RLF +MP+RN VS  
Sbjct: 48  IELYSKCDHIASACHVFDNIPHKNIFSWNAILAAYCKARNLQYACRLFLQMPQRNTVSLN 107

Query: 78  AMICGLADAGRVCEARKLFEEMPERNVV-SWNSMVVGLIRNGELNEAR--KVFNSMPIK- 133
            +I  +   G   +A   ++ +    V+ S  +        G L +A   +  + + IK 
Sbjct: 108 TLISTMVRCGYERQALDTYDSVMLDGVIPSHITFATVFSACGSLLDADCGRRTHGVVIKV 167

Query: 134 ----NVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLF 189
               N+   NA++  Y +C +  +A+ +F ++ E N VT+T+M+ G  +  +++E   LF
Sbjct: 168 GLESNIYVVNALLCMYAKCGLNADALRVFRDIPEPNEVTFTTMMGGLAQTNQIKEAAELF 227

Query: 190 RRMPRKNV----VSWTAMIG-------------GFAWNGFHKESLLLFIEMKGICDNGNN 232
           R M RK +    VS ++M+G             G + N   K+   L +++      G  
Sbjct: 228 RLMLRKGIRVDSVSLSSMLGVCAKGERDVGPCHGISTNAQGKQMHTLSVKL------GFE 281

Query: 233 CNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGY---------------- 276
            ++  CNS+++ Y + G ++ A+ +F  +     +SW  MI GY                
Sbjct: 282 RDLHLCNSLLDMYAKIGDMDSAEKVFVNLNRHSVVSWNIMIAGYGNRCNSEKAAEYLQRM 341

Query: 277 -------------------LSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEAT 317
                              +  G V     +F  MP     +W A++SG  QN    EA 
Sbjct: 342 QSDGYEPDDVTYINMLTACVKSGDVRTGRQIFDCMPCPSLTSWNAILSGYNQNADHREAV 401

Query: 318 YLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMY 377
            LF +M+     P   T +V+  +      ++ G+++H    K     D+ + + LI++Y
Sbjct: 402 ELFRKMQFQCQHPDRTTLAVILSSCAELGFLEAGKEVHAASQKFGFYDDVYVASSLINVY 461

Query: 378 AKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFL 437
           +KCG ++ + ++FS +   D+V WNSM+ GFS + L  + L  F+ M + G  P+  +F 
Sbjct: 462 SKCGKMELSKHVFSKLPELDVVCWNSMLAGFSINSLGQDALSFFKKMRQLGFFPSEFSFA 521

Query: 438 GILSACSHAGLVSRGWELFNAMFDVYKIQPG--PEHYV--SMINLLGRAGKIKEAEEFVL 493
            ++S+C+    + +G +     F    ++ G   + +V  S+I +  + G +  A  F  
Sbjct: 522 TVVSSCAKLSSLFQGQQ-----FHAQIVKDGFLDDIFVGSSLIEMYCKCGDVNGARCFFD 576

Query: 494 RLP 496
            +P
Sbjct: 577 VMP 579



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 80/316 (25%), Positives = 144/316 (45%), Gaps = 43/316 (13%)

Query: 239 NSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAV 298
           N  I  Y +   +  A ++FD +P ++  SW +++  Y     +  A  LF  MP R+ V
Sbjct: 45  NHFIELYSKCDHIASACHVFDNIPHKNIFSWNAILAAYCKARNLQYACRLFLQMPQRNTV 104

Query: 299 AWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVL 358
           +   +IS +V+     +A   +  +   GV P + TF+ +F A G+  + D GR+ H V+
Sbjct: 105 SLNTLISTMVRCGYERQALDTYDSVMLDGVIPSHITFATVFSACGSLLDADCGRRTHGVV 164

Query: 359 MKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETL 418
           +K   ES++ + N L+ MYAKCG+  +A  +F ++   + V++ +M+ G +      E  
Sbjct: 165 IKVGLESNIYVVNALLCMYAKCGLNADALRVFRDIPEPNEVTFTTMMGGLAQTNQIKEAA 224

Query: 419 KVFESMLESGTHPNSVTFLGILSACS---------------------HAGLVSRGWE--- 454
           ++F  ML  G   +SV+   +L  C+                     H   V  G+E   
Sbjct: 225 ELFRLMLRKGIRVDSVSLSSMLGVCAKGERDVGPCHGISTNAQGKQMHTLSVKLGFERDL 284

Query: 455 -LFNAMFDVY----KIQPGPEHYVS-----------MINLLGRAGKIKEAEEFVLRLP-- 496
            L N++ D+Y     +    + +V+           MI   G     ++A E++ R+   
Sbjct: 285 HLCNSLLDMYAKIGDMDSAEKVFVNLNRHSVVSWNIMIAGYGNRCNSEKAAEYLQRMQSD 344

Query: 497 -FEPDHRIWGALLGAC 511
            +EPD   +  +L AC
Sbjct: 345 GYEPDDVTYINMLTAC 360



 Score = 56.2 bits (134), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 48/226 (21%), Positives = 87/226 (38%), Gaps = 64/226 (28%)

Query: 351 GRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSH 410
           G+ +H  L +    SD  L N  I +Y+KC  I +A ++F N+  +++ SWN+++  +  
Sbjct: 25  GKVVHARLFRLALFSDTFLSNHFIELYSKCDHIASACHVFDNIPHKNIFSWNAILAAYCK 84

Query: 411 H-------------------------------GLANETLKVFESMLESGTHPNSVTFLGI 439
                                           G   + L  ++S++  G  P+ +TF  +
Sbjct: 85  ARNLQYACRLFLQMPQRNTVSLNTLISTMVRCGYERQALDTYDSVMLDGVIPSHITFATV 144

Query: 440 LSAC-----------SHAGLVSRGWE----LFNAMFDVYKI---------------QPGP 469
            SAC           +H  ++  G E    + NA+  +Y                 +P  
Sbjct: 145 FSACGSLLDADCGRRTHGVVIKVGLESNIYVVNALLCMYAKCGLNADALRVFRDIPEPNE 204

Query: 470 EHYVSMINLLGRAGKIKEAEE---FVLRLPFEPDHRIWGALLGACG 512
             + +M+  L +  +IKEA E    +LR     D     ++LG C 
Sbjct: 205 VTFTTMMGGLAQTNQIKEAAELFRLMLRKGIRVDSVSLSSMLGVCA 250


>gi|297843734|ref|XP_002889748.1| hypothetical protein ARALYDRAFT_471032 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297335590|gb|EFH66007.1| hypothetical protein ARALYDRAFT_471032 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 595

 Score =  286 bits (731), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 177/546 (32%), Positives = 286/546 (52%), Gaps = 61/546 (11%)

Query: 46  NAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVV 105
           NA ++   + G++ EAR+LF+    ++V SW +M+   + +    +A+ LF+EMPERN++
Sbjct: 19  NAQITHLSRIGQIHEARKLFDSCDSKSVSSWNSMVAVYSASCMPRDAQLLFDEMPERNII 78

Query: 106 SWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCM--MGEAIVLFEEMEE 163
           SWN ++ G ++NGE++EAR+VF+ M  +NV+SW  ++    E     M E   + E M  
Sbjct: 79  SWNGLLSGYMKNGEIDEAREVFDLMLERNVVSWTTLV-DVAESLFWKMPEKNKMGESMMR 137

Query: 164 RNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEM 223
            + +  TSMI G C+ G V+E   +F  M  ++V++WT M+ G+  N    ++  LF  M
Sbjct: 138 VSYIARTSMIHGLCKEGRVDEAREIFDEMSERSVITWTTMVTGYGRNNRVDDARKLFDVM 197

Query: 224 KGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVS 283
               +        S  SM+  Y++ GR+E+A+ LF+    RD                 S
Sbjct: 198 PEKTE-------VSWTSMLMSYVQNGRIEDAEELFE-AKRRD-----------------S 232

Query: 284 NAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAG 343
            +   F +M +R+   W  +I    +N   +EA  LF+ M+  GV P   T   +     
Sbjct: 233 KSKEGFDSMKERNDATWQMVIKFHERNGFELEALDLFVLMQKQGVRPTFPTLISVLSVCA 292

Query: 344 ATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNS 403
           + A++  G+Q+H  L++ + + DL + + L++MY KCG +  +  IF    S+D++ WNS
Sbjct: 293 SLASLHHGKQVHAQLVRCQFDVDLYVASVLMTMYIKCGELLKSKLIFDRFPSKDIIMWNS 352

Query: 404 MVMGFSHHGLANETLKVFESMLESG-THPNSVTFLGILSACSHAGLVSRGWELFNAMFDV 462
           ++ G++ H L  E LK+F  M  SG T PN VTF+  LSACS+AG+V  G ++F      
Sbjct: 353 IISGYASHSLGEEALKIFYEMPLSGSTEPNEVTFVATLSACSYAGMVEEGLKIFE----- 407

Query: 463 YKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAE 522
                      SM ++LGRAG+  EA E +  +  EPD  +WG+LLGAC       ++AE
Sbjct: 408 -----------SMESVLGRAGRFNEAMEMIDSMIVEPDAAVWGSLLGACR-THSQLDLAE 455

Query: 523 HAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGI 582
             AK+L+E++  N+ +   +               L++  GL  VRK PGCSW      +
Sbjct: 456 FCAKKLIEIETENSGSPTFM--------------HLKVG-GLMLVRKSPGCSWNEVKFKV 500

Query: 583 QMFLSG 588
             F  G
Sbjct: 501 HAFTHG 506



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 124/449 (27%), Positives = 201/449 (44%), Gaps = 99/449 (22%)

Query: 16  SSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVS 75
           + IT  S+ G I EA+ LF     ++V S+N+M++ +  +    +A+ LF+EMPERN++S
Sbjct: 20  AQITHLSRIGQIHEARKLFDSCDSKSVSSWNSMVAVYSASCMPRDAQLLFDEMPERNIIS 79

Query: 76  WTAMICGLADAGRVCEARKLFEEMPERNVVSW---------------------------- 107
           W  ++ G    G + EAR++F+ M ERNVVSW                            
Sbjct: 80  WNGLLSGYMKNGEIDEAREVFDLMLERNVVSWTTLVDVAESLFWKMPEKNKMGESMMRVS 139

Query: 108 ----NSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEE 163
                SM+ GL + G ++EAR++F+ M  ++VI+W  M+ GY     + +A  LF+ M E
Sbjct: 140 YIARTSMIHGLCKEGRVDEAREIFDEMSERSVITWTTMVTGYGRNNRVDDARKLFDVMPE 199

Query: 164 RNVVTWTSMISGYCRAGEVEEGYCLF---RR----------MPRKNVVSWTAMIGGFAWN 210
           +  V+WTSM+  Y + G +E+   LF   RR          M  +N  +W  +I     N
Sbjct: 200 KTEVSWTSMLMSYVQNGRIEDAEELFEAKRRDSKSKEGFDSMKERNDATWQMVIKFHERN 259

Query: 211 GFHKESLLLFIEMK---------------GIC------DNGNNCNVQ-----------SC 238
           GF  E+L LF+ M+                +C       +G   + Q             
Sbjct: 260 GFELEALDLFVLMQKQGVRPTFPTLISVLSVCASLASLHHGKQVHAQLVRCQFDVDLYVA 319

Query: 239 NSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMP----- 293
           + ++  YI+ G L +++ +FD  P +D I W S+I GY S      A  +F+ MP     
Sbjct: 320 SVLMTMYIKCGELLKSKLIFDRFPSKDIIMWNSIISGYASHSLGEEALKIFYEMPLSGST 379

Query: 294 DRDAVAWTAMISGLVQNELFVEATYLF----------------MEM-RAHGVPPLNATFS 336
           + + V + A +S      +  E   +F                MEM  +  V P  A + 
Sbjct: 380 EPNEVTFVATLSACSYAGMVEEGLKIFESMESVLGRAGRFNEAMEMIDSMIVEPDAAVWG 439

Query: 337 VLFGAAGATANIDLGRQIHCVLMKTESES 365
            L GA    + +DL       L++ E+E+
Sbjct: 440 SLLGACRTHSQLDLAEFCAKKLIEIETEN 468



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 80/313 (25%), Positives = 147/313 (46%), Gaps = 40/313 (12%)

Query: 15  TSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVV 74
           TS I    K G +DEA+ +F  M +R+V+++  M++G+ +N R+ +AR+LF+ MPE+  V
Sbjct: 144 TSMIHGLCKEGRVDEAREIFDEMSERSVITWTTMVTGYGRNNRVDDARKLFDVMPEKTEV 203

Query: 75  SWTAMICGLADAGRVCEARKLFE-------------EMPERNVVSWNSMVVGLIRNGELN 121
           SWT+M+      GR+ +A +LFE              M ERN  +W  ++    RNG   
Sbjct: 204 SWTSMLMSYVQNGRIEDAEELFEAKRRDSKSKEGFDSMKERNDATWQMVIKFHERNGFEL 263

Query: 122 EARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEER--------NVVTWTSMI 173
           EA  +F  M  + V      +   +  C    ++   +++  +        ++   + ++
Sbjct: 264 EALDLFVLMQKQGVRPTFPTLISVLSVCASLASLHHGKQVHAQLVRCQFDVDLYVASVLM 323

Query: 174 SGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNN- 232
           + Y + GE+ +   +F R P K+++ W ++I G+A +   +E+L +F EM        N 
Sbjct: 324 TMYIKCGELLKSKLIFDRFPSKDIIMWNSIISGYASHSLGEEALKIFYEMPLSGSTEPNE 383

Query: 233 ----CNVQSCN-------------SMINGYIRFGRLEEAQNLFDTVPVR-DEISWTSMID 274
                 + +C+             SM +   R GR  EA  + D++ V  D   W S++ 
Sbjct: 384 VTFVATLSACSYAGMVEEGLKIFESMESVLGRAGRFNEAMEMIDSMIVEPDAAVWGSLLG 443

Query: 275 GYLSVGQVSNAYY 287
              +  Q+  A +
Sbjct: 444 ACRTHSQLDLAEF 456



 Score = 98.6 bits (244), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 93/397 (23%), Positives = 176/397 (44%), Gaps = 66/397 (16%)

Query: 168 TWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGIC 227
           T  + I+   R G++ E   LF     K+V SW +M+  ++ +   +++ LLF EM    
Sbjct: 17  TANAQITHLSRIGQIHEARKLFDSCDSKSVSSWNSMVAVYSASCMPRDAQLLFDEMP--- 73

Query: 228 DNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYY 287
                 N+ S N +++GY++ G ++EA+ +FD +  R+ +SWT+++D          A  
Sbjct: 74  ----ERNIISWNGLLSGYMKNGEIDEAREVFDLMLERNVVSWTTLVD---------VAES 120

Query: 288 LFHNMPDRDA----------VAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSV 337
           LF  MP+++           +A T+MI GL +     EA  +F EM    V     T++ 
Sbjct: 121 LFWKMPEKNKMGESMMRVSYIARTSMIHGLCKEGRVDEAREIFDEMSERSV----ITWTT 176

Query: 338 LFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNI-------- 389
           +    G    +D  R++  V+     E   +    ++  Y + G I++A  +        
Sbjct: 177 MVTGYGRNNRVDDARKLFDVM----PEKTEVSWTSMLMSYVQNGRIEDAEELFEAKRRDS 232

Query: 390 -----FSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACS 444
                F +M  R+  +W  ++     +G   E L +F  M + G  P   T + +LS C+
Sbjct: 233 KSKEGFDSMKERNDATWQMVIKFHERNGFELEALDLFVLMQKQGVRPTFPTLISVLSVCA 292

Query: 445 HAGLVSRG----WELFNAMFDVYKIQPGPEHYVS--MINLLGRAGKIKEAEEFVLRLPFE 498
               +  G     +L    FDV       + YV+  ++ +  + G++ +++    R P  
Sbjct: 293 SLASLHHGKQVHAQLVRCQFDV-------DLYVASVLMTMYIKCGELLKSKLIFDRFP-S 344

Query: 499 PDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLN 535
            D  +W +++   G+   +  + E A K   E+ PL+
Sbjct: 345 KDIIMWNSIIS--GY--ASHSLGEEALKIFYEM-PLS 376


>gi|302773832|ref|XP_002970333.1| hypothetical protein SELMODRAFT_93575 [Selaginella moellendorffii]
 gi|300161849|gb|EFJ28463.1| hypothetical protein SELMODRAFT_93575 [Selaginella moellendorffii]
          Length = 612

 Score =  286 bits (731), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 168/543 (30%), Positives = 287/543 (52%), Gaps = 32/543 (5%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWT 77
           +T Y++ G    AK++F   PQR++VS+N M   F  + ++ E  +   +MP+ NVVSW 
Sbjct: 80  VTAYAQNGHFQNAKSMFDSSPQRDMVSWNTMCQSFSWSHKVDEVSQCLLKMPQHNVVSWN 139

Query: 78  AMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVIS 137
           +++C  A  G   +A+ LF  MPE++V+SWN +V+      +L+ A+ +F+  P  +V++
Sbjct: 140 SLLCTFAQNGHYLKAQALFVAMPEKDVISWN-IVISQYAEIDLDRAKLLFDRAPQHSVVT 198

Query: 138 WNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNV 197
           WN +IA + E     E+  +F+ M  R++V+W ++I+G  R G ++    LF R P +++
Sbjct: 199 WNVLIAHHCE-----ESKRVFDTMPCRDIVSW-NIIAGNAREGHLDCAMDLFDRSPSRSL 252

Query: 198 VSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNL 257
             W  ++ GFA +G    +       + I  +    +V S NS++ G + F  L +A  L
Sbjct: 253 ALWNVILSGFASSGDVNRA-------RSILSSMPRTDVISWNSLLAGLLEFSSLRDAGEL 305

Query: 258 FDTVPVRD--EISWTSMIDGYLSVGQVSNAYYLFHNMPDRDA----VAWTAMISGLVQNE 311
           F  +P R+   +  T+++D Y   G+V  A  +F +M  RD     V W AMI+G  ++ 
Sbjct: 306 FTAMPHRNLSSVVATALLDMYSRCGRVDQAKRVFDSMRARDERVDLVTWNAMIAGFARSG 365

Query: 312 LFVEATYLFMEMRA--HGVPPLNATFSVLFGAAGATA--NIDLGRQIHCVLMKTESESDL 367
             +EA  L+ E+      + P  +TF+ +  A  +     +  GR IH   +    + D 
Sbjct: 366 HSIEALELYRELEKLDRELQPDASTFAAVIDACASAVPPAVSEGRAIHRQAIARRMDHDP 425

Query: 368 ILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLES 427
           ++ + L++MY + G +D A   F  + +R+ V+WNSM++GF++HG     ++ F +M   
Sbjct: 426 VVGSSLVAMYTRIGGLDAAQRCFDRITARNTVAWNSMLVGFANHGSGTGVIQSFHAMQLD 485

Query: 428 GTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKE 487
           G   ++VTF+ +LS+CSHAG +    + F +M   + I   PEHY ++ +L  R G+I E
Sbjct: 486 GAIADAVTFVAVLSSCSHAGWIVEAGQCFQSMAADFFIAATPEHYSAIGDLFARLGQIGE 545

Query: 488 AEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYA 547
           A   +   P+E     W +LL AC     + E    AA +  E   L+ P       I A
Sbjct: 546 ARSLIRAKPYESSAADWMSLLSACRI-HCDVEHGASAAAQAFEFGELDDP-------IAA 597

Query: 548 ASG 550
           ASG
Sbjct: 598 ASG 600



 Score = 48.5 bits (114), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 53/224 (23%), Positives = 94/224 (41%), Gaps = 31/224 (13%)

Query: 343 GATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWN 402
            A  ++   + ++ +L +     D +  N L+ M+ KCG +++A  +F  + + D V WN
Sbjct: 18  AAQRDLSQAKHLYSLLQQNRYCLDKLTTNQLMRMFGKCGSVEDARKLFDQIDNPDTVQWN 77

Query: 403 SMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDV 462
            MV  ++ +G      +  +SM +S    + V++  +  + S +  V    +    M   
Sbjct: 78  IMVTAYAQNG----HFQNAKSMFDSSPQRDMVSWNTMCQSFSWSHKVDEVSQCLLKM--- 130

Query: 463 YKIQPGPEHYV----SMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNA 518
                 P+H V    S++    + G   +A+   + +P E D   W  ++         A
Sbjct: 131 ------PQHNVVSWNSLLCTFAQNGHYLKAQALFVAMP-EKDVISWNIVISQ------YA 177

Query: 519 EIAEHAAKRLLELDPLNAPAH-VVLCNIYAASGRHVEEHKLRMD 561
           EI    AK L +     AP H VV  N+  A   H EE K   D
Sbjct: 178 EIDLDRAKLLFD----RAPQHSVVTWNVLIA--HHCEESKRVFD 215


>gi|345505222|gb|AEN99835.1| chlororespiratory reduction 4, partial [Lepidium sativum]
          Length = 597

 Score =  285 bits (730), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 154/453 (33%), Positives = 255/453 (56%), Gaps = 14/453 (3%)

Query: 139 NAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPR--KN 196
           N +I  Y++C  +G +  +F+ M +R+ V++ SMI GY + G +E    LF  MP+  KN
Sbjct: 144 NCLIGLYLKCGCLGYSRQVFDRMPQRDSVSYNSMIDGYVKCGLIESARELFDLMPKEMKN 203

Query: 197 VVSWTAMIGGFAW--NGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEA 254
           ++SW  +I G+A   +G +  S L F EM          ++ S NSMI+GY++ GR+E+A
Sbjct: 204 LISWNCLISGYAQTSDGVNIASKL-FSEMP-------EKDLISWNSMIDGYVKHGRIEDA 255

Query: 255 QNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFV 314
           ++LFD +P RD I+W +MIDGY  +G +  A  LF  +P RD VA+ +M++G VQN+  +
Sbjct: 256 KDLFDVMPRRDVITWATMIDGYAKLGFIHQAKTLFDQIPHRDVVAYNSMMAGYVQNKYHM 315

Query: 315 EATYLFMEMRAHG-VPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCL 373
           EA  LF++M     + P   T  ++  A      +     +H  ++K +      L   L
Sbjct: 316 EALELFIKMEKESHLSPDETTLVIVLSAIAQLGRLSKAMDMHFYIVKKQFFIGGKLGVAL 375

Query: 374 ISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNS 433
           I MY+KCG I +A  +F  + ++++  WN+++ G + HGL      +   +      P+ 
Sbjct: 376 IDMYSKCGSIQHAMLVFKGLENKNIDHWNAIIGGLAIHGLGGPAFDMLLQIERLSIKPDD 435

Query: 434 VTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVL 493
           +TF+G+L+ACSH+GLV  G   F  M   +KI+P  +HY  M+++L R+G I+ A+  + 
Sbjct: 436 ITFIGVLNACSHSGLVKEGLLCFELMRRKHKIEPRLQHYGCMVDILSRSGSIELAKILIE 495

Query: 494 RLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHV 553
           ++P EP+  IW   L AC       E+ E  AK L+     N  ++V+L N+YA+ G   
Sbjct: 496 KMPIEPNDVIWRTFLTACSH-HKEFEMGELVAKHLILQAGYNPSSYVLLSNMYASCGMWK 554

Query: 554 EEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFL 586
           +  ++R  M  + ++K+PGCSW+  +G +  F 
Sbjct: 555 DVRRVRTMMKERKIQKIPGCSWIELDGRVHEFF 587



 Score =  182 bits (461), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 128/450 (28%), Positives = 239/450 (53%), Gaps = 23/450 (5%)

Query: 46  NAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPE--RN 103
           N ++  +L+ G L  +R++F+ MP+R+ VS+ +MI G    G +  AR+LF+ MP+  +N
Sbjct: 144 NCLIGLYLKCGCLGYSRQVFDRMPQRDSVSYNSMIDGYVKCGLIESARELFDLMPKEMKN 203

Query: 104 VVSWNSMVVGLIRNGE-LNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEME 162
           ++SWN ++ G  +  + +N A K+F+ MP K++ISWN+MI GYV+   + +A  LF+ M 
Sbjct: 204 LISWNCLISGYAQTSDGVNIASKLFSEMPEKDLISWNSMIDGYVKHGRIEDAKDLFDVMP 263

Query: 163 ERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIE 222
            R+V+TW +MI GY + G + +   LF ++P ++VV++ +M+ G+  N +H E+L LFI+
Sbjct: 264 RRDVITWATMIDGYAKLGFIHQAKTLFDQIPHRDVVAYNSMMAGYVQNKYHMEALELFIK 323

Query: 223 MKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNL-FDTVPVRDEIS---WTSMIDGYLS 278
           M+   ++  + +  +   +++   + GRL +A ++ F  V  +  I      ++ID Y  
Sbjct: 324 MEK--ESHLSPDETTLVIVLSAIAQLGRLSKAMDMHFYIVKKQFFIGGKLGVALIDMYSK 381

Query: 279 VGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVL 338
            G + +A  +F  + +++   W A+I GL  + L   A  + +++    + P + TF  +
Sbjct: 382 CGSIQHAMLVFKGLENKNIDHWNAIIGGLAIHGLGGPAFDMLLQIERLSIKPDDITFIGV 441

Query: 339 FGAAGATANIDLGRQIHCV-LMKTESESDLILEN--CLISMYAKCGVIDNAYNIFSNM-V 394
             A   +  +  G  + C  LM+ + + +  L++  C++ + ++ G I+ A  +   M +
Sbjct: 442 LNACSHSGLVKEG--LLCFELMRRKHKIEPRLQHYGCMVDILSRSGSIELAKILIEKMPI 499

Query: 395 SRDLVSWNSMVMGFSHHG-LANETLKVFESMLESGTHPNSVTFLG-ILSACSHAGLVSRG 452
             + V W + +   SHH       L     +L++G +P+S   L  + ++C     V R 
Sbjct: 500 EPNDVIWRTFLTACSHHKEFEMGELVAKHLILQAGYNPSSYVLLSNMYASCGMWKDVRR- 558

Query: 453 WELFNAMFDVYKIQPGPEHYVSMINLLGRA 482
                 M    KIQ  P    S I L GR 
Sbjct: 559 ---VRTMMKERKIQKIPG--CSWIELDGRV 583



 Score =  119 bits (297), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 70/302 (23%), Positives = 157/302 (51%), Gaps = 18/302 (5%)

Query: 27  IDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADA 86
           ++ A  LF  MP+++++S+N+M+ G++++GR+ +A+ LF+ MP R+V++W  MI G A  
Sbjct: 221 VNIASKLFSEMPEKDLISWNSMIDGYVKHGRIEDAKDLFDVMPRRDVITWATMIDGYAKL 280

Query: 87  GRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNA-----M 141
           G + +A+ LF+++P R+VV++NSM+ G ++N    EA ++F  M  ++ +S +      +
Sbjct: 281 GFIHQAKTLFDQIPHRDVVAYNSMMAGYVQNKYHMEALELFIKMEKESHLSPDETTLVIV 340

Query: 142 IAGYVECCMMGEAIVLFEEMEERNVVT----WTSMISGYCRAGEVEEGYCLFRRMPRKNV 197
           ++   +   + +A+ +   + ++          ++I  Y + G ++    +F+ +  KN+
Sbjct: 341 LSAIAQLGRLSKAMDMHFYIVKKQFFIGGKLGVALIDMYSKCGSIQHAMLVFKGLENKNI 400

Query: 198 VSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNL 257
             W A+IGG A +G    +  + ++++ +    ++        ++N     G ++E    
Sbjct: 401 DHWNAIIGGLAIHGLGGPAFDMLLQIERLSIKPDDITFI---GVLNACSHSGLVKEGLLC 457

Query: 258 FDTVPVRDEIS-----WTSMIDGYLSVGQVSNAYYLFHNMP-DRDAVAWTAMISGLVQNE 311
           F+ +  + +I      +  M+D     G +  A  L   MP + + V W   ++    ++
Sbjct: 458 FELMRRKHKIEPRLQHYGCMVDILSRSGSIELAKILIEKMPIEPNDVIWRTFLTACSHHK 517

Query: 312 LF 313
            F
Sbjct: 518 EF 519



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 66/281 (23%), Positives = 145/281 (51%), Gaps = 16/281 (5%)

Query: 7   PKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFE 66
           P+  ++   S I  Y K G I++AK LF +MP+R+V+++  M+ G+ + G + +A+ LF+
Sbjct: 232 PEKDLISWNSMIDGYVKHGRIEDAKDLFDVMPRRDVITWATMIDGYAKLGFIHQAKTLFD 291

Query: 67  EMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRN-----GELN 121
           ++P R+VV++ +M+ G        EA +LF +M + + +S +   + ++ +     G L+
Sbjct: 292 QIPHRDVVAYNSMMAGYVQNKYHMEALELFIKMEKESHLSPDETTLVIVLSAIAQLGRLS 351

Query: 122 EARKVFNSMPIKNVISWN----AMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYC 177
           +A  +   +  K          A+I  Y +C  +  A+++F+ +E +N+  W ++I G  
Sbjct: 352 KAMDMHFYIVKKQFFIGGKLGVALIDMYSKCGSIQHAMLVFKGLENKNIDHWNAIIGGLA 411

Query: 178 RAGEVEEGYCLFRRMPRKNV----VSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNC 233
             G     + +  ++ R ++    +++  ++   + +G  KE LL F  M+    +    
Sbjct: 412 IHGLGGPAFDMLLQIERLSIKPDDITFIGVLNACSHSGLVKEGLLCFELMRR--KHKIEP 469

Query: 234 NVQSCNSMINGYIRFGRLEEAQNLFDTVPVR-DEISWTSMI 273
            +Q    M++   R G +E A+ L + +P+  +++ W + +
Sbjct: 470 RLQHYGCMVDILSRSGSIELAKILIEKMPIEPNDVIWRTFL 510



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 72/270 (26%), Positives = 124/270 (45%), Gaps = 17/270 (6%)

Query: 296 DAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIH 355
           D   W A+I           + +LF  M  +GV     + S++  A      +  G  IH
Sbjct: 69  DPFLWNAVIKSHSHGTDPRRSLFLFCLMLENGVSVDKFSLSLVLKACSRLGFVKAGMXIH 128

Query: 356 CVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLAN 415
             L KT   SDL L+NCLI +Y KCG +  +  +F  M  RD VS+NSM+ G+   GL  
Sbjct: 129 GFLRKTGLWSDLFLQNCLIGLYLKCGCLGYSRQVFDRMPQRDSVSYNSMIDGYVKCGLIE 188

Query: 416 ETLKVFESMLESGTHPNSVTFLGILSACSHAGL-VSRGWELFNAMFDVYKIQPGPEHYVS 474
              ++F+ M +     N +++  ++S  +     V+   +LF+ M +   I      + S
Sbjct: 189 SARELFDLMPKE--MKNLISWNCLISGYAQTSDGVNIASKLFSEMPEKDLIS-----WNS 241

Query: 475 MINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIA-EHAAKRLLELDP 533
           MI+   + G+I++A++    +P   D   W  ++      +G A++   H AK L +  P
Sbjct: 242 MIDGYVKHGRIEDAKDLFDVMP-RRDVITWATMI------DGYAKLGFIHQAKTLFDQIP 294

Query: 534 -LNAPAHVVLCNIYAASGRHVEEHKLRMDM 562
             +  A+  +   Y  +  H+E  +L + M
Sbjct: 295 HRDVVAYNSMMAGYVQNKYHMEALELFIKM 324


>gi|255542634|ref|XP_002512380.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223548341|gb|EEF49832.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 736

 Score =  285 bits (730), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 155/456 (33%), Positives = 254/456 (55%), Gaps = 3/456 (0%)

Query: 145 YVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMI 204
           Y +C +  +A+ +F++M  R+ V+W +M+SG+ R G+++ G  +F  M  +NV++WTA+I
Sbjct: 2   YFKCGVFSDAVKVFDDMPTRDTVSWNTMVSGFLRNGDLDTGRQVFDEMLERNVITWTAII 61

Query: 205 GGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVR 264
            G + N  +++SL LF++M+      N     S  +  +G     +  +   L   + ++
Sbjct: 62  SGLSQNEMYEDSLGLFVQMRCGLIEPNFLTYLSSLTACSGLQALEKGRQIHGLVWKLGIQ 121

Query: 265 DEISWTS-MIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEM 323
             +   S ++D Y   G + +A  +F +  + D V+ T ++ G  QN    EA   F++M
Sbjct: 122 SNLCIESALMDLYSKCGSLEDARRVFESAVELDEVSMTVILVGFTQNGFEEEAIEFFVKM 181

Query: 324 RAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVI 383
              G        S + GA G   ++ LG+QIH +++K    S+  + N LI+MY+KCG +
Sbjct: 182 VNIGTEVDPNMVSAVLGACGVDTSLGLGKQIHSLVIKRSLGSNPFVGNGLINMYSKCGEL 241

Query: 384 DNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSAC 443
             +  +F+ +  R+ VSWNSM+  F+ HG     L+++E M++ G  P  +TFL +L AC
Sbjct: 242 QESIKVFNGLTCRNSVSWNSMIAAFARHGDGFRALRLYEEMIQEGAVPTDLTFLSLLHAC 301

Query: 444 SHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRI 503
           SH GLV +G +   +M  VY I P  EHY  ++++LGRAG + EA+  + RL  +PD  I
Sbjct: 302 SHVGLVDKGMKFLKSMTKVYGISPRAEHYACVVDMLGRAGLLNEAKSLIERLSIKPDVLI 361

Query: 504 WGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMG 563
           W ALLGAC    G+ EI ++AA++LL L+P     +V+L NIY++ GR  E  +    M 
Sbjct: 362 WQALLGACSI-RGDTEIGKYAAEQLLLLEPKKPAPYVLLANIYSSKGRWDERARTIKRMK 420

Query: 564 LKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEIL 599
             GV K  G SW+     +  F+  DK   Q AEI+
Sbjct: 421 EMGVAKETGISWIEIEKKVHSFVVEDKKHPQ-AEII 455



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 107/411 (26%), Positives = 184/411 (44%), Gaps = 58/411 (14%)

Query: 21  YSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMI 80
           Y K G   +A  +F  MP R+ VS+N M+SGFL+NG L   R++F+EM ERNV++WTA+I
Sbjct: 2   YFKCGVFSDAVKVFDDMPTRDTVSWNTMVSGFLRNGDLDTGRQVFDEMLERNVITWTAII 61

Query: 81  CGLADAGRVCEARKLFEEMP----ERNVVSWNSMVVGLIRNGELNEARKVFN---SMPIK 133
            GL+      ++  LF +M     E N +++ S +        L + R++      + I+
Sbjct: 62  SGLSQNEMYEDSLGLFVQMRCGLIEPNFLTYLSSLTACSGLQALEKGRQIHGLVWKLGIQ 121

Query: 134 -NVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRM 192
            N+   +A++  Y +C  + +A  +FE   E + V+ T ++ G+ + G  EE    F +M
Sbjct: 122 SNLCIESALMDLYSKCGSLEDARRVFESAVELDEVSMTVILVGFTQNGFEEEAIEFFVKM 181

Query: 193 PR------KNVVSWTAMIGGFAWN---GFHKESLLLFIEMKGICDNGNNCNVQSCNSMIN 243
                    N+VS  A++G    +   G  K+   L I+       G+N  V   N +IN
Sbjct: 182 VNIGTEVDPNMVS--AVLGACGVDTSLGLGKQIHSLVIKRS----LGSNPFVG--NGLIN 233

Query: 244 GYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAM 303
            Y + G L+E+  +F+ +  R+ +SW SMI  +   G    A  L+              
Sbjct: 234 MYSKCGELQESIKVFNGLTCRNSVSWNSMIAAFARHGDGFRALRLYE------------- 280

Query: 304 ISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTES 363
                             EM   G  P + TF  L  A      +D G +    + K   
Sbjct: 281 ------------------EMIQEGAVPTDLTFLSLLHACSHVGLVDKGMKFLKSMTKVYG 322

Query: 364 ESDLILE-NCLISMYAKCGVIDNAYNIFSNM-VSRDLVSWNSMVMGFSHHG 412
            S       C++ M  + G+++ A ++   + +  D++ W +++   S  G
Sbjct: 323 ISPRAEHYACVVDMLGRAGLLNEAKSLIERLSIKPDVLIWQALLGACSIRG 373



 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 61/265 (23%), Positives = 116/265 (43%), Gaps = 49/265 (18%)

Query: 7   PKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFE 66
           P    V   + ++ + + G +D  + +F  M +RNV+++ A++SG  QN    ++  LF 
Sbjct: 19  PTRDTVSWNTMVSGFLRNGDLDTGRQVFDEMLERNVITWTAIISGLSQNEMYEDSLGLFV 78

Query: 67  EMP----ERNVVSW-----------------------------------TAMICGLADAG 87
           +M     E N +++                                   +A++   +  G
Sbjct: 79  QMRCGLIEPNFLTYLSSLTACSGLQALEKGRQIHGLVWKLGIQSNLCIESALMDLYSKCG 138

Query: 88  RVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSM-PIKNVISWNAMIAGYV 146
            + +AR++FE   E + VS   ++VG  +NG   EA + F  M  I   +  N M++  +
Sbjct: 139 SLEDARRVFESAVELDEVSMTVILVGFTQNGFEEEAIEFFVKMVNIGTEVDPN-MVSAVL 197

Query: 147 ECCMMGEAIVLFEEMEE--------RNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVV 198
             C +  ++ L +++           N      +I+ Y + GE++E   +F  +  +N V
Sbjct: 198 GACGVDTSLGLGKQIHSLVIKRSLGSNPFVGNGLINMYSKCGELQESIKVFNGLTCRNSV 257

Query: 199 SWTAMIGGFAWNGFHKESLLLFIEM 223
           SW +MI  FA +G    +L L+ EM
Sbjct: 258 SWNSMIAAFARHGDGFRALRLYEEM 282



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 51/163 (31%), Positives = 78/163 (47%), Gaps = 9/163 (5%)

Query: 376 MYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVT 435
           MY KCGV  +A  +F +M +RD VSWN+MV GF  +G  +   +VF+ MLE     N +T
Sbjct: 1   MYFKCGVFSDAVKVFDDMPTRDTVSWNTMVSGFLRNGDLDTGRQVFDEMLER----NVIT 56

Query: 436 FLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINL---LGRAGKIKEAEEFV 492
           +  I+S  S   +      LF  M     I+P    Y+S +     L    K ++    V
Sbjct: 57  WTAIISGLSQNEMYEDSLGLFVQM-RCGLIEPNFLTYLSSLTACSGLQALEKGRQIHGLV 115

Query: 493 LRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLN 535
            +L  + +  I  AL+     C G+ E A    +  +ELD ++
Sbjct: 116 WKLGIQSNLCIESALMDLYSKC-GSLEDARRVFESAVELDEVS 157



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 56/223 (25%), Positives = 99/223 (44%), Gaps = 23/223 (10%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVV--- 74
           I  YSK G + E+  +F  +  RN VS+N+M++ F ++G    A RL+EEM +   V   
Sbjct: 232 INMYSKCGELQESIKVFNGLTCRNSVSWNSMIAAFARHGDGFRALRLYEEMIQEGAVPTD 291

Query: 75  -SWTAMICGLADAGRVCEARKLFEEMPERNVVS-----WNSMVVGLIRNGELNEARKVFN 128
            ++ +++   +  G V +  K  + M +   +S     +  +V  L R G LNEA+ +  
Sbjct: 292 LTFLSLLHACSHVGLVDKGMKFLKSMTKVYGISPRAEHYACVVDMLGRAGLLNEAKSLIE 351

Query: 129 SMPIK-NVISWNAMIAGYVECCMMGE------AIVLFEEMEERNVVTWTSMISGYCRAGE 181
            + IK +V+ W A++     C + G+      A      +E +    +  + + Y   G 
Sbjct: 352 RLSIKPDVLIWQALLGA---CSIRGDTEIGKYAAEQLLLLEPKKPAPYVLLANIYSSKGR 408

Query: 182 VEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMK 224
            +E     +RM    V   T    G +W    K+     +E K
Sbjct: 409 WDERARTIKRMKEMGVAKET----GISWIEIEKKVHSFVVEDK 447



 Score = 43.5 bits (101), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 37/150 (24%), Positives = 68/150 (45%), Gaps = 10/150 (6%)

Query: 46  NAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVV 105
           N +++ + + G L E+ ++F  +  RN VSW +MI   A  G    A +L+EEM +   V
Sbjct: 229 NGLINMYSKCGELQESIKVFNGLTCRNSVSWNSMIAAFARHGDGFRALRLYEEMIQEGAV 288

Query: 106 SWNSMVVGLIRN----GELNEARKVFNSMPIKNVISWNA-----MIAGYVECCMMGEAIV 156
             +   + L+      G +++  K   SM     IS  A     ++       ++ EA  
Sbjct: 289 PTDLTFLSLLHACSHVGLVDKGMKFLKSMTKVYGISPRAEHYACVVDMLGRAGLLNEAKS 348

Query: 157 LFEEME-ERNVVTWTSMISGYCRAGEVEEG 185
           L E +  + +V+ W +++      G+ E G
Sbjct: 349 LIERLSIKPDVLIWQALLGACSIRGDTEIG 378


>gi|296083564|emb|CBI23556.3| unnamed protein product [Vitis vinifera]
          Length = 827

 Score =  285 bits (730), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 196/660 (29%), Positives = 323/660 (48%), Gaps = 92/660 (13%)

Query: 12  VHLTSSITKYSKRGFIDEAKALFQLMP-QRNVVSYNAMLSGFLQNGRLSEARRLFEEMPE 70
           V L + I+ YSK G  + A+ +F+ M  +R++VS++AM+S F  N    +A   F +M E
Sbjct: 80  VVLNTLISLYSKCGDTETARLIFEGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFLDMLE 139

Query: 71  RNVV------------------SWTAMI------------------CGLAD-----AGRV 89
                                 +W   I                  C L D     +G +
Sbjct: 140 LGFYPNEYCFAAVIRACSNANYAWVGEIIYGFVVKTGYLEADVCVGCELIDMFVKGSGDL 199

Query: 90  CEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECC 149
             A K+F++MPERN+V+W  M+    + G   +A  +F  M +   +      +  +  C
Sbjct: 200 GSAYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSAC 259

Query: 150 MMGEAIVLFEEMEER--------NVVTWTSMISGYCRA---GEVEEGYCLFRRMPRKNVV 198
                + L +++  R        +V    S++  Y +    G V++   +F +MP  NV+
Sbjct: 260 TELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVM 319

Query: 199 SWTAMIGGFAWNG-FHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGR------L 251
           SWTA+I  +  +G   KE++ LF +M                  I+G+IR         L
Sbjct: 320 SWTAIITAYVQSGECDKEAIELFCKM------------------ISGHIRPNHFSFSSVL 361

Query: 252 EEAQNLFDTVPVRDEISWT-------------SMIDGYLSVGQVSNAYYLFHNMPDRDAV 298
           +   NL D        S+              S+I  Y   G++ +A   F  + +++ V
Sbjct: 362 KACGNLSDPYTGEQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLV 421

Query: 299 AWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVL 358
           ++ A++ G  +N    EA  LF E+   G+     TF+ L   A +   +  G QIH  L
Sbjct: 422 SYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRL 481

Query: 359 MKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETL 418
           +K   +S+  + N LISMY++CG I+ A+ +F+ M  R+++SW SM+ GF+ HG A   L
Sbjct: 482 LKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRAL 541

Query: 419 KVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINL 478
           ++F  MLE+GT PN +T++ +LSACSH G++S G + FN+M+  + I P  EHY  M++L
Sbjct: 542 EMFHKMLETGTKPNEITYVAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDL 601

Query: 479 LGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPA 538
           LGR+G + EA EF+  +P   D  +W  LLGAC    GN E+  HAA+ +LE +P +  A
Sbjct: 602 LGRSGLLVEAMEFINSMPLMADALVWRTLLGACRV-HGNTELGRHAAEMILEQEPDDPAA 660

Query: 539 HVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
           +++L N++A++G+  +  K+R  M  + + K  GCSW+     +  F  G+    Q  +I
Sbjct: 661 YILLSNLHASAGQWKDVVKIRKSMKERNLIKEAGCSWIEVENRVHRFHVGETSHPQAWQI 720



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 110/440 (25%), Positives = 204/440 (46%), Gaps = 38/440 (8%)

Query: 1   MSERNHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVV----SYNAMLSGFLQNG 56
           M ERN     +V  T  IT++++ G   +A  LF  M     V    +Y+++LS   + G
Sbjct: 209 MPERN-----LVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTELG 263

Query: 57  RLSEARRLFEEMPERNVVSWTAMICGLADA-------GRVCEARKLFEEMPERNVVSWNS 109
            L+  ++L   +    +     + C L D        G V ++RK+FE+MPE NV+SW +
Sbjct: 264 LLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTA 323

Query: 110 MVVGLIRNGELN-EARKVFNSMPIKNVISWNAMIAGYVECC------MMGEAIVLFE--- 159
           ++   +++GE + EA ++F  M   ++   +   +  ++ C        GE +  +    
Sbjct: 324 IITAYVQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAVKL 383

Query: 160 EMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLL 219
            +   N V   S+IS Y R+G +E+    F  +  KN+VS+ A++ G+A N   +E+ LL
Sbjct: 384 GIASVNCVG-NSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLL 442

Query: 220 FIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQN----LFDTVPVRDEISWTSMIDG 275
           F E   I D G   +  +  S+++G    G + + +     L       ++    ++I  
Sbjct: 443 FNE---IADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISM 499

Query: 276 YLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATF 335
           Y   G +  A+ +F+ M DR+ ++WT+MI+G  ++     A  +F +M   G  P   T+
Sbjct: 500 YSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITY 559

Query: 336 SVLFGAAGATANIDLGRQIHCVLMKTESESDLILEN--CLISMYAKCGVIDNAYNIFSNM 393
             +  A      I  G Q H   M  E      +E+  C++ +  + G++  A    ++M
Sbjct: 560 VAVLSACSHVGMISEG-QKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSM 618

Query: 394 -VSRDLVSWNSMVMGFSHHG 412
            +  D + W +++     HG
Sbjct: 619 PLMADALVWRTLLGACRVHG 638



 Score =  118 bits (296), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 86/351 (24%), Positives = 166/351 (47%), Gaps = 39/351 (11%)

Query: 163 ERNVVTWTSMISGYCRAGEVEEGYCLFRRMP-RKNVVSWTAMIGGFAWNGFHKESLLLFI 221
           E + V   ++IS Y + G+ E    +F  M  ++++VSW+AM+  FA N    +++  F+
Sbjct: 76  ELDSVVLNTLISLYSKCGDTETARLIFEGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFL 135

Query: 222 EM------------KGICDNGNNCNVQSCNSMINGY-IRFGRLEEAQNLFDTVPVRDEIS 268
           +M              +    +N N      +I G+ ++ G LE            D   
Sbjct: 136 DMLELGFYPNEYCFAAVIRACSNANYAWVGEIIYGFVVKTGYLEA-----------DVCV 184

Query: 269 WTSMIDGYLS-VGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHG 327
              +ID ++   G + +AY +F  MP+R+ V WT MI+   Q     +A  LF++M   G
Sbjct: 185 GCELIDMFVKGSGDLGSAYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSG 244

Query: 328 VPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKC---GVID 384
             P   T+S +  A      + LG+Q+H  +++     D+ +   L+ MYAKC   G +D
Sbjct: 245 YVPDRFTYSSVLSACTELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVD 304

Query: 385 NAYNIFSNMVSRDLVSWNSMVMGFSHHGLAN-ETLKVFESMLESGTHPNSVTFLGILSAC 443
           ++  +F  M   +++SW +++  +   G  + E +++F  M+     PN  +F  +L AC
Sbjct: 305 DSRKVFEQMPEHNVMSWTAIITAYVQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKAC 364

Query: 444 SHAGLVSRGWELFNAMFDVYKIQPGPEHY----VSMINLLGRAGKIKEAEE 490
            +      G ++++     Y ++ G         S+I++  R+G++++A +
Sbjct: 365 GNLSDPYTGEQVYS-----YAVKLGIASVNCVGNSLISMYARSGRMEDARK 410



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 86/336 (25%), Positives = 154/336 (45%), Gaps = 46/336 (13%)

Query: 265 DEISWTSMIDGYLSVGQVSNAYYLFHNMPD-RDAVAWTAMISGLVQNELFVEATYLFMEM 323
           D +   ++I  Y   G    A  +F  M + RD V+W+AM+S    N +  +A + F++M
Sbjct: 78  DSVVLNTLISLYSKCGDTETARLIFEGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFLDM 137

Query: 324 RAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTES-ESDLILENCLISMYAK-CG 381
              G  P    F+ +  A        +G  I+  ++KT   E+D+ +   LI M+ K  G
Sbjct: 138 LELGFYPNEYCFAAVIRACSNANYAWVGEIIYGFVVKTGYLEADVCVGCELIDMFVKGSG 197

Query: 382 VIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILS 441
            + +AY +F  M  R+LV+W  M+  F+  G A + + +F  M  SG  P+  T+  +LS
Sbjct: 198 DLGSAYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLS 257

Query: 442 ACSHAGLVSRGWELFN---------------AMFDVYK--------------IQPGPEH- 471
           AC+  GL++ G +L +               ++ D+Y                +  PEH 
Sbjct: 258 ACTELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHN 317

Query: 472 ---YVSMINLLGRAGKI-KEAEEFVLRL---PFEPDHRIWGALLGACGFCEG---NAEIA 521
              + ++I    ++G+  KEA E   ++      P+H  + ++L ACG         ++ 
Sbjct: 318 VMSWTAIITAYVQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVY 377

Query: 522 EHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHK 557
            +A K  L +  +N   + ++ ++YA SGR  +  K
Sbjct: 378 SYAVK--LGIASVNCVGNSLI-SMYARSGRMEDARK 410



 Score = 85.9 bits (211), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 68/226 (30%), Positives = 106/226 (46%), Gaps = 38/226 (16%)

Query: 323 MRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGV 382
           M     PP   T+S+L  +     N  LG+ +H  LM++  E D ++ N LIS+Y+KCG 
Sbjct: 35  MTQQNAPPDLTTYSILLKSCIRFRNFQLGKLVHRKLMQSGLELDSVVLNTLISLYSKCGD 94

Query: 383 IDNAYNIFSNMVS-RDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILS 441
            + A  IF  M + RDLVSW++MV  F+++ +  + +  F  MLE G +PN   F  ++ 
Sbjct: 95  TETARLIFEGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFLDMLELGFYPNEYCFAAVIR 154

Query: 442 ACSHA----------GLVSR----------GWELFNAMF--------DVYKI-QPGPEH- 471
           ACS+A          G V +          G EL + MF          YK+    PE  
Sbjct: 155 ACSNANYAWVGEIIYGFVVKTGYLEADVCVGCELID-MFVKGSGDLGSAYKVFDKMPERN 213

Query: 472 ---YVSMINLLGRAGKIKEAEEFVLRLP---FEPDHRIWGALLGAC 511
              +  MI    + G  ++A +  L +    + PD   + ++L AC
Sbjct: 214 LVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSAC 259


>gi|357143522|ref|XP_003572950.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Brachypodium distachyon]
          Length = 874

 Score =  285 bits (730), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 189/625 (30%), Positives = 313/625 (50%), Gaps = 53/625 (8%)

Query: 15  TSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNV- 73
           T+ +  Y K G +++ + +F+ MP+RNVV++ ++L+G++Q    S+   LF  M    V 
Sbjct: 139 TALVDMYMKCGGVEDGRVVFEGMPKRNVVTWTSLLTGYVQGRACSDVMALFFRMRAEGVW 198

Query: 74  ---VSWTAMICGLADAGRVCEARKLFEEMPE----RNVVSWNSMVVGLIRNGELNEARKV 126
               ++T+++  +A  G V   R++  +  +      V   NS++    + G + EA+ V
Sbjct: 199 PNPFTFTSVLSAVASQGAVDLGRRVHAQSVKFGCRSTVFVCNSLINMYSKCGLVEEAKAV 258

Query: 127 FNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEE----MEERNVVTW------------- 169
           F  M  ++++SWN ++AG +      EA+ LF +    M + +  T+             
Sbjct: 259 FRQMETRDMVSWNTLMAGLLLNEHQLEALQLFHDSRASMAKLSQSTYSTVIKLCANLKQL 318

Query: 170 ----------------------TSMISGYCRAGEVEEGYCLFRRMP-RKNVVSWTAMIGG 206
                                 T+++  Y + GE+++ + +F  MP  +NVVSWTAMIGG
Sbjct: 319 ALARQLHSCVLKHGFHSDGNVMTAIMDAYSKCGELDDAFNIFLLMPGSQNVVSWTAMIGG 378

Query: 207 FAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDE 266
              N     +  LF  M+   ++    N  + ++++   I     +    +  T      
Sbjct: 379 CIQNADIPLAAALFSRMR---EDNVKPNEFTYSTVLTASIPILLPQIHAQIIKTNYQHAP 435

Query: 267 ISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAH 326
              T+++  Y  +G    A  +F  +  +D VAW+AM+S   Q      AT +F++M   
Sbjct: 436 SVGTALLASYSKLGNTEEALSIFKMIDHKDVVAWSAMLSCYSQAGDCDGATNVFIKMSMQ 495

Query: 327 GVPPLNATFSVLFGA-AGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDN 385
           G+ P   T S    A A  TA ID GRQ H + +K   +  + + + L++MYA+ G ID+
Sbjct: 496 GMKPNEFTISSAIDACASPTAGIDQGRQFHAISIKYRYQDAICVGSALVTMYARKGSIDS 555

Query: 386 AYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSH 445
           A  +F     RDLVSWNSM+ G++ HG + E L  F  M   G   +  TFL ++  C+H
Sbjct: 556 ARIVFERQTDRDLVSWNSMISGYAQHGYSKEALDTFRQMETVGIEMDGATFLAVIVGCTH 615

Query: 446 AGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWG 505
           AGLV  G + F++M   + I P  EHY  M++L  RAGK+ E    +  +PF     +W 
Sbjct: 616 AGLVKEGQQYFDSMVMDHNISPTMEHYSCMVDLYSRAGKLDETMNLIEGMPFPAGAMVWR 675

Query: 506 ALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLK 565
            LLGAC     N E+ + AA++LL L+P ++  +V+L NIYAA+GR  E  ++R  M  K
Sbjct: 676 TLLGACRV-HKNVELGKLAAQKLLLLEPDDSATYVLLSNIYAAAGRWKERDEVRKLMDSK 734

Query: 566 GVRKVPGCSWLMRNGGIQMFLSGDK 590
            V+K  GCSW+     +  F++ DK
Sbjct: 735 KVKKEAGCSWIQIKNKVHSFIACDK 759


>gi|15223099|ref|NP_172286.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174869|sp|Q9LN01.1|PPR21_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g08070
 gi|8778839|gb|AAF79838.1|AC026875_18 T6D22.15 [Arabidopsis thaliana]
 gi|332190118|gb|AEE28239.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 741

 Score =  285 bits (730), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 188/559 (33%), Positives = 296/559 (52%), Gaps = 26/559 (4%)

Query: 58  LSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPE----RNVVSWNSMVVG 113
           L  A  +F+ + E N++ W  M  G A +     A KL+  M       N  ++  ++  
Sbjct: 84  LPYAISVFKTIQEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFVLKS 143

Query: 114 LIRNGELNEARKVFNSMPIK-----NVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVT 168
             ++    E +++   + +K     ++    ++I+ YV+   + +A  +F++   R+VV+
Sbjct: 144 CAKSKAFKEGQQIHGHV-LKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHRDVVS 202

Query: 169 WTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGI-- 226
           +T++I GY   G +E    LF  +P K+VVSW AMI G+A  G +KE+L LF +M     
Sbjct: 203 YTALIKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNV 262

Query: 227 -CDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWT-SMIDGYLSVGQVSN 284
             D      V S  +  +G I  GR  +     D       +    ++ID Y   G++  
Sbjct: 263 RPDESTMVTVVSACAQ-SGSIELGR--QVHLWIDDHGFGSNLKIVNALIDLYSKCGELET 319

Query: 285 AYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGA 344
           A  LF  +P +D ++W  +I G     L+ EA  LF EM   G  P + T   +  A   
Sbjct: 320 ACGLFERLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAH 379

Query: 345 TANIDLGRQIHCVLMK-----TESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLV 399
              ID+GR IH  + K     T + S   L   LI MYAKCG I+ A+ +F++++ + L 
Sbjct: 380 LGAIDIGRWIHVYIDKRLKGVTNASS---LRTSLIDMYAKCGDIEAAHQVFNSILHKSLS 436

Query: 400 SWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAM 459
           SWN+M+ GF+ HG A+ +  +F  M + G  P+ +TF+G+LSACSH+G++  G  +F  M
Sbjct: 437 SWNAMIFGFAMHGRADASFDLFSRMRKIGIQPDDITFVGLLSACSHSGMLDLGRHIFRTM 496

Query: 460 FDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAE 519
              YK+ P  EHY  MI+LLG +G  KEAEE +  +  EPD  IW +LL AC    GN E
Sbjct: 497 TQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINMMEMEPDGVIWCSLLKACKM-HGNVE 555

Query: 520 IAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRN 579
           + E  A+ L++++P N  ++V+L NIYA++GR  E  K R  +  KG++KVPGCS +  +
Sbjct: 556 LGESFAENLIKIEPENPGSYVLLSNIYASAGRWNEVAKTRALLNDKGMKKVPGCSSIEID 615

Query: 580 GGIQMFLSGDKIPAQVAEI 598
             +  F+ GDK   +  EI
Sbjct: 616 SVVHEFIIGDKFHPRNREI 634



 Score =  185 bits (469), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 116/413 (28%), Positives = 213/413 (51%), Gaps = 22/413 (5%)

Query: 96  FEEMPERNVVSWNSM----VVGLIRNGELNEARKVFNSMPIK-NVISWNAMIAGYVECCM 150
           F  +P  +   ++S+     + L+ N +  ++ ++ ++  IK  + + N  ++  +E C+
Sbjct: 17  FHFLPSSSDPPYDSIRNHPSLSLLHNCKTLQSLRIIHAQMIKIGLHNTNYALSKLIEFCI 76

Query: 151 MGE-------AIVLFEEMEERNVVTWTSMISGYCRAGE----VEEGYCLFRRMPRKNVVS 199
           +         AI +F+ ++E N++ W +M  G+  + +    ++   C+       N  +
Sbjct: 77  LSPHFEGLPYAISVFKTIQEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYT 136

Query: 200 WTAMIGGFAWNGFHKESLLLFIEMKG-ICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLF 258
           +  ++   A +   KE      ++ G +   G + ++    S+I+ Y++ GRLE+A  +F
Sbjct: 137 FPFVLKSCAKSKAFKEGQ----QIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVF 192

Query: 259 DTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATY 318
           D  P RD +S+T++I GY S G + NA  LF  +P +D V+W AMISG  +   + EA  
Sbjct: 193 DKSPHRDVVSYTALIKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALE 252

Query: 319 LFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYA 378
           LF +M    V P  +T   +  A   + +I+LGRQ+H  +      S+L + N LI +Y+
Sbjct: 253 LFKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYS 312

Query: 379 KCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLG 438
           KCG ++ A  +F  +  +D++SWN+++ G++H  L  E L +F+ ML SG  PN VT L 
Sbjct: 313 KCGELETACGLFERLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLS 372

Query: 439 ILSACSHAGLVSRG-WELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEE 490
           IL AC+H G +  G W        +  +        S+I++  + G I+ A +
Sbjct: 373 ILPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQ 425



 Score =  169 bits (429), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 131/466 (28%), Positives = 215/466 (46%), Gaps = 62/466 (13%)

Query: 41  NVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMP 100
           ++  + +++S ++QNGRL +A ++F++ P R+VVS+TA+I G A  G +  A+KLF+E+P
Sbjct: 168 DLYVHTSLISMYVQNGRLEDAHKVFDKSPHRDVVSYTALIKGYASRGYIENAQKLFDEIP 227

Query: 101 ERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEE 160
            ++VVSWN+M+ G    G   EA ++F  M   NV    + +   V  C    +I L  +
Sbjct: 228 VKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQ 287

Query: 161 ME--------ERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGF 212
           +           N+    ++I  Y + GE+E    LF R+P K+V+SW  +IGG+     
Sbjct: 288 VHLWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFERLPYKDVISWNTLIGGYTHMNL 347

Query: 213 HKESLLLFIEMKGICDNGNNCNVQS----CNSMINGYIRFGRL------EEAQNLFDTVP 262
           +KE+LLLF EM    +  N+  + S    C  +  G I  GR       +  + + +   
Sbjct: 348 YKEALLLFQEMLRSGETPNDVTMLSILPACAHL--GAIDIGRWIHVYIDKRLKGVTNASS 405

Query: 263 VRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFME 322
           +R     TS+ID Y   G +  A+ +F+++  +   +W AMI G   +     +  LF  
Sbjct: 406 LR-----TSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADASFDLFSR 460

Query: 323 MRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGV 382
           MR  G+ P + TF  L  A   +  +DLGR I   + +                      
Sbjct: 461 MRKIGIQPDDITFVGLLSACSHSGMLDLGRHIFRTMTQDYK------------------- 501

Query: 383 IDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSA 442
                      ++  L  +  M+    H GL  E  ++   M      P+ V +  +L A
Sbjct: 502 -----------MTPKLEHYGCMIDLLGHSGLFKEAEEMINMMEME---PDGVIWCSLLKA 547

Query: 443 CSHAGLVSRGWELFNAMFDVYKIQP-GPEHYVSMINLLGRAGKIKE 487
           C   G V  G E F    ++ KI+P  P  YV + N+   AG+  E
Sbjct: 548 CKMHGNVELG-ESFAE--NLIKIEPENPGSYVLLSNIYASAGRWNE 590



 Score =  131 bits (330), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 91/297 (30%), Positives = 136/297 (45%), Gaps = 81/297 (27%)

Query: 10  LVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMP 69
           L VH TS I+ Y + G +++A  +F   P R+VVSY A++ G+   G +  A++LF+E+P
Sbjct: 169 LYVH-TSLISMYVQNGRLEDAHKVFDKSPHRDVVSYTALIKGYASRGYIENAQKLFDEIP 227

Query: 70  ERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLI-------------- 115
            ++VVSW AMI G A+ G   EA +LF++M + NV    S +V ++              
Sbjct: 228 VKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQ 287

Query: 116 -------------------------RNGELNEARKVFNSMPIKNVISWNAMIAGYVECCM 150
                                    + GEL  A  +F  +P K+VISWN +I GY    +
Sbjct: 288 VHLWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFERLPYKDVISWNTLIGGYTHMNL 347

Query: 151 MGEAIVLFEEM----EERNVVT------------------W------------------- 169
             EA++LF+EM    E  N VT                  W                   
Sbjct: 348 YKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLR 407

Query: 170 TSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGI 226
           TS+I  Y + G++E  + +F  +  K++ SW AMI GFA +G    S  LF  M+ I
Sbjct: 408 TSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADASFDLFSRMRKI 464


>gi|225450537|ref|XP_002277327.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g56570 [Vitis vinifera]
          Length = 607

 Score =  285 bits (730), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 185/577 (32%), Positives = 290/577 (50%), Gaps = 51/577 (8%)

Query: 36  LMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKL 95
            +P+   V    ++  +   G + EAR LF+EMPER+VV+WT MI G         A  +
Sbjct: 37  FIPKGPSVLATTLIKSYFGKGLIGEARTLFDEMPERDVVAWTVMIAGYTSCNNHTHAWMV 96

Query: 96  FEEMP----ERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISW-----NAMIAGYV 146
           F EM     + N  + +S++        L+  R V + + IK+ +       NA++  Y 
Sbjct: 97  FCEMMNEELDPNAFTISSVLKACKGMKCLSYGRLV-HGLAIKHGLDGFIYVDNALMDMYA 155

Query: 147 ECCM-MGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRK----NVVSWT 201
            CC+ M +A ++F  +  +N V+WT++I+GY    +   G  +FR+M  +    N  S++
Sbjct: 156 TCCVSMDDACMVFRGIHLKNEVSWTTLIAGYTHRDDGYGGLRVFRQMLLEEVELNPFSFS 215

Query: 202 AMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTV 261
             +      G H     L      +  +G   N+   NS+++ Y R     EA   F  +
Sbjct: 216 IAVRACTSIGSHTFGEQLH---AAVTKHGFESNLPVMNSILDMYCRCSCFSEANRYFYEM 272

Query: 262 PVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFM 321
             RD I+W ++I GY    + SN                              E+ Y+F 
Sbjct: 273 NQRDLITWNTLIAGY----ERSNP----------------------------TESLYVFS 300

Query: 322 EMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCG 381
            M + G  P   TF+ +  A    A ++ G+QIH  +++   + +L L N LI MY+KCG
Sbjct: 301 MMESEGFSPNCFTFTSIMAACATLAFLNCGQQIHGRIIRRGLDGNLALSNALIDMYSKCG 360

Query: 382 VIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILS 441
            I +++ +F  M  RDLVSW +M++G+  HG   E +++F+ M+ SG  P+ V F+ ILS
Sbjct: 361 NIADSHQVFGGMSRRDLVSWTAMMIGYGTHGYGEEAVELFDKMVRSGIRPDRVVFMAILS 420

Query: 442 ACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDH 501
           ACSHAGLV  G   F  M   Y I P  E Y  +++LLGRAGK++EA E +  +PF+PD 
Sbjct: 421 ACSHAGLVDEGLRYFKLMVGDYNISPDQEIYGCVVDLLGRAGKVEEAYELIESMPFKPDE 480

Query: 502 RIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMD 561
            +WG  LGAC        + + AA R+L+L P  A  +V+L NIYAA G+  E  +LR  
Sbjct: 481 CVWGPFLGACK-AHTFPNLGKLAAHRILDLRPHMAGTYVMLSNIYAADGKWGEFARLRKL 539

Query: 562 MGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
           M   G +K  G SW+     +  F+ GD++ +++  I
Sbjct: 540 MKRMGNKKETGRSWVEVGNHVYSFVVGDEVGSKIEGI 576



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 80/357 (22%), Positives = 150/357 (42%), Gaps = 62/357 (17%)

Query: 27  IDEAKALFQLMPQRNVVSYNAMLSGFLQN----GRLSEARRLFEEMPERNVVSWTAMICG 82
           +D+A  +F+ +  +N VS+  +++G+       G L   R++  E  E N  S++  +  
Sbjct: 161 MDDACMVFRGIHLKNEVSWTTLIAGYTHRDDGYGGLRVFRQMLLEEVELNPFSFSIAVRA 220

Query: 83  LADAGRVCEARKLFEEMP----ERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISW 138
               G      +L   +     E N+   NS++    R    +EA + F  M  +++I+W
Sbjct: 221 CTSIGSHTFGEQLHAAVTKHGFESNLPVMNSILDMYCRCSCFSEANRYFYEMNQRDLITW 280

Query: 139 NAMIAGYVECCMMGEAIVLFEEMEER----NVVTWTS----------------------- 171
           N +IAGY E     E++ +F  ME      N  T+TS                       
Sbjct: 281 NTLIAGY-ERSNPTESLYVFSMMESEGFSPNCFTFTSIMAACATLAFLNCGQQIHGRIIR 339

Query: 172 ------------MISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLL 219
                       +I  Y + G + + + +F  M R+++VSWTAM+ G+  +G+ +E++ L
Sbjct: 340 RGLDGNLALSNALIDMYSKCGNIADSHQVFGGMSRRDLVSWTAMMIGYGTHGYGEEAVEL 399

Query: 220 FIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLF-----DTVPVRDEISWTSMID 274
           F +M     +G   +     ++++     G ++E    F     D     D+  +  ++D
Sbjct: 400 FDKM---VRSGIRPDRVVFMAILSACSHAGLVDEGLRYFKLMVGDYNISPDQEIYGCVVD 456

Query: 275 GYLSVGQVSNAYYLFHNMPDR-DAVAWTAMISGLVQNELFVE----ATYLFMEMRAH 326
                G+V  AY L  +MP + D   W   + G  +   F      A +  +++R H
Sbjct: 457 LLGRAGKVEEAYELIESMPFKPDECVWGPFL-GACKAHTFPNLGKLAAHRILDLRPH 512



 Score = 55.8 bits (133), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 40/127 (31%), Positives = 67/127 (52%), Gaps = 13/127 (10%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEM------PER 71
           I  YSK G I ++  +F  M +R++VS+ AM+ G+  +G   EA  LF++M      P+R
Sbjct: 353 IDMYSKCGNIADSHQVFGGMSRRDLVSWTAMMIGYGTHGYGEEAVELFDKMVRSGIRPDR 412

Query: 72  NVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLI-----RNGELNEARKV 126
             V + A++   + AG V E  + F+ M     +S +  + G +     R G++ EA ++
Sbjct: 413 --VVFMAILSACSHAGLVDEGLRYFKLMVGDYNISPDQEIYGCVVDLLGRAGKVEEAYEL 470

Query: 127 FNSMPIK 133
             SMP K
Sbjct: 471 IESMPFK 477


>gi|326518042|dbj|BAK07273.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 527

 Score =  285 bits (730), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 159/468 (33%), Positives = 249/468 (53%), Gaps = 41/468 (8%)

Query: 118 GELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNV----VTWTSMI 173
           G L  ARKVF+ MP + V+ WN M+  YV C    EA+ L EEME   +    VT  + +
Sbjct: 95  GRLEAARKVFDEMPQRAVVVWNMMLRCYVRCGRNTEAVALAEEMERGRLTPDRVTLLTAL 154

Query: 174 SGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNC 233
           +   RAG++  G         + + ++   + GF                          
Sbjct: 155 TACSRAGDLSLG---------RKIHAYMDGVTGF-------------------------- 179

Query: 234 NVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMP 293
           ++   N++++ Y++ G LEEA NLF+ +P R+ +SWT+++ GY   GQV  A  LFH   
Sbjct: 180 SLPVANALLDMYVKNGCLEEAVNLFEKMPSRNVVSWTTLVSGYAFAGQVDKARLLFHQCT 239

Query: 294 DRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQ 353
           ++D + WTAMI+  VQ+  F+EA  LF +M+ H + P   T   L         +D G+ 
Sbjct: 240 EKDLIMWTAMINAYVQHGCFIEALSLFRDMQMHQIEPDRFTVVTLLTCCANLGALDQGQL 299

Query: 354 IHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGL 413
           IH        + D +L   LI MYAKCG ++ +  +F  M  RD  +W +++ G + +G 
Sbjct: 300 IHQFAEGRNMKLDAVLGTALIDMYAKCGHVEKSVEVFERMEGRDTKAWTAIICGLATNGQ 359

Query: 414 ANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYV 473
           A   L++FE M  S   P+SVTF+G+LSAC H GLV  G + F AM +VY+I+P  EHY 
Sbjct: 360 AGRALELFEDMERSEAKPDSVTFIGVLSACCHGGLVDEGRKQFRAMKEVYRIRPRVEHYS 419

Query: 474 SMINLLGRAGKIKEAEEFVLRLPFEPDHR-IWGALLGACGFCEGNAEIAEHAAKRLLELD 532
            ++NLLGRAG++ EAE+ +  +P   D   ++GAL+ AC   +GN +++E   KR+ +  
Sbjct: 420 CLVNLLGRAGQLDEAEKLIKSIPINKDAMPLFGALITACK-AQGNVKMSERLTKRIGKQG 478

Query: 533 PLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNG 580
                 ++++ N+YA + R  +  ++R  M    V+K  GCS +   G
Sbjct: 479 YQIPDVNLLMSNVYATASRWEDVVRVRSKMAHPSVKKNAGCSLIEVKG 526



 Score =  152 bits (385), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 110/373 (29%), Positives = 181/373 (48%), Gaps = 31/373 (8%)

Query: 41  NVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEM- 99
           +  + ++++  +   GRL  AR++F+EMP+R VV W  M+      GR  EA  L EEM 
Sbjct: 80  DAYTASSLMDMYTMLGRLEAARKVFDEMPQRAVVVWNMMLRCYVRCGRNTEAVALAEEME 139

Query: 100 -----PERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISW---NAMIAGYVECCMM 151
                P+R  V+  + +    R G+L+  RK+   M      S    NA++  YV+   +
Sbjct: 140 RGRLTPDR--VTLLTALTACSRAGDLSLGRKIHAYMDGVTGFSLPVANALLDMYVKNGCL 197

Query: 152 GEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNG 211
            EA+ LFE+M  RNVV+WT+++SGY  AG+V++   LF +   K+++ WTAMI  +  +G
Sbjct: 198 EEAVNLFEKMPSRNVVSWTTLVSGYAFAGQVDKARLLFHQCTEKDLIMWTAMINAYVQHG 257

Query: 212 FHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVR----DEI 267
              E+L LF +M+      +   V    +++      G L++ Q +      R    D +
Sbjct: 258 CFIEALSLFRDMQMHQIEPDRFTVV---TLLTCCANLGALDQGQLIHQFAEGRNMKLDAV 314

Query: 268 SWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHG 327
             T++ID Y   G V  +  +F  M  RD  AWTA+I GL  N     A  LF +M    
Sbjct: 315 LGTALIDMYAKCGHVEKSVEVFERMEGRDTKAWTAIICGLATNGQAGRALELFEDMERSE 374

Query: 328 VPPLNATFSVLFGAAGATANIDLGR-------QIHCVLMKTESESDLILENCLISMYAKC 380
             P + TF  +  A      +D GR       +++ +  + E  S      CL+++  + 
Sbjct: 375 AKPDSVTFIGVLSACCHGGLVDEGRKQFRAMKEVYRIRPRVEHYS------CLVNLLGRA 428

Query: 381 GVIDNAYNIFSNM 393
           G +D A  +  ++
Sbjct: 429 GQLDEAEKLIKSI 441



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 97/360 (26%), Positives = 166/360 (46%), Gaps = 37/360 (10%)

Query: 15  TSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEM------ 68
           +S +  Y+  G ++ A+ +F  MPQR VV +N ML  +++ GR +EA  L EEM      
Sbjct: 85  SSLMDMYTMLGRLEAARKVFDEMPQRAVVVWNMMLRCYVRCGRNTEAVALAEEMERGRLT 144

Query: 69  PERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSW---NSMVVGLIRNGELNEARK 125
           P+R  V+    +   + AG +   RK+   M      S    N+++   ++NG L EA  
Sbjct: 145 PDR--VTLLTALTACSRAGDLSLGRKIHAYMDGVTGFSLPVANALLDMYVKNGCLEEAVN 202

Query: 126 VFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEG 185
           +F  MP +NV+SW  +++GY     + +A +LF +  E++++ WT+MI+ Y + G   E 
Sbjct: 203 LFEKMPSRNVVSWTTLVSGYAFAGQVDKARLLFHQCTEKDLIMWTAMINAYVQHGCFIEA 262

Query: 186 YCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGN---------NCNVQ 236
             LFR M    +            + F   +LL      G  D G          N  + 
Sbjct: 263 LSLFRDMQMHQIEP----------DRFTVVTLLTCCANLGALDQGQLIHQFAEGRNMKLD 312

Query: 237 SC--NSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNM-- 292
           +    ++I+ Y + G +E++  +F+ +  RD  +WT++I G  + GQ   A  LF +M  
Sbjct: 313 AVLGTALIDMYAKCGHVEKSVEVFERMEGRDTKAWTAIICGLATNGQAGRALELFEDMER 372

Query: 293 --PDRDAVAWTAMISGLVQNELFVEATYLFMEMR-AHGVPPLNATFSVLFGAAGATANID 349
                D+V +  ++S      L  E    F  M+  + + P    +S L    G    +D
Sbjct: 373 SEAKPDSVTFIGVLSACCHGGLVDEGRKQFRAMKEVYRIRPRVEHYSCLVNLLGRAGQLD 432



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 85/308 (27%), Positives = 146/308 (47%), Gaps = 44/308 (14%)

Query: 3   ERNHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSY---NAMLSGFLQNGRLS 59
           ER       V L +++T  S+ G +   + +   M      S    NA+L  +++NG L 
Sbjct: 139 ERGRLTPDRVTLLTALTACSRAGDLSLGRKIHAYMDGVTGFSLPVANALLDMYVKNGCLE 198

Query: 60  EARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGE 119
           EA  LFE+MP RNVVSWT ++ G A AG+V +AR LF +  E++++ W +M+   +++G 
Sbjct: 199 EAVNLFEKMPSRNVVSWTTLVSGYAFAGQVDKARLLFHQCTEKDLIMWTAMINAYVQHGC 258

Query: 120 LNEARKVFNSMPIKNVISWNAMIAGYVECC----MMGEAIVLFEEMEERNV----VTWTS 171
             EA  +F  M +  +      +   + CC     + +  ++ +  E RN+    V  T+
Sbjct: 259 FIEALSLFRDMQMHQIEPDRFTVVTLLTCCANLGALDQGQLIHQFAEGRNMKLDAVLGTA 318

Query: 172 MISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMK------- 224
           +I  Y + G VE+   +F RM  ++  +WTA+I G A NG    +L LF +M+       
Sbjct: 319 LIDMYAKCGHVEKSVEVFERMEGRDTKAWTAIICGLATNGQAGRALELFEDMERSEAKPD 378

Query: 225 --------------GICDNGNN------------CNVQSCNSMINGYIRFGRLEEAQNLF 258
                         G+ D G                V+  + ++N   R G+L+EA+ L 
Sbjct: 379 SVTFIGVLSACCHGGLVDEGRKQFRAMKEVYRIRPRVEHYSCLVNLLGRAGQLDEAEKLI 438

Query: 259 DTVPVRDE 266
            ++P+  +
Sbjct: 439 KSIPINKD 446



 Score = 68.9 bits (167), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 63/265 (23%), Positives = 111/265 (41%), Gaps = 7/265 (2%)

Query: 303 MISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTE 362
           +I  L +     +   ++ ++R  G+   + T+  +  A GA      GR+ H   +KT 
Sbjct: 17  LIRTLARRSSHADVMAVYYDLRERGLVADSFTYPFVLRAIGALQISVEGRKAHAATLKTG 76

Query: 363 SESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFE 422
              D    + L+ MY   G ++ A  +F  M  R +V WN M+  +   G   E + + E
Sbjct: 77  FRWDAYTASSLMDMYTMLGRLEAARKVFDEMPQRAVVVWNMMLRCYVRCGRNTEAVALAE 136

Query: 423 SMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRA 482
            M      P+ VT L  L+ACS AG +S G ++   M  V        +  +++++  + 
Sbjct: 137 EMERGRLTPDRVTLLTALTACSRAGDLSLGRKIHAYMDGVTGFSLPVAN--ALLDMYVKN 194

Query: 483 GKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVL 542
           G ++EA     ++P   +   W  L+    F  G  + A     +  E D +   A +  
Sbjct: 195 GCLEEAVNLFEKMP-SRNVVSWTTLVSGYAFA-GQVDKARLLFHQCTEKDLIMWTAMI-- 250

Query: 543 CNIYAASGRHVEEHKLRMDMGLKGV 567
            N Y   G  +E   L  DM +  +
Sbjct: 251 -NAYVQHGCFIEALSLFRDMQMHQI 274


>gi|224120036|ref|XP_002318226.1| predicted protein [Populus trichocarpa]
 gi|222858899|gb|EEE96446.1| predicted protein [Populus trichocarpa]
          Length = 501

 Score =  285 bits (730), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 182/559 (32%), Positives = 276/559 (49%), Gaps = 104/559 (18%)

Query: 42  VVSYNAMLSGFLQNGRLSEARRLFEEMPERNV----VSWTAMI---CGLADAGR----VC 90
           +V +NAM+ G+  NG   E  R+F+EMP+R +     ++  +I   C L   GR     C
Sbjct: 19  IVIWNAMIRGYAFNGPFQECIRMFDEMPQRGLKPHNFTYPYVINSCCELEWYGRGKRVHC 78

Query: 91  EARK---------------LFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNV 135
           E  K               ++ +MP        S  VGL  N +L+ ARK+F+ M ++ V
Sbjct: 79  EIVKSGFESSYAVANSLFNMYLKMPA-------SFDVGLASNCKLDYARKIFDDMCVRPV 131

Query: 136 ISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRK 195
             WN MI  YV    +  A  LF+ M ER++V+W SMI GY + G+V     LF +MP K
Sbjct: 132 ELWNQMIGKYVNIGDVKSARELFDIMPERDIVSWNSMILGYAKGGKVANARGLFEKMPEK 191

Query: 196 NVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQ 255
           NV+SWT+MIG +A                   D  +                   LE A+
Sbjct: 192 NVISWTSMIGAYA-------------------DTDD-------------------LETAR 213

Query: 256 NLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVE 315
           + F+T+P R+ +SW SMI  Y   G+                               FVE
Sbjct: 214 SFFETMPQRNVVSWNSMISSYAKHGK-------------------------------FVE 242

Query: 316 ATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLIS 375
           +  LF++M++ GV P   TF  +  A     +++ G+ IH  L    S+S++++   L  
Sbjct: 243 SLNLFVQMQSEGVTPDGYTFVSVLSACSNLGDLEFGKYIH-YLSGDLSQSEVMVGTALTE 301

Query: 376 MYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVT 435
           MYA+CG +D A+ +F  +  RD+  WN ++   + HG + E +K+F  M ++G  PN  T
Sbjct: 302 MYAQCGDVDKAFAVFIKIGKRDVFCWNVIIKALALHGRSEEAIKIFLLMRKTGLKPNDFT 361

Query: 436 FLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRL 495
           F   L ACSH GLV  G  +FN+M   YKI P   HY  +I++L R G+++EA   V  +
Sbjct: 362 FTSALFACSHGGLVEEGHIIFNSMEKDYKIIPKITHYGCLIDMLCRNGQLEEAMLLVEDM 421

Query: 496 PFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEE 555
           PF+PD  IWGALLG C    G+ ++AE   ++  E++   +  +V+L NI+A++G+ +E 
Sbjct: 422 PFQPDVAIWGALLGGCR-VTGDLKLAEKVVEKATEMETNESGVYVLLSNIHASAGQWIEA 480

Query: 556 HKLRMDMGLKGVRKVPGCS 574
              R  M  K + K  G S
Sbjct: 481 ADARKKMDEKKISKKTGSS 499



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 92/302 (30%), Positives = 161/302 (53%), Gaps = 16/302 (5%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWT 77
           I KY   G +  A+ LF +MP+R++VS+N+M+ G+ + G+++ AR LFE+MPE+NV+SWT
Sbjct: 138 IGKYVNIGDVKSARELFDIMPERDIVSWNSMILGYAKGGKVANARGLFEKMPEKNVISWT 197

Query: 78  AMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVIS 137
           +MI   AD   +  AR  FE MP+RNVVSWNSM+    ++G+  E+  +F  M  + V  
Sbjct: 198 SMIGAYADTDDLETARSFFETMPQRNVVSWNSMISSYAKHGKFVESLNLFVQMQSEGVTP 257

Query: 138 WNAMIAGYVECCM------MGEAI-VLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFR 190
                   +  C        G+ I  L  ++ +  V+  T++   Y + G+V++ + +F 
Sbjct: 258 DGYTFVSVLSACSNLGDLEFGKYIHYLSGDLSQSEVMVGTALTEMYAQCGDVDKAFAVFI 317

Query: 191 RMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGR 250
           ++ +++V  W  +I   A +G  +E++ +F+ M+     G   N  +  S +      G 
Sbjct: 318 KIGKRDVFCWNVIIKALALHGRSEEAIKIFLLMR---KTGLKPNDFTFTSALFACSHGGL 374

Query: 251 LEEAQNLFDTVPVRDEI-----SWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVA-WTAMI 304
           +EE   +F+++    +I      +  +ID     GQ+  A  L  +MP +  VA W A++
Sbjct: 375 VEEGHIIFNSMEKDYKIIPKITHYGCLIDMLCRNGQLEEAMLLVEDMPFQPDVAIWGALL 434

Query: 305 SG 306
            G
Sbjct: 435 GG 436


>gi|224135349|ref|XP_002322051.1| predicted protein [Populus trichocarpa]
 gi|222869047|gb|EEF06178.1| predicted protein [Populus trichocarpa]
          Length = 924

 Score =  285 bits (730), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 194/632 (30%), Positives = 306/632 (48%), Gaps = 59/632 (9%)

Query: 21  YSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEM-------PERNV 73
           Y K G +DEA  +F  MP+ N+VS+N+M+  F +NG   ++  L  EM       P+   
Sbjct: 191 YGKCGAVDEAMKVFDFMPETNLVSWNSMICAFSENGFSRDSFDLLMEMLGEEGLLPDVVT 250

Query: 74  VSWTAMIC---GLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSM 130
           V     +C   G  D G       +   + E  +V+ N+MV    + G LNEA+  F   
Sbjct: 251 VVTILPVCAGEGEVDIGMGIHGLAVKLGLSEEVMVN-NAMVYMYSKCGYLNEAQMSFVKN 309

Query: 131 PIKNVISWNAMIAGYVECCMMGEAIVLFEEME------ERNVVTW--------------- 169
             KNV+SWN MI+ +     + EA  L +EM+      + N VT                
Sbjct: 310 NNKNVVSWNTMISAFSLEGDVNEAFNLLQEMQIQGEEMKANEVTILNVLPACLDKLQLRS 369

Query: 170 -------------------TSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWN 210
                               + I  Y + G +     +F  +  K V SW A+IGG A N
Sbjct: 370 LKELHGYSFRHCFQHVELSNAFILAYAKCGALNSAEKVFHGIGDKTVSSWNALIGGHAQN 429

Query: 211 GFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVR----DE 266
           G  +++L L  +M     +G   +  + +S++        L+  + +   V       D 
Sbjct: 430 GDPRKALHLLFQMTY---SGQQPDWFTISSLLLACAHLKSLQYGKEIHGYVLRNGLETDF 486

Query: 267 ISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAH 326
              TS++  Y+  G+ S+A  LF  M D++ V+W AMISG  QN L  E+  LF +  + 
Sbjct: 487 FVGTSLLSHYIHCGKASSARVLFDRMKDKNLVSWNAMISGYSQNGLPYESLALFRKSLSE 546

Query: 327 GVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNA 386
           G+         +FGA    + + LG++ H  ++K     D  +   +I MYAK G I  +
Sbjct: 547 GIQSHEIAIVSVFGACSQLSALRLGKEAHGYVLKALQTEDAFVGCSIIDMYAKSGCIKES 606

Query: 387 YNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHA 446
             +F  +  +++ SWN++++    HG   E ++++E M + G  P+  T++GIL AC HA
Sbjct: 607 RKVFDGLKDKNVASWNAIIVAHGIHGHGKEAIELYERMKKVGQMPDRFTYIGILMACGHA 666

Query: 447 GLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGA 506
           GLV  G + F  M +   I+P  EHY  +I++L RAG++ +A   V  +P E D+RIW +
Sbjct: 667 GLVEEGLKYFKEMQNFNLIEPKLEHYACLIDMLARAGRLDDALRLVNEMPEEADNRIWSS 726

Query: 507 LLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKG 566
           LL +C    G  EI E  AK+LLEL+P  A  +V+L N+YA  G+     ++R  M   G
Sbjct: 727 LLRSCR-TFGALEIGEKVAKKLLELEPDKAENYVLLSNLYAGLGKWDGVRRVRQMMKEIG 785

Query: 567 VRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
           ++K  GCSW+   G +  F+ GD +  + AEI
Sbjct: 786 LQKDAGCSWIEVGGRVYSFVVGDSLQPKSAEI 817



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 105/421 (24%), Positives = 174/421 (41%), Gaps = 72/421 (17%)

Query: 77  TAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVF-NSMPIKNV 135
           T +I   A  G   ++R +F+ M  +N++ WN++V G  RNG   +  KVF + +   + 
Sbjct: 83  TRLIKMYAMCGSPLDSRLVFDNMETKNLIQWNALVSGYTRNGLYGDVVKVFMDLVSDTDF 142

Query: 136 ISWNAMIAGYVECC------MMGEAI--VLFEEMEERNVVTWTSMISGYCRAGEVEEGYC 187
              N      ++ C       +GE I  ++ +     +V    +++  Y + G V+E   
Sbjct: 143 QPDNFTFPSVIKACGGILDVRLGEVIHGMVIKMGLVLDVFVGNALVGMYGKCGAVDEAMK 202

Query: 188 LFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKG----------------ICDN-- 229
           +F  MP  N+VSW +MI  F+ NGF ++S  L +EM G                +C    
Sbjct: 203 VFDFMPETNLVSWNSMICAFSENGFSRDSFDLLMEMLGEEGLLPDVVTVVTILPVCAGEG 262

Query: 230 ---------------GNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMID 274
                          G +  V   N+M+  Y + G L EAQ  F     ++ +SW +MI 
Sbjct: 263 EVDIGMGIHGLAVKLGLSEEVMVNNAMVYMYSKCGYLNEAQMSFVKNNNKNVVSWNTMIS 322

Query: 275 GYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNAT 334
            +   G V+ A+ L   M               +Q E          EM+A+ V  LN  
Sbjct: 323 AFSLEGDVNEAFNLLQEMQ--------------IQGE----------EMKANEVTILNVL 358

Query: 335 FSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMV 394
            + L      +     G          E      L N  I  YAKCG +++A  +F  + 
Sbjct: 359 PACLDKLQLRSLKELHGYSFRHCFQHVE------LSNAFILAYAKCGALNSAEKVFHGIG 412

Query: 395 SRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWE 454
            + + SWN+++ G + +G   + L +   M  SG  P+  T   +L AC+H   +  G E
Sbjct: 413 DKTVSSWNALIGGHAQNGDPRKALHLLFQMTYSGQQPDWFTISSLLLACAHLKSLQYGKE 472

Query: 455 L 455
           +
Sbjct: 473 I 473



 Score =  112 bits (281), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 62/190 (32%), Positives = 100/190 (52%), Gaps = 2/190 (1%)

Query: 265 DEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMR 324
           D +  T +I  Y   G   ++  +F NM  ++ + W A++SG  +N L+ +   +FM++ 
Sbjct: 78  DYVLNTRLIKMYAMCGSPLDSRLVFDNMETKNLIQWNALVSGYTRNGLYGDVVKVFMDLV 137

Query: 325 AH-GVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVI 383
           +     P N TF  +  A G   ++ LG  IH +++K     D+ + N L+ MY KCG +
Sbjct: 138 SDTDFQPDNFTFPSVIKACGGILDVRLGEVIHGMVIKMGLVLDVFVGNALVGMYGKCGAV 197

Query: 384 DNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESML-ESGTHPNSVTFLGILSA 442
           D A  +F  M   +LVSWNSM+  FS +G + ++  +   ML E G  P+ VT + IL  
Sbjct: 198 DEAMKVFDFMPETNLVSWNSMICAFSENGFSRDSFDLLMEMLGEEGLLPDVVTVVTILPV 257

Query: 443 CSHAGLVSRG 452
           C+  G V  G
Sbjct: 258 CAGEGEVDIG 267



 Score = 76.6 bits (187), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 53/183 (28%), Positives = 99/183 (54%), Gaps = 10/183 (5%)

Query: 337 VLFGAAGATANIDLGRQIH-CVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVS 395
           +L  A G   +I+ GR++H  V   T   +D +L   LI MYA CG   ++  +F NM +
Sbjct: 48  LLLQACGNQKDIETGRRLHKFVSDSTHYRNDYVLNTRLIKMYAMCGSPLDSRLVFDNMET 107

Query: 396 RDLVSWNSMVMGFSHHGLANETLKVFESML-ESGTHPNSVTFLGILSACSHAGLVSRGWE 454
           ++L+ WN++V G++ +GL  + +KVF  ++ ++   P++ TF  ++ AC     V  G E
Sbjct: 108 KNLIQWNALVSGYTRNGLYGDVVKVFMDLVSDTDFQPDNFTFPSVIKACGGILDVRLG-E 166

Query: 455 LFNAMFDVYKIQPGPEHYV--SMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACG 512
           + + M  V K+    + +V  +++ + G+ G + EA +    +P E +   W +++  C 
Sbjct: 167 VIHGM--VIKMGLVLDVFVGNALVGMYGKCGAVDEAMKVFDFMP-ETNLVSWNSMI--CA 221

Query: 513 FCE 515
           F E
Sbjct: 222 FSE 224


>gi|413937268|gb|AFW71819.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 830

 Score =  285 bits (730), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 191/628 (30%), Positives = 308/628 (49%), Gaps = 59/628 (9%)

Query: 15  TSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVV 74
           TS +  Y     + + + +F+ M +RNVV++ ++L+G++Q G L +   LF  M    V 
Sbjct: 95  TSLVDMYMNWHSVLDGRKVFEGMLKRNVVTWTSLLTGYIQAGVLLDVMSLFFRMRAEGV- 153

Query: 75  SW------------------------------------TAMICG-----LADAGRVCEAR 93
            W                                    T  +C       A  G V EAR
Sbjct: 154 -WPNPFTFSSVLSMVASQGMVDLGQHVHAQSIKFGCCSTVFVCNSLMNMYAKCGLVEEAR 212

Query: 94  KLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCM--- 150
            +F  M  R++VSWN+++ GL+ NG   EA ++F+       +   +  +  +  C    
Sbjct: 213 VVFCRMETRDMVSWNTLMAGLVLNGRDLEALQLFHDSRSSITMLTESTYSTVINLCANLK 272

Query: 151 -MGEAIVLFEEMEERNVVTW----TSMISGYCRAGEVEEGYCLFRRMP-RKNVVSWTAMI 204
            +G A  L   + +    ++    T+++  Y +AG++++   +F  M   +NVVSWTAMI
Sbjct: 273 HLGLARQLHSSVLKHGFHSYGNVMTALMDAYNKAGQLDKALDVFLLMSGSQNVVSWTAMI 332

Query: 205 GGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMIN-GYIRFGRLEEAQNLFDTVPV 263
            G   NG    +  LF  M+   ++G   N  + ++++      F     AQ +      
Sbjct: 333 DGCIQNGDIPLAAALFSRMR---EDGVAPNDLTYSTILTVSEASFPPQIHAQVIKTNYEC 389

Query: 264 RDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEM 323
              +  T+++  Y  +     A  +F  +  +D V+W+AM++   Q      AT  F++M
Sbjct: 390 TPTVG-TALMVSYSKLCSTEEALSIFKMIDQKDVVSWSAMLTCYAQAGDCNGATNAFIKM 448

Query: 324 RAHGVPPLNATFSVLFGA-AGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGV 382
             HG+ P   T S    A A   A +DLGRQ H + +K      L + + L+SMYA+ G 
Sbjct: 449 TMHGLKPNEFTISSAIDACASPAAGVDLGRQFHAISIKHRCHDALCVSSALVSMYARKGS 508

Query: 383 IDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSA 442
           I+NA  +F     RDL+SWNSM+ G++ HG + + L VF  M   G   + +TFL ++  
Sbjct: 509 IENAQCVFERQTDRDLLSWNSMLSGYAQHGYSQKALDVFRQMEVEGIDMDGLTFLSVIMG 568

Query: 443 CSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHR 502
           C+HAGLV  G + F+ M   Y I P  +HY  M++L  RAGK+ E    +  +PF     
Sbjct: 569 CAHAGLVEEGQQYFDLMVRDYGITPTMDHYACMVDLYSRAGKLDETMSLIEGMPFPAGPT 628

Query: 503 IWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDM 562
           IW ALLGAC     N E+ + AA++LL L+PL++  +V+L NIY+A+G+  E+ ++R  M
Sbjct: 629 IWRALLGACRV-HKNVELGKLAAEKLLSLEPLDSATYVLLSNIYSAAGKWKEKDEVRKLM 687

Query: 563 GLKGVRKVPGCSWLMRNGGIQMFLSGDK 590
             K VRK  GCSW+     +  F++ DK
Sbjct: 688 DTKKVRKEAGCSWIQIKNKVHFFIASDK 715



 Score = 58.5 bits (140), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 41/172 (23%), Positives = 78/172 (45%), Gaps = 11/172 (6%)

Query: 343 GATANIDLGRQIHCVLMKT-ESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSW 401
           G+  +  LG+Q+H + ++      D+ +   L+ MY     + +   +F  M+ R++V+W
Sbjct: 66  GSVPDRVLGKQLHALCVRCGHDHGDIRVGTSLVDMYMNWHSVLDGRKVFEGMLKRNVVTW 125

Query: 402 NSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFD 461
            S++ G+   G+  + + +F  M   G  PN  TF  +LS  +  G+V  G  +      
Sbjct: 126 TSLLTGYIQAGVLLDVMSLFFRMRAEGVWPNPFTFSSVLSMVASQGMVDLGQHVH----- 180

Query: 462 VYKIQPGPEHYV----SMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLG 509
              I+ G    V    S++N+  + G ++EA     R+    D   W  L+ 
Sbjct: 181 AQSIKFGCCSTVFVCNSLMNMYAKCGLVEEARVVFCRMETR-DMVSWNTLMA 231


>gi|345505216|gb|AEN99832.1| chlororespiratory reduction 4 [Capsella bursa-pastoris]
          Length = 617

 Score =  285 bits (730), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 156/454 (34%), Positives = 252/454 (55%), Gaps = 16/454 (3%)

Query: 139 NAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPR--KN 196
           N +I  Y++C  +G A  +F+ M +R+ V++ SMI GY + G +E    LF  MPR  KN
Sbjct: 164 NCLIGLYLKCGCLGFARQIFDRMPQRDSVSFNSMIDGYVKRGLIESARELFDLMPREVKN 223

Query: 197 VVSWTAMIGGFAW--NGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEA 254
           ++SW ++I G+A   +G    S L F EM          ++ S NSMI+GY++ GR+E+A
Sbjct: 224 LISWNSIISGYAQTSDGVDIASNL-FAEMP-------EKDLISWNSMIDGYVKHGRIEDA 275

Query: 255 QNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFV 314
           ++LFD +P RD ++W +MIDGY  +G V  A  LF  MP RD V++ +M++G VQN+  +
Sbjct: 276 KDLFDAMPRRDVVTWATMIDGYAKLGFVHQAKTLFDQMPHRDVVSYNSMMAGYVQNKYHM 335

Query: 315 EATYLF--MEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENC 372
           EA  +F  ME  +H + P   T  ++  A      +     +H  +++ +      L   
Sbjct: 336 EALEIFSDMEKESH-LSPDETTLVIVLSAIAQLGRLSKAMDMHLYIVEKQFFLGGKLGVA 394

Query: 373 LISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPN 432
           LI MY+KCG I +A  +F  + ++ +  WN+M+ G + HGL      +   +      P+
Sbjct: 395 LIDMYSKCGSIQHAMLVFEGIENKSIDHWNAMIGGLAIHGLGESAFDMLLQIERRSIKPD 454

Query: 433 SVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFV 492
            +TF+G+L+ACSH+GLV  G   F  M   +KI+P  +HY  M+++L R+G I+ A+  +
Sbjct: 455 DITFVGVLNACSHSGLVKEGLLCFELMRRKHKIEPRLQHYGCMVDILSRSGSIELAKNLI 514

Query: 493 LRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRH 552
             +P EP+  IW   L AC       E  E   K L+     N  ++V+L N+YA+ G+ 
Sbjct: 515 QEMPIEPNDVIWRTFLTACNH-HKEFETGELVGKHLILQAGYNPSSYVLLSNMYASFGKW 573

Query: 553 VEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFL 586
            +  ++R  M  + + K+PGCSW+  +G +  F 
Sbjct: 574 KDVRRIRTMMKERKIEKIPGCSWIELDGRVHEFF 607



 Score =  183 bits (465), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 122/444 (27%), Positives = 234/444 (52%), Gaps = 34/444 (7%)

Query: 22  SKRGFIDEAKALFQLMPQRNVVS----YNAMLSGFLQNGRLSEARRLFEEMPERNVVSWT 77
           S+ GF+     +  ++ +  + S     N ++  +L+ G L  AR++F+ MP+R+ VS+ 
Sbjct: 136 SRLGFVKGGLQIHGILRKTGLCSDLFLQNCLIGLYLKCGCLGFARQIFDRMPQRDSVSFN 195

Query: 78  AMICGLADAGRVCEARKLFEEMPE--RNVVSWNSMVVGLIRNGE-LNEARKVFNSMPIKN 134
           +MI G    G +  AR+LF+ MP   +N++SWNS++ G  +  + ++ A  +F  MP K+
Sbjct: 196 SMIDGYVKRGLIESARELFDLMPREVKNLISWNSIISGYAQTSDGVDIASNLFAEMPEKD 255

Query: 135 VISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPR 194
           +ISWN+MI GYV+   + +A  LF+ M  R+VVTW +MI GY + G V +   LF +MP 
Sbjct: 256 LISWNSMIDGYVKHGRIEDAKDLFDAMPRRDVVTWATMIDGYAKLGFVHQAKTLFDQMPH 315

Query: 195 KNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEA 254
           ++VVS+ +M+ G+  N +H E+L +F +M+   ++  + +  +   +++   + GRL +A
Sbjct: 316 RDVVSYNSMMAGYVQNKYHMEALEIFSDMEK--ESHLSPDETTLVIVLSAIAQLGRLSKA 373

Query: 255 QNLFDTVPVRDEI----SWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQN 310
            ++   +  +          ++ID Y   G + +A  +F  + ++    W AMI GL  +
Sbjct: 374 MDMHLYIVEKQFFLGGKLGVALIDMYSKCGSIQHAMLVFEGIENKSIDHWNAMIGGLAIH 433

Query: 311 ELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCV-LMKTESESDLIL 369
            L   A  + +++    + P + TF  +  A   +  +  G  + C  LM+ + + +  L
Sbjct: 434 GLGESAFDMLLQIERRSIKPDDITFVGVLNACSHSGLVKEG--LLCFELMRRKHKIEPRL 491

Query: 370 EN--CLISMYAKCGVIDNAYNIFSNM-VSRDLVSWNSMVMGFSHHGLANETLKVFES--- 423
           ++  C++ + ++ G I+ A N+   M +  + V W + +   +HH       K FE+   
Sbjct: 492 QHYGCMVDILSRSGSIELAKNLIQEMPIEPNDVIWRTFLTACNHH-------KEFETGEL 544

Query: 424 -----MLESGTHPNSVTFLGILSA 442
                +L++G +P+S   L  + A
Sbjct: 545 VGKHLILQAGYNPSSYVLLSNMYA 568



 Score =  148 bits (374), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 94/344 (27%), Positives = 169/344 (49%), Gaps = 77/344 (22%)

Query: 7   PKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQ--RNVVSYNAMLSGFLQNGR-LSEARR 63
           P+   V   S I  Y KRG I+ A+ LF LMP+  +N++S+N+++SG+ Q    +  A  
Sbjct: 187 PQRDSVSFNSMIDGYVKRGLIESARELFDLMPREVKNLISWNSIISGYAQTSDGVDIASN 246

Query: 64  LFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEA 123
           LF EMPE++++SW +MI G    GR+ +A+ LF+ MP R+VV+W +M+ G  + G +++A
Sbjct: 247 LFAEMPEKDLISWNSMIDGYVKHGRIEDAKDLFDAMPRRDVVTWATMIDGYAKLGFVHQA 306

Query: 124 RKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVT--------------- 168
           + +F+ MP ++V+S+N+M+AGYV+     EA+ +F +ME+ + ++               
Sbjct: 307 KTLFDQMPHRDVVSYNSMMAGYVQNKYHMEALEIFSDMEKESHLSPDETTLVIVLSAIAQ 366

Query: 169 -------------------------WTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAM 203
                                      ++I  Y + G ++    +F  +  K++  W AM
Sbjct: 367 LGRLSKAMDMHLYIVEKQFFLGGKLGVALIDMYSKCGSIQHAMLVFEGIENKSIDHWNAM 426

Query: 204 IGGFAWNGFHKES--LLLFIEMKGICDNG-------NNCN-------------------- 234
           IGG A +G  + +  +LL IE + I  +        N C+                    
Sbjct: 427 IGGLAIHGLGESAFDMLLQIERRSIKPDDITFVGVLNACSHSGLVKEGLLCFELMRRKHK 486

Query: 235 ----VQSCNSMINGYIRFGRLEEAQNLFDTVPVR-DEISWTSMI 273
               +Q    M++   R G +E A+NL   +P+  +++ W + +
Sbjct: 487 IEPRLQHYGCMVDILSRSGSIELAKNLIQEMPIEPNDVIWRTFL 530



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 71/243 (29%), Positives = 113/243 (46%), Gaps = 22/243 (9%)

Query: 296 DAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIH 355
           D   W A+I      +   +A  LF  M  +GV     + S++  A      +  G QIH
Sbjct: 89  DPFLWNAVIKSHSHGKDPKQALLLFCLMLENGVSVDKFSMSLVLKACSRLGFVKGGLQIH 148

Query: 356 CVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLAN 415
            +L KT   SDL L+NCLI +Y KCG +  A  IF  M  RD VS+NSM+ G+   GL  
Sbjct: 149 GILRKTGLCSDLFLQNCLIGLYLKCGCLGFARQIFDRMPQRDSVSFNSMIDGYVKRGLIE 208

Query: 416 ETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYV-- 473
              ++F+ M       N +++  I+S  +     S G ++ + +F        PE  +  
Sbjct: 209 SARELFDLMPREVK--NLISWNSIISGYAQT---SDGVDIASNLF-----AEMPEKDLIS 258

Query: 474 --SMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIA-EHAAKRLLE 530
             SMI+   + G+I++A++    +P   D   W  ++      +G A++   H AK L +
Sbjct: 259 WNSMIDGYVKHGRIEDAKDLFDAMP-RRDVVTWATMI------DGYAKLGFVHQAKTLFD 311

Query: 531 LDP 533
             P
Sbjct: 312 QMP 314


>gi|356519174|ref|XP_003528249.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Glycine max]
          Length = 975

 Score =  285 bits (729), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 190/628 (30%), Positives = 301/628 (47%), Gaps = 61/628 (9%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEA----RRLFEEMPERNV 73
           I  Y K GF++ A  +F+ M  RN+VS+N+++    +NG   E     +RL     E  V
Sbjct: 237 IAMYGKCGFVESAVKVFETMRNRNLVSWNSVMYACSENGGFGECCGVFKRLLISEEEGLV 296

Query: 74  VSWTAMICGLADAGRVCEARK-------LFEEMPERNVVSWNSMVVGLIRNGELNEARKV 126
                M+  +     V E R         F+      V   NS+V    + G L EAR +
Sbjct: 297 PDVATMVTVIPACAAVGEVRMGMVVHGLAFKLGITEEVTVNNSLVDMYSKCGYLGEARAL 356

Query: 127 FNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEE----------------------- 163
           F+    KNV+SWN +I GY +         L +EM+                        
Sbjct: 357 FDMNGGKNVVSWNTIIWGYSKEGDFRGVFELLQEMQREEKVRVNEVTVLNVLPACSGEHQ 416

Query: 164 -----------------RNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGG 206
                            ++ +   + ++ Y +   ++    +F  M  K V SW A+IG 
Sbjct: 417 LLSLKEIHGYAFRHGFLKDELVANAFVAAYAKCSSLDCAERVFCGMEGKTVSSWNALIGA 476

Query: 207 FAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMING-----YIRFGRLEEAQNLFDTV 261
            A NGF  +SL LF+ M    D+G + +  +  S++       ++R G+      L + +
Sbjct: 477 HAQNGFPGKSLDLFLVMM---DSGMDPDRFTIGSLLLACARLKFLRCGKEIHGFMLRNGL 533

Query: 262 PVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFM 321
            + DE    S++  Y+    +     +F  M ++  V W  MI+G  QNEL  EA   F 
Sbjct: 534 EL-DEFIGISLMSLYIQCSSMLLGKLIFDKMENKSLVCWNVMITGFSQNELPCEALDTFR 592

Query: 322 EMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCG 381
           +M + G+ P     + + GA    + + LG+++H   +K     D  +   LI MYAKCG
Sbjct: 593 QMLSGGIKPQEIAVTGVLGACSQVSALRLGKEVHSFALKAHLSEDAFVTCALIDMYAKCG 652

Query: 382 VIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILS 441
            ++ + NIF  +  +D   WN ++ G+  HG   + +++FE M   G  P+S TFLG+L 
Sbjct: 653 CMEQSQNIFDRVNEKDEAVWNVIIAGYGIHGHGLKAIELFELMQNKGGRPDSFTFLGVLI 712

Query: 442 ACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDH 501
           AC+HAGLV+ G +    M ++Y ++P  EHY  ++++LGRAG++ EA + V  +P EPD 
Sbjct: 713 ACNHAGLVTEGLKYLGQMQNLYGVKPKLEHYACVVDMLGRAGQLTEALKLVNEMPDEPDS 772

Query: 502 RIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMD 561
            IW +LL +C    G+ EI E  +K+LLEL+P  A  +V+L N+YA  G+  E  K+R  
Sbjct: 773 GIWSSLLSSCRN-YGDLEIGEEVSKKLLELEPNKAENYVLLSNLYAGLGKWDEVRKVRQR 831

Query: 562 MGLKGVRKVPGCSWLMRNGGIQMFLSGD 589
           M   G+ K  GCSW+   G +  FL  D
Sbjct: 832 MKENGLHKDAGCSWIEIGGMVYRFLVSD 859



 Score =  152 bits (383), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 139/558 (24%), Positives = 227/558 (40%), Gaps = 59/558 (10%)

Query: 11  VVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEM-- 68
           VV  T  I  YS  G   +++ +F    ++++  YNA+LSG+ +N    +A  LF E+  
Sbjct: 128 VVLSTRIIAMYSACGSPSDSRGVFDAAKEKDLFLYNALLSGYSRNALFRDAISLFLELLS 187

Query: 69  -----PERNVVSWTAMIC--------------------GLADA-------------GRVC 90
                P+   +   A  C                    G +DA             G V 
Sbjct: 188 ATDLAPDNFTLPCVAKACAGVADVELGEAVHALALKAGGFSDAFVGNALIAMYGKCGFVE 247

Query: 91  EARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKN----VISWNAMIAGYV 146
            A K+FE M  RN+VSWNS++     NG   E   VF  + I      V     M+    
Sbjct: 248 SAVKVFETMRNRNLVSWNSVMYACSENGGFGECCGVFKRLLISEEEGLVPDVATMVTVIP 307

Query: 147 ECCMMGEAI-------VLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVS 199
            C  +GE         + F+      V    S++  Y + G + E   LF     KNVVS
Sbjct: 308 ACAAVGEVRMGMVVHGLAFKLGITEEVTVNNSLVDMYSKCGYLGEARALFDMNGGKNVVS 367

Query: 200 WTAMIGGFAWNGFHKESLLLFIEMKGICD-NGNNCNVQSCNSMINGYIRFGRLEEAQNL- 257
           W  +I G++  G  +    L  EM+       N   V +     +G  +   L+E     
Sbjct: 368 WNTIIWGYSKEGDFRGVFELLQEMQREEKVRVNEVTVLNVLPACSGEHQLLSLKEIHGYA 427

Query: 258 FDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEAT 317
           F    ++DE+   + +  Y     +  A  +F  M  +   +W A+I    QN    ++ 
Sbjct: 428 FRHGFLKDELVANAFVAAYAKCSSLDCAERVFCGMEGKTVSSWNALIGAHAQNGFPGKSL 487

Query: 318 YLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMY 377
            LF+ M   G+ P   T   L  A      +  G++IH  +++   E D  +   L+S+Y
Sbjct: 488 DLFLVMMDSGMDPDRFTIGSLLLACARLKFLRCGKEIHGFMLRNGLELDEFIGISLMSLY 547

Query: 378 AKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFL 437
            +C  +     IF  M ++ LV WN M+ GFS + L  E L  F  ML  G  P  +   
Sbjct: 548 IQCSSMLLGKLIFDKMENKSLVCWNVMITGFSQNELPCEALDTFRQMLSGGIKPQEIAVT 607

Query: 438 GILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVS--MINLLGRAGKIKEAEEFVLRL 495
           G+L ACS    +  G E+ +      K     + +V+  +I++  + G +++++    R+
Sbjct: 608 GVLGACSQVSALRLGKEVHSFAL---KAHLSEDAFVTCALIDMYAKCGCMEQSQNIFDRV 664

Query: 496 PFEPDHRIWGALLGACGF 513
             E D  +W  ++   G 
Sbjct: 665 N-EKDEAVWNVIIAGYGI 681



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 71/230 (30%), Positives = 120/230 (52%), Gaps = 9/230 (3%)

Query: 265 DEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEM- 323
           D +  T +I  Y + G  S++  +F    ++D   + A++SG  +N LF +A  LF+E+ 
Sbjct: 127 DVVLSTRIIAMYSACGSPSDSRGVFDAAKEKDLFLYNALLSGYSRNALFRDAISLFLELL 186

Query: 324 RAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVI 383
            A  + P N T   +  A    A+++LG  +H + +K    SD  + N LI+MY KCG +
Sbjct: 187 SATDLAPDNFTLPCVAKACAGVADVELGEAVHALALKAGGFSDAFVGNALIAMYGKCGFV 246

Query: 384 DNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESML---ESGTHPNSVTFLGIL 440
           ++A  +F  M +R+LVSWNS++   S +G   E   VF+ +L   E G  P+  T + ++
Sbjct: 247 ESAVKVFETMRNRNLVSWNSVMYACSENGGFGECCGVFKRLLISEEEGLVPDVATMVTVI 306

Query: 441 SACSHAGLVSRGWELFNAMFDVYKIQPGPEHYV--SMINLLGRAGKIKEA 488
            AC+  G V  G  +    F   K+    E  V  S++++  + G + EA
Sbjct: 307 PACAAVGEVRMGMVVHGLAF---KLGITEEVTVNNSLVDMYSKCGYLGEA 353



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 70/289 (24%), Positives = 131/289 (45%), Gaps = 12/289 (4%)

Query: 165 NVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMK 224
           +VV  T +I+ Y   G   +   +F     K++  + A++ G++ N   ++++ LF+E+ 
Sbjct: 127 DVVLSTRIIAMYSACGSPSDSRGVFDAAKEKDLFLYNALLSGYSRNALFRDAISLFLELL 186

Query: 225 GICDNGNN-----CNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSV 279
              D   +     C  ++C  + +  +  G    A  L       D     ++I  Y   
Sbjct: 187 SATDLAPDNFTLPCVAKACAGVAD--VELGEAVHALAL-KAGGFSDAFVGNALIAMYGKC 243

Query: 280 GQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEM---RAHGVPPLNATFS 336
           G V +A  +F  M +R+ V+W +++    +N  F E   +F  +      G+ P  AT  
Sbjct: 244 GFVESAVKVFETMRNRNLVSWNSVMYACSENGGFGECCGVFKRLLISEEEGLVPDVATMV 303

Query: 337 VLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSR 396
            +  A  A   + +G  +H +  K     ++ + N L+ MY+KCG +  A  +F     +
Sbjct: 304 TVIPACAAVGEVRMGMVVHGLAFKLGITEEVTVNNSLVDMYSKCGYLGEARALFDMNGGK 363

Query: 397 DLVSWNSMVMGFSHHGLANETLKVFESML-ESGTHPNSVTFLGILSACS 444
           ++VSWN+++ G+S  G      ++ + M  E     N VT L +L ACS
Sbjct: 364 NVVSWNTIIWGYSKEGDFRGVFELLQEMQREEKVRVNEVTVLNVLPACS 412



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 30/118 (25%), Positives = 62/118 (52%), Gaps = 2/118 (1%)

Query: 337 VLFGAAGATANIDLGRQIHCVLMKTES-ESDLILENCLISMYAKCGVIDNAYNIFSNMVS 395
           +L  A G   NI +GR++H ++  +    +D++L   +I+MY+ CG   ++  +F     
Sbjct: 97  ILLRACGHHKNIHVGRKVHALVSASHKLRNDVVLSTRIIAMYSACGSPSDSRGVFDAAKE 156

Query: 396 RDLVSWNSMVMGFSHHGLANETLKVFESMLE-SGTHPNSVTFLGILSACSHAGLVSRG 452
           +DL  +N+++ G+S + L  + + +F  +L  +   P++ T   +  AC+    V  G
Sbjct: 157 KDLFLYNALLSGYSRNALFRDAISLFLELLSATDLAPDNFTLPCVAKACAGVADVELG 214


>gi|224082698|ref|XP_002306801.1| predicted protein [Populus trichocarpa]
 gi|222856250|gb|EEE93797.1| predicted protein [Populus trichocarpa]
          Length = 787

 Score =  285 bits (729), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 190/632 (30%), Positives = 321/632 (50%), Gaps = 53/632 (8%)

Query: 9   SLVVHLTSSITKYSKRGFIDEAKALFQLMPQRN-VVSYNAMLSGFLQNGRLSEARRLFEE 67
           S+V    S ++ Y+K   I  A+ LF  M +RN VVS+N+++S +  NG+  EA  LF E
Sbjct: 43  SIVFVANSLVSMYAKCNDILGARKLFDRMNERNDVVSWNSIISAYSLNGQCMEALGLFRE 102

Query: 68  MPERNVVSWTAMICGLADAGRVCEARKLFEEMPER--------NVVSWNSMVVGLIRNGE 119
           M +  V + T  +     A      +KL  E+           +V   N++V   +R G+
Sbjct: 103 MQKAGVGANTYTLVAALQACEDSSFKKLGMEIHAAILKSNQVLDVYVANALVAMHVRFGK 162

Query: 120 LNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNV----VTWTSMIS- 174
           ++ A ++F+ +  K+ I+WN+MIAG+ +  +  EA+  F  +++ N+    V+  S+++ 
Sbjct: 163 MSYAARIFDELDEKDNITWNSMIAGFTQNGLYNEALQFFCGLQDANLKPDEVSLISILAA 222

Query: 175 ----GYCRAGEVEEGYCL------------------------------FRRMPRKNVVSW 200
               GY   G+    Y +                              F +M  K+++SW
Sbjct: 223 SGRLGYLLNGKEIHAYAMKNWLDSNLRIGNTLIDMYSKCCCVAYAGLVFDKMINKDLISW 282

Query: 201 TAMIGGFAWNGFHKESLLLF--IEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLF 258
           T +I  +A N  H E+L L   ++ KG+  + +   + S     +G       +E     
Sbjct: 283 TTVIAAYAQNNCHTEALKLLRKVQTKGM--DVDTMMIGSTLLACSGLRCLSHAKEVHGYT 340

Query: 259 DTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATY 318
               + D +    +ID Y   G ++ A  +F ++  +D V+WT+MIS  V N L  EA  
Sbjct: 341 LKRGLSDLMMQNMIIDVYADCGNINYATRMFESIKCKDVVSWTSMISCYVHNGLANEALG 400

Query: 319 LFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYA 378
           +F  M+   V P + T   +  AA + + ++ G++IH  + +     +    N L+ MYA
Sbjct: 401 VFYLMKETSVEPDSITLVSILSAAASLSALNKGKEIHGFIFRKGFMLEGSTVNSLVDMYA 460

Query: 379 KCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLG 438
            CG ++NAY +F    S+ LV W +M+  +  HG     +++F  M +    P+ +TFL 
Sbjct: 461 CCGSLENAYKVFICTRSKSLVLWTTMINAYGMHGRGKAAVELFSIMEDQKLIPDHITFLA 520

Query: 439 ILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFE 498
           +L ACSH+GL++ G  L   M   Y+++P PEHY  +++LLGRA  ++EA  FV  +  E
Sbjct: 521 LLYACSHSGLINEGKRLLETMKCKYQLEPWPEHYACLVDLLGRANHLEEAYHFVKSMQIE 580

Query: 499 PDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKL 558
           P   +W A LGAC     N ++ E AA++LL+LDP +  ++V++ N++AASGR  +  ++
Sbjct: 581 PTAEVWCAFLGACRI-HSNKKLGEIAAQKLLDLDPDSPGSYVLISNVFAASGRWKDVEEV 639

Query: 559 RMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDK 590
           RM M   G++K PGCSW+     +  FL  DK
Sbjct: 640 RMRMKGGGLKKNPGCSWIEVGNKVHTFLVRDK 671



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 74/237 (31%), Positives = 112/237 (47%), Gaps = 20/237 (8%)

Query: 323 MRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGV 382
           MR  GVP  + TF  +  A G   +I  G +IH +++K   +S + + N L+SMYAKC  
Sbjct: 1   MRVLGVPFDSFTFPCVLKACGVVEDIHRGAEIHGLIIKCGYDSIVFVANSLVSMYAKCND 60

Query: 383 IDNAYNIFSNMVSR-DLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILS 441
           I  A  +F  M  R D+VSWNS++  +S +G   E L +F  M ++G   N+ T +  L 
Sbjct: 61  ILGARKLFDRMNERNDVVSWNSIISAYSLNGQCMEALGLFREMQKAGVGANTYTLVAALQ 120

Query: 442 ACSHAGLVSRGWELF------NAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRL 495
           AC  +     G E+       N + DVY          +++ +  R GK+  A      L
Sbjct: 121 ACEDSSFKKLGMEIHAAILKSNQVLDVYVAN-------ALVAMHVRFGKMSYAARIFDEL 173

Query: 496 PFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLN-APAHVVLCNIYAASGR 551
             E D+  W +++   GF +    +   A +    L   N  P  V L +I AASGR
Sbjct: 174 D-EKDNITWNSMIA--GFTQNG--LYNEALQFFCGLQDANLKPDEVSLISILAASGR 225


>gi|356495396|ref|XP_003516564.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Glycine max]
          Length = 516

 Score =  285 bits (728), Expect = 6e-74,   Method: Compositional matrix adjust.
 Identities = 159/475 (33%), Positives = 254/475 (53%), Gaps = 14/475 (2%)

Query: 132 IKNVISWNAMIAGY--VECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLF 189
           I+N ++ + ++  Y  +E   +    V+F+ +   N V W +M+  Y  + + E    L+
Sbjct: 39  IRNQLTVSTLLVSYARIELVNLAYTRVVFDSISSPNTVIWNTMLRAYSNSNDPEAALLLY 98

Query: 190 RRMPRKNVV--SWTAMIGGFAWNGFHKESLLLFIEMKGI----CDNGNNCNVQSCNSMIN 243
            +M   +V   S+T     F +      +L  F E + I       G    V + NS++ 
Sbjct: 99  HQMLHNSVPHNSYT-----FPFLLKACSALSAFEETQQIHAHIIKRGFGLEVYATNSLLR 153

Query: 244 GYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAM 303
            Y   G ++ A  LF+ +P RD +SW  MIDGY+  G +  AY +F  MP+++ ++WT M
Sbjct: 154 VYAISGNIQSAHVLFNQLPTRDIVSWNIMIDGYIKFGNLDMAYKIFQAMPEKNVISWTTM 213

Query: 304 ISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTES 363
           I G V+  +  EA  L  +M   G+ P + T S    A      ++ G+ IH  + K E 
Sbjct: 214 IVGFVRIGMHKEALSLLQQMLVAGIKPDSITLSCSLSACAGLGALEQGKWIHTYIEKNEI 273

Query: 364 ESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFES 423
           + D +L   L  MY KCG ++ A  +FS +  + + +W +++ G + HG   E L  F  
Sbjct: 274 KIDPVLGCVLTDMYVKCGEMEKALLVFSKLEKKCVCAWTAIIGGLAIHGKGREALDWFTQ 333

Query: 424 MLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAG 483
           M ++G +PNS+TF  IL+ACSHAGL   G  LF +M  VY I+P  EHY  M++L+GRAG
Sbjct: 334 MQKAGINPNSITFTAILTACSHAGLTEEGKSLFESMSSVYNIKPSMEHYGCMVDLMGRAG 393

Query: 484 KIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLC 543
            +KEA EF+  +P +P+  IWGALL AC     + E+ +   K L+ELDP ++  ++ L 
Sbjct: 394 LLKEAREFIESMPVKPNAAIWGALLNACQL-HKHFELGKEIGKILIELDPDHSGRYIHLA 452

Query: 544 NIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
           +IYAA+G   +  ++R  +  +G+   PGCS +  NG +  F +GD     + EI
Sbjct: 453 SIYAAAGEWNQVVRVRSQIKHRGLLNHPGCSSITLNGVVHEFFAGDGSHPHIQEI 507



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 77/279 (27%), Positives = 138/279 (49%), Gaps = 17/279 (6%)

Query: 42  VVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPE 101
           V + N++L  +  +G +  A  LF ++P R++VSW  MI G    G +  A K+F+ MPE
Sbjct: 145 VYATNSLLRVYAISGNIQSAHVLFNQLPTRDIVSWNIMIDGYIKFGNLDMAYKIFQAMPE 204

Query: 102 RNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCM------MGEAI 155
           +NV+SW +M+VG +R G   EA  +   M +  +   +  ++  +  C        G+ I
Sbjct: 205 KNVISWTTMIVGFVRIGMHKEALSLLQQMLVAGIKPDSITLSCSLSACAGLGALEQGKWI 264

Query: 156 VLFEEMEERNV--VTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFH 213
             + E  E  +  V    +   Y + GE+E+   +F ++ +K V +WTA+IGG A +G  
Sbjct: 265 HTYIEKNEIKIDPVLGCVLTDMYVKCGEMEKALLVFSKLEKKCVCAWTAIIGGLAIHGKG 324

Query: 214 KESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEIS----- 268
           +E+L  F +M+     G N N  +  +++      G  EE ++LF+++     I      
Sbjct: 325 REALDWFTQMQ---KAGINPNSITFTAILTACSHAGLTEEGKSLFESMSSVYNIKPSMEH 381

Query: 269 WTSMIDGYLSVGQVSNAYYLFHNMPDR-DAVAWTAMISG 306
           +  M+D     G +  A     +MP + +A  W A+++ 
Sbjct: 382 YGCMVDLMGRAGLLKEAREFIESMPVKPNAAIWGALLNA 420



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 81/284 (28%), Positives = 148/284 (52%), Gaps = 24/284 (8%)

Query: 10  LVVHLTSSITK-YSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEM 68
           L V+ T+S+ + Y+  G I  A  LF  +P R++VS+N M+ G+++ G L  A ++F+ M
Sbjct: 143 LEVYATNSLLRVYAISGNIQSAHVLFNQLPTRDIVSWNIMIDGYIKFGNLDMAYKIFQAM 202

Query: 69  PERNVVSWTAMICGLADAGRVCEARKLFEEM------PERNVVSWN-SMVVGLIRNGELN 121
           PE+NV+SWT MI G    G   EA  L ++M      P+   +S + S   GL   G L 
Sbjct: 203 PEKNVISWTTMIVGFVRIGMHKEALSLLQQMLVAGIKPDSITLSCSLSACAGL---GALE 259

Query: 122 EARKVFNSMPIKNVISWNAMIAG-----YVECCMMGEAIVLFEEMEERNVVTWTSMISGY 176
           + + +   +  KN I  + ++       YV+C  M +A+++F ++E++ V  WT++I G 
Sbjct: 260 QGKWIHTYIE-KNEIKIDPVLGCVLTDMYVKCGEMEKALLVFSKLEKKCVCAWTAIIGGL 318

Query: 177 CRAGEVEEGYCLFRRMPR----KNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNN 232
              G+  E    F +M +     N +++TA++   +  G  +E   LF  M  + +   +
Sbjct: 319 AIHGKGREALDWFTQMQKAGINPNSITFTAILTACSHAGLTEEGKSLFESMSSVYNIKPS 378

Query: 233 CNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEIS-WTSMIDG 275
                C  M++   R G L+EA+   +++PV+   + W ++++ 
Sbjct: 379 MEHYGC--MVDLMGRAGLLKEAREFIESMPVKPNAAIWGALLNA 420



 Score =  105 bits (263), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 115/492 (23%), Positives = 206/492 (41%), Gaps = 101/492 (20%)

Query: 63  RLFEEMPERNVVSWTAMICGLA--DAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGEL 120
           +L ++   RN ++ + ++   A  +   +   R +F+ +   N V WN+M+     + + 
Sbjct: 32  QLLKKGTIRNQLTVSTLLVSYARIELVNLAYTRVVFDSISSPNTVIWNTMLRAYSNSNDP 91

Query: 121 NEARKVF-----NSMP-----------------------------IK-----NVISWNAM 141
             A  ++     NS+P                             IK      V + N++
Sbjct: 92  EAALLLYHQMLHNSVPHNSYTFPFLLKACSALSAFEETQQIHAHIIKRGFGLEVYATNSL 151

Query: 142 IAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWT 201
           +  Y     +  A VLF ++  R++V+W  MI GY + G ++  Y +F+ MP KNV+SWT
Sbjct: 152 LRVYAISGNIQSAHVLFNQLPTRDIVSWNIMIDGYIKFGNLDMAYKIFQAMPEKNVISWT 211

Query: 202 AMIGGFAWNGFHKESLLLFIEM--KGICDNGN--NCNVQSCNSMINGYIRFGRLEEAQNL 257
            MI GF   G HKE+L L  +M   GI  +    +C++ +C  +       G LE+ + +
Sbjct: 212 TMIVGFVRIGMHKEALSLLQQMLVAGIKPDSITLSCSLSACAGL-------GALEQGKWI 264

Query: 258 FDTVPVR----DEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELF 313
              +       D +    + D Y+  G++  A  +F  +  +   AWTA+I GL  +   
Sbjct: 265 HTYIEKNEIKIDPVLGCVLTDMYVKCGEMEKALLVFSKLEKKCVCAWTAIIGGLAIHGKG 324

Query: 314 VEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCL 373
            EA   F +M+  G+ P + TF+ +  A       + G+ +       ES S +      
Sbjct: 325 REALDWFTQMQKAGINPNSITFTAILTACSHAGLTEEGKSLF------ESMSSV------ 372

Query: 374 ISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNS 433
                        YNI  +M       +  MV      GL  E  +  ESM      PN+
Sbjct: 373 -------------YNIKPSM-----EHYGCMVDLMGRAGLLKEAREFIESM---PVKPNA 411

Query: 434 VTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEH---YVSMINLLGRAGKIKEAEE 490
             +  +L+AC     + + +EL   +  +  I+  P+H   Y+ + ++   AG+  +   
Sbjct: 412 AIWGALLNACQ----LHKHFELGKEIGKIL-IELDPDHSGRYIHLASIYAAAGEWNQ--- 463

Query: 491 FVLRLPFEPDHR 502
            V+R+  +  HR
Sbjct: 464 -VVRVRSQIKHR 474



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 59/202 (29%), Positives = 96/202 (47%), Gaps = 20/202 (9%)

Query: 7   PKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFE 66
           P   +V     I  Y K G +D A  +FQ MP++NV+S+  M+ GF++ G   EA  L +
Sbjct: 172 PTRDIVSWNIMIDGYIKFGNLDMAYKIFQAMPEKNVISWTTMIVGFVRIGMHKEALSLLQ 231

Query: 67  EM------PERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVG------L 114
           +M      P+   +S +   C    A    E  K      E+N +  +  V+G       
Sbjct: 232 QMLVAGIKPDSITLSCSLSACAGLGA---LEQGKWIHTYIEKNEIKIDP-VLGCVLTDMY 287

Query: 115 IRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEER----NVVTWT 170
           ++ GE+ +A  VF+ +  K V +W A+I G        EA+  F +M++     N +T+T
Sbjct: 288 VKCGEMEKALLVFSKLEKKCVCAWTAIIGGLAIHGKGREALDWFTQMQKAGINPNSITFT 347

Query: 171 SMISGYCRAGEVEEGYCLFRRM 192
           ++++    AG  EEG  LF  M
Sbjct: 348 AILTACSHAGLTEEGKSLFESM 369



 Score = 52.4 bits (124), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 37/130 (28%), Positives = 64/130 (49%), Gaps = 17/130 (13%)

Query: 353 QIHCVLMKTESESDLILENCLISMYAKCGVIDNAYN--IFSNMVSRDLVSWNSMVMGFSH 410
           QIH  L+K  +  + +  + L+  YA+  +++ AY   +F ++ S + V WN+M+  +S+
Sbjct: 28  QIHGQLLKKGTIRNQLTVSTLLVSYARIELVNLAYTRVVFDSISSPNTVIWNTMLRAYSN 87

Query: 411 HGLANETLKVFESMLESGTHPNSVTFLGILSACS-----------HAGLVSRGWEL---- 455
                  L ++  ML +    NS TF  +L ACS           HA ++ RG+ L    
Sbjct: 88  SNDPEAALLLYHQMLHNSVPHNSYTFPFLLKACSALSAFEETQQIHAHIIKRGFGLEVYA 147

Query: 456 FNAMFDVYKI 465
            N++  VY I
Sbjct: 148 TNSLLRVYAI 157


>gi|356558692|ref|XP_003547637.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g17630-like [Glycine max]
          Length = 696

 Score =  285 bits (728), Expect = 6e-74,   Method: Compositional matrix adjust.
 Identities = 177/625 (28%), Positives = 315/625 (50%), Gaps = 63/625 (10%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQ---RNVVSYNAMLSGFLQNGRLSEARRLFEEM------ 68
           I  Y++  F+  A+ +F  +P     +++ +N+++   + +G    A  L+ EM      
Sbjct: 70  IAVYARFAFLSHARKVFDAIPLESLHHLLLWNSIIRANVSHGYHQHALELYVEMRKLGFL 129

Query: 69  PERNVVSWTAMICGLADAGRVCEARKLFE-EMPERNVVSWNSMVVGLI-RNGELNEARKV 126
           P+   +      C    +  +C        +M  RN +   + +VG+  + G + +AR++
Sbjct: 130 PDGFTLPLVIRACSSLGSSYLCRIVHCHALQMGFRNHLHVVNELVGMYGKLGRMEDARQL 189

Query: 127 FNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEME----ERNVVTWTSMISGYCRAGEV 182
           F+ M +++++SWN M++GY        A  +F+ ME    + N VTWTS++S + R G  
Sbjct: 190 FDGMFVRSIVSWNTMVSGYALNRDSLGASRVFKRMELEGLQPNSVTWTSLLSSHARCGLY 249

Query: 183 EEGYCLFRRMPRKNV-------------------VSWTAMIGGFAWNGFHKESLLLFIEM 223
           +E   LF+ M  + +                   V W   I G+   G +++   LF++ 
Sbjct: 250 DETLELFKVMRTRGIEIGAEALAVVLSVCADMAEVDWGKEIHGYVVKGGYED--YLFVK- 306

Query: 224 KGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVS 283
                          N++I  Y +   + +A  +F  +  ++ +SW ++I  Y   G   
Sbjct: 307 ---------------NALIGTYGKHQHMGDAHKVFLEIKNKNLVSWNALISSYAESGLCD 351

Query: 284 NAYYLFHNMPDRDA----------VAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNA 333
            AY  F +M   D+          ++W+A+ISG        ++  LF +M+   V     
Sbjct: 352 EAYAAFLHMEKSDSDDHSLVRPNVISWSAVISGFAYKGRGEKSLELFRQMQLAKVMANCV 411

Query: 334 TFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNM 393
           T S +       A ++LGR++H   ++     ++++ N LI+MY KCG     + +F N+
Sbjct: 412 TISSVLSVCAELAALNLGRELHGYAIRNMMSDNILVGNGLINMYMKCGDFKEGHLVFDNI 471

Query: 394 VSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGW 453
             RDL+SWNS++ G+  HGL    L+ F  M+ +   P+++TF+ ILSACSHAGLV+ G 
Sbjct: 472 EGRDLISWNSLIGGYGMHGLGENALRTFNEMIRARMKPDNITFVAILSACSHAGLVAAGR 531

Query: 454 ELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGF 513
            LF+ M   ++I+P  EHY  M++LLGRAG +KEA + V  +P EP+  +WGALL +C  
Sbjct: 532 NLFDQMVTEFRIEPNVEHYACMVDLLGRAGLLKEATDIVRNMPIEPNEYVWGALLNSCRM 591

Query: 514 CEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGC 573
            + + +I E  A ++L L      + ++L NIYAA+GR  +  ++R+    KG++K+PG 
Sbjct: 592 YK-DMDIVEETASQILTLKSKITGSFMLLSNIYAANGRWDDSARVRVSARTKGLKKIPGQ 650

Query: 574 SWLMRNGGIQMFLSGDKIPAQVAEI 598
           SW+     +  F +G+ +   + +I
Sbjct: 651 SWIEVRKKVYTFSAGNLVHFGLEDI 675



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 82/313 (26%), Positives = 139/313 (44%), Gaps = 36/313 (11%)

Query: 241 MINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAW 300
           +I  Y RF  L  A+ +FD +P+                          H++     + W
Sbjct: 69  LIAVYARFAFLSHARKVFDAIPLES-----------------------LHHL-----LLW 100

Query: 301 TAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMK 360
            ++I   V +     A  L++EMR  G  P   T  ++  A  +  +  L R +HC  ++
Sbjct: 101 NSIIRANVSHGYHQHALELYVEMRKLGFLPDGFTLPLVIRACSSLGSSYLCRIVHCHALQ 160

Query: 361 TESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKV 420
               + L + N L+ MY K G +++A  +F  M  R +VSWN+MV G++ +  +    +V
Sbjct: 161 MGFRNHLHVVNELVGMYGKLGRMEDARQLFDGMFVRSIVSWNTMVSGYALNRDSLGASRV 220

Query: 421 FESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLG 480
           F+ M   G  PNSVT+  +LS+ +  GL     ELF  M     I+ G E    ++++  
Sbjct: 221 FKRMELEGLQPNSVTWTSLLSSHARCGLYDETLELFKVM-RTRGIEIGAEALAVVLSVCA 279

Query: 481 RAGKI---KEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAP 537
              ++   KE   +V++  +E    +  AL+G  G  +   +    A K  LE+   N  
Sbjct: 280 DMAEVDWGKEIHGYVVKGGYEDYLFVKNALIGTYGKHQHMGD----AHKVFLEIKNKNLV 335

Query: 538 AHVVLCNIYAASG 550
           +   L + YA SG
Sbjct: 336 SWNALISSYAESG 348



 Score = 47.8 bits (112), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 36/144 (25%), Positives = 67/144 (46%), Gaps = 9/144 (6%)

Query: 351 GRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNM---VSRDLVSWNSMVMG 407
            RQ+H  L+ T +     L   LI++YA+   + +A  +F  +       L+ WNS++  
Sbjct: 47  ARQLHSQLVLTTAHRLPFLAARLIAVYARFAFLSHARKVFDAIPLESLHHLLLWNSIIRA 106

Query: 408 FSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQP 467
              HG     L+++  M + G  P+  T   ++ ACS     S G      +   + +Q 
Sbjct: 107 NVSHGYHQHALELYVEMRKLGFLPDGFTLPLVIRACS-----SLGSSYLCRIVHCHALQM 161

Query: 468 GPEHYVSMIN-LLGRAGKIKEAEE 490
           G  +++ ++N L+G  GK+   E+
Sbjct: 162 GFRNHLHVVNELVGMYGKLGRMED 185


>gi|356502788|ref|XP_003520198.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Glycine max]
          Length = 923

 Score =  285 bits (728), Expect = 6e-74,   Method: Compositional matrix adjust.
 Identities = 182/634 (28%), Positives = 318/634 (50%), Gaps = 54/634 (8%)

Query: 18  ITKYSKRGFIDEAKALFQ--LMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPE----R 71
           I  Y K G +  A+ LF   +M + + VS+N+++S  +  G   EA  LF  M E     
Sbjct: 187 IAMYGKCGDLGGARVLFDGIMMEKEDTVSWNSIISAHVAEGNCLEALSLFRRMQEVGVAS 246

Query: 72  NVVSWTAMICGLADAGRVCEARKLFEEMPERN----VVSWNSMVVGLIRNGELNEARKVF 127
           N  ++ A + G+ D   V     +   + + N    V   N+++    + G + +A +VF
Sbjct: 247 NTYTFVAALQGVEDPSFVKLGMGIHGAVLKSNHFADVYVANALIAMYAKCGRMEDAGRVF 306

Query: 128 NSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEME----ERNVVTWTSMISGYCRAGEVE 183
            SM  ++ +SWN +++G V+  +  +A+  F +M+    + + V+  ++I+   R+G + 
Sbjct: 307 ESMLCRDYVSWNTLLSGLVQNELYSDALNYFRDMQNSGQKPDQVSVLNLIAASGRSGNLL 366

Query: 184 EG-----YCL------------------------------FRRMPRKNVVSWTAMIGGFA 208
           +G     Y +                              F  M  K+++SWT +I G+A
Sbjct: 367 KGKEVHAYAIRNGLDSNMQIGNTLVDMYAKCCCVKYMGHAFECMHEKDLISWTTIIAGYA 426

Query: 209 WNGFHKESLLLF--IEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDE 266
            N FH E++ LF  +++KG+  + +   + S     +G      + E         + D 
Sbjct: 427 QNEFHLEAINLFRKVQVKGM--DVDPMMIGSVLRACSGLKSRNFIREIHGYVFKRDLADI 484

Query: 267 ISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAH 326
           +   ++++ Y  VG +  A   F ++  +D V+WT+MI+  V N L VEA  LF  ++  
Sbjct: 485 MLQNAIVNVYGEVGHIDYARRAFESIRSKDIVSWTSMITCCVHNGLPVEALELFYSLKQT 544

Query: 327 GVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNA 386
            + P +        A    +++  G++IH  L++     +  + + L+ MYA CG ++N+
Sbjct: 545 NIQPDSIAIISALSATANLSSLKKGKEIHGFLIRKGFFLEGPIASSLVDMYACCGTVENS 604

Query: 387 YNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHA 446
             +F ++  RDL+ W SM+     HG  N+ + +F+ M +    P+ +TFL +L ACSH+
Sbjct: 605 RKMFHSVKQRDLILWTSMINANGMHGCGNKAIALFKKMTDQNVIPDHITFLALLYACSHS 664

Query: 447 GLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGA 506
           GL+  G   F  M   Y+++P PEHY  M++LL R+  ++EA  FV  +P +P   IW A
Sbjct: 665 GLMVEGKRFFEIMKYGYQLEPWPEHYACMVDLLSRSNSLEEAYHFVRNMPIKPSSEIWCA 724

Query: 507 LLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKG 566
           LLGAC     N E+ E AAK LL+ D  N+  + ++ NI+AA GR  +  ++R+ M   G
Sbjct: 725 LLGACHI-HSNKELGELAAKELLQSDTENSGKYALISNIFAADGRWNDVEEVRLRMKGNG 783

Query: 567 VRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEILL 600
           ++K PGCSW+  +  I  F++ DK   Q  +I L
Sbjct: 784 LKKNPGCSWIEVDNKIHTFMARDKSHPQTDDIYL 817



 Score =  148 bits (373), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 133/509 (26%), Positives = 225/509 (44%), Gaps = 78/509 (15%)

Query: 15  TSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVV 74
           T  +  Y K G + +A  +F  M +R + S+NA++  F+ +G+  EA  L+++M    V+
Sbjct: 83  TKLVLMYGKCGSLRDAVKVFDEMSERTIFSWNALMGAFVSSGKYLEAIELYKDM---RVL 139

Query: 75  SWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKN 134
                 C      + C A      + E  + +    V      GE               
Sbjct: 140 GVAIDACTFPSVLKACGA------LGESRLGAEIHGVAVKCGYGEF-------------- 179

Query: 135 VISWNAMIAGYVECCMMGEAIVLFEE--MEERNVVTWTSMISGYCRAGEVEEGYCLFRRM 192
           V   NA+IA Y +C  +G A VLF+   ME+ + V+W S+IS +   G   E   LFRRM
Sbjct: 180 VFVCNALIAMYGKCGDLGGARVLFDGIMMEKEDTVSWNSIISAHVAEGNCLEALSLFRRM 239

Query: 193 PRKNVVSWTAMIGGFAWNGFHKESLL-LFIEMKGICDNGNN-CNVQSCNSMINGYIRFGR 250
               V S T      A  G    S + L + + G     N+  +V   N++I  Y + GR
Sbjct: 240 QEVGVASNTYTFVA-ALQGVEDPSFVKLGMGIHGAVLKSNHFADVYVANALIAMYAKCGR 298

Query: 251 LEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQN 310
           +E+A  +F+++  RD +SW +                               ++SGLVQN
Sbjct: 299 MEDAGRVFESMLCRDYVSWNT-------------------------------LLSGLVQN 327

Query: 311 ELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILE 370
           EL+ +A   F +M+  G  P   +   L  A+G + N+  G+++H   ++   +S++ + 
Sbjct: 328 ELYSDALNYFRDMQNSGQKPDQVSVLNLIAASGRSGNLLKGKEVHAYAIRNGLDSNMQIG 387

Query: 371 NCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTH 430
           N L+ MYAKC  +    + F  M  +DL+SW +++ G++ +    E + +F  +   G  
Sbjct: 388 NTLVDMYAKCCCVKYMGHAFECMHEKDLISWTTIIAGYAQNEFHLEAINLFRKVQVKGMD 447

Query: 431 PNSVTFLGILSACSHAGLVSRGW--ELFNAMF--DVYKIQPGPEHYVSMINLLGRAGKIK 486
            + +    +L ACS  GL SR +  E+   +F  D+  I        +++N+ G  G I 
Sbjct: 448 VDPMMIGSVLRACS--GLKSRNFIREIHGYVFKRDLADIMLQN----AIVNVYGEVGHID 501

Query: 487 EAEEFVLRLPFE----PDHRIWGALLGAC 511
            A     R  FE     D   W +++  C
Sbjct: 502 YA-----RRAFESIRSKDIVSWTSMITCC 525



 Score = 99.0 bits (245), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 82/287 (28%), Positives = 127/287 (44%), Gaps = 13/287 (4%)

Query: 270 TSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVP 329
           T ++  Y   G + +A  +F  M +R   +W A++   V +  ++EA  L+ +MR  GV 
Sbjct: 83  TKLVLMYGKCGSLRDAVKVFDEMSERTIFSWNALMGAFVSSGKYLEAIELYKDMRVLGVA 142

Query: 330 PLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNI 389
               TF  +  A GA     LG +IH V +K      + + N LI+MY KCG +  A  +
Sbjct: 143 IDACTFPSVLKACGALGESRLGAEIHGVAVKCGYGEFVFVCNALIAMYGKCGDLGGARVL 202

Query: 390 FSN--MVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAG 447
           F    M   D VSWNS++      G   E L +F  M E G   N+ TF+  L       
Sbjct: 203 FDGIMMEKEDTVSWNSIISAHVAEGNCLEALSLFRRMQEVGVASNTYTFVAALQGVEDPS 262

Query: 448 LVSRGWELFNAMFDVYKIQPGPEHYV--SMINLLGRAGKIKEAEEFVLRLPFEPDHRIWG 505
            V  G  +  A   V K     + YV  ++I +  + G++++A   V       D+  W 
Sbjct: 263 FVKLGMGIHGA---VLKSNHFADVYVANALIAMYAKCGRMEDAGR-VFESMLCRDYVSWN 318

Query: 506 ALLGACGFCEGNAEIAEHAAKRLLEL-DPLNAPAHVVLCNIYAASGR 551
            LL   G  +   E+   A     ++ +    P  V + N+ AASGR
Sbjct: 319 TLLS--GLVQN--ELYSDALNYFRDMQNSGQKPDQVSVLNLIAASGR 361



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 51/206 (24%), Positives = 93/206 (45%), Gaps = 13/206 (6%)

Query: 331 LNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIF 390
           L    S+L     A   +  G+Q+H +L+K+   +   L   L+ MY KCG + +A  +F
Sbjct: 45  LEHAHSLLLDLCVAAKALPQGQQLHALLLKSHLSA--FLATKLVLMYGKCGSLRDAVKVF 102

Query: 391 SNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVS 450
             M  R + SWN+++  F   G   E +++++ M   G   ++ TF  +L AC   G   
Sbjct: 103 DEMSERTIFSWNALMGAFVSSGKYLEAIELYKDMRVLGVAIDACTFPSVLKACGALGESR 162

Query: 451 RGWELFNAMFDVYKIQPGPEHYV----SMINLLGRAGKIKEAEEFVLRLPFEPDHRI-WG 505
            G E+         ++ G   +V    ++I + G+ G +  A      +  E +  + W 
Sbjct: 163 LGAEIHGV-----AVKCGYGEFVFVCNALIAMYGKCGDLGGARVLFDGIMMEKEDTVSWN 217

Query: 506 ALLGACGFCEGNAEIAEHAAKRLLEL 531
           +++ A    EGN   A    +R+ E+
Sbjct: 218 SIISA-HVAEGNCLEALSLFRRMQEV 242


>gi|449500331|ref|XP_004161068.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g33680-like [Cucumis sativus]
          Length = 710

 Score =  285 bits (728), Expect = 7e-74,   Method: Compositional matrix adjust.
 Identities = 195/641 (30%), Positives = 321/641 (50%), Gaps = 58/641 (9%)

Query: 12  VHLTSSITK-YSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRL--SEARRLFEEM 68
           V+LT+S+   Y+K G I +AK +F+ +  ++VVS+N +++G+ Q G +  S    LF+ M
Sbjct: 45  VYLTNSLVNLYAKCGSIVKAKLVFESITNKDVVSWNCLINGYSQKGTVGYSFVMELFQRM 104

Query: 69  PERNVVSWTAMICGLADAGRVC-------EARKLFEEMPE-RNVVSWNSMVVGLIRNGEL 120
              N +       G+  A           +A  L  +     +V   +S++    + G +
Sbjct: 105 RAENTLPNGHTFSGVFTAASSSPETFGGLQAHALAIKTSNFYDVFVGSSLINMYCKIGCM 164

Query: 121 NEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEE----RNVVTWTSMISG- 175
            +ARKVF+++P +N +SW  +I+GY    M  EA  LF  M       +   +TS++S  
Sbjct: 165 LDARKVFDTIPERNTVSWATIISGYAMERMAFEAWELFXLMRREEGAHDKFIYTSVLSAL 224

Query: 176 ----------------------------------YCRAGEVEEGYCLFRRMPRKNVVSWT 201
                                             Y + G +++    F     K+ ++W+
Sbjct: 225 TVPDLVHYGKQIHCLALKNGLLSIASVGNALVTMYGKCGCLDDALKTFELSGDKDDITWS 284

Query: 202 AMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFD-- 259
           AMI G+A  G   E+L LF  M     NGN  +  +   +IN     G LEE + +    
Sbjct: 285 AMITGYAQAGDSHEALNLFYNMH---LNGNKPSEFTFVGVINACSDIGALEEGKQIHGYS 341

Query: 260 -TVPVRDEISW-TSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEAT 317
                  +I + T+++D Y   G + +A   F  + + D V WT+MISG  QN     A 
Sbjct: 342 LKAGYECQIYFMTALVDMYAKCGSLVDARKGFDYLKEPDIVLWTSMISGYAQNGENETAL 401

Query: 318 YLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMY 377
            L+  M+   + P   T + +  A  + A ++ G+QIH   +K     ++ + + L +MY
Sbjct: 402 TLYCRMQMERIMPHELTMASVLRACSSLAALEQGKQIHAQTIKYGFSLEVPIGSALSTMY 461

Query: 378 AKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFL 437
           AKCG +++   +F  M SRD+++WN+M+ G S +G   + L++FE +    T P+ VTF+
Sbjct: 462 AKCGSLEDGNLVFRRMPSRDIMTWNAMISGLSQNGEGLKALELFEELRHGTTKPDYVTFV 521

Query: 438 GILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPF 497
            +LSACSH GLV RG   F  M D + I P  EHY  M+++L RAGK+ E +EF+     
Sbjct: 522 NVLSACSHMGLVERGKVYFRMMLDEFGIVPRVEHYACMVDILSRAGKLHETKEFIESATI 581

Query: 498 EPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHK 557
           +    +W  LLGAC     N E+  +A ++L+EL    + A+++L +IY A GR  +  +
Sbjct: 582 DHGMCLWRILLGACRNYR-NYELGAYAGEKLMELGSQESSAYILLSSIYTALGRSDDVER 640

Query: 558 LRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
           +R  M L+GV K PGCSW+     + +F+ GD+I  Q+ +I
Sbjct: 641 VRRLMKLRGVNKEPGCSWIELKSQVHVFVVGDQIHPQIVKI 681



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 97/413 (23%), Positives = 194/413 (46%), Gaps = 46/413 (11%)

Query: 106 SWNSMVVGLIRNGELNEAR----KVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEM 161
           S+  +++   R  +L + +    ++  +    +V   N+++  Y +C  + +A ++FE +
Sbjct: 12  SFVDLLLRCTRQKDLQKGKAIHAQLLRTGSFSSVYLTNSLVNLYAKCGSIVKAKLVFESI 71

Query: 162 EERNVVTWTSMISGYCRAGEVEEGYC--LFRRMPRKNVVSWTAMIGGFAWNGFHKESLLL 219
             ++VV+W  +I+GY + G V   +   LF+RM  +N +       G  ++G       +
Sbjct: 72  TNKDVVSWNCLINGYSQKGTVGYSFVMELFQRMRAENTLP-----NGHTFSG-------V 119

Query: 220 FIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSV 279
           F       +                   FG L+       T    D    +S+I+ Y  +
Sbjct: 120 FTAASSSPET------------------FGGLQAHALAIKTSNFYDVFVGSSLINMYCKI 161

Query: 280 GQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLF 339
           G + +A  +F  +P+R+ V+W  +ISG     +  EA  LF  MR          ++ + 
Sbjct: 162 GCMLDARKVFDTIPERNTVSWATIISGYAMERMAFEAWELFXLMRREEGAHDKFIYTSVL 221

Query: 340 GAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLV 399
            A      +  G+QIHC+ +K    S   + N L++MY KCG +D+A   F     +D +
Sbjct: 222 SALTVPDLVHYGKQIHCLALKNGLLSIASVGNALVTMYGKCGCLDDALKTFELSGDKDDI 281

Query: 400 SWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAM 459
           +W++M+ G++  G ++E L +F +M  +G  P+  TF+G+++ACS  G +  G ++    
Sbjct: 282 TWSAMITGYAQAGDSHEALNLFYNMHLNGNKPSEFTFVGVINACSDIGALEEGKQIHG-- 339

Query: 460 FDVYKIQPGPEHYV----SMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALL 508
              Y ++ G E  +    +++++  + G + +A +    L  EPD  +W +++
Sbjct: 340 ---YSLKAGYECQIYFMTALVDMYAKCGSLVDARKGFDYLK-EPDIVLWTSMI 388



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 54/193 (27%), Positives = 98/193 (50%), Gaps = 14/193 (7%)

Query: 323 MRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGV 382
           M  + +PP + +F  L        ++  G+ IH  L++T S S + L N L+++YAKCG 
Sbjct: 1   MNLYLLPPQHRSFVDLLLRCTRQKDLQKGKAIHAQLLRTGSFSSVYLTNSLVNLYAKCGS 60

Query: 383 IDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANET--LKVFESMLESGTHPNSVTFLGIL 440
           I  A  +F ++ ++D+VSWN ++ G+S  G    +  +++F+ M    T PN  TF G+ 
Sbjct: 61  IVKAKLVFESITNKDVVSWNCLINGYSQKGTVGYSFVMELFQRMRAENTLPNGHTFSGVF 120

Query: 441 SACSHA-----GLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRL 495
           +A S +     GL +    +  + F  Y +  G     S+IN+  + G + +A +    +
Sbjct: 121 TAASSSPETFGGLQAHALAIKTSNF--YDVFVGS----SLINMYCKIGCMLDARKVFDTI 174

Query: 496 PFEPDHRIWGALL 508
           P E +   W  ++
Sbjct: 175 P-ERNTVSWATII 186



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 47/194 (24%), Positives = 94/194 (48%), Gaps = 12/194 (6%)

Query: 11  VVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPE 70
           +  +T+ +  Y+K G + +A+  F  + + ++V + +M+SG+ QNG    A  L+  M  
Sbjct: 350 IYFMTALVDMYAKCGSLVDARKGFDYLKEPDIVLWTSMISGYAQNGENETALTLYCRMQM 409

Query: 71  RNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGL--------IRNGELNE 122
             ++     +  +  A     A +  +++  + +    S+ V +         + G L +
Sbjct: 410 ERIMPHELTMASVLRACSSLAALEQGKQIHAQTIKYGFSLEVPIGSALSTMYAKCGSLED 469

Query: 123 ARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEME----ERNVVTWTSMISGYCR 178
              VF  MP +++++WNAMI+G  +     +A+ LFEE+     + + VT+ +++S    
Sbjct: 470 GNLVFRRMPSRDIMTWNAMISGLSQNGEGLKALELFEELRHGTTKPDYVTFVNVLSACSH 529

Query: 179 AGEVEEGYCLFRRM 192
            G VE G   FR M
Sbjct: 530 MGLVERGKVYFRMM 543



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 49/192 (25%), Positives = 92/192 (47%), Gaps = 17/192 (8%)

Query: 9   SLVVHLTSSI-TKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEE 67
           SL V + S++ T Y+K G +++   +F+ MP R+++++NAM+SG  QNG   +A  LFEE
Sbjct: 448 SLEVPIGSALSTMYAKCGSLEDGNLVFRRMPSRDIMTWNAMISGLSQNGEGLKALELFEE 507

Query: 68  M----PERNVVSWTAMICGLADAGRVCEARKLFEEMPER-----NVVSWNSMVVGLIRNG 118
           +     + + V++  ++   +  G V   +  F  M +       V  +  MV  L R G
Sbjct: 508 LRHGTTKPDYVTFVNVLSACSHMGLVERGKVYFRMMLDEFGIVPRVEHYACMVDILSRAG 567

Query: 119 ELNEARKVFNSMPIKNVIS-WNAMIAG------YVECCMMGEAIVLFEEMEERNVVTWTS 171
           +L+E ++   S  I + +  W  ++        Y      GE ++     E    +  +S
Sbjct: 568 KLHETKEFIESATIDHGMCLWRILLGACRNYRNYELGAYAGEKLMELGSQESSAYILLSS 627

Query: 172 MISGYCRAGEVE 183
           + +   R+ +VE
Sbjct: 628 IYTALGRSDDVE 639


>gi|222613253|gb|EEE51385.1| hypothetical protein OsJ_32436 [Oryza sativa Japonica Group]
          Length = 863

 Score =  285 bits (728), Expect = 7e-74,   Method: Compositional matrix adjust.
 Identities = 185/633 (29%), Positives = 307/633 (48%), Gaps = 57/633 (9%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPE------- 70
           +  Y K   +D+A   F  MP+RN VS+ A ++G +QN +      LF EM         
Sbjct: 191 VDMYGKCRSLDDALCFFYGMPERNWVSWGAAIAGCVQNEQYVRGLELFIEMQRLGLGVSQ 250

Query: 71  --------------------------------RNVVSWTAMICGLADAGRVCEARKLFEE 98
                                            + V  TA++   A A  + +AR+ F  
Sbjct: 251 PSYASAFRSCAAMSCLNTGRQLHAHAIKNKFSSDRVVGTAIVDVYAKANSLTDARRAFFG 310

Query: 99  MPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAM-IAGYVECCMMGEAIVL 157
           +P   V + N+M+VGL+R G   EA  +F  M I++ I ++ + ++G    C   +    
Sbjct: 311 LPNHTVETSNAMMVGLVRAGLGIEAMGLFQFM-IRSSIRFDVVSLSGVFSACAETKGYFQ 369

Query: 158 FEEME--------ERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAW 209
            +++         + ++    +++  Y +   + E Y +F+ M +K+ VSW A+I     
Sbjct: 370 GQQVHCLAIKSGFDVDICVNNAVLDLYGKCKALMEAYLIFQGMKQKDSVSWNAIIAALEQ 429

Query: 210 NGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVR----D 265
           NG + +++L F EM      G   +  +  S++        LE    + D V       D
Sbjct: 430 NGHYDDTILHFNEMLRF---GMKPDDFTYGSVLKACAALRSLEYGLMVHDKVIKSGLGSD 486

Query: 266 EISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRA 325
               ++++D Y   G +  A  L   +  +  V+W A++SG   N+   EA   F EM  
Sbjct: 487 AFVASTVVDMYCKCGIIDEAQKLHDRIGGQQVVSWNAILSGFSLNKESEEAQKFFSEMLD 546

Query: 326 HGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDN 385
            G+ P + TF+ +       A I+LG+QIH  ++K E   D  + + L+ MYAKCG + +
Sbjct: 547 MGLKPDHFTFATVLDTCANLATIELGKQIHGQIIKQEMLDDEYISSTLVDMYAKCGDMPD 606

Query: 386 AYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSH 445
           +  +F  +  RD VSWN+M+ G++ HGL  E L++FE M +    PN  TF+ +L ACSH
Sbjct: 607 SLLVFEKVEKRDFVSWNAMICGYALHGLGVEALRMFERMQKENVVPNHATFVAVLRACSH 666

Query: 446 AGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWG 505
            GL   G   F+ M   YK++P  EH+  M+++LGR+   +EA +F+  +PF+ D  IW 
Sbjct: 667 VGLFDDGCRYFHLMTTHYKLEPQLEHFACMVDILGRSKGPQEAVKFINSMPFQADAVIWK 726

Query: 506 ALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLK 565
            LL  C   + + EIAE AA  +L LDP ++  +++L N+YA SG+  +  + R  +   
Sbjct: 727 TLLSICKIRQ-DVEIAELAASNVLLLDPDDSSVYILLSNVYAESGKWADVSRTRRLLKQG 785

Query: 566 GVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
            ++K PGCSW+     +  FL GDK   +  E+
Sbjct: 786 RLKKEPGCSWIEVQSEMHGFLVGDKAHPRSGEL 818



 Score =  187 bits (475), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 129/469 (27%), Positives = 224/469 (47%), Gaps = 20/469 (4%)

Query: 41  NVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMP 100
           N    N +L  + +    + ARR+F+ MP R+ VSW  M+   + AG +  A  LF+ MP
Sbjct: 51  NAFVSNCLLQMYARCAGAACARRVFDAMPRRDTVSWNTMLTAYSHAGDISTAVALFDGMP 110

Query: 101 ERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEE 160
           + +VVSWN++V G  + G   E+  +F  M  + V       A  ++ C   E + L  +
Sbjct: 111 DPDVVSWNALVSGYCQRGMFQESVDLFVEMARRGVSPDRTTFAVLLKSCSALEELSLGVQ 170

Query: 161 ME--------ERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGF 212
           +         E +V T ++++  Y +   +++  C F  MP +N VSW A I G   N  
Sbjct: 171 VHALAVKTGLEIDVRTGSALVDMYGKCRSLDDALCFFYGMPERNWVSWGAAIAGCVQNEQ 230

Query: 213 HKESLLLFIEMK----GICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEIS 268
           +   L LFIEM+    G+         +SC +M    +  GR   A  + +     D + 
Sbjct: 231 YVRGLELFIEMQRLGLGVSQPSYASAFRSCAAM--SCLNTGRQLHAHAIKNKFS-SDRVV 287

Query: 269 WTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGV 328
            T+++D Y     +++A   F  +P+       AM+ GLV+  L +EA  LF  M    +
Sbjct: 288 GTAIVDVYAKANSLTDARRAFFGLPNHTVETSNAMMVGLVRAGLGIEAMGLFQFMIRSSI 347

Query: 329 PPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYN 388
                + S +F A   T     G+Q+HC+ +K+  + D+ + N ++ +Y KC  +  AY 
Sbjct: 348 RFDVVSLSGVFSACAETKGYFQGQQVHCLAIKSGFDVDICVNNAVLDLYGKCKALMEAYL 407

Query: 389 IFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGL 448
           IF  M  +D VSWN+++     +G  ++T+  F  ML  G  P+  T+  +L AC+    
Sbjct: 408 IFQGMKQKDSVSWNAIIAALEQNGHYDDTILHFNEMLRFGMKPDDFTYGSVLKACAALRS 467

Query: 449 VSRGWELFNAMFDVYKIQPGPEHYV--SMINLLGRAGKIKEAEEFVLRL 495
           +  G  + +    V K   G + +V  +++++  + G I EA++   R+
Sbjct: 468 LEYGLMVHDK---VIKSGLGSDAFVASTVVDMYCKCGIIDEAQKLHDRI 513



 Score =  173 bits (438), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 140/563 (24%), Positives = 250/563 (44%), Gaps = 89/563 (15%)

Query: 33  LFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEA 92
           +F  MP+R+ VS+N ML+ +   G +S A  LF+ MP+ +VVSW A++ G    G   E+
Sbjct: 74  VFDAMPRRDTVSWNTMLTAYSHAGDISTAVALFDGMPDPDVVSWNALVSGYCQRGMFQES 133

Query: 93  RKLFEEMPERNVVSWNSMVVGLIRN----GELNEARKVFNSMPIK-----NVISWNAMIA 143
             LF EM  R V    +    L+++     EL+   +V +++ +K     +V + +A++ 
Sbjct: 134 VDLFVEMARRGVSPDRTTFAVLLKSCSALEELSLGVQV-HALAVKTGLEIDVRTGSALVD 192

Query: 144 GYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNV-VSWTA 202
            Y +C  + +A+  F  M ERN V+W + I+G  +  +   G  LF  M R  + VS  +
Sbjct: 193 MYGKCRSLDDALCFFYGMPERNWVSWGAAIAGCVQNEQYVRGLELFIEMQRLGLGVSQPS 252

Query: 203 MIGGF-------------------AWNGFHKESLL------LFIEMKGICDNGN------ 231
               F                     N F  + ++      ++ +   + D         
Sbjct: 253 YASAFRSCAAMSCLNTGRQLHAHAIKNKFSSDRVVGTAIVDVYAKANSLTDARRAFFGLP 312

Query: 232 NCNVQSCNSMINGYIRFGRLEEAQNL----------FDTVPVRDEISWTSMIDGYLSVGQ 281
           N  V++ N+M+ G +R G   EA  L          FD V +    S  +   GY    Q
Sbjct: 313 NHTVETSNAMMVGLVRAGLGIEAMGLFQFMIRSSIRFDVVSLSGVFSACAETKGYFQGQQ 372

Query: 282 VS-----------------------------NAYYLFHNMPDRDAVAWTAMISGLVQNEL 312
           V                               AY +F  M  +D+V+W A+I+ L QN  
Sbjct: 373 VHCLAIKSGFDVDICVNNAVLDLYGKCKALMEAYLIFQGMKQKDSVSWNAIIAALEQNGH 432

Query: 313 FVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENC 372
           + +    F EM   G+ P + T+  +  A  A  +++ G  +H  ++K+   SD  + + 
Sbjct: 433 YDDTILHFNEMLRFGMKPDDFTYGSVLKACAALRSLEYGLMVHDKVIKSGLGSDAFVAST 492

Query: 373 LISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPN 432
           ++ MY KCG+ID A  +   +  + +VSWN+++ GFS +  + E  K F  ML+ G  P+
Sbjct: 493 VVDMYCKCGIIDEAQKLHDRIGGQQVVSWNAILSGFSLNKESEEAQKFFSEMLDMGLKPD 552

Query: 433 SVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVS--MINLLGRAGKIKEAEE 490
             TF  +L  C++   +  G ++      + K +   + Y+S  ++++  + G + ++  
Sbjct: 553 HFTFATVLDTCANLATIELGKQIHG---QIIKQEMLDDEYISSTLVDMYAKCGDMPDS-L 608

Query: 491 FVLRLPFEPDHRIWGALLGACGF 513
            V     + D   W A++  CG+
Sbjct: 609 LVFEKVEKRDFVSWNAMI--CGY 629



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 108/418 (25%), Positives = 203/418 (48%), Gaps = 40/418 (9%)

Query: 132 IKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRR 191
           + N    N ++  Y  C     A  +F+ M  R+ V+W +M++ Y  AG++     LF  
Sbjct: 49  VPNAFVSNCLLQMYARCAGAACARRVFDAMPRRDTVSWNTMLTAYSHAGDISTAVALFDG 108

Query: 192 MPRKNVVSWTAMIGGFAWNGFHKESLLLFIEM--KGICDNGNNCNV--QSCNSMINGYIR 247
           MP  +VVSW A++ G+   G  +ES+ LF+EM  +G+  +     V  +SC+++    + 
Sbjct: 109 MPDPDVVSWNALVSGYCQRGMFQESVDLFVEMARRGVSPDRTTFAVLLKSCSALEE--LS 166

Query: 248 FGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGL 307
            G    A  +   + + D  + ++++D Y     + +A   F+ MP+R+ V+W A I+G 
Sbjct: 167 LGVQVHALAVKTGLEI-DVRTGSALVDMYGKCRSLDDALCFFYGMPERNWVSWGAAIAGC 225

Query: 308 VQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDL 367
           VQNE +V    LF+EM+  G+     +++  F +  A + ++ GRQ+H   +K +  SD 
Sbjct: 226 VQNEQYVRGLELFIEMQRLGLGVSQPSYASAFRSCAAMSCLNTGRQLHAHAIKNKFSSDR 285

Query: 368 ILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLES 427
           ++   ++ +YAK   + +A   F  + +  + + N+M++G    GL  E + +F+ M+ S
Sbjct: 286 VVGTAIVDVYAKANSLTDARRAFFGLPNHTVETSNAMMVGLVRAGLGIEAMGLFQFMIRS 345

Query: 428 GTHPNSVTFLGILSACS-----------HAGLVSRGWELF----NAMFDVY-KIQPGPEH 471
               + V+  G+ SAC+           H   +  G+++     NA+ D+Y K +   E 
Sbjct: 346 SIRFDVVSLSGVFSACAETKGYFQGQQVHCLAIKSGFDVDICVNNAVLDLYGKCKALMEA 405

Query: 472 YV--------------SMINLLGRAGKIKEA---EEFVLRLPFEPDHRIWGALLGACG 512
           Y+              ++I  L + G   +       +LR   +PD   +G++L AC 
Sbjct: 406 YLIFQGMKQKDSVSWNAIIAALEQNGHYDDTILHFNEMLRFGMKPDDFTYGSVLKACA 463


>gi|297610920|ref|NP_001065364.2| Os10g0558600 [Oryza sativa Japonica Group]
 gi|255679629|dbj|BAF27201.2| Os10g0558600 [Oryza sativa Japonica Group]
          Length = 863

 Score =  285 bits (728), Expect = 7e-74,   Method: Compositional matrix adjust.
 Identities = 185/633 (29%), Positives = 307/633 (48%), Gaps = 57/633 (9%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPE------- 70
           +  Y K   +D+A   F  MP+RN VS+ A ++G +QN +      LF EM         
Sbjct: 191 VDMYGKCRSLDDALCFFYGMPERNWVSWGAAIAGCVQNEQYVRGLELFIEMQRLGLGVSQ 250

Query: 71  --------------------------------RNVVSWTAMICGLADAGRVCEARKLFEE 98
                                            + V  TA++   A A  + +AR+ F  
Sbjct: 251 PSYASAFRSCAAMSCLNTGRQLHAHAIKNKFSSDRVVGTAIVDVYAKANSLTDARRAFFG 310

Query: 99  MPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAM-IAGYVECCMMGEAIVL 157
           +P   V + N+M+VGL+R G   EA  +F  M I++ I ++ + ++G    C   +    
Sbjct: 311 LPNHTVETSNAMMVGLVRAGLGIEAMGLFQFM-IRSSIRFDVVSLSGVFSACAETKGYFQ 369

Query: 158 FEEME--------ERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAW 209
            +++         + ++    +++  Y +   + E Y +F+ M +K+ VSW A+I     
Sbjct: 370 GQQVHCLAIKSGFDVDICVNNAVLDLYGKCKALMEAYLIFQGMKQKDSVSWNAIIAALEQ 429

Query: 210 NGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVR----D 265
           NG + +++L F EM      G   +  +  S++        LE    + D V       D
Sbjct: 430 NGHYDDTILHFNEMLRF---GMKPDDFTYGSVLKACAALRSLEYGLMVHDKVIKSGLGSD 486

Query: 266 EISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRA 325
               ++++D Y   G +  A  L   +  +  V+W A++SG   N+   EA   F EM  
Sbjct: 487 AFVASTVVDMYCKCGIIDEAQKLHDRIGGQQVVSWNAILSGFSLNKESEEAQKFFSEMLD 546

Query: 326 HGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDN 385
            G+ P + TF+ +       A I+LG+QIH  ++K E   D  + + L+ MYAKCG + +
Sbjct: 547 MGLKPDHFTFATVLDTCANLATIELGKQIHGQIIKQEMLDDEYISSTLVDMYAKCGDMPD 606

Query: 386 AYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSH 445
           +  +F  +  RD VSWN+M+ G++ HGL  E L++FE M +    PN  TF+ +L ACSH
Sbjct: 607 SLLVFEKVEKRDFVSWNAMICGYALHGLGVEALRMFERMQKENVVPNHATFVAVLRACSH 666

Query: 446 AGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWG 505
            GL   G   F+ M   YK++P  EH+  M+++LGR+   +EA +F+  +PF+ D  IW 
Sbjct: 667 VGLFDDGCRYFHLMTTHYKLEPQLEHFACMVDILGRSKGPQEAVKFINSMPFQADAVIWK 726

Query: 506 ALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLK 565
            LL  C   + + EIAE AA  +L LDP ++  +++L N+YA SG+  +  + R  +   
Sbjct: 727 TLLSICKIRQ-DVEIAELAASNVLLLDPDDSSVYILLSNVYAESGKWADVSRTRRLLKQG 785

Query: 566 GVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
            ++K PGCSW+     +  FL GDK   +  E+
Sbjct: 786 RLKKEPGCSWIEVQSEMHGFLVGDKAHPRSGEL 818



 Score =  187 bits (474), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 128/464 (27%), Positives = 223/464 (48%), Gaps = 20/464 (4%)

Query: 46  NAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVV 105
           N +L  + +    + ARR+F+ MP R+ VSW  M+   + AG +  A  LF+ MP+ +VV
Sbjct: 56  NCLLQMYARCAGAACARRVFDAMPRRDTVSWNTMLTAYSHAGDISTAVALFDGMPDPDVV 115

Query: 106 SWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEME--- 162
           SWN++V G  + G   E+  +F  M  + V       A  ++ C   E + L  ++    
Sbjct: 116 SWNALVSGYCQRGMFQESVDLFVEMARRGVSPDRTTFAVLLKSCSALEELSLGVQVHALA 175

Query: 163 -----ERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESL 217
                E +V T ++++  Y +   +++  C F  MP +N VSW A I G   N  +   L
Sbjct: 176 VKTGLEIDVRTGSALVDMYGKCRSLDDALCFFYGMPERNWVSWGAAIAGCVQNEQYVRGL 235

Query: 218 LLFIEMK----GICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMI 273
            LFIEM+    G+         +SC +M    +  GR   A  + +     D +  T+++
Sbjct: 236 ELFIEMQRLGLGVSQPSYASAFRSCAAM--SCLNTGRQLHAHAIKNKFS-SDRVVGTAIV 292

Query: 274 DGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNA 333
           D Y     +++A   F  +P+       AM+ GLV+  L +EA  LF  M    +     
Sbjct: 293 DVYAKANSLTDARRAFFGLPNHTVETSNAMMVGLVRAGLGIEAMGLFQFMIRSSIRFDVV 352

Query: 334 TFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNM 393
           + S +F A   T     G+Q+HC+ +K+  + D+ + N ++ +Y KC  +  AY IF  M
Sbjct: 353 SLSGVFSACAETKGYFQGQQVHCLAIKSGFDVDICVNNAVLDLYGKCKALMEAYLIFQGM 412

Query: 394 VSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGW 453
             +D VSWN+++     +G  ++T+  F  ML  G  P+  T+  +L AC+    +  G 
Sbjct: 413 KQKDSVSWNAIIAALEQNGHYDDTILHFNEMLRFGMKPDDFTYGSVLKACAALRSLEYGL 472

Query: 454 ELFNAMFDVYKIQPGPEHYV--SMINLLGRAGKIKEAEEFVLRL 495
            + +    V K   G + +V  +++++  + G I EA++   R+
Sbjct: 473 MVHDK---VIKSGLGSDAFVASTVVDMYCKCGIIDEAQKLHDRI 513



 Score =  173 bits (438), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 140/563 (24%), Positives = 250/563 (44%), Gaps = 89/563 (15%)

Query: 33  LFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEA 92
           +F  MP+R+ VS+N ML+ +   G +S A  LF+ MP+ +VVSW A++ G    G   E+
Sbjct: 74  VFDAMPRRDTVSWNTMLTAYSHAGDISTAVALFDGMPDPDVVSWNALVSGYCQRGMFQES 133

Query: 93  RKLFEEMPERNVVSWNSMVVGLIRN----GELNEARKVFNSMPIK-----NVISWNAMIA 143
             LF EM  R V    +    L+++     EL+   +V +++ +K     +V + +A++ 
Sbjct: 134 VDLFVEMARRGVSPDRTTFAVLLKSCSALEELSLGVQV-HALAVKTGLEIDVRTGSALVD 192

Query: 144 GYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNV-VSWTA 202
            Y +C  + +A+  F  M ERN V+W + I+G  +  +   G  LF  M R  + VS  +
Sbjct: 193 MYGKCRSLDDALCFFYGMPERNWVSWGAAIAGCVQNEQYVRGLELFIEMQRLGLGVSQPS 252

Query: 203 MIGGF-------------------AWNGFHKESLL------LFIEMKGICDNGN------ 231
               F                     N F  + ++      ++ +   + D         
Sbjct: 253 YASAFRSCAAMSCLNTGRQLHAHAIKNKFSSDRVVGTAIVDVYAKANSLTDARRAFFGLP 312

Query: 232 NCNVQSCNSMINGYIRFGRLEEAQNL----------FDTVPVRDEISWTSMIDGYLSVGQ 281
           N  V++ N+M+ G +R G   EA  L          FD V +    S  +   GY    Q
Sbjct: 313 NHTVETSNAMMVGLVRAGLGIEAMGLFQFMIRSSIRFDVVSLSGVFSACAETKGYFQGQQ 372

Query: 282 VS-----------------------------NAYYLFHNMPDRDAVAWTAMISGLVQNEL 312
           V                               AY +F  M  +D+V+W A+I+ L QN  
Sbjct: 373 VHCLAIKSGFDVDICVNNAVLDLYGKCKALMEAYLIFQGMKQKDSVSWNAIIAALEQNGH 432

Query: 313 FVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENC 372
           + +    F EM   G+ P + T+  +  A  A  +++ G  +H  ++K+   SD  + + 
Sbjct: 433 YDDTILHFNEMLRFGMKPDDFTYGSVLKACAALRSLEYGLMVHDKVIKSGLGSDAFVAST 492

Query: 373 LISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPN 432
           ++ MY KCG+ID A  +   +  + +VSWN+++ GFS +  + E  K F  ML+ G  P+
Sbjct: 493 VVDMYCKCGIIDEAQKLHDRIGGQQVVSWNAILSGFSLNKESEEAQKFFSEMLDMGLKPD 552

Query: 433 SVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVS--MINLLGRAGKIKEAEE 490
             TF  +L  C++   +  G ++      + K +   + Y+S  ++++  + G + ++  
Sbjct: 553 HFTFATVLDTCANLATIELGKQIHG---QIIKQEMLDDEYISSTLVDMYAKCGDMPDS-L 608

Query: 491 FVLRLPFEPDHRIWGALLGACGF 513
            V     + D   W A++  CG+
Sbjct: 609 LVFEKVEKRDFVSWNAMI--CGY 629


>gi|14165320|gb|AAK55452.1|AC069300_7 putative PPR repeat protein [Oryza sativa Japonica Group]
 gi|31433484|gb|AAP54989.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 905

 Score =  284 bits (727), Expect = 7e-74,   Method: Compositional matrix adjust.
 Identities = 185/633 (29%), Positives = 307/633 (48%), Gaps = 57/633 (9%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPE------- 70
           +  Y K   +D+A   F  MP+RN VS+ A ++G +QN +      LF EM         
Sbjct: 233 VDMYGKCRSLDDALCFFYGMPERNWVSWGAAIAGCVQNEQYVRGLELFIEMQRLGLGVSQ 292

Query: 71  --------------------------------RNVVSWTAMICGLADAGRVCEARKLFEE 98
                                            + V  TA++   A A  + +AR+ F  
Sbjct: 293 PSYASAFRSCAAMSCLNTGRQLHAHAIKNKFSSDRVVGTAIVDVYAKANSLTDARRAFFG 352

Query: 99  MPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAM-IAGYVECCMMGEAIVL 157
           +P   V + N+M+VGL+R G   EA  +F  M I++ I ++ + ++G    C   +    
Sbjct: 353 LPNHTVETSNAMMVGLVRAGLGIEAMGLFQFM-IRSSIRFDVVSLSGVFSACAETKGYFQ 411

Query: 158 FEEME--------ERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAW 209
            +++         + ++    +++  Y +   + E Y +F+ M +K+ VSW A+I     
Sbjct: 412 GQQVHCLAIKSGFDVDICVNNAVLDLYGKCKALMEAYLIFQGMKQKDSVSWNAIIAALEQ 471

Query: 210 NGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVR----D 265
           NG + +++L F EM      G   +  +  S++        LE    + D V       D
Sbjct: 472 NGHYDDTILHFNEMLRF---GMKPDDFTYGSVLKACAALRSLEYGLMVHDKVIKSGLGSD 528

Query: 266 EISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRA 325
               ++++D Y   G +  A  L   +  +  V+W A++SG   N+   EA   F EM  
Sbjct: 529 AFVASTVVDMYCKCGIIDEAQKLHDRIGGQQVVSWNAILSGFSLNKESEEAQKFFSEMLD 588

Query: 326 HGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDN 385
            G+ P + TF+ +       A I+LG+QIH  ++K E   D  + + L+ MYAKCG + +
Sbjct: 589 MGLKPDHFTFATVLDTCANLATIELGKQIHGQIIKQEMLDDEYISSTLVDMYAKCGDMPD 648

Query: 386 AYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSH 445
           +  +F  +  RD VSWN+M+ G++ HGL  E L++FE M +    PN  TF+ +L ACSH
Sbjct: 649 SLLVFEKVEKRDFVSWNAMICGYALHGLGVEALRMFERMQKENVVPNHATFVAVLRACSH 708

Query: 446 AGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWG 505
            GL   G   F+ M   YK++P  EH+  M+++LGR+   +EA +F+  +PF+ D  IW 
Sbjct: 709 VGLFDDGCRYFHLMTTHYKLEPQLEHFACMVDILGRSKGPQEAVKFINSMPFQADAVIWK 768

Query: 506 ALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLK 565
            LL  C   + + EIAE AA  +L LDP ++  +++L N+YA SG+  +  + R  +   
Sbjct: 769 TLLSICKIRQ-DVEIAELAASNVLLLDPDDSSVYILLSNVYAESGKWADVSRTRRLLKQG 827

Query: 566 GVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
            ++K PGCSW+     +  FL GDK   +  E+
Sbjct: 828 RLKKEPGCSWIEVQSEMHGFLVGDKAHPRSGEL 860



 Score =  187 bits (475), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 128/464 (27%), Positives = 223/464 (48%), Gaps = 20/464 (4%)

Query: 46  NAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVV 105
           N +L  + +    + ARR+F+ MP R+ VSW  M+   + AG +  A  LF+ MP+ +VV
Sbjct: 98  NCLLQMYARCAGAACARRVFDAMPRRDTVSWNTMLTAYSHAGDISTAVALFDGMPDPDVV 157

Query: 106 SWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEME--- 162
           SWN++V G  + G   E+  +F  M  + V       A  ++ C   E + L  ++    
Sbjct: 158 SWNALVSGYCQRGMFQESVDLFVEMARRGVSPDRTTFAVLLKSCSALEELSLGVQVHALA 217

Query: 163 -----ERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESL 217
                E +V T ++++  Y +   +++  C F  MP +N VSW A I G   N  +   L
Sbjct: 218 VKTGLEIDVRTGSALVDMYGKCRSLDDALCFFYGMPERNWVSWGAAIAGCVQNEQYVRGL 277

Query: 218 LLFIEMK----GICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMI 273
            LFIEM+    G+         +SC +M    +  GR   A  + +     D +  T+++
Sbjct: 278 ELFIEMQRLGLGVSQPSYASAFRSCAAM--SCLNTGRQLHAHAIKNKFS-SDRVVGTAIV 334

Query: 274 DGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNA 333
           D Y     +++A   F  +P+       AM+ GLV+  L +EA  LF  M    +     
Sbjct: 335 DVYAKANSLTDARRAFFGLPNHTVETSNAMMVGLVRAGLGIEAMGLFQFMIRSSIRFDVV 394

Query: 334 TFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNM 393
           + S +F A   T     G+Q+HC+ +K+  + D+ + N ++ +Y KC  +  AY IF  M
Sbjct: 395 SLSGVFSACAETKGYFQGQQVHCLAIKSGFDVDICVNNAVLDLYGKCKALMEAYLIFQGM 454

Query: 394 VSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGW 453
             +D VSWN+++     +G  ++T+  F  ML  G  P+  T+  +L AC+    +  G 
Sbjct: 455 KQKDSVSWNAIIAALEQNGHYDDTILHFNEMLRFGMKPDDFTYGSVLKACAALRSLEYGL 514

Query: 454 ELFNAMFDVYKIQPGPEHYV--SMINLLGRAGKIKEAEEFVLRL 495
            + +    V K   G + +V  +++++  + G I EA++   R+
Sbjct: 515 MVHD---KVIKSGLGSDAFVASTVVDMYCKCGIIDEAQKLHDRI 555



 Score =  173 bits (438), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 140/563 (24%), Positives = 250/563 (44%), Gaps = 89/563 (15%)

Query: 33  LFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEA 92
           +F  MP+R+ VS+N ML+ +   G +S A  LF+ MP+ +VVSW A++ G    G   E+
Sbjct: 116 VFDAMPRRDTVSWNTMLTAYSHAGDISTAVALFDGMPDPDVVSWNALVSGYCQRGMFQES 175

Query: 93  RKLFEEMPERNVVSWNSMVVGLIRN----GELNEARKVFNSMPIK-----NVISWNAMIA 143
             LF EM  R V    +    L+++     EL+   +V +++ +K     +V + +A++ 
Sbjct: 176 VDLFVEMARRGVSPDRTTFAVLLKSCSALEELSLGVQV-HALAVKTGLEIDVRTGSALVD 234

Query: 144 GYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNV-VSWTA 202
            Y +C  + +A+  F  M ERN V+W + I+G  +  +   G  LF  M R  + VS  +
Sbjct: 235 MYGKCRSLDDALCFFYGMPERNWVSWGAAIAGCVQNEQYVRGLELFIEMQRLGLGVSQPS 294

Query: 203 MIGGF-------------------AWNGFHKESLL------LFIEMKGICDNGN------ 231
               F                     N F  + ++      ++ +   + D         
Sbjct: 295 YASAFRSCAAMSCLNTGRQLHAHAIKNKFSSDRVVGTAIVDVYAKANSLTDARRAFFGLP 354

Query: 232 NCNVQSCNSMINGYIRFGRLEEAQNL----------FDTVPVRDEISWTSMIDGYLSVGQ 281
           N  V++ N+M+ G +R G   EA  L          FD V +    S  +   GY    Q
Sbjct: 355 NHTVETSNAMMVGLVRAGLGIEAMGLFQFMIRSSIRFDVVSLSGVFSACAETKGYFQGQQ 414

Query: 282 VS-----------------------------NAYYLFHNMPDRDAVAWTAMISGLVQNEL 312
           V                               AY +F  M  +D+V+W A+I+ L QN  
Sbjct: 415 VHCLAIKSGFDVDICVNNAVLDLYGKCKALMEAYLIFQGMKQKDSVSWNAIIAALEQNGH 474

Query: 313 FVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENC 372
           + +    F EM   G+ P + T+  +  A  A  +++ G  +H  ++K+   SD  + + 
Sbjct: 475 YDDTILHFNEMLRFGMKPDDFTYGSVLKACAALRSLEYGLMVHDKVIKSGLGSDAFVAST 534

Query: 373 LISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPN 432
           ++ MY KCG+ID A  +   +  + +VSWN+++ GFS +  + E  K F  ML+ G  P+
Sbjct: 535 VVDMYCKCGIIDEAQKLHDRIGGQQVVSWNAILSGFSLNKESEEAQKFFSEMLDMGLKPD 594

Query: 433 SVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVS--MINLLGRAGKIKEAEE 490
             TF  +L  C++   +  G ++      + K +   + Y+S  ++++  + G + ++  
Sbjct: 595 HFTFATVLDTCANLATIELGKQIHG---QIIKQEMLDDEYISSTLVDMYAKCGDMPDS-L 650

Query: 491 FVLRLPFEPDHRIWGALLGACGF 513
            V     + D   W A++  CG+
Sbjct: 651 LVFEKVEKRDFVSWNAMI--CGY 671



 Score =  152 bits (385), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 107/411 (26%), Positives = 201/411 (48%), Gaps = 40/411 (9%)

Query: 139 NAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVV 198
           N ++  Y  C     A  +F+ M  R+ V+W +M++ Y  AG++     LF  MP  +VV
Sbjct: 98  NCLLQMYARCAGAACARRVFDAMPRRDTVSWNTMLTAYSHAGDISTAVALFDGMPDPDVV 157

Query: 199 SWTAMIGGFAWNGFHKESLLLFIEM--KGICDNGNNCNV--QSCNSMINGYIRFGRLEEA 254
           SW A++ G+   G  +ES+ LF+EM  +G+  +     V  +SC+++    +  G    A
Sbjct: 158 SWNALVSGYCQRGMFQESVDLFVEMARRGVSPDRTTFAVLLKSCSALEE--LSLGVQVHA 215

Query: 255 QNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFV 314
             +   + + D  + ++++D Y     + +A   F+ MP+R+ V+W A I+G VQNE +V
Sbjct: 216 LAVKTGLEI-DVRTGSALVDMYGKCRSLDDALCFFYGMPERNWVSWGAAIAGCVQNEQYV 274

Query: 315 EATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLI 374
               LF+EM+  G+     +++  F +  A + ++ GRQ+H   +K +  SD ++   ++
Sbjct: 275 RGLELFIEMQRLGLGVSQPSYASAFRSCAAMSCLNTGRQLHAHAIKNKFSSDRVVGTAIV 334

Query: 375 SMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSV 434
            +YAK   + +A   F  + +  + + N+M++G    GL  E + +F+ M+ S    + V
Sbjct: 335 DVYAKANSLTDARRAFFGLPNHTVETSNAMMVGLVRAGLGIEAMGLFQFMIRSSIRFDVV 394

Query: 435 TFLGILSACS-----------HAGLVSRGWELF----NAMFDVY-KIQPGPEHYV----- 473
           +  G+ SAC+           H   +  G+++     NA+ D+Y K +   E Y+     
Sbjct: 395 SLSGVFSACAETKGYFQGQQVHCLAIKSGFDVDICVNNAVLDLYGKCKALMEAYLIFQGM 454

Query: 474 ---------SMINLLGRAGKIKEA---EEFVLRLPFEPDHRIWGALLGACG 512
                    ++I  L + G   +       +LR   +PD   +G++L AC 
Sbjct: 455 KQKDSVSWNAIIAALEQNGHYDDTILHFNEMLRFGMKPDDFTYGSVLKACA 505


>gi|224133790|ref|XP_002327681.1| predicted protein [Populus trichocarpa]
 gi|222836766|gb|EEE75159.1| predicted protein [Populus trichocarpa]
          Length = 654

 Score =  284 bits (727), Expect = 8e-74,   Method: Compositional matrix adjust.
 Identities = 165/476 (34%), Positives = 255/476 (53%), Gaps = 33/476 (6%)

Query: 126 VFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEG 185
           +FN +   N   +NA+I GY+    + E+   +  M +  VV  +   +   +A   +  
Sbjct: 102 IFNQVNYPNPFLYNALIRGYLIEERLKESTEFYSLMRKEGVVPVSFTFTALFKACGAKMD 161

Query: 186 YCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGY 245
             L R++  +     T ++GGF                      G + +V   NSMI+ Y
Sbjct: 162 VGLGRQIHGQ-----TILVGGF----------------------GEDLHVG--NSMIDMY 192

Query: 246 IRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMIS 305
           I+ G LE  + +FD +P RD ISWT +I  Y+  G + +A  LF  +P +D VAWT M+S
Sbjct: 193 IKCGFLECGRKVFDEMPNRDVISWTELISAYVKSGNMESAGELFDGLPVKDMVAWTVMVS 252

Query: 306 GLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTE--S 363
           G  QN    EA   F +M+  GV     T   +  A            I  V  K+E   
Sbjct: 253 GFAQNAKPREAIMFFEKMQEFGVETDEITLIGVISACAQLGAAKYADWIRDVAEKSEFGG 312

Query: 364 ESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFES 423
           +  +++ + LI MY+KCG + +AY +F  M  R++ S++SM++GF+ HG  ++ +K+F+ 
Sbjct: 313 KHSVVVGSALIDMYSKCGSVGDAYRVFQGMKERNVYSYSSMILGFAMHGRVHDAMKLFDE 372

Query: 424 MLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAG 483
           M+++   PN VTF+G+L+ACSHAG+V +GW++F  M   Y I+P  +HY  M++LLGRAG
Sbjct: 373 MVKTEIKPNRVTFIGVLTACSHAGMVEQGWQIFELMEKCYGIKPSADHYTCMVDLLGRAG 432

Query: 484 KIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLC 543
           +++EA E V  +P EP   +WGALLGAC     + +IA  AA  L EL+P     +++L 
Sbjct: 433 RLQEAHELVKTMPIEPHGGVWGALLGACRI-HKSPDIAAIAANHLFELEPYCIGNYILLA 491

Query: 544 NIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGG-IQMFLSGDKIPAQVAEI 598
           NIYA+ GR  +   +R  M  +G+RK P  SW+    G +  F SGD    +  EI
Sbjct: 492 NIYASCGRWNDVSTVRKLMRTRGLRKNPAFSWIESEKGMVHEFFSGDMTHPRSGEI 547



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 75/262 (28%), Positives = 136/262 (51%), Gaps = 16/262 (6%)

Query: 16  SSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVS 75
           S I  Y K GF++  + +F  MP R+V+S+  ++S ++++G +  A  LF+ +P +++V+
Sbjct: 187 SMIDMYIKCGFLECGRKVFDEMPNRDVISWTELISAYVKSGNMESAGELFDGLPVKDMVA 246

Query: 76  WTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRN-GELNEA------RKVFN 128
           WT M+ G A   +  EA   FE+M E  V +    ++G+I    +L  A      R V  
Sbjct: 247 WTVMVSGFAQNAKPREAIMFFEKMQEFGVETDEITLIGVISACAQLGAAKYADWIRDVAE 306

Query: 129 SMPI---KNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEG 185
                   +V+  +A+I  Y +C  +G+A  +F+ M+ERNV +++SMI G+   G V + 
Sbjct: 307 KSEFGGKHSVVVGSALIDMYSKCGSVGDAYRVFQGMKERNVYSYSSMILGFAMHGRVHDA 366

Query: 186 YCLFRRMPRK----NVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSM 241
             LF  M +     N V++  ++   +  G  ++   +F  M+       + +  +C  M
Sbjct: 367 MKLFDEMVKTEIKPNRVTFIGVLTACSHAGMVEQGWQIFELMEKCYGIKPSADHYTC--M 424

Query: 242 INGYIRFGRLEEAQNLFDTVPV 263
           ++   R GRL+EA  L  T+P+
Sbjct: 425 VDLLGRAGRLQEAHELVKTMPI 446



 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 75/277 (27%), Positives = 135/277 (48%), Gaps = 23/277 (8%)

Query: 46  NAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVV 105
           N+M+  +++ G L   R++F+EMP R+V+SWT +I     +G +  A +LF+ +P +++V
Sbjct: 186 NSMIDMYIKCGFLECGRKVFDEMPNRDVISWTELISAYVKSGNMESAGELFDGLPVKDMV 245

Query: 106 SWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVE-CCMMGEAIV------LF 158
           +W  MV G  +N +  EA   F  M    V +    + G +  C  +G A        + 
Sbjct: 246 AWTVMVSGFAQNAKPREAIMFFEKMQEFGVETDEITLIGVISACAQLGAAKYADWIRDVA 305

Query: 159 EEME---ERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKE 215
           E+ E   + +VV  +++I  Y + G V + Y +F+ M  +NV S+++MI GFA +G   +
Sbjct: 306 EKSEFGGKHSVVVGSALIDMYSKCGSVGDAYRVFQGMKERNVYSYSSMILGFAMHGRVHD 365

Query: 216 SLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTV-------PVRDEIS 268
           ++ LF EM       N         ++      G +E+   +F+ +       P  D   
Sbjct: 366 AMKLFDEMVKTEIKPNRVTFI---GVLTACSHAGMVEQGWQIFELMEKCYGIKPSADH-- 420

Query: 269 WTSMIDGYLSVGQVSNAYYLFHNMP-DRDAVAWTAMI 304
           +T M+D     G++  A+ L   MP +     W A++
Sbjct: 421 YTCMVDLLGRAGRLQEAHELVKTMPIEPHGGVWGALL 457



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 65/251 (25%), Positives = 112/251 (44%), Gaps = 51/251 (20%)

Query: 7   PKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFE 66
           P   V+  T  I+ Y K G ++ A  LF  +P +++V++  M+SGF QN +  EA   FE
Sbjct: 209 PNRDVISWTELISAYVKSGNMESAGELFDGLPVKDMVAWTVMVSGFAQNAKPREAIMFFE 268

Query: 67  EMPE-----------------------------------------RNVVSWTAMICGLAD 85
           +M E                                          +VV  +A+I   + 
Sbjct: 269 KMQEFGVETDEITLIGVISACAQLGAAKYADWIRDVAEKSEFGGKHSVVVGSALIDMYSK 328

Query: 86  AGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGY 145
            G V +A ++F+ M ERNV S++SM++G   +G +++A K+F+ M    +        G 
Sbjct: 329 CGSVGDAYRVFQGMKERNVYSYSSMILGFAMHGRVHDAMKLFDEMVKTEIKPNRVTFIGV 388

Query: 146 VECC----MMGEAIVLFEEME-----ERNVVTWTSMISGYCRAGEVEEGYCLFRRMP-RK 195
           +  C    M+ +   +FE ME     + +   +T M+    RAG ++E + L + MP   
Sbjct: 389 LTACSHAGMVEQGWQIFELMEKCYGIKPSADHYTCMVDLLGRAGRLQEAHELVKTMPIEP 448

Query: 196 NVVSWTAMIGG 206
           +   W A++G 
Sbjct: 449 HGGVWGALLGA 459


>gi|255584337|ref|XP_002532904.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223527338|gb|EEF29484.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 604

 Score =  284 bits (727), Expect = 8e-74,   Method: Compositional matrix adjust.
 Identities = 168/518 (32%), Positives = 270/518 (52%), Gaps = 20/518 (3%)

Query: 92  ARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMM 151
           A  +F ++ + NV  +N+++   ++N +  +A   F  M    + + N      ++ C  
Sbjct: 74  AVNVFNQIQDPNVHLYNTLIRAHVQNSQSLKAFATFFDMQKNGLFADNFTYPFLLKACN- 132

Query: 152 GEAIVLFEEMEERNVVTW---------TSMISGYCRAGEVEEGYC--LFRRMPRKNVVSW 200
           G+  +   +M   +V  +          S+I  Y + G +   Y   LF  M  K++VSW
Sbjct: 133 GKGWLPTVQMIHCHVEKYGFFGDLFVPNSLIDSYSKCGLLGVNYAMKLFMEMGEKDLVSW 192

Query: 201 TAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDT 260
            +MIGG    G    +  LF EM          +  S N++++GY++ G + +A NLF+ 
Sbjct: 193 NSMIGGLVKAGDLGRARKLFDEMA-------ERDAVSWNTILDGYVKAGEMSQAFNLFEK 245

Query: 261 VPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLF 320
           +P R+ +SW++M+ GY   G +  A  LF  MP ++ V WT +ISG  +  L  EAT L+
Sbjct: 246 MPERNVVSWSTMVSGYCKTGDMEMARMLFDKMPFKNLVTWTIIISGFAEKGLAKEATTLY 305

Query: 321 MEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKC 380
            +M A G+ P + T   +  A   +  + LG+++H  + K   +  + + N L+ MYAKC
Sbjct: 306 NQMEAAGLKPDDGTLISILAACAESGLLVLGKKVHASIKKIRIKCSVNVSNALVDMYAKC 365

Query: 381 GVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGIL 440
           G +D A +IF+ M  RDLVSWN M+ G + HG   + +++F  M + G  P+ VT + IL
Sbjct: 366 GRVDKALSIFNEMSMRDLVSWNCMLQGLAMHGHGEKAIQLFSKMQQEGFKPDKVTLIAIL 425

Query: 441 SACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPD 500
            AC+HAG V +G   FN+M   + I P  EHY  MI+LLGR G+++EA   V  +P EP+
Sbjct: 426 CACTHAGFVDQGLSYFNSMERDHGIVPHIEHYGCMIDLLGRGGRLEEAFRLVQSMPMEPN 485

Query: 501 HRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRM 560
             IWG LLGAC        +AE    RL+ L+  +   + +L NI+AA+G       +R+
Sbjct: 486 DVIWGTLLGACR-VHNAVPLAEKVLDRLITLEQSDPGNYSMLSNIFAAAGDWNSVANMRL 544

Query: 561 DMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
            M   GV+K  G S +  +  +  F   DK   +  +I
Sbjct: 545 QMKSTGVQKPSGASSIELDDEVHEFTVFDKSHPETDKI 582



 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 102/355 (28%), Positives = 172/355 (48%), Gaps = 79/355 (22%)

Query: 16  SSITKYSKRGF--IDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNV 73
           S I  YSK G   ++ A  LF  M ++++VS+N+M+ G ++ G L  AR+LF+EM ER+ 
Sbjct: 161 SLIDSYSKCGLLGVNYAMKLFMEMGEKDLVSWNSMIGGLVKAGDLGRARKLFDEMAERDA 220

Query: 74  VSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIK 133
           VSW  ++ G   AG + +A  LFE+MPERNVVSW++MV G  + G++  AR +F+ MP K
Sbjct: 221 VSWNTILDGYVKAGEMSQAFNLFEKMPERNVVSWSTMVSGYCKTGDMEMARMLFDKMPFK 280

Query: 134 NVISWNAMIAGYVECCMMGEAIVLFEEMEER----------------------------- 164
           N+++W  +I+G+ E  +  EA  L+ +ME                               
Sbjct: 281 NLVTWTIIISGFAEKGLAKEATTLYNQMEAAGLKPDDGTLISILAACAESGLLVLGKKVH 340

Query: 165 ----------NVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHK 214
                     +V    +++  Y + G V++   +F  M  +++VSW  M+ G A +G  +
Sbjct: 341 ASIKKIRIKCSVNVSNALVDMYAKCGRVDKALSIFNEMSMRDLVSWNCMLQGLAMHGHGE 400

Query: 215 ESLLLFIEMKG-------------IC--------------------DNGNNCNVQSCNSM 241
           +++ LF +M+              +C                    D+G   +++    M
Sbjct: 401 KAIQLFSKMQQEGFKPDKVTLIAILCACTHAGFVDQGLSYFNSMERDHGIVPHIEHYGCM 460

Query: 242 INGYIRFGRLEEAQNLFDTVPVR-DEISWTSMIDGYLSVGQVSNAYYLFHNMPDR 295
           I+   R GRLEEA  L  ++P+  +++ W ++    L   +V NA  L   + DR
Sbjct: 461 IDLLGRGGRLEEAFRLVQSMPMEPNDVIWGTL----LGACRVHNAVPLAEKVLDR 511



 Score = 85.9 bits (211), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 64/234 (27%), Positives = 110/234 (47%), Gaps = 19/234 (8%)

Query: 271 SMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPP 330
            +I  +    Q++ A  +F+ + D +   +  +I   VQN   ++A   F +M+ +G+  
Sbjct: 60  KLISAFSLCHQMNLAVNVFNQIQDPNVHLYNTLIRAHVQNSQSLKAFATFFDMQKNGLFA 119

Query: 331 LNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGV--IDNAYN 388
            N T+  L  A      +   + IHC + K     DL + N LI  Y+KCG+  ++ A  
Sbjct: 120 DNFTYPFLLKACNGKGWLPTVQMIHCHVEKYGFFGDLFVPNSLIDSYSKCGLLGVNYAMK 179

Query: 389 IFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGL 448
           +F  M  +DLVSWNSM+ G    G      K+F+ M E     ++V++  IL     AG 
Sbjct: 180 LFMEMGEKDLVSWNSMIGGLVKAGDLGRARKLFDEMAER----DAVSWNTILDGYVKAGE 235

Query: 449 VSRGWELFNAMFDVYKIQPGPEHYV----SMINLLGRAGKIKEAEEFVLRLPFE 498
           +S+ + LF  M         PE  V    +M++   + G ++ A     ++PF+
Sbjct: 236 MSQAFNLFEKM---------PERNVVSWSTMVSGYCKTGDMEMARMLFDKMPFK 280



 Score = 40.4 bits (93), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 20/96 (20%), Positives = 50/96 (52%)

Query: 352 RQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHH 411
           +++H  ++K    +DL +   LIS ++ C  ++ A N+F+ +   ++  +N+++     +
Sbjct: 40  KEVHAQIIKRNLHNDLYVAPKLISAFSLCHQMNLAVNVFNQIQDPNVHLYNTLIRAHVQN 99

Query: 412 GLANETLKVFESMLESGTHPNSVTFLGILSACSHAG 447
             + +    F  M ++G   ++ T+  +L AC+  G
Sbjct: 100 SQSLKAFATFFDMQKNGLFADNFTYPFLLKACNGKG 135


>gi|357154827|ref|XP_003576915.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like, partial [Brachypodium distachyon]
          Length = 735

 Score =  284 bits (727), Expect = 8e-74,   Method: Compositional matrix adjust.
 Identities = 184/623 (29%), Positives = 315/623 (50%), Gaps = 57/623 (9%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPER----NV 73
           +  Y+  G   +A+ +F  MP R+VVS+N+++S FL N    +AR+    M       NV
Sbjct: 118 VAFYAACGHAGDARRVFDEMPARDVVSWNSLVSSFLANKMFDDARQALLSMMRSGVPVNV 177

Query: 74  VSWTAMI--CGL-ADAGRVCEARKLFEEMPERNVVSWNSMVVGLI-RNGELNEARKVFNS 129
            S  +++  CG+  + G       L  +    ++V+  + +V +  + G +  + KVF  
Sbjct: 178 ASLVSVVPACGVEQEGGFGLGVHGLVLKTGLDSIVNLGNALVDMYGKFGHVEASMKVFEG 237

Query: 130 MPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEER------------------------- 164
           MP +N +SWN+ I  ++   + G+ + LF  M ER                         
Sbjct: 238 MPERNEVSWNSAIGCFLNAGLYGDVLALFRGMSERGFMPGSITLSSLLPALVELGYFDLG 297

Query: 165 --------------NVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWN 210
                         ++    S++  Y + G +E+   +F ++  +NVVSW AMI     N
Sbjct: 298 REVHGYSIKRAMELDIFVANSLVDMYAKFGSLEKACAVFEKIEVRNVVSWNAMIANLVQN 357

Query: 211 GFHKESLLLFIEMK--GICDNGNNCN--VQSCNSMINGYIRFGRLEEAQNLFDTVPVRDE 266
           G   E+  L I+M+  G C N       + +C+ M +  ++ G+   A ++  T  + D 
Sbjct: 358 GAESEAFGLVIKMQKDGECPNSITLVNLLPACSRMAS--LKTGKQIHAWSI-RTGLMFDL 414

Query: 267 ISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAH 326
               ++ID Y   GQ+  A  +F ++ ++D V++  +I G  Q+    E+  LF ++ + 
Sbjct: 415 FISNALIDMYAKCGQLRLAQSIF-DLSEKDDVSYNTLILGYSQSPWSFESLNLFKQLSSV 473

Query: 327 GVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNA 386
           G+     +F     A    ++   G++IH VL++    +   L N L+ +Y K G++D A
Sbjct: 474 GIEYDAISFMGALTACTNLSSFKQGKEIHGVLVRRLLSNHPFLANTLLGLYTKGGMLDTA 533

Query: 387 YNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHA 446
             IF+ +  +D+ SWN+M+MG+  HG  +    +F+ M + G   + V+++ +LS CSH 
Sbjct: 534 SKIFNRIKEKDVASWNNMIMGYGMHGQIDAAFHLFDLMKDHGVTYDHVSYIAVLSVCSHG 593

Query: 447 GLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGA 506
           GLV RG + F+ M     ++P   HY  M++LLGR+G++ E+ E +L +PF  +  +WGA
Sbjct: 594 GLVERGKKYFSHML-AQNLEPQQMHYACMVDLLGRSGQLTESVEIILDMPFHANSDVWGA 652

Query: 507 LLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKG 566
           LLGAC    GN E+A++AA  L EL P ++  + VL N+YA +GR  E HK+R  M  + 
Sbjct: 653 LLGACRI-HGNIELAQYAADHLFELKPEHSGYYSVLRNMYAEAGRWNEAHKIRTLMKSRK 711

Query: 567 VRKVPGCSWLMRNGGIQMFLSGD 589
           V+K P  SW+     +Q FL GD
Sbjct: 712 VQKNPAYSWVQSGNKLQAFLVGD 734



 Score =  173 bits (438), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 126/464 (27%), Positives = 222/464 (47%), Gaps = 19/464 (4%)

Query: 72  NVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMP 131
           +V +   ++   A  G   +AR++F+EMP R+VVSWNS+V   + N   ++AR+   SM 
Sbjct: 110 DVFAGNTLVAFYAACGHAGDARRVFDEMPARDVVSWNSLVSSFLANKMFDDARQALLSMM 169

Query: 132 IKNVISWNAMIAGYVECC--------MMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVE 183
              V    A +   V  C         +G   ++ +   +  V    +++  Y + G VE
Sbjct: 170 RSGVPVNVASLVSVVPACGVEQEGGFGLGVHGLVLKTGLDSIVNLGNALVDMYGKFGHVE 229

Query: 184 EGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMIN 243
               +F  MP +N VSW + IG F   G + + L LF   +G+ + G      + +S++ 
Sbjct: 230 ASMKVFEGMPERNEVSWNSAIGCFLNAGLYGDVLALF---RGMSERGFMPGSITLSSLLP 286

Query: 244 GYIRFGRLEEAQNLFDTVPVR----DEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVA 299
             +  G  +  + +      R    D     S++D Y   G +  A  +F  +  R+ V+
Sbjct: 287 ALVELGYFDLGREVHGYSIKRAMELDIFVANSLVDMYAKFGSLEKACAVFEKIEVRNVVS 346

Query: 300 WTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLM 359
           W AMI+ LVQN    EA  L ++M+  G  P + T   L  A    A++  G+QIH   +
Sbjct: 347 WNAMIANLVQNGAESEAFGLVIKMQKDGECPNSITLVNLLPACSRMASLKTGKQIHAWSI 406

Query: 360 KTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLK 419
           +T    DL + N LI MYAKCG +  A +IF ++  +D VS+N++++G+S    + E+L 
Sbjct: 407 RTGLMFDLFISNALIDMYAKCGQLRLAQSIF-DLSEKDDVSYNTLILGYSQSPWSFESLN 465

Query: 420 VFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLL 479
           +F+ +   G   ++++F+G L+AC++     +G E+   +     +   P    +++ L 
Sbjct: 466 LFKQLSSVGIEYDAISFMGALTACTNLSSFKQGKEIHGVLVRRL-LSNHPFLANTLLGLY 524

Query: 480 GRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEH 523
            + G +  A +   R+  E D   W  ++   G   G  + A H
Sbjct: 525 TKGGMLDTASKIFNRIK-EKDVASWNNMIMGYGM-HGQIDAAFH 566



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 97/376 (25%), Positives = 169/376 (44%), Gaps = 67/376 (17%)

Query: 132 IKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRR 191
           + +V + N ++A Y  C   G+A  +F+EM  R+VV+W S++S +      ++       
Sbjct: 108 LADVFAGNTLVAFYAACGHAGDARRVFDEMPARDVVSWNSLVSSFLANKMFDDARQALLS 167

Query: 192 MPRK----NVVSWTAMI--------GGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCN 239
           M R     NV S  +++        GGF   G     L+L   +  I + G        N
Sbjct: 168 MMRSGVPVNVASLVSVVPACGVEQEGGF---GLGVHGLVLKTGLDSIVNLG--------N 216

Query: 240 SMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVA 299
           ++++ Y +FG +E +  +F+ +P R+E+SW S I  +L+ G   +   LF  M +R    
Sbjct: 217 ALVDMYGKFGHVEASMKVFEGMPERNEVSWNSAIGCFLNAGLYGDVLALFRGMSER---- 272

Query: 300 WTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLM 359
                                      G  P + T S L  A       DLGR++H   +
Sbjct: 273 ---------------------------GFMPGSITLSSLLPALVELGYFDLGREVHGYSI 305

Query: 360 KTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLK 419
           K   E D+ + N L+ MYAK G ++ A  +F  +  R++VSWN+M+     +G  +E   
Sbjct: 306 KRAMELDIFVANSLVDMYAKFGSLEKACAVFEKIEVRNVVSWNAMIANLVQNGAESEAFG 365

Query: 420 VFESMLESGTHPNSVTFLGILSACSHAGLVSRG-----WELFNA-MFDVYKIQPGPEHYV 473
           +   M + G  PNS+T + +L ACS    +  G     W +    MFD++          
Sbjct: 366 LVIKMQKDGECPNSITLVNLLPACSRMASLKTGKQIHAWSIRTGLMFDLFISN------- 418

Query: 474 SMINLLGRAGKIKEAE 489
           ++I++  + G+++ A+
Sbjct: 419 ALIDMYAKCGQLRLAQ 434



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 67/264 (25%), Positives = 118/264 (44%), Gaps = 40/264 (15%)

Query: 229 NGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYL 288
           +G+  +V + N+++  Y   G   +A+ +FD +P RD +SW S++  +L+          
Sbjct: 105 SGHLADVFAGNTLVAFYAACGHAGDARRVFDEMPARDVVSWNSLVSSFLA---------- 154

Query: 289 FHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANI 348
                                N++F +A    + M   GVP   A+   +  A G     
Sbjct: 155 ---------------------NKMFDDARQALLSMMRSGVPVNVASLVSVVPACGVEQEG 193

Query: 349 DLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGF 408
             G  +H +++KT  +S + L N L+ MY K G ++ +  +F  M  R+ VSWNS +  F
Sbjct: 194 GFGLGVHGLVLKTGLDSIVNLGNALVDMYGKFGHVEASMKVFEGMPERNEVSWNSAIGCF 253

Query: 409 SHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPG 468
            + GL  + L +F  M E G  P S+T   +L A    G    G E+       Y I+  
Sbjct: 254 LNAGLYGDVLALFRGMSERGFMPGSITLSSLLPALVELGYFDLGREVHG-----YSIKRA 308

Query: 469 PEHYV----SMINLLGRAGKIKEA 488
            E  +    S++++  + G +++A
Sbjct: 309 MELDIFVANSLVDMYAKFGSLEKA 332



 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 91/410 (22%), Positives = 188/410 (45%), Gaps = 42/410 (10%)

Query: 16  SSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVS 75
           S +  Y+K G +++A A+F+ +  RNVVS+NAM++  +QNG  SEA  L  +M +     
Sbjct: 318 SLVDMYAKFGSLEKACAVFEKIEVRNVVSWNAMIANLVQNGAESEAFGLVIKMQKDGECP 377

Query: 76  WTAMICGLADAGRVCEARKLFEEMPERNVVSW--------NSMVVGLIRNGELNEARKVF 127
            +  +  L  A     + K  +++   ++ +         N+++    + G+L  A+ +F
Sbjct: 378 NSITLVNLLPACSRMASLKTGKQIHAWSIRTGLMFDLFISNALIDMYAKCGQLRLAQSIF 437

Query: 128 NSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEME----ERNVVTWTSMISGYCRAGEVE 183
           + +  K+ +S+N +I GY +     E++ LF+++     E + +++   ++        +
Sbjct: 438 D-LSEKDDVSYNTLILGYSQSPWSFESLNLFKQLSSVGIEYDAISFMGALTACTNLSSFK 496

Query: 184 EGY----CLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCN 239
           +G      L RR+   +      ++G +   G    +  +F  +K         +V S N
Sbjct: 497 QGKEIHGVLVRRLLSNHPFLANTLLGLYTKGGMLDTASKIFNRIK-------EKDVASWN 549

Query: 240 SMINGYIRFGRLEEAQNLFDTVP----VRDEISWTSMID-----GYLSVGQVSNAYYLFH 290
           +MI GY   G+++ A +LFD +       D +S+ +++      G +  G+   ++ L  
Sbjct: 550 NMIMGYGMHGQIDAAFHLFDLMKDHGVTYDHVSYIAVLSVCSHGGLVERGKKYFSHMLAQ 609

Query: 291 NMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDL 350
           N+  +  + +  M+  L ++    E+  + ++M  H    +   +  L GA     NI+L
Sbjct: 610 NLEPQQ-MHYACMVDLLGRSGQLTESVEIILDMPFHANSDV---WGALLGACRIHGNIEL 665

Query: 351 GRQI--HCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDL 398
            +    H   +K E        + L +MYA+ G  + A+ I + M SR +
Sbjct: 666 AQYAADHLFELKPEHSG---YYSVLRNMYAEAGRWNEAHKIRTLMKSRKV 712



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 49/164 (29%), Positives = 81/164 (49%), Gaps = 3/164 (1%)

Query: 283 SNAYYLFHN-MPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGA 341
           S+   LFH+ +  R A  W ++   L    L  EA  ++  M   GV P + TF     A
Sbjct: 24  SSRLLLFHHPLRLRSAFLWNSLSRALSSASLPTEALLVYNHMLRSGVSPDDRTFPFALHA 83

Query: 342 AGATANIDL--GRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLV 399
           A A A      G ++H   +++   +D+   N L++ YA CG   +A  +F  M +RD+V
Sbjct: 84  AAAAAQAHPAKGLELHAAALRSGHLADVFAGNTLVAFYAACGHAGDARRVFDEMPARDVV 143

Query: 400 SWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSAC 443
           SWNS+V  F  + + ++  +   SM+ SG   N  + + ++ AC
Sbjct: 144 SWNSLVSSFLANKMFDDARQALLSMMRSGVPVNVASLVSVVPAC 187


>gi|297827241|ref|XP_002881503.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297327342|gb|EFH57762.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 669

 Score =  284 bits (727), Expect = 8e-74,   Method: Compositional matrix adjust.
 Identities = 173/583 (29%), Positives = 294/583 (50%), Gaps = 35/583 (6%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWT 77
           I+ Y+++    +A  +F  +  RN  SYNA+L  +       +A  LF        +SW 
Sbjct: 64  ISFYTRQNRFHQALHVFDEITVRNAFSYNALLIAYTSREMYFDAFSLF--------LSWI 115

Query: 78  AMICGLADAGR-----VCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPI 132
              C  + A R     +    K      +  + S    V G +  G  +           
Sbjct: 116 GSSCYSSGAARPDSISISCVLKALSGCDDFWLGSLARQVHGFVIRGGSDS---------- 165

Query: 133 KNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRM 192
            +V   N +I  Y +C  +  A  +F+EM +R+VV+W SMISGY ++G  E+   L++ M
Sbjct: 166 -DVFVGNGLITYYTKCDNIESARKVFDEMSDRDVVSWNSMISGYSQSGSFEDCKKLYKAM 224

Query: 193 P-----RKNVVSWTAMIGGFAWNGFHKESLLLFIEM-KGICDNGNNCNVQSCNSMINGYI 246
                 + N V+  +++            L+  +E+ K + +N    ++  CN++I  Y 
Sbjct: 225 LGCSDFKPNEVTVISVLQACG----QSSDLVFGMEVHKKMIENHIQMDLSLCNAVIGFYA 280

Query: 247 RFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISG 306
           + G L+ A+ LFD +  +D +++ ++I GY++ G V  A  LF  M       W A+ISG
Sbjct: 281 KCGSLDYARALFDEMSEKDSVTYGAIISGYMAHGLVKEAMALFSEMESIGLSTWNAVISG 340

Query: 307 LVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESD 366
           L+QN    E    F EM   G  P   T S L  +   ++N+  G++IH   ++  S+++
Sbjct: 341 LMQNNHHEEVINSFREMIRCGSRPNTVTLSSLLPSLTYSSNLKGGKEIHAFAIRNGSDNN 400

Query: 367 LILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLE 426
           + +   +I  YAK G +  A  +F N   R L+ W +++  ++ HG ++    +F+ M  
Sbjct: 401 IYVTTSIIDNYAKLGFLLGAQRVFDNCKDRSLIVWTAIITAYAVHGDSDSACSLFDQMQC 460

Query: 427 SGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIK 486
            GT P++VT   +LSA +H+G   +   +F++M   Y I+PG EHY  M+++L RAGK+ 
Sbjct: 461 LGTKPDNVTLTAVLSAFAHSGDSDKAQHIFDSMLTKYNIEPGVEHYACMVSVLSRAGKLS 520

Query: 487 EAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIY 546
            A EF+ ++P EP  ++WGALL       G+ EIA  A  RL E++P N   + ++ N+Y
Sbjct: 521 NAMEFISKMPIEPIAKVWGALLNGASVL-GDVEIARFACDRLFEMEPENTGNYTIMANLY 579

Query: 547 AASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGD 589
             +GR  E   +R  M   G++K+PG SW+  N G++ F++ D
Sbjct: 580 TQAGRWEEAEVVRDKMKRIGLKKIPGTSWIETNKGLRSFIAKD 622



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 69/262 (26%), Positives = 124/262 (47%), Gaps = 14/262 (5%)

Query: 257 LFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEA 316
           +F   P  D    + +I  Y    +   A ++F  +  R+A ++ A++      E++ +A
Sbjct: 50  VFSIAP--DNFLASKLISFYTRQNRFHQALHVFDEITVRNAFSYNALLIAYTSREMYFDA 107

Query: 317 TYLFME------MRAHGVPPLNATFSVLFGAAGATANIDLG---RQIHCVLMKTESESDL 367
             LF+         +    P + + S +  A     +  LG   RQ+H  +++  S+SD+
Sbjct: 108 FSLFLSWIGSSCYSSGAARPDSISISCVLKALSGCDDFWLGSLARQVHGFVIRGGSDSDV 167

Query: 368 ILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLE- 426
            + N LI+ Y KC  I++A  +F  M  RD+VSWNSM+ G+S  G   +  K++++ML  
Sbjct: 168 FVGNGLITYYTKCDNIESARKVFDEMSDRDVVSWNSMISGYSQSGSFEDCKKLYKAMLGC 227

Query: 427 SGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIK 486
           S   PN VT + +L AC  +  +  G E+   M + + IQ       ++I    + G + 
Sbjct: 228 SDFKPNEVTVISVLQACGQSSDLVFGMEVHKKMIENH-IQMDLSLCNAVIGFYAKCGSLD 286

Query: 487 EAEEFVLRLPFEPDHRIWGALL 508
            A      +  E D   +GA++
Sbjct: 287 YARALFDEMS-EKDSVTYGAII 307



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 57/208 (27%), Positives = 102/208 (49%), Gaps = 21/208 (10%)

Query: 4   RNHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARR 63
           RN   + +   TS I  Y+K GF+  A+ +F     R+++ + A+++ +  +G    A  
Sbjct: 394 RNGSDNNIYVTTSIIDNYAKLGFLLGAQRVFDNCKDRSLIVWTAIITAYAVHGDSDSACS 453

Query: 64  LFEEM----PERNVVSWTAMICGLADAGRVCEARKLFEEM-----PERNVVSWNSMVVGL 114
           LF++M     + + V+ TA++   A +G   +A+ +F+ M      E  V  +  MV  L
Sbjct: 454 LFDQMQCLGTKPDNVTLTAVLSAFAHSGDSDKAQHIFDSMLTKYNIEPGVEHYACMVSVL 513

Query: 115 IRNGELNEARKVFNSMPIKNVIS-WNAMIAGYVECCMMGEAIV-------LFEEMEERNV 166
            R G+L+ A +  + MPI+ +   W A++ G     ++G+  +       LF EME  N 
Sbjct: 514 SRAGKLSNAMEFISKMPIEPIAKVWGALLNG---ASVLGDVEIARFACDRLF-EMEPENT 569

Query: 167 VTWTSMISGYCRAGEVEEGYCLFRRMPR 194
             +T M + Y +AG  EE   +  +M R
Sbjct: 570 GNYTIMANLYTQAGRWEEAEVVRDKMKR 597


>gi|357477961|ref|XP_003609266.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355510321|gb|AES91463.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 738

 Score =  284 bits (727), Expect = 8e-74,   Method: Compositional matrix adjust.
 Identities = 194/567 (34%), Positives = 297/567 (52%), Gaps = 33/567 (5%)

Query: 55  NGRLSEARRLFEEMPER---NVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMV 111
           +G LS A  LFEE  +    NV  W ++I G + +     +  LF  M    V   +   
Sbjct: 75  SGDLSYALSLFEENQQHHKHNVFIWNSLIRGYSLSSSPLSSLHLFSRMLYYGVQPNSHTF 134

Query: 112 VGLIRNGELNEAR---KVFNSMPIKNVISWN-----AMIAGYVECCMMGEAIVLFEEMEE 163
             L ++    +A    K  ++  +K  + +N     ++I  Y     M  A ++F++   
Sbjct: 135 PFLFKSCTKAKATHEGKQLHAHALKLALHFNPHVHTSVIHMYASVGEMDFARLVFDKSSL 194

Query: 164 RNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEM 223
           R+ V++T++I+GY   G +++   LF  +P K+VVSW AMI G+  +G  +E+++ F EM
Sbjct: 195 RDAVSFTALITGYVSQGCLDDARRLFDEIPVKDVVSWNAMISGYVQSGRFEEAIVCFYEM 254

Query: 224 K--GICDNGNNCNV--QSCNSMINGYIRFGRLEEAQNLFDTVPVRDE-----ISWT-SMI 273
           +   +  N +   V   +C     G+ R G L +    +    VRD      +  T ++I
Sbjct: 255 QEANVLPNKSTMVVVLSAC-----GHTRSGELGKWIGSW----VRDNGFGSNLQLTNALI 305

Query: 274 DGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNA 333
           D Y   G+   A  LF  + ++D ++W  MI G     L+ EA  LF  M    V P + 
Sbjct: 306 DMYCKCGETDIARELFDGIEEKDVISWNTMIGGYSYLSLYEEALALFEVMLRSNVKPNDV 365

Query: 334 TFSVLFGAAGATANIDLGRQIHCVLMKT-ESESDLILENCLISMYAKCGVIDNAYNIFSN 392
           TF  +  A      +DLG+ +H  + K   + S+  L   LI MYAKCG I+ A  +F +
Sbjct: 366 TFLGILHACACLGALDLGKWVHAYIDKNLRNSSNASLWTSLIDMYAKCGCIEAAERVFRS 425

Query: 393 MVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGT-HPNSVTFLGILSACSHAGLVSR 451
           M SR+L SWN+M+ GF+ HG A   L +F  M+  G   P+ +TF+G+LSAC+ AGLV  
Sbjct: 426 MHSRNLASWNAMLSGFAMHGHAERALALFSEMVNKGLFRPDDITFVGVLSACTQAGLVDL 485

Query: 452 GWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGAC 511
           G + F +M   Y I P  +HY  MI+LL RA K +EAE  +  +  EPD  IWG+LL AC
Sbjct: 486 GHQYFRSMIQDYGISPKLQHYGCMIDLLARAEKFEEAEILMKNMEMEPDGAIWGSLLSAC 545

Query: 512 GFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVP 571
               G  E  E+ A+RL +L+P NA A V+L NIYA +GR  +  ++R  +  KG++KVP
Sbjct: 546 K-AHGRVEFGEYVAERLFQLEPENAGAFVLLSNIYAGAGRWDDVARIRTRLNDKGMKKVP 604

Query: 572 GCSWLMRNGGIQMFLSGDKIPAQVAEI 598
           GC+ +  +G +  FL GDK   +   I
Sbjct: 605 GCTSIEIDGDVHEFLVGDKFHPECNNI 631



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 147/571 (25%), Positives = 226/571 (39%), Gaps = 148/571 (25%)

Query: 6   HPKSLVVHL-----TSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSE 60
           H   L +H      TS I  Y+  G +D A+ +F     R+ VS+ A+++G++  G L +
Sbjct: 156 HALKLALHFNPHVHTSVIHMYASVGEMDFARLVFDKSSLRDAVSFTALITGYVSQGCLDD 215

Query: 61  ARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVV------GL 114
           ARRLF+E+P ++VVSW AMI G   +GR  EA   F EM E NV+   S +V      G 
Sbjct: 216 ARRLFDEIPVKDVVSWNAMISGYVQSGRFEEAIVCFYEMQEANVLPNKSTMVVVLSACGH 275

Query: 115 IRNGELNE---------------------------------ARKVFNSMPIKNVISWNAM 141
            R+GEL +                                 AR++F+ +  K+VISWN M
Sbjct: 276 TRSGELGKWIGSWVRDNGFGSNLQLTNALIDMYCKCGETDIARELFDGIEEKDVISWNTM 335

Query: 142 IAGYVECCMMGEAIVLFEEMEERNV----VT----------------------------- 168
           I GY    +  EA+ LFE M   NV    VT                             
Sbjct: 336 IGGYSYLSLYEEALALFEVMLRSNVKPNDVTFLGILHACACLGALDLGKWVHAYIDKNLR 395

Query: 169 -------WTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFI 221
                  WTS+I  Y + G +E    +FR M  +N+ SW AM+ GFA +G  + +L LF 
Sbjct: 396 NSSNASLWTSLIDMYAKCGCIEAAERVFRSMHSRNLASWNAMLSGFAMHGHAERALALFS 455

Query: 222 EMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQ 281
           E                  M+N           + LF      D+I++  ++      G 
Sbjct: 456 E------------------MVN-----------KGLFRP----DDITFVGVLSACTQAGL 482

Query: 282 VSNAYYLFHNMPDRDAVA-----WTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFS 336
           V   +  F +M     ++     +  MI  L + E F EA  L   M    + P  A + 
Sbjct: 483 VDLGHQYFRSMIQDYGISPKLQHYGCMIDLLARAEKFEEAEILMKNME---MEPDGAIWG 539

Query: 337 VLFGAAGATANIDLGRQIHCVLMKTESESD---LILENCLISMYAKCGVIDNAYNIFSNM 393
            L  A  A   ++ G  +   L + E E+    ++L N    +YA  G  D+   I + +
Sbjct: 540 SLLSACKAHGRVEFGEYVAERLFQLEPENAGAFVLLSN----IYAGAGRWDDVARIRTRL 595

Query: 394 VSRDLV------------SWNSMVMGFSHHGLANETLKVFES----MLESGTHPNSVTFL 437
             + +               +  ++G   H   N   K+       + E+G  PN+   L
Sbjct: 596 NDKGMKKVPGCTSIEIDGDVHEFLVGDKFHPECNNIYKMLNEVDKLLEENGFVPNTSEVL 655

Query: 438 GILSACSHAGLVSRGWELFNAMFDVYKIQPG 468
             +      G +S+  E     F + K +PG
Sbjct: 656 YDMDEEWKEGALSQHSEKLAISFGLIKTKPG 686



 Score = 44.3 bits (103), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 40/157 (25%), Positives = 73/157 (46%), Gaps = 11/157 (7%)

Query: 347 NIDLGRQIHCVLMKTESESDLILENCLISMYA--KCGVIDNAYNIF---SNMVSRDLVSW 401
           NI+  +QIH +++KT   + + +++ LI   A    G +  A ++F         ++  W
Sbjct: 40  NINTFKQIHSLIIKTGLNNTVFVQSKLIHFCAVSPSGDLSYALSLFEENQQHHKHNVFIW 99

Query: 402 NSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFD 461
           NS++ G+S       +L +F  ML  G  PNS TF  +  +C+ A     G +L      
Sbjct: 100 NSLIRGYSLSSSPLSSLHLFSRMLYYGVQPNSHTFPFLFKSCTKAKATHEGKQLHAHALK 159

Query: 462 VYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFE 498
           +  +   P  + S+I++    G++  A     RL F+
Sbjct: 160 L-ALHFNPHVHTSVIHMYASVGEMDFA-----RLVFD 190


>gi|242076522|ref|XP_002448197.1| hypothetical protein SORBIDRAFT_06g022800 [Sorghum bicolor]
 gi|241939380|gb|EES12525.1| hypothetical protein SORBIDRAFT_06g022800 [Sorghum bicolor]
          Length = 766

 Score =  284 bits (727), Expect = 8e-74,   Method: Compositional matrix adjust.
 Identities = 183/636 (28%), Positives = 318/636 (50%), Gaps = 60/636 (9%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEM------PER 71
           IT Y + G  D A+ +F  M  RN VS+ A+++   QN R ++A  LF  M      P++
Sbjct: 89  ITMYGRCGAPDSARVVFDGMLDRNPVSWAAVIAAHAQNSRCADAMGLFSSMLRSGTMPDQ 148

Query: 72  ------------------------NVVSW---------TAMICGLADAGRVCEARKLFEE 98
                                     + W          A++   + +G V +   LFE 
Sbjct: 149 FALGSAICACSELGDLGLGRQVHAQAIKWESGSDLIVQNALVTMYSKSGSVGDGFALFER 208

Query: 99  MPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYV--ECCMMGEAIV 156
           + +++++SW S++ GL + G   +A ++F  M  + V   N    G V   C ++  ++ 
Sbjct: 209 IRDKDLISWGSIIAGLAQQGREMDALQIFREMIAEGVHHPNEFHFGSVFRACSVVVNSLE 268

Query: 157 LFEEME--------ERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFA 208
             E++         +RN     S+   Y R  E++    +F R+   ++VSW ++I  F+
Sbjct: 269 YGEQIHGVSVKYQLDRNSYAGCSLSDMYARCNELDSARKVFYRIESPDLVSWNSLINAFS 328

Query: 209 WNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVR---- 264
             G   E+++LF EM+   D+G   +  +  +++   + +  L + +++   +       
Sbjct: 329 AKGLLSEAMVLFSEMR---DSGLRPDGITVMALLCACVGYDALHQGRSIHSYLVKLGLGG 385

Query: 265 DEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMR 324
           D I   S++  Y      S+A  +FH   DRD V W ++++  VQ++  +E  +    + 
Sbjct: 386 DVIVSNSLLSMYARCLDFSSAMDVFHETHDRDVVTWNSILTACVQHQ-HLEDVFKLFSLL 444

Query: 325 AHGVPPLN-ATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVI 383
              +P L+  + + +  A+      ++ +Q+H    K     D +L N LI  YAKCG +
Sbjct: 445 HRSMPSLDRISLNNVLSASAELGYFEMVKQVHAYAFKVGLVGDAMLSNGLIDTYAKCGSL 504

Query: 384 DNAYNIFSNM-VSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSA 442
           D+A  +F  M   RD+ SW+S+++G++  G A E L +F  M   G  PN VTF+G+L+A
Sbjct: 505 DDANKLFEIMGTGRDVFSWSSLIVGYAQFGYAKEALDLFARMRNLGVKPNHVTFVGVLTA 564

Query: 443 CSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHR 502
           CS  GLV  G   ++ M   Y I P  EH   +++LL RAG++ EA +FV ++PFEPD  
Sbjct: 565 CSRVGLVDEGCYYYSIMKPEYGIVPTREHCSCVLDLLARAGRLSEAAKFVDQMPFEPDII 624

Query: 503 IWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDM 562
           +W  LL A      + ++ + AA+ +L +DP ++ A+V+LCNIYA+SG   E  +L+ DM
Sbjct: 625 MWKTLLAA-SRTHNDVDMGKRAAEGVLNIDPSHSAAYVLLCNIYASSGNWNEFARLKKDM 683

Query: 563 GLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
              GV+K PG SW+   G +++F+  D+   +  EI
Sbjct: 684 RSSGVQKSPGKSWIKLKGELKVFIVEDRSHPESDEI 719



 Score =  139 bits (350), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 105/416 (25%), Positives = 189/416 (45%), Gaps = 38/416 (9%)

Query: 41  NVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMP 100
           N +  N +++ + + G    AR +F+ M +RN VSW A+I   A   R  +A  LF  M 
Sbjct: 81  NTILSNHLITMYGRCGAPDSARVVFDGMLDRNPVSWAAVIAAHAQNSRCADAMGLFSSML 140

Query: 101 ERNVV----SWNSMVVGLIRNGELNEARKVFNSMPIK-----NVISWNAMIAGYVECCMM 151
               +    +  S +      G+L   R+V ++  IK     ++I  NA++  Y +   +
Sbjct: 141 RSGTMPDQFALGSAICACSELGDLGLGRQV-HAQAIKWESGSDLIVQNALVTMYSKSGSV 199

Query: 152 GEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNG 211
           G+   LFE + ++++++W S+I+G  + G   +   +FR M  + V            N 
Sbjct: 200 GDGFALFERIRDKDLISWGSIIAGLAQQGREMDALQIFREMIAEGV---------HHPNE 250

Query: 212 FHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTS 271
           FH  S+                  ++C+ ++N  + +G      ++   +  R+  +  S
Sbjct: 251 FHFGSVF-----------------RACSVVVNS-LEYGEQIHGVSVKYQLD-RNSYAGCS 291

Query: 272 MIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPL 331
           + D Y    ++ +A  +F+ +   D V+W ++I+      L  EA  LF EMR  G+ P 
Sbjct: 292 LSDMYARCNELDSARKVFYRIESPDLVSWNSLINAFSAKGLLSEAMVLFSEMRDSGLRPD 351

Query: 332 NATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFS 391
             T   L  A      +  GR IH  L+K     D+I+ N L+SMYA+C    +A ++F 
Sbjct: 352 GITVMALLCACVGYDALHQGRSIHSYLVKLGLGGDVIVSNSLLSMYARCLDFSSAMDVFH 411

Query: 392 NMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAG 447
               RD+V+WNS++     H    +  K+F  +  S    + ++   +LSA +  G
Sbjct: 412 ETHDRDVVTWNSILTACVQHQHLEDVFKLFSLLHRSMPSLDRISLNNVLSASAELG 467



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 120/460 (26%), Positives = 199/460 (43%), Gaps = 50/460 (10%)

Query: 56  GRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLI 115
           GRLS A R FE +P     +        A    +  A      +P+  +V          
Sbjct: 15  GRLSAALRAFESIPSSAASASAHDRLSPAAYAALVAACSRLRSLPQGRLVH--------- 65

Query: 116 RNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISG 175
           R+   + AR  F +    N I  N +I  Y  C     A V+F+ M +RN V+W ++I+ 
Sbjct: 66  RHLLASSARDRFLA---HNTILSNHLITMYGRCGAPDSARVVFDGMLDRNPVSWAAVIAA 122

Query: 176 YCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNV 235
           + +     +   LF  M R   +     +G                    IC        
Sbjct: 123 HAQNSRCADAMGLFSSMLRSGTMPDQFALG------------------SAIC-------- 156

Query: 236 QSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDR 295
            +C+ +  G +  GR   AQ +       D I   +++  Y   G V + + LF  + D+
Sbjct: 157 -ACSEL--GDLGLGRQVHAQAI-KWESGSDLIVQNALVTMYSKSGSVGDGFALFERIRDK 212

Query: 296 DAVAWTAMISGLVQNELFVEATYLFMEMRAHGV-PPLNATFSVLFGAAGATAN-IDLGRQ 353
           D ++W ++I+GL Q    ++A  +F EM A GV  P    F  +F A     N ++ G Q
Sbjct: 213 DLISWGSIIAGLAQQGREMDALQIFREMIAEGVHHPNEFHFGSVFRACSVVVNSLEYGEQ 272

Query: 354 IHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGL 413
           IH V +K + + +      L  MYA+C  +D+A  +F  + S DLVSWNS++  FS  GL
Sbjct: 273 IHGVSVKYQLDRNSYAGCSLSDMYARCNELDSARKVFYRIESPDLVSWNSLINAFSAKGL 332

Query: 414 ANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYV 473
            +E + +F  M +SG  P+ +T + +L AC     + +G  + + +    K+  G +  V
Sbjct: 333 LSEAMVLFSEMRDSGLRPDGITVMALLCACVGYDALHQGRSIHSYLV---KLGLGGDVIV 389

Query: 474 --SMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGAC 511
             S++++  R      A + V     + D   W ++L AC
Sbjct: 390 SNSLLSMYARCLDFSSAMD-VFHETHDRDVVTWNSILTAC 428


>gi|222616851|gb|EEE52983.1| hypothetical protein OsJ_35654 [Oryza sativa Japonica Group]
          Length = 632

 Score =  284 bits (727), Expect = 9e-74,   Method: Compositional matrix adjust.
 Identities = 160/441 (36%), Positives = 250/441 (56%), Gaps = 10/441 (2%)

Query: 133 KNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRM 192
           ++V+  NA++  Y     + +A  +F+EM ER+VV+WT+++ GY RAG  +E + LF RM
Sbjct: 176 ESVLVGNALVHFYANHKSLDDAGKVFDEMPERDVVSWTTLVDGYARAGLADEAWRLFCRM 235

Query: 193 P-----RKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIR 247
                 R N V+  A +      G     ++L    K + + G   +V   N++++ + +
Sbjct: 236 VVVGGMRPNAVTLVAAVSAIGQMGLLAFGIMLH---KYVTEGGVARSVNLDNALVDMFGK 292

Query: 248 FGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGL 307
            G +  A+ +FD + V+D  SWTSM++ Y   G + +A  LF +MP R+ V+W+ MI+  
Sbjct: 293 CGCVRYAREVFDGMEVKDVYSWTSMVNAYAKCGDLESAEQLFKDMPRRNVVSWSCMIAAY 352

Query: 308 VQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIH-CVLMKTESESD 366
            Q     EA +LF EM A GV P++AT   +  A      +DLGR I+   ++  +    
Sbjct: 353 SQLNQPEEAVWLFREMIAAGVDPIDATLVSVLSACAQLGCLDLGRWIYENYIVSNKIGLT 412

Query: 367 LILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLE 426
           + L N LI M+AKCG +  A  +F  M  R++VSWN+M+M  + HG + E +++FE +  
Sbjct: 413 VNLGNALIDMFAKCGDVGEASKLFDEMAERNVVSWNTMIMAHAVHGQSEEAIRLFEQLKG 472

Query: 427 SGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIK 486
               P+ +TFLG+L++CSH+GLVS G   F  M   Y+I+P  EHY  MI+LLG+ G ++
Sbjct: 473 ENIVPDQITFLGLLASCSHSGLVSEGRRYFKEMEMFYRIEPRVEHYACMIDLLGKVGLLE 532

Query: 487 EAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIY 546
           EA E    +P E D   WGALL AC    GN EI    A +L+ELDP ++  +V++  IY
Sbjct: 533 EAFEVARGMPMEADEAGWGALLNACRM-HGNVEIGACVADKLVELDPSDSGIYVLMSQIY 591

Query: 547 AASGRHVEEHKLRMDMGLKGV 567
           A+  +  +   LRM M  +G 
Sbjct: 592 ASKNKWDQVKMLRMTMRDRGT 612



 Score =  141 bits (356), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 106/388 (27%), Positives = 191/388 (49%), Gaps = 19/388 (4%)

Query: 41  NVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMP 100
           +V+  NA++  +  +  L +A ++F+EMPER+VVSWT ++ G A AG   EA +LF  M 
Sbjct: 177 SVLVGNALVHFYANHKSLDDAGKVFDEMPERDVVSWTTLVDGYARAGLADEAWRLFCRMV 236

Query: 101 -----ERNVVSWNSMVVGLIRNGELNEA----RKVFNSMPIKNVISWNAMIAGYVECCMM 151
                  N V+  + V  + + G L       + V      ++V   NA++  + +C  +
Sbjct: 237 VVGGMRPNAVTLVAAVSAIGQMGLLAFGIMLHKYVTEGGVARSVNLDNALVDMFGKCGCV 296

Query: 152 GEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNG 211
             A  +F+ ME ++V +WTSM++ Y + G++E    LF+ MPR+NVVSW+ MI  ++   
Sbjct: 297 RYAREVFDGMEVKDVYSWTSMVNAYAKCGDLESAEQLFKDMPRRNVVSWSCMIAAYSQLN 356

Query: 212 FHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWT- 270
             +E++ LF EM      G +    +  S+++   + G L+  + +++   V ++I  T 
Sbjct: 357 QPEEAVWLFREMIAA---GVDPIDATLVSVLSACAQLGCLDLGRWIYENYIVSNKIGLTV 413

Query: 271 ----SMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAH 326
               ++ID +   G V  A  LF  M +R+ V+W  MI     +    EA  LF +++  
Sbjct: 414 NLGNALIDMFAKCGDVGEASKLFDEMAERNVVSWNTMIMAHAVHGQSEEAIRLFEQLKGE 473

Query: 327 GVPPLNATFSVLFGAAGATANIDLGRQIHCVL-MKTESESDLILENCLISMYAKCGVIDN 385
            + P   TF  L  +   +  +  GR+    + M    E  +    C+I +  K G+++ 
Sbjct: 474 NIVPDQITFLGLLASCSHSGLVSEGRRYFKEMEMFYRIEPRVEHYACMIDLLGKVGLLEE 533

Query: 386 AYNIFSNM-VSRDLVSWNSMVMGFSHHG 412
           A+ +   M +  D   W +++     HG
Sbjct: 534 AFEVARGMPMEADEAGWGALLNACRMHG 561



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 79/271 (29%), Positives = 139/271 (51%), Gaps = 16/271 (5%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWT 77
           +  + K G +  A+ +F  M  ++V S+ +M++ + + G L  A +LF++MP RNVVSW+
Sbjct: 287 VDMFGKCGCVRYAREVFDGMEVKDVYSWTSMVNAYAKCGDLESAEQLFKDMPRRNVVSWS 346

Query: 78  AMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLI----RNGELNEARKVFNSMPIK 133
            MI   +   +  EA  LF EM    V   ++ +V ++    + G L+  R ++ +  + 
Sbjct: 347 CMIAAYSQLNQPEEAVWLFREMIAAGVDPIDATLVSVLSACAQLGCLDLGRWIYENYIVS 406

Query: 134 NVISW-----NAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCL 188
           N I       NA+I  + +C  +GEA  LF+EM ERNVV+W +MI  +   G+ EE   L
Sbjct: 407 NKIGLTVNLGNALIDMFAKCGDVGEASKLFDEMAERNVVSWNTMIMAHAVHGQSEEAIRL 466

Query: 189 FRRMPRKNVV----SWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMING 244
           F ++  +N+V    ++  ++   + +G   E    F EM+            +C  MI+ 
Sbjct: 467 FEQLKGENIVPDQITFLGLLASCSHSGLVSEGRRYFKEMEMFYRIEPRVEHYAC--MIDL 524

Query: 245 YIRFGRLEEAQNLFDTVPVR-DEISWTSMID 274
             + G LEEA  +   +P+  DE  W ++++
Sbjct: 525 LGKVGLLEEAFEVARGMPMEADEAGWGALLN 555



 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 99/355 (27%), Positives = 156/355 (43%), Gaps = 60/355 (16%)

Query: 7   PKSLVVHLTSSITKYSKRGFIDEAKALFQLMP-----QRNVVSYNAMLSGFLQNGRLSEA 61
           P+  VV  T+ +  Y++ G  DEA  LF  M      + N V+  A +S   Q G L+  
Sbjct: 205 PERDVVSWTTLVDGYARAGLADEAWRLFCRMVVVGGMRPNAVTLVAAVSAIGQMGLLAFG 264

Query: 62  RRLFEEMPE----RNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRN 117
             L + + E    R+V    A++      G V  AR++F+ M  ++V SW SMV    + 
Sbjct: 265 IMLHKYVTEGGVARSVNLDNALVDMFGKCGCVRYAREVFDGMEVKDVYSWTSMVNAYAKC 324

Query: 118 GELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNV----VTWTSMI 173
           G+L  A ++F  MP +NV+SW+ MIA Y +     EA+ LF EM    V     T  S++
Sbjct: 325 GDLESAEQLFKDMPRRNVVSWSCMIAAYSQLNQPEEAVWLFREMIAAGVDPIDATLVSVL 384

Query: 174 SG------------------------------------YCRAGEVEEGYCLFRRMPRKNV 197
           S                                     + + G+V E   LF  M  +NV
Sbjct: 385 SACAQLGCLDLGRWIYENYIVSNKIGLTVNLGNALIDMFAKCGDVGEASKLFDEMAERNV 444

Query: 198 VSWTAMIGGFAWNGFHKESLLLFIEMKG---ICDNGNNCN-VQSCNSMINGYIRFGR--L 251
           VSW  MI   A +G  +E++ LF ++KG   + D       + SC+   +G +  GR   
Sbjct: 445 VSWNTMIMAHAVHGQSEEAIRLFEQLKGENIVPDQITFLGLLASCSH--SGLVSEGRRYF 502

Query: 252 EEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMP-DRDAVAWTAMIS 305
           +E +  +   P  +   +  MID    VG +  A+ +   MP + D   W A+++
Sbjct: 503 KEMEMFYRIEPRVEH--YACMIDLLGKVGLLEEAFEVARGMPMEADEAGWGALLN 555


>gi|449530632|ref|XP_004172298.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Cucumis sativus]
          Length = 688

 Score =  284 bits (727), Expect = 9e-74,   Method: Compositional matrix adjust.
 Identities = 174/572 (30%), Positives = 291/572 (50%), Gaps = 24/572 (4%)

Query: 38  PQRNVVSYNAMLSGFLQNG-------RLSEARRLFEEMPERNVVSWTAMICGLADAGRVC 90
           P   V S    +  +L NG       +   AR L   + + N +    + C L D G   
Sbjct: 7   PSSPVFSKALEIKNYLSNGLNFFNQLKHIHARLLRLHLDQDNYLLNLILCCAL-DFGSTN 65

Query: 91  EARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCM 150
            ++ +F ++ E N+  WN+M+ GL+     ++A  ++ SM     +  N  I   ++ C 
Sbjct: 66  YSKLVFSQVKEPNIFLWNTMIRGLVSKDCFDDAIHLYGSMRGGGFLPNNFTIPFVLKACA 125

Query: 151 ------MGEAI--VLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTA 202
                 +G  I  +L +   + +V   TS++S Y +    ++   +F  +P KNVVSWTA
Sbjct: 126 RKLDVRLGLKIHSLLVKAGYDHDVFVKTSLLSLYVKCDNFDDALKVFDDIPDKNVVSWTA 185

Query: 203 MIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQ----NLF 258
           +I G+  +G  +E++  F   K + + G   +  S   ++    R G     +     + 
Sbjct: 186 IITGYISSGHFREAIGAF---KKLLEMGLKPDSFSLVKVLAACARLGDCTSGEWIDRYIS 242

Query: 259 DTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATY 318
           D+   R+    TS++D Y+  G +  A  +F  MP++D V+W+ MI G   N L  +A  
Sbjct: 243 DSGMGRNVFVATSLLDMYVKCGNLERANLIFSAMPEKDIVSWSTMIQGYAFNGLPQQALD 302

Query: 319 LFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYA 378
           LF +M++  + P   T   +  A      +DLG     ++ + E  S+ +L   LI MY+
Sbjct: 303 LFFQMQSENLKPDCYTMVGVLSACATLGALDLGIWASSLMDRNEFLSNPVLGTALIDMYS 362

Query: 379 KCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLG 438
           KCG +  A+ IF+ M  +D V WN+M++G S +G A     +F  + + G  P+  TF+G
Sbjct: 363 KCGSVTQAWEIFTAMKKKDRVVWNAMMVGLSMNGHAKAVFSLFSLVEKHGIRPDENTFIG 422

Query: 439 ILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFE 498
           +L  C+H G V+ G + FN M  V+ + P  EHY  M++LLGRAG + EA + +  +P +
Sbjct: 423 LLCGCTHGGFVNEGRQFFNNMKRVFSLTPSIEHYGCMVDLLGRAGLLNEAHQLINNMPMK 482

Query: 499 PDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKL 558
           P+  +WGALLG C     +  +AE   K+L+EL+P N+  +V L NIY+ + R  E  K+
Sbjct: 483 PNAVVWGALLGGCKL-HKDTHLAEQVLKKLIELEPWNSGNYVQLSNIYSGNHRWEEAEKI 541

Query: 559 RMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDK 590
           R  M  + ++K+  CSW+  +G +  FL GDK
Sbjct: 542 RSTMKEQQIQKIRACSWIEIDGIVHEFLVGDK 573



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 87/344 (25%), Positives = 152/344 (44%), Gaps = 54/344 (15%)

Query: 15  TSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEA----RRLFEEMPE 70
           TS ++ Y K    D+A  +F  +P +NVVS+ A+++G++ +G   EA    ++L E   +
Sbjct: 153 TSLLSLYVKCDNFDDALKVFDDIPDKNVVSWTAIITGYISSGHFREAIGAFKKLLEMGLK 212

Query: 71  RNVVSWTAMICGLADAGRVCEA----RKLFEEMPERNVVSWNSMVVGLIRNGELNEARKV 126
            +  S   ++   A  G         R + +    RNV    S++   ++ G L  A  +
Sbjct: 213 PDSFSLVKVLAACARLGDCTSGEWIDRYISDSGMGRNVFVATSLLDMYVKCGNLERANLI 272

Query: 127 FNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNV-------------------- 166
           F++MP K+++SW+ MI GY    +  +A+ LF +M+  N+                    
Sbjct: 273 FSAMPEKDIVSWSTMIQGYAFNGLPQQALDLFFQMQSENLKPDCYTMVGVLSACATLGAL 332

Query: 167 -------------------VTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGF 207
                              V  T++I  Y + G V + + +F  M +K+ V W AM+ G 
Sbjct: 333 DLGIWASSLMDRNEFLSNPVLGTALIDMYSKCGSVTQAWEIFTAMKKKDRVVWNAMMVGL 392

Query: 208 AWNGFHKESLLLF--IEMKGICDNGNNCNVQSCNSMINGYIRFGR--LEEAQNLFDTVPV 263
           + NG  K    LF  +E  GI  + N      C     G++  GR      + +F   P 
Sbjct: 393 SMNGHAKAVFSLFSLVEKHGIRPDENTFIGLLCGCTHGGFVNEGRQFFNNMKRVFSLTPS 452

Query: 264 RDEISWTSMIDGYLSVGQVSNAYYLFHNMPDR-DAVAWTAMISG 306
            +   +  M+D     G ++ A+ L +NMP + +AV W A++ G
Sbjct: 453 IEH--YGCMVDLLGRAGLLNEAHQLINNMPMKPNAVVWGALLGG 494



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 59/206 (28%), Positives = 97/206 (47%), Gaps = 28/206 (13%)

Query: 1   MSERNHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSE 60
           + +RN   S  V  T+ I  YSK G + +A  +F  M +++ V +NAM+ G   NG    
Sbjct: 341 LMDRNEFLSNPVLGTALIDMYSKCGSVTQAWEIFTAMKKKDRVVWNAMMVGLSMNGHAKA 400

Query: 61  ARRLFEEM------PERNVVSWTAMICGLADAGRVCEARKLFEEMPE-----RNVVSWNS 109
              LF  +      P+ N  ++  ++CG    G V E R+ F  M        ++  +  
Sbjct: 401 VFSLFSLVEKHGIRPDEN--TFIGLLCGCTHGGFVNEGRQFFNNMKRVFSLTPSIEHYGC 458

Query: 110 MVVGLIRNGELNEARKVFNSMPIK-NVISWNAMIAGYVECCMMGEAIVLFEEMEER---- 164
           MV  L R G LNEA ++ N+MP+K N + W A++ G    C + +   L E++ ++    
Sbjct: 459 MVDLLGRAGLLNEAHQLINNMPMKPNAVVWGALLGG----CKLHKDTHLAEQVLKKLIEL 514

Query: 165 ------NVVTWTSMISGYCRAGEVEE 184
                 N V  +++ SG  R  E E+
Sbjct: 515 EPWNSGNYVQLSNIYSGNHRWEEAEK 540


>gi|359493517|ref|XP_002264078.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g33350-like [Vitis vinifera]
          Length = 573

 Score =  284 bits (726), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 165/467 (35%), Positives = 245/467 (52%), Gaps = 33/467 (7%)

Query: 154 AIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKN------------VVSWT 201
           A  +F+ +E  NV  +T+MI+ Y    +      L+R M R+             + S T
Sbjct: 107 ARFIFDHVESPNVYLYTAMITAYASHSDHTSALLLYRNMVRRRRPWPNHFIYPHVLKSCT 166

Query: 202 AMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRF-GRLEEAQNLFDT 260
            ++G  +    H + L    E   +        VQ+  ++++ Y+RF   +E A+ LFD 
Sbjct: 167 QVVGPGSARMVHCQVLRSGFEQYPV--------VQT--ALLDAYLRFWSDVESARLLFDE 216

Query: 261 VPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLF 320
           +  R+ +SWT+MI GY  +GQ+ NA  LF  MP+RD  +W A+I+G  QN LF+EA  LF
Sbjct: 217 MTERNVVSWTAMISGYTRLGQIGNAVLLFEEMPERDVPSWNALIAGYTQNGLFMEALSLF 276

Query: 321 MEMRA-------HGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCL 373
             M A        G  P   T      A G T  + LG+ IH  + +     D  + N L
Sbjct: 277 RRMIAVEAGAWGQGNRPNQVTAVCSLSACGHTGMLRLGKWIHGYVYRNGLGLDSFVSNAL 336

Query: 374 ISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLE--SGTHP 431
           + MY KCG +  A  +F   + R L SWNSM+   + HG +   + VFE M+   SG  P
Sbjct: 337 VDMYGKCGCLKEARRVFDRTLERSLTSWNSMINCLALHGQSQNAISVFEEMMTCGSGVKP 396

Query: 432 NSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEF 491
           + VTF+G+L+AC+H GLV +GW  F  M   Y I+P  EHY  +++LLGRAG+ +EA E 
Sbjct: 397 DEVTFIGLLNACTHGGLVEKGWLYFELMTQNYGIEPQIEHYGCLVDLLGRAGQFEEAMEV 456

Query: 492 VLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGR 551
           V  +  EPD  IWG+LL  C    G+ ++AE + K+L+++DP N    ++L NIY   G+
Sbjct: 457 VRGMRIEPDEVIWGSLLNGCKI-HGHTDLAEFSIKKLIDMDPNNGGYGIMLANIYGELGK 515

Query: 552 HVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
             E  K+R  +  +   K PGCSW+  +  +  F S DK   +  EI
Sbjct: 516 WDEVRKVRKVLKEQNAHKTPGCSWIEIDNQVHQFYSVDKTHPRTEEI 562



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 78/293 (26%), Positives = 136/293 (46%), Gaps = 26/293 (8%)

Query: 27  IDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADA 86
           ++ A+ LF  M +RNVVS+ AM+SG+ + G++  A  LFEEMPER+V SW A+I G    
Sbjct: 207 VESARLLFDEMTERNVVSWTAMISGYTRLGQIGNAVLLFEEMPERDVPSWNALIAGYTQN 266

Query: 87  GRVCEARKLFEEMPERNVVSW------NSMV----------VGLIRNGELNEARKVFNSM 130
           G   EA  LF  M      +W      N +            G++R G+        N +
Sbjct: 267 GLFMEALSLFRRMIAVEAGAWGQGNRPNQVTAVCSLSACGHTGMLRLGKWIHGYVYRNGL 326

Query: 131 PIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFR 190
            + + +S NA++  Y +C  + EA  +F+   ER++ +W SMI+     G+ +    +F 
Sbjct: 327 GLDSFVS-NALVDMYGKCGCLKEARRVFDRTLERSLTSWNSMINCLALHGQSQNAISVFE 385

Query: 191 RM------PRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMING 244
            M       + + V++  ++      G  ++  L F  M    + G    ++    +++ 
Sbjct: 386 EMMTCGSGVKPDEVTFIGLLNACTHGGLVEKGWLYFELMTQ--NYGIEPQIEHYGCLVDL 443

Query: 245 YIRFGRLEEAQNLFDTVPVR-DEISWTSMIDGYLSVGQVSNAYYLFHNMPDRD 296
             R G+ EEA  +   + +  DE+ W S+++G    G    A +    + D D
Sbjct: 444 LGRAGQFEEAMEVVRGMRIEPDEVIWGSLLNGCKIHGHTDLAEFSIKKLIDMD 496



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 62/260 (23%), Positives = 110/260 (42%), Gaps = 45/260 (17%)

Query: 277 LSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVP-PLNATF 335
           L++  +S A ++F ++   +   +TAMI+    +     A  L+  M     P P +  +
Sbjct: 99  LALSNLSYARFIFDHVESPNVYLYTAMITAYASHSDHTSALLLYRNMVRRRRPWPNHFIY 158

Query: 336 SVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCL---------------------- 373
             +  +          R +HC ++++  E   +++  L                      
Sbjct: 159 PHVLKSCTQVVGPGSARMVHCQVLRSGFEQYPVVQTALLDAYLRFWSDVESARLLFDEMT 218

Query: 374 ----------ISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFES 423
                     IS Y + G I NA  +F  M  RD+ SWN+++ G++ +GL  E L +F  
Sbjct: 219 ERNVVSWTAMISGYTRLGQIGNAVLLFEEMPERDVPSWNALIAGYTQNGLFMEALSLFRR 278

Query: 424 MLE-------SGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVS-- 474
           M+         G  PN VT +  LSAC H G++  G  +      VY+   G + +VS  
Sbjct: 279 MIAVEAGAWGQGNRPNQVTAVCSLSACGHTGMLRLGKWIHGY---VYRNGLGLDSFVSNA 335

Query: 475 MINLLGRAGKIKEAEEFVLR 494
           ++++ G+ G +KEA     R
Sbjct: 336 LVDMYGKCGCLKEARRVFDR 355


>gi|224112156|ref|XP_002316102.1| predicted protein [Populus trichocarpa]
 gi|222865142|gb|EEF02273.1| predicted protein [Populus trichocarpa]
          Length = 665

 Score =  284 bits (726), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 180/615 (29%), Positives = 305/615 (49%), Gaps = 60/615 (9%)

Query: 15  TSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEM----PE 70
           T  ++ Y   G +D A+ +F  +P  + +S+  ++  +  N    +    +  M     E
Sbjct: 41  TKLVSLYGSFGRLDLARLVFDTIPHPDFLSWKVIIRWYFLNSEFRDIVGFYNRMRVCLKE 100

Query: 71  RNVVSWTAMICGLADAGRVCEARKLFEEM-----PERNVVSWNSMVVGLIRNGELNEARK 125
            + V ++ ++   +++    E RK+  ++     P+  V  +  +V    + GE+  +R 
Sbjct: 101 CDNVVFSHVLKACSESRNFDEGRKVHCQIVKFGNPDSFV--FTGLVDMYAKCGEIECSRS 158

Query: 126 VFNSMPIKNVISWNAMIAGYVECCMMGEAIVLF----EEMEERNVVT------------- 168
           VF+    +NV SW++MIAGYV+  +  + +VLF    EE+ E N +T             
Sbjct: 159 VFDENLDRNVFSWSSMIAGYVQNNLAQDGLVLFNRMREELIEANQITLGILVHACKKLGA 218

Query: 169 -----W-----------------TSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGG 206
                W                 T+++  Y + G V +   +F  +   ++VSWTAMI G
Sbjct: 219 LHQGKWLHGYLIKCGIELGSYLVTALLDLYAKCGVVRDARSVFDELHGIDIVSWTAMIVG 278

Query: 207 FAWNGFHKESLLLFIEMKGICDNGNNCNV----QSCNSMINGYIRFGRLEEAQNLFDTVP 262
           +  NG  +E+L LF++ + +    N+  +     SC+ ++N  +  GR      L   + 
Sbjct: 279 YTQNGCPEEALKLFLQKEQVAVLPNDVTIASVFSSCSQLLN--LNLGR--SIHGLSIKLG 334

Query: 263 VRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFME 322
            RD I   S++D Y       +A Y+F  + DRD VAW ++IS   QN    EA  LF +
Sbjct: 335 SRDPIVTNSLVDFYAKCQMNRDARYVFETISDRDVVAWNSIISAFSQNGSAYEALELFHQ 394

Query: 323 MRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTES-ESDLILENCLISMYAKCG 381
           MR   V P   T   +  A  +   + +G   H   +K     S++ +   L++ YAKCG
Sbjct: 395 MRMGSVLPDAVTLVSVLSACASLNALQVGSSFHAYAVKRGLLSSNVYVGTALLTFYAKCG 454

Query: 382 VIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILS 441
             ++A  IF  M  +  V+W++M+ G+   G    +L +F  ML++   PN   F  ILS
Sbjct: 455 DAESARVIFDGMDQKSTVTWSAMISGYGIQGNGRGSLSIFGDMLKAELKPNEEIFTSILS 514

Query: 442 ACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDH 501
           ACSH G++  GW LF  +   Y + P  +HY  M++LL RAG++KEA +F+ ++P +PD 
Sbjct: 515 ACSHTGMIGEGWRLFTMICQDYNLVPSTKHYTCMVDLLARAGRLKEALDFIQKMPVQPDV 574

Query: 502 RIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMD 561
            ++GA L  CG      ++ E A KR+LEL P +A  +V++CN+YA+  R  +  ++R  
Sbjct: 575 SLFGAFLHGCGL-HSRFDLGELAIKRMLELHPGDACYYVLMCNLYASDARWSKVKQVREL 633

Query: 562 MGLKGVRKVPGCSWL 576
           M  +G+ K PGCS +
Sbjct: 634 MKQRGLMKTPGCSLM 648



 Score =  155 bits (393), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 112/420 (26%), Positives = 191/420 (45%), Gaps = 42/420 (10%)

Query: 71  RNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSM 130
           R++   T ++      GR+  AR +F+ +P  + +SW  ++     N E  +    +N M
Sbjct: 35  RDLSCSTKLVSLYGSFGRLDLARLVFDTIPHPDFLSWKVIIRWYFLNSEFRDIVGFYNRM 94

Query: 131 PIKNVISWNAMIAGYVECCMMGE----------AIVLFEEMEERNVVTWTSMISGYCRAG 180
            +      N + +  ++ C               IV F   +      +T ++  Y + G
Sbjct: 95  RVCLKECDNVVFSHVLKACSESRNFDEGRKVHCQIVKFGNPDS---FVFTGLVDMYAKCG 151

Query: 181 EVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCN----VQ 236
           E+E    +F     +NV SW++MI G+  N   ++ L+LF  M+      N       V 
Sbjct: 152 EIECSRSVFDENLDRNVFSWSSMIAGYVQNNLAQDGLVLFNRMREELIEANQITLGILVH 211

Query: 237 SCNSM--------INGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYL 288
           +C  +        ++GY+    +E    L            T+++D Y   G V +A  +
Sbjct: 212 ACKKLGALHQGKWLHGYLIKCGIELGSYLV-----------TALLDLYAKCGVVRDARSV 260

Query: 289 FHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANI 348
           F  +   D V+WTAMI G  QN    EA  LF++     V P + T + +F +     N+
Sbjct: 261 FDELHGIDIVSWTAMIVGYTQNGCPEEALKLFLQKEQVAVLPNDVTIASVFSSCSQLLNL 320

Query: 349 DLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGF 408
           +LGR IH + +K  S  D I+ N L+  YAKC +  +A  +F  +  RD+V+WNS++  F
Sbjct: 321 NLGRSIHGLSIKLGSR-DPIVTNSLVDFYAKCQMNRDARYVFETISDRDVVAWNSIISAF 379

Query: 409 SHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPG 468
           S +G A E L++F  M      P++VT + +LSAC+    +  G     + F  Y ++ G
Sbjct: 380 SQNGSAYEALELFHQMRMGSVLPDAVTLVSVLSACASLNALQVG-----SSFHAYAVKRG 434



 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 109/485 (22%), Positives = 207/485 (42%), Gaps = 62/485 (12%)

Query: 6   HPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLF 65
           +P S V   T  +  Y+K G I+ ++++F     RNV S+++M++G++QN    +   LF
Sbjct: 134 NPDSFV--FTGLVDMYAKCGEIECSRSVFDENLDRNVFSWSSMIAGYVQNNLAQDGLVLF 191

Query: 66  ----EEMPERNVVSWTAMI---------------------CGL--------------ADA 86
               EE+ E N ++   ++                     CG+              A  
Sbjct: 192 NRMREELIEANQITLGILVHACKKLGALHQGKWLHGYLIKCGIELGSYLVTALLDLYAKC 251

Query: 87  GRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYV 146
           G V +AR +F+E+   ++VSW +M+VG  +NG   EA K+F       V+  +  IA   
Sbjct: 252 GVVRDARSVFDELHGIDIVSWTAMIVGYTQNGCPEEALKLFLQKEQVAVLPNDVTIASVF 311

Query: 147 ECCM------MGEAIV-LFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVS 199
             C       +G +I  L  ++  R+ +   S++  Y +     +   +F  +  ++VV+
Sbjct: 312 SSCSQLLNLNLGRSIHGLSIKLGSRDPIVTNSLVDFYAKCQMNRDARYVFETISDRDVVA 371

Query: 200 WTAMIGGFAWNGFHKESLLLFIEMKG---ICDNGNNCNVQSCNSMINGYIRFGRLEEAQN 256
           W ++I  F+ NG   E+L LF +M+    + D     +V S  + +N  ++ G    A  
Sbjct: 372 WNSIISAFSQNGSAYEALELFHQMRMGSVLPDAVTLVSVLSACASLNA-LQVGSSFHAYA 430

Query: 257 LFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEA 316
           +   +   +    T+++  Y   G   +A  +F  M  +  V W+AMISG         +
Sbjct: 431 VKRGLLSSNVYVGTALLTFYAKCGDAESARVIFDGMDQKSTVTWSAMISGYGIQGNGRGS 490

Query: 317 TYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILE----NC 372
             +F +M    + P    F+ +  A   T  I  G ++  ++ +   + +L+       C
Sbjct: 491 LSIFGDMLKAELKPNEEIFTSILSACSHTGMIGEGWRLFTMICQ---DYNLVPSTKHYTC 547

Query: 373 LISMYAKCGVIDNAYNIFSNM-VSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHP 431
           ++ + A+ G +  A +    M V  D+  + + + G   H   +      + MLE   HP
Sbjct: 548 MVDLLARAGRLKEALDFIQKMPVQPDVSLFGAFLHGCGLHSRFDLGELAIKRMLE--LHP 605

Query: 432 NSVTF 436
               +
Sbjct: 606 GDACY 610


>gi|242050128|ref|XP_002462808.1| hypothetical protein SORBIDRAFT_02g032350 [Sorghum bicolor]
 gi|241926185|gb|EER99329.1| hypothetical protein SORBIDRAFT_02g032350 [Sorghum bicolor]
          Length = 638

 Score =  284 bits (726), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 176/563 (31%), Positives = 291/563 (51%), Gaps = 30/563 (5%)

Query: 55  NGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGL 114
           +G L  ARRLF+ +P  + V +  +I    ++    EA +L   M  R ++     +  +
Sbjct: 59  HGVLCHARRLFDGIPGPDRVMYNTIIRAYCNSSCPREALRLHRGMLRRGILPNEFTLPFV 118

Query: 115 IRNGELNEARK--------VFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNV 166
           ++   + +AR+              +  V   NA++  Y     +G++   F+EM +RNV
Sbjct: 119 VKACTIAQAREHALAVHGVALRLGLVGQVFVGNALLHSYASAGSLGDSRRFFDEMVDRNV 178

Query: 167 VTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGI 226
           V+W SMI GY +AG+  E   LF  M R+          GF  + F   SLL+    +G 
Sbjct: 179 VSWNSMIGGYAQAGDTREVCSLFGEMRRQ----------GFLEDEFTLVSLLIACSQEGN 228

Query: 227 CD-----------NGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDG 275
            +           +G+  ++   +++++ Y + G L  A+  F+ +P++  +SWTSM+  
Sbjct: 229 LEIGRLVHCRMLVSGSRVDLILESALVDMYGKCGDLWMARRCFEMMPIKSVVSWTSMLCA 288

Query: 276 YLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATF 335
               G V+ A   F +MP+R+ V+W AMIS  VQ     EA  L+ +M++ G+ P   T 
Sbjct: 289 QTKHGSVNAARCWFDHMPERNIVSWNAMISCYVQRGQCHEALDLYNQMQSQGLAPDEITL 348

Query: 336 SVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVS 395
             +  A+G   ++ +G+ +H  +       D+ L N L+ MYAKCG +D A ++FS M +
Sbjct: 349 VAVLSASGRIGDLTVGKMVHLYIRDNIYNPDVSLVNSLLDMYAKCGQVDTAISLFSEMCN 408

Query: 396 RDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWEL 455
           R++VSWN ++ G + HG A +T+  F SM+     P+ +TF+ +LSACSH GL+  G   
Sbjct: 409 RNVVSWNVIIGGLAMHGRALDTITFFRSMVTDSFAPDGITFVALLSACSHGGLLETGQHY 468

Query: 456 FNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCE 515
           F +M  VY ++   EHY  M++LLGR G +++A   +  +P +PD  +WGALLGAC    
Sbjct: 469 FESMRHVYNVKHEVEHYACMVDLLGRRGHLEKAVCLIKEMPMKPDVVVWGALLGACRI-H 527

Query: 516 GNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSW 575
           GN +I     K+LLEL+ ++    V++ N+   + +  +  +LR  M   G RK  G S 
Sbjct: 528 GNVKIGRQVIKQLLELEGISGGLFVLISNLLYETHQWEDMKRLRKLMKEWGTRKDMGVSS 587

Query: 576 LMRNGGIQMFLSGDKIPAQVAEI 598
           +  N  I  F   D    + +EI
Sbjct: 588 IEINNSIHEFGVEDIRHERSSEI 610



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 92/371 (24%), Positives = 160/371 (43%), Gaps = 87/371 (23%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPER------ 71
           +  Y+  G + +++  F  M  RNVVS+N+M+ G+ Q G   E   LF EM  +      
Sbjct: 154 LHSYASAGSLGDSRRFFDEMVDRNVVSWNSMIGGYAQAGDTREVCSLFGEMRRQGFLEDE 213

Query: 72  ---------------------------------NVVSWTAMICGLADAGRVCEARKLFEE 98
                                            +++  +A++      G +  AR+ FE 
Sbjct: 214 FTLVSLLIACSQEGNLEIGRLVHCRMLVSGSRVDLILESALVDMYGKCGDLWMARRCFEM 273

Query: 99  MPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLF 158
           MP ++VVSW SM+    ++G +N AR  F+ MP +N++SWNAMI+ YV+     EA+ L+
Sbjct: 274 MPIKSVVSWTSMLCAQTKHGSVNAARCWFDHMPERNIVSWNAMISCYVQRGQCHEALDLY 333

Query: 159 EEMEER---------------------------------------NVVTWTSMISGYCRA 179
            +M+ +                                       +V    S++  Y + 
Sbjct: 334 NQMQSQGLAPDEITLVAVLSASGRIGDLTVGKMVHLYIRDNIYNPDVSLVNSLLDMYAKC 393

Query: 180 GEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCN 239
           G+V+    LF  M  +NVVSW  +IGG A +G   +++  F  M  + D+     + +  
Sbjct: 394 GQVDTAISLFSEMCNRNVVSWNVIIGGLAMHGRALDTITFFRSM--VTDSFAPDGI-TFV 450

Query: 240 SMINGYIRFGRLEEAQNLFDTVP----VRDEIS-WTSMIDGYLSVGQVSNAYYLFHNMPD 294
           ++++     G LE  Q+ F+++     V+ E+  +  M+D     G +  A  L   MP 
Sbjct: 451 ALLSACSHGGLLETGQHYFESMRHVYNVKHEVEHYACMVDLLGRRGHLEKAVCLIKEMPM 510

Query: 295 R-DAVAWTAMI 304
           + D V W A++
Sbjct: 511 KPDVVVWGALL 521



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 73/272 (26%), Positives = 135/272 (49%), Gaps = 15/272 (5%)

Query: 15  TSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVV 74
           ++ +  Y K G +  A+  F++MP ++VVS+ +ML    ++G ++ AR  F+ MPERN+V
Sbjct: 252 SALVDMYGKCGDLWMARRCFEMMPIKSVVSWTSMLCAQTKHGSVNAARCWFDHMPERNIV 311

Query: 75  SWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLI----RNGELNEARKVF--- 127
           SW AMI      G+  EA  L+ +M  + +      +V ++    R G+L   + V    
Sbjct: 312 SWNAMISCYVQRGQCHEALDLYNQMQSQGLAPDEITLVAVLSASGRIGDLTVGKMVHLYI 371

Query: 128 -NSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGY 186
            +++   +V   N+++  Y +C  +  AI LF EM  RNVV+W  +I G    G   +  
Sbjct: 372 RDNIYNPDVSLVNSLLDMYAKCGQVDTAISLFSEMCNRNVVSWNVIIGGLAMHGRALDTI 431

Query: 187 CLFRRMPRKNV----VSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMI 242
             FR M   +     +++ A++   +  G  +     F  M+ + +  +     +C  M+
Sbjct: 432 TFFRSMVTDSFAPDGITFVALLSACSHGGLLETGQHYFESMRHVYNVKHEVEHYAC--MV 489

Query: 243 NGYIRFGRLEEAQNLFDTVPVR-DEISWTSMI 273
           +   R G LE+A  L   +P++ D + W +++
Sbjct: 490 DLLGRRGHLEKAVCLIKEMPMKPDVVVWGALL 521



 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 74/272 (27%), Positives = 120/272 (44%), Gaps = 52/272 (19%)

Query: 7   PKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFE 66
           P   VV  TS +   +K G ++ A+  F  MP+RN+VS+NAM+S ++Q G+  EA  L+ 
Sbjct: 275 PIKSVVSWTSMLCAQTKHGSVNAARCWFDHMPERNIVSWNAMISCYVQRGQCHEALDLYN 334

Query: 67  EMPERN----------VVSWTAMICGL-----------------------------ADAG 87
           +M  +           V+S +  I  L                             A  G
Sbjct: 335 QMQSQGLAPDEITLVAVLSASGRIGDLTVGKMVHLYIRDNIYNPDVSLVNSLLDMYAKCG 394

Query: 88  RVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNV----ISWNAMIA 143
           +V  A  LF EM  RNVVSWN ++ GL  +G   +    F SM   +     I++ A+++
Sbjct: 395 QVDTAISLFSEMCNRNVVSWNVIIGGLAMHGRALDTITFFRSMVTDSFAPDGITFVALLS 454

Query: 144 GYVECCMMGEAIVLFEEME-----ERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRK-NV 197
                 ++      FE M      +  V  +  M+    R G +E+  CL + MP K +V
Sbjct: 455 ACSHGGLLETGQHYFESMRHVYNVKHEVEHYACMVDLLGRRGHLEKAVCLIKEMPMKPDV 514

Query: 198 VSWTAMIGGFAWNG---FHKESLLLFIEMKGI 226
           V W A++G    +G     ++ +   +E++GI
Sbjct: 515 VVWGALLGACRIHGNVKIGRQVIKQLLELEGI 546


>gi|147791533|emb|CAN68456.1| hypothetical protein VITISV_025676 [Vitis vinifera]
          Length = 768

 Score =  284 bits (726), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 161/451 (35%), Positives = 253/451 (56%), Gaps = 9/451 (1%)

Query: 153 EAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGF 212
           +A  +F  ++  ++V+WT +IS Y    +  + + +F  +    +   +  + G      
Sbjct: 306 DAQKVFNHIQNPDIVSWTCLISLYLHTSQPCKAFSIFSHLFHSGLRPDSFCVVGAVSACG 365

Query: 213 HKESLLLFIEMKGIC---DNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISW 269
           H++ L     + G+    + G++  V   N++I+ Y R G +E A ++F T+ ++D  SW
Sbjct: 366 HRKDLSNGRIVHGMVFRFELGSDPIVG--NALIDMYSRSGAIEVACSVFKTMEIKDVSSW 423

Query: 270 TSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGV- 328
           TS+++G++    +  A  +F  MP R++V+WTAMI+G VQ E+ +    LF EMRA G  
Sbjct: 424 TSLLNGFIKCNDIEAARRIFDEMPMRNSVSWTAMITGYVQGEVPIPGLELFQEMRAEGKD 483

Query: 329 -PPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAY 387
            P +    +VL G A   A  DLG  +H  + KT  + D+ + N L+ MYAK G +  A 
Sbjct: 484 WPTVITIVAVLSGCADIGA-FDLGSSVHGYVNKTNLDLDVTVNNALMDMYAKSGALVLAL 542

Query: 388 NIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAG 447
            IF  M  RD+ SW +M+ G + HG     L+ F  M +SG  PN VT L +LSACSHAG
Sbjct: 543 KIFQEMPKRDVFSWTTMISGLALHGKGTHALEAFSDMSKSGXXPNEVTLLSVLSACSHAG 602

Query: 448 LVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGAL 507
           LV  G  LF  M   + I+P  +HY  M++LLGRAG ++EA+E +  +P +PD  IW +L
Sbjct: 603 LVVEGRSLFQKMVQCHGIKPKIQHYGCMVDLLGRAGLLREAKELIEHMPIKPDSVIWRSL 662

Query: 508 LGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGV 567
           L AC    GN  +AE A K ++EL+P +   +++L NIY ++ R  +  K R  M  + V
Sbjct: 663 LSAC-LVHGNLALAEMAGKMIIELEPDDDGVYILLWNIYCSASRWEDALKARKAMRDRRV 721

Query: 568 RKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
           +K PGCSW+  NG +  FL+ D +    A++
Sbjct: 722 KKKPGCSWVEVNGVVHEFLAEDAVHCIRADV 752



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 93/379 (24%), Positives = 167/379 (44%), Gaps = 16/379 (4%)

Query: 48  MLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSW 107
           +L+ + Q G   +A+++F  +   ++VSWT +I       + C+A  +F  +    +   
Sbjct: 294 LLNTYTQLGSPVDAQKVFNHIQNPDIVSWTCLISLYLHTSQPCKAFSIFSHLFHSGLRPD 353

Query: 108 NSMVVGLI----RNGELNEAR----KVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFE 159
           +  VVG +       +L+  R     VF      + I  NA+I  Y     +  A  +F+
Sbjct: 354 SFCVVGAVSACGHRKDLSNGRIVHGMVFRFELGSDPIVGNALIDMYSRSGAIEVACSVFK 413

Query: 160 EMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLL 219
            ME ++V +WTS+++G+ +  ++E    +F  MP +N VSWTAMI G+         L L
Sbjct: 414 TMEIKDVSSWTSLLNGFIKCNDIEAARRIFDEMPMRNSVSWTAMITGYVQGEVPIPGLEL 473

Query: 220 FIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVR----DEISWTSMIDG 275
           F EM+   +  +   V +  ++++G    G  +   ++   V       D     +++D 
Sbjct: 474 FQEMRA--EGKDWPTVITIVAVLSGCADIGAFDLGSSVHGYVNKTNLDLDVTVNNALMDM 531

Query: 276 YLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATF 335
           Y   G +  A  +F  MP RD  +WT MISGL  +     A   F +M   G  P   T 
Sbjct: 532 YAKSGALVLALKIFQEMPKRDVFSWTTMISGLALHGKGTHALEAFSDMSKSGXXPNEVTL 591

Query: 336 SVLFGAAGATANIDLGRQIHCVLMKTESESDLILE-NCLISMYAKCGVIDNAYNIFSNM- 393
             +  A      +  GR +   +++       I    C++ +  + G++  A  +  +M 
Sbjct: 592 LSVLSACSHAGLVVEGRSLFQKMVQCHGIKPKIQHYGCMVDLLGRAGLLREAKELIEHMP 651

Query: 394 VSRDLVSWNSMVMGFSHHG 412
           +  D V W S++     HG
Sbjct: 652 IKPDSVIWRSLLSACLVHG 670



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 91/334 (27%), Positives = 162/334 (48%), Gaps = 27/334 (8%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEM------PER 71
           +  Y++ G   +A+ +F  +   ++VS+  ++S +L   +  +A  +F  +      P+ 
Sbjct: 295 LNTYTQLGSPVDAQKVFNHIQNPDIVSWTCLISLYLHTSQPCKAFSIFSHLFHSGLRPDS 354

Query: 72  NVVSWTAMICGLADA---GRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFN 128
             V      CG       GR+        E+    +V  N+++    R+G +  A  VF 
Sbjct: 355 FCVVGAVSACGHRKDLSNGRIVHGMVFRFELGSDPIVG-NALIDMYSRSGAIEVACSVFK 413

Query: 129 SMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVE-EGYC 187
           +M IK+V SW +++ G+++C  +  A  +F+EM  RN V+WT+MI+GY + GEV   G  
Sbjct: 414 TMEIKDVSSWTSLLNGFIKCNDIEAARRIFDEMPMRNSVSWTAMITGYVQ-GEVPIPGLE 472

Query: 188 LFRRMPRK-----NVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGN-NCNVQSCNSM 241
           LF+ M  +      V++  A++ G A  G    +  L   + G  +  N + +V   N++
Sbjct: 473 LFQEMRAEGKDWPTVITIVAVLSGCADIG----AFDLGSSVHGYVNKTNLDLDVTVNNAL 528

Query: 242 INGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDR----DA 297
           ++ Y + G L  A  +F  +P RD  SWT+MI G    G+ ++A   F +M       + 
Sbjct: 529 MDMYAKSGALVLALKIFQEMPKRDVFSWTTMISGLALHGKGTHALEAFSDMSKSGXXPNE 588

Query: 298 VAWTAMISGLVQNELFVEATYLFMEM-RAHGVPP 330
           V   +++S      L VE   LF +M + HG+ P
Sbjct: 589 VTLLSVLSACSHAGLVVEGRSLFQKMVQCHGIKP 622



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 85/299 (28%), Positives = 145/299 (48%), Gaps = 20/299 (6%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWT 77
           I  YS+ G I+ A ++F+ M  ++V S+ ++L+GF++   +  ARR+F+EMP RN VSWT
Sbjct: 396 IDMYSRSGAIEVACSVFKTMEIKDVSSWTSLLNGFIKCNDIEAARRIFDEMPMRNSVSWT 455

Query: 78  AMICGLADAGRVCEARKLFEEMPER-----NVVSWNSMVVGLIRNGELNEARKVFNSMPI 132
           AMI G           +LF+EM         V++  +++ G    G  +    V   +  
Sbjct: 456 AMITGYVQGEVPIPGLELFQEMRAEGKDWPTVITIVAVLSGCADIGAFDLGSSVHGYVNK 515

Query: 133 KN----VISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCL 188
            N    V   NA++  Y +   +  A+ +F+EM +R+V +WT+MISG    G+       
Sbjct: 516 TNLDLDVTVNNALMDMYAKSGALVLALKIFQEMPKRDVFSWTTMISGLALHGKGTHALEA 575

Query: 189 FRRMPRK----NVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMING 244
           F  M +     N V+  +++   +  G   E   LF +M  +  +G    +Q    M++ 
Sbjct: 576 FSDMSKSGXXPNEVTLLSVLSACSHAGLVVEGRSLFQKM--VQCHGIKPKIQHYGCMVDL 633

Query: 245 YIRFGRLEEAQNLFDTVPVR-DEISWTSMIDGYLSVGQVSNA----YYLFHNMPDRDAV 298
             R G L EA+ L + +P++ D + W S++   L  G ++ A      +    PD D V
Sbjct: 634 LGRAGLLREAKELIEHMPIKPDSVIWRSLLSACLVHGNLALAEMAGKMIIELEPDDDGV 692



 Score = 76.6 bits (187), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 49/188 (26%), Positives = 92/188 (48%), Gaps = 4/188 (2%)

Query: 272 MIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPL 331
           +++ Y  +G   +A  +F+++ + D V+WT +IS  +      +A  +F  +   G+ P 
Sbjct: 294 LLNTYTQLGSPVDAQKVFNHIQNPDIVSWTCLISLYLHTSQPCKAFSIFSHLFHSGLRPD 353

Query: 332 NATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFS 391
           +        A G   ++  GR +H ++ + E  SD I+ N LI MY++ G I+ A ++F 
Sbjct: 354 SFCVVGAVSACGHRKDLSNGRIVHGMVFRFELGSDPIVGNALIDMYSRSGAIEVACSVFK 413

Query: 392 NMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSR 451
            M  +D+ SW S++ GF          ++F+ M       NSV++  +++      +   
Sbjct: 414 TMEIKDVSSWTSLLNGFIKCNDIEAARRIFDEM----PMRNSVSWTAMITGYVQGEVPIP 469

Query: 452 GWELFNAM 459
           G ELF  M
Sbjct: 470 GLELFQEM 477


>gi|326528029|dbj|BAJ89066.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 639

 Score =  284 bits (726), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 171/557 (30%), Positives = 275/557 (49%), Gaps = 47/557 (8%)

Query: 41  NVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSW--TAMICGLADAGRVCEARKLFEE 98
           + ++ + ++S +    RL  +RR+F   P     ++    ++   A       A  LF  
Sbjct: 89  DPLAASKLISSYALQRRLPASRRIFASFPNPQATTFLPNTLLRAYALNALPHAAVSLFSA 148

Query: 99  MPERNVVSWNSMVVGLIRNGELNEARKVFNSM----PIKNVISWNAMIAGYVECCMMGEA 154
           MP+R+  +++ ++  L  +G L   R V + +     I++    NA+I  Y +     +A
Sbjct: 149 MPQRDSFTYSFLIKALSSSG-LTPLRAVHSHVVKLGSIEDTYVGNALIDAYSKNGGFLDA 207

Query: 155 IVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHK 214
             +FEEM  R+ V+W S ++   R GEV     +F  MP K+ VSW              
Sbjct: 208 SKVFEEMPRRDTVSWNSAMAAMVRQGEVASARRMFDEMPDKDTVSW-------------- 253

Query: 215 ESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMID 274
                                   N++++GY + G++E+A  LF  +P R+ +SW++++ 
Sbjct: 254 ------------------------NTVLDGYTKAGKMEDAFELFQCMPERNVVSWSTVVS 289

Query: 275 GYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNAT 334
           GY   G +  A  +F  MP ++ V WT M+S   QN L  EA  LF +M+   V    A 
Sbjct: 290 GYCKKGDIEMARVIFDKMPTKNLVTWTIMVSACAQNGLVEEAGRLFTQMKEAAVELDVAA 349

Query: 335 FSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIF-SNM 393
              +  A   + ++ LG++IH  +   +      + N +I M+ KCG ++ A  +F + +
Sbjct: 350 VVSILAACAESGSLALGKRIHRYVRTRQLGRSTHVCNAMIDMFCKCGCVNRADYVFDTEI 409

Query: 394 VSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGW 453
             +D VSWN+++ GF+ HG  ++ L  F  M   G  P++VT + +LSAC+H G V  G 
Sbjct: 410 AEKDSVSWNTIIGGFAMHGHGDKALDFFAQMKLQGFRPDAVTMINVLSACTHMGFVEEGR 469

Query: 454 ELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGF 513
           + F+ M   Y I P  EHY  MI+LLGR G I+EA   +  +P++P+  IWG+LL AC  
Sbjct: 470 QHFSNMERDYGIVPQIEHYGCMIDLLGRGGLIEEAVGLIKSMPWDPNEVIWGSLLSACRL 529

Query: 514 CEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGC 573
              N E AE A   L +L P NA  + VL NIYA +G+  +  K RM M   G +K  G 
Sbjct: 530 -HKNVEYAEIAVNELSKLQPSNAGNYAVLSNIYAEAGQWSDMAKARMQMKGTGSQKSAGS 588

Query: 574 SWLMRNGGIQMFLSGDK 590
           SW+  +     F  GD+
Sbjct: 589 SWIELDEAFHEFTVGDR 605



 Score =  190 bits (482), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 121/411 (29%), Positives = 210/411 (51%), Gaps = 17/411 (4%)

Query: 7   PKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFE 66
           P++      + +  Y+       A +LF  MPQR+  +Y+ ++     +G L+  R +  
Sbjct: 119 PQATTFLPNTLLRAYALNALPHAAVSLFSAMPQRDSFTYSFLIKALSSSG-LTPLRAVHS 177

Query: 67  EMPERNVVSWTAMICGLADA----GRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNE 122
            + +   +  T +   L DA    G   +A K+FEEMP R+ VSWNS +  ++R GE+  
Sbjct: 178 HVVKLGSIEDTYVGNALIDAYSKNGGFLDASKVFEEMPRRDTVSWNSAMAAMVRQGEVAS 237

Query: 123 ARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEV 182
           AR++F+ MP K+ +SWN ++ GY +   M +A  LF+ M ERNVV+W++++SGYC+ G++
Sbjct: 238 ARRMFDEMPDKDTVSWNTVLDGYTKAGKMEDAFELFQCMPERNVVSWSTVVSGYCKKGDI 297

Query: 183 EEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMI 242
           E    +F +MP KN+V+WT M+   A NG  +E+  LF +MK   +     +V +  S++
Sbjct: 298 EMARVIFDKMPTKNLVTWTIMVSACAQNGLVEEAGRLFTQMK---EAAVELDVAAVVSIL 354

Query: 243 NGYIRFGRLEEAQNLFDTVPVRDEISWT----SMIDGYLSVGQVSNAYYLFHN-MPDRDA 297
                 G L   + +   V  R     T    +MID +   G V+ A Y+F   + ++D+
Sbjct: 355 AACAESGSLALGKRIHRYVRTRQLGRSTHVCNAMIDMFCKCGCVNRADYVFDTEIAEKDS 414

Query: 298 VAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCV 357
           V+W  +I G   +    +A   F +M+  G  P   T   +  A      ++ GRQ H  
Sbjct: 415 VSWNTIIGGFAMHGHGDKALDFFAQMKLQGFRPDAVTMINVLSACTHMGFVEEGRQ-HFS 473

Query: 358 LMKTESESDLILEN--CLISMYAKCGVIDNAYNIFSNMV-SRDLVSWNSMV 405
            M+ +      +E+  C+I +  + G+I+ A  +  +M    + V W S++
Sbjct: 474 NMERDYGIVPQIEHYGCMIDLLGRGGLIEEAVGLIKSMPWDPNEVIWGSLL 524


>gi|413942600|gb|AFW75249.1| hypothetical protein ZEAMMB73_388642 [Zea mays]
          Length = 693

 Score =  284 bits (726), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 179/567 (31%), Positives = 290/567 (51%), Gaps = 29/567 (5%)

Query: 44  SYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLAD----AGRVCEARKLFEEM 99
           ++ A+L        L+  R +  ++  R + S +     LA+      R  +AR++F+ M
Sbjct: 18  TFTALLKLCAARADLATGRAVHAQLEARGLASESIASTALANMYFKCRRPADARRVFDRM 77

Query: 100 PERNVVSWNSMVVGLIRNGELNEARKVF------------NSMPIKNVISWNAMIAGYVE 147
           P R+ V+WN++V G  RNG  + A +              +S+ + +V+   A  A  + 
Sbjct: 78  PSRDRVAWNAVVAGYARNGLPSSAMEAVVRMQGEEGGERPDSVTLVSVLPACA-DARALH 136

Query: 148 CCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGF 207
            C    A  L   ++E   V+ T+++  YC+ G VE    +F  MP +N VSW AMI G+
Sbjct: 137 ACREVHAFALRAGLDELVNVS-TAVLDAYCKCGAVEAARAVFDCMPVRNSVSWNAMIDGY 195

Query: 208 AWNGFHKESLLLFIEMK----GICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPV 263
           A NG   E++ LF  M      + D      +Q+C  +  GY+    +     L   V +
Sbjct: 196 ADNGNATEAMALFWRMVQEGVDVTDASVLAALQACGEL--GYL--DEVRRVHELLVRVGL 251

Query: 264 RDEISWT-SMIDGYLSVGQVSNAYYLFHNMPDRDA-VAWTAMISGLVQNELFVEATYLFM 321
              +S T ++I  Y    +   A  +F+ + ++   ++W AMI G  QNE   +A  LF 
Sbjct: 252 SSNVSVTNALITTYAKCKRADLAAQVFNELGNKKTRISWNAMILGFTQNECPEDAERLFA 311

Query: 322 EMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCG 381
            M+   V P + T   +  A    ++    R IH   ++ + + D+ +   LI MY+KCG
Sbjct: 312 RMQLENVRPDSFTLVSVIPAVADISDPLQARWIHGYSIRHQLDQDVYVLTALIDMYSKCG 371

Query: 382 VIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILS 441
            +  A  +F +   R +++WN+M+ G+  HG     +++FE M  +G+ PN  TFL +L+
Sbjct: 372 RVSIARRLFDSARDRHVITWNAMIHGYGSHGFGQAAVELFEEMKGTGSLPNETTFLSVLA 431

Query: 442 ACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDH 501
           ACSHAGLV  G + F +M   Y ++PG EHY +M++LLGRAGK+ EA  F+  +P EP  
Sbjct: 432 ACSHAGLVDEGQKYFASMKKDYGLEPGMEHYGTMVDLLGRAGKLDEAWSFIKNMPIEPGI 491

Query: 502 RIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMD 561
            ++GA+LGAC     N E+AE +A+ + EL P     HV+L NIYA +    +  ++R  
Sbjct: 492 SVYGAMLGACKL-HKNVELAEESAQIIFELGPEEGVYHVLLANIYANASMWKDVARVRTA 550

Query: 562 MGLKGVRKVPGCSWLMRNGGIQMFLSG 588
           M  KG++K PG S +     +  F SG
Sbjct: 551 MEKKGLQKTPGWSIIQLKNEVHTFYSG 577



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 138/539 (25%), Positives = 222/539 (41%), Gaps = 91/539 (16%)

Query: 29  EAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEA-----RRLFEEMPER-NVVSWTAMICG 82
           +A+ +F  MP R+ V++NA+++G+ +NG  S A     R   EE  ER + V+  +++  
Sbjct: 69  DARRVFDRMPSRDRVAWNAVVAGYARNGLPSSAMEAVVRMQGEEGGERPDSVTLVSVLPA 128

Query: 83  LADAG-----RVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVIS 137
            ADA      R   A  L   + E   VS  +++    + G +  AR VF+ MP++N +S
Sbjct: 129 CADARALHACREVHAFALRAGLDELVNVS-TAVLDAYCKCGAVEAARAVFDCMPVRNSVS 187

Query: 138 WNAMIAGYVECCMMGEAIVLFEEMEERNV-VTWTSMISGYCRAGEVEEGY---------C 187
           WNAMI GY +     EA+ LF  M +  V VT  S+++     GE+  GY          
Sbjct: 188 WNAMIDGYADNGNATEAMALFWRMVQEGVDVTDASVLAALQACGEL--GYLDEVRRVHEL 245

Query: 188 LFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIR 247
           L R     NV    A+I  +A       +  +F E+      GN     S N+MI G+ +
Sbjct: 246 LVRVGLSSNVSVTNALITTYAKCKRADLAAQVFNEL------GNKKTRISWNAMILGFTQ 299

Query: 248 FGRLEEAQNLF----------------DTVPVRDEIS------W---------------- 269
               E+A+ LF                  +P   +IS      W                
Sbjct: 300 NECPEDAERLFARMQLENVRPDSFTLVSVIPAVADISDPLQARWIHGYSIRHQLDQDVYV 359

Query: 270 -TSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGV 328
            T++ID Y   G+VS A  LF +  DR  + W AMI G   +     A  LF EM+  G 
Sbjct: 360 LTALIDMYSKCGRVSIARRLFDSARDRHVITWNAMIHGYGSHGFGQAAVELFEEMKGTGS 419

Query: 329 PPLNATFSVLFGAAGATANIDLGRQIHCVLMKTES-ESDLILENCLISMYAKCGVIDNAY 387
            P   TF  +  A      +D G++    + K    E  +     ++ +  + G +D A+
Sbjct: 420 LPNETTFLSVLAACSHAGLVDEGQKYFASMKKDYGLEPGMEHYGTMVDLLGRAGKLDEAW 479

Query: 388 NIFSNM-VSRDLVSWNSMVMGFSHHG---LANETLK-VFESMLESGTHPNSVTFLGILSA 442
           +   NM +   +  + +M+     H    LA E+ + +FE   E G +   V    I + 
Sbjct: 480 SFIKNMPIEPGISVYGAMLGACKLHKNVELAEESAQIIFELGPEEGVY--HVLLANIYAN 537

Query: 443 CSHAGLVSR--------------GWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKE 487
            S    V+R              GW +     +V+    G  ++    ++  R  K+ E
Sbjct: 538 ASMWKDVARVRTAMEKKGLQKTPGWSIIQLKNEVHTFYSGSTNHQHAKDIYARLAKLIE 596



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 111/442 (25%), Positives = 192/442 (43%), Gaps = 71/442 (16%)

Query: 15  TSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNV- 73
           T+ +  Y K G ++ A+A+F  MP RN VS+NAM+ G+  NG  +EA  LF  M +  V 
Sbjct: 158 TAVLDAYCKCGAVEAARAVFDCMPVRNSVSWNAMIDGYADNGNATEAMALFWRMVQEGVD 217

Query: 74  ---VSWTAMICGLADAGRVCEARKLFEEMPE----RNVVSWNSMVVGLIRNGELNEARKV 126
               S  A +    + G + E R++ E +       NV   N+++    +    + A +V
Sbjct: 218 VTDASVLAALQACGELGYLDEVRRVHELLVRVGLSSNVSVTNALITTYAKCKRADLAAQV 277

Query: 127 FNSMPIKNV-ISWNAMIAGYVECCMMGEAIVLFEEME----------------------- 162
           FN +  K   ISWNAMI G+ +     +A  LF  M+                       
Sbjct: 278 FNELGNKKTRISWNAMILGFTQNECPEDAERLFARMQLENVRPDSFTLVSVIPAVADISD 337

Query: 163 ----------------ERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGG 206
                           +++V   T++I  Y + G V     LF     ++V++W AMI G
Sbjct: 338 PLQARWIHGYSIRHQLDQDVYVLTALIDMYSKCGRVSIARRLFDSARDRHVITWNAMIHG 397

Query: 207 FAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDE 266
           +  +GF + ++ LF EMKG    G+  N  +  S++      G ++E Q  F ++     
Sbjct: 398 YGSHGFGQAAVELFEEMKG---TGSLPNETTFLSVLAACSHAGLVDEGQKYFASMKKDYG 454

Query: 267 IS-----WTSMIDGYLSVGQVSNAYYLFHNMPDRDAVA-WTAMISG--LVQN-ELFVEAT 317
           +      + +M+D     G++  A+    NMP    ++ + AM+    L +N EL  E+ 
Sbjct: 455 LEPGMEHYGTMVDLLGRAGKLDEAWSFIKNMPIEPGISVYGAMLGACKLHKNVELAEESA 514

Query: 318 YLFMEMRAHGVPPLNATFSVLFGAAGATANI--DLGRQIHCV----LMKTESESDLILEN 371
            +  E+      P    + VL     A A++  D+ R    +    L KT   S + L+N
Sbjct: 515 QIIFEL-----GPEEGVYHVLLANIYANASMWKDVARVRTAMEKKGLQKTPGWSIIQLKN 569

Query: 372 CLISMYAKCGVIDNAYNIFSNM 393
            + + Y+      +A +I++ +
Sbjct: 570 EVHTFYSGSTNHQHAKDIYARL 591



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 41/119 (34%), Positives = 63/119 (52%), Gaps = 2/119 (1%)

Query: 330 PLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNI 389
           P+  TF+ L     A A++  GR +H  L      S+ I    L +MY KC    +A  +
Sbjct: 14  PVLRTFTALLKLCAARADLATGRAVHAQLEARGLASESIASTALANMYFKCRRPADARRV 73

Query: 390 FSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESML--ESGTHPNSVTFLGILSACSHA 446
           F  M SRD V+WN++V G++ +GL +  ++    M   E G  P+SVT + +L AC+ A
Sbjct: 74  FDRMPSRDRVAWNAVVAGYARNGLPSSAMEAVVRMQGEEGGERPDSVTLVSVLPACADA 132



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 54/169 (31%), Positives = 84/169 (49%), Gaps = 14/169 (8%)

Query: 2   SERNHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEA 61
           S R+     V  LT+ I  YSK G +  A+ LF     R+V+++NAM+ G+  +G    A
Sbjct: 348 SIRHQLDQDVYVLTALIDMYSKCGRVSIARRLFDSARDRHVITWNAMIHGYGSHGFGQAA 407

Query: 62  RRLFEEMPER----NVVSWTAMICGLADAGRVCEARKLFEEMP-----ERNVVSWNSMVV 112
             LFEEM       N  ++ +++   + AG V E +K F  M      E  +  + +MV 
Sbjct: 408 VELFEEMKGTGSLPNETTFLSVLAACSHAGLVDEGQKYFASMKKDYGLEPGMEHYGTMVD 467

Query: 113 GLIRNGELNEARKVFNSMPIKNVIS-WNAMIAGYVECCMMGEAIVLFEE 160
            L R G+L+EA     +MPI+  IS + AM+      C + + + L EE
Sbjct: 468 LLGRAGKLDEAWSFIKNMPIEPGISVYGAMLGA----CKLHKNVELAEE 512


>gi|357126882|ref|XP_003565116.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g13880-like [Brachypodium distachyon]
          Length = 796

 Score =  284 bits (726), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 197/666 (29%), Positives = 322/666 (48%), Gaps = 75/666 (11%)

Query: 4   RNHPKSLVVHLTSSITKYSKRGFID--EAKALFQLMPQRNVVSYNAMLSGFLQNGRLSE- 60
           R HP   +    + +  Y + G  D  +A+ L   MP+RN VS+N ++  + + G+  E 
Sbjct: 38  RAHPSPSLFLRNTLLAAYCRLGAGDTHQARRLLDEMPRRNAVSFNLLIDAYSRAGQTEES 97

Query: 61  ------ARRLFEEMPERNVVSWTAMIC---GLADAGRVCEARKLFEEMPERNVVSWNSMV 111
                 A R  E   +R   +     C   G    G+V  A  + E + E   VS NS+V
Sbjct: 98  LETFLHAHRAAEVKADRFTYAAALAACSRAGRLKEGKVVHALAVLEGLAEGVFVS-NSLV 156

Query: 112 VGLIRNGELNEARKVFNSMPIKNVISWNAMIAGY-------------------------- 145
               R G++ EAR+VF+    ++ +SWN++++GY                          
Sbjct: 157 SMYARCGDMGEARRVFDVTEERDDVSWNSLVSGYLRVGAHEEMLRVFALMRRCAMGLNSF 216

Query: 146 -----VECCMMGEAIV----------LFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFR 190
                ++CC  G+  V          + +   + ++   ++M+  Y + G + E   LF+
Sbjct: 217 ALGSVIKCCSGGDGSVRGIAEAVHGCVVKAGLDTDLFLASAMVDMYAKRGALSEAVALFK 276

Query: 191 RMPRKNVVSWTAMIGGFAWN--GFHKE----SLLLFIEMKG----ICDNGNNCNVQSCNS 240
            +   NVV + AMI G   +    HKE    +L L+ E++       +   +  +++CN 
Sbjct: 277 SVLDPNVVVFNAMIAGLCRDEAAVHKEVVREALSLYSELQSRGMEPTEFTFSSVIRACN- 335

Query: 241 MINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAW 300
            + G I FG+    Q L       D I  +++ID Y +   + + +  F ++P +D V W
Sbjct: 336 -LAGDIEFGKQIHGQVLKHCFQGDDFIG-SALIDLYFNSACMEDGFRCFRSVPKQDVVTW 393

Query: 301 TAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMK 360
           TAMISG VQNELF  A  LF E+   G+ P   T S +  A  + A +  G Q+ C   K
Sbjct: 394 TAMISGCVQNELFERALALFHELLGVGLKPDPFTISSVMNACASLAVVRTGEQMQCFATK 453

Query: 361 TESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKV 420
           +  +    + N  I MYA+ G ++ A   F  M S D+VSW++++   + HG A + L+ 
Sbjct: 454 SGFDRFTAMGNSCIHMYARSGNVEAAIQRFQEMESHDVVSWSAIISSHAQHGCARQALQF 513

Query: 421 FESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLG 480
           F  M+ +   PN +TFLG+L+ACSH GLV  G   +  M   Y + P  +H   +++LLG
Sbjct: 514 FNEMVGAKVVPNEITFLGVLTACSHGGLVDEGLRYYEIMKMEYGLCPTVKHCTCVVDLLG 573

Query: 481 RAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHV 540
           RAG++ +AE F+    F  +  +W +LLG+C     + E  +  A R++EL P ++  +V
Sbjct: 574 RAGRLADAEAFIRDSIFHDEPVVWQSLLGSCRI-HRDMERGQLVADRIMELQPASSGCYV 632

Query: 541 VLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDK-------IPA 593
            L N+Y  +G      K+R  M  +GV+K PG SW+    GI  F++GDK       I  
Sbjct: 633 NLYNMYLDAGELSLGSKIRDLMKERGVKKEPGLSWIELRSGIHSFVAGDKSHPECNAIYT 692

Query: 594 QVAEIL 599
           ++AE+L
Sbjct: 693 KLAEML 698


>gi|115434844|ref|NP_001042180.1| Os01g0176300 [Oryza sativa Japonica Group]
 gi|11034538|dbj|BAB17062.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|113531711|dbj|BAF04094.1| Os01g0176300 [Oryza sativa Japonica Group]
 gi|125569234|gb|EAZ10749.1| hypothetical protein OsJ_00586 [Oryza sativa Japonica Group]
          Length = 665

 Score =  284 bits (726), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 155/425 (36%), Positives = 246/425 (57%), Gaps = 2/425 (0%)

Query: 167 VTWTSMISGYCRAGEVEEGYCLFRRMPRKNVV-SWTAMIGGFAWNGFHKESLLLFIEMKG 225
           V W ++ISG+ R+G  E   C F  M R + + +    +   +  G  K+ LL     K 
Sbjct: 127 VMWNALISGHNRSGRFELSCCSFVDMVRASAMATAVTYVSVLSACGKGKDLLLGMQVHKR 186

Query: 226 ICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNA 285
           + ++G   + +  N++++ Y   G ++ A  LF+ + +R   SWTS+I G +  GQV  A
Sbjct: 187 VLESGVLPDQRVENALVDMYAECGDMDAAWVLFEGMQMRSMASWTSVISGLVRSGQVDRA 246

Query: 286 YYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGAT 345
             LF +MP+RD +AWTAMI G VQ   F +A   F  M+   V     T   +  A    
Sbjct: 247 RDLFDHMPERDTIAWTAMIDGYVQVGRFRDALETFRYMQICKVRADEFTMVSVVTACAQL 306

Query: 346 ANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMV 405
             ++ G      + +   + D+ + N LI MY+KCG I+ A ++F +M +RD  +W +++
Sbjct: 307 GALETGEWARIYMGRLGIKMDVFVGNALIDMYSKCGSIERALDVFKDMHNRDKFTWTAII 366

Query: 406 MGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKI 465
           +G + +G   E + +F  ML +   P+ VTF+G+L+AC+HAGLV +G E F +M + Y I
Sbjct: 367 LGLAVNGRGEEAIDMFYRMLRALQTPDEVTFVGVLTACTHAGLVDKGREFFLSMTEAYNI 426

Query: 466 QPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAA 525
            P   HY  +I++LGRAGK+KEA + + ++P +P+  IWG LL +C    GN+EI E AA
Sbjct: 427 SPTVVHYGCLIDVLGRAGKLKEALDTIDKMPMKPNSTIWGTLLASCRV-YGNSEIGELAA 485

Query: 526 KRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMF 585
           +RLLELDP N+ A+++L N+YA S R  +  ++R  +  KG++K PGCS +  NG I  F
Sbjct: 486 ERLLELDPDNSTAYILLSNMYAKSNRWKDVRRIRQIIMEKGIKKEPGCSMIEMNGIIHEF 545

Query: 586 LSGDK 590
           ++ D+
Sbjct: 546 VAADR 550



 Score =  117 bits (292), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 91/333 (27%), Positives = 152/333 (45%), Gaps = 16/333 (4%)

Query: 74  VSWTAMICGLADAGRV----CEARKLFEEMPERNVVSWNSMVVGLIRNGEL----NEARK 125
           V W A+I G   +GR     C    +         V++ S++    +  +L       ++
Sbjct: 127 VMWNALISGHNRSGRFELSCCSFVDMVRASAMATAVTYVSVLSACGKGKDLLLGMQVHKR 186

Query: 126 VFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEG 185
           V  S  + +    NA++  Y EC  M  A VLFE M+ R++ +WTS+ISG  R+G+V+  
Sbjct: 187 VLESGVLPDQRVENALVDMYAECGDMDAAWVLFEGMQMRSMASWTSVISGLVRSGQVDRA 246

Query: 186 YCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGY 245
             LF  MP ++ ++WTAMI G+   G  +++L  F  M+ IC      +  +  S++   
Sbjct: 247 RDLFDHMPERDTIAWTAMIDGYVQVGRFRDALETFRYMQ-ICK--VRADEFTMVSVVTAC 303

Query: 246 IRFGRLEE---AQNLFDTVPVR-DEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWT 301
            + G LE    A+     + ++ D     ++ID Y   G +  A  +F +M +RD   WT
Sbjct: 304 AQLGALETGEWARIYMGRLGIKMDVFVGNALIDMYSKCGSIERALDVFKDMHNRDKFTWT 363

Query: 302 AMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKT 361
           A+I GL  N    EA  +F  M      P   TF  +  A      +D GR+    + + 
Sbjct: 364 AIILGLAVNGRGEEAIDMFYRMLRALQTPDEVTFVGVLTACTHAGLVDKGREFFLSMTEA 423

Query: 362 ESESDLILE-NCLISMYAKCGVIDNAYNIFSNM 393
            + S  ++   CLI +  + G +  A +    M
Sbjct: 424 YNISPTVVHYGCLIDVLGRAGKLKEALDTIDKM 456



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 74/259 (28%), Positives = 129/259 (49%), Gaps = 14/259 (5%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWT 77
           +  Y++ G +D A  LF+ M  R++ S+ +++SG +++G++  AR LF+ MPER+ ++WT
Sbjct: 203 VDMYAECGDMDAAWVLFEGMQMRSMASWTSVISGLVRSGQVDRARDLFDHMPERDTIAWT 262

Query: 78  AMICGLADAGRVCEARKLFEEMP----ERNVVSWNSMVVGLIRNGELNE---ARKVFNSM 130
           AMI G    GR  +A + F  M       +  +  S+V    + G L     AR     +
Sbjct: 263 AMIDGYVQVGRFRDALETFRYMQICKVRADEFTMVSVVTACAQLGALETGEWARIYMGRL 322

Query: 131 PIK-NVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLF 189
            IK +V   NA+I  Y +C  +  A+ +F++M  R+  TWT++I G    G  EE   +F
Sbjct: 323 GIKMDVFVGNALIDMYSKCGSIERALDVFKDMHNRDKFTWTAIILGLAVNGRGEEAIDMF 382

Query: 190 RRMPRK----NVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGY 245
            RM R     + V++  ++      G   +    F+ M    +         C  +I+  
Sbjct: 383 YRMLRALQTPDEVTFVGVLTACTHAGLVDKGREFFLSMTEAYNISPTVVHYGC--LIDVL 440

Query: 246 IRFGRLEEAQNLFDTVPVR 264
            R G+L+EA +  D +P++
Sbjct: 441 GRAGKLKEALDTIDKMPMK 459



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 74/288 (25%), Positives = 134/288 (46%), Gaps = 27/288 (9%)

Query: 36  LMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKL 95
           ++P + V   NA++  + + G +  A  LFE M  R++ SWT++I GL  +G+V  AR L
Sbjct: 192 VLPDQRV--ENALVDMYAECGDMDAAWVLFEGMQMRSMASWTSVISGLVRSGQVDRARDL 249

Query: 96  FEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAI 155
           F+ MPER+ ++W +M+ G ++ G   +A + F  M I  V +    +   V  C    A+
Sbjct: 250 FDHMPERDTIAWTAMIDGYVQVGRFRDALETFRYMQICKVRADEFTMVSVVTACAQLGAL 309

Query: 156 VLFEEME--------ERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGF 207
              E           + +V    ++I  Y + G +E    +F+ M  ++  +WTA+I G 
Sbjct: 310 ETGEWARIYMGRLGIKMDVFVGNALIDMYSKCGSIERALDVFKDMHNRDKFTWTAIILGL 369

Query: 208 AWNGFHKESLLLFIEMKGICDNGNNCN----VQSCNSMINGYIRFGR-----LEEAQNLF 258
           A NG  +E++ +F  M       +       + +C     G +  GR     + EA N+ 
Sbjct: 370 AVNGRGEEAIDMFYRMLRALQTPDEVTFVGVLTACTHA--GLVDKGREFFLSMTEAYNIS 427

Query: 259 DTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDR-DAVAWTAMIS 305
            TV     + +  +ID     G++  A      MP + ++  W  +++
Sbjct: 428 PTV-----VHYGCLIDVLGRAGKLKEALDTIDKMPMKPNSTIWGTLLA 470


>gi|168045266|ref|XP_001775099.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162673550|gb|EDQ60071.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 804

 Score =  284 bits (726), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 194/640 (30%), Positives = 312/640 (48%), Gaps = 58/640 (9%)

Query: 12  VHLTSSITK-YSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPE 70
           V++T+++ K Y+  G ++EA+ LF     ++VVS+N M+SG+   G   EA  LF  M +
Sbjct: 63  VYITNTLLKLYAHCGSVNEARQLFDKFSNKSVVSWNVMISGYAHRGLAQEAFNLFTLMQQ 122

Query: 71  RN-------------------VVSW--------------------TAMICGLADAGRVCE 91
                                V++W                     A+I   A  G V +
Sbjct: 123 ERLEPDKFTFVSILSACSSPAVLNWGREIHVRVMEAGLANDTTVGNALISMYAKCGSVRD 182

Query: 92  ARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSM------PIK----NVISWNAM 141
           AR++F+ M  R+ VSW ++      +G   E+ K +++M      P +    NV+S    
Sbjct: 183 ARRVFDAMASRDEVSWTTLTGAYAESGYGEESLKTYHAMLQERVRPSRITYMNVLSACGS 242

Query: 142 IAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWT 201
           +A   +   +   IV  E     +V   T++   Y + G  ++   +F  +  ++V++W 
Sbjct: 243 LAALEKGKQIHAHIV--ESEYHSDVRVSTALTKMYMKCGAFKDAREVFECLSYRDVIAWN 300

Query: 202 AMIGGFAWNGFHKESLLLFIEM--KGIC-DNGNNCNVQSCNSMINGYIRFGRLEEAQNLF 258
            MI GF  +G  +E+   F  M  +G+  D      V S  +   G  R G+   A+   
Sbjct: 301 TMIRGFVDSGQLEEAHGTFHRMLEEGVAPDRATYTTVLSACARPGGLAR-GKEIHARAAK 359

Query: 259 DTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATY 318
           D + V D     ++I+ Y   G + +A  +F  MP RD V+WT ++      +  VE+  
Sbjct: 360 DGL-VSDVRFGNALINMYSKAGSMKDARQVFDRMPKRDVVSWTTLLGRYADCDQVVESFT 418

Query: 319 LFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYA 378
            F +M   GV     T+  +  A      +  G++IH  ++K    +DL + N L+SMY 
Sbjct: 419 TFKQMLQQGVKANKITYMCVLKACSNPVALKWGKEIHAEVVKAGLLADLAVTNALMSMYF 478

Query: 379 KCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLG 438
           KCG +++A  +F  M  RD+V+WN+++ G   +G   E L+ +E M   G  PN+ TF+ 
Sbjct: 479 KCGSVEDAIRVFEGMSMRDVVTWNTLIGGLGQNGRGLEALQRYEVMKSEGMRPNAATFVN 538

Query: 439 ILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFE 498
           +LSAC    LV  G   F  M   Y I P  +HY  M+++L RAG ++EAE+ +L +P +
Sbjct: 539 VLSACRVCNLVEEGRRQFAFMSKDYGIVPTEKHYACMVDILARAGHLREAEDVILTIPLK 598

Query: 499 PDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKL 558
           P   +WGALL AC     N EI E AA+  L+L+P NA  +V L  IYAA+G   +  KL
Sbjct: 599 PSAAMWGALLAACRI-HCNVEIGERAAEHCLKLEPQNAGLYVSLSAIYAAAGMWRDVAKL 657

Query: 559 RMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
           R  M  +GV+K PG SW+   G +  F++ D+   +  EI
Sbjct: 658 RKFMKERGVKKEPGRSWIEIAGEVHSFVARDQSHPRTQEI 697



 Score =  159 bits (402), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 111/392 (28%), Positives = 186/392 (47%), Gaps = 52/392 (13%)

Query: 134 NVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMP 193
           NV   N ++  Y  C  + EA  LF++   ++VV+W  MISGY   G  +E + LF  M 
Sbjct: 62  NVYITNTLLKLYAHCGSVNEARQLFDKFSNKSVVSWNVMISGYAHRGLAQEAFNLFTLMQ 121

Query: 194 RKNV-------VSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYI 246
           ++ +       VS  +     A   + +E  +  +E  G+    N+  V   N++I+ Y 
Sbjct: 122 QERLEPDKFTFVSILSACSSPAVLNWGREIHVRVMEA-GL---ANDTTVG--NALISMYA 175

Query: 247 RFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISG 306
           + G + +A+ +FD +  RDE+SWT++   Y   G    +   +H M              
Sbjct: 176 KCGSVRDARRVFDAMASRDEVSWTTLTGAYAESGYGEESLKTYHAM-------------- 221

Query: 307 LVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESD 366
                         ++ R   V P   T+  +  A G+ A ++ G+QIH  ++++E  SD
Sbjct: 222 --------------LQER---VRPSRITYMNVLSACGSLAALEKGKQIHAHIVESEYHSD 264

Query: 367 LILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLE 426
           + +   L  MY KCG   +A  +F  +  RD+++WN+M+ GF   G   E    F  MLE
Sbjct: 265 VRVSTALTKMYMKCGAFKDAREVFECLSYRDVIAWNTMIRGFVDSGQLEEAHGTFHRMLE 324

Query: 427 SGTHPNSVTFLGILSACSHAGLVSRGWELF-NAMFD--VYKIQPGPEHYVSMINLLGRAG 483
            G  P+  T+  +LSAC+  G ++RG E+   A  D  V  ++ G     ++IN+  +AG
Sbjct: 325 EGVAPDRATYTTVLSACARPGGLARGKEIHARAAKDGLVSDVRFGN----ALINMYSKAG 380

Query: 484 KIKEAEEFVLRLPFEPDHRIWGALLGACGFCE 515
            +K+A +   R+P + D   W  LLG    C+
Sbjct: 381 SMKDARQVFDRMP-KRDVVSWTTLLGRYADCD 411



 Score =  159 bits (401), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 107/427 (25%), Positives = 198/427 (46%), Gaps = 46/427 (10%)

Query: 41  NVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLF---- 96
           NV   N +L  +   G ++EAR+LF++   ++VVSW  MI G A  G   EA  LF    
Sbjct: 62  NVYITNTLLKLYAHCGSVNEARQLFDKFSNKSVVSWNVMISGYAHRGLAQEAFNLFTLMQ 121

Query: 97  EEMPERNVVSWNSMVVGLIRNGELNEAR----KVFNSMPIKNVISWNAMIAGYVECCMMG 152
           +E  E +  ++ S++        LN  R    +V  +    +    NA+I+ Y +C  + 
Sbjct: 122 QERLEPDKFTFVSILSACSSPAVLNWGREIHVRVMEAGLANDTTVGNALISMYAKCGSVR 181

Query: 153 EAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNV----VSWTAMIGGFA 208
           +A  +F+ M  R+ V+WT++   Y  +G  EE    +  M ++ V    +++  ++    
Sbjct: 182 DARRVFDAMASRDEVSWTTLTGAYAESGYGEESLKTYHAMLQERVRPSRITYMNVLSACG 241

Query: 209 WNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEIS 268
                ++   +      I ++  + +V+   ++   Y++ G  ++A+ +F+ +  RD I+
Sbjct: 242 SLAALEKGKQIHAH---IVESEYHSDVRVSTALTKMYMKCGAFKDAREVFECLSYRDVIA 298

Query: 269 WTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGV 328
           W +MI G++  GQ+  A+  FH M +                                GV
Sbjct: 299 WNTMIRGFVDSGQLEEAHGTFHRMLE-------------------------------EGV 327

Query: 329 PPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYN 388
            P  AT++ +  A      +  G++IH    K    SD+   N LI+MY+K G + +A  
Sbjct: 328 APDRATYTTVLSACARPGGLARGKEIHARAAKDGLVSDVRFGNALINMYSKAGSMKDARQ 387

Query: 389 IFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGL 448
           +F  M  RD+VSW +++  ++      E+   F+ ML+ G   N +T++ +L ACS+   
Sbjct: 388 VFDRMPKRDVVSWTTLLGRYADCDQVVESFTTFKQMLQQGVKANKITYMCVLKACSNPVA 447

Query: 449 VSRGWEL 455
           +  G E+
Sbjct: 448 LKWGKEI 454



 Score = 85.9 bits (211), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 88/168 (52%), Gaps = 10/168 (5%)

Query: 347 NIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVM 406
           ++ +G+Q+H  +++   + ++ + N L+ +YA CG ++ A  +F    ++ +VSWN M+ 
Sbjct: 43  DLAVGKQVHEHILRCGVKPNVYITNTLLKLYAHCGSVNEARQLFDKFSNKSVVSWNVMIS 102

Query: 407 GFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQ 466
           G++H GLA E   +F  M +    P+  TF+ ILSACS   +++ G E+      V  ++
Sbjct: 103 GYAHRGLAQEAFNLFTLMQQERLEPDKFTFVSILSACSSPAVLNWGREIH-----VRVME 157

Query: 467 PGPEHYVS----MINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGA 510
            G  +  +    +I++  + G +++A   V       D   W  L GA
Sbjct: 158 AGLANDTTVGNALISMYAKCGSVRDARR-VFDAMASRDEVSWTTLTGA 204


>gi|345505226|gb|AEN99837.1| chlororespiratory reduction 4, partial [Lobularia maritima]
          Length = 570

 Score =  284 bits (726), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 157/453 (34%), Positives = 248/453 (54%), Gaps = 13/453 (2%)

Query: 139 NAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPR--KN 196
           N +I  Y++C  +G A  +F+ M +R+ V++ SMI GY + G +E    LF  MP+  KN
Sbjct: 124 NCLIGLYIKCSCLGYARQVFDRMPQRDSVSYNSMIDGYVKCGLIESARELFDLMPKEKKN 183

Query: 197 VVSWTAMIGGFAW--NGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEA 254
           ++SW +MIGG+A   +G    S L F EM          ++ S NS+I+GY++ GR+E+A
Sbjct: 184 LISWNSMIGGYAQREDGVDIASKL-FAEMP-------EKDLISWNSLIDGYVKHGRIEDA 235

Query: 255 QNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFV 314
           + LFD +P RD ++W +MIDGY  +G V  A  LF  MP RD VA+ +M+ G VQN+  +
Sbjct: 236 KGLFDVMPRRDVVTWATMIDGYAKLGFVHKAKSLFDVMPHRDVVAYNSMMGGYVQNKYHM 295

Query: 315 EATYLFMEMRAHG-VPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCL 373
           EA  +F +M     + P   T  ++  A      +     IH  +++     D  L   L
Sbjct: 296 EALEVFYDMEKESHLSPDETTLVIVLSAIAQLGRLSKAVDIHLYIVEKRFLLDGKLGVAL 355

Query: 374 ISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNS 433
           I MY+KCG I  A  +F  + ++ +  WN+M+ G + HGL      +   + +    P+ 
Sbjct: 356 IDMYSKCGSIQQAMAVFEGIENKSIDHWNAMIGGLAVHGLGEAAFDMLMEIEKRFIKPDY 415

Query: 434 VTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVL 493
           +TF+G+L+ACSH+GLV  G   F  M   +KI+P  +HY  M++LL R+G I+ A+  + 
Sbjct: 416 ITFVGVLNACSHSGLVKEGLLCFELMRRKHKIEPRLQHYGCMVDLLARSGSIELAKHLIS 475

Query: 494 RLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHV 553
            +P EP+  IW   L AC   +         A+ L+     N  ++V+L N+YA+     
Sbjct: 476 EMPIEPNDVIWRTFLNACSHHKEFETRELVVAENLILQAGYNPSSYVLLSNMYASFEMWE 535

Query: 554 EEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFL 586
           +  ++R  M  + + KVPGCSW+  +G +  FL
Sbjct: 536 DVRRVRTMMKERKIEKVPGCSWIELDGKVHEFL 568



 Score =  187 bits (474), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 131/445 (29%), Positives = 236/445 (53%), Gaps = 22/445 (4%)

Query: 16  SSITKYSKR-GFIDEAKALFQLMPQRNVVS----YNAMLSGFLQNGRLSEARRLFEEMPE 70
           S +TK   R GF  E   +   + +  + S     N ++  +++   L  AR++F+ MP+
Sbjct: 89  SLVTKACSRLGFAKEGMQIHGFLTKTVICSDLFLQNCLIGLYIKCSCLGYARQVFDRMPQ 148

Query: 71  RNVVSWTAMICGLADAGRVCEARKLFEEMP--ERNVVSWNSMVVGLI-RNGELNEARKVF 127
           R+ VS+ +MI G    G +  AR+LF+ MP  ++N++SWNSM+ G   R   ++ A K+F
Sbjct: 149 RDSVSYNSMIDGYVKCGLIESARELFDLMPKEKKNLISWNSMIGGYAQREDGVDIASKLF 208

Query: 128 NSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYC 187
             MP K++ISWN++I GYV+   + +A  LF+ M  R+VVTW +MI GY + G V +   
Sbjct: 209 AEMPEKDLISWNSLIDGYVKHGRIEDAKGLFDVMPRRDVVTWATMIDGYAKLGFVHKAKS 268

Query: 188 LFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIR 247
           LF  MP ++VV++ +M+GG+  N +H E+L +F +M+   ++  + +  +   +++   +
Sbjct: 269 LFDVMPHRDVVAYNSMMGGYVQNKYHMEALEVFYDMEK--ESHLSPDETTLVIVLSAIAQ 326

Query: 248 FGRLEEAQNLFDTVPVR----DEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAM 303
            GRL +A ++   +  +    D     ++ID Y   G +  A  +F  + ++    W AM
Sbjct: 327 LGRLSKAVDIHLYIVEKRFLLDGKLGVALIDMYSKCGSIQQAMAVFEGIENKSIDHWNAM 386

Query: 304 ISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCV-LMKTE 362
           I GL  + L   A  + ME+    + P   TF  +  A   +  +  G  + C  LM+ +
Sbjct: 387 IGGLAVHGLGEAAFDMLMEIEKRFIKPDYITFVGVLNACSHSGLVKEG--LLCFELMRRK 444

Query: 363 SESDLILEN--CLISMYAKCGVIDNAYNIFSNM-VSRDLVSWNSMVMGFSHHG-LANETL 418
            + +  L++  C++ + A+ G I+ A ++ S M +  + V W + +   SHH       L
Sbjct: 445 HKIEPRLQHYGCMVDLLARSGSIELAKHLISEMPIEPNDVIWRTFLNACSHHKEFETREL 504

Query: 419 KVFESM-LESGTHPNSVTFLGILSA 442
            V E++ L++G +P+S   L  + A
Sbjct: 505 VVAENLILQAGYNPSSYVLLSNMYA 529



 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 81/314 (25%), Positives = 158/314 (50%), Gaps = 48/314 (15%)

Query: 8   KSLVVHLTSSITKYSKR-GFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFE 66
           K  ++   S I  Y++R   +D A  LF  MP+++++S+N+++ G++++GR+ +A+ LF+
Sbjct: 181 KKNLISWNSMIGGYAQREDGVDIASKLFAEMPEKDLISWNSLIDGYVKHGRIEDAKGLFD 240

Query: 67  EMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKV 126
            MP R+VV+W  MI G A  G V +A+ LF+ MP R+VV++NSM+ G ++N    EA +V
Sbjct: 241 VMPRRDVVTWATMIDGYAKLGFVHKAKSLFDVMPHRDVVAYNSMMGGYVQNKYHMEALEV 300

Query: 127 FNSMPIKNVISWN----------------------------------------AMIAGYV 146
           F  M  ++ +S +                                        A+I  Y 
Sbjct: 301 FYDMEKESHLSPDETTLVIVLSAIAQLGRLSKAVDIHLYIVEKRFLLDGKLGVALIDMYS 360

Query: 147 ECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLF----RRMPRKNVVSWTA 202
           +C  + +A+ +FE +E +++  W +MI G    G  E  + +     +R  + + +++  
Sbjct: 361 KCGSIQQAMAVFEGIENKSIDHWNAMIGGLAVHGLGEAAFDMLMEIEKRFIKPDYITFVG 420

Query: 203 MIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVP 262
           ++   + +G  KE LL F  M+    +     +Q    M++   R G +E A++L   +P
Sbjct: 421 VLNACSHSGLVKEGLLCFELMRR--KHKIEPRLQHYGCMVDLLARSGSIELAKHLISEMP 478

Query: 263 VR-DEISWTSMIDG 275
           +  +++ W + ++ 
Sbjct: 479 IEPNDVIWRTFLNA 492



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 69/271 (25%), Positives = 120/271 (44%), Gaps = 19/271 (7%)

Query: 296 DAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIH 355
           D   W A+I          +A +L   M  + VP    + S++  A         G QIH
Sbjct: 49  DPFLWNAVIKSHSHGVDPRQALFLLCSMIENNVPVDKFSLSLVTKACSRLGFAKEGMQIH 108

Query: 356 CVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLAN 415
             L KT   SDL L+NCLI +Y KC  +  A  +F  M  RD VS+NSM+ G+   GL  
Sbjct: 109 GFLTKTVICSDLFLQNCLIGLYIKCSCLGYARQVFDRMPQRDSVSYNSMIDGYVKCGLIE 168

Query: 416 ETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPE--HYV 473
              ++F+ M +   +        ++S  S  G  ++  +  +    ++   P  +   + 
Sbjct: 169 SARELFDLMPKEKKN--------LISWNSMIGGYAQREDGVDIASKLFAEMPEKDLISWN 220

Query: 474 SMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIA-EHAAKRLLELD 532
           S+I+   + G+I++A+     +P   D   W  ++      +G A++   H AK L ++ 
Sbjct: 221 SLIDGYVKHGRIEDAKGLFDVMP-RRDVVTWATMI------DGYAKLGFVHKAKSLFDVM 273

Query: 533 P-LNAPAHVVLCNIYAASGRHVEEHKLRMDM 562
           P  +  A+  +   Y  +  H+E  ++  DM
Sbjct: 274 PHRDVVAYNSMMGGYVQNKYHMEALEVFYDM 304


>gi|224071603|ref|XP_002303536.1| predicted protein [Populus trichocarpa]
 gi|222840968|gb|EEE78515.1| predicted protein [Populus trichocarpa]
          Length = 596

 Score =  284 bits (726), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 164/530 (30%), Positives = 282/530 (53%), Gaps = 20/530 (3%)

Query: 57  RLSE-ARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLI 115
           R+S+    +   +P  +  SW   I   +  G+  EA  L+ +M  + +      V   +
Sbjct: 72  RISQYVHSILYHLPHPDSFSWGWAIRYFSQQGQFKEALYLYVQMQRQGLCPSTFAVSSAL 131

Query: 116 RN--------GELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVV 167
           R         G ++   + +       V    A++  Y +   M  A  +F+E+ E+NVV
Sbjct: 132 RAYARTTYKMGGMSIHAESYKYGFSNCVYVQTALVDLYSKLGDMNTAQKVFDELAEKNVV 191

Query: 168 TWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGIC 227
           +W S++SG+ ++G + E   +F ++ +K+V+SW +MI G+A  G    + +LF +M    
Sbjct: 192 SWNSILSGHLKSGNLLEAQRVFDQISKKDVISWNSMISGYAKIGDMDRACVLFQQMP--- 248

Query: 228 DNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYY 287
                 N  S N++I+GY+  G ++ A   FD +P R+ +SW +MI GY   G V +A  
Sbjct: 249 ----EKNYSSWNALISGYVNCGDIKSAWRFFDAMPERNSVSWITMIAGYSKCGDVDSASK 304

Query: 288 LFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEM-RAHG-VPPLNATFSVLFGAAGAT 345
           LF  +  +D + + AMIS   QN    +A +LF EM +A+  + P   T + +  A    
Sbjct: 305 LFDQIAKKDLLTFNAMISCFAQNSQPRKALWLFSEMLKAYANIQPDQMTLASVVSACSQL 364

Query: 346 ANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMV 405
            ++     I   +    +E D  L   L+ +YAKCG +D AY +F  +  +D+V++++M+
Sbjct: 365 GDLRFASWIESYVNDLGTEIDDQLVTALLDLYAKCGSVDKAYELFHGLNKKDVVAYSAMI 424

Query: 406 MGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKI 465
            G   +G   + +K+F+ M+++  HPN  TF G+L+AC+HAGLV  G+  F++M D + +
Sbjct: 425 SGCGINGKVADAIKLFDMMVDAQIHPNLATFTGLLTACNHAGLVKEGYRFFSSMKD-HGL 483

Query: 466 QPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAA 525
            P  +HY  M++LLGRAG++++A E +  +P +P   +WGALL AC     N E+ E AA
Sbjct: 484 VPSTDHYAIMVDLLGRAGRLQDAYELIKSMPMQPHSGVWGALLLACN-VHNNVELGEIAA 542

Query: 526 KRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSW 575
           +    L+      + +L NIY+++GR  +  +LR     K + K+ GCSW
Sbjct: 543 QHCFNLETNATAYYSLLANIYSSAGRWDDVGRLRKLWKEKKLAKLSGCSW 592



 Score =  189 bits (479), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 113/361 (31%), Positives = 199/361 (55%), Gaps = 23/361 (6%)

Query: 46  NAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVV 105
            A++  + + G ++ A+++F+E+ E+NVVSW +++ G   +G + EA+++F+++ +++V+
Sbjct: 163 TALVDLYSKLGDMNTAQKVFDELAEKNVVSWNSILSGHLKSGNLLEAQRVFDQISKKDVI 222

Query: 106 SWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERN 165
           SWNSM+ G  + G+++ A  +F  MP KN  SWNA+I+GYV C  +  A   F+ M ERN
Sbjct: 223 SWNSMISGYAKIGDMDRACVLFQQMPEKNYSSWNALISGYVNCGDIKSAWRFFDAMPERN 282

Query: 166 VVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKG 225
            V+W +MI+GY + G+V+    LF ++ +K+++++ AMI  FA N   +++L LF EM  
Sbjct: 283 SVSWITMIAGYSKCGDVDSASKLFDQIAKKDLLTFNAMISCFAQNSQPRKALWLFSEMLK 342

Query: 226 ICDNGNNCN------VQSCNSMINGYIRFGR-LEEAQNLFDTVPVRDEISWTSMIDGYLS 278
              N           V +C+ +  G +RF   +E   N   T  + D++  T+++D Y  
Sbjct: 343 AYANIQPDQMTLASVVSACSQL--GDLRFASWIESYVNDLGT-EIDDQLV-TALLDLYAK 398

Query: 279 VGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVL 338
            G V  AY LFH +  +D VA++AMISG   N    +A  LF  M    + P  ATF+ L
Sbjct: 399 CGSVDKAYELFHGLNKKDVVAYSAMISGCGINGKVADAIKLFDMMVDAQIHPNLATFTGL 458

Query: 339 FGAAGATANIDLGRQI------HCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSN 392
             A      +  G +       H ++  T+  +       ++ +  + G + +AY +  +
Sbjct: 459 LTACNHAGLVKEGYRFFSSMKDHGLVPSTDHYA------IMVDLLGRAGRLQDAYELIKS 512

Query: 393 M 393
           M
Sbjct: 513 M 513



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 92/340 (27%), Positives = 170/340 (50%), Gaps = 57/340 (16%)

Query: 1   MSERNHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSE 60
           ++E+N     VV   S ++ + K G + EA+ +F  + +++V+S+N+M+SG+ + G +  
Sbjct: 185 LAEKN-----VVSWNSILSGHLKSGNLLEAQRVFDQISKKDVISWNSMISGYAKIGDMDR 239

Query: 61  ARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGEL 120
           A  LF++MPE+N  SW A+I G  + G +  A + F+ MPERN VSW +M+ G  + G++
Sbjct: 240 ACVLFQQMPEKNYSSWNALISGYVNCGDIKSAWRFFDAMPERNSVSWITMIAGYSKCGDV 299

Query: 121 NEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEM------------------- 161
           + A K+F+ +  K+++++NAMI+ + +     +A+ LF EM                   
Sbjct: 300 DSASKLFDQIAKKDLLTFNAMISCFAQNSQPRKALWLFSEMLKAYANIQPDQMTLASVVS 359

Query: 162 -----EERNVVTW-----------------TSMISGYCRAGEVEEGYCLFRRMPRKNVVS 199
                 +    +W                 T+++  Y + G V++ Y LF  + +K+VV+
Sbjct: 360 ACSQLGDLRFASWIESYVNDLGTEIDDQLVTALLDLYAKCGSVDKAYELFHGLNKKDVVA 419

Query: 200 WTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFD 259
           ++AMI G   NG   +++ LF  M    D   + N+ +   ++      G ++E    F 
Sbjct: 420 YSAMISGCGINGKVADAIKLFDMM---VDAQIHPNLATFTGLLTACNHAGLVKEGYRFFS 476

Query: 260 T------VPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMP 293
           +      VP  D   +  M+D     G++ +AY L  +MP
Sbjct: 477 SMKDHGLVPSTDH--YAIMVDLLGRAGRLQDAYELIKSMP 514


>gi|356518523|ref|XP_003527928.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g08210-like [Glycine max]
          Length = 686

 Score =  283 bits (725), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 181/651 (27%), Positives = 314/651 (48%), Gaps = 97/651 (14%)

Query: 14  LTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNV 73
           L S I+ Y+K    D+A+ LF  MP RN+VS+  M+S F  +GR  EA  L+  M E   
Sbjct: 41  LNSIISVYAKCSRFDDARTLFDEMPHRNIVSFTTMVSAFTNSGRPHEALTLYNHMLESKT 100

Query: 74  VS-----WTAMI--CGLA---------------------------------DAGRVCEAR 93
           V      ++A++  CGL                                    G + +A+
Sbjct: 101 VQPNQFLYSAVLKACGLVGDVELGMLVHQHVSEARLEFDTVLMNALLDMYVKCGSLMDAK 160

Query: 94  KLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVE------ 147
           ++F E+P +N  SWN++++G  + G + +A  +F+ MP  +++SWN++IAG  +      
Sbjct: 161 RVFHEIPCKNSTSWNTLILGHAKQGLMRDAFNLFDQMPEPDLVSWNSIIAGLADNASPHA 220

Query: 148 -------------------------CCMMGEAIV-------LFEEMEERNVVTWTSMISG 175
                                    C ++GE  +       + +   E +    +S+I  
Sbjct: 221 LQFLSMMHGKGLKLDAFTFPCALKACGLLGELTMGRQIHCCIIKSGLECSCYCISSLIDM 280

Query: 176 YCRAGEVEEGYCLFRRMP--RKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNC 233
           Y     ++E   +F +     +++  W +M+ G+  NG    +L +   M     +G   
Sbjct: 281 YSNCKLLDEAMKIFDKNSPLAESLAVWNSMLSGYVANGDWWRALGMIACMH---HSGAQF 337

Query: 234 NVQSCNSMINGYIRFGRLEEAQNLFDTVPVR----DEISWTSMIDGYLSVGQVSNAYYLF 289
           +  + +  +   I F  L  A  +   +  R    D +  + +ID Y   G +++A  LF
Sbjct: 338 DSYTFSIALKVCIYFDNLRLASQVHGLIITRGYELDHVVGSILIDLYAKQGNINSALRLF 397

Query: 290 HNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANID 349
             +P++D VAW+++I G  +  L      LFM+M    +   +   S++   + + A++ 
Sbjct: 398 ERLPNKDVVAWSSLIVGCARLGLGTLVFSLFMDMVHLDLEIDHFVLSIVLKVSSSLASLQ 457

Query: 350 LGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFS 409
            G+QIH   +K   ES+ ++   L  MYAKCG I++A  +F  +   D +SW  +++G +
Sbjct: 458 SGKQIHSFCLKKGYESERVITTALTDMYAKCGEIEDALALFDCLYEIDTMSWTGIIVGCA 517

Query: 410 HHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGP 469
            +G A++ + +   M+ESGT PN +T LG+L+AC HAGLV   W +F ++   + + P P
Sbjct: 518 QNGRADKAISILHKMIESGTKPNKITILGVLTACRHAGLVEEAWTIFKSIETEHGLTPCP 577

Query: 470 EHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLL 529
           EHY  M+++  +AG+ KEA   +  +PF+PD  IW +LL ACG  + N  +A   A+ LL
Sbjct: 578 EHYNCMVDIFAKAGRFKEARNLINDMPFKPDKTIWCSLLDACGTYK-NRHLANIVAEHLL 636

Query: 530 ELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKV----PGCSWL 576
              P +A  +++L N+YA+ G      K+R     + VRKV     G SW+
Sbjct: 637 ATSPEDASVYIMLSNVYASLGMWDNLSKVR-----EAVRKVGIKGAGKSWI 682



 Score =  159 bits (403), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 133/535 (24%), Positives = 255/535 (47%), Gaps = 50/535 (9%)

Query: 27  IDEAKALFQLMPQRNVVSY----NAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICG 82
           I  AK+L  L+ +  + ++    N+++S + +  R  +AR LF+EMP RN+VS+T M+  
Sbjct: 19  IKHAKSLHSLIIKLGLSNHIFLLNSIISVYAKCSRFDDARTLFDEMPHRNIVSFTTMVSA 78

Query: 83  LADAGRVCEARKLFEEMPERNVVSWNSMV---------------VGLIRNGELNEARKVF 127
             ++GR  EA  L+  M E   V  N  +               +G++ +  ++EAR  F
Sbjct: 79  FTNSGRPHEALTLYNHMLESKTVQPNQFLYSAVLKACGLVGDVELGMLVHQHVSEARLEF 138

Query: 128 NSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYC 187
           +++ +      NA++  YV+C  + +A  +F E+  +N  +W ++I G+ + G + + + 
Sbjct: 139 DTVLM------NALLDMYVKCGSLMDAKRVFHEIPCKNSTSWNTLILGHAKQGLMRDAFN 192

Query: 188 LFRRMPRKNVVSWTAMIGGFAWNGF-HKESLLLFIEMKGICDNGNN--CNVQSCNSMING 244
           LF +MP  ++VSW ++I G A N   H    L  +  KG+  +     C +++C  +  G
Sbjct: 193 LFDQMPEPDLVSWNSIIAGLADNASPHALQFLSMMHGKGLKLDAFTFPCALKACGLL--G 250

Query: 245 YIRFGRLEEAQNLFDTVPVRDEISW---TSMIDGYLSVGQVSNAYYLF-HNMPDRDAVA- 299
            +  GR    Q     +    E S    +S+ID Y +   +  A  +F  N P  +++A 
Sbjct: 251 ELTMGR----QIHCCIIKSGLECSCYCISSLIDMYSNCKLLDEAMKIFDKNSPLAESLAV 306

Query: 300 WTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLM 359
           W +M+SG V N  +  A  +   M   G    + TFS+         N+ L  Q+H +++
Sbjct: 307 WNSMLSGYVANGDWWRALGMIACMHHSGAQFDSYTFSIALKVCIYFDNLRLASQVHGLII 366

Query: 360 KTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLK 419
               E D ++ + LI +YAK G I++A  +F  + ++D+V+W+S+++G +  GL      
Sbjct: 367 TRGYELDHVVGSILIDLYAKQGNINSALRLFERLPNKDVVAWSSLIVGCARLGLGTLVFS 426

Query: 420 VFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEH----YVSM 475
           +F  M+      +      +L   S    +  G ++ +     + ++ G E       ++
Sbjct: 427 LFMDMVHLDLEIDHFVLSIVLKVSSSLASLQSGKQIHS-----FCLKKGYESERVITTAL 481

Query: 476 INLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLE 530
            ++  + G+I++A      L +E D   W  ++  C    G A+ A     +++E
Sbjct: 482 TDMYAKCGEIEDALALFDCL-YEIDTMSWTGIIVGCAQ-NGRADKAISILHKMIE 534


>gi|449440243|ref|XP_004137894.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Cucumis sativus]
          Length = 688

 Score =  283 bits (725), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 174/572 (30%), Positives = 291/572 (50%), Gaps = 24/572 (4%)

Query: 38  PQRNVVSYNAMLSGFLQNG-------RLSEARRLFEEMPERNVVSWTAMICGLADAGRVC 90
           P   V S    +  +L NG       +   AR L   + + N +    + C L D G   
Sbjct: 7   PTSPVFSKALEIKNYLSNGLNFFNQLKHIHARLLRLHLDQDNYLLNLILCCAL-DFGSTN 65

Query: 91  EARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCM 150
            ++ +F ++ E N+  WN+M+ GL+     ++A  ++ SM     +  N  I   ++ C 
Sbjct: 66  YSKLVFSQVKEPNIFLWNTMIRGLVSKDCFDDAIHLYGSMRGGGFLPNNFTIPFVLKACA 125

Query: 151 ------MGEAI--VLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTA 202
                 +G  I  +L +   + +V   TS++S Y +    ++   +F  +P KNVVSWTA
Sbjct: 126 RKLDVRLGLKIHSLLVKAGYDHDVFVKTSLLSLYVKCDNFDDALKVFDDIPDKNVVSWTA 185

Query: 203 MIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQ----NLF 258
           +I G+  +G  +E++  F   K + + G   +  S   ++    R G     +     + 
Sbjct: 186 IITGYISSGHFREAIGAF---KKLLEMGLKPDSFSLVKVLAACARLGDCTSGEWIDRYIS 242

Query: 259 DTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATY 318
           D+   R+    TS++D Y+  G +  A  +F  MP++D V+W+ MI G   N L  +A  
Sbjct: 243 DSGMGRNVFVATSLLDMYVKCGNLERANLIFSAMPEKDIVSWSTMIQGYAFNGLPQQALD 302

Query: 319 LFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYA 378
           LF +M++  + P   T   +  A      +DLG     ++ + E  S+ +L   LI MY+
Sbjct: 303 LFFQMQSENLKPDCYTMVGVLSACATLGALDLGIWASSLMDRNEFLSNPVLGTALIDMYS 362

Query: 379 KCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLG 438
           KCG +  A+ IF+ M  +D V WN+M++G S +G A     +F  + + G  P+  TF+G
Sbjct: 363 KCGSVTQAWEIFTAMKRKDRVVWNAMMVGLSMNGHAKAVFSLFSLVEKHGIRPDENTFIG 422

Query: 439 ILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFE 498
           +L  C+H G V+ G + FN M  V+ + P  EHY  M++LLGRAG + EA + +  +P +
Sbjct: 423 LLCGCTHGGFVNEGRQFFNNMKRVFSLTPSIEHYGCMVDLLGRAGLLNEAHQLINNMPMK 482

Query: 499 PDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKL 558
           P+  +WGALLG C     +  +AE   K+L+EL+P N+  +V L NIY+ + R  E  K+
Sbjct: 483 PNAVVWGALLGGCKL-HKDTHLAEQVLKKLIELEPWNSGNYVQLSNIYSGNHRWEEAEKI 541

Query: 559 RMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDK 590
           R  M  + ++K+  CSW+  +G +  FL GDK
Sbjct: 542 RSTMKEQQIQKIRACSWIEIDGIVHEFLVGDK 573



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 88/344 (25%), Positives = 152/344 (44%), Gaps = 54/344 (15%)

Query: 15  TSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEA----RRLFEEMPE 70
           TS ++ Y K    D+A  +F  +P +NVVS+ A+++G++ +G   EA    ++L E   +
Sbjct: 153 TSLLSLYVKCDNFDDALKVFDDIPDKNVVSWTAIITGYISSGHFREAIGAFKKLLEMGLK 212

Query: 71  RNVVSWTAMICGLADAGRVCEA----RKLFEEMPERNVVSWNSMVVGLIRNGELNEARKV 126
            +  S   ++   A  G         R + +    RNV    S++   ++ G L  A  +
Sbjct: 213 PDSFSLVKVLAACARLGDCTSGEWIDRYISDSGMGRNVFVATSLLDMYVKCGNLERANLI 272

Query: 127 FNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNV-------------------- 166
           F++MP K+++SW+ MI GY    +  +A+ LF +M+  N+                    
Sbjct: 273 FSAMPEKDIVSWSTMIQGYAFNGLPQQALDLFFQMQSENLKPDCYTMVGVLSACATLGAL 332

Query: 167 -------------------VTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGF 207
                              V  T++I  Y + G V + + +F  M RK+ V W AM+ G 
Sbjct: 333 DLGIWASSLMDRNEFLSNPVLGTALIDMYSKCGSVTQAWEIFTAMKRKDRVVWNAMMVGL 392

Query: 208 AWNGFHKESLLLF--IEMKGICDNGNNCNVQSCNSMINGYIRFGR--LEEAQNLFDTVPV 263
           + NG  K    LF  +E  GI  + N      C     G++  GR      + +F   P 
Sbjct: 393 SMNGHAKAVFSLFSLVEKHGIRPDENTFIGLLCGCTHGGFVNEGRQFFNNMKRVFSLTPS 452

Query: 264 RDEISWTSMIDGYLSVGQVSNAYYLFHNMPDR-DAVAWTAMISG 306
            +   +  M+D     G ++ A+ L +NMP + +AV W A++ G
Sbjct: 453 IEH--YGCMVDLLGRAGLLNEAHQLINNMPMKPNAVVWGALLGG 494



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 59/206 (28%), Positives = 97/206 (47%), Gaps = 28/206 (13%)

Query: 1   MSERNHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSE 60
           + +RN   S  V  T+ I  YSK G + +A  +F  M +++ V +NAM+ G   NG    
Sbjct: 341 LMDRNEFLSNPVLGTALIDMYSKCGSVTQAWEIFTAMKRKDRVVWNAMMVGLSMNGHAKA 400

Query: 61  ARRLFEEM------PERNVVSWTAMICGLADAGRVCEARKLFEEMPE-----RNVVSWNS 109
              LF  +      P+ N  ++  ++CG    G V E R+ F  M        ++  +  
Sbjct: 401 VFSLFSLVEKHGIRPDEN--TFIGLLCGCTHGGFVNEGRQFFNNMKRVFSLTPSIEHYGC 458

Query: 110 MVVGLIRNGELNEARKVFNSMPIK-NVISWNAMIAGYVECCMMGEAIVLFEEMEER---- 164
           MV  L R G LNEA ++ N+MP+K N + W A++ G    C + +   L E++ ++    
Sbjct: 459 MVDLLGRAGLLNEAHQLINNMPMKPNAVVWGALLGG----CKLHKDTHLAEQVLKKLIEL 514

Query: 165 ------NVVTWTSMISGYCRAGEVEE 184
                 N V  +++ SG  R  E E+
Sbjct: 515 EPWNSGNYVQLSNIYSGNHRWEEAEK 540


>gi|297740109|emb|CBI30291.3| unnamed protein product [Vitis vinifera]
          Length = 616

 Score =  283 bits (725), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 164/500 (32%), Positives = 271/500 (54%), Gaps = 35/500 (7%)

Query: 99  MPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLF 158
           MP+RN+VSW +M+ GL +N + +EA + F  M I   +      +  +  C    +I + 
Sbjct: 1   MPQRNLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIEMG 60

Query: 159 EEME--------ERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWN 210
           ++M            +   +++   Y + G + +   +F  MP K+ VSWTAMI G++  
Sbjct: 61  KQMHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYSKI 120

Query: 211 GFHKESLLLF---------IEMKGICDNGNNCN-VQSCNSMINGYIRFGRLEEAQNL--- 257
           G  +E+LL F         I+   +C     C  +++C        +FGR   +  +   
Sbjct: 121 GEFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKAC--------KFGRSVHSSVVKLG 172

Query: 258 FDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFH-NMPDRDAVAWTAMISGLVQNELFVEA 316
           F++    D     ++ D Y   G + +A  +F  +   R+ V++T +I G V+ E   + 
Sbjct: 173 FES----DIFVGNALTDMYSKAGDMESASNVFGIDSECRNVVSYTCLIDGYVETEQIEKG 228

Query: 317 TYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISM 376
             +F+E+R  G+ P   TFS L  A    A ++ G Q+H  +MK   + D  + + L+ M
Sbjct: 229 LSVFVELRRQGIEPNEFTFSSLIKACANQAALEQGTQLHAQVMKINFDEDPFVSSILVDM 288

Query: 377 YAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTF 436
           Y KCG+++ A   F  +     ++WNS+V  F  HGL  + +K+FE M++ G  PN++TF
Sbjct: 289 YGKCGLLEQAIQAFDEIGDPTEIAWNSLVSVFGQHGLGKDAIKIFERMVDRGVKPNAITF 348

Query: 437 LGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLP 496
           + +L+ CSHAGLV  G + F +M   Y + PG EHY  +I+LLGRAG++KEA+EF+ R+P
Sbjct: 349 ISLLTGCSHAGLVEEGLDYFYSMDKTYGVVPGEEHYSCVIDLLGRAGRLKEAKEFINRMP 408

Query: 497 FEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEH 556
           FEP+   W + LGAC    G+ E+ + AA++L++L+P N+ A V+L NIYA   +  +  
Sbjct: 409 FEPNAFGWCSFLGACRI-HGDKEMGKLAAEKLVKLEPKNSGALVLLSNIYANERQWEDVR 467

Query: 557 KLRMDMGLKGVRKVPGCSWL 576
            +RM M    V+K+PG SW+
Sbjct: 468 SVRMRMRDGNVKKLPGYSWV 487



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 96/365 (26%), Positives = 156/365 (42%), Gaps = 64/365 (17%)

Query: 37  MPQRNVVSYNAMLSGFLQNGRLSEARRLF------EEMPERNVVSWTAMICG-------- 82
           MPQRN+VS+ AM+SG  QN + SEA R F       E+P +   S     C         
Sbjct: 1   MPQRNLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIEMG 60

Query: 83  -------------------------LADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRN 117
                                     +  G + +A K+FEEMP ++ VSW +M+ G  + 
Sbjct: 61  KQMHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYSKI 120

Query: 118 GELNEARKVFNSMPIKNV-ISWNAMIA-----GYVECCMMGEAI--VLFEEMEERNVVTW 169
           GE  EA   F  M  + V I  + + +     G ++ C  G ++   + +   E ++   
Sbjct: 121 GEFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSVHSSVVKLGFESDIFVG 180

Query: 170 TSMISGYCRAGEVEEGYCLFRRMPR-KNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICD 228
            ++   Y +AG++E    +F      +NVVS+T +I G+      ++ L +F+E++    
Sbjct: 181 NALTDMYSKAGDMESASNVFGIDSECRNVVSYTCLIDGYVETEQIEKGLSVFVELR---R 237

Query: 229 NGNNCNVQSCNSMINGYIRFGRLEEAQNL--------FDTVPVRDEISWTSMIDGYLSVG 280
            G   N  + +S+I        LE+   L        FD  P    I    ++D Y   G
Sbjct: 238 QGIEPNEFTFSSLIKACANQAALEQGTQLHAQVMKINFDEDPFVSSI----LVDMYGKCG 293

Query: 281 QVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATF-SVLF 339
            +  A   F  + D   +AW +++S   Q+ L  +A  +F  M   GV P   TF S+L 
Sbjct: 294 LLEQAIQAFDEIGDPTEIAWNSLVSVFGQHGLGKDAIKIFERMVDRGVKPNAITFISLLT 353

Query: 340 GAAGA 344
           G + A
Sbjct: 354 GCSHA 358



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 83/320 (25%), Positives = 144/320 (45%), Gaps = 38/320 (11%)

Query: 52  FLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNV-VSWNSM 110
           + + G + +A ++FEEMP ++ VSWTAMI G +  G   EA   F++M +  V +  + +
Sbjct: 86  YSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYSKIGEFEEALLAFKKMIDEEVTIDQHVL 145

Query: 111 VVGLIRNGELNEAR--KVFNSMPIK-----NVISWNAMIAGYVECCMMGEAIVLFE-EME 162
              L   G L   +  +  +S  +K     ++   NA+   Y +   M  A  +F  + E
Sbjct: 146 CSTLGACGALKACKFGRSVHSSVVKLGFESDIFVGNALTDMYSKAGDMESASNVFGIDSE 205

Query: 163 ERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIE 222
            RNVV++T +I GY    ++E+G  +F  + R+          G   N F   SL+    
Sbjct: 206 CRNVVSYTCLIDGYVETEQIEKGLSVFVELRRQ----------GIEPNEFTFSSLIKACA 255

Query: 223 MKGICDNGNNCNVQ-----------SCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTS 271
            +   + G   + Q             + +++ Y + G LE+A   FD +    EI+W S
Sbjct: 256 NQAALEQGTQLHAQVMKINFDEDPFVSSILVDMYGKCGLLEQAIQAFDEIGDPTEIAWNS 315

Query: 272 MIDGYLSVGQVSNAYYLFHNMPDR----DAVAWTAMISGLVQNELFVEATYLFMEM-RAH 326
           ++  +   G   +A  +F  M DR    +A+ + ++++G     L  E    F  M + +
Sbjct: 316 LVSVFGQHGLGKDAIKIFERMVDRGVKPNAITFISLLTGCSHAGLVEEGLDYFYSMDKTY 375

Query: 327 GVPPLNATFSV---LFGAAG 343
           GV P    +S    L G AG
Sbjct: 376 GVVPGEEHYSCVIDLLGRAG 395



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 66/319 (20%), Positives = 129/319 (40%), Gaps = 63/319 (19%)

Query: 12  VHLTSSITKYSKRGFIDEAKALFQLMP--------------------------------- 38
           V  T+ I  YSK G  +EA   F+ M                                  
Sbjct: 108 VSWTAMIDGYSKIGEFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSVHSS 167

Query: 39  ------QRNVVSYNAMLSGFLQNGRLSEARRLFEEMPE-RNVVSWTAMICGLADAGRVCE 91
                 + ++   NA+   + + G +  A  +F    E RNVVS+T +I G  +  ++ +
Sbjct: 168 VVKLGFESDIFVGNALTDMYSKAGDMESASNVFGIDSECRNVVSYTCLIDGYVETEQIEK 227

Query: 92  ARKLFEEMP----ERNVVSWNSMVVGLIRNGELNEARKV--------FNSMPIKNVISWN 139
              +F E+     E N  +++S++        L +  ++        F+  P  + I   
Sbjct: 228 GLSVFVELRRQGIEPNEFTFSSLIKACANQAALEQGTQLHAQVMKINFDEDPFVSSI--- 284

Query: 140 AMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRM----PRK 195
            ++  Y +C ++ +AI  F+E+ +   + W S++S + + G  ++   +F RM     + 
Sbjct: 285 -LVDMYGKCGLLEQAIQAFDEIGDPTEIAWNSLVSVFGQHGLGKDAIKIFERMVDRGVKP 343

Query: 196 NVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQ 255
           N +++ +++ G +  G  +E L  F  M             SC  +I+   R GRL+EA+
Sbjct: 344 NAITFISLLTGCSHAGLVEEGLDYFYSMDKTYGVVPGEEHYSC--VIDLLGRAGRLKEAK 401

Query: 256 NLFDTVPVR-DEISWTSMI 273
              + +P   +   W S +
Sbjct: 402 EFINRMPFEPNAFGWCSFL 420



 Score = 52.8 bits (125), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 37/137 (27%), Positives = 68/137 (49%), Gaps = 10/137 (7%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPER----NV 73
           +  Y K G +++A   F  +     +++N+++S F Q+G   +A ++FE M +R    N 
Sbjct: 286 VDMYGKCGLLEQAIQAFDEIGDPTEIAWNSLVSVFGQHGLGKDAIKIFERMVDRGVKPNA 345

Query: 74  VSWTAMICGLADAGRVCEARKLFEEMPERNVV----SWNSMVVGLI-RNGELNEARKVFN 128
           +++ +++ G + AG V E    F  M +   V       S V+ L+ R G L EA++  N
Sbjct: 346 ITFISLLTGCSHAGLVEEGLDYFYSMDKTYGVVPGEEHYSCVIDLLGRAGRLKEAKEFIN 405

Query: 129 SMPIK-NVISWNAMIAG 144
            MP + N   W + +  
Sbjct: 406 RMPFEPNAFGWCSFLGA 422


>gi|57899090|dbj|BAD86909.1| putative PPR986-12 [Oryza sativa Japonica Group]
          Length = 560

 Score =  283 bits (725), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 176/536 (32%), Positives = 273/536 (50%), Gaps = 28/536 (5%)

Query: 77  TAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSM----PI 132
           T +I  L   G VC AR LF+EMPER+VV+W +M+ G   NG   EA  VF  M      
Sbjct: 7   TTLISSLCSRGAVCHARALFDEMPERDVVAWTAMLSGYASNGLRREALDVFRRMVAAGAA 66

Query: 133 KNVISWNAMIAGYVECCMMGEAIVLFEEMEERNV----VTWTSMISGYCRAGEVEEGYCL 188
            N  + ++++      C    A+ L      R V        ++I  Y     + EG   
Sbjct: 67  PNEYTLSSVLTACRGPCAPAMAMPLHAVAVRRGVDRMPYVVNALIDSY---ASLAEGVVD 123

Query: 189 FRRM-----PRKNVVSWTAMIGGFAWNGFHKESLLLFIEM--KGICDNGNNCNV--QSCN 239
            RR+       +   SWT+MI G+A  G  +  L LF  M   G+  +   C++   +C 
Sbjct: 124 ARRLFDALGSGRTAASWTSMIAGYARWGQERTGLRLFKTMLKDGVELSTFACSIALHACT 183

Query: 240 SMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVA 299
            +I+  +  G+    Q +   + V   +   S+ID Y +  ++ +A  LF   P+R+ + 
Sbjct: 184 LVID--LCLGQQLHLQCIKKALDVNLAVV-NSLIDMYCTCARILDARSLFDGTPERNLIT 240

Query: 300 WTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLM 359
           W  MI+G  Q +  + A  L +EM      P   T + +  A    A +  G+Q+H  ++
Sbjct: 241 WNTMIAGYSQCDPLM-ALQLLLEMNDE---PNCFTLTSITSACADLAALRCGKQVHGAVL 296

Query: 360 KTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLK 419
           +     DL + N L+ MY+KCG I NA N+F  M  +D  SW SM+ G+  +G  NE ++
Sbjct: 297 RRSYSDDLQMGNALVDMYSKCGSITNAKNVFDRMGCKDKFSWTSMIAGYGMNGYGNEAVQ 356

Query: 420 VFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLL 479
           +F SM+ +G HP+ V FL ++S+CSHAGLV  GW  F +M + Y +QP  E Y S++NLL
Sbjct: 357 LFSSMIHAGVHPDHVVFLSLISSCSHAGLVDEGWNFFRSMINEYNLQPNKEVYGSVVNLL 416

Query: 480 GRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAH 539
            RAG+++EA + +  +PF PD  +WGALLGA      N E+   AA+++ E++P +   +
Sbjct: 417 ARAGRLREALDLIDTMPFAPDEYVWGALLGASKM-HNNVEMGRLAARKITEINPDDVKNY 475

Query: 540 VVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQV 595
           ++L +IYAA  +  E    R  +   G RK  G SW+     +  F + D    QV
Sbjct: 476 IMLASIYAAGSKWGEYAFTRRSLRGIGSRKEAGISWIEVMDKMYSFTAADSSSPQV 531



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 99/399 (24%), Positives = 159/399 (39%), Gaps = 95/399 (23%)

Query: 13  HLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEM---- 68
           H T+ I+    RG +  A+ALF  MP+R+VV++ AMLSG+  NG   EA  +F  M    
Sbjct: 5   HATTLISSLCSRGAVCHARALFDEMPERDVVAWTAMLSGYASNGLRREALDVFRRMVAAG 64

Query: 69  --PERNVVSWTAMIC-----------------------------GLAD-----AGRVCEA 92
             P    +S     C                              L D     A  V +A
Sbjct: 65  AAPNEYTLSSVLTACRGPCAPAMAMPLHAVAVRRGVDRMPYVVNALIDSYASLAEGVVDA 124

Query: 93  RKLFEEMPE-RNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMM 151
           R+LF+ +   R   SW SM+ G  R G+     ++F +M    V       +  +  C +
Sbjct: 125 RRLFDALGSGRTAASWTSMIAGYARWGQERTGLRLFKTMLKDGVELSTFACSIALHACTL 184

Query: 152 GEAIVLFEEME--------ERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAM 203
              + L +++         + N+    S+I  YC    + +   LF   P +N+++W  M
Sbjct: 185 VIDLCLGQQLHLQCIKKALDVNLAVVNSLIDMYCTCARILDARSLFDGTPERNLITWNTM 244

Query: 204 IGGFAWNGFHKESLLLFIEMKGICDNGNNC------------------------------ 233
           I G++       +L L +EM    ++  NC                              
Sbjct: 245 IAGYS-QCDPLMALQLLLEM----NDEPNCFTLTSITSACADLAALRCGKQVHGAVLRRS 299

Query: 234 ---NVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFH 290
              ++Q  N++++ Y + G +  A+N+FD +  +D+ SWTSMI GY   G  + A  LF 
Sbjct: 300 YSDDLQMGNALVDMYSKCGSITNAKNVFDRMGCKDKFSWTSMIAGYGMNGYGNEAVQLFS 359

Query: 291 NM------PDRDAVAWTAMISGLVQNELFVEATYLFMEM 323
           +M      PD   V + ++IS      L  E    F  M
Sbjct: 360 SMIHAGVHPDH--VVFLSLISSCSHAGLVDEGWNFFRSM 396



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 77/278 (27%), Positives = 125/278 (44%), Gaps = 45/278 (16%)

Query: 8   KSLVVHLT---SSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRL 64
           K+L V+L    S I  Y     I +A++LF   P+RN++++N M++G+ Q   L   + L
Sbjct: 201 KALDVNLAVVNSLIDMYCTCARILDARSLFDGTPERNLITWNTMIAGYSQCDPLMALQLL 260

Query: 65  FEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPER----NVVSWNSMVVGLIRNGEL 120
            E   E N  + T++    AD   +   +++   +  R    ++   N++V    + G +
Sbjct: 261 LEMNDEPNCFTLTSITSACADLAALRCGKQVHGAVLRRSYSDDLQMGNALVDMYSKCGSI 320

Query: 121 NEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNV----VTWTSMISGY 176
             A+ VF+ M  K+  SW +MIAGY       EA+ LF  M    V    V + S+IS  
Sbjct: 321 TNAKNVFDRMGCKDKFSWTSMIAGYGMNGYGNEAVQLFSSMIHAGVHPDHVVFLSLISSC 380

Query: 177 CRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQ 236
             AG V+EG+  FR M                 N ++ +                  N +
Sbjct: 381 SHAGLVDEGWNFFRSMI----------------NEYNLQP-----------------NKE 407

Query: 237 SCNSMINGYIRFGRLEEAQNLFDTVP-VRDEISWTSMI 273
              S++N   R GRL EA +L DT+P   DE  W +++
Sbjct: 408 VYGSVVNLLARAGRLREALDLIDTMPFAPDEYVWGALL 445


>gi|218186152|gb|EEC68579.1| hypothetical protein OsI_36919 [Oryza sativa Indica Group]
          Length = 586

 Score =  283 bits (725), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 162/466 (34%), Positives = 266/466 (57%), Gaps = 15/466 (3%)

Query: 140 AMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRM------- 192
           A+++ Y +  ++ +A+ LF+E   R++  ++S+++    +   E    + R M       
Sbjct: 19  ALVSAYAKSRLLPDALHLFDETPRRDIYIYSSLLTAISHSASPELALPILRCMLSADALH 78

Query: 193 PRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLE 252
           P   V+S  A +  FA     +    L         NG++  V+S  S+++ Y + G  +
Sbjct: 79  PDHFVISSVASV--FARLRSRRLGRQLHAHFVASPYNGDDV-VKS--SLVDMYCKCGSPD 133

Query: 253 EAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNEL 312
           + + +FD++  ++ + WT+++ GY S G+   A  LF +MP R+  AWTA+ISGLV    
Sbjct: 134 DGRKVFDSMSAKNSVVWTALVSGYASNGRSEEALQLFRSMPGRNLFAWTALISGLVNTGE 193

Query: 313 FVEATYLFMEMRAHGVPPLNA-TFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILEN 371
            V A  LF+EMR  GV   +A   S++ GA+   A   LGRQ+H   M+    S++I+ N
Sbjct: 194 SVGAVELFVEMRRDGVRIDDAFVLSIVIGASADLAAFVLGRQLHGSAMRLGFLSNMIVGN 253

Query: 372 CLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHP 431
            LI MY+KC  I +A  +F  +  RD++SW +MV+G + HG A E L +++ M+ +G  P
Sbjct: 254 ALIDMYSKCSDILSAREVFEGITFRDVISWTTMVVGEAQHGRAEEALALYDRMVLAGAKP 313

Query: 432 NSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEF 491
           N VTF+G++ ACSHAGLV +G +LF +M + Y I P  +HY   ++LL R+G + EAEE 
Sbjct: 314 NEVTFVGLIYACSHAGLVQKGRQLFESMKNEYGITPRLQHYTCYLDLLSRSGHLLEAEEL 373

Query: 492 VLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGR 551
           +  +P+EPD   WGALL AC   + +AE+    + +LLEL P ++  +++L N+YA +G+
Sbjct: 374 MTTMPYEPDEATWGALLSACTKYK-DAEMCIRISDKLLELRPKDSSTYILLSNVYAVNGK 432

Query: 552 HVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAE 597
                K+R  M    +RK PG SW+      ++F +G+ +P  V E
Sbjct: 433 WDSVAKVRKCMIGLEIRKEPGYSWIEAGREFRLFHAGE-VPLDVRE 477



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 83/275 (30%), Positives = 138/275 (50%), Gaps = 16/275 (5%)

Query: 15  TSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVV 74
           +S +  Y K G  D+ + +F  M  +N V + A++SG+  NGR  EA +LF  MP RN+ 
Sbjct: 120 SSLVDMYCKCGSPDDGRKVFDSMSAKNSVVWTALVSGYASNGRSEEALQLFRSMPGRNLF 179

Query: 75  SWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEA-----RKVFNS 129
           +WTA+I GL + G    A +LF EM    V   ++ V+ ++     + A     R++  S
Sbjct: 180 AWTALISGLVNTGESVGAVELFVEMRRDGVRIDDAFVLSIVIGASADLAAFVLGRQLHGS 239

Query: 130 MP----IKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEG 185
                 + N+I  NA+I  Y +C  +  A  +FE +  R+V++WT+M+ G  + G  EE 
Sbjct: 240 AMRLGFLSNMIVGNALIDMYSKCSDILSAREVFEGITFRDVISWTTMVVGEAQHGRAEEA 299

Query: 186 YCLFRRM----PRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSM 241
             L+ RM     + N V++  +I   +  G  ++   LF  MK   + G    +Q     
Sbjct: 300 LALYDRMVLAGAKPNEVTFVGLIYACSHAGLVQKGRQLFESMKN--EYGITPRLQHYTCY 357

Query: 242 INGYIRFGRLEEAQNLFDTVPVR-DEISWTSMIDG 275
           ++   R G L EA+ L  T+P   DE +W +++  
Sbjct: 358 LDLLSRSGHLLEAEELMTTMPYEPDEATWGALLSA 392



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 94/407 (23%), Positives = 182/407 (44%), Gaps = 19/407 (4%)

Query: 47  AMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEM------- 99
           A++S + ++  L +A  LF+E P R++  +++++  ++ +     A  +   M       
Sbjct: 19  ALVSAYAKSRLLPDALHLFDETPRRDIYIYSSLLTAISHSASPELALPILRCMLSADALH 78

Query: 100 PERNVVSWNSMVVGLIRNGEL-NEARKVFNSMPIK-NVISWNAMIAGYVECCMMGEAIVL 157
           P+  V+S  + V   +R+  L  +    F + P   + +  ++++  Y +C    +   +
Sbjct: 79  PDHFVISSVASVFARLRSRRLGRQLHAHFVASPYNGDDVVKSSLVDMYCKCGSPDDGRKV 138

Query: 158 FEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESL 217
           F+ M  +N V WT+++SGY   G  EE   LFR MP +N+ +WTA+I G    G    ++
Sbjct: 139 FDSMSAKNSVVWTALVSGYASNGRSEEALQLFRSMPGRNLFAWTALISGLVNTGESVGAV 198

Query: 218 LLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVP----VRDEISWTSMI 273
            LF+EM+      ++  V S   +I            + L  +      + + I   ++I
Sbjct: 199 ELFVEMRRDGVRIDDAFVLSI--VIGASADLAAFVLGRQLHGSAMRLGFLSNMIVGNALI 256

Query: 274 DGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNA 333
           D Y     + +A  +F  +  RD ++WT M+ G  Q+    EA  L+  M   G  P   
Sbjct: 257 DMYSKCSDILSAREVFEGITFRDVISWTTMVVGEAQHGRAEEALALYDRMVLAGAKPNEV 316

Query: 334 TFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILEN--CLISMYAKCGVIDNAYNIFS 391
           TF  L  A      +  GRQ+    MK E      L++  C + + ++ G +  A  + +
Sbjct: 317 TFVGLIYACSHAGLVQKGRQLFES-MKNEYGITPRLQHYTCYLDLLSRSGHLLEAEELMT 375

Query: 392 NM-VSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFL 437
            M    D  +W +++   + +  A   +++ + +LE     +S   L
Sbjct: 376 TMPYEPDEATWGALLSACTKYKDAEMCIRISDKLLELRPKDSSTYIL 422


>gi|449480927|ref|XP_004156032.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g49710-like [Cucumis sativus]
          Length = 720

 Score =  283 bits (725), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 177/558 (31%), Positives = 297/558 (53%), Gaps = 22/558 (3%)

Query: 57  RLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIR 116
           RLS ARR+F+   + NV S+  +I   A    V  A +LF+EMP+ + VS+N+++    R
Sbjct: 58  RLSAARRVFDHTHDCNVFSFNTLISAYAKESYVEVAHQLFDEMPQPDSVSYNTLIAAYAR 117

Query: 117 NGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTW------- 169
            G+   A ++F  M    +      ++G +  C  G  + L  ++   +VVT        
Sbjct: 118 RGDTQPAFQLFLEMREAFLDMDGFTLSGIITAC--GINVGLIRQLHALSVVTGLDSYVSV 175

Query: 170 -TSMISGYCRAGEVEEGYCLFRRMPR-KNVVSWTAMIGGFAWNGFHKESLLLFIEMKGIC 227
             ++I+ Y + G ++E   +F  +   ++ VSW +M+  +  +    ++L L++EM    
Sbjct: 176 GNALITSYSKNGFLKEARRIFHWLSEDRDEVSWNSMVVAYMQHREGSKALELYLEMTV-- 233

Query: 228 DNGNNCNVQSCNSMINGYIR----FGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQ-V 282
             G   ++ +  S++  +       G L+    L  +   ++    + +ID Y   G  +
Sbjct: 234 -RGLIVDIFTLASVLTAFTNVQDLLGGLQFHAKLIKSGYHQNSHVGSGLIDLYSKCGGCM 292

Query: 283 SNAYYLFHNMPDRDAVAWTAMISGL-VQNELFVEATYLFMEMRAHGVPPLNATFSVLFGA 341
            +   +F  + + D V W  MISG  +  +L  EA   F +++  G  P + +   +  A
Sbjct: 293 LDCRKVFDEISNPDLVLWNTMISGYSLYEDLSDEALECFRQLQGVGHRPDDCSLVCVISA 352

Query: 342 AGATANIDLGRQIHCVLMKTESESDLI-LENCLISMYAKCGVIDNAYNIFSNMVSRDLVS 400
               ++   GRQ+H + +K +  S+ I + N LI+MY+KCG + +A  +F  M   + VS
Sbjct: 353 CSNMSSPSQGRQVHGLALKLDIPSNRISVNNALIAMYSKCGNLRDAKTLFDTMPEHNTVS 412

Query: 401 WNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMF 460
           +NSM+ G++ HG+  ++L +F+ MLE    P ++TF+ +L+AC+H G V  G   FN M 
Sbjct: 413 YNSMIAGYAQHGMGFQSLHLFQRMLEMDFTPTNITFISVLAACAHTGRVEDGKIYFNMMK 472

Query: 461 DVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEI 520
             + I+P   H+  MI+LLGRAGK+ EAE  +  +PF+P    W ALLGAC    GN E+
Sbjct: 473 QKFGIEPEAGHFSCMIDLLGRAGKLSEAERLIETIPFDPGFFXWSALLGACRI-HGNVEL 531

Query: 521 AEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNG 580
           A  AA RLL+LDPLNA  +V+L NIY+ +GR  +   +R  M  +GV+K PGCSW+  N 
Sbjct: 532 AIKAANRLLQLDPLNAAPYVMLANIYSDNGRLQDAASVRKLMRDRGVKKKPGCSWIEVNR 591

Query: 581 GIQMFLSGDKIPAQVAEI 598
            I +F++ D     + +I
Sbjct: 592 RIHIFVAEDTFHPMIKKI 609



 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 108/460 (23%), Positives = 221/460 (48%), Gaps = 25/460 (5%)

Query: 115 IRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMIS 174
           +R G+   A  + + +P    +S N  +  Y +C  +  A  +F+   + NV ++ ++IS
Sbjct: 24  LRTGKSLHALYIKSFVPTSTYLS-NHFLLLYSKCRRLSAARRVFDHTHDCNVFSFNTLIS 82

Query: 175 GYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCN 234
            Y +   VE  + LF  MP+ + VS+  +I  +A  G  + +  LF+EM+    + +   
Sbjct: 83  AYAKESYVEVAHQLFDEMPQPDSVSYNTLIAAYARRGDTQPAFQLFLEMREAFLDMDGFT 142

Query: 235 VQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEIS-WTSMIDGYLSVGQVSNAYYLFHNMP 293
           +    +     I  G + +   L     +   +S   ++I  Y   G +  A  +FH + 
Sbjct: 143 LSGIITACG--INVGLIRQLHALSVVTGLDSYVSVGNALITSYSKNGFLKEARRIFHWLS 200

Query: 294 D-RDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGR 352
           + RD V+W +M+   +Q+    +A  L++EM   G+     T + +  A     ++  G 
Sbjct: 201 EDRDEVSWNSMVVAYMQHREGSKALELYLEMTVRGLIVDIFTLASVLTAFTNVQDLLGGL 260

Query: 353 QIHCVLMKTESESDLILENCLISMYAKC-GVIDNAYNIFSNMVSRDLVSWNSMVMGFS-H 410
           Q H  L+K+    +  + + LI +Y+KC G + +   +F  + + DLV WN+M+ G+S +
Sbjct: 261 QFHAKLIKSGYHQNSHVGSGLIDLYSKCGGCMLDCRKVFDEISNPDLVLWNTMISGYSLY 320

Query: 411 HGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPE 470
             L++E L+ F  +   G  P+  + + ++SACS+    S+G ++      +      P 
Sbjct: 321 EDLSDEALECFRQLQGVGHRPDDCSLVCVISACSNMSSPSQGRQVHGLALKL----DIPS 376

Query: 471 HYVS----MINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCE-GNAEIAEHAA 525
           + +S    +I +  + G +++A+     +P E +   + +++   G+ + G    + H  
Sbjct: 377 NRISVNNALIAMYSKCGNLRDAKTLFDTMP-EHNTVSYNSMIA--GYAQHGMGFQSLHLF 433

Query: 526 KRLLELDPLNAPAHVVLCNIYAA---SGRHVEEHKLRMDM 562
           +R+LE+D    P ++   ++ AA   +GR VE+ K+  +M
Sbjct: 434 QRMLEMD--FTPTNITFISVLAACAHTGR-VEDGKIYFNM 470



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 106/501 (21%), Positives = 203/501 (40%), Gaps = 118/501 (23%)

Query: 11  VVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPE 70
           V    + I+ Y+K  +++ A  LF  MPQ + VSYN +++ + + G    A +LF EM E
Sbjct: 74  VFSFNTLISAYAKESYVEVAHQLFDEMPQPDSVSYNTLIAAYARRGDTQPAFQLFLEMRE 133

Query: 71  RNV------VSWTAMICGLADAGRVCEARKLFEEMPERNVVS-WNSMVVGLIRNGELNEA 123
             +      +S     CG+ + G + +   L       + VS  N+++    +NG L EA
Sbjct: 134 AFLDMDGFTLSGIITACGI-NVGLIRQLHALSVVTGLDSYVSVGNALITSYSKNGFLKEA 192

Query: 124 RKVFNSMP-IKNVISWNAMIAGYVECCMMGEAIVLFEEMEER----NVVTWTSMISGYC- 177
           R++F+ +   ++ +SWN+M+  Y++     +A+ L+ EM  R    ++ T  S+++ +  
Sbjct: 193 RRIFHWLSEDRDEVSWNSMVVAYMQHREGSKALELYLEMTVRGLIVDIFTLASVLTAFTN 252

Query: 178 ----------RAGEVEEGY-------------------CL------FRRMPRKNVVSWTA 202
                      A  ++ GY                   C+      F  +   ++V W  
Sbjct: 253 VQDLLGGLQFHAKLIKSGYHQNSHVGSGLIDLYSKCGGCMLDCRKVFDEISNPDLVLWNT 312

Query: 203 MIGGFA-WNGFHKESLLLFIEMKGICDNGNNCN----VQSC------------------- 238
           MI G++ +     E+L  F +++G+    ++C+    + +C                   
Sbjct: 313 MISGYSLYEDLSDEALECFRQLQGVGHRPDDCSLVCVISACSNMSSPSQGRQVHGLALKL 372

Query: 239 ----------NSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYL 288
                     N++I  Y + G L +A+ LFDT+P  + +S+ SMI GY   G    + +L
Sbjct: 373 DIPSNRISVNNALIAMYSKCGNLRDAKTLFDTMPEHNTVSYNSMIAGYAQHGMGFQSLHL 432

Query: 289 FHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANI 348
           F  M + D                                 P N TF  +  A   T  +
Sbjct: 433 FQRMLEMD-------------------------------FTPTNITFISVLAACAHTGRV 461

Query: 349 DLGRQIHCVLMKTES--ESDLILENCLISMYAKCGVIDNAYNIFSNM-VSRDLVSWNSMV 405
           + G+ I+  +MK +   E +    +C+I +  + G +  A  +   +        W++++
Sbjct: 462 EDGK-IYFNMMKQKFGIEPEAGHFSCMIDLLGRAGKLSEAERLIETIPFDPGFFXWSALL 520

Query: 406 MGFSHHGLANETLKVFESMLE 426
                HG     +K    +L+
Sbjct: 521 GACRIHGNVELAIKAANRLLQ 541



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 50/195 (25%), Positives = 98/195 (50%), Gaps = 17/195 (8%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNV---- 73
           I  YSK G + +AK LF  MP+ N VSYN+M++G+ Q+G   ++  LF+ M E +     
Sbjct: 386 IAMYSKCGNLRDAKTLFDTMPEHNTVSYNSMIAGYAQHGMGFQSLHLFQRMLEMDFTPTN 445

Query: 74  VSWTAMICGLADAGRVCEARKLFEEMPERNVVS-----WNSMVVGLIRNGELNEARKVFN 128
           +++ +++   A  GRV + +  F  M ++  +      ++ M+  L R G+L+EA ++  
Sbjct: 446 ITFISVLAACAHTGRVEDGKIYFNMMKQKFGIEPEAGHFSCMIDLLGRAGKLSEAERLIE 505

Query: 129 SMPIK-NVISWNAM-----IAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEV 182
           ++P       W+A+     I G VE  +     +L  +++  N   +  + + Y   G +
Sbjct: 506 TIPFDPGFFXWSALLGACRIHGNVELAIKAANRLL--QLDPLNAAPYVMLANIYSDNGRL 563

Query: 183 EEGYCLFRRMPRKNV 197
           ++   + + M  + V
Sbjct: 564 QDAASVRKLMRDRGV 578



 Score = 47.0 bits (110), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 45/221 (20%), Positives = 85/221 (38%), Gaps = 44/221 (19%)

Query: 326 HGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKC----- 380
           H    L  +F        A  ++  G+ +H + +K+   +   L N  + +Y+KC     
Sbjct: 2   HHFSSLLHSFRQFLKTCIAHRDLRTGKSLHALYIKSFVPTSTYLSNHFLLLYSKCRRLSA 61

Query: 381 --------------------------GVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLA 414
                                       ++ A+ +F  M   D VS+N+++  ++  G  
Sbjct: 62  ARRVFDHTHDCNVFSFNTLISAYAKESYVEVAHQLFDEMPQPDSVSYNTLIAAYARRGDT 121

Query: 415 NETLKVFESMLESGTHPNSVTFLGILSACS-HAGLVSRGWELFNAMFDVYKIQPGPEHYV 473
               ++F  M E+    +  T  GI++AC  + GL+ +   L         +  G + YV
Sbjct: 122 QPAFQLFLEMREAFLDMDGFTLSGIITACGINVGLIRQLHAL--------SVVTGLDSYV 173

Query: 474 SMINLL----GRAGKIKEAEEFVLRLPFEPDHRIWGALLGA 510
           S+ N L     + G +KEA      L  + D   W +++ A
Sbjct: 174 SVGNALITSYSKNGFLKEARRIFHWLSEDRDEVSWNSMVVA 214


>gi|357440579|ref|XP_003590567.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355479615|gb|AES60818.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1212

 Score =  283 bits (725), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 188/635 (29%), Positives = 318/635 (50%), Gaps = 56/635 (8%)

Query: 18  ITKYSKRGFIDEAKALFQ--LMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVS 75
           I  Y+K G +  A+ LF   LM + + VS+N+++S  +  G   EA  LF  M E  V S
Sbjct: 190 IAMYAKCGDLGGARVLFDSGLMEKDDPVSWNSIISAHVGEGESLEALSLFRRMQEVGVES 249

Query: 76  WTAMICGLADAGRVCEA-------RKLFEEMPERN----VVSWNSMVVGLIRNGELNEAR 124
            T        A + CE        R +   + + N    V   N+++      G++ +A 
Sbjct: 250 NTYT---FVSALQACEGPTFIKIGRGIHAVILKSNHFTDVYVSNALIAMYANCGQMEDAE 306

Query: 125 KVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEER----NVVTWTSMISGYCRAG 180
           +VF SM  K+ +SWN +++G V+  M  +AI  F++M++     + V+  +MI+   R+ 
Sbjct: 307 RVFKSMLFKDCVSWNTLLSGMVQNDMYSDAINHFQDMQDSGQKPDQVSVLNMIAASGRSA 366

Query: 181 EVEEGY-----------------------------CL------FRRMPRKNVVSWTAMIG 205
            +  G                              C+      F  MP K+++SWT +I 
Sbjct: 367 NLLAGMEVHAYAIKHGIDSNMHIGNSLIDMYGKCCCVKYMGSAFEYMPEKDLISWTTIIA 426

Query: 206 GFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRD 265
           G+A N  H ++L L  +++    + +   + S     +G      ++E         + D
Sbjct: 427 GYAQNECHLDALNLLRKVQLEKMDVDPMMIGSILLACSGLKSEKLIKEIHGYVLKGGLAD 486

Query: 266 EISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRA 325
            +   ++++ Y  +  V  A ++F ++  +D V+WT+MI+  V N L +EA  LF  +  
Sbjct: 487 ILIQNAIVNVYGELALVDYARHVFESINSKDIVSWTSMITCCVHNGLAIEALELFNSLIE 546

Query: 326 HGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDN 385
             + P   T   +  AA A +++  G++IH  L++     + ++ N L+ MYA+CG ++N
Sbjct: 547 TNIEPDLITLVSVLYAAAALSSLKKGKEIHGFLIRKGFFLEGLIANSLVDMYARCGTMEN 606

Query: 386 AYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSH 445
           A NIF+ +  RDL+ W SM+     HG   + + +F  M +    P+ +TFL +L ACSH
Sbjct: 607 ARNIFNYVKQRDLILWTSMINANGMHGCGKDAIDLFSKMTDENVLPDHITFLALLYACSH 666

Query: 446 AGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWG 505
           +GLV  G + F  M + YK++P PEHY  +++LL R+  ++EA  FV  +P EP   +W 
Sbjct: 667 SGLVVEGKQHFEIMKNEYKLEPWPEHYACLVDLLARSNSLEEAYHFVRNMPIEPSAEVWC 726

Query: 506 ALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLK 565
           ALLGAC     N ++ E AAK+LL+L+  N+  +V++ N +AA GR  +  ++R  M   
Sbjct: 727 ALLGACRI-HSNNDLGEVAAKKLLQLNTENSGNYVLVSNTFAADGRWNDVEEVRSIMKGN 785

Query: 566 GVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEILL 600
            ++K PGCSW+     I  F++ DK   Q   I L
Sbjct: 786 KLKKKPGCSWIEVENKIHTFMARDKSHPQCNNIYL 820



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 148/586 (25%), Positives = 262/586 (44%), Gaps = 96/586 (16%)

Query: 15  TSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEM------ 68
           T  +  Y K G   +A  +F  M +R + ++NAM+   +  GR  EA  L++EM      
Sbjct: 86  TKFVHMYGKCGSFYDAVKVFDKMSERTIFTWNAMIGACVSAGRYVEAIELYKEMRVLGVS 145

Query: 69  ----------------PERNV---VSWTAMICG--------------LADAGRVCEARKL 95
                            ER +   +   A+ CG               A  G +  AR L
Sbjct: 146 LDAFTFPCVLKACGAFKERRLGCEIHGVAVKCGYGGFVFVCNALIAMYAKCGDLGGARVL 205

Query: 96  FEE--MPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECC---- 149
           F+   M + + VSWNS++   +  GE  EA  +F  M    V S        ++ C    
Sbjct: 206 FDSGLMEKDDPVSWNSIISAHVGEGESLEALSLFRRMQEVGVESNTYTFVSALQACEGPT 265

Query: 150 --MMGEAI--VLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIG 205
              +G  I  V+ +     +V    ++I+ Y   G++E+   +F+ M  K+ VSW  ++ 
Sbjct: 266 FIKIGRGIHAVILKSNHFTDVYVSNALIAMYANCGQMEDAERVFKSMLFKDCVSWNTLLS 325

Query: 206 GFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRD 265
           G   N  + +++  F +M+   D+G   +  S  +MI    R   L     +     ++ 
Sbjct: 326 GMVQNDMYSDAINHFQDMQ---DSGQKPDQVSVLNMIAASGRSANLLAGMEVH-AYAIKH 381

Query: 266 EIS-----WTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLF 320
            I        S+ID Y     V      F  MP++D ++WT +I+G  QNE  ++A  L 
Sbjct: 382 GIDSNMHIGNSLIDMYGKCCCVKYMGSAFEYMPEKDLISWTTIIAGYAQNECHLDALNLL 441

Query: 321 --MEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYA 378
             +++    V P+    S+L   +G  +   L ++IH  ++K    +D++++N ++++Y 
Sbjct: 442 RKVQLEKMDVDPM-MIGSILLACSGLKSE-KLIKEIHGYVLKG-GLADILIQNAIVNVYG 498

Query: 379 KCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLG 438
           +  ++D A ++F ++ S+D+VSW SM+    H+GLA E L++F S++E+   P+ +T + 
Sbjct: 499 ELALVDYARHVFESINSKDIVSWTSMITCCVHNGLAIEALELFNSLIETNIEPDLITLVS 558

Query: 439 ILSACS-----------HAGLVSRGWEL----FNAMFDVYKIQPGPEH------------ 471
           +L A +           H  L+ +G+ L     N++ D+Y      E+            
Sbjct: 559 VLYAAAALSSLKKGKEIHGFLIRKGFFLEGLIANSLVDMYARCGTMENARNIFNYVKQRD 618

Query: 472 ---YVSMINLLGRAGKIKEAEEFVLRLPFE---PDHRIWGALLGAC 511
              + SMIN  G  G  K+A +   ++  E   PDH  + ALL AC
Sbjct: 619 LILWTSMINANGMHGCGKDAIDLFSKMTDENVLPDHITFLALLYAC 664



 Score =  122 bits (306), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 109/420 (25%), Positives = 187/420 (44%), Gaps = 50/420 (11%)

Query: 145 YVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMI 204
           Y +C    +A+ +F++M ER + TW +MI     AG   E   L++ M R   VS  A  
Sbjct: 92  YGKCGSFYDAVKVFDKMSERTIFTWNAMIGACVSAGRYVEAIELYKEM-RVLGVSLDAFT 150

Query: 205 GGFAWN--GFHKESLLLFIEMKGI---CDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFD 259
                   G  KE  L   E+ G+   C  G    V  CN++I  Y + G L  A+ LFD
Sbjct: 151 FPCVLKACGAFKERRL-GCEIHGVAVKCGYGGFVFV--CNALIAMYAKCGDLGGARVLFD 207

Query: 260 TVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYL 319
           +                               M   D V+W ++IS  V     +EA  L
Sbjct: 208 SGL-----------------------------MEKDDPVSWNSIISAHVGEGESLEALSL 238

Query: 320 FMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAK 379
           F  M+  GV     TF     A      I +GR IH V++K+   +D+ + N LI+MYA 
Sbjct: 239 FRRMQEVGVESNTYTFVSALQACEGPTFIKIGRGIHAVILKSNHFTDVYVSNALIAMYAN 298

Query: 380 CGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGI 439
           CG +++A  +F +M+ +D VSWN+++ G   + + ++ +  F+ M +SG  P+ V+ L +
Sbjct: 299 CGQMEDAERVFKSMLFKDCVSWNTLLSGMVQNDMYSDAINHFQDMQDSGQKPDQVSVLNM 358

Query: 440 LSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYV----SMINLLGRAGKIKEAEEFVLRL 495
           ++A   +  +  G E+       Y I+ G +  +    S+I++ G+   +K        +
Sbjct: 359 IAASGRSANLLAGMEVH-----AYAIKHGIDSNMHIGNSLIDMYGKCCCVKYMGSAFEYM 413

Query: 496 PFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEE 555
           P E D   W  ++   G+ +    +      R ++L+ ++    ++   + A SG   E+
Sbjct: 414 P-EKDLISWTTIIA--GYAQNECHLDALNLLRKVQLEKMDVDPMMIGSILLACSGLKSEK 470



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 92/304 (30%), Positives = 135/304 (44%), Gaps = 18/304 (5%)

Query: 253 EAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNEL 312
           + QN  D+V +      T  +  Y   G   +A  +F  M +R    W AMI   V    
Sbjct: 74  KTQNYLDSVFLD-----TKFVHMYGKCGSFYDAVKVFDKMSERTIFTWNAMIGACVSAGR 128

Query: 313 FVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENC 372
           +VEA  L+ EMR  GV     TF  +  A GA     LG +IH V +K      + + N 
Sbjct: 129 YVEAIELYKEMRVLGVSLDAFTFPCVLKACGAFKERRLGCEIHGVAVKCGYGGFVFVCNA 188

Query: 373 LISMYAKCGVIDNAYNIFSN--MVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTH 430
           LI+MYAKCG +  A  +F +  M   D VSWNS++      G + E L +F  M E G  
Sbjct: 189 LIAMYAKCGDLGGARVLFDSGLMEKDDPVSWNSIISAHVGEGESLEALSLFRRMQEVGVE 248

Query: 431 PNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVS--MINLLGRAGKIKEA 488
            N+ TF+  L AC     +  G  +      + K     + YVS  +I +    G++++A
Sbjct: 249 SNTYTFVSALQACEGPTFIKIGRGIHAV---ILKSNHFTDVYVSNALIAMYANCGQMEDA 305

Query: 489 EEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLEL-DPLNAPAHVVLCNIYA 547
           E     + F+ D   W  LL   G  +   ++   A     ++ D    P  V + N+ A
Sbjct: 306 ERVFKSMLFK-DCVSWNTLLS--GMVQN--DMYSDAINHFQDMQDSGQKPDQVSVLNMIA 360

Query: 548 ASGR 551
           ASGR
Sbjct: 361 ASGR 364



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 35/136 (25%), Positives = 63/136 (46%), Gaps = 2/136 (1%)

Query: 310 NELFVEATYLFME-MRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESD-L 367
            E F   T+ F + +      PL   +S       +   +  G+Q+H   +KT++  D +
Sbjct: 23  KEAFQSLTHFFTDPLPTTTRFPLQQAYSQALELCASHKALPQGQQLHAHFLKTQNYLDSV 82

Query: 368 ILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLES 427
            L+   + MY KCG   +A  +F  M  R + +WN+M+      G   E +++++ M   
Sbjct: 83  FLDTKFVHMYGKCGSFYDAVKVFDKMSERTIFTWNAMIGACVSAGRYVEAIELYKEMRVL 142

Query: 428 GTHPNSVTFLGILSAC 443
           G   ++ TF  +L AC
Sbjct: 143 GVSLDAFTFPCVLKAC 158


>gi|357111956|ref|XP_003557776.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Brachypodium distachyon]
          Length = 747

 Score =  283 bits (724), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 164/518 (31%), Positives = 277/518 (53%), Gaps = 18/518 (3%)

Query: 87  GRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYV 146
           GR+ EA K+F+EM ER+V +WN+M+ GL RN    EA  +F  M  + V      ++  +
Sbjct: 117 GRISEAYKVFDEMSERDVPAWNAMLSGLCRNARAAEAVGLFGRMVGEGVAGDTVTVSSVL 176

Query: 147 E-CCMMGEAIVLF-------EEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVV 198
             C ++G+ ++         +   ++ +    ++I  Y + G +EE  C+F  M  +++V
Sbjct: 177 PMCVLLGDQVLALVMHVYAVKHGLDKELFVCNALIDVYGKLGMLEEAQCVFHGMECRDLV 236

Query: 199 SWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLF 258
           +W ++I G    G    +L +F  M+G   +G + +V +  S+ +   + G    A++L 
Sbjct: 237 TWNSIISGCEQRGQTAAALKMFQGMRG---SGVSPDVLTLVSLASAIAQGGDGRSAKSLH 293

Query: 259 DTV-----PVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELF 313
             V      V D I+  +++D Y  +  +  A  +F +MP +D+V+W  +I+G +QN L 
Sbjct: 294 CYVMRRGWDVDDIIAGNAIVDMYAKLSNIEAAQRMFDSMPVQDSVSWNTLITGYMQNGLA 353

Query: 314 VEATYLFMEMRAH-GVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENC 372
            EA   +  M+ H G+  +  TF  +  A      +  G ++H + +K     D+ +  C
Sbjct: 354 NEAVERYGHMQKHEGLKAIQGTFVSVLPAYSHLGALQQGMRMHALSIKIGLNVDVYVGTC 413

Query: 373 LISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPN 432
           LI +YAKCG +  A  +F  M  R    WN+++ G   HG   E L +F  M + G  P+
Sbjct: 414 LIDLYAKCGKLAEAMLLFEKMPRRSTGPWNAIISGLGVHGHGAEALTLFSRMQQEGIKPD 473

Query: 433 SVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFV 492
            VTF+ +L+ACSHAGLV +G   F+ M   Y I P  +HY  M ++LGRAG++ EA  F+
Sbjct: 474 HVTFVSLLAACSHAGLVDQGRSFFDVMQVTYDIVPIAKHYACMADMLGRAGQLDEAFNFI 533

Query: 493 LRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRH 552
             +P +PD  +WGALLGAC    GN E+ + A++ L ELDP N   +V++ N+YA  G+ 
Sbjct: 534 QNMPIKPDSAVWGALLGACRI-HGNVEMGKVASQNLFELDPENVGYYVLMSNMYAKVGKW 592

Query: 553 VEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDK 590
               ++R  +  + ++K PG S +     + +F SG++
Sbjct: 593 DGVDEVRSLVRRQNLQKTPGWSSIEVKRSVNVFYSGNQ 630



 Score =  131 bits (330), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 114/452 (25%), Positives = 186/452 (41%), Gaps = 58/452 (12%)

Query: 16  SSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVS 75
           S +  Y + G I EA  +F  M +R+V ++NAMLSG  +N R +EA  LF  M    V  
Sbjct: 108 SLVHAYLRFGRISEAYKVFDEMSERDVPAWNAMLSGLCRNARAAEAVGLFGRMVGEGVAG 167

Query: 76  WTAMIC-------------------------GLADAGRVC--------------EARKLF 96
            T  +                          GL     VC              EA+ +F
Sbjct: 168 DTVTVSSVLPMCVLLGDQVLALVMHVYAVKHGLDKELFVCNALIDVYGKLGMLEEAQCVF 227

Query: 97  EEMPERNVVSWNSMVVGLIRNGELNEARKVFNSM-------PIKNVISWNAMIA--GYVE 147
             M  R++V+WNS++ G  + G+   A K+F  M        +  ++S  + IA  G   
Sbjct: 228 HGMECRDLVTWNSIISGCEQRGQTAAALKMFQGMRGSGVSPDVLTLVSLASAIAQGGDGR 287

Query: 148 CCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGF 207
                   V+    +  +++   +++  Y +   +E    +F  MP ++ VSW  +I G+
Sbjct: 288 SAKSLHCYVMRRGWDVDDIIAGNAIVDMYAKLSNIEAAQRMFDSMPVQDSVSWNTLITGY 347

Query: 208 AWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVR--- 264
             NG   E++  +  M+     G      +  S++  Y   G L++   +   + ++   
Sbjct: 348 MQNGLANEAVERYGHMQK--HEGLKAIQGTFVSVLPAYSHLGALQQGMRMH-ALSIKIGL 404

Query: 265 --DEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFME 322
             D    T +ID Y   G+++ A  LF  MP R    W A+ISGL  +    EA  LF  
Sbjct: 405 NVDVYVGTCLIDLYAKCGKLAEAMLLFEKMPRRSTGPWNAIISGLGVHGHGAEALTLFSR 464

Query: 323 MRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILE-NCLISMYAKCG 381
           M+  G+ P + TF  L  A      +D GR    V+  T     +     C+  M  + G
Sbjct: 465 MQQEGIKPDHVTFVSLLAACSHAGLVDQGRSFFDVMQVTYDIVPIAKHYACMADMLGRAG 524

Query: 382 VIDNAYNIFSNM-VSRDLVSWNSMVMGFSHHG 412
            +D A+N   NM +  D   W +++     HG
Sbjct: 525 QLDEAFNFIQNMPIKPDSAVWGALLGACRIHG 556



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 68/209 (32%), Positives = 104/209 (49%), Gaps = 16/209 (7%)

Query: 271 SMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPP 330
           S++  YL  G++S AY +F  M +RD  AW AM+SGL +N    EA  LF  M   GV  
Sbjct: 108 SLVHAYLRFGRISEAYKVFDEMSERDVPAWNAMLSGLCRNARAAEAVGLFGRMVGEGVAG 167

Query: 331 LNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIF 390
              T S +        +  L   +H   +K   + +L + N LI +Y K G+++ A  +F
Sbjct: 168 DTVTVSSVLPMCVLLGDQVLALVMHVYAVKHGLDKELFVCNALIDVYGKLGMLEEAQCVF 227

Query: 391 SNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAG--- 447
             M  RDLV+WNS++ G    G     LK+F+ M  SG  P+ +T + + SA +  G   
Sbjct: 228 HGMECRDLVTWNSIISGCEQRGQTAAALKMFQGMRGSGVSPDVLTLVSLASAIAQGGDGR 287

Query: 448 --------LVSRGWEL-----FNAMFDVY 463
                   ++ RGW++      NA+ D+Y
Sbjct: 288 SAKSLHCYVMRRGWDVDDIIAGNAIVDMY 316



 Score = 62.4 bits (150), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 80/170 (47%), Gaps = 13/170 (7%)

Query: 325 AHGVPPLNATFSVLFGAAGATANIDLGRQIH-CVLMKTESESDLILENCLISMYAKCGVI 383
           A+   P   TF  L  AA + A+     Q+H C L        +     L+  Y + G I
Sbjct: 63  AYPFRPDGFTFPSLIRAAPSNAS---AAQLHACALRLGLVRPSVFTSGSLVHAYLRFGRI 119

Query: 384 DNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSAC 443
             AY +F  M  RD+ +WN+M+ G   +  A E + +F  M+  G   ++VT   +L  C
Sbjct: 120 SEAYKVFDEMSERDVPAWNAMLSGLCRNARAAEAVGLFGRMVGEGVAGDTVTVSSVLPMC 179

Query: 444 SHAGLVSRGWELFNAMFDVYKIQPG--PEHYV--SMINLLGRAGKIKEAE 489
                V  G ++   +  VY ++ G   E +V  ++I++ G+ G ++EA+
Sbjct: 180 -----VLLGDQVLALVMHVYAVKHGLDKELFVCNALIDVYGKLGMLEEAQ 224



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 53/220 (24%), Positives = 91/220 (41%), Gaps = 35/220 (15%)

Query: 1   MSERNHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQ--RNVVSY--NAMLSGFLQNG 56
           M +    K++     S +  YS  G + +   +  L  +   NV  Y    ++  + + G
Sbjct: 363 MQKHEGLKAIQGTFVSVLPAYSHLGALQQGMRMHALSIKIGLNVDVYVGTCLIDLYAKCG 422

Query: 57  RLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNV----VSWNSMVV 112
           +L+EA  LFE+MP R+   W A+I GL   G   EA  LF  M +  +    V++ S++ 
Sbjct: 423 KLAEAMLLFEKMPRRSTGPWNAIISGLGVHGHGAEALTLFSRMQQEGIKPDHVTFVSLLA 482

Query: 113 GLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSM 172
                G +++ R  F+ M +   I     IA +  C                       M
Sbjct: 483 ACSHAGLVDQGRSFFDVMQVTYDI---VPIAKHYAC-----------------------M 516

Query: 173 ISGYCRAGEVEEGYCLFRRMPRK-NVVSWTAMIGGFAWNG 211
                RAG+++E +   + MP K +   W A++G    +G
Sbjct: 517 ADMLGRAGQLDEAFNFIQNMPIKPDSAVWGALLGACRIHG 556


>gi|297819536|ref|XP_002877651.1| hypothetical protein ARALYDRAFT_485272 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297323489|gb|EFH53910.1| hypothetical protein ARALYDRAFT_485272 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1217

 Score =  283 bits (724), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 173/524 (33%), Positives = 265/524 (50%), Gaps = 53/524 (10%)

Query: 89  VCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVEC 148
           V  ARK+F+E+PERNV+  N M+   + NG   E  +VF +M   +V   +      ++ 
Sbjct: 91  VATARKVFDEIPERNVIIINVMIRSYVNNGFYREGIQVFGTMCSCHVKPDHYTFPCVLKA 150

Query: 149 CMMGEAIVLFEEME--------ERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSW 200
           C     IV+ +++            +     ++S Y + G + E   +   M R++VVSW
Sbjct: 151 CSCSGNIVIGKKIHGSATKVGLSSTLFVGNGLVSMYGKCGFLSEARLVLDEMSRRDVVSW 210

Query: 201 TAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNL--- 257
                                                 NS++ GY +  R ++A  +   
Sbjct: 211 --------------------------------------NSLVAGYAQNQRFDDALEVCRE 232

Query: 258 FDTVPVRDEISWTSMIDGYLSVGQVSNAYY---LFHNMPDRDAVAWTAMISGLVQNELFV 314
            ++V +  +    + +   +S     N  Y   +F  M  +  V+W  MI   ++N + V
Sbjct: 233 MESVKISHDAGTMASLLPAVSNTTTENVMYVKDMFFKMGKKSLVSWNVMIGVYMKNAMPV 292

Query: 315 EATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLI 374
           EA  L+  M A G  P   + + +  A G T+ + LG++IH  + + +   +L+LEN LI
Sbjct: 293 EAVELYSGMEADGFEPDAVSITSVLPACGDTSALSLGKKIHGYIERKKLIPNLLLENALI 352

Query: 375 SMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSV 434
            MYAKCG +D A ++F NM SRD+VSW +M+  +   G   + + +F  M +SG  P+S+
Sbjct: 353 DMYAKCGCLDRARDVFENMKSRDVVSWTAMISAYGFSGRGCDAVALFSKMQDSGLVPDSI 412

Query: 435 TFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLR 494
            F+  L+ACSHAGL+  G   F  M D YKI P  EH   M++LLGRAGK+KEA +F+  
Sbjct: 413 AFVTTLAACSHAGLLEEGRSCFKLMTDHYKITPRLEHLACMVDLLGRAGKVKEAYKFIQE 472

Query: 495 LPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVE 554
           +P EP+ R+WGALLGAC     N +I   AA +L +L P  +  +V+L NIYA +GR  E
Sbjct: 473 MPMEPNERVWGALLGACRV-HSNTDIGLLAADKLFQLAPEQSGYYVLLSNIYAKAGRWEE 531

Query: 555 EHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
              +R  M  KG++K PG S +  N  I  FL GD+   Q AEI
Sbjct: 532 VTNIRNIMKSKGLKKNPGASNVEVNRIIHTFLVGDRSHPQSAEI 575



 Score =  108 bits (271), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 97/404 (24%), Positives = 172/404 (42%), Gaps = 46/404 (11%)

Query: 21  YSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEM------PERNVV 74
           Y+    +  A+ +F  +P+RNV+  N M+  ++ NG   E  ++F  M      P+    
Sbjct: 85  YASLKDVATARKVFDEIPERNVIIINVMIRSYVNNGFYREGIQVFGTMCSCHVKPDHYTF 144

Query: 75  SWTAMICGLADAGRVCEARKLFEEMPERNVVSW----NSMVVGLIRNGELNEARKVFNSM 130
                 C    +G +   +K+     +  + S     N +V    + G L+EAR V + M
Sbjct: 145 PCVLKACSC--SGNIVIGKKIHGSATKVGLSSTLFVGNGLVSMYGKCGFLSEARLVLDEM 202

Query: 131 PIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVV----TWTSMISGYCRAGEVEEGY 186
             ++V+SWN+++AGY +     +A+ +  EME   +     T  S++            Y
Sbjct: 203 SRRDVVSWNSLVAGYAQNQRFDDALEVCREMESVKISHDAGTMASLLPAVSNTTTENVMY 262

Query: 187 C--LFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLF------------IEMKGICDNGNN 232
              +F +M +K++VSW  MIG +  N    E++ L+            + +  +     +
Sbjct: 263 VKDMFFKMGKKSLVSWNVMIGVYMKNAMPVEAVELYSGMEADGFEPDAVSITSVLPACGD 322

Query: 233 CNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNM 292
            +  S    I+GYI   +L           + + +   ++ID Y   G +  A  +F NM
Sbjct: 323 TSALSLGKKIHGYIERKKL-----------IPNLLLENALIDMYAKCGCLDRARDVFENM 371

Query: 293 PDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGR 352
             RD V+WTAMIS    +    +A  LF +M+  G+ P +  F     A      ++ GR
Sbjct: 372 KSRDVVSWTAMISAYGFSGRGCDAVALFSKMQDSGLVPDSIAFVTTLAACSHAGLLEEGR 431

Query: 353 QIHCV-LMKTESESDLILEN--CLISMYAKCGVIDNAYNIFSNM 393
              C  LM    +    LE+  C++ +  + G +  AY     M
Sbjct: 432 S--CFKLMTDHYKITPRLEHLACMVDLLGRAGKVKEAYKFIQEM 473



 Score = 96.3 bits (238), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 71/247 (28%), Positives = 113/247 (45%), Gaps = 12/247 (4%)

Query: 272 MIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPL 331
           ++  Y S+  V+ A  +F  +P+R+ +    MI   V N  + E   +F  M +  V P 
Sbjct: 81  LMRAYASLKDVATARKVFDEIPERNVIIINVMIRSYVNNGFYREGIQVFGTMCSCHVKPD 140

Query: 332 NATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFS 391
           + TF  +  A   + NI +G++IH    K    S L + N L+SMY KCG +  A  +  
Sbjct: 141 HYTFPCVLKACSCSGNIVIGKKIHGSATKVGLSSTLFVGNGLVSMYGKCGFLSEARLVLD 200

Query: 392 NMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSR 451
            M  RD+VSWNS+V G++ +   ++ L+V   M       ++ T   +L A S+    + 
Sbjct: 201 EMSRRDVVSWNSLVAGYAQNQRFDDALEVCREMESVKISHDAGTMASLLPAVSNT--TTE 258

Query: 452 GWELFNAMFDVYKIQPGPEHYVS---MINLLGRAGKIKEAEEFVLRLP---FEPDHRIWG 505
                  MF     + G +  VS   MI +  +     EA E    +    FEPD     
Sbjct: 259 NVMYVKDMF----FKMGKKSLVSWNVMIGVYMKNAMPVEAVELYSGMEADGFEPDAVSIT 314

Query: 506 ALLGACG 512
           ++L ACG
Sbjct: 315 SVLPACG 321



 Score = 92.8 bits (229), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 75/307 (24%), Positives = 145/307 (47%), Gaps = 23/307 (7%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWT 77
           ++ Y K GF+ EA+ +   M +R+VVS+N++++G+ QN R  +A  +  EM    +    
Sbjct: 183 VSMYGKCGFLSEARLVLDEMSRRDVVSWNSLVAGYAQNQRFDDALEVCREMESVKISHDA 242

Query: 78  AMICGLADA------GRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMP 131
             +  L  A        V   + +F +M ++++VSWN M+   ++N    EA ++++ M 
Sbjct: 243 GTMASLLPAVSNTTTENVMYVKDMFFKMGKKSLVSWNVMIGVYMKNAMPVEAVELYSGME 302

Query: 132 IKNVISWNAMIAGYVECCMMGEAIVLFEEME---ER-----NVVTWTSMISGYCRAGEVE 183
                     I   +  C    A+ L +++    ER     N++   ++I  Y + G ++
Sbjct: 303 ADGFEPDAVSITSVLPACGDTSALSLGKKIHGYIERKKLIPNLLLENALIDMYAKCGCLD 362

Query: 184 EGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMIN 243
               +F  M  ++VVSWTAMI  + ++G   +++ LF +M+   D+G   +  +  + + 
Sbjct: 363 RARDVFENMKSRDVVSWTAMISAYGFSGRGCDAVALFSKMQ---DSGLVPDSIAFVTTLA 419

Query: 244 GYIRFGRLEEAQNLFDTVPVRDEIS-----WTSMIDGYLSVGQVSNAYYLFHNMP-DRDA 297
                G LEE ++ F  +    +I+        M+D     G+V  AY     MP + + 
Sbjct: 420 ACSHAGLLEEGRSCFKLMTDHYKITPRLEHLACMVDLLGRAGKVKEAYKFIQEMPMEPNE 479

Query: 298 VAWTAMI 304
             W A++
Sbjct: 480 RVWGALL 486



 Score = 62.4 bits (150), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 52/187 (27%), Positives = 82/187 (43%), Gaps = 37/187 (19%)

Query: 25  GFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLA 84
           G+I+  K    L+P  N++  NA++  + + G L  AR +FE M  R+VVSWTAMI    
Sbjct: 334 GYIERKK----LIP--NLLLENALIDMYAKCGCLDRARDVFENMKSRDVVSWTAMISAYG 387

Query: 85  DAGRVCEARKLFEEMPERNVV----SWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNA 140
            +GR C+A  LF +M +  +V    ++ + +      G L E R  F             
Sbjct: 388 FSGRGCDAVALFSKMQDSGLVPDSIAFVTTLAACSHAGLLEEGRSCFK------------ 435

Query: 141 MIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMP-RKNVVS 199
                    +M +   +   +E         M+    RAG+V+E Y   + MP   N   
Sbjct: 436 ---------LMTDHYKITPRLEH-----LACMVDLLGRAGKVKEAYKFIQEMPMEPNERV 481

Query: 200 WTAMIGG 206
           W A++G 
Sbjct: 482 WGALLGA 488



 Score = 44.7 bits (104), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 36/160 (22%), Positives = 72/160 (45%), Gaps = 6/160 (3%)

Query: 352 RQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHH 411
           R +H  ++  +   +  L   L+  YA    +  A  +F  +  R+++  N M+  + ++
Sbjct: 60  RTVHSRIISEDLRYNSSLGVKLMRAYASLKDVATARKVFDEIPERNVIIINVMIRSYVNN 119

Query: 412 GLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEH 471
           G   E ++VF +M      P+  TF  +L ACS +G +  G ++  +     K+      
Sbjct: 120 GFYREGIQVFGTMCSCHVKPDHYTFPCVLKACSCSGNIVIGKKIHGS---ATKVGLSSTL 176

Query: 472 YV--SMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLG 509
           +V   ++++ G+ G + EA   VL      D   W +L+ 
Sbjct: 177 FVGNGLVSMYGKCGFLSEA-RLVLDEMSRRDVVSWNSLVA 215


>gi|15226150|ref|NP_180924.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75101011|sp|P93005.1|PP181_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g33680
 gi|1707007|gb|AAC69139.1| hypothetical protein [Arabidopsis thaliana]
 gi|330253774|gb|AEC08868.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 727

 Score =  283 bits (724), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 185/652 (28%), Positives = 321/652 (49%), Gaps = 64/652 (9%)

Query: 4   RNHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEAR- 62
           R    + + H    +  Y+K G + +A ++F  +  ++VVS+N++++G+ QNG +S +  
Sbjct: 42  RTGASTCIQHANVLVNFYAKCGKLAKAHSIFNAIICKDVVSWNSLITGYSQNGGISSSYT 101

Query: 63  --RLFEEMPERNVVSWTAMICGLADA---------GRVCEARKLFEEMPERNVVSWNSMV 111
             +LF EM  ++++     + G+  A         GR  +A  L  +M     +  ++ +
Sbjct: 102 VMQLFREMRAQDILPNAYTLAGIFKAESSLQSSTVGR--QAHALVVKMSSFGDIYVDTSL 159

Query: 112 VGLI-RNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLF----EEMEERN- 165
           VG+  + G + +  KVF  MP +N  +W+ M++GY     + EAI +F     E EE + 
Sbjct: 160 VGMYCKAGLVEDGLKVFAYMPERNTYTWSTMVSGYATRGRVEEAIKVFNLFLREKEEGSD 219

Query: 166 ------------------------------------VVTWTSMISGYCRAGEVEEGYCLF 189
                                               V    ++++ Y +   + E   +F
Sbjct: 220 SDYVFTAVLSSLAATIYVGLGRQIHCITIKNGLLGFVALSNALVTMYSKCESLNEACKMF 279

Query: 190 RRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFG 249
                +N ++W+AM+ G++ NG   E++ LF  M      G   +  +   ++N      
Sbjct: 280 DSSGDRNSITWSAMVTGYSQNGESLEAVKLFSRM---FSAGIKPSEYTIVGVLNACSDIC 336

Query: 250 RLEEAQNLFDTVPV----RDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMIS 305
            LEE + L   +      R   + T+++D Y   G +++A   F  + +RD   WT++IS
Sbjct: 337 YLEEGKQLHSFLLKLGFERHLFATTALVDMYAKAGCLADARKGFDCLQERDVALWTSLIS 396

Query: 306 GLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESES 365
           G VQN    EA  L+  M+  G+ P + T + +  A  + A ++LG+Q+H   +K     
Sbjct: 397 GYVQNSDNEEALILYRRMKTAGIIPNDPTMASVLKACSSLATLELGKQVHGHTIKHGFGL 456

Query: 366 DLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESML 425
           ++ + + L +MY+KCG +++   +F    ++D+VSWN+M+ G SH+G  +E L++FE ML
Sbjct: 457 EVPIGSALSTMYSKCGSLEDGNLVFRRTPNKDVVSWNAMISGLSHNGQGDEALELFEEML 516

Query: 426 ESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKI 485
             G  P+ VTF+ I+SACSH G V RGW  FN M D   + P  +HY  M++LL RAG++
Sbjct: 517 AEGMEPDDVTFVNIISACSHKGFVERGWFYFNMMSDQIGLDPKVDHYACMVDLLSRAGQL 576

Query: 486 KEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNI 545
           KEA+EF+     +    +W  LL AC    G  E+  +A ++L+ L    +  +V L  I
Sbjct: 577 KEAKEFIESANIDHGLCLWRILLSACK-NHGKCELGVYAGEKLMALGSRESSTYVQLSGI 635

Query: 546 YAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAE 597
           Y A GR  +  ++   M   GV K  GCSW+       +F+ GD +   + E
Sbjct: 636 YTALGRMRDVERVWKHMRANGVSKEVGCSWIELKNQYHVFVVGDTMHPMIEE 687



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 63/233 (27%), Positives = 114/233 (48%), Gaps = 32/233 (13%)

Query: 226 ICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNA 285
           I   G +  +Q  N ++N Y + G+L +A ++F+ +  +D +SW S+I GY   G +S++
Sbjct: 40  IIRTGASTCIQHANVLVNFYAKCGKLAKAHSIFNAIICKDVVSWNSLITGYSQNGGISSS 99

Query: 286 YYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGAT 345
           Y +                              LF EMRA  + P   T + +F A  + 
Sbjct: 100 YTVMQ----------------------------LFREMRAQDILPNAYTLAGIFKAESSL 131

Query: 346 ANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMV 405
            +  +GRQ H +++K  S  D+ ++  L+ MY K G++++   +F+ M  R+  +W++MV
Sbjct: 132 QSSTVGRQAHALVVKMSSFGDIYVDTSLVGMYCKAGLVEDGLKVFAYMPERNTYTWSTMV 191

Query: 406 MGFSHHGLANETLKVFESML---ESGTHPNSVTFLGILSACSHAGLVSRGWEL 455
            G++  G   E +KVF   L   E G+  + V F  +LS+ +    V  G ++
Sbjct: 192 SGYATRGRVEEAIKVFNLFLREKEEGSDSDYV-FTAVLSSLAATIYVGLGRQI 243



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 45/167 (26%), Positives = 89/167 (53%), Gaps = 9/167 (5%)

Query: 347 NIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVM 406
           N+  GR +H  +++T + + +   N L++ YAKCG +  A++IF+ ++ +D+VSWNS++ 
Sbjct: 29  NLVAGRAVHGQIIRTGASTCIQHANVLVNFYAKCGKLAKAHSIFNAIICKDVVSWNSLIT 88

Query: 407 GFSHHGLANET---LKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVY 463
           G+S +G  + +   +++F  M      PN+ T  GI  A S     + G +   A   V 
Sbjct: 89  GYSQNGGISSSYTVMQLFREMRAQDILPNAYTLAGIFKAESSLQSSTVGRQ---AHALVV 145

Query: 464 KIQPGPEHYV--SMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALL 508
           K+    + YV  S++ +  +AG +++  +    +P E +   W  ++
Sbjct: 146 KMSSFGDIYVDTSLVGMYCKAGLVEDGLKVFAYMP-ERNTYTWSTMV 191


>gi|357141789|ref|XP_003572348.1| PREDICTED: pentatricopeptide repeat-containing protein At2g45350,
           chloroplastic-like [Brachypodium distachyon]
          Length = 555

 Score =  283 bits (724), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 153/417 (36%), Positives = 236/417 (56%), Gaps = 9/417 (2%)

Query: 165 NVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMK 224
           ++VTW +M+ GY + GE+ E   +F +MP++N VSW+AM+G +A  G    +  +F EM 
Sbjct: 145 DLVTWNTMLGGYVKCGEIGEARRVFEQMPQRNGVSWSAMVGAYAGAGELDVAREMFDEMP 204

Query: 225 GICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSN 284
            I       NV S NSMI G+ R G L  A+ +FD +PVR+ +SW +M+ GY   G++++
Sbjct: 205 AI-----GRNVVSWNSMITGFARHGLLPLARKMFDEMPVRNLVSWNTMVRGYAVNGEMND 259

Query: 285 AYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHG-VPPLNATFSVLFGAAG 343
           A  LF  MP++D V+WT MISG  Q   + E   LF  M++   V P   T   +  A  
Sbjct: 260 ARELFDRMPEKDVVSWTCMISGYAQARCYTETLELFRAMQSESNVLPNEVTMVSVLSACA 319

Query: 344 ATANIDLGRQIHCVLMKTES--ESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSW 401
               ++ GR  H  + K +   +S+  L   LI MY+KCG  D A  IF ++  +++ +W
Sbjct: 320 HLTALEEGRWAHAFIDKHKMVLDSEFNLGAALIDMYSKCGRTDLAVKIFHSLDQKNVSAW 379

Query: 402 NSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFD 461
           N+++ G + +G    ++ VFE M  SG  PN +TF+G+L+AC+H GLV  G   F +M  
Sbjct: 380 NALITGLAVNGDVRSSIDVFEQMRRSGEKPNGITFVGVLTACAHGGLVDEGRRCFQSMAS 439

Query: 462 VYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIA 521
              +QP  +HY  M+++LGRAG ++EAEE +  +P  PD  I GALLGAC       ++A
Sbjct: 440 TCGVQPEAKHYGCMVDMLGRAGLLEEAEELIRSMPMVPDVMILGALLGACRM-HKRVDVA 498

Query: 522 EHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMR 578
                 +L L    +  HV++ +IYAA+G+  +    R  +   G+ K+ G S  M+
Sbjct: 499 ARVQNEILGLSTQQSGCHVLISDIYAAAGKWADALYARGVLQKFGISKLRGSSRSMQ 555



 Score =  184 bits (468), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 118/362 (32%), Positives = 186/362 (51%), Gaps = 42/362 (11%)

Query: 41  NVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMP 100
           ++V++N ML G+++ G + EARR+FE+MP+RN VSW+AM+   A AG +  AR++F+EMP
Sbjct: 145 DLVTWNTMLGGYVKCGEIGEARRVFEQMPQRNGVSWSAMVGAYAGAGELDVAREMFDEMP 204

Query: 101 E--RNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLF 158
              RNVVSWNSM+ G  R+G L  ARK+F+ MP++N++SWN M+ GY     M +A  LF
Sbjct: 205 AIGRNVVSWNSMITGFARHGLLPLARKMFDEMPVRNLVSWNTMVRGYAVNGEMNDARELF 264

Query: 159 EEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLL 218
           + M E++VV+WT MISGY +A    E   LFR M                      ES +
Sbjct: 265 DRMPEKDVVSWTCMISGYAQARCYTETLELFRAM--------------------QSESNV 304

Query: 219 LFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEE---AQNLFDTVPVRDEISW---TSM 272
           L  E+  +             S+++       LEE   A    D   +  +  +    ++
Sbjct: 305 LPNEVTMV-------------SVLSACAHLTALEEGRWAHAFIDKHKMVLDSEFNLGAAL 351

Query: 273 IDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLN 332
           ID Y   G+   A  +FH++  ++  AW A+I+GL  N     +  +F +MR  G  P  
Sbjct: 352 IDMYSKCGRTDLAVKIFHSLDQKNVSAWNALITGLAVNGDVRSSIDVFEQMRRSGEKPNG 411

Query: 333 ATFSVLFGAAGATANIDLGRQIHCVLMKT-ESESDLILENCLISMYAKCGVIDNAYNIFS 391
            TF  +  A      +D GR+    +  T   + +     C++ M  + G+++ A  +  
Sbjct: 412 ITFVGVLTACAHGGLVDEGRRCFQSMASTCGVQPEAKHYGCMVDMLGRAGLLEEAEELIR 471

Query: 392 NM 393
           +M
Sbjct: 472 SM 473



 Score =  164 bits (416), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 111/325 (34%), Positives = 160/325 (49%), Gaps = 79/325 (24%)

Query: 21  YSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPE--RNVVSWTA 78
           Y K G I EA+ +F+ MPQRN VS++AM+  +   G L  AR +F+EMP   RNVVSW +
Sbjct: 156 YVKCGEIGEARRVFEQMPQRNGVSWSAMVGAYAGAGELDVAREMFDEMPAIGRNVVSWNS 215

Query: 79  MICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISW 138
           MI G A  G +  ARK+F+EMP RN+VSWN+MV G   NGE+N+AR++F+ MP K+V+SW
Sbjct: 216 MITGFARHGLLPLARKMFDEMPVRNLVSWNTMVRGYAVNGEMNDARELFDRMPEKDVVSW 275

Query: 139 NAMIAGYVECCMMGEAIVLFEEME-ERNV----VTWTSMISG------------------ 175
             MI+GY +     E + LF  M+ E NV    VT  S++S                   
Sbjct: 276 TCMISGYAQARCYTETLELFRAMQSESNVLPNEVTMVSVLSACAHLTALEEGRWAHAFID 335

Query: 176 -------------------YCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKES 216
                              Y + G  +    +F  + +KNV +W A+I G A NG  + S
Sbjct: 336 KHKMVLDSEFNLGAALIDMYSKCGRTDLAVKIFHSLDQKNVSAWNALITGLAVNGDVRSS 395

Query: 217 LLLFIEMK---------------------GICDNGNNCNVQSCNS-------------MI 242
           + +F +M+                     G+ D G  C  QS  S             M+
Sbjct: 396 IDVFEQMRRSGEKPNGITFVGVLTACAHGGLVDEGRRC-FQSMASTCGVQPEAKHYGCMV 454

Query: 243 NGYIRFGRLEEAQNLFDTVPVRDEI 267
           +   R G LEEA+ L  ++P+  ++
Sbjct: 455 DMLGRAGLLEEAEELIRSMPMVPDV 479



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 57/201 (28%), Positives = 101/201 (50%), Gaps = 15/201 (7%)

Query: 7   PKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFE 66
           P   +V   + +  Y+  G +++A+ LF  MP+++VVS+  M+SG+ Q    +E   LF 
Sbjct: 237 PVRNLVSWNTMVRGYAVNGEMNDARELFDRMPEKDVVSWTCMISGYAQARCYTETLELFR 296

Query: 67  EM-PERNV----VSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVG--LI---- 115
            M  E NV    V+  +++   A    + E R     + +  +V  +   +G  LI    
Sbjct: 297 AMQSESNVLPNEVTMVSVLSACAHLTALEEGRWAHAFIDKHKMVLDSEFNLGAALIDMYS 356

Query: 116 RNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEM----EERNVVTWTS 171
           + G  + A K+F+S+  KNV +WNA+I G      +  +I +FE+M    E+ N +T+  
Sbjct: 357 KCGRTDLAVKIFHSLDQKNVSAWNALITGLAVNGDVRSSIDVFEQMRRSGEKPNGITFVG 416

Query: 172 MISGYCRAGEVEEGYCLFRRM 192
           +++     G V+EG   F+ M
Sbjct: 417 VLTACAHGGLVDEGRRCFQSM 437



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 47/179 (26%), Positives = 78/179 (43%), Gaps = 9/179 (5%)

Query: 320 FMEMRAHGVPPLNATFSVLFGAAGATANID-LGRQIHCVLMKTESESDLILENCLISMYA 378
           F  +   G  P   TF  L  +A   A+    G Q+H   ++     D+ + N L++MYA
Sbjct: 66  FSSILRSGDTPDRFTFPSLLKSASRLASFPRTGAQVHAQAVRRGLLVDVFVVNTLLAMYA 125

Query: 379 KCGVIDNAYNIFSNMVS-RDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFL 437
                 +   +F +     DLV+WN+M+ G+   G   E  +VFE M +     N V++ 
Sbjct: 126 AFRDTRSMREVFDSCAGVADLVTWNTMLGGYVKCGEIGEARRVFEQMPQR----NGVSWS 181

Query: 438 GILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLP 496
            ++ A + AG +    E+F+ M     I      + SMI    R G +  A +    +P
Sbjct: 182 AMVGAYAGAGELDVAREMFDEM---PAIGRNVVSWNSMITGFARHGLLPLARKMFDEMP 237


>gi|225470997|ref|XP_002266598.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic [Vitis vinifera]
 gi|297742795|emb|CBI35475.3| unnamed protein product [Vitis vinifera]
          Length = 517

 Score =  283 bits (724), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 161/451 (35%), Positives = 253/451 (56%), Gaps = 9/451 (1%)

Query: 153 EAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGF 212
           +A  +F  ++  ++V+WT +IS Y    +  + + +F  +    +   +  + G      
Sbjct: 55  DAQKVFNHIQNPDIVSWTCLISLYLHTSQPCKAFSIFSHLFHSGLRPDSFCVVGAVSACG 114

Query: 213 HKESLLLFIEMKGIC---DNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISW 269
           H++ L     + G+    + G++  V   N++I+ Y R G +E A ++F T+ ++D  SW
Sbjct: 115 HRKDLSNGRIVHGMVFRFELGSDPIVG--NALIDMYSRSGAIEVACSVFKTMEIKDVSSW 172

Query: 270 TSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGV- 328
           TS+++G++    +  A  +F  MP R++V+WTAMI+G VQ E+ +    LF EMRA G  
Sbjct: 173 TSLLNGFIKCNDIEAARRIFDEMPMRNSVSWTAMITGYVQGEVPIPGLELFQEMRAEGKD 232

Query: 329 -PPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAY 387
            P +    +VL G A   A  DLG  +H  + KT  + D+ + N L+ MYAK G +  A 
Sbjct: 233 WPTVITIVAVLSGCADIGA-FDLGSSVHGYVNKTNLDLDVTVNNALMDMYAKSGALVLAL 291

Query: 388 NIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAG 447
            IF  M  RD+ SW +M+ G + HG     L+ F  M +SG  PN VT L +LSACSHAG
Sbjct: 292 KIFQEMPKRDVFSWTTMISGLALHGKGTHALEAFSDMSKSGVVPNEVTLLSVLSACSHAG 351

Query: 448 LVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGAL 507
           LV  G  LF  M   + I+P  +HY  M++LLGRAG ++EA+E +  +P +PD  IW +L
Sbjct: 352 LVVEGRSLFQKMVQCHGIKPKIQHYGCMVDLLGRAGLLREAKELIEHMPIKPDSVIWRSL 411

Query: 508 LGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGV 567
           L AC    GN  +AE A K ++EL+P +   +++L NIY ++ R  +  K R  M  + V
Sbjct: 412 LSAC-LVHGNLALAEMAGKMIIELEPDDDGVYILLWNIYCSASRWEDALKARKAMRDRRV 470

Query: 568 RKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
           +K PGCSW+  NG +  FL+ D +    A++
Sbjct: 471 KKKPGCSWVEVNGVVHEFLAEDAVHCIRADV 501



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 94/379 (24%), Positives = 168/379 (44%), Gaps = 16/379 (4%)

Query: 48  MLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSW 107
           +L+ + Q G   +A+++F  +   ++VSWT +I       + C+A  +F  +    +   
Sbjct: 43  LLNTYTQLGSPVDAQKVFNHIQNPDIVSWTCLISLYLHTSQPCKAFSIFSHLFHSGLRPD 102

Query: 108 NSMVVGLI----RNGELNEAR----KVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFE 159
           +  VVG +       +L+  R     VF      + I  NA+I  Y     +  A  +F+
Sbjct: 103 SFCVVGAVSACGHRKDLSNGRIVHGMVFRFELGSDPIVGNALIDMYSRSGAIEVACSVFK 162

Query: 160 EMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLL 219
            ME ++V +WTS+++G+ +  ++E    +F  MP +N VSWTAMI G+         L L
Sbjct: 163 TMEIKDVSSWTSLLNGFIKCNDIEAARRIFDEMPMRNSVSWTAMITGYVQGEVPIPGLEL 222

Query: 220 FIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVR----DEISWTSMIDG 275
           F EM+   +  +   V +  ++++G    G  +   ++   V       D     +++D 
Sbjct: 223 FQEMRA--EGKDWPTVITIVAVLSGCADIGAFDLGSSVHGYVNKTNLDLDVTVNNALMDM 280

Query: 276 YLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATF 335
           Y   G +  A  +F  MP RD  +WT MISGL  +     A   F +M   GV P   T 
Sbjct: 281 YAKSGALVLALKIFQEMPKRDVFSWTTMISGLALHGKGTHALEAFSDMSKSGVVPNEVTL 340

Query: 336 SVLFGAAGATANIDLGRQIHCVLMKTESESDLILE-NCLISMYAKCGVIDNAYNIFSNM- 393
             +  A      +  GR +   +++       I    C++ +  + G++  A  +  +M 
Sbjct: 341 LSVLSACSHAGLVVEGRSLFQKMVQCHGIKPKIQHYGCMVDLLGRAGLLREAKELIEHMP 400

Query: 394 VSRDLVSWNSMVMGFSHHG 412
           +  D V W S++     HG
Sbjct: 401 IKPDSVIWRSLLSACLVHG 419



 Score =  111 bits (278), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 91/334 (27%), Positives = 162/334 (48%), Gaps = 27/334 (8%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEM------PER 71
           +  Y++ G   +A+ +F  +   ++VS+  ++S +L   +  +A  +F  +      P+ 
Sbjct: 44  LNTYTQLGSPVDAQKVFNHIQNPDIVSWTCLISLYLHTSQPCKAFSIFSHLFHSGLRPDS 103

Query: 72  NVVSWTAMICGLADA---GRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFN 128
             V      CG       GR+        E+    +V  N+++    R+G +  A  VF 
Sbjct: 104 FCVVGAVSACGHRKDLSNGRIVHGMVFRFELGSDPIVG-NALIDMYSRSGAIEVACSVFK 162

Query: 129 SMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVE-EGYC 187
           +M IK+V SW +++ G+++C  +  A  +F+EM  RN V+WT+MI+GY + GEV   G  
Sbjct: 163 TMEIKDVSSWTSLLNGFIKCNDIEAARRIFDEMPMRNSVSWTAMITGYVQ-GEVPIPGLE 221

Query: 188 LFRRMPRK-----NVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGN-NCNVQSCNSM 241
           LF+ M  +      V++  A++ G A  G    +  L   + G  +  N + +V   N++
Sbjct: 222 LFQEMRAEGKDWPTVITIVAVLSGCADIG----AFDLGSSVHGYVNKTNLDLDVTVNNAL 277

Query: 242 INGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDR----DA 297
           ++ Y + G L  A  +F  +P RD  SWT+MI G    G+ ++A   F +M       + 
Sbjct: 278 MDMYAKSGALVLALKIFQEMPKRDVFSWTTMISGLALHGKGTHALEAFSDMSKSGVVPNE 337

Query: 298 VAWTAMISGLVQNELFVEATYLFMEM-RAHGVPP 330
           V   +++S      L VE   LF +M + HG+ P
Sbjct: 338 VTLLSVLSACSHAGLVVEGRSLFQKMVQCHGIKP 371



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 85/299 (28%), Positives = 145/299 (48%), Gaps = 20/299 (6%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWT 77
           I  YS+ G I+ A ++F+ M  ++V S+ ++L+GF++   +  ARR+F+EMP RN VSWT
Sbjct: 145 IDMYSRSGAIEVACSVFKTMEIKDVSSWTSLLNGFIKCNDIEAARRIFDEMPMRNSVSWT 204

Query: 78  AMICGLADAGRVCEARKLFEEMPER-----NVVSWNSMVVGLIRNGELNEARKVFNSMPI 132
           AMI G           +LF+EM         V++  +++ G    G  +    V   +  
Sbjct: 205 AMITGYVQGEVPIPGLELFQEMRAEGKDWPTVITIVAVLSGCADIGAFDLGSSVHGYVNK 264

Query: 133 KN----VISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCL 188
            N    V   NA++  Y +   +  A+ +F+EM +R+V +WT+MISG    G+       
Sbjct: 265 TNLDLDVTVNNALMDMYAKSGALVLALKIFQEMPKRDVFSWTTMISGLALHGKGTHALEA 324

Query: 189 FRRMPRKNV----VSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMING 244
           F  M +  V    V+  +++   +  G   E   LF +M  +  +G    +Q    M++ 
Sbjct: 325 FSDMSKSGVVPNEVTLLSVLSACSHAGLVVEGRSLFQKM--VQCHGIKPKIQHYGCMVDL 382

Query: 245 YIRFGRLEEAQNLFDTVPVR-DEISWTSMIDGYLSVGQVSNA----YYLFHNMPDRDAV 298
             R G L EA+ L + +P++ D + W S++   L  G ++ A      +    PD D V
Sbjct: 383 LGRAGLLREAKELIEHMPIKPDSVIWRSLLSACLVHGNLALAEMAGKMIIELEPDDDGV 441



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 49/188 (26%), Positives = 92/188 (48%), Gaps = 4/188 (2%)

Query: 272 MIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPL 331
           +++ Y  +G   +A  +F+++ + D V+WT +IS  +      +A  +F  +   G+ P 
Sbjct: 43  LLNTYTQLGSPVDAQKVFNHIQNPDIVSWTCLISLYLHTSQPCKAFSIFSHLFHSGLRPD 102

Query: 332 NATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFS 391
           +        A G   ++  GR +H ++ + E  SD I+ N LI MY++ G I+ A ++F 
Sbjct: 103 SFCVVGAVSACGHRKDLSNGRIVHGMVFRFELGSDPIVGNALIDMYSRSGAIEVACSVFK 162

Query: 392 NMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSR 451
            M  +D+ SW S++ GF          ++F+ M       NSV++  +++      +   
Sbjct: 163 TMEIKDVSSWTSLLNGFIKCNDIEAARRIFDEM----PMRNSVSWTAMITGYVQGEVPIP 218

Query: 452 GWELFNAM 459
           G ELF  M
Sbjct: 219 GLELFQEM 226



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 55/222 (24%), Positives = 96/222 (43%), Gaps = 19/222 (8%)

Query: 241 MINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAY----YLFHNMPDRD 296
           ++N Y + G   +AQ +F+ +   D +SWT +I  YL   Q   A+    +LFH+    D
Sbjct: 43  LLNTYTQLGSPVDAQKVFNHIQNPDIVSWTCLISLYLHTSQPCKAFSIFSHLFHSGLRPD 102

Query: 297 AVAWTAMISGL-----VQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLG 351
           +      +S       + N   V       E+ +   P +      ++  +GA       
Sbjct: 103 SFCVVGAVSACGHRKDLSNGRIVHGMVFRFELGSD--PIVGNALIDMYSRSGAI------ 154

Query: 352 RQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHH 411
            ++ C + KT    D+     L++ + KC  I+ A  IF  M  R+ VSW +M+ G+   
Sbjct: 155 -EVACSVFKTMEIKDVSSWTSLLNGFIKCNDIEAARRIFDEMPMRNSVSWTAMITGYVQG 213

Query: 412 GLANETLKVFESMLESGTH-PNSVTFLGILSACSHAGLVSRG 452
            +    L++F+ M   G   P  +T + +LS C+  G    G
Sbjct: 214 EVPIPGLELFQEMRAEGKDWPTVITIVAVLSGCADIGAFDLG 255


>gi|449486805|ref|XP_004157408.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
            protein At4g33170-like [Cucumis sativus]
          Length = 1573

 Score =  283 bits (724), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 168/528 (31%), Positives = 273/528 (51%), Gaps = 15/528 (2%)

Query: 84   ADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIA 143
            + AG V  A K F   PE +++SWN+M+    +N    EA   F  +    +      +A
Sbjct: 940  SKAGVVYAAEKTFINSPELDLISWNTMISSYAQNNLEMEAICTFRDLLRDGLKPDQFTLA 999

Query: 144  GYVECCMMGEAIVLFEEMEERNVVTW-----------TSMISGYCRAGEVEEGYCLFRRM 192
              +  C  G+    F    + +V              T++I  Y + G+++E   L    
Sbjct: 1000 SVLRACSTGDEGEYFTLGSQVHVYAIKCGIINDSFVSTALIDLYSKGGKMDEAEFLLHGK 1059

Query: 193  PRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLE 252
               ++ SW A++ G+  +   +++L  F  M  +    +   + +        I   + +
Sbjct: 1060 YDFDLASWNAIMFGYIKSNKSRKALEHFSLMHEMGIPIDEITLATAIKASGCLINLKQGK 1119

Query: 253  EAQNLFDTVPVRDEISWTS--MIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQN 310
            + Q     +   +++ W S  ++D Y+  G + NA  LF  +   D VAWT MISG ++N
Sbjct: 1120 QIQAYAIKLGFNNDL-WVSSGVLDMYIKCGDMPNALELFGEISRPDEVAWTTMISGYIEN 1178

Query: 311  ELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILE 370
                 A  ++  MR  GV P   TF+ L  A+     ++ G+QIH  ++K +   D  + 
Sbjct: 1179 GDEDHALSVYHLMRVSGVQPDEYTFATLIKASSCLTALEQGKQIHANVVKLDYSLDHFVG 1238

Query: 371  NCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTH 430
              L+ MY KCG + +AY +F  M  R +V WN+M++G + HG  +E L +F +M  +G  
Sbjct: 1239 TSLVDMYCKCGSVQDAYRVFRKMDVRKVVFWNAMLLGLAQHGHVDEALNLFRTMQSNGIQ 1298

Query: 431  PNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEE 490
            P+ VTF+G+LSACSH+GL S  ++ F+AMF  Y I P  EHY  +++ LGRAG+I+EAE 
Sbjct: 1299 PDKVTFIGVLSACSHSGLFSEAYKYFDAMFKTYGITPEIEHYSCLVDALGRAGRIQEAEN 1358

Query: 491  FVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASG 550
             +  +PF+    ++ ALLGAC   +G+AE A+  A +LL LDP ++ A+V+L NIYAAS 
Sbjct: 1359 VIASMPFKASASMYRALLGACR-TKGDAETAKRVADKLLALDPSDSSAYVLLSNIYAASR 1417

Query: 551  RHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
            +  +    R  M LK V+K PG SW+     + +F+  D+   Q + I
Sbjct: 1418 QWDDVTDARNMMKLKNVKKDPGFSWIDVKNKVHLFVVDDRSHPQASLI 1465



 Score =  145 bits (366), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 117/509 (22%), Positives = 222/509 (43%), Gaps = 57/509 (11%)

Query: 21   YSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVV-SWTAM 79
            Y K G + +A+ LF  MP+R+ V +N ML  +++N    EA R F           ++ +
Sbjct: 762  YCKYGLVGQARLLFDKMPERDAVLWNVMLKAYVENSFQDEALRFFSAFHRSGFXPDFSNL 821

Query: 80   ICGLA--------DAGRVCE-----ARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKV 126
             C +         +  R  E     A K+F      N+ +WN  +   +  G++  A   
Sbjct: 822  HCVIGGVNSDVSNNRKRHAEQVKAYAMKMFPFDQGSNIFAWNKKLTEFLHAGQIVAAIDC 881

Query: 127  FNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWT---------SMISGYC 177
            F ++ +++ I  +++    +    +G   +   E     V+  +         S+++ Y 
Sbjct: 882  FKTL-LRSTIGHDSVTLVIILSAAVGADDLDLGEQIHALVIKSSFAPVVPVSNSLMNMYS 940

Query: 178  RAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEM--KGI--------- 226
            +AG V      F   P  +++SW  MI  +A N    E++  F ++   G+         
Sbjct: 941  KAGVVYAAEKTFINSPELDLISWNTMISSYAQNNLEMEAICTFRDLLRDGLKPDQFTLAS 1000

Query: 227  ----CDNGNNCNVQSCNSMINGY-IRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQ 281
                C  G+     +  S ++ Y I+ G             + D    T++ID Y   G+
Sbjct: 1001 VLRACSTGDEGEYFTLGSQVHVYAIKCG------------IINDSFVSTALIDLYSKGGK 1048

Query: 282  VSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGA 341
            +  A +L H   D D  +W A++ G +++    +A   F  M   G+P    T +    A
Sbjct: 1049 MDEAEFLLHGKYDFDLASWNAIMFGYIKSNKSRKALEHFSLMHEMGIPIDEITLATAIKA 1108

Query: 342  AGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSW 401
            +G   N+  G+QI    +K    +DL + + ++ MY KCG + NA  +F  +   D V+W
Sbjct: 1109 SGCLINLKQGKQIQAYAIKLGFNNDLWVSSGVLDMYIKCGDMPNALELFGEISRPDEVAW 1168

Query: 402  NSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFD 461
             +M+ G+  +G  +  L V+  M  SG  P+  TF  ++ A S    + +G ++     +
Sbjct: 1169 TTMISGYIENGDEDHALSVYHLMRVSGVQPDEYTFATLIKASSCLTALEQGKQIHA---N 1225

Query: 462  VYKIQPGPEHYV--SMINLLGRAGKIKEA 488
            V K+    +H+V  S++++  + G +++A
Sbjct: 1226 VVKLDYSLDHFVGTSLVDMYCKCGSVQDA 1254



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 110/486 (22%), Positives = 217/486 (44%), Gaps = 55/486 (11%)

Query: 53   LQNGRLSEARRLFE-EMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMV 111
            L+ G+ + AR +   ++P+R + +   +I   +  G +C AR++F++  +R++V+WNS++
Sbjct: 627  LKLGKRAHARIVTSGDLPDRYLTN--NLITMYSKCGSLCSARQVFDKSSDRDLVTWNSIL 684

Query: 112  VGLIRNGELN-----EARKVFN---------SMPIKNVISWNAMIAGYVEC--CMMGEAI 155
                +  + +     E  ++F          +      +    +++G+V+    + G A+
Sbjct: 685  AAYAQFADSSYENVLEGFRLFGLLREFGFSITRLTLAPLLKLCLLSGFVQVSETVHGYAV 744

Query: 156  VLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKE 215
             +  E++   +    ++++ YC+ G V +   LF +MP ++ V W  M+  +  N F  E
Sbjct: 745  KIGFELD---LFVSGALVNIYCKYGLVGQARLLFDKMPERDAVLWNVMLKAYVENSFQDE 801

Query: 216  SLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDG 275
            +L  F          +  N+      +N  +   R   A+          ++   +M   
Sbjct: 802  ALRFFSAFHRSGFXPDFSNLHCVIGGVNSDVSNNRKRHAE----------QVKAYAM--K 849

Query: 276  YLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATF 335
                 Q SN +            AW   ++  +     V A   F  +    +   + T 
Sbjct: 850  MFPFDQGSNIF------------AWNKKLTEFLHAGQIVAAIDCFKTLLRSTIGHDSVTL 897

Query: 336  SVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVS 395
             ++  AA    ++DLG QIH +++K+     + + N L++MY+K GV+  A   F N   
Sbjct: 898  VIILSAAVGADDLDLGEQIHALVIKSSFAPVVPVSNSLMNMYSKAGVVYAAEKTFINSPE 957

Query: 396  RDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWEL 455
             DL+SWN+M+  ++ + L  E +  F  +L  G  P+  T   +L ACS        +  
Sbjct: 958  LDLISWNTMISSYAQNNLEMEAICTFRDLLRDGLKPDQFTLASVLRACSTGD--EGEYFT 1015

Query: 456  FNAMFDVYKIQPG--PEHYVS--MINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGAC 511
              +   VY I+ G   + +VS  +I+L  + GK+ EA EF+L   ++ D   W A++   
Sbjct: 1016 LGSQVHVYAIKCGIINDSFVSTALIDLYSKGGKMDEA-EFLLHGKYDFDLASWNAIM--F 1072

Query: 512  GFCEGN 517
            G+ + N
Sbjct: 1073 GYIKSN 1078



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 125/609 (20%), Positives = 240/609 (39%), Gaps = 99/609 (16%)

Query: 37   MPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICG---LADAG--RVCE 91
            +P R +   N +++ + + G L  AR++F++  +R++V+W +++      AD+    V E
Sbjct: 643  LPDRYLT--NNLITMYSKCGSLCSARQVFDKSSDRDLVTWNSILAAYAQFADSSYENVLE 700

Query: 92   ARKLFEEMPE---------RNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMI 142
              +LF  + E            +    ++ G ++  E      V     +   +S  A++
Sbjct: 701  GFRLFGLLREFGFSITRLTLAPLLKLCLLSGFVQVSETVHGYAVKIGFELDLFVS-GALV 759

Query: 143  AGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRK----NVV 198
              Y +  ++G+A +LF++M ER+ V W  M+  Y      +E    F    R     +  
Sbjct: 760  NIYCKYGLVGQARLLFDKMPERDAVLWNVMLKAYVENSFQDEALRFFSAFHRSGFXPDFS 819

Query: 199  SWTAMIGGFAWN-----GFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEE 253
            +   +IGG   +       H E +  +       D G+N  + + N  +  ++  G++  
Sbjct: 820  NLHCVIGGVNSDVSNNRKRHAEQVKAYAMKMFPFDQGSN--IFAWNKKLTEFLHAGQIVA 877

Query: 254  AQNLFDT--------------------------------------------VPVRDEISW 269
            A + F T                                            VPV +    
Sbjct: 878  AIDCFKTLLRSTIGHDSVTLVIILSAAVGADDLDLGEQIHALVIKSSFAPVVPVSN---- 933

Query: 270  TSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVP 329
             S+++ Y   G V  A   F N P+ D ++W  MIS   QN L +EA   F ++   G+ 
Sbjct: 934  -SLMNMYSKAGVVYAAEKTFINSPELDLISWNTMISSYAQNNLEMEAICTFRDLLRDGLK 992

Query: 330  PLNATFSVLFGAAGATAN---IDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNA 386
            P   T + +  A           LG Q+H   +K    +D  +   LI +Y+K G +D A
Sbjct: 993  PDQFTLASVLRACSTGDEGEYFTLGSQVHVYAIKCGIINDSFVSTALIDLYSKGGKMDEA 1052

Query: 387  YNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHA 446
              +       DL SWN+++ G+     + + L+ F  M E G   + +T    + A    
Sbjct: 1053 EFLLHGKYDFDLASWNAIMFGYIKSNKSRKALEHFSLMHEMGIPIDEITLATAIKASGCL 1112

Query: 447  GLVSRGWELFNAMFDVYKIQPG--PEHYVS--MINLLGRAGKIKEAEEFVLRLPFEPDHR 502
              + +G ++       Y I+ G   + +VS  ++++  + G +  A E    +   PD  
Sbjct: 1113 INLKQGKQI-----QAYAIKLGFNNDLWVSSGVLDMYIKCGDMPNALELFGEIS-RPDEV 1166

Query: 503  IWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAAS-------GRHVEE 555
             W  ++   G+ E   E    +   L+ +  +    +     I A+S       G+ +  
Sbjct: 1167 AWTTMI--SGYIENGDEDHALSVYHLMRVSGVQPDEYTFATLIKASSCLTALEQGKQIHA 1224

Query: 556  HKLRMDMGL 564
            + +++D  L
Sbjct: 1225 NVVKLDYSL 1233



 Score = 82.0 bits (201), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 81/332 (24%), Positives = 142/332 (42%), Gaps = 57/332 (17%)

Query: 15   TSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNV- 73
            T+ I  YSK G +DEA+ L       ++ S+NA++ G++++ +  +A   F  M E  + 
Sbjct: 1037 TALIDLYSKGGKMDEAEFLLHGKYDFDLASWNAIMFGYIKSNKSRKALEHFSLMHEMGIP 1096

Query: 74   -------VSWTAMIC---------------------------GLAD----AGRVCEARKL 95
                    +  A  C                           G+ D     G +  A +L
Sbjct: 1097 IDEITLATAIKASGCLINLKQGKQIQAYAIKLGFNNDLWVSSGVLDMYIKCGDMPNALEL 1156

Query: 96   FEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAI 155
            F E+   + V+W +M+ G I NG+ + A  V++ M +  V       A  ++      A+
Sbjct: 1157 FGEISRPDEVAWTTMISGYIENGDEDHALSVYHLMRVSGVQPDEYTFATLIKASSCLTAL 1216

Query: 156  VLFEEMEERNVVTW---------TSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGG 206
               +++   NVV           TS++  YC+ G V++ Y +FR+M  + VV W AM+ G
Sbjct: 1217 EQGKQIHA-NVVKLDYSLDHFVGTSLVDMYCKCGSVQDAYRVFRKMDVRKVVFWNAMLLG 1275

Query: 207  FAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFD----TVP 262
             A +G   E+L LF  M+    NG   +  +   +++     G   EA   FD    T  
Sbjct: 1276 LAQHGHVDEALNLFRTMQS---NGIQPDKVTFIGVLSACSHSGLFSEAYKYFDAMFKTYG 1332

Query: 263  VRDEIS-WTSMIDGYLSVGQVSNAYYLFHNMP 293
            +  EI  ++ ++D     G++  A  +  +MP
Sbjct: 1333 ITPEIEHYSCLVDALGRAGRIQEAENVIASMP 1364



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 54/235 (22%), Positives = 99/235 (42%), Gaps = 49/235 (20%)

Query: 21   YSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEM------PER--- 71
            Y K G +  A  LF  + + + V++  M+SG+++NG    A  ++  M      P+    
Sbjct: 1144 YIKCGDMPNALELFGEISRPDEVAWTTMISGYIENGDEDHALSVYHLMRVSGVQPDEYTF 1203

Query: 72   ---------------------NVVSW---------TAMICGLADAGRVCEARKLFEEMPE 101
                                 NVV           T+++      G V +A ++F +M  
Sbjct: 1204 ATLIKASSCLTALEQGKQIHANVVKLDYSLDHFVGTSLVDMYCKCGSVQDAYRVFRKMDV 1263

Query: 102  RNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECC----MMGEAIVL 157
            R VV WN+M++GL ++G ++EA  +F +M    +        G +  C    +  EA   
Sbjct: 1264 RKVVFWNAMLLGLAQHGHVDEALNLFRTMQSNGIQPDKVTFIGVLSACSHSGLFSEAYKY 1323

Query: 158  FEEMEERNVVT-----WTSMISGYCRAGEVEEGYCLFRRMPRKNVVS-WTAMIGG 206
            F+ M +   +T     ++ ++    RAG ++E   +   MP K   S + A++G 
Sbjct: 1324 FDAMFKTYGITPEIEHYSCLVDALGRAGRIQEAENVIASMPFKASASMYRALLGA 1378



 Score = 59.3 bits (142), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 48/179 (26%), Positives = 88/179 (49%), Gaps = 15/179 (8%)

Query: 341 AAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVS 400
           +A A A++ LG++ H  ++ +    D  L N LI+MY+KCG + +A  +F     RDLV+
Sbjct: 620 SAIAMADLKLGKRAHARIVTSGDLPDRYLTNNLITMYSKCGSLCSARQVFDKSSDRDLVT 679

Query: 401 WNSMVMGFSHHGLAN-----ETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWEL 455
           WNS++  ++    ++     E  ++F  + E G     +T   +L  C  +G V     +
Sbjct: 680 WNSILAAYAQFADSSYENVLEGFRLFGLLREFGFSITRLTLAPLLKLCLLSGFVQVSETV 739

Query: 456 FNAMFDVYKIQPGPE--HYVS--MINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGA 510
                  Y ++ G E   +VS  ++N+  + G + +A     ++P E D  +W  +L A
Sbjct: 740 HG-----YAVKIGFELDLFVSGALVNIYCKYGLVGQARLLFDKMP-ERDAVLWNVMLKA 792



 Score = 44.7 bits (104), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 33/121 (27%), Positives = 59/121 (48%), Gaps = 14/121 (11%)

Query: 22   SKRGFIDEAKALFQLMP----QRNVVSYNAMLSGFLQNGRLSEARRLFEEM-------PE 70
            ++ G +DEA  LF+ M     Q + V++  +LS    +G  SEA + F+ M       PE
Sbjct: 1277 AQHGHVDEALNLFRTMQSNGIQPDKVTFIGVLSACSHSGLFSEAYKYFDAMFKTYGITPE 1336

Query: 71   RNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRN-GELNEARKVFNS 129
              +  ++ ++  L  AGR+ EA  +   MP +   S    ++G  R  G+   A++V + 
Sbjct: 1337 --IEHYSCLVDALGRAGRIQEAENVIASMPFKASASMYRALLGACRTKGDAETAKRVADK 1394

Query: 130  M 130
            +
Sbjct: 1395 L 1395


>gi|449447363|ref|XP_004141438.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
            [Cucumis sativus]
          Length = 1573

 Score =  283 bits (724), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 168/528 (31%), Positives = 273/528 (51%), Gaps = 15/528 (2%)

Query: 84   ADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIA 143
            + AG V  A K F   PE +++SWN+M+    +N    EA   F  +    +      +A
Sbjct: 940  SKAGVVYAAEKTFINSPELDLISWNTMISSYAQNNLEMEAICTFRDLLRDGLKPDQFTLA 999

Query: 144  GYVECCMMGEAIVLFEEMEERNVVTW-----------TSMISGYCRAGEVEEGYCLFRRM 192
              +  C  G+    F    + +V              T++I  Y + G+++E   L    
Sbjct: 1000 SVLRACSTGDEGEYFTLGSQVHVYAIKCGIINDSFVSTALIDLYSKGGKMDEAEFLLHGK 1059

Query: 193  PRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLE 252
               ++ SW A++ G+  +   +++L  F  M  +    +   + +        I   + +
Sbjct: 1060 YDFDLASWNAIMFGYIKSNKSRKALEHFSLMHEMGIPIDEITLATAIKASGCLINLKQGK 1119

Query: 253  EAQNLFDTVPVRDEISWTS--MIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQN 310
            + Q     +   +++ W S  ++D Y+  G + NA  LF  +   D VAWT MISG ++N
Sbjct: 1120 QIQAYAIKLGFNNDL-WVSSGVLDMYIKCGDMPNALELFGEISRPDEVAWTTMISGYIEN 1178

Query: 311  ELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILE 370
                 A  ++  MR  GV P   TF+ L  A+     ++ G+QIH  ++K +   D  + 
Sbjct: 1179 GDEDHALSVYHLMRVSGVQPDEYTFATLIKASSCLTALEQGKQIHANVVKLDYSLDHFVG 1238

Query: 371  NCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTH 430
              L+ MY KCG + +AY +F  M  R +V WN+M++G + HG  +E L +F +M  +G  
Sbjct: 1239 TSLVDMYCKCGSVQDAYRVFRKMDVRKVVFWNAMLLGLAQHGHVDEALNLFRTMQSNGIQ 1298

Query: 431  PNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEE 490
            P+ VTF+G+LSACSH+GL S  ++ F+AMF  Y I P  EHY  +++ LGRAG+I+EAE 
Sbjct: 1299 PDKVTFIGVLSACSHSGLFSEAYKYFDAMFKTYGITPEIEHYSCLVDALGRAGRIQEAEN 1358

Query: 491  FVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASG 550
             +  +PF+    ++ ALLGAC   +G+AE A+  A +LL LDP ++ A+V+L NIYAAS 
Sbjct: 1359 VIASMPFKASASMYRALLGACR-TKGDAETAKRVADKLLALDPSDSSAYVLLSNIYAASR 1417

Query: 551  RHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
            +  +    R  M LK V+K PG SW+     + +F+  D+   Q + I
Sbjct: 1418 QWDDVTDARNMMKLKNVKKDPGFSWIDVKNKVHLFVVDDRSHPQASLI 1465



 Score =  145 bits (366), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 117/509 (22%), Positives = 222/509 (43%), Gaps = 57/509 (11%)

Query: 21   YSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVV-SWTAM 79
            Y K G + +A+ LF  MP+R+ V +N ML  +++N    EA R F           ++ +
Sbjct: 762  YCKYGLVGQARLLFDKMPERDAVLWNVMLKAYVENSFQDEALRFFSAFHRSGFFPDFSNL 821

Query: 80   ICGLA--------DAGRVCE-----ARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKV 126
             C +         +  R  E     A K+F      N+ +WN  +   +  G++  A   
Sbjct: 822  HCVIGGVNSDVSNNRKRHAEQVKAYAMKMFPFDQGSNIFAWNKKLTEFLHAGQIVAAIDC 881

Query: 127  FNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWT---------SMISGYC 177
            F ++ +++ I  +++    +    +G   +   E     V+  +         S+++ Y 
Sbjct: 882  FKTL-LRSTIGHDSVTLVIILSAAVGADDLDLGEQIHALVIKSSFAPVVPVSNSLMNMYS 940

Query: 178  RAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEM--KGI--------- 226
            +AG V      F   P  +++SW  MI  +A N    E++  F ++   G+         
Sbjct: 941  KAGVVYAAEKTFINSPELDLISWNTMISSYAQNNLEMEAICTFRDLLRDGLKPDQFTLAS 1000

Query: 227  ----CDNGNNCNVQSCNSMINGY-IRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQ 281
                C  G+     +  S ++ Y I+ G             + D    T++ID Y   G+
Sbjct: 1001 VLRACSTGDEGEYFTLGSQVHVYAIKCG------------IINDSFVSTALIDLYSKGGK 1048

Query: 282  VSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGA 341
            +  A +L H   D D  +W A++ G +++    +A   F  M   G+P    T +    A
Sbjct: 1049 MDEAEFLLHGKYDFDLASWNAIMFGYIKSNKSRKALEHFSLMHEMGIPIDEITLATAIKA 1108

Query: 342  AGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSW 401
            +G   N+  G+QI    +K    +DL + + ++ MY KCG + NA  +F  +   D V+W
Sbjct: 1109 SGCLINLKQGKQIQAYAIKLGFNNDLWVSSGVLDMYIKCGDMPNALELFGEISRPDEVAW 1168

Query: 402  NSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFD 461
             +M+ G+  +G  +  L V+  M  SG  P+  TF  ++ A S    + +G ++     +
Sbjct: 1169 TTMISGYIENGDEDHALSVYHLMRVSGVQPDEYTFATLIKASSCLTALEQGKQIHA---N 1225

Query: 462  VYKIQPGPEHYV--SMINLLGRAGKIKEA 488
            V K+    +H+V  S++++  + G +++A
Sbjct: 1226 VVKLDYSLDHFVGTSLVDMYCKCGSVQDA 1254



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 110/486 (22%), Positives = 217/486 (44%), Gaps = 55/486 (11%)

Query: 53   LQNGRLSEARRLFE-EMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMV 111
            L+ G+ + AR +   ++P+R + +   +I   +  G +C AR++F++  +R++V+WNS++
Sbjct: 627  LKLGKRAHARIVTSGDLPDRYLTN--NLITMYSKCGSLCSARQVFDKSSDRDLVTWNSIL 684

Query: 112  VGLIRNGELN-----EARKVFN---------SMPIKNVISWNAMIAGYVEC--CMMGEAI 155
                +  + +     E  ++F          +      +    +++G+V+    + G A+
Sbjct: 685  AAYAQFADSSYENVLEGFRLFGLLREFGFSITRLTLAPLLKLCLLSGFVQVSETVHGYAV 744

Query: 156  VLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKE 215
             +  E++   +    ++++ YC+ G V +   LF +MP ++ V W  M+  +  N F  E
Sbjct: 745  KIGFELD---LFVSGALVNIYCKYGLVGQARLLFDKMPERDAVLWNVMLKAYVENSFQDE 801

Query: 216  SLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDG 275
            +L  F          +  N+      +N  +   R   A+          ++   +M   
Sbjct: 802  ALRFFSAFHRSGFFPDFSNLHCVIGGVNSDVSNNRKRHAE----------QVKAYAM--K 849

Query: 276  YLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATF 335
                 Q SN +            AW   ++  +     V A   F  +    +   + T 
Sbjct: 850  MFPFDQGSNIF------------AWNKKLTEFLHAGQIVAAIDCFKTLLRSTIGHDSVTL 897

Query: 336  SVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVS 395
             ++  AA    ++DLG QIH +++K+     + + N L++MY+K GV+  A   F N   
Sbjct: 898  VIILSAAVGADDLDLGEQIHALVIKSSFAPVVPVSNSLMNMYSKAGVVYAAEKTFINSPE 957

Query: 396  RDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWEL 455
             DL+SWN+M+  ++ + L  E +  F  +L  G  P+  T   +L ACS        +  
Sbjct: 958  LDLISWNTMISSYAQNNLEMEAICTFRDLLRDGLKPDQFTLASVLRACSTGD--EGEYFT 1015

Query: 456  FNAMFDVYKIQPG--PEHYVS--MINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGAC 511
              +   VY I+ G   + +VS  +I+L  + GK+ EA EF+L   ++ D   W A++   
Sbjct: 1016 LGSQVHVYAIKCGIINDSFVSTALIDLYSKGGKMDEA-EFLLHGKYDFDLASWNAIM--F 1072

Query: 512  GFCEGN 517
            G+ + N
Sbjct: 1073 GYIKSN 1078



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 125/609 (20%), Positives = 240/609 (39%), Gaps = 99/609 (16%)

Query: 37   MPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICG---LADAG--RVCE 91
            +P R +   N +++ + + G L  AR++F++  +R++V+W +++      AD+    V E
Sbjct: 643  LPDRYLT--NNLITMYSKCGSLCSARQVFDKSSDRDLVTWNSILAAYAQFADSSYENVLE 700

Query: 92   ARKLFEEMPE---------RNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMI 142
              +LF  + E            +    ++ G ++  E      V     +   +S  A++
Sbjct: 701  GFRLFGLLREFGFSITRLTLAPLLKLCLLSGFVQVSETVHGYAVKIGFELDLFVS-GALV 759

Query: 143  AGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRK----NVV 198
              Y +  ++G+A +LF++M ER+ V W  M+  Y      +E    F    R     +  
Sbjct: 760  NIYCKYGLVGQARLLFDKMPERDAVLWNVMLKAYVENSFQDEALRFFSAFHRSGFFPDFS 819

Query: 199  SWTAMIGGFAWN-----GFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEE 253
            +   +IGG   +       H E +  +       D G+N  + + N  +  ++  G++  
Sbjct: 820  NLHCVIGGVNSDVSNNRKRHAEQVKAYAMKMFPFDQGSN--IFAWNKKLTEFLHAGQIVA 877

Query: 254  AQNLFDT--------------------------------------------VPVRDEISW 269
            A + F T                                            VPV +    
Sbjct: 878  AIDCFKTLLRSTIGHDSVTLVIILSAAVGADDLDLGEQIHALVIKSSFAPVVPVSN---- 933

Query: 270  TSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVP 329
             S+++ Y   G V  A   F N P+ D ++W  MIS   QN L +EA   F ++   G+ 
Sbjct: 934  -SLMNMYSKAGVVYAAEKTFINSPELDLISWNTMISSYAQNNLEMEAICTFRDLLRDGLK 992

Query: 330  PLNATFSVLFGAAGATAN---IDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNA 386
            P   T + +  A           LG Q+H   +K    +D  +   LI +Y+K G +D A
Sbjct: 993  PDQFTLASVLRACSTGDEGEYFTLGSQVHVYAIKCGIINDSFVSTALIDLYSKGGKMDEA 1052

Query: 387  YNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHA 446
              +       DL SWN+++ G+     + + L+ F  M E G   + +T    + A    
Sbjct: 1053 EFLLHGKYDFDLASWNAIMFGYIKSNKSRKALEHFSLMHEMGIPIDEITLATAIKASGCL 1112

Query: 447  GLVSRGWELFNAMFDVYKIQPG--PEHYVS--MINLLGRAGKIKEAEEFVLRLPFEPDHR 502
              + +G ++       Y I+ G   + +VS  ++++  + G +  A E    +   PD  
Sbjct: 1113 INLKQGKQI-----QAYAIKLGFNNDLWVSSGVLDMYIKCGDMPNALELFGEIS-RPDEV 1166

Query: 503  IWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAAS-------GRHVEE 555
             W  ++   G+ E   E    +   L+ +  +    +     I A+S       G+ +  
Sbjct: 1167 AWTTMI--SGYIENGDEDHALSVYHLMRVSGVQPDEYTFATLIKASSCLTALEQGKQIHA 1224

Query: 556  HKLRMDMGL 564
            + +++D  L
Sbjct: 1225 NVVKLDYSL 1233



 Score = 82.0 bits (201), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 81/332 (24%), Positives = 142/332 (42%), Gaps = 57/332 (17%)

Query: 15   TSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNV- 73
            T+ I  YSK G +DEA+ L       ++ S+NA++ G++++ +  +A   F  M E  + 
Sbjct: 1037 TALIDLYSKGGKMDEAEFLLHGKYDFDLASWNAIMFGYIKSNKSRKALEHFSLMHEMGIP 1096

Query: 74   -------VSWTAMIC---------------------------GLAD----AGRVCEARKL 95
                    +  A  C                           G+ D     G +  A +L
Sbjct: 1097 IDEITLATAIKASGCLINLKQGKQIQAYAIKLGFNNDLWVSSGVLDMYIKCGDMPNALEL 1156

Query: 96   FEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAI 155
            F E+   + V+W +M+ G I NG+ + A  V++ M +  V       A  ++      A+
Sbjct: 1157 FGEISRPDEVAWTTMISGYIENGDEDHALSVYHLMRVSGVQPDEYTFATLIKASSCLTAL 1216

Query: 156  VLFEEMEERNVVTW---------TSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGG 206
               +++   NVV           TS++  YC+ G V++ Y +FR+M  + VV W AM+ G
Sbjct: 1217 EQGKQIHA-NVVKLDYSLDHFVGTSLVDMYCKCGSVQDAYRVFRKMDVRKVVFWNAMLLG 1275

Query: 207  FAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFD----TVP 262
             A +G   E+L LF  M+    NG   +  +   +++     G   EA   FD    T  
Sbjct: 1276 LAQHGHVDEALNLFRTMQS---NGIQPDKVTFIGVLSACSHSGLFSEAYKYFDAMFKTYG 1332

Query: 263  VRDEIS-WTSMIDGYLSVGQVSNAYYLFHNMP 293
            +  EI  ++ ++D     G++  A  +  +MP
Sbjct: 1333 ITPEIEHYSCLVDALGRAGRIQEAENVIASMP 1364



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 54/235 (22%), Positives = 99/235 (42%), Gaps = 49/235 (20%)

Query: 21   YSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEM------PER--- 71
            Y K G +  A  LF  + + + V++  M+SG+++NG    A  ++  M      P+    
Sbjct: 1144 YIKCGDMPNALELFGEISRPDEVAWTTMISGYIENGDEDHALSVYHLMRVSGVQPDEYTF 1203

Query: 72   ---------------------NVVSW---------TAMICGLADAGRVCEARKLFEEMPE 101
                                 NVV           T+++      G V +A ++F +M  
Sbjct: 1204 ATLIKASSCLTALEQGKQIHANVVKLDYSLDHFVGTSLVDMYCKCGSVQDAYRVFRKMDV 1263

Query: 102  RNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECC----MMGEAIVL 157
            R VV WN+M++GL ++G ++EA  +F +M    +        G +  C    +  EA   
Sbjct: 1264 RKVVFWNAMLLGLAQHGHVDEALNLFRTMQSNGIQPDKVTFIGVLSACSHSGLFSEAYKY 1323

Query: 158  FEEMEERNVVT-----WTSMISGYCRAGEVEEGYCLFRRMPRKNVVS-WTAMIGG 206
            F+ M +   +T     ++ ++    RAG ++E   +   MP K   S + A++G 
Sbjct: 1324 FDAMFKTYGITPEIEHYSCLVDALGRAGRIQEAENVIASMPFKASASMYRALLGA 1378



 Score = 59.3 bits (142), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 48/179 (26%), Positives = 88/179 (49%), Gaps = 15/179 (8%)

Query: 341 AAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVS 400
           +A A A++ LG++ H  ++ +    D  L N LI+MY+KCG + +A  +F     RDLV+
Sbjct: 620 SAIAMADLKLGKRAHARIVTSGDLPDRYLTNNLITMYSKCGSLCSARQVFDKSSDRDLVT 679

Query: 401 WNSMVMGFSHHGLAN-----ETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWEL 455
           WNS++  ++    ++     E  ++F  + E G     +T   +L  C  +G V     +
Sbjct: 680 WNSILAAYAQFADSSYENVLEGFRLFGLLREFGFSITRLTLAPLLKLCLLSGFVQVSETV 739

Query: 456 FNAMFDVYKIQPGPE--HYVS--MINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGA 510
                  Y ++ G E   +VS  ++N+  + G + +A     ++P E D  +W  +L A
Sbjct: 740 HG-----YAVKIGFELDLFVSGALVNIYCKYGLVGQARLLFDKMP-ERDAVLWNVMLKA 792



 Score = 44.7 bits (104), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 33/121 (27%), Positives = 59/121 (48%), Gaps = 14/121 (11%)

Query: 22   SKRGFIDEAKALFQLMP----QRNVVSYNAMLSGFLQNGRLSEARRLFEEM-------PE 70
            ++ G +DEA  LF+ M     Q + V++  +LS    +G  SEA + F+ M       PE
Sbjct: 1277 AQHGHVDEALNLFRTMQSNGIQPDKVTFIGVLSACSHSGLFSEAYKYFDAMFKTYGITPE 1336

Query: 71   RNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRN-GELNEARKVFNS 129
              +  ++ ++  L  AGR+ EA  +   MP +   S    ++G  R  G+   A++V + 
Sbjct: 1337 --IEHYSCLVDALGRAGRIQEAENVIASMPFKASASMYRALLGACRTKGDAETAKRVADK 1394

Query: 130  M 130
            +
Sbjct: 1395 L 1395


>gi|356566136|ref|XP_003551291.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g47840-like [Glycine max]
          Length = 733

 Score =  283 bits (724), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 180/563 (31%), Positives = 285/563 (50%), Gaps = 43/563 (7%)

Query: 46  NAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVV 105
           +A++  +++ G++ +  R+FE+M  RNVVSWTA+I GL  AG   E    F EM  R+ V
Sbjct: 163 SALIDMYMKVGKIEQGCRVFEKMMTRNVVSWTAIIAGLVHAGYNMEGLLYFSEM-WRSKV 221

Query: 106 SWNSMVVGLIRNGELNEAR----KVFNSMPIK-----NVISWNAMIAGYVECCMMGEAIV 156
            ++S    +      + +     K  ++  IK     +    N +   Y +C      + 
Sbjct: 222 GYDSHTFAIALKASADSSLLHHGKAIHTQTIKQGFDESSFVINTLATMYNKCGKPDYVMR 281

Query: 157 LFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKES 216
           LFE+M   +VV+WT++IS Y + GE E     F+RM RK+ VS       FA        
Sbjct: 282 LFEKMRMPDVVSWTTLISTYVQMGEEEHAVEAFKRM-RKSYVSPNKYT--FA-------- 330

Query: 217 LLLFIEMKGICDNGNNCNVQSCNSMINGYI-RFGRLEEAQNLFDTVPVRDEISWTSMIDG 275
                    +  +  N         I+G++ R G       L + + V +     S+I  
Sbjct: 331 --------AVISSCANLAAAKWGEQIHGHVLRLG-------LVNALSVAN-----SIITL 370

Query: 276 YLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATF 335
           Y   G + +A  +FH +  +D ++W+ +IS   Q     EA      MR  G  P     
Sbjct: 371 YSKCGLLKSASLVFHGITRKDIISWSTIISVYSQGGYAKEAFDYLSWMRREGPKPNEFAL 430

Query: 336 SVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVS 395
           S +    G+ A ++ G+Q+H  L+    + + ++ + +ISMY+KCG +  A  IF+ M  
Sbjct: 431 SSVLSVCGSMALLEQGKQVHAHLLCIGIDHEAMVHSAIISMYSKCGSVQEASKIFNGMKI 490

Query: 396 RDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWEL 455
            D++SW +M+ G++ HG + E + +FE +   G  P+ V F+G+L+AC+HAG+V  G+  
Sbjct: 491 NDIISWTAMINGYAEHGYSQEAINLFEKISSVGLKPDYVMFIGVLTACNHAGMVDLGFYY 550

Query: 456 FNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCE 515
           F  M +VY+I P  EHY  +I+LL RAG++ EAE  +  +PF  D  +W  LL AC    
Sbjct: 551 FMLMTNVYRISPSKEHYGCLIDLLCRAGRLSEAEHIIRSMPFHTDDVVWSTLLRACR-VH 609

Query: 516 GNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSW 575
           G+ +     A++LL+LDP +A  H+ L NIYAA GR  E   +R  M  KGV K  G SW
Sbjct: 610 GDVDRGRWTAEQLLQLDPNSAGTHITLANIYAAKGRWKEAAHIRKLMKSKGVIKERGWSW 669

Query: 576 LMRNGGIQMFLSGDKIPAQVAEI 598
           +  N  +  F++GD+   Q   I
Sbjct: 670 VNVNDQLNAFVAGDQAHPQSEHI 692



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 120/490 (24%), Positives = 226/490 (46%), Gaps = 43/490 (8%)

Query: 33  LFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFE----EMPERNVVSWTAMI------CG 82
           + +L+ +   V+ + + + ++  G  +E R L +    E P  N  S   M+        
Sbjct: 7   MIKLLYKETRVALHYISNRYILTGTATECRELIQQPIQEQPAENAYSVHNMLELNSELKQ 66

Query: 83  LADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSM-----PIKNVIS 137
           L   G++C+AR +F++M  R+ +SW +++ G +   +  EA  +F++M     P ++   
Sbjct: 67  LVKQGQLCKARYMFDKMTHRDEISWTTLIAGYVNASDSYEALILFSNMWVHPGPQRD--- 123

Query: 138 WNAMIAGYVECCMMGEAIVLFEEMEE--------RNVVTWTSMISGYCRAGEVEEGYCLF 189
              MI+  ++ C +G  I   E +           +V   +++I  Y + G++E+G  +F
Sbjct: 124 -QFMISVALKACALGVNICFGELLHGFSVKSGLIHSVFVSSALIDMYMKVGKIEQGCRVF 182

Query: 190 RRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEM--KGICDNGNNCNVQSCNSMINGYIR 247
            +M  +NVVSWTA+I G    G++ E LL F EM    +  + +   +    S  +  + 
Sbjct: 183 EKMMTRNVVSWTAIIAGLVHAGYNMEGLLYFSEMWRSKVGYDSHTFAIALKASADSSLLH 242

Query: 248 FGRLEEAQNLFDTVPVRDEISWT--SMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMIS 305
            G+    Q +       DE S+   ++   Y   G+      LF  M   D V+WT +IS
Sbjct: 243 HGKAIHTQTIKQGF---DESSFVINTLATMYNKCGKPDYVMRLFEKMRMPDVVSWTTLIS 299

Query: 306 GLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESES 365
             VQ      A   F  MR   V P   TF+ +  +    A    G QIH  +++    +
Sbjct: 300 TYVQMGEEEHAVEAFKRMRKSYVSPNKYTFAAVISSCANLAAAKWGEQIHGHVLRLGLVN 359

Query: 366 DLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESML 425
            L + N +I++Y+KCG++ +A  +F  +  +D++SW++++  +S  G A E       M 
Sbjct: 360 ALSVANSIITLYSKCGLLKSASLVFHGITRKDIISWSTIISVYSQGGYAKEAFDYLSWMR 419

Query: 426 ESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEH----YVSMINLLGR 481
             G  PN      +LS C    L+ +G ++   +  +     G +H    + ++I++  +
Sbjct: 420 REGPKPNEFALSSVLSVCGSMALLEQGKQVHAHLLCI-----GIDHEAMVHSAIISMYSK 474

Query: 482 AGKIKEAEEF 491
            G ++EA + 
Sbjct: 475 CGSVQEASKI 484



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 90/341 (26%), Positives = 140/341 (41%), Gaps = 28/341 (8%)

Query: 243 NGYIRFGRLEEAQNLFDTVPVRDE-----------ISWTSMIDGYLSVGQVSNAYYLFHN 291
           N YI  G   E + L    P++++           +   S +   +  GQ+  A Y+F  
Sbjct: 24  NRYILTGTATECRELIQQ-PIQEQPAENAYSVHNMLELNSELKQLVKQGQLCKARYMFDK 82

Query: 292 MPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNA-TFSVLFGAAGATANIDL 350
           M  RD ++WT +I+G V      EA  LF  M  H  P  +    SV   A     NI  
Sbjct: 83  MTHRDEISWTTLIAGYVNASDSYEALILFSNMWVHPGPQRDQFMISVALKACALGVNICF 142

Query: 351 GRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSH 410
           G  +H   +K+     + + + LI MY K G I+    +F  M++R++VSW +++ G  H
Sbjct: 143 GELLHGFSVKSGLIHSVFVSSALIDMYMKVGKIEQGCRVFEKMMTRNVVSWTAIIAGLVH 202

Query: 411 HGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPE 470
            G   E L  F  M  S    +S TF   L A + + L+  G  +         I+ G +
Sbjct: 203 AGYNMEGLLYFSEMWRSKVGYDSHTFAIALKASADSSLLHHGKAIHTQ-----TIKQGFD 257

Query: 471 HYVSMINLLGRAGKIKEAEEFVLRLPFE----PDHRIWGALLGA---CGFCEGNAEIAEH 523
               +IN L          ++V+RL FE    PD   W  L+      G  E   E  + 
Sbjct: 258 ESSFVINTLATMYNKCGKPDYVMRL-FEKMRMPDVVSWTTLISTYVQMGEEEHAVEAFKR 316

Query: 524 AAKRLLELDPLNAPAHVVLCNIYAAS--GRHVEEHKLRMDM 562
             K  +  +     A +  C   AA+  G  +  H LR+ +
Sbjct: 317 MRKSYVSPNKYTFAAVISSCANLAAAKWGEQIHGHVLRLGL 357



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 132/609 (21%), Positives = 226/609 (37%), Gaps = 151/609 (24%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNV--VS 75
           I  Y K G I++   +F+ M  RNVVS+ A+++G +  G   E    F EM    V   S
Sbjct: 166 IDMYMKVGKIEQGCRVFEKMMTRNVVSWTAIIAGLVHAGYNMEGLLYFSEMWRSKVGYDS 225

Query: 76  WTAMICGLADA-------GRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFN 128
            T  I   A A       G+    + + +   E + V  N++     + G+ +   ++F 
Sbjct: 226 HTFAIALKASADSSLLHHGKAIHTQTIKQGFDESSFVI-NTLATMYNKCGKPDYVMRLFE 284

Query: 129 SMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNV-------------------VTW 169
            M + +V+SW  +I+ YV+      A+  F+ M +  V                     W
Sbjct: 285 KMRMPDVVSWTTLISTYVQMGEEEHAVEAFKRMRKSYVSPNKYTFAAVISSCANLAAAKW 344

Query: 170 --------------------TSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAW 209
                                S+I+ Y + G ++    +F  + RK+++SW+ +I  ++ 
Sbjct: 345 GEQIHGHVLRLGLVNALSVANSIITLYSKCGLLKSASLVFHGITRKDIISWSTIISVYSQ 404

Query: 210 NGFHKESLLLFIEMKGICDNGNNCNVQS----CNSM------------------------ 241
            G+ KE+      M+      N   + S    C SM                        
Sbjct: 405 GGYAKEAFDYLSWMRREGPKPNEFALSSVLSVCGSMALLEQGKQVHAHLLCIGIDHEAMV 464

Query: 242 ----INGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDA 297
               I+ Y + G ++EA  +F+ + + D ISWT+MI+GY   G                 
Sbjct: 465 HSAIISMYSKCGSVQEASKIFNGMKINDIISWTAMINGYAEHGYSQ-------------- 510

Query: 298 VAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCV 357
                            EA  LF ++ + G+ P    F  +  A      +DLG   + +
Sbjct: 511 -----------------EAINLFEKISSVGLKPDYVMFIGVLTACNHAGMVDLGF-YYFM 552

Query: 358 LMKTESESDLILEN--CLISMYAKCGVIDNAYNIFSNM-VSRDLVSWNSMVMGFSHHGLA 414
           LM          E+  CLI +  + G +  A +I  +M    D V W++++     HG  
Sbjct: 553 LMTNVYRISPSKEHYGCLIDLLCRAGRLSEAEHIIRSMPFHTDDVVWSTLLRACRVHGDV 612

Query: 415 NETLKVFESMLE-----SGTHPNSVTFLGILSA--------------CSHAGLVSRGW-- 453
           +      E +L+     +GTH   +T   I +A               S   +  RGW  
Sbjct: 613 DRGRWTAEQLLQLDPNSAGTH---ITLANIYAAKGRWKEAAHIRKLMKSKGVIKERGWSW 669

Query: 454 ----ELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLG 509
               +  NA     +  P  EH  +++ LL  +  I +A++ +  L     H     L  
Sbjct: 670 VNVNDQLNAFVAGDQAHPQSEHITTVLKLL--SANIGDAQQEIRSL-----HEDVEDLAY 722

Query: 510 ACGFCEGNA 518
           +C    GNA
Sbjct: 723 SCILSHGNA 731



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 72/277 (25%), Positives = 122/277 (44%), Gaps = 58/277 (20%)

Query: 16  SSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEM------P 69
           S IT YSK G +  A  +F  + +++++S++ ++S + Q G   EA      M      P
Sbjct: 366 SIITLYSKCGLLKSASLVFHGITRKDIISWSTIISVYSQGGYAKEAFDYLSWMRREGPKP 425

Query: 70  ERNVVSWTAMICG---LADAGRVCEARKL-----FEEMPERNVVSWNSMVVGLIRNGELN 121
               +S    +CG   L + G+   A  L      E M    ++S  S      + G + 
Sbjct: 426 NEFALSSVLSVCGSMALLEQGKQVHAHLLCIGIDHEAMVHSAIISMYS------KCGSVQ 479

Query: 122 EARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEME----ERNVVTWTSMISGYC 177
           EA K+FN M I ++ISW AMI GY E     EAI LFE++     + + V +  +++   
Sbjct: 480 EASKIFNGMKINDIISWTAMINGYAEHGYSQEAINLFEKISSVGLKPDYVMFIGVLTACN 539

Query: 178 RAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQS 237
            AG V+ G+  F  M     +S +            KE     I++  +C          
Sbjct: 540 HAGMVDLGFYYFMLMTNVYRISPS------------KEHYGCLIDL--LC---------- 575

Query: 238 CNSMINGYIRFGRLEEAQNLFDTVPVR-DEISWTSMI 273
                    R GRL EA+++  ++P   D++ W++++
Sbjct: 576 ---------RAGRLSEAEHIIRSMPFHTDDVVWSTLL 603


>gi|20146226|dbj|BAB89008.1| PPR repeat protein-like [Oryza sativa Japonica Group]
 gi|125573391|gb|EAZ14906.1| hypothetical protein OsJ_04836 [Oryza sativa Japonica Group]
          Length = 785

 Score =  283 bits (724), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 191/633 (30%), Positives = 310/633 (48%), Gaps = 65/633 (10%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNG-------RLSEARRLFEEMPE 70
           +  Y + G    A+ L   MP+RN VS+N ++  + + G        L+ ARR   ++  
Sbjct: 50  LAAYCRLGGPLPARRLLDEMPRRNAVSFNLLIDAYSREGLAPLSLETLARARRAGVDVDR 109

Query: 71  RN------------------VVSWTAMICGLADA--------------GRVCEARKLFEE 98
            +                   V   A++ GL+                G + EAR++F+ 
Sbjct: 110 FSYAAALAACSRAGHLRAGRAVHALAILDGLSSGVFVSNSLVSMYSKCGEMGEARRVFDV 169

Query: 99  MPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYV-ECCM------- 150
             ER+ VSWNS+V G +R G   E  +VF +M  +  +  N+   G V +CC        
Sbjct: 170 AEERDDVSWNSLVSGYVRAGAREEMVRVF-AMMRRGGMGLNSFALGSVIKCCSGRGDGTM 228

Query: 151 -MGEAI--VLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGF 207
            + EA+   + +   + +V   ++MI  Y + G + E   LFR +   NVV +  MI GF
Sbjct: 229 DIAEAVHGCVIKAGLDSDVFLVSAMIDMYAKKGALVEAAALFRSVQEPNVVMFNTMIAGF 288

Query: 208 AWNG------FHKESLLLFIEMKG----ICDNGNNCNVQSCNSMINGYIRFGRLEEAQNL 257
                        E+L L+ E++       +   +  +++CN  + GY+ FG+    Q +
Sbjct: 289 CRTETVIGKEVASEALTLYSEVQSRGMQPTEFTFSSVLRACN--LAGYLEFGKQIHGQVI 346

Query: 258 FDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEAT 317
             T    D+   +++ID Y + G + + +  F + P  D V WTAM+SG VQNEL  +A 
Sbjct: 347 KYTFQ-EDDFIGSALIDLYFNSGCMEDGFRCFRSSPKHDIVTWTAMVSGCVQNELHEKAL 405

Query: 318 YLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMY 377
            LF E    G+ P   T S +  A  + A    G QI C   K+  +   ++ N  + MY
Sbjct: 406 SLFHESLGAGLKPDLFTISSVMNACASLAVARAGEQIQCFATKSGFDRFTVMGNSCVHMY 465

Query: 378 AKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFL 437
           A+ G +D A   F  M S D+VSW++++   + HG A + L  F+ M+++   PN +TFL
Sbjct: 466 ARSGDVDAATRRFQEMESHDVVSWSAVISCHAQHGCARDALHFFDEMVDAKVVPNEITFL 525

Query: 438 GILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPF 497
           G+L+ACSH GLV  G   +  M   Y + P  +H   +++LLGRAG++ +AE F+    F
Sbjct: 526 GVLTACSHGGLVDEGLRYYETMTKDYGLSPTIKHCTCVVDLLGRAGRLADAEAFISNSIF 585

Query: 498 EPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHK 557
             D  IW +LL +C     + E  +  A R++EL+P ++ ++V+L N+Y  +G      K
Sbjct: 586 HADPVIWRSLLASCRI-HRDLERGQLVANRIMELEPTSSASYVILYNMYLDAGELSLASK 644

Query: 558 LRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDK 590
            R  M  +GV+K PG SW+    G+  F++GDK
Sbjct: 645 TRDLMKQRGVKKEPGLSWIELKCGVHSFVAGDK 677



 Score =  149 bits (375), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 126/510 (24%), Positives = 227/510 (44%), Gaps = 65/510 (12%)

Query: 38  PQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAG-------RVC 90
           P  ++   N +L+ + + G    ARRL +EMP RN VS+  +I   +  G        + 
Sbjct: 39  PAASLFLRNTLLAAYCRLGGPLPARRLLDEMPRRNAVSFNLLIDAYSREGLAPLSLETLA 98

Query: 91  EARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVIS-----WNAMIAGY 145
            AR+   ++   +  S+ + +    R G L   R V +++ I + +S      N++++ Y
Sbjct: 99  RARRAGVDV---DRFSYAAALAACSRAGHLRAGRAV-HALAILDGLSSGVFVSNSLVSMY 154

Query: 146 VECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIG 205
            +C  MGEA  +F+  EER+ V+W S++SGY RAG  EE   +F  M R          G
Sbjct: 155 SKCGEMGEARRVFDVAEERDDVSWNSLVSGYVRAGAREEMVRVFAMMRR----------G 204

Query: 206 GFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRD 265
           G   N F   S++        C +G           ++G +    L+            D
Sbjct: 205 GMGLNSFALGSVIK-------CCSGRGDGTMDIAEAVHGCVIKAGLDS-----------D 246

Query: 266 EISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFV------EATYL 319
               ++MID Y   G +  A  LF ++ + + V +  MI+G  + E  +      EA  L
Sbjct: 247 VFLVSAMIDMYAKKGALVEAAALFRSVQEPNVVMFNTMIAGFCRTETVIGKEVASEALTL 306

Query: 320 FMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAK 379
           + E+++ G+ P   TFS +  A      ++ G+QIH  ++K   + D  + + LI +Y  
Sbjct: 307 YSEVQSRGMQPTEFTFSSVLRACNLAGYLEFGKQIHGQVIKYTFQEDDFIGSALIDLYFN 366

Query: 380 CGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGI 439
            G +++ +  F +    D+V+W +MV G   + L  + L +F   L +G  P+  T   +
Sbjct: 367 SGCMEDGFRCFRSSPKHDIVTWTAMVSGCVQNELHEKALSLFHESLGAGLKPDLFTISSV 426

Query: 440 LSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSM----INLLGRAGKIKEAEEFVLRL 495
           ++AC+   +   G ++       +  + G + +  M    +++  R+G +  A     R 
Sbjct: 427 MNACASLAVARAGEQI-----QCFATKSGFDRFTVMGNSCVHMYARSGDVDAATR---RF 478

Query: 496 PFEPDHRI--WGALLGACGFCEGNAEIAEH 523
                H +  W A++ +C    G A  A H
Sbjct: 479 QEMESHDVVSWSAVI-SCHAQHGCARDALH 507



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 111/452 (24%), Positives = 198/452 (43%), Gaps = 66/452 (14%)

Query: 16  SSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMP------ 69
           S ++ YSK G + EA+ +F +  +R+ VS+N+++SG+++ G   E  R+F  M       
Sbjct: 149 SLVSMYSKCGEMGEARRVFDVAEERDDVSWNSLVSGYVRAGAREEMVRVFAMMRRGGMGL 208

Query: 70  -----------------------------------ERNVVSWTAMICGLADAGRVCEARK 94
                                              + +V   +AMI   A  G + EA  
Sbjct: 209 NSFALGSVIKCCSGRGDGTMDIAEAVHGCVIKAGLDSDVFLVSAMIDMYAKKGALVEAAA 268

Query: 95  LFEEMPERNVVSWNSMVVGLIRNGEL------NEARKVFNSMPIKNV----ISWNAM--- 141
           LF  + E NVV +N+M+ G  R   +      +EA  +++ +  + +     +++++   
Sbjct: 269 LFRSVQEPNVVMFNTMIAGFCRTETVIGKEVASEALTLYSEVQSRGMQPTEFTFSSVLRA 328

Query: 142 --IAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVS 199
             +AGY+E        V+    +E + +  +++I  Y  +G +E+G+  FR  P+ ++V+
Sbjct: 329 CNLAGYLEFGKQIHGQVIKYTFQEDDFI-GSALIDLYFNSGCMEDGFRCFRSSPKHDIVT 387

Query: 200 WTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMIN--GYIRFGRLEEAQNL 257
           WTAM+ G   N  H+++L LF E  G    G   ++ + +S++N    +   R  E    
Sbjct: 388 WTAMVSGCVQNELHEKALSLFHESLGA---GLKPDLFTISSVMNACASLAVARAGEQIQC 444

Query: 258 FDTVPVRDEIS--WTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVE 315
           F T    D  +    S +  Y   G V  A   F  M   D V+W+A+IS   Q+    +
Sbjct: 445 FATKSGFDRFTVMGNSCVHMYARSGDVDAATRRFQEMESHDVVSWSAVISCHAQHGCARD 504

Query: 316 ATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILE-NCLI 374
           A + F EM    V P   TF  +  A      +D G + +  + K    S  I    C++
Sbjct: 505 ALHFFDEMVDAKVVPNEITFLGVLTACSHGGLVDEGLRYYETMTKDYGLSPTIKHCTCVV 564

Query: 375 SMYAKCGVIDNAYNIFSNMV-SRDLVSWNSMV 405
            +  + G + +A    SN +   D V W S++
Sbjct: 565 DLLGRAGRLADAEAFISNSIFHADPVIWRSLL 596



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 68/271 (25%), Positives = 115/271 (42%), Gaps = 22/271 (8%)

Query: 271 SMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPP 330
           +++  Y  +G    A  L   MP R+AV++  +I    +  L   +       R  GV  
Sbjct: 48  TLLAAYCRLGGPLPARRLLDEMPRRNAVSFNLLIDAYSREGLAPLSLETLARARRAGVDV 107

Query: 331 LNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIF 390
              +++    A     ++  GR +H + +     S + + N L+SMY+KCG +  A  +F
Sbjct: 108 DRFSYAAALAACSRAGHLRAGRAVHALAILDGLSSGVFVSNSLVSMYSKCGEMGEARRVF 167

Query: 391 SNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVS 450
                RD VSWNS+V G+   G   E ++VF  M   G   NS     ++  CS  G   
Sbjct: 168 DVAEERDDVSWNSLVSGYVRAGAREEMVRVFAMMRRGGMGLNSFALGSVIKCCSGRG--- 224

Query: 451 RGWELFNAMFDVYK------IQPGPEHYV----SMINLLGRAGKIKEAEEFVLRLPFEPD 500
                 +   D+ +      I+ G +  V    +MI++  + G + EA   + R   EP+
Sbjct: 225 ------DGTMDIAEAVHGCVIKAGLDSDVFLVSAMIDMYAKKGALVEAAA-LFRSVQEPN 277

Query: 501 HRIWGALLGACGFCEGNAEIAEHAAKRLLEL 531
             ++  ++   GFC     I +  A   L L
Sbjct: 278 VVMFNTMIA--GFCRTETVIGKEVASEALTL 306



 Score = 72.0 bits (175), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 64/269 (23%), Positives = 118/269 (43%), Gaps = 55/269 (20%)

Query: 9   SLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRL------SEAR 62
           S V  +++ I  Y+K+G + EA ALF+ + + NVV +N M++GF +   +      SEA 
Sbjct: 245 SDVFLVSAMIDMYAKKGALVEAAALFRSVQEPNVVMFNTMIAGFCRTETVIGKEVASEAL 304

Query: 63  RLFEEMPERNV------VSWTAMICGLA---DAGRVCEARKLFEEMPERNVVSWNSMVVG 113
            L+ E+  R +       S     C LA   + G+    + +     E + +  ++++  
Sbjct: 305 TLYSEVQSRGMQPTEFTFSSVLRACNLAGYLEFGKQIHGQVIKYTFQEDDFIG-SALIDL 363

Query: 114 LIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEME----------- 162
              +G + +  + F S P  ++++W AM++G V+  +  +A+ LF E             
Sbjct: 364 YFNSGCMEDGFRCFRSSPKHDIVTWTAMVSGCVQNELHEKALSLFHESLGAGLKPDLFTI 423

Query: 163 ----------------------------ERNVVTWTSMISGYCRAGEVEEGYCLFRRMPR 194
                                       +R  V   S +  Y R+G+V+     F+ M  
Sbjct: 424 SSVMNACASLAVARAGEQIQCFATKSGFDRFTVMGNSCVHMYARSGDVDAATRRFQEMES 483

Query: 195 KNVVSWTAMIGGFAWNGFHKESLLLFIEM 223
            +VVSW+A+I   A +G  +++L  F EM
Sbjct: 484 HDVVSWSAVISCHAQHGCARDALHFFDEM 512



 Score = 48.1 bits (113), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 37/138 (26%), Positives = 69/138 (50%), Gaps = 10/138 (7%)

Query: 16  SSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVV- 74
           S +  Y++ G +D A   FQ M   +VVS++A++S   Q+G   +A   F+EM +  VV 
Sbjct: 460 SCVHMYARSGDVDAATRRFQEMESHDVVSWSAVISCHAQHGCARDALHFFDEMVDAKVVP 519

Query: 75  ---SWTAMICGLADAGRVCEARKLFEEMPE----RNVVSWNSMVVGLI-RNGELNEARK- 125
              ++  ++   +  G V E  + +E M +       +   + VV L+ R G L +A   
Sbjct: 520 NEITFLGVLTACSHGGLVDEGLRYYETMTKDYGLSPTIKHCTCVVDLLGRAGRLADAEAF 579

Query: 126 VFNSMPIKNVISWNAMIA 143
           + NS+   + + W +++A
Sbjct: 580 ISNSIFHADPVIWRSLLA 597


>gi|413919600|gb|AFW59532.1| hypothetical protein ZEAMMB73_249815 [Zea mays]
          Length = 886

 Score =  283 bits (724), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 181/604 (29%), Positives = 302/604 (50%), Gaps = 65/604 (10%)

Query: 39  QRNVVSYNAMLSGFLQNGRLSEARRLFEEMPER---NVVSWTAMICGLADAGRVCEARKL 95
           + NV   NA+++ + + G L +A  +F+E+  +   +V+SW +++           A +L
Sbjct: 181 ESNVFVCNALVAMYSRCGSLEDASLVFDEITRKGIDDVISWNSIVAAHVKGSNPRTALEL 240

Query: 96  FEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMP----------IKNVISW------- 138
           F EM         SM+V      E ++   + N +P          IK + S+       
Sbjct: 241 FSEM---------SMIVHEKATNERSDIISIVNILPACASLKALPQIKEIHSYAIRNGTF 291

Query: 139 ------NAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRM 192
                 NA+I  Y +C  M +A+ +F  ME ++VV+W +M++GY ++G     + LF  M
Sbjct: 292 ADAFVCNALIDTYAKCGSMNDAVKVFNVMEFKDVVSWNAMVTGYTQSGNFGAAFELFENM 351

Query: 193 PRKN----VVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRF 248
            ++N    V++W+A+I G+A  G  +E+L  F +M  I D G+  N  +  S+++     
Sbjct: 352 RKENIPLDVITWSAVIAGYAQRGCSQEALDAFQQM--ILD-GSEPNSVTIISLLSACASL 408

Query: 249 GRLEEAQNLFDTVPVRDEIS----------------WTSMIDGYLSVGQVSNAYYLFHNM 292
           G L +   +      +  +S                + ++ID Y        A  +F ++
Sbjct: 409 GALSQGMEIHAYSLKKCLLSLDNDFGGDGDGEDLMVYNALIDMYSKCRSFKAARSIFDSI 468

Query: 293 P--DRDAVAWTAMISGLVQNELFVEATYLFMEM--RAHGVPPLNATFSVLFGAAGATANI 348
           P  +R+ V WT MI G  Q     +A  +F EM  + + V P   T S +  A    A +
Sbjct: 469 PRRERNVVTWTVMIGGYAQYGDSNDALKIFSEMISKPYAVAPNAYTISCILMACAHLAAL 528

Query: 349 DLGRQIHCVLMKTES--ESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVM 406
            +G+QIH  + +      S   + NCLI MY+KCG +D A N+F +M  R+ VSW SM+ 
Sbjct: 529 RMGKQIHAYVTRHHEYEPSVYFVANCLIDMYSKCGDVDTARNVFDSMPKRNEVSWTSMMS 588

Query: 407 GFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQ 466
           G+  HG   E L +F+ M ++G  P+ ++FL +L ACSH+G+V +G   F+ M   Y + 
Sbjct: 589 GYGMHGRGKEALDIFDKMQKAGFVPDDISFLVLLYACSHSGMVDQGLNYFDIMRRDYDVV 648

Query: 467 PGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAK 526
              EHY  +I+LL R G++ +A + +  +P EP   IW ALL AC     N E+AE+A  
Sbjct: 649 ASAEHYACVIDLLARCGRLDKAWKTIQEMPMEPSAVIWVALLSACRV-HSNVELAEYALN 707

Query: 527 RLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFL 586
           +L+ +   N  ++ ++ NIYA + R  +  ++R  M   G++K PGCSW+    G   F 
Sbjct: 708 KLVNMKAENDGSYTLISNIYANARRWKDVARIRQLMKKSGIKKRPGCSWVQGKKGTASFF 767

Query: 587 SGDK 590
            GD+
Sbjct: 768 VGDR 771



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 108/411 (26%), Positives = 183/411 (44%), Gaps = 69/411 (16%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERN----V 73
           I  Y+K G +++A  +F +M  ++VVS+NAM++G+ Q+G    A  LFE M + N    V
Sbjct: 301 IDTYAKCGSMNDAVKVFNVMEFKDVVSWNAMVTGYTQSGNFGAAFELFENMRKENIPLDV 360

Query: 74  VSWTAMICGLADAGRVCEARKLFEEM----PERNVVSWNSMVVGLIRNGELNEARKVFNS 129
           ++W+A+I G A  G   EA   F++M     E N V+  S++      G L++  ++   
Sbjct: 361 ITWSAVIAGYAQRGCSQEALDAFQQMILDGSEPNSVTIISLLSACASLGALSQGMEIHAY 420

Query: 130 MPIKNVIS----------------WNAMIAGYVECCMMGEAIVLFEEM--EERNVVTWTS 171
              K ++S                +NA+I  Y +C     A  +F+ +   ERNVVTWT 
Sbjct: 421 SLKKCLLSLDNDFGGDGDGEDLMVYNALIDMYSKCRSFKAARSIFDSIPRRERNVVTWTV 480

Query: 172 MISGYCRAGEVEEGYCLFRRMPRK--NVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDN 229
           MI GY + G+  +   +F  M  K   V      I        H  +L +  ++      
Sbjct: 481 MIGGYAQYGDSNDALKIFSEMISKPYAVAPNAYTISCILMACAHLAALRMGKQIHAYVTR 540

Query: 230 GNNCNVQ---SCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAY 286
            +          N +I+ Y + G ++ A+N+FD++P R+E+SWTSM+ GY   G+     
Sbjct: 541 HHEYEPSVYFVANCLIDMYSKCGDVDTARNVFDSMPKRNEVSWTSMMSGYGMHGRGK--- 597

Query: 287 YLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATA 346
                                       EA  +F +M+  G  P + +F VL  A   + 
Sbjct: 598 ----------------------------EALDIFDKMQKAGFVPDDISFLVLLYACSHSG 629

Query: 347 NIDLGRQIHCVLMKTESESDLILE----NCLISMYAKCGVIDNAYNIFSNM 393
            +D G     ++ +   + D++       C+I + A+CG +D A+     M
Sbjct: 630 MVDQGLNYFDIMRR---DYDVVASAEHYACVIDLLARCGRLDKAWKTIQEM 677



 Score =  102 bits (254), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 86/369 (23%), Positives = 148/369 (40%), Gaps = 90/369 (24%)

Query: 139 NAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPR---- 194
             ++A Y+ C    +A+ + E +     V W  ++  + + G ++    +  RM R    
Sbjct: 87  TGVVASYLACGATKDALSVLERVTPSPAVWWNLLVREHIKEGHLDRAIGVSCRMLRAGTK 146

Query: 195 ----------KNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMING 244
                     K      +   G A +G              IC NG   NV  CN+++  
Sbjct: 147 PDHFTLPYALKACGELPSYCCGRALHGL-------------ICCNGFESNVFVCNALVAM 193

Query: 245 YIRFGRLEEAQNLFDTVP---VRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWT 301
           Y R G LE+A  +FD +    + D ISW S++  ++       A                
Sbjct: 194 YSRCGSLEDASLVFDEITRKGIDDVISWNSIVAAHVKGSNPRTAL--------------- 238

Query: 302 AMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKT 361
                    ELF E + +  E   +    + +  ++L   A   A   + ++IH   ++ 
Sbjct: 239 ---------ELFSEMSMIVHEKATNERSDIISIVNILPACASLKALPQI-KEIHSYAIRN 288

Query: 362 ESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFS------------ 409
            + +D  + N LI  YAKCG +++A  +F+ M  +D+VSWN+MV G++            
Sbjct: 289 GTFADAFVCNALIDTYAKCGSMNDAVKVFNVMEFKDVVSWNAMVTGYTQSGNFGAAFELF 348

Query: 410 -----------------------HHGLANETLKVFESMLESGTHPNSVTFLGILSACSHA 446
                                    G + E L  F+ M+  G+ PNSVT + +LSAC+  
Sbjct: 349 ENMRKENIPLDVITWSAVIAGYAQRGCSQEALDAFQQMILDGSEPNSVTIISLLSACASL 408

Query: 447 GLVSRGWEL 455
           G +S+G E+
Sbjct: 409 GALSQGMEI 417



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 56/252 (22%), Positives = 113/252 (44%), Gaps = 19/252 (7%)

Query: 270 TSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVP 329
           T ++  YL+ G   +A  +   +    AV W  ++   ++      A  +   M   G  
Sbjct: 87  TGVVASYLACGATKDALSVLERVTPSPAVWWNLLVREHIKEGHLDRAIGVSCRMLRAGTK 146

Query: 330 PLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNI 389
           P + T      A G   +   GR +H ++     ES++ + N L++MY++CG +++A  +
Sbjct: 147 PDHFTLPYALKACGELPSYCCGRALHGLICCNGFESNVFVCNALVAMYSRCGSLEDASLV 206

Query: 390 FSNMVSR---DLVSWNSMVMGFSHHGLANETLKVFESML----ESGTHPNS--VTFLGIL 440
           F  +  +   D++SWNS+V            L++F  M     E  T+  S  ++ + IL
Sbjct: 207 FDEITRKGIDDVISWNSIVAAHVKGSNPRTALELFSEMSMIVHEKATNERSDIISIVNIL 266

Query: 441 SACSHAGLVSRGWELFNAMFDVYKIQPG--PEHYV--SMINLLGRAGKIKEAEEFVLRLP 496
            AC+    + +  E+ +     Y I+ G   + +V  ++I+   + G + +A +    + 
Sbjct: 267 PACASLKALPQIKEIHS-----YAIRNGTFADAFVCNALIDTYAKCGSMNDAVKVFNVME 321

Query: 497 FEPDHRIWGALL 508
           F+ D   W A++
Sbjct: 322 FK-DVVSWNAMV 332



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/153 (28%), Positives = 83/153 (54%), Gaps = 12/153 (7%)

Query: 4   RNHPKSLVVHLTSS--ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEA 61
           R+H     V+  ++  I  YSK G +D A+ +F  MP+RN VS+ +M+SG+  +GR  EA
Sbjct: 540 RHHEYEPSVYFVANCLIDMYSKCGDVDTARNVFDSMPKRNEVSWTSMMSGYGMHGRGKEA 599

Query: 62  RRLFEEMPERNVV----SWTAMICGLADAGRVCEARKLFEEM-PERNVVS----WNSMVV 112
             +F++M +   V    S+  ++   + +G V +    F+ M  + +VV+    +  ++ 
Sbjct: 600 LDIFDKMQKAGFVPDDISFLVLLYACSHSGMVDQGLNYFDIMRRDYDVVASAEHYACVID 659

Query: 113 GLIRNGELNEARKVFNSMPIK-NVISWNAMIAG 144
            L R G L++A K    MP++ + + W A+++ 
Sbjct: 660 LLARCGRLDKAWKTIQEMPMEPSAVIWVALLSA 692


>gi|125529330|gb|EAY77444.1| hypothetical protein OsI_05438 [Oryza sativa Indica Group]
          Length = 813

 Score =  283 bits (724), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 195/642 (30%), Positives = 305/642 (47%), Gaps = 74/642 (11%)

Query: 25  GFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEA------RRLFEE--MPERNVVSW 76
           G +  A  LF  +P  +V +YN ++  +  +   + A      RR+      P      +
Sbjct: 71  GHLSRAHHLFDQIPSPDVRTYNDLIRAYSSSSPTAAADGLHLYRRMLRHRVAPNNYTFPF 130

Query: 77  TAMIC-GLAD--AGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIK 133
               C  LAD   GR      +   +     VS  +++   ++   L +A  +F +MP +
Sbjct: 131 ALKACSALADHHCGRAIHRHAIHAGLQADLFVS-TALLDMYVKCACLPDAAHIFATMPAR 189

Query: 134 NVISWNAMIAGYVECCMMGEAIVLFEEME------------------------------- 162
           ++++WNAM+AGY    M   A+     M+                               
Sbjct: 190 DLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQGTS 249

Query: 163 ------------ERN--------VVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTA 202
                        RN        V+  T+++  Y + G +     +F  MP +N V+W+A
Sbjct: 250 VHAYRIRACLHSNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEVTWSA 309

Query: 203 MIGGFAWNGFHKESLLLFIEM--KGIC---DNGNNCNVQSCNSMINGYIRFGRLEEAQNL 257
           +IGGF       ++ LLF  M  +G+C          +++C S+   ++R G  E+   L
Sbjct: 310 LIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIASALRACASL--DHLRMG--EQLHAL 365

Query: 258 FDTVPVR-DEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEA 316
                V  D  +  S++  Y   G +  A  LF  M  +D V+++A++SG VQN    EA
Sbjct: 366 LAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGYVQNGRAEEA 425

Query: 317 TYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISM 376
             +F +M+A  V P  AT   L  A    A +  GR  H  ++     S+  + N LI M
Sbjct: 426 FLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIRGLASETSICNALIDM 485

Query: 377 YAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTF 436
           YAKCG ID +  +F+ M SRD+VSWN+M+ G+  HGL  E   +F  M   G  P+ VTF
Sbjct: 486 YAKCGRIDLSRQVFNMMPSRDIVSWNTMIAGYGIHGLGKEATALFLEMNNLGFPPDGVTF 545

Query: 437 LGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLP 496
           + +LSACSH+GLV  G   F+ M   Y + P  EHY+ M++LL R G + EA EF+  +P
Sbjct: 546 ICLLSACSHSGLVIEGKHWFHVMRHGYGLTPRMEHYICMVDLLSRGGFLDEAYEFIQSMP 605

Query: 497 FEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEH 556
              D R+W ALLGAC   + N ++ +  ++ + EL P      V+L NIY+A+GR  E  
Sbjct: 606 LRADVRVWVALLGACRVYK-NIDLGKKVSRMIQELGPEGTGNFVLLSNIYSAAGRFDEAA 664

Query: 557 KLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
           ++R+   ++G +K PGCSW+  NG +  F+ GD+   Q  EI
Sbjct: 665 EVRIIQKVQGFKKSPGCSWIEINGSLHAFVGGDQSHPQSPEI 706



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 66/254 (25%), Positives = 117/254 (46%), Gaps = 16/254 (6%)

Query: 276 YLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEAT--YLFMEMRAHGVPPLNA 333
           +++ G +S A++LF  +P  D   +  +I     +     A   +L+  M  H V P N 
Sbjct: 67  HIASGHLSRAHHLFDQIPSPDVRTYNDLIRAYSSSSPTAAADGLHLYRRMLRHRVAPNNY 126

Query: 334 TFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNM 393
           TF     A  A A+   GR IH   +    ++DL +   L+ MY KC  + +A +IF+ M
Sbjct: 127 TFPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFATM 186

Query: 394 VSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTH---PNSVTFLGILSACSHAGLVS 450
            +RDLV+WN+M+ G++HHG+ +  +    SM +   H   PN+ T + +L   +  G ++
Sbjct: 187 PARDLVAWNAMLAGYAHHGMYHHAVAHLLSM-QMQMHRLRPNASTLVALLPLLAQQGALA 245

Query: 451 RGWE---------LFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDH 501
           +G           L +      K+  G     +++++  + G +  A      +P   + 
Sbjct: 246 QGTSVHAYRIRACLHSNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPAR-NE 304

Query: 502 RIWGALLGACGFCE 515
             W AL+G    C 
Sbjct: 305 VTWSALIGGFVLCS 318



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 83/348 (23%), Positives = 158/348 (45%), Gaps = 65/348 (18%)

Query: 15  TSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVV 74
           T+ +  Y+K G +  A+ +F  MP RN V+++A++ GF+   R+++A  LF+ M  + + 
Sbjct: 277 TALLDMYAKCGSLLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLC 336

Query: 75  SWTAMICGLADAGRVC---EARKLFEEMP--------ERNVVSWNSMVVGLIRNGELNEA 123
             +     +A A R C   +  ++ E++           ++ + NS++    + G +++A
Sbjct: 337 FLSPT--SIASALRACASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQA 394

Query: 124 RKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNV----VTWTSMISG---- 175
             +F+ M +K+ +S++A+++GYV+     EA ++F++M+  NV     T  S+I      
Sbjct: 395 IALFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHL 454

Query: 176 -------------------------------YCRAGEVEEGYCLFRRMPRKNVVSWTAMI 204
                                          Y + G ++    +F  MP +++VSW  MI
Sbjct: 455 AALQHGRCSHGSVIIRGLASETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMI 514

Query: 205 GGFAWNGFHKESLLLFIEMK--GICDNGNN--CNVQSCNS---MINGYIRFGRLEEAQNL 257
            G+  +G  KE+  LF+EM   G   +G    C + +C+    +I G   F  +     L
Sbjct: 515 AGYGIHGLGKEATALFLEMNNLGFPPDGVTFICLLSACSHSGLVIEGKHWFHVMRHGYGL 574

Query: 258 FDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDR-DAVAWTAMI 304
               P  +   +  M+D     G +  AY    +MP R D   W A++
Sbjct: 575 ---TPRMEH--YICMVDLLSRGGFLDEAYEFIQSMPLRADVRVWVALL 617


>gi|356521082|ref|XP_003529187.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Glycine max]
          Length = 780

 Score =  283 bits (724), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 189/624 (30%), Positives = 316/624 (50%), Gaps = 56/624 (8%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFE----EMPERNV 73
           +  Y   GF+++A  LF  MP  N VS+  +  GF ++ +   ARRL      E  E N 
Sbjct: 45  LNTYVHFGFLEDASKLFDEMPLTNTVSFVTLAQGFSRSHQFQRARRLLLRLFREGYEVNQ 104

Query: 74  VSWTAMICGLA--DAGRVCEA--RKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNS 129
             +T ++  L   D    C +    +++   + +     +++      G ++ AR+VF+ 
Sbjct: 105 FVFTTLLKLLVSMDLADTCLSVHAYVYKLGHQADAFVGTALIDAYSVCGNVDAARQVFDG 164

Query: 130 MPIKNVISWNAMIAGYVECCMMGEAIVLFEEME--------------------------- 162
           +  K+++SW  M+A Y E     ++++LF +M                            
Sbjct: 165 IYFKDMVSWTGMVACYAENYCHEDSLLLFCQMRIMGYRPNNFTISAALKSCNGLEAFKVG 224

Query: 163 ------------ERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWN 210
                       +R++    +++  Y ++GE+ E    F  MP+ +++ W+ MI  +A +
Sbjct: 225 KSVHGCALKVCYDRDLYVGIALLELYTKSGEIAEAQQFFEEMPKDDLIPWSLMISRYAQS 284

Query: 211 GFHKESLLLFIEMKG----ICDNGNNCNV-QSCNSMINGYIRFGRLEEAQNLFDTVPVRD 265
              KE+L LF  M+     + +N    +V Q+C S++   +  G    +  L   +    
Sbjct: 285 DKSKEALELFCRMRQSSVVVPNNFTFASVLQACASLV--LLNLGNQIHSCVLKVGLDSNV 342

Query: 266 EISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRA 325
            +S  +++D Y   G++ N+  LF    +++ VAW  +I G VQ     +A  LF  M  
Sbjct: 343 FVS-NALMDVYAKCGEIENSVKLFTGSTEKNEVAWNTIIVGYVQLGDGEKALNLFSNMLG 401

Query: 326 HGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDN 385
             + P   T+S +  A+ +   ++ GRQIH + +KT    D ++ N LI MYAKCG ID+
Sbjct: 402 LDIQPTEVTYSSVLRASASLVALEPGRQIHSLTIKTMYNKDSVVANSLIDMYAKCGRIDD 461

Query: 386 AYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSH 445
           A   F  M  +D VSWN+++ G+S HGL  E L +F+ M +S + PN +TF+G+LSACS+
Sbjct: 462 ARLTFDKMDKQDEVSWNALICGYSIHGLGMEALNLFDMMQQSNSKPNKLTFVGVLSACSN 521

Query: 446 AGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWG 505
           AGL+ +G   F +M   Y I+P  EHY  M+ LLGR+G+  EA + +  +PF+P   +W 
Sbjct: 522 AGLLDKGRAHFKSMLQDYGIEPCIEHYTCMVWLLGRSGQFDEAVKLIGEIPFQPSVMVWR 581

Query: 506 ALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLK 565
           ALLGAC     N ++ +  A+R+LE++P +   HV+L N+YA + R      +R +M  K
Sbjct: 582 ALLGAC-VIHKNLDLGKVCAQRVLEMEPQDDATHVLLSNMYATAKRWDNVAYVRKNMKKK 640

Query: 566 GVRKVPGCSWLMRNGGIQMFLSGD 589
            V+K PG SW+   G +  F  GD
Sbjct: 641 KVKKEPGLSWVENQGVVHYFTVGD 664



 Score =  105 bits (261), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 102/456 (22%), Positives = 193/456 (42%), Gaps = 46/456 (10%)

Query: 106 SWNSMVVGLIRNGELNEARK----VFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEM 161
           S+ +M+   IRN + N  +     +       ++ + N ++  YV    + +A  LF+EM
Sbjct: 5   SYANMLQQAIRNRDPNAGKSLHCHILKHGASLDLFAQNILLNTYVHFGFLEDASKLFDEM 64

Query: 162 EERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFI 221
              N V++ ++  G+ R+ + +              +       G+  N F   +LL  +
Sbjct: 65  PLTNTVSFVTLAQGFSRSHQFQR----------ARRLLLRLFREGYEVNQFVFTTLLKLL 114

Query: 222 EMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQ 281
               + D        +C S+     + G   +A               T++ID Y   G 
Sbjct: 115 VSMDLAD--------TCLSVHAYVYKLGHQADA------------FVGTALIDAYSVCGN 154

Query: 282 VSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGA 341
           V  A  +F  +  +D V+WT M++   +N    ++  LF +MR  G  P N T S    +
Sbjct: 155 VDAARQVFDGIYFKDMVSWTGMVACYAENYCHEDSLLLFCQMRIMGYRPNNFTISAALKS 214

Query: 342 AGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSW 401
                   +G+ +H   +K   + DL +   L+ +Y K G I  A   F  M   DL+ W
Sbjct: 215 CNGLEAFKVGKSVHGCALKVCYDRDLYVGIALLELYTKSGEIAEAQQFFEEMPKDDLIPW 274

Query: 402 NSMVMGFSHHGLANETLKVFESMLESG-THPNSVTFLGILSACSHAGLVSRGWELFNAMF 460
           + M+  ++    + E L++F  M +S    PN+ TF  +L AC+   L++ G ++ +   
Sbjct: 275 SLMISRYAQSDKSKEALELFCRMRQSSVVVPNNFTFASVLQACASLVLLNLGNQIHSC-- 332

Query: 461 DVYKIQPGPEHYVS--MINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCE-GN 517
            V K+      +VS  ++++  + G+I+ + + +     E +   W  ++   G+ + G+
Sbjct: 333 -VLKVGLDSNVFVSNALMDVYAKCGEIENSVK-LFTGSTEKNEVAWNTII--VGYVQLGD 388

Query: 518 AEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHV 553
            E A +    +L LD    P  V   ++  AS   V
Sbjct: 389 GEKALNLFSNMLGLDI--QPTEVTYSSVLRASASLV 422



 Score = 60.1 bits (144), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 41/141 (29%), Positives = 76/141 (53%), Gaps = 10/141 (7%)

Query: 16  SSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNV-- 73
           S I  Y+K G ID+A+  F  M +++ VS+NA++ G+  +G   EA  LF+ M + N   
Sbjct: 448 SLIDMYAKCGRIDDARLTFDKMDKQDEVSWNALICGYSIHGLGMEALNLFDMMQQSNSKP 507

Query: 74  --VSWTAMICGLADAGRVCEARKLFEEM-----PERNVVSWNSMVVGLIRNGELNEARKV 126
             +++  ++   ++AG + + R  F+ M      E  +  +  MV  L R+G+ +EA K+
Sbjct: 508 NKLTFVGVLSACSNAGLLDKGRAHFKSMLQDYGIEPCIEHYTCMVWLLGRSGQFDEAVKL 567

Query: 127 FNSMPIK-NVISWNAMIAGYV 146
              +P + +V+ W A++   V
Sbjct: 568 IGEIPFQPSVMVWRALLGACV 588


>gi|449433141|ref|XP_004134356.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
          Length = 654

 Score =  283 bits (724), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 168/524 (32%), Positives = 279/524 (53%), Gaps = 24/524 (4%)

Query: 92  ARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSM-----PIKNVISWNAMIAGYV 146
           A  +F    E +V++WNSM+   + +     A + +  M      + +  ++ +++ G  
Sbjct: 31  AYSVFAHTRELDVLTWNSMLRAFVNSNMPRRALQSYTEMLERSRNVPDRFTFPSLLKG-- 88

Query: 147 ECCMMGEAIV-------LFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVS 199
            C ++ E  V       + + M   ++   T++++ Y   G+++    LF RM  +N V 
Sbjct: 89  -CALLLEFKVGKVLHGQVVKYMLHSDLYIETTLLNMYAACGDLKSARFLFERMGHRNKVV 147

Query: 200 WTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFD 259
           WT+MI G+  N    E+LLL+ +M+   ++G + +  +  ++++       L     L  
Sbjct: 148 WTSMISGYMKNHCPNEALLLYKKME---EDGFSPDEVTMATLVSACAELKDLGVGMKLHS 204

Query: 260 TVPVRD----EISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVE 315
            +   D     +  +++++ Y   G +  A  +F  + D+D  AW+A+I G V+N    E
Sbjct: 205 HIREMDMKICAVLGSALVNMYAKCGDLKTARQVFDKLSDKDVYAWSALIFGYVKNNRSTE 264

Query: 316 ATYLFMEMRA-HGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLI 374
           A  LF E+     + P   T   +  A     +++ GR +H  + +T+    + L N LI
Sbjct: 265 ALQLFREVAGGSNMRPNEVTILAVISACAQLGDLETGRWVHDYITRTQKGHSVSLNNSLI 324

Query: 375 SMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSV 434
            M++KCG ID A  IF +M  +DL+SWNSMV GF+ HGL  E L  F  M  +   P+ +
Sbjct: 325 DMFSKCGDIDAAKRIFDSMSYKDLISWNSMVNGFALHGLGREALAQFRLMQTTDLQPDEI 384

Query: 435 TFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLR 494
           TF+G+L+ACSHAGLV  G +LF  +  +Y ++   EHY  M++LL RAG + EA EF+  
Sbjct: 385 TFIGVLTACSHAGLVQEGKKLFYEIEALYGVRLKSEHYGCMVDLLCRAGLLAEAREFIRV 444

Query: 495 LPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVE 554
           +P +PD  IWG++LGAC     N E+ E AA+ LL+L+P N   +++L NIYA      E
Sbjct: 445 MPLQPDGAIWGSMLGACRV-YNNLELGEEAARFLLKLEPTNDGVYILLSNIYAKRKMWNE 503

Query: 555 EHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
             K+R  M  KG++K PGCS ++ +     FL+GD    ++AEI
Sbjct: 504 VKKVRELMNEKGIQKTPGCSSVVIDNIAHSFLAGDCSHPEIAEI 547



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 99/438 (22%), Positives = 187/438 (42%), Gaps = 72/438 (16%)

Query: 30  AKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERN----------------- 72
           A ++F    + +V+++N+ML  F+ +     A + + EM ER+                 
Sbjct: 31  AYSVFAHTRELDVLTWNSMLRAFVNSNMPRRALQSYTEMLERSRNVPDRFTFPSLLKGCA 90

Query: 73  --------------VVSW---------TAMICGLADAGRVCEARKLFEEMPERNVVSWNS 109
                         VV +         T ++   A  G +  AR LFE M  RN V W S
Sbjct: 91  LLLEFKVGKVLHGQVVKYMLHSDLYIETTLLNMYAACGDLKSARFLFERMGHRNKVVWTS 150

Query: 110 MVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCM----MGEAIVLFEEMEERN 165
           M+ G ++N   NEA  ++  M           +A  V  C     +G  + L   + E +
Sbjct: 151 MISGYMKNHCPNEALLLYKKMEEDGFSPDEVTMATLVSACAELKDLGVGMKLHSHIREMD 210

Query: 166 V----VTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFI 221
           +    V  +++++ Y + G+++    +F ++  K+V +W+A+I G+  N    E+L LF 
Sbjct: 211 MKICAVLGSALVNMYAKCGDLKTARQVFDKLSDKDVYAWSALIFGYVKNNRSTEALQLFR 270

Query: 222 EMKGICDNGNNC--NVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDE---ISW-TSMIDG 275
           E+ G    G+N   N  +  ++I+   + G LE  + + D +    +   +S   S+ID 
Sbjct: 271 EVAG----GSNMRPNEVTILAVISACAQLGDLETGRWVHDYITRTQKGHSVSLNNSLIDM 326

Query: 276 YLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATF 335
           +   G +  A  +F +M  +D ++W +M++G   + L  EA   F  M+   + P   TF
Sbjct: 327 FSKCGDIDAAKRIFDSMSYKDLISWNSMVNGFALHGLGREALAQFRLMQTTDLQPDEITF 386

Query: 336 SVLFGAAGATANIDLGRQ-------IHCVLMKTESESDLILENCLISMYAKCGVIDNAYN 388
             +  A      +  G++       ++ V +K+E         C++ +  + G++  A  
Sbjct: 387 IGVLTACSHAGLVQEGKKLFYEIEALYGVRLKSEH------YGCMVDLLCRAGLLAEARE 440

Query: 389 IFSNM-VSRDLVSWNSMV 405
               M +  D   W SM+
Sbjct: 441 FIRVMPLQPDGAIWGSML 458



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 104/396 (26%), Positives = 183/396 (46%), Gaps = 47/396 (11%)

Query: 15  TSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPER--- 71
           T+ +  Y+  G +  A+ LF+ M  RN V + +M+SG+++N   +EA  L+++M E    
Sbjct: 118 TTLLNMYAACGDLKSARFLFERMGHRNKVVWTSMISGYMKNHCPNEALLLYKKMEEDGFS 177

Query: 72  -NVVSWTAMICGLADAGRVCEARKLFEEMPERNV----VSWNSMVVGLIRNGELNEARKV 126
            + V+   ++   A+   +    KL   + E ++    V  +++V    + G+L  AR+V
Sbjct: 178 PDEVTMATLVSACAELKDLGVGMKLHSHIREMDMKICAVLGSALVNMYAKCGDLKTARQV 237

Query: 127 FNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEME-----ERNVVTWTSMISGYCRAGE 181
           F+ +  K+V +W+A+I GYV+     EA+ LF E+        N VT  ++IS   + G+
Sbjct: 238 FDKLSDKDVYAWSALIFGYVKNNRSTEALQLFREVAGGSNMRPNEVTILAVISACAQLGD 297

Query: 182 VEEG---YCLFRRMPRKNVVSW-TAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQS 237
           +E G   +    R  + + VS   ++I  F+  G    +       K I D+ +  ++ S
Sbjct: 298 LETGRWVHDYITRTQKGHSVSLNNSLIDMFSKCGDIDAA-------KRIFDSMSYKDLIS 350

Query: 238 CNSMINGYIRFGRLEEAQNLF------DTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHN 291
            NSM+NG+   G   EA   F      D  P  DEI++  ++      G V     LF+ 
Sbjct: 351 WNSMVNGFALHGLGREALAQFRLMQTTDLQP--DEITFIGVLTACSHAGLVQEGKKLFYE 408

Query: 292 MPDRDAVA-----WTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATA 346
           +     V      +  M+  L +  L  EA      +R   + P  A +  + GA     
Sbjct: 409 IEALYGVRLKSEHYGCMVDLLCRAGLLAEAREF---IRVMPLQPDGAIWGSMLGACRVYN 465

Query: 347 NIDLGRQIHCVLMKTESESD---LILENCLISMYAK 379
           N++LG +    L+K E  +D   ++L N    +YAK
Sbjct: 466 NLELGEEAARFLLKLEPTNDGVYILLSN----IYAK 497



 Score = 59.3 bits (142), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 47/153 (30%), Positives = 77/153 (50%), Gaps = 13/153 (8%)

Query: 2   SERNHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEA 61
           +++ H  SL     S I  +SK G ID AK +F  M  ++++S+N+M++GF  +G   EA
Sbjct: 311 TQKGHSVSLN---NSLIDMFSKCGDIDAAKRIFDSMSYKDLISWNSMVNGFALHGLGREA 367

Query: 62  RRLFEEMPERNV----VSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNS-----MVV 112
              F  M   ++    +++  ++   + AG V E +KLF E+     V   S     MV 
Sbjct: 368 LAQFRLMQTTDLQPDEITFIGVLTACSHAGLVQEGKKLFYEIEALYGVRLKSEHYGCMVD 427

Query: 113 GLIRNGELNEARKVFNSMPIK-NVISWNAMIAG 144
            L R G L EAR+    MP++ +   W +M+  
Sbjct: 428 LLCRAGLLAEAREFIRVMPLQPDGAIWGSMLGA 460


>gi|356522365|ref|XP_003529817.1| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
           chloroplastic-like [Glycine max]
          Length = 882

 Score =  283 bits (724), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 186/639 (29%), Positives = 313/639 (48%), Gaps = 96/639 (15%)

Query: 46  NAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMP----- 100
           NA+LS F++ G L +A  +F  M +RN+ SW  ++ G A AG   EA  L+  M      
Sbjct: 145 NALLSMFVRFGNLVDAWYVFGRMEKRNLFSWNVLVGGYAKAGLFDEALDLYHRMLWVGVK 204

Query: 101 ----------------------------------ERNVVSWNSMVVGLIRNGELNEARKV 126
                                             E +V   N+++   ++ G++N AR V
Sbjct: 205 PDVYTFPCVLRTCGGMPNLVRGREIHVHVIRYGFESDVDVVNALITMYVKCGDVNTARLV 264

Query: 127 FNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEM----EERNVVTWTSMISG------- 175
           F+ MP ++ ISWNAMI+GY E  +  E + LF  M     + +++T TS+I+        
Sbjct: 265 FDKMPNRDRISWNAMISGYFENGVCLEGLRLFGMMIKYPVDPDLMTMTSVITACELLGDD 324

Query: 176 ----------------------------YCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGF 207
                                       Y   G +EE   +F R   +++VSWTAMI G+
Sbjct: 325 RLGRQIHGYVLRTEFGRDPSIHNSLIPMYSSVGLIEEAETVFSRTECRDLVSWTAMISGY 384

Query: 208 AWNGFHKESLLLF--IEMKGICDNGNNCNV--QSCNSMINGYIRFGRLEEAQNLFDTVPV 263
                 +++L  +  +E +GI  +     +   +C+ + N       L+   NL +    
Sbjct: 385 ENCLMPQKALETYKMMEAEGIMPDEITIAIVLSACSCLCN-------LDMGMNLHEVAKQ 437

Query: 264 RDEISWT----SMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYL 319
           +  +S++    S+ID Y     +  A  +FH+  +++ V+WT++I GL  N    EA + 
Sbjct: 438 KGLVSYSIVANSLIDMYAKCKCIDKALEIFHSTLEKNIVSWTSIILGLRINNRCFEALFF 497

Query: 320 FMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAK 379
           F EM    + P + T   +  A      +  G++IH   ++T    D  + N ++ MY +
Sbjct: 498 FREM-IRRLKPNSVTLVCVLSACARIGALTCGKEIHAHALRTGVSFDGFMPNAILDMYVR 556

Query: 380 CGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGI 439
           CG ++ A+  F + V  ++ SWN ++ G++  G      ++F+ M+ES   PN VTF+ I
Sbjct: 557 CGRMEYAWKQFFS-VDHEVTSWNILLTGYAERGKGAHATELFQRMVESNVSPNEVTFISI 615

Query: 440 LSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEP 499
           L ACS +G+V+ G E FN+M   Y I P  +HY  +++LLGR+GK++EA EF+ ++P +P
Sbjct: 616 LCACSRSGMVAEGLEYFNSMKYKYSIMPNLKHYACVVDLLGRSGKLEEAYEFIQKMPMKP 675

Query: 500 DHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLR 559
           D  +WGALL +C     + E+ E AA+ + + D  +   +++L N+YA +G+  +  ++R
Sbjct: 676 DPAVWGALLNSCRI-HHHVELGELAAENIFQDDTTSVGYYILLSNLYADNGKWDKVAEVR 734

Query: 560 MDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
             M   G+   PGCSW+   G +  FLS D    Q+ EI
Sbjct: 735 KMMRQNGLIVDPGCSWVEVKGTVHAFLSSDNFHPQIKEI 773



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 107/441 (24%), Positives = 193/441 (43%), Gaps = 58/441 (13%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEM----PERNV 73
           IT Y K G ++ A+ +F  MP R+ +S+NAM+SG+ +NG   E  RLF  M     + ++
Sbjct: 249 ITMYVKCGDVNTARLVFDKMPNRDRISWNAMISGYFENGVCLEGLRLFGMMIKYPVDPDL 308

Query: 74  VSWTAMICG---LADA--GRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFN 128
           ++ T++I     L D   GR      L  E   R+    NS++      G + EA  VF+
Sbjct: 309 MTMTSVITACELLGDDRLGRQIHGYVLRTEFG-RDPSIHNSLIPMYSSVGLIEEAETVFS 367

Query: 129 SMPIKNVISWNAMIAGYVECCMMGEAIVLFEEME-------------------------- 162
               ++++SW AMI+GY  C M  +A+  ++ ME                          
Sbjct: 368 RTECRDLVSWTAMISGYENCLMPQKALETYKMMEAEGIMPDEITIAIVLSACSCLCNLDM 427

Query: 163 ---------ERNVVTWT----SMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAW 209
                    ++ +V+++    S+I  Y +   +++   +F     KN+VSWT++I G   
Sbjct: 428 GMNLHEVAKQKGLVSYSIVANSLIDMYAKCKCIDKALEIFHSTLEKNIVSWTSIILGLRI 487

Query: 210 NGFHKESLLLFIEM-KGICDNGNN--CNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDE 266
           N    E+L  F EM + +  N     C + +C  +  G +  G+   A  L   V   D 
Sbjct: 488 NNRCFEALFFFREMIRRLKPNSVTLVCVLSACARI--GALTCGKEIHAHALRTGVSF-DG 544

Query: 267 ISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAH 326
               +++D Y+  G++  A+  F ++ D +  +W  +++G  +      AT LF  M   
Sbjct: 545 FMPNAILDMYVRCGRMEYAWKQFFSV-DHEVTSWNILLTGYAERGKGAHATELFQRMVES 603

Query: 327 GVPPLNATFSVLFGAAGATANIDLGRQ-IHCVLMKTESESDLILENCLISMYAKCGVIDN 385
            V P   TF  +  A   +  +  G +  + +  K     +L    C++ +  + G ++ 
Sbjct: 604 NVSPNEVTFISILCACSRSGMVAEGLEYFNSMKYKYSIMPNLKHYACVVDLLGRSGKLEE 663

Query: 386 AYNIFSNM-VSRDLVSWNSMV 405
           AY     M +  D   W +++
Sbjct: 664 AYEFIQKMPMKPDPAVWGALL 684



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 71/261 (27%), Positives = 122/261 (46%), Gaps = 32/261 (12%)

Query: 234 NVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMP 293
           ++Q  N++++ ++RFG L +A  +F  +  R+  SW  ++ GY   G    A  L+H M 
Sbjct: 140 SLQLGNALLSMFVRFGNLVDAWYVFGRMEKRNLFSWNVLVGGYAKAGLFDEALDLYHRM- 198

Query: 294 DRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQ 353
                 W                          GV P   TF  +    G   N+  GR+
Sbjct: 199 -----LWV-------------------------GVKPDVYTFPCVLRTCGGMPNLVRGRE 228

Query: 354 IHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGL 413
           IH  +++   ESD+ + N LI+MY KCG ++ A  +F  M +RD +SWN+M+ G+  +G+
Sbjct: 229 IHVHVIRYGFESDVDVVNALITMYVKCGDVNTARLVFDKMPNRDRISWNAMISGYFENGV 288

Query: 414 ANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYV 473
             E L++F  M++    P+ +T   +++AC   G    G ++   +    +    P  + 
Sbjct: 289 CLEGLRLFGMMIKYPVDPDLMTMTSVITACELLGDDRLGRQIHGYVLRT-EFGRDPSIHN 347

Query: 474 SMINLLGRAGKIKEAEEFVLR 494
           S+I +    G I+EAE    R
Sbjct: 348 SLIPMYSSVGLIEEAETVFSR 368



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 93/401 (23%), Positives = 176/401 (43%), Gaps = 66/401 (16%)

Query: 16  SSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGF---------LQNGRLSEARRLF- 65
           S I  YS  G I+EA+ +F     R++VS+ AM+SG+         L+  ++ EA  +  
Sbjct: 348 SLIPMYSSVGLIEEAETVFSRTECRDLVSWTAMISGYENCLMPQKALETYKMMEAEGIMP 407

Query: 66  EEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSW----NSMVVGLIRNGELN 121
           +E+    V+S  + +C L D G       L E   ++ +VS+    NS++    +   ++
Sbjct: 408 DEITIAIVLSACSCLCNL-DMG-----MNLHEVAKQKGLVSYSIVANSLIDMYAKCKCID 461

Query: 122 EARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEER---NVVTWTSMISGYCR 178
           +A ++F+S   KN++SW ++I G        EA+  F EM  R   N VT   ++S   R
Sbjct: 462 KALEIFHSTLEKNIVSWTSIILGLRINNRCFEALFFFREMIRRLKPNSVTLVCVLSACAR 521

Query: 179 AGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSC 238
            G +  G            +   A+  G +++GF                          
Sbjct: 522 IGALTCG----------KEIHAHALRTGVSFDGFMP------------------------ 547

Query: 239 NSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDA- 297
           N++++ Y+R GR+E A   F +V   +  SW  ++ GY   G+ ++A  LF  M + +  
Sbjct: 548 NAILDMYVRCGRMEYAWKQFFSVD-HEVTSWNILLTGYAERGKGAHATELFQRMVESNVS 606

Query: 298 ---VAWTAMISGLVQNELFVEATYLFMEMR-AHGVPPLNATFSVLFGAAGATANIDLGRQ 353
              V + +++    ++ +  E    F  M+  + + P    ++ +    G +  ++   +
Sbjct: 607 PNEVTFISILCACSRSGMVAEGLEYFNSMKYKYSIMPNLKHYACVVDLLGRSGKLEEAYE 666

Query: 354 -IHCVLMKTESES-DLILENCLISMYAKCGVIDNAYNIFSN 392
            I  + MK +      +L +C I  + + G +  A NIF +
Sbjct: 667 FIQKMPMKPDPAVWGALLNSCRIHHHVELGEL-AAENIFQD 706



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 57/222 (25%), Positives = 100/222 (45%), Gaps = 15/222 (6%)

Query: 351 GRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSH 410
           G +++  +  + S   L L N L+SM+ + G + +A+ +F  M  R+L SWN +V G++ 
Sbjct: 125 GSRVYSYVSISMSHLSLQLGNALLSMFVRFGNLVDAWYVFGRMEKRNLFSWNVLVGGYAK 184

Query: 411 HGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPE 470
            GL +E L ++  ML  G  P+  TF  +L  C     + RG E+      V+ I+ G E
Sbjct: 185 AGLFDEALDLYHRMLWVGVKPDVYTFPCVLRTCGGMPNLVRGREI-----HVHVIRYGFE 239

Query: 471 HYVSMINLL----GRAGKIKEAEEFVLRLPFEPDHRIWGALLGAC---GFCEGNAEIAEH 523
             V ++N L     + G +  A     ++P   D   W A++      G C     +   
Sbjct: 240 SDVDVVNALITMYVKCGDVNTARLVFDKMP-NRDRISWNAMISGYFENGVCLEGLRLFGM 298

Query: 524 AAKRLLELDPLNAPAHVVLCNIYAAS--GRHVEEHKLRMDMG 563
             K  ++ D +   + +  C +      GR +  + LR + G
Sbjct: 299 MIKYPVDPDLMTMTSVITACELLGDDRLGRQIHGYVLRTEFG 340


>gi|302762388|ref|XP_002964616.1| hypothetical protein SELMODRAFT_82072 [Selaginella moellendorffii]
 gi|300168345|gb|EFJ34949.1| hypothetical protein SELMODRAFT_82072 [Selaginella moellendorffii]
          Length = 795

 Score =  283 bits (723), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 182/629 (28%), Positives = 316/629 (50%), Gaps = 51/629 (8%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMP-ERNVVSW 76
           +  Y K G +  A+A F  + ++N  S+ +ML+ + QNG    A  L++ M  + N V +
Sbjct: 65  VRAYGKCGSVASARAAFDAIARKNDYSWGSMLTAYAQNGHYRAALDLYKRMDLQPNPVVY 124

Query: 77  TAMICGLA-----DAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMP 131
           T ++   A     + G+   +R    +  + +V+  NS++    + G L +A+++F  M 
Sbjct: 125 TTVLGACASIKALEEGKAIHSRISGTKGLKLDVILENSLLTMYAKCGSLEDAKRLFERMS 184

Query: 132 IKNVISWNAMIAGYVECCMMGEAIVLFEEME-ERNVVTWTSMISG--------------- 175
            ++V SWNAMIA Y +     EAI L+E+M+ E +V T+TS++S                
Sbjct: 185 GRSVSSWNAMIAAYAQSGHFEEAIRLYEDMDVEPSVRTFTSVLSACSNLGLLDQGRKIHA 244

Query: 176 --------------------YCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKE 215
                               Y R   +++   +F+R+PR++VVSW+AMI  FA      E
Sbjct: 245 LISSRGTELDLSLQNALLTMYARCKCLDDAAKIFQRLPRRDVVSWSAMIAAFAETDLFDE 304

Query: 216 SLLLF--IEMKGICDNGNN--CNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTS 271
           ++  +  ++++G+  N       + +C S+  G +R GR    Q L +   +   ++ T+
Sbjct: 305 AIEFYSKMQLEGVRPNYYTFASVLLACASV--GDLRAGRAVHDQILGNGYKI-TLVNGTA 361

Query: 272 MIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMR-AHGVPP 330
           ++D Y S G +  A  LF  + +RD   WT +I G  +         L+ EM+    VP 
Sbjct: 362 LVDLYTSYGSLDEARSLFDQIENRDEGLWTVLIGGYSKQGHRTGVLELYREMKNTTKVPA 421

Query: 331 LNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIF 390
               +S +  A  +       RQ H  +      SD +L   L++MY++ G +++A  +F
Sbjct: 422 TKIIYSCVISACASLGAFADARQAHSDIEADGMISDFVLATSLVNMYSRWGNLESARQVF 481

Query: 391 SNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVS 450
             M SRD ++W +++ G++ HG     L +++ M   G  P+ +TF+ +L ACSHAGL  
Sbjct: 482 DKMSSRDTLAWTTLIAGYAKHGEHGLALGLYKEMELEGAEPSELTFMVVLYACSHAGLQE 541

Query: 451 RGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGA 510
           +G +LF ++   Y + P   HY  +I+LL RAG++ +AEE +  +P EP+   W +LLGA
Sbjct: 542 QGKQLFISIQSDYAMHPNIAHYSCIIDLLSRAGRLSDAEELINAMPVEPNDVTWSSLLGA 601

Query: 511 CGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKV 570
                 + + A HAA ++ +LDP++  ++V+L N++A +G       +R  M  +GV+K 
Sbjct: 602 SRI-HKDVKRATHAAGQITKLDPVDPASYVLLSNVHAVTGNLAGMASVRNTMVARGVKKR 660

Query: 571 PGCSWLMRNGGIQMFLSGDKIPAQVAEIL 599
            G SW+     I  F  GD    +  EI 
Sbjct: 661 RGSSWIEVADQIHEFNVGDNSHPRFQEIF 689



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 111/445 (24%), Positives = 211/445 (47%), Gaps = 52/445 (11%)

Query: 11  VVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMP- 69
           V+   S +T Y+K G +++AK LF+ M  R+V S+NAM++ + Q+G   EA RL+E+M  
Sbjct: 157 VILENSLLTMYAKCGSLEDAKRLFERMSGRSVSSWNAMIAAYAQSGHFEEAIRLYEDMDV 216

Query: 70  ERNVVSWTAMICGLADAGRVCEARKLFEEMPER----NVVSWNSMVVGLIRNGELNEARK 125
           E +V ++T+++   ++ G + + RK+   +  R    ++   N+++    R   L++A K
Sbjct: 217 EPSVRTFTSVLSACSNLGLLDQGRKIHALISSRGTELDLSLQNALLTMYARCKCLDDAAK 276

Query: 126 VFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNV------------------- 166
           +F  +P ++V+SW+AMIA + E  +  EAI  + +M+   V                   
Sbjct: 277 IFQRLPRRDVVSWSAMIAAFAETDLFDEAIEFYSKMQLEGVRPNYYTFASVLLACASVGD 336

Query: 167 --------------------VTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGG 206
                               V  T+++  Y   G ++E   LF ++  ++   WT +IGG
Sbjct: 337 LRAGRAVHDQILGNGYKITLVNGTALVDLYTSYGSLDEARSLFDQIENRDEGLWTVLIGG 396

Query: 207 FAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVP---- 262
           ++  G     L L+ EMK          + SC  +I+     G   +A+     +     
Sbjct: 397 YSKQGHRTGVLELYREMKNTTKVPATKIIYSC--VISACASLGAFADARQAHSDIEADGM 454

Query: 263 VRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFME 322
           + D +  TS+++ Y   G + +A  +F  M  RD +AWT +I+G  ++     A  L+ E
Sbjct: 455 ISDFVLATSLVNMYSRWGNLESARQVFDKMSSRDTLAWTTLIAGYAKHGEHGLALGLYKE 514

Query: 323 MRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTES-ESDLILENCLISMYAKCG 381
           M   G  P   TF V+  A       + G+Q+   +    +   ++   +C+I + ++ G
Sbjct: 515 MELEGAEPSELTFMVVLYACSHAGLQEQGKQLFISIQSDYAMHPNIAHYSCIIDLLSRAG 574

Query: 382 VIDNAYNIFSNM-VSRDLVSWNSMV 405
            + +A  + + M V  + V+W+S++
Sbjct: 575 RLSDAEELINAMPVEPNDVTWSSLL 599



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 99/351 (28%), Positives = 166/351 (47%), Gaps = 18/351 (5%)

Query: 165 NVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMK 224
           NV     ++  Y + G V      F  + RKN  SW +M+  +A NG ++ +L L+  M 
Sbjct: 57  NVFLGNEIVRAYGKCGSVASARAAFDAIARKNDYSWGSMLTAYAQNGHYRAALDLYKRM- 115

Query: 225 GICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVR-----DEISWTSMIDGYLSV 279
              D   N  V +  +++        LEE + +   +        D I   S++  Y   
Sbjct: 116 ---DLQPNPVVYT--TVLGACASIKALEEGKAIHSRISGTKGLKLDVILENSLLTMYAKC 170

Query: 280 GQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLF 339
           G + +A  LF  M  R   +W AMI+   Q+  F EA  L+ +M    V P   TF+ + 
Sbjct: 171 GSLEDAKRLFERMSGRSVSSWNAMIAAYAQSGHFEEAIRLYEDM---DVEPSVRTFTSVL 227

Query: 340 GAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLV 399
            A      +D GR+IH ++    +E DL L+N L++MYA+C  +D+A  IF  +  RD+V
Sbjct: 228 SACSNLGLLDQGRKIHALISSRGTELDLSLQNALLTMYARCKCLDDAAKIFQRLPRRDVV 287

Query: 400 SWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAM 459
           SW++M+  F+   L +E ++ +  M   G  PN  TF  +L AC+  G +  G  + + +
Sbjct: 288 SWSAMIAAFAETDLFDEAIEFYSKMQLEGVRPNYYTFASVLLACASVGDLRAGRAVHDQI 347

Query: 460 F-DVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLG 509
             + YKI     +  ++++L    G + EA     ++    D  +W  L+G
Sbjct: 348 LGNGYKIT--LVNGTALVDLYTSYGSLDEARSLFDQIE-NRDEGLWTVLIG 395



 Score =  144 bits (363), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 102/468 (21%), Positives = 208/468 (44%), Gaps = 35/468 (7%)

Query: 72  NVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMP 131
           NV     ++      G V  AR  F+ +  +N  SW SM+    +NG    A  ++  M 
Sbjct: 57  NVFLGNEIVRAYGKCGSVASARAAFDAIARKNDYSWGSMLTAYAQNGHYRAALDLYKRMD 116

Query: 132 IK-NVISWNAMIAGYVECCMMGEAIVLFEEME-----ERNVVTWTSMISGYCRAGEVEEG 185
           ++ N + +  ++        + E   +   +      + +V+   S+++ Y + G +E+ 
Sbjct: 117 LQPNPVVYTTVLGACASIKALEEGKAIHSRISGTKGLKLDVILENSLLTMYAKCGSLEDA 176

Query: 186 YCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGY 245
             LF RM  ++V SW AMI  +A +G  +E++ L+ +M          +V++  S+++  
Sbjct: 177 KRLFERMSGRSVSSWNAMIAAYAQSGHFEEAIRLYEDMD------VEPSVRTFTSVLSAC 230

Query: 246 IRFGRLEEAQNLFDTVPVR----DEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWT 301
              G L++ + +   +  R    D     +++  Y     + +A  +F  +P RD V+W+
Sbjct: 231 SNLGLLDQGRKIHALISSRGTELDLSLQNALLTMYARCKCLDDAAKIFQRLPRRDVVSWS 290

Query: 302 AMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKT 361
           AMI+   + +LF EA   + +M+  GV P   TF+ +  A  +  ++  GR +H  ++  
Sbjct: 291 AMIAAFAETDLFDEAIEFYSKMQLEGVRPNYYTFASVLLACASVGDLRAGRAVHDQILGN 350

Query: 362 ESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVF 421
             +  L+    L+ +Y   G +D A ++F  + +RD   W  ++ G+S  G     L+++
Sbjct: 351 GYKITLVNGTALVDLYTSYGSLDEARSLFDQIENRDEGLWTVLIGGYSKQGHRTGVLELY 410

Query: 422 ESMLESGTHP-NSVTFLGILSACSHAGLVSRGWELF-----NAMFDVYKIQPGPEHYVSM 475
             M  +   P   + +  ++SAC+  G  +   +       + M   + +        S+
Sbjct: 411 REMKNTTKVPATKIIYSCVISACASLGAFADARQAHSDIEADGMISDFVLA------TSL 464

Query: 476 INLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEH 523
           +N+  R G ++ A +   ++    D   W  L+       G A+  EH
Sbjct: 465 VNMYSRWGNLESARQVFDKMS-SRDTLAWTTLIA------GYAKHGEH 505



 Score =  105 bits (263), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 74/300 (24%), Positives = 134/300 (44%), Gaps = 40/300 (13%)

Query: 232 NCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHN 291
           + NV   N ++  Y + G +  A+  FD +  +++ SW SM+  Y   G    A  L+  
Sbjct: 55  SANVFLGNEIVRAYGKCGSVASARAAFDAIARKNDYSWGSMLTAYAQNGHYRAALDLYKR 114

Query: 292 MPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLG 351
           M                                   + P    ++ + GA  +   ++ G
Sbjct: 115 MD----------------------------------LQPNPVVYTTVLGACASIKALEEG 140

Query: 352 RQIHCVLMKTES-ESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSH 410
           + IH  +  T+  + D+ILEN L++MYAKCG +++A  +F  M  R + SWN+M+  ++ 
Sbjct: 141 KAIHSRISGTKGLKLDVILENSLLTMYAKCGSLEDAKRLFERMSGRSVSSWNAMIAAYAQ 200

Query: 411 HGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPE 470
            G   E ++++E M      P+  TF  +LSACS+ GL+ +G ++ +A+      +    
Sbjct: 201 SGHFEEAIRLYEDM---DVEPSVRTFTSVLSACSNLGLLDQGRKI-HALISSRGTELDLS 256

Query: 471 HYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLE 530
              +++ +  R   + +A +   RLP   D   W A++ A    +   E  E  +K  LE
Sbjct: 257 LQNALLTMYARCKCLDDAAKIFQRLP-RRDVVSWSAMIAAFAETDLFDEAIEFYSKMQLE 315



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 66/284 (23%), Positives = 131/284 (46%), Gaps = 49/284 (17%)

Query: 5   NHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRL 64
           N  K  +V+ T+ +  Y+  G +DEA++LF  +  R+   +  ++ G+ + G  +    L
Sbjct: 350 NGYKITLVNGTALVDLYTSYGSLDEARSLFDQIENRDEGLWTVLIGGYSKQGHRTGVLEL 409

Query: 65  FEEM------PERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLI--- 115
           + EM      P   ++ ++ +I   A  G   +AR+   ++    ++S   +   L+   
Sbjct: 410 YREMKNTTKVPATKII-YSCVISACASLGAFADARQAHSDIEADGMISDFVLATSLVNMY 468

Query: 116 -RNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEME----ERNVVTWT 170
            R G L  AR+VF+ M  ++ ++W  +IAGY +    G A+ L++EME    E + +T+ 
Sbjct: 469 SRWGNLESARQVFDKMSSRDTLAWTTLIAGYAKHGEHGLALGLYKEMELEGAEPSELTFM 528

Query: 171 SMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNG 230
            ++     AG  E+G                                 LFI ++   D  
Sbjct: 529 VVLYACSHAGLQEQGK-------------------------------QLFISIQS--DYA 555

Query: 231 NNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVR-DEISWTSMI 273
            + N+   + +I+   R GRL +A+ L + +PV  ++++W+S++
Sbjct: 556 MHPNIAHYSCIIDLLSRAGRLSDAEELINAMPVEPNDVTWSSLL 599



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 31/144 (21%), Positives = 67/144 (46%), Gaps = 4/144 (2%)

Query: 352 RQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHH 411
           RQIH  +    S +++ L N ++  Y KCG + +A   F  +  ++  SW SM+  ++ +
Sbjct: 44  RQIHDRISGAAS-ANVFLGNEIVRAYGKCGSVASARAAFDAIARKNDYSWGSMLTAYAQN 102

Query: 412 GLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEH 471
           G     L +++ M      PN V +  +L AC+    +  G  + + +     ++     
Sbjct: 103 GHYRAALDLYKRM---DLQPNPVVYTTVLGACASIKALEEGKAIHSRISGTKGLKLDVIL 159

Query: 472 YVSMINLLGRAGKIKEAEEFVLRL 495
             S++ +  + G +++A+    R+
Sbjct: 160 ENSLLTMYAKCGSLEDAKRLFERM 183


>gi|147798405|emb|CAN70142.1| hypothetical protein VITISV_032085 [Vitis vinifera]
          Length = 748

 Score =  283 bits (723), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 188/559 (33%), Positives = 282/559 (50%), Gaps = 81/559 (14%)

Query: 56  GRLSEARRLFEEMPERNVVSWTAMI---------------------CGL----------- 83
           G LS A  LFE + + N   W  MI                     CG+           
Sbjct: 80  GNLSYALLLFESIEQPNQFIWNTMIRGNSLSSSPVGAIDFYVRMLLCGVEPNSYTFPFLL 139

Query: 84  ---ADAGRVCEARKLFEEM----PERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVI 136
              A  G   E +++   +     E +     S++    +NGEL  A  VF+   +++ +
Sbjct: 140 KSCAKVGATQEGKQIHGHVLKLGLESDPFVHTSLINMYAQNGELGYAELVFSKSSLRDAV 199

Query: 137 SWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKN 196
           S+ A+I GY     + +A  LFEE+  R+ V+W +MI+GY ++G  EE    F+ M R N
Sbjct: 200 SFTALITGYTLRGCLDDARRLFEEIPVRDAVSWNAMIAGYAQSGRFEEALAFFQEMKRAN 259

Query: 197 VV----SWTAMIGGFAWNGFHKESLLLFIEMKG-ICDNGNNCNVQSCNSMINGYIRFGRL 251
           V     +   ++   A +G    SL L   ++  I D+G   N++  N++I+ Y + G L
Sbjct: 260 VAPNESTMVTVLSACAQSG----SLELGNWVRSWIEDHGLGSNLRLVNALIDMYSKCGDL 315

Query: 252 EEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNE 311
           ++A++LF+ +  +D ISW  MI GY  +    N+Y                         
Sbjct: 316 DKARDLFEGICEKDIISWNVMIGGYSHM----NSYK------------------------ 347

Query: 312 LFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKT-ESESDLILE 370
              EA  LF +M+   V P + TF  +  A      +DLG+ IH  + K     ++  L 
Sbjct: 348 ---EALALFRKMQQSNVEPNDVTFVSILPACAYLGALDLGKWIHAYIDKKFLGLTNTSLW 404

Query: 371 NCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTH 430
             LI MYAKCG I+ A  +F+ M  + L SWN+M+ G + HG AN  L++F  M + G  
Sbjct: 405 TSLIDMYAKCGNIEAAKQVFAGMKPKSLGSWNAMISGLAMHGHANMALELFRQMRDEGFE 464

Query: 431 PNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEE 490
           P+ +TF+G+LSACSHAGLV  G + F++M + Y I P  +HY  MI+LLGRAG   EAE 
Sbjct: 465 PDDITFVGVLSACSHAGLVELGRQCFSSMVEDYDISPKLQHYGCMIDLLGRAGLFDEAEA 524

Query: 491 FVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASG 550
            +  +  +PD  IWG+LLGAC    GN E+ E AAK L EL+P N  A+V+L NIYA +G
Sbjct: 525 LMKNMEMKPDGAIWGSLLGACR-VHGNVELGEFAAKHLFELEPENPGAYVLLSNIYATAG 583

Query: 551 RHVEEHKLRMDMGLKGVRK 569
           R  +  ++R  +  KG++K
Sbjct: 584 RWDDVARIRTKLNDKGMKK 602



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 110/409 (26%), Positives = 191/409 (46%), Gaps = 20/409 (4%)

Query: 22  SKRGFIDEAKAL----FQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWT 77
           +K G   E K +     +L  + +   + ++++ + QNG L  A  +F +   R+ VS+T
Sbjct: 143 AKVGATQEGKQIHGHVLKLGLESDPFVHTSLINMYAQNGELGYAELVFSKSSLRDAVSFT 202

Query: 78  AMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVIS 137
           A+I G    G + +AR+LFEE+P R+ VSWN+M+ G  ++G   EA   F  M   NV  
Sbjct: 203 ALITGYTLRGCLDDARRLFEEIPVRDAVSWNAMIAGYAQSGRFEEALAFFQEMKRANVAP 262

Query: 138 WNAMIAGYVECCMMGEAIVLFEEMEE--------RNVVTWTSMISGYCRAGEVEEGYCLF 189
             + +   +  C    ++ L   +           N+    ++I  Y + G++++   LF
Sbjct: 263 NESTMVTVLSACAQSGSLELGNWVRSWIEDHGLGSNLRLVNALIDMYSKCGDLDKARDLF 322

Query: 190 RRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCN----VQSCNSMINGY 245
             +  K+++SW  MIGG++    +KE+L LF +M+      N+      + +C  +  G 
Sbjct: 323 EGICEKDIISWNVMIGGYSHMNSYKEALALFRKMQQSNVEPNDVTFVSILPACAYL--GA 380

Query: 246 IRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMIS 305
           +  G+   A      + + +   WTS+ID Y   G +  A  +F  M  +   +W AMIS
Sbjct: 381 LDLGKWIHAYIDKKFLGLTNTSLWTSLIDMYAKCGNIEAAKQVFAGMKPKSLGSWNAMIS 440

Query: 306 GLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKT-ESE 364
           GL  +     A  LF +MR  G  P + TF  +  A      ++LGRQ    +++  +  
Sbjct: 441 GLAMHGHANMALELFRQMRDEGFEPDDITFVGVLSACSHAGLVELGRQCFSSMVEDYDIS 500

Query: 365 SDLILENCLISMYAKCGVIDNAYNIFSNM-VSRDLVSWNSMVMGFSHHG 412
             L    C+I +  + G+ D A  +  NM +  D   W S++     HG
Sbjct: 501 PKLQHYGCMIDLLGRAGLFDEAEALMKNMEMKPDGAIWGSLLGACRVHG 549



 Score =  122 bits (305), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 115/412 (27%), Positives = 193/412 (46%), Gaps = 45/412 (10%)

Query: 12  VHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPER 71
           V  T+ IT Y+ RG +D+A+ LF+ +P R+ VS+NAM++G+ Q+GR  EA   F+EM   
Sbjct: 199 VSFTALITGYTLRGCLDDARRLFEEIPVRDAVSWNAMIAGYAQSGRFEEALAFFQEMKRA 258

Query: 72  NVV----SWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLI----RNGELNEA 123
           NV     +   ++   A +G +     +   + +  + S   +V  LI    + G+L++A
Sbjct: 259 NVAPNESTMVTVLSACAQSGSLELGNWVRSWIEDHGLGSNLRLVNALIDMYSKCGDLDKA 318

Query: 124 RKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNV----VTWTSMISGYCRA 179
           R +F  +  K++ISWN MI GY       EA+ LF +M++ NV    VT+ S++      
Sbjct: 319 RDLFEGICEKDIISWNVMIGGYSHMNSYKEALALFRKMQQSNVEPNDVTFVSILPACAYL 378

Query: 180 GEVEEGYCLFRRMPRK-----NVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCN 234
           G ++ G  +   + +K     N   WT++I  +A  G  + +  +F  MK         +
Sbjct: 379 GALDLGKWIHAYIDKKFLGLTNTSLWTSLIDMYAKCGNIEAAKQVFAGMK-------PKS 431

Query: 235 VQSCNSMINGYIRFGRLEEAQNLF----DTVPVRDEISWTSMIDGYLSVGQVSNAYYLFH 290
           + S N+MI+G    G    A  LF    D     D+I++  ++      G V      F 
Sbjct: 432 LGSWNAMISGLAMHGHANMALELFRQMRDEGFEPDDITFVGVLSACSHAGLVELGRQCFS 491

Query: 291 NMPDRDAVA-----WTAMISGLVQNELFVEATYLF--MEMRAHGVPPLNATFSVLFGAAG 343
           +M +   ++     +  MI  L +  LF EA  L   MEM+  G     A +  L GA  
Sbjct: 492 SMVEDYDISPKLQHYGCMIDLLGRAGLFDEAEALMKNMEMKPDG-----AIWGSLLGACR 546

Query: 344 ATANIDLGR--QIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNM 393
              N++LG     H   ++ E+    +L   L ++YA  G  D+   I + +
Sbjct: 547 VHGNVELGEFAAKHLFELEPENPGAYVL---LSNIYATAGRWDDVARIRTKL 595


>gi|225449798|ref|XP_002272111.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 849

 Score =  283 bits (723), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 188/640 (29%), Positives = 305/640 (47%), Gaps = 65/640 (10%)

Query: 15  TSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMP----- 69
           T  ++ + K G + EA  +FQ +  +    Y+ ML G+ +N  L +A   F  M      
Sbjct: 113 TKLVSLFCKFGSLHEAARVFQPIEDKIDELYHTMLKGYARNSSLDDAVSFFCRMRYDGVR 172

Query: 70  ----------------------------------ERNVVSWTAMICGLADAGRVCEARKL 95
                                               NV + T ++   A    V EA K+
Sbjct: 173 PVVYNFTYLLKVCGDNADLRKGKEIHCQLIVNGFASNVFAMTGVVNMYAKCRLVEEAYKM 232

Query: 96  FEEMPERNVVSWNSMVVGLIRNG----------ELNEARKVFNSMPIKNVISWNAMIAGY 145
           F+ MPER++V WN+++ G  +NG           + E  K  +S+ I +++   A +   
Sbjct: 233 FDRMPERDLVCWNTIISGYAQNGFGKTALELVLRMQEEGKRPDSITIVSILPAVADVGS- 291

Query: 146 VECCMMGEAIVLFEEME--ERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAM 203
                +G +I  +      E  V   T+++  Y + G V     +F RM  K VVSW +M
Sbjct: 292 ---LRIGRSIHGYSMRAGFESFVNVSTALVDMYSKCGSVGTARLIFDRMTGKTVVSWNSM 348

Query: 204 IGGFAWNGFHKESLLLFIEMKGICDNGNNCNV----QSCNSMINGYIRFGRLEEAQNLFD 259
           I G+  NG    ++ +F +M        N  V     +C  +  G +  GR      L D
Sbjct: 349 IDGYVQNGDPGAAMEIFQKMMDEQVEMTNVTVMGALHACADL--GDVEQGRF--VHKLLD 404

Query: 260 TVPVRDEIS-WTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATY 318
            + +  ++S   S+I  Y    +V  A  +F N+  +  V+W AMI G  QN    EA  
Sbjct: 405 QLELGSDVSVMNSLISMYSKCKRVDIAAEIFENLQHKTLVSWNAMILGYAQNGRINEAID 464

Query: 319 LFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYA 378
            F +M+   + P + T   +  A    + +   + IH ++++T  + ++ +   L+ MYA
Sbjct: 465 YFCKMQLQNIKPDSFTMVSVIPALAELSVLPQAKWIHGLVIRTCLDKNVFVATALVDMYA 524

Query: 379 KCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLG 438
           KCG +  A  +F  M  R + +WN+M+ G+  HGL    L++FE M +    PN VTFL 
Sbjct: 525 KCGAVHTARKLFDMMDERHVTTWNAMIDGYGTHGLGKAALELFEKMKKEVIKPNEVTFLC 584

Query: 439 ILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFE 498
           +LSACSH+GLV  G++ F +M   Y ++P  +HY +M++LLGRA ++ EA +F+ ++P E
Sbjct: 585 VLSACSHSGLVEEGFQYFGSMKKDYGLEPAMDHYGAMVDLLGRANRLNEAWDFIQKMPIE 644

Query: 499 PDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKL 558
           P   ++GA+LGAC     N E+ E AA R+ +LDP +   HV+L NIYA +    +  ++
Sbjct: 645 PAISVFGAMLGACRI-HKNVELGEKAANRIFDLDPDDGGYHVLLANIYATASMWDKVARV 703

Query: 559 RMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
           R  M  KG++K PG S +     +  F SG     Q  +I
Sbjct: 704 RTTMEKKGIQKTPGWSVVELQNEVHTFYSGTTSHPQAKKI 743



 Score =  122 bits (305), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 104/398 (26%), Positives = 172/398 (43%), Gaps = 58/398 (14%)

Query: 9   SLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNG----RLSEARRL 64
           S V  +T  +  Y+K   ++EA  +F  MP+R++V +N ++SG+ QNG     L    R+
Sbjct: 208 SNVFAMTGVVNMYAKCRLVEEAYKMFDRMPERDLVCWNTIISGYAQNGFGKTALELVLRM 267

Query: 65  FEEMPERNVVSWTAMICGLADA-----------------------------------GRV 89
            EE    + ++  +++  +AD                                    G V
Sbjct: 268 QEEGKRPDSITIVSILPAVADVGSLRIGRSIHGYSMRAGFESFVNVSTALVDMYSKCGSV 327

Query: 90  CEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECC 149
             AR +F+ M  + VVSWNSM+ G ++NG+   A ++F  M  + V   N  + G +  C
Sbjct: 328 GTARLIFDRMTGKTVVSWNSMIDGYVQNGDPGAAMEIFQKMMDEQVEMTNVTVMGALHAC 387

Query: 150 M-MGE------AIVLFEEME-ERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWT 201
             +G+         L +++E   +V    S+IS Y +   V+    +F  +  K +VSW 
Sbjct: 388 ADLGDVEQGRFVHKLLDQLELGSDVSVMNSLISMYSKCKRVDIAAEIFENLQHKTLVSWN 447

Query: 202 AMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCN--SMINGYIRFGRLEEAQ---- 255
           AMI G+A NG   E++  F +M+       N    S    S+I        L +A+    
Sbjct: 448 AMILGYAQNGRINEAIDYFCKMQ-----LQNIKPDSFTMVSVIPALAELSVLPQAKWIHG 502

Query: 256 NLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVE 315
            +  T   ++    T+++D Y   G V  A  LF  M +R    W AMI G   + L   
Sbjct: 503 LVIRTCLDKNVFVATALVDMYAKCGAVHTARKLFDMMDERHVTTWNAMIDGYGTHGLGKA 562

Query: 316 ATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQ 353
           A  LF +M+   + P   TF  +  A   +  ++ G Q
Sbjct: 563 ALELFEKMKKEVIKPNEVTFLCVLSACSHSGLVEEGFQ 600


>gi|12957718|gb|AAK09236.1|AC084320_23 hypothetical protein [Oryza sativa Japonica Group]
 gi|108711388|gb|ABF99183.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
          Length = 843

 Score =  283 bits (723), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 192/625 (30%), Positives = 320/625 (51%), Gaps = 57/625 (9%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMP----ERNV 73
           I  Y+  G + +A+ +F  M +R+ V +N M+ G+++ G +S A  LF +M     E N 
Sbjct: 188 IKMYANGGLLWDARQVFDGMAERDCVLWNVMMDGYVKAGSVSSAVELFGDMRASGCEPNF 247

Query: 74  VSWTAMICGLADAGRVCEARKL----FEEMPERNVVSWNSMVVGLIRNGELNEARKVFNS 129
            +    +   A    +    +L     +   E  V   N++V    +   L++  K+F  
Sbjct: 248 ATLACFLSVSATESDLFFGVQLHTLAVKYGLESEVAVANTLVSMYAKCKCLDDGWKLFGL 307

Query: 130 MPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNV----VTWTSMI------SGYCRA 179
           MP  ++++WN MI+G V+   + +A++LF +M++  +    VT  S++      +G+ + 
Sbjct: 308 MPRDDLVTWNGMISGCVQNGFVDQALLLFCDMQKSGIRPDSVTLVSLLPALTDLNGFNQG 367

Query: 180 GEVEEGY----------------------CLFRRMPRK--------NVVSWTAMIGGFAW 209
            E+  GY                      C   RM +         +VV  + MI G+  
Sbjct: 368 KELH-GYIVRNCVHMDVFLVSALVDIYFKCRAVRMAQSVYDSSKAIDVVIGSTMISGYVL 426

Query: 210 NGFHKESLLLFIEM--KGICDNGNNCN--VQSCNSMINGYIRFGRLEEAQNLFDTVPVRD 265
           NG  +E++ +F  +  +GI  N       + +C SM    ++ G+   +  L +    R 
Sbjct: 427 NGMSQEAVKMFRYLLEQGIRPNAVAIASVLPACASM--AAMKLGQELHSYALKNAYEGRC 484

Query: 266 EISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRA 325
            +  ++++D Y   G++  ++Y+F  +  +D V W +MIS   QN    EA  LF EM  
Sbjct: 485 YVE-SALMDMYAKCGRLDLSHYIFSKISAKDEVTWNSMISSFAQNGEPEEALNLFREMCM 543

Query: 326 HGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDN 385
            GV   N T S +  A  +   I  G++IH V++K    +DL  E+ LI MY KCG ++ 
Sbjct: 544 EGVKYSNVTISSVLSACASLPAIYYGKEIHGVVIKGPIRADLFAESALIDMYGKCGNLEW 603

Query: 386 AYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSH 445
           A+ +F +M  ++ VSWNS++  +  +GL  E++ +   M E G   + VTFL ++SAC+H
Sbjct: 604 AHRVFESMPEKNEVSWNSIIASYGAYGLVKESVSLLRHMQEEGFKADHVTFLALVSACAH 663

Query: 446 AGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWG 505
           AG V  G  LF  M + Y+I P  EH+  M++L  RAGK+ +A E ++ +PF+PD  IWG
Sbjct: 664 AGQVQEGLRLFRCMTEEYQIAPRMEHFACMVDLYSRAGKLDKAMELIVDMPFKPDAGIWG 723

Query: 506 ALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLK 565
           ALL AC     N E+AE A++ L +LDP N+  +V++ NI A +GR     K+R  M   
Sbjct: 724 ALLHACRV-HRNVELAEIASQELFKLDPHNSGYYVLMSNINAVAGRWDGVSKVRRLMKDT 782

Query: 566 GVRKVPGCSWLMRNGGIQMFLSGDK 590
            V+K+PG SW+  N    +F++ DK
Sbjct: 783 KVQKIPGYSWVDVNNTSHLFVAADK 807



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 88/298 (29%), Positives = 147/298 (49%), Gaps = 18/298 (6%)

Query: 170 TSMISGYCRAGEVEEGYCLFRRMPRKNV---VSWTAMIGGFAWNGFHKESLLLFIEM--- 223
           T ++  Y  A    +   +F  +PR      + W  +I G    G ++ +LL +++M   
Sbjct: 79  TRLVGMYVLARRFRDAVAVFSSLPRGAAACALPWNWLIRGLTMAGDYRSALLFYLKMWAH 138

Query: 224 --KGICDNGN-NCNVQSCNSMINGYIRFGRL--EEAQNL-FDTVPVRDEISWTSMIDGYL 277
               + D+      V+SC ++  G I  GRL    A+ L  D     D    +++I  Y 
Sbjct: 139 PSAPLPDSHTFPYVVKSCAAL--GAIALGRLVHRTARTLGLDG----DMFVGSALIKMYA 192

Query: 278 SVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSV 337
           + G + +A  +F  M +RD V W  M+ G V+      A  LF +MRA G  P  AT + 
Sbjct: 193 NGGLLWDARQVFDGMAERDCVLWNVMMDGYVKAGSVSSAVELFGDMRASGCEPNFATLAC 252

Query: 338 LFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRD 397
               +   +++  G Q+H + +K   ES++ + N L+SMYAKC  +D+ + +F  M   D
Sbjct: 253 FLSVSATESDLFFGVQLHTLAVKYGLESEVAVANTLVSMYAKCKCLDDGWKLFGLMPRDD 312

Query: 398 LVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWEL 455
           LV+WN M+ G   +G  ++ L +F  M +SG  P+SVT + +L A +     ++G EL
Sbjct: 313 LVTWNGMISGCVQNGFVDQALLLFCDMQKSGIRPDSVTLVSLLPALTDLNGFNQGKEL 370



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 102/471 (21%), Positives = 200/471 (42%), Gaps = 53/471 (11%)

Query: 57  RLSEARRLFEEMPERNV---VSWTAMICGLADAGRVCEARKLFEEM--------PERNVV 105
           R  +A  +F  +P       + W  +I GL  AG    A   + +M        P+ +  
Sbjct: 90  RFRDAVAVFSSLPRGAAACALPWNWLIRGLTMAGDYRSALLFYLKMWAHPSAPLPDSHTF 149

Query: 106 SW---NSMVVGLIRNGELNEARKVFNSMPIK-NVISWNAMIAGYVECCMMGEAIVLFEEM 161
            +   +   +G I  G L    +   ++ +  ++   +A+I  Y    ++ +A  +F+ M
Sbjct: 150 PYVVKSCAALGAIALGRL--VHRTARTLGLDGDMFVGSALIKMYANGGLLWDARQVFDGM 207

Query: 162 EERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFI 221
            ER+ V W  M+ GY +AG V     LF  M         A +  F      +  L   +
Sbjct: 208 AERDCVLWNVMMDGYVKAGSVSSAVELFGDMRASGCEPNFATLACFLSVSATESDLFFGV 267

Query: 222 EMKGIC-DNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVG 280
           ++  +    G    V   N++++ Y +   L++   LF                      
Sbjct: 268 QLHTLAVKYGLESEVAVANTLVSMYAKCKCLDDGWKLFGL-------------------- 307

Query: 281 QVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFG 340
                      MP  D V W  MISG VQN    +A  LF +M+  G+ P + T   L  
Sbjct: 308 -----------MPRDDLVTWNGMISGCVQNGFVDQALLLFCDMQKSGIRPDSVTLVSLLP 356

Query: 341 AAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVS 400
           A       + G+++H  +++     D+ L + L+ +Y KC  +  A +++ +  + D+V 
Sbjct: 357 ALTDLNGFNQGKELHGYIVRNCVHMDVFLVSALVDIYFKCRAVRMAQSVYDSSKAIDVVI 416

Query: 401 WNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFN-AM 459
            ++M+ G+  +G++ E +K+F  +LE G  PN+V    +L AC+    +  G EL + A+
Sbjct: 417 GSTMISGYVLNGMSQEAVKMFRYLLEQGIRPNAVAIASVLPACASMAAMKLGQELHSYAL 476

Query: 460 FDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGA 510
            + Y+ +   E   +++++  + G++ +   ++       D   W +++ +
Sbjct: 477 KNAYEGRCYVES--ALMDMYAKCGRL-DLSHYIFSKISAKDEVTWNSMISS 524



 Score = 89.0 bits (219), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 81/347 (23%), Positives = 150/347 (43%), Gaps = 57/347 (16%)

Query: 12  VHLTSSITK-YSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPE 70
           V L S++   Y K   +  A++++      +VV  + M+SG++ NG   EA ++F  + E
Sbjct: 383 VFLVSALVDIYFKCRAVRMAQSVYDSSKAIDVVIGSTMISGYVLNGMSQEAVKMFRYLLE 442

Query: 71  RNV--------------VSWTAMICG-------------------------LADAGRVCE 91
           + +               S  AM  G                          A  GR+  
Sbjct: 443 QGIRPNAVAIASVLPACASMAAMKLGQELHSYALKNAYEGRCYVESALMDMYAKCGRLDL 502

Query: 92  ARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMM 151
           +  +F ++  ++ V+WNSM+    +NGE  EA  +F  M ++ V   N  I+  +  C  
Sbjct: 503 SHYIFSKISAKDEVTWNSMISSFAQNGEPEEALNLFREMCMEGVKYSNVTISSVLSACAS 562

Query: 152 GEAIVLFEEME--------ERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAM 203
             AI   +E+           ++   +++I  Y + G +E  + +F  MP KN VSW ++
Sbjct: 563 LPAIYYGKEIHGVVIKGPIRADLFAESALIDMYGKCGNLEWAHRVFESMPEKNEVSWNSI 622

Query: 204 IGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPV 263
           I  +   G  KES+ L   M+   + G   +  +  ++++     G+++E   LF  +  
Sbjct: 623 IASYGAYGLVKESVSLLRHMQ---EEGFKADHVTFLALVSACAHAGQVQEGLRLFRCMTE 679

Query: 264 RDEIS-----WTSMIDGYLSVGQVSNAYYLFHNMPDR-DAVAWTAMI 304
             +I+     +  M+D Y   G++  A  L  +MP + DA  W A++
Sbjct: 680 EYQIAPRMEHFACMVDLYSRAGKLDKAMELIVDMPFKPDAGIWGALL 726


>gi|125573515|gb|EAZ15030.1| hypothetical protein OsJ_04972 [Oryza sativa Japonica Group]
          Length = 813

 Score =  283 bits (723), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 195/642 (30%), Positives = 306/642 (47%), Gaps = 74/642 (11%)

Query: 25  GFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEA------RRLFEE--MPERNVVSW 76
           G +  A  LF  +P  +V +YN ++  +  +   + A      RR+      P      +
Sbjct: 71  GHLSRAHHLFDQIPSPDVRTYNDLIRAYSSSSPTAAADGLHLYRRMLRHRVAPNNYTFPF 130

Query: 77  TAMIC-GLAD--AGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIK 133
               C  LAD   GR      +   +     VS  +++   ++   L +A  +F +MP +
Sbjct: 131 ALKACSALADHHCGRAIHRHAIHAGLQADLFVS-TALLDMYVKCACLPDAAHIFATMPAR 189

Query: 134 NVISWNAMIAGYVECCMMGEAIVLFEEMEER------NVVTWTSMISGYCRAGEVEEG-- 185
           ++++WNAM+AGY    M   A+     M+ +      N  T  +++    + G + +G  
Sbjct: 190 DLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQGTS 249

Query: 186 ---YCL----------------------------------------FRRMPRKNVVSWTA 202
              YC+                                        F  MP +N V+W+A
Sbjct: 250 VHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEVTWSA 309

Query: 203 MIGGFAWNGFHKESLLLFIEM--KGIC---DNGNNCNVQSCNSMINGYIRFGRLEEAQNL 257
           +IGGF       ++ LLF  M  +G+C          +++C S+   ++R G  E+   L
Sbjct: 310 LIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIASALRACASL--DHLRMG--EQLHAL 365

Query: 258 FDTVPVR-DEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEA 316
                V  D  +  S++  Y   G +  A  LF  M  +D V+++A++SG VQN    EA
Sbjct: 366 LAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGYVQNGRAEEA 425

Query: 317 TYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISM 376
             +F +M+A  V P  AT   L  A    A +  GR  H  ++     S+  + N LI M
Sbjct: 426 FLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIRGLASETSICNALIDM 485

Query: 377 YAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTF 436
           YAKCG ID +  +F+ M SRD+VSWN+M+ G+  HGL  E   +F  M   G  P+ VTF
Sbjct: 486 YAKCGRIDLSRQVFNMMPSRDIVSWNTMIAGYGIHGLGKEATALFLEMNNLGFPPDGVTF 545

Query: 437 LGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLP 496
           + +LSACSH+GLV  G   F+ M   Y + P  EHY+ M++LL R G + EA EF+  +P
Sbjct: 546 ICLLSACSHSGLVIEGKHWFHVMGHGYGLTPRMEHYICMVDLLSRGGFLDEAYEFIQSMP 605

Query: 497 FEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEH 556
              D R+W ALLGAC   + N ++ +  ++ + EL P      V+L NIY+A+GR  E  
Sbjct: 606 LRADVRVWVALLGACRVYK-NIDLGKKVSRMIQELGPEGTGNFVLLSNIYSAAGRFDEAA 664

Query: 557 KLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
           ++R+   ++G +K PGCSW+  NG +  F+ GD+   Q  EI
Sbjct: 665 EVRIIQKVQGFKKSPGCSWIEINGSLHAFVGGDQSHPQSPEI 706



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 65/254 (25%), Positives = 116/254 (45%), Gaps = 16/254 (6%)

Query: 276 YLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEAT--YLFMEMRAHGVPPLNA 333
           +++ G +S A++LF  +P  D   +  +I     +     A   +L+  M  H V P N 
Sbjct: 67  HIASGHLSRAHHLFDQIPSPDVRTYNDLIRAYSSSSPTAAADGLHLYRRMLRHRVAPNNY 126

Query: 334 TFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNM 393
           TF     A  A A+   GR IH   +    ++DL +   L+ MY KC  + +A +IF+ M
Sbjct: 127 TFPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFATM 186

Query: 394 VSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTH---PNSVTFLGILSACSHAGLVS 450
            +RDLV+WN+M+ G++HHG+ +  +    SM +   H   PN+ T + +L   +  G ++
Sbjct: 187 PARDLVAWNAMLAGYAHHGMYHHAVAHLLSM-QMQMHRLRPNASTLVALLPLLAQQGALA 245

Query: 451 RGWELFNAMFDV---------YKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDH 501
           +G  +                 K+  G     +++++  + G +  A      +P   + 
Sbjct: 246 QGTSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPAR-NE 304

Query: 502 RIWGALLGACGFCE 515
             W AL+G    C 
Sbjct: 305 VTWSALIGGFVLCS 318



 Score = 98.6 bits (244), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 83/348 (23%), Positives = 158/348 (45%), Gaps = 65/348 (18%)

Query: 15  TSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVV 74
           T+ +  Y+K G +  A+ +F  MP RN V+++A++ GF+   R+++A  LF+ M  + + 
Sbjct: 277 TALLDMYAKCGSLLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLC 336

Query: 75  SWTAMICGLADAGRVC---EARKLFEEMP--------ERNVVSWNSMVVGLIRNGELNEA 123
             +     +A A R C   +  ++ E++           ++ + NS++    + G +++A
Sbjct: 337 FLSPT--SIASALRACASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQA 394

Query: 124 RKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNV----VTWTSMISG---- 175
             +F+ M +K+ +S++A+++GYV+     EA ++F++M+  NV     T  S+I      
Sbjct: 395 IALFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHL 454

Query: 176 -------------------------------YCRAGEVEEGYCLFRRMPRKNVVSWTAMI 204
                                          Y + G ++    +F  MP +++VSW  MI
Sbjct: 455 AALQHGRCSHGSVIIRGLASETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMI 514

Query: 205 GGFAWNGFHKESLLLFIEMK--GICDNGNN--CNVQSCNS---MINGYIRFGRLEEAQNL 257
            G+  +G  KE+  LF+EM   G   +G    C + +C+    +I G   F  +     L
Sbjct: 515 AGYGIHGLGKEATALFLEMNNLGFPPDGVTFICLLSACSHSGLVIEGKHWFHVMGHGYGL 574

Query: 258 FDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDR-DAVAWTAMI 304
               P  +   +  M+D     G +  AY    +MP R D   W A++
Sbjct: 575 ---TPRMEH--YICMVDLLSRGGFLDEAYEFIQSMPLRADVRVWVALL 617


>gi|125595802|gb|EAZ35582.1| hypothetical protein OsJ_19868 [Oryza sativa Japonica Group]
          Length = 734

 Score =  283 bits (723), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 170/521 (32%), Positives = 261/521 (50%), Gaps = 48/521 (9%)

Query: 122 EARKVFNSMPIKNVISWNAMIAGYVE---CCMMGEAIVLFEEME---------------- 162
           +AR+VF+ MP+++ ++WNA++AGY       M  E +V  +E E                
Sbjct: 112 DARRVFDRMPVRDRVAWNALVAGYARNGLARMAMEMVVRMQEEEGERPDSITLVSVLPAC 171

Query: 163 ---------------------ERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWT 201
                                E  V   T+++  YC+ G++     +F  MP KN VSW 
Sbjct: 172 ANARALAACREAHAFAIRSGLEELVNVATAILDAYCKCGDIRAARVVFDWMPTKNSVSWN 231

Query: 202 AMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEA---QNLF 258
           AMI G+A NG  +E+L LF  M    + G +    S  + +      G L+E      L 
Sbjct: 232 AMIDGYAQNGDSREALALFNRM---VEEGVDVTDVSVLAALQACGELGCLDEGMRVHELL 288

Query: 259 DTVPVRDEIS-WTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEAT 317
             + +   +S   ++I  Y    +V  A ++F  +  R  V+W AMI G  QN    +A 
Sbjct: 289 VRIGLDSNVSVMNALITMYSKCKRVDLASHVFDELDRRTQVSWNAMILGCAQNGCSEDAV 348

Query: 318 YLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMY 377
            LF  M+   V P + T   +  A    ++    R IH   ++   + D+ +   LI MY
Sbjct: 349 RLFTRMQLENVKPDSFTLVSVIPALADISDPLQARWIHGYSIRLHLDQDVYVLTALIDMY 408

Query: 378 AKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFL 437
           AKCG ++ A  +F++   R +++WN+M+ G+  HG     +++FE M   G  PN  TFL
Sbjct: 409 AKCGRVNIARILFNSARERHVITWNAMIHGYGSHGFGKAAVELFEEMKSIGIVPNETTFL 468

Query: 438 GILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPF 497
            +LSACSHAGLV  G E F +M + Y ++PG EHY +M++LLGRAGK+ EA  F+ ++P 
Sbjct: 469 SVLSACSHAGLVDEGREYFTSMKEDYGLEPGMEHYGTMVDLLGRAGKLDEAWAFIQKMPM 528

Query: 498 EPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHK 557
           +P   ++GA+LGAC     N E+AE +A+++ EL P     HV+L NIYA +    +  +
Sbjct: 529 DPGLSVYGAMLGACKL-HKNVELAEESAQKIFELGPQEGVYHVLLANIYANASMWKDVAR 587

Query: 558 LRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
           +R  M   G++K PG S +     I  F SG     Q  EI
Sbjct: 588 VRTAMEKNGLQKTPGWSIIQLKNEIHTFYSGSTNHQQAKEI 628



 Score =  119 bits (297), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 133/560 (23%), Positives = 228/560 (40%), Gaps = 101/560 (18%)

Query: 21  YSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEAR----RLFEEMPER----N 72
           Y+K     +A+ +F  MP R+ V++NA+++G+ +NG    A     R+ EE  ER     
Sbjct: 104 YAKCRRPADARRVFDRMPVRDRVAWNALVAGYARNGLARMAMEMVVRMQEEEGERPDSIT 163

Query: 73  VVS--------------------------------WTAMICGLADAGRVCEARKLFEEMP 100
           +VS                                 TA++      G +  AR +F+ MP
Sbjct: 164 LVSVLPACANARALAACREAHAFAIRSGLEELVNVATAILDAYCKCGDIRAARVVFDWMP 223

Query: 101 ERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEE 160
            +N VSWN+M+ G  +NG+  EA  +FN M  + V   +  +   ++ C  GE   L E 
Sbjct: 224 TKNSVSWNAMIDGYAQNGDSREALALFNRMVEEGVDVTDVSVLAALQAC--GELGCLDEG 281

Query: 161 ME----------ERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWN 210
           M           + NV    ++I+ Y +   V+    +F  + R+  VSW AMI G A N
Sbjct: 282 MRVHELLVRIGLDSNVSVMNALITMYSKCKRVDLASHVFDELDRRTQVSWNAMILGCAQN 341

Query: 211 GFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVR------ 264
           G  ++++ LF  M            Q  N   + +     +    ++ D +  R      
Sbjct: 342 GCSEDAVRLFTRM------------QLENVKPDSFTLVSVIPALADISDPLQARWIHGYS 389

Query: 265 -------DEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEAT 317
                  D    T++ID Y   G+V+ A  LF++  +R  + W AMI G   +     A 
Sbjct: 390 IRLHLDQDVYVLTALIDMYAKCGRVNIARILFNSARERHVITWNAMIHGYGSHGFGKAAV 449

Query: 318 YLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILEN--CLIS 375
            LF EM++ G+ P   TF  +  A      +D GR+ +   MK +   +  +E+   ++ 
Sbjct: 450 ELFEEMKSIGIVPNETTFLSVLSACSHAGLVDEGRE-YFTSMKEDYGLEPGMEHYGTMVD 508

Query: 376 MYAKCGVIDNAYNIFSNM-VSRDLVSWNSMVMGFSHHG---LANETL-KVFESMLESGTH 430
           +  + G +D A+     M +   L  + +M+     H    LA E+  K+FE   + G +
Sbjct: 509 LLGRAGKLDEAWAFIQKMPMDPGLSVYGAMLGACKLHKNVELAEESAQKIFELGPQEGVY 568

Query: 431 PNSVTFLGILSACSHAGLVSR--------------GWELFNAMFDVYKIQPGPEHYVSMI 476
              V    I +  S    V+R              GW +     +++    G  ++    
Sbjct: 569 --HVLLANIYANASMWKDVARVRTAMEKNGLQKTPGWSIIQLKNEIHTFYSGSTNHQQAK 626

Query: 477 NLLGRAGKIKEAEEFVLRLP 496
            +  R  K+ E  + V  +P
Sbjct: 627 EIYSRLAKLIEEIKAVGYVP 646



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 115/455 (25%), Positives = 191/455 (41%), Gaps = 76/455 (16%)

Query: 4   RNHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARR 63
           R+  + LV   T+ +  Y K G I  A+ +F  MP +N VS+NAM+ G+ QNG   EA  
Sbjct: 189 RSGLEELVNVATAILDAYCKCGDIRAARVVFDWMPTKNSVSWNAMIDGYAQNGDSREALA 248

Query: 64  LFEEMPER---------------------------------------NVVSWTAMICGLA 84
           LF  M E                                        NV    A+I   +
Sbjct: 249 LFNRMVEEGVDVTDVSVLAALQACGELGCLDEGMRVHELLVRIGLDSNVSVMNALITMYS 308

Query: 85  DAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAG 144
              RV  A  +F+E+  R  VSWN+M++G  +NG   +A ++F  M ++NV   +  +  
Sbjct: 309 KCKRVDLASHVFDELDRRTQVSWNAMILGCAQNGCSEDAVRLFTRMQLENVKPDSFTLVS 368

Query: 145 YVECC-----------MMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMP 193
            +              + G +I L     +++V   T++I  Y + G V     LF    
Sbjct: 369 VIPALADISDPLQARWIHGYSIRLH---LDQDVYVLTALIDMYAKCGRVNIARILFNSAR 425

Query: 194 RKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEE 253
            ++V++W AMI G+  +GF K ++ LF EMK I   G   N  +  S+++     G ++E
Sbjct: 426 ERHVITWNAMIHGYGSHGFGKAAVELFEEMKSI---GIVPNETTFLSVLSACSHAGLVDE 482

Query: 254 AQNLFDTVPVRDEIS-----WTSMIDGYLSVGQVSNAYYLFHNMP-DRDAVAWTAMISG- 306
            +  F ++     +      + +M+D     G++  A+     MP D     + AM+   
Sbjct: 483 GREYFTSMKEDYGLEPGMEHYGTMVDLLGRAGKLDEAWAFIQKMPMDPGLSVYGAMLGAC 542

Query: 307 -LVQN-ELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANI--DLGRQIHCV----L 358
            L +N EL  E+     E+      P    + VL     A A++  D+ R    +    L
Sbjct: 543 KLHKNVELAEESAQKIFEL-----GPQEGVYHVLLANIYANASMWKDVARVRTAMEKNGL 597

Query: 359 MKTESESDLILENCLISMYAKCGVIDNAYNIFSNM 393
            KT   S + L+N + + Y+       A  I+S +
Sbjct: 598 QKTPGWSIIQLKNEIHTFYSGSTNHQQAKEIYSRL 632



 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 40/122 (32%), Positives = 66/122 (54%), Gaps = 1/122 (0%)

Query: 320 FMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAK 379
           F+ M + G PP+  TF+ L     A  ++  GR +H  L     +S+ +    L +MYAK
Sbjct: 47  FVAMSSAGAPPVLRTFTSLLKLCAARGDLATGRAVHAQLAARGIDSEALAATALANMYAK 106

Query: 380 CGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESML-ESGTHPNSVTFLG 438
           C    +A  +F  M  RD V+WN++V G++ +GLA   +++   M  E G  P+S+T + 
Sbjct: 107 CRRPADARRVFDRMPVRDRVAWNALVAGYARNGLARMAMEMVVRMQEEEGERPDSITLVS 166

Query: 439 IL 440
           +L
Sbjct: 167 VL 168



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 52/173 (30%), Positives = 87/173 (50%), Gaps = 14/173 (8%)

Query: 2   SERNHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEA 61
           S R H    V  LT+ I  Y+K G ++ A+ LF    +R+V+++NAM+ G+  +G    A
Sbjct: 389 SIRLHLDQDVYVLTALIDMYAKCGRVNIARILFNSARERHVITWNAMIHGYGSHGFGKAA 448

Query: 62  RRLFEEMPERNVV----SWTAMICGLADAGRVCEARKLFEEMPER-----NVVSWNSMVV 112
             LFEEM    +V    ++ +++   + AG V E R+ F  M E       +  + +MV 
Sbjct: 449 VELFEEMKSIGIVPNETTFLSVLSACSHAGLVDEGREYFTSMKEDYGLEPGMEHYGTMVD 508

Query: 113 GLIRNGELNEARKVFNSMPIKNVIS-WNAMIAGYVECCMMGEAIVLFEEMEER 164
            L R G+L+EA      MP+   +S + AM+      C + + + L EE  ++
Sbjct: 509 LLGRAGKLDEAWAFIQKMPMDPGLSVYGAMLGA----CKLHKNVELAEESAQK 557


>gi|15226200|ref|NP_180329.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75216862|sp|Q9ZUW3.1|PP172_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g27610
 gi|3860271|gb|AAC73039.1| putative selenium-binding protein [Arabidopsis thaliana]
 gi|330252926|gb|AEC08020.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 868

 Score =  283 bits (723), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 188/627 (29%), Positives = 309/627 (49%), Gaps = 57/627 (9%)

Query: 15  TSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEM----PE 70
           TS +  Y K     + + +F  M +RNVV++  ++SG+ +N    E   LF  M     +
Sbjct: 132 TSLVDTYMKGSNFKDGRKVFDEMKERNVVTWTTLISGYARNSMNDEVLTLFMRMQNEGTQ 191

Query: 71  RNVVSWTAMICGLAD-----------------------------------AGRVCEARKL 95
            N  ++ A +  LA+                                    G V +AR L
Sbjct: 192 PNSFTFAAALGVLAEEGVGGRGLQVHTVVVKNGLDKTIPVSNSLINLYLKCGNVRKARIL 251

Query: 96  FEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAI 155
           F++   ++VV+WNSM+ G   NG   EA  +F SM +  V    +  A  ++ C   + +
Sbjct: 252 FDKTEVKSVVTWNSMISGYAANGLDLEALGMFYSMRLNYVRLSESSFASVIKLCANLKEL 311

Query: 156 VLFEEME----------ERNVVTWTSMISGYCRAGEVEEGYCLFRRMP-RKNVVSWTAMI 204
              E++           ++N+   T+++  Y +   + +   LF+ +    NVVSWTAMI
Sbjct: 312 RFTEQLHCSVVKYGFLFDQNI--RTALMVAYSKCTAMLDALRLFKEIGCVGNVVSWTAMI 369

Query: 205 GGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVR 264
            GF  N   +E++ LF EMK     G   N  + + ++         E    +  T   R
Sbjct: 370 SGFLQNDGKEEAVDLFSEMK---RKGVRPNEFTYSVILTALPVISPSEVHAQVVKTNYER 426

Query: 265 DEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMR 324
                T+++D Y+ +G+V  A  +F  + D+D VAW+AM++G  Q      A  +F E+ 
Sbjct: 427 SSTVGTALLDAYVKLGKVEEAAKVFSGIDDKDIVAWSAMLAGYAQTGETEAAIKMFGELT 486

Query: 325 AHGVPPLNATFSVLFGAAGAT-ANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVI 383
             G+ P   TFS +     AT A++  G+Q H   +K+  +S L + + L++MYAK G I
Sbjct: 487 KGGIKPNEFTFSSILNVCAATNASMGQGKQFHGFAIKSRLDSSLCVSSALLTMYAKKGNI 546

Query: 384 DNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSAC 443
           ++A  +F     +DLVSWNSM+ G++ HG A + L VF+ M +     + VTF+G+ +AC
Sbjct: 547 ESAEEVFKRQREKDLVSWNSMISGYAQHGQAMKALDVFKEMKKRKVKMDGVTFIGVFAAC 606

Query: 444 SHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRI 503
           +HAGLV  G + F+ M    KI P  EH   M++L  RAG++++A + +  +P      I
Sbjct: 607 THAGLVEEGEKYFDIMVRDCKIAPTKEHNSCMVDLYSRAGQLEKAMKVIENMPNPAGSTI 666

Query: 504 WGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMG 563
           W  +L AC       E+   AA++++ + P ++ A+V+L N+YA SG   E  K+R  M 
Sbjct: 667 WRTILAACR-VHKKTELGRLAAEKIIAMKPEDSAAYVLLSNMYAESGDWQERAKVRKLMN 725

Query: 564 LKGVRKVPGCSWLMRNGGIQMFLSGDK 590
            + V+K PG SW+        FL+GD+
Sbjct: 726 ERNVKKEPGYSWIEVKNKTYSFLAGDR 752



 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 153/601 (25%), Positives = 268/601 (44%), Gaps = 75/601 (12%)

Query: 30  AKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPE----------RNVVSWTAM 79
           A  LF   P R+  SY ++L GF ++GR  EA+RLF  +             +V+  +A 
Sbjct: 46  AHNLFDKSPGRDRESYISLLFGFSRDGRTQEAKRLFLNIHRLGMEMDCSIFSSVLKVSAT 105

Query: 80  IC---------------GLADAGRVC--------------EARKLFEEMPERNVVSWNSM 110
           +C               G  D   V               + RK+F+EM ERNVV+W ++
Sbjct: 106 LCDELFGRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRKVFDEMKERNVVTWTTL 165

Query: 111 VVGLIRNGELNEARKVF----NSMPIKNVISWNAMIAGYVECCMMGEAI----VLFEEME 162
           + G  RN   +E   +F    N     N  ++ A +    E  + G  +    V+ +   
Sbjct: 166 ISGYARNSMNDEVLTLFMRMQNEGTQPNSFTFAAALGVLAEEGVGGRGLQVHTVVVKNGL 225

Query: 163 ERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIE 222
           ++ +    S+I+ Y + G V +   LF +   K+VV+W +MI G+A NG   E+L +F  
Sbjct: 226 DKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANGLDLEALGMFYS 285

Query: 223 MKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVP----VRDEISWTSMIDGYLS 278
           M+    N    +  S  S+I        L   + L  +V     + D+   T+++  Y  
Sbjct: 286 MRL---NYVRLSESSFASVIKLCANLKELRFTEQLHCSVVKYGFLFDQNIRTALMVAYSK 342

Query: 279 VGQVSNAYYLFHNMP-DRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSV 337
              + +A  LF  +    + V+WTAMISG +QN+   EA  LF EM+  GV P   T+SV
Sbjct: 343 CTAMLDALRLFKEIGCVGNVVSWTAMISGFLQNDGKEEAVDLFSEMKRKGVRPNEFTYSV 402

Query: 338 LFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRD 397
           +  A    +      ++H  ++KT  E    +   L+  Y K G ++ A  +FS +  +D
Sbjct: 403 ILTALPVIS----PSEVHAQVVKTNYERSSTVGTALLDAYVKLGKVEEAAKVFSGIDDKD 458

Query: 398 LVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFN 457
           +V+W++M+ G++  G     +K+F  + + G  PN  TF  IL+ C+         + F+
Sbjct: 459 IVAWSAMLAGYAQTGETEAAIKMFGELTKGGIKPNEFTFSSILNVCAATNASMGQGKQFH 518

Query: 458 AMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCE-G 516
                 ++        +++ +  + G I+ AEE V +   E D   W +++   G+ + G
Sbjct: 519 GFAIKSRLDSSLCVSSALLTMYAKKGNIESAEE-VFKRQREKDLVSWNSMIS--GYAQHG 575

Query: 517 NA----EIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRH--VEEHKLRMDMGLKGVRKV 570
            A    ++ +   KR +++D       V    ++AA      VEE +   D+ ++  +  
Sbjct: 576 QAMKALDVFKEMKKRKVKMDG------VTFIGVFAACTHAGLVEEGEKYFDIMVRDCKIA 629

Query: 571 P 571
           P
Sbjct: 630 P 630



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 104/447 (23%), Positives = 186/447 (41%), Gaps = 88/447 (19%)

Query: 72  NVVSWTAMIC-GLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVF--- 127
           N V+   + C G   + R+  A  LF++ P R+  S+ S++ G  R+G   EA+++F   
Sbjct: 25  NGVAQVRIYCFGTVSSSRLYNAHNLFDKSPGRDRESYISLLFGFSRDGRTQEAKRLFLNI 84

Query: 128 -------NSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAG 180
                  +     +V+  +A +   +    +    + F  +++  V   TS++  Y +  
Sbjct: 85  HRLGMEMDCSIFSSVLKVSATLCDELFGRQLHCQCIKFGFLDD--VSVGTSLVDTYMKGS 142

Query: 181 EVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKG--------------- 225
             ++G  +F  M  +NVV+WT +I G+A N  + E L LF+ M+                
Sbjct: 143 NFKDGRKVFDEMKERNVVTWTTLISGYARNSMNDEVLTLFMRMQNEGTQPNSFTFAAALG 202

Query: 226 -----------------ICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEIS 268
                            +  NG +  +   NS+IN Y++ G + +A+ LFD   V+  ++
Sbjct: 203 VLAEEGVGGRGLQVHTVVVKNGLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVT 262

Query: 269 WTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGV 328
           W SMI GY +                               N L +EA  +F  MR + V
Sbjct: 263 WNSMISGYAA-------------------------------NGLDLEALGMFYSMRLNYV 291

Query: 329 PPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYN 388
               ++F+ +         +    Q+HC ++K     D  +   L+  Y+KC  + +A  
Sbjct: 292 RLSESSFASVIKLCANLKELRFTEQLHCSVVKYGFLFDQNIRTALMVAYSKCTAMLDALR 351

Query: 389 IFSNM-VSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACS--- 444
           +F  +    ++VSW +M+ GF  +    E + +F  M   G  PN  T+  IL+A     
Sbjct: 352 LFKEIGCVGNVVSWTAMISGFLQNDGKEEAVDLFSEMKRKGVRPNEFTYSVILTALPVIS 411

Query: 445 ----HAGLVSRGWE----LFNAMFDVY 463
               HA +V   +E    +  A+ D Y
Sbjct: 412 PSEVHAQVVKTNYERSSTVGTALLDAY 438



 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 55/218 (25%), Positives = 106/218 (48%), Gaps = 9/218 (4%)

Query: 275 GYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNAT 334
           G +S  ++ NA+ LF   P RD  ++ +++ G  ++    EA  LF+ +   G+    + 
Sbjct: 36  GTVSSSRLYNAHNLFDKSPGRDRESYISLLFGFSRDGRTQEAKRLFLNIHRLGMEMDCSI 95

Query: 335 FSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMV 394
           FS +   +    +   GRQ+HC  +K     D+ +   L+  Y K     +   +F  M 
Sbjct: 96  FSSVLKVSATLCDELFGRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRKVFDEMK 155

Query: 395 SRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWE 454
            R++V+W +++ G++ + + +E L +F  M   GT PNS TF   L   +  G+  RG +
Sbjct: 156 ERNVVTWTTLISGYARNSMNDEVLTLFMRMQNEGTQPNSFTFAAALGVLAEEGVGGRGLQ 215

Query: 455 LFNAMFDVYKIQPGPEHYV----SMINLLGRAGKIKEA 488
           +   +     ++ G +  +    S+INL  + G +++A
Sbjct: 216 VHTVV-----VKNGLDKTIPVSNSLINLYLKCGNVRKA 248


>gi|302824792|ref|XP_002994036.1| hypothetical protein SELMODRAFT_138059 [Selaginella moellendorffii]
 gi|300138139|gb|EFJ04918.1| hypothetical protein SELMODRAFT_138059 [Selaginella moellendorffii]
          Length = 524

 Score =  283 bits (723), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 158/493 (32%), Positives = 268/493 (54%), Gaps = 20/493 (4%)

Query: 87  GRVCEARKLFEEM--PERNVVSWNSMVVGLIRNGELNEARKVFNSMP------IKNVISW 138
           G + +AR +F+ +   +R++   N+M+    +NG+   A  VF SMP        ++ + 
Sbjct: 6   GSLSDARLVFDSIASKDRSIDLCNAMITTCSQNGDAAGAHTVFQSMPKSRKMRTDDLTAS 65

Query: 139 NAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVV 198
           N+MIA Y +   + +A  LF+ ME R+ VTWT++++ Y + G   +   LF  MPR+ ++
Sbjct: 66  NSMIAAYGKAKSVADAKRLFDRMERRDEVTWTAVVAVYAQNGHSRDAKLLFDAMPRRGII 125

Query: 199 SWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLF 258
             TAM+G  A  G   +   LF EM+G        +V S   +I+   R GR+++A+ +F
Sbjct: 126 VATAMLGVCARGGQAHQVWDLFTEMEGR-------DVFSWGVLISVLSRHGRMQDARFVF 178

Query: 259 DTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATY 318
           D +P+R  +SWT+ I  Y   G +  A  LF  MP  D + WT++++   Q  L  EA  
Sbjct: 179 DKMPLRSTVSWTTTITAYAKCGDLDEARRLFDAMPQPDVITWTSLMTAYAQGGLSREAVE 238

Query: 319 LFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYA 378
           LF  M   GV     +FS++  A    +++  GR++H  + +     D+++ N L++MY 
Sbjct: 239 LFKLMDLEGVEADKYSFSIVLDACARLSDVAEGRRVHRTIAEL-GPMDVVVTNSLLNMYG 297

Query: 379 KCGVIDNAYNIFSNMVS--RDLVSWNSMVMGFSHHGLANETLKVFESM-LESGTHPNSVT 435
           KCG +  A   F  + +  R + +WN+++  ++ +G        F ++ L+    PN++T
Sbjct: 298 KCGNMAEAVAAFEGVAATQRVVATWNALIAAYTENGWHESAFGAFRALNLDGVVQPNAIT 357

Query: 436 FLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRL 495
           F+GI +ACSH G +    + F  M   + + P  +HYV M +LLGR G++ E+EE +  +
Sbjct: 358 FIGIFTACSHTGKLEDARDYFLCMAPDFGVTPVADHYVCMSDLLGRVGRLVESEELISSM 417

Query: 496 PFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEE 555
           PF PD   W  L+G+C     NA++AE AA+ +   DP     +++L NIYAA GR  + 
Sbjct: 418 PFHPDPVAWLGLMGSCR-THLNADVAERAAEHVYVSDPGCPSPYILLSNIYAALGRTKDL 476

Query: 556 HKLRMDMGLKGVR 568
            ++R  M ++GV+
Sbjct: 477 LRIRRLMKMRGVK 489



 Score =  152 bits (385), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 122/489 (24%), Positives = 228/489 (46%), Gaps = 64/489 (13%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQR------NVVSYNAMLSGFLQNGRLSEARRLFEEMPER 71
           IT  S+ G    A  +FQ MP+       ++ + N+M++ + +   +++A+RLF+ M  R
Sbjct: 32  ITTCSQNGDAAGAHTVFQSMPKSRKMRTDDLTASNSMIAAYGKAKSVADAKRLFDRMERR 91

Query: 72  NVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMP 131
           + V+WTA++   A  G   +A+ LF+ MP R ++   +M+    R G+ ++   +F  M 
Sbjct: 92  DEVTWTAVVAVYAQNGHSRDAKLLFDAMPRRGIIVATAMLGVCARGGQAHQVWDLFTEME 151

Query: 132 IKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRR 191
            ++V SW  +I+       M +A  +F++M  R+ V+WT+ I+ Y + G+++E   LF  
Sbjct: 152 GRDVFSWGVLISVLSRHGRMQDARFVFDKMPLRSTVSWTTTITAYAKCGDLDEARRLFDA 211

Query: 192 MPRKNVVSWTAMIGGFAWNGFHKESLLLF--IEMKGICDNGNNCNVQSCNSMINGYIRFG 249
           MP+ +V++WT+++  +A  G  +E++ LF  ++++G+       +  S + +++   R  
Sbjct: 212 MPQPDVITWTSLMTAYAQGGLSREAVELFKLMDLEGV-----EADKYSFSIVLDACARLS 266

Query: 250 RLEEAQNLFDTV----PVRDEISWTSMIDGYLSVGQVSNAYYLFHNMP--DRDAVAWTAM 303
            + E + +  T+    P+ D +   S+++ Y   G ++ A   F  +    R    W A+
Sbjct: 267 DVAEGRRVHRTIAELGPM-DVVVTNSLLNMYGKCGNMAEAVAAFEGVAATQRVVATWNAL 325

Query: 304 ISGLVQNELFVEATYLFMEMRAHGVPPLNA-TFSVLFGAAGATANIDLGRQIHCVLMKTE 362
           I+   +N     A   F  +   GV   NA TF  +F A   T              K E
Sbjct: 326 IAAYTENGWHESAFGAFRALNLDGVVQPNAITFIGIFTACSHTG-------------KLE 372

Query: 363 SESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFE 422
              D  L  C+   +    V D+ Y   S+++ R               G   E+ ++  
Sbjct: 373 DARDYFL--CMAPDFGVTPVADH-YVCMSDLLGR--------------VGRLVESEELIS 415

Query: 423 SMLESGTHPNSVTFLGILSACS---HAGLVSRGWELFNAMFDVYKIQPG-PEHYVSMINL 478
           SM     HP+ V +LG++ +C    +A +  R  E       VY   PG P  Y+ + N+
Sbjct: 416 SM---PFHPDPVAWLGLMGSCRTHLNADVAERAAE------HVYVSDPGCPSPYILLSNI 466

Query: 479 LGRAGKIKE 487
               G+ K+
Sbjct: 467 YAALGRTKD 475



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 97/387 (25%), Positives = 171/387 (44%), Gaps = 54/387 (13%)

Query: 12  VHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPER 71
           V  T+ +  Y++ G   +AK LF  MP+R ++   AML    + G+  +   LF EM  R
Sbjct: 94  VTWTAVVAVYAQNGHSRDAKLLFDAMPRRGIIVATAMLGVCARGGQAHQVWDLFTEMEGR 153

Query: 72  NVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMP 131
           +V SW  +I  L+  GR+ +AR +F++MP R+ VSW + +    + G+L+EAR++F++MP
Sbjct: 154 DVFSWGVLISVLSRHGRMQDARFVFDKMPLRSTVSWTTTITAYAKCGDLDEARRLFDAMP 213

Query: 132 IKNVISWNAMIAGYVECCMMGEAIVLFE-------------------------------- 159
             +VI+W +++  Y +  +  EA+ LF+                                
Sbjct: 214 QPDVITWTSLMTAYAQGGLSREAVELFKLMDLEGVEADKYSFSIVLDACARLSDVAEGRR 273

Query: 160 ------EMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMP--RKNVVSWTAMIGGFAWNG 211
                 E+   +VV   S+++ Y + G + E    F  +   ++ V +W A+I  +  NG
Sbjct: 274 VHRTIAELGPMDVVVTNSLLNMYGKCGNMAEAVAAFEGVAATQRVVATWNALIAAYTENG 333

Query: 212 FHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNL-------FDTVPVR 264
           +H+ +   F  +    D     N  +   +       G+LE+A++        F   PV 
Sbjct: 334 WHESAFGAFRALN--LDGVVQPNAITFIGIFTACSHTGKLEDARDYFLCMAPDFGVTPVA 391

Query: 265 DEISWTSMIDGYLSVGQVSNAYYLFHNMP-DRDAVAWTAMISGLVQ--NELFVEATYLFM 321
           D   +  M D    VG++  +  L  +MP   D VAW  ++       N    E     +
Sbjct: 392 DH--YVCMSDLLGRVGRLVESEELISSMPFHPDPVAWLGLMGSCRTHLNADVAERAAEHV 449

Query: 322 EMRAHGVPPLNATFSVLFGAAGATANI 348
            +   G P      S ++ A G T ++
Sbjct: 450 YVSDPGCPSPYILLSNIYAALGRTKDL 476


>gi|125525521|gb|EAY73635.1| hypothetical protein OsI_01524 [Oryza sativa Indica Group]
          Length = 560

 Score =  283 bits (723), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 176/536 (32%), Positives = 272/536 (50%), Gaps = 28/536 (5%)

Query: 77  TAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSM----PI 132
           T  I  L   G VC AR LF+EMPER+VV+W +M+ G   NG   EA  VF  M      
Sbjct: 7   TTFISSLCSRGAVCHARALFDEMPERDVVAWTAMLSGYASNGLRREALDVFRRMVAAGAA 66

Query: 133 KNVISWNAMIAGYVECCMMGEAIVLFEEMEERNV----VTWTSMISGYCRAGEVEEGYCL 188
            N  + ++++      C    A+ L      R V        ++I  Y     + EG   
Sbjct: 67  PNEYTLSSVLTACRGPCAPAMAMPLHAVAVRRGVDRMPYVVNALIDSY---ASLAEGVVD 123

Query: 189 FRRM-----PRKNVVSWTAMIGGFAWNGFHKESLLLFIEM--KGICDNGNNCNV--QSCN 239
            RR+       +   SWT+MI G+A  G  +  L LF  M   G+  +   C++   +C 
Sbjct: 124 ARRLFDALGSGRTAASWTSMIAGYARWGQERTGLRLFKTMLKDGVELSTFACSIALHACT 183

Query: 240 SMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVA 299
            +I+  +  G+    Q +   + V   +   S+ID Y +  ++ +A  LF   P+R+ + 
Sbjct: 184 LVID--LCLGQQLHLQCIKKALDVNLAVV-NSLIDMYCTCARILDARSLFDGTPERNLIT 240

Query: 300 WTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLM 359
           W  MI+G  Q +  + A  L +EM      P   T + +  A    A +  G+Q+H  ++
Sbjct: 241 WNTMIAGYSQCDPLM-ALQLLLEMNDE---PNCFTLTSITSACADLAALRCGKQVHGAVL 296

Query: 360 KTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLK 419
           +     DL + N L+ MY+KCG I NA N+F  M  +D  SW SM+ G+  +G  NE ++
Sbjct: 297 RRSYSDDLQMGNALVDMYSKCGSITNAKNVFDRMGCKDKFSWTSMIAGYGMNGYGNEAVQ 356

Query: 420 VFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLL 479
           +F SM+ +G HP+ V FL ++S+CSHAGLV  GW  F +M + Y +QP  E Y S++NLL
Sbjct: 357 LFSSMIHAGVHPDHVVFLSLISSCSHAGLVDEGWNFFRSMINEYNLQPNKEVYGSVVNLL 416

Query: 480 GRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAH 539
            RAG+++EA + +  +PF PD  +WGALLGA      N E+   AA+++ E++P +   +
Sbjct: 417 ARAGRLREALDLIDTMPFAPDEYVWGALLGASKM-HNNVEMGRLAARKITEINPDDVKNY 475

Query: 540 VVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQV 595
           ++L +IYAA  +  E    R  +   G RK  G SW+     +  F + D    QV
Sbjct: 476 IMLASIYAAGSKWGEYAFTRRSLRGIGSRKEAGISWIEVMDKMYSFTAADSSSPQV 531



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 99/399 (24%), Positives = 159/399 (39%), Gaps = 95/399 (23%)

Query: 13  HLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEM---- 68
           H T+ I+    RG +  A+ALF  MP+R+VV++ AMLSG+  NG   EA  +F  M    
Sbjct: 5   HATTFISSLCSRGAVCHARALFDEMPERDVVAWTAMLSGYASNGLRREALDVFRRMVAAG 64

Query: 69  --PERNVVSWTAMIC-----------------------------GLAD-----AGRVCEA 92
             P    +S     C                              L D     A  V +A
Sbjct: 65  AAPNEYTLSSVLTACRGPCAPAMAMPLHAVAVRRGVDRMPYVVNALIDSYASLAEGVVDA 124

Query: 93  RKLFEEMPE-RNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMM 151
           R+LF+ +   R   SW SM+ G  R G+     ++F +M    V       +  +  C +
Sbjct: 125 RRLFDALGSGRTAASWTSMIAGYARWGQERTGLRLFKTMLKDGVELSTFACSIALHACTL 184

Query: 152 GEAIVLFEEME--------ERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAM 203
              + L +++         + N+    S+I  YC    + +   LF   P +N+++W  M
Sbjct: 185 VIDLCLGQQLHLQCIKKALDVNLAVVNSLIDMYCTCARILDARSLFDGTPERNLITWNTM 244

Query: 204 IGGFAWNGFHKESLLLFIEMKGICDNGNNC------------------------------ 233
           I G++       +L L +EM    ++  NC                              
Sbjct: 245 IAGYS-QCDPLMALQLLLEM----NDEPNCFTLTSITSACADLAALRCGKQVHGAVLRRS 299

Query: 234 ---NVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFH 290
              ++Q  N++++ Y + G +  A+N+FD +  +D+ SWTSMI GY   G  + A  LF 
Sbjct: 300 YSDDLQMGNALVDMYSKCGSITNAKNVFDRMGCKDKFSWTSMIAGYGMNGYGNEAVQLFS 359

Query: 291 NM------PDRDAVAWTAMISGLVQNELFVEATYLFMEM 323
           +M      PD   V + ++IS      L  E    F  M
Sbjct: 360 SMIHAGVHPDH--VVFLSLISSCSHAGLVDEGWNFFRSM 396



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 77/278 (27%), Positives = 125/278 (44%), Gaps = 45/278 (16%)

Query: 8   KSLVVHLT---SSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRL 64
           K+L V+L    S I  Y     I +A++LF   P+RN++++N M++G+ Q   L   + L
Sbjct: 201 KALDVNLAVVNSLIDMYCTCARILDARSLFDGTPERNLITWNTMIAGYSQCDPLMALQLL 260

Query: 65  FEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPER----NVVSWNSMVVGLIRNGEL 120
            E   E N  + T++    AD   +   +++   +  R    ++   N++V    + G +
Sbjct: 261 LEMNDEPNCFTLTSITSACADLAALRCGKQVHGAVLRRSYSDDLQMGNALVDMYSKCGSI 320

Query: 121 NEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNV----VTWTSMISGY 176
             A+ VF+ M  K+  SW +MIAGY       EA+ LF  M    V    V + S+IS  
Sbjct: 321 TNAKNVFDRMGCKDKFSWTSMIAGYGMNGYGNEAVQLFSSMIHAGVHPDHVVFLSLISSC 380

Query: 177 CRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQ 236
             AG V+EG+  FR M                 N ++ +                  N +
Sbjct: 381 SHAGLVDEGWNFFRSMI----------------NEYNLQP-----------------NKE 407

Query: 237 SCNSMINGYIRFGRLEEAQNLFDTVP-VRDEISWTSMI 273
              S++N   R GRL EA +L DT+P   DE  W +++
Sbjct: 408 VYGSVVNLLARAGRLREALDLIDTMPFAPDEYVWGALL 445


>gi|302769356|ref|XP_002968097.1| hypothetical protein SELMODRAFT_89588 [Selaginella moellendorffii]
 gi|300163741|gb|EFJ30351.1| hypothetical protein SELMODRAFT_89588 [Selaginella moellendorffii]
          Length = 586

 Score =  283 bits (723), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 171/566 (30%), Positives = 289/566 (51%), Gaps = 54/566 (9%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWT 77
           +T Y++ G    AK++F   PQR++VS+N M   F  + ++ E  +  ++MP+ NVVSW 
Sbjct: 30  VTAYAQNGHFQNAKSMFDSSPQRDMVSWNTMCQSFSWSHKVDEVSQCLQKMPQHNVVSWN 89

Query: 78  AMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVIS 137
           +++C  A  G   +A+ LF  MPE++V+SWN +V+      +L+ A+ +F+  P  +V++
Sbjct: 90  SLLCTFAQNGHYPKAQALFVAMPEKDVISWN-IVISQYAEIDLDRAKLLFDRAPQHSVVT 148

Query: 138 WNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNV 197
           WN +IA + E     E+  +F+ M  R++V+W S++       +V++   +F +MP  + 
Sbjct: 149 WNVLIAHHCE-----ESKRVFDAMPCRDIVSWNSLL-------DVDQDQEIFSKMPSHDA 196

Query: 198 VSWTAMIGGFAWNGFHKESLLLF------------IEMKGICDNGN------------NC 233
           +SW  +I   A  G    ++ LF            + + G   +G+              
Sbjct: 197 ISWITVIAANAREGHLDCAMDLFDRSPSRSLALWNVILSGFASSGDVNRARSILSSMPRT 256

Query: 234 NVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSN--AYYLFHN 291
           +V S NS++ G + F  L +A  LF  +P R+  SWT ++ GY    +     A  L  +
Sbjct: 257 DVISWNSLLAGLLEFSSLRDAGELFAAMPHRNLSSWTLLVGGYAQHCETPRQAAAILLES 316

Query: 292 MPDR---DAVAWTAMISGLVQNELFVEATYLFMEMRA--HGVPPLNATFSVLFGAAGATA 346
           MP     D V W AMI+G  ++   +EA  L+ E+      + P  +TF+ +  A  +  
Sbjct: 317 MPQDERVDLVTWNAMIAGFARSGHSIEALELYRELEKLDRELQPDASTFAAVIDACASAV 376

Query: 347 --NIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSM 404
              +  GR IH   +    + D ++ + L++MY + G +D A   F  + +R+ V+WNSM
Sbjct: 377 PPAVSEGRAIHRQAIARGMDDDPVVGSSLVAMYTRIGGLDAAQRCFDRITARNTVAWNSM 436

Query: 405 VMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYK 464
           ++GF++HG A   ++ F +M   G   ++VTF+ +LS+CSHAG +    + F +M   + 
Sbjct: 437 LVGFANHGSATGVIQSFHAMQLDGAIADAVTFVAVLSSCSHAGWIVEAGQCFQSMAADFF 496

Query: 465 IQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHA 524
           I   PEHY ++ +LL R G+I EA   +   P+E     W +LL AC     N E    A
Sbjct: 497 IAATPEHYSAIGDLLARLGQIGEARSLIRAKPYESSAADWMSLLSACRI-HCNVEHGASA 555

Query: 525 AKRLLELDPLNAPAHVVLCNIYAASG 550
           A +  E   L+ P       I AASG
Sbjct: 556 AAQAFEFGELDDP-------IAAASG 574



 Score = 45.4 bits (106), Expect = 0.085,   Method: Compositional matrix adjust.
 Identities = 27/94 (28%), Positives = 46/94 (48%), Gaps = 4/94 (4%)

Query: 366 DLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESML 425
           D +  N +++ YA+ G   NA ++F +   RD+VSWN+M   FS     +E  +  + M 
Sbjct: 22  DTVQWNIIVTAYAQNGHFQNAKSMFDSSPQRDMVSWNTMCQSFSWSHKVDEVSQCLQKMP 81

Query: 426 ESGTHPNSVTFLGILSACSHAGLVSRGWELFNAM 459
           +     N V++  +L   +  G   +   LF AM
Sbjct: 82  QH----NVVSWNSLLCTFAQNGHYPKAQALFVAM 111



 Score = 42.4 bits (98), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 47/191 (24%), Positives = 80/191 (41%), Gaps = 31/191 (16%)

Query: 376 MYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVT 435
           M+ KCG +++A  +F  + + D V WN +V  ++ +G      +  +SM +S    + V+
Sbjct: 1   MFGKCGSVEDARKLFDQIDNPDTVQWNIIVTAYAQNG----HFQNAKSMFDSSPQRDMVS 56

Query: 436 FLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYV----SMINLLGRAGKIKEAEEF 491
           +  +  + S +  V    +    M         P+H V    S++    + G   +A+  
Sbjct: 57  WNTMCQSFSWSHKVDEVSQCLQKM---------PQHNVVSWNSLLCTFAQNGHYPKAQAL 107

Query: 492 VLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAH-VVLCNIYAASG 550
            + +P E D   W  ++         AEI    AK L +     AP H VV  N+  A  
Sbjct: 108 FVAMP-EKDVISWNIVISQ------YAEIDLDRAKLLFD----RAPQHSVVTWNVLIA-- 154

Query: 551 RHVEEHKLRMD 561
            H EE K   D
Sbjct: 155 HHCEESKRVFD 165


>gi|222625907|gb|EEE60039.1| hypothetical protein OsJ_12814 [Oryza sativa Japonica Group]
          Length = 852

 Score =  283 bits (723), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 192/625 (30%), Positives = 320/625 (51%), Gaps = 57/625 (9%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMP----ERNV 73
           I  Y+  G + +A+ +F  M +R+ V +N M+ G+++ G +S A  LF +M     E N 
Sbjct: 188 IKMYANGGLLWDARQVFDGMAERDCVLWNVMMDGYVKAGSVSSAVELFGDMRASGCEPNF 247

Query: 74  VSWTAMICGLADAGRVCEARKL----FEEMPERNVVSWNSMVVGLIRNGELNEARKVFNS 129
            +    +   A    +    +L     +   E  V   N++V    +   L++  K+F  
Sbjct: 248 ATLACFLSVSATESDLFFGVQLHTLAVKYGLESEVAVANTLVSMYAKCKCLDDGWKLFGL 307

Query: 130 MPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNV----VTWTSMI------SGYCRA 179
           MP  ++++WN MI+G V+   + +A++LF +M++  +    VT  S++      +G+ + 
Sbjct: 308 MPRDDLVTWNGMISGCVQNGFVDQALLLFCDMQKSGIRPDSVTLVSLLPALTDLNGFNQG 367

Query: 180 GEVEEGY----------------------CLFRRMPRK--------NVVSWTAMIGGFAW 209
            E+  GY                      C   RM +         +VV  + MI G+  
Sbjct: 368 KELH-GYIVRNCVHMDVFLVSALVDIYFKCRAVRMAQSVYDSSKAIDVVIGSTMISGYVL 426

Query: 210 NGFHKESLLLFIEM--KGICDNGNNCN--VQSCNSMINGYIRFGRLEEAQNLFDTVPVRD 265
           NG  +E++ +F  +  +GI  N       + +C SM    ++ G+   +  L +    R 
Sbjct: 427 NGMSQEAVKMFRYLLEQGIRPNAVAIASVLPACASM--AAMKLGQELHSYALKNAYEGRC 484

Query: 266 EISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRA 325
            +  ++++D Y   G++  ++Y+F  +  +D V W +MIS   QN    EA  LF EM  
Sbjct: 485 YVE-SALMDMYAKCGRLDLSHYIFSKISAKDEVTWNSMISSFAQNGEPEEALNLFREMCM 543

Query: 326 HGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDN 385
            GV   N T S +  A  +   I  G++IH V++K    +DL  E+ LI MY KCG ++ 
Sbjct: 544 EGVKYSNVTISSVLSACASLPAIYYGKEIHGVVIKGPIRADLFAESALIDMYGKCGNLEW 603

Query: 386 AYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSH 445
           A+ +F +M  ++ VSWNS++  +  +GL  E++ +   M E G   + VTFL ++SAC+H
Sbjct: 604 AHRVFESMPEKNEVSWNSIIASYGAYGLVKESVSLLRHMQEEGFKADHVTFLALVSACAH 663

Query: 446 AGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWG 505
           AG V  G  LF  M + Y+I P  EH+  M++L  RAGK+ +A E ++ +PF+PD  IWG
Sbjct: 664 AGQVQEGLRLFRCMTEEYQIAPRMEHFACMVDLYSRAGKLDKAMELIVDMPFKPDAGIWG 723

Query: 506 ALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLK 565
           ALL AC     N E+AE A++ L +LDP N+  +V++ NI A +GR     K+R  M   
Sbjct: 724 ALLHACRV-HRNVELAEIASQELFKLDPHNSGYYVLMSNINAVAGRWDGVSKVRRLMKDT 782

Query: 566 GVRKVPGCSWLMRNGGIQMFLSGDK 590
            V+K+PG SW+  N    +F++ DK
Sbjct: 783 KVQKIPGYSWVDVNNTSHLFVAADK 807



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 88/298 (29%), Positives = 147/298 (49%), Gaps = 18/298 (6%)

Query: 170 TSMISGYCRAGEVEEGYCLFRRMPRKNV---VSWTAMIGGFAWNGFHKESLLLFIEM--- 223
           T ++  Y  A    +   +F  +PR      + W  +I G    G ++ +LL +++M   
Sbjct: 79  TRLVGMYVLARRFRDAVAVFSSLPRGAAACALPWNWLIRGLTMAGDYRSALLFYLKMWAH 138

Query: 224 --KGICDNGN-NCNVQSCNSMINGYIRFGRL--EEAQNL-FDTVPVRDEISWTSMIDGYL 277
               + D+      V+SC ++  G I  GRL    A+ L  D     D    +++I  Y 
Sbjct: 139 PSAPLPDSHTFPYVVKSCAAL--GAIALGRLVHRTARTLGLDG----DMFVGSALIKMYA 192

Query: 278 SVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSV 337
           + G + +A  +F  M +RD V W  M+ G V+      A  LF +MRA G  P  AT + 
Sbjct: 193 NGGLLWDARQVFDGMAERDCVLWNVMMDGYVKAGSVSSAVELFGDMRASGCEPNFATLAC 252

Query: 338 LFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRD 397
               +   +++  G Q+H + +K   ES++ + N L+SMYAKC  +D+ + +F  M   D
Sbjct: 253 FLSVSATESDLFFGVQLHTLAVKYGLESEVAVANTLVSMYAKCKCLDDGWKLFGLMPRDD 312

Query: 398 LVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWEL 455
           LV+WN M+ G   +G  ++ L +F  M +SG  P+SVT + +L A +     ++G EL
Sbjct: 313 LVTWNGMISGCVQNGFVDQALLLFCDMQKSGIRPDSVTLVSLLPALTDLNGFNQGKEL 370



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 102/471 (21%), Positives = 200/471 (42%), Gaps = 53/471 (11%)

Query: 57  RLSEARRLFEEMPERNV---VSWTAMICGLADAGRVCEARKLFEEM--------PERNVV 105
           R  +A  +F  +P       + W  +I GL  AG    A   + +M        P+ +  
Sbjct: 90  RFRDAVAVFSSLPRGAAACALPWNWLIRGLTMAGDYRSALLFYLKMWAHPSAPLPDSHTF 149

Query: 106 SW---NSMVVGLIRNGELNEARKVFNSMPIK-NVISWNAMIAGYVECCMMGEAIVLFEEM 161
            +   +   +G I  G L    +   ++ +  ++   +A+I  Y    ++ +A  +F+ M
Sbjct: 150 PYVVKSCAALGAIALGRL--VHRTARTLGLDGDMFVGSALIKMYANGGLLWDARQVFDGM 207

Query: 162 EERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFI 221
            ER+ V W  M+ GY +AG V     LF  M         A +  F      +  L   +
Sbjct: 208 AERDCVLWNVMMDGYVKAGSVSSAVELFGDMRASGCEPNFATLACFLSVSATESDLFFGV 267

Query: 222 EMKGIC-DNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVG 280
           ++  +    G    V   N++++ Y +   L++   LF                      
Sbjct: 268 QLHTLAVKYGLESEVAVANTLVSMYAKCKCLDDGWKLFGL-------------------- 307

Query: 281 QVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFG 340
                      MP  D V W  MISG VQN    +A  LF +M+  G+ P + T   L  
Sbjct: 308 -----------MPRDDLVTWNGMISGCVQNGFVDQALLLFCDMQKSGIRPDSVTLVSLLP 356

Query: 341 AAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVS 400
           A       + G+++H  +++     D+ L + L+ +Y KC  +  A +++ +  + D+V 
Sbjct: 357 ALTDLNGFNQGKELHGYIVRNCVHMDVFLVSALVDIYFKCRAVRMAQSVYDSSKAIDVVI 416

Query: 401 WNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFN-AM 459
            ++M+ G+  +G++ E +K+F  +LE G  PN+V    +L AC+    +  G EL + A+
Sbjct: 417 GSTMISGYVLNGMSQEAVKMFRYLLEQGIRPNAVAIASVLPACASMAAMKLGQELHSYAL 476

Query: 460 FDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGA 510
            + Y+ +   E   +++++  + G++ +   ++       D   W +++ +
Sbjct: 477 KNAYEGRCYVES--ALMDMYAKCGRL-DLSHYIFSKISAKDEVTWNSMISS 524



 Score = 88.6 bits (218), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 81/347 (23%), Positives = 150/347 (43%), Gaps = 57/347 (16%)

Query: 12  VHLTSSITK-YSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPE 70
           V L S++   Y K   +  A++++      +VV  + M+SG++ NG   EA ++F  + E
Sbjct: 383 VFLVSALVDIYFKCRAVRMAQSVYDSSKAIDVVIGSTMISGYVLNGMSQEAVKMFRYLLE 442

Query: 71  RNV--------------VSWTAMICG-------------------------LADAGRVCE 91
           + +               S  AM  G                          A  GR+  
Sbjct: 443 QGIRPNAVAIASVLPACASMAAMKLGQELHSYALKNAYEGRCYVESALMDMYAKCGRLDL 502

Query: 92  ARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMM 151
           +  +F ++  ++ V+WNSM+    +NGE  EA  +F  M ++ V   N  I+  +  C  
Sbjct: 503 SHYIFSKISAKDEVTWNSMISSFAQNGEPEEALNLFREMCMEGVKYSNVTISSVLSACAS 562

Query: 152 GEAIVLFEEME--------ERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAM 203
             AI   +E+           ++   +++I  Y + G +E  + +F  MP KN VSW ++
Sbjct: 563 LPAIYYGKEIHGVVIKGPIRADLFAESALIDMYGKCGNLEWAHRVFESMPEKNEVSWNSI 622

Query: 204 IGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPV 263
           I  +   G  KES+ L   M+   + G   +  +  ++++     G+++E   LF  +  
Sbjct: 623 IASYGAYGLVKESVSLLRHMQ---EEGFKADHVTFLALVSACAHAGQVQEGLRLFRCMTE 679

Query: 264 RDEIS-----WTSMIDGYLSVGQVSNAYYLFHNMPDR-DAVAWTAMI 304
             +I+     +  M+D Y   G++  A  L  +MP + DA  W A++
Sbjct: 680 EYQIAPRMEHFACMVDLYSRAGKLDKAMELIVDMPFKPDAGIWGALL 726


>gi|449439011|ref|XP_004137281.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39350-like [Cucumis sativus]
          Length = 787

 Score =  282 bits (722), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 188/611 (30%), Positives = 307/611 (50%), Gaps = 71/611 (11%)

Query: 12  VHLTSSI-TKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEM-- 68
           +HL S +   Y+  G +  A+ LF  +   ++  +NA++  ++  G   +A R+F+ M  
Sbjct: 117 IHLPSHLAVSYAFCGCVPLARKLFDDLSDPSLFLWNAIIKMYVDKGFHFDALRVFDSMIC 176

Query: 69  -----PERN-------------------VVSWTAMICGLA--------------DAGRVC 90
                P++                    ++   A++ G +              + G+V 
Sbjct: 177 SGKCWPDKYTFPLVIKACSVMSMLNVGVLIHGRALVSGFSSNMFVQNSLLAMYMNCGKVG 236

Query: 91  EARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECC- 149
            AR++F  M +R+VVSWN+M+ G  +NG   EA  VFNSM    V   +A I   +  C 
Sbjct: 237 LARQVFNVMLKRSVVSWNTMISGWFQNGRPEEALAVFNSMMDARVEPDSATIVSALPSCG 296

Query: 150 ------------MMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNV 197
                        + +   L E++E RN     +++  Y R G ++E   +F     K+V
Sbjct: 297 HLKELELGIKVHKLVQKNHLQEKIEVRN-----ALVDMYSRCGGMDEASLVFAETKEKDV 351

Query: 198 VSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNL 257
           ++WT+MI G+  NG  K +L L   M+    +G   N  +  S+++       L++ ++L
Sbjct: 352 ITWTSMINGYIMNGNAKSALALCPAMQL---DGVVPNAVTLASLLSACASLCCLKQGKSL 408

Query: 258 FDTVPVR----DEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELF 313
              V  +    D +  T++ID Y     VS ++ +F     +  V W A++SGL+ NEL 
Sbjct: 409 HAWVMRKKLDSDVLVVTALIDMYAKCNAVSYSFQVFAKTSMKRTVPWNALLSGLIHNELA 468

Query: 314 VEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCL 373
            EA  LF  M    V   +ATF+ +  A    A++     +H  L+++   S + +   L
Sbjct: 469 REAVGLFKSMLIEEVEANHATFNSVIPAYAILADLKQVMNLHSYLVRSGFISKIAVITGL 528

Query: 374 ISMYAKCGVIDNAYNIFSNMVSR--DLVSWNSMVMGFSHHGLANETLKVFESMLESGTHP 431
           I MY+KCG +D A+ IF  + ++  D++ W+ ++ G+  HG     + +F  M+ SG  P
Sbjct: 529 IDMYSKCGSLDYAHKIFDEIPNKEKDIIVWSVLIAGYGMHGHGETAVLLFNQMVHSGMQP 588

Query: 432 NSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEF 491
           N +TF  +L ACSH GLV  G  LF  M + Y   P P HY  +++LLGRAG++ EA + 
Sbjct: 589 NEITFTSVLHACSHRGLVDDGLTLFKYMIENYPSSPLPNHYTCVVDLLGRAGRLDEAYDL 648

Query: 492 VLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGR 551
           +  +PF+ +H IWGALLGAC     N E+ E AA+RL EL+P +   +++L NIYAA GR
Sbjct: 649 IKSMPFQQNHSIWGALLGAC-LIHQNVELGEVAAERLFELEPESTGNYILLANIYAAVGR 707

Query: 552 --HVEEHKLRM 560
               E HKL++
Sbjct: 708 WKDAENHKLQL 718



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 76/361 (21%), Positives = 160/361 (44%), Gaps = 62/361 (17%)

Query: 1   MSERNHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSE 60
           + ++NH +  +    + +  YS+ G +DEA  +F    +++V+++ +M++G++ NG    
Sbjct: 310 LVQKNHLQEKIEVRNALVDMYSRCGGMDEASLVFAETKEKDVITWTSMINGYIMNGNAKS 369

Query: 61  ARRLFEEMPERNVV--------------------------SW-------------TAMIC 81
           A  L   M    VV                          +W             TA+I 
Sbjct: 370 ALALCPAMQLDGVVPNAVTLASLLSACASLCCLKQGKSLHAWVMRKKLDSDVLVVTALID 429

Query: 82  GLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNV----IS 137
             A    V  + ++F +   +  V WN+++ GLI N    EA  +F SM I+ V     +
Sbjct: 430 MYAKCNAVSYSFQVFAKTSMKRTVPWNALLSGLIHNELAREAVGLFKSMLIEEVEANHAT 489

Query: 138 WNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISG----YCRAGEVEEGYCLFRRMP 193
           +N++I  Y     + + + L   +     ++  ++I+G    Y + G ++  + +F  +P
Sbjct: 490 FNSVIPAYAILADLKQVMNLHSYLVRSGFISKIAVITGLIDMYSKCGSLDYAHKIFDEIP 549

Query: 194 --RKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRL 251
              K+++ W+ +I G+  +G  + ++LLF +M     +G   N  +  S+++     G +
Sbjct: 550 NKEKDIIVWSVLIAGYGMHGHGETAVLLFNQM---VHSGMQPNEITFTSVLHACSHRGLV 606

Query: 252 EEAQNLFD-------TVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMP-DRDAVAWTAM 303
           ++   LF        + P+ +   +T ++D     G++  AY L  +MP  ++   W A+
Sbjct: 607 DDGLTLFKYMIENYPSSPLPNH--YTCVVDLLGRAGRLDEAYDLIKSMPFQQNHSIWGAL 664

Query: 304 I 304
           +
Sbjct: 665 L 665


>gi|357128066|ref|XP_003565697.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g56570-like [Brachypodium distachyon]
          Length = 564

 Score =  282 bits (722), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 184/581 (31%), Positives = 287/581 (49%), Gaps = 66/581 (11%)

Query: 37  MPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLF 96
           M Q++  +   ++      G L  AR +F+EMP+R+VV+WTAM+ G A  G    A  LF
Sbjct: 1   MAQKHATT---LIKSLCAGGALRHARAVFDEMPDRDVVAWTAMLSGYASNGCHSYALDLF 57

Query: 97  EEMPERNVVSWN---SMVVGLIRNGELN-----------EARKVFNSMPIKNVISWNAMI 142
             M    V       S V+   R G  +             R+  + MP   V+  NA+I
Sbjct: 58  RRMLAAGVGPNEFTLSSVLTACRGGAADGGCEPSSLHAVAVRRGVDHMPY--VV--NALI 113

Query: 143 AGYVEC---CMMGEAIVLFEEM-EERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNV- 197
             Y  C     + E+  LF+ +   R   +WTSM++GY R G+ + G  LF+ M +  + 
Sbjct: 114 EAYASCEEGVGVEESRKLFDALGSGRTAASWTSMVAGYSRWGQEQTGLQLFQTMIQDGIE 173

Query: 198 -VSWTAMIGGFAWNGFHKESLLLFIEMKGIC-DNGNNCNVQSCNSMINGYIRFGRLEEAQ 255
              +T  I   A       +L +  ++  +C     N N+   NS+I+ Y     L +A+
Sbjct: 174 LSPFTCSIALHACASI--ANLCVGQQLHVLCLRKAFNANLTVANSLIDMYCSCANLLDAR 231

Query: 256 NLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVE 315
            LFD +P R+ ++W +MI                         AW +  + L+  +L   
Sbjct: 232 RLFDEIPERNLVTWNTMI-------------------------AWYSQCNHLMALQL--- 263

Query: 316 ATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLIS 375
                  +R   + P   T + +  A    A++  G+Q+H   ++     DL + N L+ 
Sbjct: 264 -------LREMNLQPNCFTLTSITSACAGLASLRFGQQVHGAALRRNYGKDLQMCNALVD 316

Query: 376 MYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVT 435
           MY+KCG I NA  +F+ M  +D +SW SM+ G+  +G ANE++++F SM+ +G HP+ V 
Sbjct: 317 MYSKCGSIANAKKMFNMMDYKDKLSWTSMITGYGMNGYANESIQLFTSMIHAGVHPDHVV 376

Query: 436 FLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRL 495
           FLG++ AC+H GLV  GW  F +M   Y +QP  E Y  + NLL RAG+++EA + + R+
Sbjct: 377 FLGLICACNHGGLVDEGWNFFRSMTSEYNLQPNKEIYGCVTNLLARAGRLREAFDLIHRM 436

Query: 496 PFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEE 555
           PF PD  +WGALLGAC     N E+   AA++++E++P  A  +V+L NIYAA  +  E 
Sbjct: 437 PFAPDETVWGALLGACKM-HKNVELGRLAARKIIEINPDRAKTYVLLANIYAAGNKWGEY 495

Query: 556 HKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVA 596
              R  +   G RK  G SW+     I  F + D    QV+
Sbjct: 496 ADTRRLLRGIGSRKEAGTSWIDVTDKIYSFTTADSSSPQVS 536



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 98/369 (26%), Positives = 149/369 (40%), Gaps = 97/369 (26%)

Query: 13  HLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEM---- 68
           H T+ I      G +  A+A+F  MP R+VV++ AMLSG+  NG  S A  LF  M    
Sbjct: 5   HATTLIKSLCAGGALRHARAVFDEMPDRDVVAWTAMLSGYASNGCHSYALDLFRRMLAAG 64

Query: 69  --PERNVVSWTAMIC--GLADAG------------------------------------R 88
             P    +S     C  G AD G                                     
Sbjct: 65  VGPNEFTLSSVLTACRGGAADGGCEPSSLHAVAVRRGVDHMPYVVNALIEAYASCEEGVG 124

Query: 89  VCEARKLFEEMPE-RNVVSWNSMVVGLIRNGELNEARKVFNSM--------PIK------ 133
           V E+RKLF+ +   R   SW SMV G  R G+     ++F +M        P        
Sbjct: 125 VEESRKLFDALGSGRTAASWTSMVAGYSRWGQEQTGLQLFQTMIQDGIELSPFTCSIALH 184

Query: 134 -------------------------NVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVT 168
                                    N+   N++I  Y  C  + +A  LF+E+ ERN+VT
Sbjct: 185 ACASIANLCVGQQLHVLCLRKAFNANLTVANSLIDMYCSCANLLDARRLFDEIPERNLVT 244

Query: 169 WTSMISGYCRAGEVEEGYCLFRRMPRK----NVVSWTAMIGGFAWNGFHKESLLLFIEMK 224
           W +MI+ Y +   +     L R M  +     + S T+   G A       SL    ++ 
Sbjct: 245 WNTMIAWYSQCNHL-MALQLLREMNLQPNCFTLTSITSACAGLA-------SLRFGQQVH 296

Query: 225 GICDNGN-NCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVS 283
           G     N   ++Q CN++++ Y + G +  A+ +F+ +  +D++SWTSMI GY   G  +
Sbjct: 297 GAALRRNYGKDLQMCNALVDMYSKCGSIANAKKMFNMMDYKDKLSWTSMITGYGMNGYAN 356

Query: 284 NAYYLFHNM 292
            +  LF +M
Sbjct: 357 ESIQLFTSM 365



 Score = 65.5 bits (158), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 51/185 (27%), Positives = 86/185 (46%), Gaps = 8/185 (4%)

Query: 16  SSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVS 75
           S I  Y     + +A+ LF  +P+RN+V++N M++ + Q   L   + L E   + N  +
Sbjct: 216 SLIDMYCSCANLLDARRLFDEIPERNLVTWNTMIAWYSQCNHLMALQLLREMNLQPNCFT 275

Query: 76  WTAMICGLADAGRVCEARKLFEEMPERN----VVSWNSMVVGLIRNGELNEARKVFNSMP 131
            T++    A    +   +++      RN    +   N++V    + G +  A+K+FN M 
Sbjct: 276 LTSITSACAGLASLRFGQQVHGAALRRNYGKDLQMCNALVDMYSKCGSIANAKKMFNMMD 335

Query: 132 IKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNV----VTWTSMISGYCRAGEVEEGYC 187
            K+ +SW +MI GY       E+I LF  M    V    V +  +I      G V+EG+ 
Sbjct: 336 YKDKLSWTSMITGYGMNGYANESIQLFTSMIHAGVHPDHVVFLGLICACNHGGLVDEGWN 395

Query: 188 LFRRM 192
            FR M
Sbjct: 396 FFRSM 400



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/150 (28%), Positives = 69/150 (46%), Gaps = 11/150 (7%)

Query: 3   ERNHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEAR 62
            RN+ K L +   + +  YSK G I  AK +F +M  ++ +S+ +M++G+  NG  +E+ 
Sbjct: 301 RRNYGKDLQM-CNALVDMYSKCGSIANAKKMFNMMDYKDKLSWTSMITGYGMNGYANESI 359

Query: 63  RLFEEMPERNV----VSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVG----- 113
           +LF  M    V    V +  +IC     G V E    F  M     +  N  + G     
Sbjct: 360 QLFTSMIHAGVHPDHVVFLGLICACNHGGLVDEGWNFFRSMTSEYNLQPNKEIYGCVTNL 419

Query: 114 LIRNGELNEARKVFNSMPIK-NVISWNAMI 142
           L R G L EA  + + MP   +   W A++
Sbjct: 420 LARAGRLREAFDLIHRMPFAPDETVWGALL 449


>gi|302782465|ref|XP_002973006.1| hypothetical protein SELMODRAFT_98207 [Selaginella moellendorffii]
 gi|300159607|gb|EFJ26227.1| hypothetical protein SELMODRAFT_98207 [Selaginella moellendorffii]
          Length = 698

 Score =  282 bits (722), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 180/590 (30%), Positives = 306/590 (51%), Gaps = 26/590 (4%)

Query: 21  YSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMP------ERNVV 74
           Y   G +++A+A+F  MP RN  S+  ++S ++  G+  EA  L+  +       + +  
Sbjct: 2   YRDCGRLEDARAVFDSMPLRNEFSWAIIISAYVGAGKEQEALCLYRTLVRSSTEIQADAF 61

Query: 75  SWTAMICGLADAGRVCEARKLFEEMPERNVVS----WNSMVVGLIRNGELNEARKVFNSM 130
            +++++   A    + +  ++ E + +R V       N++V    + G ++ A++VF+ +
Sbjct: 62  IFSSVLAACARLKCLEQGLEIHERIVKRGVKQDVGLQNALVTMYAKCGRIDRAKQVFDRI 121

Query: 131 PIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFR 190
             ++V+SWNAM++   E   +  A+ +++EM   +V+ W++MIS    AG   E   L+R
Sbjct: 122 THRDVVSWNAMVSANAEAGHLEVALKIYQEMVSADVLCWSTMISAEAMAGHDREALELYR 181

Query: 191 RM---PRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIR 247
            M    R N  +   ++      G      L+     G   +G + +     +++N Y R
Sbjct: 182 EMILSVRPNASTLATVLAACTRLGDLSSGALV---RDGAIQSGLDRDAVVGTTLVNLYAR 238

Query: 248 FGRLEEAQN-LFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISG 306
           FG +  A+  LFD++  R  +SW +M+  +    +V  A  LF  MPD+  ++W AMI+G
Sbjct: 239 FGDVIAAREVLFDSMKDRTVVSWNAMVTAFAQNARVDEAEKLFREMPDKSVISWNAMIAG 298

Query: 307 LVQNELFVEATYLFMEMRAHGVPPLNATF-SVLFGAAGATANIDLGRQIHCVLMKTESES 365
             QN    +A  LF  M   G+ P   T+ SVL   A  TA+  LGR I C  M      
Sbjct: 299 FGQNGRPKQALELFRRMDLEGLQPSRMTYCSVLDACANLTAS-SLGRFI-CDGMDEALAK 356

Query: 366 DLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESML 425
           D+ + N + +MY KCG+ + A   F  M  RD+VSW +++  +S +G ++E L +F  M+
Sbjct: 357 DISVANSICNMYGKCGLPELARQTFLEMTYRDVVSWTAIIAAYSQNGYSSEALDIFRIMV 416

Query: 426 ESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMF--DVYKIQPGPEHYVSMINLLGRAG 483
           ++G  PN +T +  LSACSH  L   G ++F+++   D Y +     H++  I+LLGRAG
Sbjct: 417 QAGVEPNGITLINTLSACSHGALFDEGSDIFSSLVSGDYYGVTANESHFLCAIDLLGRAG 476

Query: 484 KIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELD--PLNAPA-HV 540
            +K+AE  + ++PF+     W +LL AC     + + A   A  L ELD   +  PA +V
Sbjct: 477 YLKDAETLITKMPFKAGAVAWTSLLSACRTFR-DLKRAGRVANHLFELDESSIKDPAPYV 535

Query: 541 VLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDK 590
           +L NIYA++G    E KLR  + +K  +K+PG S +   G    F S D+
Sbjct: 536 MLSNIYASAGDRAAEMKLRDQIRIKCRKKLPGKSTITIKGQTNEFYSLDE 585



 Score =  142 bits (357), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 103/350 (29%), Positives = 168/350 (48%), Gaps = 45/350 (12%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWT 77
           +T Y+K G ID AK +F  +  R+VVS+NAM+S   + G L  A ++++EM   +V+ W+
Sbjct: 102 VTMYAKCGRIDRAKQVFDRITHRDVVSWNAMVSANAEAGHLEVALKIYQEMVSADVLCWS 161

Query: 78  AMICGLADAGRVCEARKLFEEM---PERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKN 134
            MI   A AG   EA +L+ EM      N  +  +++    R G+L+    V +   I++
Sbjct: 162 TMISAEAMAGHDREALELYREMILSVRPNASTLATVLAACTRLGDLSSGALVRDG-AIQS 220

Query: 135 VISWNAMIAGYVE--CCMMGEAI----VLFEEMEERNVVTWTSMISGYCRAGEVEEGYCL 188
            +  +A++   +       G+ I    VLF+ M++R VV+W +M++ + +   V+E   L
Sbjct: 221 GLDRDAVVGTTLVNLYARFGDVIAAREVLFDSMKDRTVVSWNAMVTAFAQNARVDEAEKL 280

Query: 189 FRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEM------------------------- 223
           FR MP K+V+SW AMI GF  NG  K++L LF  M                         
Sbjct: 281 FREMPDKSVISWNAMIAGFGQNGRPKQALELFRRMDLEGLQPSRMTYCSVLDACANLTAS 340

Query: 224 ---KGICDNGNNC---NVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYL 277
              + ICD  +     ++   NS+ N Y + G  E A+  F  +  RD +SWT++I  Y 
Sbjct: 341 SLGRFICDGMDEALAKDISVANSICNMYGKCGLPELARQTFLEMTYRDVVSWTAIIAAYS 400

Query: 278 SVGQVSNAYYLFHNM----PDRDAVAWTAMISGLVQNELFVEATYLFMEM 323
             G  S A  +F  M     + + +     +S      LF E + +F  +
Sbjct: 401 QNGYSSEALDIFRIMVQAGVEPNGITLINTLSACSHGALFDEGSDIFSSL 450



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 72/279 (25%), Positives = 126/279 (45%), Gaps = 51/279 (18%)

Query: 11  VVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPE 70
           VV   + +T +++   +DEA+ LF+ MP ++V+S+NAM++GF QNGR  +A  LF  M  
Sbjct: 258 VVSWNAMVTAFAQNARVDEAEKLFREMPDKSVISWNAMIAGFGQNGRPKQALELFRRMDL 317

Query: 71  RNVVSWTAMICGLADA---------GR-VCEARKLFEEMPERNVVSWNSMVVGLIRNGEL 120
             +       C + DA         GR +C+     +E   +++   NS+     + G  
Sbjct: 318 EGLQPSRMTYCSVLDACANLTASSLGRFICDG---MDEALAKDISVANSICNMYGKCGLP 374

Query: 121 NEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEM----EERNVVTWTSMISGY 176
             AR+ F  M  ++V+SW A+IA Y +     EA+ +F  M     E N +T  + +S  
Sbjct: 375 ELARQTFLEMTYRDVVSWTAIIAAYSQNGYSSEALDIFRIMVQAGVEPNGITLINTLSAC 434

Query: 177 CRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKES-LLLFIEMKGICDNGNNCNV 235
                 +EG  +F           ++++ G  +     ES  L  I++ G          
Sbjct: 435 SHGALFDEGSDIF-----------SSLVSGDYYGVTANESHFLCAIDLLG---------- 473

Query: 236 QSCNSMINGYIRFGRLEEAQNLFDTVPVR-DEISWTSMI 273
                      R G L++A+ L   +P +   ++WTS++
Sbjct: 474 -----------RAGYLKDAETLITKMPFKAGAVAWTSLL 501



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 38/165 (23%), Positives = 77/165 (46%), Gaps = 13/165 (7%)

Query: 376 MYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGT--HPNS 433
           MY  CG +++A  +F +M  R+  SW  ++  +   G   E L ++ +++ S T    ++
Sbjct: 1   MYRDCGRLEDARAVFDSMPLRNEFSWAIIISAYVGAGKEQEALCLYRTLVRSSTEIQADA 60

Query: 434 VTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLL----GRAGKIKEAE 489
             F  +L+AC+    + +G E+   +     ++ G +  V + N L     + G+I  A+
Sbjct: 61  FIFSSVLAACARLKCLEQGLEIHERI-----VKRGVKQDVGLQNALVTMYAKCGRIDRAK 115

Query: 490 EFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPL 534
           +   R+    D   W A++ A     G+ E+A    + ++  D L
Sbjct: 116 QVFDRITHR-DVVSWNAMVSANAEA-GHLEVALKIYQEMVSADVL 158


>gi|224131918|ref|XP_002328140.1| predicted protein [Populus trichocarpa]
 gi|222837655|gb|EEE76020.1| predicted protein [Populus trichocarpa]
          Length = 534

 Score =  282 bits (722), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 161/437 (36%), Positives = 250/437 (57%), Gaps = 25/437 (5%)

Query: 172 MISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEM--KGICDN 229
           +I+ Y + G + +   +F +MP +NVVSWT MI  ++    + ++L   + M  +G+  N
Sbjct: 6   LINMYVKFGLLHDAQDVFDKMPDRNVVSWTTMISAYSAAKLNDKALEFLVLMLREGVRPN 65

Query: 230 --GNNCNVQSCNSMIN------GYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQ 281
               +  +++C+ + N        I+ G       L   V VR     +++ID Y   G+
Sbjct: 66  MFTYSSVLRACDGLFNLRQLHCCIIKIG-------LDSDVFVR-----SALIDVYSRWGE 113

Query: 282 VSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGA 341
           + NA  +F  M   D V W+++I+G  QN    EA  LF  M+  G      T + +  A
Sbjct: 114 LENALRVFDEMVTGDLVVWSSIIAGFAQNSDGDEALRLFKRMKRAGFLAQQTTLTSVLRA 173

Query: 342 AGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSW 401
               A ++LGRQ+H  ++K +   DLIL N L+ MY KCG +++A  +F  MV +D++SW
Sbjct: 174 CTGLALLELGRQVHVHVLKYDQ--DLILNNALLDMYCKCGSLEDANAVFVRMVEKDVISW 231

Query: 402 NSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFD 461
           ++M+ G + +G + E LK+FESM   G  PN VT +G+L ACSHAGLV  G   F++M +
Sbjct: 232 STMIAGLAQNGYSKEALKLFESMKVLGIKPNYVTIVGVLFACSHAGLVEEGLYYFHSMKE 291

Query: 462 VYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIA 521
           ++ I PG EHY  MI+LLGRAG++ EA + +  +  EPD   W ALL AC     N ++A
Sbjct: 292 LFGIDPGREHYGCMIDLLGRAGRLSEAVDLINEMECEPDAVTWRALLNACRV-HRNVDVA 350

Query: 522 EHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGG 581
            HAAK++L LDP +A  +V+L NIYA + R  +  ++R  M  +G++K PGCSW+  +  
Sbjct: 351 IHAAKQILRLDPQDAGTYVLLSNIYANTQRWNDVAEVRRTMTNRGIKKEPGCSWIEVSKQ 410

Query: 582 IQMFLSGDKIPAQVAEI 598
           I  F+ GD+   Q+ EI
Sbjct: 411 IHAFILGDRSHPQIREI 427



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 88/332 (26%), Positives = 151/332 (45%), Gaps = 75/332 (22%)

Query: 239 NSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAV 298
           N +IN Y++FG L +AQ++FD +P R+ +SWT+MI  Y S  ++++              
Sbjct: 4   NILINMYVKFGLLHDAQDVFDKMPDRNVVSWTTMISAY-SAAKLND-------------- 48

Query: 299 AWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVL 358
                           +A    + M   GV P   T+S +  A     N+   RQ+HC +
Sbjct: 49  ----------------KALEFLVLMLREGVRPNMFTYSSVLRACDGLFNL---RQLHCCI 89

Query: 359 MKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETL 418
           +K   +SD+ + + LI +Y++ G ++NA  +F  MV+ DLV W+S++ GF+ +   +E L
Sbjct: 90  IKIGLDSDVFVRSALIDVYSRWGELENALRVFDEMVTGDLVVWSSIIAGFAQNSDGDEAL 149

Query: 419 KVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWE-------------LFNAMFDVY-- 463
           ++F+ M  +G      T   +L AC+   L+  G +             L NA+ D+Y  
Sbjct: 150 RLFKRMKRAGFLAQQTTLTSVLRACTGLALLELGRQVHVHVLKYDQDLILNNALLDMYCK 209

Query: 464 -------------KIQPGPEHYVSMINLLGRAGKIKEAE---EFVLRLPFEPDHRIWGAL 507
                         ++     + +MI  L + G  KEA    E +  L  +P++     +
Sbjct: 210 CGSLEDANAVFVRMVEKDVISWSTMIAGLAQNGYSKEALKLFESMKVLGIKPNYVTIVGV 269

Query: 508 LGACGFCEGNAEIAE------HAAKRLLELDP 533
           L AC     +A + E      H+ K L  +DP
Sbjct: 270 LFAC----SHAGLVEEGLYYFHSMKELFGIDP 297



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 83/339 (24%), Positives = 152/339 (44%), Gaps = 55/339 (16%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGF----LQNGRLSEARRLFEEMPERNV 73
           I  Y K G + +A+ +F  MP RNVVS+  M+S +    L +  L     +  E    N+
Sbjct: 7   INMYVKFGLLHDAQDVFDKMPDRNVVSWTTMISAYSAAKLNDKALEFLVLMLREGVRPNM 66

Query: 74  VSWTAMI----------------------------CGLADA----GRVCEARKLFEEMPE 101
            ++++++                              L D     G +  A ++F+EM  
Sbjct: 67  FTYSSVLRACDGLFNLRQLHCCIIKIGLDSDVFVRSALIDVYSRWGELENALRVFDEMVT 126

Query: 102 RNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCM------MGEAI 155
            ++V W+S++ G  +N + +EA ++F  M     ++    +   +  C       +G  +
Sbjct: 127 GDLVVWSSIIAGFAQNSDGDEALRLFKRMKRAGFLAQQTTLTSVLRACTGLALLELGRQV 186

Query: 156 VLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKE 215
            +     +++++   +++  YC+ G +E+   +F RM  K+V+SW+ MI G A NG+ KE
Sbjct: 187 HVHVLKYDQDLILNNALLDMYCKCGSLEDANAVFVRMVEKDVISWSTMIAGLAQNGYSKE 246

Query: 216 SLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEA-------QNLFDTVPVRDEIS 268
           +L LF  MK +   G   N  +   ++      G +EE        + LF   P R+   
Sbjct: 247 ALKLFESMKVL---GIKPNYVTIVGVLFACSHAGLVEEGLYYFHSMKELFGIDPGREH-- 301

Query: 269 WTSMIDGYLSVGQVSNAYYLFHNMP-DRDAVAWTAMISG 306
           +  MID     G++S A  L + M  + DAV W A+++ 
Sbjct: 302 YGCMIDLLGRAGRLSEAVDLINEMECEPDAVTWRALLNA 340



 Score = 62.4 bits (150), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 34/107 (31%), Positives = 56/107 (52%), Gaps = 12/107 (11%)

Query: 369 LENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESG 428
           L N LI+MY K G++ +A ++F  M  R++VSW +M+  +S   L ++ L+    ML  G
Sbjct: 2   LINILINMYVKFGLLHDAQDVFDKMPDRNVVSWTTMISAYSAAKLNDKALEFLVLMLREG 61

Query: 429 THPNSVTFLGILSACS--------HAGLVSRGWE----LFNAMFDVY 463
             PN  T+  +L AC         H  ++  G +    + +A+ DVY
Sbjct: 62  VRPNMFTYSSVLRACDGLFNLRQLHCCIIKIGLDSDVFVRSALIDVY 108


>gi|218197313|gb|EEC79740.1| hypothetical protein OsI_21088 [Oryza sativa Indica Group]
          Length = 1068

 Score =  282 bits (722), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 193/636 (30%), Positives = 310/636 (48%), Gaps = 54/636 (8%)

Query: 11  VVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPE 70
           V    S I  Y+  G + +A  +F  M  ++ +S+ AM+SG+ +NG   +A  ++  M  
Sbjct: 333 VAFCNSLIQMYTSLGRMGDAGKIFSRMETKDAMSWTAMISGYEKNGFPDKALEVYALMEL 392

Query: 71  RNV----VSWTAMICGLADAGRVCEARKLFEEMPE----RNVVSWNSMVVGLIRNGELNE 122
            NV    V+  + +   A  GR+    KL E        R VV  N+++    ++  +++
Sbjct: 393 HNVNPDDVTIASALAACACLGRLDVGIKLHELAQNKGFIRYVVVANALLEMYAKSKHIDK 452

Query: 123 ARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEM---EERNVVTWTSMISG---- 175
           A +VF  M  K+V+SW++MIAG+       +A+  F  M    + N VT+ + +S     
Sbjct: 453 AIEVFKFMAEKDVVSWSSMIAGFCFNHRSFDALYYFRYMLGHVKPNSVTFIAALSACAAT 512

Query: 176 -------------------------------YCRAGEVEEGYCLFRRMPRKNVVSWTAMI 204
                                          Y + G+    +  F     K+VVSW  M+
Sbjct: 513 GALRSGKEIHAYVLRCGIGSEGYVPNALLDLYVKCGQTSYAWAQFSVHSEKDVVSWNIML 572

Query: 205 GGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFG-RLEE-AQNLFDTVP 262
            GF  +G    +L LF +M                    G +  G +L E AQN      
Sbjct: 573 SGFVAHGLGDIALSLFNQMMYTSLGRMGACSALAACACLGRLDVGIKLHELAQN---KGF 629

Query: 263 VRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFME 322
           +R  +   ++++ Y     +  A  +F  M ++D V+W++MI+G   N    +A Y F  
Sbjct: 630 IRYVVVANALLEMYAKSKHIDKAIEVFKFMAEKDVVSWSSMIAGFCFNHRSFDALYYFRY 689

Query: 323 MRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGV 382
           M  H V P + TF     A  AT  +  G++IH  +++    S+  + N L+ +Y KCG 
Sbjct: 690 MLGH-VKPNSVTFIAALSACAATGALRSGKEIHAYVLRCGIGSEGYVPNALLDLYVKCGQ 748

Query: 383 IDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSA 442
              A+  FS    +D+VSWN M+ GF  HGL +  L +F  M+E G HP+ VTF+ ++ A
Sbjct: 749 TSYAWAQFSVHSEKDVVSWNIMLSGFVAHGLGDIALSLFNQMVEMGEHPDEVTFV-LMCA 807

Query: 443 CSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHR 502
           CS AG+V +GWELF+   + + I P  +HY  M++LL R GK+ EA   + R+P +PD  
Sbjct: 808 CSRAGMVIQGWELFHRRTEKFSIVPNLKHYACMVDLLSRVGKLTEAYNLINRMPIKPDAA 867

Query: 503 IWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDM 562
           +WGALL  C     + E+ E AAK +LEL+P +   HV+LC++Y  +G+  +  ++R  M
Sbjct: 868 VWGALLNGCRI-HRHVELGELAAKVILELEPNDVAYHVLLCDLYTDAGKWAQVARVRKTM 926

Query: 563 GLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
             KG+ +  GCSW+   G    FL+ D+   Q+ EI
Sbjct: 927 REKGLEQDNGCSWVEVKGVTHAFLTDDESHPQIKEI 962



 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 128/462 (27%), Positives = 202/462 (43%), Gaps = 86/462 (18%)

Query: 46  NAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEM------ 99
           NAMLS  ++ G +  A R+F +MPER+V SW  M+ G    G + EA  L+  M      
Sbjct: 135 NAMLSMLVRFGEIWHAWRVFAKMPERDVFSWNVMVGGYGKVGFLEEALDLYYRMLWAGMR 194

Query: 100 PE-----------RNVVSW----------------------NSMVVGLIRNGELNEARKV 126
           P+             +  W                      N++V    + G++  ARKV
Sbjct: 195 PDVYTFPCVLRTCGGIPDWRMGREVHAHVLRFGFGDEVDVLNALVTMYAKCGDIVAARKV 254

Query: 127 FNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEER----NVVTWT------------ 170
           F+ M + + ISWNAMIAG+ E       + LF  M E     N++T T            
Sbjct: 255 FDGMAMTDCISWNAMIAGHFENHECEAGLELFLTMLENEVQPNLMTITSVTVASGMLSEV 314

Query: 171 -----------------------SMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGF 207
                                  S+I  Y   G + +   +F RM  K+ +SWTAMI G+
Sbjct: 315 GFAKEMHGFAVKRGFAIDVAFCNSLIQMYTSLGRMGDAGKIFSRMETKDAMSWTAMISGY 374

Query: 208 AWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVP----V 263
             NGF  ++L ++  M+    N ++  + S  +        GRL+    L +       +
Sbjct: 375 EKNGFPDKALEVYALMELHNVNPDDVTIASALAACA---CLGRLDVGIKLHELAQNKGFI 431

Query: 264 RDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEM 323
           R  +   ++++ Y     +  A  +F  M ++D V+W++MI+G   N    +A Y F  M
Sbjct: 432 RYVVVANALLEMYAKSKHIDKAIEVFKFMAEKDVVSWSSMIAGFCFNHRSFDALYYFRYM 491

Query: 324 RAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVI 383
             H V P + TF     A  AT  +  G++IH  +++    S+  + N L+ +Y KCG  
Sbjct: 492 LGH-VKPNSVTFIAALSACAATGALRSGKEIHAYVLRCGIGSEGYVPNALLDLYVKCGQT 550

Query: 384 DNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESML 425
             A+  FS    +D+VSWN M+ GF  HGL +  L +F  M+
Sbjct: 551 SYAWAQFSVHSEKDVVSWNIMLSGFVAHGLGDIALSLFNQMM 592



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 136/525 (25%), Positives = 239/525 (45%), Gaps = 57/525 (10%)

Query: 14  LTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPER-- 71
           L + +T Y+K G I  A+ +F  M   + +S+NAM++G  +N        LF  M E   
Sbjct: 235 LNALVTMYAKCGDIVAARKVFDGMAMTDCISWNAMIAGHFENHECEAGLELFLTMLENEV 294

Query: 72  --NVVSWTAMICGLADAGRVCEARKLFEEMPER----NVVSWNSMVVGLIRNGELNEARK 125
             N+++ T++         V  A+++     +R    +V   NS++      G + +A K
Sbjct: 295 QPNLMTITSVTVASGMLSEVGFAKEMHGFAVKRGFAIDVAFCNSLIQMYTSLGRMGDAGK 354

Query: 126 VFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERN-------------------- 165
           +F+ M  K+ +SW AMI+GY +     +A+ ++  ME  N                    
Sbjct: 355 IFSRMETKDAMSWTAMISGYEKNGFPDKALEVYALMELHNVNPDDVTIASALAACACLGR 414

Query: 166 -------------------VVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGG 206
                              VV   +++  Y ++  +++   +F+ M  K+VVSW++MI G
Sbjct: 415 LDVGIKLHELAQNKGFIRYVVVANALLEMYAKSKHIDKAIEVFKFMAEKDVVSWSSMIAG 474

Query: 207 FAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNS-MINGYIRFGRLEEAQNLFDTVPVRD 265
           F +N    ++L  F  M G     +   + + ++    G +R G+   A  L   +    
Sbjct: 475 FCFNHRSFDALYYFRYMLGHVKPNSVTFIAALSACAATGALRSGKEIHAYVLRCGIGSEG 534

Query: 266 EISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRA 325
            +   +++D Y+  GQ S A+  F    ++D V+W  M+SG V + L   A  LF +M  
Sbjct: 535 YVP-NALLDLYVKCGQTSYAWAQFSVHSEKDVVSWNIMLSGFVAHGLGDIALSLFNQMMY 593

Query: 326 HGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDN 385
             +  + A  ++   A      +D+G ++H +         +++ N L+ MYAK   ID 
Sbjct: 594 TSLGRMGACSALA--ACACLGRLDVGIKLHELAQNKGFIRYVVVANALLEMYAKSKHIDK 651

Query: 386 AYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSH 445
           A  +F  M  +D+VSW+SM+ GF  +  + + L  F  ML     PNSVTF+  LSAC+ 
Sbjct: 652 AIEVFKFMAEKDVVSWSSMIAGFCFNHRSFDALYYFRYML-GHVKPNSVTFIAALSACAA 710

Query: 446 AGLVSRGWELFNAMFDVYKIQPGPEHYV--SMINLLGRAGKIKEA 488
            G +  G E+      V +   G E YV  ++++L  + G+   A
Sbjct: 711 TGALRSGKEIHAY---VLRCGIGSEGYVPNALLDLYVKCGQTSYA 752



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 133/530 (25%), Positives = 215/530 (40%), Gaps = 131/530 (24%)

Query: 46  NAMLSGFLQNGRLSEARRLFEEMPER-NVVSWTAMICGLADAGRVCEARKLFE------- 97
           +A L     +G+L++A  L E  PE  +  ++ A+        R+CE R+  +       
Sbjct: 68  SAALRALCSHGQLAQALWLLESSPEPPDEGAYVALF-------RLCEWRRAVDAGMRACA 120

Query: 98  ----EMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGE 153
               E P   +   N+M+  L+R GE+  A +VF  MP ++V SWN M+ GY +   + E
Sbjct: 121 RADAEHPSFGLRLGNAMLSMLVRFGEIWHAWRVFAKMPERDVFSWNVMVGGYGKVGFLEE 180

Query: 154 AIVLFEEM-----------------------------------------EERNVVTWTSM 172
           A+ L+  M                                         +E +V+   ++
Sbjct: 181 ALDLYYRMLWAGMRPDVYTFPCVLRTCGGIPDWRMGREVHAHVLRFGFGDEVDVL--NAL 238

Query: 173 ISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFI----------- 221
           ++ Y + G++     +F  M   + +SW AMI G   N   +  L LF+           
Sbjct: 239 VTMYAKCGDIVAARKVFDGMAMTDCISWNAMIAGHFENHECEAGLELFLTMLENEVQPNL 298

Query: 222 --------------------EMKGIC-DNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDT 260
                               EM G     G   +V  CNS+I  Y   GR+ +A  +F  
Sbjct: 299 MTITSVTVASGMLSEVGFAKEMHGFAVKRGFAIDVAFCNSLIQMYTSLGRMGDAGKIFSR 358

Query: 261 VPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLF 320
           +  +D +SWT+MI GY   G            PD+                    A  ++
Sbjct: 359 METKDAMSWTAMISGYEKNG-----------FPDK--------------------ALEVY 387

Query: 321 MEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKC 380
             M  H V P + T +    A      +D+G ++H +         +++ N L+ MYAK 
Sbjct: 388 ALMELHNVNPDDVTIASALAACACLGRLDVGIKLHELAQNKGFIRYVVVANALLEMYAKS 447

Query: 381 GVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGIL 440
             ID A  +F  M  +D+VSW+SM+ GF  +  + + L  F  ML     PNSVTF+  L
Sbjct: 448 KHIDKAIEVFKFMAEKDVVSWSSMIAGFCFNHRSFDALYYFRYML-GHVKPNSVTFIAAL 506

Query: 441 SACSHAGLVSRGWELFNAMFDVYKIQPGPEHYV--SMINLLGRAGKIKEA 488
           SAC+  G +  G E+      V +   G E YV  ++++L  + G+   A
Sbjct: 507 SACAATGALRSGKEIHAY---VLRCGIGSEGYVPNALLDLYVKCGQTSYA 553



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 95/353 (26%), Positives = 168/353 (47%), Gaps = 21/353 (5%)

Query: 171 SMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEM--KGICD 228
           +M+S   R GE+   + +F +MP ++V SW  M+GG+   GF +E+L L+  M   G+  
Sbjct: 136 AMLSMLVRFGEIWHAWRVFAKMPERDVFSWNVMVGGYGKVGFLEEALDLYYRMLWAGMRP 195

Query: 229 NGNN--CNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEIS-WTSMIDGYLSVGQVSNA 285
           +     C +++C  + +   R GR   A  L       DE+    +++  Y   G +  A
Sbjct: 196 DVYTFPCVLRTCGGIPD--WRMGREVHAHVL--RFGFGDEVDVLNALVTMYAKCGDIVAA 251

Query: 286 YYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGAT 345
             +F  M   D ++W AMI+G  +N        LF+ M  + V P   T + +  A+G  
Sbjct: 252 RKVFDGMAMTDCISWNAMIAGHFENHECEAGLELFLTMLENEVQPNLMTITSVTVASGML 311

Query: 346 ANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMV 405
           + +   +++H   +K     D+   N LI MY   G + +A  IFS M ++D +SW +M+
Sbjct: 312 SEVGFAKEMHGFAVKRGFAIDVAFCNSLIQMYTSLGRMGDAGKIFSRMETKDAMSWTAMI 371

Query: 406 MGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELF----NAMFD 461
            G+  +G  ++ L+V+  M     +P+ VT    L+AC+  G +  G +L     N  F 
Sbjct: 372 SGYEKNGFPDKALEVYALMELHNVNPDDVTIASALAACACLGRLDVGIKLHELAQNKGFI 431

Query: 462 VYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFC 514
            Y +        +++ +  ++  I +A E V +   E D   W +++   GFC
Sbjct: 432 RYVVVAN-----ALLEMYAKSKHIDKAIE-VFKFMAEKDVVSWSSMIA--GFC 476


>gi|242051881|ref|XP_002455086.1| hypothetical protein SORBIDRAFT_03g004125 [Sorghum bicolor]
 gi|241927061|gb|EES00206.1| hypothetical protein SORBIDRAFT_03g004125 [Sorghum bicolor]
          Length = 627

 Score =  282 bits (722), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 155/434 (35%), Positives = 240/434 (55%), Gaps = 3/434 (0%)

Query: 167 VTWTSMISGYCRAGEVEEGYCLFRRMPRKNVV-SWTAMIGGFAWNGFHKESLLLFIEMKG 225
           V W ++ISG+ R G   E    F  M R     +    +   +  G     +LL +++ G
Sbjct: 88  VAWNALISGHNRGGRFGESCGSFVDMARAGAAPTPVTYVSVLSACGKGTRDVLLGMQVHG 147

Query: 226 -ICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSN 284
            +  +G   +++  N++++ Y     +  A  +FD + VR  +SWTS++ G   +GQV  
Sbjct: 148 RVVGSGVLPDLRVENALVDMYAECADMGSAWKVFDGMQVRSVVSWTSLLSGLARLGQVDE 207

Query: 285 AYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGA 344
           A  LF  MP+RD V+WTAMI G V    F EA  +F EM+   V     T   +  A   
Sbjct: 208 ARDLFDRMPERDTVSWTAMIDGYVWAARFREALEMFREMQYSNVSADEFTMVSVITACAQ 267

Query: 345 TANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSM 404
              +++G  +   + +   + D  + N LI MY+KCG I+ A ++F  M  RD  +W ++
Sbjct: 268 LGALEMGEWVRVYMSRQGIKMDAFVGNALIDMYSKCGSIERALDVFKGMHHRDKFTWTAI 327

Query: 405 VMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYK 464
           ++G + +G   E +++F  M+     P+ VTF+G+L+AC+HAGLV +G E F +M + Y 
Sbjct: 328 ILGLAVNGYEEEAIEMFHRMIRVSETPDEVTFIGVLTACTHAGLVDKGREFFLSMIEAYN 387

Query: 465 IQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHA 524
           I P   HY  +I+LLGRAGKI EA + + ++P  P+  IWG LL AC    GN+EI E  
Sbjct: 388 IAPNVVHYGCIIDLLGRAGKITEALDTIDQMPMTPNSTIWGTLLAACRV-HGNSEIGELV 446

Query: 525 AKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQM 584
           A+RLLELDP N+  +++L NIYA   R  +  +LR  +  KG++K PGCS +  +G I  
Sbjct: 447 AERLLELDPENSMVYILLSNIYAKCNRWEDVRRLRHAIMEKGIKKEPGCSLIEMDGIIHE 506

Query: 585 FLSGDKIPAQVAEI 598
           F++GD+      EI
Sbjct: 507 FVAGDQSHPMSKEI 520



 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 101/368 (27%), Positives = 171/368 (46%), Gaps = 18/368 (4%)

Query: 74  VSWTAMICGLADAGRVCEARKLFEEMPERNV----VSWNSMVVGLIRNGE-----LNEAR 124
           V+W A+I G    GR  E+   F +M         V++ S++    +        +    
Sbjct: 88  VAWNALISGHNRGGRFGESCGSFVDMARAGAAPTPVTYVSVLSACGKGTRDVLLGMQVHG 147

Query: 125 KVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEE 184
           +V  S  + ++   NA++  Y EC  MG A  +F+ M+ R+VV+WTS++SG  R G+V+E
Sbjct: 148 RVVGSGVLPDLRVENALVDMYAECADMGSAWKVFDGMQVRSVVSWTSLLSGLARLGQVDE 207

Query: 185 GYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMING 244
              LF RMP ++ VSWTAMI G+ W    +E+L +F EM+    +  + +  +  S+I  
Sbjct: 208 ARDLFDRMPERDTVSWTAMIDGYVWAARFREALEMFREMQ---YSNVSADEFTMVSVITA 264

Query: 245 YIRFGRLEEAQNLFDTVPVR----DEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAW 300
             + G LE  + +   +  +    D     ++ID Y   G +  A  +F  M  RD   W
Sbjct: 265 CAQLGALEMGEWVRVYMSRQGIKMDAFVGNALIDMYSKCGSIERALDVFKGMHHRDKFTW 324

Query: 301 TAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMK 360
           TA+I GL  N    EA  +F  M      P   TF  +  A      +D GR+    +++
Sbjct: 325 TAIILGLAVNGYEEEAIEMFHRMIRVSETPDEVTFIGVLTACTHAGLVDKGREFFLSMIE 384

Query: 361 TES-ESDLILENCLISMYAKCGVIDNAYNIFSNM-VSRDLVSWNSMVMGFSHHGLANETL 418
             +   +++   C+I +  + G I  A +    M ++ +   W +++     HG +    
Sbjct: 385 AYNIAPNVVHYGCIIDLLGRAGKITEALDTIDQMPMTPNSTIWGTLLAACRVHGNSEIGE 444

Query: 419 KVFESMLE 426
            V E +LE
Sbjct: 445 LVAERLLE 452



 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 80/258 (31%), Positives = 128/258 (49%), Gaps = 14/258 (5%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWT 77
           +  Y++   +  A  +F  M  R+VVS+ ++LSG  + G++ EAR LF+ MPER+ VSWT
Sbjct: 165 VDMYAECADMGSAWKVFDGMQVRSVVSWTSLLSGLARLGQVDEARDLFDRMPERDTVSWT 224

Query: 78  AMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNG------ELNEARKVFNS-M 130
           AMI G   A R  EA ++F EM   NV +    +V +I         E+ E  +V+ S  
Sbjct: 225 AMIDGYVWAARFREALEMFREMQYSNVSADEFTMVSVITACAQLGALEMGEWVRVYMSRQ 284

Query: 131 PIK-NVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLF 189
            IK +    NA+I  Y +C  +  A+ +F+ M  R+  TWT++I G    G  EE   +F
Sbjct: 285 GIKMDAFVGNALIDMYSKCGSIERALDVFKGMHHRDKFTWTAIILGLAVNGYEEEAIEMF 344

Query: 190 RRMPR----KNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGY 245
            RM R     + V++  ++      G   +    F+ M    +   N     C  +I+  
Sbjct: 345 HRMIRVSETPDEVTFIGVLTACTHAGLVDKGREFFLSMIEAYNIAPNVVHYGC--IIDLL 402

Query: 246 IRFGRLEEAQNLFDTVPV 263
            R G++ EA +  D +P+
Sbjct: 403 GRAGKITEALDTIDQMPM 420


>gi|297814704|ref|XP_002875235.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297321073|gb|EFH51494.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 579

 Score =  282 bits (722), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 158/432 (36%), Positives = 249/432 (57%), Gaps = 15/432 (3%)

Query: 172 MISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEM--KGICDN 229
           +I+ Y +   + + + LF +MP++NV+SWT MI  ++    H+++L L + M   G+  N
Sbjct: 54  LINMYVKFNLLNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDGVRPN 113

Query: 230 GNNCN--VQSCNSMIN-GYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAY 286
               +  +++CN M +   +  G ++E   L   V VR     +++ID +  +G+  +A 
Sbjct: 114 VYTYSSVLRACNGMSDVRMLHCGIIKEG--LESDVYVR-----SALIDVFAKLGEPEDAL 166

Query: 287 YLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATA 346
            +F  M   DA+ W ++I G  QN     A  LF  M+  G     AT + +  A    A
Sbjct: 167 SVFDEMVTGDAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLA 226

Query: 347 NIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVM 406
            ++LG Q H  ++K +   DLIL N L+ MY KCG +++A  +F+ M  RD+++W++M+ 
Sbjct: 227 LLELGMQAHVHIVKYDQ--DLILNNALVDMYCKCGSLEDARRVFNQMKERDVITWSTMIS 284

Query: 407 GFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQ 466
           G + +G + E LK+FE M  SGT PN +T +G+L ACSHAGL+  GW  F +M  +Y I 
Sbjct: 285 GLAQNGYSQEALKLFELMKSSGTKPNYITIVGVLFACSHAGLLEDGWYYFRSMKKLYGIN 344

Query: 467 PGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAK 526
           PG EHY  MI+LLG+AGK+ +A + +  +  EPD   W  LLGAC   + N  +AE+AAK
Sbjct: 345 PGREHYGCMIDLLGKAGKLDDAVKLLNEMECEPDAVTWRTLLGACRV-QRNMVLAEYAAK 403

Query: 527 RLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFL 586
           +++ LDP +A  + VL NIYA S +     ++R  M   G++K PGCSW+  N  I  F+
Sbjct: 404 KVIALDPEDAGTYTVLSNIYANSQKWDSVEEIRKRMRDIGIKKEPGCSWIEVNKQIHAFI 463

Query: 587 SGDKIPAQVAEI 598
            GD+   Q+ E+
Sbjct: 464 IGDESHPQIVEV 475



 Score =  102 bits (254), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 92/372 (24%), Positives = 162/372 (43%), Gaps = 58/372 (15%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGF----------------LQNGR---- 57
           I  Y K   +++A  LF  MPQRNV+S+  M+S +                L++G     
Sbjct: 55  INMYVKFNLLNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDGVRPNV 114

Query: 58  ------------LSEARRL----FEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPE 101
                       +S+ R L     +E  E +V   +A+I   A  G   +A  +F+EM  
Sbjct: 115 YTYSSVLRACNGMSDVRMLHCGIIKEGLESDVYVRSALIDVFAKLGEPEDALSVFDEMVT 174

Query: 102 RNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEM 161
            + + WNS++ G  +N   + A ++F  M     I+  A +   +  C  G A++     
Sbjct: 175 GDAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACT-GLALLELGMQ 233

Query: 162 EERNVVTW-------TSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHK 214
              ++V +        +++  YC+ G +E+   +F +M  ++V++W+ MI G A NG+ +
Sbjct: 234 AHVHIVKYDQDLILNNALVDMYCKCGSLEDARRVFNQMKERDVITWSTMISGLAQNGYSQ 293

Query: 215 ESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEA-------QNLFDTVPVRDEI 267
           E+L LF  MK    +G   N  +   ++      G LE+        + L+   P R+  
Sbjct: 294 EALKLFELMKS---SGTKPNYITIVGVLFACSHAGLLEDGWYYFRSMKKLYGINPGREH- 349

Query: 268 SWTSMIDGYLSVGQVSNAYYLFHNMP-DRDAVAWTAMISGLVQNELFVEATYLFMEMRAH 326
            +  MID     G++ +A  L + M  + DAV W  ++         V A Y   ++ A 
Sbjct: 350 -YGCMIDLLGKAGKLDDAVKLLNEMECEPDAVTWRTLLGACRVQRNMVLAEYAAKKVIAL 408

Query: 327 GVPPLNATFSVL 338
             P    T++VL
Sbjct: 409 D-PEDAGTYTVL 419



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 67/248 (27%), Positives = 116/248 (46%), Gaps = 47/248 (18%)

Query: 229 NGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYL 288
           NG+   +   N +IN Y++F  L +A  LFD +P R+ ISWT+MI  Y            
Sbjct: 42  NGHQPMMFLVNVLINMYVKFNLLNDAHQLFDQMPQRNVISWTTMISAY------------ 89

Query: 289 FHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANI 348
                               + ++  +A  L + M   GV P   T+S +  A    +++
Sbjct: 90  -------------------SKCKIHQKALELLVLMLRDGVRPNVYTYSSVLRACNGMSDV 130

Query: 349 DLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGF 408
              R +HC ++K   ESD+ + + LI ++AK G  ++A ++F  MV+ D + WNS++ GF
Sbjct: 131 ---RMLHCGIIKEGLESDVYVRSALIDVFAKLGEPEDALSVFDEMVTGDAIVWNSIIGGF 187

Query: 409 SHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWE-------------L 455
           + +  ++  L++F+ M  +G      T   +L AC+   L+  G +             L
Sbjct: 188 AQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLELGMQAHVHIVKYDQDLIL 247

Query: 456 FNAMFDVY 463
            NA+ D+Y
Sbjct: 248 NNALVDMY 255



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 44/167 (26%), Positives = 83/167 (49%), Gaps = 12/167 (7%)

Query: 323 MRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGV 382
           +++HG+   +AT+S L     +   +  G  I   L     +  + L N LI+MY K  +
Sbjct: 4   LQSHGLWADSATYSELIKCCLSHRAVHEGNLICRHLYFNGHQPMMFLVNVLINMYVKFNL 63

Query: 383 IDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSA 442
           +++A+ +F  M  R+++SW +M+  +S   +  + L++   ML  G  PN  T+  +L A
Sbjct: 64  LNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDGVRPNVYTYSSVLRA 123

Query: 443 CS--------HAGLVSRGWE----LFNAMFDVYKIQPGPEHYVSMIN 477
           C+        H G++  G E    + +A+ DV+     PE  +S+ +
Sbjct: 124 CNGMSDVRMLHCGIIKEGLESDVYVRSALIDVFAKLGEPEDALSVFD 170


>gi|296089800|emb|CBI39619.3| unnamed protein product [Vitis vinifera]
          Length = 640

 Score =  282 bits (722), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 158/452 (34%), Positives = 257/452 (56%), Gaps = 23/452 (5%)

Query: 154 AIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNV----VSWTAMIGGFAW 209
           ++ +F+ +E  N   W +M+  Y ++   E+   L++ M + NV     ++  ++   A 
Sbjct: 82  SLQIFDRIENSNGFMWNTMMRAYIQSNSAEKALLLYKLMVKNNVGPDNYTYPLVVQACAV 141

Query: 210 NGFHKESLLLFIEMKGICDN----GNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRD 265
                   LL    K I D+    G + +V   N++IN Y   G + +A+ LFD  PV D
Sbjct: 142 R-------LLEFGGKEIHDHVLKVGFDSDVYVQNTLINMYAVCGNMRDARKLFDESPVLD 194

Query: 266 EISWTSMIDGYL---SVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFME 322
            +SW S++ GY+    +GQV  A+ LF+ M ++D V+W+A+ISG  QN ++ EA  +F+E
Sbjct: 195 SVSWNSILAGYVKKGDMGQVMEAWKLFNEMDEKDMVSWSALISGYEQNGMYEEALVMFIE 254

Query: 323 MRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYA---- 378
           M A+G+         +  A    + +  G+ IH ++++   ES + L+N LI MY+    
Sbjct: 255 MNANGMRLDEVVVVSVLSACAHLSIVKTGKMIHGLVIRMGIESYVNLQNALIHMYSDMYM 314

Query: 379 KCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLG 438
           KCG ++NA  +F+ M  + + SWN++++G + +GL   +L +F  M  +G  PN +TF+G
Sbjct: 315 KCGCVENALEVFNGMEEKGVSSWNALIIGLAVNGLVERSLDMFSEMKNNGVIPNEITFMG 374

Query: 439 ILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFE 498
           +L AC H GLV  G   F +M + + I+P  +HY  M++LLGRAG + EAE+ +  +P  
Sbjct: 375 VLGACRHMGLVDEGRCHFASMIEKHGIEPNVKHYGCMVDLLGRAGLLNEAEKLIESMPMA 434

Query: 499 PDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKL 558
           PD   WGALLGAC    G+ E+ E   ++L+EL P +   HV+L NI+A+ G   +  ++
Sbjct: 435 PDVATWGALLGACK-KHGDTEMGERVGRKLIELQPDHDGFHVLLSNIFASKGDWEDVLEV 493

Query: 559 RMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDK 590
           R  M  +GV K PGCS +  NG +  FL+GDK
Sbjct: 494 RGMMKQQGVVKTPGCSLIEANGVVHEFLAGDK 525



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 81/287 (28%), Positives = 128/287 (44%), Gaps = 55/287 (19%)

Query: 70  ERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELN---EARKV 126
           + +V     +I   A  G + +ARKLF+E P  + VSWNS++ G ++ G++    EA K+
Sbjct: 161 DSDVYVQNTLINMYAVCGNMRDARKLFDESPVLDSVSWNSILAGYVKKGDMGQVMEAWKL 220

Query: 127 FNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEER-------------------NVV 167
           FN M  K+++SW+A+I+GY +  M  EA+V+F EM                      ++V
Sbjct: 221 FNEMDEKDMVSWSALISGYEQNGMYEEALVMFIEMNANGMRLDEVVVVSVLSACAHLSIV 280

Query: 168 TWTSMISG------------------------YCRAGEVEEGYCLFRRMPRKNVVSWTAM 203
               MI G                        Y + G VE    +F  M  K V SW A+
Sbjct: 281 KTGKMIHGLVIRMGIESYVNLQNALIHMYSDMYMKCGCVENALEVFNGMEEKGVSSWNAL 340

Query: 204 IGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPV 263
           I G A NG  + SL +F EMK   +NG   N  +   ++      G ++E +  F ++  
Sbjct: 341 IIGLAVNGLVERSLDMFSEMK---NNGVIPNEITFMGVLGACRHMGLVDEGRCHFASMIE 397

Query: 264 RDEIS-----WTSMIDGYLSVGQVSNAYYLFHNMP-DRDAVAWTAMI 304
           +  I      +  M+D     G ++ A  L  +MP   D   W A++
Sbjct: 398 KHGIEPNVKHYGCMVDLLGRAGLLNEAEKLIESMPMAPDVATWGALL 444



 Score = 89.0 bits (219), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 78/278 (28%), Positives = 141/278 (50%), Gaps = 26/278 (9%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQN---GRLSEARRLFEEMPERNVV 74
           I  Y+  G + +A+ LF   P  + VS+N++L+G+++    G++ EA +LF EM E+++V
Sbjct: 171 INMYAVCGNMRDARKLFDESPVLDSVSWNSILAGYVKKGDMGQVMEAWKLFNEMDEKDMV 230

Query: 75  SWTAMICGLADAGRVCEARKLFEEM-------PERNVVSWNSMV--VGLIRNGELNEARK 125
           SW+A+I G    G   EA  +F EM        E  VVS  S    + +++ G++     
Sbjct: 231 SWSALISGYEQNGMYEEALVMFIEMNANGMRLDEVVVVSVLSACAHLSIVKTGKMIHGLV 290

Query: 126 VFNSMPIKNVISW-NAMI----AGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAG 180
           +   M I++ ++  NA+I      Y++C  +  A+ +F  MEE+ V +W ++I G    G
Sbjct: 291 I--RMGIESYVNLQNALIHMYSDMYMKCGCVENALEVFNGMEEKGVSSWNALIIGLAVNG 348

Query: 181 EVEEGYCLFRRMPRKNV----VSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQ 236
            VE    +F  M    V    +++  ++G     G   E    F  M  I  +G   NV+
Sbjct: 349 LVERSLDMFSEMKNNGVIPNEITFMGVLGACRHMGLVDEGRCHFASM--IEKHGIEPNVK 406

Query: 237 SCNSMINGYIRFGRLEEAQNLFDTVPVRDEI-SWTSMI 273
               M++   R G L EA+ L +++P+  ++ +W +++
Sbjct: 407 HYGCMVDLLGRAGLLNEAEKLIESMPMAPDVATWGALL 444



 Score = 65.9 bits (159), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 64/246 (26%), Positives = 100/246 (40%), Gaps = 53/246 (21%)

Query: 19  TKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEM---------- 68
            K    G + EA  LF  M ++++VS++A++SG+ QNG   EA  +F EM          
Sbjct: 206 VKKGDMGQVMEAWKLFNEMDEKDMVSWSALISGYEQNGMYEEALVMFIEMNANGMRLDEV 265

Query: 69  ---------PERNVVSWTAMICGLA------------------------DAGRVCEARKL 95
                       ++V    MI GL                           G V  A ++
Sbjct: 266 VVVSVLSACAHLSIVKTGKMIHGLVIRMGIESYVNLQNALIHMYSDMYMKCGCVENALEV 325

Query: 96  FEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECC----MM 151
           F  M E+ V SWN++++GL  NG +  +  +F+ M    VI       G +  C    ++
Sbjct: 326 FNGMEEKGVSSWNALIIGLAVNGLVERSLDMFSEMKNNGVIPNEITFMGVLGACRHMGLV 385

Query: 152 GEAIVLFEEMEER-----NVVTWTSMISGYCRAGEVEEGYCLFRRMP-RKNVVSWTAMIG 205
            E    F  M E+     NV  +  M+    RAG + E   L   MP   +V +W A++G
Sbjct: 386 DEGRCHFASMIEKHGIEPNVKHYGCMVDLLGRAGLLNEAEKLIESMPMAPDVATWGALLG 445

Query: 206 GFAWNG 211
               +G
Sbjct: 446 ACKKHG 451


>gi|28392910|gb|AAO41891.1| putative selenium-binding protein [Arabidopsis thaliana]
          Length = 630

 Score =  282 bits (722), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 166/495 (33%), Positives = 270/495 (54%), Gaps = 27/495 (5%)

Query: 119 ELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIV--------LFEEMEERNVVTWT 170
           +L  A K  +S+    + + +A  +  ++CC+   A+         L+       +    
Sbjct: 41  DLPRAMKAMDSLQSHGLWADSATYSELIKCCISNRAVHEGNLICRHLYFNGHRPMMFLVN 100

Query: 171 SMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDN- 229
            +I+ Y +   + + + LF +MP++NV+SWT MI  ++    H+++L L + M  + DN 
Sbjct: 101 VLINMYVKFNLLNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLM--LRDNV 158

Query: 230 -----GNNCNVQSCNSMIN-GYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVS 283
                  +  ++SCN M +   +  G ++E   L   V VR     +++ID +  +G+  
Sbjct: 159 RPNVYTYSSVLRSCNGMSDVRMLHCGIIKEG--LESDVFVR-----SALIDVFAKLGEPE 211

Query: 284 NAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAG 343
           +A  +F  M   DA+ W ++I G  QN     A  LF  M+  G     AT + +  A  
Sbjct: 212 DALSVFDEMVTGDAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACT 271

Query: 344 ATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNS 403
             A ++LG Q H  ++K +   DLIL N L+ MY KCG +++A  +F+ M  RD+++W++
Sbjct: 272 GLALLELGMQAHVHIVKYDQ--DLILNNALVDMYCKCGSLEDALRVFNQMKERDVITWST 329

Query: 404 MVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVY 463
           M+ G + +G + E LK+FE M  SGT PN +T +G+L ACSHAGL+  GW  F +M  +Y
Sbjct: 330 MISGLAQNGYSQEALKLFERMKSSGTKPNYITIVGVLFACSHAGLLEDGWYYFRSMKKLY 389

Query: 464 KIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEH 523
            I P  EHY  MI+LLG+AGK+ +A + +  +  EPD   W  LLGAC   + N  +AE+
Sbjct: 390 GIDPVREHYGCMIDLLGKAGKLDDAVKLLNEMECEPDAVTWRTLLGACRV-QRNMVLAEY 448

Query: 524 AAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQ 583
           AAK+++ LDP +A  + +L NIYA S +     ++R  M  +G++K PGCSW+  N  I 
Sbjct: 449 AAKKVIALDPEDAGTYTLLSNIYANSQKWDSVEEIRTRMRDRGIKKEPGCSWIEVNKQIH 508

Query: 584 MFLSGDKIPAQVAEI 598
            F+ GD    Q+ E+
Sbjct: 509 AFIIGDNSHPQIVEV 523



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 88/340 (25%), Positives = 146/340 (42%), Gaps = 47/340 (13%)

Query: 108 NSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLF--------- 158
           N ++   ++   LN+A ++F+ MP +NVISW  MI+ Y +C +  +A+ L          
Sbjct: 100 NVLINMYVKFNLLNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDNVR 159

Query: 159 ---------------------------EEMEERNVVTWTSMISGYCRAGEVEEGYCLFRR 191
                                      +E  E +V   +++I  + + GE E+   +F  
Sbjct: 160 PNVYTYSSVLRSCNGMSDVRMLHCGIIKEGLESDVFVRSALIDVFAKLGEPEDALSVFDE 219

Query: 192 MPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRL 251
           M   + + W ++IGGFA N     +L LF  MK     G      +  S++        L
Sbjct: 220 MVTGDAIVWNSIIGGFAQNSRSDVALELFKRMK---RAGFIAEQATLTSVLRACTGLALL 276

Query: 252 EEAQNLFDTVPVRDE--ISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQ 309
           E        +   D+  I   +++D Y   G + +A  +F+ M +RD + W+ MISGL Q
Sbjct: 277 ELGMQAHVHIVKYDQDLILNNALVDMYCKCGSLEDALRVFNQMKERDVITWSTMISGLAQ 336

Query: 310 NELFVEATYLFMEMRAHGVPPLNATF-SVLFGAAGATANIDLGRQIHCVLMKTESESDLI 368
           N    EA  LF  M++ G  P   T   VLF  + A    D         MK     D +
Sbjct: 337 NGYSQEALKLFERMKSSGTKPNYITIVGVLFACSHAGLLEDGWYYFRS--MKKLYGIDPV 394

Query: 369 LEN--CLISMYAKCGVIDNAYNIFSNM-VSRDLVSWNSMV 405
            E+  C+I +  K G +D+A  + + M    D V+W +++
Sbjct: 395 REHYGCMIDLLGKAGKLDDAVKLLNEMECEPDAVTWRTLL 434



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 88/353 (24%), Positives = 153/353 (43%), Gaps = 59/353 (16%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQ----------------------- 54
           I  Y K   +++A  LF  MPQRNV+S+  M+S + +                       
Sbjct: 103 INMYVKFNLLNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDNVRPNV 162

Query: 55  ----------NGRLSEARRL----FEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMP 100
                     NG +S+ R L     +E  E +V   +A+I   A  G   +A  +F+EM 
Sbjct: 163 YTYSSVLRSCNG-MSDVRMLHCGIIKEGLESDVFVRSALIDVFAKLGEPEDALSVFDEMV 221

Query: 101 ERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEE 160
             + + WNS++ G  +N   + A ++F  M     I+  A +   +  C  G A++    
Sbjct: 222 TGDAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRAC-TGLALLELGM 280

Query: 161 MEERNVVTW-------TSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFH 213
               ++V +        +++  YC+ G +E+   +F +M  ++V++W+ MI G A NG+ 
Sbjct: 281 QAHVHIVKYDQDLILNNALVDMYCKCGSLEDALRVFNQMKERDVITWSTMISGLAQNGYS 340

Query: 214 KESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEA-------QNLFDTVPVRDE 266
           +E+L LF  MK    +G   N  +   ++      G LE+        + L+   PVR+ 
Sbjct: 341 QEALKLFERMKS---SGTKPNYITIVGVLFACSHAGLLEDGWYYFRSMKKLYGIDPVREH 397

Query: 267 ISWTSMIDGYLSVGQVSNAYYLFHNMP-DRDAVAWTAMISGLVQNELFVEATY 318
             +  MID     G++ +A  L + M  + DAV W  ++         V A Y
Sbjct: 398 --YGCMIDLLGKAGKLDDAVKLLNEMECEPDAVTWRTLLGACRVQRNMVLAEY 448


>gi|15227724|ref|NP_178481.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206038|sp|Q9SI53.1|PP147_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g03880, mitochondrial; Flags: Precursor
 gi|4582435|gb|AAD24821.1| putative selenium-binding protein [Arabidopsis thaliana]
 gi|330250668|gb|AEC05762.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 630

 Score =  282 bits (722), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 166/495 (33%), Positives = 270/495 (54%), Gaps = 27/495 (5%)

Query: 119 ELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIV--------LFEEMEERNVVTWT 170
           +L  A K  +S+    + + +A  +  ++CC+   A+         L+       +    
Sbjct: 41  DLPRAMKAMDSLQSHGLWADSATYSELIKCCISNRAVHEGNLICRHLYFNGHRPMMFLVN 100

Query: 171 SMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDN- 229
            +I+ Y +   + + + LF +MP++NV+SWT MI  ++    H+++L L + M  + DN 
Sbjct: 101 VLINMYVKFNLLNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLM--LRDNV 158

Query: 230 -----GNNCNVQSCNSMIN-GYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVS 283
                  +  ++SCN M +   +  G ++E   L   V VR     +++ID +  +G+  
Sbjct: 159 RPNVYTYSSVLRSCNGMSDVRMLHCGIIKEG--LESDVFVR-----SALIDVFAKLGEPE 211

Query: 284 NAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAG 343
           +A  +F  M   DA+ W ++I G  QN     A  LF  M+  G     AT + +  A  
Sbjct: 212 DALSVFDEMVTGDAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACT 271

Query: 344 ATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNS 403
             A ++LG Q H  ++K +   DLIL N L+ MY KCG +++A  +F+ M  RD+++W++
Sbjct: 272 GLALLELGMQAHVHIVKYDQ--DLILNNALVDMYCKCGSLEDALRVFNQMKERDVITWST 329

Query: 404 MVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVY 463
           M+ G + +G + E LK+FE M  SGT PN +T +G+L ACSHAGL+  GW  F +M  +Y
Sbjct: 330 MISGLAQNGYSQEALKLFERMKSSGTKPNYITIVGVLFACSHAGLLEDGWYYFRSMKKLY 389

Query: 464 KIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEH 523
            I P  EHY  MI+LLG+AGK+ +A + +  +  EPD   W  LLGAC   + N  +AE+
Sbjct: 390 GIDPVREHYGCMIDLLGKAGKLDDAVKLLNEMECEPDAVTWRTLLGACRV-QRNMVLAEY 448

Query: 524 AAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQ 583
           AAK+++ LDP +A  + +L NIYA S +     ++R  M  +G++K PGCSW+  N  I 
Sbjct: 449 AAKKVIALDPEDAGTYTLLSNIYANSQKWDSVEEIRTRMRDRGIKKEPGCSWIEVNKQIH 508

Query: 584 MFLSGDKIPAQVAEI 598
            F+ GD    Q+ E+
Sbjct: 509 AFIIGDNSHPQIVEV 523



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 88/340 (25%), Positives = 146/340 (42%), Gaps = 47/340 (13%)

Query: 108 NSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLF--------- 158
           N ++   ++   LN+A ++F+ MP +NVISW  MI+ Y +C +  +A+ L          
Sbjct: 100 NVLINMYVKFNLLNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDNVR 159

Query: 159 ---------------------------EEMEERNVVTWTSMISGYCRAGEVEEGYCLFRR 191
                                      +E  E +V   +++I  + + GE E+   +F  
Sbjct: 160 PNVYTYSSVLRSCNGMSDVRMLHCGIIKEGLESDVFVRSALIDVFAKLGEPEDALSVFDE 219

Query: 192 MPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRL 251
           M   + + W ++IGGFA N     +L LF  MK     G      +  S++        L
Sbjct: 220 MVTGDAIVWNSIIGGFAQNSRSDVALELFKRMKRA---GFIAEQATLTSVLRACTGLALL 276

Query: 252 EEAQNLFDTVPVRDE--ISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQ 309
           E        +   D+  I   +++D Y   G + +A  +F+ M +RD + W+ MISGL Q
Sbjct: 277 ELGMQAHVHIVKYDQDLILNNALVDMYCKCGSLEDALRVFNQMKERDVITWSTMISGLAQ 336

Query: 310 NELFVEATYLFMEMRAHGVPPLNATF-SVLFGAAGATANIDLGRQIHCVLMKTESESDLI 368
           N    EA  LF  M++ G  P   T   VLF  + A    D         MK     D +
Sbjct: 337 NGYSQEALKLFERMKSSGTKPNYITIVGVLFACSHAGLLEDGWYYFRS--MKKLYGIDPV 394

Query: 369 LEN--CLISMYAKCGVIDNAYNIFSNM-VSRDLVSWNSMV 405
            E+  C+I +  K G +D+A  + + M    D V+W +++
Sbjct: 395 REHYGCMIDLLGKAGKLDDAVKLLNEMECEPDAVTWRTLL 434



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 88/353 (24%), Positives = 153/353 (43%), Gaps = 59/353 (16%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQ----------------------- 54
           I  Y K   +++A  LF  MPQRNV+S+  M+S + +                       
Sbjct: 103 INMYVKFNLLNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDNVRPNV 162

Query: 55  ----------NGRLSEARRL----FEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMP 100
                     NG +S+ R L     +E  E +V   +A+I   A  G   +A  +F+EM 
Sbjct: 163 YTYSSVLRSCNG-MSDVRMLHCGIIKEGLESDVFVRSALIDVFAKLGEPEDALSVFDEMV 221

Query: 101 ERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEE 160
             + + WNS++ G  +N   + A ++F  M     I+  A +   +  C  G A++    
Sbjct: 222 TGDAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRAC-TGLALLELGM 280

Query: 161 MEERNVVTW-------TSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFH 213
               ++V +        +++  YC+ G +E+   +F +M  ++V++W+ MI G A NG+ 
Sbjct: 281 QAHVHIVKYDQDLILNNALVDMYCKCGSLEDALRVFNQMKERDVITWSTMISGLAQNGYS 340

Query: 214 KESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEA-------QNLFDTVPVRDE 266
           +E+L LF  MK    +G   N  +   ++      G LE+        + L+   PVR+ 
Sbjct: 341 QEALKLFERMKS---SGTKPNYITIVGVLFACSHAGLLEDGWYYFRSMKKLYGIDPVREH 397

Query: 267 ISWTSMIDGYLSVGQVSNAYYLFHNMP-DRDAVAWTAMISGLVQNELFVEATY 318
             +  MID     G++ +A  L + M  + DAV W  ++         V A Y
Sbjct: 398 --YGCMIDLLGKAGKLDDAVKLLNEMECEPDAVTWRTLLGACRVQRNMVLAEY 448


>gi|297835272|ref|XP_002885518.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331358|gb|EFH61777.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 904

 Score =  282 bits (722), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 175/574 (30%), Positives = 309/574 (53%), Gaps = 20/574 (3%)

Query: 40  RNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEM 99
           +++   N+++  + + G L  AR++F+EM ERNVVSWT+MICG A      +A  LF  M
Sbjct: 166 KDLFVQNSLVHFYAECGELDCARKVFDEMSERNVVSWTSMICGYARREFAKDAVDLFFRM 225

Query: 100 PERNVVSWNSMVVGLIRNG-----ELNEARKVFNSMPIK----NVISWNAMIAGYVECCM 150
                V  NS+ +  + +      +L    KV++ +       N +  +A++  Y++C  
Sbjct: 226 VRDEDVIPNSVTMVCVISACAKLEDLETGEKVYDFIRDSGIEVNDLMISALVDMYMKCNA 285

Query: 151 MGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRM----PRKNVVSWTAMIGG 206
           +  A  LF+E    N+    +M S Y R G  +E   +   M     R + +S  + I  
Sbjct: 286 IDIAKRLFDEYGASNLDLCNAMASNYVRQGLTKEALGVLNLMMDSGIRPDRISMLSAISS 345

Query: 207 FAWNGFHKESLLLFIEMKG-ICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRD 265
            +       ++L      G +  NG       CN++I+ Y++  R + A  +FD +  + 
Sbjct: 346 CS----QLRNILWGKSCHGYVLRNGFESWDNICNALIDMYMKCHRQDTAFRIFDRMSNKT 401

Query: 266 EISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRA 325
            ++W S++ GY+  G+V  A+  F+ MP+++ V+W  +IS LVQ  ++ EA  +F  M++
Sbjct: 402 VVTWNSIVAGYIENGEVDAAWETFNTMPEKNIVSWNTIISALVQENMYEEAIEVFHYMQS 461

Query: 326 HGVPPLNA-TFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVID 384
                ++  T   +  A G    +DL + I+  + K   + D+ L   L+ M+++CG  +
Sbjct: 462 QECVNVDGVTMMSIASACGHLGALDLAKWIYYYIEKNRIQLDVRLGTTLVDMFSRCGDPE 521

Query: 385 NAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACS 444
           +A +IF+++ +RD+ +W + +   +  G     +++F  M+E G  P+ V F+G L+AC 
Sbjct: 522 SAMSIFNSLTNRDVSAWTAAIGAMAMAGNVERAIELFNEMIEQGLKPDGVVFIGALTACC 581

Query: 445 HAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIW 504
           H GLV +G E+FN+M  ++ + P   HY  M++LLGRAG ++EA + +  +P EP+  IW
Sbjct: 582 HGGLVQQGKEIFNSMEKLHGVSPEDVHYGCMVDLLGRAGLLEEALQLIKDMPTEPNDVIW 641

Query: 505 GALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGL 564
            +LL AC   +GN E+A  AA+++  L P    ++V+L N+YA++GR  +  K+R+ M  
Sbjct: 642 NSLLAACRV-QGNVEMAAFAAEKIQVLAPERTGSYVLLSNVYASAGRWNDMAKVRLSMKE 700

Query: 565 KGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
           KG+RK PG S +   G    F SGD+   ++ +I
Sbjct: 701 KGLRKPPGTSVIQIRGKTHEFTSGDESHPEMRKI 734



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 142/574 (24%), Positives = 224/574 (39%), Gaps = 143/574 (24%)

Query: 5   NHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRL 64
           ++ K L V   S +  Y++ G +D A+ +F  M +RNVVS+ +M+ G+ +     +A  L
Sbjct: 163 DYAKDLFVQ-NSLVHFYAECGELDCARKVFDEMSERNVVSWTSMICGYARREFAKDAVDL 221

Query: 65  FEEMPERN-----------VVSWTA-------------------------MICGLADAGR 88
           F  M               V+S  A                         MI  L D   
Sbjct: 222 FFRMVRDEDVIPNSVTMVCVISACAKLEDLETGEKVYDFIRDSGIEVNDLMISALVDMYM 281

Query: 89  VCE----ARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSM-------------- 130
            C     A++LF+E    N+   N+M    +R G   EA  V N M              
Sbjct: 282 KCNAIDIAKRLFDEYGASNLDLCNAMASNYVRQGLTKEALGVLNLMMDSGIRPDRISMLS 341

Query: 131 ------PIKNVI---------------SW----NAMIAGYVECCMMGEAIVLFEEMEERN 165
                  ++N++               SW    NA+I  Y++C     A  +F+ M  + 
Sbjct: 342 AISSCSQLRNILWGKSCHGYVLRNGFESWDNICNALIDMYMKCHRQDTAFRIFDRMSNKT 401

Query: 166 VVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKG 225
           VVTW S+++GY   GEV+  +  F  MP KN+VSW  +I        ++E++ +F  M+ 
Sbjct: 402 VVTWNSIVAGYIENGEVDAAWETFNTMPEKNIVSWNTIISALVQENMYEEAIEVFHYMQS 461

Query: 226 I-CDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISW-----TSMIDGYLSV 279
             C N +   + S  S        G L+ A+ ++  +  ++ I       T+++D +   
Sbjct: 462 QECVNVDGVTMMSIASACG---HLGALDLAKWIYYYIE-KNRIQLDVRLGTTLVDMFSRC 517

Query: 280 GQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLF 339
           G   +A  +F+++ +RD  AWTA I  +        A  LF EM   G+ P    F    
Sbjct: 518 GDPESAMSIFNSLTNRDVSAWTAAIGAMAMAGNVERAIELFNEMIEQGLKPDGVVF---I 574

Query: 340 GAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNM-----V 394
           GA  A  +                                 G++     IF++M     V
Sbjct: 575 GALTACCH--------------------------------GGLVQQGKEIFNSMEKLHGV 602

Query: 395 SRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWE 454
           S + V +  MV      GL  E L++ + M    T PN V +  +L+AC   G V     
Sbjct: 603 SPEDVHYGCMVDLLGRAGLLEEALQLIKDM---PTEPNDVIWNSLLAACRVQGNVEM--- 656

Query: 455 LFNAMFDVYKIQP-GPEH---YVSMINLLGRAGK 484
              A F   KIQ   PE    YV + N+   AG+
Sbjct: 657 ---AAFAAEKIQVLAPERTGSYVLLSNVYASAGR 687



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 78/299 (26%), Positives = 136/299 (45%), Gaps = 53/299 (17%)

Query: 200 WTAMIGGFAWNGFHKESLLLFIEMK---------------GIC----DNGNNCNVQSCNS 240
           + ++I G+A +G  KE++LLFI M                 +C    D GN         
Sbjct: 101 YNSLIRGYASSGLCKEAILLFIRMMNSGISPDKYTFPFGLSVCAKSRDKGNGIQ------ 154

Query: 241 MINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAW 300
            I+G I   +++ A++LF            S++  Y   G++  A  +F  M +R+ V+W
Sbjct: 155 -IHGLII--KMDYAKDLF---------VQNSLVHFYAECGELDCARKVFDEMSERNVVSW 202

Query: 301 TAMISGLVQNELFVEATYLFMEM-RAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLM 359
           T+MI G  + E   +A  LF  M R   V P + T   +  A     +++ G +++  + 
Sbjct: 203 TSMICGYARREFAKDAVDLFFRMVRDEDVIPNSVTMVCVISACAKLEDLETGEKVYDFIR 262

Query: 360 KTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLK 419
            +  E + ++ + L+ MY KC  ID A  +F    + +L   N+M   +   GL  E L 
Sbjct: 263 DSGIEVNDLMISALVDMYMKCNAIDIAKRLFDEYGASNLDLCNAMASNYVRQGLTKEALG 322

Query: 420 VFESMLESGTHPNSVTFLGILSACS-----------HAGLVSRGWE----LFNAMFDVY 463
           V   M++SG  P+ ++ L  +S+CS           H  ++  G+E    + NA+ D+Y
Sbjct: 323 VLNLMMDSGIRPDRISMLSAISSCSQLRNILWGKSCHGYVLRNGFESWDNICNALIDMY 381


>gi|357139833|ref|XP_003571481.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like [Brachypodium distachyon]
          Length = 617

 Score =  282 bits (722), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 170/511 (33%), Positives = 270/511 (52%), Gaps = 26/511 (5%)

Query: 105 VSWNSMVVGLIRNGELN---EARKVFNSMPI-KNVISWNAMIAGYVECC--------MMG 152
           V   S+    IR G+L    E   V ++ P  K    +N ++AGY            ++ 
Sbjct: 9   VGARSLATAAIRRGDLAGAAEPEAVASTTPQRKTTADYNRLLAGYARAARPGGRRDRLLA 68

Query: 153 EAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPR--KNVVSWTAMIGGFAWN 210
           +A  LF+ +   + V++ +++S +  AG+V     LF  MP   +NV SW  M+ G + +
Sbjct: 69  DARHLFDRIPRPDAVSYNTLLSCHFAAGDVRGARDLFAAMPATARNVTSWNTMLSGLSRS 128

Query: 211 GFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDE-ISW 269
           G   E+  +F+ M          N  S N+M++ +   G +  A+  F+  P ++  + W
Sbjct: 129 GAVGEARAVFLAMPAR-------NSISWNAMVSCFAHAGDMCAAEECFEDAPDKENAVLW 181

Query: 270 TSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEM-RAHGV 328
           T+M+ GY+  G V  A   F  MP R  V+W A+++G V+N    +A ++F  M R   V
Sbjct: 182 TAMVSGYMDSGHVEKAMQFFEAMPVRSLVSWNAVVAGYVKNSRAEDALWVFKTMVRDADV 241

Query: 329 PPLNATFS-VLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAY 387
            P  +T S VL G +  +A +  GRQ+H    K      +     L+SMY KCG +D A 
Sbjct: 242 RPNESTLSSVLLGCSNLSA-LGFGRQVHQWCTKLPLSRRVTAGTSLVSMYCKCGDLDGAC 300

Query: 388 NIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAG 447
            +FS M  RD+++WN+M+ G++HHG   E +++FE M   G  PN +TF+ +L+AC H G
Sbjct: 301 KLFSEMRIRDVIAWNAMISGYAHHGDGREAIELFEKMKSQGVEPNWITFVAVLTACIHTG 360

Query: 448 LVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGAL 507
           +   G + F  M +VY I+   +HY  M++LL RAG ++ A   +  +PF+P    +G L
Sbjct: 361 MCDFGMQCFERMQEVYGIEARVDHYSCMVDLLCRAGSLERAVSLIRSMPFQPHPSAYGTL 420

Query: 508 LGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGV 567
           L A    + N E AE AA +L+E +P NA A+V L NIYA + +  +  ++R  M    V
Sbjct: 421 LNASRVYK-NMEFAEFAAGKLIEQNPQNAGAYVQLANIYAVANQWADVSRVRRWMKDNAV 479

Query: 568 RKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
            K PG SW+  NG I +F S D++  Q++ I
Sbjct: 480 VKTPGYSWVEINGVIHVFRSNDRLHPQLSLI 510



 Score =  189 bits (480), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 125/384 (32%), Positives = 199/384 (51%), Gaps = 23/384 (5%)

Query: 29  EAKALFQLMPQRNVVS-YNAMLSGFLQNGR--------LSEARRLFEEMPERNVVSWTAM 79
           E +A+    PQR   + YN +L+G+ +  R        L++AR LF+ +P  + VS+  +
Sbjct: 29  EPEAVASTTPQRKTTADYNRLLAGYARAARPGGRRDRLLADARHLFDRIPRPDAVSYNTL 88

Query: 80  ICGLADAGRVCEARKLFEEMP--ERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVIS 137
           +     AG V  AR LF  MP   RNV SWN+M+ GL R+G + EAR VF +MP +N IS
Sbjct: 89  LSCHFAAGDVRGARDLFAAMPATARNVTSWNTMLSGLSRSGAVGEARAVFLAMPARNSIS 148

Query: 138 WNAMIAGYVECCMMGEAIVLFEEMEER-NVVTWTSMISGYCRAGEVEEGYCLFRRMPRKN 196
           WNAM++ +     M  A   FE+  ++ N V WT+M+SGY  +G VE+    F  MP ++
Sbjct: 149 WNAMVSCFAHAGDMCAAEECFEDAPDKENAVLWTAMVSGYMDSGHVEKAMQFFEAMPVRS 208

Query: 197 VVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMING-----YIRFGRL 251
           +VSW A++ G+  N   +++L +F  M  + D     N  + +S++ G      + FGR 
Sbjct: 209 LVSWNAVVAGYVKNSRAEDALWVFKTM--VRDADVRPNESTLSSVLLGCSNLSALGFGR- 265

Query: 252 EEAQNLFDTVPV-RDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQN 310
            +       +P+ R   + TS++  Y   G +  A  LF  M  RD +AW AMISG   +
Sbjct: 266 -QVHQWCTKLPLSRRVTAGTSLVSMYCKCGDLDGACKLFSEMRIRDVIAWNAMISGYAHH 324

Query: 311 ELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTES-ESDLIL 369
               EA  LF +M++ GV P   TF  +  A   T   D G Q    + +    E+ +  
Sbjct: 325 GDGREAIELFEKMKSQGVEPNWITFVAVLTACIHTGMCDFGMQCFERMQEVYGIEARVDH 384

Query: 370 ENCLISMYAKCGVIDNAYNIFSNM 393
            +C++ +  + G ++ A ++  +M
Sbjct: 385 YSCMVDLLCRAGSLERAVSLIRSM 408



 Score =  156 bits (394), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 104/362 (28%), Positives = 170/362 (46%), Gaps = 85/362 (23%)

Query: 7   PKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQ--RNVVSYNAMLSGFLQNGRLSEARRL 64
           P+   V   + ++ +   G +  A+ LF  MP   RNV S+N MLSG  ++G + EAR +
Sbjct: 78  PRPDAVSYNTLLSCHFAAGDVRGARDLFAAMPATARNVTSWNTMLSGLSRSGAVGEARAV 137

Query: 65  FEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPER-NVVSWNSMVVGLIRNGELNEA 123
           F  MP RN +SW AM+   A AG +C A + FE+ P++ N V W +MV G + +G + +A
Sbjct: 138 FLAMPARNSISWNAMVSCFAHAGDMCAAEECFEDAPDKENAVLWTAMVSGYMDSGHVEKA 197

Query: 124 RKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEE-------------------- 163
            + F +MP+++++SWNA++AGYV+     +A+ +F+ M                      
Sbjct: 198 MQFFEAMPVRSLVSWNAVVAGYVKNSRAEDALWVFKTMVRDADVRPNESTLSSVLLGCSN 257

Query: 164 --------------------RNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAM 203
                               R V   TS++S YC+ G+++    LF  M  ++V++W AM
Sbjct: 258 LSALGFGRQVHQWCTKLPLSRRVTAGTSLVSMYCKCGDLDGACKLFSEMRIRDVIAWNAM 317

Query: 204 IGGFAWNGFHKESLLLFIEMK---------------------GICDNGNNC--------- 233
           I G+A +G  +E++ LF +MK                     G+CD G  C         
Sbjct: 318 ISGYAHHGDGREAIELFEKMKSQGVEPNWITFVAVLTACIHTGMCDFGMQCFERMQEVYG 377

Query: 234 ---NVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFH 290
               V   + M++   R G LE A +L  ++P +   S         + G + NA  ++ 
Sbjct: 378 IEARVDHYSCMVDLLCRAGSLERAVSLIRSMPFQPHPS---------AYGTLLNASRVYK 428

Query: 291 NM 292
           NM
Sbjct: 429 NM 430


>gi|30693150|ref|NP_190486.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75222188|sp|Q5G1T1.1|PP272_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g49170, chloroplastic; AltName: Full=Protein EMBRYO
           DEFECTIVE 2261; Flags: Precursor
 gi|58013018|gb|AAW62962.1| embryo-defective 2261 [Arabidopsis thaliana]
 gi|58013020|gb|AAW62963.1| embryo-defective 2261 [Arabidopsis thaliana]
 gi|332644986|gb|AEE78507.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 850

 Score =  282 bits (722), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 198/651 (30%), Positives = 327/651 (50%), Gaps = 65/651 (9%)

Query: 7   PKSLVVHLTSSITKYSKRGFIDEAKALFQLMP---QRNVVSYNAMLSGFLQNGRLSEARR 63
           P S++ +  S I+ YSK G   +A+ +F+ M    +R+VVS++AM++ +  NGR  +A +
Sbjct: 95  PDSVLYN--SLISLYSKSGDSAKAEDVFETMRRFGKRDVVSWSAMMACYGNNGRELDAIK 152

Query: 64  LFEEMPERNVVS----WTAMI--CGLAD---AGRVC------------------------ 90
           +F E  E  +V     +TA+I  C  +D    GRV                         
Sbjct: 153 VFVEFLELGLVPNDYCYTAVIRACSNSDFVGVGRVTLGFLMKTGHFESDVCVGCSLIDMF 212

Query: 91  --------EARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMI 142
                    A K+F++M E NVV+W  M+   ++ G   EA + F  M +    S    +
Sbjct: 213 VKGENSFENAYKVFDKMSELNVVTWTLMITRCMQMGFPREAIRFFLDMVLSGFESDKFTL 272

Query: 143 AGYVECCMMGEAIVLFEEMEERNVVTW------TSMISGYCRA---GEVEEGYCLFRRMP 193
           +     C   E + L +++    + +        S++  Y +    G V++   +F RM 
Sbjct: 273 SSVFSACAELENLSLGKQLHSWAIRSGLVDDVECSLVDMYAKCSADGSVDDCRKVFDRME 332

Query: 194 RKNVVSWTAMIGGFAWN-GFHKESLLLFIEM--KGICDNGN---NCNVQSCNSMINGYIR 247
             +V+SWTA+I G+  N     E++ LF EM  +G  +  +   +   ++C ++ +   R
Sbjct: 333 DHSVMSWTALITGYMKNCNLATEAINLFSEMITQGHVEPNHFTFSSAFKACGNLSDP--R 390

Query: 248 FGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGL 307
            G+    Q     +     ++  S+I  ++   ++ +A   F ++ +++ V++   + G 
Sbjct: 391 VGKQVLGQAFKRGLASNSSVA-NSVISMFVKSDRMEDAQRAFESLSEKNLVSYNTFLDGT 449

Query: 308 VQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDL 367
            +N  F +A  L  E+    +     TF+ L        +I  G QIH  ++K     + 
Sbjct: 450 CRNLNFEQAFKLLSEITERELGVSAFTFASLLSGVANVGSIRKGEQIHSQVVKLGLSCNQ 509

Query: 368 ILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLES 427
            + N LISMY+KCG ID A  +F+ M +R+++SW SM+ GF+ HG A   L+ F  M+E 
Sbjct: 510 PVCNALISMYSKCGSIDTASRVFNFMENRNVISWTSMITGFAKHGFAIRVLETFNQMIEE 569

Query: 428 GTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKE 487
           G  PN VT++ ILSACSH GLVS GW  FN+M++ +KI+P  EHY  M++LL RAG + +
Sbjct: 570 GVKPNEVTYVAILSACSHVGLVSEGWRHFNSMYEDHKIKPKMEHYACMVDLLCRAGLLTD 629

Query: 488 AEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYA 547
           A EF+  +PF+ D  +W   LGAC     N E+ + AA+++LELDP    A++ L NIYA
Sbjct: 630 AFEFINTMPFQADVLVWRTFLGACRV-HSNTELGKLAARKILELDPNEPAAYIQLSNIYA 688

Query: 548 ASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
            +G+  E  ++R  M  + + K  GCSW+     I  F  GD       +I
Sbjct: 689 CAGKWEESTEMRRKMKERNLVKEGGCSWIEVGDKIHKFYVGDTAHPNAHQI 739



 Score =  112 bits (279), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 81/294 (27%), Positives = 143/294 (48%), Gaps = 17/294 (5%)

Query: 163 ERNVVTWTSMISGYCRAGE---VEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLL 219
           E + V + S+IS Y ++G+    E+ +   RR  +++VVSW+AM+  +  NG   +++ +
Sbjct: 94  EPDSVLYNSLISLYSKSGDSAKAEDVFETMRRFGKRDVVSWSAMMACYGNNGRELDAIKV 153

Query: 220 FIEMK--GICDNGN--NCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDG 275
           F+E    G+  N       +++C++  + ++  GR+     +       D     S+ID 
Sbjct: 154 FVEFLELGLVPNDYCYTAVIRACSN--SDFVGVGRVTLGFLMKTGHFESDVCVGCSLIDM 211

Query: 276 YLS-VGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNAT 334
           ++       NAY +F  M + + V WT MI+  +Q     EA   F++M   G      T
Sbjct: 212 FVKGENSFENAYKVFDKMSELNVVTWTLMITRCMQMGFPREAIRFFLDMVLSGFESDKFT 271

Query: 335 FSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKC---GVIDNAYNIFS 391
            S +F A     N+ LG+Q+H   +++    D  +E  L+ MYAKC   G +D+   +F 
Sbjct: 272 LSSVFSACAELENLSLGKQLHSWAIRSGLVDD--VECSLVDMYAKCSADGSVDDCRKVFD 329

Query: 392 NMVSRDLVSWNSMVMGFSHH-GLANETLKVFESMLESG-THPNSVTFLGILSAC 443
            M    ++SW +++ G+  +  LA E + +F  M+  G   PN  TF     AC
Sbjct: 330 RMEDHSVMSWTALITGYMKNCNLATEAINLFSEMITQGHVEPNHFTFSSAFKAC 383



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 88/356 (24%), Positives = 151/356 (42%), Gaps = 19/356 (5%)

Query: 246 IRFGRLEEAQNL-FDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMP---DRDAVAWT 301
            R G+L  A+ + FD  P  D + + S+I  Y   G  + A  +F  M     RD V+W+
Sbjct: 78  FRLGKLVHARLIEFDIEP--DSVLYNSLISLYSKSGDSAKAEDVFETMRRFGKRDVVSWS 135

Query: 302 AMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKT 361
           AM++    N   ++A  +F+E    G+ P +  ++ +  A   +  + +GR     LMKT
Sbjct: 136 AMMACYGNNGRELDAIKVFVEFLELGLVPNDYCYTAVIRACSNSDFVGVGRVTLGFLMKT 195

Query: 362 -ESESDLILENCLISMYAKC-GVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLK 419
              ESD+ +   LI M+ K     +NAY +F  M   ++V+W  M+      G   E ++
Sbjct: 196 GHFESDVCVGCSLIDMFVKGENSFENAYKVFDKMSELNVVTWTLMITRCMQMGFPREAIR 255

Query: 420 VFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLL 479
            F  M+ SG   +  T   + SAC+    +S G +L +       +       V M    
Sbjct: 256 FFLDMVLSGFESDKFTLSSVFSACAELENLSLGKQLHSWAIRSGLVDDVECSLVDMYAKC 315

Query: 480 GRAGKIKEAEEFVLRLPFEPDHRI--WGALLGACGFCEGNAEIAEHAAKRLLELDPLN-- 535
              G + +  +   R+    DH +  W AL+   G+ + N  +A  A     E+      
Sbjct: 316 SADGSVDDCRKVFDRM---EDHSVMSWTALI--TGYMK-NCNLATEAINLFSEMITQGHV 369

Query: 536 APAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKI 591
            P H    + + A G   +    +  +G    R +   S +  N  I MF+  D++
Sbjct: 370 EPNHFTFSSAFKACGNLSDPRVGKQVLGQAFKRGLASNSSVA-NSVISMFVKSDRM 424



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 44/134 (32%), Positives = 74/134 (55%), Gaps = 4/134 (2%)

Query: 323 MRAHGVPPLNA-TFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCG 381
           M   G+ P+++ TFS L  +     +  LG+ +H  L++ + E D +L N LIS+Y+K G
Sbjct: 52  MARDGIRPMDSVTFSSLLKSCIRARDFRLGKLVHARLIEFDIEPDSVLYNSLISLYSKSG 111

Query: 382 VIDNAYNIFSNMV---SRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLG 438
               A ++F  M     RD+VSW++M+  + ++G   + +KVF   LE G  PN   +  
Sbjct: 112 DSAKAEDVFETMRRFGKRDVVSWSAMMACYGNNGRELDAIKVFVEFLELGLVPNDYCYTA 171

Query: 439 ILSACSHAGLVSRG 452
           ++ ACS++  V  G
Sbjct: 172 VIRACSNSDFVGVG 185


>gi|115465982|ref|NP_001056590.1| Os06g0112000 [Oryza sativa Japonica Group]
 gi|7363286|dbj|BAA93030.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113594630|dbj|BAF18504.1| Os06g0112000 [Oryza sativa Japonica Group]
 gi|215737111|dbj|BAG96040.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 734

 Score =  282 bits (721), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 170/521 (32%), Positives = 261/521 (50%), Gaps = 48/521 (9%)

Query: 122 EARKVFNSMPIKNVISWNAMIAGYVE---CCMMGEAIVLFEEME---------------- 162
           +AR+VF+ MP+++ ++WNA++AGY       M  E +V  +E E                
Sbjct: 112 DARRVFDRMPVRDRVAWNALVAGYARNGLARMAMEMVVRMQEEEGERPDSITLVSVLPAC 171

Query: 163 ---------------------ERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWT 201
                                E  V   T+++  YC+ G++     +F  MP KN VSW 
Sbjct: 172 ANARALAACREAHAFAIRSGLEELVNVATAILDAYCKCGDIRAARVVFDWMPTKNSVSWN 231

Query: 202 AMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEA---QNLF 258
           AMI G+A NG  +E+L LF  M    + G +    S  + +      G L+E      L 
Sbjct: 232 AMIDGYAQNGDSREALALFNRM---VEEGVDVTDVSVLAALQACGELGCLDEGMRVHELL 288

Query: 259 DTVPVRDEIS-WTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEAT 317
             + +   +S   ++I  Y    +V  A ++F  +  R  V+W AMI G  QN    +A 
Sbjct: 289 VRIGLDSNVSVMNALITMYSKCKRVDLASHVFDELDRRTQVSWNAMILGCAQNGCSEDAV 348

Query: 318 YLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMY 377
            LF  M+   V P + T   +  A    ++    R IH   ++   + D+ +   LI MY
Sbjct: 349 RLFTRMQLENVKPDSFTLVSVIPALADISDPLQARWIHGYSIRLHLDQDVYVLTALIDMY 408

Query: 378 AKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFL 437
           AKCG ++ A  +F++   R +++WN+M+ G+  HG     +++FE M   G  PN  TFL
Sbjct: 409 AKCGRVNIARILFNSARERHVITWNAMIHGYGSHGFGKAAVELFEEMKSIGIVPNETTFL 468

Query: 438 GILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPF 497
            +LSACSHAGLV  G E F +M + Y ++PG EHY +M++LLGRAGK+ EA  F+ ++P 
Sbjct: 469 SVLSACSHAGLVDEGREYFTSMKEDYGLEPGMEHYGTMVDLLGRAGKLDEAWAFIQKMPM 528

Query: 498 EPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHK 557
           +P   ++GA+LGAC     N E+AE +A+++ EL P     HV+L NIYA +    +  +
Sbjct: 529 DPGLSVYGAMLGACKL-HKNVELAEESAQKIFELGPQEGVYHVLLANIYANASMWKDVAR 587

Query: 558 LRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
           +R  M   G++K PG S +     I  F SG     Q  EI
Sbjct: 588 VRTAMEKNGLQKTPGWSIIQLKNEIHTFYSGSTNHQQAKEI 628



 Score =  118 bits (295), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 133/560 (23%), Positives = 228/560 (40%), Gaps = 101/560 (18%)

Query: 21  YSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEAR----RLFEEMPER----N 72
           Y+K     +A+ +F  MP R+ V++NA+++G+ +NG    A     R+ EE  ER     
Sbjct: 104 YAKCRRPADARRVFDRMPVRDRVAWNALVAGYARNGLARMAMEMVVRMQEEEGERPDSIT 163

Query: 73  VVS--------------------------------WTAMICGLADAGRVCEARKLFEEMP 100
           +VS                                 TA++      G +  AR +F+ MP
Sbjct: 164 LVSVLPACANARALAACREAHAFAIRSGLEELVNVATAILDAYCKCGDIRAARVVFDWMP 223

Query: 101 ERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEE 160
            +N VSWN+M+ G  +NG+  EA  +FN M  + V   +  +   ++ C  GE   L E 
Sbjct: 224 TKNSVSWNAMIDGYAQNGDSREALALFNRMVEEGVDVTDVSVLAALQAC--GELGCLDEG 281

Query: 161 ME----------ERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWN 210
           M           + NV    ++I+ Y +   V+    +F  + R+  VSW AMI G A N
Sbjct: 282 MRVHELLVRIGLDSNVSVMNALITMYSKCKRVDLASHVFDELDRRTQVSWNAMILGCAQN 341

Query: 211 GFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVR------ 264
           G  ++++ LF  M            Q  N   + +     +    ++ D +  R      
Sbjct: 342 GCSEDAVRLFTRM------------QLENVKPDSFTLVSVIPALADISDPLQARWIHGYS 389

Query: 265 -------DEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEAT 317
                  D    T++ID Y   G+V+ A  LF++  +R  + W AMI G   +     A 
Sbjct: 390 IRLHLDQDVYVLTALIDMYAKCGRVNIARILFNSARERHVITWNAMIHGYGSHGFGKAAV 449

Query: 318 YLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILEN--CLIS 375
            LF EM++ G+ P   TF  +  A      +D GR+ +   MK +   +  +E+   ++ 
Sbjct: 450 ELFEEMKSIGIVPNETTFLSVLSACSHAGLVDEGRE-YFTSMKEDYGLEPGMEHYGTMVD 508

Query: 376 MYAKCGVIDNAYNIFSNM-VSRDLVSWNSMVMGFSHHG---LANETL-KVFESMLESGTH 430
           +  + G +D A+     M +   L  + +M+     H    LA E+  K+FE   + G +
Sbjct: 509 LLGRAGKLDEAWAFIQKMPMDPGLSVYGAMLGACKLHKNVELAEESAQKIFELGPQEGVY 568

Query: 431 PNSVTFLGILSACSHAGLVSR--------------GWELFNAMFDVYKIQPGPEHYVSMI 476
              V    I +  S    V+R              GW +     +++    G  ++    
Sbjct: 569 --HVLLANIYANASMWKDVARVRTAMEKNGLQKTPGWSIIQLKNEIHTFYSGSTNHQQAK 626

Query: 477 NLLGRAGKIKEAEEFVLRLP 496
            +  R  K+ E  + V  +P
Sbjct: 627 EIYSRLAKLIEEIKAVGYVP 646



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 115/455 (25%), Positives = 191/455 (41%), Gaps = 76/455 (16%)

Query: 4   RNHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARR 63
           R+  + LV   T+ +  Y K G I  A+ +F  MP +N VS+NAM+ G+ QNG   EA  
Sbjct: 189 RSGLEELVNVATAILDAYCKCGDIRAARVVFDWMPTKNSVSWNAMIDGYAQNGDSREALA 248

Query: 64  LFEEMPER---------------------------------------NVVSWTAMICGLA 84
           LF  M E                                        NV    A+I   +
Sbjct: 249 LFNRMVEEGVDVTDVSVLAALQACGELGCLDEGMRVHELLVRIGLDSNVSVMNALITMYS 308

Query: 85  DAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAG 144
              RV  A  +F+E+  R  VSWN+M++G  +NG   +A ++F  M ++NV   +  +  
Sbjct: 309 KCKRVDLASHVFDELDRRTQVSWNAMILGCAQNGCSEDAVRLFTRMQLENVKPDSFTLVS 368

Query: 145 YVECC-----------MMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMP 193
            +              + G +I L     +++V   T++I  Y + G V     LF    
Sbjct: 369 VIPALADISDPLQARWIHGYSIRLH---LDQDVYVLTALIDMYAKCGRVNIARILFNSAR 425

Query: 194 RKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEE 253
            ++V++W AMI G+  +GF K ++ LF EMK I   G   N  +  S+++     G ++E
Sbjct: 426 ERHVITWNAMIHGYGSHGFGKAAVELFEEMKSI---GIVPNETTFLSVLSACSHAGLVDE 482

Query: 254 AQNLFDTVPVRDEIS-----WTSMIDGYLSVGQVSNAYYLFHNMP-DRDAVAWTAMISG- 306
            +  F ++     +      + +M+D     G++  A+     MP D     + AM+   
Sbjct: 483 GREYFTSMKEDYGLEPGMEHYGTMVDLLGRAGKLDEAWAFIQKMPMDPGLSVYGAMLGAC 542

Query: 307 -LVQN-ELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANI--DLGRQIHCV----L 358
            L +N EL  E+     E+      P    + VL     A A++  D+ R    +    L
Sbjct: 543 KLHKNVELAEESAQKIFEL-----GPQEGVYHVLLANIYANASMWKDVARVRTAMEKNGL 597

Query: 359 MKTESESDLILENCLISMYAKCGVIDNAYNIFSNM 393
            KT   S + L+N + + Y+       A  I+S +
Sbjct: 598 QKTPGWSIIQLKNEIHTFYSGSTNHQQAKEIYSRL 632



 Score = 79.3 bits (194), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 40/122 (32%), Positives = 66/122 (54%), Gaps = 1/122 (0%)

Query: 320 FMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAK 379
           F+ M + G PP+  TF+ L     A  ++  GR +H  L     +S+ +    L +MYAK
Sbjct: 47  FVAMSSAGAPPVLRTFTSLLKLCAARGDLATGRAVHAQLAARGIDSEALAATALANMYAK 106

Query: 380 CGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESML-ESGTHPNSVTFLG 438
           C    +A  +F  M  RD V+WN++V G++ +GLA   +++   M  E G  P+S+T + 
Sbjct: 107 CRRPADARRVFDRMPVRDRVAWNALVAGYARNGLARMAMEMVVRMQEEEGERPDSITLVS 166

Query: 439 IL 440
           +L
Sbjct: 167 VL 168



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 52/173 (30%), Positives = 87/173 (50%), Gaps = 14/173 (8%)

Query: 2   SERNHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEA 61
           S R H    V  LT+ I  Y+K G ++ A+ LF    +R+V+++NAM+ G+  +G    A
Sbjct: 389 SIRLHLDQDVYVLTALIDMYAKCGRVNIARILFNSARERHVITWNAMIHGYGSHGFGKAA 448

Query: 62  RRLFEEMPERNVV----SWTAMICGLADAGRVCEARKLFEEMPER-----NVVSWNSMVV 112
             LFEEM    +V    ++ +++   + AG V E R+ F  M E       +  + +MV 
Sbjct: 449 VELFEEMKSIGIVPNETTFLSVLSACSHAGLVDEGREYFTSMKEDYGLEPGMEHYGTMVD 508

Query: 113 GLIRNGELNEARKVFNSMPIKNVIS-WNAMIAGYVECCMMGEAIVLFEEMEER 164
            L R G+L+EA      MP+   +S + AM+      C + + + L EE  ++
Sbjct: 509 LLGRAGKLDEAWAFIQKMPMDPGLSVYGAMLGA----CKLHKNVELAEESAQK 557


>gi|302821224|ref|XP_002992276.1| hypothetical protein SELMODRAFT_135000 [Selaginella moellendorffii]
 gi|300139926|gb|EFJ06657.1| hypothetical protein SELMODRAFT_135000 [Selaginella moellendorffii]
          Length = 545

 Score =  282 bits (721), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 165/509 (32%), Positives = 268/509 (52%), Gaps = 24/509 (4%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWT 77
           I+ +++ G ++ AK+LF  M  R+VVS+N++L  + ++G  SEAR +F +MP  +  SW+
Sbjct: 12  ISGFARNGHLENAKSLFDAMFDRDVVSWNSILGAYSRHGATSEAREVFGKMPATDGFSWS 71

Query: 78  AMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVIS 137
           +M+   A      E  +LF+++P R ++SW SM+    R+G L E + VF   P  +VI 
Sbjct: 72  SMLSAFAHTASRDEVGELFDKLPVRELISWTSMLHSCARDGRLEEMQAVFWRFPCWDVIC 131

Query: 138 WNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRA----GEVEEGYCLFRRMP 193
           WN +I        + +A+V F +M  R+ VTW  ++  +CRA    G+VEE   +F  M 
Sbjct: 132 WNEVITACAREGHLSDALVAFNQMPGRSSVTWNLLLQAFCRASQPDGQVEEARRVFDAML 191

Query: 194 RKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYI---RFGR 250
            +N VSW +M+ G+   G   E+ LLF  M          +V S N+M+  +        
Sbjct: 192 HRNTVSWNSMVAGYVRAGRVAEAKLLFDAMPDTAKR----DVVSWNTMLPAFTVTEDAAV 247

Query: 251 LEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTA-----MIS 305
           LE  +  F  +P   + SW +M+  Y   G    A  LF  MP++D+ +W+A     ++S
Sbjct: 248 LELVEECFRRMPFTSQASWNAMLHAYACGGVTQRAEQLFERMPEKDSASWSALASARLLS 307

Query: 306 GLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTES-- 363
           G  Q+     A  +   M   G  P   ++     A G  +++  GR +H  ++  +   
Sbjct: 308 GKCQS-----AASVVGLMDLDGCKPDAVSYISALEACGMASDLAQGRILHAEIVAADDPA 362

Query: 364 -ESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFE 422
            +    +   L+SMY++C  +  A   F  M S++LVSW +MV   + +G ++     F 
Sbjct: 363 LQDGGKVATALVSMYSRCAALGEAVAAFDGMSSKNLVSWTAMVAALAQNGFSSLARLAFW 422

Query: 423 SMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRA 482
            M  +G  P+S++F+ ILSAC+HAG V  GW  F +M   Y IQPG +HY  +++LLGRA
Sbjct: 423 RMELNGFTPDSISFISILSACNHAGSVELGWSHFVSMVGDYGIQPGLDHYACVVDLLGRA 482

Query: 483 GKIKEAEEFVLRLPFEPDHRIWGALLGAC 511
           G +++A E +  +PF P      +LL AC
Sbjct: 483 GNLEDAHELMDAMPFIPGPDSRTSLLSAC 511



 Score =  139 bits (351), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 106/408 (25%), Positives = 199/408 (48%), Gaps = 27/408 (6%)

Query: 7   PKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFE 66
           P   ++  TS +   ++ G ++E +A+F   P  +V+ +N +++   + G LS+A   F 
Sbjct: 94  PVRELISWTSMLHSCARDGRLEEMQAVFWRFPCWDVICWNEVITACAREGHLSDALVAFN 153

Query: 67  EMPERNVVSWTAMICGLADA----GRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNE 122
           +MP R+ V+W  ++     A    G+V EAR++F+ M  RN VSWNSMV G +R G + E
Sbjct: 154 QMPGRSSVTWNLLLQAFCRASQPDGQVEEARRVFDAMLHRNTVSWNSMVAGYVRAGRVAE 213

Query: 123 ARKVFNSMP---IKNVISWNAMIAGYVECCMMGEAIVL------FEEMEERNVVTWTSMI 173
           A+ +F++MP    ++V+SWN M+  +    +  +A VL      F  M   +  +W +M+
Sbjct: 214 AKLLFDAMPDTAKRDVVSWNTMLPAFT---VTEDAAVLELVEECFRRMPFTSQASWNAML 270

Query: 174 SGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKE--SLLLFIEMKGICDNGN 231
             Y   G  +    LF RMP K+  SW+A+      +G  +   S++  +++ G   +  
Sbjct: 271 HAYACGGVTQRAEQLFERMPEKDSASWSALASARLLSGKCQSAASVVGLMDLDGCKPDAV 330

Query: 232 N--CNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEIS--WTSMIDGYLSVGQVSNAYY 287
           +    +++C   +   +  GR+  A+ +    P   +     T+++  Y     +  A  
Sbjct: 331 SYISALEACG--MASDLAQGRILHAEIVAADDPALQDGGKVATALVSMYSRCAALGEAVA 388

Query: 288 LFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATAN 347
            F  M  ++ V+WTAM++ L QN     A   F  M  +G  P + +F  +  A     +
Sbjct: 389 AFDGMSSKNLVSWTAMVAALAQNGFSSLARLAFWRMELNGFTPDSISFISILSACNHAGS 448

Query: 348 IDLGRQIHCVLMKTESESDLILEN--CLISMYAKCGVIDNAYNIFSNM 393
           ++LG   H V M  +      L++  C++ +  + G +++A+ +   M
Sbjct: 449 VELGWS-HFVSMVGDYGIQPGLDHYACVVDLLGRAGNLEDAHELMDAM 495


>gi|242096978|ref|XP_002438979.1| hypothetical protein SORBIDRAFT_10g029325 [Sorghum bicolor]
 gi|241917202|gb|EER90346.1| hypothetical protein SORBIDRAFT_10g029325 [Sorghum bicolor]
          Length = 723

 Score =  282 bits (721), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 173/529 (32%), Positives = 271/529 (51%), Gaps = 15/529 (2%)

Query: 81  CGLADAG----RVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVI 136
           C  A AG    R+  A  L   +P    +  N ++      G  ++AR+ F+ +P+K+ +
Sbjct: 111 CCAAGAGAGLCRMLHAACLRTMLPSAARIVANPLIHMYASLGLTDDARRAFDEVPVKDAV 170

Query: 137 SWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKN 196
            W  +I G V   ++ EA  L  +  ERNVV+WTS+I+GY RAG   +    F  M    
Sbjct: 171 VWATVIGGLVRWGLLDEARRLLVQAPERNVVSWTSLIAGYSRAGRPADAVYCFNCMLSDG 230

Query: 197 V-VSWTAMIGGFAWNGFHKE----SLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRL 251
           V     A+IG  +     K      LL  +  K      +   V    ++I+ Y + G +
Sbjct: 231 VEPDEVAVIGALSACSKLKNLEFGRLLHLLVGKKRIQMTDKLVV----TLIDMYAKCGDI 286

Query: 252 EEAQNLFDTVPV-RDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQN 310
            +AQ +FD V   +    W  +IDGY  +G V  A  LF  M  RD + + +MI+G + +
Sbjct: 287 AQAQAVFDAVGRGQKPEPWNVIIDGYCKLGHVDIARSLFDQMGARDVITFNSMITGYIHS 346

Query: 311 ELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILE 370
               +A  LFM++R HG+   N T   L  A  +   +  GR +H  + +   E D+ L 
Sbjct: 347 GRLRDALQLFMQLRRHGMRADNFTVVSLLTACASLGALPQGRALHASIEQRIVEEDVYLV 406

Query: 371 NCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTH 430
             L+ MY KCG +D A  +F  M  RD+ +W++M+ G + +G+  + L+ F  M   G  
Sbjct: 407 TALVDMYMKCGRVDEATAVFHRMGERDVHTWSAMIAGLAFNGMGMDALESFCQMKRDGFQ 466

Query: 431 PNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEE 490
           P SVT++ +L+ACSH+ L++ G + FN M  ++K+ P  EHY  MI+LL R+G + EA  
Sbjct: 467 PTSVTYIAVLTACSHSSLLNEGRQHFNEMRSLHKLHPQIEHYGCMIDLLARSGLLDEAMH 526

Query: 491 FVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASG 550
            V  +P +P+  IW ++L AC     N ++A HAA+ LL+L P     +V L NIY  S 
Sbjct: 527 LVQTMPMQPNAVIWASILSACRV-HKNIDLARHAAEHLLKLAPEEDAVYVQLYNIYIDSR 585

Query: 551 RHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEIL 599
           + VE  ++RM M  +GV+K  G S +   G +  F+  D+      EI+
Sbjct: 586 QWVEAKRIRMLMEEQGVKKTAGYSSITVAGQVHKFVVNDQSHPWTLEII 634


>gi|125529196|gb|EAY77310.1| hypothetical protein OsI_05285 [Oryza sativa Indica Group]
          Length = 785

 Score =  282 bits (721), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 191/633 (30%), Positives = 310/633 (48%), Gaps = 65/633 (10%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNG-------RLSEARRLFEEMPE 70
           +  Y + G    A+ L   MP+RN VS+N ++  + + G        L+ ARR   ++  
Sbjct: 50  LAAYCRLGGPLPARRLLDEMPRRNAVSFNLLIDAYSREGLAPLSLETLARARRAGVDVDR 109

Query: 71  RN------------------VVSWTAMICGLADA--------------GRVCEARKLFEE 98
            +                   V   A++ GL+                G + EAR++F+ 
Sbjct: 110 FSYAAALAACSRAGHLRAGRAVHALAILDGLSSGVFVSNSLVSMYSKCGEMGEARRVFDV 169

Query: 99  MPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYV-ECCM------- 150
             ER+ VSWNS+V G +R G   E  +VF +M  +  +  N+   G V +CC        
Sbjct: 170 AEERDDVSWNSLVSGYVRAGAREEMVRVF-AMMRRGGMGLNSFALGSVIKCCSGRGDGTM 228

Query: 151 -MGEAI--VLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGF 207
            + EA+   + +   + +V   ++MI  Y + G + E   LFR +   NVV +  MI GF
Sbjct: 229 DIAEAVHGCVIKAGLDSDVFLVSAMIDMYAKKGALVEAAALFRSVQEPNVVMFNTMIAGF 288

Query: 208 AWNG------FHKESLLLFIEMKG----ICDNGNNCNVQSCNSMINGYIRFGRLEEAQNL 257
                        E+L L+ E++       +   +  +++CN  + GY+ FG+    Q +
Sbjct: 289 CRTETVIGKEVASEALTLYSEVQSRGMQPTEFTFSSVLRACN--LAGYLEFGKQIHGQVI 346

Query: 258 FDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEAT 317
             T    D+   +++ID Y + G + + +  F + P  D V WTAM+SG VQNEL  +A 
Sbjct: 347 KYTFQ-EDDFIGSALIDLYFNSGCMEDGFRCFRSSPKHDIVTWTAMVSGCVQNELHEKAL 405

Query: 318 YLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMY 377
            LF E    G+ P   T S +  A  + A    G QI C   K+  +   ++ N  + MY
Sbjct: 406 SLFHESLGAGLKPDLFTISSVMNACASLAVARAGEQIQCFATKSGFDRFTVMGNSCVHMY 465

Query: 378 AKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFL 437
           A+ G +D A   F  M S D+VSW++++   + HG A + L  F+ M+++   PN +TFL
Sbjct: 466 ARSGDVDAATRRFQEMESHDVVSWSAVISCHAQHGCARDALHFFDEMVDAKVVPNEITFL 525

Query: 438 GILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPF 497
           G+L+ACSH GLV  G   +  M   Y + P  +H   +++LLGRAG++ +AE F+    F
Sbjct: 526 GVLTACSHGGLVDEGLRYYETMNKDYGLSPTIKHCTCVVDLLGRAGRLADAEAFISNGIF 585

Query: 498 EPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHK 557
             D  IW +LL +C     + E  +  A R++EL+P ++ ++V+L N+Y  +G      K
Sbjct: 586 HADPVIWRSLLASCRI-HRDLERGQLVANRIMELEPTSSASYVILYNMYLDAGELSLASK 644

Query: 558 LRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDK 590
            R  M  +GV+K PG SW+    G+  F++GDK
Sbjct: 645 TRDLMKQRGVKKEPGLSWIELKCGVHSFVAGDK 677



 Score =  149 bits (375), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 126/510 (24%), Positives = 227/510 (44%), Gaps = 65/510 (12%)

Query: 38  PQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAG-------RVC 90
           P  ++   N +L+ + + G    ARRL +EMP RN VS+  +I   +  G        + 
Sbjct: 39  PAASLFLRNTLLAAYCRLGGPLPARRLLDEMPRRNAVSFNLLIDAYSREGLAPLSLETLA 98

Query: 91  EARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVIS-----WNAMIAGY 145
            AR+   ++   +  S+ + +    R G L   R V +++ I + +S      N++++ Y
Sbjct: 99  RARRAGVDV---DRFSYAAALAACSRAGHLRAGRAV-HALAILDGLSSGVFVSNSLVSMY 154

Query: 146 VECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIG 205
            +C  MGEA  +F+  EER+ V+W S++SGY RAG  EE   +F  M R          G
Sbjct: 155 SKCGEMGEARRVFDVAEERDDVSWNSLVSGYVRAGAREEMVRVFAMMRR----------G 204

Query: 206 GFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRD 265
           G   N F   S++        C +G           ++G +    L+            D
Sbjct: 205 GMGLNSFALGSVIK-------CCSGRGDGTMDIAEAVHGCVIKAGLDS-----------D 246

Query: 266 EISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFV------EATYL 319
               ++MID Y   G +  A  LF ++ + + V +  MI+G  + E  +      EA  L
Sbjct: 247 VFLVSAMIDMYAKKGALVEAAALFRSVQEPNVVMFNTMIAGFCRTETVIGKEVASEALTL 306

Query: 320 FMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAK 379
           + E+++ G+ P   TFS +  A      ++ G+QIH  ++K   + D  + + LI +Y  
Sbjct: 307 YSEVQSRGMQPTEFTFSSVLRACNLAGYLEFGKQIHGQVIKYTFQEDDFIGSALIDLYFN 366

Query: 380 CGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGI 439
            G +++ +  F +    D+V+W +MV G   + L  + L +F   L +G  P+  T   +
Sbjct: 367 SGCMEDGFRCFRSSPKHDIVTWTAMVSGCVQNELHEKALSLFHESLGAGLKPDLFTISSV 426

Query: 440 LSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSM----INLLGRAGKIKEAEEFVLRL 495
           ++AC+   +   G ++       +  + G + +  M    +++  R+G +  A     R 
Sbjct: 427 MNACASLAVARAGEQI-----QCFATKSGFDRFTVMGNSCVHMYARSGDVDAATR---RF 478

Query: 496 PFEPDHRI--WGALLGACGFCEGNAEIAEH 523
                H +  W A++ +C    G A  A H
Sbjct: 479 QEMESHDVVSWSAVI-SCHAQHGCARDALH 507



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 111/452 (24%), Positives = 198/452 (43%), Gaps = 66/452 (14%)

Query: 16  SSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMP------ 69
           S ++ YSK G + EA+ +F +  +R+ VS+N+++SG+++ G   E  R+F  M       
Sbjct: 149 SLVSMYSKCGEMGEARRVFDVAEERDDVSWNSLVSGYVRAGAREEMVRVFAMMRRGGMGL 208

Query: 70  -----------------------------------ERNVVSWTAMICGLADAGRVCEARK 94
                                              + +V   +AMI   A  G + EA  
Sbjct: 209 NSFALGSVIKCCSGRGDGTMDIAEAVHGCVIKAGLDSDVFLVSAMIDMYAKKGALVEAAA 268

Query: 95  LFEEMPERNVVSWNSMVVGLIRNGEL------NEARKVFNSMPIKNV----ISWNAM--- 141
           LF  + E NVV +N+M+ G  R   +      +EA  +++ +  + +     +++++   
Sbjct: 269 LFRSVQEPNVVMFNTMIAGFCRTETVIGKEVASEALTLYSEVQSRGMQPTEFTFSSVLRA 328

Query: 142 --IAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVS 199
             +AGY+E        V+    +E + +  +++I  Y  +G +E+G+  FR  P+ ++V+
Sbjct: 329 CNLAGYLEFGKQIHGQVIKYTFQEDDFI-GSALIDLYFNSGCMEDGFRCFRSSPKHDIVT 387

Query: 200 WTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMIN--GYIRFGRLEEAQNL 257
           WTAM+ G   N  H+++L LF E  G    G   ++ + +S++N    +   R  E    
Sbjct: 388 WTAMVSGCVQNELHEKALSLFHESLGA---GLKPDLFTISSVMNACASLAVARAGEQIQC 444

Query: 258 FDTVPVRDEIS--WTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVE 315
           F T    D  +    S +  Y   G V  A   F  M   D V+W+A+IS   Q+    +
Sbjct: 445 FATKSGFDRFTVMGNSCVHMYARSGDVDAATRRFQEMESHDVVSWSAVISCHAQHGCARD 504

Query: 316 ATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILE-NCLI 374
           A + F EM    V P   TF  +  A      +D G + +  + K    S  I    C++
Sbjct: 505 ALHFFDEMVDAKVVPNEITFLGVLTACSHGGLVDEGLRYYETMNKDYGLSPTIKHCTCVV 564

Query: 375 SMYAKCGVIDNAYNIFSN-MVSRDLVSWNSMV 405
            +  + G + +A    SN +   D V W S++
Sbjct: 565 DLLGRAGRLADAEAFISNGIFHADPVIWRSLL 596



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 68/271 (25%), Positives = 115/271 (42%), Gaps = 22/271 (8%)

Query: 271 SMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPP 330
           +++  Y  +G    A  L   MP R+AV++  +I    +  L   +       R  GV  
Sbjct: 48  TLLAAYCRLGGPLPARRLLDEMPRRNAVSFNLLIDAYSREGLAPLSLETLARARRAGVDV 107

Query: 331 LNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIF 390
              +++    A     ++  GR +H + +     S + + N L+SMY+KCG +  A  +F
Sbjct: 108 DRFSYAAALAACSRAGHLRAGRAVHALAILDGLSSGVFVSNSLVSMYSKCGEMGEARRVF 167

Query: 391 SNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVS 450
                RD VSWNS+V G+   G   E ++VF  M   G   NS     ++  CS  G   
Sbjct: 168 DVAEERDDVSWNSLVSGYVRAGAREEMVRVFAMMRRGGMGLNSFALGSVIKCCSGRG--- 224

Query: 451 RGWELFNAMFDVYK------IQPGPEHYV----SMINLLGRAGKIKEAEEFVLRLPFEPD 500
                 +   D+ +      I+ G +  V    +MI++  + G + EA   + R   EP+
Sbjct: 225 ------DGTMDIAEAVHGCVIKAGLDSDVFLVSAMIDMYAKKGALVEAAA-LFRSVQEPN 277

Query: 501 HRIWGALLGACGFCEGNAEIAEHAAKRLLEL 531
             ++  ++   GFC     I +  A   L L
Sbjct: 278 VVMFNTMIA--GFCRTETVIGKEVASEALTL 306



 Score = 72.0 bits (175), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 64/269 (23%), Positives = 118/269 (43%), Gaps = 55/269 (20%)

Query: 9   SLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRL------SEAR 62
           S V  +++ I  Y+K+G + EA ALF+ + + NVV +N M++GF +   +      SEA 
Sbjct: 245 SDVFLVSAMIDMYAKKGALVEAAALFRSVQEPNVVMFNTMIAGFCRTETVIGKEVASEAL 304

Query: 63  RLFEEMPERNV------VSWTAMICGLA---DAGRVCEARKLFEEMPERNVVSWNSMVVG 113
            L+ E+  R +       S     C LA   + G+    + +     E + +  ++++  
Sbjct: 305 TLYSEVQSRGMQPTEFTFSSVLRACNLAGYLEFGKQIHGQVIKYTFQEDDFIG-SALIDL 363

Query: 114 LIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEME----------- 162
              +G + +  + F S P  ++++W AM++G V+  +  +A+ LF E             
Sbjct: 364 YFNSGCMEDGFRCFRSSPKHDIVTWTAMVSGCVQNELHEKALSLFHESLGAGLKPDLFTI 423

Query: 163 ----------------------------ERNVVTWTSMISGYCRAGEVEEGYCLFRRMPR 194
                                       +R  V   S +  Y R+G+V+     F+ M  
Sbjct: 424 SSVMNACASLAVARAGEQIQCFATKSGFDRFTVMGNSCVHMYARSGDVDAATRRFQEMES 483

Query: 195 KNVVSWTAMIGGFAWNGFHKESLLLFIEM 223
            +VVSW+A+I   A +G  +++L  F EM
Sbjct: 484 HDVVSWSAVISCHAQHGCARDALHFFDEM 512



 Score = 45.8 bits (107), Expect = 0.070,   Method: Compositional matrix adjust.
 Identities = 36/138 (26%), Positives = 68/138 (49%), Gaps = 10/138 (7%)

Query: 16  SSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVV- 74
           S +  Y++ G +D A   FQ M   +VVS++A++S   Q+G   +A   F+EM +  VV 
Sbjct: 460 SCVHMYARSGDVDAATRRFQEMESHDVVSWSAVISCHAQHGCARDALHFFDEMVDAKVVP 519

Query: 75  ---SWTAMICGLADAGRVCEARKLFEEMPE----RNVVSWNSMVVGLI-RNGELNEARK- 125
              ++  ++   +  G V E  + +E M +       +   + VV L+ R G L +A   
Sbjct: 520 NEITFLGVLTACSHGGLVDEGLRYYETMNKDYGLSPTIKHCTCVVDLLGRAGRLADAEAF 579

Query: 126 VFNSMPIKNVISWNAMIA 143
           + N +   + + W +++A
Sbjct: 580 ISNGIFHADPVIWRSLLA 597


>gi|147812499|emb|CAN61868.1| hypothetical protein VITISV_002466 [Vitis vinifera]
          Length = 440

 Score =  282 bits (721), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 133/333 (39%), Positives = 208/333 (62%), Gaps = 1/333 (0%)

Query: 266 EISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRA 325
           E+   +++D Y   G    A+ +F  M D+D ++WT++++G V N  + EA  LF EMR 
Sbjct: 2   ELVNNALVDMYAKXGYFDYAFDVFEKMTDKDVISWTSLVTGCVHNGSYEEALRLFCEMRI 61

Query: 326 HGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDN 385
            G+ P     + +  A      ++ G+Q+H   +K+   S L ++N L+SMYAKCG I++
Sbjct: 62  MGIHPDQIVIAAVLSACAELTVLEFGKQVHANFLKSGLGSSLSVDNSLVSMYAKCGCIED 121

Query: 386 AYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSH 445
           A  +F +M  +D+++W ++++G++ +G   E+L  +  M+ SG  P+ +TF+G+L ACSH
Sbjct: 122 ANKVFDSMEIQDVITWTALIVGYAQNGRGRESLNFYNBMIASGVKPDFITFIGLLFACSH 181

Query: 446 AGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWG 505
           AGLV  G   F +M +VY I+PGPEHY  MI+LLGR+GK+ EA+E + ++  +PD  +W 
Sbjct: 182 AGLVEHGRSYFQSMEEVYGIKPGPEHYACMIDLLGRSGKLMEAKELLNQMAVQPDATVWK 241

Query: 506 ALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLK 565
           ALL AC    GN E+ E AA  L EL+P NA  +V+L N+Y+A+G+  E  K R  M L+
Sbjct: 242 ALLAACRV-HGNVELGERAANNLFELEPKNAVPYVLLSNLYSAAGKWEEAAKTRRLMKLR 300

Query: 566 GVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
           GV K PGCSW+  +  +  F+S D+   + AEI
Sbjct: 301 GVSKEPGCSWIEMSSKVHRFMSEDRSHPRTAEI 333



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 55/188 (29%), Positives = 96/188 (51%), Gaps = 14/188 (7%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEM------PER 71
           +  Y+K G+ D A  +F+ M  ++V+S+ ++++G + NG   EA RLF EM      P++
Sbjct: 9   VDMYAKXGYFDYAFDVFEKMTDKDVISWTSLVTGCVHNGSYEEALRLFCEMRIMGIHPDQ 68

Query: 72  NVVSWTAMICG---LADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFN 128
            V++     C    + + G+   A  L   +     V  NS+V    + G + +A KVF+
Sbjct: 69  IVIAAVLSACAELTVLEFGKQVHANFLKSGLGSSLSVD-NSLVSMYAKCGCIEDANKVFD 127

Query: 129 SMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNV----VTWTSMISGYCRAGEVEE 184
           SM I++VI+W A+I GY +     E++  + +M    V    +T+  ++     AG VE 
Sbjct: 128 SMEIQDVITWTALIVGYAQNGRGRESLNFYNBMIASGVKPDFITFIGLLFACSHAGLVEH 187

Query: 185 GYCLFRRM 192
           G   F+ M
Sbjct: 188 GRSYFQSM 195



 Score = 75.5 bits (184), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 74/285 (25%), Positives = 127/285 (44%), Gaps = 25/285 (8%)

Query: 78  AMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVIS 137
           A++   A  G    A  +FE+M +++V+SW S+V G + NG   EA ++F  M I  +  
Sbjct: 7   ALVDMYAKXGYFDYAFDVFEKMTDKDVISWTSLVTGCVHNGSYEEALRLFCEMRIMGIHP 66

Query: 138 WNAMIAGYVECCMMGEAIVL-FEEMEERNVVTW---------TSMISGYCRAGEVEEGYC 187
              +IA  +  C   E  VL F +    N +            S++S Y + G +E+   
Sbjct: 67  DQIVIAAVLSAC--AELTVLEFGKQVHANFLKSGLGSSLSVDNSLVSMYAKCGCIEDANK 124

Query: 188 LFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIR 247
           +F  M  ++V++WTA+I G+A NG  +ESL  + +M     +G   +  +   ++     
Sbjct: 125 VFDSMEIQDVITWTALIVGYAQNGRGRESLNFYNBMIA---SGVKPDFITFIGLLFACSH 181

Query: 248 FGRLEEAQNLFDTVPVRDEIS-----WTSMIDGYLSVGQVSNAYYLFHNMPDR-DAVAWT 301
            G +E  ++ F ++     I      +  MID     G++  A  L + M  + DA  W 
Sbjct: 182 AGLVEHGRSYFQSMEEVYGIKPGPEHYACMIDLLGRSGKLMEAKELLNQMAVQPDATVWK 241

Query: 302 AMISGLVQN---ELFVEATYLFMEMRAHGVPPLNATFSVLFGAAG 343
           A+++    +   EL   A     E+      P     S L+ AAG
Sbjct: 242 ALLAACRVHGNVELGERAANNLFELEPKNAVPY-VLLSNLYSAAG 285



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 60/210 (28%), Positives = 105/210 (50%), Gaps = 26/210 (12%)

Query: 16  SSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNV-- 73
           S ++ Y+K G I++A  +F  M  ++V+++ A++ G+ QNGR  E+   + +M    V  
Sbjct: 108 SLVSMYAKCGCIEDANKVFDSMEIQDVITWTALIVGYAQNGRGRESLNFYNBMIASGVKP 167

Query: 74  --VSWTAMICGLADAGRVCEARKLFEEMPERNVVS-----WNSMVVGLIRNGELNEARKV 126
             +++  ++   + AG V   R  F+ M E   +      +  M+  L R+G+L EA+++
Sbjct: 168 DFITFIGLLFACSHAGLVEHGRSYFQSMEEVYGIKPGPEHYACMIDLLGRSGKLMEAKEL 227

Query: 127 FNSMPIK-NVISWNAMIA-----GYVECCMMGE--AIVLFEEMEERNVVTWTSMISGYCR 178
            N M ++ +   W A++A     G VE   +GE  A  LF E+E +N V +  + + Y  
Sbjct: 228 LNQMAVQPDATVWKALLAACRVHGNVE---LGERAANNLF-ELEPKNAVPYVLLSNLYSA 283

Query: 179 AGEVEEGYCLFRRMPRKNV-----VSWTAM 203
           AG+ EE     R M  + V      SW  M
Sbjct: 284 AGKWEEAAKTRRLMKLRGVSKEPGCSWIEM 313


>gi|449467070|ref|XP_004151248.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 617

 Score =  282 bits (721), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 167/478 (34%), Positives = 252/478 (52%), Gaps = 16/478 (3%)

Query: 127 FNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGY 186
            +S+P+  V S  A  + +        A ++F+ ++   V  W + +  +       +  
Sbjct: 45  LSSLPLSRVASVCAFNSSF------SYAKLIFQLLDASEVTHWNTCLRSFAEGDSPADAI 98

Query: 187 CLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDN-----GNNCNVQSCNSM 241
            LF R+ R+  +S       F        S LL +    I        G   N+   N +
Sbjct: 99  SLFYRL-REFDISPDHYTCSFVLKAC---SRLLDVRNGKIVHGYVEKLGLQSNMFLQNMI 154

Query: 242 INGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWT 301
           ++ Y   G +  A+ +FD +P RD I+W  MI   + +G    AY LF  MP+R+  +WT
Sbjct: 155 VHLYALCGEIGVARKVFDKMPQRDVITWNIMIARLVKMGDAEGAYKLFAEMPERNVRSWT 214

Query: 302 AMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKT 361
           +MI G  Q     EA  LF+EM   G+ P   T   +  A     N+ LGR+IH    ++
Sbjct: 215 SMIGGYAQCGKSKEAIDLFLEMEDAGLLPNEVTVVAVLVACADMGNLVLGRRIHDFSNRS 274

Query: 362 ESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVF 421
             E ++ + N LI MY KCG +++A  IF NM  R +VSW++M+ G + HG A + L +F
Sbjct: 275 GYEKNIRVCNTLIDMYVKCGCLEDACRIFDNMEERTVVSWSAMIAGLAAHGRAEDALALF 334

Query: 422 ESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGR 481
             M+ +G  PN+VTF+GIL ACSH G+V +G + F +M   Y I P  EHY  M++L  R
Sbjct: 335 NKMINTGVKPNAVTFIGILHACSHMGMVEKGRKYFASMTRDYGIVPRIEHYGCMVDLFSR 394

Query: 482 AGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVV 541
           AG ++EA EF++ +P  P+  +WGALLG C     N ++AE A + L +LDPLN   +VV
Sbjct: 395 AGLLQEAHEFIMNMPIAPNGVVWGALLGGCKV-HKNIKLAEEATRHLSKLDPLNDGYYVV 453

Query: 542 LCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEIL 599
           L NIYA +GR  +  ++R  M  +GV+K PG S +M  G +  F++GD    Q  EI 
Sbjct: 454 LSNIYAEAGRWEDVARVRKLMRDRGVKKTPGWSSIMVEGVVYNFVAGDDTHPQTEEIF 511



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 87/281 (30%), Positives = 147/281 (52%), Gaps = 21/281 (7%)

Query: 8   KSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEE 67
           ++++VHL      Y+  G I  A+ +F  MPQR+V+++N M++  ++ G    A +LF E
Sbjct: 151 QNMIVHL------YALCGEIGVARKVFDKMPQRDVITWNIMIARLVKMGDAEGAYKLFAE 204

Query: 68  MPERNVVSWTAMICGLADAGRVCEARKLFEEMPER----NVVSWNSMVVGLIRNGELNEA 123
           MPERNV SWT+MI G A  G+  EA  LF EM +     N V+  +++V     G L   
Sbjct: 205 MPERNVRSWTSMIGGYAQCGKSKEAIDLFLEMEDAGLLPNEVTVVAVLVACADMGNLVLG 264

Query: 124 RKVFN----SMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRA 179
           R++ +    S   KN+   N +I  YV+C  + +A  +F+ MEER VV+W++MI+G    
Sbjct: 265 RRIHDFSNRSGYEKNIRVCNTLIDMYVKCGCLEDACRIFDNMEERTVVSWSAMIAGLAAH 324

Query: 180 GEVEEGYCLFRRM----PRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNV 235
           G  E+   LF +M     + N V++  ++   +  G  ++    F  M    D G    +
Sbjct: 325 GRAEDALALFNKMINTGVKPNAVTFIGILHACSHMGMVEKGRKYFASMTR--DYGIVPRI 382

Query: 236 QSCNSMINGYIRFGRLEEAQNLFDTVPVR-DEISWTSMIDG 275
           +    M++ + R G L+EA      +P+  + + W +++ G
Sbjct: 383 EHYGCMVDLFSRAGLLQEAHEFIMNMPIAPNGVVWGALLGG 423



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 97/401 (24%), Positives = 175/401 (43%), Gaps = 77/401 (19%)

Query: 55  NGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWN---SMV 111
           N   S A+ +F+ +    V  W   +   A+     +A  LF  + E ++   +   S V
Sbjct: 60  NSSFSYAKLIFQLLDASEVTHWNTCLRSFAEGDSPADAISLFYRLREFDISPDHYTCSFV 119

Query: 112 VGL------IRNGELNEARKVFNSMPIK-NVISWNAMIAGYVECCMMGEAIVLFEEMEER 164
           +        +RNG++         + ++ N+   N ++  Y  C  +G A  +F++M +R
Sbjct: 120 LKACSRLLDVRNGKI--VHGYVEKLGLQSNMFLQNMIVHLYALCGEIGVARKVFDKMPQR 177

Query: 165 NVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMK 224
           +V+TW  MI+   + G+ E  Y LF  MP +NV SWT+MIGG+A  G  KE++ LF+EM+
Sbjct: 178 DVITWNIMIARLVKMGDAEGAYKLFAEMPERNVRSWTSMIGGYAQCGKSKEAIDLFLEME 237

Query: 225 --GICDN------------------------------GNNCNVQSCNSMINGYIRFGRLE 252
             G+  N                              G   N++ CN++I+ Y++ G LE
Sbjct: 238 DAGLLPNEVTVVAVLVACADMGNLVLGRRIHDFSNRSGYEKNIRVCNTLIDMYVKCGCLE 297

Query: 253 EAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNEL 312
           +A  +FD +  R  +SW++MI G  + G+  +A  LF+ M +                  
Sbjct: 298 DACRIFDNMEERTVVSWSAMIAGLAAHGRAEDALALFNKMINT----------------- 340

Query: 313 FVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILE-N 371
                         GV P   TF  +  A      ++ GR+    + +       I    
Sbjct: 341 --------------GVKPNAVTFIGILHACSHMGMVEKGRKYFASMTRDYGIVPRIEHYG 386

Query: 372 CLISMYAKCGVIDNAYNIFSNM-VSRDLVSWNSMVMGFSHH 411
           C++ ++++ G++  A+    NM ++ + V W +++ G   H
Sbjct: 387 CMVDLFSRAGLLQEAHEFIMNMPIAPNGVVWGALLGGCKVH 427



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 117/458 (25%), Positives = 198/458 (43%), Gaps = 65/458 (14%)

Query: 39  QRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEE 98
           Q N+   N ++  +   G +  AR++F++MP+R+V++W  MI  L   G    A KLF E
Sbjct: 145 QSNMFLQNMIVHLYALCGEIGVARKVFDKMPQRDVITWNIMIARLVKMGDAEGAYKLFAE 204

Query: 99  MPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWN-AMIAGYVECCMMGEAIVL 157
           MPERNV SW SM+ G  + G+  EA  +F  M    ++     ++A  V C  MG  +VL
Sbjct: 205 MPERNVRSWTSMIGGYAQCGKSKEAIDLFLEMEDAGLLPNEVTVVAVLVACADMGN-LVL 263

Query: 158 FEEME--------ERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAW 209
              +         E+N+    ++I  Y + G +E+   +F  M  + VVSW+AMI G A 
Sbjct: 264 GRRIHDFSNRSGYEKNIRVCNTLIDMYVKCGCLEDACRIFDNMEERTVVSWSAMIAGLAA 323

Query: 210 NGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEI-- 267
           +G  +++L LF +M    + G   N  +   +++     G +E+ +  F ++     I  
Sbjct: 324 HGRAEDALALFNKM---INTGVKPNAVTFIGILHACSHMGMVEKGRKYFASMTRDYGIVP 380

Query: 268 ---SWTSMIDGYLSVGQVSNAYYLFHNMP-DRDAVAWTAMISGLVQN---ELFVEATYLF 320
               +  M+D +   G +  A+    NMP   + V W A++ G   +   +L  EAT   
Sbjct: 381 RIEHYGCMVDLFSRAGLLQEAHEFIMNMPIAPNGVVWGALLGGCKVHKNIKLAEEATRHL 440

Query: 321 MEMRAHGVPPLNATFSV----LFGAAGATANIDLGRQI--HCVLMKTESESDLILENCLI 374
            ++      PLN  + V    ++  AG   ++   R++     + KT   S +++E    
Sbjct: 441 SKL-----DPLNDGYYVVLSNIYAEAGRWEDVARVRKLMRDRGVKKTPGWSSIMVE---- 491

Query: 375 SMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLE----SGTH 430
                 GV+ N                   V G   H    E  + +E +L+     G  
Sbjct: 492 ------GVVYN------------------FVAGDDTHPQTEEIFQTWEKLLQRMKLKGYV 527

Query: 431 PNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPG 468
           PN+   L  +        + R  E    +F + K  PG
Sbjct: 528 PNTSVVLLDMEEDQKEKFLYRHSEKLAVVFGLIKTTPG 565



 Score = 89.0 bits (219), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 89/357 (24%), Positives = 155/357 (43%), Gaps = 36/357 (10%)

Query: 7   PKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFE 66
           P+  V+     I +  K G  + A  LF  MP+RNV S+ +M+ G+ Q G+  EA  LF 
Sbjct: 175 PQRDVITWNIMIARLVKMGDAEGAYKLFAEMPERNVRSWTSMIGGYAQCGKSKEAIDLFL 234

Query: 67  EMPER----NVVSWTAMICGLADAGRVCEARKLFE----EMPERNVVSWNSMVVGLIRNG 118
           EM +     N V+  A++   AD G +   R++ +       E+N+   N+++   ++ G
Sbjct: 235 EMEDAGLLPNEVTVVAVLVACADMGNLVLGRRIHDFSNRSGYEKNIRVCNTLIDMYVKCG 294

Query: 119 ELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEM----EERNVVTWTSMIS 174
            L +A ++F++M  + V+SW+AMIAG        +A+ LF +M     + N VT+  ++ 
Sbjct: 295 CLEDACRIFDNMEERTVVSWSAMIAGLAAHGRAEDALALFNKMINTGVKPNAVTFIGILH 354

Query: 175 GYCRAGEVEEGYCLFRRMPRK-----NVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDN 229
                G VE+G   F  M R       +  +  M+  F+  G  +E+    + M  I  N
Sbjct: 355 ACSHMGMVEKGRKYFASMTRDYGIVPRIEHYGCMVDLFSRAGLLQEAHEFIMNMP-IAPN 413

Query: 230 GNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLF 289
           G           ++  I+    EEA      +   ++  +  + + Y   G+  +   + 
Sbjct: 414 GVVWGALLGGCKVHKNIKLA--EEATRHLSKLDPLNDGYYVVLSNIYAEAGRWEDVARVR 471

Query: 290 HNMPDR---DAVAWTA-MISGLVQN------------ELFVEATYLFMEMRAHGVPP 330
             M DR       W++ M+ G+V N            E+F     L   M+  G  P
Sbjct: 472 KLMRDRGVKKTPGWSSIMVEGVVYNFVAGDDTHPQTEEIFQTWEKLLQRMKLKGYVP 528


>gi|224088613|ref|XP_002308496.1| predicted protein [Populus trichocarpa]
 gi|222854472|gb|EEE92019.1| predicted protein [Populus trichocarpa]
          Length = 621

 Score =  282 bits (721), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 169/540 (31%), Positives = 275/540 (50%), Gaps = 28/540 (5%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWT 77
           I  YSK   I  A+ +F  +P +N  SYNA+L  +  N    E   LF  +   +     
Sbjct: 59  INLYSKTKHIHHARHVFDQIPHKNTFSYNALLIAYTMNNHHKETINLFSSLLLSSSGDLQ 118

Query: 78  AMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVIS 137
                  +    C  + L   +   +V     +   ++R G             +++V  
Sbjct: 119 P-----NNYSITCLLKSLSSLLMVTDVCLGKEIHCFVLRRG------------LVEDVFV 161

Query: 138 WNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMP---- 193
            NA+I+ Y +C  +G A  LF++M ER+VVTW SMI+GY +AG  +E   L+R M     
Sbjct: 162 ENALISFYSKCLGVGFARKLFDKMRERDVVTWNSMIAGYAQAGFFKECKELYREMGALPG 221

Query: 194 -RKNVVSWTAMIGGFAWNGFHKESLLLFIEM-KGICDNGNNCNVQSCNSMINGYIRFGRL 251
            + N V+  +++          + L+  +E+ + I DN    +V  CN++I  Y + G L
Sbjct: 222 FKPNAVTVLSVLQAC----MQSQDLVFGMEVHRYIVDNKVELDVLVCNALIGLYAKCGSL 277

Query: 252 EEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNE 311
           + A+ LFD +  +DE+++ ++I GY++ G V     LF  M  R    W A+ISGLVQN 
Sbjct: 278 DYARELFDEMSEKDEVTYGAIISGYMAHGVVDKGMELFREMKSRVLSTWNAVISGLVQNN 337

Query: 312 LFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILEN 371
                  L  EM+  G  P   T S +       +N+  G++IH   +K   + ++ +  
Sbjct: 338 RHEGVVDLVREMQGLGFRPNAVTLSSVLPTLSYFSNLKGGKEIHGYAVKNGYDRNIYVAT 397

Query: 372 CLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHP 431
            +I  YAK G +  A  +F     R L+ W +++   + HG AN  L  F+ ML +G  P
Sbjct: 398 AIIDTYAKLGFLFGAQYVFDQSKERSLIIWTAIISAHAAHGDANSALTFFDEMLSNGIQP 457

Query: 432 NSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEF 491
           + VTF  +L+AC+H G+V + WE+FN+M   Y IQP  EHY  M+ +LGRAG++ +A EF
Sbjct: 458 DHVTFTAVLAACAHCGMVDKAWEIFNSMSKKYGIQPLGEHYACMVGVLGRAGRLSQATEF 517

Query: 492 VLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGR 551
           +  +P EP+ ++WGALL     C  + E+ + A   L E++P N   + ++ N+Y+ +G+
Sbjct: 518 ISTMPIEPNAKVWGALLHGASLCV-DVELGKFACDHLFEIEPENTGNYAIMANLYSQAGK 576



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 66/268 (24%), Positives = 125/268 (46%), Gaps = 12/268 (4%)

Query: 272 MIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEA---TYLFMEMRAHGV 328
           +I+ Y     + +A ++F  +P ++  ++ A++     N    E        +   +  +
Sbjct: 58  LINLYSKTKHIHHARHVFDQIPHKNTFSYNALLIAYTMNNHHKETINLFSSLLLSSSGDL 117

Query: 329 PPLNATFSVLFGAAGA---TANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDN 385
            P N + + L  +  +     ++ LG++IHC +++     D+ +EN LIS Y+KC  +  
Sbjct: 118 QPNNYSITCLLKSLSSLLMVTDVCLGKEIHCFVLRRGLVEDVFVENALISFYSKCLGVGF 177

Query: 386 AYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESM-LESGTHPNSVTFLGILSACS 444
           A  +F  M  RD+V+WNSM+ G++  G   E  +++  M    G  PN+VT L +L AC 
Sbjct: 178 ARKLFDKMRERDVVTWNSMIAGYAQAGFFKECKELYREMGALPGFKPNAVTVLSVLQACM 237

Query: 445 HAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIW 504
            +  +  G E+   + D  K++       ++I L  + G +  A E    +  E D   +
Sbjct: 238 QSQDLVFGMEVHRYIVD-NKVELDVLVCNALIGLYAKCGSLDYARELFDEMS-EKDEVTY 295

Query: 505 GALLG---ACGFCEGNAEIAEHAAKRLL 529
           GA++    A G  +   E+      R+L
Sbjct: 296 GAIISGYMAHGVVDKGMELFREMKSRVL 323



 Score = 85.5 bits (210), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 89/366 (24%), Positives = 159/366 (43%), Gaps = 67/366 (18%)

Query: 1   MSERNHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMP-----QRNVVSYNAMLSGFLQN 55
           M ER+     VV   S I  Y++ GF  E K L++ M      + N V+  ++L   +Q+
Sbjct: 185 MRERD-----VVTWNSMIAGYAQAGFFKECKELYREMGALPGFKPNAVTVLSVLQACMQS 239

Query: 56  GRL----SEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMV 111
             L       R + +   E +V+   A+I   A  G +  AR+LF+EM E++ V++ +++
Sbjct: 240 QDLVFGMEVHRYIVDNKVELDVLVCNALIGLYAKCGSLDYARELFDEMSEKDEVTYGAII 299

Query: 112 VGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEME----ERNVV 167
            G + +G +++  ++F  M  + + +WNA+I+G V+       + L  EM+      N V
Sbjct: 300 SGYMAHGVVDKGMELFREMKSRVLSTWNAVISGLVQNNRHEGVVDLVREMQGLGFRPNAV 359

Query: 168 TWTSMISGYC-----RAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIE 222
           T +S++         + G+   GY +     R N+   TA+I  +A  GF          
Sbjct: 360 TLSSVLPTLSYFSNLKGGKEIHGYAVKNGYDR-NIYVATAIIDTYAKLGF---------- 408

Query: 223 MKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQV 282
                                    FG    AQ +FD    R  I WT++I  + + G  
Sbjct: 409 ------------------------LFG----AQYVFDQSKERSLIIWTAIISAHAAHGDA 440

Query: 283 SNAYYLFHNMPDR----DAVAWTAMISGLVQNELFVEATYLFMEM-RAHGVPPLNATFSV 337
           ++A   F  M       D V +TA+++      +  +A  +F  M + +G+ PL   ++ 
Sbjct: 441 NSALTFFDEMLSNGIQPDHVTFTAVLAACAHCGMVDKAWEIFNSMSKKYGIQPLGEHYAC 500

Query: 338 LFGAAG 343
           + G  G
Sbjct: 501 MVGVLG 506



 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 68/323 (21%), Positives = 128/323 (39%), Gaps = 80/323 (24%)

Query: 172 MISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKES--------------- 216
           +I+ Y +   +     +F ++P KN  S+ A++  +  N  HKE+               
Sbjct: 58  LINLYSKTKHIHHARHVFDQIPHKNTFSYNALLIAYTMNNHHKETINLFSSLLLSSSGDL 117

Query: 217 ----------------------------LLLFIEMKGICDNGNNCNVQSCNSMINGYIRF 248
                                       +  F+  +G+ +     +V   N++I+ Y + 
Sbjct: 118 QPNNYSITCLLKSLSSLLMVTDVCLGKEIHCFVLRRGLVE-----DVFVENALISFYSKC 172

Query: 249 GRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLV 308
             +  A+ LFD +  RD ++W SMI GY   G                            
Sbjct: 173 LGVGFARKLFDKMRERDVVTWNSMIAGYAQAG---------------------------- 204

Query: 309 QNELFVEATYLFMEMRA-HGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDL 367
               F E   L+ EM A  G  P   T   +  A   + ++  G ++H  ++  + E D+
Sbjct: 205 ---FFKECKELYREMGALPGFKPNAVTVLSVLQACMQSQDLVFGMEVHRYIVDNKVELDV 261

Query: 368 ILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLES 427
           ++ N LI +YAKCG +D A  +F  M  +D V++ +++ G+  HG+ ++ +++F  M   
Sbjct: 262 LVCNALIGLYAKCGSLDYARELFDEMSEKDEVTYGAIISGYMAHGVVDKGMELFREMKSR 321

Query: 428 GTHPNSVTFLGILSACSHAGLVS 450
                +    G++    H G+V 
Sbjct: 322 VLSTWNAVISGLVQNNRHEGVVD 344



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 59/214 (27%), Positives = 106/214 (49%), Gaps = 18/214 (8%)

Query: 15  TSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNV- 73
           T+ I  Y+K GF+  A+ +F    +R+++ + A++S    +G  + A   F+EM    + 
Sbjct: 397 TAIIDTYAKLGFLFGAQYVFDQSKERSLIIWTAIISAHAAHGDANSALTFFDEMLSNGIQ 456

Query: 74  ---VSWTAMICGLADAGRVCEARKLFEEMPERNVVS-----WNSMVVGLIRNGELNEARK 125
              V++TA++   A  G V +A ++F  M ++  +      +  MV  L R G L++A +
Sbjct: 457 PDHVTFTAVLAACAHCGMVDKAWEIFNSMSKKYGIQPLGEHYACMVGVLGRAGRLSQATE 516

Query: 126 VFNSMPIK-NVISWNAMIAGYVEC--CMMGE-AIVLFEEMEERNVVTWTSMISGYCRAGE 181
             ++MPI+ N   W A++ G   C    +G+ A     E+E  N   +  M + Y +AG+
Sbjct: 517 FISTMPIEPNAKVWGALLHGASLCVDVELGKFACDHLFEIEPENTGNYAIMANLYSQAGK 576

Query: 182 VEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKE 215
            +E          +N +   AM+GGF+  G  KE
Sbjct: 577 WKEAD---EDTSNENALEIYAMLGGFS--GLMKE 605


>gi|449438556|ref|XP_004137054.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Cucumis sativus]
 gi|449479088|ref|XP_004155501.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Cucumis sativus]
          Length = 855

 Score =  282 bits (721), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 180/593 (30%), Positives = 302/593 (50%), Gaps = 40/593 (6%)

Query: 41  NVVSYNAMLSGFLQNGRLSEARRLFEEMPER---NVVSWTAMICGLADAGRVCEARKLFE 97
           NV   N++++ + + G L +A ++F+E+ ER   ++VSW +++      G+   A ++  
Sbjct: 161 NVFICNSIVAMYGRCGALDDAHQMFDEVLERKIEDIVSWNSILAAYVQGGQSRTALRIAF 220

Query: 98  EMPERNVVSWNSMVVGLI------------RNGELNEARKVFNSMPIKNVISWNAMIAGY 145
            M     +      + L+            ++G+      V N + + +V   NA+++ Y
Sbjct: 221 RMGNHYSLKLRPDAITLVNILPACASVFALQHGKQVHGFSVRNGL-VDDVFVGNALVSMY 279

Query: 146 VECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKN----VVSWT 201
            +C  M EA  +FE +++++VV+W +M++GY + G  +    LF+ M  ++    V++W+
Sbjct: 280 AKCSKMNEANKVFEGIKKKDVVSWNAMVTGYSQIGSFDSALSLFKMMQEEDIKLDVITWS 339

Query: 202 AMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTV 261
           A+I G+A  G   E+L +F +M+     G   NV +  S+++G    G L   +     V
Sbjct: 340 AVIAGYAQKGHGFEALDVFRQMQLY---GLEPNVVTLASLLSGCASVGALLYGKQTHAYV 396

Query: 262 -----------PVRDEISWTSMIDGYLSVGQVSNAYYLFHNM--PDRDAVAWTAMISGLV 308
                         D +    +ID Y        A  +F ++   D++ V WT MI G  
Sbjct: 397 IKNILNLNWNDKEDDLLVLNGLIDMYAKCKSYRVARSIFDSIEGKDKNVVTWTVMIGGYA 456

Query: 309 QNELFVEATYLFMEM--RAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESD 366
           Q+    +A  LF ++  +   + P   T S    A      + LGRQ+H   ++ E+ES+
Sbjct: 457 QHGEANDALKLFAQIFKQKTSLKPNAFTLSCALMACARLGELRLGRQLHAYALRNENESE 516

Query: 367 -LILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESML 425
            L + NCLI MY+K G ID A  +F NM  R++VSW S++ G+  HG   E L +F+ M 
Sbjct: 517 VLYVGNCLIDMYSKSGDIDAARAVFDNMKLRNVVSWTSLMTGYGMHGRGEEALHLFDQMQ 576

Query: 426 ESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKI 485
           + G   + +TFL +L ACSH+G+V +G   F+ M   + I PG EHY  M++LLGRAG++
Sbjct: 577 KLGFAVDGITFLVVLYACSHSGMVDQGMIYFHDMVKGFGITPGAEHYACMVDLLGRAGRL 636

Query: 486 KEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNI 545
            EA E +  +  EP   +W ALL A      N E+ E+AA +L EL   N  ++ +L N+
Sbjct: 637 NEAMELIKNMSMEPTAVVWVALLSASRI-HANIELGEYAASKLTELGAENDGSYTLLSNL 695

Query: 546 YAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
           YA + R  +  ++R  M   G+RK PGCSW+        F  GD+   +  +I
Sbjct: 696 YANARRWKDVARIRSLMKHTGIRKRPGCSWIQGKKSTTTFFVGDRSHPESEQI 748



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 92/352 (26%), Positives = 166/352 (47%), Gaps = 48/352 (13%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPER----NV 73
           ++ Y+K   ++EA  +F+ + +++VVS+NAM++G+ Q G    A  LF+ M E     +V
Sbjct: 276 VSMYAKCSKMNEANKVFEGIKKKDVVSWNAMVTGYSQIGSFDSALSLFKMMQEEDIKLDV 335

Query: 74  VSWTAMICGLADAGRVCEARKLFEEMP----ERNVVSWNSMVVGLIRNGELNEARKVFNS 129
           ++W+A+I G A  G   EA  +F +M     E NVV+  S++ G    G L   ++  ++
Sbjct: 336 ITWSAVIAGYAQKGHGFEALDVFRQMQLYGLEPNVVTLASLLSGCASVGALLYGKQT-HA 394

Query: 130 MPIKNV--ISW----------NAMIAGYVECCMMGEAIVLFEEME--ERNVVTWTSMISG 175
             IKN+  ++W          N +I  Y +C     A  +F+ +E  ++NVVTWT MI G
Sbjct: 395 YVIKNILNLNWNDKEDDLLVLNGLIDMYAKCKSYRVARSIFDSIEGKDKNVVTWTVMIGG 454

Query: 176 YCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNV 235
           Y + GE  +   LF ++ ++              N F     L+     G    G   + 
Sbjct: 455 YAQHGEANDALKLFAQIFKQKT--------SLKPNAFTLSCALMACARLGELRLGRQLHA 506

Query: 236 QSC------------NSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVS 283
            +             N +I+ Y + G ++ A+ +FD + +R+ +SWTS++ GY   G+  
Sbjct: 507 YALRNENESEVLYVGNCLIDMYSKSGDIDAARAVFDNMKLRNVVSWTSLMTGYGMHGRGE 566

Query: 284 NAYYLFHNMPDR----DAVAWTAMISGLVQNELFVEATYLFMEM-RAHGVPP 330
            A +LF  M       D + +  ++     + +  +    F +M +  G+ P
Sbjct: 567 EALHLFDQMQKLGFAVDGITFLVVLYACSHSGMVDQGMIYFHDMVKGFGITP 618



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 83/367 (22%), Positives = 158/367 (43%), Gaps = 48/367 (13%)

Query: 142 IAGYVECCMMGEAIVLFEEM--EERNVVTWTSMISGYCRAGEVEEG---YCLFRRM---P 193
           +  Y+EC    EA+ L + +      V  W ++I    + G +++    YC  +R+   P
Sbjct: 66  VGAYIECGASAEAVSLLQRLIPSHSTVFWWNALIRRSVKLGLLDDTLGFYCQMQRLGWLP 125

Query: 194 RKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEE 253
                 +     G   +  H  S+   +     C NG   NV  CNS++  Y R G L++
Sbjct: 126 DHYTFPFVLKACGEIPSLRHGASVHAIV-----CANGLGSNVFICNSIVAMYGRCGALDD 180

Query: 254 AQNLFDTV---PVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQN 310
           A  +FD V    + D +SW S++  Y+  GQ   A  +   M                  
Sbjct: 181 AHQMFDEVLERKIEDIVSWNSILAAYVQGGQSRTALRIAFRM------------------ 222

Query: 311 ELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILE 370
                  +  +++R   +  +N     +  A  +   +  G+Q+H   ++     D+ + 
Sbjct: 223 -----GNHYSLKLRPDAITLVN-----ILPACASVFALQHGKQVHGFSVRNGLVDDVFVG 272

Query: 371 NCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTH 430
           N L+SMYAKC  ++ A  +F  +  +D+VSWN+MV G+S  G  +  L +F+ M E    
Sbjct: 273 NALVSMYAKCSKMNEANKVFEGIKKKDVVSWNAMVTGYSQIGSFDSALSLFKMMQEEDIK 332

Query: 431 PNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKI---KE 487
            + +T+  +++  +  G      ++F  M  +Y ++P      S+++     G +   K+
Sbjct: 333 LDVITWSAVIAGYAQKGHGFEALDVFRQM-QLYGLEPNVVTLASLLSGCASVGALLYGKQ 391

Query: 488 AEEFVLR 494
              +V++
Sbjct: 392 THAYVIK 398



 Score = 95.1 bits (235), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 95/370 (25%), Positives = 167/370 (45%), Gaps = 76/370 (20%)

Query: 8   KSLVVHLTSSITKYSKRGFIDEAKALFQLMPQR----NVVSYNAMLSGFLQNGRLSEARR 63
           K  VV   + +T YS+ G  D A +LF++M +     +V++++A+++G+ Q G   EA  
Sbjct: 297 KKDVVSWNAMVTGYSQIGSFDSALSLFKMMQEEDIKLDVITWSAVIAGYAQKGHGFEALD 356

Query: 64  LFEEMP----ERNVVSWTAMICGLADAGRV------------------------------ 89
           +F +M     E NVV+  +++ G A  G +                              
Sbjct: 357 VFRQMQLYGLEPNVVTLASLLSGCASVGALLYGKQTHAYVIKNILNLNWNDKEDDLLVLN 416

Query: 90  --------CE----ARKLFE--EMPERNVVSWNSMVVGLIRNGELNEARKVFNSM-PIKN 134
                   C+    AR +F+  E  ++NVV+W  M+ G  ++GE N+A K+F  +   K 
Sbjct: 417 GLIDMYAKCKSYRVARSIFDSIEGKDKNVVTWTVMIGGYAQHGEANDALKLFAQIFKQKT 476

Query: 135 VISWNA--MIAGYVECCMMGE--------AIVLFEEMEERNVVTWTSMISGYCRAGEVEE 184
            +  NA  +    + C  +GE        A  L  E E   +     +I  Y ++G+++ 
Sbjct: 477 SLKPNAFTLSCALMACARLGELRLGRQLHAYALRNENESEVLYVGNCLIDMYSKSGDIDA 536

Query: 185 GYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMK--GICDNGNNCNVQ----SC 238
              +F  M  +NVVSWT+++ G+  +G  +E+L LF +M+  G   +G    V     S 
Sbjct: 537 ARAVFDNMKLRNVVSWTSLMTGYGMHGRGEEALHLFDQMQKLGFAVDGITFLVVLYACSH 596

Query: 239 NSMIN-GYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMP-DRD 296
           + M++ G I F  + +    F   P  +   +  M+D     G+++ A  L  NM  +  
Sbjct: 597 SGMVDQGMIYFHDMVKG---FGITPGAEH--YACMVDLLGRAGRLNEAMELIKNMSMEPT 651

Query: 297 AVAWTAMISG 306
           AV W A++S 
Sbjct: 652 AVVWVALLSA 661



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/152 (28%), Positives = 83/152 (54%), Gaps = 11/152 (7%)

Query: 4   RNHPKSLVVHLTSS-ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEAR 62
           RN  +S V+++ +  I  YSK G ID A+A+F  M  RNVVS+ ++++G+  +GR  EA 
Sbjct: 510 RNENESEVLYVGNCLIDMYSKSGDIDAARAVFDNMKLRNVVSWTSLMTGYGMHGRGEEAL 569

Query: 63  RLFEEMPERNV----VSWTAMICGLADAGRVCEARKLFEEMPERNVVS-----WNSMVVG 113
            LF++M +       +++  ++   + +G V +    F +M +   ++     +  MV  
Sbjct: 570 HLFDQMQKLGFAVDGITFLVVLYACSHSGMVDQGMIYFHDMVKGFGITPGAEHYACMVDL 629

Query: 114 LIRNGELNEARKVFNSMPIK-NVISWNAMIAG 144
           L R G LNEA ++  +M ++   + W A+++ 
Sbjct: 630 LGRAGRLNEAMELIKNMSMEPTAVVWVALLSA 661


>gi|413934850|gb|AFW69401.1| hypothetical protein ZEAMMB73_719952 [Zea mays]
          Length = 742

 Score =  282 bits (721), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 161/484 (33%), Positives = 252/484 (52%), Gaps = 3/484 (0%)

Query: 118 GELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYC 177
           G  ++AR+ F+ +P K+ + W  +I G V   ++ EA  L  +  ERNVV+WTS+I+GY 
Sbjct: 154 GLTDDARRAFDEIPAKDAVVWATVIGGLVRWGLLDEARRLLVQAPERNVVSWTSLIAGYS 213

Query: 178 RAGEVEEGYCLFRRMPRKNVV-SWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQ 236
           RAG   +    F  M    V     A+IG  +     K   L  +    +          
Sbjct: 214 RAGRPADAVYCFNCMLSDGVAPDEVAVIGALSACSKLKNLDLGRLLHLLVGQKRIRMTDN 273

Query: 237 SCNSMINGYIRFGRLEEAQNLFDTVPV-RDEISWTSMIDGYLSVGQVSNAYYLFHNMPDR 295
              ++I+ Y + G + +AQ +FD V   +    W ++IDGY  +G V  A  LF  M  R
Sbjct: 274 LVVALIDMYAKCGDIAQAQAVFDAVGRGQKPEPWNAIIDGYCKLGHVDVARSLFDQMGAR 333

Query: 296 DAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIH 355
           D + + +MI+G + +    +A  LFM+MR HG+   N T   L  A  +   +  GR +H
Sbjct: 334 DVITFNSMITGYIHSGRLRDALQLFMQMRRHGMRADNFTVVSLLTACASLGALPHGRALH 393

Query: 356 CVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLAN 415
             + +   E D+ L   L+ MY KCG +D A  +F  M  RD+ +W +M+ G + +G+  
Sbjct: 394 ASIEQRIVEEDVYLGTALLDMYMKCGRVDEATAVFHRMGERDVHTWTAMIAGLAFNGMGK 453

Query: 416 ETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSM 475
           + L+ F  M   G  P SVT++ +L+ACSH+ L+  G   FN M  ++K+ P  EHY  M
Sbjct: 454 DALESFCQMKRDGFQPTSVTYIAVLTACSHSSLLDEGRLHFNEMRSLHKLHPQVEHYGCM 513

Query: 476 INLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLN 535
           I+LL R+G + EA   V  +P +P+  IWG++L AC     N ++A HAA+ LL+L P  
Sbjct: 514 IDLLARSGLLDEAMHLVQTMPMQPNAVIWGSILSACRV-HKNIDLARHAAEHLLKLAPEE 572

Query: 536 APAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQV 595
              +V L NIY  S +  +  ++RM M  +GV+K  G S +   G +  F++ D+     
Sbjct: 573 DAVYVQLYNIYIDSRQWADAKRVRMLMEERGVKKTAGYSSITVAGQVHKFVANDQSHPWT 632

Query: 596 AEIL 599
            EI+
Sbjct: 633 LEIM 636



 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 119/440 (27%), Positives = 213/440 (48%), Gaps = 34/440 (7%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWT 77
           I  Y+  G  D+A+  F  +P ++ V +  ++ G ++ G L EARRL  + PERNVVSWT
Sbjct: 147 IHMYASMGLTDDARRAFDEIPAKDAVVWATVIGGLVRWGLLDEARRLLVQAPERNVVSWT 206

Query: 78  AMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMP------ 131
           ++I G + AGR  +A   F  M    V      V+     G L+   K+ N         
Sbjct: 207 SLIAGYSRAGRPADAVYCFNCMLSDGVAPDEVAVI-----GALSACSKLKNLDLGRLLHL 261

Query: 132 ---------IKNVISWNAMIAGYVECCMMGEAIVLFEEM-EERNVVTWTSMISGYCRAGE 181
                      N++   A+I  Y +C  + +A  +F+ +   +    W ++I GYC+ G 
Sbjct: 262 LVGQKRIRMTDNLVV--ALIDMYAKCGDIAQAQAVFDAVGRGQKPEPWNAIIDGYCKLGH 319

Query: 182 VEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSM 241
           V+    LF +M  ++V+++ +MI G+  +G  +++L LF++M+      +N  V    S+
Sbjct: 320 VDVARSLFDQMGARDVITFNSMITGYIHSGRLRDALQLFMQMRRHGMRADNFTVV---SL 376

Query: 242 INGYIRFGRLEEAQNLFDTVPVR----DEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDA 297
           +      G L   + L  ++  R    D    T+++D Y+  G+V  A  +FH M +RD 
Sbjct: 377 LTACASLGALPHGRALHASIEQRIVEEDVYLGTALLDMYMKCGRVDEATAVFHRMGERDV 436

Query: 298 VAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCV 357
             WTAMI+GL  N +  +A   F +M+  G  P + T+  +  A   ++ +D GR +H  
Sbjct: 437 HTWTAMIAGLAFNGMGKDALESFCQMKRDGFQPTSVTYIAVLTACSHSSLLDEGR-LHFN 495

Query: 358 LMKTESESDLILEN--CLISMYAKCGVIDNAYNIFSNM-VSRDLVSWNSMVMGFSHHGLA 414
            M++  +    +E+  C+I + A+ G++D A ++   M +  + V W S++     H   
Sbjct: 496 EMRSLHKLHPQVEHYGCMIDLLARSGLLDEAMHLVQTMPMQPNAVIWGSILSACRVHKNI 555

Query: 415 NETLKVFESMLESGTHPNSV 434
           +      E +L+     ++V
Sbjct: 556 DLARHAAEHLLKLAPEEDAV 575



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 79/307 (25%), Positives = 139/307 (45%), Gaps = 34/307 (11%)

Query: 239 NSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAV 298
           N +I+ Y   G  ++A+  FD +P +D + W ++I G +  G +  A  L    P+R+ V
Sbjct: 144 NPLIHMYASMGLTDDARRAFDEIPAKDAVVWATVIGGLVRWGLLDEARRLLVQAPERNVV 203

Query: 299 AWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVL 358
           +WT++I+G  +     +A Y F  M + GV P          A     N+DLGR +H ++
Sbjct: 204 SWTSLIAGYSRAGRPADAVYCFNCMLSDGVAPDEVAVIGALSACSKLKNLDLGRLLHLLV 263

Query: 359 MKTESESDLILENCLISMYAKCGVI--------------------------------DNA 386
            +        L   LI MYAKCG I                                D A
Sbjct: 264 GQKRIRMTDNLVVALIDMYAKCGDIAQAQAVFDAVGRGQKPEPWNAIIDGYCKLGHVDVA 323

Query: 387 YNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHA 446
            ++F  M +RD++++NSM+ G+ H G   + L++F  M   G   ++ T + +L+AC+  
Sbjct: 324 RSLFDQMGARDVITFNSMITGYIHSGRLRDALQLFMQMRRHGMRADNFTVVSLLTACASL 383

Query: 447 GLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGA 506
           G +  G  L +A  +   ++       +++++  + G++ EA     R+  E D   W A
Sbjct: 384 GALPHGRAL-HASIEQRIVEEDVYLGTALLDMYMKCGRVDEATAVFHRMG-ERDVHTWTA 441

Query: 507 LLGACGF 513
           ++    F
Sbjct: 442 MIAGLAF 448



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 39/140 (27%), Positives = 72/140 (51%), Gaps = 10/140 (7%)

Query: 15  TSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMP----E 70
           T+ +  Y K G +DEA A+F  M +R+V ++ AM++G   NG   +A   F +M     +
Sbjct: 409 TALLDMYMKCGRVDEATAVFHRMGERDVHTWTAMIAGLAFNGMGKDALESFCQMKRDGFQ 468

Query: 71  RNVVSWTAMICGLADAGRVCEARKLFEEMP-----ERNVVSWNSMVVGLIRNGELNEARK 125
              V++ A++   + +  + E R  F EM         V  +  M+  L R+G L+EA  
Sbjct: 469 PTSVTYIAVLTACSHSSLLDEGRLHFNEMRSLHKLHPQVEHYGCMIDLLARSGLLDEAMH 528

Query: 126 VFNSMPIK-NVISWNAMIAG 144
           +  +MP++ N + W ++++ 
Sbjct: 529 LVQTMPMQPNAVIWGSILSA 548


>gi|359492768|ref|XP_002279149.2| PREDICTED: pentatricopeptide repeat-containing protein At1g43980,
           mitochondrial-like [Vitis vinifera]
          Length = 665

 Score =  282 bits (721), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 161/528 (30%), Positives = 279/528 (52%), Gaps = 47/528 (8%)

Query: 91  EARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCM 150
           ++ ++FE++ ++N++SWN  +   +R GEL  AR VF+ MP ++V+SWN MI+GYV   +
Sbjct: 90  DSLRVFEDIIDKNLISWNIFLKAFVRFGELERARDVFDEMPKRDVVSWNTMISGYVSFGL 149

Query: 151 MGEAIVLFEEMEE-------------------------------------RNVVTWTSMI 173
             +A   F EM++                                      NVV   S+I
Sbjct: 150 FDDAFRFFSEMQKAGIRPSGFTYSTLLSFVSSACRGKQIHASMIRNGVDLSNVVVGNSLI 209

Query: 174 SGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNC 233
             Y + G V+  + +F  M   ++ SW ++I     +G+   +L  F+ M+ +   G + 
Sbjct: 210 GMYGKFGVVDYAFGVFITMEELDITSWNSLIWSCGKSGYQNLALRQFVLMRSV---GYSP 266

Query: 234 NVQSCNSMINGYIRFGRLEEAQNLFDTVPVR-----DEISWTSMIDGYLSVGQVSNAYYL 288
           +  + +++I        LE+ + +F  + +R     + I  ++ ID +    ++ ++  +
Sbjct: 267 DQFTVSTVITVCSNLQDLEKGEQIF-ALCIRVGFLSNSIVSSASIDLFSKCNRLEDSVRV 325

Query: 289 FHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANI 348
           F  +   D+V   AMIS    +     A  LF+      + P   T S++  A      +
Sbjct: 326 FEEIYQWDSVLCNAMISSYAWHGFGENALQLFVLTLRENLRPTEFTLSIVLSAVSILLPV 385

Query: 349 DLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGF 408
           D G QIH +++K+  ESD+I+ + L+ MYAK G+ID+A   F+ + +RDL+SWN+M+MG 
Sbjct: 386 DQGSQIHSLVVKSGLESDVIVASSLVEMYAKFGLIDSAMKTFAKIGARDLISWNTMIMGL 445

Query: 409 SHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPG 468
           +++G  ++ L++F+ +L  G  P+ +T  G+L AC+  GLV  G  +F++M   Y + P 
Sbjct: 446 AYNGRVSKALEIFKELLIGGPPPDEITLAGVLLACNVGGLVDEGLSIFSSMEKEYGVIPA 505

Query: 469 PEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRL 528
            EHY  +++++ R GK+KEA + V  +P EP   IWG+LL AC    G+    E  A+R+
Sbjct: 506 IEHYACIVDMMSRGGKLKEAMDIVELMPHEPSGLIWGSLLCACEI-YGDLRFTERVAERV 564

Query: 529 LELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWL 576
           +EL+P ++  ++VL   Y   GR     ++R  M  KGVRKV GCSW+
Sbjct: 565 MELEPQSSLPYLVLAQAYEMRGRWESLVRVRRAMKEKGVRKVIGCSWI 612



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 68/228 (29%), Positives = 116/228 (50%), Gaps = 4/228 (1%)

Query: 230 GNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLF 289
           G N +    N  ++ Y + G   ++  +F+ +  ++ ISW   +  ++  G++  A  +F
Sbjct: 67  GFNTHTFLGNRCLDLYSQLGTGNDSLRVFEDIIDKNLISWNIFLKAFVRFGELERARDVF 126

Query: 290 HNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANID 349
             MP RD V+W  MISG V   LF +A   F EM+  G+ P   T+S L     +     
Sbjct: 127 DEMPKRDVVSWNTMISGYVSFGLFDDAFRFFSEMQKAGIRPSGFTYSTLLSFVSSACR-- 184

Query: 350 LGRQIHCVLMKTESE-SDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGF 408
            G+QIH  +++   + S++++ N LI MY K GV+D A+ +F  M   D+ SWNS++   
Sbjct: 185 -GKQIHASMIRNGVDLSNVVVGNSLIGMYGKFGVVDYAFGVFITMEELDITSWNSLIWSC 243

Query: 409 SHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELF 456
              G  N  L+ F  M   G  P+  T   +++ CS+   + +G ++F
Sbjct: 244 GKSGYQNLALRQFVLMRSVGYSPDQFTVSTVITVCSNLQDLEKGEQIF 291



 Score = 75.5 bits (184), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 87/376 (23%), Positives = 153/376 (40%), Gaps = 53/376 (14%)

Query: 7   PKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNV----VSYNAMLSGFLQN---GRLS 59
           PK  VV   + I+ Y   G  D+A   F  M +  +     +Y+ +LS F+ +   G+  
Sbjct: 130 PKRDVVSWNTMISGYVSFGLFDDAFRFFSEMQKAGIRPSGFTYSTLLS-FVSSACRGKQI 188

Query: 60  EARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGE 119
            A  +   +   NVV   ++I      G V  A  +F  M E ++ SWNS++    ++G 
Sbjct: 189 HASMIRNGVDLSNVVVGNSLIGMYGKFGVVDYAFGVFITMEELDITSWNSLIWSCGKSGY 248

Query: 120 LNEARKVFNSM------PIKNVISWNAMIAGYVECCMMGEAI--VLFEEMEERNVVTWTS 171
            N A + F  M      P +  +S    +   ++    GE I  +        N +  ++
Sbjct: 249 QNLALRQFVLMRSVGYSPDQFTVSTVITVCSNLQDLEKGEQIFALCIRVGFLSNSIVSSA 308

Query: 172 MISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEM-------- 223
            I  + +   +E+   +F  + + + V   AMI  +AW+GF + +L LF+          
Sbjct: 309 SIDLFSKCNRLEDSVRVFEEIYQWDSVLCNAMISSYAWHGFGENALQLFVLTLRENLRPT 368

Query: 224 ------------------KG------ICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFD 259
                             +G      +  +G   +V   +S++  Y +FG ++ A   F 
Sbjct: 369 EFTLSIVLSAVSILLPVDQGSQIHSLVVKSGLESDVIVASSLVEMYAKFGLIDSAMKTFA 428

Query: 260 TVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNM----PDRDAVAWTAMISGLVQNELFVE 315
            +  RD ISW +MI G    G+VS A  +F  +    P  D +    ++       L  E
Sbjct: 429 KIGARDLISWNTMIMGLAYNGRVSKALEIFKELLIGGPPPDEITLAGVLLACNVGGLVDE 488

Query: 316 ATYLFMEM-RAHGVPP 330
              +F  M + +GV P
Sbjct: 489 GLSIFSSMEKEYGVIP 504



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 50/227 (22%), Positives = 97/227 (42%), Gaps = 48/227 (21%)

Query: 324 RAHGVPPLNAT---FSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKC 380
           +AHG  PL  +   +S L        ++D  + +H  L+K    +   L N  + +Y++ 
Sbjct: 28  KAHG--PLATSLSYYSNLIEHCFLLKSLDYAKFVHAQLIKVGFNTHTFLGNRCLDLYSQL 85

Query: 381 GVIDNAYNIFSNMVSRDL-------------------------------VSWNSMVMGFS 409
           G  +++  +F +++ ++L                               VSWN+M+ G+ 
Sbjct: 86  GTGNDSLRVFEDIIDKNLISWNIFLKAFVRFGELERARDVFDEMPKRDVVSWNTMISGYV 145

Query: 410 HHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMF----DVYKI 465
             GL ++  + F  M ++G  P+  T+  +LS  S A    RG ++  +M     D+  +
Sbjct: 146 SFGLFDDAFRFFSEMQKAGIRPSGFTYSTLLSFVSSA---CRGKQIHASMIRNGVDLSNV 202

Query: 466 QPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACG 512
             G     S+I + G+ G +  A    + +  E D   W +L+ +CG
Sbjct: 203 VVGN----SLIGMYGKFGVVDYAFGVFITME-ELDITSWNSLIWSCG 244



 Score = 55.1 bits (131), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 38/133 (28%), Positives = 66/133 (49%), Gaps = 9/133 (6%)

Query: 8   KSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEE 67
           +S V+  +S +  Y+K G ID A   F  +  R+++S+N M+ G   NGR+S+A  +F+E
Sbjct: 401 ESDVIVASSLVEMYAKFGLIDSAMKTFAKIGARDLISWNTMIMGLAYNGRVSKALEIFKE 460

Query: 68  M----PERNVVSWTAMICGLADAGRVCEARKLFEEM-PERNVVS----WNSMVVGLIRNG 118
           +    P  + ++   ++      G V E   +F  M  E  V+     +  +V  + R G
Sbjct: 461 LLIGGPPPDEITLAGVLLACNVGGLVDEGLSIFSSMEKEYGVIPAIEHYACIVDMMSRGG 520

Query: 119 ELNEARKVFNSMP 131
           +L EA  +   MP
Sbjct: 521 KLKEAMDIVELMP 533



 Score = 47.8 bits (112), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 50/236 (21%), Positives = 109/236 (46%), Gaps = 18/236 (7%)

Query: 41  NVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLF---- 96
           N +  +A +  F +  RL ++ R+FEE+ + + V   AMI   A  G    A +LF    
Sbjct: 302 NSIVSSASIDLFSKCNRLEDSVRVFEEIYQWDSVLCNAMISSYAWHGFGENALQLFVLTL 361

Query: 97  ------EEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCM 150
                  E     V+S  S+++ + +  +++    V  S    +VI  ++++  Y +  +
Sbjct: 362 RENLRPTEFTLSIVLSAVSILLPVDQGSQIHSL--VVKSGLESDVIVASSLVEMYAKFGL 419

Query: 151 MGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRM----PRKNVVSWTAMIGG 206
           +  A+  F ++  R++++W +MI G    G V +   +F+ +    P  + ++   ++  
Sbjct: 420 IDSAMKTFAKIGARDLISWNTMIMGLAYNGRVSKALEIFKELLIGGPPPDEITLAGVLLA 479

Query: 207 FAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVP 262
               G   E L +F  M+   + G    ++    +++   R G+L+EA ++ + +P
Sbjct: 480 CNVGGLVDEGLSIFSSMEK--EYGVIPAIEHYACIVDMMSRGGKLKEAMDIVELMP 533


>gi|297729323|ref|NP_001177025.1| Os12g0577900 [Oryza sativa Japonica Group]
 gi|255670427|dbj|BAH95753.1| Os12g0577900, partial [Oryza sativa Japonica Group]
          Length = 614

 Score =  282 bits (721), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 167/505 (33%), Positives = 255/505 (50%), Gaps = 45/505 (8%)

Query: 91  EARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSM----PIKNVISWNAMIAGYV 146
           +A   F  MP R+  +++ ++  L   G +   R V + +     +++    NA+I  Y 
Sbjct: 116 DALAAFSAMPRRDSFTYSFLIKALSAAG-VAPVRAVHSHVVKLGSVEDTFVGNALIDAYS 174

Query: 147 ECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGG 206
           +     +A  +F+EM ER+VV+W + ++   R GE+     LF  MP K+ VSW      
Sbjct: 175 KNGGFSDARKVFDEMPERDVVSWNTAMAAMVREGELAGVRKLFDEMPEKDTVSW------ 228

Query: 207 FAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDE 266
                                           N++++GY + G +E A  LF  +P R+ 
Sbjct: 229 --------------------------------NTILDGYTKAGEVEAAFELFQRMPERNV 256

Query: 267 ISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAH 326
           +SW++M+ GY   G +  A  +F  MP ++ V WT M+S   Q  L  EA  LF +M+  
Sbjct: 257 VSWSTMVSGYCKKGDLEMARVIFDKMPSKNLVTWTIMVSACAQKGLVDEAGKLFAQMKEA 316

Query: 327 GVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNA 386
            V    A    +  A   + ++ LG++IH  + K        + N LI M+ KCG ++ A
Sbjct: 317 SVELDVAAVVSILAACAESGSLSLGKRIHRYVRKRNLGRSTHVCNALIDMFCKCGCVNRA 376

Query: 387 YNIF-SNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSH 445
             +F +  V +D VSWNS++ GF+ HG  ++ L++F  M + G +P++VT + +LSAC+H
Sbjct: 377 DYVFDTETVQKDSVSWNSIIGGFAMHGHGDKALELFAQMKQQGFNPDAVTMINVLSACTH 436

Query: 446 AGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWG 505
            G V  G   F+ M   Y I P  EHY  MI+LLGR G IKEA + +  +P+EP+  IWG
Sbjct: 437 MGFVDEGRRHFSNMERDYGIMPQIEHYGCMIDLLGRGGLIKEAVDLIKSMPWEPNEVIWG 496

Query: 506 ALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLK 565
           +LL AC     N E AE A   L +L P NA  + VL NIYA +G+  +  K RM M   
Sbjct: 497 SLLSACRL-HKNVEYAEIAVNELSKLQPSNAGNYAVLSNIYAEAGQWSDMAKARMQMKGT 555

Query: 566 GVRKVPGCSWLMRNGGIQMFLSGDK 590
           G +K  G SW+  N     F  GD+
Sbjct: 556 GSQKTAGSSWVELNETFHEFTVGDR 580



 Score =  182 bits (463), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 116/380 (30%), Positives = 197/380 (51%), Gaps = 16/380 (4%)

Query: 25  GFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWT----AMI 80
           G   +A A F  MP+R+  +Y+ ++      G ++  R +   + +   V  T    A+I
Sbjct: 112 GAPRDALAAFSAMPRRDSFTYSFLIKALSAAG-VAPVRAVHSHVVKLGSVEDTFVGNALI 170

Query: 81  CGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNA 140
              +  G   +ARK+F+EMPER+VVSWN+ +  ++R GEL   RK+F+ MP K+ +SWN 
Sbjct: 171 DAYSKNGGFSDARKVFDEMPERDVVSWNTAMAAMVREGELAGVRKLFDEMPEKDTVSWNT 230

Query: 141 MIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSW 200
           ++ GY +   +  A  LF+ M ERNVV+W++M+SGYC+ G++E    +F +MP KN+V+W
Sbjct: 231 ILDGYTKAGEVEAAFELFQRMPERNVVSWSTMVSGYCKKGDLEMARVIFDKMPSKNLVTW 290

Query: 201 TAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDT 260
           T M+   A  G   E+  LF +MK   +     +V +  S++      G L   + +   
Sbjct: 291 TIMVSACAQKGLVDEAGKLFAQMK---EASVELDVAAVVSILAACAESGSLSLGKRIHRY 347

Query: 261 VPVRDEISWT----SMIDGYLSVGQVSNAYYLFHNMP-DRDAVAWTAMISGLVQNELFVE 315
           V  R+    T    ++ID +   G V+ A Y+F      +D+V+W ++I G   +    +
Sbjct: 348 VRKRNLGRSTHVCNALIDMFCKCGCVNRADYVFDTETVQKDSVSWNSIIGGFAMHGHGDK 407

Query: 316 ATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILEN--CL 373
           A  LF +M+  G  P   T   +  A      +D GR+ H   M+ +      +E+  C+
Sbjct: 408 ALELFAQMKQQGFNPDAVTMINVLSACTHMGFVDEGRR-HFSNMERDYGIMPQIEHYGCM 466

Query: 374 ISMYAKCGVIDNAYNIFSNM 393
           I +  + G+I  A ++  +M
Sbjct: 467 IDLLGRGGLIKEAVDLIKSM 486



 Score =  158 bits (399), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 100/335 (29%), Positives = 168/335 (50%), Gaps = 49/335 (14%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWT 77
           I  YSK G   +A+ +F  MP+R+VVS+N  ++  ++ G L+  R+LF+EMPE++ VSW 
Sbjct: 170 IDAYSKNGGFSDARKVFDEMPERDVVSWNTAMAAMVREGELAGVRKLFDEMPEKDTVSWN 229

Query: 78  AMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVIS 137
            ++ G   AG V  A +LF+ MPERNVVSW++MV G  + G+L  AR +F+ MP KN+++
Sbjct: 230 TILDGYTKAGEVEAAFELFQRMPERNVVSWSTMVSGYCKKGDLEMARVIFDKMPSKNLVT 289

Query: 138 WNAMIAGYVECCMMGEAIVLFEEMEE---------------------------------- 163
           W  M++   +  ++ EA  LF +M+E                                  
Sbjct: 290 WTIMVSACAQKGLVDEAGKLFAQMKEASVELDVAAVVSILAACAESGSLSLGKRIHRYVR 349

Query: 164 -----RNVVTWTSMISGYCRAGEVEEG-YCLFRRMPRKNVVSWTAMIGGFAWNGFHKESL 217
                R+     ++I  +C+ G V    Y       +K+ VSW ++IGGFA +G   ++L
Sbjct: 350 KRNLGRSTHVCNALIDMFCKCGCVNRADYVFDTETVQKDSVSWNSIIGGFAMHGHGDKAL 409

Query: 218 LLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVP----VRDEIS-WTSM 272
            LF +MK     G N +  +  ++++     G ++E +  F  +     +  +I  +  M
Sbjct: 410 ELFAQMK---QQGFNPDAVTMINVLSACTHMGFVDEGRRHFSNMERDYGIMPQIEHYGCM 466

Query: 273 IDGYLSVGQVSNAYYLFHNMP-DRDAVAWTAMISG 306
           ID     G +  A  L  +MP + + V W +++S 
Sbjct: 467 IDLLGRGGLIKEAVDLIKSMPWEPNEVIWGSLLSA 501


>gi|302782173|ref|XP_002972860.1| hypothetical protein SELMODRAFT_98704 [Selaginella moellendorffii]
 gi|300159461|gb|EFJ26081.1| hypothetical protein SELMODRAFT_98704 [Selaginella moellendorffii]
          Length = 509

 Score =  281 bits (720), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 156/514 (30%), Positives = 270/514 (52%), Gaps = 16/514 (3%)

Query: 37  MPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLF 96
           MP  ++VS N  L+     G L  A++ F+ MP+R++ SW +++    +      A  +F
Sbjct: 1   MPFWDLVSLNTALAAL---GHLESAKQFFDSMPQRDIFSWNSIVQACVEDDIADLAALVF 57

Query: 97  EEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIV 156
             MP R++VSWNS++   I+  +   A ++    P  +V + N  I  Y     +  A  
Sbjct: 58  NRMPNRSLVSWNSLIQVRIQQTQCARALELLEEAPEFDVFTCNLAIQTYTGLGEIQFARE 117

Query: 157 LFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKES 216
            F+ M++R++VTW +M+  + + G++ +   ++  MP+ N V+ TAM+  ++       +
Sbjct: 118 FFDSMDQRDIVTWATMLVAHSQHGDLPQANSVYENMPQHNAVAGTAMLVAYSNTSNLPSA 177

Query: 217 LLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGY 276
           + +F +M  +       ++ + N+M+  Y   G +   +   + +P+ D  SW S +  Y
Sbjct: 178 IHIFKKMPEL-------DIFAWNAMLVAYAASGNISSLEKFLNKMPMLDICSWNSTLQAY 230

Query: 277 LSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFS 336
              G +  A  +F +MP RD + W +MI+G  Q   +  A  LF  M   G+ P  AT+S
Sbjct: 231 GWYGYLGKAKSVFDSMPQRDLITWNSMIAGYTQAREWNLALMLFGSMDQEGISPDTATYS 290

Query: 337 VLFGAAGATANIDLGRQIHCVLMKTESES---DLILENCLISMYAKCGVIDNA-YNIFSN 392
            +F A G    +  GR +H +L +         L +   L+SMY KCG +D A   +F  
Sbjct: 291 SVFYACGEHGAVTQGRILHSLLEEAPDREILESLAISAALVSMYGKCGCLDEARQKLFGE 350

Query: 393 MV-SRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSR 451
              +RD   WNSM+  ++ +G   E +++F +M   G  P+ VTF+ +L+ACSHAG + R
Sbjct: 351 YPGNRDRNWWNSMLTAYARNGHHREVVRLFRAMDLDGVPPDGVTFVTLLAACSHAGDLQR 410

Query: 452 GWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGAC 511
           G   F AM ++Y + PG  HY  + +LL R G+++ AE  +  +P+EP    W ++LGAC
Sbjct: 411 GAACFAAMAELYGVAPGAGHYACLADLLSRLGQLERAENVIHAMPYEPGPAAWTSVLGAC 470

Query: 512 GFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNI 545
           G   G A+ A  AA+  L+ +P  + ++V+L N+
Sbjct: 471 G-SHGTADRARDAARYALDAEPRGSSSYVLLSNV 503



 Score =  148 bits (373), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 108/430 (25%), Positives = 187/430 (43%), Gaps = 41/430 (9%)

Query: 7   PKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFE 66
           P+  V     +I  Y+  G I  A+  F  M QR++V++  ML    Q+G L +A  ++E
Sbjct: 92  PEFDVFTCNLAIQTYTGLGEIQFAREFFDSMDQRDIVTWATMLVAHSQHGDLPQANSVYE 151

Query: 67  EMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKV 126
            MP+ N V+ TAM+   ++   +  A  +F++MPE ++ +WN+M+V    +G ++   K 
Sbjct: 152 NMPQHNAVAGTAMLVAYSNTSNLPSAIHIFKKMPELDIFAWNAMLVAYAASGNISSLEKF 211

Query: 127 FNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGY 186
            N MP+ ++ SWN+ +  Y     +G+A  +F+ M +R+++TW SMI+GY +A E     
Sbjct: 212 LNKMPMLDICSWNSTLQAYGWYGYLGKAKSVFDSMPQRDLITWNSMIAGYTQAREWNLAL 271

Query: 187 CLFRRMPRKNVVSWTAMIGGFAW----NGFHKESLLLFIEMKGICDNGNNCNVQSCNSMI 242
            LF  M ++ +   TA      +    +G   +  +L   ++   D     ++    +++
Sbjct: 272 MLFGSMDQEGISPDTATYSSVFYACGEHGAVTQGRILHSLLEEAPDREILESLAISAALV 331

Query: 243 NGYIRFGRLEEA-QNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWT 301
           + Y + G L+EA Q LF   P   + +W                              W 
Sbjct: 332 SMYGKCGCLDEARQKLFGEYPGNRDRNW------------------------------WN 361

Query: 302 AMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKT 361
           +M++   +N    E   LF  M   GVPP   TF  L  A       DL R   C     
Sbjct: 362 SMLTAYARNGHHREVVRLFRAMDLDGVPPDGVTFVTLLAACSHAG--DLQRGAACFAAMA 419

Query: 362 E---SESDLILENCLISMYAKCGVIDNAYNIFSNM-VSRDLVSWNSMVMGFSHHGLANET 417
           E            CL  + ++ G ++ A N+   M       +W S++     HG A+  
Sbjct: 420 ELYGVAPGAGHYACLADLLSRLGQLERAENVIHAMPYEPGPAAWTSVLGACGSHGTADRA 479

Query: 418 LKVFESMLES 427
                  L++
Sbjct: 480 RDAARYALDA 489



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 78/321 (24%), Positives = 151/321 (47%), Gaps = 26/321 (8%)

Query: 5   NHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRL 64
           N P+   V  T+ +  YS    +  A  +F+ MP+ ++ ++NAML  +  +G +S   + 
Sbjct: 152 NMPQHNAVAGTAMLVAYSNTSNLPSAIHIFKKMPELDIFAWNAMLVAYAASGNISSLEKF 211

Query: 65  FEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEAR 124
             +MP  ++ SW + +      G + +A+ +F+ MP+R++++WNSM+ G  +  E N A 
Sbjct: 212 LNKMPMLDICSWNSTLQAYGWYGYLGKAKSVFDSMPQRDLITWNSMIAGYTQAREWNLAL 271

Query: 125 KVFNSMPIKNVISWNAMIAGYVECCMMGEAIV-------LFEEMEERNVV----TWTSMI 173
            +F SM  + +    A  +     C    A+        L EE  +R ++       +++
Sbjct: 272 MLFGSMDQEGISPDTATYSSVFYACGEHGAVTQGRILHSLLEEAPDREILESLAISAALV 331

Query: 174 SGYCRAGEVEEG-YCLFRRMP-RKNVVSWTAMIGGFAWNGFHKESLLLF--IEMKGICDN 229
           S Y + G ++E    LF   P  ++   W +M+  +A NG H+E + LF  +++ G+  +
Sbjct: 332 SMYGKCGCLDEARQKLFGEYPGNRDRNWWNSMLTAYARNGHHREVVRLFRAMDLDGVPPD 391

Query: 230 GNN--CNVQSCN---SMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSN 284
           G      + +C+    +  G   F  + E   L+   P      +  + D    +GQ+  
Sbjct: 392 GVTFVTLLAACSHAGDLQRGAACFAAMAE---LYGVAPGAGH--YACLADLLSRLGQLER 446

Query: 285 AYYLFHNMP-DRDAVAWTAMI 304
           A  + H MP +    AWT+++
Sbjct: 447 AENVIHAMPYEPGPAAWTSVL 467


>gi|345505206|gb|AEN99827.1| chlororespiratory reduction 4, partial [Aethionema grandiflorum]
          Length = 594

 Score =  281 bits (720), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 158/458 (34%), Positives = 255/458 (55%), Gaps = 16/458 (3%)

Query: 139 NAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPR--KN 196
           N +I  Y++C  +G A  +F+ M +R+ V++ SMI GY + G ++  + LF  MPR  KN
Sbjct: 140 NCLIGLYLKCGCLGFARQVFDRMPQRDSVSYNSMIDGYVKCGLMKSAHKLFDLMPREIKN 199

Query: 197 VVSWTAMIGGFAW--NGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEA 254
           ++SW +MI G+A   +G +  S L F EM          ++ S NSMING ++ GR+E+A
Sbjct: 200 LISWNSMISGYAQTADGLNTASKL-FSEMP-------EKDLISWNSMINGCVKHGRIEDA 251

Query: 255 QNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFV 314
           + LFD +P RD ++W +MIDGY  +G V +A  LF  M  RD VA  +M++G VQN+  +
Sbjct: 252 KGLFDVMPRRDVVTWATMIDGYAKLGFVHHAKSLFDQMHQRDVVACNSMMAGYVQNKYHM 311

Query: 315 EATYLF--MEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENC 372
           EA  +F  ME  +H + P   T  ++  A      +     +H  +++        L   
Sbjct: 312 EALEIFNDMEKDSH-LSPDETTLVIVLSAIAQLGRLSKAMSMHVYIVEKRFPLGGKLGVA 370

Query: 373 LISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPN 432
           LI M++KCG I +A ++F  + ++ +  WN+M+ G + HGL      +   +      P+
Sbjct: 371 LIDMHSKCGSIQHAISVFEGIENKSIDHWNAMIGGLAIHGLGELAFDMLMQIERCSIQPD 430

Query: 433 SVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFV 492
            +TF+G+L+ACSH+GLV  G   F  M   + I+P  +HY  ++++L R+G I+ A+  +
Sbjct: 431 XITFIGVLNACSHSGLVKEGLLCFELMRRKHXIEPRLQHYGCLVDVLSRSGSIELAKHLI 490

Query: 493 LRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRH 552
             +P EP+  IW + L AC   E   E  E  AK L+     N  ++V+L N+YA+ G  
Sbjct: 491 EDMPMEPNDVIWRSFLSACSTHE-EFETGELVAKHLILQAGYNPSSYVLLSNMYASLGMW 549

Query: 553 VEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDK 590
            +  ++RM M  + + K+PGCSW+  +G +  F   DK
Sbjct: 550 KDVRRVRMMMKQRKLHKIPGCSWIELDGNVHEFFVQDK 587



 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 120/410 (29%), Positives = 219/410 (53%), Gaps = 18/410 (4%)

Query: 46  NAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPE--RN 103
           N ++  +L+ G L  AR++F+ MP+R+ VS+ +MI G    G +  A KLF+ MP   +N
Sbjct: 140 NCLIGLYLKCGCLGFARQVFDRMPQRDSVSYNSMIDGYVKCGLMKSAHKLFDLMPREIKN 199

Query: 104 VVSWNSMVVGLIRNGE-LNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEME 162
           ++SWNSM+ G  +  + LN A K+F+ MP K++ISWN+MI G V+   + +A  LF+ M 
Sbjct: 200 LISWNSMISGYAQTADGLNTASKLFSEMPEKDLISWNSMINGCVKHGRIEDAKGLFDVMP 259

Query: 163 ERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIE 222
            R+VVTW +MI GY + G V     LF +M +++VV+  +M+ G+  N +H E+L +F +
Sbjct: 260 RRDVVTWATMIDGYAKLGFVHHAKSLFDQMHQRDVVACNSMMAGYVQNKYHMEALEIFND 319

Query: 223 MKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTV-----PVRDEISWTSMIDGYL 277
           M+   D+  + +  +   +++   + GRL +A ++   +     P+  ++   ++ID + 
Sbjct: 320 MEK--DSHLSPDETTLVIVLSAIAQLGRLSKAMSMHVYIVEKRFPLGGKLG-VALIDMHS 376

Query: 278 SVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSV 337
             G + +A  +F  + ++    W AMI GL  + L   A  + M++    + P   TF  
Sbjct: 377 KCGSIQHAISVFEGIENKSIDHWNAMIGGLAIHGLGELAFDMLMQIERCSIQPDXITFIG 436

Query: 338 LFGAAGATANIDLGRQIHCV-LMKTESESDLILEN--CLISMYAKCGVIDNAYNIFSNM- 393
           +  A   +  +  G  + C  LM+ +   +  L++  CL+ + ++ G I+ A ++  +M 
Sbjct: 437 VLNACSHSGLVKEG--LLCFELMRRKHXIEPRLQHYGCLVDVLSRSGSIELAKHLIEDMP 494

Query: 394 VSRDLVSWNSMVMGFS-HHGLANETLKVFESMLESGTHPNSVTFLGILSA 442
           +  + V W S +   S H       L     +L++G +P+S   L  + A
Sbjct: 495 MEPNDVIWRSFLSACSTHEEFETGELVAKHLILQAGYNPSSYVLLSNMYA 544



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 76/306 (24%), Positives = 159/306 (51%), Gaps = 26/306 (8%)

Query: 27  IDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADA 86
           ++ A  LF  MP+++++S+N+M++G +++GR+ +A+ LF+ MP R+VV+W  MI G A  
Sbjct: 217 LNTASKLFSEMPEKDLISWNSMINGCVKHGRIEDAKGLFDVMPRRDVVTWATMIDGYAKL 276

Query: 87  GRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNA-----M 141
           G V  A+ LF++M +R+VV+ NSM+ G ++N    EA ++FN M   + +S +      +
Sbjct: 277 GFVHHAKSLFDQMHQRDVVACNSMMAGYVQNKYHMEALEIFNDMEKDSHLSPDETTLVIV 336

Query: 142 IAGYVECCMMGEAIVLFEEMEERNV----VTWTSMISGYCRAGEVEEGYCLFRRMPRKNV 197
           ++   +   + +A+ +   + E+          ++I  + + G ++    +F  +  K++
Sbjct: 337 LSAIAQLGRLSKAMSMHVYIVEKRFPLGGKLGVALIDMHSKCGSIQHAISVFEGIENKSI 396

Query: 198 VSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQ----SCNSMINGYIRFGRLEE 253
             W AMIGG A +G  + +  + ++++        C++Q    +   ++N     G ++E
Sbjct: 397 DHWNAMIGGLAIHGLGELAFDMLMQIE-------RCSIQPDXITFIGVLNACSHSGLVKE 449

Query: 254 AQNLFDTVPVRDEIS-----WTSMIDGYLSVGQVSNAYYLFHNMP-DRDAVAWTAMISGL 307
               F+ +  +  I      +  ++D     G +  A +L  +MP + + V W + +S  
Sbjct: 450 GLLCFELMRRKHXIEPRLQHYGCLVDVLSRSGSIELAKHLIEDMPMEPNDVIWRSFLSAC 509

Query: 308 VQNELF 313
             +E F
Sbjct: 510 STHEEF 515



 Score = 92.0 bits (227), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 68/282 (24%), Positives = 144/282 (51%), Gaps = 18/282 (6%)

Query: 7   PKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFE 66
           P+  ++   S I    K G I++AK LF +MP+R+VV++  M+ G+ + G +  A+ LF+
Sbjct: 228 PEKDLISWNSMINGCVKHGRIEDAKGLFDVMPRRDVVTWATMIDGYAKLGFVHHAKSLFD 287

Query: 67  EMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRN-----GELN 121
           +M +R+VV+  +M+ G        EA ++F +M + + +S +   + ++ +     G L+
Sbjct: 288 QMHQRDVVACNSMMAGYVQNKYHMEALEIFNDMEKDSHLSPDETTLVIVLSAIAQLGRLS 347

Query: 122 EARK-----VFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGY 176
           +A       V    P+   +   A+I  + +C  +  AI +FE +E +++  W +MI G 
Sbjct: 348 KAMSMHVYIVEKRFPLGGKLGV-ALIDMHSKCGSIQHAISVFEGIENKSIDHWNAMIGGL 406

Query: 177 CRAGEVEEGYCLFRRMPRKNV----VSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNN 232
              G  E  + +  ++ R ++    +++  ++   + +G  KE LL F  M+    +   
Sbjct: 407 AIHGLGELAFDMLMQIERCSIQPDXITFIGVLNACSHSGLVKEGLLCFELMRR--KHXIE 464

Query: 233 CNVQSCNSMINGYIRFGRLEEAQNLFDTVPVR-DEISWTSMI 273
             +Q    +++   R G +E A++L + +P+  +++ W S +
Sbjct: 465 PRLQHYGCLVDVLSRSGSIELAKHLIEDMPMEPNDVIWRSFL 506



 Score = 78.6 bits (192), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 84/285 (29%), Positives = 128/285 (44%), Gaps = 25/285 (8%)

Query: 286 YYL--FHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAG 343
           YYL  F      D   W A+I           A  LF  M  +GV     + S++  A  
Sbjct: 53  YYLCSFSAGEGEDPYLWNAVIKSYSHGIDPRRALLLFCLMIENGVCVDKFSLSLVLKACS 112

Query: 344 ATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNS 403
               +  G QIH  L KT   SDL L+NCLI +Y KCG +  A  +F  M  RD VS+NS
Sbjct: 113 RLEFLKEGMQIHGFLRKTGIWSDLFLQNCLIGLYLKCGCLGFARQVFDRMPQRDSVSYNS 172

Query: 404 MVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSH-AGLVSRGWELFNAMFDV 462
           M+ G+   GL     K+F+ M       N +++  ++S  +  A  ++   +LF+ M + 
Sbjct: 173 MIDGYVKCGLMKSAHKLFDLMPREIK--NLISWNSMISGYAQTADGLNTASKLFSEMPEK 230

Query: 463 YKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIA- 521
             I      + SMIN   + G+I++A+     +P   D   W  ++      +G A++  
Sbjct: 231 DLIS-----WNSMINGCVKHGRIEDAKGLFDVMP-RRDVVTWATMI------DGYAKLGF 278

Query: 522 EHAAKRLLELDPLNAPAHVVLCNI----YAASGRHVEEHKLRMDM 562
            H AK L   D ++    VV CN     Y  +  H+E  ++  DM
Sbjct: 279 VHHAKSL--FDQMHQ-RDVVACNSMMAGYVQNKYHMEALEIFNDM 320


>gi|414884999|tpg|DAA61013.1| TPA: hypothetical protein ZEAMMB73_343744 [Zea mays]
          Length = 557

 Score =  281 bits (720), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 154/470 (32%), Positives = 250/470 (53%), Gaps = 42/470 (8%)

Query: 108 NSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVV 167
           NS++   + +G    AR++   +P  + ++WN ++  ++   ++  A  LF+EM ER++V
Sbjct: 125 NSLLSLYLSHGSTASARRLLADIPRPDTVTWNTLLRSFLRMGLLPAARRLFDEMPERDLV 184

Query: 168 TWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGIC 227
           T+ SM+SGY   G++     LF  MP ++VV+W                           
Sbjct: 185 TYNSMLSGYAAEGDIANARELFDGMPERDVVTW--------------------------- 217

Query: 228 DNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYY 287
                      NSM+ GY + G +E A+ LFD +PVRD +SW SM+DGY   G +     
Sbjct: 218 -----------NSMLAGYAQRGDMESAKRLFDVMPVRDVVSWNSMLDGYAQTGDIEMTRM 266

Query: 288 LFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRA-HGVPPLNATFSVLFGAAGATA 346
           +F  MP R  V+W  +++   + + + E   LF  M A  G  P   TF  +  A G   
Sbjct: 267 VFDGMPRRSTVSWNVVLALYAKVKDWHECLNLFDAMMAVGGSKPNEKTFVSVLTACGHLG 326

Query: 347 NIDLGRQIHCVLMKTESE--SDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSM 404
           +++ GR +H ++ ++      D++L   +++MYAKCGV+  A  IF  M  R + SWNSM
Sbjct: 327 DLERGRWVHHLVHESWERLLPDVLLLTAMMTMYAKCGVMGTAKEIFDLMTERSVASWNSM 386

Query: 405 VMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYK 464
           ++G+  HG + + L++F  M ++G  PN  TF+ ILS+C+H GLV  GW  F+ M   Y 
Sbjct: 387 IIGYGLHGYSEKALELFMEMEKNGPQPNETTFICILSSCAHGGLVLEGWWCFDRMVRFYN 446

Query: 465 IQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHA 524
           I+P  EH+  M++LLGRAG ++++E  +  L  +    +WGAL+ A    + ++++ E  
Sbjct: 447 IEPKAEHFGCMMDLLGRAGLLRDSENLINNLQAKVSPALWGALISASR-TQDSSKLGEFI 505

Query: 525 AKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCS 574
             +L+E+ P    ++V+L NIYA  GR  +  K+R  M  K V K  G S
Sbjct: 506 GTKLIEMKPTEFSSYVLLSNIYATEGRWDDVEKVRKVMKEKVVEKDVGMS 555



 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 105/362 (29%), Positives = 190/362 (52%), Gaps = 17/362 (4%)

Query: 46  NAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVV 105
           N++LS +L +G  + ARRL  ++P  + V+W  ++      G +  AR+LF+EMPER++V
Sbjct: 125 NSLLSLYLSHGSTASARRLLADIPRPDTVTWNTLLRSFLRMGLLPAARRLFDEMPERDLV 184

Query: 106 SWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERN 165
           ++NSM+ G    G++  AR++F+ MP ++V++WN+M+AGY +   M  A  LF+ M  R+
Sbjct: 185 TYNSMLSGYAAEGDIANARELFDGMPERDVVTWNSMLAGYAQRGDMESAKRLFDVMPVRD 244

Query: 166 VVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKG 225
           VV+W SM+ GY + G++E    +F  MPR++ VSW  ++  +A      E L LF  M  
Sbjct: 245 VVSWNSMLDGYAQTGDIEMTRMVFDGMPRRSTVSWNVVLALYAKVKDWHECLNLFDAMMA 304

Query: 226 ICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVP------VRDEISWTSMIDGYLSV 279
           +   G+  N ++  S++      G LE  + +   V       + D +  T+M+  Y   
Sbjct: 305 V--GGSKPNEKTFVSVLTACGHLGDLERGRWVHHLVHESWERLLPDVLLLTAMMTMYAKC 362

Query: 280 GQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLF 339
           G +  A  +F  M +R   +W +MI G   +    +A  LFMEM  +G  P   TF  + 
Sbjct: 363 GVMGTAKEIFDLMTERSVASWNSMIIGYGLHGYSEKALELFMEMEKNGPQPNETTFICIL 422

Query: 340 GAAGATANIDLG-----RQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMV 394
            +      +  G     R +    ++ ++E       C++ +  + G++ ++ N+ +N+ 
Sbjct: 423 SSCAHGGLVLEGWWCFDRMVRFYNIEPKAEH----FGCMMDLLGRAGLLRDSENLINNLQ 478

Query: 395 SR 396
           ++
Sbjct: 479 AK 480



 Score =  152 bits (385), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 101/350 (28%), Positives = 176/350 (50%), Gaps = 55/350 (15%)

Query: 7   PKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFE 66
           P+   V   + +  + + G +  A+ LF  MP+R++V+YN+MLSG+   G ++ AR LF+
Sbjct: 148 PRPDTVTWNTLLRSFLRMGLLPAARRLFDEMPERDLVTYNSMLSGYAAEGDIANARELFD 207

Query: 67  EMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKV 126
            MPER+VV+W +M+ G A  G +  A++LF+ MP R+VVSWNSM+ G  + G++   R V
Sbjct: 208 GMPERDVVTWNSMLAGYAQRGDMESAKRLFDVMPVRDVVSWNSMLDGYAQTGDIEMTRMV 267

Query: 127 FNSMPIKNVISWNAMIAGYV------ECCMMGEAIV------------------------ 156
           F+ MP ++ +SWN ++A Y       EC  + +A++                        
Sbjct: 268 FDGMPRRSTVSWNVVLALYAKVKDWHECLNLFDAMMAVGGSKPNEKTFVSVLTACGHLGD 327

Query: 157 ---------LFEEMEER---NVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMI 204
                    L  E  ER   +V+  T+M++ Y + G +     +F  M  ++V SW +MI
Sbjct: 328 LERGRWVHHLVHESWERLLPDVLLLTAMMTMYAKCGVMGTAKEIFDLMTERSVASWNSMI 387

Query: 205 GGFAWNGFHKESLLLFIEMKGICDNGNN----CNVQSCNS---MINGYIRFGRLEEAQNL 257
            G+  +G+ +++L LF+EM+      N     C + SC     ++ G+  F R+      
Sbjct: 388 IGYGLHGYSEKALELFMEMEKNGPQPNETTFICILSSCAHGGLVLEGWWCFDRM---VRF 444

Query: 258 FDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVA-WTAMISG 306
           ++  P  +      M+D     G + ++  L +N+  + + A W A+IS 
Sbjct: 445 YNIEPKAEHFG--CMMDLLGRAGLLRDSENLINNLQAKVSPALWGALISA 492



 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 70/292 (23%), Positives = 141/292 (48%), Gaps = 14/292 (4%)

Query: 234 NVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMP 293
           +++  NS+++ Y+  G    A+ L   +P  D ++W +++  +L +G +  A  LF  MP
Sbjct: 120 DLRLANSLLSLYLSHGSTASARRLLADIPRPDTVTWNTLLRSFLRMGLLPAARRLFDEMP 179

Query: 294 DRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQ 353
           +RD V + +M+SG         A  LF  M    V     T++ +        +++  ++
Sbjct: 180 ERDLVTYNSMLSGYAAEGDIANARELFDGMPERDV----VTWNSMLAGYAQRGDMESAKR 235

Query: 354 IHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGL 413
           +  V+       D++  N ++  YA+ G I+    +F  M  R  VSWN ++  ++    
Sbjct: 236 LFDVM----PVRDVVSWNSMLDGYAQTGDIEMTRMVFDGMPRRSTVSWNVVLALYAKVKD 291

Query: 414 ANETLKVFESMLE-SGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVY-KIQPGPEH 471
            +E L +F++M+   G+ PN  TF+ +L+AC H G + RG  + + + + + ++ P    
Sbjct: 292 WHECLNLFDAMMAVGGSKPNEKTFVSVLTACGHLGDLERGRWVHHLVHESWERLLPDVLL 351

Query: 472 YVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALL---GACGFCEGNAEI 520
             +M+ +  + G +  A+E +  L  E     W +++   G  G+ E   E+
Sbjct: 352 LTAMMTMYAKCGVMGTAKE-IFDLMTERSVASWNSMIIGYGLHGYSEKALEL 402



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 40/148 (27%), Positives = 69/148 (46%), Gaps = 18/148 (12%)

Query: 365 SDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESM 424
           SDL L N L+S+Y   G   +A  + +++   D V+WN+++  F   GL     ++F+ M
Sbjct: 119 SDLRLANSLLSLYLSHGSTASARRLLADIPRPDTVTWNTLLRSFLRMGLLPAARRLFDEM 178

Query: 425 LESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYV----SMINLLG 480
            E     + VT+  +LS  +  G ++   ELF+ M         PE  V    SM+    
Sbjct: 179 PER----DLVTYNSMLSGYAAEGDIANARELFDGM---------PERDVVTWNSMLAGYA 225

Query: 481 RAGKIKEAEEFVLRLPFEPDHRIWGALL 508
           + G ++ A+     +P   D   W ++L
Sbjct: 226 QRGDMESAKRLFDVMPVR-DVVSWNSML 252


>gi|6723387|emb|CAB66396.1| putative protein [Arabidopsis thaliana]
          Length = 1113

 Score =  281 bits (720), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 195/633 (30%), Positives = 320/633 (50%), Gaps = 63/633 (9%)

Query: 16  SSITKYSKRGFIDEAKALFQLMP---QRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERN 72
           S I+ YSK G   +A+ +F+ M    +R+VVS++AM++ +  NGR  +A ++F E  E  
Sbjct: 102 SLISLYSKSGDSAKAEDVFETMRRFGKRDVVSWSAMMACYGNNGRELDAIKVFVEFLELG 161

Query: 73  VVS----WTAMI--CGLAD---AGRVC--------------------------------E 91
           +V     +TA+I  C  +D    GRV                                  
Sbjct: 162 LVPNDYCYTAVIRACSNSDFVGVGRVTLGFLMKTGHFESDVCVGCSLIDMFVKGENSFEN 221

Query: 92  ARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMM 151
           A K+F++M E NVV+W  M+   ++ G   EA + F  M +    S    ++     C  
Sbjct: 222 AYKVFDKMSELNVVTWTLMITRCMQMGFPREAIRFFLDMVLSGFESDKFTLSSVFSACAE 281

Query: 152 GEAIVLFEEMEERNVVTW------TSMISGYCRA---GEVEEGYCLFRRMPRKNVVSWTA 202
            E + L +++    + +        S++  Y +    G V++   +F RM   +V+SWTA
Sbjct: 282 LENLSLGKQLHSWAIRSGLVDDVECSLVDMYAKCSADGSVDDCRKVFDRMEDHSVMSWTA 341

Query: 203 MIGGFAWN-GFHKESLLLFIEM--KGICDNGN---NCNVQSCNSMINGYIRFGRLEEAQN 256
           +I G+  N     E++ LF EM  +G  +  +   +   ++C ++ +   R G+    Q 
Sbjct: 342 LITGYMKNCNLATEAINLFSEMITQGHVEPNHFTFSSAFKACGNLSDP--RVGKQVLGQA 399

Query: 257 LFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEA 316
               +     ++  S+I  ++   ++ +A   F ++ +++ V++   + G  +N  F +A
Sbjct: 400 FKRGLASNSSVA-NSVISMFVKSDRMEDAQRAFESLSEKNLVSYNTFLDGTCRNLNFEQA 458

Query: 317 TYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISM 376
             L  E+    +     TF+ L        +I  G QIH  ++K     +  + N LISM
Sbjct: 459 FKLLSEITERELGVSAFTFASLLSGVANVGSIRKGEQIHSQVVKLGLSCNQPVCNALISM 518

Query: 377 YAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTF 436
           Y+KCG ID A  +F+ M +R+++SW SM+ GF+ HG A   L+ F  M+E G  PN VT+
Sbjct: 519 YSKCGSIDTASRVFNFMENRNVISWTSMITGFAKHGFAIRVLETFNQMIEEGVKPNEVTY 578

Query: 437 LGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLP 496
           + ILSACSH GLVS GW  FN+M++ +KI+P  EHY  M++LL RAG + +A EF+  +P
Sbjct: 579 VAILSACSHVGLVSEGWRHFNSMYEDHKIKPKMEHYACMVDLLCRAGLLTDAFEFINTMP 638

Query: 497 FEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEH 556
           F+ D  +W   LGAC     N E+ + AA+++LELDP    A++ L NIYA +G+  E  
Sbjct: 639 FQADVLVWRTFLGACR-VHSNTELGKLAARKILELDPNEPAAYIQLSNIYACAGKWEEST 697

Query: 557 KLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGD 589
           ++R  M  + + K  GCSW+     I  F  GD
Sbjct: 698 EMRRKMKERNLVKEGGCSWIEVGDKIHKFYVGD 730



 Score =  112 bits (279), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 85/312 (27%), Positives = 151/312 (48%), Gaps = 19/312 (6%)

Query: 163 ERNVVTWTSMISGYCRAGE---VEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLL 219
           E + V + S+IS Y ++G+    E+ +   RR  +++VVSW+AM+  +  NG   +++ +
Sbjct: 94  EPDSVLYNSLISLYSKSGDSAKAEDVFETMRRFGKRDVVSWSAMMACYGNNGRELDAIKV 153

Query: 220 FIEMK--GICDNGN--NCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDG 275
           F+E    G+  N       +++C++  + ++  GR+     +       D     S+ID 
Sbjct: 154 FVEFLELGLVPNDYCYTAVIRACSN--SDFVGVGRVTLGFLMKTGHFESDVCVGCSLIDM 211

Query: 276 YLSVGQVS--NAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNA 333
           ++  G+ S  NAY +F  M + + V WT MI+  +Q     EA   F++M   G      
Sbjct: 212 FVK-GENSFENAYKVFDKMSELNVVTWTLMITRCMQMGFPREAIRFFLDMVLSGFESDKF 270

Query: 334 TFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKC---GVIDNAYNIF 390
           T S +F A     N+ LG+Q+H   +++    D  +E  L+ MYAKC   G +D+   +F
Sbjct: 271 TLSSVFSACAELENLSLGKQLHSWAIRSGLVDD--VECSLVDMYAKCSADGSVDDCRKVF 328

Query: 391 SNMVSRDLVSWNSMVMGFSHH-GLANETLKVFESMLESG-THPNSVTFLGILSACSHAGL 448
             M    ++SW +++ G+  +  LA E + +F  M+  G   PN  TF     AC +   
Sbjct: 329 DRMEDHSVMSWTALITGYMKNCNLATEAINLFSEMITQGHVEPNHFTFSSAFKACGNLSD 388

Query: 449 VSRGWELFNAMF 460
              G ++    F
Sbjct: 389 PRVGKQVLGQAF 400



 Score = 85.9 bits (211), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 90/360 (25%), Positives = 159/360 (44%), Gaps = 29/360 (8%)

Query: 247 RFGRLEEAQNL-FDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMP---DRDAVAWTA 302
           R G+L  A+ + FD  P  D + + S+I  Y   G  + A  +F  M     RD V+W+A
Sbjct: 79  RLGKLVHARLIEFDIEP--DSVLYNSLISLYSKSGDSAKAEDVFETMRRFGKRDVVSWSA 136

Query: 303 MISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKT- 361
           M++    N   ++A  +F+E    G+ P +  ++ +  A   +  + +GR     LMKT 
Sbjct: 137 MMACYGNNGRELDAIKVFVEFLELGLVPNDYCYTAVIRACSNSDFVGVGRVTLGFLMKTG 196

Query: 362 ESESDLILENCLISMYAKC-GVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKV 420
             ESD+ +   LI M+ K     +NAY +F  M   ++V+W  M+      G   E ++ 
Sbjct: 197 HFESDVCVGCSLIDMFVKGENSFENAYKVFDKMSELNVVTWTLMITRCMQMGFPREAIRF 256

Query: 421 FESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYV--SMINL 478
           F  M+ SG   +  T   + SAC+    +S G +L +     + I+ G    V  S++++
Sbjct: 257 FLDMVLSGFESDKFTLSSVFSACAELENLSLGKQLHS-----WAIRSGLVDDVECSLVDM 311

Query: 479 LGRA---GKIKEAEEFVLRLPFEPDHRI--WGALLGACGFCEGNAEIAEHAAKRLLELDP 533
             +    G + +  +   R+    DH +  W AL+   G+ + N  +A  A     E+  
Sbjct: 312 YAKCSADGSVDDCRKVFDRM---EDHSVMSWTALI--TGYMK-NCNLATEAINLFSEMIT 365

Query: 534 LN--APAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKI 591
                P H    + + A G   +    +  +G    R +   S +  N  I MF+  D++
Sbjct: 366 QGHVEPNHFTFSSAFKACGNLSDPRVGKQVLGQAFKRGLASNSSVA-NSVISMFVKSDRM 424



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 44/134 (32%), Positives = 74/134 (55%), Gaps = 4/134 (2%)

Query: 323 MRAHGVPPLNA-TFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCG 381
           M   G+ P+++ TFS L  +     +  LG+ +H  L++ + E D +L N LIS+Y+K G
Sbjct: 52  MARDGIRPMDSVTFSSLLKSCIRARDFRLGKLVHARLIEFDIEPDSVLYNSLISLYSKSG 111

Query: 382 VIDNAYNIFSNMV---SRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLG 438
               A ++F  M     RD+VSW++M+  + ++G   + +KVF   LE G  PN   +  
Sbjct: 112 DSAKAEDVFETMRRFGKRDVVSWSAMMACYGNNGRELDAIKVFVEFLELGLVPNDYCYTA 171

Query: 439 ILSACSHAGLVSRG 452
           ++ ACS++  V  G
Sbjct: 172 VIRACSNSDFVGVG 185


>gi|359487704|ref|XP_002276220.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Vitis vinifera]
          Length = 585

 Score =  281 bits (720), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 154/442 (34%), Positives = 249/442 (56%), Gaps = 11/442 (2%)

Query: 163 ERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIE 222
           + N+   T+++  Y +  ++     +F +MP +N+VSW +MI GF  N  +  ++ +F +
Sbjct: 42  DANIFVGTALVDMYAKCADMHSAVRVFDQMPERNLVSWNSMIVGFFHNNLYDRAVGVFKD 101

Query: 223 M---KGICDNGNNCN--VQSCNSMINGYIRFGRLEEAQNL-FDTVPVRDEISWTSMIDGY 276
           +   K +  N  + +  + +C +M  G + FGR      + F  VP+   ++  S++D Y
Sbjct: 102 VLREKTVIPNEVSVSSVLSACANM--GGLNFGRQVHGVVVKFGLVPLTYVMN--SLMDMY 157

Query: 277 LSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFS 336
                      LF  + DRD V W  ++ G VQN+ F EA   F  MR  G+ P  A+FS
Sbjct: 158 FKCRFFDEGVKLFQCVGDRDVVTWNVLVMGFVQNDKFEEACNYFWVMRREGILPDEASFS 217

Query: 337 VLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSR 396
            +  ++ + A +  G  IH  ++K     ++ +   LI+MYAKCG + +AY +F  +   
Sbjct: 218 TVLHSSASLAALHQGTAIHDQIIKLGYVKNMCILGSLITMYAKCGSLVDAYQVFEGIEDH 277

Query: 397 DLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELF 456
           +++SW +M+  +  HG AN+ +++FE ML  G  P+ VTF+ +LSACSH G V  G   F
Sbjct: 278 NVISWTAMISAYQLHGCANQVIELFEHMLSEGIEPSHVTFVCVLSACSHTGRVEEGLAHF 337

Query: 457 NAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEG 516
           N+M  ++ + PGPEHY  M++LLGRAG + EA+ F+  +P +P   +WGALLGAC    G
Sbjct: 338 NSMKKIHDMNPGPEHYACMVDLLGRAGWLDEAKRFIESMPMKPTPSVWGALLGACRK-YG 396

Query: 517 NAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWL 576
           N ++   AA+RL E++P N   +V+L N+   SGR  E +++R  MG+ GVRK PGCSW+
Sbjct: 397 NLKMGREAAERLFEMEPYNPGNYVLLANMCTRSGRLEEANEVRRLMGVNGVRKEPGCSWI 456

Query: 577 MRNGGIQMFLSGDKIPAQVAEI 598
                  +F + D+  +   EI
Sbjct: 457 DVKNMTFVFTAHDRSHSSSDEI 478



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 107/474 (22%), Positives = 201/474 (42%), Gaps = 63/474 (13%)

Query: 38  PQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPER----NVVSWTAMICGLADAGRVCEAR 93
           P  N  +++++LS       +   ++L   + +     N+   TA++   A    +  A 
Sbjct: 6   PYPNQFTFSSILSASAATMMVLHGQQLHSLIHKHGFDANIFVGTALVDMYAKCADMHSAV 65

Query: 94  KLFEEMPERNVVSWNSMVVGLIRNGELNEARKVF-----------NSMPIKNVISWNAMI 142
           ++F++MPERN+VSWNSM+VG   N   + A  VF           N + + +V+S  A +
Sbjct: 66  RVFDQMPERNLVSWNSMIVGFFHNNLYDRAVGVFKDVLREKTVIPNEVSVSSVLSACANM 125

Query: 143 AGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTA 202
            G      +   +V F  +    V+   S++  Y +    +EG  LF+ +  ++VV+W  
Sbjct: 126 GGLNFGRQVHGVVVKFGLVPLTYVM--NSLMDMYFKCRFFDEGVKLFQCVGDRDVVTWNV 183

Query: 203 MIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTV- 261
           ++ GF  N   +E+   F  M+     G   +  S +++++       L +   + D + 
Sbjct: 184 LVMGFVQNDKFEEACNYFWVMR---REGILPDEASFSTVLHSSASLAALHQGTAIHDQII 240

Query: 262 ---PVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATY 318
               V++     S+I  Y   G + +AY +F  + D + ++WTAMIS    +    +   
Sbjct: 241 KLGYVKNMCILGSLITMYAKCGSLVDAYQVFEGIEDHNVISWTAMISAYQLHGCANQVIE 300

Query: 319 LFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILEN--CLISM 376
           LF  M + G+ P + TF  +  A   T  ++ G   H   MK   + +   E+  C++ +
Sbjct: 301 LFEHMLSEGIEPSHVTFVCVLSACSHTGRVEEGLA-HFNSMKKIHDMNPGPEHYACMVDL 359

Query: 377 YAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTF 436
             + G +D A     +M  +                                  P    +
Sbjct: 360 LGRAGWLDEAKRFIESMPMK----------------------------------PTPSVW 385

Query: 437 LGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEE 490
             +L AC   G +  G E    +F++    PG  +YV + N+  R+G+++EA E
Sbjct: 386 GALLGACRKYGNLKMGREAAERLFEMEPYNPG--NYVLLANMCTRSGRLEEANE 437



 Score = 92.0 bits (227), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 48/134 (35%), Positives = 80/134 (59%), Gaps = 1/134 (0%)

Query: 323 MRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGV 382
           MR  G  P   TFS +  A+ AT  +  G+Q+H ++ K   ++++ +   L+ MYAKC  
Sbjct: 1   MRCSGPYPNQFTFSSILSASAATMMVLHGQQLHSLIHKHGFDANIFVGTALVDMYAKCAD 60

Query: 383 IDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESML-ESGTHPNSVTFLGILS 441
           + +A  +F  M  R+LVSWNSM++GF H+ L +  + VF+ +L E    PN V+   +LS
Sbjct: 61  MHSAVRVFDQMPERNLVSWNSMIVGFFHNNLYDRAVGVFKDVLREKTVIPNEVSVSSVLS 120

Query: 442 ACSHAGLVSRGWEL 455
           AC++ G ++ G ++
Sbjct: 121 ACANMGGLNFGRQV 134



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 80/350 (22%), Positives = 139/350 (39%), Gaps = 69/350 (19%)

Query: 226 ICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNA 285
           I  +G + N+    ++++ Y +   +  A  +FD +P R+ +SW SMI G+         
Sbjct: 36  IHKHGFDANIFVGTALVDMYAKCADMHSAVRVFDQMPERNLVSWNSMIVGF--------- 86

Query: 286 YYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFME-MRAHGVPPLNATFSVLFGAAGA 344
              FH                   N L+  A  +F + +R   V P   + S +  A   
Sbjct: 87  ---FH-------------------NNLYDRAVGVFKDVLREKTVIPNEVSVSSVLSACAN 124

Query: 345 TANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSM 404
              ++ GRQ+H V++K        + N L+ MY KC   D    +F  +  RD+V+WN +
Sbjct: 125 MGGLNFGRQVHGVVVKFGLVPLTYVMNSLMDMYFKCRFFDEGVKLFQCVGDRDVVTWNVL 184

Query: 405 VMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFN------- 457
           VMGF  +    E    F  M   G  P+  +F  +L + +    + +G  + +       
Sbjct: 185 VMGFVQNDKFEEACNYFWVMRREGILPDEASFSTVLHSSASLAALHQGTAIHDQIIKLGY 244

Query: 458 ------------------AMFDVYKIQPGPEHY--------VSMINLLGRAGKIKEAEEF 491
                             ++ D Y++  G E +        +S   L G A ++ E  E 
Sbjct: 245 VKNMCILGSLITMYAKCGSLVDAYQVFEGIEDHNVISWTAMISAYQLHGCANQVIELFEH 304

Query: 492 VLRLPFEPDHRIWGALLGACGFCEGNAEIAEH--AAKRLLELDPLNAPAH 539
           +L    EP H  +  +L AC       E   H  + K++ +++P   P H
Sbjct: 305 MLSEGIEPSHVTFVCVLSACSHTGRVEEGLAHFNSMKKIHDMNP--GPEH 352



 Score = 85.5 bits (210), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 81/343 (23%), Positives = 147/343 (42%), Gaps = 86/343 (25%)

Query: 15  TSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEE-MPERNV 73
           T+ +  Y+K   +  A  +F  MP+RN+VS+N+M+ GF  N     A  +F++ + E+ V
Sbjct: 49  TALVDMYAKCADMHSAVRVFDQMPERNLVSWNSMIVGFFHNNLYDRAVGVFKDVLREKTV 108

Query: 74  ----VSWTAMICGLADAGRV-------------------------------C----EARK 94
               VS ++++   A+ G +                               C    E  K
Sbjct: 109 IPNEVSVSSVLSACANMGGLNFGRQVHGVVVKFGLVPLTYVMNSLMDMYFKCRFFDEGVK 168

Query: 95  LFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMP----------------------- 131
           LF+ + +R+VV+WN +V+G ++N +  EA   F  M                        
Sbjct: 169 LFQCVGDRDVVTWNVLVMGFVQNDKFEEACNYFWVMRREGILPDEASFSTVLHSSASLAA 228

Query: 132 ----------------IKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISG 175
                           +KN+    ++I  Y +C  + +A  +FE +E+ NV++WT+MIS 
Sbjct: 229 LHQGTAIHDQIIKLGYVKNMCILGSLITMYAKCGSLVDAYQVFEGIEDHNVISWTAMISA 288

Query: 176 YCRAGEVEEGYCLFRRMPRKNV----VSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGN 231
           Y   G   +   LF  M  + +    V++  ++   +  G  +E L  F  MK I D   
Sbjct: 289 YQLHGCANQVIELFEHMLSEGIEPSHVTFVCVLSACSHTGRVEEGLAHFNSMKKIHDMNP 348

Query: 232 NCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEIS-WTSMI 273
                +C  M++   R G L+EA+   +++P++   S W +++
Sbjct: 349 GPEHYAC--MVDLLGRAGWLDEAKRFIESMPMKPTPSVWGALL 389



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 54/193 (27%), Positives = 92/193 (47%), Gaps = 12/193 (6%)

Query: 14  LTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNV 73
           + S +  Y K  F DE   LFQ +  R+VV++N ++ GF+QN +  EA   F  M    +
Sbjct: 150 MNSLMDMYFKCRFFDEGVKLFQCVGDRDVVTWNVLVMGFVQNDKFEEACNYFWVMRREGI 209

Query: 74  V----SWTAMICGLADAGRVCEARKLFEEMPE----RNVVSWNSMVVGLIRNGELNEARK 125
           +    S++ ++   A    + +   + +++ +    +N+    S++    + G L +A +
Sbjct: 210 LPDEASFSTVLHSSASLAALHQGTAIHDQIIKLGYVKNMCILGSLITMYAKCGSLVDAYQ 269

Query: 126 VFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNV----VTWTSMISGYCRAGE 181
           VF  +   NVISW AMI+ Y       + I LFE M    +    VT+  ++S     G 
Sbjct: 270 VFEGIEDHNVISWTAMISAYQLHGCANQVIELFEHMLSEGIEPSHVTFVCVLSACSHTGR 329

Query: 182 VEEGYCLFRRMPR 194
           VEEG   F  M +
Sbjct: 330 VEEGLAHFNSMKK 342


>gi|297802258|ref|XP_002869013.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297314849|gb|EFH45272.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 693

 Score =  281 bits (720), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 152/476 (31%), Positives = 258/476 (54%), Gaps = 7/476 (1%)

Query: 120 LNEARKVFNSMP----IKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISG 175
           L E +KV   +     +  ++ WN ++  Y +C  + +A  +F+EM ER+V +W  M++G
Sbjct: 103 LEEGKKVHEHIRTSGFVPGIVIWNRILGMYAKCGSLVDARKVFDEMPERDVCSWNVMVNG 162

Query: 176 YCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNV 235
           Y   G +EE   LF  MP ++  SWTAM+ G+      +E+L+L+  M+ + ++  N   
Sbjct: 163 YAEVGLLEEARNLFDEMPERDSYSWTAMVTGYVKKDQPEEALVLYSLMQRVPNSKPNIFT 222

Query: 236 QSCNSMINGYIRFGRL--EEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMP 293
            S        I+  R   E   ++       DE+ W+S++D Y   G +  A  +F  + 
Sbjct: 223 VSSAVAAAAAIKCIRRGKEIHGHIVRAGLDSDEVLWSSLMDMYGKCGCIDEARNIFDKII 282

Query: 294 DRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQ 353
           D+D V+WT+MI    ++  + E   LF E+      P   TFS +  A       +LGRQ
Sbjct: 283 DKDVVSWTSMIDRYFKSSRWREGFSLFSELIGSCERPNEYTFSGVLNACADLTTEELGRQ 342

Query: 354 IHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGL 413
           +H  + +   +      + LI MY KCG I++A ++       DLVS  S++ G++ +G 
Sbjct: 343 VHGYMTRVGFDPYSFASSSLIDMYTKCGNIESARHVVDGCPKPDLVSLTSLIGGYAQNGK 402

Query: 414 ANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYV 473
            +E LK F+ +L+SGT P+ VTF+ +LSAC+HAGLV +G E F ++ + + +    +HY 
Sbjct: 403 PDEALKYFDLLLKSGTKPDHVTFVNVLSACTHAGLVEKGLEFFYSITEKHDLTHTSDHYT 462

Query: 474 SMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDP 533
            +++LL R+G+ ++ +  +  +P +P   +W ++LG C    GN ++AE AA+ L +++P
Sbjct: 463 CLVDLLARSGRFEQLKSVLSEMPMKPSKFLWASVLGGCS-TYGNIDLAEEAAQELFKIEP 521

Query: 534 LNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGD 589
            N   +V + NIYAA+G+  EE K+R  M   G+ K PG SW        +F++ D
Sbjct: 522 ENPVTYVTMANIYAAAGKWEEEGKMRKRMQEIGITKKPGSSWTEIKRKRHVFIAAD 577



 Score =  155 bits (391), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 124/478 (25%), Positives = 212/478 (44%), Gaps = 73/478 (15%)

Query: 42  VVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPE 101
           +V +N +L  + + G L +AR++F+EMPER+V SW  M+ G A+ G + EAR LF+EMPE
Sbjct: 122 IVIWNRILGMYAKCGSLVDARKVFDEMPERDVCSWNVMVNGYAEVGLLEEARNLFDEMPE 181

Query: 102 RNVVSWNSMVVGLIRNGELNEA-------RKVFNSMPIKNVISWNAMIAGYVECCMMGEA 154
           R+  SW +MV G ++  +  EA       ++V NS P    +S     A  ++C   G+ 
Sbjct: 182 RDSYSWTAMVTGYVKKDQPEEALVLYSLMQRVPNSKPNIFTVSSAVAAAAAIKCIRRGKE 241

Query: 155 I--VLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGF 212
           I   +     + + V W+S++  Y + G ++E   +F ++  K+VVSWT+MI  +  +  
Sbjct: 242 IHGHIVRAGLDSDEVLWSSLMDMYGKCGCIDEARNIFDKIIDKDVVSWTSMIDRYFKSSR 301

Query: 213 HKESLLLFIEMKGICDNGN------------NCNVQSCNSMINGYI-RFGRLEEAQNLFD 259
            +E   LF E+ G C+  N            +   +     ++GY+ R G        FD
Sbjct: 302 WREGFSLFSELIGSCERPNEYTFSGVLNACADLTTEELGRQVHGYMTRVG--------FD 353

Query: 260 TVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYL 319
                   + +S+ID Y   G + +A ++    P  D V+ T++I G  QN    EA   
Sbjct: 354 PY----SFASSSLIDMYTKCGNIESARHVVDGCPKPDLVSLTSLIGGYAQNGKPDEALKY 409

Query: 320 FMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQ-IHCVLMKTESESDLILENCLISMYA 378
           F  +   G  P + TF  +  A      ++ G +  + +  K +         CL+ + A
Sbjct: 410 FDLLLKSGTKPDHVTFVNVLSACTHAGLVEKGLEFFYSITEKHDLTHTSDHYTCLVDLLA 469

Query: 379 KCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLG 438
           + G  +   ++ S M  +                                  P+   +  
Sbjct: 470 RSGRFEQLKSVLSEMPMK----------------------------------PSKFLWAS 495

Query: 439 ILSACSHAGLVSRGWELFNAMFDVYKIQP-GPEHYVSMINLLGRAGKIKEAEEFVLRL 495
           +L  CS  G +    E   A  +++KI+P  P  YV+M N+   AGK +E  +   R+
Sbjct: 496 VLGGCSTYGNIDLAEE---AAQELFKIEPENPVTYVTMANIYAAAGKWEEEGKMRKRM 550



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 90/423 (21%), Positives = 172/423 (40%), Gaps = 81/423 (19%)

Query: 7   PKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLF- 65
           P+  V      +  Y++ G ++EA+ LF  MP+R+  S+ AM++G+++  +  EA  L+ 
Sbjct: 149 PERDVCSWNVMVNGYAEVGLLEEARNLFDEMPERDSYSWTAMVTGYVKKDQPEEALVLYS 208

Query: 66  --EEMPERNVVSWTAMICGLADAGRVCEAR------KLFEEMPERNVVSWNSMVVGLIRN 117
             + +P      +T      A A   C  R       +     + + V W+S++    + 
Sbjct: 209 LMQRVPNSKPNIFTVSSAVAAAAAIKCIRRGKEIHGHIVRAGLDSDEVLWSSLMDMYGKC 268

Query: 118 GELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEM----EERNVVTW---- 169
           G ++EAR +F+ +  K+V+SW +MI  Y +     E   LF E+    E  N  T+    
Sbjct: 269 GCIDEARNIFDKIIDKDVVSWTSMIDRYFKSSRWREGFSLFSELIGSCERPNEYTFSGVL 328

Query: 170 -------------------------------TSMISGYCRAGEVEEGYCLFRRMPRKNVV 198
                                          +S+I  Y + G +E    +    P+ ++V
Sbjct: 329 NACADLTTEELGRQVHGYMTRVGFDPYSFASSSLIDMYTKCGNIESARHVVDGCPKPDLV 388

Query: 199 SWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLF 258
           S T++IGG+A NG   E+L  F     +  +G   +  +  ++++     G +E+    F
Sbjct: 389 SLTSLIGGYAQNGKPDEALKYF---DLLLKSGTKPDHVTFVNVLSACTHAGLVEKGLEFF 445

Query: 259 DTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATY 318
            ++  + +++ TS  D Y                        T ++  L ++  F +   
Sbjct: 446 YSITEKHDLTHTS--DHY------------------------TCLVDLLARSGRFEQLKS 479

Query: 319 LFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYA 378
           +  EM    + P    ++ + G      NIDL  +    L K E E+ +     + ++YA
Sbjct: 480 VLSEM---PMKPSKFLWASVLGGCSTYGNIDLAEEAAQELFKIEPENPVTYVT-MANIYA 535

Query: 379 KCG 381
             G
Sbjct: 536 AAG 538



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 54/235 (22%), Positives = 101/235 (42%), Gaps = 18/235 (7%)

Query: 304 ISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTES 363
           I  L   +L  EA  L    +     P  +T+  L      T  ++ G+++H  +  +  
Sbjct: 63  IDVLCGQKLLREAVQLLGRAKK----PPASTYCNLIQVCSQTRALEEGKKVHEHIRTSGF 118

Query: 364 ESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFES 423
              +++ N ++ MYAKCG + +A  +F  M  RD+ SWN MV G++  GL  E   +F+ 
Sbjct: 119 VPGIVIWNRILGMYAKCGSLVDARKVFDEMPERDVCSWNVMVNGYAEVGLLEEARNLFDE 178

Query: 424 MLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPG------PEHYVSMIN 477
           M E     +S ++  +++             L++ M  V   +P            + I 
Sbjct: 179 MPER----DSYSWTAMVTGYVKKDQPEEALVLYSLMQRVPNSKPNIFTVSSAVAAAAAIK 234

Query: 478 LLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELD 532
            + R    KE    ++R   + D  +W +L+   G C G  + A +   ++++ D
Sbjct: 235 CIRRG---KEIHGHIVRAGLDSDEVLWSSLMDMYGKC-GCIDEARNIFDKIIDKD 285



 Score = 62.0 bits (149), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 66/296 (22%), Positives = 130/296 (43%), Gaps = 44/296 (14%)

Query: 15  TSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMP---ER 71
           +S +  Y K G IDEA+ +F  +  ++VVS+ +M+  + ++ R  E   LF E+    ER
Sbjct: 259 SSLMDMYGKCGCIDEARNIFDKIIDKDVVSWTSMIDRYFKSSRWREGFSLFSELIGSCER 318

Query: 72  -NVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSW----NSMVVGLIRNGELNEARKV 126
            N  +++ ++   AD       R++   M       +    +S++    + G +  AR V
Sbjct: 319 PNEYTFSGVLNACADLTTEELGRQVHGYMTRVGFDPYSFASSSLIDMYTKCGNIESARHV 378

Query: 127 FNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEM----EERNVVTWTSMISGYCRAGEV 182
            +  P  +++S  ++I GY +     EA+  F+ +     + + VT+ +++S    AG V
Sbjct: 379 VDGCPKPDLVSLTSLIGGYAQNGKPDEALKYFDLLLKSGTKPDHVTFVNVLSACTHAGLV 438

Query: 183 EEGYCLFRRMPRKNVVS-----WTAMIGGFAWNGFH------------KESLLLFIEMKG 225
           E+G   F  +  K+ ++     +T ++   A +G              K S  L+  + G
Sbjct: 439 EKGLEFFYSITEKHDLTHTSDHYTCLVDLLARSGRFEQLKSVLSEMPMKPSKFLWASVLG 498

Query: 226 ICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQ 281
            C    N ++                E AQ LF   P  + +++ +M + Y + G+
Sbjct: 499 GCSTYGNIDLAE--------------EAAQELFKIEP-ENPVTYVTMANIYAAAGK 539



 Score = 46.6 bits (109), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 50/210 (23%), Positives = 89/210 (42%), Gaps = 39/210 (18%)

Query: 7   PKSLVVHLTSSITKYSKRGFIDEAKALFQLM----PQRNVVSYNAMLSGFLQNGRLSEAR 62
           PK  +V LTS I  Y++ G  DEA   F L+     + + V++  +LS     G + +  
Sbjct: 383 PKPDLVSLTSLIGGYAQNGKPDEALKYFDLLLKSGTKPDHVTFVNVLSACTHAGLVEKGL 442

Query: 63  RLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNE 122
             F  + E++ ++ T+                            +  +V  L R+G   +
Sbjct: 443 EFFYSITEKHDLTHTSD--------------------------HYTCLVDLLARSGRFEQ 476

Query: 123 ARKVFNSMPIK-NVISWNAMIAG---YVECCMMGEAIVLFEEMEERNVVTWTSMISGYCR 178
            + V + MP+K +   W +++ G   Y    +  EA     ++E  N VT+ +M + Y  
Sbjct: 477 LKSVLSEMPMKPSKFLWASVLGGCSTYGNIDLAEEAAQELFKIEPENPVTYVTMANIYAA 536

Query: 179 AGEVEEGYCLFRRM-----PRKNVVSWTAM 203
           AG+ EE   + +RM      +K   SWT +
Sbjct: 537 AGKWEEEGKMRKRMQEIGITKKPGSSWTEI 566


>gi|356528338|ref|XP_003532761.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Glycine max]
          Length = 785

 Score =  281 bits (720), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 174/606 (28%), Positives = 304/606 (50%), Gaps = 35/606 (5%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNV----VSYNAMLSGFLQNGRLSEARRLFEEMPERNV 73
           +++Y+K G   E+  LF+ M +  +     ++  +L GF  + ++ E +R+   + +   
Sbjct: 130 MSEYAKIGNYRESVGLFEKMQELGIRGDSYTFTCVLKGFAASAKVRECKRVHGYVLKLGF 189

Query: 74  VSWTAMICGLADA----GRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNS 129
            S+ A++  L  A    G V  AR LF+E+ +R+VVSWNSM+ G   NG      + F  
Sbjct: 190 GSYNAVVNSLIAAYFKCGEVESARILFDELSDRDVVSWNSMISGCTMNGFSRNGLEFFIQ 249

Query: 130 MPIKNVISWNAMIAGYVECC------MMGEAIVLF--EEMEERNVVTWTSMISGYCRAGE 181
           M    V   +A +   +  C       +G A+  +  +      V+   +++  Y + G 
Sbjct: 250 MLNLGVDVDSATLVNVLVACANVGNLTLGRALHAYGVKAGFSGGVMFNNTLLDMYSKCGN 309

Query: 182 VEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSM 241
           +     +F +M    +VSWT++I      G H E++ LF EM+     G   ++ +  S+
Sbjct: 310 LNGANEVFVKMGETTIVSWTSIIAAHVREGLHYEAIGLFDEMQ---SKGLRPDIYAVTSV 366

Query: 242 INGYIRFGRLEEAQ---------NLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNM 292
           ++       L++ +         N+   +PV +     ++++ Y   G +  A  +F  +
Sbjct: 367 VHACACSNSLDKGREVHNHIKKNNMGSNLPVSN-----ALMNMYAKCGSMEEANLIFSQL 421

Query: 293 PDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGR 352
           P ++ V+W  MI G  QN L  EA  LF++M+   + P + T + +  A    A ++ GR
Sbjct: 422 PVKNIVSWNTMIGGYSQNSLPNEALQLFLDMQKQ-LKPDDVTMACVLPACAGLAALEKGR 480

Query: 353 QIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHG 412
           +IH  +++    SDL +   L+ MY KCG++  A  +F  +  +D++ W  M+ G+  HG
Sbjct: 481 EIHGHILRKGYFSDLHVACALVDMYVKCGLLVLAQQLFDMIPKKDMILWTVMIAGYGMHG 540

Query: 413 LANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHY 472
              E +  FE M  +G  P   +F  IL AC+H+GL+  GW+LF++M     I+P  EHY
Sbjct: 541 FGKEAISTFEKMRVAGIEPEESSFTSILYACTHSGLLKEGWKLFDSMKSECNIEPKLEHY 600

Query: 473 VSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELD 532
             M++LL R+G +  A +F+  +P +PD  IWGALL  C     + E+AE  A+ + EL+
Sbjct: 601 ACMVDLLIRSGNLSRAYKFIETMPIKPDAAIWGALLSGCRI-HHDVELAEKVAEHIFELE 659

Query: 533 PLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIP 592
           P N   +V+L N+YA + +  E  K++  +   G++   GCSW+   G   +F +GD   
Sbjct: 660 PENTRYYVLLANVYAEAEKWEEVKKIQRRISKGGLKNDQGCSWIEVQGKFNIFFAGDTSH 719

Query: 593 AQVAEI 598
            Q   I
Sbjct: 720 PQAKMI 725



 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 138/557 (24%), Positives = 255/557 (45%), Gaps = 86/557 (15%)

Query: 42  VVSYNAMLSGFLQNGRLSEARRLFE--EMPERNVVSWTAMICGLADAGRVCEARKLFEEM 99
            V  NA +  F + G L  A +L    +  E  + ++ +++       ++C   K  E+ 
Sbjct: 24  TVDKNAKICKFCEMGDLRNAMKLLSRSQRSELELNTYCSVL-------QLCAELKSLEDG 76

Query: 100 PE-RNVVSWNSMVVG----------LIRNGELNEARKVFNSMPIKNVISWNAMIAGYVEC 148
               +++S N M +            +  G+L + R++F+ +    +  WN +++ Y + 
Sbjct: 77  KRVHSIISSNGMAIDEVLGAKLVFMYVNCGDLVKGRRIFDGILNDKIFLWNLLMSEYAKI 136

Query: 149 CMMGEAIVLFEEMEERNV----VTWT---------------------------------- 170
               E++ LFE+M+E  +     T+T                                  
Sbjct: 137 GNYRESVGLFEKMQELGIRGDSYTFTCVLKGFAASAKVRECKRVHGYVLKLGFGSYNAVV 196

Query: 171 -SMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGI--- 226
            S+I+ Y + GEVE    LF  +  ++VVSW +MI G   NGF +  L  FI+M  +   
Sbjct: 197 NSLIAAYFKCGEVESARILFDELSDRDVVSWNSMISGCTMNGFSRNGLEFFIQMLNLGVD 256

Query: 227 CDNGNNCNVQ-SCNSMINGYIRFGRLEEAQNLFDTVPVRDEISW-----TSMIDGYLSVG 280
            D+    NV  +C ++  G +  GR   A        V+   S       +++D Y   G
Sbjct: 257 VDSATLVNVLVACANV--GNLTLGRALHAYG------VKAGFSGGVMFNNTLLDMYSKCG 308

Query: 281 QVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFG 340
            ++ A  +F  M +   V+WT++I+  V+  L  EA  LF EM++ G+ P     + +  
Sbjct: 309 NLNGANEVFVKMGETTIVSWTSIIAAHVREGLHYEAIGLFDEMQSKGLRPDIYAVTSVVH 368

Query: 341 AAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVS 400
           A   + ++D GR++H  + K    S+L + N L++MYAKCG ++ A  IFS +  +++VS
Sbjct: 369 ACACSNSLDKGREVHNHIKKNNMGSNLPVSNALMNMYAKCGSMEEANLIFSQLPVKNIVS 428

Query: 401 WNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMF 460
           WN+M+ G+S + L NE L++F  M +    P+ VT   +L AC+    + +G E+   + 
Sbjct: 429 WNTMIGGYSQNSLPNEALQLFLDM-QKQLKPDDVTMACVLPACAGLAALEKGREIHGHI- 486

Query: 461 DVYKIQPGPEHYV-SMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALL---GACGFCEG 516
            + K      H   +++++  + G +  A++    +P + D  +W  ++   G  GF  G
Sbjct: 487 -LRKGYFSDLHVACALVDMYVKCGLLVLAQQLFDMIP-KKDMILWTVMIAGYGMHGF--G 542

Query: 517 NAEIAEHAAKRLLELDP 533
              I+     R+  ++P
Sbjct: 543 KEAISTFEKMRVAGIEP 559



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 116/494 (23%), Positives = 197/494 (39%), Gaps = 113/494 (22%)

Query: 14  LTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNV 73
           + S I  Y K G ++ A+ LF  +  R+VVS+N+M+SG   NG        F +M    V
Sbjct: 196 VNSLIAAYFKCGEVESARILFDELSDRDVVSWNSMISGCTMNGFSRNGLEFFIQMLNLGV 255

Query: 74  ----VSWTAMICGLADAGRVCEARKLFEEMPER----NVVSWNSMVVGLIRNGELNEARK 125
                +   ++   A+ G +   R L     +      V+  N+++    + G LN A +
Sbjct: 256 DVDSATLVNVLVACANVGNLTLGRALHAYGVKAGFSGGVMFNNTLLDMYSKCGNLNGANE 315

Query: 126 VFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEER--------------------- 164
           VF  M    ++SW ++IA +V   +  EAI LF+EM+ +                     
Sbjct: 316 VFVKMGETTIVSWTSIIAAHVREGLHYEAIGLFDEMQSKGLRPDIYAVTSVVHACACSNS 375

Query: 165 ------------------NVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGG 206
                             N+    ++++ Y + G +EE   +F ++P KN+VSW  MIGG
Sbjct: 376 LDKGREVHNHIKKNNMGSNLPVSNALMNMYAKCGSMEEANLIFSQLPVKNIVSWNTMIGG 435

Query: 207 FAWNGFHKESLLLFIEMKG-------------------------------ICDNGNNCNV 235
           ++ N    E+L LF++M+                                I   G   ++
Sbjct: 436 YSQNSLPNEALQLFLDMQKQLKPDDVTMACVLPACAGLAALEKGREIHGHILRKGYFSDL 495

Query: 236 QSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDR 295
               ++++ Y++ G L  AQ LFD +P +D I WT MI GY   G               
Sbjct: 496 HVACALVDMYVKCGLLVLAQQLFDMIPKKDMILWTVMIAGYGMHG--------------- 540

Query: 296 DAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIH 355
                              EA   F +MR  G+ P  ++F+ +  A   +  +  G ++ 
Sbjct: 541 ----------------FGKEAISTFEKMRVAGIEPEESSFTSILYACTHSGLLKEGWKLF 584

Query: 356 CVLMKTESESDLILEN--CLISMYAKCGVIDNAYNIFSNM-VSRDLVSWNSMVMGFSHHG 412
              MK+E   +  LE+  C++ +  + G +  AY     M +  D   W +++ G   H 
Sbjct: 585 DS-MKSECNIEPKLEHYACMVDLLIRSGNLSRAYKFIETMPIKPDAAIWGALLSGCRIHH 643

Query: 413 LANETLKVFESMLE 426
                 KV E + E
Sbjct: 644 DVELAEKVAEHIFE 657



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 72/308 (23%), Positives = 142/308 (46%), Gaps = 15/308 (4%)

Query: 265 DEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMR 324
           DE+    ++  Y++ G +     +F  + +     W  ++S   +   + E+  LF +M+
Sbjct: 91  DEVLGAKLVFMYVNCGDLVKGRRIFDGILNDKIFLWNLLMSEYAKIGNYRESVGLFEKMQ 150

Query: 325 AHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVID 384
             G+   + TF+ +     A+A +   +++H  ++K    S   + N LI+ Y KCG ++
Sbjct: 151 ELGIRGDSYTFTCVLKGFAASAKVRECKRVHGYVLKLGFGSYNAVVNSLIAAYFKCGEVE 210

Query: 385 NAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACS 444
           +A  +F  +  RD+VSWNSM+ G + +G +   L+ F  ML  G   +S T + +L AC+
Sbjct: 211 SARILFDELSDRDVVSWNSMISGCTMNGFSRNGLEFFIQMLNLGVDVDSATLVNVLVACA 270

Query: 445 HAGLVSRGWELFNAMFDVYKIQPGPEHYV----SMINLLGRAGKIKEAEEFVLRLPFEPD 500
           + G ++ G  L       Y ++ G    V    +++++  + G +  A E  +++  E  
Sbjct: 271 NVGNLTLGRALH-----AYGVKAGFSGGVMFNNTLLDMYSKCGNLNGANEVFVKMG-ETT 324

Query: 501 HRIWGALLGACG----FCEGNAEIAEHAAKRLL-ELDPLNAPAHVVLCNIYAASGRHVEE 555
              W +++ A        E      E  +K L  ++  + +  H   C+     GR V  
Sbjct: 325 IVSWTSIIAAHVREGLHYEAIGLFDEMQSKGLRPDIYAVTSVVHACACSNSLDKGREVHN 384

Query: 556 HKLRMDMG 563
           H  + +MG
Sbjct: 385 HIKKNNMG 392


>gi|147799847|emb|CAN66059.1| hypothetical protein VITISV_017037 [Vitis vinifera]
          Length = 546

 Score =  281 bits (720), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 169/492 (34%), Positives = 257/492 (52%), Gaps = 34/492 (6%)

Query: 95  LFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMP----IKNVISWNAMIAGYVECCM 150
           +F  +   + V WN+ + G   N  ++    +F  M     + +  ++ ++I    + C 
Sbjct: 79  VFNGVSSPSTVLWNTYIKGYSENYSVSLTVSLFIRMKRSDAVPDKFTYPSLIKACSKVCG 138

Query: 151 MGEAIVLFEEMEER-----NVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIG 205
           + E +  F     R     +V   TS+I  Y + GE+     +F  M  +NVVSWTAMI 
Sbjct: 139 VKEGVA-FHGSAVRCGVGGDVFVMTSLIDLYGKCGEILCARKVFDEMGERNVVSWTAMIA 197

Query: 206 GFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRD 265
           G+A       S    +E + + D     N  S N++I+GY++ G L  A+ +FD +P R+
Sbjct: 198 GYA-------SFSDLVEARKLFDEMPEKNAVSWNAIISGYVKCGDLRSARKMFDEMPHRN 250

Query: 266 EISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRA 325
            +S+T+MIDGY   G +++A ++F   P+RD VAW+A+I               F     
Sbjct: 251 VVSFTTMIDGYAKSGDMASARFVFEEAPERDVVAWSALI---------------FRVCAE 295

Query: 326 HGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLI-LENCLISMYAKCGVID 384
             V P       L  A     +++L + +   + K+  +     +   LI M AKCG +D
Sbjct: 296 WNVKPDEFIMVSLMSACSQMGSLELAKWVDDYVRKSSIDVHRAHVIAALIDMNAKCGSMD 355

Query: 385 NAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACS 444
            A  +F  M  RDL+S+ SM+ G S HG   + + +F  ML  G  P+ V F  IL+ACS
Sbjct: 356 RATKLFEEMPKRDLISYCSMMQGLSIHGCGPQAVSLFSRMLNEGLTPDDVAFTVILTACS 415

Query: 445 HAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIW 504
            AGLV  G   F +M   Y I P P+HY  M++LLGRAG++KEA E +  +P EP    W
Sbjct: 416 RAGLVDEGCYYFESMKTDYSIVPSPDHYACMVDLLGRAGRLKEAYELLKSMPVEPHAGAW 475

Query: 505 GALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGL 564
           GALLGAC     + E+ E  A +L EL+P NA  +V+L NIYAA+ + ++   LR  M  
Sbjct: 476 GALLGACKL-HCDIELGEVVADQLFELEPQNAGNYVLLSNIYAAAEQWLDVSLLRNKMRE 534

Query: 565 KGVRKVPGCSWL 576
           +G+RK+PGCSW+
Sbjct: 535 RGIRKIPGCSWI 546



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 101/334 (30%), Positives = 169/334 (50%), Gaps = 36/334 (10%)

Query: 72  NVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMP 131
           +V   T++I      G +  ARK+F+EM ERNVVSW +M+ G     +L EARK+F+ MP
Sbjct: 157 DVFVMTSLIDLYGKCGEILCARKVFDEMGERNVVSWTAMIAGYASFSDLVEARKLFDEMP 216

Query: 132 IKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRR 191
            KN +SWNA+I+GYV+C  +  A  +F+EM  RNVV++T+MI GY ++G++     +F  
Sbjct: 217 EKNAVSWNAIISGYVKCGDLRSARKMFDEMPHRNVVSFTTMIDGYAKSGDMASARFVFEE 276

Query: 192 MPRKNVVSWTAMIGGFA--WNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFG 249
            P ++VV+W+A+I      WN    E +++ +             + +C+ M       G
Sbjct: 277 APERDVVAWSALIFRVCAEWNVKPDEFIMVSL-------------MSACSQM-------G 316

Query: 250 RLEEAQNLFD-----TVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMI 304
            LE A+ + D     ++ V       ++ID     G +  A  LF  MP RD +++ +M+
Sbjct: 317 SLELAKWVDDYVRKSSIDVHRAHVIAALIDMNAKCGSMDRATKLFEEMPKRDLISYCSMM 376

Query: 305 SGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESE 364
            GL  +    +A  LF  M   G+ P +  F+V+  A      +D G    C   ++   
Sbjct: 377 QGLSIHGCGPQAVSLFSRMLNEGLTPDDVAFTVILTACSRAGLVDEG----CYYFESMKT 432

Query: 365 SDLILEN-----CLISMYAKCGVIDNAYNIFSNM 393
              I+ +     C++ +  + G +  AY +  +M
Sbjct: 433 DYSIVPSPDHYACMVDLLGRAGRLKEAYELLKSM 466



 Score =  152 bits (384), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 101/311 (32%), Positives = 163/311 (52%), Gaps = 21/311 (6%)

Query: 41  NVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMP 100
           +V    +++  + + G +  AR++F+EM ERNVVSWTAMI G A    + EARKLF+EMP
Sbjct: 157 DVFVMTSLIDLYGKCGEILCARKVFDEMGERNVVSWTAMIAGYASFSDLVEARKLFDEMP 216

Query: 101 ERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEE 160
           E+N VSWN+++ G ++ G+L  ARK+F+ MP +NV+S+  MI GY +   M  A  +FEE
Sbjct: 217 EKNAVSWNAIISGYVKCGDLRSARKMFDEMPHRNVVSFTTMIDGYAKSGDMASARFVFEE 276

Query: 161 MEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLF 220
             ER+VV W+++I   C    V+    +       +++S  + +G      +  +    +
Sbjct: 277 APERDVVAWSALIFRVCAEWNVKPDEFIM-----VSLMSACSQMGSLELAKWVDD----Y 327

Query: 221 IEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVG 280
           +    I  + +  +V +  ++I+   + G ++ A  LF+ +P RD IS+ SM+ G    G
Sbjct: 328 VRKSSI--DVHRAHVIA--ALIDMNAKCGSMDRATKLFEEMPKRDLISYCSMMQGLSIHG 383

Query: 281 QVSNAYYLFHNMPDR----DAVAWTAMISGLVQNELFVEATYLFMEMRAH----GVPPLN 332
               A  LF  M +     D VA+T +++   +  L  E  Y F  M+        P   
Sbjct: 384 CGPQAVSLFSRMLNEGLTPDDVAFTVILTACSRAGLVDEGCYYFESMKTDYSIVPSPDHY 443

Query: 333 ATFSVLFGAAG 343
           A    L G AG
Sbjct: 444 ACMVDLLGRAG 454



 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 98/327 (29%), Positives = 165/327 (50%), Gaps = 38/327 (11%)

Query: 11  VVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPE 70
           V  +TS I  Y K G I  A+ +F  M +RNVVS+ AM++G+     L EAR+LF+EMPE
Sbjct: 158 VFVMTSLIDLYGKCGEILCARKVFDEMGERNVVSWTAMIAGYASFSDLVEARKLFDEMPE 217

Query: 71  RNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSM 130
           +N VSW A+I G    G +  ARK+F+EMP RNVVS+ +M+ G  ++G++  AR VF   
Sbjct: 218 KNAVSWNAIISGYVKCGDLRSARKMFDEMPHRNVVSFTTMIDGYAKSGDMASARFVFEEA 277

Query: 131 PIKNVISWNA-----------------MIAGYVECCMMG--------EAIVLFEEMEERN 165
           P ++V++W+A                 M++    C  MG        +  V    ++   
Sbjct: 278 PERDVVAWSALIFRVCAEWNVKPDEFIMVSLMSACSQMGSLELAKWVDDYVRKSSIDVHR 337

Query: 166 VVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKG 225
                ++I    + G ++    LF  MP+++++S+ +M+ G + +G   +++ LF  M  
Sbjct: 338 AHVIAALIDMNAKCGSMDRATKLFEEMPKRDLISYCSMMQGLSIHGCGPQAVSLFSRM-- 395

Query: 226 ICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDT-------VPVRDEISWTSMIDGYLS 278
             + G   +  +   ++    R G ++E    F++       VP  D   +  M+D    
Sbjct: 396 -LNEGLTPDDVAFTVILTACSRAGLVDEGCYYFESMKTDYSIVPSPDH--YACMVDLLGR 452

Query: 279 VGQVSNAYYLFHNMP-DRDAVAWTAMI 304
            G++  AY L  +MP +  A AW A++
Sbjct: 453 AGRLKEAYELLKSMPVEPHAGAWGALL 479



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 96/292 (32%), Positives = 152/292 (52%), Gaps = 36/292 (12%)

Query: 1   MSERNHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSE 60
           M ERN     VV  T+ I  Y+    + EA+ LF  MP++N VS+NA++SG+++ G L  
Sbjct: 184 MGERN-----VVSWTAMIAGYASFSDLVEARKLFDEMPEKNAVSWNAIISGYVKCGDLRS 238

Query: 61  ARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMV--------- 111
           AR++F+EMP RNVVS+T MI G A +G +  AR +FEE PER+VV+W++++         
Sbjct: 239 ARKMFDEMPHRNVVSFTTMIDGYAKSGDMASARFVFEEAPERDVVAWSALIFRVCAEWNV 298

Query: 112 -------VGLI----RNGELNEARKVFN-----SMPIKNVISWNAMIAGYVECCMMGEAI 155
                  V L+    + G L  A+ V +     S+ +       A+I    +C  M  A 
Sbjct: 299 KPDEFIMVSLMSACSQMGSLELAKWVDDYVRKSSIDVHRAHVIAALIDMNAKCGSMDRAT 358

Query: 156 VLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNV----VSWTAMIGGFAWNG 211
            LFEEM +R+++++ SM+ G    G   +   LF RM  + +    V++T ++   +  G
Sbjct: 359 KLFEEMPKRDLISYCSMMQGLSIHGCGPQAVSLFSRMLNEGLTPDDVAFTVILTACSRAG 418

Query: 212 FHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPV 263
              E    F  MK       + +  +C  M++   R GRL+EA  L  ++PV
Sbjct: 419 LVDEGCYYFESMKTDYSIVPSPDHYAC--MVDLLGRAGRLKEAYELLKSMPV 468



 Score = 75.5 bits (184), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 57/231 (24%), Positives = 96/231 (41%), Gaps = 10/231 (4%)

Query: 278 SVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSV 337
           S+   S    +F+ +     V W   I G  +N        LF+ M+     P   T+  
Sbjct: 69  SLSNFSYTTSVFNGVSSPSTVLWNTYIKGYSENYSVSLTVSLFIRMKRSDAVPDKFTYPS 128

Query: 338 LFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRD 397
           L  A      +  G   H   ++     D+ +   LI +Y KCG I  A  +F  M  R+
Sbjct: 129 LIKACSKVCGVKEGVAFHGSAVRCGVGGDVFVMTSLIDLYGKCGEILCARKVFDEMGERN 188

Query: 398 LVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFN 457
           +VSW +M+ G++      E  K+F+ M E     N+V++  I+S     G +    ++F+
Sbjct: 189 VVSWTAMIAGYASFSDLVEARKLFDEMPEK----NAVSWNAIISGYVKCGDLRSARKMFD 244

Query: 458 AMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALL 508
            M     +      + +MI+   ++G +  A  FV     E D   W AL+
Sbjct: 245 EMPHRNVVS-----FTTMIDGYAKSGDMASA-RFVFEEAPERDVVAWSALI 289



 Score = 45.8 bits (107), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 34/156 (21%), Positives = 70/156 (44%), Gaps = 8/156 (5%)

Query: 332 NATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFS 391
            ++ S L  A   T+ ++   Q+H  +++     D  L +  +++           ++F+
Sbjct: 25  TSSISTLLKACTTTSTLE---QVHARIIRKGLHQDHFLISQFLTLCNSLSNFSYTTSVFN 81

Query: 392 NMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSR 451
            + S   V WN+ + G+S +   + T+ +F  M  S   P+  T+  ++ ACS    V  
Sbjct: 82  GVSSPSTVLWNTYIKGYSENYSVSLTVSLFIRMKRSDAVPDKFTYPSLIKACSKVCGVKE 141

Query: 452 GWELFNAMFDVYKIQPGPEHYV--SMINLLGRAGKI 485
           G     +     +   G + +V  S+I+L G+ G+I
Sbjct: 142 GVAFHGS---AVRCGVGGDVFVMTSLIDLYGKCGEI 174


>gi|357127622|ref|XP_003565478.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Brachypodium distachyon]
          Length = 870

 Score =  281 bits (719), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 190/635 (29%), Positives = 309/635 (48%), Gaps = 93/635 (14%)

Query: 52  FLQNGRLSEARRLFEEMPE-RNVVSWTAMICGLADAGRVCEARKLFEEM------PERNV 104
           +L+ G L  ARR+F+EMP+  +V  WTA++ G A AG + E   LF +M      P+   
Sbjct: 139 YLKCGDLENARRVFDEMPQVSDVRVWTALMSGYAKAGDLREGVLLFRKMHCCGVRPDAYT 198

Query: 105 VSW---------------------------------NSMVVGLIRNGELNEARKVFNSMP 131
           +S                                  N+++    ++    +A  VF+ MP
Sbjct: 199 ISCVLKCIAGLGSIEDGEVVHGLLEKLGFGSQCAVGNALMAFYAKSNRTKDAILVFDGMP 258

Query: 132 IKNVISWNAMIAGYVECCMMGEAIVLFEEM----EERNVVTWTSMISGYCRA-----GEV 182
            ++VISWN+MI+G     +  +AI LF  M    EE +  T  S++           G V
Sbjct: 259 HRDVISWNSMISGCTSNGLYDKAIELFVRMWLEGEELDSATLLSVLPACAELHLLFLGRV 318

Query: 183 EEGYC------------------------------LFRRMPRKNVVSWTAMIGGFAWNGF 212
             GY                               +FR M +KNVVSWTAMI  +   G 
Sbjct: 319 VHGYSVKTGFISQTSLANVLLDMYSNCSDWRSTNKIFRNMVQKNVVSWTAMITSYTRAGL 378

Query: 213 HKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEIS---- 268
           + +   LF EM G+   G   ++ +  S ++ +     L+  +++     +R+ +     
Sbjct: 379 YDKVAGLFQEM-GL--EGTRPDIFAITSALHAFAGNELLKHGKSVHG-YAIRNGMEKVLA 434

Query: 269 -WTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHG 327
              ++++ Y+  G +  A  +F  +  +D ++W  +I G  +N L  EA  LF EM    
Sbjct: 435 VTNALMEMYVKCGNMEEAKLIFDGVVSKDMISWNTLIGGYSRNNLANEAFSLFTEMLLQ- 493

Query: 328 VPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAY 387
           + P   T + +  AA + ++++ GR++H   ++     D  + N LI MY KCG +  A 
Sbjct: 494 LRPNAVTMTCILPAAASLSSLERGREMHAYALRRGYLEDDFVANALIDMYVKCGALLLAR 553

Query: 388 NIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAG 447
            +F  + +++L+SW  MV G+  HG   + + +FE M  SG  P++ +F  IL ACSH+G
Sbjct: 554 RLFDRLSNKNLISWTIMVAGYGMHGRGRDAIALFEQMRVSGIAPDAASFSAILYACSHSG 613

Query: 448 LVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGAL 507
           L   GW  F+AM   +KI+P  +HY  M++LL   G +KEA EF+  +P EPD  IW +L
Sbjct: 614 LRDEGWRFFDAMRKEHKIEPRLKHYTCMVDLLINTGNLKEAYEFIDSMPIEPDSSIWVSL 673

Query: 508 LGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGV 567
           L  C     N ++AE  A+R+ EL+P N   +V+L NIYA + R     KL+  +G +G+
Sbjct: 674 LRGCRI-HRNVKLAEEVAERVFELEPENTGYYVLLANIYAEAERWEAVRKLKNKIGGRGL 732

Query: 568 RKVPGCSWLMRNGGIQMFLSGDKIPAQ---VAEIL 599
           R+  GCSW+   G + +F++ ++   Q   +AE L
Sbjct: 733 RENTGCSWIEAKGKVHVFIADNRNHPQGTRIAEFL 767



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 108/459 (23%), Positives = 189/459 (41%), Gaps = 61/459 (13%)

Query: 21  YSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEM----PERNVVSW 76
           Y+K     +A  +F  MP R+V+S+N+M+SG   NG   +A  LF  M     E +  + 
Sbjct: 241 YAKSNRTKDAILVFDGMPHRDVISWNSMISGCTSNGLYDKAIELFVRMWLEGEELDSATL 300

Query: 77  TAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLI----RNGELNEARKVFNSMPI 132
            +++   A+   +   R +     +   +S  S+   L+       +     K+F +M  
Sbjct: 301 LSVLPACAELHLLFLGRVVHGYSVKTGFISQTSLANVLLDMYSNCSDWRSTNKIFRNMVQ 360

Query: 133 KNVISWNAMIAGYVECCMMGEAIVLFEEME------------------------------ 162
           KNV+SW AMI  Y    +  +   LF+EM                               
Sbjct: 361 KNVVSWTAMITSYTRAGLYDKVAGLFQEMGLEGTRPDIFAITSALHAFAGNELLKHGKSV 420

Query: 163 ---------ERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFH 213
                    E+ +    +++  Y + G +EE   +F  +  K+++SW  +IGG++ N   
Sbjct: 421 HGYAIRNGMEKVLAVTNALMEMYVKCGNMEEAKLIFDGVVSKDMISWNTLIGGYSRNNLA 480

Query: 214 KESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVR----DEISW 269
            E+  LF EM  +     N    +C  ++        LE  + +      R    D+   
Sbjct: 481 NEAFSLFTEM--LLQLRPNAVTMTC--ILPAAASLSSLERGREMHAYALRRGYLEDDFVA 536

Query: 270 TSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVP 329
            ++ID Y+  G +  A  LF  + +++ ++WT M++G   +    +A  LF +MR  G+ 
Sbjct: 537 NALIDMYVKCGALLLARRLFDRLSNKNLISWTIMVAGYGMHGRGRDAIALFEQMRVSGIA 596

Query: 330 PLNATFSVLFGAAGATANIDLGRQIHCVLMKTES-ESDLILENCLISMYAKCGVIDNAYN 388
           P  A+FS +  A   +   D G +    + K    E  L    C++ +    G +  AY 
Sbjct: 597 PDAASFSAILYACSHSGLRDEGWRFFDAMRKEHKIEPRLKHYTCMVDLLINTGNLKEAYE 656

Query: 389 IFSNM-VSRDLVSWNSMVMGFSHH---GLANETL-KVFE 422
              +M +  D   W S++ G   H    LA E   +VFE
Sbjct: 657 FIDSMPIEPDSSIWVSLLRGCRIHRNVKLAEEVAERVFE 695



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 63/216 (29%), Positives = 101/216 (46%), Gaps = 6/216 (2%)

Query: 265 DEISWTSMIDGYLSVGQVSNAYYLFHNMPD-RDAVAWTAMISGLVQNELFVEATYLFMEM 323
           D +    ++  YL  G + NA  +F  MP   D   WTA++SG  +     E   LF +M
Sbjct: 128 DNVLGQKLVLMYLKCGDLENARRVFDEMPQVSDVRVWTALMSGYAKAGDLREGVLLFRKM 187

Query: 324 RAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVI 383
              GV P   T S +        +I+ G  +H +L K    S   + N L++ YAK    
Sbjct: 188 HCCGVRPDAYTISCVLKCIAGLGSIEDGEVVHGLLEKLGFGSQCAVGNALMAFYAKSNRT 247

Query: 384 DNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSAC 443
            +A  +F  M  RD++SWNSM+ G + +GL ++ +++F  M   G   +S T L +L AC
Sbjct: 248 KDAILVFDGMPHRDVISWNSMISGCTSNGLYDKAIELFVRMWLEGEELDSATLLSVLPAC 307

Query: 444 SHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLL 479
           +   L+         +   Y ++ G     S+ N+L
Sbjct: 308 AELHLL-----FLGRVVHGYSVKTGFISQTSLANVL 338



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 75/325 (23%), Positives = 148/325 (45%), Gaps = 26/325 (8%)

Query: 4   RNHPKSLVVHLTSSITKYSKRGFIDEAKALFQLM----PQRNVVSYNAMLSGFLQNGRLS 59
           RN  +  VV  T+ IT Y++ G  D+   LFQ M     + ++ +  + L  F  N  L 
Sbjct: 356 RNMVQKNVVSWTAMITSYTRAGLYDKVAGLFQEMGLEGTRPDIFAITSALHAFAGNELLK 415

Query: 60  EARRL----FEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLI 115
             + +         E+ +    A++      G + EA+ +F+ +  ++++SWN+++ G  
Sbjct: 416 HGKSVHGYAIRNGMEKVLAVTNALMEMYVKCGNMEEAKLIFDGVVSKDMISWNTLIGGYS 475

Query: 116 RNGELNEARKVFNSMPIK---NVISWNAMIAGYVECCMMGE-----AIVLFEEMEERNVV 167
           RN   NEA  +F  M ++   N ++   ++        +       A  L     E + V
Sbjct: 476 RNNLANEAFSLFTEMLLQLRPNAVTMTCILPAAASLSSLERGREMHAYALRRGYLEDDFV 535

Query: 168 TWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGIC 227
              ++I  Y + G +     LF R+  KN++SWT M+ G+  +G  ++++ LF +M+   
Sbjct: 536 A-NALIDMYVKCGALLLARRLFDRLSNKNLISWTIMVAGYGMHGRGRDAIALFEQMR--- 591

Query: 228 DNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEIS-----WTSMIDGYLSVGQV 282
            +G   +  S ++++      G  +E    FD +    +I      +T M+D  ++ G +
Sbjct: 592 VSGIAPDAASFSAILYACSHSGLRDEGWRFFDAMRKEHKIEPRLKHYTCMVDLLINTGNL 651

Query: 283 SNAYYLFHNMP-DRDAVAWTAMISG 306
             AY    +MP + D+  W +++ G
Sbjct: 652 KEAYEFIDSMPIEPDSSIWVSLLRG 676


>gi|357159954|ref|XP_003578611.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Brachypodium distachyon]
          Length = 600

 Score =  281 bits (719), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 175/557 (31%), Positives = 275/557 (49%), Gaps = 47/557 (8%)

Query: 41  NVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSW--TAMICGLADAGRVCEARKLFEE 98
           + V+ + +LS +  + RL  +R +F   P  +  ++    ++   A      EA  +F  
Sbjct: 55  DPVAASKLLSSYALHRRLPASRGVFASFPNPHATTFLPNTLLRAYALNALPREAVAVFSA 114

Query: 99  MPERNVVSWNSMVVGLIRNGELNEARKVFNSM----PIKNVISWNAMIAGYVECCMMGEA 154
           MP R+  +++ ++  L   G +   R V + +     I++    NA+I  Y +     +A
Sbjct: 115 MPHRDSFTYSFLIKALSSAG-VAPLRAVHSHVVKLGSIEDTYVGNALIDAYSKNGGFSDA 173

Query: 155 IVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHK 214
             +FEEM  R+VV+W S ++   R GEVE    +F  M  K+ VSW              
Sbjct: 174 SKVFEEMPRRDVVSWNSAMAAMVRQGEVEGARRMFDEMLEKDTVSW-------------- 219

Query: 215 ESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMID 274
                                   N++++GY + G +EEA  LF  +P R+ +SW++++ 
Sbjct: 220 ------------------------NTLLDGYTKAGDVEEAFKLFQCMPERNVVSWSTVVS 255

Query: 275 GYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNAT 334
           GY   G +  A  +F  MP ++ V WT M+S   QN L  EA  LF +M+   V    A 
Sbjct: 256 GYCKKGDMEMARVIFDKMPTKNLVTWTIMVSACAQNGLVEEAGKLFTQMKEASVELDVAA 315

Query: 335 FSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIF-SNM 393
              +  A   + ++ LG++IH  +   +      + N LI M+ KCG I+ A  +F + +
Sbjct: 316 VVSILAACAESGSLALGKRIHRYVRTRQLGRSTHVCNALIDMFCKCGCINRADYVFDTEI 375

Query: 394 VSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGW 453
           V +D VSWN+++ GF+ HG  ++ L  F  M   G  P++VT + +LSAC+H G V  G 
Sbjct: 376 VEKDSVSWNTIIGGFAMHGHGDKALDFFAQMKLQGFCPDAVTMINVLSACTHMGFVEEGR 435

Query: 454 ELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGF 513
             F  M   Y + P  EHY  MI+LLGR G IKEA + +  +P++P+  IWG+LL AC  
Sbjct: 436 RYFANMERDYGVVPQIEHYGCMIDLLGRGGLIKEAVDLIKSMPWDPNEVIWGSLLSACRL 495

Query: 514 CEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGC 573
              N E AE A   L +L P NA  + VL +IYA +G+  +  K RM M   G +K  G 
Sbjct: 496 -HKNVEYAEIAVNELSKLQPSNAGNYAVLSSIYAEAGKWSDMAKARMQMKGTGSQKSSGS 554

Query: 574 SWLMRNGGIQMFLSGDK 590
           SW+  +     F  GD+
Sbjct: 555 SWIELDEAFHEFTVGDR 571



 Score =  177 bits (450), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 114/402 (28%), Positives = 203/402 (50%), Gaps = 21/402 (5%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWT 77
           +  Y+      EA A+F  MP R+  +Y+ ++      G ++  R +   + +   +  T
Sbjct: 96  LRAYALNALPREAVAVFSAMPHRDSFTYSFLIKALSSAG-VAPLRAVHSHVVKLGSIEDT 154

Query: 78  AMICGLADA----GRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIK 133
            +   L DA    G   +A K+FEEMP R+VVSWNS +  ++R GE+  AR++F+ M  K
Sbjct: 155 YVGNALIDAYSKNGGFSDASKVFEEMPRRDVVSWNSAMAAMVRQGEVEGARRMFDEMLEK 214

Query: 134 NVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMP 193
           + +SWN ++ GY +   + EA  LF+ M ERNVV+W++++SGYC+ G++E    +F +MP
Sbjct: 215 DTVSWNTLLDGYTKAGDVEEAFKLFQCMPERNVVSWSTVVSGYCKKGDMEMARVIFDKMP 274

Query: 194 RKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEE 253
            KN+V+WT M+   A NG  +E+  LF +MK   +     +V +  S++      G L  
Sbjct: 275 TKNLVTWTIMVSACAQNGLVEEAGKLFTQMK---EASVELDVAAVVSILAACAESGSLAL 331

Query: 254 AQNLFDTVPVRDEISWT----SMIDGYLSVGQVSNAYYLFHN-MPDRDAVAWTAMISGLV 308
            + +   V  R     T    ++ID +   G ++ A Y+F   + ++D+V+W  +I G  
Sbjct: 332 GKRIHRYVRTRQLGRSTHVCNALIDMFCKCGCINRADYVFDTEIVEKDSVSWNTIIGGFA 391

Query: 309 QNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLI 368
            +    +A   F +M+  G  P   T   +  A      ++ GR+        E +  ++
Sbjct: 392 MHGHGDKALDFFAQMKLQGFCPDAVTMINVLSACTHMGFVEEGRRY---FANMERDYGVV 448

Query: 369 LE----NCLISMYAKCGVIDNAYNIFSNMV-SRDLVSWNSMV 405
            +     C+I +  + G+I  A ++  +M    + V W S++
Sbjct: 449 PQIEHYGCMIDLLGRGGLIKEAVDLIKSMPWDPNEVIWGSLL 490



 Score =  135 bits (340), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 95/314 (30%), Positives = 156/314 (49%), Gaps = 16/314 (5%)

Query: 7   PKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFE 66
           P+  VV   S++    ++G ++ A+ +F  M +++ VS+N +L G+ + G + EA +LF+
Sbjct: 181 PRRDVVSWNSAMAAMVRQGEVEGARRMFDEMLEKDTVSWNTLLDGYTKAGDVEEAFKLFQ 240

Query: 67  EMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKV 126
            MPERNVVSW+ ++ G    G +  AR +F++MP +N+V+W  MV    +NG + EA K+
Sbjct: 241 CMPERNVVSWSTVVSGYCKKGDMEMARVIFDKMPTKNLVTWTIMVSACAQNGLVEEAGKL 300

Query: 127 FNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEE--------RNVVTWTSMISGYCR 178
           F  M   +V    A +   +  C    ++ L + +          R+     ++I  +C+
Sbjct: 301 FTQMKEASVELDVAAVVSILAACAESGSLALGKRIHRYVRTRQLGRSTHVCNALIDMFCK 360

Query: 179 AGEVEEG-YCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMK--GIC-DNGNNCN 234
            G +    Y     +  K+ VSW  +IGGFA +G   ++L  F +MK  G C D     N
Sbjct: 361 CGCINRADYVFDTEIVEKDSVSWNTIIGGFAMHGHGDKALDFFAQMKLQGFCPDAVTMIN 420

Query: 235 VQS-CNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMP 293
           V S C  M  G++  GR   A    D   V     +  MID     G +  A  L  +MP
Sbjct: 421 VLSACTHM--GFVEEGRRYFANMERDYGVVPQIEHYGCMIDLLGRGGLIKEAVDLIKSMP 478

Query: 294 -DRDAVAWTAMISG 306
            D + V W +++S 
Sbjct: 479 WDPNEVIWGSLLSA 492


>gi|413922867|gb|AFW62799.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 882

 Score =  281 bits (719), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 189/628 (30%), Positives = 303/628 (48%), Gaps = 57/628 (9%)

Query: 18  ITKYSKRGFIDEAKALFQ----LMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEM----- 68
           +  Y   G +DEA+ +F     +  +RN VS+N M+S +++N +  +A  +F EM     
Sbjct: 142 VAVYGGFGMVDEARRMFDEYVGVGGERNAVSWNTMISAYVKNDQSGDAIGVFREMVWSGE 201

Query: 69  -PERNVVSWTAMIC-GLAD--AGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEAR 124
            P     S     C G  D  AGR      +     E++V + N++V    + G++  A 
Sbjct: 202 RPNEFGFSCVVNACTGSRDLEAGRQVHG-AVVRTGYEKDVFTANALVDMYSKLGDIEMAA 260

Query: 125 KVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEER----NVVTWTSMISG----- 175
            VF  MP  +V+SWNA I+G V       A+ L  +M+      NV T +S++       
Sbjct: 261 TVFEKMPAADVVSWNAFISGCVTHGHDHRALELLLQMKSSGLVPNVFTLSSVLKACAGAG 320

Query: 176 ------------------------------YCRAGEVEEGYCLFRRMPRKNVVSWTAMIG 205
                                         Y + G +++   +F  MPR++++ W A+I 
Sbjct: 321 AFNLGRQIHGFMVKAVADFDEFVAVGLVDMYAKHGFLDDARKVFDFMPRRDLILWNALIS 380

Query: 206 GFAWNGFHKESLLLFIEMK--GICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPV 263
           G + +G H E L LF  M+  G+  + N   + S               +   L + + +
Sbjct: 381 GCSHDGRHGEVLSLFHRMRKEGLDLDVNRTTLASVLKSTASSEAICHTRQVHALAEKIGL 440

Query: 264 -RDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFME 322
             D      +ID Y   GQ+  A  +F      D ++ T M++ L Q +   +A  LF++
Sbjct: 441 LSDSHVINGLIDSYWKCGQLDYAIKVFKESRSDDIISSTTMMTALSQCDHGEDAIKLFVQ 500

Query: 323 MRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGV 382
           M   G+ P +   S L  A  + +  + G+Q+H  L+K +  SD+   N L+  YAKCG 
Sbjct: 501 MLRKGLEPDSFVLSSLLNACTSLSAYEQGKQVHAHLIKRQFTSDVFAGNALVYAYAKCGS 560

Query: 383 IDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSA 442
           I++A   FS +  R +VSW++M+ G + HG     L +F  ML+ G  PN +T   +LSA
Sbjct: 561 IEDADMAFSGLPERGIVSWSAMIGGLAQHGHGKRALDLFHRMLDEGVAPNHITLTSVLSA 620

Query: 443 CSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHR 502
           C+HAGLV    + F +M + + I    EHY  MI++LGRAGK+++A E V  +PF+ +  
Sbjct: 621 CNHAGLVDDAKKYFESMKETFGIDRTEEHYACMIDILGRAGKLEDAMELVNNMPFQANAA 680

Query: 503 IWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDM 562
           +WGALLGA      + E+   AA++L  L+P  +  HV+L N YA++G   E  K+R  M
Sbjct: 681 VWGALLGA-SRVHRDPELGRMAAEKLFTLEPEKSGTHVLLANTYASAGMWDEMAKVRKLM 739

Query: 563 GLKGVRKVPGCSWLMRNGGIQMFLSGDK 590
               V+K P  SW+     +  F+ GDK
Sbjct: 740 KDSNVKKEPAMSWVEIKDKVHTFIVGDK 767



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 153/605 (25%), Positives = 258/605 (42%), Gaps = 102/605 (16%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNV---- 73
           +T YS+      A+A+F  +P    VS++++++ +  NG   +A   F  M  R V    
Sbjct: 44  LTLYSRCRLPSAARAVFDEIPDPCHVSWSSLVTAYSNNGMPRDALLAFRAMRGRGVPCNE 103

Query: 74  ------------VSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELN 121
                       V + A +  LA A R+             +V   N++V      G ++
Sbjct: 104 FALPVVLKCAPDVRFGAQVHALAVATRLVH-----------DVFVANALVAVYGGFGMVD 152

Query: 122 EARKVFNSM----PIKNVISWNAMIAGYVECCMMGEAIVLFEEM---------------- 161
           EAR++F+        +N +SWN MI+ YV+    G+AI +F EM                
Sbjct: 153 EARRMFDEYVGVGGERNAVSWNTMISAYVKNDQSGDAIGVFREMVWSGERPNEFGFSCVV 212

Query: 162 -----------------------EERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVV 198
                                   E++V T  +++  Y + G++E    +F +MP  +VV
Sbjct: 213 NACTGSRDLEAGRQVHGAVVRTGYEKDVFTANALVDMYSKLGDIEMAATVFEKMPAADVV 272

Query: 199 SWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMIN-----GYIRFGRLEE 253
           SW A I G   +G    +L L ++MK    +G   NV + +S++      G    GR + 
Sbjct: 273 SWNAFISGCVTHGHDHRALELLLQMKS---SGLVPNVFTLSSVLKACAGAGAFNLGR-QI 328

Query: 254 AQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELF 313
              +   V   DE     ++D Y   G + +A  +F  MP RD + W A+ISG   +   
Sbjct: 329 HGFMVKAVADFDEFVAVGLVDMYAKHGFLDDARKVFDFMPRRDLILWNALISGCSHDGRH 388

Query: 314 VEATYLFMEMRAHGVP-PLN-ATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILEN 371
            E   LF  MR  G+   +N  T + +  +  ++  I   RQ+H +  K    SD  + N
Sbjct: 389 GEVLSLFHRMRKEGLDLDVNRTTLASVLKSTASSEAICHTRQVHALAEKIGLLSDSHVIN 448

Query: 372 CLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHP 431
            LI  Y KCG +D A  +F    S D++S  +M+   S      + +K+F  ML  G  P
Sbjct: 449 GLIDSYWKCGQLDYAIKVFKESRSDDIISSTTMMTALSQCDHGEDAIKLFVQMLRKGLEP 508

Query: 432 NSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYV--SMINLLGRAGKIKEAE 489
           +S     +L+AC+      +G ++   +    K Q   + +   +++    + G I++A+
Sbjct: 509 DSFVLSSLLNACTSLSAYEQGKQVHAHLI---KRQFTSDVFAGNALVYAYAKCGSIEDAD 565

Query: 490 EFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHA-AKRLLE-----LDPLNAPAHVVLC 543
                LP E     W A++G          +A+H   KR L+     LD   AP H+ L 
Sbjct: 566 MAFSGLP-ERGIVSWSAMIGG---------LAQHGHGKRALDLFHRMLDEGVAPNHITLT 615

Query: 544 NIYAA 548
           ++ +A
Sbjct: 616 SVLSA 620



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 97/347 (27%), Positives = 166/347 (47%), Gaps = 14/347 (4%)

Query: 172 MISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGN 231
           +++ Y R         +F  +P    VSW++++  ++ NG  +++LL F  M+G    G 
Sbjct: 43  LLTLYSRCRLPSAARAVFDEIPDPCHVSWSSLVTAYSNNGMPRDALLAFRAMRG---RGV 99

Query: 232 NCNVQSCNSMINGY--IRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLF 289
            CN  +   ++     +RFG    A  +  T  V D     +++  Y   G V  A  +F
Sbjct: 100 PCNEFALPVVLKCAPDVRFGAQVHALAVA-TRLVHDVFVANALVAVYGGFGMVDEARRMF 158

Query: 290 HNM----PDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGAT 345
                   +R+AV+W  MIS  V+N+   +A  +F EM   G  P    FS +  A   +
Sbjct: 159 DEYVGVGGERNAVSWNTMISAYVKNDQSGDAIGVFREMVWSGERPNEFGFSCVVNACTGS 218

Query: 346 ANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMV 405
            +++ GRQ+H  +++T  E D+   N L+ MY+K G I+ A  +F  M + D+VSWN+ +
Sbjct: 219 RDLEAGRQVHGAVVRTGYEKDVFTANALVDMYSKLGDIEMAATVFEKMPAADVVSWNAFI 278

Query: 406 MGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKI 465
            G   HG  +  L++   M  SG  PN  T   +L AC+ AG  + G ++   M  V  +
Sbjct: 279 SGCVTHGHDHRALELLLQMKSSGLVPNVFTLSSVLKACAGAGAFNLGRQIHGFM--VKAV 336

Query: 466 QPGPEHY-VSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGAC 511
               E   V ++++  + G + +A +    +P   D  +W AL+  C
Sbjct: 337 ADFDEFVAVGLVDMYAKHGFLDDARKVFDFMP-RRDLILWNALISGC 382



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 67/281 (23%), Positives = 122/281 (43%), Gaps = 48/281 (17%)

Query: 239 NSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAV 298
           N ++  Y R      A+ +FD +P    +SW+S++  Y + G           MP RDA+
Sbjct: 41  NHLLTLYSRCRLPSAARAVFDEIPDPCHVSWSSLVTAYSNNG-----------MP-RDAL 88

Query: 299 AWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVL 358
                                F  MR  GVP       V+   A    ++  G Q+H + 
Sbjct: 89  -------------------LAFRAMRGRGVPCNEFALPVVLKCA---PDVRFGAQVHALA 126

Query: 359 MKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVS----RDLVSWNSMVMGFSHHGLA 414
           + T    D+ + N L+++Y   G++D A  +F   V     R+ VSWN+M+  +  +  +
Sbjct: 127 VATRLVHDVFVANALVAVYGGFGMVDEARRMFDEYVGVGGERNAVSWNTMISAYVKNDQS 186

Query: 415 NETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYV- 473
            + + VF  M+ SG  PN   F  +++AC+ +  +  G ++  A+     ++ G E  V 
Sbjct: 187 GDAIGVFREMVWSGERPNEFGFSCVVNACTGSRDLEAGRQVHGAV-----VRTGYEKDVF 241

Query: 474 ---SMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGAC 511
              +++++  + G I+ A     ++P   D   W A +  C
Sbjct: 242 TANALVDMYSKLGDIEMAATVFEKMP-AADVVSWNAFISGC 281



 Score = 39.7 bits (91), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 25/92 (27%), Positives = 47/92 (51%), Gaps = 6/92 (6%)

Query: 343 GATANIDLGRQIHCVLMKTESESDLI--LENCLISMYAKCGVIDNAYNIFSNMVSRDLVS 400
           G + ++  G  +H  L+K    S L+    N L+++Y++C +   A  +F  +     VS
Sbjct: 15  GTSRSLFAGAHLHSHLLK----SGLLAGFSNHLLTLYSRCRLPSAARAVFDEIPDPCHVS 70

Query: 401 WNSMVMGFSHHGLANETLKVFESMLESGTHPN 432
           W+S+V  +S++G+  + L  F +M   G   N
Sbjct: 71  WSSLVTAYSNNGMPRDALLAFRAMRGRGVPCN 102


>gi|147834283|emb|CAN67492.1| hypothetical protein VITISV_035978 [Vitis vinifera]
          Length = 814

 Score =  281 bits (719), Expect = 7e-73,   Method: Compositional matrix adjust.
 Identities = 181/590 (30%), Positives = 291/590 (49%), Gaps = 33/590 (5%)

Query: 41  NVVSYNAMLSGF----LQNGRLSEARRLFEEMPERNVVSW------------TAMICGLA 84
           +VV+ +A+L  +    +QN  L     LF+EM +  V +             T ++ G A
Sbjct: 192 DVVTGSALLDMYAKCCVQNDDLRGGLELFKEMQKAGVGALQLHGHALKTDFGTDVVIGTA 251

Query: 85  --DAGRVCE-----ARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVIS 137
             D    C      + +LF  +P  N+ S+N+++VG  R+ +  EA  +F  +    +  
Sbjct: 252 TLDMYMKCNNLSDCSNQLFNSLPNHNLQSYNAIIVGYARSDKGIEALGMFRLLQKSGLGL 311

Query: 138 WNAMIAGYVECC--MMGEAIVL------FEEMEERNVVTWTSMISGYCRAGEVEEGYCLF 189
               ++G    C  + G+   L       + + + N+    +++  Y + G + E   +F
Sbjct: 312 DEVSLSGAXRACAVIKGDLEGLQVHGLSMKSLCQSNICVANAILDMYGKCGALVEACLVF 371

Query: 190 RRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFG 249
             M  ++ VSW A+I     NG  +++L LF+ M       +     S      G+    
Sbjct: 372 EEMVSRDAVSWNAIIAAHEQNGNEEKTLSLFVWMLQSGMEPDEFTYGSVLKACAGWQALN 431

Query: 250 RLEEAQN-LFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLV 308
              E  N +  +    D     ++ID Y   G +  A  L   + ++  V+W A+ISG  
Sbjct: 432 CGMEIHNRIIKSRMGLDSFVGIALIDMYSKCGMMEKAEKLHDRLAEQTVVSWNAIISGFS 491

Query: 309 QNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLI 368
             +   EA   F +M   GV P N T++ +         ++LG+QIH  ++K E +SD  
Sbjct: 492 LQKQSEEAQKTFSKMLEMGVDPDNFTYATILDTCANLVTVELGKQIHAQIIKKELQSDAY 551

Query: 369 LENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESG 428
           + + L+ MY+KCG + +   IF    +RD V+WN+MV G++ HGL  E LK+FE M    
Sbjct: 552 ISSTLVDMYSKCGNMQDFQLIFEKAPNRDFVTWNAMVCGYAQHGLGEEALKIFEYMQLEN 611

Query: 429 THPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEA 488
             PN  TFL +L AC H GLV +G   F++M   Y + P  EHY  +++++GR+G++ +A
Sbjct: 612 VKPNHATFLAVLRACGHMGLVEKGLHYFHSMLSNYGLDPQLEHYSCVVDIMGRSGQVSKA 671

Query: 489 EEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAA 548
            E +  +PFE D  IW  LL  C    GN E+AE AA  +L+L+P ++ A+V+L NIYA 
Sbjct: 672 LELIEGMPFEADAVIWRTLLSXCKI-HGNVEVAEKAAYSILQLEPEDSAAYVLLSNIYAN 730

Query: 549 SGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
           +G   E  KLR  M   G++K PGCSW+     +  FL GDK   +  EI
Sbjct: 731 AGMWNEVTKLRKMMRFNGLKKEPGCSWIEIKSEVHAFLVGDKAHPRSKEI 780



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 131/564 (23%), Positives = 251/564 (44%), Gaps = 64/564 (11%)

Query: 41  NVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMP 100
            V   N ++  +++   L  A ++F+ MP+R+ VSW AM+ G A  G +  A+KLF+ MP
Sbjct: 76  TVFVTNCLIQMYIKCSDLGFAFKVFDGMPQRDTVSWNAMLFGYAGRGDIGVAQKLFDAMP 135

Query: 101 ER----------------NVVSWNSMVVGLIRNGELNE--ARKVFNSMPIK-----NVIS 137
                              V    +  V L     L +       + + +K     +V++
Sbjct: 136 GTGCGVVELFDFRMGRMGTVFDRTTFAVVLKSCSSLEDHGGGIQIHGLAVKMGFDCDVVT 195

Query: 138 WNAMIAGYVECCMMGE----AIVLFEEMEE------------------RNVVTWTSMISG 175
            +A++  Y +CC+  +     + LF+EM++                   +VV  T+ +  
Sbjct: 196 GSALLDMYAKCCVQNDDLRGGLELFKEMQKAGVGALQLHGHALKTDFGTDVVIGTATLDM 255

Query: 176 YCRAGEVEE-GYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLF--IEMKGI-CDNGN 231
           Y +   + +    LF  +P  N+ S+ A+I G+A +    E+L +F  ++  G+  D  +
Sbjct: 256 YMKCNNLSDCSNQLFNSLPNHNLQSYNAIIVGYARSDKGIEALGMFRLLQKSGLGLDEVS 315

Query: 232 NCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHN 291
                   ++I G +    L+       ++   +     +++D Y   G +  A  +F  
Sbjct: 316 LSGAXRACAVIKGDLE--GLQVHGLSMKSLCQSNICVANAILDMYGKCGALVEACLVFEE 373

Query: 292 MPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLG 351
           M  RDAV+W A+I+   QN    +   LF+ M   G+ P   T+  +  A      ++ G
Sbjct: 374 MVSRDAVSWNAIIAAHEQNGNEEKTLSLFVWMLQSGMEPDEFTYGSVLKACAGWQALNCG 433

Query: 352 RQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHH 411
            +IH  ++K+    D  +   LI MY+KCG+++ A  +   +  + +VSWN+++ GFS  
Sbjct: 434 MEIHNRIIKSRMGLDSFVGIALIDMYSKCGMMEKAEKLHDRLAEQTVVSWNAIISGFSLQ 493

Query: 412 GLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEH 471
             + E  K F  MLE G  P++ T+  IL  C++   V  G ++      + K +   + 
Sbjct: 494 KQSEEAQKTFSKMLEMGVDPDNFTYATILDTCANLVTVELGKQIHA---QIIKKELQSDA 550

Query: 472 YVS--MINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAK--R 527
           Y+S  ++++  + G +++ +    + P   D   W A++  CG+ +    + E A K   
Sbjct: 551 YISSTLVDMYSKCGNMQDFQLIFEKAP-NRDFVTWNAMV--CGYAQHG--LGEEALKIFE 605

Query: 528 LLELDPLNAPAHVVLCNIYAASGR 551
            ++L+ +  P H     +  A G 
Sbjct: 606 YMQLENVK-PNHATFLAVLRACGH 628



 Score =  135 bits (340), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 140/555 (25%), Positives = 253/555 (45%), Gaps = 92/555 (16%)

Query: 29  EAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGR 88
           ++K+ F+ +P     SY A  +      +      +F+E  +R  +            G+
Sbjct: 19  QSKSPFKTLPISPFSSYQATPT------KKKTFSHIFQECSDRKALC----------PGK 62

Query: 89  VCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVEC 148
              AR +  E      V+ N ++   I+  +L  A KVF+ MP ++ +SWNAM+ GY   
Sbjct: 63  QAHARMILTEFKPTVFVT-NCLIQMYIKCSDLGFAFKVFDGMPQRDTVSWNAMLFGYAGR 121

Query: 149 CMMGEAIVLFEEMEER--NVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMI-- 204
             +G A  LF+ M      VV       G  R G V      F R     V+   + +  
Sbjct: 122 GDIGVAQKLFDAMPGTGCGVVELFDFRMG--RMGTV------FDRTTFAVVLKSCSSLED 173

Query: 205 --GGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIR--------------- 247
             GG   +G       L ++M      G +C+V + +++++ Y +               
Sbjct: 174 HGGGIQIHG-------LAVKM------GFDCDVVTGSALLDMYAKCCVQNDDLRGGLELF 220

Query: 248 -------FGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSN-AYYLFHNMPDRDAVA 299
                   G L+   +   T    D +  T+ +D Y+    +S+ +  LF+++P+ +  +
Sbjct: 221 KEMQKAGVGALQLHGHALKTDFGTDVVIGTATLDMYMKCNNLSDCSNQLFNSLPNHNLQS 280

Query: 300 WTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANI--DL-GRQIHC 356
           + A+I G  +++  +EA  +F  ++  G+     + S   GA  A A I  DL G Q+H 
Sbjct: 281 YNAIIVGYARSDKGIEALGMFRLLQKSGLGLDEVSLS---GAXRACAVIKGDLEGLQVHG 337

Query: 357 VLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANE 416
           + MK+  +S++ + N ++ MY KCG +  A  +F  MVSRD VSWN+++     +G   +
Sbjct: 338 LSMKSLCQSNICVANAILDMYGKCGALVEACLVFEEMVSRDAVSWNAIIAAHEQNGNEEK 397

Query: 417 TLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVY----KIQPGPEHY 472
           TL +F  ML+SG  P+  T+  +L AC+       GW+  N   +++    K + G + +
Sbjct: 398 TLSLFVWMLQSGMEPDEFTYGSVLKACA-------GWQALNCGMEIHNRIIKSRMGLDSF 450

Query: 473 V--SMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFC-EGNAEIAEHAAKRLL 529
           V  ++I++  + G +++AE+   RL  E     W A++   GF  +  +E A+    ++L
Sbjct: 451 VGIALIDMYSKCGMMEKAEKLHDRLA-EQTVVSWNAIIS--GFSLQKQSEEAQKTFSKML 507

Query: 530 EL--DPLNAPAHVVL 542
           E+  DP N     +L
Sbjct: 508 EMGVDPDNFTYATIL 522



 Score =  105 bits (263), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 109/444 (24%), Positives = 193/444 (43%), Gaps = 48/444 (10%)

Query: 39  QRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLF-- 96
           Q N+   NA+L  + + G L EA  +FEEM  R+ VSW A+I      G   +   LF  
Sbjct: 345 QSNICVANAILDMYGKCGALVEACLVFEEMVSRDAVSWNAIIAAHEQNGNEEKTLSLFVW 404

Query: 97  --EEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWN-----AMIAGYVECC 149
             +   E +  ++ S++        LN   ++ N + IK+ +  +     A+I  Y +C 
Sbjct: 405 MLQSGMEPDEFTYGSVLKACAGWQALNCGMEIHNRI-IKSRMGLDSFVGIALIDMYSKCG 463

Query: 150 MMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAW 209
           MM +A  L + + E+ VV+W ++ISG+    + EE    F +M                 
Sbjct: 464 MMEKAEKLHDRLAEQTVVSWNAIISGFSLQKQSEEAQKTFSKM----------------- 506

Query: 210 NGFHKESLLLFIEMKGICDNGNNCNV-QSCNSMINGYIRFGRLEEAQNLFDTVPVRDEIS 268
                      +EM    DN     +  +C +++   +  G+   AQ +   +     IS
Sbjct: 507 -----------LEMGVDPDNFTYATILDTCANLVT--VELGKQIHAQIIKKELQSDAYIS 553

Query: 269 WTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGV 328
            ++++D Y   G + +   +F   P+RD V W AM+ G  Q+ L  EA  +F  M+   V
Sbjct: 554 -STLVDMYSKCGNMQDFQLIFEKAPNRDFVTWNAMVCGYAQHGLGEEALKIFEYMQLENV 612

Query: 329 PPLNATFSVLFGAAGATANIDLG-RQIHCVLMKTESESDLILENCLISMYAKCGVIDNAY 387
            P +ATF  +  A G    ++ G    H +L     +  L   +C++ +  + G +  A 
Sbjct: 613 KPNHATFLAVLRACGHMGLVEKGLHYFHSMLSNYGLDPQLEHYSCVVDIMGRSGQVSKAL 672

Query: 388 NIFSNM-VSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHP-NSVTFLGILSACSH 445
            +   M    D V W +++     HG      K   S+L+    P +S  ++ + +  ++
Sbjct: 673 ELIEGMPFEADAVIWRTLLSXCKIHGNVEVAEKAAYSILQ--LEPEDSAAYVLLSNIYAN 730

Query: 446 AGLVSRGWELFNAM-FDVYKIQPG 468
           AG+ +   +L   M F+  K +PG
Sbjct: 731 AGMWNEVTKLRKMMRFNGLKKEPG 754



 Score = 92.0 bits (227), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 80/339 (23%), Positives = 153/339 (45%), Gaps = 58/339 (17%)

Query: 21  YSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPE---------- 70
           Y K G + EA  +F+ M  R+ VS+NA+++   QNG   +   LF  M +          
Sbjct: 358 YGKCGALVEACLVFEEMVSRDAVSWNAIIAAHEQNGNEEKTLSLFVWMLQSGMEPDEFTY 417

Query: 71  ----RNVVSWTAMICGLADAGRVCEAR-------------------------KLFEEMPE 101
               +    W A+ CG+    R+ ++R                         KL + + E
Sbjct: 418 GSVLKACAGWQALNCGMEIHNRIIKSRMGLDSFVGIALIDMYSKCGMMEKAEKLHDRLAE 477

Query: 102 RNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCM------MGEAI 155
           + VVSWN+++ G     +  EA+K F+ M    V   N   A  ++ C       +G+ I
Sbjct: 478 QTVVSWNAIISGFSLQKQSEEAQKTFSKMLEMGVDPDNFTYATILDTCANLVTVELGKQI 537

Query: 156 ---VLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGF 212
              ++ +E++    ++ ++++  Y + G +++   +F + P ++ V+W AM+ G+A +G 
Sbjct: 538 HAQIIKKELQSDAYIS-STLVDMYSKCGNMQDFQLIFEKAPNRDFVTWNAMVCGYAQHGL 596

Query: 213 HKESLLLFIEMKGICDNGNNCN----VQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEIS 268
            +E+L +F  M+      N+      +++C  M  G +  G L    ++     +  ++ 
Sbjct: 597 GEEALKIFEYMQLENVKPNHATFLAVLRACGHM--GLVEKG-LHYFHSMLSNYGLDPQLE 653

Query: 269 -WTSMIDGYLSVGQVSNAYYLFHNMP-DRDAVAWTAMIS 305
            ++ ++D     GQVS A  L   MP + DAV W  ++S
Sbjct: 654 HYSCVVDIMGRSGQVSKALELIEGMPFEADAVIWRTLLS 692



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 50/188 (26%), Positives = 98/188 (52%), Gaps = 14/188 (7%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNV---- 73
           I  YSK G +++A+ L   + ++ VVS+NA++SGF    +  EA++ F +M E  V    
Sbjct: 456 IDMYSKCGMMEKAEKLHDRLAEQTVVSWNAIISGFSLQKQSEEAQKTFSKMLEMGVDPDN 515

Query: 74  VSWTAMICGLA-----DAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFN 128
            ++  ++   A     + G+   A+ + +E+     +S +++V    + G + + + +F 
Sbjct: 516 FTYATILDTCANLVTVELGKQIHAQIIKKELQSDAYIS-STLVDMYSKCGNMQDFQLIFE 574

Query: 129 SMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNV----VTWTSMISGYCRAGEVEE 184
             P ++ ++WNAM+ GY +  +  EA+ +FE M+  NV     T+ +++      G VE+
Sbjct: 575 KAPNRDFVTWNAMVCGYAQHGLGEEALKIFEYMQLENVKPNHATFLAVLRACGHMGLVEK 634

Query: 185 GYCLFRRM 192
           G   F  M
Sbjct: 635 GLHYFHSM 642



 Score = 52.8 bits (125), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 53/225 (23%), Positives = 104/225 (46%), Gaps = 32/225 (14%)

Query: 15  TSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNV- 73
           ++ +  YSK G + + + +F+  P R+ V++NAM+ G+ Q+G   EA ++FE M   NV 
Sbjct: 554 STLVDMYSKCGNMQDFQLIFEKAPNRDFVTWNAMVCGYAQHGLGEEALKIFEYMQLENVK 613

Query: 74  ---VSWTAMICGLADAGRVCEARKLFEEM-----PERNVVSWNSMVVGLIRNGELNEARK 125
               ++ A++      G V +    F  M      +  +  ++ +V  + R+G++++A +
Sbjct: 614 PNHATFLAVLRACGHMGLVEKGLHYFHSMLSNYGLDPQLEHYSCVVDIMGRSGQVSKALE 673

Query: 126 VFNSMPIK-NVISWNAMIA-----GYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRA 179
           +   MP + + + W  +++     G VE        +L  ++E  +   +  + + Y  A
Sbjct: 674 LIEGMPFEADAVIWRTLLSXCKIHGNVEVAEKAAYSIL--QLEPEDSAAYVLLSNIYANA 731

Query: 180 GEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMK 224
           G   E   L R+M R              +NG  KE    +IE+K
Sbjct: 732 GMWNEVTKL-RKMMR--------------FNGLKKEPGCSWIEIK 761


>gi|356574473|ref|XP_003555371.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Glycine max]
          Length = 923

 Score =  281 bits (719), Expect = 7e-73,   Method: Compositional matrix adjust.
 Identities = 181/634 (28%), Positives = 316/634 (49%), Gaps = 54/634 (8%)

Query: 18  ITKYSKRGFIDEAKALFQ--LMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPE----R 71
           I  Y K G +  A+ LF   +M + + VS+N+++S  +  G+  EA  LF  M E     
Sbjct: 187 IAMYGKCGDLGGARVLFDGIMMEKEDTVSWNSIISAHVTEGKCLEALSLFRRMQEVGVAS 246

Query: 72  NVVSWTAMICGLADAGRVCEARKLFEEMPERN----VVSWNSMVVGLIRNGELNEARKVF 127
           N  ++ A + G+ D   V     +     + N    V   N+++    + G + +A +VF
Sbjct: 247 NTYTFVAALQGVEDPSFVKLGMGIHGAALKSNHFADVYVANALIAMYAKCGRMEDAERVF 306

Query: 128 NSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEME----ERNVVTWTSMISGYCRAGEVE 183
            SM  ++ +SWN +++G V+  +  +A+  F +M+    + + V+  ++I+   R+G + 
Sbjct: 307 ASMLCRDYVSWNTLLSGLVQNELYRDALNYFRDMQNSAQKPDQVSVLNLIAASGRSGNLL 366

Query: 184 EG-----YCL------------------------------FRRMPRKNVVSWTAMIGGFA 208
            G     Y +                              F  M  K+++SWT +I G+A
Sbjct: 367 NGKEVHAYAIRNGLDSNMQIGNTLIDMYAKCCCVKHMGYAFECMHEKDLISWTTIIAGYA 426

Query: 209 WNGFHKESLLLF--IEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDE 266
            N  H E++ LF  +++KG+  + +   + S     +G      + E         + D 
Sbjct: 427 QNECHLEAINLFRKVQVKGM--DVDPMMIGSVLRACSGLKSRNFIREIHGYVFKRDLADI 484

Query: 267 ISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAH 326
           +   ++++ Y  VG    A   F ++  +D V+WT+MI+  V N L VEA  LF  ++  
Sbjct: 485 MLQNAIVNVYGEVGHRDYARRAFESIRSKDIVSWTSMITCCVHNGLPVEALELFYSLKQT 544

Query: 327 GVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNA 386
            + P +        A    +++  G++IH  L++     +  + + L+ MYA CG ++N+
Sbjct: 545 NIQPDSIAIISALSATANLSSLKKGKEIHGFLIRKGFFLEGPIASSLVDMYACCGTVENS 604

Query: 387 YNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHA 446
             +F ++  RDL+ W SM+     HG  NE + +F+ M +    P+ +TFL +L ACSH+
Sbjct: 605 RKMFHSVKQRDLILWTSMINANGMHGCGNEAIALFKKMTDENVIPDHITFLALLYACSHS 664

Query: 447 GLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGA 506
           GL+  G   F  M   Y+++P PEHY  M++LL R+  ++EA +FV  +P +P   +W A
Sbjct: 665 GLMVEGKRFFEIMKYGYQLEPWPEHYACMVDLLSRSNSLEEAYQFVRSMPIKPSSEVWCA 724

Query: 507 LLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKG 566
           LLGAC     N E+ E AAK LL+ D  N+  + ++ NI+AA GR  +  ++R+ M   G
Sbjct: 725 LLGACHI-HSNKELGELAAKELLQSDTKNSGKYALISNIFAADGRWNDVEEVRLRMKGNG 783

Query: 567 VRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEILL 600
           ++K PGCSW+  +  I  F++ DK   Q  +I L
Sbjct: 784 LKKNPGCSWIEVDNKIHTFMARDKSHPQTDDIYL 817



 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 143/595 (24%), Positives = 260/595 (43%), Gaps = 91/595 (15%)

Query: 6   HPKSLVVHLTSSITK-----YSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSE 60
           H + L  HL++ +       Y K G + +A  +F  M +R + ++NAM+  F+ +G+  E
Sbjct: 69  HARLLKSHLSAFLATKLLHMYEKCGSLKDAVKVFDEMTERTIFTWNAMMGAFVSSGKYLE 128

Query: 61  ARRLFEEMPERNV-------------------------VSWTAMICGLADAGRVCE---- 91
           A  L++EM    V                         +   A+ CG  +   VC     
Sbjct: 129 AIELYKEMRVLGVAIDACTFPSVLKACGALGESRLGAEIHGVAVKCGFGEFVFVCNALIA 188

Query: 92  ----------ARKLFEE--MPERNVVSWNSMVVGLIRNGELNEARKVFNSMP----IKNV 135
                     AR LF+   M + + VSWNS++   +  G+  EA  +F  M       N 
Sbjct: 189 MYGKCGDLGGARVLFDGIMMEKEDTVSWNSIISAHVTEGKCLEALSLFRRMQEVGVASNT 248

Query: 136 ISWNAMIAGYVECCM----MGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRR 191
            ++ A + G  +       MG      +     +V    ++I+ Y + G +E+   +F  
Sbjct: 249 YTFVAALQGVEDPSFVKLGMGIHGAALKSNHFADVYVANALIAMYAKCGRMEDAERVFAS 308

Query: 192 MPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQS--CNSMINGYIRFG 249
           M  ++ VSW  ++ G   N  ++++L  F +M+      +  +V +    S  +G +  G
Sbjct: 309 MLCRDYVSWNTLLSGLVQNELYRDALNYFRDMQNSAQKPDQVSVLNLIAASGRSGNLLNG 368

Query: 250 RLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQ 309
           +   A  + + +    +I  T +ID Y     V +  Y F  M ++D ++WT +I+G  Q
Sbjct: 369 KEVHAYAIRNGLDSNMQIGNT-LIDMYAKCCCVKHMGYAFECMHEKDLISWTTIIAGYAQ 427

Query: 310 NELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLIL 369
           NE  +EA  LF +++  G+         +  A     + +  R+IH  + K +  +D++L
Sbjct: 428 NECHLEAINLFRKVQVKGMDVDPMMIGSVLRACSGLKSRNFIREIHGYVFKRDL-ADIML 486

Query: 370 ENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGT 429
           +N ++++Y + G  D A   F ++ S+D+VSW SM+    H+GL  E L++F S+ ++  
Sbjct: 487 QNAIVNVYGEVGHRDYARRAFESIRSKDIVSWTSMITCCVHNGLPVEALELFYSLKQTNI 546

Query: 430 HPNSVTFLGILSACSHAGLVSRGWELF---------------NAMFDVYKIQPGPEH--- 471
            P+S+  +  LSA ++   + +G E+                +++ D+Y      E+   
Sbjct: 547 QPDSIAIISALSATANLSSLKKGKEIHGFLIRKGFFLEGPIASSLVDMYACCGTVENSRK 606

Query: 472 ------------YVSMINLLGRAGKIKEAEEFVLRLPFE---PDHRIWGALLGAC 511
                       + SMIN  G  G   EA     ++  E   PDH  + ALL AC
Sbjct: 607 MFHSVKQRDLILWTSMINANGMHGCGNEAIALFKKMTDENVIPDHITFLALLYAC 661



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 84/287 (29%), Positives = 126/287 (43%), Gaps = 13/287 (4%)

Query: 270 TSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVP 329
           T ++  Y   G + +A  +F  M +R    W AM+   V +  ++EA  L+ EMR  GV 
Sbjct: 83  TKLLHMYEKCGSLKDAVKVFDEMTERTIFTWNAMMGAFVSSGKYLEAIELYKEMRVLGVA 142

Query: 330 PLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNI 389
               TF  +  A GA     LG +IH V +K      + + N LI+MY KCG +  A  +
Sbjct: 143 IDACTFPSVLKACGALGESRLGAEIHGVAVKCGFGEFVFVCNALIAMYGKCGDLGGARVL 202

Query: 390 FSN--MVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAG 447
           F    M   D VSWNS++      G   E L +F  M E G   N+ TF+  L       
Sbjct: 203 FDGIMMEKEDTVSWNSIISAHVTEGKCLEALSLFRRMQEVGVASNTYTFVAALQGVEDPS 262

Query: 448 LVSRGWELFNAMFDVYKIQPGPEHYV--SMINLLGRAGKIKEAEEFVLRLPFEPDHRIWG 505
            V  G  +  A     K     + YV  ++I +  + G++++AE  V       D+  W 
Sbjct: 263 FVKLGMGIHGAAL---KSNHFADVYVANALIAMYAKCGRMEDAER-VFASMLCRDYVSWN 318

Query: 506 ALLGACGFCEGNAEIAEHAAKRLLEL-DPLNAPAHVVLCNIYAASGR 551
            LL   G  +   E+   A     ++ +    P  V + N+ AASGR
Sbjct: 319 TLLS--GLVQN--ELYRDALNYFRDMQNSAQKPDQVSVLNLIAASGR 361



 Score = 62.4 bits (150), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 45/185 (24%), Positives = 83/185 (44%), Gaps = 12/185 (6%)

Query: 331 LNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIF 390
           L    S+L     A   +  G+Q+H  L+K+   +   L   L+ MY KCG + +A  +F
Sbjct: 45  LEHAHSLLLDLCVAVKALPQGQQLHARLLKSHLSA--FLATKLLHMYEKCGSLKDAVKVF 102

Query: 391 SNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVS 450
             M  R + +WN+M+  F   G   E +++++ M   G   ++ TF  +L AC   G   
Sbjct: 103 DEMTERTIFTWNAMMGAFVSSGKYLEAIELYKEMRVLGVAIDACTFPSVLKACGALGESR 162

Query: 451 RGWELFNAMFDVYKIQPGPEHYV----SMINLLGRAGKIKEAEEFVLRLPFEPDHRI-WG 505
            G E+         ++ G   +V    ++I + G+ G +  A      +  E +  + W 
Sbjct: 163 LGAEIHGV-----AVKCGFGEFVFVCNALIAMYGKCGDLGGARVLFDGIMMEKEDTVSWN 217

Query: 506 ALLGA 510
           +++ A
Sbjct: 218 SIISA 222


>gi|414867142|tpg|DAA45699.1| TPA: hypothetical protein ZEAMMB73_401104 [Zea mays]
          Length = 746

 Score =  281 bits (719), Expect = 7e-73,   Method: Compositional matrix adjust.
 Identities = 179/566 (31%), Positives = 295/566 (52%), Gaps = 53/566 (9%)

Query: 41  NVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMP 100
           NV +  +++  +L+ GR++EA R+F+EMPER+V +W AM+ GL    R  +A  L   M 
Sbjct: 101 NVFASGSLVHAYLRFGRVAEAYRVFDEMPERDVPAWNAMLSGLCRNTRAADAVTLLGRMV 160

Query: 101 ERNV----VSWNSMVVGLIRNGELNEARKVFNSMPIKNVISW-----NAMIAGYVECCMM 151
              V    V+ +S++   +  G+   A  V +   +K+ +S      NA+I  Y +  M+
Sbjct: 161 GEGVAGDAVTLSSVLPMCVVLGDRALAL-VMHVYAVKHGLSGELFVCNALIDVYGKLGML 219

Query: 152 GEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRK----NVVSWTAMIGGF 207
            EA  +F  M  R++VTW S+IS   + G+V     LF  M       +V++  ++    
Sbjct: 220 TEAHWVFGGMALRDLVTWNSIISANEQGGKVAAAVELFHGMMESGVCPDVLTLVSLASAV 279

Query: 208 AWNG--FHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRD 265
           A  G     +S+  ++  +G  D G   ++ + N+M++ Y +  +++ AQ +FD +P RD
Sbjct: 280 AQCGDELGAKSVHCYVRRRG-WDVG---DIIAGNAMVDMYAKMSKIDAAQKVFDNLPDRD 335

Query: 266 EISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRA 325
            +SW ++I GY+                               QN L  EA  ++ +M  
Sbjct: 336 VVSWNTLITGYM-------------------------------QNGLANEAIRIYNDMHN 364

Query: 326 H-GVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVID 384
           H G+ P+  TF  +  A      +  G ++H + +KT    D+ +  CLI +YAKCG + 
Sbjct: 365 HEGLKPIQGTFVSVLPAYSYLGGLQQGMRMHALSIKTGLNLDVYVTTCLIDLYAKCGKLV 424

Query: 385 NAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACS 444
            A  +F +M  R    WN+++ G   HG   + L +F  M +    P+ VTF+ +L+ACS
Sbjct: 425 EAMFLFEHMPRRSTGPWNAIIAGLGVHGHGAKALSLFSQMQQEEIKPDHVTFVSLLAACS 484

Query: 445 HAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIW 504
           HAGLV +G   F+ M  VY I P  +HY  M+++LGRAG++ EA EF+  +P +PD  +W
Sbjct: 485 HAGLVDQGRSFFDLMQTVYGIVPIAKHYTCMVDMLGRAGQLDEAFEFIQSMPIKPDSAVW 544

Query: 505 GALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGL 564
           GALLGAC    GN E+ + A++ L ELDP N   +V++ N+YA  G+      +R  +  
Sbjct: 545 GALLGACRI-HGNVEMGKVASQNLFELDPENVGYYVLMSNMYAKIGKWDGVDAVRSLVRR 603

Query: 565 KGVRKVPGCSWLMRNGGIQMFLSGDK 590
           + ++K PG S +   G + +F SG +
Sbjct: 604 QNLQKTPGWSSMEVKGSVSVFYSGTQ 629



 Score =  123 bits (308), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 106/452 (23%), Positives = 188/452 (41%), Gaps = 58/452 (12%)

Query: 16  SSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVS 75
           S +  Y + G + EA  +F  MP+R+V ++NAMLSG  +N R ++A  L   M    V  
Sbjct: 107 SLVHAYLRFGRVAEAYRVFDEMPERDVPAWNAMLSGLCRNTRAADAVTLLGRMVGEGVAG 166

Query: 76  WTAMICGLADAGRVCEARKLFEEMPERNV--------VSWNSMVVGLIRNGELNEARKVF 127
               +  +     V   R L   M    V           N+++    + G L EA  VF
Sbjct: 167 DAVTLSSVLPMCVVLGDRALALVMHVYAVKHGLSGELFVCNALIDVYGKLGMLTEAHWVF 226

Query: 128 NSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEER----------------------- 164
             M ++++++WN++I+   +   +  A+ LF  M E                        
Sbjct: 227 GGMALRDLVTWNSIISANEQGGKVAAAVELFHGMMESGVCPDVLTLVSLASAVAQCGDEL 286

Query: 165 -----------------NVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGF 207
                            +++   +M+  Y +  +++    +F  +P ++VVSW  +I G+
Sbjct: 287 GAKSVHCYVRRRGWDVGDIIAGNAMVDMYAKMSKIDAAQKVFDNLPDRDVVSWNTLITGY 346

Query: 208 AWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNL----FDTVPV 263
             NG   E++ ++ +M      G      +  S++  Y   G L++   +      T   
Sbjct: 347 MQNGLANEAIRIYNDMHN--HEGLKPIQGTFVSVLPAYSYLGGLQQGMRMHALSIKTGLN 404

Query: 264 RDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEM 323
            D    T +ID Y   G++  A +LF +MP R    W A+I+GL  +    +A  LF +M
Sbjct: 405 LDVYVTTCLIDLYAKCGKLVEAMFLFEHMPRRSTGPWNAIIAGLGVHGHGAKALSLFSQM 464

Query: 324 RAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILEN--CLISMYAKCG 381
           +   + P + TF  L  A      +D GR     LM+T      I ++  C++ M  + G
Sbjct: 465 QQEEIKPDHVTFVSLLAACSHAGLVDQGRSFF-DLMQTVYGIVPIAKHYTCMVDMLGRAG 523

Query: 382 VIDNAYNIFSNM-VSRDLVSWNSMVMGFSHHG 412
            +D A+    +M +  D   W +++     HG
Sbjct: 524 QLDEAFEFIQSMPIKPDSAVWGALLGACRIHG 555



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 62/209 (29%), Positives = 103/209 (49%), Gaps = 24/209 (11%)

Query: 15  TSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNV- 73
           T  I  Y+K G + EA  LF+ MP+R+   +NA+++G   +G  ++A  LF +M +  + 
Sbjct: 411 TCLIDLYAKCGKLVEAMFLFEHMPRRSTGPWNAIIAGLGVHGHGAKALSLFSQMQQEEIK 470

Query: 74  ---VSWTAMICGLADAGRVCEARKLFEEMPERNVV-----SWNSMVVGLIRNGELNEARK 125
              V++ +++   + AG V + R  F+ M     +      +  MV  L R G+L+EA +
Sbjct: 471 PDHVTFVSLLAACSHAGLVDQGRSFFDLMQTVYGIVPIAKHYTCMVDMLGRAGQLDEAFE 530

Query: 126 VFNSMPIK-NVISWNAM-----IAGYVECCMMGEAIV--LFEEMEERNVVTWTSMISGYC 177
              SMPIK +   W A+     I G VE   MG+     LF E++  NV  +  M + Y 
Sbjct: 531 FIQSMPIKPDSAVWGALLGACRIHGNVE---MGKVASQNLF-ELDPENVGYYVLMSNMYA 586

Query: 178 RAGE---VEEGYCLFRRMPRKNVVSWTAM 203
           + G+   V+    L RR   +    W++M
Sbjct: 587 KIGKWDGVDAVRSLVRRQNLQKTPGWSSM 615



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 45/170 (26%), Positives = 77/170 (45%), Gaps = 13/170 (7%)

Query: 325 AHGVPPLNATFSVLFGAAGATANIDLGRQIH-CVLMKTESESDLILENCLISMYAKCGVI 383
           AH + P + TF  L  AA   A+     Q+H C L       ++     L+  Y + G +
Sbjct: 62  AHPLRPDSFTFPPLVRAAPGPAS---AAQLHACALRLGLLHPNVFASGSLVHAYLRFGRV 118

Query: 384 DNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSAC 443
             AY +F  M  RD+ +WN+M+ G   +  A + + +   M+  G   ++VT   +L  C
Sbjct: 119 AEAYRVFDEMPERDVPAWNAMLSGLCRNTRAADAVTLLGRMVGEGVAGDAVTLSSVLPMC 178

Query: 444 SHAGLVSRGWELFNAMFDVYKIQPG--PEHYV--SMINLLGRAGKIKEAE 489
                V  G      +  VY ++ G   E +V  ++I++ G+ G + EA 
Sbjct: 179 -----VVLGDRALALVMHVYAVKHGLSGELFVCNALIDVYGKLGMLTEAH 223


>gi|356551872|ref|XP_003544296.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g19720-like [Glycine max]
          Length = 945

 Score =  281 bits (719), Expect = 7e-73,   Method: Compositional matrix adjust.
 Identities = 196/664 (29%), Positives = 308/664 (46%), Gaps = 91/664 (13%)

Query: 15  TSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEM------ 68
           T  ++ Y+K G +DEA+ +F  M +RN+ +++AM+    ++ +  E   LF +M      
Sbjct: 122 TKLVSMYAKCGHLDEARKVFDEMRERNLFTWSAMIGACSRDLKWEEVVELFYDMMQHGVL 181

Query: 69  PERNVVSWTAMICG---------------------------------LADAGRVCEARKL 95
           P+  ++      CG                                  A  G +  A K+
Sbjct: 182 PDDFLLPKVLKACGKFRDIETGRLIHSLVIRGGMCSSLHVNNSILAVYAKCGEMSCAEKI 241

Query: 96  FEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKN----VISWNAMIAGYVECCMM 151
           F  M ERN VSWN ++ G  + GE+ +A+K F++M  +     +++WN +IA Y +    
Sbjct: 242 FRRMDERNCVSWNVIITGYCQRGEIEQAQKYFDAMQEEGMEPGLVTWNILIASYSQLGHC 301

Query: 152 GEAIVLFEEMEE----RNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGF 207
             A+ L  +ME      +V TWTSMISG+ + G + E + L R M    V   +  I   
Sbjct: 302 DIAMDLMRKMESFGITPDVYTWTSMISGFTQKGRINEAFDLLRDMLIVGVEPNSITIASA 361

Query: 208 AWNGFHKESLLLFIEMKGICDNGNNCN-VQSCNSMINGYIRFGRLEEAQNLFDTVPVRDE 266
           A      +SL +  E+  I    +  + +   NS+I+ Y + G LE AQ++FD +  RD 
Sbjct: 362 ASACASVKSLSMGSEIHSIAVKTSMVDDILIGNSLIDMYAKGGDLEAAQSIFDVMLERDV 421

Query: 267 ISWTSMIDGYLSVGQVSNAYYLFHNMPDRDA----VAWTAMISGLVQNELFVEATYLFME 322
            SW S+I GY   G    A+ LF  M + D+    V W  MI+G +QN    EA  LF+ 
Sbjct: 422 YSWNSIIGGYCQAGFCGKAHELFMKMQESDSPPNVVTWNVMITGFMQNGDEDEALNLFLR 481

Query: 323 MRAHG-------------------------------------VPPLNATFSVLFGAAGAT 345
           +   G                                      P L    ++L       
Sbjct: 482 IEKDGKIKPNVASWNSLISGFLQNRQKDKALQIFRQMQFSNMAPNLVTVLTILPACTNLV 541

Query: 346 ANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMV 405
           A   + ++IHC   +    S+L + N  I  YAK G I  +  +F  +  +D++SWNS++
Sbjct: 542 AAKKV-KEIHCCATRRNLVSELSVSNTFIDSYAKSGNIMYSRKVFDGLSPKDIISWNSLL 600

Query: 406 MGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKI 465
            G+  HG +   L +F+ M + G HP+ VT   I+SA SHA +V  G   F+ + + Y+I
Sbjct: 601 SGYVLHGCSESALDLFDQMRKDGLHPSRVTLTSIISAYSHAEMVDEGKHAFSNISEEYQI 660

Query: 466 QPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAA 525
           +   EHY +M+ LLGR+GK+ +A EF+  +P EP+  +W ALL AC     N  +A  A 
Sbjct: 661 RLDLEHYSAMVYLLGRSGKLAKALEFIQNMPVEPNSSVWAALLTACRI-HKNFGMAIFAG 719

Query: 526 KRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMF 585
           + +LELDP N     +L   Y+  G+  E  K+      K V+   G SW+  N  +  F
Sbjct: 720 EHMLELDPENIITQHLLSQAYSVCGKSWEAQKMTKLEKEKFVKMPVGQSWIEMNNMVHTF 779

Query: 586 LSGD 589
           + GD
Sbjct: 780 VVGD 783



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 123/528 (23%), Positives = 219/528 (41%), Gaps = 136/528 (25%)

Query: 12  VHLTSSITK-YSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPE 70
           +H+ +SI   Y+K G +  A+ +F+ M +RN VS+N +++G+ Q G + +A++ F+ M E
Sbjct: 219 LHVNNSILAVYAKCGEMSCAEKIFRRMDERNCVSWNVIITGYCQRGEIEQAQKYFDAMQE 278

Query: 71  R----NVVSWTAMICGLADAGRVCEARKLFEEMPE----RNVVSWNSMVVGLIRNGELNE 122
                 +V+W  +I   +  G    A  L  +M       +V +W SM+ G  + G +NE
Sbjct: 279 EGMEPGLVTWNILIASYSQLGHCDIAMDLMRKMESFGITPDVYTWTSMISGFTQKGRINE 338

Query: 123 ARKVFNSMPI---------------------------------------KNVISWNAMIA 143
           A  +   M I                                        +++  N++I 
Sbjct: 339 AFDLLRDMLIVGVEPNSITIASAASACASVKSLSMGSEIHSIAVKTSMVDDILIGNSLID 398

Query: 144 GYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRK----NVVS 199
            Y +   +  A  +F+ M ER+V +W S+I GYC+AG   + + LF +M       NVV+
Sbjct: 399 MYAKGGDLEAAQSIFDVMLERDVYSWNSIIGGYCQAGFCGKAHELFMKMQESDSPPNVVT 458

Query: 200 WTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFD 259
           W  MI GF  NG   E+L LF+ ++   D     NV S NS+I+G+++  + ++A  +F 
Sbjct: 459 WNVMITGFMQNGDEDEALNLFLRIEK--DGKIKPNVASWNSLISGFLQNRQKDKALQIFR 516

Query: 260 TVPVRD--------------------------------------EISWT-SMIDGYLSVG 280
            +   +                                      E+S + + ID Y   G
Sbjct: 517 QMQFSNMAPNLVTVLTILPACTNLVAAKKVKEIHCCATRRNLVSELSVSNTFIDSYAKSG 576

Query: 281 QVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFG 340
            +  +  +F  +  +D ++W +++SG V +     A  LF +MR  G+ P   T +    
Sbjct: 577 NIMYSRKVFDGLSPKDIISWNSLLSGYVLHGCSESALDLFDQMRKDGLHPSRVTLT---- 632

Query: 341 AAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNM-----VS 395
                                           +IS Y+   ++D   + FSN+     + 
Sbjct: 633 -------------------------------SIISAYSHAEMVDEGKHAFSNISEEYQIR 661

Query: 396 RDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSAC 443
            DL  +++MV      G   + L+  ++M      PNS  +  +L+AC
Sbjct: 662 LDLEHYSAMVYLLGRSGKLAKALEFIQNM---PVEPNSSVWAALLTAC 706



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 62/261 (23%), Positives = 110/261 (42%), Gaps = 7/261 (2%)

Query: 302 AMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKT 361
             ++ L  N    EA  +   +   G      TF  L  A      I +GR++H  +   
Sbjct: 54  TQLNQLCANGSLSEAVAILDSLAQQGSKVRPITFMNLLQACIDKDCILVGRELHTRIGLV 113

Query: 362 ESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVF 421
              +  + E  L+SMYAKCG +D A  +F  M  R+L +W++M+   S      E +++F
Sbjct: 114 RKVNPFV-ETKLVSMYAKCGHLDEARKVFDEMRERNLFTWSAMIGACSRDLKWEEVVELF 172

Query: 422 ESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGR 481
             M++ G  P+      +L AC     +  G  L +++     +        S++ +  +
Sbjct: 173 YDMMQHGVLPDDFLLPKVLKACGKFRDIETG-RLIHSLVIRGGMCSSLHVNNSILAVYAK 231

Query: 482 AGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVV 541
            G++  AE+   R+  E +   W  ++   G+C+   EI E A K    +        +V
Sbjct: 232 CGEMSCAEKIFRRMD-ERNCVSWNVII--TGYCQ-RGEI-EQAQKYFDAMQEEGMEPGLV 286

Query: 542 LCNIYAASGRHVEEHKLRMDM 562
             NI  AS   +    + MD+
Sbjct: 287 TWNILIASYSQLGHCDIAMDL 307


>gi|225439588|ref|XP_002265522.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Vitis vinifera]
          Length = 686

 Score =  281 bits (719), Expect = 7e-73,   Method: Compositional matrix adjust.
 Identities = 165/514 (32%), Positives = 276/514 (53%), Gaps = 22/514 (4%)

Query: 92  ARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECC-- 149
            R LF ++ + N+  WN+M+ GL+ N   ++A + +  M  +  +  N      ++ C  
Sbjct: 65  TRFLFHQIKQPNIFLWNTMIRGLVSNDCFDDAIEFYGLMRSEGFLPNNFTFPFVLKACAR 124

Query: 150 ----MMGEAI--VLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAM 203
                +G  I  ++ +   + +V   TS++  Y + G +E+ + +F  +P KNVVSWTA+
Sbjct: 125 LLDLQLGVKIHTLVVKGGFDCDVFVKTSLVCLYAKCGYLEDAHKVFDDIPDKNVVSWTAI 184

Query: 204 IGGFAWNGFHKESLLLF---IEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDT 260
           I G+   G  +E++ +F   +EM    D+     V S  +      + G L   + +   
Sbjct: 185 ISGYIGVGKFREAIDMFRRLLEMNLAPDSFTIVRVLSACT------QLGDLNSGEWIHKC 238

Query: 261 VP----VRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEA 316
           +     VR+    TS++D Y   G +  A  +F  MP++D V+W AMI G   N L  EA
Sbjct: 239 IMEMGMVRNVFVGTSLVDMYAKCGNMEKARSVFDGMPEKDIVSWGAMIQGYALNGLPKEA 298

Query: 317 TYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISM 376
             LF++M+   V P   T   +  A      ++LG  +  ++ + E   + +L   LI +
Sbjct: 299 IDLFLQMQRENVKPDCYTVVGVLSACARLGALELGEWVSGLVDRNEFLYNPVLGTALIDL 358

Query: 377 YAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTF 436
           YAKCG +  A+ +F  M  +D V WN+++ G + +G    +  +F  + + G  P+  TF
Sbjct: 359 YAKCGSMSRAWEVFKGMKEKDRVVWNAIISGLAMNGYVKISFGLFGQVEKLGIKPDGNTF 418

Query: 437 LGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLP 496
           +G+L  C+HAGLV  G   FN+M+  + + P  EHY  M++LLGRAG + EA + +  +P
Sbjct: 419 IGLLCGCTHAGLVDEGRRYFNSMYRFFSLTPSIEHYGCMVDLLGRAGLLDEAHQLIRNMP 478

Query: 497 FEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEH 556
            E +  +WGALLGAC     + ++AE A K+L+EL+P N+  +V+L NIY+A+ +  E  
Sbjct: 479 MEANAIVWGALLGACRI-HRDTQLAELALKQLIELEPWNSGNYVLLSNIYSANLKWDEAA 537

Query: 557 KLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDK 590
           K+R+ M  K ++K PGCSW+  +G +  FL GDK
Sbjct: 538 KVRLSMNEKRIQKPPGCSWIEVDGIVHEFLVGDK 571



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 97/342 (28%), Positives = 150/342 (43%), Gaps = 54/342 (15%)

Query: 15  TSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERN-- 72
           TS +  Y+K G++++A  +F  +P +NVVS+ A++SG++  G+  EA  +F  + E N  
Sbjct: 151 TSLVCLYAKCGYLEDAHKVFDDIPDKNVVSWTAIISGYIGVGKFREAIDMFRRLLEMNLA 210

Query: 73  -----VVSWTAMICGLADAGRVCEARKLFEEMPE-RNVVSWNSMVVGLIRNGELNEARKV 126
                +V   +    L D        K   EM   RNV    S+V    + G + +AR V
Sbjct: 211 PDSFTIVRVLSACTQLGDLNSGEWIHKCIMEMGMVRNVFVGTSLVDMYAKCGNMEKARSV 270

Query: 127 FNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNV-------------------- 166
           F+ MP K+++SW AMI GY    +  EAI LF +M+  NV                    
Sbjct: 271 FDGMPEKDIVSWGAMIQGYALNGLPKEAIDLFLQMQRENVKPDCYTVVGVLSACARLGAL 330

Query: 167 -------------------VTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGF 207
                              V  T++I  Y + G +   + +F+ M  K+ V W A+I G 
Sbjct: 331 ELGEWVSGLVDRNEFLYNPVLGTALIDLYAKCGSMSRAWEVFKGMKEKDRVVWNAIISGL 390

Query: 208 AWNGFHKESLLLF--IEMKGICDNGNNCNVQSCNSMINGYIRFGR--LEEAQNLFDTVPV 263
           A NG+ K S  LF  +E  GI  +GN      C     G +  GR         F   P 
Sbjct: 391 AMNGYVKISFGLFGQVEKLGIKPDGNTFIGLLCGCTHAGLVDEGRRYFNSMYRFFSLTPS 450

Query: 264 RDEISWTSMIDGYLSVGQVSNAYYLFHNMP-DRDAVAWTAMI 304
            +   +  M+D     G +  A+ L  NMP + +A+ W A++
Sbjct: 451 IEH--YGCMVDLLGRAGLLDEAHQLIRNMPMEANAIVWGALL 490


>gi|356499342|ref|XP_003518500.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g29230-like [Glycine max]
          Length = 446

 Score =  281 bits (719), Expect = 8e-73,   Method: Compositional matrix adjust.
 Identities = 156/410 (38%), Positives = 232/410 (56%), Gaps = 9/410 (2%)

Query: 182 VEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSM 241
           V + Y +F  M  KNV +WTA++   A    H       +  + + D    C+V   N +
Sbjct: 10  VADAYKVFAEMRDKNVFAWTAVVA--AHVACHD-----MVSARRLFDLAPQCDVVLWNVI 62

Query: 242 INGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWT 301
           ++GYI  G +  A+ LFD +P  D +SW +++ GY + G+V     +F  MP R+  +W 
Sbjct: 63  VSGYIELGDMVAARELFDRMPDCDVMSWNTVLSGYANNGEVELFVKVFEEMPARNVYSWN 122

Query: 302 AMISGLVQNELFVEATYLFMEMRAHGVP-PLNATFSVLFGAAGATANIDLGRQIHCVLMK 360
            +I G V+N LF EA   F  M   GV  P + T   +  A     ++++G+ +H     
Sbjct: 123 GLIGGYVRNGLFKEALECFKRMLVDGVVVPNDYTVVAVLSACSRLGDLEIGKWVHVYADS 182

Query: 361 TESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKV 420
              + +L + N LI MYAKCGVI+ A ++F  +  +D+++WN+++   + H  A + L +
Sbjct: 183 IGYKGNLFVGNALIDMYAKCGVIEKALDVFDGLDVKDIITWNTIINSLAMHXHAADALSL 242

Query: 421 FESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLG 480
           FE M  +G  P+ VTF+GILSAC+H GLV  G+  F +M D Y I P  EHY  M++LLG
Sbjct: 243 FEGMKRAGERPDGVTFVGILSACTHMGLVRNGFLHFQSMVDDYLIVPQIEHYGCMVDLLG 302

Query: 481 RAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHV 540
           RAG I +A + V ++P EPD  IW ALLGAC   + N E+AE A +RL+EL+P N    V
Sbjct: 303 RAGLINQAVDIVRKMPMEPDVVIWAALLGACRXYK-NVEMAELALQRLIELEPNNPGNFV 361

Query: 541 VLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDK 590
           +L NIY   GR  +  +L++ M   G RKVPGCS +  N  +  F S D+
Sbjct: 362 MLSNIYKDLGRSQDVARLKVAMRDTGFRKVPGCSVIGCNDSVVEFYSLDE 411



 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 92/329 (27%), Positives = 167/329 (50%), Gaps = 20/329 (6%)

Query: 89  VCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVEC 148
           V +A K+F EM ++NV +W ++V   +   ++  AR++F+  P  +V+ WN +++GY+E 
Sbjct: 10  VADAYKVFAEMRDKNVFAWTAVVAAHVACHDMVSARRLFDLAPQCDVVLWNVIVSGYIEL 69

Query: 149 CMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFA 208
             M  A  LF+ M + +V++W +++SGY   GEVE    +F  MP +NV SW  +IGG+ 
Sbjct: 70  GDMVAARELFDRMPDCDVMSWNTVLSGYANNGEVELFVKVFEEMPARNVYSWNGLIGGYV 129

Query: 209 WNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLF---DTVPVRD 265
            NG  KE+L  F  M  + D     N  +  ++++   R G LE  + +    D++  + 
Sbjct: 130 RNGLFKEALECFKRM--LVDGVVVPNDYTVVAVLSACSRLGDLEIGKWVHVYADSIGYKG 187

Query: 266 EI-SWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMR 324
            +    ++ID Y   G +  A  +F  +  +D + W  +I+ L  +    +A  LF  M+
Sbjct: 188 NLFVGNALIDMYAKCGVIEKALDVFDGLDVKDIITWNTIINSLAMHXHAADALSLFEGMK 247

Query: 325 AHGVPPLNATFSVLFGAAGATANIDLGRQ--IHCVLMKTESESDLILEN-----CLISMY 377
             G  P   TF    G   A  ++ L R   +H    ++  +  LI+       C++ + 
Sbjct: 248 RAGERPDGVTF---VGILSACTHMGLVRNGFLH---FQSMVDDYLIVPQIEHYGCMVDLL 301

Query: 378 AKCGVIDNAYNIFSNM-VSRDLVSWNSMV 405
            + G+I+ A +I   M +  D+V W +++
Sbjct: 302 GRAGLINQAVDIVRKMPMEPDVVIWAALL 330



 Score =  132 bits (331), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 90/306 (29%), Positives = 151/306 (49%), Gaps = 50/306 (16%)

Query: 21  YSKRG--FIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTA 78
           YS RG  F+ +A  +F  M  +NV ++ A+++  +    +  ARRLF+  P+ +VV W  
Sbjct: 2   YSLRGGVFVADAYKVFAEMRDKNVFAWTAVVAAHVACHDMVSARRLFDLAPQCDVVLWNV 61

Query: 79  MICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISW 138
           ++ G  + G +  AR+LF+ MP+ +V+SWN+++ G   NGE+    KVF  MP +NV SW
Sbjct: 62  IVSGYIELGDMVAARELFDRMPDCDVMSWNTVLSGYANNGEVELFVKVFEEMPARNVYSW 121

Query: 139 NAMIAGYVECCMMGEAIVLFEEMEERNVV-----TWTSMISGYCRAGEVEEGYCLFRRMP 193
           N +I GYV   +  EA+  F+ M    VV     T  +++S   R G++E G        
Sbjct: 122 NGLIGGYVRNGLFKEALECFKRMLVDGVVVPNDYTVVAVLSACSRLGDLEIG-------- 173

Query: 194 RKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEE 253
                          W   + +S+            G   N+   N++I+ Y + G +E+
Sbjct: 174 --------------KWVHVYADSI------------GYKGNLFVGNALIDMYAKCGVIEK 207

Query: 254 AQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDR----DAVAWTAMIS---- 305
           A ++FD + V+D I+W ++I+        ++A  LF  M       D V +  ++S    
Sbjct: 208 ALDVFDGLDVKDIITWNTIINSLAMHXHAADALSLFEGMKRAGERPDGVTFVGILSACTH 267

Query: 306 -GLVQN 310
            GLV+N
Sbjct: 268 MGLVRN 273



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 73/281 (25%), Positives = 135/281 (48%), Gaps = 16/281 (5%)

Query: 7   PKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFE 66
           P+  VV     ++ Y + G +  A+ LF  MP  +V+S+N +LSG+  NG +    ++FE
Sbjct: 52  PQCDVVLWNVIVSGYIELGDMVAARELFDRMPDCDVMSWNTVLSGYANNGEVELFVKVFE 111

Query: 67  EMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLI-----RNGELN 121
           EMP RNV SW  +I G    G   EA + F+ M    VV  N   V  +     R G+L 
Sbjct: 112 EMPARNVYSWNGLIGGYVRNGLFKEALECFKRMLVDGVVVPNDYTVVAVLSACSRLGDLE 171

Query: 122 EARKVF---NSMPIK-NVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYC 177
             + V    +S+  K N+   NA+I  Y +C ++ +A+ +F+ ++ ++++TW ++I+   
Sbjct: 172 IGKWVHVYADSIGYKGNLFVGNALIDMYAKCGVIEKALDVFDGLDVKDIITWNTIINSLA 231

Query: 178 RAGEVEEGYCLFRRMPRK----NVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNC 233
                 +   LF  M R     + V++  ++      G  +   L F  M  + D     
Sbjct: 232 MHXHAADALSLFEGMKRAGERPDGVTFVGILSACTHMGLVRNGFLHFQSM--VDDYLIVP 289

Query: 234 NVQSCNSMINGYIRFGRLEEAQNLFDTVPVR-DEISWTSMI 273
            ++    M++   R G + +A ++   +P+  D + W +++
Sbjct: 290 QIEHYGCMVDLLGRAGLINQAVDIVRKMPMEPDVVIWAALL 330



 Score = 44.7 bits (104), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 35/148 (23%), Positives = 76/148 (51%), Gaps = 11/148 (7%)

Query: 41  NVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMP 100
           N+   NA++  + + G + +A  +F+ +  +++++W  +I  LA      +A  LFE M 
Sbjct: 188 NLFVGNALIDMYAKCGVIEKALDVFDGLDVKDIITWNTIINSLAMHXHAADALSLFEGMK 247

Query: 101 ---ER-NVVSWNSMV-----VGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMM 151
              ER + V++  ++     +GL+RNG L+    V + + +  +  +  M+       ++
Sbjct: 248 RAGERPDGVTFVGILSACTHMGLVRNGFLHFQSMVDDYLIVPQIEHYGCMVDLLGRAGLI 307

Query: 152 GEAIVLFEEME-ERNVVTWTSMISGYCR 178
            +A+ +  +M  E +VV W +++ G CR
Sbjct: 308 NQAVDIVRKMPMEPDVVIWAALL-GACR 334


>gi|413916018|gb|AFW55950.1| hypothetical protein ZEAMMB73_919937 [Zea mays]
          Length = 864

 Score =  281 bits (719), Expect = 8e-73,   Method: Compositional matrix adjust.
 Identities = 185/639 (28%), Positives = 311/639 (48%), Gaps = 69/639 (10%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPE------- 70
           +  Y K   +D+A   F  M +RN VS+ A ++G +QN + +    LF +M         
Sbjct: 193 VDMYGKCRSLDDALRFFHGMGERNSVSWGAAIAGCVQNEQYTRGMELFVQMQRLGLGVSQ 252

Query: 71  ---------------------------RNVVS-----WTAMICGLADAGRVCEARKLFEE 98
                                      +NV S      TA++   A AG + +AR+ F  
Sbjct: 253 PAYASAFRSCAAMPCLSTARQLHAHAIKNVFSSDRVVGTAIVDVYAKAGNLVDARRAFIG 312

Query: 99  MPERNVVSWNSMVVGLIRNGELNEARKVFNSMP----------IKNVISWNAMIAGY--- 145
           +P  NV + N+M+VGL+R G   EA ++F  M           +  V S  A + GY   
Sbjct: 313 LPHHNVETCNAMMVGLVRTGLGAEAMQLFQFMTRSGVGFDVISLSGVFSACAEVKGYFQG 372

Query: 146 --VECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAM 203
             V C  +           + +V    +++  Y +   + E Y +F+ M +++ VSW A+
Sbjct: 373 LQVHCLAVKSGF-------DVDVCVRNAILDLYGKCKALVEAYLVFQEMEQRDSVSWNAI 425

Query: 204 IGGFAWNGFHKESLLLFIEM--KGI--CDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFD 259
           I     N  +++++    EM   G+   D      +++C  + +  + +G +   + +  
Sbjct: 426 IAALEQNECYEDTIAHLNEMLRSGMEPDDFTYGSVLKACAGLQS--LEYGLVVHGKAIKS 483

Query: 260 TVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYL 319
            + + D    ++++D Y   G ++ A  L   +  ++ V+W ++ISG    +   EA   
Sbjct: 484 GLGL-DAFVSSTVVDMYCKCGAITEAQKLHDRIGGQELVSWNSIISGFSLTKQSEEAQRF 542

Query: 320 FMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAK 379
           F EM   GV P + T++ +       A I+LG+QIH  ++K E   D  + + L+ MYAK
Sbjct: 543 FSEMLDMGVKPDHFTYATVLDTCANLATIELGKQIHGQIIKQEMLGDEYISSTLVDMYAK 602

Query: 380 CGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGI 439
           CG + ++  +F      D VSWN+M+ G++ HG   E L++FE M  +   PN  TF+ +
Sbjct: 603 CGNMPDSLLMFEKARKLDFVSWNAMICGYALHGQGLEALEMFERMQRANVVPNHATFVAV 662

Query: 440 LSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEP 499
           L ACSH GL+  G + F+ M   YK+ P  EH+  M+++LGR+   +EA EF+  +P E 
Sbjct: 663 LRACSHVGLLDDGCQYFHLMTSRYKLVPQLEHFACMVDILGRSKGPQEALEFIRSMPIEA 722

Query: 500 DHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLR 559
           D  +W  LL  C   + + E+AE AA  +L LDP +A  +++L N+YA SG+ V+  + R
Sbjct: 723 DAVVWKTLLSICKIRQ-DVEVAETAASNVLRLDPDDASVYILLSNVYAGSGKWVDVSRTR 781

Query: 560 MDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
             M    +RK PGCSW+     +  FL GDK+  +  E+
Sbjct: 782 RLMRQGRLRKEPGCSWIEVQSEMHGFLVGDKVHPRSKEV 820



 Score =  172 bits (436), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 144/585 (24%), Positives = 253/585 (43%), Gaps = 109/585 (18%)

Query: 21  YSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMI 80
           Y++ G    A  +F  MP R+ VS+N ML+ ++  G    A  LF  MP+ +VVSW  +I
Sbjct: 64  YARCGGTAHAHGVFDTMPHRDTVSWNTMLTAYVHAGDTDTAASLFGTMPDPDVVSWNTLI 123

Query: 81  CGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRN-GELNE-ARKV-FNSMPIK---- 133
            G    G    +  L  EM  R V    + +  L+++ G L++ A  V  +++ +K    
Sbjct: 124 SGYCQHGMFRNSVGLSMEMSRRGVALDRTTLAVLLKSCGGLDDLALGVQIHALAVKTGLE 183

Query: 134 -NVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRM 192
            +V + +A++  Y +C  + +A+  F  M ERN V+W + I+G  +  +   G  LF +M
Sbjct: 184 TDVRAGSALVDMYGKCRSLDDALRFFHGMGERNSVSWGAAIAGCVQNEQYTRGMELFVQM 243

Query: 193 PR----------------------------------KNVVS-----WTAMIGGFAWNGFH 213
            R                                  KNV S      TA++  +A  G  
Sbjct: 244 QRLGLGVSQPAYASAFRSCAAMPCLSTARQLHAHAIKNVFSSDRVVGTAIVDVYAKAGNL 303

Query: 214 KESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNL----------FDTVPV 263
            ++   FI +        + NV++CN+M+ G +R G   EA  L          FD + +
Sbjct: 304 VDARRAFIGLP-------HHNVETCNAMMVGLVRTGLGAEAMQLFQFMTRSGVGFDVISL 356

Query: 264 RDEISWTSMIDGYLSVGQVS-----------------------------NAYYLFHNMPD 294
               S  + + GY    QV                               AY +F  M  
Sbjct: 357 SGVFSACAEVKGYFQGLQVHCLAVKSGFDVDVCVRNAILDLYGKCKALVEAYLVFQEMEQ 416

Query: 295 RDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQI 354
           RD+V+W A+I+ L QNE + +      EM   G+ P + T+  +  A     +++ G  +
Sbjct: 417 RDSVSWNAIIAALEQNECYEDTIAHLNEMLRSGMEPDDFTYGSVLKACAGLQSLEYGLVV 476

Query: 355 HCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLA 414
           H   +K+    D  + + ++ MY KCG I  A  +   +  ++LVSWNS++ GFS    +
Sbjct: 477 HGKAIKSGLGLDAFVSSTVVDMYCKCGAITEAQKLHDRIGGQELVSWNSIISGFSLTKQS 536

Query: 415 NETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVS 474
            E  + F  ML+ G  P+  T+  +L  C++   +  G ++      + K +   + Y+S
Sbjct: 537 EEAQRFFSEMLDMGVKPDHFTYATVLDTCANLATIELGKQIHG---QIIKQEMLGDEYIS 593

Query: 475 --MINLLGRAGKIKEAEEFVLRLPFEPDHRI----WGALLGACGF 513
             ++++  + G + ++      L FE   ++    W A++  CG+
Sbjct: 594 STLVDMYAKCGNMPDS-----LLMFEKARKLDFVSWNAMI--CGY 631



 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 122/465 (26%), Positives = 212/465 (45%), Gaps = 22/465 (4%)

Query: 46  NAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVV 105
           N +L  + + G  + A  +F+ MP R+ VSW  M+     AG    A  LF  MP+ +VV
Sbjct: 58  NCLLQMYARCGGTAHAHGVFDTMPHRDTVSWNTMLTAYVHAGDTDTAASLFGTMPDPDVV 117

Query: 106 SWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEME--- 162
           SWN+++ G  ++G    +  +   M  + V      +A  ++ C   + + L  ++    
Sbjct: 118 SWNTLISGYCQHGMFRNSVGLSMEMSRRGVALDRTTLAVLLKSCGGLDDLALGVQIHALA 177

Query: 163 -----ERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESL 217
                E +V   ++++  Y +   +++    F  M  +N VSW A I G   N  +   +
Sbjct: 178 VKTGLETDVRAGSALVDMYGKCRSLDDALRFFHGMGERNSVSWGAAIAGCVQNEQYTRGM 237

Query: 218 LLFIEMK----GICDNGNNCNVQSCNSM-INGYIRFGRLEEAQNLFDTVPVRDEISWTSM 272
            LF++M+    G+         +SC +M      R       +N+F +    D +  T++
Sbjct: 238 ELFVQMQRLGLGVSQPAYASAFRSCAAMPCLSTARQLHAHAIKNVFSS----DRVVGTAI 293

Query: 273 IDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLN 332
           +D Y   G + +A   F  +P  +     AM+ GLV+  L  EA  LF  M   GV    
Sbjct: 294 VDVYAKAGNLVDARRAFIGLPHHNVETCNAMMVGLVRTGLGAEAMQLFQFMTRSGVGFDV 353

Query: 333 ATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSN 392
            + S +F A         G Q+HC+ +K+  + D+ + N ++ +Y KC  +  AY +F  
Sbjct: 354 ISLSGVFSACAEVKGYFQGLQVHCLAVKSGFDVDVCVRNAILDLYGKCKALVEAYLVFQE 413

Query: 393 MVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRG 452
           M  RD VSWN+++     +    +T+     ML SG  P+  T+  +L AC  AGL S  
Sbjct: 414 MEQRDSVSWNAIIAALEQNECYEDTIAHLNEMLRSGMEPDDFTYGSVLKAC--AGLQSLE 471

Query: 453 WELFNAMFDVYKIQPGPEHYVS--MINLLGRAGKIKEAEEFVLRL 495
           + L        K   G + +VS  ++++  + G I EA++   R+
Sbjct: 472 YGLV-VHGKAIKSGLGLDAFVSSTVVDMYCKCGAITEAQKLHDRI 515



 Score =  148 bits (374), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 122/489 (24%), Positives = 220/489 (44%), Gaps = 47/489 (9%)

Query: 115 IRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMIS 174
           +  G+   AR + +       +S N ++  Y  C     A  +F+ M  R+ V+W +M++
Sbjct: 35  LTTGQAAHARMLVSGFMPTTFVS-NCLLQMYARCGGTAHAHGVFDTMPHRDTVSWNTMLT 93

Query: 175 GYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEM--KGICDNGNN 232
            Y  AG+ +    LF  MP  +VVSW  +I G+  +G  + S+ L +EM  +G+  +   
Sbjct: 94  AYVHAGDTDTAASLFGTMPDPDVVSWNTLISGYCQHGMFRNSVGLSMEMSRRGVALDRTT 153

Query: 233 CNV--QSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFH 290
             V  +SC  + +  +  G    A  +  T    D  + ++++D Y     + +A   FH
Sbjct: 154 LAVLLKSCGGLDD--LALGVQIHALAV-KTGLETDVRAGSALVDMYGKCRSLDDALRFFH 210

Query: 291 NMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDL 350
            M +R++V+W A I+G VQNE +     LF++M+  G+      ++  F +  A   +  
Sbjct: 211 GMGERNSVSWGAAIAGCVQNEQYTRGMELFVQMQRLGLGVSQPAYASAFRSCAAMPCLST 270

Query: 351 GRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSH 410
            RQ+H   +K    SD ++   ++ +YAK G + +A   F  +   ++ + N+M++G   
Sbjct: 271 ARQLHAHAIKNVFSSDRVVGTAIVDVYAKAGNLVDARRAFIGLPHHNVETCNAMMVGLVR 330

Query: 411 HGLANETLKVFESMLESGTHPNSVTFLGILSACS-----------HAGLVSRGWE----L 455
            GL  E +++F+ M  SG   + ++  G+ SAC+           H   V  G++    +
Sbjct: 331 TGLGAEAMQLFQFMTRSGVGFDVISLSGVFSACAEVKGYFQGLQVHCLAVKSGFDVDVCV 390

Query: 456 FNAMFDVY-KIQPGPEHYVSMINLLGR--------AGKIKEAEEF---------VLRLPF 497
            NA+ D+Y K +   E Y+    +  R           +++ E +         +LR   
Sbjct: 391 RNAILDLYGKCKALVEAYLVFQEMEQRDSVSWNAIIAALEQNECYEDTIAHLNEMLRSGM 450

Query: 498 EPDHRIWGALLGACG---FCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVE 554
           EPD   +G++L AC      E    +   A K  L LD   +   V   ++Y   G   E
Sbjct: 451 EPDDFTYGSVLKACAGLQSLEYGLVVHGKAIKSGLGLDAFVSSTVV---DMYCKCGAITE 507

Query: 555 EHKLRMDMG 563
             KL   +G
Sbjct: 508 AQKLHDRIG 516



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 35/117 (29%), Positives = 61/117 (52%), Gaps = 7/117 (5%)

Query: 332 NATFSVLFG--AAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNI 389
            ATFS L+   A+   + +  G+  H  ++ +       + NCL+ MYA+CG   +A+ +
Sbjct: 17  TATFSHLYQLCASAGRSALTTGQAAHARMLVSGFMPTTFVSNCLLQMYARCGGTAHAHGV 76

Query: 390 FSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSA-CSH 445
           F  M  RD VSWN+M+  + H G  +    +F +M +    P+ V++  ++S  C H
Sbjct: 77  FDTMPHRDTVSWNTMLTAYVHAGDTDTAASLFGTMPD----PDVVSWNTLISGYCQH 129


>gi|225456517|ref|XP_002281018.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 624

 Score =  281 bits (719), Expect = 8e-73,   Method: Compositional matrix adjust.
 Identities = 181/570 (31%), Positives = 288/570 (50%), Gaps = 29/570 (5%)

Query: 44  SYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERN 103
           S+N +LS  + +G   +            VVS   +   L+       +R LF ++ + N
Sbjct: 43  SFNQILSHAIASGVFRDP-----------VVSSKLLYYSLSHDHDFAFSRTLFFQIHKPN 91

Query: 104 VVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEE 163
           V SWN M     R+    E   ++N M     +  N      ++ C     +    E+  
Sbjct: 92  VFSWNFMFRAYSRSSFPAETIALYNLMLRNGTLPDNYSFPFVLKACARLSLLHKGREIHS 151

Query: 164 R--------NVVTWTSMISGYCRAGEVEEGYCLFRRMPR--KNVVSWTAMIGGFAWNGFH 213
                    +V    ++IS +   G VE    +F  +P   ++VVSW +MI G+  +  +
Sbjct: 152 STLKLGVHLDVFVQNALISAFSSCGAVEAARAVFDMLPALVRDVVSWNSMISGYLQSHRY 211

Query: 214 KESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVP----VRDEISW 269
           + +L +F E+ G  D   + +  +  S ++   R G L+  + +         V D    
Sbjct: 212 ELALKVFWELLG--DGSLSPDEVTLVSALSVCGRLGLLDLGKKIHGLFTGSGFVLDVFVG 269

Query: 270 TSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVP 329
           +S+ID Y   GQ+ +A  +F  +P R+ V WT+MI+G  Q++LF EA  LF EM+  G  
Sbjct: 270 SSLIDMYSKCGQIEDARKVFDRIPHRNTVCWTSMIAGYAQSDLFKEAIELFREMQIGGFA 329

Query: 330 PLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNI 389
              AT + +  A G    +  GR IH    +   E DL   N LI MY+KCG I  A  I
Sbjct: 330 ADAATIACVLSACGHWGALAQGRWIHLYCERNSIEMDLNARNALIGMYSKCGDIQKALEI 389

Query: 390 FSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESM-LESGTHPNSVTFLGILSACSHAGL 448
           F  +   D+ SW++++ G + +G +++ L +F  M + S   PN +TFLG+L AC+H G 
Sbjct: 390 FHGLTQPDIFSWSAVISGLAMNGESDKALHLFSQMEMISDIRPNEITFLGVLCACNHGGF 449

Query: 449 VSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALL 508
           V +G   FNAM  +Y + PG EHY  M++LLGRA  + EAE+F+  LP +PD  IW +LL
Sbjct: 450 VDKGLYYFNAMTQIYNLTPGIEHYGCMVDLLGRANLLVEAEKFIRTLPIQPDVVIWRSLL 509

Query: 509 GACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVR 568
            AC    GN E+AE AAK++ EL+P    A V+L N+YA++ R  +  ++R DM  + ++
Sbjct: 510 FACR-NHGNIELAEFAAKQIEELEPRRCGARVLLSNVYASASRWGDVKRVRKDMATQRIK 568

Query: 569 KVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
           K PGCS++  +G +      D+   ++  I
Sbjct: 569 KQPGCSFVEIDGLVHELFVADRSHPEMGAI 598



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 69/261 (26%), Positives = 124/261 (47%), Gaps = 50/261 (19%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQ--RNVVSYNAMLSGFLQNGRLSEARRLFEEM------- 68
           I+ +S  G ++ A+A+F ++P   R+VVS+N+M+SG+LQ+ R   A ++F E+       
Sbjct: 169 ISAFSSCGAVEAARAVFDMLPALVRDVVSWNSMISGYLQSHRYELALKVFWELLGDGSLS 228

Query: 69  PERNVVSWTAMICG---------------------------------LADAGRVCEARKL 95
           P+   +     +CG                                  +  G++ +ARK+
Sbjct: 229 PDEVTLVSALSVCGRLGLLDLGKKIHGLFTGSGFVLDVFVGSSLIDMYSKCGQIEDARKV 288

Query: 96  FEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECC------ 149
           F+ +P RN V W SM+ G  ++    EA ++F  M I    +  A IA  +  C      
Sbjct: 289 FDRIPHRNTVCWTSMIAGYAQSDLFKEAIELFREMQIGGFAADAATIACVLSACGHWGAL 348

Query: 150 MMGEAIVLFEEME--ERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGF 207
             G  I L+ E    E ++    ++I  Y + G++++   +F  + + ++ SW+A+I G 
Sbjct: 349 AQGRWIHLYCERNSIEMDLNARNALIGMYSKCGDIQKALEIFHGLTQPDIFSWSAVISGL 408

Query: 208 AWNGFHKESLLLFIEMKGICD 228
           A NG   ++L LF +M+ I D
Sbjct: 409 AMNGESDKALHLFSQMEMISD 429



 Score = 85.5 bits (210), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 68/281 (24%), Positives = 136/281 (48%), Gaps = 22/281 (7%)

Query: 12  VHLTSSITKYSKRGFIDEAKALFQLMPQR----NVVSYNAMLSGFLQNGRLSEARRLFEE 67
           V L S+++   + G +D  K +  L        +V   ++++  + + G++ +AR++F+ 
Sbjct: 232 VTLVSALSVCGRLGLLDLGKKIHGLFTGSGFVLDVFVGSSLIDMYSKCGQIEDARKVFDR 291

Query: 68  MPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRN----GELNEA 123
           +P RN V WT+MI G A +    EA +LF EM      +  + +  ++      G L + 
Sbjct: 292 IPHRNTVCWTSMIAGYAQSDLFKEAIELFREMQIGGFAADAATIACVLSACGHWGALAQG 351

Query: 124 RKVF-----NSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCR 178
           R +      NS+ + ++ + NA+I  Y +C  + +A+ +F  + + ++ +W+++ISG   
Sbjct: 352 RWIHLYCERNSIEM-DLNARNALIGMYSKCGDIQKALEIFHGLTQPDIFSWSAVISGLAM 410

Query: 179 AGEVEEGYCLFRRMP-----RKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNC 233
            GE ++   LF +M      R N +++  ++      GF  + L  F  M  I +     
Sbjct: 411 NGESDKALHLFSQMEMISDIRPNEITFLGVLCACNHGGFVDKGLYYFNAMTQIYNLTPGI 470

Query: 234 NVQSCNSMINGYIRFGRLEEAQNLFDTVPVR-DEISWTSMI 273
               C  M++   R   L EA+    T+P++ D + W S++
Sbjct: 471 EHYGC--MVDLLGRANLLVEAEKFIRTLPIQPDVVIWRSLL 509


>gi|449508565|ref|XP_004163348.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g23330-like [Cucumis
           sativus]
          Length = 712

 Score =  281 bits (719), Expect = 8e-73,   Method: Compositional matrix adjust.
 Identities = 153/437 (35%), Positives = 242/437 (55%), Gaps = 12/437 (2%)

Query: 157 LFEEMEER--NVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHK 214
           +F+EM ER  +V T + +     R         +F  MP K++VSW  +I G A NG ++
Sbjct: 170 VFDEMTERTRSVRTVSVLSEDSVRK--------IFEMMPEKDLVSWNTIIAGNARNGLYE 221

Query: 215 ESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEIS-WTSMI 273
           E+L +  EM G     ++  + S   +I   +   R +E         +  +I   +S+I
Sbjct: 222 ETLRMIREMGGANLKPDSFTLSSVLPLIAENVDISRGKEIHGCSIRQGLDADIYVASSLI 281

Query: 274 DGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNA 333
           D Y    +V+++  +F  + +RD ++W ++I+G VQN LF E    F +M    + P + 
Sbjct: 282 DMYAKCTRVADSCRVFTLLTERDGISWNSIIAGCVQNGLFDEGLRFFRQMLMAKIKPKSY 341

Query: 334 TFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNM 393
           +FS +  A      + LG+Q+H  + +   + ++ + + L+ MYAKCG I  A  IF  M
Sbjct: 342 SFSSIMPACAHLTTLHLGKQLHGYITRNGFDENIFIASSLVDMYAKCGNIRTAKQIFDRM 401

Query: 394 VSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGW 453
             RD+VSW +M+MG + HG A + +++FE M   G  PN V F+ +L+ACSH GLV   W
Sbjct: 402 RLRDMVSWTAMIMGCALHGQAPDAIELFEQMETEGIKPNHVAFMAVLTACSHGGLVDEAW 461

Query: 454 ELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGF 513
           + FN+M   + I PG EHY ++ +LLGRAG+++EA +F+  +   P   IW  LL AC  
Sbjct: 462 KYFNSMTRDFGIAPGVEHYAAVSDLLGRAGRLEEAYDFICGMHIGPTGSIWATLLSACRV 521

Query: 514 CEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGC 573
              N ++AE  A R+LE+DP N  A+++L NIY+A+ R  E  K R  M   G+RK P C
Sbjct: 522 -HXNIDMAEKVANRILEVDPNNTGAYILLANIYSAARRWKEAAKWRASMRRIGIRKTPAC 580

Query: 574 SWLMRNGGIQMFLSGDK 590
           SW+     +  F++GD+
Sbjct: 581 SWIEVKNKVYAFMAGDE 597



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 92/380 (24%), Positives = 173/380 (45%), Gaps = 22/380 (5%)

Query: 145 YVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRM------PRKNVV 198
           Y    ++ +++ LF  +     + W S+I  Y   G   +    F  M      P  NV 
Sbjct: 50  YSHINLLHDSLRLFNTIHFPPALAWKSVIRCYTSHGLPHQSLGSFIGMLASGLYPDHNVF 109

Query: 199 SWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEA-QNL 257
                      +    ESL  +I   G+     + ++ + N+++N Y +   LEE+ +  
Sbjct: 110 PSVLKSCALLMDLNLGESLHGYIIRVGL-----DFDLYTGNALMNMYSKLRFLEESGRQR 164

Query: 258 FDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEAT 317
                V DE++  +     +SV    +   +F  MP++D V+W  +I+G  +N L+ E  
Sbjct: 165 LGAGEVFDEMTERTRSVRTVSVLSEDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYEETL 224

Query: 318 YLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMY 377
            +  EM    + P + T S +        +I  G++IH   ++   ++D+ + + LI MY
Sbjct: 225 RMIREMGGANLKPDSFTLSSVLPLIAENVDISRGKEIHGCSIRQGLDADIYVASSLIDMY 284

Query: 378 AKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFL 437
           AKC  + ++  +F+ +  RD +SWNS++ G   +GL +E L+ F  ML +   P S +F 
Sbjct: 285 AKCTRVADSCRVFTLLTERDGISWNSIIAGCVQNGLFDEGLRFFRQMLMAKIKPKSYSFS 344

Query: 438 GILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYV----SMINLLGRAGKIKEAEEFVL 493
            I+ AC+H   +  G +L       Y  + G +  +    S++++  + G I+ A++   
Sbjct: 345 SIMPACAHLTTLHLGKQLHG-----YITRNGFDENIFIASSLVDMYAKCGNIRTAKQIFD 399

Query: 494 RLPFEPDHRIWGALLGACGF 513
           R+    D   W A++  C  
Sbjct: 400 RMRLR-DMVSWTAMIMGCAL 418



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 95/371 (25%), Positives = 162/371 (43%), Gaps = 55/371 (14%)

Query: 22  SKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLS-EARRLFEEMPERNVVSWTAMI 80
           S  G+I      F L     +++  + L    ++GR    A  +F+EM ER     T  +
Sbjct: 127 SLHGYIIRVGLDFDLYTGNALMNMYSKLRFLEESGRQRLGAGEVFDEMTERTRSVRTVSV 186

Query: 81  CGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSM---------- 130
             L++       RK+FE MPE+++VSWN+++ G  RNG   E  ++   M          
Sbjct: 187 --LSEDS----VRKIFEMMPEKDLVSWNTIIAGNARNGLYEETLRMIREMGGANLKPDSF 240

Query: 131 ------PI-----------------------KNVISWNAMIAGYVECCMMGEAIVLFEEM 161
                 P+                        ++   +++I  Y +C  + ++  +F  +
Sbjct: 241 TLSSVLPLIAENVDISRGKEIHGCSIRQGLDADIYVASSLIDMYAKCTRVADSCRVFTLL 300

Query: 162 EERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFI 221
            ER+ ++W S+I+G  + G  +EG   FR+M    +   +           H  +L L  
Sbjct: 301 TERDGISWNSIIAGCVQNGLFDEGLRFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLGK 360

Query: 222 EMKG-ICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVG 280
           ++ G I  NG + N+   +S+++ Y + G +  A+ +FD + +RD +SWT+MI G    G
Sbjct: 361 QLHGYITRNGFDENIFIASSLVDMYAKCGNIRTAKQIFDRMRLRDMVSWTAMIMGCALHG 420

Query: 281 QVSNAYYLFHNMPDR----DAVAWTAMISGLVQNELFVEATYLFMEM-RAHGVPP---LN 332
           Q  +A  LF  M       + VA+ A+++      L  EA   F  M R  G+ P     
Sbjct: 421 QAPDAIELFEQMETEGIKPNHVAFMAVLTACSHGGLVDEAWKYFNSMTRDFGIAPGVEHY 480

Query: 333 ATFSVLFGAAG 343
           A  S L G AG
Sbjct: 481 AAVSDLLGRAG 491



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 37/124 (29%), Positives = 65/124 (52%), Gaps = 15/124 (12%)

Query: 11  VVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPE 70
            +HL   +  Y  R   DE           N+   ++++  + + G +  A+++F+ M  
Sbjct: 355 TLHLGKQLHGYITRNGFDE-----------NIFIASSLVDMYAKCGNIRTAKQIFDRMRL 403

Query: 71  RNVVSWTAMICGLADAGRVCEARKLFEEMP----ERNVVSWNSMVVGLIRNGELNEARKV 126
           R++VSWTAMI G A  G+  +A +LFE+M     + N V++ +++      G ++EA K 
Sbjct: 404 RDMVSWTAMIMGCALHGQAPDAIELFEQMETEGIKPNHVAFMAVLTACSHGGLVDEAWKY 463

Query: 127 FNSM 130
           FNSM
Sbjct: 464 FNSM 467



 Score = 43.1 bits (100), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 17/69 (24%), Positives = 40/69 (57%)

Query: 376 MYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVT 435
           +Y+   ++ ++  +F+ +     ++W S++  ++ HGL +++L  F  ML SG +P+   
Sbjct: 49  IYSHINLLHDSLRLFNTIHFPPALAWKSVIRCYTSHGLPHQSLGSFIGMLASGLYPDHNV 108

Query: 436 FLGILSACS 444
           F  +L +C+
Sbjct: 109 FPSVLKSCA 117


>gi|15228590|ref|NP_187008.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207453|sp|Q9SS60.1|PP210_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g03580
 gi|6091764|gb|AAF03474.1|AC009327_13 hypothetical protein [Arabidopsis thaliana]
 gi|28393735|gb|AAO42278.1| unknown protein [Arabidopsis thaliana]
 gi|29824355|gb|AAP04138.1| unknown protein [Arabidopsis thaliana]
 gi|332640438|gb|AEE73959.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 882

 Score =  281 bits (718), Expect = 8e-73,   Method: Compositional matrix adjust.
 Identities = 183/632 (28%), Positives = 311/632 (49%), Gaps = 81/632 (12%)

Query: 46  NAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEM------ 99
           NA++  + + G L+ AR++F+EMP R++VSW ++I G +  G   EA +++ E+      
Sbjct: 145 NALVDMYSRMGLLTRARQVFDEMPVRDLVSWNSLISGYSSHGYYEEALEIYHELKNSWIV 204

Query: 100 PERNVVS------WNSMVV----GL-----------------------IRNGELNEARKV 126
           P+   VS       N +VV    GL                       ++     +AR+V
Sbjct: 205 PDSFTVSSVLPAFGNLLVVKQGQGLHGFALKSGVNSVVVVNNGLVAMYLKFRRPTDARRV 264

Query: 127 FNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEER---NVVTWTS------------ 171
           F+ M +++ +S+N MI GY++  M+ E++ +F E  ++   +++T +S            
Sbjct: 265 FDEMDVRDSVSYNTMICGYLKLEMVEESVRMFLENLDQFKPDLLTVSSVLRACGHLRDLS 324

Query: 172 -----------------------MISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFA 208
                                  +I  Y + G++     +F  M  K+ VSW ++I G+ 
Sbjct: 325 LAKYIYNYMLKAGFVLESTVRNILIDVYAKCGDMITARDVFNSMECKDTVSWNSIISGYI 384

Query: 209 WNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMIN--GYIRFGRLEEAQNLFDTVPVRDE 266
            +G   E++ LF  M  + +  ++       S+      ++FG+   +  +   + +   
Sbjct: 385 QSGDLMEAMKLFKMMMIMEEQADHITYLMLISVSTRLADLKFGKGLHSNGIKSGICIDLS 444

Query: 267 ISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAH 326
           +S  ++ID Y   G+V ++  +F +M   D V W  +IS  V+   F     +  +MR  
Sbjct: 445 VS-NALIDMYAKCGEVGDSLKIFSSMGTGDTVTWNTVISACVRFGDFATGLQVTTQMRKS 503

Query: 327 GVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNA 386
            V P  ATF V      + A   LG++IHC L++   ES+L + N LI MY+KCG ++N+
Sbjct: 504 EVVPDMATFLVTLPMCASLAAKRLGKEIHCCLLRFGYESELQIGNALIEMYSKCGCLENS 563

Query: 387 YNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHA 446
             +F  M  RD+V+W  M+  +  +G   + L+ F  M +SG  P+SV F+ I+ ACSH+
Sbjct: 564 SRVFERMSRRDVVTWTGMIYAYGMYGEGEKALETFADMEKSGIVPDSVVFIAIIYACSHS 623

Query: 447 GLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGA 506
           GLV  G   F  M   YKI P  EHY  +++LL R+ KI +AEEF+  +P +PD  IW +
Sbjct: 624 GLVDEGLACFEKMKTHYKIDPMIEHYACVVDLLSRSQKISKAEEFIQAMPIKPDASIWAS 683

Query: 507 LLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKG 566
           +L AC    G+ E AE  ++R++EL+P +    ++  N YAA  +  +   +R  +  K 
Sbjct: 684 VLRACR-TSGDMETAERVSRRIIELNPDDPGYSILASNAYAALRKWDKVSLIRKSLKDKH 742

Query: 567 VRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
           + K PG SW+     + +F SGD    Q   I
Sbjct: 743 ITKNPGYSWIEVGKNVHVFSSGDDSAPQSEAI 774



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 130/516 (25%), Positives = 240/516 (46%), Gaps = 77/516 (14%)

Query: 18  ITKYSKRGFIDEAKALF---QLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNV- 73
           I KYS   F + A +L    ++ P +NV  +N+++  F +NG   EA   + ++ E  V 
Sbjct: 46  IDKYSH--FREPASSLSVFRRVSPAKNVYLWNSIIRAFSKNGLFPEALEFYGKLRESKVS 103

Query: 74  ---VSWTAMI---CGLADA--GRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARK 125
               ++ ++I    GL DA  G +    ++ +   E ++   N++V    R G L  AR+
Sbjct: 104 PDKYTFPSVIKACAGLFDAEMGDLV-YEQILDMGFESDLFVGNALVDMYSRMGLLTRARQ 162

Query: 126 VFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVV----TWTSMISGYCRAGE 181
           VF+ MP+++++SWN++I+GY       EA+ ++ E++   +V    T +S++  +     
Sbjct: 163 VFDEMPVRDLVSWNSLISGYSSHGYYEEALEIYHELKNSWIVPDSFTVSSVLPAFGNLLV 222

Query: 182 VEEG-------------------------YCLFRR----------MPRKNVVSWTAMIGG 206
           V++G                         Y  FRR          M  ++ VS+  MI G
Sbjct: 223 VKQGQGLHGFALKSGVNSVVVVNNGLVAMYLKFRRPTDARRVFDEMDVRDSVSYNTMICG 282

Query: 207 FAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVP---- 262
           +      +ES+ +F+E      +    ++ + +S++        L  A+ +++ +     
Sbjct: 283 YLKLEMVEESVRMFLENL----DQFKPDLLTVSSVLRACGHLRDLSLAKYIYNYMLKAGF 338

Query: 263 VRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFME 322
           V +      +ID Y   G +  A  +F++M  +D V+W ++ISG +Q+   +EA  LF  
Sbjct: 339 VLESTVRNILIDVYAKCGDMITARDVFNSMECKDTVSWNSIISGYIQSGDLMEAMKLFKM 398

Query: 323 MRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGV 382
           M        + T+ +L   +   A++  G+ +H   +K+    DL + N LI MYAKCG 
Sbjct: 399 MMIMEEQADHITYLMLISVSTRLADLKFGKGLHSNGIKSGICIDLSVSNALIDMYAKCGE 458

Query: 383 IDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSA 442
           + ++  IFS+M + D V+WN+++      G     L+V   M +S   P+  TFL  L  
Sbjct: 459 VGDSLKIFSSMGTGDTVTWNTVISACVRFGDFATGLQVTTQMRKSEVVPDMATFLVTLPM 518

Query: 443 CS-----------HAGLVSRGWE----LFNAMFDVY 463
           C+           H  L+  G+E    + NA+ ++Y
Sbjct: 519 CASLAAKRLGKEIHCCLLRFGYESELQIGNALIEMY 554



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 76/294 (25%), Positives = 142/294 (48%), Gaps = 9/294 (3%)

Query: 172 MISGYCRAGEVEEGYCLFRRM-PRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNG 230
           +I  Y    E      +FRR+ P KNV  W ++I  F+ NG   E+L  + +++    + 
Sbjct: 45  LIDKYSHFREPASSLSVFRRVSPAKNVYLWNSIIRAFSKNGLFPEALEFYGKLRESKVSP 104

Query: 231 NNCN----VQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAY 286
           +       +++C  + +     G L   Q + D     D     +++D Y  +G ++ A 
Sbjct: 105 DKYTFPSVIKACAGLFDA--EMGDLVYEQ-ILDMGFESDLFVGNALVDMYSRMGLLTRAR 161

Query: 287 YLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATA 346
            +F  MP RD V+W ++ISG   +  + EA  ++ E++   + P + T S +  A G   
Sbjct: 162 QVFDEMPVRDLVSWNSLISGYSSHGYYEEALEIYHELKNSWIVPDSFTVSSVLPAFGNLL 221

Query: 347 NIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVM 406
            +  G+ +H   +K+   S +++ N L++MY K     +A  +F  M  RD VS+N+M+ 
Sbjct: 222 VVKQGQGLHGFALKSGVNSVVVVNNGLVAMYLKFRRPTDARRVFDEMDVRDSVSYNTMIC 281

Query: 407 GFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMF 460
           G+    +  E++++F   L+    P+ +T   +L AC H   +S    ++N M 
Sbjct: 282 GYLKLEMVEESVRMFLENLDQ-FKPDLLTVSSVLRACGHLRDLSLAKYIYNYML 334



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 98/389 (25%), Positives = 154/389 (39%), Gaps = 100/389 (25%)

Query: 29  EAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEE-----MPERNVVSWTAMICG- 82
           +A+ +F  M  R+ VSYN M+ G+L+   + E+ R+F E      P+   VS     CG 
Sbjct: 260 DARRVFDEMDVRDSVSYNTMICGYLKLEMVEESVRMFLENLDQFKPDLLTVSSVLRACGH 319

Query: 83  --------------------------------LADAGRVCEARKLFEEMPERNVVSWNSM 110
                                            A  G +  AR +F  M  ++ VSWNS+
Sbjct: 320 LRDLSLAKYIYNYMLKAGFVLESTVRNILIDVYAKCGDMITARDVFNSMECKDTVSWNSI 379

Query: 111 VVGLIRNGELNEARKVFNSMPI----KNVISW---------------------------- 138
           + G I++G+L EA K+F  M I     + I++                            
Sbjct: 380 ISGYIQSGDLMEAMKLFKMMMIMEEQADHITYLMLISVSTRLADLKFGKGLHSNGIKSGI 439

Query: 139 -------NAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRR 191
                  NA+I  Y +C  +G+++ +F  M   + VTW ++IS   R G+   G  +  +
Sbjct: 440 CIDLSVSNALIDMYAKCGEVGDSLKIFSSMGTGDTVTWNTVISACVRFGDFATGLQVTTQ 499

Query: 192 MPRKNVVSWTA-------MIGGFAWNGFHKE---SLLLFIEMKGICDNGNNCNVQSCNSM 241
           M +  VV   A       M    A     KE    LL F         G    +Q  N++
Sbjct: 500 MRKSEVVPDMATFLVTLPMCASLAAKRLGKEIHCCLLRF---------GYESELQIGNAL 550

Query: 242 INGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDR----DA 297
           I  Y + G LE +  +F+ +  RD ++WT MI  Y   G+   A   F +M       D+
Sbjct: 551 IEMYSKCGCLENSSRVFERMSRRDVVTWTGMIYAYGMYGEGEKALETFADMEKSGIVPDS 610

Query: 298 VAWTAMISGLVQNELFVEATYLFMEMRAH 326
           V + A+I     + L  E    F +M+ H
Sbjct: 611 VVFIAIIYACSHSGLVDEGLACFEKMKTH 639


>gi|297740529|emb|CBI30711.3| unnamed protein product [Vitis vinifera]
          Length = 697

 Score =  281 bits (718), Expect = 8e-73,   Method: Compositional matrix adjust.
 Identities = 171/560 (30%), Positives = 280/560 (50%), Gaps = 56/560 (10%)

Query: 41  NVVSYNAMLSGFLQNGRLSEARRLFEEMPERNV--VSWTAMICGLADAGRVCEARKLFEE 98
            +  YN  +  F + G L  A  L  + P+ ++   ++ +++   AD   + + R++   
Sbjct: 67  KITDYNIEICRFCELGNLRRAMELINQSPKPDLELRTYCSVLQLCADLKSIQDGRRIHSI 126

Query: 99  MPERNV----VSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEA 154
           +   +V    V  + +V   +  G+L E R++F+ +  + V  WN ++ GY +     E+
Sbjct: 127 IQSNDVEVDGVLGSKLVFMYVTCGDLREGRRIFDKVANEKVFLWNLLMNGYAKIGNFRES 186

Query: 155 IVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHK 214
           + LF+ M E  +               VE    LF  +  ++V+SW +MI G+  NG  +
Sbjct: 187 LSLFKRMRELGI-------------RRVESARKLFDELGDRDVISWNSMISGYVSNGLSE 233

Query: 215 ESLLLFIEMKGICDNGNNCNVQSC-----NSMINGYIRFGRLEEAQNLFDTVPVRDEISW 269
           + L LF +M  +  N +   + S      N +++ Y + G L  A  +F+T+  R  +SW
Sbjct: 234 KGLDLFEQMLLLGINTDLATMVSVELTLNNCLLDMYSKSGNLNSAIQVFETMGERSVVSW 293

Query: 270 TSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVP 329
           TSMI GY   G    +  LFH M   D               LF                
Sbjct: 294 TSMIAGYAREGLSDMSVRLFHEMEKED---------------LF---------------- 322

Query: 330 PLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNI 389
           P + T + +  A  + A ++ G++IH  +++     D  + N L+ MY KCG +  A  +
Sbjct: 323 PNSITMACILPACASLAALERGQEIHGHILRNGFSLDRHVANALVDMYLKCGALGLARLL 382

Query: 390 FSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLV 449
           F  +  +DLVSW  M+ G+  HG  +E +  F  M  SG  P+ V+F+ IL ACSH+GL+
Sbjct: 383 FDMIPEKDLVSWTVMIAGYGMHGYGSEAIAAFNEMRNSGIEPDEVSFISILYACSHSGLL 442

Query: 450 SRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLG 509
             GW  FN M +   I+P  EHY  +++LL RAG + +A +F+  +P EPD  IWGALL 
Sbjct: 443 DEGWGFFNMMRNNCCIEPKSEHYACIVDLLARAGNLSKAYKFIKMMPIEPDATIWGALLC 502

Query: 510 ACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRK 569
            C     + ++AE  A+ + EL+P N   +V+L NIYA + +  E  KLR  +G +G+RK
Sbjct: 503 GCRIYH-DVKLAEKVAEHVFELEPENTGYYVLLANIYAEAEKWEEVKKLRERIGRRGLRK 561

Query: 570 VPGCSWLMRNGGIQMFLSGD 589
            PGCSW+   G + +F++GD
Sbjct: 562 NPGCSWIEIKGKVHIFVTGD 581



 Score =  129 bits (323), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 111/427 (25%), Positives = 184/427 (43%), Gaps = 71/427 (16%)

Query: 21  YSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMI 80
           Y   G + E + +F  +    V  +N +++G+ + G   E+  LF+ M E  +       
Sbjct: 146 YVTCGDLREGRRIFDKVANEKVFLWNLLMNGYAKIGNFRESLSLFKRMRELGI------- 198

Query: 81  CGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSM-------PIK 133
                  RV  ARKLF+E+ +R+V+SWNSM+ G + NG   +   +F  M        + 
Sbjct: 199 ------RRVESARKLFDELGDRDVISWNSMISGYVSNGLSEKGLDLFEQMLLLGINTDLA 252

Query: 134 NVISW-----NAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCL 188
            ++S      N ++  Y +   +  AI +FE M ER+VV+WTSMI+GY R G  +    L
Sbjct: 253 TMVSVELTLNNCLLDMYSKSGNLNSAIQVFETMGERSVVSWTSMIAGYAREGLSDMSVRL 312

Query: 189 FRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKG-ICDNGNNCNVQSCNSMINGYIR 247
           F  M ++++   +  +           +L    E+ G I  NG + +    N++++ Y++
Sbjct: 313 FHEMEKEDLFPNSITMACILPACASLAALERGQEIHGHILRNGFSLDRHVANALVDMYLK 372

Query: 248 FGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGL 307
            G L  A+ LFD +P +D +SWT MI GY   G  S                        
Sbjct: 373 CGALGLARLLFDMIPEKDLVSWTVMIAGYGMHGYGS------------------------ 408

Query: 308 VQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLG-------RQIHCVLMK 360
                  EA   F EMR  G+ P   +F  +  A   +  +D G       R   C+  K
Sbjct: 409 -------EAIAAFNEMRNSGIEPDEVSFISILYACSHSGLLDEGWGFFNMMRNNCCIEPK 461

Query: 361 TESESDLILENCLISMYAKCGVIDNAYNIFSNM-VSRDLVSWNSMVMGFSHHGLANETLK 419
           +E  +      C++ + A+ G +  AY     M +  D   W +++ G   +       K
Sbjct: 462 SEHYA------CIVDLLARAGNLSKAYKFIKMMPIEPDATIWGALLCGCRIYHDVKLAEK 515

Query: 420 VFESMLE 426
           V E + E
Sbjct: 516 VAEHVFE 522


>gi|224070863|ref|XP_002303270.1| predicted protein [Populus trichocarpa]
 gi|222840702|gb|EEE78249.1| predicted protein [Populus trichocarpa]
          Length = 805

 Score =  281 bits (718), Expect = 8e-73,   Method: Compositional matrix adjust.
 Identities = 183/632 (28%), Positives = 311/632 (49%), Gaps = 57/632 (9%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEM----PERNV 73
           ++ + + G +  A  +F  M +R++ S+N ++ G+ + G   EA  L+  +       +V
Sbjct: 76  LSMFVRFGDVGNAWNVFGRMGERDLFSWNVLVGGYTKAGFFDEALCLYHRILWAGIRPDV 135

Query: 74  VSWTAMICGLADAGRVCEARKLFEEMP----ERNVVSWNSMVVGLIRNGELNEARKVFNS 129
            ++ +++   A A  +   R++   +     + +V   N+++   ++ G++  AR +F+ 
Sbjct: 136 YTFPSVLRSCAGAMDLVRGREVHAHVVRFDFDMDVDVVNALITMYVKCGDVVSARMLFDK 195

Query: 130 MPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEER------------------------- 164
           MP ++ ISWNAMI+GY E     E + LF  M E                          
Sbjct: 196 MPTRDRISWNAMISGYFENDECLEGLELFFRMRELSIDPDLMTMTSVISACELLGDERLG 255

Query: 165 --------------NVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWN 210
                         N+  + S+I  Y   G  +E   +F  M  ++VVSWT +I G   N
Sbjct: 256 TQLHSYVVRTAYDGNISVYNSLIQMYLSVGHWKEAESVFSGMECRDVVSWTTIISGCVDN 315

Query: 211 GFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWT 270
               ++L  +  M+     G   +  +  S+++     G+L+    L +       I + 
Sbjct: 316 LLPDKALETYKTME---ITGTMPDEVTIASVLSACASLGQLDMGMKLHELAERTGHILYV 372

Query: 271 ----SMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAH 326
               S+ID Y    ++  A  +FH +PD+D ++WT++I+GL  N    EA   F +M   
Sbjct: 373 VVANSLIDMYSKCKRIEKALEIFHQIPDKDVISWTSVINGLRINNRCFEALIFFRKMILK 432

Query: 327 GVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNA 386
             P      S L   A   A +  G++IH   +K     D  L N ++ +Y +CG +  A
Sbjct: 433 SKPNSVTLISALSACARVGA-LMCGKEIHAHALKAGMGFDGFLPNAILDLYVRCGRMRTA 491

Query: 387 YNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHA 446
            N F N+  +D+ +WN ++ G++  G     +++F+ M+ES  +P+ VTF+ +L ACS +
Sbjct: 492 LNQF-NLNEKDVGAWNILLTGYAQKGKGAMVMELFKRMVESEINPDDVTFISLLCACSRS 550

Query: 447 GLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGA 506
           G+V+ G E F  M   Y I P  +HY  +++LLGRAGK+ EA EF+ R+P +PD  IWGA
Sbjct: 551 GMVTEGLEYFQRMKVNYHITPNLKHYACVVDLLGRAGKLNEAHEFIERMPIKPDPAIWGA 610

Query: 507 LLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKG 566
           LL AC     +  + E AA+ + + D  +   +++LCN+YA SG+  E  K+R  M  +G
Sbjct: 611 LLNACRI-HRHVLLGELAAQHIFKQDAESIGYYILLCNLYADSGKWDEVAKVRRTMKEEG 669

Query: 567 VRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
           +   PGCSW+   G +  FLSGD    Q+ EI
Sbjct: 670 LIVDPGCSWVEVKGKVHAFLSGDNFHPQMQEI 701



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 113/453 (24%), Positives = 201/453 (44%), Gaps = 78/453 (17%)

Query: 139 NAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRM----PR 194
           NA+++ +V    +G A  +F  M ER++ +W  ++ GY +AG  +E  CL+ R+     R
Sbjct: 73  NALLSMFVRFGDVGNAWNVFGRMGERDLFSWNVLVGGYTKAGFFDEALCLYHRILWAGIR 132

Query: 195 KNVVSWTAMIGGFA-------WNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIR 247
            +V ++ +++   A           H   +    +M          +V   N++I  Y++
Sbjct: 133 PDVYTFPSVLRSCAGAMDLVRGREVHAHVVRFDFDM----------DVDVVNALITMYVK 182

Query: 248 FGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGL 307
            G +  A+ LFD +P RD ISW +MI GY                               
Sbjct: 183 CGDVVSARMLFDKMPTRDRISWNAMISGYF------------------------------ 212

Query: 308 VQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDL 367
            +N+  +E   LF  MR   + P   T + +  A     +  LG Q+H  +++T  + ++
Sbjct: 213 -ENDECLEGLELFFRMRELSIDPDLMTMTSVISACELLGDERLGTQLHSYVVRTAYDGNI 271

Query: 368 ILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLES 427
            + N LI MY   G    A ++FS M  RD+VSW +++ G   + L ++ L+ +++M  +
Sbjct: 272 SVYNSLIQMYLSVGHWKEAESVFSGMECRDVVSWTTIISGCVDNLLPDKALETYKTMEIT 331

Query: 428 GTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYV----SMINLLGRAG 483
           GT P+ VT   +LSAC+  G +  G +L          + G   YV    S+I++  +  
Sbjct: 332 GTMPDEVTIASVLSACASLGQLDMGMKLHE-----LAERTGHILYVVVANSLIDMYSKCK 386

Query: 484 KIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDP--------LN 535
           +I++A E   ++P + D   W +++          E      K +L+  P        L+
Sbjct: 387 RIEKALEIFHQIP-DKDVISWTSVINGLRINNRCFEALIFFRKMILKSKPNSVTLISALS 445

Query: 536 APAHV--VLCNIYAASGRHVEEHKLRMDMGLKG 566
           A A V  ++C      G+ +  H L+  MG  G
Sbjct: 446 ACARVGALMC------GKEIHAHALKAGMGFDG 472



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 41/140 (29%), Positives = 73/140 (52%), Gaps = 2/140 (1%)

Query: 369 LENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESG 428
           L N L+SM+ + G + NA+N+F  M  RDL SWN +V G++  G  +E L ++  +L +G
Sbjct: 71  LGNALLSMFVRFGDVGNAWNVFGRMGERDLFSWNVLVGGYTKAGFFDEALCLYHRILWAG 130

Query: 429 THPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEA 488
             P+  TF  +L +C+ A  + RG E+ +A    +      +   ++I +  + G +  A
Sbjct: 131 IRPDVYTFPSVLRSCAGAMDLVRGREV-HAHVVRFDFDMDVDVVNALITMYVKCGDVVSA 189

Query: 489 EEFVLRLPFEPDHRIWGALL 508
                ++P   D   W A++
Sbjct: 190 RMLFDKMPTR-DRISWNAMI 208



 Score = 65.9 bits (159), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 66/280 (23%), Positives = 121/280 (43%), Gaps = 32/280 (11%)

Query: 1   MSERNHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSE 60
           ++ER      VV   S I  YSK   I++A  +F  +P ++V+S+ ++++G   N R  E
Sbjct: 362 LAERTGHILYVVVANSLIDMYSKCKRIEKALEIFHQIPDKDVISWTSVINGLRINNRCFE 421

Query: 61  ARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGEL 120
           A   F +M  ++  +   +I  L+   R                       VG +  G+ 
Sbjct: 422 ALIFFRKMILKSKPNSVTLISALSACAR-----------------------VGALMCGKE 458

Query: 121 NEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAG 180
             A  +   M     +  NA++  YV C  M  A+  F  + E++V  W  +++GY + G
Sbjct: 459 IHAHALKAGMGFDGFLP-NAILDLYVRCGRMRTALNQF-NLNEKDVGAWNILLTGYAQKG 516

Query: 181 EVEEGYCLFRRMPRKNV----VSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQ 236
           +      LF+RM    +    V++ +++   + +G   E L  F  MK       N    
Sbjct: 517 KGAMVMELFKRMVESEINPDDVTFISLLCACSRSGMVTEGLEYFQRMKVNYHITPNLKHY 576

Query: 237 SCNSMINGYIRFGRLEEAQNLFDTVPVR-DEISWTSMIDG 275
           +C   + G  R G+L EA    + +P++ D   W ++++ 
Sbjct: 577 ACVVDLLG--RAGKLNEAHEFIERMPIKPDPAIWGALLNA 614


>gi|302782567|ref|XP_002973057.1| hypothetical protein SELMODRAFT_98472 [Selaginella moellendorffii]
 gi|300159658|gb|EFJ26278.1| hypothetical protein SELMODRAFT_98472 [Selaginella moellendorffii]
          Length = 531

 Score =  281 bits (718), Expect = 9e-73,   Method: Compositional matrix adjust.
 Identities = 164/537 (30%), Positives = 293/537 (54%), Gaps = 25/537 (4%)

Query: 56  GRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNV----VSWNSMV 111
           G + EAR++F+ +  R+ VSWT+MI   A+ G   EA  L+++M    +    +++ S +
Sbjct: 6   GSVEEARKVFDGIKNRDAVSWTSMISSYANNGFCDEALDLYQQMDADGIQPDSITFTSAL 65

Query: 112 VGLIR--NGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTW 169
           +   +  +G+   AR V ++M    V S  A+I  Y  C  +  A   FE+++ ++VV W
Sbjct: 66  LACTKLADGKAIHARIVSSNMESDFVGS--ALINMYARCGDVSSARQAFEKIQNKHVVCW 123

Query: 170 TSMISGYCRAGEVEEGYCLFRRMPRKNV----VSWTAMIGGFAWNGFHKESLLLFIEMKG 225
           TS+++ Y + G   E   L+ RM  + V    V++   +G  A  G  KE   + + +  
Sbjct: 124 TSLMTAYVQTGHYREALDLYGRMDHEGVHADGVTYVTALGACASLGALKEGKAIHLRV-- 181

Query: 226 ICDNGNNCNVQSC---NSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQV 282
                + C  QS     +++  Y + G L+ A+ +F+ +     +   +++  Y   G +
Sbjct: 182 -----SECGFQSLVVHTALLTMYAKCGELDAARAVFNRLASNVAVQ-NALVTMYAKCGSL 235

Query: 283 SNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAA 342
             A   F     +D V+W AMI    Q+ L  EA  L+  M + GV P   T +    A 
Sbjct: 236 ELAKSAFEASGRKDLVSWNAMIGAYAQHGLGREALDLYQTMTSQGVLPDEVTIASSLSAC 295

Query: 343 GATANIDLGRQIHCVLMKTES-ESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSW 401
             + ++ LGR+IH  ++K +S +S L+++  L++MY +CG ++ A ++F +M  RD++SW
Sbjct: 296 AISGSLQLGREIHSRVLKNQSFQSSLMVQTALVNMYGRCGRLETARSMFEDMGQRDVLSW 355

Query: 402 NSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFD 461
            +M   ++  G A++ L ++  M+  G  PN +TF  IL  CSHAGL++RG E F  M  
Sbjct: 356 TAMTSVYAQQGHADQVLDLYLEMVLHGIRPNEITFTSILVGCSHAGLLARGVECFLEMQS 415

Query: 462 VYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIA 521
            +++ P  EH++ M++LLGR+G++++AE  V  +P++PD   W  +LG+C     +A+ A
Sbjct: 416 EHEVVPIREHFLCMVDLLGRSGRLRDAEALVESMPYQPDSVAWLTVLGSCK-THSDADTA 474

Query: 522 EHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMR 578
           + AA+R+ ELDP N   + +L +I+ A+G   E  ++++ M   G++K PG S + +
Sbjct: 475 KRAARRVKELDPENTSLYSLLSSIFTAAGLPQEALEVQLSMKEMGLKKPPGQSLIEK 531



 Score =  145 bits (366), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 93/347 (26%), Positives = 161/347 (46%), Gaps = 42/347 (12%)

Query: 176 YCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNV 235
           Y + G VEE   +F  +  ++ VSWT+MI  +A NGF  E+L L+ +M       ++   
Sbjct: 2   YGKCGSVEEARKVFDGIKNRDAVSWTSMISSYANNGFCDEALDLYQQMDADGIQPDSITF 61

Query: 236 QS----CNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHN 291
            S    C  + +G     R+  +    D V        +++I+ Y   G VS+A   F  
Sbjct: 62  TSALLACTKLADGKAIHARIVSSNMESDFVG-------SALINMYARCGDVSSARQAFEK 114

Query: 292 MPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLG 351
           + ++  V WT++++  VQ   + EA  L+  M   GV     T+    GA  +   +  G
Sbjct: 115 IQNKHVVCWTSLMTAYVQTGHYREALDLYGRMDHEGVHADGVTYVTALGACASLGALKEG 174

Query: 352 RQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVS---------------- 395
           + IH  + +   +S L++   L++MYAKCG +D A  +F+ + S                
Sbjct: 175 KAIHLRVSECGFQS-LVVHTALLTMYAKCGELDAARAVFNRLASNVAVQNALVTMYAKCG 233

Query: 396 --------------RDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILS 441
                         +DLVSWN+M+  ++ HGL  E L ++++M   G  P+ VT    LS
Sbjct: 234 SLELAKSAFEASGRKDLVSWNAMIGAYAQHGLGREALDLYQTMTSQGVLPDEVTIASSLS 293

Query: 442 ACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEA 488
           AC+ +G +  G E+ + +      Q       +++N+ GR G+++ A
Sbjct: 294 ACAISGSLQLGREIHSRVLKNQSFQSSLMVQTALVNMYGRCGRLETA 340



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 125/508 (24%), Positives = 229/508 (45%), Gaps = 57/508 (11%)

Query: 12  VHLTSSITKYSKRGFIDEAKALFQLMP---------------------------QRNVVS 44
           V  TS I+ Y+  GF DEA  L+Q M                               +VS
Sbjct: 24  VSWTSMISSYANNGFCDEALDLYQQMDADGIQPDSITFTSALLACTKLADGKAIHARIVS 83

Query: 45  YN--------AMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLF 96
            N        A+++ + + G +S AR+ FE++  ++VV WT+++      G   EA  L+
Sbjct: 84  SNMESDFVGSALINMYARCGDVSSARQAFEKIQNKHVVCWTSLMTAYVQTGHYREALDLY 143

Query: 97  EEMPERNV----VSWNSMVVGLIRNGELNEARKV---FNSMPIKNVISWNAMIAGYVECC 149
             M    V    V++ + +      G L E + +    +    ++++   A++  Y +C 
Sbjct: 144 GRMDHEGVHADGVTYVTALGACASLGALKEGKAIHLRVSECGFQSLVVHTALLTMYAKCG 203

Query: 150 MMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAW 209
            +  A  +F  +   NV    ++++ Y + G +E     F    RK++VSW AMIG +A 
Sbjct: 204 ELDAARAVFNRLAS-NVAVQNALVTMYAKCGSLELAKSAFEASGRKDLVSWNAMIGAYAQ 262

Query: 210 NGFHKESLLLFIEM--KGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEI 267
           +G  +E+L L+  M  +G+  +            I+G ++ GR   ++ L +       +
Sbjct: 263 HGLGREALDLYQTMTSQGVLPDEVTIASSLSACAISGSLQLGREIHSRVLKNQSFQSSLM 322

Query: 268 SWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHG 327
             T++++ Y   G++  A  +F +M  RD ++WTAM S   Q     +   L++EM  HG
Sbjct: 323 VQTALVNMYGRCGRLETARSMFEDMGQRDVLSWTAMTSVYAQQGHADQVLDLYLEMVLHG 382

Query: 328 VPPLNATF-SVLFGAAGATANIDLGRQIHCVL-MKTESESDLILEN--CLISMYAKCGVI 383
           + P   TF S+L G + A     L R + C L M++E E   I E+  C++ +  + G +
Sbjct: 383 IRPNEITFTSILVGCSHAGL---LARGVECFLEMQSEHEVVPIREHFLCMVDLLGRSGRL 439

Query: 384 DNAYNIFSNMVSR-DLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSA 442
            +A  +  +M  + D V+W +++     H  A+   +    + E    P + +   +LS+
Sbjct: 440 RDAEALVESMPYQPDSVAWLTVLGSCKTHSDADTAKRAARRVKE--LDPENTSLYSLLSS 497

Query: 443 C-SHAGLVSRGWELFNAMFDV-YKIQPG 468
             + AGL     E+  +M ++  K  PG
Sbjct: 498 IFTAAGLPQEALEVQLSMKEMGLKKPPG 525



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 57/205 (27%), Positives = 92/205 (44%), Gaps = 32/205 (15%)

Query: 376 MYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVT 435
           MY KCG ++ A  +F  + +RD VSW SM+  ++++G  +E L +++ M   G  P+S+T
Sbjct: 1   MYGKCGSVEEARKVFDGIKNRDAVSWTSMISSYANNGFCDEALDLYQQMDADGIQPDSIT 60

Query: 436 FLGILSACS--------HAGLVSRGWE---LFNAMFDVY--------------KIQPGPE 470
           F   L AC+        HA +VS   E   + +A+ ++Y              KIQ   +
Sbjct: 61  FTSALLACTKLADGKAIHARIVSSNMESDFVGSALINMYARCGDVSSARQAFEKIQ--NK 118

Query: 471 HYV---SMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAA-- 525
           H V   S++    + G  +EA +   R+  E  H      + A G C     + E  A  
Sbjct: 119 HVVCWTSLMTAYVQTGHYREALDLYGRMDHEGVHADGVTYVTALGACASLGALKEGKAIH 178

Query: 526 KRLLELDPLNAPAHVVLCNIYAASG 550
            R+ E    +   H  L  +YA  G
Sbjct: 179 LRVSECGFQSLVVHTALLTMYAKCG 203


>gi|302801466|ref|XP_002982489.1| hypothetical protein SELMODRAFT_51832 [Selaginella moellendorffii]
 gi|300149588|gb|EFJ16242.1| hypothetical protein SELMODRAFT_51832 [Selaginella moellendorffii]
          Length = 526

 Score =  281 bits (718), Expect = 9e-73,   Method: Compositional matrix adjust.
 Identities = 163/536 (30%), Positives = 282/536 (52%), Gaps = 20/536 (3%)

Query: 25  GFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLA 84
           G I+ A+A+F  M   N  S+N +L  F QN  + +A+  F+ MP+ ++VSW A+I   A
Sbjct: 1   GSIESARAVFHAMGDPNHFSWNILLGAFAQNAHIDDAKTTFDRMPQWDLVSWNALISAFA 60

Query: 85  DAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAG 144
             G   EA+ +F  M  R+VVSW+S++    ++G +++A +V + +P  +V S   M+A 
Sbjct: 61  HHGHSEEAKAMFLAMENRDVVSWSSVIKAYAQSGLVDQASQVMDRIPKWDVQSITGMVAA 120

Query: 145 YVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMI 204
           + +   +  A  +F+ MEERNVV WT++I+G   + ++EE   +FR +P ++V++W AMI
Sbjct: 121 FAQNGHLDAASAMFDRMEERNVVVWTALITGLSLSYQIEEAETIFRLIPGRDVIAWNAMI 180

Query: 205 GGFAWNGFHKESLLLFIEMK----------GICDNGNNCNVQSCNSMINGYIRFGRLEEA 254
             ++ NG    + LLF  M           GI       ++ S N++++ Y   G   +A
Sbjct: 181 TAYSQNGDPHTAKLLFDVMPERNVDLESAVGIFSKMPQHDLISWNALVSAYAANGHPLQA 240

Query: 255 QNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFV 314
           +   D++P RD +SWT+++ GY   G +  A    + MP  D V W  MIS        V
Sbjct: 241 RVSLDSMPKRDVVSWTTVVAGYTQTGDIDKAISTMNRMPMWDLVTWNVMISAYAGIGNCV 300

Query: 315 EATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLI 374
            A  +F + +   +   N     L  A   T N+ L             E D I    LI
Sbjct: 301 IAKKMFDDKQQRNLISWNG----LIAAYAQTGNLALA----VASFHKMPEWDSISWIGLI 352

Query: 375 SMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSV 434
             YA+CG + +A  +F ++ SR  +++++++  ++H G  +E  +VF +M   G  P  V
Sbjct: 353 VAYAQCGHVSDACAMFEDIPSRGTLAFSAILGAYAHTGHHSEAGEVFRAMQLEGVRPTKV 412

Query: 435 TFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLR 494
           +++ +L+  S+ G++    E F  M     I P  +H+ S+++++GRA    +AEE +  
Sbjct: 413 SYMALLTGFSYGGMLDECREAFVGMLSA-GISPAIQHFRSVVDVIGRARDPGDAEELIRT 471

Query: 495 LPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASG 550
           +P+  D  +W +LLGAC    G+ E A  AA+++ EL+P  +  +V+L  +  + G
Sbjct: 472 MPYVADSVVWTSLLGACRM-HGDLERAALAARKVTELEPDISVPYVLLAEMIKSEG 526



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 120/456 (26%), Positives = 196/456 (42%), Gaps = 53/456 (11%)

Query: 118 GELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYC 177
           G +  AR VF++M   N  SWN ++  + +   + +A   F+ M + ++V+W ++IS + 
Sbjct: 1   GSIESARAVFHAMGDPNHFSWNILLGAFAQNAHIDDAKTTFDRMPQWDLVSWNALISAFA 60

Query: 178 RAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQS 237
             G  EE   +F  M  ++VVSW+++I  +A +G       L  +   + D     +VQS
Sbjct: 61  HHGHSEEAKAMFLAMENRDVVSWSSVIKAYAQSG-------LVDQASQVMDRIPKWDVQS 113

Query: 238 CNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDA 297
              M+  + + G L+ A  +FD +  R+ + WT++I G     Q+  A  +F  +P RD 
Sbjct: 114 ITGMVAAFAQNGHLDAASAMFDRMEERNVVVWTALITGLSLSYQIEEAETIFRLIPGRDV 173

Query: 298 VAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCV 357
           +AW AMI+   QN     A  LF  M                       N+DL   +   
Sbjct: 174 IAWNAMITAYSQNGDPHTAKLLFDVMPER--------------------NVDLESAVG-- 211

Query: 358 LMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANET 417
           +     + DLI  N L+S YA  G    A     +M  RD+VSW ++V G++  G  ++ 
Sbjct: 212 IFSKMPQHDLISWNALVSAYAANGHPLQARVSLDSMPKRDVVSWTTVVAGYTQTGDIDKA 271

Query: 418 LKVFESMLESGTHP--NSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSM 475
           +     M      P  + VT+  ++SA +  G       +   MFD  K Q     +  +
Sbjct: 272 ISTMNRM------PMWDLVTWNVMISAYAGIGNCV----IAKKMFD-DKQQRNLISWNGL 320

Query: 476 INLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGA---CGFCEGNAEIAEHAAKRLLELD 532
           I    + G +  A     ++P E D   W  L+ A   CG       + E    R     
Sbjct: 321 IAAYAQTGNLALAVASFHKMP-EWDSISWIGLIVAYAQCGHVSDACAMFEDIPSR----- 374

Query: 533 PLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVR 568
                A   +   YA +G H E  ++   M L+GVR
Sbjct: 375 --GTLAFSAILGAYAHTGHHSEAGEVFRAMQLEGVR 408



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 75/272 (27%), Positives = 140/272 (51%), Gaps = 8/272 (2%)

Query: 7   PKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFE 66
           P+  ++   + ++ Y+  G   +A+     MP+R+VVS+  +++G+ Q G + +A     
Sbjct: 217 PQHDLISWNALVSAYAANGHPLQARVSLDSMPKRDVVSWTTVVAGYTQTGDIDKAISTMN 276

Query: 67  EMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKV 126
            MP  ++V+W  MI   A  G    A+K+F++  +RN++SWN ++    + G L  A   
Sbjct: 277 RMPMWDLVTWNVMISAYAGIGNCVIAKKMFDDKQQRNLISWNGLIAAYAQTGNLALAVAS 336

Query: 127 FNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGY 186
           F+ MP  + ISW  +I  Y +C  + +A  +FE++  R  + +++++  Y   G   E  
Sbjct: 337 FHKMPEWDSISWIGLIVAYAQCGHVSDACAMFEDIPSRGTLAFSAILGAYAHTGHHSEAG 396

Query: 187 CLFRRMP----RKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMI 242
            +FR M     R   VS+ A++ GF++ G   E    F+   G+   G +  +Q   S++
Sbjct: 397 EVFRAMQLEGVRPTKVSYMALLTGFSYGGMLDECREAFV---GMLSAGISPAIQHFRSVV 453

Query: 243 NGYIRFGRLEEAQNLFDTVP-VRDEISWTSMI 273
           +   R     +A+ L  T+P V D + WTS++
Sbjct: 454 DVIGRARDPGDAEELIRTMPYVADSVVWTSLL 485


>gi|222617355|gb|EEE53487.1| hypothetical protein OsJ_36641 [Oryza sativa Japonica Group]
          Length = 921

 Score =  281 bits (718), Expect = 9e-73,   Method: Compositional matrix adjust.
 Identities = 167/505 (33%), Positives = 256/505 (50%), Gaps = 45/505 (8%)

Query: 91  EARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSM----PIKNVISWNAMIAGYV 146
           +A   F  MP R+  +++ ++  L   G +   R V + +     +++    NA+I  Y 
Sbjct: 423 DALAAFSAMPRRDSFTYSFLIKALSAAG-VAPVRAVHSHVVKLGSVEDTFVGNALIDAYS 481

Query: 147 ECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGG 206
           +     +A  +F+EM ER+VV+W + ++   R GE+     LF  MP K+ VSW      
Sbjct: 482 KNGGFSDARKVFDEMPERDVVSWNTAMAAMVREGELAGVRKLFDEMPEKDTVSW------ 535

Query: 207 FAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDE 266
                                           N++++GY + G +E A  LF  +P R+ 
Sbjct: 536 --------------------------------NTILDGYTKAGEVEAAFELFQRMPERNV 563

Query: 267 ISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAH 326
           +SW++M+ GY   G +  A  +F  MP ++ V WT M+S   Q  L  EA  LF +M+  
Sbjct: 564 VSWSTMVSGYCKKGDLEMARVIFDKMPSKNLVTWTIMVSACAQKGLVDEAGKLFAQMKEA 623

Query: 327 GVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNA 386
            V    A    +  A   + ++ LG++IH  + K        + N LI M+ KCG ++ A
Sbjct: 624 SVELDVAAVVSILAACAESGSLSLGKRIHRYVRKRNLGRSTHVCNALIDMFCKCGCVNRA 683

Query: 387 YNIF-SNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSH 445
             +F +  V +D VSWNS++ GF+ HG  ++ L++F  M + G +P++VT + +LSAC+H
Sbjct: 684 DYVFDTETVQKDSVSWNSIIGGFAMHGHGDKALELFAQMKQQGFNPDAVTMINVLSACTH 743

Query: 446 AGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWG 505
            G V  G   F+ M   Y I P  EHY  MI+LLGR G IKEA + +  +P+EP+  IWG
Sbjct: 744 MGFVDEGRRHFSNMERDYGIMPQIEHYGCMIDLLGRGGLIKEAVDLIKSMPWEPNEVIWG 803

Query: 506 ALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLK 565
           +LL AC   + N E AE A   L +L P NA  + VL NIYA +G+  +  K RM M   
Sbjct: 804 SLLSACRLHK-NVEYAEIAVNELSKLQPSNAGNYAVLSNIYAEAGQWSDMAKARMQMKGT 862

Query: 566 GVRKVPGCSWLMRNGGIQMFLSGDK 590
           G +K  G SW+  N     F  GD+
Sbjct: 863 GSQKTAGSSWVELNETFHEFTVGDR 887



 Score =  184 bits (468), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 119/393 (30%), Positives = 203/393 (51%), Gaps = 17/393 (4%)

Query: 25  GFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWT----AMI 80
           G   +A A F  MP+R+  +Y+ ++      G ++  R +   + +   V  T    A+I
Sbjct: 419 GAPRDALAAFSAMPRRDSFTYSFLIKALSAAG-VAPVRAVHSHVVKLGSVEDTFVGNALI 477

Query: 81  CGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNA 140
              +  G   +ARK+F+EMPER+VVSWN+ +  ++R GEL   RK+F+ MP K+ +SWN 
Sbjct: 478 DAYSKNGGFSDARKVFDEMPERDVVSWNTAMAAMVREGELAGVRKLFDEMPEKDTVSWNT 537

Query: 141 MIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSW 200
           ++ GY +   +  A  LF+ M ERNVV+W++M+SGYC+ G++E    +F +MP KN+V+W
Sbjct: 538 ILDGYTKAGEVEAAFELFQRMPERNVVSWSTMVSGYCKKGDLEMARVIFDKMPSKNLVTW 597

Query: 201 TAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDT 260
           T M+   A  G   E+  LF +MK   +     +V +  S++      G L   + +   
Sbjct: 598 TIMVSACAQKGLVDEAGKLFAQMK---EASVELDVAAVVSILAACAESGSLSLGKRIHRY 654

Query: 261 VPVRDEISWT----SMIDGYLSVGQVSNAYYLFHNMP-DRDAVAWTAMISGLVQNELFVE 315
           V  R+    T    ++ID +   G V+ A Y+F      +D+V+W ++I G   +    +
Sbjct: 655 VRKRNLGRSTHVCNALIDMFCKCGCVNRADYVFDTETVQKDSVSWNSIIGGFAMHGHGDK 714

Query: 316 ATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILEN--CL 373
           A  LF +M+  G  P   T   +  A      +D GR+ H   M+ +      +E+  C+
Sbjct: 715 ALELFAQMKQQGFNPDAVTMINVLSACTHMGFVDEGRR-HFSNMERDYGIMPQIEHYGCM 773

Query: 374 ISMYAKCGVIDNAYNIFSNMV-SRDLVSWNSMV 405
           I +  + G+I  A ++  +M    + V W S++
Sbjct: 774 IDLLGRGGLIKEAVDLIKSMPWEPNEVIWGSLL 806



 Score =  159 bits (402), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 102/335 (30%), Positives = 169/335 (50%), Gaps = 51/335 (15%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWT 77
           I  YSK G   +A+ +F  MP+R+VVS+N  ++  ++ G L+  R+LF+EMPE++ VSW 
Sbjct: 477 IDAYSKNGGFSDARKVFDEMPERDVVSWNTAMAAMVREGELAGVRKLFDEMPEKDTVSWN 536

Query: 78  AMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVIS 137
            ++ G   AG V  A +LF+ MPERNVVSW++MV G  + G+L  AR +F+ MP KN+++
Sbjct: 537 TILDGYTKAGEVEAAFELFQRMPERNVVSWSTMVSGYCKKGDLEMARVIFDKMPSKNLVT 596

Query: 138 WNAMIAGYVECCMMGEAIVLFEEMEE---------------------------------- 163
           W  M++   +  ++ EA  LF +M+E                                  
Sbjct: 597 WTIMVSACAQKGLVDEAGKLFAQMKEASVELDVAAVVSILAACAESGSLSLGKRIHRYVR 656

Query: 164 -----RNVVTWTSMISGYCRAGEVEEG-YCLFRRMPRKNVVSWTAMIGGFAWNGFHKESL 217
                R+     ++I  +C+ G V    Y       +K+ VSW ++IGGFA +G   ++L
Sbjct: 657 KRNLGRSTHVCNALIDMFCKCGCVNRADYVFDTETVQKDSVSWNSIIGGFAMHGHGDKAL 716

Query: 218 LLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRD-----EIS-WTS 271
            LF +MK     G N +  +  ++++     G ++E +  F  +  RD     +I  +  
Sbjct: 717 ELFAQMK---QQGFNPDAVTMINVLSACTHMGFVDEGRRHFSNME-RDYGIMPQIEHYGC 772

Query: 272 MIDGYLSVGQVSNAYYLFHNMP-DRDAVAWTAMIS 305
           MID     G +  A  L  +MP + + V W +++S
Sbjct: 773 MIDLLGRGGLIKEAVDLIKSMPWEPNEVIWGSLLS 807


>gi|357129947|ref|XP_003566620.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09040,
           mitochondrial-like [Brachypodium distachyon]
          Length = 902

 Score =  281 bits (718), Expect = 9e-73,   Method: Compositional matrix adjust.
 Identities = 190/629 (30%), Positives = 305/629 (48%), Gaps = 56/629 (8%)

Query: 15  TSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMP----E 70
           +S I  Y+K G I +A  +F    ++NVV +NAML+G ++N    EA ++F  M     E
Sbjct: 239 SSLINLYAKCGCIGDAILVFDCSGEKNVVMWNAMLNGLVRNEYQVEAIQMFLYMKRLGLE 298

Query: 71  RNVVSWTAMI--CGLADA---------------------------------GRVCEARKL 95
            +  ++ +++  C   D+                                 G + +A+ L
Sbjct: 299 ADEFTYVSVLGACAHLDSHCLGRQVQCVTIKNCMDASLFVANATLDMHSKFGAIDDAKTL 358

Query: 96  FEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAI 155
           F  +  ++ VSWN+++VGL  N E  EA  +   M +  V       A  +  C    A 
Sbjct: 359 FNLITYKDTVSWNALLVGLTHNEEDEEAIHMLKGMNLDGVTPDEVSFATVINACSNIRAT 418

Query: 156 VLFEEMEE--------RNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGF 207
              +++           N    +S+I  Y + G+VE    +  ++   ++V    +I G 
Sbjct: 419 ETGKQIHCLAMKHSICSNHAVGSSLIDFYSKHGDVESCRKVLAQVDASSIVPRNVLIAGL 478

Query: 208 AWNGFHKESLLLFIEM--KGICDNGNNCN--VQSCNSMINGYIRFGRLEEAQNLFDTVPV 263
             N    E++ LF ++   G+  +    +  +  C  +++  I  G+      L      
Sbjct: 479 VQNNREDEAIDLFQQVLRDGLKPSSFTFSSILSGCTGLLSSII--GKQVHCYTLKSGFLN 536

Query: 264 RDEISWTSMIDGYLSVGQVSNAYYLFHNMPD-RDAVAWTAMISGLVQNELFVEATYLFME 322
            D     S++  YL      +A  L   MPD ++ V WTA++SG  QN    ++   F  
Sbjct: 537 DDTSVGVSLVGTYLKARMPEDANKLLIEMPDHKNLVEWTAIVSGYAQNGYSYQSLLSFWR 596

Query: 323 MRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGV 382
           MR++ V P   TF+ +  A      +  G++IH +++K+   S     + +I MY+KCG 
Sbjct: 597 MRSYDVHPDEVTFASILKACSEMTALSDGKEIHGLIIKSGFGSYKTATSAIIDMYSKCGD 656

Query: 383 IDNAYNIFSNMVSR-DLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILS 441
           I +++  F  + S+ D+  WNSM++GF+ +G A+E L +F+ M +S    + VTFLG+L 
Sbjct: 657 IISSFEAFKELKSKQDITLWNSMILGFAKNGYADEALLLFQKMQDSQIKSDEVTFLGVLI 716

Query: 442 ACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDH 501
           AC+HAGL+S G   F++M  VY I P  +HY   I+LLGR G ++EA+E +  LPF PD 
Sbjct: 717 ACAHAGLISEGRHYFDSMSKVYGIMPRVDHYACFIDLLGRGGHLQEAQEVINELPFRPDG 776

Query: 502 RIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMD 561
            IW   L AC     + E  E AAK L+EL+P N+  +V+L N+YAA+G  VE    R  
Sbjct: 777 VIWATYLAACRM-HKDEERGEIAAKELVELEPQNSSTYVLLSNMYAAAGNWVEAKMAREA 835

Query: 562 MGLKGVRKVPGCSWLMRNGGIQMFLSGDK 590
           M  KG  K PGCSW+       +FL  DK
Sbjct: 836 MREKGATKFPGCSWITVGNKTSLFLVQDK 864



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 126/517 (24%), Positives = 246/517 (47%), Gaps = 37/517 (7%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEM------PER 71
           +  Y++ G + +A+ +F  +   + V + +M+SG+ + GR  EA  LF  M      P+R
Sbjct: 73  VNMYARCGRVGDARRVFGGISLPDTVCWASMISGYHRAGRFQEAVCLFTRMEKMGSSPDR 132

Query: 72  NVVSWTAMICGLADAGRVCEARKLFEEMPE-RNVVSWNSMVVGLIR-NGELNEARKVFNS 129
             V+  A++C L   GR+ +AR L   MP   + V+WN+++ G  + +G  +E   ++  
Sbjct: 133 --VTCVAVVCALTALGRLEDARTLLHRMPAPSSTVAWNAVISGYAQQSGIEHEVFGLYKD 190

Query: 130 M------PIKN----VISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRA 179
           M      P ++    ++S  A    ++E   +  A V      + NV   +S+I+ Y + 
Sbjct: 191 MRCWGLWPTRSTFASMLSAAANATAFIEGRQVHAAAV--RHGLDANVFVGSSLINLYAKC 248

Query: 180 GEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGI---CDNGNNCNVQ 236
           G + +   +F     KNVV W AM+ G   N +  E++ +F+ MK +    D     +V 
Sbjct: 249 GCIGDAILVFDCSGEKNVVMWNAMLNGLVRNEYQVEAIQMFLYMKRLGLEADEFTYVSVL 308

Query: 237 SCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRD 296
              + ++ +   GR  +   + + +     ++  + +D +   G + +A  LF+ +  +D
Sbjct: 309 GACAHLDSHC-LGRQVQCVTIKNCMDASLFVA-NATLDMHSKFGAIDDAKTLFNLITYKD 366

Query: 297 AVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHC 356
            V+W A++ GL  NE   EA ++   M   GV P   +F+ +  A       + G+QIHC
Sbjct: 367 TVSWNALLVGLTHNEEDEEAIHMLKGMNLDGVTPDEVSFATVINACSNIRATETGKQIHC 426

Query: 357 VLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANE 416
           + MK    S+  + + LI  Y+K G +++   + + + +  +V  N ++ G   +   +E
Sbjct: 427 LAMKHSICSNHAVGSSLIDFYSKHGDVESCRKVLAQVDASSIVPRNVLIAGLVQNNREDE 486

Query: 417 TLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPG-----PEH 471
            + +F+ +L  G  P+S TF  ILS C+  GL+S    +       Y ++ G        
Sbjct: 487 AIDLFQQVLRDGLKPSSFTFSSILSGCT--GLLS---SIIGKQVHCYTLKSGFLNDDTSV 541

Query: 472 YVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALL 508
            VS++    +A   ++A + ++ +P   +   W A++
Sbjct: 542 GVSLVGTYLKARMPEDANKLLIEMPDHKNLVEWTAIV 578



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 96/356 (26%), Positives = 171/356 (48%), Gaps = 42/356 (11%)

Query: 140 AMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPR----- 194
           A++  Y  C  +G+A  +F  +   + V W SMISGY RAG  +E  CLF RM +     
Sbjct: 71  ALVNMYARCGRVGDARRVFGGISLPDTVCWASMISGYHRAGRFQEAVCLFTRMEKMGSSP 130

Query: 195 -------------------------------KNVVSWTAMIGGFA-WNGFHKESLLLFIE 222
                                           + V+W A+I G+A  +G   E   L+ +
Sbjct: 131 DRVTCVAVVCALTALGRLEDARTLLHRMPAPSSTVAWNAVISGYAQQSGIEHEVFGLYKD 190

Query: 223 MK--GICDNGNN-CNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSV 279
           M+  G+    +   ++ S  +    +I  GR   A  +   +     +  +S+I+ Y   
Sbjct: 191 MRCWGLWPTRSTFASMLSAAANATAFIE-GRQVHAAAVRHGLDANVFVG-SSLINLYAKC 248

Query: 280 GQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLF 339
           G + +A  +F    +++ V W AM++GLV+NE  VEA  +F+ M+  G+     T+  + 
Sbjct: 249 GCIGDAILVFDCSGEKNVVMWNAMLNGLVRNEYQVEAIQMFLYMKRLGLEADEFTYVSVL 308

Query: 340 GAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLV 399
           GA     +  LGRQ+ CV +K   ++ L + N  + M++K G ID+A  +F+ +  +D V
Sbjct: 309 GACAHLDSHCLGRQVQCVTIKNCMDASLFVANATLDMHSKFGAIDDAKTLFNLITYKDTV 368

Query: 400 SWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWEL 455
           SWN++++G +H+    E + + + M   G  P+ V+F  +++ACS+      G ++
Sbjct: 369 SWNALLVGLTHNEEDEEAIHMLKGMNLDGVTPDEVSFATVINACSNIRATETGKQI 424



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 62/237 (26%), Positives = 90/237 (37%), Gaps = 26/237 (10%)

Query: 327 GVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNA 386
           GV P     +    A      +  G+Q HC   K    S       L++MYA+CG + +A
Sbjct: 26  GVRPDQFDLAATLSACSRLGALVSGKQAHCDAEKRGLGSGAFCAAALVNMYARCGRVGDA 85

Query: 387 YNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHA 446
             +F  +   D V W SM+ G+   G   E + +F  M + G+ P+ VT + ++ A +  
Sbjct: 86  RRVFGGISLPDTVCWASMISGYHRAGRFQEAVCLFTRMEKMGSSPDRVTCVAVVCALTAL 145

Query: 447 GLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWG- 505
           G +     L + M       P P   V+   ++    +    E  V  L    D R WG 
Sbjct: 146 GRLEDARTLLHRM-------PAPSSTVAWNAVISGYAQQSGIEHEVFGL--YKDMRCWGL 196

Query: 506 ------------ALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASG 550
                       A   A  F EG      HAA     LD  N      L N+YA  G
Sbjct: 197 WPTRSTFASMLSAAANATAFIEGR---QVHAAAVRHGLDA-NVFVGSSLINLYAKCG 249



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 56/244 (22%), Positives = 99/244 (40%), Gaps = 47/244 (19%)

Query: 271 SMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPP 330
           ++++ Y   G+V +A  +F  +   D V W +MISG  +   F EA  LF  M   G  P
Sbjct: 71  ALVNMYARCGRVGDARRVFGGISLPDTVCWASMISGYHRAGRFQEAVCLFTRMEKMGSSP 130

Query: 331 LNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIF 390
                                 ++ CV               ++      G +++A  + 
Sbjct: 131 ---------------------DRVTCV--------------AVVCALTALGRLEDARTLL 155

Query: 391 SNM-VSRDLVSWNSMVMGFSHH-GLANETLKVFESMLESGTHPNSVTFLGILSACSHAGL 448
             M      V+WN+++ G++   G+ +E   +++ M   G  P   TF  +LSA ++A  
Sbjct: 156 HRMPAPSSTVAWNAVISGYAQQSGIEHEVFGLYKDMRCWGLWPTRSTFASMLSAAANATA 215

Query: 449 VSRGWELFNAMFDVYKIQPGPEHYV----SMINLLGRAGKIKEAEEFVLRLPFEPDHRIW 504
              G ++  A      ++ G +  V    S+INL  + G I +A   V     E +  +W
Sbjct: 216 FIEGRQVHAA-----AVRHGLDANVFVGSSLINLYAKCGCIGDA-ILVFDCSGEKNVVMW 269

Query: 505 GALL 508
            A+L
Sbjct: 270 NAML 273


>gi|242059059|ref|XP_002458675.1| hypothetical protein SORBIDRAFT_03g037910 [Sorghum bicolor]
 gi|241930650|gb|EES03795.1| hypothetical protein SORBIDRAFT_03g037910 [Sorghum bicolor]
          Length = 894

 Score =  281 bits (718), Expect = 9e-73,   Method: Compositional matrix adjust.
 Identities = 165/536 (30%), Positives = 282/536 (52%), Gaps = 20/536 (3%)

Query: 53  LQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVV 112
           LQ   L  A ++FE++       W  ++ GLA +    +A   +++  E+ +   N    
Sbjct: 355 LQQSDLVFAHKVFEQIESPTTFLWNTLLRGLAQSDAPKDAIVFYKKAQEKGMKPDNMTFP 414

Query: 113 GLIRNGELNEARK---VFNSMPIK-----NVISWNAMIAGYVECCMMGEAIVLFEEMEER 164
            +++      A K     +S  IK     ++   N++I  Y  C  +  A  +F+EM  +
Sbjct: 415 FVLKACAKTYAPKEGEQMHSHVIKLGFLLDIFVSNSLIHLYAACGDLVCARSIFDEMLVK 474

Query: 165 NVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNV----VSWTAMIGGFAWNG--FHKESLL 218
           +VV+W S+I GY +    +E   LF  M  + V    V+   +I      G     + ++
Sbjct: 475 DVVSWNSLIGGYSQRNRFKEVLALFELMQAEEVQADKVTMVKVISACTHLGDWSMADCMV 534

Query: 219 LFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLS 278
            +IE   I       +V   N++I+ Y R G+L+ A+ +F  +  ++ ++  +MI  Y  
Sbjct: 535 RYIERNHI-----EVDVYLGNTLIDYYCRIGQLQSAEKVFSQMKDKNTVTLNAMIHAYAK 589

Query: 279 VGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVL 338
            G + +A  +F  +P++D ++W++MI    Q   F ++  LF +M+   V P     + +
Sbjct: 590 GGNLVSAKKIFDQIPNKDLISWSSMICAYSQASHFSDSLELFRQMQRAKVKPDAVVIASV 649

Query: 339 FGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDL 398
             A      +DLG+ IH  + +   ++D I+EN LI M+AKCG +  A  +F+ M  +D 
Sbjct: 650 LSACAHLGALDLGKWIHDYVRRNNIKTDTIMENSLIDMFAKCGCMQEALQVFTEMEEKDT 709

Query: 399 VSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNA 458
           +SWNS+++G +++G  +E L +F SML  G  PN VTFLG+L AC++  LV  G + F  
Sbjct: 710 LSWNSIILGLANNGFEDEALNIFYSMLTEGPRPNEVTFLGVLIACANKRLVQEGLDHFER 769

Query: 459 MFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNA 518
           M  V+ ++P  +HY  ++ +L RAG++++A+ F+  +P  PD  +W  LLGAC    GN 
Sbjct: 770 MKTVHNLEPQMKHYGCVVGILSRAGQLEKAKNFINEMPLAPDPVVWRILLGACK-THGNV 828

Query: 519 EIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCS 574
            +AE A K+L ELDP N+  +++L NIYA++ R  +   +R  M    VRK P CS
Sbjct: 829 AVAEVATKKLSELDPSNSGDYMLLSNIYASADRWSDALNVRQWMADTAVRKSPACS 884



 Score =  207 bits (526), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 112/325 (34%), Positives = 178/325 (54%), Gaps = 2/325 (0%)

Query: 261 VPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLF 320
           +P+++ +SW  +I G+   G++  A  LF  MP R+ V+WT +I G  +  L+ EA  LF
Sbjct: 1   MPMKNVVSWNVVITGFAGWGEIEYARLLFDQMPCRNVVSWTGLIDGYTRACLYAEAVALF 60

Query: 321 MEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKC 380
             M A G+ P   T   +  A      I +G  +H   +K    SD  + N LI +YAK 
Sbjct: 61  RHMMAGGISPSEITVLAVVPAISNLGGILMGEMLHGYCVKKGIMSDARVGNSLIDLYAKI 120

Query: 381 GVIDNAYNIFSNMVSR-DLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGI 439
           G + N+  +F  M+ R +LVSW S++ GF+ HGL+ E L++F  M  +G  PN +TFL +
Sbjct: 121 GSVQNSLKVFDEMLDRRNLVSWTSIISGFAMHGLSVEALELFAEMRRAGIRPNRITFLSV 180

Query: 440 LSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEP 499
           ++ACSH GLV +G   F +M   Y I P  +H+  +I++LGRAG++ EAE+ +  LP E 
Sbjct: 181 INACSHGGLVEQGLAFFKSMVYEYNIDPEIKHFGCIIDMLGRAGRLCEAEQIIEGLPVEV 240

Query: 500 DHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLR 559
           +  +W  LLG C    G  E+ + A K + +L+  +     VL N+    GR  +  + R
Sbjct: 241 NVIVWRILLGCCSK-YGEVEMGKRAIKMISDLERESGGDFAVLSNVLNELGRFSDAEQAR 299

Query: 560 MDMGLKGVRKVPGCSWLMRNGGIQM 584
             +  + + KVPG + ++    + M
Sbjct: 300 KLLDERKIVKVPGLALVVTRSFVMM 324



 Score =  128 bits (322), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 116/497 (23%), Positives = 224/497 (45%), Gaps = 63/497 (12%)

Query: 16  SSITKYSKRGFIDEAKALF-QLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPER--- 71
           S I  Y+K G +  +  +F +++ +RN+VS+ +++SGF  +G   EA  LF EM      
Sbjct: 112 SLIDLYAKIGSVQNSLKVFDEMLDRRNLVSWTSIISGFAMHGLSVEALELFAEMRRAGIR 171

Query: 72  -NVVSWTAMICGLADAGRVCEARKLFEEM-------PERNVVSWNSMVVGLIRNGELNEA 123
            N +++ ++I   +  G V +    F+ M       PE  +  +  ++  L R G L EA
Sbjct: 172 PNRITFLSVINACSHGGLVEQGLAFFKSMVYEYNIDPE--IKHFGCIIDMLGRAGRLCEA 229

Query: 124 RKVFNSMPIK-NVISWNAMI---AGYVECCMMGEAIVLFEEMEER---NVVTWTSMISGY 176
            ++   +P++ NVI W  ++   + Y E  M   AI +  ++E     +    +++++  
Sbjct: 230 EQIIEGLPVEVNVIVWRILLGCCSKYGEVEMGKRAIKMISDLERESGGDFAVLSNVLNEL 289

Query: 177 CRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQ 236
            R  + E+   L   +  + +V     + G A       S ++   +K +  +     + 
Sbjct: 290 GRFSDAEQARKL---LDERKIVK----VPGLAL--VVTRSFVMMEAVKKLHAHLVVSGLH 340

Query: 237 SCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRD 296
           +C   ++  IR   L+++  +F                          A+ +F  +    
Sbjct: 341 NCQYAMSKVIRSYALQQSDLVF--------------------------AHKVFEQIESPT 374

Query: 297 AVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHC 356
              W  ++ GL Q++   +A   + + +  G+ P N TF  +  A   T     G Q+H 
Sbjct: 375 TFLWNTLLRGLAQSDAPKDAIVFYKKAQEKGMKPDNMTFPFVLKACAKTYAPKEGEQMHS 434

Query: 357 VLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANE 416
            ++K     D+ + N LI +YA CG +  A +IF  M+ +D+VSWNS++ G+S      E
Sbjct: 435 HVIKLGFLLDIFVSNSLIHLYAACGDLVCARSIFDEMLVKDVVSWNSLIGGYSQRNRFKE 494

Query: 417 TLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFD-VYKIQPGPEHYV-- 473
            L +FE M       + VT + ++SAC+H G     W + + M   + +     + Y+  
Sbjct: 495 VLALFELMQAEEVQADKVTMVKVISACTHLG----DWSMADCMVRYIERNHIEVDVYLGN 550

Query: 474 SMINLLGRAGKIKEAEE 490
           ++I+   R G+++ AE+
Sbjct: 551 TLIDYYCRIGQLQSAEK 567



 Score =  121 bits (304), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 109/410 (26%), Positives = 179/410 (43%), Gaps = 46/410 (11%)

Query: 16  SSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNV-- 73
           S I  Y+  G +  A+++F  M  ++VVS+N+++ G+ Q  R  E   LFE M    V  
Sbjct: 450 SLIHLYAACGDLVCARSIFDEMLVKDVVSWNSLIGGYSQRNRFKEVLALFELMQAEEVQA 509

Query: 74  --VSWTAMICGLADAGR----VCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVF 127
             V+   +I      G      C  R +     E +V   N+++    R G+L  A KVF
Sbjct: 510 DKVTMVKVISACTHLGDWSMADCMVRYIERNHIEVDVYLGNTLIDYYCRIGQLQSAEKVF 569

Query: 128 NSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYC 187
           + M  KN ++ NAMI  Y +   +  A  +F+++  +++++W+SMI  Y +A    +   
Sbjct: 570 SQMKDKNTVTLNAMIHAYAKGGNLVSAKKIFDQIPNKDLISWSSMICAYSQASHFSDSLE 629

Query: 188 LFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIR 247
           LFR+M R  V     +I           S+L      G  D G           I+ Y+R
Sbjct: 630 LFRQMQRAKVKPDAVVIA----------SVLSACAHLGALDLGK---------WIHDYVR 670

Query: 248 FGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGL 307
              ++            D I   S+ID +   G +  A  +F  M ++D ++W ++I GL
Sbjct: 671 RNNIKT-----------DTIMENSLIDMFAKCGCMQEALQVFTEMEEKDTLSWNSIILGL 719

Query: 308 VQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQ--IHCVLMKT--ES 363
             N    EA  +F  M   G  P   TF    G   A AN  L ++   H   MKT    
Sbjct: 720 ANNGFEDEALNIFYSMLTEGPRPNEVTF---LGVLIACANKRLVQEGLDHFERMKTVHNL 776

Query: 364 ESDLILENCLISMYAKCGVIDNAYNIFSNM-VSRDLVSWNSMVMGFSHHG 412
           E  +    C++ + ++ G ++ A N  + M ++ D V W  ++     HG
Sbjct: 777 EPQMKHYGCVVGILSRAGQLEKAKNFINEMPLAPDPVVWRILLGACKTHG 826



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 80/308 (25%), Positives = 156/308 (50%), Gaps = 17/308 (5%)

Query: 3   ERNHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEAR 62
           ERNH +  V    + I  Y + G +  A+ +F  M  +N V+ NAM+  + + G L  A+
Sbjct: 538 ERNHIEVDVYLGNTLIDYYCRIGQLQSAEKVFSQMKDKNTVTLNAMIHAYAKGGNLVSAK 597

Query: 63  RLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRN----- 117
           ++F+++P ++++SW++MIC  + A    ++ +LF +M +R  V  +++V+  + +     
Sbjct: 598 KIFDQIPNKDLISWSSMICAYSQASHFSDSLELFRQM-QRAKVKPDAVVIASVLSACAHL 656

Query: 118 GELNEARKVFNSMPIKNV----ISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMI 173
           G L+  + + + +   N+    I  N++I  + +C  M EA+ +F EMEE++ ++W S+I
Sbjct: 657 GALDLGKWIHDYVRRNNIKTDTIMENSLIDMFAKCGCMQEALQVFTEMEEKDTLSWNSII 716

Query: 174 SGYCRAGEVEEGYCLFRRM----PRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDN 229
            G    G  +E   +F  M    PR N V++  ++   A     +E L  F  MK + + 
Sbjct: 717 LGLANNGFEDEALNIFYSMLTEGPRPNEVTFLGVLIACANKRLVQEGLDHFERMKTVHNL 776

Query: 230 GNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVR-DEISWTSMIDGYLSVGQVSNAYYL 288
                   C  ++    R G+LE+A+N  + +P+  D + W  ++    + G V+ A   
Sbjct: 777 EPQMKHYGC--VVGILSRAGQLEKAKNFINEMPLAPDPVVWRILLGACKTHGNVAVAEVA 834

Query: 289 FHNMPDRD 296
              + + D
Sbjct: 835 TKKLSELD 842



 Score =  112 bits (281), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 117/440 (26%), Positives = 200/440 (45%), Gaps = 51/440 (11%)

Query: 37  MPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLF 96
           MP +NVVS+N +++GF   G +  AR LF++MP RNVVSWT +I G   A    EA  LF
Sbjct: 1   MPMKNVVSWNVVITGFAGWGEIEYARLLFDQMPCRNVVSWTGLIDGYTRACLYAEAVALF 60

Query: 97  EEM-------PERNVVSWNSMV--VGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVE 147
             M        E  V++    +  +G I  GE+     V   + + +    N++I  Y +
Sbjct: 61  RHMMAGGISPSEITVLAVVPAISNLGGILMGEMLHGYCVKKGI-MSDARVGNSLIDLYAK 119

Query: 148 CCMMGEAIVLFEEM-EERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRK----NVVSWTA 202
              +  ++ +F+EM + RN+V+WTS+ISG+   G   E   LF  M R     N +++ +
Sbjct: 120 IGSVQNSLKVFDEMLDRRNLVSWTSIISGFAMHGLSVEALELFAEMRRAGIRPNRITFLS 179

Query: 203 MIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVP 262
           +I   +  G  ++ L  F  M  + +   +  ++    +I+   R GRL EA+ + + +P
Sbjct: 180 VINACSHGGLVEQGLAFFKSM--VYEYNIDPEIKHFGCIIDMLGRAGRLCEAEQIIEGLP 237

Query: 263 VR-DEISWTSMIDGYLSVGQVSNAYYLFHNMPD--RDAVAWTAMISGLVQNEL-----FV 314
           V  + I W  ++      G+V         + D  R++    A++S  V NEL       
Sbjct: 238 VEVNVIVWRILLGCCSKYGEVEMGKRAIKMISDLERESGGDFAVLSN-VLNELGRFSDAE 296

Query: 315 EATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLI 374
           +A  L  E +   VP L    +  F    A       +++H  L+ +       L NC  
Sbjct: 297 QARKLLDERKIVKVPGLALVVTRSFVMMEAV------KKLHAHLVVSG------LHNC-- 342

Query: 375 SMYAKCGVIDN----------AYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESM 424
             YA   VI +          A+ +F  + S     WN+++ G +      + +  ++  
Sbjct: 343 -QYAMSKVIRSYALQQSDLVFAHKVFEQIESPTTFLWNTLLRGLAQSDAPKDAIVFYKKA 401

Query: 425 LESGTHPNSVTFLGILSACS 444
            E G  P+++TF  +L AC+
Sbjct: 402 QEKGMKPDNMTFPFVLKACA 421


>gi|357133320|ref|XP_003568274.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Brachypodium distachyon]
          Length = 919

 Score =  281 bits (718), Expect = 9e-73,   Method: Compositional matrix adjust.
 Identities = 182/620 (29%), Positives = 302/620 (48%), Gaps = 55/620 (8%)

Query: 30  AKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMP----ERNVVSWTAMICGLAD 85
           A  +F  M   + V++N ++SG  Q G    A  +F+EM       + V+  +++   + 
Sbjct: 197 ADRVFCDMLYCDSVTFNTLISGHAQCGHGDRALGIFDEMQLSGLSPDSVTIASLLAACSA 256

Query: 86  AGRVCEARKLFEEMPER----NVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAM 141
            G + + ++L   + +     + +   S++   +++G++ EA ++F+S    NV+ WN M
Sbjct: 257 VGDLRKGKQLHSYLLKAGMSLDYIMEGSLLDLYVKSGDIEEALQIFDSGDRTNVVLWNLM 316

Query: 142 IAGYVECCMMGEAIVLFEEM----EERNVVTWTSM------------------------- 172
           +  Y +   + ++  +F  M       N  T+  M                         
Sbjct: 317 LVAYGQIDDLAKSFDIFYRMLAAGVRPNKFTYPCMLRTCTHTGEIGLGEQIHSLTIKNGF 376

Query: 173 -----ISG-----YCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIE 222
                +SG     Y + G +++   +   +  K+VVSWT+MI G+  + F KE+L  F E
Sbjct: 377 QSDMYVSGVLIDMYSKYGWLDKAQRILDMIEEKDVVSWTSMIAGYVQHEFCKEALETFKE 436

Query: 223 MKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVR----DEISWTSMIDGYLS 278
           M+      +N  + S  S   G      + +   +   V V     D   W  ++  Y  
Sbjct: 437 MQACGIWPDNIGLASAISACAG---IKAVHQGSQIHARVYVSGYSADVSIWNGLVYLYAR 493

Query: 279 VGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVL 338
            G    A+  F  +  ++ + W  +ISG  Q+ L+ EA  +FM+M   G      TF   
Sbjct: 494 CGISKEAFSSFEAIEHKEGITWNGLISGFAQSGLYEEALKVFMKMDQAGAKYNVFTFVSS 553

Query: 339 FGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDL 398
             A+   A+I  G+QIH  ++KT   S+  + N LIS+Y KCG I++A   F  M  R+ 
Sbjct: 554 ISASANLADIKQGKQIHARVIKTGYTSETEISNALISLYGKCGSIEDAKMDFFEMTKRNE 613

Query: 399 VSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNA 458
           VSWN+++   S HG   E L +F+ M + G  P+ VTF+G+L+ACSH GLV  G   F +
Sbjct: 614 VSWNTIITCCSQHGRGLEALDLFDQMKQQGLKPSDVTFVGVLTACSHVGLVEEGLCYFKS 673

Query: 459 MFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNA 518
           M + + I P P+HY  ++++LGRAG++  A+ FV  +P   D  +W  LL AC     N 
Sbjct: 674 MSNEHGIHPRPDHYACVVDILGRAGQLDRAKRFVEEMPIPADSMVWRTLLSACKV-HKNL 732

Query: 519 EIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMR 578
           EI E AAK LLEL+P ++ ++V+L N YA +G+     ++R  M  +GVRK PG SW+  
Sbjct: 733 EIGEFAAKHLLELEPHDSASYVLLSNAYAVTGKWASRDQIRKIMKDRGVRKEPGRSWIEV 792

Query: 579 NGGIQMFLSGDKIPAQVAEI 598
              +  F  GD++     +I
Sbjct: 793 KNVVHAFFVGDRLHPLADQI 812



 Score =  164 bits (416), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 138/575 (24%), Positives = 247/575 (42%), Gaps = 128/575 (22%)

Query: 6   HPKSLVVHLTSS-------ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRL 58
           H K+++  L+         I  Y+K+GF+  A+ +F+ +  R+ VS+ A+LSG+ QNG  
Sbjct: 65  HAKAIICGLSGYRIIGNLLIDLYAKKGFVRRARRVFEELSVRDNVSWVAVLSGYAQNGLG 124

Query: 59  SEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFE-------EMPERNVVS----W 107
            EA RL+ EM    VV    ++  +  A   C   +LF+       ++ ++   S     
Sbjct: 125 EEAVRLYREMHRSGVVPTPYVLSSILSA---CTKTELFQLGRLIHVQVYKQGFFSETFVG 181

Query: 108 NSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEME----E 163
           N+++   +R      A +VF  M   + +++N +I+G+ +C     A+ +F+EM+     
Sbjct: 182 NALISLYLRCRSFRLADRVFCDMLYCDSVTFNTLISGHAQCGHGDRALGIFDEMQLSGLS 241

Query: 164 RNVVTWTSMISG-----------------------------------YCRAGEVEEGYCL 188
            + VT  S+++                                    Y ++G++EE   +
Sbjct: 242 PDSVTIASLLAACSAVGDLRKGKQLHSYLLKAGMSLDYIMEGSLLDLYVKSGDIEEALQI 301

Query: 189 FRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNN----CNVQSCNS---- 240
           F    R NVV W  M+  +       +S  +F  M       N     C +++C      
Sbjct: 302 FDSGDRTNVVLWNLMLVAYGQIDDLAKSFDIFYRMLAAGVRPNKFTYPCMLRTCTHTGEI 361

Query: 241 ------------------------MINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGY 276
                                   +I+ Y ++G L++AQ + D +  +D +SWTSMI GY
Sbjct: 362 GLGEQIHSLTIKNGFQSDMYVSGVLIDMYSKYGWLDKAQRILDMIEEKDVVSWTSMIAGY 421

Query: 277 LSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFS 336
                                          VQ+E   EA   F EM+A G+ P N   +
Sbjct: 422 -------------------------------VQHEFCKEALETFKEMQACGIWPDNIGLA 450

Query: 337 VLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSR 396
               A      +  G QIH  +  +   +D+ + N L+ +YA+CG+   A++ F  +  +
Sbjct: 451 SAISACAGIKAVHQGSQIHARVYVSGYSADVSIWNGLVYLYARCGISKEAFSSFEAIEHK 510

Query: 397 DLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELF 456
           + ++WN ++ GF+  GL  E LKVF  M ++G   N  TF+  +SA ++   + +G ++ 
Sbjct: 511 EGITWNGLISGFAQSGLYEEALKVFMKMDQAGAKYNVFTFVSSISASANLADIKQGKQIH 570

Query: 457 NAMFDVYKIQPGPEHYVS--MINLLGRAGKIKEAE 489
                V K     E  +S  +I+L G+ G I++A+
Sbjct: 571 AR---VIKTGYTSETEISNALISLYGKCGSIEDAK 602



 Score =  115 bits (288), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 88/345 (25%), Positives = 159/345 (46%), Gaps = 13/345 (3%)

Query: 172 MISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEM--KGICDN 229
           +I  Y + G V     +F  +  ++ VSW A++ G+A NG  +E++ L+ EM   G+   
Sbjct: 83  LIDLYAKKGFVRRARRVFEELSVRDNVSWVAVLSGYAQNGLGEEAVRLYREMHRSGVVPT 142

Query: 230 GNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLF 289
               +            + GRL   Q ++      +     ++I  YL       A  +F
Sbjct: 143 PYVLSSILSACTKTELFQLGRLIHVQ-VYKQGFFSETFVGNALISLYLRCRSFRLADRVF 201

Query: 290 HNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANID 349
            +M   D+V +  +ISG  Q      A  +F EM+  G+ P + T + L  A  A  ++ 
Sbjct: 202 CDMLYCDSVTFNTLISGHAQCGHGDRALGIFDEMQLSGLSPDSVTIASLLAACSAVGDLR 261

Query: 350 LGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFS 409
            G+Q+H  L+K     D I+E  L+ +Y K G I+ A  IF +    ++V WN M++ + 
Sbjct: 262 KGKQLHSYLLKAGMSLDYIMEGSLLDLYVKSGDIEEALQIFDSGDRTNVVLWNLMLVAYG 321

Query: 410 HHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPG- 468
                 ++  +F  ML +G  PN  T+  +L  C+H G +  G ++ +       I+ G 
Sbjct: 322 QIDDLAKSFDIFYRMLAAGVRPNKFTYPCMLRTCTHTGEIGLGEQIHS-----LTIKNGF 376

Query: 469 -PEHYVS--MINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGA 510
             + YVS  +I++  + G + +A+  +L +  E D   W +++  
Sbjct: 377 QSDMYVSGVLIDMYSKYGWLDKAQR-ILDMIEEKDVVSWTSMIAG 420



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 61/241 (25%), Positives = 107/241 (44%), Gaps = 29/241 (12%)

Query: 368 ILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLES 427
           I+ N LI +YAK G +  A  +F  +  RD VSW +++ G++ +GL  E ++++  M  S
Sbjct: 78  IIGNLLIDLYAKKGFVRRARRVFEELSVRDNVSWVAVLSGYAQNGLGEEAVRLYREMHRS 137

Query: 428 GTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYV--SMINLLGRAGKI 485
           G  P       ILSAC+   L   G  +      VYK     E +V  ++I+L  R    
Sbjct: 138 GVVPTPYVLSSILSACTKTELFQLGRLIH---VQVYKQGFFSETFVGNALISLYLRCRSF 194

Query: 486 KEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLN----APAHVV 541
           + A+     + +  D   +  L+       G+A+   H  + L   D +     +P  V 
Sbjct: 195 RLADRVFCDMLY-CDSVTFNTLI------SGHAQCG-HGDRALGIFDEMQLSGLSPDSVT 246

Query: 542 LCNIYAA--------SGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGI----QMFLSGD 589
           + ++ AA         G+ +  + L+  M L  + +       +++G I    Q+F SGD
Sbjct: 247 IASLLAACSAVGDLRKGKQLHSYLLKAGMSLDYIMEGSLLDLYVKSGDIEEALQIFDSGD 306

Query: 590 K 590
           +
Sbjct: 307 R 307


>gi|224066751|ref|XP_002302197.1| predicted protein [Populus trichocarpa]
 gi|222843923|gb|EEE81470.1| predicted protein [Populus trichocarpa]
          Length = 440

 Score =  281 bits (718), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 158/440 (35%), Positives = 237/440 (53%), Gaps = 17/440 (3%)

Query: 145 YVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMI 204
           Y +C  + ++  LFE M ERNVVTW +MISGY + G+++    LF +M  +N VSW  MI
Sbjct: 2   YAKCGDIPDSRKLFEYMPERNVVTWNAMISGYGKNGDMKSASVLFDKMSTRNAVSWIEMI 61

Query: 205 GGFAWNGFHKESLLLF----IEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDT 260
            GFA +G    +   F     E+K         NV +   MI+GY   G +E A+ LF+ 
Sbjct: 62  DGFARSGDMVAARRTFNEVPFELK---------NVVTWTVMIDGYASKGEMEAARLLFED 112

Query: 261 VPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLF 320
           +P R+   W+SMI GY  +G V  A  +F  +P R+ V W ++I G  QN    EA   F
Sbjct: 113 MPQRNFFVWSSMISGYCKIGNVKEARAIFDRVPVRNLVNWNSLICGYSQNGFCEEALDAF 172

Query: 321 MEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKC 380
            +M+  G  P   T   +  A    + +D+G+ +H ++     + +  + N L+ MYAKC
Sbjct: 173 GKMQNEGYEPDEVTVVGVLSACAQLSLLDVGKDVHKMICAKGMKLNEFVVNALVDMYAKC 232

Query: 381 GVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGIL 440
           G +  A  IF  M +++   WNSM+ GF+ HG   E L+ F  M ES   P+ +TFL +L
Sbjct: 233 GDLTGARLIFERMTNKNNACWNSMISGFAVHGKTKEALEFFGRMEESNEKPDEITFLSVL 292

Query: 441 SACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPD 500
           SAC H G V  G E+F+ M + Y +    +HY  +++LLGRAG+I++A   +  +P +P+
Sbjct: 293 SACVHGGFVEVGLEIFSKM-ERYGLSASIKHYGCLVDLLGRAGRIQDAYHLIKSMPMKPN 351

Query: 501 HRIWGALLGACGFCEGN---AEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHK 557
             +WGA LGAC     N    ++ E        +D  N P + +L NIYA SG   +  +
Sbjct: 352 DTVWGAFLGACRIHMDNDMVEQVVEDVCTSDSSVDSGNDPHYALLLNIYAGSGSWEKAGR 411

Query: 558 LRMDMGLKGVRKVPGCSWLM 577
           + M M  +G++K  G S LM
Sbjct: 412 VSMVMADRGLQKTSGRSSLM 431



 Score =  202 bits (514), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 125/416 (30%), Positives = 213/416 (51%), Gaps = 21/416 (5%)

Query: 52  FLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMV 111
           + + G + ++R+LFE MPERNVV+W AMI G    G +  A  LF++M  RN VSW  M+
Sbjct: 2   YAKCGDIPDSRKLFEYMPERNVVTWNAMISGYGKNGDMKSASVLFDKMSTRNAVSWIEMI 61

Query: 112 VGLIRNGELNEARKVFNSMP--IKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTW 169
            G  R+G++  AR+ FN +P  +KNV++W  MI GY     M  A +LFE+M +RN   W
Sbjct: 62  DGFARSGDMVAARRTFNEVPFELKNVVTWTVMIDGYASKGEMEAARLLFEDMPQRNFFVW 121

Query: 170 TSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDN 229
           +SMISGYC+ G V+E   +F R+P +N+V+W ++I G++ NGF +E+L  F +M+   + 
Sbjct: 122 SSMISGYCKIGNVKEARAIFDRVPVRNLVNWNSLICGYSQNGFCEEALDAFGKMQ---NE 178

Query: 230 GNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVR----DEISWTSMIDGYLSVGQVSNA 285
           G   +  +   +++   +   L+  +++   +  +    +E    +++D Y   G ++ A
Sbjct: 179 GYEPDEVTVVGVLSACAQLSLLDVGKDVHKMICAKGMKLNEFVVNALVDMYAKCGDLTGA 238

Query: 286 YYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGAT 345
             +F  M +++   W +MISG   +    EA   F  M      P   TF  +  A    
Sbjct: 239 RLIFERMTNKNNACWNSMISGFAVHGKTKEALEFFGRMEESNEKPDEITFLSVLSACVHG 298

Query: 346 ANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSR--DLVSWNS 403
             +++G +I   + +    + +    CL+ +  + G I +AY++  +M  +  D V W +
Sbjct: 299 GFVEVGLEIFSKMERYGLSASIKHYGCLVDLLGRAGRIQDAYHLIKSMPMKPNDTV-WGA 357

Query: 404 MVMGFSHHGLANETLKVFE------SMLESGTHPNSVTFLGILSAC---SHAGLVS 450
            +     H   +   +V E      S ++SG  P+    L I +       AG VS
Sbjct: 358 FLGACRIHMDNDMVEQVVEDVCTSDSSVDSGNDPHYALLLNIYAGSGSWEKAGRVS 413



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 102/345 (29%), Positives = 169/345 (48%), Gaps = 51/345 (14%)

Query: 7   PKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFE 66
           P+  VV   + I+ Y K G +  A  LF  M  RN VS+  M+ GF ++G +  ARR F 
Sbjct: 19  PERNVVTWNAMISGYGKNGDMKSASVLFDKMSTRNAVSWIEMIDGFARSGDMVAARRTFN 78

Query: 67  EMP--ERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEAR 124
           E+P   +NVV+WT MI G A  G +  AR LFE+MP+RN   W+SM+ G  + G + EAR
Sbjct: 79  EVPFELKNVVTWTVMIDGYASKGEMEAARLLFEDMPQRNFFVWSSMISGYCKIGNVKEAR 138

Query: 125 KVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEME----ERNVVTWTSMISG----- 175
            +F+ +P++N+++WN++I GY +     EA+  F +M+    E + VT   ++S      
Sbjct: 139 AIFDRVPVRNLVNWNSLICGYSQNGFCEEALDAFGKMQNEGYEPDEVTVVGVLSACAQLS 198

Query: 176 ------------------------------YCRAGEVEEGYCLFRRMPRKNVVSWTAMIG 205
                                         Y + G++     +F RM  KN   W +MI 
Sbjct: 199 LLDVGKDVHKMICAKGMKLNEFVVNALVDMYAKCGDLTGARLIFERMTNKNNACWNSMIS 258

Query: 206 GFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRD 265
           GFA +G  KE+L  F  M+   ++    +  +  S+++  +  G +E    +F  +  R 
Sbjct: 259 GFAVHGKTKEALEFFGRME---ESNEKPDEITFLSVLSACVHGGFVEVGLEIFSKME-RY 314

Query: 266 EIS-----WTSMIDGYLSVGQVSNAYYLFHNMPDR-DAVAWTAMI 304
            +S     +  ++D     G++ +AY+L  +MP + +   W A +
Sbjct: 315 GLSASIKHYGCLVDLLGRAGRIQDAYHLIKSMPMKPNDTVWGAFL 359



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 36/155 (23%), Positives = 78/155 (50%), Gaps = 13/155 (8%)

Query: 376 MYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVT 435
           MYAKCG I ++  +F  M  R++V+WN+M+ G+  +G       +F+ M    +  N+V+
Sbjct: 1   MYAKCGDIPDSRKLFEYMPERNVVTWNAMISGYGKNGDMKSASVLFDKM----STRNAVS 56

Query: 436 FLGILSACSHAGLVSRGWELFNAM-FDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLR 494
           ++ ++   + +G +      FN + F++  +      +  MI+     G+++ A      
Sbjct: 57  WIEMIDGFARSGDMVAARRTFNEVPFELKNVVT----WTVMIDGYASKGEMEAARLLFED 112

Query: 495 LPFEPDHRIWGALLGACGFCE-GNAEIAEHAAKRL 528
           +P + +  +W +++   G+C+ GN + A     R+
Sbjct: 113 MP-QRNFFVWSSMIS--GYCKIGNVKEARAIFDRV 144


>gi|224103443|ref|XP_002313059.1| predicted protein [Populus trichocarpa]
 gi|222849467|gb|EEE87014.1| predicted protein [Populus trichocarpa]
          Length = 677

 Score =  281 bits (718), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 193/634 (30%), Positives = 320/634 (50%), Gaps = 56/634 (8%)

Query: 14  LTSS--ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPER 71
           LTS+  I  YSK   I+EA+ LF  MP+RN+ S+N ++S  +++  L++A+ +F+    R
Sbjct: 24  LTSNQLIHLYSKHCLINEAQKLFDEMPRRNIYSWNTIISAHVKSQNLAQAKSIFDSASVR 83

Query: 72  NVVSWTAMICGLADA-GRVCEARKLFEEMPER------NVVSWNSMVVGLIRNGELNEAR 124
           ++V++ +M+ G AD  G    A +LF EM  +      +  +  SMV    +   L    
Sbjct: 84  DLVTYNSMLSGYADVDGYERNALELFVEMHSKSNDIGVDDFTVTSMVKLFAKLSNLCYGM 143

Query: 125 KVFNSMPI----KNVISWNAMIAGYVECCMMGEAIVLFEEMEER---NVVTWTSMISGYC 177
           ++ + M      ++    +++I  Y +C    EA  +F   E+    ++V+  +M++  C
Sbjct: 144 QLHSYMVKTGNDRSGFVVSSLIDMYSKCGCYKEACGIFRGSEKEGGIDLVSKNAMVAACC 203

Query: 178 RAGEVEEGYCLF-RRMPRKNVVSWTAMIGGFAWNGFHKESLLLFI--------------- 221
           R GE+E    LF R     + VSW  +I G+  NG+  E+L LF+               
Sbjct: 204 REGEMEMALGLFWRENELNDSVSWNTLISGYVQNGYPLEALKLFVCMGENGVKWNEHTFG 263

Query: 222 ----------------EMKG-ICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVR 264
                           EM   I  NG + +    + +++ Y + G ++ A++   T    
Sbjct: 264 SVLSACADLRNLKIGKEMHAWILKNGLSSSAFVESGIVDVYCKGGNMKYAESFHLTSGTG 323

Query: 265 DEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLV---QNELFVEATYLFM 321
              S TSMI GY S G +  A  LF ++ +++++ W A+  G V   Q E   E   L++
Sbjct: 324 SSFSITSMIVGYSSQGNMVEACRLFDSLEEKNSIVWAALFGGYVKLNQCEAIFELLCLYI 383

Query: 322 EMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCG 381
              A  +P      S L       A +  G+QIH  + +   E D+ +   +I MY+KCG
Sbjct: 384 AKEA-AIPDALILVSAL-SVCAFQAALGPGKQIHGYVYRMGIEMDIKMTTAMIDMYSKCG 441

Query: 382 VIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILS 441
            I  A  +F  ++ RDLV +N MV G++HHG   + + +F+ MLE G  P+++TF+ +LS
Sbjct: 442 SIPYAEKMFLKVIERDLVLYNVMVAGYAHHGYEIKAINLFQEMLERGVGPDAITFVALLS 501

Query: 442 ACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFE-PD 500
           AC H GLV  G   F +M + Y I P  +HY  MI+L GRA ++++   F+ R+P E  D
Sbjct: 502 ACRHRGLVDLGERTFYSMTEDYLILPETDHYACMIDLYGRASQLEKMVLFMQRIPIEYQD 561

Query: 501 HRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRM 560
             + GA   AC     N E+A  A ++LL+++  +   +V L N YAA G   E  ++R 
Sbjct: 562 AAVAGAFFNACRL-NKNTELAREAEEKLLKIEGDSGARYVQLANAYAAEGNWAEMGRIRK 620

Query: 561 DMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQ 594
           +M  K  +K  GCSW+  + G+  F+SGD+  ++
Sbjct: 621 EMRGKEAKKFAGCSWVYLDNGVHTFISGDRTHSK 654



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 82/304 (26%), Positives = 136/304 (44%), Gaps = 53/304 (17%)

Query: 235 VQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPD 294
           + + N +I+ Y +   + EAQ LFD +P R+  SW ++I  ++    ++ A  +F +   
Sbjct: 23  ILTSNQLIHLYSKHCLINEAQKLFDEMPRRNIYSWNTIISAHVKSQNLAQAKSIFDSASV 82

Query: 295 RDAVAWTAMISGLVQNELFVE-ATYLFMEMRAH----GVPPLNATFSVLFGAAGATANID 349
           RD V + +M+SG    + +   A  LF+EM +     GV     T  V   A    +N+ 
Sbjct: 83  RDLVTYNSMLSGYADVDGYERNALELFVEMHSKSNDIGVDDFTVTSMVKLFA--KLSNLC 140

Query: 350 LGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFS--------NMVSR----- 396
            G Q+H  ++KT ++    + + LI MY+KCG    A  IF         ++VS+     
Sbjct: 141 YGMQLHSYMVKTGNDRSGFVVSSLIDMYSKCGCYKEACGIFRGSEKEGGIDLVSKNAMVA 200

Query: 397 ----------------------DLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSV 434
                                 D VSWN+++ G+  +G   E LK+F  M E+G   N  
Sbjct: 201 ACCREGEMEMALGLFWRENELNDSVSWNTLISGYVQNGYPLEALKLFVCMGENGVKWNEH 260

Query: 435 TFLGILSACS-----HAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAE 489
           TF  +LSAC+       G     W L N +     ++ G      ++++  + G +K AE
Sbjct: 261 TFGSVLSACADLRNLKIGKEMHAWILKNGLSSSAFVESG------IVDVYCKGGNMKYAE 314

Query: 490 EFVL 493
            F L
Sbjct: 315 SFHL 318


>gi|357483509|ref|XP_003612041.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355513376|gb|AES94999.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 518

 Score =  280 bits (717), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 158/488 (32%), Positives = 260/488 (53%), Gaps = 11/488 (2%)

Query: 118 GELNEAR-KVFNSMPIKNVISWNAMIAGY--VECCMMGEAIVLFEEMEERNVVTWTSMIS 174
           GEL +   ++     I++ ++ + ++  Y  +E   +  A ++F+ +   N V W +MI 
Sbjct: 25  GELKQIHGQLLKKGTIRHKLTVSRLLTTYASMEFSNLTYARMVFDRISSPNTVMWNTMIR 84

Query: 175 GYCRAGEVEEGYCLFRRMPRK----NVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNG 230
            Y  + + EE   L+ +M       N  ++  ++   +      E+  + ++   I   G
Sbjct: 85  AYSNSNDPEEALLLYHQMLHHSIPHNAYTFPFLLKACSALSALAETHQIHVQ---IIKRG 141

Query: 231 NNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFH 290
               V + NS++  Y   G ++ A  LFD +P RD +SW +MIDGY+  G V  AY +F 
Sbjct: 142 FGSEVYATNSLLRVYAISGSIKSAHVLFDLLPSRDIVSWNTMIDGYIKCGNVEMAYKIFQ 201

Query: 291 NMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDL 350
            MP+++ ++WT+MI G V+  +  EA  L  +M   G+ P   T S    A      ++ 
Sbjct: 202 AMPEKNVISWTSMIVGFVRTGMHKEALCLLQQMLVAGIKPDKITLSCSLSACAGLGALEQ 261

Query: 351 GRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSH 410
           G+ IH  + K + + D +L   LI MY KCG +  A  +FS +  + + +W +++ GF+ 
Sbjct: 262 GKWIHTYIGKNKIKIDPVLGCALIDMYVKCGEMKKALLVFSKLEKKCVYTWTAIIGGFAV 321

Query: 411 HGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPE 470
           HG  +E L  F  M ++G  P S TF  +L+ACSH GLV  G  LF +M   Y ++P  E
Sbjct: 322 HGKGSEALDWFTQMQKAGIKPTSFTFTAVLTACSHTGLVEEGKSLFESMSTFYNMKPVME 381

Query: 471 HYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLE 530
           HY  M++LLGRAG +KEA+EFV  +P +P+  IWG+LL AC     + E+ +   K L+E
Sbjct: 382 HYGCMVDLLGRAGFLKEAKEFVESMPIKPNAAIWGSLLNACHL-HKHLELGKEIGKFLIE 440

Query: 531 LDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDK 590
           LDP +   ++ L +I+AA+G   E  ++R  +  KG+  +PGCS +  NG    F +G +
Sbjct: 441 LDPEHDGRYIHLASIHAAAGEWDEASQVRSHIKNKGLLNLPGCSTITLNGVAHEFFAGAE 500

Query: 591 IPAQVAEI 598
               V E+
Sbjct: 501 PHPHVREM 508



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 89/364 (24%), Positives = 161/364 (44%), Gaps = 58/364 (15%)

Query: 92  ARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSM------------PI------- 132
           AR +F+ +   N V WN+M+     + +  EA  +++ M            P        
Sbjct: 64  ARMVFDRISSPNTVMWNTMIRAYSNSNDPEEALLLYHQMLHHSIPHNAYTFPFLLKACSA 123

Query: 133 --------------------KNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSM 172
                                 V + N+++  Y     +  A VLF+ +  R++V+W +M
Sbjct: 124 LSALAETHQIHVQIIKRGFGSEVYATNSLLRVYAISGSIKSAHVLFDLLPSRDIVSWNTM 183

Query: 173 ISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEM--KGICDNG 230
           I GY + G VE  Y +F+ MP KNV+SWT+MI GF   G HKE+L L  +M   GI  + 
Sbjct: 184 IDGYIKCGNVEMAYKIFQAMPEKNVISWTSMIVGFVRTGMHKEALCLLQQMLVAGIKPDK 243

Query: 231 N--NCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVR----DEISWTSMIDGYLSVGQVSN 284
              +C++ +C  +       G LE+ + +   +       D +   ++ID Y+  G++  
Sbjct: 244 ITLSCSLSACAGL-------GALEQGKWIHTYIGKNKIKIDPVLGCALIDMYVKCGEMKK 296

Query: 285 AYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGA 344
           A  +F  +  +    WTA+I G   +    EA   F +M+  G+ P + TF+ +  A   
Sbjct: 297 ALLVFSKLEKKCVYTWTAIIGGFAVHGKGSEALDWFTQMQKAGIKPTSFTFTAVLTACSH 356

Query: 345 TANIDLGRQIHCVLMKTESESDLILEN--CLISMYAKCGVIDNAYNIFSNM-VSRDLVSW 401
           T  ++ G+ +    M T      ++E+  C++ +  + G +  A     +M +  +   W
Sbjct: 357 TGLVEEGKSLF-ESMSTFYNMKPVMEHYGCMVDLLGRAGFLKEAKEFVESMPIKPNAAIW 415

Query: 402 NSMV 405
            S++
Sbjct: 416 GSLL 419



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 82/282 (29%), Positives = 150/282 (53%), Gaps = 24/282 (8%)

Query: 12  VHLTSSITK-YSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPE 70
           V+ T+S+ + Y+  G I  A  LF L+P R++VS+N M+ G+++ G +  A ++F+ MPE
Sbjct: 146 VYATNSLLRVYAISGSIKSAHVLFDLLPSRDIVSWNTMIDGYIKCGNVEMAYKIFQAMPE 205

Query: 71  RNVVSWTAMICGLADAGRVCEARKLFEEM------PERNVVSWN-SMVVGLIRNGELNEA 123
           +NV+SWT+MI G    G   EA  L ++M      P++  +S + S   GL   G L + 
Sbjct: 206 KNVISWTSMIVGFVRTGMHKEALCLLQQMLVAGIKPDKITLSCSLSACAGL---GALEQG 262

Query: 124 RKVF-----NSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCR 178
           + +      N + I  V+   A+I  YV+C  M +A+++F ++E++ V TWT++I G+  
Sbjct: 263 KWIHTYIGKNKIKIDPVLGC-ALIDMYVKCGEMKKALLVFSKLEKKCVYTWTAIIGGFAV 321

Query: 179 AGEVEEGYCLFRRMPRKNV----VSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCN 234
            G+  E    F +M +  +     ++TA++   +  G  +E   LF  M    +      
Sbjct: 322 HGKGSEALDWFTQMQKAGIKPTSFTFTAVLTACSHTGLVEEGKSLFESMSTFYNMKPVME 381

Query: 235 VQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEIS-WTSMIDG 275
              C  M++   R G L+EA+   +++P++   + W S+++ 
Sbjct: 382 HYGC--MVDLLGRAGFLKEAKEFVESMPIKPNAAIWGSLLNA 421



 Score =  115 bits (287), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 96/386 (24%), Positives = 177/386 (45%), Gaps = 53/386 (13%)

Query: 23  KRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICG 82
           KRGF  E            V + N++L  +  +G +  A  LF+ +P R++VSW  MI G
Sbjct: 139 KRGFGSE------------VYATNSLLRVYAISGSIKSAHVLFDLLPSRDIVSWNTMIDG 186

Query: 83  LADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMI 142
               G V  A K+F+ MPE+NV+SW SM+VG +R G   EA  +   M +  +      +
Sbjct: 187 YIKCGNVEMAYKIFQAMPEKNVISWTSMIVGFVRTGMHKEALCLLQQMLVAGIKPDKITL 246

Query: 143 AGYVECCM------MGEAIVLFEEMEERNV--VTWTSMISGYCRAGEVEEGYCLFRRMPR 194
           +  +  C        G+ I  +    +  +  V   ++I  Y + GE+++   +F ++ +
Sbjct: 247 SCSLSACAGLGALEQGKWIHTYIGKNKIKIDPVLGCALIDMYVKCGEMKKALLVFSKLEK 306

Query: 195 KNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEA 254
           K V +WTA+IGGFA +G   E+L  F +M+     G      +  +++      G +EE 
Sbjct: 307 KCVYTWTAIIGGFAVHGKGSEALDWFTQMQ---KAGIKPTSFTFTAVLTACSHTGLVEEG 363

Query: 255 QNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFV 314
           ++LF+++                           F+NM  +  +     +  L+    F+
Sbjct: 364 KSLFESMST-------------------------FYNM--KPVMEHYGCMVDLLGRAGFL 396

Query: 315 EATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLI 374
           +    F+E  +  + P  A +  L  A     +++LG++I   L++ + E D    + L 
Sbjct: 397 KEAKEFVE--SMPIKPNAAIWGSLLNACHLHKHLELGKEIGKFLIELDPEHDGRYIH-LA 453

Query: 375 SMYAKCGVIDNAYNIFSNMVSRDLVS 400
           S++A  G  D A  + S++ ++ L++
Sbjct: 454 SIHAAAGEWDEASQVRSHIKNKGLLN 479


>gi|108708629|gb|ABF96424.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
 gi|125586550|gb|EAZ27214.1| hypothetical protein OsJ_11153 [Oryza sativa Japonica Group]
          Length = 748

 Score =  280 bits (717), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 165/519 (31%), Positives = 281/519 (54%), Gaps = 18/519 (3%)

Query: 87  GRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYV 146
           GRV +A + F+EM  R+V +WN+M+ GL RN    EA  +F  M ++ V      ++  +
Sbjct: 118 GRVRDAYRAFDEMRHRDVPAWNAMLSGLCRNARAAEAVGLFGRMVMEGVAGDAVTVSSVL 177

Query: 147 E-CCMMGE-AIVLFEEME------ERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVV 198
             C ++G+ A+ L   +       +  +    +MI  Y + G +EE   +F  M  +++V
Sbjct: 178 PMCVLLGDRALALAMHLYAVKHGLDDELFVCNAMIDVYGKLGMLEEVRKVFDGMSSRDLV 237

Query: 199 SWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMIN-----GYIRFGRLEE 253
           +W ++I G    G    ++ +F  M+   D+G + +V +  S+ +     G I  GR   
Sbjct: 238 TWNSIISGHEQGGQVASAVEMFCGMR---DSGVSPDVLTLLSLASAIAQCGDICGGRSVH 294

Query: 254 AQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELF 313
              +     V D I+  +++D Y  + ++  A  +F +MP RDAV+W  +I+G +QN L 
Sbjct: 295 CYMVRRGWDVGDIIAGNAIVDMYAKLSKIEAAQRMFDSMPVRDAVSWNTLITGYMQNGLA 354

Query: 314 VEATYLFMEMRAH-GVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENC 372
            EA +++  M+ H G+ P+  TF  +  A      +  G ++H + +KT    D+ +  C
Sbjct: 355 SEAIHVYDHMQKHEGLKPIQGTFVSVLPAYSHLGALQQGTRMHALSIKTGLNLDVYVGTC 414

Query: 373 LISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPN 432
           +I +YAKCG +D A  +F     R    WN+++ G   HG   + L +F  M + G  P+
Sbjct: 415 VIDLYAKCGKLDEAMLLFEQTPRRSTGPWNAVISGVGVHGHGAKALSLFSQMQQEGISPD 474

Query: 433 SVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFV 492
            VTF+ +L+ACSHAGLV +G   FN M   Y I+P  +HY  M+++ GRAG++ +A +F+
Sbjct: 475 HVTFVSLLAACSHAGLVDQGRNFFNMMQTAYGIKPIAKHYACMVDMFGRAGQLDDAFDFI 534

Query: 493 LRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRH 552
             +P +PD  IWGALLGAC    GN E+ + A++ L ELDP N   +V++ N+YA  G+ 
Sbjct: 535 RNMPIKPDSAIWGALLGACRI-HGNVEMGKVASQNLFELDPKNVGYYVLMSNMYAKVGKW 593

Query: 553 VEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKI 591
               ++R  +  + ++K PG S +     + +F SG+++
Sbjct: 594 DGVDEVRSLVRRQNLQKTPGWSSIEVKRSVNVFYSGNQM 632



 Score =  132 bits (331), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 111/450 (24%), Positives = 196/450 (43%), Gaps = 58/450 (12%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNV---- 73
           +  Y + G + +A   F  M  R+V ++NAMLSG  +N R +EA  LF  M    V    
Sbjct: 111 VHAYLRFGRVRDAYRAFDEMRHRDVPAWNAMLSGLCRNARAAEAVGLFGRMVMEGVAGDA 170

Query: 74  --VSWTAMIC-------------------GLADAGRVC--------------EARKLFEE 98
             VS    +C                   GL D   VC              E RK+F+ 
Sbjct: 171 VTVSSVLPMCVLLGDRALALAMHLYAVKHGLDDELFVCNAMIDVYGKLGMLEEVRKVFDG 230

Query: 99  MPERNVVSWNSMVVGLIRNGELNEARKVF----NSMPIKNVISWNAMIAGYVECCMMGEA 154
           M  R++V+WNS++ G  + G++  A ++F    +S    +V++  ++ +   +C  +   
Sbjct: 231 MSSRDLVTWNSIISGHEQGGQVASAVEMFCGMRDSGVSPDVLTLLSLASAIAQCGDICGG 290

Query: 155 IVLFEEMEER-----NVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAW 209
             +   M  R     +++   +++  Y +  ++E    +F  MP ++ VSW  +I G+  
Sbjct: 291 RSVHCYMVRRGWDVGDIIAGNAIVDMYAKLSKIEAAQRMFDSMPVRDAVSWNTLITGYMQ 350

Query: 210 NGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNL----FDTVPVRD 265
           NG   E++ ++  M+     G      +  S++  Y   G L++   +      T    D
Sbjct: 351 NGLASEAIHVYDHMQK--HEGLKPIQGTFVSVLPAYSHLGALQQGTRMHALSIKTGLNLD 408

Query: 266 EISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRA 325
               T +ID Y   G++  A  LF   P R    W A+ISG+  +    +A  LF +M+ 
Sbjct: 409 VYVGTCVIDLYAKCGKLDEAMLLFEQTPRRSTGPWNAVISGVGVHGHGAKALSLFSQMQQ 468

Query: 326 HGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILEN--CLISMYAKCGVI 383
            G+ P + TF  L  A      +D GR     +M+T      I ++  C++ M+ + G +
Sbjct: 469 EGISPDHVTFVSLLAACSHAGLVDQGRNFFN-MMQTAYGIKPIAKHYACMVDMFGRAGQL 527

Query: 384 DNAYNIFSNM-VSRDLVSWNSMVMGFSHHG 412
           D+A++   NM +  D   W +++     HG
Sbjct: 528 DDAFDFIRNMPIKPDSAIWGALLGACRIHG 557



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 71/231 (30%), Positives = 110/231 (47%), Gaps = 20/231 (8%)

Query: 265 DEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMR 324
           D  +  +++  YL  G+V +AY  F  M  RD  AW AM+SGL +N    EA  LF  M 
Sbjct: 103 DAFASGALVHAYLRFGRVRDAYRAFDEMRHRDVPAWNAMLSGLCRNARAAEAVGLFGRMV 162

Query: 325 AHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVID 384
             GV     T S +        +  L   +H   +K   + +L + N +I +Y K G+++
Sbjct: 163 MEGVAGDAVTVSSVLPMCVLLGDRALALAMHLYAVKHGLDDELFVCNAMIDVYGKLGMLE 222

Query: 385 NAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACS 444
               +F  M SRDLV+WNS++ G    G     +++F  M +SG  P+ +T L + SA +
Sbjct: 223 EVRKVFDGMSSRDLVTWNSIISGHEQGGQVASAVEMFCGMRDSGVSPDVLTLLSLASAIA 282

Query: 445 HAG-----------LVSRGWEL-----FNAMFDVY----KIQPGPEHYVSM 475
             G           +V RGW++      NA+ D+Y    KI+     + SM
Sbjct: 283 QCGDICGGRSVHCYMVRRGWDVGDIIAGNAIVDMYAKLSKIEAAQRMFDSM 333



 Score = 68.6 bits (166), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 60/209 (28%), Positives = 102/209 (48%), Gaps = 24/209 (11%)

Query: 15  TSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNV- 73
           T  I  Y+K G +DEA  LF+  P+R+   +NA++SG   +G  ++A  LF +M +  + 
Sbjct: 413 TCVIDLYAKCGKLDEAMLLFEQTPRRSTGPWNAVISGVGVHGHGAKALSLFSQMQQEGIS 472

Query: 74  ---VSWTAMICGLADAGRVCEARKLFEEMPERNVVS-----WNSMVVGLIRNGELNEARK 125
              V++ +++   + AG V + R  F  M     +      +  MV    R G+L++A  
Sbjct: 473 PDHVTFVSLLAACSHAGLVDQGRNFFNMMQTAYGIKPIAKHYACMVDMFGRAGQLDDAFD 532

Query: 126 VFNSMPIK-NVISWNAM-----IAGYVECCMMGEAIV--LFEEMEERNVVTWTSMISGYC 177
              +MPIK +   W A+     I G VE   MG+     LF E++ +NV  +  M + Y 
Sbjct: 533 FIRNMPIKPDSAIWGALLGACRIHGNVE---MGKVASQNLF-ELDPKNVGYYVLMSNMYA 588

Query: 178 RAGE---VEEGYCLFRRMPRKNVVSWTAM 203
           + G+   V+E   L RR   +    W+++
Sbjct: 589 KVGKWDGVDEVRSLVRRQNLQKTPGWSSI 617



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 44/146 (30%), Positives = 60/146 (41%), Gaps = 19/146 (13%)

Query: 334 TFSVLFGAAGATANIDLGRQIH-CVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSN 392
           TF  L  AA          Q+H C L       D      L+  Y + G + +AY  F  
Sbjct: 73  TFPPLLRAAQGPGT---AAQLHACALRLGLLRGDAFASGALVHAYLRFGRVRDAYRAFDE 129

Query: 393 MVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACS-------- 444
           M  RD+ +WN+M+ G   +  A E + +F  M+  G   ++VT   +L  C         
Sbjct: 130 MRHRDVPAWNAMLSGLCRNARAAEAVGLFGRMVMEGVAGDAVTVSSVLPMCVLLGDRALA 189

Query: 445 ---HAGLVSRGW--ELF--NAMFDVY 463
              H   V  G   ELF  NAM DVY
Sbjct: 190 LAMHLYAVKHGLDDELFVCNAMIDVY 215


>gi|302142249|emb|CBI19452.3| unnamed protein product [Vitis vinifera]
          Length = 921

 Score =  280 bits (717), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 194/655 (29%), Positives = 325/655 (49%), Gaps = 78/655 (11%)

Query: 18  ITKYSKRGFIDEAKALFQ--LMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVS 75
           IT YS+ G +++A+ +F    +   +++ +N++++ ++ +G   E  RLF +M    VV+
Sbjct: 163 ITMYSRCGVLEDAQRVFDETSLLALDILLWNSIIAAYIFHGCWVEVLRLFCKMVSVGVVA 222

Query: 76  WTAMI-------CGLA---DAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARK 125
            T +        CG +     G +   R +   +   N+  WNS+V    + G L  A +
Sbjct: 223 PTELTYASVVNACGSSGEEKYGAMVHGRIIKAGLEATNL--WNSLVTFYGKCGNLQHASQ 280

Query: 126 VFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEM------EERNVVTWTSMISG---- 175
           +F  +  K+V+SWNAMIA   +      A+ LF  M       + N VT+ S++S     
Sbjct: 281 LFERISRKDVVSWNAMIAANEQRGEGENALGLFRRMLKVEPPVQPNRVTFLSLLSAVSGL 340

Query: 176 -------------------------------YCRAGEVEEGYCLFRRMPRKNVVSWTAMI 204
                                          Y +  EV +   +F R+  ++++SW +M+
Sbjct: 341 SALRCGREIHAHIFRLSLEVDTSITNSLITFYSKCREVGKAREIFERLLLRDIISWNSML 400

Query: 205 GGFAWNGFHKESLLLFIEM--KGICDNGNNCNV--QSCNSMINGYIRFGRLEEAQN--LF 258
            G+  N        +F  M   GI  + ++  +   + +   +G I F R +E     L 
Sbjct: 401 AGYEQNEQQGRCFDIFKRMMLSGIEPDSHSLTIIFNAASRDSSGLIYFRRGKEIHGYILR 460

Query: 259 DTVPVRDEISWT-SMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEAT 317
              P    +S + +++  Y    ++++A  +F  M +RD+ +W AM+ G  +N  F +  
Sbjct: 461 RITPGGVSLSVSNAILKMYAKFNRIADAEKIFKGMKNRDSYSWNAMMDGYSRNAKFEDVL 520

Query: 318 YLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMK-------TESESDLILE 370
            +F+++   G P  + + S+L  + G   ++ LG+Q H V+ K          +S L + 
Sbjct: 521 MIFLDILKQGFPLDHVSLSILLTSCGRLVSLQLGKQFHAVVAKLFNGQDCPHQDSLLSIN 580

Query: 371 NCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTH 430
           N LISMY+KCG I +A  +F  M  +D+ SW +M+ G +HHGLA E L++FE M   G  
Sbjct: 581 NALISMYSKCGSIKDAAQVFLKMERKDVFSWTAMITGCAHHGLAVEALQLFERMKTDGIK 640

Query: 431 PNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAE- 489
           PN VTFL +L AC+H GLV  G   F++M++ Y + P  EHY  MI+L GR+G+   A+ 
Sbjct: 641 PNQVTFLALLMACAHGGLVQEGSYYFDSMYNDYGLSPSIEHYACMIDLFGRSGQFDRAKS 700

Query: 490 --EFVLRLPFEPDH----RIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLC 543
             EF + L F+P H     +W  LLGAC       ++   AA ++LEL+P +   +++L 
Sbjct: 701 LVEFGITL-FKPYHDDILNLWKVLLGAC-HASKQLDLGVEAATKILELEPEDEATYILLA 758

Query: 544 NIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
           N+YA+SG   +  K+R  M  KG+RK  GCSW+       +F++GD    Q  EI
Sbjct: 759 NLYASSGLWEDAIKVRKAMRDKGLRKEVGCSWIDTGNRRHVFVAGDVYHPQRKEI 813



 Score =  152 bits (383), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 134/555 (24%), Positives = 240/555 (43%), Gaps = 98/555 (17%)

Query: 54  QNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNV--------- 104
           ++ RL  A++LF+  P R+V+SW+A+I   +  G   +A  LF++M    +         
Sbjct: 67  EHERLKCAQQLFDNFPNRDVISWSALIAAYSRCGNFAQAFGLFQKMMGEGLQPNGFSLAS 126

Query: 105 ---VSWNSMVVGLIRN---------------------------GELNEARKVFN--SMPI 132
              VS ++  +GL R                            G L +A++VF+  S+  
Sbjct: 127 LLKVSCSTGEIGLCRQLHGWSIRTGFGLDSGIRAAWITMYSRCGVLEDAQRVFDETSLLA 186

Query: 133 KNVISWNAMIAGYV-----------ECCMMGEAIVLFEEMEERNVVT------------- 168
            +++ WN++IA Y+            C M+   +V   E+   +VV              
Sbjct: 187 LDILLWNSIIAAYIFHGCWVEVLRLFCKMVSVGVVAPTELTYASVVNACGSSGEEKYGAM 246

Query: 169 ---------------WTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFH 213
                          W S+++ Y + G ++    LF R+ RK+VVSW AMI      G  
Sbjct: 247 VHGRIIKAGLEATNLWNSLVTFYGKCGNLQHASQLFERISRKDVVSWNAMIAANEQRGEG 306

Query: 214 KESLLLFIEMKGICD--NGNNCNVQSCNSMINGY--IRFGRLEEAQNLFDTVPVRDEISW 269
           + +L LF  M  +      N     S  S ++G   +R GR   A     ++ V   I+ 
Sbjct: 307 ENALGLFRRMLKVEPPVQPNRVTFLSLLSAVSGLSALRCGREIHAHIFRLSLEVDTSIT- 365

Query: 270 TSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVP 329
            S+I  Y    +V  A  +F  +  RD ++W +M++G  QNE       +F  M   G+ 
Sbjct: 366 NSLITFYSKCREVGKAREIFERLLLRDIISWNSMLAGYEQNEQQGRCFDIFKRMMLSGIE 425

Query: 330 PLNATFSVLFGAAGATAN----IDLGRQIHCVLMK--TESESDLILENCLISMYAKCGVI 383
           P + + +++F AA   ++       G++IH  +++  T     L + N ++ MYAK   I
Sbjct: 426 PDSHSLTIIFNAASRDSSGLIYFRRGKEIHGYILRRITPGGVSLSVSNAILKMYAKFNRI 485

Query: 384 DNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSAC 443
            +A  IF  M +RD  SWN+M+ G+S +    + L +F  +L+ G   + V+   +L++C
Sbjct: 486 ADAEKIFKGMKNRDSYSWNAMMDGYSRNAKFEDVLMIFLDILKQGFPLDHVSLSILLTSC 545

Query: 444 SHAGLVSRGWELFNAMFDVYKIQPGPEHYV------SMINLLGRAGKIKEAEEFVLRLPF 497
                +  G +    +  ++  Q  P          ++I++  + G IK+A +  L++  
Sbjct: 546 GRLVSLQLGKQFHAVVAKLFNGQDCPHQDSLLSINNALISMYSKCGSIKDAAQVFLKME- 604

Query: 498 EPDHRIWGALLGACG 512
             D   W A++  C 
Sbjct: 605 RKDVFSWTAMITGCA 619



 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 125/501 (24%), Positives = 214/501 (42%), Gaps = 87/501 (17%)

Query: 119 ELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEE--------------- 163
            L  A+++F++ P ++VISW+A+IA Y  C    +A  LF++M                 
Sbjct: 70  RLKCAQQLFDNFPNRDVISWSALIAAYSRCGNFAQAFGLFQKMMGEGLQPNGFSLASLLK 129

Query: 164 -----------RNVVTWT-------------SMISGYCRAGEVEEGYCLFRR--MPRKNV 197
                      R +  W+             + I+ Y R G +E+   +F    +   ++
Sbjct: 130 VSCSTGEIGLCRQLHGWSIRTGFGLDSGIRAAWITMYSRCGVLEDAQRVFDETSLLALDI 189

Query: 198 VSWTAMIGGFAWNGFHKESLLLFIEMKGI-----CDNGNNCNVQSCNS--------MING 244
           + W ++I  + ++G   E L LF +M  +      +      V +C S        M++G
Sbjct: 190 LLWNSIIAAYIFHGCWVEVLRLFCKMVSVGVVAPTELTYASVVNACGSSGEEKYGAMVHG 249

Query: 245 YIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMI 304
            I    L EA NL           W S++  Y   G + +A  LF  +  +D V+W AMI
Sbjct: 250 RIIKAGL-EATNL-----------WNSLVTFYGKCGNLQHASQLFERISRKDVVSWNAMI 297

Query: 305 SGLVQNELFVEATYLFMEMRAHGVP--PLNATFSVLFGAAGATANIDLGRQIHCVLMKTE 362
           +   Q      A  LF  M     P  P   TF  L  A    + +  GR+IH  + +  
Sbjct: 298 AANEQRGEGENALGLFRRMLKVEPPVQPNRVTFLSLLSAVSGLSALRCGREIHAHIFRLS 357

Query: 363 SESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFE 422
            E D  + N LI+ Y+KC  +  A  IF  ++ RD++SWNSM+ G+  +        +F+
Sbjct: 358 LEVDTSITNSLITFYSKCREVGKAREIFERLLLRDIISWNSMLAGYEQNEQQGRCFDIFK 417

Query: 423 SMLESGTHPNSVTFLGILSACSH--AGLV--SRGWELFNAMFDVYKIQPGPEHYV---SM 475
            M+ SG  P+S +   I +A S   +GL+   RG E+    + + +I PG        ++
Sbjct: 418 RMMLSGIEPDSHSLTIIFNAASRDSSGLIYFRRGKEIHG--YILRRITPGGVSLSVSNAI 475

Query: 476 INLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLN 535
           + +  +  +I +AE+ + +     D   W A++      +G +  A+     ++ LD L 
Sbjct: 476 LKMYAKFNRIADAEK-IFKGMKNRDSYSWNAMM------DGYSRNAKFEDVLMIFLDILK 528

Query: 536 AP---AHVVLCNIYAASGRHV 553
                 HV L  +  + GR V
Sbjct: 529 QGFPLDHVSLSILLTSCGRLV 549



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 79/292 (27%), Positives = 145/292 (49%), Gaps = 21/292 (7%)

Query: 285 AYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGA 344
           A  LF N P+RD ++W+A+I+   +   F +A  LF +M   G+ P   + + L   + +
Sbjct: 74  AQQLFDNFPNRDVISWSALIAAYSRCGNFAQAFGLFQKMMGEGLQPNGFSLASLLKVSCS 133

Query: 345 TANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIF--SNMVSRDLVSWN 402
           T  I L RQ+H   ++T    D  +    I+MY++CGV+++A  +F  +++++ D++ WN
Sbjct: 134 TGEIGLCRQLHGWSIRTGFGLDSGIRAAWITMYSRCGVLEDAQRVFDETSLLALDILLWN 193

Query: 403 SMVMGFSHHGLANETLKVFESMLESG-THPNSVTFLGILSACSHAGLVSRGWELFNAMFD 461
           S++  +  HG   E L++F  M+  G   P  +T+  +++AC      S G E + AM  
Sbjct: 194 SIIAAYIFHGCWVEVLRLFCKMVSVGVVAPTELTYASVVNACG-----SSGEEKYGAMVH 248

Query: 462 VYKIQPGPEH---YVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNA 518
              I+ G E    + S++   G+ G ++ A +   R+    D   W A++ A     G  
Sbjct: 249 GRIIKAGLEATNLWNSLVTFYGKCGNLQHASQLFERIS-RKDVVSWNAMIAA-NEQRGEG 306

Query: 519 EIAEHAAKRLLELDPLNAPAHVVLCNIYAA--------SGRHVEEHKLRMDM 562
           E A    +R+L+++P   P  V   ++ +A         GR +  H  R+ +
Sbjct: 307 ENALGLFRRMLKVEPPVQPNRVTFLSLLSAVSGLSALRCGREIHAHIFRLSL 358



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 37/130 (28%), Positives = 65/130 (50%), Gaps = 9/130 (6%)

Query: 6   HPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLF 65
           H  SL+    + I+ YSK G I +A  +F  M +++V S+ AM++G   +G   EA +LF
Sbjct: 572 HQDSLLSINNALISMYSKCGSIKDAAQVFLKMERKDVFSWTAMITGCAHHGLAVEALQLF 631

Query: 66  EEMP----ERNVVSWTAMICGLADAGRVCEARKLFEEMPER-----NVVSWNSMVVGLIR 116
           E M     + N V++ A++   A  G V E    F+ M        ++  +  M+    R
Sbjct: 632 ERMKTDGIKPNQVTFLALLMACAHGGLVQEGSYYFDSMYNDYGLSPSIEHYACMIDLFGR 691

Query: 117 NGELNEARKV 126
           +G+ + A+ +
Sbjct: 692 SGQFDRAKSL 701


>gi|449480302|ref|XP_004155856.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
          Length = 654

 Score =  280 bits (717), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 173/540 (32%), Positives = 276/540 (51%), Gaps = 51/540 (9%)

Query: 106 SWNSMVVGLIRNGELN--EARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEE 163
           S N ++  ++  G L    A  VF    + +V++WN+M+  +V   M   A+  + EM E
Sbjct: 12  SLNKLIAHVLSMGSLGVGYAYSVFAHTRVLDVLTWNSMLRAFVNSNMPRRALQSYTEMLE 71

Query: 164 RN-------------------------------VVTW---------TSMISGYCRAGEVE 183
           R+                               VV +         T++++ Y   G+++
Sbjct: 72  RSRNVPDRFTFPSLLKGCALLLEFKVGKVLHGQVVKYMLHSDLYIETTLLNMYAACGDLK 131

Query: 184 EGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMIN 243
               LF RM  +N V WT+MI G+  N    E+LLL+ +M+   ++G + +  +  ++++
Sbjct: 132 SARFLFERMGHRNKVVWTSMISGYMKNHCPNEALLLYKKME---EDGFSPDEVTMATLVS 188

Query: 244 GYIRFGRLEEAQNLFDTVPVRD----EISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVA 299
                  L     L   +   D     +  +++++ Y   G +  A  +F  + D+D  A
Sbjct: 189 ACAELKDLGVGMKLHSHIREMDMKICAVLGSALVNMYAKCGDLKTARQVFDQLSDKDVYA 248

Query: 300 WTAMISGLVQNELFVEATYLFMEMRA-HGVPPLNATFSVLFGAAGATANIDLGRQIHCVL 358
           W+A+I G V+N    EA  LF E+     + P   T   +  A     +++ GR +H  +
Sbjct: 249 WSALIFGYVKNNRSTEALQLFREVAGGSNMRPNEVTILAVISACAQLGDLETGRWVHDYI 308

Query: 359 MKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETL 418
            +T+    + L N LI M++KCG ID A  IF +M  +DL+SWNSMV G + HGL  E L
Sbjct: 309 TRTQKGHSVSLNNSLIDMFSKCGDIDAAKRIFDSMSYKDLISWNSMVNGLALHGLGREAL 368

Query: 419 KVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINL 478
             F  M  +   P+ +TF+G+L+ACSHAGLV  G +LF  +  +Y ++   EHY  M++L
Sbjct: 369 AQFHLMQTTDLQPDEITFIGVLTACSHAGLVQEGKKLFYEIEALYGVRLKSEHYGCMVDL 428

Query: 479 LGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPA 538
           L RAG + EA EF+  +P +PD  IWG++LGAC     N E+ E AA+ LLEL+P N   
Sbjct: 429 LCRAGLLAEAREFIRVMPLQPDGAIWGSMLGACRV-YNNLELGEEAARCLLELEPTNDGV 487

Query: 539 HVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
           +++L NIYA      E  K+R  M  KG++K PGCS ++ +     FL+GD    ++AEI
Sbjct: 488 YILLSNIYARRKMWNEVKKVRELMNEKGIQKTPGCSSVVIDNIAHSFLAGDCSHPEIAEI 547



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 100/438 (22%), Positives = 187/438 (42%), Gaps = 72/438 (16%)

Query: 30  AKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERN----------------- 72
           A ++F      +V+++N+ML  F+ +     A + + EM ER+                 
Sbjct: 31  AYSVFAHTRVLDVLTWNSMLRAFVNSNMPRRALQSYTEMLERSRNVPDRFTFPSLLKGCA 90

Query: 73  --------------VVSW---------TAMICGLADAGRVCEARKLFEEMPERNVVSWNS 109
                         VV +         T ++   A  G +  AR LFE M  RN V W S
Sbjct: 91  LLLEFKVGKVLHGQVVKYMLHSDLYIETTLLNMYAACGDLKSARFLFERMGHRNKVVWTS 150

Query: 110 MVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCM----MGEAIVLFEEMEERN 165
           M+ G ++N   NEA  ++  M           +A  V  C     +G  + L   + E +
Sbjct: 151 MISGYMKNHCPNEALLLYKKMEEDGFSPDEVTMATLVSACAELKDLGVGMKLHSHIREMD 210

Query: 166 V----VTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFI 221
           +    V  +++++ Y + G+++    +F ++  K+V +W+A+I G+  N    E+L LF 
Sbjct: 211 MKICAVLGSALVNMYAKCGDLKTARQVFDQLSDKDVYAWSALIFGYVKNNRSTEALQLFR 270

Query: 222 EMKGICDNGNNC--NVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDE---ISW-TSMIDG 275
           E+ G    G+N   N  +  ++I+   + G LE  + + D +    +   +S   S+ID 
Sbjct: 271 EVAG----GSNMRPNEVTILAVISACAQLGDLETGRWVHDYITRTQKGHSVSLNNSLIDM 326

Query: 276 YLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATF 335
           +   G +  A  +F +M  +D ++W +M++GL  + L  EA   F  M+   + P   TF
Sbjct: 327 FSKCGDIDAAKRIFDSMSYKDLISWNSMVNGLALHGLGREALAQFHLMQTTDLQPDEITF 386

Query: 336 SVLFGAAGATANIDLGRQ-------IHCVLMKTESESDLILENCLISMYAKCGVIDNAYN 388
             +  A      +  G++       ++ V +K+E         C++ +  + G++  A  
Sbjct: 387 IGVLTACSHAGLVQEGKKLFYEIEALYGVRLKSEH------YGCMVDLLCRAGLLAEARE 440

Query: 389 IFSNM-VSRDLVSWNSMV 405
               M +  D   W SM+
Sbjct: 441 FIRVMPLQPDGAIWGSML 458



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 97/378 (25%), Positives = 176/378 (46%), Gaps = 36/378 (9%)

Query: 15  TSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPER--- 71
           T+ +  Y+  G +  A+ LF+ M  RN V + +M+SG+++N   +EA  L+++M E    
Sbjct: 118 TTLLNMYAACGDLKSARFLFERMGHRNKVVWTSMISGYMKNHCPNEALLLYKKMEEDGFS 177

Query: 72  -NVVSWTAMICGLADAGRVCEARKLFEEMPERNV----VSWNSMVVGLIRNGELNEARKV 126
            + V+   ++   A+   +    KL   + E ++    V  +++V    + G+L  AR+V
Sbjct: 178 PDEVTMATLVSACAELKDLGVGMKLHSHIREMDMKICAVLGSALVNMYAKCGDLKTARQV 237

Query: 127 FNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEME-----ERNVVTWTSMISGYCRAGE 181
           F+ +  K+V +W+A+I GYV+     EA+ LF E+        N VT  ++IS   + G+
Sbjct: 238 FDQLSDKDVYAWSALIFGYVKNNRSTEALQLFREVAGGSNMRPNEVTILAVISACAQLGD 297

Query: 182 VEEG---YCLFRRMPRKNVVSW-TAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQS 237
           +E G   +    R  + + VS   ++I  F+  G    +       K I D+ +  ++ S
Sbjct: 298 LETGRWVHDYITRTQKGHSVSLNNSLIDMFSKCGDIDAA-------KRIFDSMSYKDLIS 350

Query: 238 CNSMINGYIRFGRLEEAQ---NLFDTVPVR-DEISWTSMIDGYLSVGQVSNAYYLFHNMP 293
            NSM+NG    G   EA    +L  T  ++ DEI++  ++      G V     LF+ + 
Sbjct: 351 WNSMVNGLALHGLGREALAQFHLMQTTDLQPDEITFIGVLTACSHAGLVQEGKKLFYEIE 410

Query: 294 DRDAVA-----WTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANI 348
               V      +  M+  L +  L  EA      +R   + P  A +  + GA     N+
Sbjct: 411 ALYGVRLKSEHYGCMVDLLCRAGLLAEAREF---IRVMPLQPDGAIWGSMLGACRVYNNL 467

Query: 349 DLGRQIHCVLMKTESESD 366
           +LG +    L++ E  +D
Sbjct: 468 ELGEEAARCLLELEPTND 485


>gi|147820355|emb|CAN67654.1| hypothetical protein VITISV_038410 [Vitis vinifera]
          Length = 492

 Score =  280 bits (717), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 158/447 (35%), Positives = 240/447 (53%), Gaps = 9/447 (2%)

Query: 154 AIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFH 213
           A  LF  M + +V+  T  IS Y   GEV+    +F  M   + VSW  MI G+  N   
Sbjct: 37  AYALFH-MRKEDVLMLTKRISDYSLKGEVDYARTIFEEMSHPDTVSWNVMIRGYVENHRI 95

Query: 214 KESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMI 273
            ++  LF +M          +  S N+MI  Y + G+   A  LF  +P +D +SWT++I
Sbjct: 96  GDARELFDKMP-------VRSSVSWNTMIMAYAKEGKTHIAMKLFIVMPDKDVVSWTAII 148

Query: 274 DGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNA 333
                   + +A+ LF  MP+  +V+W ++ISG  QN L  E    F EM + GV P + 
Sbjct: 149 TALSRGSHIEDAWRLFKLMPEPSSVSWASIISGFQQNGLAAETLCRFKEMLSVGVQPTSH 208

Query: 334 TFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNM 393
           +F+    A+   A + L +Q++  L+K   ES+  + N  ISM+ K G   NA  +  ++
Sbjct: 209 SFTSALTASADLAMLSLSQQLYSQLLKRGFESNTXIGNSAISMFIKSGSFRNARRVLEDL 268

Query: 394 VSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGW 453
              D+V+WN+MV+G+  +G   E +  F  M ++   P+ V+FLG+L  CSH G V +G 
Sbjct: 269 PQPDIVTWNAMVVGYGQNGYGIEAIMSFHQMQKAKFLPDRVSFLGLLHGCSHCGYVEKGK 328

Query: 454 ELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGF 513
           + F +M   Y I PGPEHY  M++LL RAG +KEA + +  +PFEP    W  LL  C  
Sbjct: 329 QYFRSMESNYGISPGPEHYACMVDLLSRAGFLKEAHKLIKEMPFEPTCIFWRTLLNGCRI 388

Query: 514 CEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGC 573
             G+ E+  +AA R+LELDP N+ A +++ +IYA++GR  E  ++R  M  +  RK  GC
Sbjct: 389 W-GDLELGFYAANRILELDPYNSSACLMVIDIYASAGRWKEVLEMRRQMRKREARKELGC 447

Query: 574 SWLMRNGGIQMFLSGDKIPAQVAEILL 600
           SW+   G I +F + D    +   I L
Sbjct: 448 SWIEIKGRIHLFTTRDDTHPEADHIYL 474



 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 111/392 (28%), Positives = 183/392 (46%), Gaps = 27/392 (6%)

Query: 27  IDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADA 86
           I    A+ +   +RN VS   +L    QNG  + A  LF  M + +V+  T  I   +  
Sbjct: 10  IKTVYAIVKFTGRRNTVS---LLHP--QNGLGAYA--LFH-MRKEDVLMLTKRISDYSLK 61

Query: 87  GRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYV 146
           G V  AR +FEEM   + VSWN M+ G + N  + +AR++F+ MP+++ +SWN MI  Y 
Sbjct: 62  GEVDYARTIFEEMSHPDTVSWNVMIRGYVENHRIGDARELFDKMPVRSSVSWNTMIMAYA 121

Query: 147 ECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGG 206
           +      A+ LF  M +++VV+WT++I+   R   +E+ + LF+ MP  + VSW ++I G
Sbjct: 122 KEGKTHIAMKLFIVMPDKDVVSWTAIITALSRGSHIEDAWRLFKLMPEPSSVSWASIISG 181

Query: 207 FAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDE 266
           F  NG   E+L  F EM  +   G      S  S +        L  +Q L+  +  R  
Sbjct: 182 FQQNGLAAETLCRFKEMLSV---GVQPTSHSFTSALTASADLAMLSLSQQLYSQLLKRGF 238

Query: 267 ISWT----SMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFME 322
            S T    S I  ++  G   NA  +  ++P  D V W AM+ G  QN   +EA   F +
Sbjct: 239 ESNTXIGNSAISMFIKSGSFRNARRVLEDLPQPDIVTWNAMVVGYGQNGYGIEAIMSFHQ 298

Query: 323 MRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILE------NCLISM 376
           M+     P   +F  L         ++ G+Q    +     ES+  +        C++ +
Sbjct: 299 MQKAKFLPDRVSFLGLLHGCSHCGYVEKGKQYFRSM-----ESNYGISPGPEHYACMVDL 353

Query: 377 YAKCGVIDNAYNIFSNM-VSRDLVSWNSMVMG 407
            ++ G +  A+ +   M      + W +++ G
Sbjct: 354 LSRAGFLKEAHKLIKEMPFEPTCIFWRTLLNG 385



 Score =  144 bits (363), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 90/344 (26%), Positives = 164/344 (47%), Gaps = 48/344 (13%)

Query: 8   KSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEE 67
           K  V+ LT  I+ YS +G +D A+ +F+ M   + VS+N M+ G+++N R+ +AR LF++
Sbjct: 45  KEDVLMLTKRISDYSLKGEVDYARTIFEEMSHPDTVSWNVMIRGYVENHRIGDARELFDK 104

Query: 68  MPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVF 127
           MP R+ VSW  MI   A  G+   A KLF  MP+++VVSW +++  L R   + +A ++F
Sbjct: 105 MPVRSSVSWNTMIMAYAKEGKTHIAMKLFIVMPDKDVVSWTAIITALSRGSHIEDAWRLF 164

Query: 128 NSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEME------------------------- 162
             MP  + +SW ++I+G+ +  +  E +  F+EM                          
Sbjct: 165 KLMPEPSSVSWASIISGFQQNGLAAETLCRFKEMLSVGVQPTSHSFTSALTASADLAMLS 224

Query: 163 --------------ERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFA 208
                         E N     S IS + ++G       +   +P+ ++V+W AM+ G+ 
Sbjct: 225 LSQQLYSQLLKRGFESNTXIGNSAISMFIKSGSFRNARRVLEDLPQPDIVTWNAMVVGYG 284

Query: 209 WNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEIS 268
            NG+  E+++ F +M+      +     S   +++G    G +E+ +  F ++     IS
Sbjct: 285 QNGYGIEAIMSFHQMQKAKFLPDRV---SFLGLLHGCSHCGYVEKGKQYFRSMESNYGIS 341

Query: 269 -----WTSMIDGYLSVGQVSNAYYLFHNMP-DRDAVAWTAMISG 306
                +  M+D     G +  A+ L   MP +   + W  +++G
Sbjct: 342 PGPEHYACMVDLLSRAGFLKEAHKLIKEMPFEPTCIFWRTLLNG 385



 Score =  102 bits (253), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 71/234 (30%), Positives = 121/234 (51%), Gaps = 17/234 (7%)

Query: 7   PKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFE 66
           P   VV  T+ IT  S+   I++A  LF+LMP+ + VS+ +++SGF QNG  +E    F+
Sbjct: 137 PDKDVVSWTAIITALSRGSHIEDAWRLFKLMPEPSSVSWASIISGFQQNGLAAETLCRFK 196

Query: 67  EMPERNVV----SWTAMICGLADAGRVCEARKLFEEMPER----NVVSWNSMVVGLIRNG 118
           EM    V     S+T+ +   AD   +  +++L+ ++ +R    N    NS +   I++G
Sbjct: 197 EMLSVGVQPTSHSFTSALTASADLAMLSLSQQLYSQLLKRGFESNTXIGNSAISMFIKSG 256

Query: 119 ELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEER----NVVTWTSMIS 174
               AR+V   +P  ++++WNAM+ GY +     EAI+ F +M++     + V++  ++ 
Sbjct: 257 SFRNARRVLEDLPQPDIVTWNAMVVGYGQNGYGIEAIMSFHQMQKAKFLPDRVSFLGLLH 316

Query: 175 GYCRAGEVEEGYCLFRRMPRKNVVS-----WTAMIGGFAWNGFHKESLLLFIEM 223
           G    G VE+G   FR M     +S     +  M+   +  GF KE+  L  EM
Sbjct: 317 GCSHCGYVEKGKQYFRSMESNYGISPGPEHYACMVDLLSRAGFLKEAHKLIKEM 370


>gi|356564895|ref|XP_003550682.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g30700-like [Glycine max]
          Length = 778

 Score =  280 bits (717), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 180/638 (28%), Positives = 304/638 (47%), Gaps = 56/638 (8%)

Query: 13  HLTSSITKYSKR----GFIDEAKALFQLMPQRNVVSYNAMLSGFL---QNGRLSEARRLF 65
           H  +++TK +++    G    A+ALF  +P+ ++  +N ++ GF        +S    L 
Sbjct: 38  HDLATVTKLTQKLFDVGATRHARALFFSVPKPDIFLFNVLIKGFSFSPDASSISFYTHLL 97

Query: 66  E--EMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEA 123
           +   +   N     A+     D   +C       +  + N+   +++V    +   +  A
Sbjct: 98  KNTTLSPDNFTYAFAISASPDDNLGMCLHAHAVVDGFDSNLFVASALVDLYCKFSRVAYA 157

Query: 124 RKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNV----------------- 166
           RKVF+ MP ++ + WN MI G V  C   +++ +F++M  + V                 
Sbjct: 158 RKVFDKMPDRDTVLWNTMITGLVRNCCYDDSVQVFKDMVAQGVRLDSTTVATVLPAVAEM 217

Query: 167 ----------------------VTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMI 204
                                    T +IS + +  +V+    LF  + + ++VS+ A+I
Sbjct: 218 QEVKVGMGIQCLALKLGFHFDDYVLTGLISVFSKCEDVDTARLLFGMIRKPDLVSYNALI 277

Query: 205 GGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNL----FDT 260
            GF+ NG  + ++  F E+     +G   +  +   +I     FG L  A  +      +
Sbjct: 278 SGFSCNGETECAVKYFREL---LVSGQRVSSSTMVGLIPVSSPFGHLHLACCIQGFCVKS 334

Query: 261 VPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLF 320
             +      T++   Y  + ++  A  LF    ++   AW AMISG  Q+ L   A  LF
Sbjct: 335 GTILQPSVSTALTTIYSRLNEIDLARQLFDESSEKTVAAWNAMISGYAQSGLTEMAISLF 394

Query: 321 MEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKC 380
            EM      P   T + +  A      +  G+ +H ++     E ++ +   LI MYAKC
Sbjct: 395 QEMMTTEFTPNPVTITSILSACAQLGALSFGKSVHQLIKSKNLEQNIYVSTALIDMYAKC 454

Query: 381 GVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGIL 440
           G I  A  +F     ++ V+WN+M+ G+  HG  +E LK+F  ML  G  P+SVTFL +L
Sbjct: 455 GNISEASQLFDLTSEKNTVTWNTMIFGYGLHGYGDEALKLFNEMLHLGFQPSSVTFLSVL 514

Query: 441 SACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPD 500
            ACSHAGLV  G E+F+AM + Y+I+P  EHY  M+++LGRAG++++A EF+ ++P EP 
Sbjct: 515 YACSHAGLVREGDEIFHAMVNKYRIEPLAEHYACMVDILGRAGQLEKALEFIRKMPVEPG 574

Query: 501 HRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRM 560
             +WG LLGAC     +  +A  A++RL ELDP N   +V+L NIY+      +   +R 
Sbjct: 575 PAVWGTLLGAC-MIHKDTNLARVASERLFELDPGNVGYYVLLSNIYSVERNFPKAASVRE 633

Query: 561 DMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
            +  + + K PGC+ +  NG   +F+ GD+  +Q   I
Sbjct: 634 AVKKRNLSKTPGCTLIEVNGTPHVFVCGDRSHSQTTSI 671



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 50/204 (24%), Positives = 91/204 (44%), Gaps = 35/204 (17%)

Query: 12  VHLTSSITKYSKRGFIDEAKALFQLMP----QRNVVSYNAMLSGFLQNGRLSEARRLFEE 67
           V +TS ++  ++ G +   K++ QL+     ++N+    A++  + + G +SEA +LF+ 
Sbjct: 407 VTITSILSACAQLGALSFGKSVHQLIKSKNLEQNIYVSTALIDMYAKCGNISEASQLFDL 466

Query: 68  MPERNVVSWTAMICGLADAGRVCEARKLFEEMP----ERNVVSWNSMVVGLIRNGELNEA 123
             E+N V+W  MI G    G   EA KLF EM     + + V++ S++      G + E 
Sbjct: 467 TSEKNTVTWNTMIFGYGLHGYGDEALKLFNEMLHLGFQPSSVTFLSVLYACSHAGLVREG 526

Query: 124 RKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVE 183
            ++F++M  K  I                      E + E     +  M+    RAG++E
Sbjct: 527 DEIFHAMVNKYRI----------------------EPLAEH----YACMVDILGRAGQLE 560

Query: 184 EGYCLFRRMP-RKNVVSWTAMIGG 206
           +     R+MP       W  ++G 
Sbjct: 561 KALEFIRKMPVEPGPAVWGTLLGA 584


>gi|115459414|ref|NP_001053307.1| Os04g0514500 [Oryza sativa Japonica Group]
 gi|32482936|emb|CAE02340.1| OSJNBb0072M01.1 [Oryza sativa Japonica Group]
 gi|38345689|emb|CAD41109.2| OSJNBb0070J16.5 [Oryza sativa Japonica Group]
 gi|113564878|dbj|BAF15221.1| Os04g0514500 [Oryza sativa Japonica Group]
 gi|215768472|dbj|BAH00701.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|218195211|gb|EEC77638.1| hypothetical protein OsI_16630 [Oryza sativa Indica Group]
          Length = 1027

 Score =  280 bits (717), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 194/630 (30%), Positives = 308/630 (48%), Gaps = 58/630 (9%)

Query: 15  TSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEM------ 68
           +S I  Y+K G   +AK +F L  ++N+V +NAML+GF+QN    EA R+F+ M      
Sbjct: 364 SSLINLYAKCGCPSDAKNVFDLSCEKNIVMWNAMLTGFVQNELPEEAIRMFQYMMRYTLQ 423

Query: 69  -PERNVVS--------------------------------WTAMICGLADAGRVCEARKL 95
             E   VS                                  A +   +  G + +A+ L
Sbjct: 424 TDEFTFVSILGACTYLSSFYLGKQVHCVTIKNCMDISLFVANATLDMYSKYGAIGDAKAL 483

Query: 96  FEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAI 155
           F  +P ++ +SWN++ VGL +N E  EA  +   M +  +   +   +  +  C    A 
Sbjct: 484 FSLIPYKDSISWNALTVGLAQNLEEEEAVCMLKRMRLHGITPDDVSFSTAINACSNIRAT 543

Query: 156 VLFEEMEE--------RNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGF 207
              +++           N    +S+I  Y + G+VE    +F ++   ++V   A+I GF
Sbjct: 544 ETGKQIHCLAIKYGICSNHAVGSSLIDLYSKHGDVESSRKIFAQVDASSIVPINALIAGF 603

Query: 208 AWNGFHKESLLLFIEMKGICDNGNNCNVQS----CNSMINGYIRFGRLEEAQNLFDTVPV 263
             N    E++ LF ++       ++    S    C+  +N  I  G+      L   V  
Sbjct: 604 VQNNNEDEAIQLFQQVLKDGLKPSSVTFSSILSGCSGSLNSAI--GKQVHCYTLKSGVLY 661

Query: 264 RDEISWTSMIDGYLSVGQVSNAYYLFHNMPD-RDAVAWTAMISGLVQNELFVEATYLFME 322
            D +   S+   YL    + +A  L   MPD ++   WTA+ISG  QN     +   F  
Sbjct: 662 DDTLLGVSLAGIYLKSKMLEDANKLLTEMPDHKNLFEWTAIISGYAQNGYGDHSLVSFWR 721

Query: 323 MRAHGVPPLNATF-SVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCG 381
           MR   V    ATF SVL   +  TA  D G++IH ++ K+   S     + LI MY+KCG
Sbjct: 722 MRHCNVRSDEATFASVLKACSDVTAFAD-GKEIHGLITKSGFGSYETATSALIDMYSKCG 780

Query: 382 VIDNAYNIFSNMVSR-DLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGIL 440
            + +++  F  + ++ D++ WNSM++GF+ +G A+E L +F+ M E    P+ VTFLG+L
Sbjct: 781 DVISSFEAFKELKNKQDIMPWNSMIVGFAKNGYADEALLLFQKMEELQIKPDEVTFLGVL 840

Query: 441 SACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPD 500
            AC+H+GL+S G   F +M  VY + P  +HY   I+LLGR G ++EA+E + +LPF PD
Sbjct: 841 IACTHSGLISEGRHFFGSMRKVYGLTPRLDHYACFIDLLGRGGHLQEAQEAIDQLPFRPD 900

Query: 501 HRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRM 560
             +W   L AC     + E  + AA++L+EL+P  +  +V+L +++AA+G   E    R 
Sbjct: 901 GVVWATYLAACRM-HKDEERGKIAARKLVELEPQYSSTYVLLSSLHAATGNWAEAKVTRE 959

Query: 561 DMGLKGVRKVPGCSWLMRNGGIQMFLSGDK 590
            M  KGV K PGCSW+       +FL  DK
Sbjct: 960 SMREKGVAKFPGCSWITVGNKTSLFLVQDK 989



 Score =  166 bits (419), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 119/450 (26%), Positives = 220/450 (48%), Gaps = 33/450 (7%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPER----NV 73
           +  Y+K G +  A+ +F  +   + + +++M++ + + G   EA  LF  M +     + 
Sbjct: 200 VDMYAKCGDVPNARRVFDGIACPDTICWSSMIACYHRVGCYQEALALFSRMDKMGSAPDQ 259

Query: 74  VSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNG-ELN----------- 121
           V+   +I  LA +GR+  A  L ++MP  + V+WN+++ G  ++G E N           
Sbjct: 260 VTLVTIISTLASSGRLDHATALLKKMPTPSTVAWNAVISGHAQSGLEFNVLGLYKDMRSW 319

Query: 122 ---EARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCR 178
                R  F SM     +S  A +  +VE   M  A V+     + NV   +S+I+ Y +
Sbjct: 320 GLWPTRSTFASM-----LSAAANMKAFVEGQQMHAAAVM--HGLDANVFVGSSLINLYAK 372

Query: 179 AGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQS- 237
            G   +   +F     KN+V W AM+ GF  N   +E++ +F  M       +     S 
Sbjct: 373 CGCPSDAKNVFDLSCEKNIVMWNAMLTGFVQNELPEEAIRMFQYMMRYTLQTDEFTFVSI 432

Query: 238 ---CNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPD 294
              C  + + Y+  G+      + + + +   ++  + +D Y   G + +A  LF  +P 
Sbjct: 433 LGACTYLSSFYL--GKQVHCVTIKNCMDISLFVA-NATLDMYSKYGAIGDAKALFSLIPY 489

Query: 295 RDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQI 354
           +D+++W A+  GL QN    EA  +   MR HG+ P + +FS    A       + G+QI
Sbjct: 490 KDSISWNALTVGLAQNLEEEEAVCMLKRMRLHGITPDDVSFSTAINACSNIRATETGKQI 549

Query: 355 HCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLA 414
           HC+ +K    S+  + + LI +Y+K G ++++  IF+ + +  +V  N+++ GF  +   
Sbjct: 550 HCLAIKYGICSNHAVGSSLIDLYSKHGDVESSRKIFAQVDASSIVPINALIAGFVQNNNE 609

Query: 415 NETLKVFESMLESGTHPNSVTFLGILSACS 444
           +E +++F+ +L+ G  P+SVTF  ILS CS
Sbjct: 610 DEAIQLFQQVLKDGLKPSSVTFSSILSGCS 639



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 102/388 (26%), Positives = 189/388 (48%), Gaps = 12/388 (3%)

Query: 116 RNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEER----NVVTWTS 171
           + G++  AR+VF+ +   + I W++MIA Y       EA+ LF  M++     + VT  +
Sbjct: 205 KCGDVPNARRVFDGIACPDTICWSSMIACYHRVGCYQEALALFSRMDKMGSAPDQVTLVT 264

Query: 172 MISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGN 231
           +IS    +G ++    L ++MP  + V+W A+I G A +G     L L+ +M+     G 
Sbjct: 265 IISTLASSGRLDHATALLKKMPTPSTVAWNAVISGHAQSGLEFNVLGLYKDMRSW---GL 321

Query: 232 NCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVR----DEISWTSMIDGYLSVGQVSNAYY 287
                +  SM++         E Q +     +     +    +S+I+ Y   G  S+A  
Sbjct: 322 WPTRSTFASMLSAAANMKAFVEGQQMHAAAVMHGLDANVFVGSSLINLYAKCGCPSDAKN 381

Query: 288 LFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATAN 347
           +F    +++ V W AM++G VQNEL  EA  +F  M  + +     TF  + GA    ++
Sbjct: 382 VFDLSCEKNIVMWNAMLTGFVQNELPEEAIRMFQYMMRYTLQTDEFTFVSILGACTYLSS 441

Query: 348 IDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMG 407
             LG+Q+HCV +K   +  L + N  + MY+K G I +A  +FS +  +D +SWN++ +G
Sbjct: 442 FYLGKQVHCVTIKNCMDISLFVANATLDMYSKYGAIGDAKALFSLIPYKDSISWNALTVG 501

Query: 408 FSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQP 467
            + +    E + + + M   G  P+ V+F   ++ACS+      G ++ + +   Y I  
Sbjct: 502 LAQNLEEEEAVCMLKRMRLHGITPDDVSFSTAINACSNIRATETGKQI-HCLAIKYGICS 560

Query: 468 GPEHYVSMINLLGRAGKIKEAEEFVLRL 495
                 S+I+L  + G ++ + +   ++
Sbjct: 561 NHAVGSSLIDLYSKHGDVESSRKIFAQV 588



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 126/561 (22%), Positives = 246/561 (43%), Gaps = 79/561 (14%)

Query: 12  VHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEM--- 68
           V L + I+  +  G +D A AL + MP  + V++NA++SG  Q+G       L+++M   
Sbjct: 260 VTLVTIISTLASSGRLDHATALLKKMPTPSTVAWNAVISGHAQSGLEFNVLGLYKDMRSW 319

Query: 69  ---PERNVVSWTAMICGLADAGRVCEARKLFEEMP----ERNVVSWNSMVVGLIRNGELN 121
              P R+  ++ +M+   A+     E +++         + NV   +S++    + G  +
Sbjct: 320 GLWPTRS--TFASMLSAAANMKAFVEGQQMHAAAVMHGLDANVFVGSSLINLYAKCGCPS 377

Query: 122 EARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEME----ERNVVTWTSMISG-- 175
           +A+ VF+    KN++ WNAM+ G+V+  +  EAI +F+ M     + +  T+ S++    
Sbjct: 378 DAKNVFDLSCEKNIVMWNAMLTGFVQNELPEEAIRMFQYMMRYTLQTDEFTFVSILGACT 437

Query: 176 ---------------------------------YCRAGEVEEGYCLFRRMPRKNVVSWTA 202
                                            Y + G + +   LF  +P K+ +SW A
Sbjct: 438 YLSSFYLGKQVHCVTIKNCMDISLFVANATLDMYSKYGAIGDAKALFSLIPYKDSISWNA 497

Query: 203 MIGGFAWNGFHKESLLLFIEMK--GIC--DNGNNCNVQSCNSMINGYIRFGRLEEAQNLF 258
           +  G A N   +E++ +   M+  GI   D   +  + +C+++        R  E     
Sbjct: 498 LTVGLAQNLEEEEAVCMLKRMRLHGITPDDVSFSTAINACSNI--------RATETGKQI 549

Query: 259 DTVPVRDEIS-----WTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELF 313
             + ++  I       +S+ID Y   G V ++  +F  +     V   A+I+G VQN   
Sbjct: 550 HCLAIKYGICSNHAVGSSLIDLYSKHGDVESSRKIFAQVDASSIVPINALIAGFVQNNNE 609

Query: 314 VEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTES-ESDLILENC 372
            EA  LF ++   G+ P + TFS +      + N  +G+Q+HC  +K+     D +L   
Sbjct: 610 DEAIQLFQQVLKDGLKPSSVTFSSILSGCSGSLNSAIGKQVHCYTLKSGVLYDDTLLGVS 669

Query: 373 LISMYAKCGVIDNAYNIFSNMVS-RDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHP 431
           L  +Y K  ++++A  + + M   ++L  W +++ G++ +G  + +L  F  M       
Sbjct: 670 LAGIYLKSKMLEDANKLLTEMPDHKNLFEWTAIISGYAQNGYGDHSLVSFWRMRHCNVRS 729

Query: 432 NSVTFLGILSACSHAGLVSRGWELFNAM----FDVYKIQPGPEHYVSMINLLGRAGKIKE 487
           +  TF  +L ACS     + G E+   +    F  Y+         ++I++  + G +  
Sbjct: 730 DEATFASVLKACSDVTAFADGKEIHGLITKSGFGSYETATS-----ALIDMYSKCGDVIS 784

Query: 488 AEEFVLRLPFEPDHRIWGALL 508
           + E    L  + D   W +++
Sbjct: 785 SFEAFKELKNKQDIMPWNSMI 805



 Score =  112 bits (281), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 65/241 (26%), Positives = 115/241 (47%), Gaps = 35/241 (14%)

Query: 240 SMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGY----------------------- 276
           ++++ Y + G +  A+ +FD +   D I W+SMI  Y                       
Sbjct: 198 ALVDMYAKCGDVPNARRVFDGIACPDTICWSSMIACYHRVGCYQEALALFSRMDKMGSAP 257

Query: 277 ------------LSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMR 324
                        S G++ +A  L   MP    VAW A+ISG  Q+ L      L+ +MR
Sbjct: 258 DQVTLVTIISTLASSGRLDHATALLKKMPTPSTVAWNAVISGHAQSGLEFNVLGLYKDMR 317

Query: 325 AHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVID 384
           + G+ P  +TF+ +  AA        G+Q+H   +    ++++ + + LI++YAKCG   
Sbjct: 318 SWGLWPTRSTFASMLSAAANMKAFVEGQQMHAAAVMHGLDANVFVGSSLINLYAKCGCPS 377

Query: 385 NAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACS 444
           +A N+F     +++V WN+M+ GF  + L  E +++F+ M+      +  TF+ IL AC+
Sbjct: 378 DAKNVFDLSCEKNIVMWNAMLTGFVQNELPEEAIRMFQYMMRYTLQTDEFTFVSILGACT 437

Query: 445 H 445
           +
Sbjct: 438 Y 438



 Score = 82.4 bits (202), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 77/294 (26%), Positives = 124/294 (42%), Gaps = 29/294 (9%)

Query: 271 SMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMR-AHGVP 329
           S+++ Y   G+V  A+       +R + A ++++S   ++    +    F  +R   G  
Sbjct: 96  SLVELYCKSGRVGYAWSALGYAGERASGAASSLLSCHARSGSPGDVLGAFRYIRCTAGGR 155

Query: 330 PLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNI 389
           P     +V+  A      +  GRQ+HC ++K+   S +  E  L+ MYAKCG + NA  +
Sbjct: 156 PDQFGLAVVLSACSRVGVLAYGRQVHCDVVKSGFSSSVFCEAALVDMYAKCGDVPNARRV 215

Query: 390 FSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLV 449
           F  +   D + W+SM+  +   G   E L +F  M + G+ P+ VT + I+S  + +G +
Sbjct: 216 FDGIACPDTICWSSMIACYHRVGCYQEALALFSRMDKMGSAPDQVTLVTIISTLASSGRL 275

Query: 450 SRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWG---- 505
                L   M       P P        + G A   +   EF + L    D R WG    
Sbjct: 276 DHATALLKKM-------PTPSTVAWNAVISGHA---QSGLEFNV-LGLYKDMRSWGLWPT 324

Query: 506 -----ALLGAC----GFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASG 550
                ++L A      F EG      HAA  +  LD  N      L N+YA  G
Sbjct: 325 RSTFASMLSAAANMKAFVEGQ---QMHAAAVMHGLDA-NVFVGSSLINLYAKCG 374



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 55/230 (23%), Positives = 98/230 (42%), Gaps = 26/230 (11%)

Query: 18  ITKYSKRG-FIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNV--- 73
           I  YSK G  I   +A  +L  +++++ +N+M+ GF +NG   EA  LF++M E  +   
Sbjct: 773 IDMYSKCGDVISSFEAFKELKNKQDIMPWNSMIVGFAKNGYADEALLLFQKMEELQIKPD 832

Query: 74  -VSWTAMICGLADAGRVCEARKLFEEMPE-----RNVVSWNSMVVGLIRNGELNEARKVF 127
            V++  ++     +G + E R  F  M +       +  +   +  L R G L EA++  
Sbjct: 833 EVTFLGVLIACTHSGLISEGRHFFGSMRKVYGLTPRLDHYACFIDLLGRGGHLQEAQEAI 892

Query: 128 NSMPIK-NVISWNAMIAGYVECCMMGE-------AIVLFEEMEERNVVTWTSMISGYCRA 179
           + +P + + + W    A Y+  C M +       A     E+E +   T+  + S +   
Sbjct: 893 DQLPFRPDGVVW----ATYLAACRMHKDEERGKIAARKLVELEPQYSSTYVLLSSLHAAT 948

Query: 180 GEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDN 229
           G   E       M  K V    A   G +W     ++ L  ++ K   DN
Sbjct: 949 GNWAEAKVTRESMREKGV----AKFPGCSWITVGNKTSLFLVQDKYHPDN 994


>gi|108862877|gb|ABA99065.2| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 491

 Score =  280 bits (717), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 165/497 (33%), Positives = 252/497 (50%), Gaps = 45/497 (9%)

Query: 99  MPERNVVSWNSMVVGLIRNGELNEARKVFNSM----PIKNVISWNAMIAGYVECCMMGEA 154
           MP R+  +++ ++  L   G +   R V + +     +++    NA+I  Y +     +A
Sbjct: 1   MPRRDSFTYSFLIKALSAAG-VAPVRAVHSHVVKLGSVEDTFVGNALIDAYSKNGGFSDA 59

Query: 155 IVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHK 214
             +F+EM ER+VV+W + ++   R GE+     LF  MP K+ VSW              
Sbjct: 60  RKVFDEMPERDVVSWNTAMAAMVREGELAGVRKLFDEMPEKDTVSW-------------- 105

Query: 215 ESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMID 274
                                   N++++GY + G +E A  LF  +P R+ +SW++M+ 
Sbjct: 106 ------------------------NTILDGYTKAGEVEAAFELFQRMPERNVVSWSTMVS 141

Query: 275 GYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNAT 334
           GY   G +  A  +F  MP ++ V WT M+S   Q  L  EA  LF +M+   V    A 
Sbjct: 142 GYCKKGDLEMARVIFDKMPSKNLVTWTIMVSACAQKGLVDEAGKLFAQMKEASVELDVAA 201

Query: 335 FSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIF-SNM 393
              +  A   + ++ LG++IH  + K        + N LI M+ KCG ++ A  +F +  
Sbjct: 202 VVSILAACAESGSLSLGKRIHRYVRKRNLGRSTHVCNALIDMFCKCGCVNRADYVFDTET 261

Query: 394 VSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGW 453
           V +D VSWNS++ GF+ HG  ++ L++F  M + G +P++VT + +LSAC+H G V  G 
Sbjct: 262 VQKDSVSWNSIIGGFAMHGHGDKALELFAQMKQQGFNPDAVTMINVLSACTHMGFVDEGR 321

Query: 454 ELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGF 513
             F+ M   Y I P  EHY  MI+LLGR G IKEA + +  +P+EP+  IWG+LL AC  
Sbjct: 322 RHFSNMERDYGIMPQIEHYGCMIDLLGRGGLIKEAVDLIKSMPWEPNEVIWGSLLSACRL 381

Query: 514 CEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGC 573
              N E AE A   L +L P NA  + VL NIYA +G+  +  K RM M   G +K  G 
Sbjct: 382 -HKNVEYAEIAVNELSKLQPSNAGNYAVLSNIYAEAGQWSDMAKARMQMKGTGSQKTAGS 440

Query: 574 SWLMRNGGIQMFLSGDK 590
           SW+  N     F  GD+
Sbjct: 441 SWVELNETFHEFTVGDR 457



 Score =  179 bits (454), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 112/368 (30%), Positives = 192/368 (52%), Gaps = 16/368 (4%)

Query: 37  MPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWT----AMICGLADAGRVCEA 92
           MP+R+  +Y+ ++      G ++  R +   + +   V  T    A+I   +  G   +A
Sbjct: 1   MPRRDSFTYSFLIKALSAAG-VAPVRAVHSHVVKLGSVEDTFVGNALIDAYSKNGGFSDA 59

Query: 93  RKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMG 152
           RK+F+EMPER+VVSWN+ +  ++R GEL   RK+F+ MP K+ +SWN ++ GY +   + 
Sbjct: 60  RKVFDEMPERDVVSWNTAMAAMVREGELAGVRKLFDEMPEKDTVSWNTILDGYTKAGEVE 119

Query: 153 EAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGF 212
            A  LF+ M ERNVV+W++M+SGYC+ G++E    +F +MP KN+V+WT M+   A  G 
Sbjct: 120 AAFELFQRMPERNVVSWSTMVSGYCKKGDLEMARVIFDKMPSKNLVTWTIMVSACAQKGL 179

Query: 213 HKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWT-- 270
             E+  LF +MK   +     +V +  S++      G L   + +   V  R+    T  
Sbjct: 180 VDEAGKLFAQMK---EASVELDVAAVVSILAACAESGSLSLGKRIHRYVRKRNLGRSTHV 236

Query: 271 --SMIDGYLSVGQVSNAYYLFHN-MPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHG 327
             ++ID +   G V+ A Y+F      +D+V+W ++I G   +    +A  LF +M+  G
Sbjct: 237 CNALIDMFCKCGCVNRADYVFDTETVQKDSVSWNSIIGGFAMHGHGDKALELFAQMKQQG 296

Query: 328 VPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILEN--CLISMYAKCGVIDN 385
             P   T   +  A      +D GR+ H   M+ +      +E+  C+I +  + G+I  
Sbjct: 297 FNPDAVTMINVLSACTHMGFVDEGRR-HFSNMERDYGIMPQIEHYGCMIDLLGRGGLIKE 355

Query: 386 AYNIFSNM 393
           A ++  +M
Sbjct: 356 AVDLIKSM 363



 Score =  159 bits (402), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 102/336 (30%), Positives = 169/336 (50%), Gaps = 51/336 (15%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWT 77
           I  YSK G   +A+ +F  MP+R+VVS+N  ++  ++ G L+  R+LF+EMPE++ VSW 
Sbjct: 47  IDAYSKNGGFSDARKVFDEMPERDVVSWNTAMAAMVREGELAGVRKLFDEMPEKDTVSWN 106

Query: 78  AMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVIS 137
            ++ G   AG V  A +LF+ MPERNVVSW++MV G  + G+L  AR +F+ MP KN+++
Sbjct: 107 TILDGYTKAGEVEAAFELFQRMPERNVVSWSTMVSGYCKKGDLEMARVIFDKMPSKNLVT 166

Query: 138 WNAMIAGYVECCMMGEAIVLFEEMEE---------------------------------- 163
           W  M++   +  ++ EA  LF +M+E                                  
Sbjct: 167 WTIMVSACAQKGLVDEAGKLFAQMKEASVELDVAAVVSILAACAESGSLSLGKRIHRYVR 226

Query: 164 -----RNVVTWTSMISGYCRAGEVEEG-YCLFRRMPRKNVVSWTAMIGGFAWNGFHKESL 217
                R+     ++I  +C+ G V    Y       +K+ VSW ++IGGFA +G   ++L
Sbjct: 227 KRNLGRSTHVCNALIDMFCKCGCVNRADYVFDTETVQKDSVSWNSIIGGFAMHGHGDKAL 286

Query: 218 LLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRD-----EIS-WTS 271
            LF +MK     G N +  +  ++++     G ++E +  F  +  RD     +I  +  
Sbjct: 287 ELFAQMK---QQGFNPDAVTMINVLSACTHMGFVDEGRRHFSNME-RDYGIMPQIEHYGC 342

Query: 272 MIDGYLSVGQVSNAYYLFHNMP-DRDAVAWTAMISG 306
           MID     G +  A  L  +MP + + V W +++S 
Sbjct: 343 MIDLLGRGGLIKEAVDLIKSMPWEPNEVIWGSLLSA 378


>gi|296088738|emb|CBI38188.3| unnamed protein product [Vitis vinifera]
          Length = 744

 Score =  280 bits (716), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 183/633 (28%), Positives = 311/633 (49%), Gaps = 55/633 (8%)

Query: 18  ITKYSKRGFIDEAKALFQ-----LMPQR-NVVSYNAMLSGFLQNGRLSEARRLFEEMPER 71
           + ++S+RGF  ++  L Q     + P   N  +Y   L   +Q    S  + L  E+ +R
Sbjct: 8   LIQFSRRGFSVQSAKLTQEFVGHVSPSEFNSHAYANALQDCIQKDEPSRGKGLHCEILKR 67

Query: 72  ----NVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVF 127
               ++ +W  ++     +  +C+A KLF+EMPERN +S+ +++ G   +    EA ++F
Sbjct: 68  GGCLDLFAWNILLNMYVKSDFLCDASKLFDEMPERNTISFVTLIQGYAESVRFLEAIELF 127

Query: 128 NSMPIK----NVISWNAMIAGYV--ECCMMGEAI--VLFEEMEERNVVTWTSMISGYCRA 179
             +  +    N   +  ++   V  +C  +G  I   +F+   E N    T++I  Y   
Sbjct: 128 VRLHREGHELNPFVFTTILKLLVSTDCGELGWGIHACIFKLGHESNAFVGTALIDAYSVC 187

Query: 180 GEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCN 239
           G V+    +F  +  K++VSWT M+  FA N   KE+L LF +M+ +    NN    S  
Sbjct: 188 GRVDVAREVFDGILYKDMVSWTGMVTCFAENDCFKEALKLFSQMRMVGFKPNNFTFASVF 247

Query: 240 SMINGYIRFGRLEEAQNLFDTVPVRDEISW---TSMIDGYLSVGQVSNAYYLFHNMPDRD 296
               G   F   +        +  R E+      +++D Y   G + +A   F  +P +D
Sbjct: 248 KACLGLEAFDVGKSVHGC--ALKSRYELDLYVGVALLDLYTKSGDIDDARRAFEEIPKKD 305

Query: 297 AVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHC 356
            + W+ MI+   Q++   EA  +F +MR   V P   TF+ +  A      ++LG QIHC
Sbjct: 306 VIPWSFMIARYAQSDQSKEAVEMFFQMRQALVLPNQFTFASVLQACATMEGLNLGNQIHC 365

Query: 357 VLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANE 416
            ++K    SD+ + N L+ +YAKCG ++N+  +F+    R+ V+WN++++G    G   +
Sbjct: 366 HVIKIGLHSDVFVSNALMDVYAKCGRMENSMELFAESPHRNDVTWNTVIVGHVQLGDGEK 425

Query: 417 TLKVFESMLESGTH-------------------------------PNSVTFLGILSACSH 445
            L++F +MLE                                   P+ +TF+G+LSAC++
Sbjct: 426 ALRLFLNMLEYRVQATEVTYSSALRACASLAALEPGLQIHSLTVKPDKLTFVGVLSACAN 485

Query: 446 AGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWG 505
           AGL+ +G   F +M   + I+P  EHY  M+ LLGR G + +A + +  +PF+P   +W 
Sbjct: 486 AGLLDQGQAYFTSMIQDHGIEPCIEHYTCMVWLLGRGGHLDKAVKLIDEIPFQPSVMVWR 545

Query: 506 ALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLK 565
           ALLGAC     + E+   +A+R+LE++P +   HV+L N+YA + R      +R +M  K
Sbjct: 546 ALLGAC-VIHNDIELGRISAQRVLEMEPQDKATHVLLSNMYATAKRWDNVASVRKNMKRK 604

Query: 566 GVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
           GV+K PG SW+   G +  F  GD    +V  I
Sbjct: 605 GVKKEPGLSWIESQGTVHSFTVGDTSHPEVRVI 637


>gi|413946224|gb|AFW78873.1| hypothetical protein ZEAMMB73_227843 [Zea mays]
          Length = 778

 Score =  280 bits (716), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 189/624 (30%), Positives = 316/624 (50%), Gaps = 57/624 (9%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPER----NV 73
           +T Y+  G   +A+ +F  MP R+VVS+N+++S  L NG L +A+R    M       NV
Sbjct: 161 VTFYAVCGRAADARRVFDEMPARDVVSWNSLVSALLTNGMLEDAKRAVVGMMRSGVPVNV 220

Query: 74  VSWTAMI--CGLA-DAGRVCEARKLFEEMPERNVVSWNSMVVGLI-RNGELNEARKVFNS 129
            S  +++  CG   D G       L  +    +VV+  + +V +  + G+L  +  VFN 
Sbjct: 221 ASLVSILPACGTERDEGFGLCVHGLVLKFGLNSVVNLGNALVDMYGKFGDLESSMHVFNG 280

Query: 130 MPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNV----VTWTSMIS-----GYCRAG 180
           M  KN +SWN+ I  +       + + +F  M E +V    VT +S++      GY   G
Sbjct: 281 MQEKNEVSWNSAIGCFAHAGFHEDVLEMFRLMSEHDVTPGSVTLSSLLPALVDLGYFHLG 340

Query: 181 EVEEGY------------------------------CLFRRMPRKNVVSWTAMIGGFAWN 210
           +   GY                               +F  +  +NVVSW AMI     N
Sbjct: 341 KELHGYSIRRAVESDIFIANTLMDMYAKFGCSEKASAIFENIEVRNVVSWNAMIANLTQN 400

Query: 211 GFHKESLLLFIEMK--GICDNGNNCN--VQSCNSMINGYIRFGRLEEAQNLFDTVPVRDE 266
           G   E+  L IEM+  G C N       + +C+ + +  ++ G+   A ++  ++ + D 
Sbjct: 401 GAEAEAFRLVIEMQKNGECPNSFTLVNLLPACSRVAS--VKMGKQIHAWSIRRSL-MSDL 457

Query: 267 ISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAH 326
               ++ID Y   GQ++ A Y+F +  ++D V++  +I G  Q++   E+ +LF +MR  
Sbjct: 458 FVSNALIDVYAKCGQLNLARYIF-DRSEKDGVSYNTLIVGYSQSQCCFESLHLFQQMRLA 516

Query: 327 GVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNA 386
           G+     +F     A    +    G++IH VL+K   +S   L N L+ +Y K G++D A
Sbjct: 517 GIEHDAVSFMGCLSACSNLSAFKQGKEIHGVLVKRLLDSHPFLANSLLDVYTKGGMLDTA 576

Query: 387 YNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHA 446
             IF+ +  +D+ SWN+M++G+  HG  +   ++F+ M + G   + V+++ +LS CSH 
Sbjct: 577 SKIFNRITQKDVASWNTMILGYGMHGQIDVAFELFDLMKDDGIEYDHVSYIAVLSVCSHG 636

Query: 447 GLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGA 506
           GLV RG + F+ M     I+P   HY  M++LLGRAG++ E+ E +  +PF  +  +WGA
Sbjct: 637 GLVDRGKKYFSQMI-AQNIKPQQMHYACMVDLLGRAGQLSESAEIIRNMPFRANSDVWGA 695

Query: 507 LLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKG 566
           LLG+C    G+ E+A  AA+ L EL P N+  + +L N+Y+ SG   E + ++  M  + 
Sbjct: 696 LLGSCRI-HGDIELARLAAEHLFELKPENSGYYTLLRNMYSESGMWNEANGVKKLMKSRK 754

Query: 567 VRKVPGCSWLMRNGGIQMFLSGDK 590
           V+K P  SW+     +Q FL GD+
Sbjct: 755 VQKNPAYSWVQSGNKLQAFLVGDE 778



 Score =  178 bits (451), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 132/462 (28%), Positives = 228/462 (49%), Gaps = 19/462 (4%)

Query: 72  NVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMP 131
           +V +   ++   A  GR  +AR++F+EMP R+VVSWNS+V  L+ NG L +A++    M 
Sbjct: 153 DVFAGNTLVTFYAVCGRAADARRVFDEMPARDVVSWNSLVSALLTNGMLEDAKRAVVGMM 212

Query: 132 IKNVISWNAMIAGYVECC---------MMGEAIVLFEEMEERNVVTW-TSMISGYCRAGE 181
              V    A +   +  C         +    +VL  +    +VV    +++  Y + G+
Sbjct: 213 RSGVPVNVASLVSILPACGTERDEGFGLCVHGLVL--KFGLNSVVNLGNALVDMYGKFGD 270

Query: 182 VEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQS-CNS 240
           +E    +F  M  KN VSW + IG FA  GFH++ L +F  M        +  + S   +
Sbjct: 271 LESSMHVFNGMQEKNEVSWNSAIGCFAHAGFHEDVLEMFRLMSEHDVTPGSVTLSSLLPA 330

Query: 241 MIN-GYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVA 299
           +++ GY   G+     ++   V   D     +++D Y   G    A  +F N+  R+ V+
Sbjct: 331 LVDLGYFHLGKELHGYSIRRAVE-SDIFIANTLMDMYAKFGCSEKASAIFENIEVRNVVS 389

Query: 300 WTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLM 359
           W AMI+ L QN    EA  L +EM+ +G  P + T   L  A    A++ +G+QIH   +
Sbjct: 390 WNAMIANLTQNGAEAEAFRLVIEMQKNGECPNSFTLVNLLPACSRVASVKMGKQIHAWSI 449

Query: 360 KTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLK 419
           +    SDL + N LI +YAKCG ++ A  IF +   +D VS+N++++G+S      E+L 
Sbjct: 450 RRSLMSDLFVSNALIDVYAKCGQLNLARYIF-DRSEKDGVSYNTLIVGYSQSQCCFESLH 508

Query: 420 VFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLL 479
           +F+ M  +G   ++V+F+G LSACS+     +G E+   +     +   P    S++++ 
Sbjct: 509 LFQQMRLAGIEHDAVSFMGCLSACSNLSAFKQGKEIHGVLVKRL-LDSHPFLANSLLDVY 567

Query: 480 GRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIA 521
            + G +  A +   R+  + D   W  ++   G   G  ++A
Sbjct: 568 TKGGMLDTASKIFNRIT-QKDVASWNTMILGYGM-HGQIDVA 607



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 50/179 (27%), Positives = 85/179 (47%), Gaps = 6/179 (3%)

Query: 271 SMIDGYLSVGQVSNAYYLFHNMPDR--DAVAWTAMISGLVQNELFVEATYLFMEMRAHGV 328
           +++  Y ++  + +A+ +  + P R   A  W ++   L    L  EA  ++  M   GV
Sbjct: 52  ALLLSYAALPDIPSAHLILRHHPFRLRSAFLWNSLSRALASAALPCEALRVYNRMVRSGV 111

Query: 329 PPLNATFSVLFGAAGATANID---LGRQIHCV-LMKTESESDLILENCLISMYAKCGVID 384
            P + TF     AA A A  +    G ++H   L +    +D+   N L++ YA CG   
Sbjct: 112 RPDDRTFPFALHAAAAVAQAEHPAKGAELHAAALRRGLLLADVFAGNTLVTFYAVCGRAA 171

Query: 385 NAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSAC 443
           +A  +F  M +RD+VSWNS+V     +G+  +  +    M+ SG   N  + + IL AC
Sbjct: 172 DARRVFDEMPARDVVSWNSLVSALLTNGMLEDAKRAVVGMMRSGVPVNVASLVSILPAC 230


>gi|297597850|ref|NP_001044616.2| Os01g0815900 [Oryza sativa Japonica Group]
 gi|56785064|dbj|BAD82703.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|255673814|dbj|BAF06530.2| Os01g0815900 [Oryza sativa Japonica Group]
          Length = 566

 Score =  280 bits (716), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 160/532 (30%), Positives = 283/532 (53%), Gaps = 28/532 (5%)

Query: 61  ARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWN----SMVVGLIR 116
           A ++F+++       W  +I GLA +    +A   +++     +V  N     ++    R
Sbjct: 40  AHKVFDQIEAPTTFLWNILIRGLAQSDAPADAIAFYKKAQGGGMVPDNLTFPFILKACAR 99

Query: 117 NGELNEARKVFNSMP----IKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSM 172
              LNE  ++ N +     + ++   N++I  Y  C  +  A  +F+EM  ++VV+W S+
Sbjct: 100 INALNEGEQMHNHITKLGLLSDIFVSNSLIHLYAACGNLCYARSVFDEMVVKDVVSWNSL 159

Query: 173 ISGYCRAGEVEEGYCLFRRMPRK----------NVVSWTAMIGGFAWNGFHKESLLLFIE 222
           I GY +    ++   LF+ M  +           VVS    +G ++   +    ++ +IE
Sbjct: 160 ICGYSQCNRFKDILALFKLMQNEGVKADKVTMIKVVSACTRLGDYSMADY----MVRYIE 215

Query: 223 MKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQV 282
                D     +V   N++++ + R G+L+ A+ +F  + VR+ ++  +MI  Y     +
Sbjct: 216 -----DYCIEVDVYLGNTLVDYFGRRGQLQSAEKVFFNMKVRNIVTMNAMIAAYAKGQDI 270

Query: 283 SNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAA 342
            +A  +F  +P +D ++W++MISG  Q   F +A  +F +M+   V P     + +  + 
Sbjct: 271 VSARKIFDQIPKKDLISWSSMISGYSQANHFSDALEIFRQMQRAKVKPDAIVIASVVSSC 330

Query: 343 GATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWN 402
                +DLG+ +H  + +   ++D I+EN LI MY KCG    A  +F  M  +D +SWN
Sbjct: 331 AHLGALDLGKWVHEYVRRNNIKADTIMENSLIDMYMKCGSAKEALQVFKEMKEKDTLSWN 390

Query: 403 SMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDV 462
           S+++G +++G   E+L +F++ML  G  PN VTFLG+L AC++A LV  G + F +M  +
Sbjct: 391 SIIIGLANNGFEKESLNLFQAMLTEGFRPNGVTFLGVLIACANAKLVEEGLDHFESMKRL 450

Query: 463 YKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAE 522
           Y ++P  +HY  +++LLGRAG++++A  F+  +P +PD  +W  LLG+C    G+  IAE
Sbjct: 451 YSLEPQMKHYGCVVDLLGRAGQLEKALRFITEMPIDPDPVVWRILLGSCN-THGDVAIAE 509

Query: 523 HAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCS 574
              K+L EL+P N+  + +L N YA++ R  E   +R  M    VRK PGCS
Sbjct: 510 IVTKKLNELEPSNSGNYTLLSNAYASAHRWSEAMNVRQCMADTDVRKSPGCS 561



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 101/415 (24%), Positives = 173/415 (41%), Gaps = 85/415 (20%)

Query: 46  NAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMP----- 100
           N+++  +   G L  AR +F+EM  ++VVSW ++ICG +   R  +   LF+ M      
Sbjct: 126 NSLIHLYAACGNLCYARSVFDEMVVKDVVSWNSLICGYSQCNRFKDILALFKLMQNEGVK 185

Query: 101 ----------------------------------ERNVVSWNSMVVGLIRNGELNEARKV 126
                                             E +V   N++V    R G+L  A KV
Sbjct: 186 ADKVTMIKVVSACTRLGDYSMADYMVRYIEDYCIEVDVYLGNTLVDYFGRRGQLQSAEKV 245

Query: 127 FNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGY 186
           F +M ++N+++ NAMIA Y +   +  A  +F+++ ++++++W+SMISGY +A    +  
Sbjct: 246 FFNMKVRNIVTMNAMIAAYAKGQDIVSARKIFDQIPKKDLISWSSMISGYSQANHFSDAL 305

Query: 187 CLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSC----NSMI 242
            +FR+M R  V     +I     +  H  +L L    K + +     N+++     NS+I
Sbjct: 306 EIFRQMQRAKVKPDAIVIASVVSSCAHLGALDL---GKWVHEYVRRNNIKADTIMENSLI 362

Query: 243 NGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTA 302
           + Y++ G  +EA  +F  +  +D +SW S                               
Sbjct: 363 DMYMKCGSAKEALQVFKEMKEKDTLSWNS------------------------------- 391

Query: 303 MISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQ--IHCVLMK 360
           +I GL  N    E+  LF  M   G  P   TF    G   A AN  L  +   H   MK
Sbjct: 392 IIIGLANNGFEKESLNLFQAMLTEGFRPNGVTF---LGVLIACANAKLVEEGLDHFESMK 448

Query: 361 T--ESESDLILENCLISMYAKCGVIDNAYNIFSNM-VSRDLVSWNSMVMGFSHHG 412
                E  +    C++ +  + G ++ A    + M +  D V W  ++   + HG
Sbjct: 449 RLYSLEPQMKHYGCVVDLLGRAGQLEKALRFITEMPIDPDPVVWRILLGSCNTHG 503



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 76/289 (26%), Positives = 150/289 (51%), Gaps = 18/289 (6%)

Query: 12  VHLTSSITKY-SKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPE 70
           V+L +++  Y  +RG +  A+ +F  M  RN+V+ NAM++ + +   +  AR++F+++P+
Sbjct: 223 VYLGNTLVDYFGRRGQLQSAEKVFFNMKVRNIVTMNAMIAAYAKGQDIVSARKIFDQIPK 282

Query: 71  RNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRN-----GELNEARK 125
           ++++SW++MI G + A    +A ++F +M +R  V  +++V+  + +     G L+  + 
Sbjct: 283 KDLISWSSMISGYSQANHFSDALEIFRQM-QRAKVKPDAIVIASVVSSCAHLGALDLGKW 341

Query: 126 VFNSMPIKNV----ISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGE 181
           V   +   N+    I  N++I  Y++C    EA+ +F+EM+E++ ++W S+I G    G 
Sbjct: 342 VHEYVRRNNIKADTIMENSLIDMYMKCGSAKEALQVFKEMKEKDTLSWNSIIIGLANNGF 401

Query: 182 VEEGYCLFRRMP----RKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQS 237
            +E   LF+ M     R N V++  ++   A     +E L  F  MK +           
Sbjct: 402 EKESLNLFQAMLTEGFRPNGVTFLGVLIACANAKLVEEGLDHFESMKRLYSLEPQMKHYG 461

Query: 238 CNSMINGYIRFGRLEEAQNLFDTVPVR-DEISWTSMIDGYLSVGQVSNA 285
           C   + G  R G+LE+A      +P+  D + W  ++    + G V+ A
Sbjct: 462 CVVDLLG--RAGQLEKALRFITEMPIDPDPVVWRILLGSCNTHGDVAIA 508



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 51/196 (26%), Positives = 96/196 (48%), Gaps = 12/196 (6%)

Query: 11  VVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPE 70
           +V + + I  Y+K   I  A+ +F  +P+++++S+++M+SG+ Q    S+A  +F +M  
Sbjct: 254 IVTMNAMIAAYAKGQDIVSARKIFDQIPKKDLISWSSMISGYSQANHFSDALEIFRQMQR 313

Query: 71  RNV----VSWTAMICGLADAGRVCEARKLFEEMPERNV----VSWNSMVVGLIRNGELNE 122
             V    +   +++   A  G +   + + E +   N+    +  NS++   ++ G   E
Sbjct: 314 AKVKPDAIVIASVVSSCAHLGALDLGKWVHEYVRRNNIKADTIMENSLIDMYMKCGSAKE 373

Query: 123 ARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEER----NVVTWTSMISGYCR 178
           A +VF  M  K+ +SWN++I G        E++ LF+ M       N VT+  ++     
Sbjct: 374 ALQVFKEMKEKDTLSWNSIIIGLANNGFEKESLNLFQAMLTEGFRPNGVTFLGVLIACAN 433

Query: 179 AGEVEEGYCLFRRMPR 194
           A  VEEG   F  M R
Sbjct: 434 AKLVEEGLDHFESMKR 449



 Score = 62.4 bits (150), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 56/224 (25%), Positives = 105/224 (46%), Gaps = 20/224 (8%)

Query: 7   PKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAM-----LSGFLQNGRLSEA 61
           PK  ++  +S I+ YS+     +A  +F+ M QR  V  +A+     +S     G L   
Sbjct: 281 PKKDLISWSSMISGYSQANHFSDALEIFRQM-QRAKVKPDAIVIASVVSSCAHLGALDLG 339

Query: 62  RRLFEEMPERNVVSWTAMICGLAD----AGRVCEARKLFEEMPERNVVSWNSMVVGLIRN 117
           + + E +   N+ + T M   L D     G   EA ++F+EM E++ +SWNS+++GL  N
Sbjct: 340 KWVHEYVRRNNIKADTIMENSLIDMYMKCGSAKEALQVFKEMKEKDTLSWNSIIIGLANN 399

Query: 118 GELNEARKVFNSMPIK----NVISWNAMIAGYVECCMMGEAIVLFEEME-----ERNVVT 168
           G   E+  +F +M  +    N +++  ++       ++ E +  FE M+     E  +  
Sbjct: 400 GFEKESLNLFQAMLTEGFRPNGVTFLGVLIACANAKLVEEGLDHFESMKRLYSLEPQMKH 459

Query: 169 WTSMISGYCRAGEVEEGYCLFRRMP-RKNVVSWTAMIGGFAWNG 211
           +  ++    RAG++E+       MP   + V W  ++G    +G
Sbjct: 460 YGCVVDLLGRAGQLEKALRFITEMPIDPDPVVWRILLGSCNTHG 503



 Score = 52.8 bits (125), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 49/192 (25%), Positives = 85/192 (44%), Gaps = 19/192 (9%)

Query: 4   RNHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARR 63
           RN+ K+  +   S I  Y K G   EA  +F+ M +++ +S+N+++ G   NG   E+  
Sbjct: 348 RNNIKADTIMENSLIDMYMKCGSAKEALQVFKEMKEKDTLSWNSIIIGLANNGFEKESLN 407

Query: 64  LFEEMPER----NVVSWTAMICGLADAGRVCEARKLFEEMP-----ERNVVSWNSMVVGL 114
           LF+ M       N V++  ++   A+A  V E    FE M      E  +  +  +V  L
Sbjct: 408 LFQAMLTEGFRPNGVTFLGVLIACANAKLVEEGLDHFESMKRLYSLEPQMKHYGCVVDLL 467

Query: 115 IRNGELNEARKVFNSMPIK-NVISWNAMIAGYVECCMMGEAIVL------FEEMEERNVV 167
            R G+L +A +    MPI  + + W  ++     C   G+  +         E+E  N  
Sbjct: 468 GRAGQLEKALRFITEMPIDPDPVVWRILLGS---CNTHGDVAIAEIVTKKLNELEPSNSG 524

Query: 168 TWTSMISGYCRA 179
            +T + + Y  A
Sbjct: 525 NYTLLSNAYASA 536


>gi|302785946|ref|XP_002974744.1| hypothetical protein SELMODRAFT_31715 [Selaginella moellendorffii]
 gi|300157639|gb|EFJ24264.1| hypothetical protein SELMODRAFT_31715 [Selaginella moellendorffii]
          Length = 492

 Score =  280 bits (716), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 154/483 (31%), Positives = 258/483 (53%), Gaps = 14/483 (2%)

Query: 56  GRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLI 115
           G + EA+  FE MPERN  +W  +I   +  G + EAR +F+++PE++ V+WN+M+    
Sbjct: 1   GGIQEAKLAFERMPERNPYTWNFLIVACSRNGHLEEARMVFDKLPEKSAVTWNTMISCYA 60

Query: 116 RNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEM--EERNVVTWTSMI 173
           +   ++EA+ +F+S+P+K+V S N ++  Y +   + EA  +F+ +  EE   + W +++
Sbjct: 61  QKQCVSEAKCLFDSLPVKDVFSRNILLTAYAQSGNLAEAKEMFDSIPSEELTSICWNNIL 120

Query: 174 SGYCRAGEVEEGYCLFRRMPRKNVVSW----TAMIGGFAWNGFHKESLLLFIEMKGICDN 229
           + Y +  ++ E   +F RM  + V SW    TAM+  +A  G  +++ L+F EM      
Sbjct: 121 TAYSQNRQLPEAKSVFDRMTERTVESWNAMITAMVNAYAQEGRTRQAKLVFDEMV----- 175

Query: 230 GNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLF 289
             + +V S  +M+  Y+  G    A+NLF  +P RD ++W++M+  Y   G +  A  L 
Sbjct: 176 --DHDVVSWTTMLAAYLNNGHFTSAENLFALMPARDYLAWSTMVLAYAVKGNIELATKLH 233

Query: 290 HNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANID 349
             MP +DA +WTA+ISG  +     +A   F  M   G+ P   T      A  ++  + 
Sbjct: 234 EEMPVKDATSWTALISGHARAGHSKQALAYFKLMDLEGIEPDRITLMSALEACASSTALA 293

Query: 350 LGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFS 409
            G+ I         + D  +   L+SM+ KCG +D A  +F N+   ++VSW ++++ ++
Sbjct: 294 EGKTIFEGAAGRGLDRDTFVGTALVSMFGKCGRLDQARALFDNLPLPNVVSWTNIIVAYA 353

Query: 410 HHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGP 469
             G  +   ++F  M   G  PN +TF  +L+ACSH GL+      F  M     I P  
Sbjct: 354 QSGERSLAAEMFNCMDLQGEQPNWLTFSTVLAACSHGGLLEDARCYFLRMIGDNSIDPVV 413

Query: 470 EHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLL 529
           EHY  +++LLGR+G++   E+ V  +PFE D   W A+LGAC    G+ E     AK+LL
Sbjct: 414 EHYRCLVDLLGRSGQLDRMEDLVNEMPFEGDEVSWTAVLGACSL-HGDTERGGRIAKQLL 472

Query: 530 ELD 532
           E+D
Sbjct: 473 EMD 475



 Score =  177 bits (449), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 117/435 (26%), Positives = 213/435 (48%), Gaps = 21/435 (4%)

Query: 7   PKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFE 66
           P+   V   + I+ Y+++  + EAK LF  +P ++V S N +L+ + Q+G L+EA+ +F+
Sbjct: 45  PEKSAVTWNTMISCYAQKQCVSEAKCLFDSLPVKDVFSRNILLTAYAQSGNLAEAKEMFD 104

Query: 67  EMPERNVVS--WTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLI----RNGEL 120
            +P   + S  W  ++   +   ++ EA+ +F+ M ER V SWN+M+  ++    + G  
Sbjct: 105 SIPSEELTSICWNNILTAYSQNRQLPEAKSVFDRMTERTVESWNAMITAMVNAYAQEGRT 164

Query: 121 NEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAG 180
            +A+ VF+ M   +V+SW  M+A Y+       A  LF  M  R+ + W++M+  Y   G
Sbjct: 165 RQAKLVFDEMVDHDVVSWTTMLAAYLNNGHFTSAENLFALMPARDYLAWSTMVLAYAVKG 224

Query: 181 EVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLF--IEMKGICDNGNNCNVQSC 238
            +E    L   MP K+  SWTA+I G A  G  K++L  F  ++++GI       +  + 
Sbjct: 225 NIELATKLHEEMPVKDATSWTALISGHARAGHSKQALAYFKLMDLEGI-----EPDRITL 279

Query: 239 NSMINGYIRFGRLEEAQNLFDTVP----VRDEISWTSMIDGYLSVGQVSNAYYLFHNMPD 294
            S +        L E + +F+        RD    T+++  +   G++  A  LF N+P 
Sbjct: 280 MSALEACASSTALAEGKTIFEGAAGRGLDRDTFVGTALVSMFGKCGRLDQARALFDNLPL 339

Query: 295 RDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQI 354
            + V+WT +I    Q+     A  +F  M   G  P   TFS +  A      ++  R  
Sbjct: 340 PNVVSWTNIIVAYAQSGERSLAAEMFNCMDLQGEQPNWLTFSTVLAACSHGGLLEDAR-C 398

Query: 355 HCVLMKTESESDLILEN--CLISMYAKCGVIDNAYNIFSNM-VSRDLVSWNSMVMGFSHH 411
           + + M  ++  D ++E+  CL+ +  + G +D   ++ + M    D VSW +++   S H
Sbjct: 399 YFLRMIGDNSIDPVVEHYRCLVDLLGRSGQLDRMEDLVNEMPFEGDEVSWTAVLGACSLH 458

Query: 412 GLANETLKVFESMLE 426
           G      ++ + +LE
Sbjct: 459 GDTERGGRIAKQLLE 473


>gi|297822535|ref|XP_002879150.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297324989|gb|EFH55409.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 872

 Score =  280 bits (716), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 189/627 (30%), Positives = 310/627 (49%), Gaps = 57/627 (9%)

Query: 15  TSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPER--- 71
           TS +  Y K     + + +F  M +RNVV++  ++SG+ +N    E   LF  M +    
Sbjct: 136 TSLVDTYMKGSNFKDGRNVFDEMKERNVVTWTTLISGYARNSLNEEVLTLFMRMQDEGTQ 195

Query: 72  -NVVSWTAMICGLAD-----------------------------------AGRVCEARKL 95
            N  ++ A +  LA+                                    G V +AR L
Sbjct: 196 PNSFTFAAALGVLAEEGVGGRGLQVHTVVVKNGLDKTIPVSNSLINLYLKCGNVRKARIL 255

Query: 96  FEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAI 155
           F++   ++VV+WNSM+ G   NG   EA  +F SM + +V    +  A  ++ C   + +
Sbjct: 256 FDKTEVKSVVTWNSMISGYAANGLDLEALGMFYSMRLNHVRLSESSFASIIKLCANLKEL 315

Query: 156 VLFEEME----------ERNVVTWTSMISGYCRAGEVEEGYCLFRRMP-RKNVVSWTAMI 204
              E++           ++N+   T+++  Y +   + +   LF+      NVVSWTAMI
Sbjct: 316 RFTEQLHCSVVKYGFVFDQNI--RTALMVAYSKCMAMLDALRLFKETGFLGNVVSWTAMI 373

Query: 205 GGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVR 264
            GF  N   +E++ LF EMK     G   N  + + ++         E    +  T   R
Sbjct: 374 SGFLQNDGKEEAVGLFSEMK---RKGVRPNEFTYSVILTALPVISPSEVHAQVVKTNYER 430

Query: 265 DEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMR 324
                T+++D Y+ +G+V  A  +F  + ++D VAW+AM++G  Q      A  +F E+ 
Sbjct: 431 SSTVGTALLDAYVKLGKVDEAAKVFSGIDNKDIVAWSAMLAGYAQAGETEAAIKIFSELT 490

Query: 325 AHGVPPLNATFSVLFGA-AGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVI 383
             GV P   TFS +    A  TA++  G+Q H   +K+  +S L + + L++MYAK G I
Sbjct: 491 KGGVKPNEFTFSSILNVCAATTASMGQGKQFHGFAIKSRLDSSLCVSSALLTMYAKKGHI 550

Query: 384 DNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSAC 443
           ++A  +F     +DLVSWNSM+ G++ HG A + L VF+ M +     +SVTF+G+ +AC
Sbjct: 551 ESAEEVFKRQREKDLVSWNSMISGYAQHGQAMKALDVFKEMKKRKVKMDSVTFIGVFAAC 610

Query: 444 SHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRI 503
           +HAGLV  G + F+ M    KI P  EH   M++L  RAG++++A + +  +P      I
Sbjct: 611 THAGLVEEGEKYFDIMVRDCKIAPTKEHNSCMVDLYSRAGQLEKAMKVIDNMPNLAGSTI 670

Query: 504 WGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMG 563
           W  +L AC       E+   AA++++ + P ++ A+V+L N+YA SG   E  K+R  M 
Sbjct: 671 WRTILAACR-VHKKTELGRLAAEKIIAMIPEDSAAYVLLSNMYAESGDWQERAKVRKLMN 729

Query: 564 LKGVRKVPGCSWLMRNGGIQMFLSGDK 590
            + V+K PG SW+        FL+GD+
Sbjct: 730 ERNVKKEPGYSWIEVKNKTYAFLAGDR 756



 Score =  173 bits (438), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 154/601 (25%), Positives = 266/601 (44%), Gaps = 75/601 (12%)

Query: 30  AKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPE----------RNVVSWTAM 79
           A  LF   P R+  SY ++L GF ++GR  EA RLF  +             +V+  +A 
Sbjct: 50  AHNLFDKSPDRDRESYTSLLFGFSRDGRTQEATRLFLNIQHLGMEMDCSIFSSVLKVSAT 109

Query: 80  IC---------------GLADAGRVC--------------EARKLFEEMPERNVVSWNSM 110
           +C               G  D   V               + R +F+EM ERNVV+W ++
Sbjct: 110 LCDELFGRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRNVFDEMKERNVVTWTTL 169

Query: 111 VVGLIRNGELNEARKVFNSMPIK----NVISWNAMIAGYVECCMMGEAI----VLFEEME 162
           + G  RN    E   +F  M  +    N  ++ A +    E  + G  +    V+ +   
Sbjct: 170 ISGYARNSLNEEVLTLFMRMQDEGTQPNSFTFAAALGVLAEEGVGGRGLQVHTVVVKNGL 229

Query: 163 ERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIE 222
           ++ +    S+I+ Y + G V +   LF +   K+VV+W +MI G+A NG   E+L +F  
Sbjct: 230 DKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANGLDLEALGMFYS 289

Query: 223 MKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVP----VRDEISWTSMIDGYLS 278
           M+    N    +  S  S+I        L   + L  +V     V D+   T+++  Y  
Sbjct: 290 MRL---NHVRLSESSFASIIKLCANLKELRFTEQLHCSVVKYGFVFDQNIRTALMVAYSK 346

Query: 279 VGQVSNAYYLFHNMPDR-DAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSV 337
              + +A  LF       + V+WTAMISG +QN+   EA  LF EM+  GV P   T+SV
Sbjct: 347 CMAMLDALRLFKETGFLGNVVSWTAMISGFLQNDGKEEAVGLFSEMKRKGVRPNEFTYSV 406

Query: 338 LFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRD 397
           +  A    +      ++H  ++KT  E    +   L+  Y K G +D A  +FS + ++D
Sbjct: 407 ILTALPVIS----PSEVHAQVVKTNYERSSTVGTALLDAYVKLGKVDEAAKVFSGIDNKD 462

Query: 398 LVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFN 457
           +V+W++M+ G++  G     +K+F  + + G  PN  TF  IL+ C+         + F+
Sbjct: 463 IVAWSAMLAGYAQAGETEAAIKIFSELTKGGVKPNEFTFSSILNVCAATTASMGQGKQFH 522

Query: 458 AMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCE-G 516
                 ++        +++ +  + G I+ AEE V +   E D   W +++   G+ + G
Sbjct: 523 GFAIKSRLDSSLCVSSALLTMYAKKGHIESAEE-VFKRQREKDLVSWNSMIS--GYAQHG 579

Query: 517 NA----EIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRH--VEEHKLRMDMGLKGVRKV 570
            A    ++ +   KR +++D       V    ++AA      VEE +   D+ ++  +  
Sbjct: 580 QAMKALDVFKEMKKRKVKMDS------VTFIGVFAACTHAGLVEEGEKYFDIMVRDCKIA 633

Query: 571 P 571
           P
Sbjct: 634 P 634



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 102/436 (23%), Positives = 183/436 (41%), Gaps = 87/436 (19%)

Query: 82  GLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMP---------- 131
           G A + R+  A  LF++ P+R+  S+ S++ G  R+G   EA ++F ++           
Sbjct: 40  GAASSSRLYYAHNLFDKSPDRDRESYTSLLFGFSRDGRTQEATRLFLNIQHLGMEMDCSI 99

Query: 132 IKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRR 191
             +V+  +A +   +    +    + F  +++  V   TS++  Y +    ++G  +F  
Sbjct: 100 FSSVLKVSATLCDELFGRQLHCQCIKFGFLDD--VSVGTSLVDTYMKGSNFKDGRNVFDE 157

Query: 192 MPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKG-------------------------- 225
           M  +NVV+WT +I G+A N  ++E L LF+ M+                           
Sbjct: 158 MKERNVVTWTTLISGYARNSLNEEVLTLFMRMQDEGTQPNSFTFAAALGVLAEEGVGGRG 217

Query: 226 ------ICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSV 279
                 +  NG +  +   NS+IN Y++ G + +A+ LFD   V+  ++W SMI GY + 
Sbjct: 218 LQVHTVVVKNGLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAA- 276

Query: 280 GQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLF 339
                                         N L +EA  +F  MR + V    ++F+ + 
Sbjct: 277 ------------------------------NGLDLEALGMFYSMRLNHVRLSESSFASII 306

Query: 340 GAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNM-VSRDL 398
                   +    Q+HC ++K     D  +   L+  Y+KC  + +A  +F       ++
Sbjct: 307 KLCANLKELRFTEQLHCSVVKYGFVFDQNIRTALMVAYSKCMAMLDALRLFKETGFLGNV 366

Query: 399 VSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACS-------HAGLVSR 451
           VSW +M+ GF  +    E + +F  M   G  PN  T+  IL+A         HA +V  
Sbjct: 367 VSWTAMISGFLQNDGKEEAVGLFSEMKRKGVRPNEFTYSVILTALPVISPSEVHAQVVKT 426

Query: 452 GWE----LFNAMFDVY 463
            +E    +  A+ D Y
Sbjct: 427 NYERSSTVGTALLDAY 442



 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 59/218 (27%), Positives = 109/218 (50%), Gaps = 9/218 (4%)

Query: 275 GYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNAT 334
           G  S  ++  A+ LF   PDRD  ++T+++ G  ++    EAT LF+ ++  G+    + 
Sbjct: 40  GAASSSRLYYAHNLFDKSPDRDRESYTSLLFGFSRDGRTQEATRLFLNIQHLGMEMDCSI 99

Query: 335 FSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMV 394
           FS +   +    +   GRQ+HC  +K     D+ +   L+  Y K     +  N+F  M 
Sbjct: 100 FSSVLKVSATLCDELFGRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRNVFDEMK 159

Query: 395 SRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWE 454
            R++V+W +++ G++ + L  E L +F  M + GT PNS TF   L   +  G+  RG +
Sbjct: 160 ERNVVTWTTLISGYARNSLNEEVLTLFMRMQDEGTQPNSFTFAAALGVLAEEGVGGRGLQ 219

Query: 455 LFNAMFDVYKIQPGPEHYV----SMINLLGRAGKIKEA 488
           +   +     ++ G +  +    S+INL  + G +++A
Sbjct: 220 VHTVV-----VKNGLDKTIPVSNSLINLYLKCGNVRKA 252


>gi|222629201|gb|EEE61333.1| hypothetical protein OsJ_15451 [Oryza sativa Japonica Group]
          Length = 1037

 Score =  280 bits (716), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 194/630 (30%), Positives = 308/630 (48%), Gaps = 58/630 (9%)

Query: 15  TSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEM------ 68
           +S I  Y+K G   +AK +F L  ++N+V +NAML+GF+QN    EA R+F+ M      
Sbjct: 374 SSLINLYAKCGCPSDAKNVFDLSCEKNIVMWNAMLTGFVQNELPEEAIRMFQYMMRYTLQ 433

Query: 69  -PERNVVS--------------------------------WTAMICGLADAGRVCEARKL 95
             E   VS                                  A +   +  G + +A+ L
Sbjct: 434 TDEFTFVSILGACTYLSSFYLGKQVHCVTIKNCMDISLFVANATLDMYSKYGAIGDAKAL 493

Query: 96  FEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAI 155
           F  +P ++ +SWN++ VGL +N E  EA  +   M +  +   +   +  +  C    A 
Sbjct: 494 FSLIPYKDSISWNALTVGLAQNLEEEEAVCMLKRMRLHGITPDDVSFSTAINACSNIRAT 553

Query: 156 VLFEEMEE--------RNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGF 207
              +++           N    +S+I  Y + G+VE    +F ++   ++V   A+I GF
Sbjct: 554 ETGKQIHCLAIKYGICSNHAVGSSLIDLYSKHGDVESSRKIFAQVDASSIVPINALIAGF 613

Query: 208 AWNGFHKESLLLFIEMKGICDNGNNCNVQS----CNSMINGYIRFGRLEEAQNLFDTVPV 263
             N    E++ LF ++       ++    S    C+  +N  I  G+      L   V  
Sbjct: 614 VQNNNEDEAIQLFQQVLKDGLKPSSVTFSSILSGCSGSLNSAI--GKQVHCYTLKSGVLY 671

Query: 264 RDEISWTSMIDGYLSVGQVSNAYYLFHNMPD-RDAVAWTAMISGLVQNELFVEATYLFME 322
            D +   S+   YL    + +A  L   MPD ++   WTA+ISG  QN     +   F  
Sbjct: 672 DDTLLGVSLAGIYLKSKMLEDANKLLTEMPDHKNLFEWTAIISGYAQNGYGDHSLVSFWR 731

Query: 323 MRAHGVPPLNATF-SVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCG 381
           MR   V    ATF SVL   +  TA  D G++IH ++ K+   S     + LI MY+KCG
Sbjct: 732 MRHCNVRSDEATFASVLKACSDVTAFAD-GKEIHGLITKSGFGSYETATSALIDMYSKCG 790

Query: 382 VIDNAYNIFSNMVSR-DLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGIL 440
            + +++  F  + ++ D++ WNSM++GF+ +G A+E L +F+ M E    P+ VTFLG+L
Sbjct: 791 DVISSFEAFKELKNKQDIMPWNSMIVGFAKNGYADEALLLFQKMEELQIKPDEVTFLGVL 850

Query: 441 SACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPD 500
            AC+H+GL+S G   F +M  VY + P  +HY   I+LLGR G ++EA+E + +LPF PD
Sbjct: 851 IACTHSGLISEGRHFFGSMRKVYGLTPRLDHYACFIDLLGRGGHLQEAQEAIDQLPFRPD 910

Query: 501 HRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRM 560
             +W   L AC     + E  + AA++L+EL+P  +  +V+L +++AA+G   E    R 
Sbjct: 911 GVVWATYLAACRM-HKDEERGKIAARKLVELEPQYSSTYVLLSSLHAATGNWAEAKVTRE 969

Query: 561 DMGLKGVRKVPGCSWLMRNGGIQMFLSGDK 590
            M  KGV K PGCSW+       +FL  DK
Sbjct: 970 SMREKGVAKFPGCSWITVGNKTSLFLVQDK 999



 Score =  166 bits (420), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 119/450 (26%), Positives = 220/450 (48%), Gaps = 33/450 (7%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPE----RNV 73
           +  Y+K G +  A+ +F  +   + + +++M++ + + G   EA  LF  M +     + 
Sbjct: 210 VDMYAKCGDVPNARRVFDGIACPDTICWSSMIACYHRVGCYQEALALFSRMDKMGSAPDQ 269

Query: 74  VSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNG-ELN----------- 121
           V+   +I  LA +GR+  A  L ++MP  + V+WN+++ G  ++G E N           
Sbjct: 270 VTLVTIISTLASSGRLDHATALLKKMPTPSTVAWNAVISGHAQSGLEFNVLGLYKDMRSW 329

Query: 122 ---EARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCR 178
                R  F SM     +S  A +  +VE   M  A V+     + NV   +S+I+ Y +
Sbjct: 330 GLWPTRSTFASM-----LSAAANMKAFVEGQQMHAAAVM--HGLDANVFVGSSLINLYAK 382

Query: 179 AGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQS- 237
            G   +   +F     KN+V W AM+ GF  N   +E++ +F  M       +     S 
Sbjct: 383 CGCPSDAKNVFDLSCEKNIVMWNAMLTGFVQNELPEEAIRMFQYMMRYTLQTDEFTFVSI 442

Query: 238 ---CNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPD 294
              C  + + Y+  G+      + + + +   ++  + +D Y   G + +A  LF  +P 
Sbjct: 443 LGACTYLSSFYL--GKQVHCVTIKNCMDISLFVA-NATLDMYSKYGAIGDAKALFSLIPY 499

Query: 295 RDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQI 354
           +D+++W A+  GL QN    EA  +   MR HG+ P + +FS    A       + G+QI
Sbjct: 500 KDSISWNALTVGLAQNLEEEEAVCMLKRMRLHGITPDDVSFSTAINACSNIRATETGKQI 559

Query: 355 HCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLA 414
           HC+ +K    S+  + + LI +Y+K G ++++  IF+ + +  +V  N+++ GF  +   
Sbjct: 560 HCLAIKYGICSNHAVGSSLIDLYSKHGDVESSRKIFAQVDASSIVPINALIAGFVQNNNE 619

Query: 415 NETLKVFESMLESGTHPNSVTFLGILSACS 444
           +E +++F+ +L+ G  P+SVTF  ILS CS
Sbjct: 620 DEAIQLFQQVLKDGLKPSSVTFSSILSGCS 649



 Score =  150 bits (380), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 102/388 (26%), Positives = 189/388 (48%), Gaps = 12/388 (3%)

Query: 116 RNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEE----RNVVTWTS 171
           + G++  AR+VF+ +   + I W++MIA Y       EA+ LF  M++     + VT  +
Sbjct: 215 KCGDVPNARRVFDGIACPDTICWSSMIACYHRVGCYQEALALFSRMDKMGSAPDQVTLVT 274

Query: 172 MISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGN 231
           +IS    +G ++    L ++MP  + V+W A+I G A +G     L L+ +M+     G 
Sbjct: 275 IISTLASSGRLDHATALLKKMPTPSTVAWNAVISGHAQSGLEFNVLGLYKDMRSW---GL 331

Query: 232 NCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVR----DEISWTSMIDGYLSVGQVSNAYY 287
                +  SM++         E Q +     +     +    +S+I+ Y   G  S+A  
Sbjct: 332 WPTRSTFASMLSAAANMKAFVEGQQMHAAAVMHGLDANVFVGSSLINLYAKCGCPSDAKN 391

Query: 288 LFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATAN 347
           +F    +++ V W AM++G VQNEL  EA  +F  M  + +     TF  + GA    ++
Sbjct: 392 VFDLSCEKNIVMWNAMLTGFVQNELPEEAIRMFQYMMRYTLQTDEFTFVSILGACTYLSS 451

Query: 348 IDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMG 407
             LG+Q+HCV +K   +  L + N  + MY+K G I +A  +FS +  +D +SWN++ +G
Sbjct: 452 FYLGKQVHCVTIKNCMDISLFVANATLDMYSKYGAIGDAKALFSLIPYKDSISWNALTVG 511

Query: 408 FSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQP 467
            + +    E + + + M   G  P+ V+F   ++ACS+      G ++ + +   Y I  
Sbjct: 512 LAQNLEEEEAVCMLKRMRLHGITPDDVSFSTAINACSNIRATETGKQI-HCLAIKYGICS 570

Query: 468 GPEHYVSMINLLGRAGKIKEAEEFVLRL 495
                 S+I+L  + G ++ + +   ++
Sbjct: 571 NHAVGSSLIDLYSKHGDVESSRKIFAQV 598



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 126/561 (22%), Positives = 246/561 (43%), Gaps = 79/561 (14%)

Query: 12  VHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEM--- 68
           V L + I+  +  G +D A AL + MP  + V++NA++SG  Q+G       L+++M   
Sbjct: 270 VTLVTIISTLASSGRLDHATALLKKMPTPSTVAWNAVISGHAQSGLEFNVLGLYKDMRSW 329

Query: 69  ---PERNVVSWTAMICGLADAGRVCEARKLFEEMP----ERNVVSWNSMVVGLIRNGELN 121
              P R+  ++ +M+   A+     E +++         + NV   +S++    + G  +
Sbjct: 330 GLWPTRS--TFASMLSAAANMKAFVEGQQMHAAAVMHGLDANVFVGSSLINLYAKCGCPS 387

Query: 122 EARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEME----ERNVVTWTSMISG-- 175
           +A+ VF+    KN++ WNAM+ G+V+  +  EAI +F+ M     + +  T+ S++    
Sbjct: 388 DAKNVFDLSCEKNIVMWNAMLTGFVQNELPEEAIRMFQYMMRYTLQTDEFTFVSILGACT 447

Query: 176 ---------------------------------YCRAGEVEEGYCLFRRMPRKNVVSWTA 202
                                            Y + G + +   LF  +P K+ +SW A
Sbjct: 448 YLSSFYLGKQVHCVTIKNCMDISLFVANATLDMYSKYGAIGDAKALFSLIPYKDSISWNA 507

Query: 203 MIGGFAWNGFHKESLLLFIEMK--GIC--DNGNNCNVQSCNSMINGYIRFGRLEEAQNLF 258
           +  G A N   +E++ +   M+  GI   D   +  + +C+++        R  E     
Sbjct: 508 LTVGLAQNLEEEEAVCMLKRMRLHGITPDDVSFSTAINACSNI--------RATETGKQI 559

Query: 259 DTVPVRDEIS-----WTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELF 313
             + ++  I       +S+ID Y   G V ++  +F  +     V   A+I+G VQN   
Sbjct: 560 HCLAIKYGICSNHAVGSSLIDLYSKHGDVESSRKIFAQVDASSIVPINALIAGFVQNNNE 619

Query: 314 VEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTES-ESDLILENC 372
            EA  LF ++   G+ P + TFS +      + N  +G+Q+HC  +K+     D +L   
Sbjct: 620 DEAIQLFQQVLKDGLKPSSVTFSSILSGCSGSLNSAIGKQVHCYTLKSGVLYDDTLLGVS 679

Query: 373 LISMYAKCGVIDNAYNIFSNMVS-RDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHP 431
           L  +Y K  ++++A  + + M   ++L  W +++ G++ +G  + +L  F  M       
Sbjct: 680 LAGIYLKSKMLEDANKLLTEMPDHKNLFEWTAIISGYAQNGYGDHSLVSFWRMRHCNVRS 739

Query: 432 NSVTFLGILSACSHAGLVSRGWELFNAM----FDVYKIQPGPEHYVSMINLLGRAGKIKE 487
           +  TF  +L ACS     + G E+   +    F  Y+         ++I++  + G +  
Sbjct: 740 DEATFASVLKACSDVTAFADGKEIHGLITKSGFGSYETATS-----ALIDMYSKCGDVIS 794

Query: 488 AEEFVLRLPFEPDHRIWGALL 508
           + E    L  + D   W +++
Sbjct: 795 SFEAFKELKNKQDIMPWNSMI 815



 Score =  112 bits (281), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 65/241 (26%), Positives = 115/241 (47%), Gaps = 35/241 (14%)

Query: 240 SMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGY----------------------- 276
           ++++ Y + G +  A+ +FD +   D I W+SMI  Y                       
Sbjct: 208 ALVDMYAKCGDVPNARRVFDGIACPDTICWSSMIACYHRVGCYQEALALFSRMDKMGSAP 267

Query: 277 ------------LSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMR 324
                        S G++ +A  L   MP    VAW A+ISG  Q+ L      L+ +MR
Sbjct: 268 DQVTLVTIISTLASSGRLDHATALLKKMPTPSTVAWNAVISGHAQSGLEFNVLGLYKDMR 327

Query: 325 AHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVID 384
           + G+ P  +TF+ +  AA        G+Q+H   +    ++++ + + LI++YAKCG   
Sbjct: 328 SWGLWPTRSTFASMLSAAANMKAFVEGQQMHAAAVMHGLDANVFVGSSLINLYAKCGCPS 387

Query: 385 NAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACS 444
           +A N+F     +++V WN+M+ GF  + L  E +++F+ M+      +  TF+ IL AC+
Sbjct: 388 DAKNVFDLSCEKNIVMWNAMLTGFVQNELPEEAIRMFQYMMRYTLQTDEFTFVSILGACT 447

Query: 445 H 445
           +
Sbjct: 448 Y 448



 Score = 82.4 bits (202), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 50/190 (26%), Positives = 90/190 (47%), Gaps = 1/190 (0%)

Query: 271 SMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMR-AHGVP 329
           S+++ Y   G+V  A+       +R + A ++++S   ++    +    F  +R   G  
Sbjct: 106 SLVELYCKSGRVGYAWSALGYAGERASGAASSLLSCHARSGSPGDVLGAFRYIRCTAGGR 165

Query: 330 PLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNI 389
           P     +V+  A      +  GRQ+HC ++K+   S +  E  L+ MYAKCG + NA  +
Sbjct: 166 PDQFGLAVVLSACSRVGVLAYGRQVHCDVVKSGFSSSVFCEAALVDMYAKCGDVPNARRV 225

Query: 390 FSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLV 449
           F  +   D + W+SM+  +   G   E L +F  M + G+ P+ VT + I+S  + +G +
Sbjct: 226 FDGIACPDTICWSSMIACYHRVGCYQEALALFSRMDKMGSAPDQVTLVTIISTLASSGRL 285

Query: 450 SRGWELFNAM 459
                L   M
Sbjct: 286 DHATALLKKM 295



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 55/230 (23%), Positives = 98/230 (42%), Gaps = 26/230 (11%)

Query: 18   ITKYSKRG-FIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNV--- 73
            I  YSK G  I   +A  +L  +++++ +N+M+ GF +NG   EA  LF++M E  +   
Sbjct: 783  IDMYSKCGDVISSFEAFKELKNKQDIMPWNSMIVGFAKNGYADEALLLFQKMEELQIKPD 842

Query: 74   -VSWTAMICGLADAGRVCEARKLFEEMPE-----RNVVSWNSMVVGLIRNGELNEARKVF 127
             V++  ++     +G + E R  F  M +       +  +   +  L R G L EA++  
Sbjct: 843  EVTFLGVLIACTHSGLISEGRHFFGSMRKVYGLTPRLDHYACFIDLLGRGGHLQEAQEAI 902

Query: 128  NSMPIK-NVISWNAMIAGYVECCMMGE-------AIVLFEEMEERNVVTWTSMISGYCRA 179
            + +P + + + W    A Y+  C M +       A     E+E +   T+  + S +   
Sbjct: 903  DQLPFRPDGVVW----ATYLAACRMHKDEERGKIAARKLVELEPQYSSTYVLLSSLHAAT 958

Query: 180  GEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDN 229
            G   E       M  K V    A   G +W     ++ L  ++ K   DN
Sbjct: 959  GNWAEAKVTRESMREKGV----AKFPGCSWITVGNKTSLFLVQDKYHPDN 1004


>gi|297596302|ref|NP_001042337.2| Os01g0205200 [Oryza sativa Japonica Group]
 gi|56201494|dbj|BAD72991.1| pentatricopeptide repeat protein -like [Oryza sativa Japonica
           Group]
 gi|255672984|dbj|BAF04251.2| Os01g0205200 [Oryza sativa Japonica Group]
          Length = 658

 Score =  280 bits (716), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 176/571 (30%), Positives = 296/571 (51%), Gaps = 55/571 (9%)

Query: 46  NAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEM----PE 101
           NA++S + ++ R+ +A  +F+EMP+R+++SW ++I G A  G   +A +LF  M     E
Sbjct: 23  NALISFYAKSNRIEDALMVFDEMPQRDIISWNSIIGGCASNGLYDKAVELFVRMWLEGQE 82

Query: 102 RNVVSWNSMVVGLIRN-----GELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIV 156
            +  +  S++   +++     G +     V   + I      NA++  Y  C        
Sbjct: 83  LDSTTLLSVMPACVQSHYSFIGGVVHGYSVRTGL-ISETSLGNALLDMYSNCSDWRSTNK 141

Query: 157 LFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMP----RKNVVSWTAMIGGFAWNGF 212
           +F  ME++NVV+WT+MI+ Y RAG  ++   LF+ M     R +V + T+ +  FA N  
Sbjct: 142 IFRNMEQKNVVSWTAMITSYTRAGHFDKVAGLFQEMGLEGIRPDVFAITSALDAFAGN-- 199

Query: 213 HKESLLLFIEMKGIC-DNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTS 271
             ESL     + G    NG    +   N+++  Y++ G +EEA+ +FD V  +D ISW +
Sbjct: 200 --ESLKHGKSVHGYAIRNGIEEVLPVANALMEMYVKCGYMEEARFIFDHVTKKDTISWNT 257

Query: 272 MIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPL 331
           +I GY      + A+ LF+ M                            +++R + V   
Sbjct: 258 LIGGYSRSNLANEAFTLFNEM---------------------------LLQLRPNAV--- 287

Query: 332 NATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFS 391
             T + +  AA + ++++ GR++H   ++     D  + N L+ MY KCG +  A  +F 
Sbjct: 288 --TMACILPAAASLSSLERGREMHAYAVRRGYLEDNFVANALVDMYVKCGALLLARRLFD 345

Query: 392 NMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSR 451
            + +++L+SW  M+ G+  HG   + + +FE M  SG  P++ +F  IL ACSH+GL   
Sbjct: 346 MLTNKNLISWTIMIAGYGMHGRGRDAIALFEQMKGSGIQPDAGSFSAILYACSHSGLRDE 405

Query: 452 GWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGAC 511
           GW  FNAM + ++I+P  +HY  M++LL   G +KEA EF+  +P EPD  IW +LL  C
Sbjct: 406 GWRFFNAMRNEHRIEPKLKHYACMVDLLCHTGNLKEAYEFIETMPIEPDSSIWVSLLRGC 465

Query: 512 GFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVP 571
                N ++AE  A+ + EL+P N   +V+L NIYA + R     KL+  +G +G+R+  
Sbjct: 466 RI-HRNVKLAEKVAEMVFELEPENTGYYVLLANIYAEAERWEAVRKLKNKVGGRGLRENT 524

Query: 572 GCSWLMRNGGIQMFLSGDKIPAQ---VAEIL 599
           GCSW+   G   +F + ++   Q   +AE L
Sbjct: 525 GCSWIEVRGKAHIFFAENRNHPQGMRIAEFL 555



 Score =  111 bits (278), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 104/463 (22%), Positives = 193/463 (41%), Gaps = 59/463 (12%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEM--------- 68
           I+ Y+K   I++A  +F  MPQR+++S+N+++ G   NG   +A  LF  M         
Sbjct: 26  ISFYAKSNRIEDALMVFDEMPQRDIISWNSIIGGCASNGLYDKAVELFVRMWLEGQELDS 85

Query: 69  --------------------------PERNVVSWTAMICGLADAGRVC----EARKLFEE 98
                                         ++S T++   L D    C       K+F  
Sbjct: 86  TTLLSVMPACVQSHYSFIGGVVHGYSVRTGLISETSLGNALLDMYSNCSDWRSTNKIFRN 145

Query: 99  MPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIK----NVISWNAMIAGYV--ECCMMG 152
           M ++NVVSW +M+    R G  ++   +F  M ++    +V +  + +  +   E    G
Sbjct: 146 MEQKNVVSWTAMITSYTRAGHFDKVAGLFQEMGLEGIRPDVFAITSALDAFAGNESLKHG 205

Query: 153 EAI---VLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAW 209
           +++    +   +EE   V   +++  Y + G +EE   +F  + +K+ +SW  +IGG++ 
Sbjct: 206 KSVHGYAIRNGIEEVLPVA-NALMEMYVKCGYMEEARFIFDHVTKKDTISWNTLIGGYSR 264

Query: 210 NGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVR----D 265
           +    E+  LF EM  +     N    +C  ++        LE  + +      R    D
Sbjct: 265 SNLANEAFTLFNEM--LLQLRPNAVTMAC--ILPAAASLSSLERGREMHAYAVRRGYLED 320

Query: 266 EISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRA 325
                +++D Y+  G +  A  LF  + +++ ++WT MI+G   +    +A  LF +M+ 
Sbjct: 321 NFVANALVDMYVKCGALLLARRLFDMLTNKNLISWTIMIAGYGMHGRGRDAIALFEQMKG 380

Query: 326 HGVPPLNATFSVLFGAAGATANIDLG-RQIHCVLMKTESESDLILENCLISMYAKCGVID 384
            G+ P   +FS +  A   +   D G R  + +  +   E  L    C++ +    G + 
Sbjct: 381 SGIQPDAGSFSAILYACSHSGLRDEGWRFFNAMRNEHRIEPKLKHYACMVDLLCHTGNLK 440

Query: 385 NAYNIFSNM-VSRDLVSWNSMVMGFSHHGLANETLKVFESMLE 426
            AY     M +  D   W S++ G   H       KV E + E
Sbjct: 441 EAYEFIETMPIEPDSSIWVSLLRGCRIHRNVKLAEKVAEMVFE 483



 Score = 92.0 bits (227), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 78/330 (23%), Positives = 145/330 (43%), Gaps = 36/330 (10%)

Query: 4   RNHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMP----QRNVVSYNAMLSGFLQNGRLS 59
           RN  +  VV  T+ IT Y++ G  D+   LFQ M     + +V +  + L  F  N  L 
Sbjct: 144 RNMEQKNVVSWTAMITSYTRAGHFDKVAGLFQEMGLEGIRPDVFAITSALDAFAGNESLK 203

Query: 60  EARRLF---------EEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSM 110
             + +          E +P  N +    + CG  +     EAR +F+ + +++ +SWN++
Sbjct: 204 HGKSVHGYAIRNGIEEVLPVANALMEMYVKCGYME-----EARFIFDHVTKKDTISWNTL 258

Query: 111 VVGLIRNGELNEARKVFNSMPIK---NVISWNAMIAGYVECCMMG-----EAIVLFEEME 162
           + G  R+   NEA  +FN M ++   N ++   ++        +       A  +     
Sbjct: 259 IGGYSRSNLANEAFTLFNEMLLQLRPNAVTMACILPAAASLSSLERGREMHAYAVRRGYL 318

Query: 163 ERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIE 222
           E N V   +++  Y + G +     LF  +  KN++SWT MI G+  +G  ++++ LF +
Sbjct: 319 EDNFVA-NALVDMYVKCGALLLARRLFDMLTNKNLISWTIMIAGYGMHGRGRDAIALFEQ 377

Query: 223 MKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEIS-----WTSMIDGYL 277
           MKG   +G   +  S ++++      G  +E    F+ +     I      +  M+D   
Sbjct: 378 MKG---SGIQPDAGSFSAILYACSHSGLRDEGWRFFNAMRNEHRIEPKLKHYACMVDLLC 434

Query: 278 SVGQVSNAYYLFHNMP-DRDAVAWTAMISG 306
             G +  AY     MP + D+  W +++ G
Sbjct: 435 HTGNLKEAYEFIETMPIEPDSSIWVSLLRG 464



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 73/292 (25%), Positives = 121/292 (41%), Gaps = 45/292 (15%)

Query: 230 GNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLF 289
           G  C V  CN++I+ Y +  R+E+A  +FD +P RD ISW S+I G  S           
Sbjct: 16  GAQCAV--CNALISFYAKSNRIEDALMVFDEMPQRDIISWNSIIGGCAS----------- 62

Query: 290 HNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANID 349
                               N L+ +A  LF+ M   G    + T   +  A   +    
Sbjct: 63  --------------------NGLYDKAVELFVRMWLEGQELDSTTLLSVMPACVQSHYSF 102

Query: 350 LGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFS 409
           +G  +H   ++T   S+  L N L+ MY+ C    +   IF NM  +++VSW +M+  ++
Sbjct: 103 IGGVVHGYSVRTGLISETSLGNALLDMYSNCSDWRSTNKIFRNMEQKNVVSWTAMITSYT 162

Query: 410 HHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGP 469
             G  ++   +F+ M   G  P+       L A +    +  G  +       Y I+ G 
Sbjct: 163 RAGHFDKVAGLFQEMGLEGIRPDVFAITSALDAFAGNESLKHGKSVHG-----YAIRNGI 217

Query: 470 EHYVSMINLLG----RAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGN 517
           E  + + N L     + G ++EA  F+     + D   W  L+G  G+   N
Sbjct: 218 EEVLPVANALMEMYVKCGYMEEA-RFIFDHVTKKDTISWNTLIG--GYSRSN 266



 Score = 63.9 bits (154), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 42/129 (32%), Positives = 66/129 (51%), Gaps = 17/129 (13%)

Query: 351 GRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSH 410
           G  +H  L+K    +   + N LIS YAK   I++A  +F  M  RD++SWNS++ G + 
Sbjct: 3   GLVVHGYLVKYGFGAQCAVCNALISFYAKSNRIEDALMVFDEMPQRDIISWNSIIGGCAS 62

Query: 411 HGLANETLKVFESMLESGTHPNSVTFLGILSAC--SH--------------AGLVSRGWE 454
           +GL ++ +++F  M   G   +S T L ++ AC  SH               GL+S    
Sbjct: 63  NGLYDKAVELFVRMWLEGQELDSTTLLSVMPACVQSHYSFIGGVVHGYSVRTGLISET-S 121

Query: 455 LFNAMFDVY 463
           L NA+ D+Y
Sbjct: 122 LGNALLDMY 130


>gi|357154550|ref|XP_003576820.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Brachypodium distachyon]
          Length = 657

 Score =  280 bits (716), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 173/578 (29%), Positives = 295/578 (51%), Gaps = 26/578 (4%)

Query: 11  VVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPE 70
           + HL          GF D +    QL     + SY  + +G  ++G L  ARRLF+ +PE
Sbjct: 23  IQHLDQIHAHLVVHGFSDVSSVASQL-----IASYCTLSAGD-RDGGLCHARRLFDRIPE 76

Query: 71  RNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSM 130
            +   +  ++   +++    EA +L   + +R ++  N   +  +        R V +++
Sbjct: 77  PDRFMYNTLVRAYSNSDCPQEALRLHRGVLQRGILP-NEFTLPFVLKA-CTTVRAVEHAL 134

Query: 131 P----------IKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAG 180
                      ++ +   NA++  +     + ++   F EM +RNVV+W +MI GY +AG
Sbjct: 135 AAHGVVVKLGFVQQIFVANALLHFHASAGSLRDSRRFFGEMADRNVVSWNTMIGGYAQAG 194

Query: 181 EVEEGYCLFRRMPRK----NVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQ 236
           EV E   LF  M  +    +V +  +++   +  G  +   L+   M     +G+  +  
Sbjct: 195 EVSEACALFGEMRHQGLLADVFTLVSLLFACSSEGNLEVGRLVHCHM---LVSGSRVDRI 251

Query: 237 SCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRD 296
             N++++ Y + G L  A   FD +P+++ ++WTSM+      G V      F  MP+R+
Sbjct: 252 LGNALLDMYGKCGDLWMAHRCFDMMPIKNVVTWTSMLCAQAKHGSVDAVRDWFEQMPERN 311

Query: 297 AVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHC 356
            V+W AMIS  VQ     E   L+  MR+ G+ P   T + +  A G   ++  G+ IHC
Sbjct: 312 IVSWNAMISCYVQCGRLHETLDLYNRMRSLGITPDEFTLAGVLSACGQNGDLASGKMIHC 371

Query: 357 VLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANE 416
            +    ++  + L N L+ MYA+CG +D A  +F+ M +++++SWN ++   + HG A E
Sbjct: 372 YVRDNFNDPGVTLLNSLLDMYARCGQVDTAIGLFTEMPNKNVISWNVIIGALAMHGRAQE 431

Query: 417 TLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMI 476
           T+  F +M+     P+ +TF+G+LSACSH GL+  G   F AM  VY ++P  EHY  M+
Sbjct: 432 TVTFFRTMVSDAFSPDEITFVGLLSACSHGGLLEAGEYYFEAMARVYNVEPEVEHYGCMV 491

Query: 477 NLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNA 536
           +LLGR G + +A   +  +  +PD  +WGALLGAC    GN EI +   K+LLEL+ +  
Sbjct: 492 DLLGRRGHLAKAVNLIKDMSIKPDVVVWGALLGACRI-HGNVEIGKLVIKQLLELEGITG 550

Query: 537 PAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCS 574
              V++CN++  + +  +  KLR  M  +G +K  G S
Sbjct: 551 GLFVLICNLFYETNQWEDMKKLRKLMKEQGTKKDMGVS 588



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 62/203 (30%), Positives = 93/203 (45%), Gaps = 18/203 (8%)

Query: 7   PKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFE 66
           P   VV  TS +   +K G +D  +  F+ MP+RN+VS+NAM+S ++Q GRL E   L+ 
Sbjct: 277 PIKNVVTWTSMLCAQAKHGSVDAVRDWFEQMPERNIVSWNAMISCYVQCGRLHETLDLYN 336

Query: 67  EM------PERNVVSWTAMICG----LADAGRV-CEARKLFEEMPERNVVSWNSMVVGLI 115
            M      P+   ++     CG    LA    + C  R  F    +  V   NS++    
Sbjct: 337 RMRSLGITPDEFTLAGVLSACGQNGDLASGKMIHCYVRDNFN---DPGVTLLNSLLDMYA 393

Query: 116 RNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEER----NVVTWTS 171
           R G+++ A  +F  MP KNVISWN +I          E +  F  M       + +T+  
Sbjct: 394 RCGQVDTAIGLFTEMPNKNVISWNVIIGALAMHGRAQETVTFFRTMVSDAFSPDEITFVG 453

Query: 172 MISGYCRAGEVEEGYCLFRRMPR 194
           ++S     G +E G   F  M R
Sbjct: 454 LLSACSHGGLLEAGEYYFEAMAR 476


>gi|147819809|emb|CAN60740.1| hypothetical protein VITISV_030210 [Vitis vinifera]
          Length = 1033

 Score =  280 bits (716), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 185/586 (31%), Positives = 285/586 (48%), Gaps = 97/586 (16%)

Query: 72  NVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIR-------NGELNEAR 124
             +S   ++  L     +CE R++  +M + N+++    V  LI        +G L+ A 
Sbjct: 2   TAISTNPVVSVLDKCKSLCELRQIHAQMIKTNLLNHQFTVSRLIAFCSLSGVSGGLDYAS 61

Query: 125 KVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEM----------------------- 161
            VF+ +   N   + A+I G+ +     E+++L+  M                       
Sbjct: 62  SVFSRIQHPNSFIFFALIKGFSDTSNPVESLILYARMLSCLNYSSGVEFSIPSVLKACGK 121

Query: 162 -----EERNV-------------VTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAM 203
                E R V                 SM+  Y   GE+E    +F RMP ++VVSW   
Sbjct: 122 LLAFDEGRQVHGQVLKTHLWFDPFVGNSMVRMYIDFGEIELARRVFDRMPNRDVVSW--- 178

Query: 204 IGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPV 263
                                              NSMI GY++ G +E A  LFD +P 
Sbjct: 179 -----------------------------------NSMIAGYLKAGEIELASELFDEMPE 203

Query: 264 RDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEM 323
           RD +S  +MIDGY   G+   A  +F  M D+D V WT+MIS  VQN   ++A  LF EM
Sbjct: 204 RDLVSCNAMIDGYGKCGRCELAEKVFETMSDKDVVTWTSMISAYVQNRCPMKALDLFREM 263

Query: 324 RAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESE-SDLILENCLISMYAKCGV 382
            + G+ P       +  A      ++ G+ +H  +   + E S   + + LI MY+KCG 
Sbjct: 264 LSLGLRPDGPAIVSVLSAIADLGFVEEGKWLHAYVSMNKIELSSGFIGSALIDMYSKCGY 323

Query: 383 IDNAYNIFSNMV-SRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILS 441
           I+NAY++F ++   R++  WNSM+ G + HGLA E L +F  M      PN +TFLG+LS
Sbjct: 324 IENAYHVFRSISHRRNIGDWNSMISGLAIHGLAREALDIFVEMERMDIEPNEITFLGLLS 383

Query: 442 ACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDH 501
            CSH GLV  G   F +M + YKI P  +HY  MI+L GRAG++++A   +  +PFE D 
Sbjct: 384 TCSHGGLVEEGQFYFESMHEKYKIVPRIQHYGCMIDLFGRAGRLEDALGVIQNMPFEADL 443

Query: 502 RIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMD 561
             W A+L A     G+ EI + AA R +EL P ++ ++V+L NIYA +GR  +  K+R+ 
Sbjct: 444 LAWKAILSA-SMKHGHIEIGKSAALRAIELAPDDSSSYVLLSNIYAKAGRWDDVAKIRLM 502

Query: 562 MGLKGVRKVPGCSWLMRNGGIQMFLSGD--------KIPAQVAEIL 599
           M  +GV+K+ GCS ++ BG +  FL G         ++ A++AE++
Sbjct: 503 MRQRGVKKIAGCSSMLVBGKVHEFLXGKELDSSYSGQVLAKIAEVV 548



 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 102/329 (31%), Positives = 172/329 (52%), Gaps = 28/329 (8%)

Query: 6   HPKSLVVHL-------TSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRL 58
           H + L  HL        S +  Y   G I+ A+ +F  MP R+VVS+N+M++G+L+ G +
Sbjct: 132 HGQVLKTHLWFDPFVGNSMVRMYIDFGEIELARRVFDRMPNRDVVSWNSMIAGYLKAGEI 191

Query: 59  SEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNG 118
             A  LF+EMPER++VS  AMI G    GR   A K+FE M +++VV+W SM+   ++N 
Sbjct: 192 ELASELFDEMPERDLVSCNAMIDGYGKCGRCELAEKVFETMSDKDVVTWTSMISAYVQNR 251

Query: 119 ELNEARKVFNSM----------PIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVT 168
              +A  +F  M           I +V+S  A + G+VE      A V   ++E  +   
Sbjct: 252 CPMKALDLFREMLSLGLRPDGPAIVSVLSAIADL-GFVEEGKWLHAYVSMNKIELSSGFI 310

Query: 169 WTSMISGYCRAGEVEEGYCLFRRMP-RKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGIC 227
            +++I  Y + G +E  Y +FR +  R+N+  W +MI G A +G  +E+L +F+EM+ + 
Sbjct: 311 GSALIDMYSKCGYIENAYHVFRSISHRRNIGDWNSMISGLAIHGLAREALDIFVEMERMD 370

Query: 228 DNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEI-----SWTSMIDGYLSVGQV 282
              N        S  +     G +EE Q  F+++  + +I      +  MID +   G++
Sbjct: 371 IEPNEITFLGLLSTCS---HGGLVEEGQFYFESMHEKYKIVPRIQHYGCMIDLFGRAGRL 427

Query: 283 SNAYYLFHNMP-DRDAVAWTAMISGLVQN 310
            +A  +  NMP + D +AW A++S  +++
Sbjct: 428 EDALGVIQNMPFEADLLAWKAILSASMKH 456


>gi|115486527|ref|NP_001068407.1| Os11g0661000 [Oryza sativa Japonica Group]
 gi|108864631|gb|ABG22570.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113645629|dbj|BAF28770.1| Os11g0661000 [Oryza sativa Japonica Group]
 gi|215694601|dbj|BAG89792.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|215701272|dbj|BAG92696.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 610

 Score =  280 bits (716), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 161/466 (34%), Positives = 265/466 (56%), Gaps = 15/466 (3%)

Query: 140 AMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRM------- 192
           A+++ Y +  ++ +A+ LF+E   R++  ++S+++    +   E    + R M       
Sbjct: 43  ALVSAYAKSRLLPDALHLFDETPRRDIYIYSSLLTAVSHSASPELALPILRCMLSADALH 102

Query: 193 PRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLE 252
           P   V+S  A +  FA     +    L         NG++  V+S  S+++ Y + G  +
Sbjct: 103 PDHFVISSVASV--FARLRSRRLGRQLHAHFVVSPYNGDDV-VKS--SLVDMYCKCGSPD 157

Query: 253 EAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNEL 312
           + + +FD++  ++ + WT+++ GY S G+   A  LF +MP R+  AWTA+ISGLV    
Sbjct: 158 DGRKVFDSMSAKNSVVWTALVSGYASNGRSEEALQLFRSMPGRNLFAWTALISGLVNTGE 217

Query: 313 FVEATYLFMEMRAHGVPPLNA-TFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILEN 371
            V A  LF+EMR  GV   +A   S++ G +   A   LGRQ+H   M+    S++I+ N
Sbjct: 218 SVGAVELFVEMRRDGVRIDDAFVLSIVIGGSADLAAFVLGRQLHGSTMRLGFLSNMIVGN 277

Query: 372 CLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHP 431
            LI MY+KC  I +A  +F  +  RD++SW +MV+G + HG A E L +++ M+ +G  P
Sbjct: 278 ALIDMYSKCSDILSAREVFEGITFRDVISWTTMVVGEAQHGRAEEALALYDRMVLAGAKP 337

Query: 432 NSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEF 491
           N VTF+G++ ACSHAGLV +G +LF +M + Y I P  +HY   ++LL R+G + EAEE 
Sbjct: 338 NEVTFVGLIYACSHAGLVQKGRQLFESMKNEYGITPRLQHYTCYLDLLSRSGHLLEAEEL 397

Query: 492 VLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGR 551
           +  +P+EPD   WGALL AC   + +AE+    + +LLEL P ++  +++L N+YA +G+
Sbjct: 398 MTTMPYEPDEATWGALLSACTKYK-DAEMCIRISDKLLELRPKDSSTYILLSNVYAVNGK 456

Query: 552 HVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAE 597
                K+R  M    +RK PG SW+      ++F +G+ +P  V E
Sbjct: 457 WDSVAKVRKCMIGLEIRKEPGYSWIEAGREFRLFHAGE-VPLDVRE 501



 Score =  125 bits (313), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 84/275 (30%), Positives = 139/275 (50%), Gaps = 16/275 (5%)

Query: 15  TSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVV 74
           +S +  Y K G  D+ + +F  M  +N V + A++SG+  NGR  EA +LF  MP RN+ 
Sbjct: 144 SSLVDMYCKCGSPDDGRKVFDSMSAKNSVVWTALVSGYASNGRSEEALQLFRSMPGRNLF 203

Query: 75  SWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEA-----RKVFNS 129
           +WTA+I GL + G    A +LF EM    V   ++ V+ ++  G  + A     R++  S
Sbjct: 204 AWTALISGLVNTGESVGAVELFVEMRRDGVRIDDAFVLSIVIGGSADLAAFVLGRQLHGS 263

Query: 130 MP----IKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEG 185
                 + N+I  NA+I  Y +C  +  A  +FE +  R+V++WT+M+ G  + G  EE 
Sbjct: 264 TMRLGFLSNMIVGNALIDMYSKCSDILSAREVFEGITFRDVISWTTMVVGEAQHGRAEEA 323

Query: 186 YCLFRRM----PRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSM 241
             L+ RM     + N V++  +I   +  G  ++   LF  MK   + G    +Q     
Sbjct: 324 LALYDRMVLAGAKPNEVTFVGLIYACSHAGLVQKGRQLFESMKN--EYGITPRLQHYTCY 381

Query: 242 INGYIRFGRLEEAQNLFDTVPVR-DEISWTSMIDG 275
           ++   R G L EA+ L  T+P   DE +W +++  
Sbjct: 382 LDLLSRSGHLLEAEELMTTMPYEPDEATWGALLSA 416



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 96/408 (23%), Positives = 183/408 (44%), Gaps = 21/408 (5%)

Query: 47  AMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEM------- 99
           A++S + ++  L +A  LF+E P R++  +++++  ++ +     A  +   M       
Sbjct: 43  ALVSAYAKSRLLPDALHLFDETPRRDIYIYSSLLTAVSHSASPELALPILRCMLSADALH 102

Query: 100 PERNVVSWNSMVVGLIRNGELNE---ARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIV 156
           P+  V+S  + V   +R+  L     A  V +     +V+  ++++  Y +C    +   
Sbjct: 103 PDHFVISSVASVFARLRSRRLGRQLHAHFVVSPYNGDDVVK-SSLVDMYCKCGSPDDGRK 161

Query: 157 LFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKES 216
           +F+ M  +N V WT+++SGY   G  EE   LFR MP +N+ +WTA+I G    G    +
Sbjct: 162 VFDSMSAKNSVVWTALVSGYASNGRSEEALQLFRSMPGRNLFAWTALISGLVNTGESVGA 221

Query: 217 LLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVP----VRDEISWTSM 272
           + LF+EM+      ++  V S   +I G          + L  +      + + I   ++
Sbjct: 222 VELFVEMRRDGVRIDDAFVLSI--VIGGSADLAAFVLGRQLHGSTMRLGFLSNMIVGNAL 279

Query: 273 IDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLN 332
           ID Y     + +A  +F  +  RD ++WT M+ G  Q+    EA  L+  M   G  P  
Sbjct: 280 IDMYSKCSDILSAREVFEGITFRDVISWTTMVVGEAQHGRAEEALALYDRMVLAGAKPNE 339

Query: 333 ATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILEN--CLISMYAKCGVIDNAYNIF 390
            TF  L  A      +  GRQ+    MK E      L++  C + + ++ G +  A  + 
Sbjct: 340 VTFVGLIYACSHAGLVQKGRQLF-ESMKNEYGITPRLQHYTCYLDLLSRSGHLLEAEELM 398

Query: 391 SNM-VSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFL 437
           + M    D  +W +++   + +  A   +++ + +LE     +S   L
Sbjct: 399 TTMPYEPDEATWGALLSACTKYKDAEMCIRISDKLLELRPKDSSTYIL 446


>gi|449448675|ref|XP_004142091.1| PREDICTED: pentatricopeptide repeat-containing protein At5g42450,
           mitochondrial-like [Cucumis sativus]
          Length = 516

 Score =  280 bits (716), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 158/445 (35%), Positives = 253/445 (56%), Gaps = 36/445 (8%)

Query: 188 LFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEM-------------------KGICD 228
           L+ +MP  NVVS T  IG  A    H+E+L LF  M                   K + D
Sbjct: 51  LYDKMPHLNVVSATTAIGRCARQHQHEEALSLFSAMLVLNLRPNEFTFGTVIQSPKALGD 110

Query: 229 -------------NGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDG 275
                         G + NV   +++++ Y++ G +EEAQ  F+ + + + +S+TS+I G
Sbjct: 111 IHIGKQLHVCAIKTGLHSNVFVGSALLDLYVKVGVIEEAQRAFEDIKMPNVVSYTSLISG 170

Query: 276 YLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATF 335
           YL + ++ +A  +F  MP+R+ V+W +MI G  Q     +A +LF++M   G+ P  +TF
Sbjct: 171 YLKIERIRDALRVFDEMPERNVVSWNSMIGGFSQKGHNEDAVHLFIDMLREGILPTQSTF 230

Query: 336 SVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVS 395
                AA   A+I +GR  H   +K   + D+ + N LIS YAKCG ++++  +F+ ++ 
Sbjct: 231 PCAICAAANIASIGIGRSFHACAVKFFGKLDVFVSNSLISFYAKCGSMEDSLLVFNKLLD 290

Query: 396 -RDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWE 454
            R++VSWN+++ GF+ +G   E +  ++ M+ +G  PN+VTFL +L AC+HAGLV  G+ 
Sbjct: 291 ERNVVSWNAVLSGFAQNGRGKEAIDFYQRMILAGCKPNAVTFLSLLWACNHAGLVDEGYS 350

Query: 455 LFN-AMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGF 513
            FN A  D   +    EHY  M++LL R+G+ K AEEF+  LPF+P    W ALLG C  
Sbjct: 351 YFNQARLDNPNLLKA-EHYACMVDLLSRSGQFKRAEEFIHDLPFDPGIGFWKALLGGCQI 409

Query: 514 CEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGC 573
              N E+ E AA+R+L LDP +  ++V++ N ++A+G+      LR +M  KG++++PGC
Sbjct: 410 -HSNVELGELAAQRILALDPGDVSSYVMMSNAHSAAGKWHSVSILRREMKEKGLKRIPGC 468

Query: 574 SWLMRNGGIQMFLSGDKIPAQVAEI 598
           SW+     + +F++GDK   Q  EI
Sbjct: 469 SWIEIRSKVHVFVTGDKNHHQKDEI 493



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 78/273 (28%), Positives = 141/273 (51%), Gaps = 24/273 (8%)

Query: 21  YSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMI 80
           Y K G I+EA+  F+ +   NVVSY +++SG+L+  R+ +A R+F+EMPERNVVSW +MI
Sbjct: 140 YVKVGVIEEAQRAFEDIKMPNVVSYTSLISGYLKIERIRDALRVFDEMPERNVVSWNSMI 199

Query: 81  CGLADAGRVCEARKLFEEMPERNVVSWNSMV------------VGLIRNGELNEARKVFN 128
            G +  G   +A  LF +M    ++   S              +G+ R+     A K F 
Sbjct: 200 GGFSQKGHNEDAVHLFIDMLREGILPTQSTFPCAICAAANIASIGIGRSFHAC-AVKFFG 258

Query: 129 SMPIKNVISWNAMIAGYVECCMMGEAIVLFEE-MEERNVVTWTSMISGYCRAGEVEEGYC 187
            +   +V   N++I+ Y +C  M +++++F + ++ERNVV+W +++SG+ + G  +E   
Sbjct: 259 KL---DVFVSNSLISFYAKCGSMEDSLLVFNKLLDERNVVSWNAVLSGFAQNGRGKEAID 315

Query: 188 LFRRMP----RKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMIN 243
            ++RM     + N V++ +++      G   E    F + +   DN N    +    M++
Sbjct: 316 FYQRMILAGCKPNAVTFLSLLWACNHAGLVDEGYSYFNQAR--LDNPNLLKAEHYACMVD 373

Query: 244 GYIRFGRLEEAQNLFDTVPVRDEIS-WTSMIDG 275
              R G+ + A+     +P    I  W +++ G
Sbjct: 374 LLSRSGQFKRAEEFIHDLPFDPGIGFWKALLGG 406



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 98/355 (27%), Positives = 169/355 (47%), Gaps = 31/355 (8%)

Query: 60  EARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNV----VSWNSMVVGLI 115
           +AR+L+++MP  NVVS T  I   A   +  EA  LF  M   N+     ++ +++    
Sbjct: 47  DARQLYDKMPHLNVVSATTAIGRCARQHQHEEALSLFSAMLVLNLRPNEFTFGTVIQSPK 106

Query: 116 RNGELNEARKVFNSMPIK-----NVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWT 170
             G+++  +++ +   IK     NV   +A++  YV+  ++ EA   FE+++  NVV++T
Sbjct: 107 ALGDIHIGKQL-HVCAIKTGLHSNVFVGSALLDLYVKVGVIEEAQRAFEDIKMPNVVSYT 165

Query: 171 SMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEM--KGICD 228
           S+ISGY +   + +   +F  MP +NVVSW +MIGGF+  G +++++ LFI+M  +GI  
Sbjct: 166 SLISGYLKIERIRDALRVFDEMPERNVVSWNSMIGGFSQKGHNEDAVHLFIDMLREGILP 225

Query: 229 NGNNCNVQSCNSMINGYIRFGRLEE--AQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAY 286
             +      C +     I  GR     A   F  +   D     S+I  Y   G + ++ 
Sbjct: 226 TQSTFPCAICAAANIASIGIGRSFHACAVKFFGKL---DVFVSNSLISFYAKCGSMEDSL 282

Query: 287 YLFHNMPD-RDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGAT 345
            +F+ + D R+ V+W A++SG  QN    EA   +  M   G  P   TF  L  A    
Sbjct: 283 LVFNKLLDERNVVSWNAVLSGFAQNGRGKEAIDFYQRMILAGCKPNAVTFLSLLWACNHA 342

Query: 346 ANIDLG-------RQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNM 393
             +D G       R  +  L+K E  +      C++ + ++ G    A     ++
Sbjct: 343 GLVDEGYSYFNQARLDNPNLLKAEHYA------CMVDLLSRSGQFKRAEEFIHDL 391



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 82/284 (28%), Positives = 138/284 (48%), Gaps = 24/284 (8%)

Query: 41  NVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMP 100
           NV   +A+L  +++ G + EA+R FE++   NVVS+T++I G     R+ +A ++F+EMP
Sbjct: 129 NVFVGSALLDLYVKVGVIEEAQRAFEDIKMPNVVSYTSLISGYLKIERIRDALRVFDEMP 188

Query: 101 ERNVVSWNSMVVGLIRNGELNEARKVFNSM------PIKNVISWNAMIAGYVECCMMGE- 153
           ERNVVSWNSM+ G  + G   +A  +F  M      P ++        A  +    +G  
Sbjct: 189 ERNVVSWNSMIGGFSQKGHNEDAVHLFIDMLREGILPTQSTFPCAICAAANIASIGIGRS 248

Query: 154 ----AIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRR-MPRKNVVSWTAMIGGFA 208
               A+  F +++   V    S+IS Y + G +E+   +F + +  +NVVSW A++ GFA
Sbjct: 249 FHACAVKFFGKLD---VFVSNSLISFYAKCGSMEDSLLVFNKLLDERNVVSWNAVLSGFA 305

Query: 209 WNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLF-----DTVPV 263
            NG  KE++  +  M      G   N  +  S++      G ++E  + F     D   +
Sbjct: 306 QNGRGKEAIDFYQRM---ILAGCKPNAVTFLSLLWACNHAGLVDEGYSYFNQARLDNPNL 362

Query: 264 RDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVA-WTAMISG 306
                +  M+D     GQ   A    H++P    +  W A++ G
Sbjct: 363 LKAEHYACMVDLLSRSGQFKRAEEFIHDLPFDPGIGFWKALLGG 406



 Score = 82.4 bits (202), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 61/198 (30%), Positives = 100/198 (50%), Gaps = 21/198 (10%)

Query: 11  VVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPE 70
           VV  TS I+ Y K   I +A  +F  MP+RNVVS+N+M+ GF Q G   +A  LF +M  
Sbjct: 161 VVSYTSLISGYLKIERIRDALRVFDEMPERNVVSWNSMIGGFSQKGHNEDAVHLFIDMLR 220

Query: 71  RNVVSWTAMI------------CGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNG 118
             ++   +               G+  +   C A K F ++   +V   NS++    + G
Sbjct: 221 EGILPTQSTFPCAICAAANIASIGIGRSFHAC-AVKFFGKL---DVFVSNSLISFYAKCG 276

Query: 119 ELNEARKVFNS-MPIKNVISWNAMIAGYVECCMMGEAIVLFEEME----ERNVVTWTSMI 173
            + ++  VFN  +  +NV+SWNA+++G+ +     EAI  ++ M     + N VT+ S++
Sbjct: 277 SMEDSLLVFNKLLDERNVVSWNAVLSGFAQNGRGKEAIDFYQRMILAGCKPNAVTFLSLL 336

Query: 174 SGYCRAGEVEEGYCLFRR 191
                AG V+EGY  F +
Sbjct: 337 WACNHAGLVDEGYSYFNQ 354


>gi|357490817|ref|XP_003615696.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355517031|gb|AES98654.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 887

 Score =  280 bits (716), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 203/665 (30%), Positives = 311/665 (46%), Gaps = 98/665 (14%)

Query: 15  TSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEM------ 68
           T  ++ Y+K G +  A+ +F  M  RN+ +++AM+ G  +N    E   LF  M      
Sbjct: 121 TKLVSMYAKCGLLGMARKVFNEMSVRNLFTWSAMIGGCSRNKSWGEVVGLFYAMMRDGVL 180

Query: 69  PERNVVSWTAMICG---------------------------------LADAGRVCEARKL 95
           P+  ++      CG                                  A  G +  A+K+
Sbjct: 181 PDEFLLPKVLQACGKCRDLETGRLIHSMVIRRGMRWSKHLRNSIMAVYAKCGEMDCAKKI 240

Query: 96  FEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNV----ISWNAMIAGYVECCMM 151
           F+ M ER+ V+WN+M+ G  +NGE+ +A+K F++M    V    ++WN +I+ Y +    
Sbjct: 241 FDCMDERDSVAWNAMISGFCQNGEIGQAQKYFDAMQKDGVEPSLVTWNILISCYNQLGHC 300

Query: 152 GEAIVLFEEME----ERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGF 207
             AI L  +ME      +V TWTSMISG+ + G +     L + M    V +    I   
Sbjct: 301 DLAIDLMRKMEWFGIAPDVYTWTSMISGFTQKGRISHALDLLKEMFLAGVEANNITIASA 360

Query: 208 AWNGFHKESLLLFIEMKGICDNGNNC-NVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDE 266
           A      +SL + +E+  I    N   NV   NS+I+ Y + G L+ AQ++FD +  RD 
Sbjct: 361 ASACAALKSLSMGLEIHSIAVKMNLVDNVLVGNSLIDMYCKCGDLKAAQHIFDMMSERDV 420

Query: 267 ISWTSMIDGYLSVGQVSNAYYLFHNMPD-------------------------------- 294
            SW S+I GY   G    A+ LF  M +                                
Sbjct: 421 YSWNSIIGGYFQAGFCGKAHELFMKMQESDSPPNIITWNIMITGYMQSGAEDQALDLFKS 480

Query: 295 --------RDAVAWTAMISGLVQNELFVEATYLFMEMR-AHGVPPLNATFSVLFGAAGAT 345
                   R+A +W ++ISG VQ+    +A  +F  M+  H +P      S+L   A   
Sbjct: 481 IEKDGKTKRNAASWNSLISGFVQSGQKDKALQIFRNMQFCHILPNSVTILSILPVCANLV 540

Query: 346 ANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMV 405
           A+  + ++IHC  ++    S+L + N LI  YAK G +  + NIF+ +  +D VSWNSM+
Sbjct: 541 ASKKV-KEIHCFAVRRILVSELSVSNLLIDSYAKSGNLMYSKNIFNELSWKDAVSWNSML 599

Query: 406 MGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKI 465
             +  HG +   L +F  M + G  PN  TF  IL A  HAG+V  G  +F+ +   Y +
Sbjct: 600 SSYVLHGCSESALDLFYQMRKQGLQPNRGTFASILLAYGHAGMVDEGKSVFSCITKDYLV 659

Query: 466 QPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAA 525
           + G EHY +M+ LLGR+GK+ EA +F+  +P EP+  +WGALL AC     N  +A  A 
Sbjct: 660 RQGMEHYSAMVYLLGRSGKLAEALDFIQSMPIEPNSSVWGALLTACRI-HRNFGVAVLAG 718

Query: 526 KRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMF 585
           KR+LE +P N     +L   Y+  G+   E       G K V K  G SW+ RN  +  F
Sbjct: 719 KRMLEFEPGNNITRHLLSQAYSLCGKFEPE-------GEKAVNKPIGQSWIERNNVVHTF 771

Query: 586 LSGDK 590
           + GD+
Sbjct: 772 VVGDQ 776



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 138/544 (25%), Positives = 241/544 (44%), Gaps = 59/544 (10%)

Query: 46  NAMLSGFLQNGRLSEARRLFEEMPERNV----VSWTAMICGLADAGRVCEARKLFEEM-- 99
           ++ L+    NG LSEA  + + + E+      +++  ++    D   +   ++L   +  
Sbjct: 52  DSQLNQLCINGSLSEAVTILDSLAEQGCRVKPITYMNLLQSCIDKDCIFIGKELHSRIGL 111

Query: 100 -PERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLF 158
               N      +V    + G L  ARKVFN M ++N+ +W+AMI G       GE + LF
Sbjct: 112 VENVNPFVETKLVSMYAKCGLLGMARKVFNEMSVRNLFTWSAMIGGCSRNKSWGEVVGLF 171

Query: 159 EEMEERNVVTWTSMIS------GYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGF 212
             M    V+    ++       G CR  ++E G  +   + R+          G  W+  
Sbjct: 172 YAMMRDGVLPDEFLLPKVLQACGKCR--DLETGRLIHSMVIRR----------GMRWSKH 219

Query: 213 HKESLLLFI----EM---KGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRD 265
            + S++       EM   K I D  +  +  + N+MI+G+ + G + +AQ  FD +  +D
Sbjct: 220 LRNSIMAVYAKCGEMDCAKKIFDCMDERDSVAWNAMISGFCQNGEIGQAQKYFDAMQ-KD 278

Query: 266 E-----ISWTSMIDGYLSVGQVSNAYYLFHNM------PDRDAVAWTAMISGLVQNELFV 314
                 ++W  +I  Y  +G    A  L   M      PD     WT+MISG  Q     
Sbjct: 279 GVEPSLVTWNILISCYNQLGHCDLAIDLMRKMEWFGIAPD--VYTWTSMISGFTQKGRIS 336

Query: 315 EATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLI 374
            A  L  EM   GV   N T +    A  A  ++ +G +IH + +K     ++++ N LI
Sbjct: 337 HALDLLKEMFLAGVEANNITIASAASACAALKSLSMGLEIHSIAVKMNLVDNVLVGNSLI 396

Query: 375 SMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSV 434
            MY KCG +  A +IF  M  RD+ SWNS++ G+   G   +  ++F  M ES + PN +
Sbjct: 397 DMYCKCGDLKAAQHIFDMMSERDVYSWNSIIGGYFQAGFCGKAHELFMKMQESDSPPNII 456

Query: 435 TFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLR 494
           T+  +++    +G   +  +LF ++    K +     + S+I+   ++G+  +A +    
Sbjct: 457 TWNIMITGYMQSGAEDQALDLFKSIEKDGKTKRNAASWNSLISGFVQSGQKDKALQIFRN 516

Query: 495 LPF---EPDHRIWGALLGACGFCEGNAEIAE---HAAKRLL--ELDPLNAPAHVVLCNIY 546
           + F    P+     ++L  C     + ++ E    A +R+L  EL   N     +L + Y
Sbjct: 517 MQFCHILPNSVTILSILPVCANLVASKKVKEIHCFAVRRILVSELSVSN-----LLIDSY 571

Query: 547 AASG 550
           A SG
Sbjct: 572 AKSG 575


>gi|297828249|ref|XP_002882007.1| hypothetical protein ARALYDRAFT_483672 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297327846|gb|EFH58266.1| hypothetical protein ARALYDRAFT_483672 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 606

 Score =  280 bits (716), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 158/454 (34%), Positives = 251/454 (55%), Gaps = 16/454 (3%)

Query: 139 NAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPR--KN 196
           N +I  Y++C  +G A  +F+ M +R+ V++ SMI+GY + G +E    LF  MPR  KN
Sbjct: 153 NCLIGLYLKCGCLGFARQMFDRMPQRDSVSYNSMINGYVKCGLIESARELFDLMPREMKN 212

Query: 197 VVSWTAMIGGFAWN--GFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEA 254
           ++SW +MI G+A    G +  S L F EM          ++ S NSMI+GY++ GR+E+A
Sbjct: 213 LISWNSMISGYAQTSEGVNIASKL-FAEMP-------EKDLISWNSMIDGYVKHGRIEDA 264

Query: 255 QNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFV 314
           + LFD +P RD ++  +MIDGY  +G V  A  LF  MP RD VA+ +M++G VQN+  +
Sbjct: 265 KGLFDVMPRRDVVTCATMIDGYAKLGFVHQAKTLFDQMPLRDVVAYNSMMAGYVQNKCHM 324

Query: 315 EATYLF--MEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENC 372
           EA  +F  ME  +H + P   T  ++  A      +     +H  +++ +      L   
Sbjct: 325 EALEIFNDMEKESH-LSPDETTLVIILSAIAQLGRLSKATDMHLYIVEKQFYLGGKLGVA 383

Query: 373 LISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPN 432
           LI MY+KCG I +A  +F  + ++ +  WN+M+ G + HGL      +   +      P+
Sbjct: 384 LIDMYSKCGSIQHAMLVFEGIENKSIDHWNAMIGGLAVHGLGESAFNMLLQIERLSIIPD 443

Query: 433 SVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFV 492
            +TF+G+L+ACSH+GLV  G   F  M   +KI+P  +HY  M+++L R+G I+ A+  +
Sbjct: 444 DITFVGVLNACSHSGLVKEGLLCFELMRRKHKIEPRLQHYGCMVDILSRSGSIELAKNLI 503

Query: 493 LRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRH 552
             +P EP+  IW   L AC       E  E  AK L+     N  ++V+L N+YA+ G  
Sbjct: 504 EEMPIEPNDVIWRTFLTACSH-HKEFETGELVAKHLILQAGYNPSSYVLLSNMYASFGMW 562

Query: 553 VEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFL 586
            +  ++R  M  + + K+PGCSW+  +G +  F 
Sbjct: 563 KDVRRVRTMMKERKIEKIPGCSWIELDGRVHEFF 596



 Score =  179 bits (455), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 120/410 (29%), Positives = 220/410 (53%), Gaps = 18/410 (4%)

Query: 46  NAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPE--RN 103
           N ++  +L+ G L  AR++F+ MP+R+ VS+ +MI G    G +  AR+LF+ MP   +N
Sbjct: 153 NCLIGLYLKCGCLGFARQMFDRMPQRDSVSYNSMINGYVKCGLIESARELFDLMPREMKN 212

Query: 104 VVSWNSMVVGLIRNGE-LNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEME 162
           ++SWNSM+ G  +  E +N A K+F  MP K++ISWN+MI GYV+   + +A  LF+ M 
Sbjct: 213 LISWNSMISGYAQTSEGVNIASKLFAEMPEKDLISWNSMIDGYVKHGRIEDAKGLFDVMP 272

Query: 163 ERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIE 222
            R+VVT  +MI GY + G V +   LF +MP ++VV++ +M+ G+  N  H E+L +F +
Sbjct: 273 RRDVVTCATMIDGYAKLGFVHQAKTLFDQMPLRDVVAYNSMMAGYVQNKCHMEALEIFND 332

Query: 223 MKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISW-----TSMIDGYL 277
           M+   ++  + +  +   +++   + GRL +A ++   + V  +         ++ID Y 
Sbjct: 333 MEK--ESHLSPDETTLVIILSAIAQLGRLSKATDMHLYI-VEKQFYLGGKLGVALIDMYS 389

Query: 278 SVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSV 337
             G + +A  +F  + ++    W AMI GL  + L   A  + +++    + P + TF  
Sbjct: 390 KCGSIQHAMLVFEGIENKSIDHWNAMIGGLAVHGLGESAFNMLLQIERLSIIPDDITFVG 449

Query: 338 LFGAAGATANIDLGRQIHCV-LMKTESESDLILEN--CLISMYAKCGVIDNAYNIFSNM- 393
           +  A   +  +  G  + C  LM+ + + +  L++  C++ + ++ G I+ A N+   M 
Sbjct: 450 VLNACSHSGLVKEG--LLCFELMRRKHKIEPRLQHYGCMVDILSRSGSIELAKNLIEEMP 507

Query: 394 VSRDLVSWNSMVMGFSHHG-LANETLKVFESMLESGTHPNSVTFLGILSA 442
           +  + V W + +   SHH       L     +L++G +P+S   L  + A
Sbjct: 508 IEPNDVIWRTFLTACSHHKEFETGELVAKHLILQAGYNPSSYVLLSNMYA 557



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 76/292 (26%), Positives = 151/292 (51%), Gaps = 47/292 (16%)

Query: 27  IDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADA 86
           ++ A  LF  MP+++++S+N+M+ G++++GR+ +A+ LF+ MP R+VV+   MI G A  
Sbjct: 230 VNIASKLFAEMPEKDLISWNSMIDGYVKHGRIEDAKGLFDVMPRRDVVTCATMIDGYAKL 289

Query: 87  GRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWN------- 139
           G V +A+ LF++MP R+VV++NSM+ G ++N    EA ++FN M  ++ +S +       
Sbjct: 290 GFVHQAKTLFDQMPLRDVVAYNSMMAGYVQNKCHMEALEIFNDMEKESHLSPDETTLVII 349

Query: 140 ---------------------------------AMIAGYVECCMMGEAIVLFEEMEERNV 166
                                            A+I  Y +C  +  A+++FE +E +++
Sbjct: 350 LSAIAQLGRLSKATDMHLYIVEKQFYLGGKLGVALIDMYSKCGSIQHAMLVFEGIENKSI 409

Query: 167 VTWTSMISGYCRAGEVEEGYCLFRRMPRKNV----VSWTAMIGGFAWNGFHKESLLLFIE 222
             W +MI G    G  E  + +  ++ R ++    +++  ++   + +G  KE LL F  
Sbjct: 410 DHWNAMIGGLAVHGLGESAFNMLLQIERLSIIPDDITFVGVLNACSHSGLVKEGLLCFEL 469

Query: 223 MKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVR-DEISWTSMI 273
           M+    +     +Q    M++   R G +E A+NL + +P+  +++ W + +
Sbjct: 470 MRR--KHKIEPRLQHYGCMVDILSRSGSIELAKNLIEEMPIEPNDVIWRTFL 519



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 46/129 (35%), Positives = 64/129 (49%)

Query: 296 DAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIH 355
           D   W A+I      +   +A  LF  M  +GV     + S++  A      +  G QIH
Sbjct: 78  DPFLWNAVIKSHSHGKDPRQALLLFCLMLENGVSVDKFSLSLVLKACSRLGFVKGGMQIH 137

Query: 356 CVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLAN 415
             L KT   SDL L+NCLI +Y KCG +  A  +F  M  RD VS+NSM+ G+   GL  
Sbjct: 138 GFLRKTGLWSDLFLQNCLIGLYLKCGCLGFARQMFDRMPQRDSVSYNSMINGYVKCGLIE 197

Query: 416 ETLKVFESM 424
              ++F+ M
Sbjct: 198 SARELFDLM 206


>gi|225438894|ref|XP_002279137.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Vitis vinifera]
          Length = 628

 Score =  280 bits (715), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 156/461 (33%), Positives = 242/461 (52%), Gaps = 29/461 (6%)

Query: 156 VLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKE 215
           VLF    + + +    +   Y   G ++    LF R    +V  WTA+I G A  G H++
Sbjct: 52  VLFRHGLDHHPILNFKLQRSYASLGRLDYSVALFGRTQNPSVFFWTAIIHGHALRGLHEQ 111

Query: 216 SLLLFIEM--KGICDN--------------------------GNNCNVQSCNSMINGYIR 247
           +L  + +M  +G+  N                          G + ++     +++ Y R
Sbjct: 112 ALNFYAQMLTQGVEPNAFTFSSILKLCPIEPGKALHSQAVKLGFDSDLYVRTGLLDVYAR 171

Query: 248 FGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGL 307
            G +  AQ LFDT+P +  +S T+M+  Y   G++  A  LF  M +RD V W  MI G 
Sbjct: 172 GGDVVSAQQLFDTMPEKSLVSLTAMLTCYAKHGELDAARVLFDGMEERDGVCWNVMIDGY 231

Query: 308 VQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDL 367
            QN +  EA  LF  M      P   T   +  A G    ++ GR +H  +     + ++
Sbjct: 232 TQNGMPNEALVLFRRMLKAKAKPNEVTVLSVLSACGQLGALESGRWVHSYIENNGIQFNV 291

Query: 368 ILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLES 427
            +   L+ MY+KCG +++A  +F  +  +D+V+WNSM++G++ HG + E L++F+SM   
Sbjct: 292 HVGTALVDMYSKCGSLEDARLVFDKIDDKDVVAWNSMIVGYAMHGFSQEALQLFKSMCRM 351

Query: 428 GTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKE 487
           G HP ++TF+GILSAC H+G V+ GW++FN M D Y I+P  EHY  M+NLLGRAG +++
Sbjct: 352 GLHPTNITFIGILSACGHSGWVTEGWDIFNKMKDEYGIEPKIEHYGCMVNLLGRAGHVEQ 411

Query: 488 AEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYA 547
           A E V  +  EPD  +WG LLGAC    G   + E   + L++ +  N+  +++L NIYA
Sbjct: 412 AYELVKNMNIEPDPVLWGTLLGACRL-HGKIALGEKIVELLVDQNLANSGTYILLSNIYA 470

Query: 548 ASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSG 588
           A G      +LR  M   GV+K PGCS +  N  +  FL+G
Sbjct: 471 AVGNWDGVARLRTMMKDSGVKKEPGCSSIEVNNKVHEFLAG 511



 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 119/466 (25%), Positives = 204/466 (43%), Gaps = 92/466 (19%)

Query: 26  FIDEAKALFQLMPQ-----RNVVSYNAMLSGFLQN-----GRLSEARRLFEEMPERNVVS 75
            ID++K +  L+       R+ + ++ +L+  LQ      GRL  +  LF      +V  
Sbjct: 36  LIDKSKTISHLLQIHAVLFRHGLDHHPILNFKLQRSYASLGRLDYSVALFGRTQNPSVFF 95

Query: 76  WTAMICGLADAGRVCEARKLFEEM----PERNVVSWNSMV-------------------- 111
           WTA+I G A  G   +A   + +M     E N  +++S++                    
Sbjct: 96  WTAIIHGHALRGLHEQALNFYAQMLTQGVEPNAFTFSSILKLCPIEPGKALHSQAVKLGF 155

Query: 112 -------VGLI----RNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEE 160
                   GL+    R G++  A+++F++MP K+++S  AM+  Y +   +  A VLF+ 
Sbjct: 156 DSDLYVRTGLLDVYARGGDVVSAQQLFDTMPEKSLVSLTAMLTCYAKHGELDAARVLFDG 215

Query: 161 MEERNVVTWTSMISGYCRAGEVEEGYCLFRRM----PRKNVVSWTAMIGGFAWNGFHKES 216
           MEER+ V W  MI GY + G   E   LFRRM     + N V+  +++      G  +  
Sbjct: 216 MEERDGVCWNVMIDGYTQNGMPNEALVLFRRMLKAKAKPNEVTVLSVLSACGQLGALESG 275

Query: 217 LLL--FIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMID 274
             +  +IE     +NG   NV    ++++ Y + G LE+A+ +FD +  +D ++W SMI 
Sbjct: 276 RWVHSYIE-----NNGIQFNVHVGTALVDMYSKCGSLEDARLVFDKIDDKDVVAWNSMIV 330

Query: 275 GYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNAT 334
           GY                           + G  Q     EA  LF  M   G+ P N T
Sbjct: 331 GY--------------------------AMHGFSQ-----EALQLFKSMCRMGLHPTNIT 359

Query: 335 FSVLFGAAGATANIDLGRQIHCVLMKTESESDLILEN--CLISMYAKCGVIDNAYNIFSN 392
           F  +  A G +  +  G  I    MK E   +  +E+  C++++  + G ++ AY +  N
Sbjct: 360 FIGILSACGHSGWVTEGWDIFNK-MKDEYGIEPKIEHYGCMVNLLGRAGHVEQAYELVKN 418

Query: 393 M-VSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFL 437
           M +  D V W +++     HG      K+ E +++     NS T++
Sbjct: 419 MNIEPDPVLWGTLLGACRLHGKIALGEKIVELLVDQNL-ANSGTYI 463



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 86/341 (25%), Positives = 151/341 (44%), Gaps = 56/341 (16%)

Query: 15  TSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVV 74
           T+ I  ++ RG  ++A   +  M  + V       S  L+   +   + L  +  +    
Sbjct: 97  TAIIHGHALRGLHEQALNFYAQMLTQGVEPNAFTFSSILKLCPIEPGKALHSQAVKLGFD 156

Query: 75  SWTAMICGLAD----AGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSM 130
           S   +  GL D     G V  A++LF+ MPE+++VS  +M+    ++GEL+ AR +F+ M
Sbjct: 157 SDLYVRTGLLDVYARGGDVVSAQQLFDTMPEKSLVSLTAMLTCYAKHGELDAARVLFDGM 216

Query: 131 PIKNVISWNAMIAGYVECCMMGEAIVLFEEMEER-------------------------- 164
             ++ + WN MI GY +  M  EA+VLF  M +                           
Sbjct: 217 EERDGVCWNVMIDGYTQNGMPNEALVLFRRMLKAKAKPNEVTVLSVLSACGQLGALESGR 276

Query: 165 -------------NVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNG 211
                        NV   T+++  Y + G +E+   +F ++  K+VV+W +MI G+A +G
Sbjct: 277 WVHSYIENNGIQFNVHVGTALVDMYSKCGSLEDARLVFDKIDDKDVVAWNSMIVGYAMHG 336

Query: 212 FHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTS 271
           F +E+L LF   K +C  G +    +   +++     G + E  ++F+   ++DE     
Sbjct: 337 FSQEALQLF---KSMCRMGLHPTNITFIGILSACGHSGWVTEGWDIFNK--MKDEYGIEP 391

Query: 272 MIDGYLSV-------GQVSNAYYLFHNMP-DRDAVAWTAMI 304
            I+ Y  +       G V  AY L  NM  + D V W  ++
Sbjct: 392 KIEHYGCMVNLLGRAGHVEQAYELVKNMNIEPDPVLWGTLL 432



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 60/199 (30%), Positives = 106/199 (53%), Gaps = 14/199 (7%)

Query: 7   PKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEA----R 62
           P+  +V LT+ +T Y+K G +D A+ LF  M +R+ V +N M+ G+ QNG  +EA    R
Sbjct: 186 PEKSLVSLTAMLTCYAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALVLFR 245

Query: 63  RLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWN-----SMVVGLIRN 117
           R+ +   + N V+  +++      G + E+ +      E N + +N     ++V    + 
Sbjct: 246 RMLKAKAKPNEVTVLSVLSACGQLGAL-ESGRWVHSYIENNGIQFNVHVGTALVDMYSKC 304

Query: 118 GELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNV----VTWTSMI 173
           G L +AR VF+ +  K+V++WN+MI GY       EA+ LF+ M    +    +T+  ++
Sbjct: 305 GSLEDARLVFDKIDDKDVVAWNSMIVGYAMHGFSQEALQLFKSMCRMGLHPTNITFIGIL 364

Query: 174 SGYCRAGEVEEGYCLFRRM 192
           S    +G V EG+ +F +M
Sbjct: 365 SACGHSGWVTEGWDIFNKM 383



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 38/151 (25%), Positives = 66/151 (43%), Gaps = 19/151 (12%)

Query: 353 QIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHG 412
           QIH VL +   +   IL   L   YA  G +D +  +F    +  +  W +++ G +  G
Sbjct: 48  QIHAVLFRHGLDHHPILNFKLQRSYASLGRLDYSVALFGRTQNPSVFFWTAIIHGHALRG 107

Query: 413 LANETLKVFESMLESGTHPNSVTFLGILSACS-------HAGLVSRGWELFNAMFDVYKI 465
           L  + L  +  ML  G  PN+ TF  IL  C        H+  V  G++      D+Y +
Sbjct: 108 LHEQALNFYAQMLTQGVEPNAFTFSSILKLCPIEPGKALHSQAVKLGFD-----SDLY-V 161

Query: 466 QPGPEHYVSMINLLGRAGKIKEAEEFVLRLP 496
           + G      ++++  R G +  A++    +P
Sbjct: 162 RTG------LLDVYARGGDVVSAQQLFDTMP 186


>gi|108864632|gb|ABG22571.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 692

 Score =  280 bits (715), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 161/469 (34%), Positives = 267/469 (56%), Gaps = 15/469 (3%)

Query: 140 AMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRM------- 192
           A+++ Y +  ++ +A+ LF+E   R++  ++S+++    +   E    + R M       
Sbjct: 125 ALVSAYAKSRLLPDALHLFDETPRRDIYIYSSLLTAVSHSASPELALPILRCMLSADALH 184

Query: 193 PRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLE 252
           P   V+S  A +  FA     +    L         NG++  V+S  S+++ Y + G  +
Sbjct: 185 PDHFVISSVASV--FARLRSRRLGRQLHAHFVVSPYNGDDV-VKS--SLVDMYCKCGSPD 239

Query: 253 EAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNEL 312
           + + +FD++  ++ + WT+++ GY S G+   A  LF +MP R+  AWTA+ISGLV    
Sbjct: 240 DGRKVFDSMSAKNSVVWTALVSGYASNGRSEEALQLFRSMPGRNLFAWTALISGLVNTGE 299

Query: 313 FVEATYLFMEMRAHGVPPLNA-TFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILEN 371
            V A  LF+EMR  GV   +A   S++ G +   A   LGRQ+H   M+    S++I+ N
Sbjct: 300 SVGAVELFVEMRRDGVRIDDAFVLSIVIGGSADLAAFVLGRQLHGSTMRLGFLSNMIVGN 359

Query: 372 CLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHP 431
            LI MY+KC  I +A  +F  +  RD++SW +MV+G + HG A E L +++ M+ +G  P
Sbjct: 360 ALIDMYSKCSDILSAREVFEGITFRDVISWTTMVVGEAQHGRAEEALALYDRMVLAGAKP 419

Query: 432 NSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEF 491
           N VTF+G++ ACSHAGLV +G +LF +M + Y I P  +HY   ++LL R+G + EAEE 
Sbjct: 420 NEVTFVGLIYACSHAGLVQKGRQLFESMKNEYGITPRLQHYTCYLDLLSRSGHLLEAEEL 479

Query: 492 VLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGR 551
           +  +P+EPD   WGALL AC   + +AE+    + +LLEL P ++  +++L N+YA +G+
Sbjct: 480 MTTMPYEPDEATWGALLSACTKYK-DAEMCIRISDKLLELRPKDSSTYILLSNVYAVNGK 538

Query: 552 HVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEILL 600
                K+R  M    +RK PG SW+      ++F +G+ +P  V E ++
Sbjct: 539 WDSVAKVRKCMIGLEIRKEPGYSWIEAGREFRLFHAGE-VPLDVREEIM 586



 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 84/273 (30%), Positives = 139/273 (50%), Gaps = 16/273 (5%)

Query: 15  TSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVV 74
           +S +  Y K G  D+ + +F  M  +N V + A++SG+  NGR  EA +LF  MP RN+ 
Sbjct: 226 SSLVDMYCKCGSPDDGRKVFDSMSAKNSVVWTALVSGYASNGRSEEALQLFRSMPGRNLF 285

Query: 75  SWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEA-----RKVFNS 129
           +WTA+I GL + G    A +LF EM    V   ++ V+ ++  G  + A     R++  S
Sbjct: 286 AWTALISGLVNTGESVGAVELFVEMRRDGVRIDDAFVLSIVIGGSADLAAFVLGRQLHGS 345

Query: 130 MP----IKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEG 185
                 + N+I  NA+I  Y +C  +  A  +FE +  R+V++WT+M+ G  + G  EE 
Sbjct: 346 TMRLGFLSNMIVGNALIDMYSKCSDILSAREVFEGITFRDVISWTTMVVGEAQHGRAEEA 405

Query: 186 YCLFRRM----PRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSM 241
             L+ RM     + N V++  +I   +  G  ++   LF  MK   + G    +Q     
Sbjct: 406 LALYDRMVLAGAKPNEVTFVGLIYACSHAGLVQKGRQLFESMKN--EYGITPRLQHYTCY 463

Query: 242 INGYIRFGRLEEAQNLFDTVPVR-DEISWTSMI 273
           ++   R G L EA+ L  T+P   DE +W +++
Sbjct: 464 LDLLSRSGHLLEAEELMTTMPYEPDEATWGALL 496



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 94/397 (23%), Positives = 180/397 (45%), Gaps = 21/397 (5%)

Query: 47  AMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEM------- 99
           A++S + ++  L +A  LF+E P R++  +++++  ++ +     A  +   M       
Sbjct: 125 ALVSAYAKSRLLPDALHLFDETPRRDIYIYSSLLTAVSHSASPELALPILRCMLSADALH 184

Query: 100 PERNVVSWNSMVVGLIRNGELNE---ARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIV 156
           P+  V+S  + V   +R+  L     A  V +     +V+  ++++  Y +C    +   
Sbjct: 185 PDHFVISSVASVFARLRSRRLGRQLHAHFVVSPYNGDDVVK-SSLVDMYCKCGSPDDGRK 243

Query: 157 LFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKES 216
           +F+ M  +N V WT+++SGY   G  EE   LFR MP +N+ +WTA+I G    G    +
Sbjct: 244 VFDSMSAKNSVVWTALVSGYASNGRSEEALQLFRSMPGRNLFAWTALISGLVNTGESVGA 303

Query: 217 LLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVP----VRDEISWTSM 272
           + LF+EM+      ++  V S   +I G          + L  +      + + I   ++
Sbjct: 304 VELFVEMRRDGVRIDDAFVLSI--VIGGSADLAAFVLGRQLHGSTMRLGFLSNMIVGNAL 361

Query: 273 IDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLN 332
           ID Y     + +A  +F  +  RD ++WT M+ G  Q+    EA  L+  M   G  P  
Sbjct: 362 IDMYSKCSDILSAREVFEGITFRDVISWTTMVVGEAQHGRAEEALALYDRMVLAGAKPNE 421

Query: 333 ATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILEN--CLISMYAKCGVIDNAYNIF 390
            TF  L  A      +  GRQ+    MK E      L++  C + + ++ G +  A  + 
Sbjct: 422 VTFVGLIYACSHAGLVQKGRQLF-ESMKNEYGITPRLQHYTCYLDLLSRSGHLLEAEELM 480

Query: 391 SNM-VSRDLVSWNSMVMGFSHHGLANETLKVFESMLE 426
           + M    D  +W +++   + +  A   +++ + +LE
Sbjct: 481 TTMPYEPDEATWGALLSACTKYKDAEMCIRISDKLLE 517


>gi|302799473|ref|XP_002981495.1| hypothetical protein SELMODRAFT_114873 [Selaginella moellendorffii]
 gi|300150661|gb|EFJ17310.1| hypothetical protein SELMODRAFT_114873 [Selaginella moellendorffii]
          Length = 605

 Score =  280 bits (715), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 168/557 (30%), Positives = 281/557 (50%), Gaps = 57/557 (10%)

Query: 21  YSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMI 80
           Y K   +D+A+ +F+ +P+ N  S+  ++S F QNG+LS A+  F++ P + +V++  MI
Sbjct: 62  YGKCASLDDARLVFESIPEPNEFSWTIIVSAFAQNGQLSSAKEYFDKAPIKTLVTYNVMI 121

Query: 81  CGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNA 140
            G      V +A+ ++  M   N V+WN M+    +N  L  AR +F+ M +++ ++W  
Sbjct: 122 TGYGHQKNVHQAQDIYGRMSSWNAVTWNVMLQTFAQNRHLRNARNLFDQMRVRDEVAWTT 181

Query: 141 MIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSW 200
           +I  Y+    +  A  + E+M   +VV  T+M+S   +AG+++E   LF +MP  +  SW
Sbjct: 182 LICAYLVNGNLEWASSMLEKMPAHDVVVSTAMVSANAQAGQIDEAKYLFDQMPIHSTESW 241

Query: 201 TAMIGG--------------------FAWN---------GFHKESLLLFIEMKGICDNGN 231
            A++                      F+WN         G ++E++ +F  M        
Sbjct: 242 NALMNTGLSSAELCKSLFDENPARDVFSWNTLISVHAQTGDYQEAVQIFNRMPVR----- 296

Query: 232 NCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHN 291
             N  S N +I      G L +A  +FD +P +D +SW S+I GY  +G V +A  +F  
Sbjct: 297 --NTVSYNLVIAANAEAGNLWQAWRIFDEMPCKDSVSWNSLIQGYAQLGYVDDARVMFDT 354

Query: 292 -MPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDL 350
            MP +D V+W+ +I+   Q+    EA  LF  M    V P          A     ++ L
Sbjct: 355 MMPKKDVVSWSCIIAAYAQSGHCREAINLFQRM---DVEPNEMVIVSTLAACSGAKDLAL 411

Query: 351 GRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNM-----VSRDLVSWNSMV 405
           G+ IH  ++  +    + +   L++MYAKCG I  A  +F  M     V+RD V+W+S+V
Sbjct: 412 GKAIHARILSPDLRKSVFVGTALLNMYAKCGAIKQARAVFDRMPHKDVVARDTVTWSSLV 471

Query: 406 MGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKI 465
            G++HH  A+  L ++  M   G  P+SVT++ IL++CSHA L+++    F +M + +  
Sbjct: 472 AGYAHHSHADAIL-LYRDMHLEGIQPDSVTYVSILNSCSHASLLAQARHFFVSMVEDH-- 528

Query: 466 QPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAA 525
                    M+++LGRAG +  AE+ V  +PF+PD   W  LLG C    G+A     AA
Sbjct: 529 --------CMVDVLGRAGFVGRAEDVVRNMPFQPDVVAWNTLLGCCKV-HGDAWRGAVAA 579

Query: 526 KRLLELDPLNAPAHVVL 542
              + + P  A + V+L
Sbjct: 580 WNAVGISPGFAGSTVLL 596



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 90/312 (28%), Positives = 167/312 (53%), Gaps = 25/312 (8%)

Query: 7   PKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFE 66
           P   V    + I+ +++ G   EA  +F  MP RN VSYN +++   + G L +A R+F+
Sbjct: 263 PARDVFSWNTLISVHAQTGDYQEAVQIFNRMPVRNTVSYNLVIAANAEAGNLWQAWRIFD 322

Query: 67  EMPERNVVSWTAMICGLADAGRVCEARKLFEE-MPERNVVSWNSMVVGLIRNGELNEARK 125
           EMP ++ VSW ++I G A  G V +AR +F+  MP+++VVSW+ ++    ++G   EA  
Sbjct: 323 EMPCKDSVSWNSLIQGYAQLGYVDDARVMFDTMMPKKDVVSWSCIIAAYAQSGHCREAIN 382

Query: 126 VFNSMPIKN----VISWNAMIAGYVECCMMGEAI---VLFEEMEERNVVTWTSMISGYCR 178
           +F  M ++     ++S  A  +G  +   +G+AI   +L  ++  ++V   T++++ Y +
Sbjct: 383 LFQRMDVEPNEMVIVSTLAACSGAKDLA-LGKAIHARILSPDL-RKSVFVGTALLNMYAK 440

Query: 179 AGEVEEGYCLFRRMPRKNV-----VSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNC 233
            G +++   +F RMP K+V     V+W++++ G+A +  H +++LL+ +M      G   
Sbjct: 441 CGAIKQARAVFDRMPHKDVVARDTVTWSSLVAGYAHHS-HADAILLYRDMHL---EGIQP 496

Query: 234 NVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMP 293
           +  +  S++N       L +A++ F ++ V D      M+D     G V  A  +  NMP
Sbjct: 497 DSVTYVSILNSCSHASLLAQARHFFVSM-VEDHC----MVDVLGRAGFVGRAEDVVRNMP 551

Query: 294 -DRDAVAWTAMI 304
              D VAW  ++
Sbjct: 552 FQPDVVAWNTLL 563


>gi|326515658|dbj|BAK07075.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 796

 Score =  280 bits (715), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 193/664 (29%), Positives = 317/664 (47%), Gaps = 75/664 (11%)

Query: 4   RNHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGR------ 57
           R HP   +    + +  Y + G    A+ L   MP+ N VS+N ++  + + G+      
Sbjct: 42  RAHPSPSLFLRNTLLAAYCRLG--GHARRLLDEMPRTNAVSFNLLIDAYSRAGQPEASLE 99

Query: 58  -LSEARRLFEEMPERNVVSWTAMIC---GLADAGRVCEARKLFEEMPERNVVSWNSMVVG 113
             + ARR      +R   +     C   G    G+   A  + E +     VS NS+V  
Sbjct: 100 TFARARRSAGVRADRFTYAAALAACSRAGRLREGKAVHALSVLEGIAGGVFVS-NSLVSM 158

Query: 114 LIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEME----------- 162
             R G++ +AR+VF++   ++ +SWNA+++GYV      + + +F  M            
Sbjct: 159 YARCGDMGQARQVFDAADERDDVSWNALVSGYVRAGAQDDMLRVFAMMRRSGIGLNSFAL 218

Query: 163 ------------------------------ERNVVTWTSMISGYCRAGEVEEGYCLFRRM 192
                                         + +V   ++M+  Y + G + E   LF+ +
Sbjct: 219 GSVIKCCAGSDDPVMDIAAAVHGCVVKAGFDSDVFLASAMVGMYAKKGALSEAVALFKSV 278

Query: 193 PRKNVVSWTAMIGGFAWN------GFHKESLLLFIEMKG----ICDNGNNCNVQSCNSMI 242
              NVV + AMI G   +         +E+L L+ E++       +   +  +++CN  +
Sbjct: 279 LDPNVVVFNAMIAGLCRDEAAVGTDVLREALSLYSEVQSRGMEPTEFTFSSVIRACN--L 336

Query: 243 NGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTA 302
            G I FG+    Q L       D I  +++ID YL+ G + + +  F ++P +D V WTA
Sbjct: 337 AGDIEFGKQIHGQVLKHCFQGDDFIG-SALIDLYLNSGCMEDGFRCFTSVPKQDVVTWTA 395

Query: 303 MISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTE 362
           MISG VQNELF  A  LF E+   G+ P   T S +  A  + A    G QI C   K+ 
Sbjct: 396 MISGCVQNELFERALTLFHELLGAGLKPDPFTISSVMNACASLAVARTGEQIQCFATKSG 455

Query: 363 SESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFE 422
                 + N  I MYA+ G +  A   F  M S D+VSW++++   + HG A + L+ F 
Sbjct: 456 FGRFTAMGNSCIHMYARSGDVHAAVRRFQEMESHDIVSWSAVISSHAQHGCARDALRFFN 515

Query: 423 SMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRA 482
            M+++   PN +TFLG+L+ACSH GLV  G + +  M + Y + P  +H   +++LLGRA
Sbjct: 516 EMVDAKVVPNEITFLGVLTACSHGGLVDEGLKYYETMKEEYALSPTIKHCTCVVDLLGRA 575

Query: 483 GKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVL 542
           G++ +AE F+    F  +  IW +LL +C     + E  +  A R++EL P ++ ++V L
Sbjct: 576 GRLADAEAFIRDSIFHDEPVIWRSLLASCRI-HRDMERGQLVADRIMELQPSSSASYVNL 634

Query: 543 CNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDK-------IPAQV 595
            NIY  +G      K+R  M  +GV+K PG SW+    G+  F++GDK       I +++
Sbjct: 635 YNIYLDAGELSLASKIRDVMKERGVKKEPGLSWIELRSGVHSFVAGDKSHPESNAIYSKL 694

Query: 596 AEIL 599
           AE+L
Sbjct: 695 AEML 698



 Score = 98.6 bits (244), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 92/406 (22%), Positives = 169/406 (41%), Gaps = 65/406 (16%)

Query: 126 VFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEG 185
           +  + P  ++   N ++A Y  C + G A  L +EM   N V++  +I  Y RAG+ E  
Sbjct: 40  IVRAHPSPSLFLRNTLLAAY--CRLGGHARRLLDEMPRTNAVSFNLLIDAYSRAGQPEAS 97

Query: 186 YCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQS-------- 237
              F R  R           G   + F   + L      G    G   +  S        
Sbjct: 98  LETFARARRS---------AGVRADRFTYAAALAACSRAGRLREGKAVHALSVLEGIAGG 148

Query: 238 ---CNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPD 294
               NS+++ Y R G + +A+ +FD    RD++SW +++ GY+  G              
Sbjct: 149 VFVSNSLVSMYARCGDMGQARQVFDAADERDDVSWNALVSGYVRAG-------------- 194

Query: 295 RDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLN--ATFSVLFGAAGATANI-DLG 351
                         Q+++      +F  MR  G+  LN  A  SV+   AG+   + D+ 
Sbjct: 195 -------------AQDDML----RVFAMMRRSGI-GLNSFALGSVIKCCAGSDDPVMDIA 236

Query: 352 RQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHH 411
             +H  ++K   +SD+ L + ++ MYAK G +  A  +F +++  ++V +N+M+ G    
Sbjct: 237 AAVHGCVVKAGFDSDVFLASAMVGMYAKKGALSEAVALFKSVLDPNVVVFNAMIAGLCRD 296

Query: 412 GLA------NETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKI 465
             A       E L ++  +   G  P   TF  ++ AC+ AG +  G ++   +   +  
Sbjct: 297 EAAVGTDVLREALSLYSEVQSRGMEPTEFTFSSVIRACNLAGDIEFGKQIHGQVLK-HCF 355

Query: 466 QPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGAC 511
           Q       ++I+L   +G +++       +P + D   W A++  C
Sbjct: 356 QGDDFIGSALIDLYLNSGCMEDGFRCFTSVP-KQDVVTWTAMISGC 400


>gi|224099171|ref|XP_002311390.1| predicted protein [Populus trichocarpa]
 gi|222851210|gb|EEE88757.1| predicted protein [Populus trichocarpa]
          Length = 594

 Score =  280 bits (715), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 162/482 (33%), Positives = 258/482 (53%), Gaps = 16/482 (3%)

Query: 118 GELNEARKVFNSMPI-KNVISWNAMIAGYVECCMMGEAIVLFEEM--EER----NVVTWT 170
           G LN A+K+F+++ I +N   +  MI  Y       EA   +  M  ++R    N  T+T
Sbjct: 80  GSLNYAQKLFDTVDIPRNSFMYTTMIKAYANFGNPREAFAFYSRMLCDQRYVYPNDFTFT 139

Query: 171 SMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNG---FHKESLLLFIEMKGIC 227
            + S   +   V EG     +     ++ +    G  +WN    F+ +   + I ++ + 
Sbjct: 140 YVFSACSKFNGVFEG-----KQAHAQMIKFPFEFGVHSWNSLLDFYGKVGEVGIVVRRVF 194

Query: 228 DNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYY 287
           D     +V S N +INGY++ G L+EA+ LFD +P RD +SWT M+ GY   G +S A  
Sbjct: 195 DKIEGPDVVSWNCLINGYVKSGDLDEARRLFDEMPERDVVSWTIMLVGYADAGFLSEASC 254

Query: 288 LFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATAN 347
           LF  MP R+ V+W+A+I G +Q   + +A  LF EM+   V       + L  A      
Sbjct: 255 LFDEMPKRNLVSWSALIKGYIQIGCYSKALELFKEMQVAKVKMDEVIVTTLLSACARLGA 314

Query: 348 IDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMG 407
           +D GR +H  + K   + D  L   LI MY+KCG ID A+ +F     + +  W+SM+ G
Sbjct: 315 LDQGRWLHMYIDKHGIKVDAHLSTALIDMYSKCGRIDMAWKVFQETGDKKVFVWSSMIGG 374

Query: 408 FSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQP 467
            + H    + +++F  M+E G  P+ +T++ IL+AC+H+GLV  G ++FN M +  K +P
Sbjct: 375 LAMHSFGEKAIELFAKMIECGIEPSEITYINILAACTHSGLVDVGLQIFNRMVENQKPKP 434

Query: 468 GPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKR 527
             +HY  +++LLGRAG + +A   V  +P + D  IW ALL AC     N E+ E   + 
Sbjct: 435 RMQHYGCIVDLLGRAGLLHDAFRVVETMPVKADPAIWRALLSACKL-HRNVELGEQVGRI 493

Query: 528 LLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLS 587
           L++++P N   +V+  N+YAA  R     KLR +M ++G++K PGCS +  NG +  F+S
Sbjct: 494 LIKMEPQNDMNYVLFSNVYAAVNRWDISGKLRREMKVRGMQKNPGCSSIELNGAVHEFVS 553

Query: 588 GD 589
            D
Sbjct: 554 RD 555



 Score =  135 bits (340), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 93/350 (26%), Positives = 169/350 (48%), Gaps = 50/350 (14%)

Query: 31  KALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVC 90
           + +F  +   +VVS+N +++G++++G L EARRLF+EMPER+VVSWT M+ G ADAG + 
Sbjct: 191 RRVFDKIEGPDVVSWNCLINGYVKSGDLDEARRLFDEMPERDVVSWTIMLVGYADAGFLS 250

Query: 91  EARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCM 150
           EA  LF+EMP+RN+VSW++++ G I+ G  ++A ++F  M +  V     ++   +  C 
Sbjct: 251 EASCLFDEMPKRNLVSWSALIKGYIQIGCYSKALELFKEMQVAKVKMDEVIVTTLLSACA 310

Query: 151 ------MGEAIVLFEEMEERNVVTW--TSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTA 202
                  G  + ++ +     V     T++I  Y + G ++  + +F+    K V  W++
Sbjct: 311 RLGALDQGRWLHMYIDKHGIKVDAHLSTALIDMYSKCGRIDMAWKVFQETGDKKVFVWSS 370

Query: 203 MIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVP 262
           MIGG A + F ++++ LF +M         C ++                          
Sbjct: 371 MIGGLAMHSFGEKAIELFAKMI-------ECGIEP------------------------- 398

Query: 263 VRDEISWTSMIDGYLSVGQVSNAYYLFHNM-----PDRDAVAWTAMISGLVQNELFVEAT 317
              EI++ +++      G V     +F+ M     P      +  ++  L +  L  +A 
Sbjct: 399 --SEITYINILAACTHSGLVDVGLQIFNRMVENQKPKPRMQHYGCIVDLLGRAGLLHDAF 456

Query: 318 YLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDL 367
            +   M     P   A +  L  A     N++LG Q+  +L+K E ++D+
Sbjct: 457 RVVETMPVKADP---AIWRALLSACKLHRNVELGEQVGRILIKMEPQNDM 503



 Score = 45.4 bits (106), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 39/151 (25%), Positives = 73/151 (48%), Gaps = 11/151 (7%)

Query: 5   NHPKSLVVHLTSS-ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARR 63
            H   +  HL+++ I  YSK G ID A  +FQ    + V  +++M+ G   +    +A  
Sbjct: 327 KHGIKVDAHLSTALIDMYSKCGRIDMAWKVFQETGDKKVFVWSSMIGGLAMHSFGEKAIE 386

Query: 64  LFEEMPERNV----VSWTAMIC-----GLADAGRVCEARKLFEEMPERNVVSWNSMVVGL 114
           LF +M E  +    +++  ++      GL D G     R +  + P+  +  +  +V  L
Sbjct: 387 LFAKMIECGIEPSEITYINILAACTHSGLVDVGLQIFNRMVENQKPKPRMQHYGCIVDLL 446

Query: 115 IRNGELNEARKVFNSMPIK-NVISWNAMIAG 144
            R G L++A +V  +MP+K +   W A+++ 
Sbjct: 447 GRAGLLHDAFRVVETMPVKADPAIWRALLSA 477


>gi|357115175|ref|XP_003559367.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21300-like [Brachypodium distachyon]
          Length = 849

 Score =  280 bits (715), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 196/638 (30%), Positives = 317/638 (49%), Gaps = 57/638 (8%)

Query: 15  TSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEM------ 68
           ++ I  Y+  G +D A+ +F  M +R+ V +N M+ G+++ G ++ A  LF  M      
Sbjct: 186 SALIKMYADAGLLDGAREVFDGMDERDCVLWNVMMDGYVKAGDVASAVGLFRVMRASGCD 245

Query: 69  PERNVVSWTAMICGL-ADAGRVCEARKLFEEMP-ERNVVSWNSMVVGLIRNGELNEARKV 126
           P    ++    +C   AD     +   L  +   E  V   N++V    +   L EA ++
Sbjct: 246 PNFATLACFLSVCAAEADLLSGVQLHTLAVKYGLEPEVAVANTLVSMYAKCQCLEEAWRL 305

Query: 127 FNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNV----VTWTSMI------SGY 176
           F  MP  ++++WN MI+G V+  ++ +A+ LF +M++  +    VT  S++      +G+
Sbjct: 306 FGLMPRDDLVTWNGMISGCVQNGLVDDALRLFCDMQKSGLQPDSVTLASLLPALTELNGF 365

Query: 177 CRAGEVEEGY----------------------CLFRRMPRK--------NVVSWTAMIGG 206
            +  E+  GY                      C   RM +         +VV  + MI G
Sbjct: 366 KQGKEIH-GYIVRNCAHVDVFLVSALVDIYFKCRDVRMAQNVFDATKSIDVVIGSTMISG 424

Query: 207 FAWNGFHKESLLLFIEMKGICDNGNNCNVQS----CNSMINGYIRFGRLEEAQNLFDTVP 262
           +  N   + ++ +F  +  +    N   V S    C SM    +R G+      L +   
Sbjct: 425 YVLNRMSEAAVKMFRYLLALGIKPNAVMVASTLPACASM--AAMRIGQELHGYVLKNAYE 482

Query: 263 VRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFME 322
            R  +  ++++D Y   G++  ++Y+F  M  +D V W +MIS   QN    EA  LF +
Sbjct: 483 GRCYVE-SALMDMYSKCGRLDLSHYMFSKMSAKDEVTWNSMISSFAQNGEPEEALDLFRQ 541

Query: 323 MRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGV 382
           M   GV   N T S +  A      I  G++IH +++K    +DL  E+ LI MY KCG 
Sbjct: 542 MIMEGVKYNNVTISSILSACAGLPAIYYGKEIHGIIIKGPIRADLFAESALIDMYGKCGN 601

Query: 383 IDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSA 442
           ++ A  +F +M  ++ VSWNS++  +  HGL  E++ +   M E G   + VTFL ++SA
Sbjct: 602 LELALRVFEHMPEKNEVSWNSIISAYGAHGLVKESVDLLCCMQEEGFKADHVTFLALISA 661

Query: 443 CSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHR 502
           C+HAG V  G  LF  M + Y I+P  EH   M++L  RAGK+ +A +F+  +PF+PD  
Sbjct: 662 CAHAGQVQEGLRLFRCMTEEYHIEPQVEHLSCMVDLYSRAGKLDKAMQFIADMPFKPDAG 721

Query: 503 IWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDM 562
           IWGALL AC     N E+AE A++ L +LDP N   +V++ NI A +GR     K+R  M
Sbjct: 722 IWGALLHACRV-HRNVELAEIASQELFKLDPHNCGYYVLMSNINAVAGRWDGVSKMRRLM 780

Query: 563 GLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEILL 600
             K V+K+PG SW+  N    +F++ DK      EI +
Sbjct: 781 KDKKVQKIPGYSWVDVNNTSHLFVAADKNHPDSEEIYM 818



 Score =  171 bits (433), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 120/456 (26%), Positives = 219/456 (48%), Gaps = 19/456 (4%)

Query: 70  ERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNS 129
           +R++   +A+I   ADAG +  AR++F+ M ER+ V WN M+ G ++ G++  A  +F  
Sbjct: 179 DRDMYVGSALIKMYADAGLLDGAREVFDGMDERDCVLWNVMMDGYVKAGDVASAVGLFRV 238

Query: 130 MPIKNVISWNAMIAGYVECCMMGEAIVLFEEME--------ERNVVTWTSMISGYCRAGE 181
           M         A +A ++  C     ++   ++         E  V    +++S Y +   
Sbjct: 239 MRASGCDPNFATLACFLSVCAAEADLLSGVQLHTLAVKYGLEPEVAVANTLVSMYAKCQC 298

Query: 182 VEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSM 241
           +EE + LF  MPR ++V+W  MI G   NG   ++L LF +M+    +G   +  +  S+
Sbjct: 299 LEEAWRLFGLMPRDDLVTWNGMISGCVQNGLVDDALRLFCDMQ---KSGLQPDSVTLASL 355

Query: 242 INGYIRFGRLEEAQNLFDTVPVR-----DEISWTSMIDGYLSVGQVSNAYYLFHNMPDRD 296
           +         ++ + +   + VR     D    ++++D Y     V  A  +F      D
Sbjct: 356 LPALTELNGFKQGKEIHGYI-VRNCAHVDVFLVSALVDIYFKCRDVRMAQNVFDATKSID 414

Query: 297 AVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHC 356
            V  + MISG V N +   A  +F  + A G+ P     +    A  + A + +G+++H 
Sbjct: 415 VVIGSTMISGYVLNRMSEAAVKMFRYLLALGIKPNAVMVASTLPACASMAAMRIGQELHG 474

Query: 357 VLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANE 416
            ++K   E    +E+ L+ MY+KCG +D ++ +FS M ++D V+WNSM+  F+ +G   E
Sbjct: 475 YVLKNAYEGRCYVESALMDMYSKCGRLDLSHYMFSKMSAKDEVTWNSMISSFAQNGEPEE 534

Query: 417 TLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMI 476
            L +F  M+  G   N+VT   ILSAC+    +  G E+   +     I+       ++I
Sbjct: 535 ALDLFRQMIMEGVKYNNVTISSILSACAGLPAIYYGKEIHGIIIK-GPIRADLFAESALI 593

Query: 477 NLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACG 512
           ++ G+ G ++ A      +P E +   W +++ A G
Sbjct: 594 DMYGKCGNLELALRVFEHMP-EKNEVSWNSIISAYG 628



 Score =  135 bits (339), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 87/295 (29%), Positives = 142/295 (48%), Gaps = 12/295 (4%)

Query: 170 TSMISGYCRAGEVEEGYCLFRRMPRKNV---VSWTAMIGGFAWNGFHKESLLLFIEM--- 223
           T ++  Y  A    +   +F  +PR      + W  +I GF   G H+ ++L +++M   
Sbjct: 80  TRLVGMYVLARRFRDAVAVFSSLPRAAAAAALPWNWLIRGFTMAGHHRLAVLFYVKMWAH 139

Query: 224 -KGICDNGNNCN--VQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVG 280
                 +G+     V+SC ++  G +  GRL         +  RD    +++I  Y   G
Sbjct: 140 PSSPRPDGHTLPYVVKSCAAL--GALHLGRLVHRTTRALGLD-RDMYVGSALIKMYADAG 196

Query: 281 QVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFG 340
            +  A  +F  M +RD V W  M+ G V+      A  LF  MRA G  P  AT +    
Sbjct: 197 LLDGAREVFDGMDERDCVLWNVMMDGYVKAGDVASAVGLFRVMRASGCDPNFATLACFLS 256

Query: 341 AAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVS 400
              A A++  G Q+H + +K   E ++ + N L+SMYAKC  ++ A+ +F  M   DLV+
Sbjct: 257 VCAAEADLLSGVQLHTLAVKYGLEPEVAVANTLVSMYAKCQCLEEAWRLFGLMPRDDLVT 316

Query: 401 WNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWEL 455
           WN M+ G   +GL ++ L++F  M +SG  P+SVT   +L A +      +G E+
Sbjct: 317 WNGMISGCVQNGLVDDALRLFCDMQKSGLQPDSVTLASLLPALTELNGFKQGKEI 371


>gi|116310835|emb|CAH67622.1| OSIGBa0140J09.3 [Oryza sativa Indica Group]
          Length = 1027

 Score =  280 bits (715), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 194/630 (30%), Positives = 307/630 (48%), Gaps = 58/630 (9%)

Query: 15  TSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEM------ 68
           +S I  Y+K G   +AK +F L  ++N+V +NAML+GF+QN    EA R+F+ M      
Sbjct: 364 SSLINLYAKCGCPSDAKNVFDLSCEKNIVMWNAMLTGFVQNELPEEAIRMFQYMMRYTLQ 423

Query: 69  -PERNVVS--------------------------------WTAMICGLADAGRVCEARKL 95
             E   VS                                  A +   +  G + +A+ L
Sbjct: 424 TDEFTFVSILGACTYLSSFYLGKQVHCVTIKNCMDISLFVANATLDMYSKYGAIGDAKAL 483

Query: 96  FEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAI 155
           F  +P ++ +SWN++ VGL +N E  EA  +   M +  +   +   +  +  C    A 
Sbjct: 484 FSLIPYKDSISWNALTVGLAQNLEEEEAVCMLKRMRLHGITPDDVSFSTAINACSNIRAT 543

Query: 156 VLFEEMEE--------RNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGF 207
              +++           N    +S+I  Y + G+VE    +F ++   ++V   A+I GF
Sbjct: 544 ETGKQIHCLAIKYGICSNHAVGSSLIDLYSKHGDVESSRKIFAQVDASSIVPINALIAGF 603

Query: 208 AWNGFHKESLLLFIEMKGICDNGNNCNVQS----CNSMINGYIRFGRLEEAQNLFDTVPV 263
             N    E++ LF ++       ++    S    C+  +N  I  G+      L   V  
Sbjct: 604 VQNNNEDEAIQLFQQVLKDGLKPSSVTFSSILSGCSGSLNSAI--GKQVHCYTLKSGVLY 661

Query: 264 RDEISWTSMIDGYLSVGQVSNAYYLFHNMPD-RDAVAWTAMISGLVQNELFVEATYLFME 322
            D +   S+   YL    + +A  L   MPD ++   WTA+ISG  QN     +   F  
Sbjct: 662 DDTLLGVSLAGIYLKSKMLEDANKLLTEMPDHKNLFEWTAIISGYAQNGYGDHSLVSFWR 721

Query: 323 MRAHGVPPLNATF-SVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCG 381
           MR   V    ATF SVL   +  TA  D G++IH ++ K+   S     + LI MY+KCG
Sbjct: 722 MRHCNVRSDEATFASVLKACSDVTAFAD-GKEIHGLITKSGFGSYETATSALIDMYSKCG 780

Query: 382 VIDNAYNIFSNMVSR-DLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGIL 440
            + +++  F  + ++ D++ WNSM++GF+ +G A+E L +F+ M E    P+ VTFLG+L
Sbjct: 781 DVISSFEAFKELKNKQDIMPWNSMIVGFAKNGYADEALLLFQKMEELQIKPDEVTFLGVL 840

Query: 441 SACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPD 500
            AC+H+GL+S G   F  M  VY + P  +HY   I+LLGR G ++EA+E + +LPF PD
Sbjct: 841 IACTHSGLISEGRHFFGPMRKVYGLTPRLDHYACFIDLLGRGGHLQEAQEAIDQLPFRPD 900

Query: 501 HRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRM 560
             +W   L AC     + E  + AA++L+EL+P  +  +V+L +++AA+G   E    R 
Sbjct: 901 GVVWATYLAACRM-HKDEERGKIAARKLVELEPQYSSTYVLLSSLHAATGNWAEAKVTRE 959

Query: 561 DMGLKGVRKVPGCSWLMRNGGIQMFLSGDK 590
            M  KGV K PGCSW+       +FL  DK
Sbjct: 960 SMREKGVAKFPGCSWITVGNKTSLFLVQDK 989



 Score =  166 bits (419), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 119/450 (26%), Positives = 220/450 (48%), Gaps = 33/450 (7%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPER----NV 73
           +  Y+K G +  A+ +F  +   + + +++M++ + + G   EA  LF  M +     + 
Sbjct: 200 VDMYAKCGDVPNARRVFDGIACPDTICWSSMIACYHRVGCYQEALALFSRMDKMGSAPDQ 259

Query: 74  VSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNG-ELN----------- 121
           V+   +I  LA +GR+  A  L ++MP  + V+WN+++ G  ++G E N           
Sbjct: 260 VTLVTIISTLASSGRLDHATALLKKMPTPSTVAWNAVISGHAQSGLEFNVLGLYKDMRSW 319

Query: 122 ---EARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCR 178
                R  F SM     +S  A +  +VE   M  A V+     + NV   +S+I+ Y +
Sbjct: 320 GLWPTRSTFASM-----LSAAANMKAFVEGQQMHAAAVM--HGLDANVFVGSSLINLYAK 372

Query: 179 AGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQS- 237
            G   +   +F     KN+V W AM+ GF  N   +E++ +F  M       +     S 
Sbjct: 373 CGCPSDAKNVFDLSCEKNIVMWNAMLTGFVQNELPEEAIRMFQYMMRYTLQTDEFTFVSI 432

Query: 238 ---CNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPD 294
              C  + + Y+  G+      + + + +   ++  + +D Y   G + +A  LF  +P 
Sbjct: 433 LGACTYLSSFYL--GKQVHCVTIKNCMDISLFVA-NATLDMYSKYGAIGDAKALFSLIPY 489

Query: 295 RDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQI 354
           +D+++W A+  GL QN    EA  +   MR HG+ P + +FS    A       + G+QI
Sbjct: 490 KDSISWNALTVGLAQNLEEEEAVCMLKRMRLHGITPDDVSFSTAINACSNIRATETGKQI 549

Query: 355 HCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLA 414
           HC+ +K    S+  + + LI +Y+K G ++++  IF+ + +  +V  N+++ GF  +   
Sbjct: 550 HCLAIKYGICSNHAVGSSLIDLYSKHGDVESSRKIFAQVDASSIVPINALIAGFVQNNNE 609

Query: 415 NETLKVFESMLESGTHPNSVTFLGILSACS 444
           +E +++F+ +L+ G  P+SVTF  ILS CS
Sbjct: 610 DEAIQLFQQVLKDGLKPSSVTFSSILSGCS 639



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 102/388 (26%), Positives = 189/388 (48%), Gaps = 12/388 (3%)

Query: 116 RNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEER----NVVTWTS 171
           + G++  AR+VF+ +   + I W++MIA Y       EA+ LF  M++     + VT  +
Sbjct: 205 KCGDVPNARRVFDGIACPDTICWSSMIACYHRVGCYQEALALFSRMDKMGSAPDQVTLVT 264

Query: 172 MISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGN 231
           +IS    +G ++    L ++MP  + V+W A+I G A +G     L L+ +M+     G 
Sbjct: 265 IISTLASSGRLDHATALLKKMPTPSTVAWNAVISGHAQSGLEFNVLGLYKDMRSW---GL 321

Query: 232 NCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVR----DEISWTSMIDGYLSVGQVSNAYY 287
                +  SM++         E Q +     +     +    +S+I+ Y   G  S+A  
Sbjct: 322 WPTRSTFASMLSAAANMKAFVEGQQMHAAAVMHGLDANVFVGSSLINLYAKCGCPSDAKN 381

Query: 288 LFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATAN 347
           +F    +++ V W AM++G VQNEL  EA  +F  M  + +     TF  + GA    ++
Sbjct: 382 VFDLSCEKNIVMWNAMLTGFVQNELPEEAIRMFQYMMRYTLQTDEFTFVSILGACTYLSS 441

Query: 348 IDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMG 407
             LG+Q+HCV +K   +  L + N  + MY+K G I +A  +FS +  +D +SWN++ +G
Sbjct: 442 FYLGKQVHCVTIKNCMDISLFVANATLDMYSKYGAIGDAKALFSLIPYKDSISWNALTVG 501

Query: 408 FSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQP 467
            + +    E + + + M   G  P+ V+F   ++ACS+      G ++ + +   Y I  
Sbjct: 502 LAQNLEEEEAVCMLKRMRLHGITPDDVSFSTAINACSNIRATETGKQI-HCLAIKYGICS 560

Query: 468 GPEHYVSMINLLGRAGKIKEAEEFVLRL 495
                 S+I+L  + G ++ + +   ++
Sbjct: 561 NHAVGSSLIDLYSKHGDVESSRKIFAQV 588



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 126/561 (22%), Positives = 246/561 (43%), Gaps = 79/561 (14%)

Query: 12  VHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEM--- 68
           V L + I+  +  G +D A AL + MP  + V++NA++SG  Q+G       L+++M   
Sbjct: 260 VTLVTIISTLASSGRLDHATALLKKMPTPSTVAWNAVISGHAQSGLEFNVLGLYKDMRSW 319

Query: 69  ---PERNVVSWTAMICGLADAGRVCEARKLFEEMP----ERNVVSWNSMVVGLIRNGELN 121
              P R+  ++ +M+   A+     E +++         + NV   +S++    + G  +
Sbjct: 320 GLWPTRS--TFASMLSAAANMKAFVEGQQMHAAAVMHGLDANVFVGSSLINLYAKCGCPS 377

Query: 122 EARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEME----ERNVVTWTSMISG-- 175
           +A+ VF+    KN++ WNAM+ G+V+  +  EAI +F+ M     + +  T+ S++    
Sbjct: 378 DAKNVFDLSCEKNIVMWNAMLTGFVQNELPEEAIRMFQYMMRYTLQTDEFTFVSILGACT 437

Query: 176 ---------------------------------YCRAGEVEEGYCLFRRMPRKNVVSWTA 202
                                            Y + G + +   LF  +P K+ +SW A
Sbjct: 438 YLSSFYLGKQVHCVTIKNCMDISLFVANATLDMYSKYGAIGDAKALFSLIPYKDSISWNA 497

Query: 203 MIGGFAWNGFHKESLLLFIEMK--GIC--DNGNNCNVQSCNSMINGYIRFGRLEEAQNLF 258
           +  G A N   +E++ +   M+  GI   D   +  + +C+++        R  E     
Sbjct: 498 LTVGLAQNLEEEEAVCMLKRMRLHGITPDDVSFSTAINACSNI--------RATETGKQI 549

Query: 259 DTVPVRDEIS-----WTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELF 313
             + ++  I       +S+ID Y   G V ++  +F  +     V   A+I+G VQN   
Sbjct: 550 HCLAIKYGICSNHAVGSSLIDLYSKHGDVESSRKIFAQVDASSIVPINALIAGFVQNNNE 609

Query: 314 VEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTES-ESDLILENC 372
            EA  LF ++   G+ P + TFS +      + N  +G+Q+HC  +K+     D +L   
Sbjct: 610 DEAIQLFQQVLKDGLKPSSVTFSSILSGCSGSLNSAIGKQVHCYTLKSGVLYDDTLLGVS 669

Query: 373 LISMYAKCGVIDNAYNIFSNMVS-RDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHP 431
           L  +Y K  ++++A  + + M   ++L  W +++ G++ +G  + +L  F  M       
Sbjct: 670 LAGIYLKSKMLEDANKLLTEMPDHKNLFEWTAIISGYAQNGYGDHSLVSFWRMRHCNVRS 729

Query: 432 NSVTFLGILSACSHAGLVSRGWELFNAM----FDVYKIQPGPEHYVSMINLLGRAGKIKE 487
           +  TF  +L ACS     + G E+   +    F  Y+         ++I++  + G +  
Sbjct: 730 DEATFASVLKACSDVTAFADGKEIHGLITKSGFGSYETATS-----ALIDMYSKCGDVIS 784

Query: 488 AEEFVLRLPFEPDHRIWGALL 508
           + E    L  + D   W +++
Sbjct: 785 SFEAFKELKNKQDIMPWNSMI 805



 Score =  112 bits (281), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 65/241 (26%), Positives = 115/241 (47%), Gaps = 35/241 (14%)

Query: 240 SMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGY----------------------- 276
           ++++ Y + G +  A+ +FD +   D I W+SMI  Y                       
Sbjct: 198 ALVDMYAKCGDVPNARRVFDGIACPDTICWSSMIACYHRVGCYQEALALFSRMDKMGSAP 257

Query: 277 ------------LSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMR 324
                        S G++ +A  L   MP    VAW A+ISG  Q+ L      L+ +MR
Sbjct: 258 DQVTLVTIISTLASSGRLDHATALLKKMPTPSTVAWNAVISGHAQSGLEFNVLGLYKDMR 317

Query: 325 AHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVID 384
           + G+ P  +TF+ +  AA        G+Q+H   +    ++++ + + LI++YAKCG   
Sbjct: 318 SWGLWPTRSTFASMLSAAANMKAFVEGQQMHAAAVMHGLDANVFVGSSLINLYAKCGCPS 377

Query: 385 NAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACS 444
           +A N+F     +++V WN+M+ GF  + L  E +++F+ M+      +  TF+ IL AC+
Sbjct: 378 DAKNVFDLSCEKNIVMWNAMLTGFVQNELPEEAIRMFQYMMRYTLQTDEFTFVSILGACT 437

Query: 445 H 445
           +
Sbjct: 438 Y 438



 Score = 82.4 bits (202), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 77/294 (26%), Positives = 124/294 (42%), Gaps = 29/294 (9%)

Query: 271 SMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMR-AHGVP 329
           S+++ Y   G+V  A+       +R + A ++++S   ++    +    F  +R   G  
Sbjct: 96  SLVELYCKSGRVGYAWSALGYAGERASGAASSLLSCHARSGSPGDVLGAFRYIRCTAGGR 155

Query: 330 PLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNI 389
           P     +V+  A      +  GRQ+HC ++K+   S +  E  L+ MYAKCG + NA  +
Sbjct: 156 PDQFGLAVVLSACSRVGVLAYGRQVHCDVVKSGFSSSVFCEAALVDMYAKCGDVPNARRV 215

Query: 390 FSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLV 449
           F  +   D + W+SM+  +   G   E L +F  M + G+ P+ VT + I+S  + +G +
Sbjct: 216 FDGIACPDTICWSSMIACYHRVGCYQEALALFSRMDKMGSAPDQVTLVTIISTLASSGRL 275

Query: 450 SRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWG---- 505
                L   M       P P        + G A   +   EF + L    D R WG    
Sbjct: 276 DHATALLKKM-------PTPSTVAWNAVISGHA---QSGLEFNV-LGLYKDMRSWGLWPT 324

Query: 506 -----ALLGAC----GFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASG 550
                ++L A      F EG      HAA  +  LD  N      L N+YA  G
Sbjct: 325 RSTFASMLSAAANMKAFVEGQ---QMHAAAVMHGLDA-NVFVGSSLINLYAKCG 374


>gi|297810061|ref|XP_002872914.1| hypothetical protein ARALYDRAFT_327675 [Arabidopsis lyrata subsp.
            lyrata]
 gi|297318751|gb|EFH49173.1| hypothetical protein ARALYDRAFT_327675 [Arabidopsis lyrata subsp.
            lyrata]
          Length = 1305

 Score =  280 bits (715), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 182/627 (29%), Positives = 317/627 (50%), Gaps = 59/627 (9%)

Query: 27   IDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADA 86
            +D A  +F  MP+R+ +++N ++   LQ+G   +A +LF  M      ++ + +  L   
Sbjct: 576  LDLANKIFDEMPKRDDLAWNEIVMVNLQSGNWEKAVKLFRVMRFSGAKAYDSTMVKLL-- 633

Query: 87   GRVCEARKLFEEMP-----------ERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNV 135
             +VC  ++ F +             E NV   NS++V   RNG+L  +RKVFNSM  +N+
Sbjct: 634  -QVCSNKEGFAQGRQIHGYVLRLGFESNVSMCNSLIVMYSRNGKLESSRKVFNSMVDRNL 692

Query: 136  ISWNAMIAGYVECCMMGEAIVLFEEME----ERNVVTWTSMISGYCRAGEVEEGYCLFRR 191
             SWN++++ Y     + +A+ L +EME    + ++VTW S++SGY       +   + +R
Sbjct: 693  SSWNSIVSSYTRLGYVDDAMGLLDEMETCGLKPDIVTWNSLLSGYASKALSRDAIAVLKR 752

Query: 192  MP----RKNVVSWTAM---------------IGGFA-----WNGFHKESLLLFIEMKG-- 225
            +     + N  S +++               I G+      W   + E+ L+ + +K   
Sbjct: 753  IQIAGLKPNTSSISSLLQAVYEPGLVKLGKAIHGYVIRNQLWYDVYVETTLIDMYIKTGY 812

Query: 226  ------ICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVR----DEISWTSMIDG 275
                  + D  +  N+ + NS+I+G    G L+EA+ L   +       + ++W S++ G
Sbjct: 813  LPYARMVFDMMDEKNIVAWNSLISGLSYTGLLKEAEALISRMEKEGIKSNAVTWNSLVSG 872

Query: 276  YLSVGQVSNAYYLFHNMP----DRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPL 331
            Y + G+   A  +   M     + + V+WTA++SG  +N  F     +F++M+  GV P 
Sbjct: 873  YATWGKTEKALAVVGKMKKNGVEPNVVSWTAILSGCSKNGNFGNGLKIFLKMQEEGVSPN 932

Query: 332  NATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFS 391
            +AT S L    G  + +  G+++H   +K     D  +   L+ MYAK G + +A  IF 
Sbjct: 933  SATISSLLRILGCLSLLYSGKEVHSFCLKNNLTRDAHVATALVDMYAKSGDLQSAAEIFW 992

Query: 392  NMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSR 451
             + ++ L SWN M+MG++      E + VF +MLE+G  P+++TF  +LS C ++GLV  
Sbjct: 993  GIKNKPLASWNCMIMGYAMFRRGEEGIAVFNAMLEAGIEPDAITFTSVLSVCKNSGLVRE 1052

Query: 452  GWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGAC 511
            GW+ F+ M   Y + P  EH   M+ LLGR+G + EA +F+  +P +PD  IWGA L +C
Sbjct: 1053 GWKYFDLMRSHYGVIPTIEHCSCMVELLGRSGYLDEAWDFIRTMPLKPDATIWGAFLSSC 1112

Query: 512  GFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVP 571
                 + E+AE A KRL  L+P N+  ++++ N+Y+   R  +  ++R  M    VR   
Sbjct: 1113 KI-HRDLELAEIAWKRLQVLEPHNSANYMMMINLYSNLNRWGDVERIRNSMSNNRVRVQD 1171

Query: 572  GCSWLMRNGGIQMFLSGDKIPAQVAEI 598
              SW+  +  + +F +  K      EI
Sbjct: 1172 LWSWIQIDQTVHIFYAEGKAHPDEGEI 1198



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 136/579 (23%), Positives = 245/579 (42%), Gaps = 60/579 (10%)

Query: 48   MLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMP--ERNVV 105
            +++ +L+ G    A  +F     RN VSW   +    D G   E  K+ EE    +   V
Sbjct: 463  LITRYLEFGEFGYASAVFFLGFPRNQVSWRDFLEKAEDFG--VEKYKVLEEFVRLQNKGV 520

Query: 106  SWNSMVV---------------------GLIRNGELNEARKVFNSMPIKNVISWNAMIAG 144
            +++ +V+                     GLI+ G  N   +V +           A++  
Sbjct: 521  NFDEVVLAMVFRICAVLMYRFLGFTIHGGLIKRGLDNSDTRVVS-----------ALMGF 569

Query: 145  YVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMI 204
            Y  C  +  A  +F+EM +R+ + W  ++    ++G  E+   LFR M      ++ + +
Sbjct: 570  YGRCVSLDLANKIFDEMPKRDDLAWNEIVMVNLQSGNWEKAVKLFRVMRFSGAKAYDSTM 629

Query: 205  GGFAWNGFHKESLLLFIEMKG-ICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPV 263
                    +KE      ++ G +   G   NV  CNS+I  Y R G+LE ++ +F+++  
Sbjct: 630  VKLLQVCSNKEGFAQGRQIHGYVLRLGFESNVSMCNSLIVMYSRNGKLESSRKVFNSMVD 689

Query: 264  RDEISWTSMIDGYLSVGQVSNAYYLFHNMP----DRDAVAWTAMISGLVQNELFVEATYL 319
            R+  SW S++  Y  +G V +A  L   M       D V W +++SG     L  +A  +
Sbjct: 690  RNLSSWNSIVSSYTRLGYVDDAMGLLDEMETCGLKPDIVTWNSLLSGYASKALSRDAIAV 749

Query: 320  FMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAK 379
               ++  G+ P  ++ S L  A      + LG+ IH  +++ +   D+ +E  LI MY K
Sbjct: 750  LKRIQIAGLKPNTSSISSLLQAVYEPGLVKLGKAIHGYVIRNQLWYDVYVETTLIDMYIK 809

Query: 380  CGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGI 439
             G +  A  +F  M  +++V+WNS++ G S+ GL  E   +   M + G   N+VT+  +
Sbjct: 810  TGYLPYARMVFDMMDEKNIVAWNSLISGLSYTGLLKEAEALISRMEKEGIKSNAVTWNSL 869

Query: 440  LSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFE- 498
            +S  +  G   +   +   M     ++P    + ++++   + G      +  L++  E 
Sbjct: 870  VSGYATWGKTEKALAVVGKM-KKNGVEPNVVSWTAILSGCSKNGNFGNGLKIFLKMQEEG 928

Query: 499  --PDHRIWGAL---LGACGFCEGNAEIAEHAAKRLLELDPLNAPAHV--VLCNIYAASGR 551
              P+     +L   LG         E+     K  L  D     AHV   L ++YA SG 
Sbjct: 929  VSPNSATISSLLRILGCLSLLYSGKEVHSFCLKNNLTRD-----AHVATALVDMYAKSGD 983

Query: 552  HVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDK 590
                 ++       G++  P  SW     G  MF  G++
Sbjct: 984  LQSAAEI-----FWGIKNKPLASWNCMIMGYAMFRRGEE 1017



 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 116/499 (23%), Positives = 213/499 (42%), Gaps = 70/499 (14%)

Query: 16   SSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMP----ER 71
            S I  YS+ G ++ ++ +F  M  RN+ S+N+++S + + G + +A  L +EM     + 
Sbjct: 666  SLIVMYSRNGKLESSRKVFNSMVDRNLSSWNSIVSSYTRLGYVDDAMGLLDEMETCGLKP 725

Query: 72   NVVSWTAMICGLA------DAGRVCEARKLFEEMPERNVVS------------------- 106
            ++V+W +++ G A      DA  V +  ++    P  + +S                   
Sbjct: 726  DIVTWNSLLSGYASKALSRDAIAVLKRIQIAGLKPNTSSISSLLQAVYEPGLVKLGKAIH 785

Query: 107  --------W------NSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMG 152
                    W       +++   I+ G L  AR VF+ M  KN+++WN++I+G     ++ 
Sbjct: 786  GYVIRNQLWYDVYVETTLIDMYIKTGYLPYARMVFDMMDEKNIVAWNSLISGLSYTGLLK 845

Query: 153  EAIVLFEEMEER----NVVTWTSMISGYCRAGEVEEGYCLFRRMPRK----NVVSWTAMI 204
            EA  L   ME+     N VTW S++SGY   G+ E+   +  +M +     NVVSWTA++
Sbjct: 846  EAEALISRMEKEGIKSNAVTWNSLVSGYATWGKTEKALAVVGKMKKNGVEPNVVSWTAIL 905

Query: 205  GGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNL-FDTVPV 263
             G + NG     L +F++M+    + N+  + S   ++         +E  +        
Sbjct: 906  SGCSKNGNFGNGLKIFLKMQEEGVSPNSATISSLLRILGCLSLLYSGKEVHSFCLKNNLT 965

Query: 264  RDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEM 323
            RD    T+++D Y   G + +A  +F  + ++   +W  MI G        E   +F  M
Sbjct: 966  RDAHVATALVDMYAKSGDLQSAAEIFWGIKNKPLASWNCMIMGYAMFRRGEEGIAVFNAM 1025

Query: 324  RAHGVPPLNATFSVLFGAAGATANI-------DLGRQIHCVLMKTESESDLILENCLISM 376
               G+ P   TF+ +      +  +       DL R  + V+   E  S      C++ +
Sbjct: 1026 LEAGIEPDAITFTSVLSVCKNSGLVREGWKYFDLMRSHYGVIPTIEHCS------CMVEL 1079

Query: 377  YAKCGVIDNAYNIFSNM-VSRDLVSWNSMVMGFSHHG---LANETLKVFESMLESGTHPN 432
              + G +D A++    M +  D   W + +     H    LA    K  + +LE     N
Sbjct: 1080 LGRSGYLDEAWDFIRTMPLKPDATIWGAFLSSCKIHRDLELAEIAWKRLQ-VLEPHNSAN 1138

Query: 433  SVTFLGILSACSHAGLVSR 451
             +  + + S  +  G V R
Sbjct: 1139 YMMMINLYSNLNRWGDVER 1157



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 78/315 (24%), Positives = 142/315 (45%), Gaps = 29/315 (9%)

Query: 15   TSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPER--- 71
            T+ I  Y K G++  A+ +F +M ++N+V++N+++SG    G L EA  L   M +    
Sbjct: 801  TTLIDMYIKTGYLPYARMVFDMMDEKNIVAWNSLISGLSYTGLLKEAEALISRMEKEGIK 860

Query: 72   -NVVSWTAMICGLADAGRVCEARKLFEEMP----ERNVVSWNSMVVGLIRNGELNEARKV 126
             N V+W +++ G A  G+  +A  +  +M     E NVVSW +++ G  +NG      K+
Sbjct: 861  SNAVTWNSLVSGYATWGKTEKALAVVGKMKKNGVEPNVVSWTAILSGCSKNGNFGNGLKI 920

Query: 127  FNSM------PIKNVISWNAMIAGYVECCMMGEAIVLF--EEMEERNVVTWTSMISGYCR 178
            F  M      P    IS    I G +     G+ +  F  +    R+    T+++  Y +
Sbjct: 921  FLKMQEEGVSPNSATISSLLRILGCLSLLYSGKEVHSFCLKNNLTRDAHVATALVDMYAK 980

Query: 179  AGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSC 238
            +G+++    +F  +  K + SW  MI G+A     +E + +F     + + G   +  + 
Sbjct: 981  SGDLQSAAEIFWGIKNKPLASWNCMIMGYAMFRRGEEGIAVF---NAMLEAGIEPDAITF 1037

Query: 239  NSMINGYIRFGRLEEAQNLFD-------TVPVRDEISWTSMIDGYLSVGQVSNAYYLFHN 291
             S+++     G + E    FD        +P  +  S   M++     G +  A+     
Sbjct: 1038 TSVLSVCKNSGLVREGWKYFDLMRSHYGVIPTIEHCS--CMVELLGRSGYLDEAWDFIRT 1095

Query: 292  MPDR-DAVAWTAMIS 305
            MP + DA  W A +S
Sbjct: 1096 MPLKPDATIWGAFLS 1110


>gi|449444429|ref|XP_004139977.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial-like [Cucumis sativus]
 gi|449475689|ref|XP_004154524.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial-like [Cucumis sativus]
          Length = 586

 Score =  279 bits (714), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 162/480 (33%), Positives = 272/480 (56%), Gaps = 23/480 (4%)

Query: 133 KNVISWNAMI-AGYVECCMMGEAIV--------LFEEMEERNVVTWTSMISGYCRAGEVE 183
           +N +S +A+  +  ++CC++  A+         +F    E       ++I+ Y + G ++
Sbjct: 9   RNRLSADAITYSELIKCCLVRGAVQQARLVHEHVFSNGYEPKTFLINTLINMYVKFGLLD 68

Query: 184 EGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEM--KGICDNGNNCN--VQSCN 239
           E   LF  MP +NVVSWT MI  ++ +  + ++L   I M  +G+  N    +  +++C+
Sbjct: 69  EARNLFDEMPDRNVVSWTTMISAYSNSNLNHKALDFLILMLREGVRPNMYTYSSVLRACD 128

Query: 240 SMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVA 299
            ++N     G + +   L   V VR     +++ID Y  +G+  +A  +F+ M   D V 
Sbjct: 129 GLLNLRQLHGSILKV-GLESDVFVR-----SALIDTYSKLGEQHDALNVFNEMITGDLVV 182

Query: 300 WTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLM 359
           W ++I G  QN    E  +L+  M+        +T + +  A    A ++LGRQ+H  ++
Sbjct: 183 WNSIIGGFAQNSDGDETLHLYKRMKRADFVADQSTLTSVLRACTGLALLELGRQVHVHVL 242

Query: 360 KTESESDLILENCLISMYAKCGVIDNAYNIFSNMVS-RDLVSWNSMVMGFSHHGLANETL 418
           K +   DLIL N L+ MY KCG +++A  +F+ M++ +D++SW++M+ G + +G + + L
Sbjct: 243 KYDQ--DLILNNALLDMYCKCGSLEDANLLFTRMMTEKDVISWSTMIAGLAQNGFSADAL 300

Query: 419 KVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINL 478
           K+FE+M   G  PN +T LG+L ACSHAGLV+ GW  F +M + + I PG EHY  +I+L
Sbjct: 301 KLFEAMKSKGPKPNYITILGVLFACSHAGLVNDGWYYFQSMKEHFGIDPGREHYGCIIDL 360

Query: 479 LGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPA 538
           LGRAGK+ EA + +  +  EPD   W  LLGAC     N ++A +AAK +L+LDP +A  
Sbjct: 361 LGRAGKLDEAVKLIHEMNHEPDAVTWRILLGACR-VHKNVDLAIYAAKEILKLDPADAGT 419

Query: 539 HVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
           +++L NIYA S +  +  ++R  M  +GV+K PGCSW+  +  +  F+ GD    ++ EI
Sbjct: 420 YILLSNIYANSQKWEDVAEVRRKMRTRGVKKDPGCSWIEVSKQVHAFILGDNSHPRIEEI 479



 Score =  102 bits (253), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 88/349 (25%), Positives = 157/349 (44%), Gaps = 58/349 (16%)

Query: 7   PKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGF-------------- 52
           PK+ +++  + I  Y K G +DEA+ LF  MP RNVVS+  M+S +              
Sbjct: 49  PKTFLIN--TLINMYVKFGLLDEARNLFDEMPDRNVVSWTTMISAYSNSNLNHKALDFLI 106

Query: 53  --LQNG----------------RLSEARRLFEEM----PERNVVSWTAMICGLADAGRVC 90
             L+ G                 L   R+L   +     E +V   +A+I   +  G   
Sbjct: 107 LMLREGVRPNMYTYSSVLRACDGLLNLRQLHGSILKVGLESDVFVRSALIDTYSKLGEQH 166

Query: 91  EARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCM 150
           +A  +F EM   ++V WNS++ G  +N + +E   ++  M   + ++  + +   +  C 
Sbjct: 167 DALNVFNEMITGDLVVWNSIIGGFAQNSDGDETLHLYKRMKRADFVADQSTLTSVLRACT 226

Query: 151 ------MGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRR-MPRKNVVSWTAM 203
                 +G  + +     +++++   +++  YC+ G +E+   LF R M  K+V+SW+ M
Sbjct: 227 GLALLELGRQVHVHVLKYDQDLILNNALLDMYCKCGSLEDANLLFTRMMTEKDVISWSTM 286

Query: 204 IGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQ----SCN--SMIN-GYIRFGRLEEAQN 256
           I G A NGF  ++L LF  MK      N   +     +C+   ++N G+  F  ++E   
Sbjct: 287 IAGLAQNGFSADALKLFEAMKSKGPKPNYITILGVLFACSHAGLVNDGWYYFQSMKEH-- 344

Query: 257 LFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNM-PDRDAVAWTAMI 304
            F   P R+   +  +ID     G++  A  L H M  + DAV W  ++
Sbjct: 345 -FGIDPGREH--YGCIIDLLGRAGKLDEAVKLIHEMNHEPDAVTWRILL 390


>gi|125572419|gb|EAZ13934.1| hypothetical protein OsJ_03861 [Oryza sativa Japonica Group]
          Length = 1031

 Score =  279 bits (714), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 160/532 (30%), Positives = 283/532 (53%), Gaps = 28/532 (5%)

Query: 61   ARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWN----SMVVGLIR 116
            A ++F+++       W  +I GLA +    +A   +++     +V  N     ++    R
Sbjct: 505  AHKVFDQIEAPTTFLWNILIRGLAQSDAPADAIAFYKKAQGGGMVPDNLTFPFILKACAR 564

Query: 117  NGELNEARKVFNSMP----IKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSM 172
               LNE  ++ N +     + ++   N++I  Y  C  +  A  +F+EM  ++VV+W S+
Sbjct: 565  INALNEGEQMHNHITKLGLLSDIFVSNSLIHLYAACGNLCYARSVFDEMVVKDVVSWNSL 624

Query: 173  ISGYCRAGEVEEGYCLFRRMPRK----------NVVSWTAMIGGFAWNGFHKESLLLFIE 222
            I GY +    ++   LF+ M  +           VVS    +G ++   +    ++ +IE
Sbjct: 625  ICGYSQCNRFKDILALFKLMQNEGVKADKVTMIKVVSACTRLGDYSMADY----MVRYIE 680

Query: 223  MKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQV 282
                 D     +V   N++++ + R G+L+ A+ +F  + VR+ ++  +MI  Y     +
Sbjct: 681  -----DYCIEVDVYLGNTLVDYFGRRGQLQSAEKVFFNMKVRNIVTMNAMIAAYAKGQDI 735

Query: 283  SNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAA 342
             +A  +F  +P +D ++W++MISG  Q   F +A  +F +M+   V P     + +  + 
Sbjct: 736  VSARKIFDQIPKKDLISWSSMISGYSQANHFSDALEIFRQMQRAKVKPDAIVIASVVSSC 795

Query: 343  GATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWN 402
                 +DLG+ +H  + +   ++D I+EN LI MY KCG    A  +F  M  +D +SWN
Sbjct: 796  AHLGALDLGKWVHEYVRRNNIKADTIMENSLIDMYMKCGSAKEALQVFKEMKEKDTLSWN 855

Query: 403  SMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDV 462
            S+++G +++G   E+L +F++ML  G  PN VTFLG+L AC++A LV  G + F +M  +
Sbjct: 856  SIIIGLANNGFEKESLNLFQAMLTEGFRPNGVTFLGVLIACANAKLVEEGLDHFESMKRL 915

Query: 463  YKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAE 522
            Y ++P  +HY  +++LLGRAG++++A  F+  +P +PD  +W  LLG+C    G+  IAE
Sbjct: 916  YSLEPQMKHYGCVVDLLGRAGQLEKALRFITEMPIDPDPVVWRILLGSCN-THGDVAIAE 974

Query: 523  HAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCS 574
               K+L EL+P N+  + +L N YA++ R  E   +R  M    VRK PGCS
Sbjct: 975  IVTKKLNELEPSNSGNYTLLSNAYASAHRWSEAMNVRQCMADTDVRKSPGCS 1026



 Score =  209 bits (533), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 127/404 (31%), Positives = 200/404 (49%), Gaps = 14/404 (3%)

Query: 163 ERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLL--- 219
           +R    W +++  Y      ++   LFR         W A    +A+    K    L   
Sbjct: 52  DRRPTPWHALLKAYSHGPHPQDALQLFRH------ARWHAADDTYAFTFALKACAGLGWP 105

Query: 220 --FIEMKG-ICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGY 276
              +++ G +   G         +++N YI  G L +++  F+ +PV++ +SW  +I G+
Sbjct: 106 RCCMQLHGLVVRKGFEFQTYVHTALVNVYILCGCLADSRMAFEEMPVKNAVSWNVVITGF 165

Query: 277 LSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFS 336
              G+V  A  LF  MP R+ V+W+ MI G  +    VEA  LF  M A G+ P   T  
Sbjct: 166 AGWGEVEYARLLFERMPCRNVVSWSGMIDGYTRACRPVEAVALFRRMMAEGISPSEITVL 225

Query: 337 VLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSR 396
            +  A      I +G  +H    K     D+ + N LI +YAK G I N+  +F  M+ R
Sbjct: 226 AVVPALSNVGKILIGEALHGYCEKEGLVWDVRVGNSLIDLYAKIGSIQNSLRVFDEMLDR 285

Query: 397 -DLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWEL 455
            +LVSW S++ GF+ HGL+ + +++F  M  +G  PN +TFL +L ACSH GLV +G   
Sbjct: 286 RNLVSWTSIISGFAMHGLSVKAVELFADMRRAGIRPNRITFLSVLHACSHGGLVEQGVAF 345

Query: 456 FNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCE 515
           F +M   Y I P  +H+  +I++LGRAG+++EAE+ +   P E +  +W  LLG C    
Sbjct: 346 FKSMIYEYNINPDVKHFGCIIDMLGRAGRLREAEQIIRDFPVEVNATVWRTLLGCCS-KY 404

Query: 516 GNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLR 559
           G  E+ E   K++L L+       VVL N+     R  +   +R
Sbjct: 405 GEVEMGERTMKKILALEREFGGDFVVLSNMLTELRRFSDAEIVR 448



 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 129/535 (24%), Positives = 228/535 (42%), Gaps = 91/535 (17%)

Query: 45  YNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNV 104
           + A+++ ++  G L+++R  FEEMP +N VSW  +I G A  G V  AR LFE MP RNV
Sbjct: 127 HTALVNVYILCGCLADSRMAFEEMPVKNAVSWNVVITGFAGWGEVEYARLLFERMPCRNV 186

Query: 105 VSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVEC------CMMGEAIVLF 158
           VSW+ M+ G  R     EA  +F  M  + +      +   V         ++GEA+  +
Sbjct: 187 VSWSGMIDGYTRACRPVEAVALFRRMMAEGISPSEITVLAVVPALSNVGKILIGEALHGY 246

Query: 159 EEMEER--NVVTWTSMISGYCRAGEVEEGYCLFRRM-PRKNVVSWTAMIGGFAWNGFHKE 215
            E E    +V    S+I  Y + G ++    +F  M  R+N+VSWT++I GFA +G   +
Sbjct: 247 CEKEGLVWDVRVGNSLIDLYAKIGSIQNSLRVFDEMLDRRNLVSWTSIISGFAMHGLSVK 306

Query: 216 SLLLFIEMK--GI-------------CDNGN------------------NCNVQSCNSMI 242
           ++ LF +M+  GI             C +G                   N +V+    +I
Sbjct: 307 AVELFADMRRAGIRPNRITFLSVLHACSHGGLVEQGVAFFKSMIYEYNINPDVKHFGCII 366

Query: 243 NGYIRFGRLEEAQNLFDTVPVR-DEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWT 301
           +   R GRL EA+ +    PV  +   W +++      G+V         M +R      
Sbjct: 367 DMLGRAGRLREAEQIIRDFPVEVNATVWRTLLGCCSKYGEV--------EMGERTMKKIL 418

Query: 302 AMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANI---DLGRQIHCVL 358
           A+      +  FV  + +  E+R      +         +  +  NI   +  +++H   
Sbjct: 419 ALEREFGGD--FVVLSNMLTELRRFSDAEIVRKLVDQRNSVKSFFNIVRMEAIKRLHAYY 476

Query: 359 MKTESESDLILENCLISMYAKCGVIDN----------AYNIFSNMVSRDLVSWNSMVMGF 408
           + +       L NC    YA   V+ +          A+ +F  + +     WN ++ G 
Sbjct: 477 IVSG------LYNC---HYAMSKVLRSYAILQPDLVFAHKVFDQIEAPTTFLWNILIRGL 527

Query: 409 SHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPG 468
           +      + +  ++     G  P+++TF  IL AC+    ++ G ++ N    + K+   
Sbjct: 528 AQSDAPADAIAFYKKAQGGGMVPDNLTFPFILKACARINALNEGEQMHN---HITKLGLL 584

Query: 469 PEHYV--SMINLLGRAGKIKEA----EEFVLRLPFEPDHRIWGALLGACGFCEGN 517
            + +V  S+I+L    G +  A    +E V++     D   W +L+  CG+ + N
Sbjct: 585 SDIFVSNSLIHLYAACGNLCYARSVFDEMVVK-----DVVSWNSLI--CGYSQCN 632



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 100/417 (23%), Positives = 171/417 (41%), Gaps = 79/417 (18%)

Query: 41  NVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMP 100
           ++   N+++  +   G L  AR +F+EM  ++VVSW ++ICG +   R  +   LF+ M 
Sbjct: 586 DIFVSNSLIHLYAACGNLCYARSVFDEMVVKDVVSWNSLICGYSQCNRFKDILALFKLMQ 645

Query: 101 ---------------------------------------ERNVVSWNSMVVGLIRNGELN 121
                                                  E +V   N++V    R G+L 
Sbjct: 646 NEGVKADKVTMIKVVSACTRLGDYSMADYMVRYIEDYCIEVDVYLGNTLVDYFGRRGQLQ 705

Query: 122 EARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGE 181
            A KVF +M ++N+++ NAMIA Y +   +  A  +F+++ ++++++W+SMISGY +A  
Sbjct: 706 SAEKVFFNMKVRNIVTMNAMIAAYAKGQDIVSARKIFDQIPKKDLISWSSMISGYSQANH 765

Query: 182 VEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGN-NCNVQSCNS 240
             +   +FR+M R  V     +I     +  H  +L L   +       N   +    NS
Sbjct: 766 FSDALEIFRQMQRAKVKPDAIVIASVVSSCAHLGALDLGKWVHEYVRRNNIKADTIMENS 825

Query: 241 MINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAW 300
           +I+ Y++ G  +EA  +F  +  +D +SW S                             
Sbjct: 826 LIDMYMKCGSAKEALQVFKEMKEKDTLSWNS----------------------------- 856

Query: 301 TAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQ--IHCVL 358
             +I GL  N    E+  LF  M   G  P   TF    G   A AN  L  +   H   
Sbjct: 857 --IIIGLANNGFEKESLNLFQAMLTEGFRPNGVTF---LGVLIACANAKLVEEGLDHFES 911

Query: 359 MKT--ESESDLILENCLISMYAKCGVIDNAYNIFSNM-VSRDLVSWNSMVMGFSHHG 412
           MK     E  +    C++ +  + G ++ A    + M +  D V W  ++   + HG
Sbjct: 912 MKRLYSLEPQMKHYGCVVDLLGRAGQLEKALRFITEMPIDPDPVVWRILLGSCNTHG 968



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 76/289 (26%), Positives = 150/289 (51%), Gaps = 18/289 (6%)

Query: 12  VHLTSSITKY-SKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPE 70
           V+L +++  Y  +RG +  A+ +F  M  RN+V+ NAM++ + +   +  AR++F+++P+
Sbjct: 688 VYLGNTLVDYFGRRGQLQSAEKVFFNMKVRNIVTMNAMIAAYAKGQDIVSARKIFDQIPK 747

Query: 71  RNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRN-----GELNEARK 125
           ++++SW++MI G + A    +A ++F +M +R  V  +++V+  + +     G L+  + 
Sbjct: 748 KDLISWSSMISGYSQANHFSDALEIFRQM-QRAKVKPDAIVIASVVSSCAHLGALDLGKW 806

Query: 126 VFNSMPIKNV----ISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGE 181
           V   +   N+    I  N++I  Y++C    EA+ +F+EM+E++ ++W S+I G    G 
Sbjct: 807 VHEYVRRNNIKADTIMENSLIDMYMKCGSAKEALQVFKEMKEKDTLSWNSIIIGLANNGF 866

Query: 182 VEEGYCLFRRMP----RKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQS 237
            +E   LF+ M     R N V++  ++   A     +E L  F  MK +           
Sbjct: 867 EKESLNLFQAMLTEGFRPNGVTFLGVLIACANAKLVEEGLDHFESMKRLYSLEPQMKHYG 926

Query: 238 CNSMINGYIRFGRLEEAQNLFDTVPVR-DEISWTSMIDGYLSVGQVSNA 285
           C   + G  R G+LE+A      +P+  D + W  ++    + G V+ A
Sbjct: 927 CVVDLLG--RAGQLEKALRFITEMPIDPDPVVWRILLGSCNTHGDVAIA 973



 Score = 72.0 bits (175), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 56/202 (27%), Positives = 95/202 (47%), Gaps = 24/202 (11%)

Query: 11  VVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEM-- 68
           +V + + I  Y+K   I  A+ +F  +P+++++S+++M+SG+ Q    S+A  +F +M  
Sbjct: 719 IVTMNAMIAAYAKGQDIVSARKIFDQIPKKDLISWSSMISGYSQANHFSDALEIFRQMQR 778

Query: 69  ----PERNVVSWTAMIC---GLADAGRVCEARKLFEEMPERN-----VVSWNSMVVGLIR 116
               P+  V++     C   G  D G      K   E   RN      +  NS++   ++
Sbjct: 779 AKVKPDAIVIASVVSSCAHLGALDLG------KWVHEYVRRNNIKADTIMENSLIDMYMK 832

Query: 117 NGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEER----NVVTWTSM 172
            G   EA +VF  M  K+ +SWN++I G        E++ LF+ M       N VT+  +
Sbjct: 833 CGSAKEALQVFKEMKEKDTLSWNSIIIGLANNGFEKESLNLFQAMLTEGFRPNGVTFLGV 892

Query: 173 ISGYCRAGEVEEGYCLFRRMPR 194
           +     A  VEEG   F  M R
Sbjct: 893 LIACANAKLVEEGLDHFESMKR 914



 Score = 62.0 bits (149), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 55/218 (25%), Positives = 103/218 (47%), Gaps = 20/218 (9%)

Query: 7   PKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAM-----LSGFLQNGRLSEA 61
           PK  ++  +S I+ YS+     +A  +F+ M QR  V  +A+     +S     G L   
Sbjct: 746 PKKDLISWSSMISGYSQANHFSDALEIFRQM-QRAKVKPDAIVIASVVSSCAHLGALDLG 804

Query: 62  RRLFEEMPERNVVSWTAMICGLAD----AGRVCEARKLFEEMPERNVVSWNSMVVGLIRN 117
           + + E +   N+ + T M   L D     G   EA ++F+EM E++ +SWNS+++GL  N
Sbjct: 805 KWVHEYVRRNNIKADTIMENSLIDMYMKCGSAKEALQVFKEMKEKDTLSWNSIIIGLANN 864

Query: 118 GELNEARKVFNSMPIK----NVISWNAMIAGYVECCMMGEAIVLFEEME-----ERNVVT 168
           G   E+  +F +M  +    N +++  ++       ++ E +  FE M+     E  +  
Sbjct: 865 GFEKESLNLFQAMLTEGFRPNGVTFLGVLIACANAKLVEEGLDHFESMKRLYSLEPQMKH 924

Query: 169 WTSMISGYCRAGEVEEGYCLFRRMP-RKNVVSWTAMIG 205
           +  ++    RAG++E+       MP   + V W  ++G
Sbjct: 925 YGCVVDLLGRAGQLEKALRFITEMPIDPDPVVWRILLG 962



 Score = 52.4 bits (124), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 49/193 (25%), Positives = 85/193 (44%), Gaps = 19/193 (9%)

Query: 3    ERNHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEAR 62
             RN+ K+  +   S I  Y K G   EA  +F+ M +++ +S+N+++ G   NG   E+ 
Sbjct: 812  RRNNIKADTIMENSLIDMYMKCGSAKEALQVFKEMKEKDTLSWNSIIIGLANNGFEKESL 871

Query: 63   RLFEEMPER----NVVSWTAMICGLADAGRVCEARKLFEEMP-----ERNVVSWNSMVVG 113
             LF+ M       N V++  ++   A+A  V E    FE M      E  +  +  +V  
Sbjct: 872  NLFQAMLTEGFRPNGVTFLGVLIACANAKLVEEGLDHFESMKRLYSLEPQMKHYGCVVDL 931

Query: 114  LIRNGELNEARKVFNSMPIK-NVISWNAMIAGYVECCMMGEAIVL------FEEMEERNV 166
            L R G+L +A +    MPI  + + W  ++     C   G+  +         E+E  N 
Sbjct: 932  LGRAGQLEKALRFITEMPIDPDPVVWRILLGS---CNTHGDVAIAEIVTKKLNELEPSNS 988

Query: 167  VTWTSMISGYCRA 179
              +T + + Y  A
Sbjct: 989  GNYTLLSNAYASA 1001


>gi|449502858|ref|XP_004161763.1| PREDICTED: uncharacterized LOC101222622 [Cucumis sativus]
          Length = 2355

 Score =  279 bits (714), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 165/494 (33%), Positives = 262/494 (53%), Gaps = 20/494 (4%)

Query: 117 NGELNEARKVFNS-MPIKNVISWNAMIAGYVECCMMGEAIVLFEEM------EERNVVTW 169
           +G L  +  +FN  +   N+ ++NA++  + +       I  F            +  T+
Sbjct: 71  HGNLRHSVLIFNHFLSFPNIFAYNALLKAFSQHNAWHTTISYFNNQLVLPNAPNPDEYTF 130

Query: 170 TSMISGYCRAGEVEEG---YCLFRRMP-RKNVVSWTAMIGGFAWNGFHKESLLLFIEMKG 225
           TS++       +V EG   +C   +     N+    +++  +   G +  +  LF EM  
Sbjct: 131 TSVLKACAGLAQVLEGQKVHCFVTKYGCESNLFVRNSLVDLYFKVGCNCIAQKLFDEMVV 190

Query: 226 ICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNA 285
                   +V S N++I+GY   G +++A+ +FD +  ++ +SW++MI GY  VG +  A
Sbjct: 191 R-------DVVSWNTLISGYCFSGMVDKARMVFDGMMEKNLVSWSTMISGYARVGNLEEA 243

Query: 286 YYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHG-VPPLNATFSVLFGAAGA 344
             LF NMP R+ V+W AMI+G  QNE + +A  LF +M+  G + P + T   +  A   
Sbjct: 244 RQLFENMPMRNVVSWNAMIAGYAQNEKYADAIELFRQMQHEGGLAPNDVTLVSVLSACAH 303

Query: 345 TANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSM 404
              +DLG+ IH  + + + E  L L N L  MYAKCG +  A  +F  M  RD++SW+ +
Sbjct: 304 LGALDLGKWIHRFIRRNKIEVGLFLGNALADMYAKCGCVLEAKGVFHEMHERDVISWSII 363

Query: 405 VMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYK 464
           +MG + +G ANE    F  M+E G  PN ++F+G+L+AC+HAGLV +G E F+ M  VY 
Sbjct: 364 IMGLAMYGYANEAFNFFAEMIEDGLEPNDISFMGLLTACTHAGLVDKGLEYFDMMPQVYG 423

Query: 465 IQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHA 524
           I P  EHY  +++LL RAG++ +AE  +  +P +P+  +WGALLG C   + +AE  E  
Sbjct: 424 ITPKIEHYGCVVDLLSRAGRLDQAESLINSMPMQPNVIVWGALLGGCRIYK-DAERGERV 482

Query: 525 AKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQM 584
             R+LELD  ++ + V L N+YA+ GR  +    R+ M      K PGCSW+  N  +  
Sbjct: 483 VWRILELDSNHSGSLVYLANVYASMGRLDDAASCRLRMRDNKSMKTPGCSWIEINNSVYE 542

Query: 585 FLSGDKIPAQVAEI 598
           F  GD    Q   I
Sbjct: 543 FFMGDSSHPQSLRI 556



 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 92/314 (29%), Positives = 154/314 (49%), Gaps = 49/314 (15%)

Query: 39  QRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEE 98
           + N+   N+++  + + G    A++LF+EM  R+VVSW  +I G   +G V +AR +F+ 
Sbjct: 159 ESNLFVRNSLVDLYFKVGCNCIAQKLFDEMVVRDVVSWNTLISGYCFSGMVDKARMVFDG 218

Query: 99  MPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLF 158
           M E+N+VSW++M+ G  R G L EAR++F +MP++NV+SWNAMIAGY +     +AI LF
Sbjct: 219 MMEKNLVSWSTMISGYARVGNLEEARQLFENMPMRNVVSWNAMIAGYAQNEKYADAIELF 278

Query: 159 EEMEER-----NVVTWTSMISG-----------------------------------YCR 178
            +M+       N VT  S++S                                    Y +
Sbjct: 279 RQMQHEGGLAPNDVTLVSVLSACAHLGALDLGKWIHRFIRRNKIEVGLFLGNALADMYAK 338

Query: 179 AGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSC 238
            G V E   +F  M  ++V+SW+ +I G A  G+  E+   F EM    ++G   N  S 
Sbjct: 339 CGCVLEAKGVFHEMHERDVISWSIIIMGLAMYGYANEAFNFFAEM---IEDGLEPNDISF 395

Query: 239 NSMINGYIRFGRLEEAQNLFDTVPVRDEIS-----WTSMIDGYLSVGQVSNAYYLFHNMP 293
             ++      G +++    FD +P    I+     +  ++D     G++  A  L ++MP
Sbjct: 396 MGLLTACTHAGLVDKGLEYFDMMPQVYGITPKIEHYGCVVDLLSRAGRLDQAESLINSMP 455

Query: 294 -DRDAVAWTAMISG 306
              + + W A++ G
Sbjct: 456 MQPNVIVWGALLGG 469



 Score =  115 bits (288), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 83/280 (29%), Positives = 144/280 (51%), Gaps = 18/280 (6%)

Query: 11  VVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPE 70
           VV   + I+ Y   G +D+A+ +F  M ++N+VS++ M+SG+ + G L EAR+LFE MP 
Sbjct: 193 VVSWNTLISGYCFSGMVDKARMVFDGMMEKNLVSWSTMISGYARVGNLEEARQLFENMPM 252

Query: 71  RNVVSWTAMICGLADAGRVCEARKLFEEMPER-----NVVSWNSMVVGLIRNGELNEARK 125
           RNVVSW AMI G A   +  +A +LF +M        N V+  S++      G L+  + 
Sbjct: 253 RNVVSWNAMIAGYAQNEKYADAIELFRQMQHEGGLAPNDVTLVSVLSACAHLGALDLGKW 312

Query: 126 VFNSMPIKNVIS-----WNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAG 180
           +   +  +N I       NA+   Y +C  + EA  +F EM ER+V++W+ +I G    G
Sbjct: 313 IHRFIR-RNKIEVGLFLGNALADMYAKCGCVLEAKGVFHEMHERDVISWSIIIMGLAMYG 371

Query: 181 EVEEGYCLFRRMPRK----NVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQ 236
              E +  F  M       N +S+  ++      G   + L  F  M  +   G    ++
Sbjct: 372 YANEAFNFFAEMIEDGLEPNDISFMGLLTACTHAGLVDKGLEYFDMMPQV--YGITPKIE 429

Query: 237 SCNSMINGYIRFGRLEEAQNLFDTVPVR-DEISWTSMIDG 275
               +++   R GRL++A++L +++P++ + I W +++ G
Sbjct: 430 HYGCVVDLLSRAGRLDQAESLINSMPMQPNVIVWGALLGG 469


>gi|297734119|emb|CBI15366.3| unnamed protein product [Vitis vinifera]
          Length = 783

 Score =  279 bits (714), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 168/537 (31%), Positives = 283/537 (52%), Gaps = 20/537 (3%)

Query: 77  TAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSM-PIKNV 135
           T +I   +  G   ++R +F+++  +N+  WN++V    RN    +A  +F+ +  +   
Sbjct: 145 TRIITMYSMCGSPSDSRMVFDKLRRKNLFQWNAIVSAYTRNELFEDAMSIFSELISVTEH 204

Query: 136 ISWNAMIAGYVECCM------MGEAIV-LFEEME-ERNVVTWTSMISGYCRAGEVEEGYC 187
              N  +   ++ C       +G+ I  +  +M+   +V    ++I+ Y + G VEE   
Sbjct: 205 KPDNFTLPCVIKACAGLLDLGLGQIIHGMATKMDLVSDVFVGNALIAMYGKCGLVEEAVK 264

Query: 188 -LFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYI 246
            +F  M  K V SW A++ G+A N   +++L L+++M    D+G + +  +  S++    
Sbjct: 265 RVFDLMDTKTVSSWNALLCGYAQNSDPRKALDLYLQMT---DSGLDPDWFTIGSLLLACS 321

Query: 247 RFGRLEEAQN-----LFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWT 301
           R   L   +      L + + V D     S++  Y+  G+   A  LF  M  R  V+W 
Sbjct: 322 RMKSLHYGEEIHGFALRNGLAV-DPFIGISLLSLYICCGKPFAAQVLFDGMEHRSLVSWN 380

Query: 302 AMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKT 361
            MI+G  QN L  EA  LF +M + G+ P       + GA    + + LG+++HC  +K 
Sbjct: 381 VMIAGYSQNGLPDEAINLFRQMLSDGIQPYEIAIMCVCGACSQLSALRLGKELHCFALKA 440

Query: 362 ESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVF 421
               D+ + + +I MYAK G I  +  IF  +  +D+ SWN ++ G+  HG   E L++F
Sbjct: 441 HLTEDIFVSSSIIDMYAKGGCIGLSQRIFDRLREKDVASWNVIIAGYGIHGRGKEALELF 500

Query: 422 ESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGR 481
           E ML  G  P+  TF GIL ACSHAGLV  G E FN M +++ I+P  EHY  ++++LGR
Sbjct: 501 EKMLRLGLKPDDFTFTGILMACSHAGLVEDGLEYFNQMLNLHNIEPKLEHYTCVVDMLGR 560

Query: 482 AGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVV 541
           AG+I +A   +  +P +PD RIW +LL +C    GN  + E  A +LLEL+P     +V+
Sbjct: 561 AGRIDDALRLIEEMPGDPDSRIWSSLLSSCRI-HGNLGLGEKVANKLLELEPEKPENYVL 619

Query: 542 LCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
           + N++A SG+  +  ++R  M   G++K  GCSW+   G +  FL GD++  ++ E+
Sbjct: 620 ISNLFAGSGKWDDVRRVRGRMKDIGLQKDAGCSWIEVGGKVHNFLIGDEMLPELEEV 676



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 118/525 (22%), Positives = 216/525 (41%), Gaps = 95/525 (18%)

Query: 15  TSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEM------ 68
           T  IT YS  G   +++ +F  + ++N+  +NA++S + +N    +A  +F E+      
Sbjct: 145 TRIITMYSMCGSPSDSRMVFDKLRRKNLFQWNAIVSAYTRNELFEDAMSIFSELISVTEH 204

Query: 69  -PERNVVSWTAMIC-GLADAGRVCEARKLFEEMP-ERNVVSWNSMVVGLIRNGELNEA-R 124
            P+   +      C GL D G       +  +M    +V   N+++    + G + EA +
Sbjct: 205 KPDNFTLPCVIKACAGLLDLGLGQIIHGMATKMDLVSDVFVGNALIAMYGKCGLVEEAVK 264

Query: 125 KVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNV-VTW-------------- 169
           +VF+ M  K V SWNA++ GY +     +A+ L+ +M +  +   W              
Sbjct: 265 RVFDLMDTKTVSSWNALLCGYAQNSDPRKALDLYLQMTDSGLDPDWFTIGSLLLACSRMK 324

Query: 170 ------------------------TSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIG 205
                                    S++S Y   G+      LF  M  +++VSW  MI 
Sbjct: 325 SLHYGEEIHGFALRNGLAVDPFIGISLLSLYICCGKPFAAQVLFDGMEHRSLVSWNVMIA 384

Query: 206 GFAWNGFHKESLLLFIEM--KGI--CDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTV 261
           G++ NG   E++ LF +M   GI   +    C   +C+ +    +R G+ E         
Sbjct: 385 GYSQNGLPDEAINLFRQMLSDGIQPYEIAIMCVCGACSQL--SALRLGK-ELHCFALKAH 441

Query: 262 PVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFM 321
              D    +S+ID Y   G +  +  +F  + ++D  +W  +I+G   +    EA  LF 
Sbjct: 442 LTEDIFVSSSIIDMYAKGGCIGLSQRIFDRLREKDVASWNVIIAGYGIHGRGKEALELFE 501

Query: 322 EMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTES-ESDLILENCLISMYAKC 380
           +M   G+ P + TF+ +  A      ++ G +    ++   + E  L    C++ M  + 
Sbjct: 502 KMLRLGLKPDDFTFTGILMACSHAGLVEDGLEYFNQMLNLHNIEPKLEHYTCVVDMLGRA 561

Query: 381 GVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGIL 440
           G ID+A                               L++ E M      P+S  +  +L
Sbjct: 562 GRIDDA-------------------------------LRLIEEM---PGDPDSRIWSSLL 587

Query: 441 SACSHAGLVSRGWELFNAMFDVYKIQP-GPEHYVSMINLLGRAGK 484
           S+C   G +  G ++ N + +   ++P  PE+YV + NL   +GK
Sbjct: 588 SSCRIHGNLGLGEKVANKLLE---LEPEKPENYVLISNLFAGSGK 629



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 99/412 (24%), Positives = 176/412 (42%), Gaps = 55/412 (13%)

Query: 30  AKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRV 89
           A+ LF  M  R++VS+N M++G+ QNG   EA  LF +M    +  +   I  +  A   
Sbjct: 364 AQVLFDGMEHRSLVSWNVMIAGYSQNGLPDEAINLFRQMLSDGIQPYEIAIMCVCGACSQ 423

Query: 90  CEARKLFEEMP--------ERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAM 141
             A +L +E+           ++   +S++    + G +  ++++F+ +  K+V SWN +
Sbjct: 424 LSALRLGKELHCFALKAHLTEDIFVSSSIIDMYAKGGCIGLSQRIFDRLREKDVASWNVI 483

Query: 142 IAGYVECCMMGEAIVLFEEM----EERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNV 197
           IAGY       EA+ LFE+M     + +  T+T ++     AG VE+G   F +M   + 
Sbjct: 484 IAGYGIHGRGKEALELFEKMLRLGLKPDDFTFTGILMACSHAGLVEDGLEYFNQMLNLHN 543

Query: 198 VS-----WTAMIGGFAWNGFHKESLLLFIEMKGICDNGN-NCNVQSCNSMINGYIRFGRL 251
           +      +T ++      G   ++L L  EM G  D+   +  + SC   I+G +  G  
Sbjct: 544 IEPKLEHYTCVVDMLGRAGRIDDALRLIEEMPGDPDSRIWSSLLSSCR--IHGNLGLGE- 600

Query: 252 EEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPD----RDAVAWTAMISGL 307
           + A  L +  P + E ++  + + +   G+  +   +   M D    +DA      + G 
Sbjct: 601 KVANKLLELEPEKPE-NYVLISNLFAGSGKWDDVRRVRGRMKDIGLQKDAGCSWIEVGGK 659

Query: 308 VQNELF----------VEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCV 357
           V N L           V  T+  +E++   +     T SVL          DL  +    
Sbjct: 660 VHNFLIGDEMLPELEEVRETWRRLEVKISSIGYTPDTGSVLH---------DLEEEDKIG 710

Query: 358 LMKTESESDLILENCL-------ISMYAK---CGVIDNAYNIFSNMVSRDLV 399
           +++  SE   I    L       + +Y     CG   NA    S +V+RD+V
Sbjct: 711 ILRGHSEKLAISFGLLNTAKGLPVRVYKNLRICGDCHNAAKFISKVVNRDIV 762



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 49/184 (26%), Positives = 96/184 (52%), Gaps = 11/184 (5%)

Query: 337 VLFGAAGATANIDLGRQIH-CVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVS 395
           VL  A G   +I++GR++H  V   T+  +D +L   +I+MY+ CG   ++  +F  +  
Sbjct: 110 VLLQACGQRKDIEVGRRLHEMVSASTQFCNDFVLNTRIITMYSMCGSPSDSRMVFDKLRR 169

Query: 396 RDLVSWNSMVMGFSHHGLANETLKVFESMLESGTH-PNSVTFLGILSACSHAGLVSRGW- 453
           ++L  WN++V  ++ + L  + + +F  ++    H P++ T   ++ AC  AGL+  G  
Sbjct: 170 KNLFQWNAIVSAYTRNELFEDAMSIFSELISVTEHKPDNFTLPCVIKAC--AGLLDLGLG 227

Query: 454 ELFNAMFDVYKIQPGPEHYV--SMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGAC 511
           ++ + M    K+    + +V  ++I + G+ G ++EA + V  L        W ALL  C
Sbjct: 228 QIIHGM--ATKMDLVSDVFVGNALIAMYGKCGLVEEAVKRVFDLMDTKTVSSWNALL--C 283

Query: 512 GFCE 515
           G+ +
Sbjct: 284 GYAQ 287



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 38/142 (26%), Positives = 72/142 (50%), Gaps = 16/142 (11%)

Query: 6   HPKSLVVHLT-------SSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRL 58
           H  +L  HLT       S I  Y+K G I  ++ +F  + +++V S+N +++G+  +GR 
Sbjct: 434 HCFALKAHLTEDIFVSSSIIDMYAKGGCIGLSQRIFDRLREKDVASWNVIIAGYGIHGRG 493

Query: 59  SEARRLFEEM----PERNVVSWTAMICGLADAGRVCEARKLFEEM-----PERNVVSWNS 109
            EA  LFE+M     + +  ++T ++   + AG V +  + F +M      E  +  +  
Sbjct: 494 KEALELFEKMLRLGLKPDDFTFTGILMACSHAGLVEDGLEYFNQMLNLHNIEPKLEHYTC 553

Query: 110 MVVGLIRNGELNEARKVFNSMP 131
           +V  L R G +++A ++   MP
Sbjct: 554 VVDMLGRAGRIDDALRLIEEMP 575


>gi|115464255|ref|NP_001055727.1| Os05g0455900 [Oryza sativa Japonica Group]
 gi|53749358|gb|AAU90217.1| unknow protein [Oryza sativa Japonica Group]
 gi|113579278|dbj|BAF17641.1| Os05g0455900 [Oryza sativa Japonica Group]
 gi|222631826|gb|EEE63958.1| hypothetical protein OsJ_18783 [Oryza sativa Japonica Group]
          Length = 874

 Score =  279 bits (714), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 186/636 (29%), Positives = 311/636 (48%), Gaps = 57/636 (8%)

Query: 6   HPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLF 65
           H +  V   TS +  Y K G + E   +F+ MP++NVV++ ++L+G       SE   LF
Sbjct: 130 HDRGEVSAGTSLVDMYMKCGSVCEGIEVFEGMPKKNVVTWTSLLTGCAHAQMHSEVMALF 189

Query: 66  EEMPER----NVVSWTAMICGLADAGRVCEARKLFEEMPE----RNVVSWNSMVVGLIRN 117
             M       N  ++ +++  +A  G +   +++  +  +     +V   NS++    + 
Sbjct: 190 FRMRAEGIWPNPFTFASVLSAVASQGALDLGQRVHAQSVKFGCRSSVFVCNSLMNMYAKC 249

Query: 118 GELNEARKVFNSMPIKNVISWNAMIAGYV--ECCMMGEAIVLFEE-------MEERNVVT 168
           G + +A+ VFN M  ++++SWN ++AG    EC +  EA+ LF E       M +    T
Sbjct: 250 GLVEDAKSVFNWMETRDMVSWNTLMAGLQLNECEL--EALQLFHESRATMGKMTQSTYAT 307

Query: 169 --------------------------------WTSMISGYCRAGEVEEGYCLFRRMP-RK 195
                                            T++   Y + GE+ +   +F      +
Sbjct: 308 VIKLCANLKQLALARQLHSCVLKHGFHLTGNVMTALADAYSKCGELADALNIFSMTTGSR 367

Query: 196 NVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQ 255
           NVVSWTA+I G   NG    +++LF  M+   ++    N  + ++M+   +     +   
Sbjct: 368 NVVSWTAIISGCIQNGDIPLAVVLFSRMR---EDRVMPNEFTYSAMLKASLSILPPQIHA 424

Query: 256 NLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVE 315
            +  T         T+++  Y   G   +A  +F  +  +D VAW+AM+S   Q      
Sbjct: 425 QVIKTNYQHIPFVGTALLASYSKFGSTEDALSIFKMIEQKDVVAWSAMLSCHAQAGDCEG 484

Query: 316 ATYLFMEMRAHGVPPLNATFS-VLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLI 374
           ATYLF +M   G+ P   T S V+   A  +A +D GRQ H + +K      + + + L+
Sbjct: 485 ATYLFNKMAIQGIKPNEFTISSVIDACACPSAGVDQGRQFHAISIKYRYHDAICVSSALV 544

Query: 375 SMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSV 434
           SMY++ G ID+A  +F     RDLVSWNSM+ G++ HG + + ++ F  M  SG   + V
Sbjct: 545 SMYSRKGNIDSAQIVFERQTDRDLVSWNSMISGYAQHGYSMKAIETFRQMEASGIQMDGV 604

Query: 435 TFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLR 494
           TFL ++  C+H GLV  G + F++M   +KI P  EHY  M++L  RAGK+ E    +  
Sbjct: 605 TFLAVIMGCTHNGLVVEGQQYFDSMVRDHKINPTMEHYACMVDLYSRAGKLDETMSLIRD 664

Query: 495 LPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVE 554
           +PF     +W  LLGAC     N E+ + +A +LL L+P ++  +V+L NIYAA+G+  E
Sbjct: 665 MPFPAGAMVWRTLLGACRV-HKNVELGKFSADKLLSLEPHDSSTYVLLSNIYAAAGKWKE 723

Query: 555 EHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDK 590
             ++R  M  + V+K  GCSW+     +  F++ DK
Sbjct: 724 RDEVRKLMDYRKVKKEAGCSWIQIKNKVHSFIAFDK 759



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 127/512 (24%), Positives = 228/512 (44%), Gaps = 34/512 (6%)

Query: 21  YSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMP--------ERN 72
           Y++RG + E    F +  +  V+  +A LS  L+  R    R L E++         +R 
Sbjct: 74  YARRGMVLEVLDQFSVARRGGVLVDSATLSCVLKACRSVPDRVLGEQLHCLCVKCGHDRG 133

Query: 73  VVSW-TAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMP 131
            VS  T+++      G VCE  ++FE MP++NVV+W S++ G       +E   +F  M 
Sbjct: 134 EVSAGTSLVDMYMKCGSVCEGIEVFEGMPKKNVVTWTSLLTGCAHAQMHSEVMALFFRMR 193

Query: 132 IKNVISWNAMIAGYVECCMMGEAIVLFEEMEER--------NVVTWTSMISGYCRAGEVE 183
            + +       A  +       A+ L + +  +        +V    S+++ Y + G VE
Sbjct: 194 AEGIWPNPFTFASVLSAVASQGALDLGQRVHAQSVKFGCRSSVFVCNSLMNMYAKCGLVE 253

Query: 184 EGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMIN 243
           +   +F  M  +++VSW  ++ G   N    E+L LF E +            +  ++I 
Sbjct: 254 DAKSVFNWMETRDMVSWNTLMAGLQLNECELEALQLFHESRATMGKMTQ---STYATVIK 310

Query: 244 GYIRFGRLEEAQNLFDTVPVR----DEISWTSMIDGYLSVGQVSNAYYLFH-NMPDRDAV 298
                 +L  A+ L   V            T++ D Y   G++++A  +F      R+ V
Sbjct: 311 LCANLKQLALARQLHSCVLKHGFHLTGNVMTALADAYSKCGELADALNIFSMTTGSRNVV 370

Query: 299 AWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVL 358
           +WTA+ISG +QN     A  LF  MR   V P   T+S +  A+ +     L  QIH  +
Sbjct: 371 SWTAIISGCIQNGDIPLAVVLFSRMREDRVMPNEFTYSAMLKASLSI----LPPQIHAQV 426

Query: 359 MKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETL 418
           +KT  +    +   L++ Y+K G  ++A +IF  +  +D+V+W++M+   +  G      
Sbjct: 427 IKTNYQHIPFVGTALLASYSKFGSTEDALSIFKMIEQKDVVAWSAMLSCHAQAGDCEGAT 486

Query: 419 KVFESMLESGTHPNSVTFLGILSACS--HAGLVSRGWELFNAMFDVYKIQPGPEHYVSMI 476
            +F  M   G  PN  T   ++ AC+   AG V +G + F+A+   Y+         +++
Sbjct: 487 YLFNKMAIQGIKPNEFTISSVIDACACPSAG-VDQGRQ-FHAISIKYRYHDAICVSSALV 544

Query: 477 NLLGRAGKIKEAEEFVLRLPFEPDHRIWGALL 508
           ++  R G I  A + V     + D   W +++
Sbjct: 545 SMYSRKGNIDSA-QIVFERQTDRDLVSWNSMI 575



 Score =  122 bits (305), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 101/394 (25%), Positives = 167/394 (42%), Gaps = 74/394 (18%)

Query: 92  ARKLFEEMPERNV-VSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCM 150
           AR   +E+P R+  V  N ++    R G + E    F+      V+  +A ++  ++ C 
Sbjct: 51  ARYPLDEIPRRDAAVGANRVLFDYARRGMVLEVLDQFSVARRGGVLVDSATLSCVLKACR 110

Query: 151 MGEAIVLFEEM---------EERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWT 201
                VL E++         +   V   TS++  Y + G V EG  +F  MP+KNVV+WT
Sbjct: 111 SVPDRVLGEQLHCLCVKCGHDRGEVSAGTSLVDMYMKCGSVCEGIEVFEGMPKKNVVTWT 170

Query: 202 AMIGGFAWNGFHKESLLLFIEMK---------------------GICDNGNNCNVQS--- 237
           +++ G A    H E + LF  M+                     G  D G   + QS   
Sbjct: 171 SLLTGCAHAQMHSEVMALFFRMRAEGIWPNPFTFASVLSAVASQGALDLGQRVHAQSVKF 230

Query: 238 --------CNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLF 289
                   CNS++N Y + G +E+A+++F+ +  RD +SW +                  
Sbjct: 231 GCRSSVFVCNSLMNMYAKCGLVEDAKSVFNWMETRDMVSWNT------------------ 272

Query: 290 HNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANID 349
                        +++GL  NE  +EA  LF E RA       +T++ +         + 
Sbjct: 273 -------------LMAGLQLNECELEALQLFHESRATMGKMTQSTYATVIKLCANLKQLA 319

Query: 350 LGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMV-SRDLVSWNSMVMGF 408
           L RQ+H  ++K        +   L   Y+KCG + +A NIFS    SR++VSW +++ G 
Sbjct: 320 LARQLHSCVLKHGFHLTGNVMTALADAYSKCGELADALNIFSMTTGSRNVVSWTAIISGC 379

Query: 409 SHHGLANETLKVFESMLESGTHPNSVTFLGILSA 442
             +G     + +F  M E    PN  T+  +L A
Sbjct: 380 IQNGDIPLAVVLFSRMREDRVMPNEFTYSAMLKA 413



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 54/211 (25%), Positives = 97/211 (45%), Gaps = 11/211 (5%)

Query: 285 AYYLFHNMPDRDA-VAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAG 343
           A Y    +P RDA V    ++    +  + +E    F   R  GV   +AT S +  A  
Sbjct: 51  ARYPLDEIPRRDAAVGANRVLFDYARRGMVLEVLDQFSVARRGGVLVDSATLSCVLKACR 110

Query: 344 ATANIDLGRQIHCVLMKT-ESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWN 402
           +  +  LG Q+HC+ +K      ++     L+ MY KCG +     +F  M  +++V+W 
Sbjct: 111 SVPDRVLGEQLHCLCVKCGHDRGEVSAGTSLVDMYMKCGSVCEGIEVFEGMPKKNVVTWT 170

Query: 403 SMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDV 462
           S++ G +H  + +E + +F  M   G  PN  TF  +LSA +  G +  G  +       
Sbjct: 171 SLLTGCAHAQMHSEVMALFFRMRAEGIWPNPFTFASVLSAVASQGALDLGQRVH-----A 225

Query: 463 YKIQPGPEHYV----SMINLLGRAGKIKEAE 489
             ++ G    V    S++N+  + G +++A+
Sbjct: 226 QSVKFGCRSSVFVCNSLMNMYAKCGLVEDAK 256


>gi|218189919|gb|EEC72346.1| hypothetical protein OsI_05579 [Oryza sativa Indica Group]
          Length = 545

 Score =  279 bits (714), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 154/447 (34%), Positives = 253/447 (56%), Gaps = 2/447 (0%)

Query: 145 YVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRR-MPRKNVVSWTAM 203
           Y E     +A  LF+E+   +++++TS++S + +     +   +F   +   +     A 
Sbjct: 63  YAEFGRPADAGRLFDEIPHPDIISFTSLMSLHLKLDHHWKAISVFSHAIASGHRPDGFAA 122

Query: 204 IGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPV 263
           +G  + +G   +  +  +    I   G +  +  CN++++ Y R G+ E A+ +FD + V
Sbjct: 123 VGALSASGGLGDQRIGSVVHGLIFRCGLDSELVVCNALVDMYCRCGKFEPARTVFDRMLV 182

Query: 264 RDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEM 323
           +DE++W SM+ GY+    V +A   F+ MP +  V+WTA+I+G VQ++  ++A  LF +M
Sbjct: 183 KDEVTWGSMLYGYMKCVGVDSALSFFYQMPMKSTVSWTALITGHVQDKQPIQALELFGKM 242

Query: 324 RAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVI 383
              G  P + T   +  A      +DLGR IH    K+ + +++I+ N L+ MYAK G I
Sbjct: 243 LLEGHRPNHITIVGVLSACADIGALDLGRAIHGYGSKSNATTNIIVTNALMDMYAKSGSI 302

Query: 384 DNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSAC 443
            +A+++F  +  +D  +W +M+  F+  G   + +++F  ML SG  PNSVTF+ +LSAC
Sbjct: 303 ASAFSVFEEVQMKDAFTWTTMISSFTVQGNGRKAVELFWDMLRSGILPNSVTFVSVLSAC 362

Query: 444 SHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRI 503
           SHAGL+  G ELF+ M +VY I P  EHY  M++LLGR G ++EAE  +  +  EPD  I
Sbjct: 363 SHAGLIQEGRELFDKMREVYHIDPRLEHYGCMVDLLGRGGLLEEAEALIDHMDVEPDIVI 422

Query: 504 WGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMG 563
           W +LL AC    GN  +AE A K +++ +P +   +V+L N+YA S R  E   +R  M 
Sbjct: 423 WRSLLSAC-LAHGNDRLAEIAGKEIIKREPGDDGVYVLLWNMYALSNRWKEALDMRKQML 481

Query: 564 LKGVRKVPGCSWLMRNGGIQMFLSGDK 590
            + + K PGCSW+  +G +  FL  DK
Sbjct: 482 SRKIYKKPGCSWIEVDGVVHEFLVEDK 508



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 96/432 (22%), Positives = 187/432 (43%), Gaps = 85/432 (19%)

Query: 29  EAKALFQ-LMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMIC------ 81
            A+AL   L P +  +S   +   + + GR ++A RLF+E+P  +++S+T+++       
Sbjct: 40  HAQALTHGLHPNQQSISCK-IFRSYAEFGRPADAGRLFDEIPHPDIISFTSLMSLHLKLD 98

Query: 82  --------------------GLADAGRVCEARKLFEEMP-------------ERNVVSWN 108
                               G A  G +  +  L ++               +  +V  N
Sbjct: 99  HHWKAISVFSHAIASGHRPDGFAAVGALSASGGLGDQRIGSVVHGLIFRCGLDSELVVCN 158

Query: 109 SMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVT 168
           ++V    R G+   AR VF+ M +K+ ++W +M+ GY++C  +  A+  F +M  ++ V+
Sbjct: 159 ALVDMYCRCGKFEPARTVFDRMLVKDEVTWGSMLYGYMKCVGVDSALSFFYQMPMKSTVS 218

Query: 169 WTSMISGYCRAGEVEEGYCLFRRM----PRKNVVSWTAMIGGFAWNGFHKESLLLFIEMK 224
           WT++I+G+ +  +  +   LF +M     R N ++   ++   A  G    +L L   + 
Sbjct: 219 WTALITGHVQDKQPIQALELFGKMLLEGHRPNHITIVGVLSACADIG----ALDLGRAIH 274

Query: 225 GICDNGN-NCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVS 283
           G     N   N+   N++++ Y + G +  A ++F+ V ++D  +WT+MI  +   G   
Sbjct: 275 GYGSKSNATTNIIVTNALMDMYAKSGSIASAFSVFEEVQMKDAFTWTTMISSFTVQGNGR 334

Query: 284 NAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAG 343
            A  LF          W  + SG++ N                     + TF  +  A  
Sbjct: 335 KAVELF----------WDMLRSGILPN---------------------SVTFVSVLSACS 363

Query: 344 ATANIDLGRQIHCVLMKTESESDLILEN--CLISMYAKCGVIDNAYNIFSNM-VSRDLVS 400
               I  GR++    M+     D  LE+  C++ +  + G+++ A  +  +M V  D+V 
Sbjct: 364 HAGLIQEGRELF-DKMREVYHIDPRLEHYGCMVDLLGRGGLLEEAEALIDHMDVEPDIVI 422

Query: 401 WNSMVMGFSHHG 412
           W S++     HG
Sbjct: 423 WRSLLSACLAHG 434



 Score = 95.1 bits (235), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 73/276 (26%), Positives = 132/276 (47%), Gaps = 15/276 (5%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWT 77
           +  Y + G  + A+ +F  M  ++ V++ +ML G+++   +  A   F +MP ++ VSWT
Sbjct: 161 VDMYCRCGKFEPARTVFDRMLVKDEVTWGSMLYGYMKCVGVDSALSFFYQMPMKSTVSWT 220

Query: 78  AMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRN----GELNEARKVF----NS 129
           A+I G     +  +A +LF +M        +  +VG++      G L+  R +      S
Sbjct: 221 ALITGHVQDKQPIQALELFGKMLLEGHRPNHITIVGVLSACADIGALDLGRAIHGYGSKS 280

Query: 130 MPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLF 189
               N+I  NA++  Y +   +  A  +FEE++ ++  TWT+MIS +   G   +   LF
Sbjct: 281 NATTNIIVTNALMDMYAKSGSIASAFSVFEEVQMKDAFTWTTMISSFTVQGNGRKAVELF 340

Query: 190 RRMPRK----NVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGY 245
             M R     N V++ +++   +  G  +E   LF +M+ +           C  M++  
Sbjct: 341 WDMLRSGILPNSVTFVSVLSACSHAGLIQEGRELFDKMREVYHIDPRLEHYGC--MVDLL 398

Query: 246 IRFGRLEEAQNLFDTVPVR-DEISWTSMIDGYLSVG 280
            R G LEEA+ L D + V  D + W S++   L+ G
Sbjct: 399 GRGGLLEEAEALIDHMDVEPDIVIWRSLLSACLAHG 434


>gi|242079743|ref|XP_002444640.1| hypothetical protein SORBIDRAFT_07g025280 [Sorghum bicolor]
 gi|241940990|gb|EES14135.1| hypothetical protein SORBIDRAFT_07g025280 [Sorghum bicolor]
          Length = 690

 Score =  279 bits (714), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 171/548 (31%), Positives = 264/548 (48%), Gaps = 70/548 (12%)

Query: 46  NAMLSGFLQNGRLSEARRLFEEMP--ERNVVSWTAMICGLADAGRVCEARKLFEEMPERN 103
           N +L  +  N     A  +F +MP  +R+  +++ +I  LA AG                
Sbjct: 176 NTLLRAYALNSLPHAALAVFVDMPLRQRDTFTYSFLIKALATAG---------------- 219

Query: 104 VVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEE 163
                   V  +R    +    VF    +++    NA+I  Y +   + +A  +F+EM  
Sbjct: 220 --------VTPVRAAHTH----VFKLGSVEDTFVGNALIDAYSKNDGLSDAKKVFDEMTT 267

Query: 164 RNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEM 223
           R+VV+W + ++   R GEV+    +F  MP K+ VSW                       
Sbjct: 268 RDVVSWNTAMAAMVRKGEVDAARSMFDEMPEKDTVSW----------------------- 304

Query: 224 KGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVS 283
                          N+M++GY + G  EEA  LF  +P R+ +SW++++  Y   G + 
Sbjct: 305 ---------------NTMLDGYAKAGEAEEAFELFQRMPGRNVVSWSTVVSAYCKKGDME 349

Query: 284 NAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAG 343
            A  +F  MP ++ V WT M+S   Q  L  EA  LF EM+   +         +  A  
Sbjct: 350 MARVIFDKMPAKNLVTWTIMVSACAQKGLVGEAGRLFTEMKEAAIELDVVAVVSILAACA 409

Query: 344 ATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIF-SNMVSRDLVSWN 402
            +  + LG++IH  + + +     ++ N L+ M+ KCG ++ A  IF + +V +D VSWN
Sbjct: 410 ESGCLALGKRIHRHVRQRKLGRSTLVCNALMDMFCKCGCVNRADYIFDTEIVEKDSVSWN 469

Query: 403 SMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDV 462
            ++ GF+ HG   + L +F  M + G HP++VT + +LSAC+H GLV  G   F  M   
Sbjct: 470 IIIGGFAMHGHGEKALNLFTQMKQQGFHPDAVTLINVLSACTHMGLVEEGRRFFANMETD 529

Query: 463 YKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAE 522
           Y I+P  EHY  M++LLGR G IKEA + +  +P+EP+  IWG+LL AC     N E AE
Sbjct: 530 YGIKPEIEHYGCMVDLLGRGGLIKEAVDMIKSMPWEPNEVIWGSLLSACRL-HKNVEYAE 588

Query: 523 HAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGI 582
            AA  L  L P NA  + VL NIYA +G+  +  K R+ M   G +K  G SW+  +   
Sbjct: 589 LAANELSNLQPSNAGNYAVLSNIYAEAGKWSDMAKARVQMKGTGSQKTAGSSWIELDEAF 648

Query: 583 QMFLSGDK 590
             F  GD+
Sbjct: 649 HEFTVGDR 656



 Score =  165 bits (417), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 111/405 (27%), Positives = 201/405 (49%), Gaps = 19/405 (4%)

Query: 21  YSKRGFIDEAKALFQLMP--QRNVVSYNAMLSGFLQNGRLSEAR----RLFEEMPERNVV 74
           Y+       A A+F  MP  QR+  +Y+ ++      G ++  R     +F+     +  
Sbjct: 182 YALNSLPHAALAVFVDMPLRQRDTFTYSFLIKALATAG-VTPVRAAHTHVFKLGSVEDTF 240

Query: 75  SWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKN 134
              A+I   +    + +A+K+F+EM  R+VVSWN+ +  ++R GE++ AR +F+ MP K+
Sbjct: 241 VGNALIDAYSKNDGLSDAKKVFDEMTTRDVVSWNTAMAAMVRKGEVDAARSMFDEMPEKD 300

Query: 135 VISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPR 194
            +SWN M+ GY +     EA  LF+ M  RNVV+W++++S YC+ G++E    +F +MP 
Sbjct: 301 TVSWNTMLDGYAKAGEAEEAFELFQRMPGRNVVSWSTVVSAYCKKGDMEMARVIFDKMPA 360

Query: 195 KNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEA 254
           KN+V+WT M+   A  G   E+  LF EMK   +     +V +  S++      G L   
Sbjct: 361 KNLVTWTIMVSACAQKGLVGEAGRLFTEMK---EAAIELDVVAVVSILAACAESGCLALG 417

Query: 255 QNLFDTVPV----RDEISWTSMIDGYLSVGQVSNAYYLFHN-MPDRDAVAWTAMISGLVQ 309
           + +   V      R  +   +++D +   G V+ A Y+F   + ++D+V+W  +I G   
Sbjct: 418 KRIHRHVRQRKLGRSTLVCNALMDMFCKCGCVNRADYIFDTEIVEKDSVSWNIIIGGFAM 477

Query: 310 NELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLIL 369
           +    +A  LF +M+  G  P   T   +  A      ++ GR+     M+T+      +
Sbjct: 478 HGHGEKALNLFTQMKQQGFHPDAVTLINVLSACTHMGLVEEGRRFFAN-METDYGIKPEI 536

Query: 370 EN--CLISMYAKCGVIDNAYNIFSNMV-SRDLVSWNSMVMGFSHH 411
           E+  C++ +  + G+I  A ++  +M    + V W S++     H
Sbjct: 537 EHYGCMVDLLGRGGLIKEAVDMIKSMPWEPNEVIWGSLLSACRLH 581



 Score =  155 bits (393), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 96/335 (28%), Positives = 167/335 (49%), Gaps = 49/335 (14%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWT 77
           I  YSK   + +AK +F  M  R+VVS+N  ++  ++ G +  AR +F+EMPE++ VSW 
Sbjct: 246 IDAYSKNDGLSDAKKVFDEMTTRDVVSWNTAMAAMVRKGEVDAARSMFDEMPEKDTVSWN 305

Query: 78  AMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVIS 137
            M+ G A AG   EA +LF+ MP RNVVSW+++V    + G++  AR +F+ MP KN+++
Sbjct: 306 TMLDGYAKAGEAEEAFELFQRMPGRNVVSWSTVVSAYCKKGDMEMARVIFDKMPAKNLVT 365

Query: 138 WNAMIAGYVECCMMGEAIVLFEEMEE---------------------------------- 163
           W  M++   +  ++GEA  LF EM+E                                  
Sbjct: 366 WTIMVSACAQKGLVGEAGRLFTEMKEAAIELDVVAVVSILAACAESGCLALGKRIHRHVR 425

Query: 164 -----RNVVTWTSMISGYCRAGEVEEG-YCLFRRMPRKNVVSWTAMIGGFAWNGFHKESL 217
                R+ +   +++  +C+ G V    Y     +  K+ VSW  +IGGFA +G  +++L
Sbjct: 426 QRKLGRSTLVCNALMDMFCKCGCVNRADYIFDTEIVEKDSVSWNIIIGGFAMHGHGEKAL 485

Query: 218 LLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVP----VRDEIS-WTSM 272
            LF +MK     G + +  +  ++++     G +EE +  F  +     ++ EI  +  M
Sbjct: 486 NLFTQMK---QQGFHPDAVTLINVLSACTHMGLVEEGRRFFANMETDYGIKPEIEHYGCM 542

Query: 273 IDGYLSVGQVSNAYYLFHNMP-DRDAVAWTAMISG 306
           +D     G +  A  +  +MP + + V W +++S 
Sbjct: 543 VDLLGRGGLIKEAVDMIKSMPWEPNEVIWGSLLSA 577



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 76/281 (27%), Positives = 145/281 (51%), Gaps = 16/281 (5%)

Query: 7   PKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFE 66
           P+   V   + +  Y+K G  +EA  LFQ MP RNVVS++ ++S + + G +  AR +F+
Sbjct: 297 PEKDTVSWNTMLDGYAKAGEAEEAFELFQRMPGRNVVSWSTVVSAYCKKGDMEMARVIFD 356

Query: 67  EMPERNVVSWTAMICGLADAGRVCEARKLFEEMPER----NVVSWNSMVVGLIRNGELNE 122
           +MP +N+V+WT M+   A  G V EA +LF EM E     +VV+  S++     +G L  
Sbjct: 357 KMPAKNLVTWTIMVSACAQKGLVGEAGRLFTEMKEAAIELDVVAVVSILAACAESGCLAL 416

Query: 123 ARKVFNSMPI----KNVISWNAMIAGYVECCMMGEAIVLFE-EMEERNVVTWTSMISGYC 177
            +++   +      ++ +  NA++  + +C  +  A  +F+ E+ E++ V+W  +I G+ 
Sbjct: 417 GKRIHRHVRQRKLGRSTLVCNALMDMFCKCGCVNRADYIFDTEIVEKDSVSWNIIIGGFA 476

Query: 178 RAGEVEEGYCLFRRMPRK----NVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNC 233
             G  E+   LF +M ++    + V+   ++      G  +E    F  M+   D G   
Sbjct: 477 MHGHGEKALNLFTQMKQQGFHPDAVTLINVLSACTHMGLVEEGRRFFANME--TDYGIKP 534

Query: 234 NVQSCNSMINGYIRFGRLEEAQNLFDTVPVR-DEISWTSMI 273
            ++    M++   R G ++EA ++  ++P   +E+ W S++
Sbjct: 535 EIEHYGCMVDLLGRGGLIKEAVDMIKSMPWEPNEVIWGSLL 575


>gi|225435444|ref|XP_002282803.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g40720-like [Vitis vinifera]
          Length = 854

 Score =  279 bits (713), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 193/650 (29%), Positives = 316/650 (48%), Gaps = 79/650 (12%)

Query: 13  HLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERN 72
           H+ +++  +  R  +     LF LM  RN+VS+NAM+SG+   G   +A  LF +M    
Sbjct: 191 HVATALIGFYLRFDMRVLPLLFDLMVVRNIVSWNAMISGYYDVGDYFKALELFVQMLVDE 250

Query: 73  V----VSWTAMICGLADAGRVCEARKL------FEEMPERNVVSWNSMVVGLIRNGELNE 122
           V    V+    +   A+ G +   +++      FE + +  ++  N+++     NG L  
Sbjct: 251 VKFDCVTMLVAVQACAELGSLKLGKQIHQLAIKFEFVEDLYIL--NALLNMYSNNGSLES 308

Query: 123 ARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEME-------ERNVVTWTSM--- 172
           + ++F S+P ++   WN+MI+ Y       EA+ LF  M+       ER VV   SM   
Sbjct: 309 SHQLFESVPNRDAPLWNSMISAYAAFGCHEEAMDLFIRMQSEGVKKDERTVVIMLSMCEE 368

Query: 173 ------------------------------ISGYCRAGEVEEGYCLFRRMPRKNVVSWTA 202
                                         +S Y     VE    +F RM   +++SW  
Sbjct: 369 LASGLLKGKSLHAHVIKSGMRIDASLGNALLSMYTELNCVESVQKIFDRMKGVDIISWNT 428

Query: 203 MIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQS----CNSM--------INGYIRFGR 250
           MI   A N    ++  LF  M+      N+  + S    C  +        I+GY+    
Sbjct: 429 MILALARNTLRAQACELFERMRESEIKPNSYTIISILAACEDVTCLDFGRSIHGYVMKHS 488

Query: 251 LEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQN 310
           +E  Q      P+R     T++ D Y++ G  + A  LF   PDRD ++W AMI+  V+N
Sbjct: 489 IEINQ------PLR-----TALADMYMNCGDEATARDLFEGCPDRDLISWNAMIASYVKN 537

Query: 311 ELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESES--DLI 368
               +A  LF  M +   P      +VL  +    A +  G+ +H  + +       DL 
Sbjct: 538 NQAHKALLLFHRMISEAEPNSVTIINVL-SSFTHLATLPQGQSLHAYVTRRGFSLGLDLS 596

Query: 369 LENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESG 428
           L N  I+MYA+CG + +A NIF  +  R+++SWN+M+ G+  +G  ++ +  F  MLE G
Sbjct: 597 LANAFITMYARCGSLQSAENIFKTLPKRNIISWNAMIAGYGMNGRGSDAMLAFSQMLEDG 656

Query: 429 THPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEA 488
             PN VTF+ +LSACSH+G +  G +LF++M   + + P   HY  +++LL R G I EA
Sbjct: 657 FRPNGVTFVSVLSACSHSGFIEMGLQLFHSMVQDFNVTPELVHYSCIVDLLARGGCIDEA 716

Query: 489 EEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAA 548
            EF+  +P EPD  +W ALL +C     +A+ A+   ++L +L+P+NA  +V+L N+YA 
Sbjct: 717 REFIDSMPIEPDASVWRALLSSCR-AYSDAKQAKTIFEKLDKLEPMNAGNYVLLSNVYAT 775

Query: 549 SGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
           +G  +E  ++R  +  KG+RK PG SW++    +  F +GD+   Q  +I
Sbjct: 776 AGLWLEVRRIRTWLKEKGLRKPPGISWIIVKNQVHCFSAGDRSHPQSDKI 825



 Score =  168 bits (425), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 145/571 (25%), Positives = 250/571 (43%), Gaps = 63/571 (11%)

Query: 15  TSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVV 74
           T+ +  Y K GF+++A+ +F  M  R+VV +NAM+ G++  G   EA  L  EM   N+ 
Sbjct: 92  TAVVDFYCKCGFVEDARCVFDAMSDRDVVLWNAMVYGYVGWGCYEEAMLLVREMGRENLR 151

Query: 75  SWTAMICGLADA---------GR----VCEARKLFEEMPE-------------------- 101
             +  +  L  A         GR     C    +F+  P                     
Sbjct: 152 PNSRTMVALLLACEGASELRLGRGVHGYCLRNGMFDSNPHVATALIGFYLRFDMRVLPLL 211

Query: 102 ------RNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNV-ISWNAMIAGYVECCMMG-- 152
                 RN+VSWN+M+ G    G+  +A ++F  M +  V      M+     C  +G  
Sbjct: 212 FDLMVVRNIVSWNAMISGYYDVGDYFKALELFVQMLVDEVKFDCVTMLVAVQACAELGSL 271

Query: 153 -------EAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIG 205
                  +  + FE +E+  ++   ++++ Y   G +E  + LF  +P ++   W +MI 
Sbjct: 272 KLGKQIHQLAIKFEFVEDLYIL--NALLNMYSNNGSLESSHQLFESVPNRDAPLWNSMIS 329

Query: 206 GFAWNGFHKESLLLFIEMK--GICDNGNNCNV--QSCNSMINGYIRFGRLEEAQNLFDTV 261
            +A  G H+E++ LFI M+  G+  +     +    C  + +G ++ G+   A  +   +
Sbjct: 330 AYAAFGCHEEAMDLFIRMQSEGVKKDERTVVIMLSMCEELASGLLK-GKSLHAHVIKSGM 388

Query: 262 PVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFM 321
            + D     +++  Y  +  V +   +F  M   D ++W  MI  L +N L  +A  LF 
Sbjct: 389 RI-DASLGNALLSMYTELNCVESVQKIFDRMKGVDIISWNTMILALARNTLRAQACELFE 447

Query: 322 EMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCG 381
            MR   + P + T   +  A      +D GR IH  +MK   E +  L   L  MY  CG
Sbjct: 448 RMRESEIKPNSYTIISILAACEDVTCLDFGRSIHGYVMKHSIEINQPLRTALADMYMNCG 507

Query: 382 VIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILS 441
               A ++F     RDL+SWN+M+  +  +  A++ L +F  M+ S   PNSVT + +LS
Sbjct: 508 DEATARDLFEGCPDRDLISWNAMIASYVKNNQAHKALLLFHRMI-SEAEPNSVTIINVLS 566

Query: 442 ACSHAGLVSRGWELFNAMFDVYKIQPGPEHYV--SMINLLGRAGKIKEAEEFVLRLPFEP 499
           + +H   + +G  L +A         G +  +  + I +  R G ++ AE     LP + 
Sbjct: 567 SFTHLATLPQGQSL-HAYVTRRGFSLGLDLSLANAFITMYARCGSLQSAENIFKTLP-KR 624

Query: 500 DHRIWGALLGACGFCEGNAEIAEHAAKRLLE 530
           +   W A++   G   G    A  A  ++LE
Sbjct: 625 NIISWNAMIAGYGM-NGRGSDAMLAFSQMLE 654



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 83/285 (29%), Positives = 141/285 (49%), Gaps = 11/285 (3%)

Query: 165 NVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMK 224
           +V   T+++  YC+ G VE+  C+F  M  ++VV W AM+ G+   G ++E++LL  EM 
Sbjct: 87  DVRVGTAVVDFYCKCGFVEDARCVFDAMSDRDVVLWNAMVYGYVGWGCYEEAMLLVREMG 146

Query: 225 GICDNGNNCNVQSCNSMINGY--IRFGRLEEA----QNLFDTVPVRDEISWTSMIDGYLS 278
                 N+  + +      G   +R GR          +FD+ P    ++ T++I  YL 
Sbjct: 147 RENLRPNSRTMVALLLACEGASELRLGRGVHGYCLRNGMFDSNP---HVA-TALIGFYLR 202

Query: 279 VGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVL 338
              +     LF  M  R+ V+W AMISG      + +A  LF++M    V     T  V 
Sbjct: 203 F-DMRVLPLLFDLMVVRNIVSWNAMISGYYDVGDYFKALELFVQMLVDEVKFDCVTMLVA 261

Query: 339 FGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDL 398
             A     ++ LG+QIH + +K E   DL + N L++MY+  G +++++ +F ++ +RD 
Sbjct: 262 VQACAELGSLKLGKQIHQLAIKFEFVEDLYILNALLNMYSNNGSLESSHQLFESVPNRDA 321

Query: 399 VSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSAC 443
             WNSM+  ++  G   E + +F  M   G   +  T + +LS C
Sbjct: 322 PLWNSMISAYAAFGCHEEAMDLFIRMQSEGVKKDERTVVIMLSMC 366



 Score = 82.4 bits (202), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 51/175 (29%), Positives = 84/175 (48%), Gaps = 11/175 (6%)

Query: 295 RDAVAWTAMI---SGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLG 351
           +D   W ++I   + L  ++  + A   + +M + GV P N T  ++  A  A   ++ G
Sbjct: 16  KDPKHWNSVIKHQANLKNDQAILSA---YTQMESLGVLPNNTTLPLVLKACAAQNAVERG 72

Query: 352 RQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHH 411
           + IH  +  T+   D+ +   ++  Y KCG +++A  +F  M  RD+V WN+MV G+   
Sbjct: 73  KSIHRSIQGTDLMDDVRVGTAVVDFYCKCGFVEDARCVFDAMSDRDVVLWNAMVYGYVGW 132

Query: 412 GLANETLKVFESMLESGTHPNSVTFLGILSACSHA-----GLVSRGWELFNAMFD 461
           G   E + +   M      PNS T + +L AC  A     G    G+ L N MFD
Sbjct: 133 GCYEEAMLLVREMGRENLRPNSRTMVALLLACEGASELRLGRGVHGYCLRNGMFD 187


>gi|334185836|ref|NP_001190038.1| tetratricopeptide repeat-like family protein [Arabidopsis thaliana]
 gi|218546754|sp|P0C899.1|PP271_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g49142
 gi|332644983|gb|AEE78504.1| tetratricopeptide repeat-like family protein [Arabidopsis thaliana]
          Length = 686

 Score =  279 bits (713), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 181/582 (31%), Positives = 282/582 (48%), Gaps = 56/582 (9%)

Query: 33  LFQLMPQRNVVSYNAMLSGF--LQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVC 90
           L Q  PQ  V     +L  +  ++  R   +R + E++   N      ++   A    V 
Sbjct: 33  LDQKSPQETVFLLGQVLDTYPDIRTLRTVHSRIILEDL-RCNSSLGVKLMRAYASLKDVA 91

Query: 91  EARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCM 150
            ARK+F+E+PERNV+  N M+   + NG   E  KVF +M   NV   +      ++ C 
Sbjct: 92  SARKVFDEIPERNVIIINVMIRSYVNNGFYGEGVKVFGTMCGCNVRPDHYTFPCVLKACS 151

Query: 151 MGEAIVLFEEME--------ERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTA 202
               IV+  ++            +     ++S Y + G + E   +   M R++VVSW  
Sbjct: 152 CSGTIVIGRKIHGSATKVGLSSTLFVGNGLVSMYGKCGFLSEARLVLDEMSRRDVVSW-- 209

Query: 203 MIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNL---FD 259
                                               NS++ GY +  R ++A  +    +
Sbjct: 210 ------------------------------------NSLVVGYAQNQRFDDALEVCREME 233

Query: 260 TVPVRDEISWTSMIDGYLSVGQVSNAYY---LFHNMPDRDAVAWTAMISGLVQNELFVEA 316
           +V +  +    + +   +S     N  Y   +F  M  +  V+W  MI   ++N + VEA
Sbjct: 234 SVKISHDAGTMASLLPAVSNTTTENVMYVKDMFFKMGKKSLVSWNVMIGVYMKNAMPVEA 293

Query: 317 TYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISM 376
             L+  M A G  P   + + +  A G T+ + LG++IH  + + +   +L+LEN LI M
Sbjct: 294 VELYSRMEADGFEPDAVSITSVLPACGDTSALSLGKKIHGYIERKKLIPNLLLENALIDM 353

Query: 377 YAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTF 436
           YAKCG ++ A ++F NM SRD+VSW +M+  +   G   + + +F  + +SG  P+S+ F
Sbjct: 354 YAKCGCLEKARDVFENMKSRDVVSWTAMISAYGFSGRGCDAVALFSKLQDSGLVPDSIAF 413

Query: 437 LGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLP 496
           +  L+ACSHAGL+  G   F  M D YKI P  EH   M++LLGRAGK+KEA  F+  + 
Sbjct: 414 VTTLAACSHAGLLEEGRSCFKLMTDHYKITPRLEHLACMVDLLGRAGKVKEAYRFIQDMS 473

Query: 497 FEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEH 556
            EP+ R+WGALLGAC     + +I   AA +L +L P  +  +V+L NIYA +GR  E  
Sbjct: 474 MEPNERVWGALLGACRV-HSDTDIGLLAADKLFQLAPEQSGYYVLLSNIYAKAGRWEEVT 532

Query: 557 KLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
            +R  M  KG++K PG S +  N  I  FL GD+   Q  EI
Sbjct: 533 NIRNIMKSKGLKKNPGASNVEVNRIIHTFLVGDRSHPQSDEI 574



 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 111/495 (22%), Positives = 201/495 (40%), Gaps = 76/495 (15%)

Query: 21  YSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNV----VSW 76
           Y+    +  A+ +F  +P+RNV+  N M+  ++ NG   E  ++F  M   NV     ++
Sbjct: 84  YASLKDVASARKVFDEIPERNVIIINVMIRSYVNNGFYGEGVKVFGTMCGCNVRPDHYTF 143

Query: 77  TAMICGLADAGRVCEARKLFEEMPERNVVSW----NSMVVGLIRNGELNEARKVFNSMPI 132
             ++   + +G +   RK+     +  + S     N +V    + G L+EAR V + M  
Sbjct: 144 PCVLKACSCSGTIVIGRKIHGSATKVGLSSTLFVGNGLVSMYGKCGFLSEARLVLDEMSR 203

Query: 133 KNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVV----TWTSMISGYCRAGEVEEGYC- 187
           ++V+SWN+++ GY +     +A+ +  EME   +     T  S++            Y  
Sbjct: 204 RDVVSWNSLVVGYAQNQRFDDALEVCREMESVKISHDAGTMASLLPAVSNTTTENVMYVK 263

Query: 188 -LFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKG------------ICDNGNNCN 234
            +F +M +K++VSW  MIG +  N    E++ L+  M+             +     + +
Sbjct: 264 DMFFKMGKKSLVSWNVMIGVYMKNAMPVEAVELYSRMEADGFEPDAVSITSVLPACGDTS 323

Query: 235 VQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPD 294
             S    I+GYI   +L           + + +   ++ID Y   G +  A  +F NM  
Sbjct: 324 ALSLGKKIHGYIERKKL-----------IPNLLLENALIDMYAKCGCLEKARDVFENMKS 372

Query: 295 RDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQI 354
           RD V+WTAMIS    +    +A  LF +++  G+ P +  F     A      ++ GR  
Sbjct: 373 RDVVSWTAMISAYGFSGRGCDAVALFSKLQDSGLVPDSIAFVTTLAACSHAGLLEEGRSC 432

Query: 355 HCVLMKTESESDLILEN--CLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHG 412
              LM    +    LE+  C++ +  + G +  AY    +M                   
Sbjct: 433 F-KLMTDHYKITPRLEHLACMVDLLGRAGKVKEAYRFIQDM------------------- 472

Query: 413 LANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHY 472
                             PN   +  +L AC        G    + +F +   Q G  +Y
Sbjct: 473 ---------------SMEPNERVWGALLGACRVHSDTDIGLLAADKLFQLAPEQSG--YY 515

Query: 473 VSMINLLGRAGKIKE 487
           V + N+  +AG+ +E
Sbjct: 516 VLLSNIYAKAGRWEE 530



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 74/307 (24%), Positives = 145/307 (47%), Gaps = 23/307 (7%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWT 77
           ++ Y K GF+ EA+ +   M +R+VVS+N+++ G+ QN R  +A  +  EM    +    
Sbjct: 182 VSMYGKCGFLSEARLVLDEMSRRDVVSWNSLVVGYAQNQRFDDALEVCREMESVKISHDA 241

Query: 78  AMICGLADA------GRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMP 131
             +  L  A        V   + +F +M ++++VSWN M+   ++N    EA ++++ M 
Sbjct: 242 GTMASLLPAVSNTTTENVMYVKDMFFKMGKKSLVSWNVMIGVYMKNAMPVEAVELYSRME 301

Query: 132 IKNVISWNAMIAGYVECCMMGEAIVLFEEME---ER-----NVVTWTSMISGYCRAGEVE 183
                     I   +  C    A+ L +++    ER     N++   ++I  Y + G +E
Sbjct: 302 ADGFEPDAVSITSVLPACGDTSALSLGKKIHGYIERKKLIPNLLLENALIDMYAKCGCLE 361

Query: 184 EGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMIN 243
           +   +F  M  ++VVSWTAMI  + ++G   +++ LF +++   D+G   +  +  + + 
Sbjct: 362 KARDVFENMKSRDVVSWTAMISAYGFSGRGCDAVALFSKLQ---DSGLVPDSIAFVTTLA 418

Query: 244 GYIRFGRLEEAQNLFDTVPVRDEIS-----WTSMIDGYLSVGQVSNAYYLFHNMP-DRDA 297
                G LEE ++ F  +    +I+        M+D     G+V  AY    +M  + + 
Sbjct: 419 ACSHAGLLEEGRSCFKLMTDHYKITPRLEHLACMVDLLGRAGKVKEAYRFIQDMSMEPNE 478

Query: 298 VAWTAMI 304
             W A++
Sbjct: 479 RVWGALL 485


>gi|225466163|ref|XP_002263755.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 624

 Score =  279 bits (713), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 158/487 (32%), Positives = 258/487 (52%), Gaps = 39/487 (8%)

Query: 116 RNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNV----VTWTS 171
           ++G+LN A +VF+ +P  +   +N +  GY+   +    I ++  M  ++V     T+  
Sbjct: 66  KSGDLNYALEVFDKIPHPDAYIYNTIFRGYLRWQLARNCIFMYSRMLHKSVSPNKFTYPP 125

Query: 172 MISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGN 231
           +I   C    +EEG     +    +V+ +     GF  +GF                   
Sbjct: 126 LIRACCIDYAIEEG-----KQIHAHVLKF-----GFGADGF------------------- 156

Query: 232 NCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHN 291
                S N++I+ Y+ F  LE+A+ +FD +P RD +SWTS+I GY   G V  A  +F  
Sbjct: 157 -----SLNNLIHMYVNFQSLEQARRVFDNMPQRDVVSWTSLITGYSQWGFVDKAREVFEL 211

Query: 292 MPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLG 351
           MP+R++V+W AMI+  VQ+    EA  LF  MR   V       + +  A      ++ G
Sbjct: 212 MPERNSVSWNAMIAAYVQSNRLHEAFALFDRMRLENVVLDKFVAASMLSACTGLGALEQG 271

Query: 352 RQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHH 411
           + IH  + K+  E D  L   +I MY KCG ++ A  +F+ +  + + SWN M+ G + H
Sbjct: 272 KWIHGYIEKSGIELDSKLATTVIDMYCKCGCLEKASEVFNELPQKGISSWNCMIGGLAMH 331

Query: 412 GLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEH 471
           G     +++F+ M      P+ +TF+ +LSAC+H+GLV  G   F  M +V  ++PG EH
Sbjct: 332 GKGEAAIELFKEMEREMVAPDGITFVNVLSACAHSGLVEEGKHYFQYMTEVLGLKPGMEH 391

Query: 472 YVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLEL 531
           +  M++LLGRAG ++EA + +  +P  PD  + GAL+GAC    GN E+ E   K+++EL
Sbjct: 392 FGCMVDLLGRAGLLEEARKLINEMPVNPDAGVLGALVGACRI-HGNTELGEQIGKKVIEL 450

Query: 532 DPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKI 591
           +P N+  +V+L N+YA++GR  +  K+R  M  +GV+K PG S +    G+  F++G + 
Sbjct: 451 EPHNSGRYVLLANLYASAGRWEDVAKVRKLMNDRGVKKAPGFSMIESESGVDEFIAGGRA 510

Query: 592 PAQVAEI 598
             Q  EI
Sbjct: 511 HPQAKEI 517



 Score =  122 bits (305), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 67/189 (35%), Positives = 112/189 (59%), Gaps = 8/189 (4%)

Query: 44  SYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERN 103
           S N ++  ++    L +ARR+F+ MP+R+VVSWT++I G +  G V +AR++FE MPERN
Sbjct: 157 SLNNLIHMYVNFQSLEQARRVFDNMPQRDVVSWTSLITGYSQWGFVDKAREVFELMPERN 216

Query: 104 VVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCM------MGEAIVL 157
            VSWN+M+   +++  L+EA  +F+ M ++NV+    + A  +  C        G+ I  
Sbjct: 217 SVSWNAMIAAYVQSNRLHEAFALFDRMRLENVVLDKFVAASMLSACTGLGALEQGKWIHG 276

Query: 158 FEEME--ERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKE 215
           + E    E +    T++I  YC+ G +E+   +F  +P+K + SW  MIGG A +G  + 
Sbjct: 277 YIEKSGIELDSKLATTVIDMYCKCGCLEKASEVFNELPQKGISSWNCMIGGLAMHGKGEA 336

Query: 216 SLLLFIEMK 224
           ++ LF EM+
Sbjct: 337 AIELFKEME 345



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 73/201 (36%), Positives = 110/201 (54%), Gaps = 14/201 (6%)

Query: 5   NHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRL 64
           N P+  VV  TS IT YS+ GF+D+A+ +F+LMP+RN VS+NAM++ ++Q+ RL EA  L
Sbjct: 180 NMPQRDVVSWTSLITGYSQWGFVDKAREVFELMPERNSVSWNAMIAAYVQSNRLHEAFAL 239

Query: 65  FEEMPERNVV----SWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLI----- 115
           F+ M   NVV       +M+      G + E  K      E++ +  +S +   +     
Sbjct: 240 FDRMRLENVVLDKFVAASMLSACTGLGAL-EQGKWIHGYIEKSGIELDSKLATTVIDMYC 298

Query: 116 RNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNV----VTWTS 171
           + G L +A +VFN +P K + SWN MI G         AI LF+EME   V    +T+ +
Sbjct: 299 KCGCLEKASEVFNELPQKGISSWNCMIGGLAMHGKGEAAIELFKEMEREMVAPDGITFVN 358

Query: 172 MISGYCRAGEVEEGYCLFRRM 192
           ++S    +G VEEG   F+ M
Sbjct: 359 VLSACAHSGLVEEGKHYFQYM 379



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 78/263 (29%), Positives = 133/263 (50%), Gaps = 16/263 (6%)

Query: 14  LTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNV 73
           L + I  Y     +++A+ +F  MPQR+VVS+ ++++G+ Q G + +AR +FE MPERN 
Sbjct: 158 LNNLIHMYVNFQSLEQARRVFDNMPQRDVVSWTSLITGYSQWGFVDKAREVFELMPERNS 217

Query: 74  VSWTAMICGLADAGRVCEARKLFEEMPERNVV----SWNSMVVGLIRNGELNEARKVFNS 129
           VSW AMI     + R+ EA  LF+ M   NVV       SM+      G L + + +   
Sbjct: 218 VSWNAMIAAYVQSNRLHEAFALFDRMRLENVVLDKFVAASMLSACTGLGALEQGKWIHGY 277

Query: 130 MPIKNVISWNAMIAG-----YVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEE 184
           +  K+ I  ++ +A      Y +C  + +A  +F E+ ++ + +W  MI G    G+ E 
Sbjct: 278 IE-KSGIELDSKLATTVIDMYCKCGCLEKASEVFNELPQKGISSWNCMIGGLAMHGKGEA 336

Query: 185 GYCLFRRMPRKNV----VSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNS 240
              LF+ M R+ V    +++  ++   A +G  +E    F  M  +   G    ++    
Sbjct: 337 AIELFKEMEREMVAPDGITFVNVLSACAHSGLVEEGKHYFQYMTEVL--GLKPGMEHFGC 394

Query: 241 MINGYIRFGRLEEAQNLFDTVPV 263
           M++   R G LEEA+ L + +PV
Sbjct: 395 MVDLLGRAGLLEEARKLINEMPV 417


>gi|357127483|ref|XP_003565409.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930-like [Brachypodium distachyon]
          Length = 552

 Score =  279 bits (713), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 159/433 (36%), Positives = 237/433 (54%), Gaps = 2/433 (0%)

Query: 167 VTWTSMISGYCRAGEVEEGYCLFRRMPRKNVV-SWTAMIGGFAWNGFHKESLLLFIEMKG 225
           V W ++ISG+ R+ +     C F  M R  VV +    I   +  G  K   L     K 
Sbjct: 89  VVWNALISGHRRSRQFRLSCCSFVDMVRTGVVPTPVTYITVLSACGKDKYIWLGMQVHKC 148

Query: 226 ICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNA 285
           +  +G   +++  N++I+ Y     ++ A  LF+ + VR+ +SWTS+I G+L +GQV  A
Sbjct: 149 VVASGVLPDLKVGNALIDMYAECSEMDAAWELFEGMEVRNTVSWTSVISGFLRLGQVDQA 208

Query: 286 YYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGAT 345
             LF  MP+RD V+WTAMI G VQ   F EA  +F EM+   V     T   +  A    
Sbjct: 209 RTLFDCMPERDTVSWTAMIDGYVQAGQFREALEMFREMQFSKVRADEFTMVSVVTACAQL 268

Query: 346 ANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMV 405
             ++ G      + +   + D  + N L+ MY+KCG I  A  +F  M  RD  +W +++
Sbjct: 269 GALETGEWARIYMSRHGIKMDTFVGNALVDMYSKCGSIQQALGVFKEMYIRDKFTWTAVI 328

Query: 406 MGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKI 465
           +G + +G   E + +F  ML     P+ VTF+G+L+AC+HAGLV +G + F +M   Y I
Sbjct: 329 LGLAVNGHGEEAINMFYRMLRVFEAPDEVTFIGVLTACTHAGLVDKGRDFFLSMTGSYGI 388

Query: 466 QPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAA 525
            P   H+  +I+LLGRAGK+KEA E +  +P  P+  IWG LL AC    GN+EI + AA
Sbjct: 389 APNVMHFGCLIDLLGRAGKLKEALETIGNMPMRPNSAIWGTLLAACR-VHGNSEIGQLAA 447

Query: 526 KRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMF 585
           + LLELD  N   +++L N+YA S R  +  +LR  +  KG++K PGCS +  NG I  F
Sbjct: 448 EHLLELDTENGMVYILLSNLYAKSNRWEDVRRLRQVIMEKGIKKEPGCSLIEMNGTIHEF 507

Query: 586 LSGDKIPAQVAEI 598
           ++GD+      EI
Sbjct: 508 IAGDRSHPMSKEI 520



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 115/443 (25%), Positives = 191/443 (43%), Gaps = 22/443 (4%)

Query: 14  LTSSITKYSKRGFIDEA--KALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPER 71
           L  ++T  ++RG + +A    + +   + N    ++++  +   G  + AR L +  P R
Sbjct: 24  LLKAVTAAAERGAVGDAVHAHVVKFGMELNAHVASSLVLMYAARGDGAVARTLLDAWPAR 83

Query: 72  ---NVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEA----- 123
                V W A+I G   + +   +   F +M    VV      + ++     ++      
Sbjct: 84  GGDTPVVWNALISGHRRSRQFRLSCCSFVDMVRTGVVPTPVTYITVLSACGKDKYIWLGM 143

Query: 124 ---RKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAG 180
              + V  S  + ++   NA+I  Y EC  M  A  LFE ME RN V+WTS+ISG+ R G
Sbjct: 144 QVHKCVVASGVLPDLKVGNALIDMYAECSEMDAAWELFEGMEVRNTVSWTSVISGFLRLG 203

Query: 181 EVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNS 240
           +V++   LF  MP ++ VSWTAMI G+   G  +E+L +F EM+    +    +  +  S
Sbjct: 204 QVDQARTLFDCMPERDTVSWTAMIDGYVQAGQFREALEMFREMQF---SKVRADEFTMVS 260

Query: 241 MINGYIRFGRLEE---AQNLFDTVPVR-DEISWTSMIDGYLSVGQVSNAYYLFHNMPDRD 296
           ++    + G LE    A+       ++ D     +++D Y   G +  A  +F  M  RD
Sbjct: 261 VVTACAQLGALETGEWARIYMSRHGIKMDTFVGNALVDMYSKCGSIQQALGVFKEMYIRD 320

Query: 297 AVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHC 356
              WTA+I GL  N    EA  +F  M      P   TF  +  A      +D GR    
Sbjct: 321 KFTWTAVILGLAVNGHGEEAINMFYRMLRVFEAPDEVTFIGVLTACTHAGLVDKGRDFFL 380

Query: 357 VLMKTESESDLILE-NCLISMYAKCGVIDNAYNIFSNMVSR-DLVSWNSMVMGFSHHGLA 414
            +  +   +  ++   CLI +  + G +  A     NM  R +   W +++     HG +
Sbjct: 381 SMTGSYGIAPNVMHFGCLIDLLGRAGKLKEALETIGNMPMRPNSAIWGTLLAACRVHGNS 440

Query: 415 NETLKVFESMLESGTHPNSVTFL 437
                  E +LE  T    V  L
Sbjct: 441 EIGQLAAEHLLELDTENGMVYIL 463



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 77/289 (26%), Positives = 133/289 (46%), Gaps = 37/289 (12%)

Query: 11  VVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPE 70
            V  TS I+ + + G +D+A+ LF  MP+R+ VS+ AM+ G++Q G+  EA  +F EM  
Sbjct: 189 TVSWTSVISGFLRLGQVDQARTLFDCMPERDTVSWTAMIDGYVQAGQFREALEMFREMQF 248

Query: 71  RNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSM 130
             V +                     +E    +VV+  +  +G +  GE   AR   +  
Sbjct: 249 SKVRA---------------------DEFTMVSVVTACAQ-LGALETGEW--ARIYMSRH 284

Query: 131 PIK-NVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLF 189
            IK +    NA++  Y +C  + +A+ +F+EM  R+  TWT++I G    G  EE   +F
Sbjct: 285 GIKMDTFVGNALVDMYSKCGSIQQALGVFKEMYIRDKFTWTAVILGLAVNGHGEEAINMF 344

Query: 190 RRMPR----KNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGY 245
            RM R     + V++  ++      G   +    F+ M G    G   NV     +I+  
Sbjct: 345 YRMLRVFEAPDEVTFIGVLTACTHAGLVDKGRDFFLSMTG--SYGIAPNVMHFGCLIDLL 402

Query: 246 IRFGRLEEAQNLFDTVPVR-DEISWTSM-----IDGYLSVGQVSNAYYL 288
            R G+L+EA      +P+R +   W ++     + G   +GQ++  + L
Sbjct: 403 GRAGKLKEALETIGNMPMRPNSAIWGTLLAACRVHGNSEIGQLAAEHLL 451


>gi|357507205|ref|XP_003623891.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498906|gb|AES80109.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1288

 Score =  279 bits (713), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 182/585 (31%), Positives = 291/585 (49%), Gaps = 28/585 (4%)

Query: 2    SERNHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEA 61
            SE   P+  +  L+ S +   K           +L+P   +  +N + S  L    + +A
Sbjct: 701  SELRTPRRFIFSLSCSFSNMIK-----------ELLPTDPISIFNLLKSYALSPTNILKA 749

Query: 62   RRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPER----NVVSWNSMVVGLIRN 117
              LF ++P   +  W  MI G +   +  EA + +  M  +    N +++  ++    R 
Sbjct: 750  NELFRQIPRPTLSHWNIMIRGWSQTNQPIEAIRNYNLMYSQALFGNNLTYPFLLKACARI 809

Query: 118  GELN----EARKV---FNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWT 170
              ++     AR +   F+S    ++   NA+I GY   C +G A  +F+EM ER++V+W 
Sbjct: 810  SNVSCTTVHARVLKLGFDS----DLFVSNALIHGYAGFCELGFARKVFDEMSERDLVSWN 865

Query: 171  SMISGYCRAGEVEEGYCLFRRMPRKNVV-SWTAMIGGFAWNGFHKESLLLFIEMKGICDN 229
            S+I GY R     E   +F  M   +V      M+          E  ++   ++ I +N
Sbjct: 866  SLICGYGRCRRYSEVLVVFEEMRMADVKGDAVTMVKVVLACTVLGEWGVVDAMIEYIEEN 925

Query: 230  GNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLF 289
                +V   N++I+ Y R   ++ A+ +FD +  R+ +SW +MI GY   G +  A  LF
Sbjct: 926  KVEVDVYLGNTLIDMYGRRSMVDLARRVFDRMRDRNMVSWNAMIMGYGKAGNLVAARKLF 985

Query: 290  HNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANID 349
             +MP RD ++WT+MIS   Q   F +A  LF EM    V P   T + +  A      +D
Sbjct: 986  DDMPHRDVISWTSMISSYSQAGQFGKAVRLFQEMMVTKVKPDEITVASVLSACAHIGALD 1045

Query: 350  LGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFS 409
            +G  +H  + K +  +D+ + N LI MY KCG ++   ++F  M  RD VSW S++ G +
Sbjct: 1046 VGEAVHEYIRKYDVNADIYVGNALIDMYCKCGAVEKGLSVFEEMGKRDSVSWTSVIAGLA 1105

Query: 410  HHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGP 469
             +G A+  L +F  ML  G  P   TF+G+L AC+HAG+V +G E F +M  VY + P  
Sbjct: 1106 VNGSADSALNLFSLMLREGVRPTHGTFVGVLLACAHAGVVDKGLEYFESMERVYGLTPEM 1165

Query: 470  EHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLL 529
            +HY  +++LL R+G +  A EF+ R+P +PD  +W  LL A     GN  +AE A K+LL
Sbjct: 1166 KHYGCVVDLLSRSGNLGRAYEFIKRMPMDPDVVVWRILLSASQ-VHGNLHLAEIATKKLL 1224

Query: 530  ELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCS 574
            E DP N+  +++  N YA S R  +  K+R  M    V K    S
Sbjct: 1225 ETDPSNSGNYILSSNTYAGSNRWEDVIKMRRLMEESNVHKPSASS 1269


>gi|225447423|ref|XP_002276196.1| PREDICTED: pentatricopeptide repeat-containing protein At3g12770
           [Vitis vinifera]
 gi|296081235|emb|CBI17979.3| unnamed protein product [Vitis vinifera]
          Length = 742

 Score =  279 bits (713), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 172/532 (32%), Positives = 268/532 (50%), Gaps = 62/532 (11%)

Query: 118 GELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEME--------------- 162
           GE+  ARKVF+  P  +V  WNA+I GY      G+AI ++  M+               
Sbjct: 117 GEIGYARKVFDEFPEPSVFLWNAIIRGYSSHNFFGDAIEMYSRMQASGVNPDGFTLPCVL 176

Query: 163 ------------------------ERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVV 198
                                   E +V     +++ Y + G VE+   +F  +  +N+V
Sbjct: 177 KACSGVPVLEVGKRVHGQIFRLGFESDVFVQNGLVALYAKCGRVEQARIVFEGLDDRNIV 236

Query: 199 SWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQ----SCNSMINGYIRFGRLEEA 254
           SWT+MI G+  NG   E+L +F +M+         NV+    +  S++  Y     LE+ 
Sbjct: 237 SWTSMISGYGQNGLPMEALRIFGQMR-------QRNVKPDWIALVSVLRAYTDVEDLEQG 289

Query: 255 QNLFDTVPVRDE-------ISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGL 307
           +++   V            IS T+M   Y   GQV  A   F  M   + + W AMISG 
Sbjct: 290 KSIHGCVVKMGLEFEPDLLISLTAM---YAKCGQVMVARSFFDQMEIPNVMMWNAMISGY 346

Query: 308 VQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDL 367
            +N    EA  LF EM +  +   + T      A     ++DL + +   + KTE  +D+
Sbjct: 347 AKNGYTNEAVGLFQEMISKNIRTDSITVRSAILACAQVGSLDLAKWMGDYINKTEYRNDV 406

Query: 368 ILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLES 427
            +   LI M+AKCG +D A  +F   + +D+V W++M++G+  HG   + + +F +M ++
Sbjct: 407 FVNTALIDMFAKCGSVDLAREVFDRTLDKDVVVWSAMIVGYGLHGRGQDAIDLFYAMKQA 466

Query: 428 GTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKE 487
           G  PN VTF+G+L+AC+H+GLV  GWELF++M   Y I+   +HY  +++LLGR+G + E
Sbjct: 467 GVCPNDVTFVGLLTACNHSGLVEEGWELFHSM-KYYGIEARHQHYACVVDLLGRSGHLNE 525

Query: 488 AEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYA 547
           A +F+  +P EP   +WGALLGAC     +  + E+AA++L  LDP N   +V L N+YA
Sbjct: 526 AYDFITTMPIEPGVSVWGALLGACKIYR-HVTLGEYAAEQLFSLDPFNTGHYVQLSNLYA 584

Query: 548 ASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEIL 599
           +S       K+R+ M  KG+ K  G S +  NG +Q F  GDK   +  EI 
Sbjct: 585 SSRLWDSVAKVRILMREKGLSKDLGYSLIEINGKLQAFRVGDKSHPRFKEIF 636



 Score =  115 bits (287), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 57/239 (23%), Positives = 123/239 (51%), Gaps = 2/239 (0%)

Query: 270 TSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVP 329
           T  ++   ++G++  A  +F   P+     W A+I G   +  F +A  ++  M+A GV 
Sbjct: 107 TKFVNASWNIGEIGYARKVFDEFPEPSVFLWNAIIRGYSSHNFFGDAIEMYSRMQASGVN 166

Query: 330 PLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNI 389
           P   T   +  A      +++G+++H  + +   ESD+ ++N L+++YAKCG ++ A  +
Sbjct: 167 PDGFTLPCVLKACSGVPVLEVGKRVHGQIFRLGFESDVFVQNGLVALYAKCGRVEQARIV 226

Query: 390 FSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLV 449
           F  +  R++VSW SM+ G+  +GL  E L++F  M +    P+ +  + +L A +    +
Sbjct: 227 FEGLDDRNIVSWTSMISGYGQNGLPMEALRIFGQMRQRNVKPDWIALVSVLRAYTDVEDL 286

Query: 450 SRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALL 508
            +G  +   +  +  ++  P+  +S+  +  + G++  A  F  ++   P+  +W A++
Sbjct: 287 EQGKSIHGCVVKM-GLEFEPDLLISLTAMYAKCGQVMVARSFFDQMEI-PNVMMWNAMI 343



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 101/420 (24%), Positives = 176/420 (41%), Gaps = 85/420 (20%)

Query: 56  GRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMP--------------- 100
           G +  AR++F+E PE +V  W A+I G +      +A +++  M                
Sbjct: 117 GEIGYARKVFDEFPEPSVFLWNAIIRGYSSHNFFGDAIEMYSRMQASGVNPDGFTLPCVL 176

Query: 101 ------------------------ERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVI 136
                                   E +V   N +V    + G + +AR VF  +  +N++
Sbjct: 177 KACSGVPVLEVGKRVHGQIFRLGFESDVFVQNGLVALYAKCGRVEQARIVFEGLDDRNIV 236

Query: 137 SWNAMIAGYVECCMMGEAIVLFEEMEERNVV-TWTSMIS--------------------- 174
           SW +MI+GY +  +  EA+ +F +M +RNV   W +++S                     
Sbjct: 237 SWTSMISGYGQNGLPMEALRIFGQMRQRNVKPDWIALVSVLRAYTDVEDLEQGKSIHGCV 296

Query: 175 -----------------GYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESL 217
                             Y + G+V      F +M   NV+ W AMI G+A NG+  E++
Sbjct: 297 VKMGLEFEPDLLISLTAMYAKCGQVMVARSFFDQMEIPNVMMWNAMISGYAKNGYTNEAV 356

Query: 218 LLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTV---PVRDEISW-TSMI 273
            LF EM  I  N    ++ +  S I    + G L+ A+ + D +     R+++   T++I
Sbjct: 357 GLFQEM--ISKNIRTDSI-TVRSAILACAQVGSLDLAKWMGDYINKTEYRNDVFVNTALI 413

Query: 274 DGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNA 333
           D +   G V  A  +F    D+D V W+AMI G   +    +A  LF  M+  GV P + 
Sbjct: 414 DMFAKCGSVDLAREVFDRTLDKDVVVWSAMIVGYGLHGRGQDAIDLFYAMKQAGVCPNDV 473

Query: 334 TFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNM 393
           TF  L  A   +  ++ G ++   +     E+      C++ +  + G ++ AY+  + M
Sbjct: 474 TFVGLLTACNHSGLVEEGWELFHSMKYYGIEARHQHYACVVDLLGRSGHLNEAYDFITTM 533



 Score =  112 bits (279), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 95/347 (27%), Positives = 158/347 (45%), Gaps = 71/347 (20%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVV-SW 76
           +  Y+K G +++A+ +F+ +  RN+VS+ +M+SG+ QNG   EA R+F +M +RNV   W
Sbjct: 211 VALYAKCGRVEQARIVFEGLDDRNIVSWTSMISGYGQNGLPMEALRIFGQMRQRNVKPDW 270

Query: 77  TAMICGL--------------------------------------ADAGRVCEARKLFEE 98
            A++  L                                      A  G+V  AR  F++
Sbjct: 271 IALVSVLRAYTDVEDLEQGKSIHGCVVKMGLEFEPDLLISLTAMYAKCGQVMVARSFFDQ 330

Query: 99  MPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCM-------- 150
           M   NV+ WN+M+ G  +NG  NEA  +F  M  KN+ + +  +   +  C         
Sbjct: 331 MEIPNVMMWNAMISGYAKNGYTNEAVGLFQEMISKNIRTDSITVRSAILACAQVGSLDLA 390

Query: 151 --MGEAIVLFEEMEERN-VVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGF 207
             MG+ I    + E RN V   T++I  + + G V+    +F R   K+VV W+AMI G+
Sbjct: 391 KWMGDYI---NKTEYRNDVFVNTALIDMFAKCGSVDLAREVFDRTLDKDVVVWSAMIVGY 447

Query: 208 AWNGFHKESLLLFIEMK--GICDNGNNCN--VQSCNSMINGYIRFGRLEEAQNLFDT--- 260
             +G  ++++ LF  MK  G+C N       + +CN         G +EE   LF +   
Sbjct: 448 GLHGRGQDAIDLFYAMKQAGVCPNDVTFVGLLTACNHS-------GLVEEGWELFHSMKY 500

Query: 261 --VPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVA-WTAMI 304
             +  R +  +  ++D     G ++ AY     MP    V+ W A++
Sbjct: 501 YGIEARHQ-HYACVVDLLGRSGHLNEAYDFITTMPIEPGVSVWGALL 546



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 91/381 (23%), Positives = 168/381 (44%), Gaps = 75/381 (19%)

Query: 170 TSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMK--GIC 227
           T  ++     GE+     +F   P  +V  W A+I G++ + F  +++ ++  M+  G+ 
Sbjct: 107 TKFVNASWNIGEIGYARKVFDEFPEPSVFLWNAIIRGYSSHNFFGDAIEMYSRMQASGVN 166

Query: 228 DNGNN--CNVQSC----------------------------NSMINGYIRFGRLEEAQNL 257
            +G    C +++C                            N ++  Y + GR+E+A+ +
Sbjct: 167 PDGFTLPCVLKACSGVPVLEVGKRVHGQIFRLGFESDVFVQNGLVALYAKCGRVEQARIV 226

Query: 258 FDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEAT 317
           F+ +  R+ +SWTSMI GY                                QN L +EA 
Sbjct: 227 FEGLDDRNIVSWTSMISGY-------------------------------GQNGLPMEAL 255

Query: 318 YLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIH-CVL-MKTESESDLILENCLIS 375
            +F +MR   V P       +  A     +++ G+ IH CV+ M  E E DL++   L +
Sbjct: 256 RIFGQMRQRNVKPDWIALVSVLRAYTDVEDLEQGKSIHGCVVKMGLEFEPDLLIS--LTA 313

Query: 376 MYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVT 435
           MYAKCG +  A + F  M   +++ WN+M+ G++ +G  NE + +F+ M+      +S+T
Sbjct: 314 MYAKCGQVMVARSFFDQMEIPNVMMWNAMISGYAKNGYTNEAVGLFQEMISKNIRTDSIT 373

Query: 436 FLGILSACSHAGLVSRGWELFNAMFD-VYKIQPGPEHYV--SMINLLGRAGKIKEAEEFV 492
               + AC+  G +    +L   M D + K +   + +V  ++I++  + G +  A E V
Sbjct: 374 VRSAILACAQVGSL----DLAKWMGDYINKTEYRNDVFVNTALIDMFAKCGSVDLARE-V 428

Query: 493 LRLPFEPDHRIWGALLGACGF 513
                + D  +W A++   G 
Sbjct: 429 FDRTLDKDVVVWSAMIVGYGL 449



 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 61/191 (31%), Positives = 101/191 (52%), Gaps = 12/191 (6%)

Query: 14  LTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNV 73
           L S    Y+K G +  A++ F  M   NV+ +NAM+SG+ +NG  +EA  LF+EM  +N+
Sbjct: 308 LISLTAMYAKCGQVMVARSFFDQMEIPNVMMWNAMISGYAKNGYTNEAVGLFQEMISKNI 367

Query: 74  ----VSWTAMICGLADAGRVCEAR---KLFEEMPERNVVSWNSMVVGLI-RNGELNEARK 125
               ++  + I   A  G +  A+       +   RN V  N+ ++ +  + G ++ AR+
Sbjct: 368 RTDSITVRSAILACAQVGSLDLAKWMGDYINKTEYRNDVFVNTALIDMFAKCGSVDLARE 427

Query: 126 VFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNV----VTWTSMISGYCRAGE 181
           VF+    K+V+ W+AMI GY       +AI LF  M++  V    VT+  +++    +G 
Sbjct: 428 VFDRTLDKDVVVWSAMIVGYGLHGRGQDAIDLFYAMKQAGVCPNDVTFVGLLTACNHSGL 487

Query: 182 VEEGYCLFRRM 192
           VEEG+ LF  M
Sbjct: 488 VEEGWELFHSM 498



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 53/206 (25%), Positives = 97/206 (47%), Gaps = 17/206 (8%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNV----VSYNAMLSGFLQNGRLSEARRLFEEMPE--- 70
           I+ Y+K G+ +EA  LFQ M  +N+    ++  + +    Q G L  A+ + + + +   
Sbjct: 343 ISGYAKNGYTNEAVGLFQEMISKNIRTDSITVRSAILACAQVGSLDLAKWMGDYINKTEY 402

Query: 71  -RNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNS 129
             +V   TA+I   A  G V  AR++F+   +++VV W++M+VG   +G   +A  +F +
Sbjct: 403 RNDVFVNTALIDMFAKCGSVDLAREVFDRTLDKDVVVWSAMIVGYGLHGRGQDAIDLFYA 462

Query: 130 MPIKNVISWNAMIAGYVECC----MMGEAIVLFEEMEERNVVT----WTSMISGYCRAGE 181
           M    V   +    G +  C    ++ E   LF  M+   +      +  ++    R+G 
Sbjct: 463 MKQAGVCPNDVTFVGLLTACNHSGLVEEGWELFHSMKYYGIEARHQHYACVVDLLGRSGH 522

Query: 182 VEEGYCLFRRMPRKNVVS-WTAMIGG 206
           + E Y     MP +  VS W A++G 
Sbjct: 523 LNEAYDFITTMPIEPGVSVWGALLGA 548



 Score = 47.0 bits (110), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 39/170 (22%), Positives = 74/170 (43%), Gaps = 22/170 (12%)

Query: 353 QIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHG 412
           QIH  L+ +       L    ++     G I  A  +F       +  WN+++ G+S H 
Sbjct: 89  QIHAQLVVSGLVESGFLVTKFVNASWNIGEIGYARKVFDEFPEPSVFLWNAIIRGYSSHN 148

Query: 413 LANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMF------DVYKIQ 466
              + ++++  M  SG +P+  T   +L ACS   ++  G  +   +F      DV+ +Q
Sbjct: 149 FFGDAIEMYSRMQASGVNPDGFTLPCVLKACSGVPVLEVGKRVHGQIFRLGFESDVF-VQ 207

Query: 467 PGPEHYVSMINLLGRAGKIKEAEEFVLRLPFE--PDHRI--WGALLGACG 512
            G      ++ L  + G++++A     R+ FE   D  I  W +++   G
Sbjct: 208 NG------LVALYAKCGRVEQA-----RIVFEGLDDRNIVSWTSMISGYG 246


>gi|225439325|ref|XP_002267596.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g06540-like [Vitis vinifera]
          Length = 623

 Score =  279 bits (713), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 149/443 (33%), Positives = 248/443 (55%), Gaps = 2/443 (0%)

Query: 157 LFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKES 216
           +F +++  N+  + +MI G+  +   ++ +  + +  R+ ++           +      
Sbjct: 75  IFSQIQNPNLFIFNAMIRGHSGSKNPDQAFHFYVQSQRQGLLPDNLTFPFLVKSCTKLHC 134

Query: 217 LLLFIEMKG-ICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDG 275
           + +  +  G I  +G   +V   NS+++ Y  FG  E A  +F  +   D +SWTSMI G
Sbjct: 135 ISMGSQAHGHIIKHGFEKDVYVQNSLVHMYATFGDTEAATLIFQRMYYVDVVSWTSMIRG 194

Query: 276 YLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATF 335
           +   G V +A  LF  MP+++ V W+ MISG  QN  F +A  LF  +++ GV       
Sbjct: 195 FNKCGDVESARKLFDQMPEKNLVTWSTMISGYAQNNHFDKAVELFKVLQSQGVRANETVM 254

Query: 336 SVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVS 395
             +  +      ++LG + H  ++K     +LIL   L+ MYA+CG ID A  +F ++  
Sbjct: 255 VSVISSCAHLGALELGERAHDYVVKNGMTLNLILGTALVDMYARCGSIDKAVWVFEDLPE 314

Query: 396 RDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWEL 455
           RD +SW +++ G + HG +  +LK F +M+E+G  P  +TF  +LSACSH GLV RG+++
Sbjct: 315 RDTLSWTALIAGLAMHGYSERSLKYFATMVEAGLTPRDITFTAVLSACSHGGLVERGFQI 374

Query: 456 FNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCE 515
           F +M   ++++P  EHY  M++LLGRAGK++EAE FVL++P +P+  +WGALLGAC    
Sbjct: 375 FESMKRDHRVEPRLEHYGCMVDLLGRAGKLEEAERFVLKMPVKPNAPVWGALLGACRI-H 433

Query: 516 GNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSW 575
            NAEI E   K L++L P ++  +V+L NIYA +    +  ++R  M  KG++K PG S 
Sbjct: 434 KNAEIGERVGKILIQLLPQHSGYYVLLSNIYANAKEWEKVTEMRQMMKAKGLKKPPGHSL 493

Query: 576 LMRNGGIQMFLSGDKIPAQVAEI 598
           +  +G +  F  GD    ++ +I
Sbjct: 494 IELDGRVHKFTIGDSSHPEMDKI 516



 Score =  112 bits (279), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 69/280 (24%), Positives = 138/280 (49%), Gaps = 17/280 (6%)

Query: 39  QRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEE 98
           +++V   N+++  +   G    A  +F+ M   +VVSWT+MI G    G V  ARKLF++
Sbjct: 151 EKDVYVQNSLVHMYATFGDTEAATLIFQRMYYVDVVSWTSMIRGFNKCGDVESARKLFDQ 210

Query: 99  MPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLF 158
           MPE+N+V+W++M+ G  +N   ++A ++F  +  + V +   ++   +  C    A+ L 
Sbjct: 211 MPEKNLVTWSTMISGYAQNNHFDKAVELFKVLQSQGVRANETVMVSVISSCAHLGALELG 270

Query: 159 EEMEER--------NVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWN 210
           E   +         N++  T+++  Y R G +++   +F  +P ++ +SWTA+I G A +
Sbjct: 271 ERAHDYVVKNGMTLNLILGTALVDMYARCGSIDKAVWVFEDLPERDTLSWTALIAGLAMH 330

Query: 211 GFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEIS-- 268
           G+ + SL  F  M    + G      +  ++++     G +E    +F+++     +   
Sbjct: 331 GYSERSLKYFATM---VEAGLTPRDITFTAVLSACSHGGLVERGFQIFESMKRDHRVEPR 387

Query: 269 ---WTSMIDGYLSVGQVSNAYYLFHNMPDR-DAVAWTAMI 304
              +  M+D     G++  A      MP + +A  W A++
Sbjct: 388 LEHYGCMVDLLGRAGKLEEAERFVLKMPVKPNAPVWGALL 427



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 75/264 (28%), Positives = 136/264 (51%), Gaps = 20/264 (7%)

Query: 16  SSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVS 75
           S +  Y+  G  + A  +FQ M   +VVS+ +M+ GF + G +  AR+LF++MPE+N+V+
Sbjct: 159 SLVHMYATFGDTEAATLIFQRMYYVDVVSWTSMIRGFNKCGDVESARKLFDQMPEKNLVT 218

Query: 76  WTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRN---------GELNEARKV 126
           W+ MI G A      +A +LF+ +  + V +  +++V +I +         GE      V
Sbjct: 219 WSTMISGYAQNNHFDKAVELFKVLQSQGVRANETVMVSVISSCAHLGALELGERAHDYVV 278

Query: 127 FNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGY 186
            N M + N+I   A++  Y  C  + +A+ +FE++ ER+ ++WT++I+G    G  E   
Sbjct: 279 KNGMTL-NLILGTALVDMYARCGSIDKAVWVFEDLPERDTLSWTALIAGLAMHGYSERSL 337

Query: 187 CLFRRM------PRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNS 240
             F  M      PR   +++TA++   +  G  +    +F  MK   D+     ++    
Sbjct: 338 KYFATMVEAGLTPRD--ITFTAVLSACSHGGLVERGFQIFESMKR--DHRVEPRLEHYGC 393

Query: 241 MINGYIRFGRLEEAQNLFDTVPVR 264
           M++   R G+LEEA+     +PV+
Sbjct: 394 MVDLLGRAGKLEEAERFVLKMPVK 417



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 63/245 (25%), Positives = 109/245 (44%), Gaps = 49/245 (20%)

Query: 11  VVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFE---- 66
           VV  TS I  ++K G ++ A+ LF  MP++N+V+++ M+SG+ QN    +A  LF+    
Sbjct: 185 VVSWTSMIRGFNKCGDVESARKLFDQMPEKNLVTWSTMISGYAQNNHFDKAVELFKVLQS 244

Query: 67  -----------------------EMPER------------NVVSWTAMICGLADAGRVCE 91
                                  E+ ER            N++  TA++   A  G + +
Sbjct: 245 QGVRANETVMVSVISSCAHLGALELGERAHDYVVKNGMTLNLILGTALVDMYARCGSIDK 304

Query: 92  ARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMM 151
           A  +FE++PER+ +SW +++ GL  +G    + K F +M    +   +      +  C  
Sbjct: 305 AVWVFEDLPERDTLSWTALIAGLAMHGYSERSLKYFATMVEAGLTPRDITFTAVLSACSH 364

Query: 152 G----EAIVLFEEMEERNVVT-----WTSMISGYCRAGEVEEGYCLFRRMPRK-NVVSWT 201
           G        +FE M+  + V      +  M+    RAG++EE      +MP K N   W 
Sbjct: 365 GGLVERGFQIFESMKRDHRVEPRLEHYGCMVDLLGRAGKLEEAERFVLKMPVKPNAPVWG 424

Query: 202 AMIGG 206
           A++G 
Sbjct: 425 ALLGA 429



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 69/280 (24%), Positives = 115/280 (41%), Gaps = 50/280 (17%)

Query: 265 DEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMR 324
           D  S TS+ID          A  +F  + + +   + AMI G   ++   +A + +++ +
Sbjct: 61  DPSSGTSLID---------YASRIFSQIQNPNLFIFNAMIRGHSGSKNPDQAFHFYVQSQ 111

Query: 325 AHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVID 384
             G+ P N TF  L  +      I +G Q H  ++K   E D+ ++N L+ MYA  G  +
Sbjct: 112 RQGLLPDNLTFPFLVKSCTKLHCISMGSQAHGHIIKHGFEKDVYVQNSLVHMYATFGDTE 171

Query: 385 NAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLE------------------ 426
            A  IF  M   D+VSW SM+ GF+  G      K+F+ M E                  
Sbjct: 172 AATLIFQRMYYVDVVSWTSMIRGFNKCGDVESARKLFDQMPEKNLVTWSTMISGYAQNNH 231

Query: 427 -------------SGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYV 473
                         G   N    + ++S+C+H G +  G    +     Y ++ G    +
Sbjct: 232 FDKAVELFKVLQSQGVRANETVMVSVISSCAHLGALELGERAHD-----YVVKNGMTLNL 286

Query: 474 ----SMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLG 509
               +++++  R G I +A      LP E D   W AL+ 
Sbjct: 287 ILGTALVDMYARCGSIDKAVWVFEDLP-ERDTLSWTALIA 325


>gi|449476598|ref|XP_004154781.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39350-like [Cucumis sativus]
          Length = 709

 Score =  278 bits (712), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 177/569 (31%), Positives = 285/569 (50%), Gaps = 57/569 (10%)

Query: 61  ARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEM-------PER---NVVSWNSM 110
           AR+LF+++ + ++  W A+I    D G   +A ++F+ M       P++    +V     
Sbjct: 136 ARKLFDDLSDPSLFLWNAIIKMYVDKGFHFDALRVFDSMICSGKFWPDKYTFPLVIKACS 195

Query: 111 VVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWT 170
           V+ ++  G L   R + +     N+   N+++A Y+ C  +G A  +F  M +R+VV+W 
Sbjct: 196 VMSMLNVGVLIHGRALVSGFS-SNMFVQNSLLAMYMNCGKVGLARQVFNVMLKRSVVSWN 254

Query: 171 SMISGYCRAGEVEEGYCLFRRMPRKNVVSWTA-MIGGFAWNGFHKESLLLFIEMKGICDN 229
           +MISG+ + G  EE   +F  M    V   +A ++      G+ KE  L     K +  N
Sbjct: 255 TMISGWFQNGRPEEALAVFNSMMDARVEPDSATIVSALPSCGYLKELELGIKVHKLVQKN 314

Query: 230 GNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQ-------- 281
                ++  N++++ Y R G ++EA  +F     +D I+WTSMI+GY+  G         
Sbjct: 315 HLQEKIEVRNALVDMYSRCGGIDEASLVFAETKEKDVITWTSMINGYIMNGNAKSALALC 374

Query: 282 ----------------------------------VSNAYYLFHNMPDRDAVAWTAMISGL 307
                                             VS ++ +F     +  V W A++SGL
Sbjct: 375 PAMQLDGVVPNAVTLASLLSACASLCYMYAKCNAVSYSFQVFAKTSKKRTVPWNALLSGL 434

Query: 308 VQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDL 367
           + NEL  EA  LF  M    V   +ATF+ +  A    A++     +H  L+++   S +
Sbjct: 435 IHNELAREAVGLFKSMLIEEVEANHATFNSVIPAYAILADLKQVMNLHSYLVRSGFISKI 494

Query: 368 ILENCLISMYAKCGVIDNAYNIFSNMVSR--DLVSWNSMVMGFSHHGLANETLKVFESML 425
            +   LI MY+KCG +D A+ IF  + ++  D++ W+ ++ G+  HG     + +F  M+
Sbjct: 495 AVITGLIDMYSKCGSLDYAHKIFDEIPNKEKDIIVWSVLIAGYGMHGHGETAVLLFNQMV 554

Query: 426 ESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKI 485
            SG  PN +TF  +L ACSH GLV  G  LF  M + Y   P P HY  +++LLGRAG++
Sbjct: 555 HSGMQPNEITFTSVLHACSHRGLVDDGLTLFKYMIENYPSSPLPNHYTCVVDLLGRAGRL 614

Query: 486 KEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNI 545
            EA + +  +PF+ +H IWGALLGAC     N E+ E AA+RL EL+P +   +++L NI
Sbjct: 615 DEAYDLIKSMPFQQNHSIWGALLGAC-LIHQNVELGEVAAERLFELEPESTGNYILLANI 673

Query: 546 YAASGRHVEEHKLRMDMGLKGVRKVPGCS 574
           YAA GR  +   +R  M   G+RK P  S
Sbjct: 674 YAAVGRWKDAENVRHIMSKIGLRKTPAQS 702



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 76/333 (22%), Positives = 160/333 (48%), Gaps = 34/333 (10%)

Query: 1   MSERNHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSE 60
           + ++NH +  +    + +  YS+ G IDEA  +F    +++V+++ +M++G++ NG    
Sbjct: 310 LVQKNHLQEKIEVRNALVDMYSRCGGIDEASLVFAETKEKDVITWTSMINGYIMNGNAKS 369

Query: 61  ARRLFEEMPERNVV----------SWTAMICGL-ADAGRVCEARKLFEEMPERNVVSWNS 109
           A  L   M    VV          S  A +C + A    V  + ++F +  ++  V WN+
Sbjct: 370 ALALCPAMQLDGVVPNAVTLASLLSACASLCYMYAKCNAVSYSFQVFAKTSKKRTVPWNA 429

Query: 110 MVVGLIRNGELNEARKVFNSMPIKNV----ISWNAMIAGYVECCMMGEAIVLFEEMEERN 165
           ++ GLI N    EA  +F SM I+ V     ++N++I  Y     + + + L   +    
Sbjct: 430 LLSGLIHNELAREAVGLFKSMLIEEVEANHATFNSVIPAYAILADLKQVMNLHSYLVRSG 489

Query: 166 VVTWTSMISG----YCRAGEVEEGYCLFRRMP--RKNVVSWTAMIGGFAWNGFHKESLLL 219
            ++  ++I+G    Y + G ++  + +F  +P   K+++ W+ +I G+  +G  + ++LL
Sbjct: 490 FISKIAVITGLIDMYSKCGSLDYAHKIFDEIPNKEKDIIVWSVLIAGYGMHGHGETAVLL 549

Query: 220 FIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFD-------TVPVRDEISWTSM 272
           F +M     +G   N  +  S+++     G +++   LF        + P+ +   +T +
Sbjct: 550 FNQM---VHSGMQPNEITFTSVLHACSHRGLVDDGLTLFKYMIENYPSSPLPNH--YTCV 604

Query: 273 IDGYLSVGQVSNAYYLFHNMP-DRDAVAWTAMI 304
           +D     G++  AY L  +MP  ++   W A++
Sbjct: 605 VDLLGRAGRLDEAYDLIKSMPFQQNHSIWGALL 637


>gi|255559100|ref|XP_002520572.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223540232|gb|EEF41805.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 695

 Score =  278 bits (712), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 188/627 (29%), Positives = 310/627 (49%), Gaps = 68/627 (10%)

Query: 33  LFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNV----VSWTAMICGLADAGR 88
           +F+ M +R+V+++N M+S +++  R  EA R F  M +  +    VS+  +   ++  G 
Sbjct: 56  VFKTMHKRDVIAWNTMVSWYVKTERYVEAIRQFRLMMKWGIKPSPVSFVNVFPAISSVGD 115

Query: 89  VCEA-------------------------------------RKLFEEMPERNVVSWNSMV 111
              A                                     RK+F+   E++   WN+M+
Sbjct: 116 FKNANVLYGMLLKLGNEYANDLFVVSSAISMYAELGCLDLCRKVFDSCLEKSAEVWNTMI 175

Query: 112 VGLIRNGELNEARKVF------NSMPIKNVISWNAMIA-GYVECCMMGEAIVLFEEMEER 164
            G I+N    E   +F          + +V   +A+ A   ++C  +G+ +  F  M+  
Sbjct: 176 GGHIQNNSFLEGVYLFLQAMKTEHTILDDVTFLSALTAVSQLQCLGLGQQMHAFT-MKNH 234

Query: 165 NVVTWT---SMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFI 221
            V++ T   +++  Y R   V+  + +F +MP K+VVSW  MI GF  NG  +E L+L  
Sbjct: 235 TVLSVTVLNAILVMYSRCNSVQTSFEVFEKMPEKDVVSWNTMISGFIQNGLDEEGLMLVY 294

Query: 222 EMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSM----IDGYL 277
           EM+      ++  V S  S  +      R  E         +R  I +  M    ID Y 
Sbjct: 295 EMQKQGFIADSVTVTSLLSAASNL----RNREIGKQTHAYLIRHGIKFDGMDSYLIDMYA 350

Query: 278 SVG--QVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATF 335
             G  ++S   +  +N+ +RD   W A+I+G  QN L  +A   F  M    + P   T 
Sbjct: 351 KSGLIRISQRVFENNNIQNRDQATWNAVIAGYTQNGLVEQAFITFRLMLEQNLRPNAVTL 410

Query: 336 SVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVS 395
           + +  A  +  +I+LG+Q+H V ++   + ++ +   L+ MY+K G I+ A ++F+    
Sbjct: 411 ASILPACSSLGSINLGKQLHGVSIRYSLDQNIFVRTALVDMYSKSGAINYAESVFTQSSE 470

Query: 396 RDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWEL 455
           R+ V++ +M++G+  HG+    L +F SM +SG  P+++TF+ +LSACS+AGLV  G  +
Sbjct: 471 RNSVTYTTMILGYGQHGMGENALSLFHSMKKSGIQPDAITFVAVLSACSYAGLVDEGLRI 530

Query: 456 FNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDH--RIWGALLGACGF 513
           F +M   +KIQP   HY  + ++LGR G++ EA EFV +L  E  H   IWG+LLGAC  
Sbjct: 531 FESMKRDFKIQPSTAHYCCVADMLGRVGRVIEAYEFVKQLG-EEGHVIEIWGSLLGACRL 589

Query: 514 CEGNAEIAEHAAKRLLELDPLN--APAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVP 571
             G+ E+ E  + RLLE++ ++  A   V+L N+YA         KLR  M  KG+RK  
Sbjct: 590 -HGHIELGEEVSNRLLEMNSVDRLAGYQVLLSNMYAEEANWETVDKLRKSMREKGLRKEV 648

Query: 572 GCSWLMRNGGIQMFLSGDKIPAQVAEI 598
           GCSW+   G +  F+S DK   +  EI
Sbjct: 649 GCSWIDTGGLLVRFVSKDKDHTRCEEI 675



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 128/554 (23%), Positives = 223/554 (40%), Gaps = 115/554 (20%)

Query: 94  KLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSM--------PIK--NVISWNAMIA 143
           K+F+ M +R+V++WN+MV   ++     EA + F  M        P+   NV    + + 
Sbjct: 55  KVFKTMHKRDVIAWNTMVSWYVKTERYVEAIRQFRLMMKWGIKPSPVSFVNVFPAISSVG 114

Query: 144 GYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAM 203
            +    ++   ++        ++   +S IS Y   G ++    +F     K+   W  M
Sbjct: 115 DFKNANVLYGMLLKLGNEYANDLFVVSSAISMYAELGCLDLCRKVFDSCLEKSAEVWNTM 174

Query: 204 IGGFAWNGFHKESLLLFIE-MK---GICD-----------------------------NG 230
           IGG   N    E + LF++ MK    I D                             N 
Sbjct: 175 IGGHIQNNSFLEGVYLFLQAMKTEHTILDDVTFLSALTAVSQLQCLGLGQQMHAFTMKNH 234

Query: 231 NNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFH 290
              +V   N+++  Y R   ++ +  +F+ +P +D +SW +M                  
Sbjct: 235 TVLSVTVLNAILVMYSRCNSVQTSFEVFEKMPEKDVVSWNTM------------------ 276

Query: 291 NMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDL 350
                        ISG +QN L  E   L  EM+  G    + T + L  AA    N ++
Sbjct: 277 -------------ISGFIQNGLDEEGLMLVYEMQKQGFIADSVTVTSLLSAASNLRNREI 323

Query: 351 GRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIF--SNMVSRDLVSWNSMVMGF 408
           G+Q H  L++   + D  +++ LI MYAK G+I  +  +F  +N+ +RD  +WN+++ G+
Sbjct: 324 GKQTHAYLIRHGIKFD-GMDSYLIDMYAKSGLIRISQRVFENNNIQNRDQATWNAVIAGY 382

Query: 409 SHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELF------------ 456
           + +GL  +    F  MLE    PN+VT   IL ACS  G ++ G +L             
Sbjct: 383 TQNGLVEQAFITFRLMLEQNLRPNAVTLASILPACSSLGSINLGKQLHGVSIRYSLDQNI 442

Query: 457 ---NAMFDVYKIQPGPEH---------------YVSMINLLGRAGKIKEAEEFVLRLP-- 496
               A+ D+Y       +               Y +MI   G+ G  + A      +   
Sbjct: 443 FVRTALVDMYSKSGAINYAESVFTQSSERNSVTYTTMILGYGQHGMGENALSLFHSMKKS 502

Query: 497 -FEPDHRIWGALLGAC---GFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRH 552
             +PD   + A+L AC   G  +    I E + KR  ++ P  A  +  + ++    GR 
Sbjct: 503 GIQPDAITFVAVLSACSYAGLVDEGLRIFE-SMKRDFKIQPSTAH-YCCVADMLGRVGRV 560

Query: 553 VEEHKLRMDMGLKG 566
           +E ++    +G +G
Sbjct: 561 IEAYEFVKQLGEEG 574



 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 90/412 (21%), Positives = 178/412 (43%), Gaps = 94/412 (22%)

Query: 14  LTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEE------ 67
           ++S+I+ Y++ G +D  + +F    +++   +N M+ G +QN    E   LF +      
Sbjct: 140 VSSAISMYAELGCLDLCRKVFDSCLEKSAEVWNTMIGGHIQNNSFLEGVYLFLQAMKTEH 199

Query: 68  -------------------------------MPERNVVSWT---AMICGLADAGRVCEAR 93
                                          M    V+S T   A++   +    V  + 
Sbjct: 200 TILDDVTFLSALTAVSQLQCLGLGQQMHAFTMKNHTVLSVTVLNAILVMYSRCNSVQTSF 259

Query: 94  KLFEEMPERNVVSWNSMVVGLIRNG----------ELNEARKVFNSMPIKNVISWNA--- 140
           ++FE+MPE++VVSWN+M+ G I+NG          E+ +   + +S+ + +++S  +   
Sbjct: 260 EVFEKMPEKDVVSWNTMISGFIQNGLDEEGLMLVYEMQKQGFIADSVTVTSLLSAASNLR 319

Query: 141 -------------------------MIAGYVECCMMGEAIVLFE--EMEERNVVTWTSMI 173
                                    +I  Y +  ++  +  +FE   ++ R+  TW ++I
Sbjct: 320 NREIGKQTHAYLIRHGIKFDGMDSYLIDMYAKSGLIRISQRVFENNNIQNRDQATWNAVI 379

Query: 174 SGYCRAGEVEEGYCLFRRM----PRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDN 229
           +GY + G VE+ +  FR M     R N V+  +++   +  G    S+ L  ++ G+   
Sbjct: 380 AGYTQNGLVEQAFITFRLMLEQNLRPNAVTLASILPACSSLG----SINLGKQLHGVSIR 435

Query: 230 GN-NCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYL 288
            + + N+    ++++ Y + G +  A+++F     R+ +++T+MI GY   G   NA  L
Sbjct: 436 YSLDQNIFVRTALVDMYSKSGAINYAESVFTQSSERNSVTYTTMILGYGQHGMGENALSL 495

Query: 289 FHNMPDR----DAVAWTAMISGLVQNELFVEATYLFMEM-RAHGVPPLNATF 335
           FH+M       DA+ + A++S      L  E   +F  M R   + P  A +
Sbjct: 496 FHSMKKSGIQPDAITFVAVLSACSYAGLVDEGLRIFESMKRDFKIQPSTAHY 547



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 64/269 (23%), Positives = 124/269 (46%), Gaps = 48/269 (17%)

Query: 4   RNHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARR 63
           +NH    V  L + +  YS+   +  +  +F+ MP+++VVS+N M+SGF+QNG   E   
Sbjct: 232 KNHTVLSVTVLNAILVMYSRCNSVQTSFEVFEKMPEKDVVSWNTMISGFIQNGLDEEGLM 291

Query: 64  LFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPE---RNVVSWNSMVVGLI----R 116
           L  EM ++  ++ +  +  L  A      R++ ++      R+ + ++ M   LI    +
Sbjct: 292 LVYEMQKQGFIADSVTVTSLLSAASNLRNREIGKQTHAYLIRHGIKFDGMDSYLIDMYAK 351

Query: 117 NGELNEARKVFNSMPIKN--VISWNAMIAGYVECCMMGEAIVLFEEMEE----------- 163
           +G +  +++VF +  I+N    +WNA+IAGY +  ++ +A + F  M E           
Sbjct: 352 SGLIRISQRVFENNNIQNRDQATWNAVIAGYTQNGLVEQAFITFRLMLEQNLRPNAVTLA 411

Query: 164 ----------------------------RNVVTWTSMISGYCRAGEVEEGYCLFRRMPRK 195
                                       +N+   T+++  Y ++G +     +F +   +
Sbjct: 412 SILPACSSLGSINLGKQLHGVSIRYSLDQNIFVRTALVDMYSKSGAINYAESVFTQSSER 471

Query: 196 NVVSWTAMIGGFAWNGFHKESLLLFIEMK 224
           N V++T MI G+  +G  + +L LF  MK
Sbjct: 472 NSVTYTTMILGYGQHGMGENALSLFHSMK 500



 Score = 41.2 bits (95), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 18/61 (29%), Positives = 33/61 (54%)

Query: 387 YNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHA 446
           + +F  M  RD+++WN+MV  +       E ++ F  M++ G  P+ V+F+ +  A S  
Sbjct: 54  HKVFKTMHKRDVIAWNTMVSWYVKTERYVEAIRQFRLMMKWGIKPSPVSFVNVFPAISSV 113

Query: 447 G 447
           G
Sbjct: 114 G 114


>gi|345505204|gb|AEN99826.1| chlororespiratory reduction 4, partial [Aethionema cordifolium]
          Length = 587

 Score =  278 bits (712), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 157/482 (32%), Positives = 259/482 (53%), Gaps = 46/482 (9%)

Query: 111 VVGL-IRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEM--EERNVV 167
           ++GL ++ G L  AR++F+ MP ++ +S+N+MI GYV+C ++G A  LF+ M  E +N++
Sbjct: 140 LIGLYLKCGCLGFARQIFDRMPQRDSVSYNSMIDGYVKCGLIGSARELFDLMPKEMKNLI 199

Query: 168 TWTSMISGYCRAGE-VEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGI 226
           +W SMISGY +  + V     LF  MP K+++SW                          
Sbjct: 200 SWNSMISGYAQTSDGVNIASKLFAEMPEKDLISW-------------------------- 233

Query: 227 CDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAY 286
                       NS+I+GY++ GR+E+A++LF  +P RD ++W +MIDGY  +G V  A 
Sbjct: 234 ------------NSLIDGYVKHGRMEDAKDLFYVMPRRDVVTWATMIDGYAKLGFVHKAK 281

Query: 287 YLFHNMPDRDAVAWTAMISGLVQNELFVEATYLF--MEMRAHGVPPLNATFSVLFGAAGA 344
            LF  MP RD VA+ +M++G VQN+  +EA  +F  ME  +H + P   T  ++  A   
Sbjct: 282 TLFDQMPHRDVVAYNSMMAGYVQNKYHMEALEIFNNMEKDSH-LSPDETTLVIVLSAIAQ 340

Query: 345 TANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSM 404
              +     ++  +++        L   LI M++KCG I  A ++F  + ++ +  WN+M
Sbjct: 341 LGRLSKAMSMNKYIVEKSFPLGGKLGVALIDMHSKCGSIQQAISVFEGIKNKSIDHWNAM 400

Query: 405 VMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYK 464
           + G + HG       +   +      P+ +TF+G+L+ACSH+GLV  G   F  M   +K
Sbjct: 401 IGGLAIHGHGELAFDMLMQIERCSIKPDDITFIGVLNACSHSGLVKEGLLSFELMRRKHK 460

Query: 465 IQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHA 524
           I+P  +HY  ++++L R+G I+ A+  +  +P EP+  IW   L AC       EI E  
Sbjct: 461 IEPRLQHYGCIVDILSRSGSIELAKHLIEDMPMEPNDVIWRTFLIACR-NRKEFEIGELV 519

Query: 525 AKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQM 584
           AK L+     N  ++V+L N+YA+ G   +  ++RM M  + + K+PGCSW+  +G +  
Sbjct: 520 AKHLILQAGYNPSSYVLLSNMYASLGMWKDVRRVRMMMKQRKLHKIPGCSWIELDGNVHE 579

Query: 585 FL 586
           F 
Sbjct: 580 FF 581



 Score =  177 bits (449), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 123/443 (27%), Positives = 228/443 (51%), Gaps = 32/443 (7%)

Query: 22  SKRGFIDEAKALFQLMPQRNVVS----YNAMLSGFLQNGRLSEARRLFEEMPERNVVSWT 77
           S+ GF+ E   +   + +  + S     N ++  +L+ G L  AR++F+ MP+R+ VS+ 
Sbjct: 110 SRLGFVQEGMQIHGFLRKTGIWSDLFLQNCLIGLYLKCGCLGFARQIFDRMPQRDSVSYN 169

Query: 78  AMICGLADAGRVCEARKLFEEMPE--RNVVSWNSMVVGLIRNGE-LNEARKVFNSMPIKN 134
           +MI G    G +  AR+LF+ MP+  +N++SWNSM+ G  +  + +N A K+F  MP K+
Sbjct: 170 SMIDGYVKCGLIGSARELFDLMPKEMKNLISWNSMISGYAQTSDGVNIASKLFAEMPEKD 229

Query: 135 VISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPR 194
           +ISWN++I GYV+   M +A  LF  M  R+VVTW +MI GY + G V +   LF +MP 
Sbjct: 230 LISWNSLIDGYVKHGRMEDAKDLFYVMPRRDVVTWATMIDGYAKLGFVHKAKTLFDQMPH 289

Query: 195 KNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEA 254
           ++VV++ +M+ G+  N +H E+L +F  M+   D+  + +  +   +++   + GRL +A
Sbjct: 290 RDVVAYNSMMAGYVQNKYHMEALEIFNNMEK--DSHLSPDETTLVIVLSAIAQLGRLSKA 347

Query: 255 QNLFDTV-----PVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQ 309
            ++   +     P+  ++   ++ID +   G +  A  +F  + ++    W AMI GL  
Sbjct: 348 MSMNKYIVEKSFPLGGKLG-VALIDMHSKCGSIQQAISVFEGIKNKSIDHWNAMIGGLAI 406

Query: 310 NELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLG-RQIHCVLMKTESESDLI 368
           +     A  + M++    + P + TF  +  A   +  +  G      +  K + E  L 
Sbjct: 407 HGHGELAFDMLMQIERCSIKPDDITFIGVLNACSHSGLVKEGLLSFELMRRKHKIEPRLQ 466

Query: 369 LENCLISMYAKCGVIDNAYNIFSNM-VSRDLVSWNSMVMGFSHHGLANETLKVFES---- 423
              C++ + ++ G I+ A ++  +M +  + V W + +       +A    K FE     
Sbjct: 467 HYGCIVDILSRSGSIELAKHLIEDMPMEPNDVIWRTFL-------IACRNRKEFEIGELV 519

Query: 424 ----MLESGTHPNSVTFLGILSA 442
               +L++G +P+S   L  + A
Sbjct: 520 AKHLILQAGYNPSSYVLLSNMYA 542



 Score =  119 bits (298), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 83/345 (24%), Positives = 178/345 (51%), Gaps = 40/345 (11%)

Query: 7   PKSL--VVHLTSSITKYSKRGF-IDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARR 63
           PK +  ++   S I+ Y++    ++ A  LF  MP+++++S+N+++ G++++GR+ +A+ 
Sbjct: 192 PKEMKNLISWNSMISGYAQTSDGVNIASKLFAEMPEKDLISWNSLIDGYVKHGRMEDAKD 251

Query: 64  LFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEA 123
           LF  MP R+VV+W  MI G A  G V +A+ LF++MP R+VV++NSM+ G ++N    EA
Sbjct: 252 LFYVMPRRDVVTWATMIDGYAKLGFVHKAKTLFDQMPHRDVVAYNSMMAGYVQNKYHMEA 311

Query: 124 RKVFNSMPIKNVISWNA-----MIAGYVECCMMGEAIVLFEEMEERNV----VTWTSMIS 174
            ++FN+M   + +S +      +++   +   + +A+ + + + E++         ++I 
Sbjct: 312 LEIFNNMEKDSHLSPDETTLVIVLSAIAQLGRLSKAMSMNKYIVEKSFPLGGKLGVALID 371

Query: 175 GYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCN 234
            + + G +++   +F  +  K++  W AMIGG A +G  + +  + ++++        C+
Sbjct: 372 MHSKCGSIQQAISVFEGIKNKSIDHWNAMIGGLAIHGHGELAFDMLMQIE-------RCS 424

Query: 235 VQSCN----SMINGYIRFGRLEEAQNLFDTVPVRDEIS-----WTSMIDGYLSVGQVSNA 285
           ++  +     ++N     G ++E    F+ +  + +I      +  ++D     G +  A
Sbjct: 425 IKPDDITFIGVLNACSHSGLVKEGLLSFELMRRKHKIEPRLQHYGCIVDILSRSGSIELA 484

Query: 286 YYLFHNMP-DRDAVAWTAM-----------ISGLVQNELFVEATY 318
            +L  +MP + + V W              I  LV   L ++A Y
Sbjct: 485 KHLIEDMPMEPNDVIWRTFLIACRNRKEFEIGELVAKHLILQAGY 529



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 67/243 (27%), Positives = 109/243 (44%), Gaps = 22/243 (9%)

Query: 296 DAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIH 355
           D   W A+I           A   F  M  +GV     + S++  A      +  G QIH
Sbjct: 63  DPFLWNAVIKSHSHGVDPKRALIWFCLMLENGVSVDKFSLSLVLKACSRLGFVQEGMQIH 122

Query: 356 CVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLAN 415
             L KT   SDL L+NCLI +Y KCG +  A  IF  M  RD VS+NSM+ G+   GL  
Sbjct: 123 GFLRKTGIWSDLFLQNCLIGLYLKCGCLGFARQIFDRMPQRDSVSYNSMIDGYVKCGLIG 182

Query: 416 ETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEH---- 471
              ++F+ M +     N +++  ++S  +     S G  + + +F        PE     
Sbjct: 183 SARELFDLMPKE--MKNLISWNSMISGYAQT---SDGVNIASKLF-----AEMPEKDLIS 232

Query: 472 YVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIA-EHAAKRLLE 530
           + S+I+   + G++++A++    +P   D   W  ++      +G A++   H AK L +
Sbjct: 233 WNSLIDGYVKHGRMEDAKDLFYVMP-RRDVVTWATMI------DGYAKLGFVHKAKTLFD 285

Query: 531 LDP 533
             P
Sbjct: 286 QMP 288


>gi|359475368|ref|XP_003631669.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Vitis vinifera]
          Length = 891

 Score =  278 bits (712), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 184/647 (28%), Positives = 317/647 (48%), Gaps = 80/647 (12%)

Query: 15  TSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEM------ 68
           T  +  Y+  G +  ++  F  +PQ++V ++N+M+S ++ NG   EA   F ++      
Sbjct: 155 TRLVNLYANLGDVSLSRCTFDQIPQKDVYAWNSMISAYVHNGHFHEAIGCFYQLLLVSEI 214

Query: 69  -PERNVVSWTAMICGLADAGRVCE------------------------------ARKLFE 97
            P+          CG    GR                                 AR LF+
Sbjct: 215 RPDFYTFPPVLKACGTLVDGRKIHCWAFKLGFQWNVFVAASLIHMYSRFGFTGIARSLFD 274

Query: 98  EMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNV-ISWNAMIAGYVECCMMGEA-- 154
           +MP R++ SWN+M+ GLI+NG   +A  V + M ++ + +++  +++    C  +G+   
Sbjct: 275 DMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGIKMNFVTVVSILPVCPQLGDIST 334

Query: 155 -----IVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGF-- 207
                + + +   E ++    ++I+ Y + G +E+    F++M   +VVSW ++I  +  
Sbjct: 335 AMLIHLYVIKHGLEFDLFVSNALINMYAKFGNLEDARKAFQQMFITDVVSWNSIIAAYEQ 394

Query: 208 --------------AWNGFHKESLLLFIEMKGICDNGNNC-NVQSCNSMINGYIRFGRLE 252
                           NGF  + LL  + +  I     +C N +S +  I   +R G L 
Sbjct: 395 NDDPVTAHGFFVKMQLNGFQPD-LLTLVSLASIVAQSRDCKNSRSVHGFI---MRRGWLM 450

Query: 253 EAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNEL 312
           E           D +   +++D Y  +G + +A+ +F  +P +D ++W  +I+G  QN L
Sbjct: 451 E-----------DVVIGNAVVDMYAKLGLLDSAHKVFEIIPVKDVISWNTLITGYAQNGL 499

Query: 313 FVEATYLFMEMR-AHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILEN 371
             EA  ++  M     + P   T+  +  A      +  G +IH  ++KT    D+ +  
Sbjct: 500 ASEAIEVYKMMEECKEIIPNQGTWVSILPAYAHVGALQQGMKIHGRVIKTNLHLDVFVAT 559

Query: 372 CLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHP 431
           CLI +Y KCG + +A ++F  +     V+WN+++     HG A +TLK+F  ML+ G  P
Sbjct: 560 CLIDVYGKCGRLVDAMSLFYQVPQESSVTWNAIISCHGIHGHAEKTLKLFGEMLDEGVKP 619

Query: 432 NSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEF 491
           + VTF+ +LSACSH+G V  G   F  M + Y I+P  +HY  M++LLGRAG ++ A +F
Sbjct: 620 DHVTFVSLLSACSHSGFVEEGKWCFRLMQE-YGIKPSLKHYGCMVDLLGRAGYLEMAYDF 678

Query: 492 VLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGR 551
           +  +P +PD  IWGALLGAC    GN E+ + A+ RL E+D  N   +V+L NIYA  G+
Sbjct: 679 IKDMPLQPDASIWGALLGACRI-HGNIELGKFASDRLFEVDSKNVGYYVLLSNIYANVGK 737

Query: 552 HVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
                K+R     +G++K PG S +  N  + +F +G++   +  EI
Sbjct: 738 WEGVDKVRSLARERGLKKTPGWSTIEVNRKVDVFYTGNQSHPKCKEI 784



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 42/175 (24%), Positives = 79/175 (45%), Gaps = 9/175 (5%)

Query: 335 FSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMV 394
           F+ LF ++  T      + +H +L+       + +   L+++YA  G +  +   F  + 
Sbjct: 122 FNFLFDSSTKTP---FAKCLHALLVVAGKVQSIFISTRLVNLYANLGDVSLSRCTFDQIP 178

Query: 395 SRDLVSWNSMVMGFSHHGLANETLKVF-ESMLESGTHPNSVTFLGILSACSHAGLVSRGW 453
            +D+ +WNSM+  + H+G  +E +  F + +L S   P+  TF  +L AC   G +  G 
Sbjct: 179 QKDVYAWNSMISAYVHNGHFHEAIGCFYQLLLVSEIRPDFYTFPPVLKAC---GTLVDGR 235

Query: 454 ELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALL 508
           ++    F +   Q       S+I++  R G    A      +PF  D   W A++
Sbjct: 236 KIHCWAFKL-GFQWNVFVAASLIHMYSRFGFTGIARSLFDDMPFR-DMGSWNAMI 288


>gi|296090723|emb|CBI41122.3| unnamed protein product [Vitis vinifera]
          Length = 634

 Score =  278 bits (712), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 169/538 (31%), Positives = 279/538 (51%), Gaps = 50/538 (9%)

Query: 92  ARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMM 151
           A K+F++MPERN+V+W  M+    + G   +A  +F  M +   +      +  +  C  
Sbjct: 9   AYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTE 68

Query: 152 GEAIVLFEEMEER--------NVVTWTSMISGYCRA---GEVEEGYCLFRRMPRKNVVSW 200
              + L +++  R        +V    S++  Y +    G V++   +F +MP  NV+SW
Sbjct: 69  LGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSW 128

Query: 201 TAMIGGFAWNG-FHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGR------LEE 253
           TA+I  +A +G   KE++ LF +M                  I+G+IR         L+ 
Sbjct: 129 TAIITAYAQSGECDKEAIELFCKM------------------ISGHIRPNHFSFSSVLKA 170

Query: 254 AQNLFDTVPVRDEISWT-------------SMIDGYLSVGQVSNAYYLFHNMPDRDAVAW 300
             NL D        S+              S+I  Y   G++ +A   F  + +++ V++
Sbjct: 171 CGNLSDPYTGEQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSY 230

Query: 301 TAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMK 360
            A++ G  +N    EA  LF E+   G+     TF+ L   A +   +  G QIH  L+K
Sbjct: 231 NAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLK 290

Query: 361 TESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKV 420
              +S+  + N LISMY++CG I+ A+ +F+ M  R+++SW SM+ GF+ HG A   L++
Sbjct: 291 GGYKSNQCICNALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEM 350

Query: 421 FESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLG 480
           F  MLE+GT PN +T++ +LSACSH G++S G + FN+M+  + I P  EHY  M++LLG
Sbjct: 351 FHKMLETGTKPNEITYVAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLG 410

Query: 481 RAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHV 540
           R+G + EA EF+  +P   D  +W  LLGAC    GN E+  HAA+ +LE +P +  A++
Sbjct: 411 RSGLLVEAMEFINSMPLMADALVWRTLLGACRV-HGNTELGRHAAEMILEQEPDDPAAYI 469

Query: 541 VLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
           +L N++A++G+  +  K+R  M  + + K  GCSW+     +  F  G+    Q  +I
Sbjct: 470 LLSNLHASAGQWKDVVKIRKSMKERNLIKEAGCSWIEVENRVHRFHVGETSHPQAWQI 527



 Score =  118 bits (296), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 110/440 (25%), Positives = 203/440 (46%), Gaps = 38/440 (8%)

Query: 1   MSERNHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVV----SYNAMLSGFLQNG 56
           M ERN     +V  T  IT++++ G   +A  LF  M     V    +Y+++LS   + G
Sbjct: 16  MPERN-----LVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTELG 70

Query: 57  RLSEARRLFEEMPERNVVSWTAMICGLAD-------AGRVCEARKLFEEMPERNVVSWNS 109
            L+  ++L   +    +     + C L D        G V ++RK+FE+MPE NV+SW +
Sbjct: 71  LLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTA 130

Query: 110 MVVGLIRNGELN-EARKVFNSMPIKNVISWNAMIAGYVECC------MMGEAIVLFE--- 159
           ++    ++GE + EA ++F  M   ++   +   +  ++ C        GE +  +    
Sbjct: 131 IITAYAQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAVKL 190

Query: 160 EMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLL 219
            +   N V   S+IS Y R+G +E+    F  +  KN+VS+ A++ G+A N   +E+ LL
Sbjct: 191 GIASVNCVG-NSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLL 249

Query: 220 FIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQN----LFDTVPVRDEISWTSMIDG 275
           F E   I D G   +  +  S+++G    G + + +     L       ++    ++I  
Sbjct: 250 FNE---IADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISM 306

Query: 276 YLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATF 335
           Y   G +  A+ +F+ M DR+ ++WT+MI+G  ++     A  +F +M   G  P   T+
Sbjct: 307 YSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITY 366

Query: 336 SVLFGAAGATANIDLGRQIHCVLMKTESESDLILEN--CLISMYAKCGVIDNAYNIFSNM 393
             +  A      I  G Q H   M  E      +E+  C++ +  + G++  A    ++M
Sbjct: 367 VAVLSACSHVGMISEG-QKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSM 425

Query: 394 -VSRDLVSWNSMVMGFSHHG 412
            +  D + W +++     HG
Sbjct: 426 PLMADALVWRTLLGACRVHG 445



 Score = 58.9 bits (141), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 46/153 (30%), Positives = 81/153 (52%), Gaps = 16/153 (10%)

Query: 46  NAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPER--- 102
           NA++S + + G +  A ++F EM +RNV+SWT+MI G A  G    A ++F +M E    
Sbjct: 301 NALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTK 360

Query: 103 -NVVSWNSMVVGLIRNGELNEARKVFNSMPIKN-VISWNAMIAGYVECCMMGEAIVLFEE 160
            N +++ +++      G ++E +K FNSM  ++ ++      A  V+  ++G + +L E 
Sbjct: 361 PNEITYVAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVD--LLGRSGLLVEA 418

Query: 161 MEERN-------VVTWTSMISGYCRA-GEVEEG 185
           ME  N        + W +++ G CR  G  E G
Sbjct: 419 MEFINSMPLMADALVWRTLL-GACRVHGNTELG 450


>gi|15228653|ref|NP_189568.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75273910|sp|Q9LS72.1|PP261_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g29230
 gi|9293916|dbj|BAB01819.1| unnamed protein product [Arabidopsis thaliana]
 gi|332644032|gb|AEE77553.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 600

 Score =  278 bits (712), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 172/542 (31%), Positives = 278/542 (51%), Gaps = 51/542 (9%)

Query: 61  ARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIR--NG 118
           A R+F ++ E NV    ++I   A   +  +A  +F EM    + + N     L++  +G
Sbjct: 70  AVRVFNQVQEPNVHLCNSLIRAHAQNSQPYQAFFVFSEMQRFGLFADNFTYPFLLKACSG 129

Query: 119 E--LNEARKVFNSMPI----KNVISWNAMIAGYVECCMMG--EAIVLFEEMEERNVVTWT 170
           +  L   + + N +       ++   NA+I  Y  C  +G  +A+ LFE+M ER+ V+W 
Sbjct: 130 QSWLPVVKMMHNHIEKLGLSSDIYVPNALIDCYSRCGGLGVRDAMKLFEKMSERDTVSWN 189

Query: 171 SMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNG 230
           SM+ G  +AGE+ +   LF  MP+++++SW                              
Sbjct: 190 SMLGGLVKAGELRDARRLFDEMPQRDLISW------------------------------ 219

Query: 231 NNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFH 290
                   N+M++GY R   + +A  LF+ +P R+ +SW++M+ GY   G +  A  +F 
Sbjct: 220 --------NTMLDGYARCREMSKAFELFEKMPERNTVSWSTMVMGYSKAGDMEMARVMFD 271

Query: 291 NMP--DRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANI 348
            MP   ++ V WT +I+G  +  L  EA  L  +M A G+    A    +  A   +  +
Sbjct: 272 KMPLPAKNVVTWTIIIAGYAEKGLLKEADRLVDQMVASGLKFDAAAVISILAACTESGLL 331

Query: 349 DLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGF 408
            LG +IH +L ++   S+  + N L+ MYAKCG +  A+++F+++  +DLVSWN+M+ G 
Sbjct: 332 SLGMRIHSILKRSNLGSNAYVLNALLDMYAKCGNLKKAFDVFNDIPKKDLVSWNTMLHGL 391

Query: 409 SHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPG 468
             HG   E +++F  M   G  P+ VTF+ +L +C+HAGL+  G + F +M  VY + P 
Sbjct: 392 GVHGHGKEAIELFSRMRREGIRPDKVTFIAVLCSCNHAGLIDEGIDYFYSMEKVYDLVPQ 451

Query: 469 PEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRL 528
            EHY  +++LLGR G++KEA + V  +P EP+  IWGALLGAC       +IA+     L
Sbjct: 452 VEHYGCLVDLLGRVGRLKEAIKVVQTMPMEPNVVIWGALLGACRM-HNEVDIAKEVLDNL 510

Query: 529 LELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSG 588
           ++LDP +   + +L NIYAA+        +R  M   GV K  G S +    GI  F   
Sbjct: 511 VKLDPCDPGNYSLLSNIYAAAEDWEGVADIRSKMKSMGVEKPSGASSVELEDGIHEFTVF 570

Query: 589 DK 590
           DK
Sbjct: 571 DK 572



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 104/364 (28%), Positives = 182/364 (50%), Gaps = 50/364 (13%)

Query: 27  IDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADA 86
           + +A  LF+ M +R+ VS+N+ML G ++ G L +ARRLF+EMP+R+++SW  M+ G A  
Sbjct: 170 VRDAMKLFEKMSERDTVSWNSMLGGLVKAGELRDARRLFDEMPQRDLISWNTMLDGYARC 229

Query: 87  GRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPI--KNVISWNAMIAG 144
             + +A +LFE+MPERN VSW++MV+G  + G++  AR +F+ MP+  KNV++W  +IAG
Sbjct: 230 REMSKAFELFEKMPERNTVSWSTMVMGYSKAGDMEMARVMFDKMPLPAKNVVTWTIIIAG 289

Query: 145 YVECCMMGEAIVLFEEMEE---------------------------------------RN 165
           Y E  ++ EA  L ++M                                          N
Sbjct: 290 YAEKGLLKEADRLVDQMVASGLKFDAAAVISILAACTESGLLSLGMRIHSILKRSNLGSN 349

Query: 166 VVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMK- 224
                +++  Y + G +++ + +F  +P+K++VSW  M+ G   +G  KE++ LF  M+ 
Sbjct: 350 AYVLNALLDMYAKCGNLKKAFDVFNDIPKKDLVSWNTMLHGLGVHGHGKEAIELFSRMRR 409

Query: 225 -GICDNGNNCNVQSCNSMINGYIRFG--RLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQ 281
            GI  +        C+    G I  G       + ++D VP  +   +  ++D    VG+
Sbjct: 410 EGIRPDKVTFIAVLCSCNHAGLIDEGIDYFYSMEKVYDLVPQVEH--YGCLVDLLGRVGR 467

Query: 282 VSNAYYLFHNMP-DRDAVAWTAMISGL-VQNELFVEATYLFMEMRAHGVPPLN-ATFSVL 338
           +  A  +   MP + + V W A++    + NE+ +    L   ++     P N +  S +
Sbjct: 468 LKEAIKVVQTMPMEPNVVIWGALLGACRMHNEVDIAKEVLDNLVKLDPCDPGNYSLLSNI 527

Query: 339 FGAA 342
           + AA
Sbjct: 528 YAAA 531



 Score = 38.5 bits (88), Expect = 9.2,   Method: Compositional matrix adjust.
 Identities = 23/99 (23%), Positives = 47/99 (47%)

Query: 346 ANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMV 405
           AN++  +Q+H  +++     DL +   LIS  + C   + A  +F+ +   ++   NS++
Sbjct: 30  ANLNQVKQLHAQIIRRNLHEDLHIAPKLISALSLCRQTNLAVRVFNQVQEPNVHLCNSLI 89

Query: 406 MGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACS 444
              + +    +   VF  M   G   ++ T+  +L ACS
Sbjct: 90  RAHAQNSQPYQAFFVFSEMQRFGLFADNFTYPFLLKACS 128


>gi|449455978|ref|XP_004145727.1| PREDICTED: uncharacterized protein LOC101212001 [Cucumis sativus]
          Length = 2598

 Score =  278 bits (712), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 172/519 (33%), Positives = 272/519 (52%), Gaps = 29/519 (5%)

Query: 95   LFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECC----- 149
             ++ + + NV SWNS++  L R G+  EA + F+S+    +I   +     ++ C     
Sbjct: 1971 FYKYVDKSNVHSWNSVIADLARGGDSVEALRAFSSLRKLGLIPTRSSFPCTIKSCSALCD 2030

Query: 150  -----MMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMI 204
                 M  +   +F    E ++   +++I  Y + G++++   LF  +P +NVVSWT+MI
Sbjct: 2031 LVSGRMSHQQAFVFGF--ETDLFVSSALIDMYSKCGQLKDARALFDEIPLRNVVSWTSMI 2088

Query: 205  GGFAWNGFHKESLLLF---IEMKGICDNGNNC--------NVQSCNSMINGYIRFGRLEE 253
             G+  N     +LLLF   +E +   ++GNN         +V S  S ++G    G  E 
Sbjct: 2089 TGYVQNEQADNALLLFKDFLEEETEVEDGNNVPLDSVVMVSVLSACSRVSGK---GITEG 2145

Query: 254  AQNLFDTVPVRDEIS-WTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNEL 312
                         I    +++D Y   GQ   +  +F  M ++D ++W +MI+   Q+ L
Sbjct: 2146 VHGFVVKKGFDGSIGVGNTLMDAYAKCGQPLVSKKVFDWMEEKDDISWNSMIAVYAQSGL 2205

Query: 313  FVEATYLFMEMRAH-GVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILEN 371
              EA  +F  M  H GV     T S +  A      +  G+ IH  ++K + E ++ +  
Sbjct: 2206 SGEALEVFHGMVRHVGVRYNAVTLSAVLLACAHAGALRAGKCIHDQVIKMDLEYNVCVGT 2265

Query: 372  CLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHP 431
             +I MY KCG ++ A   F  M  +++ SW +MV G+  HG A E L +F  M+ +G  P
Sbjct: 2266 SIIDMYCKCGRVEMAKKTFDRMKEKNVKSWTAMVAGYGMHGRAKEALDIFYKMVRAGVKP 2325

Query: 432  NSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEF 491
            N +TF+ +L+ACSHAGLV  GW  FNAM   Y I+PG EHY  M++L GRAG + EA   
Sbjct: 2326 NYITFVSVLAACSHAGLVEEGWHWFNAMKHKYDIEPGIEHYGCMVDLFGRAGCLNEAYNL 2385

Query: 492  VLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGR 551
            + R+  +PD  +WG+LLGAC     N ++ E AA++L ELDP N   +V+L N+YA +GR
Sbjct: 2386 IKRMKMKPDFVVWGSLLGACRI-HKNVDLGEIAAQKLFELDPDNCGYYVLLSNLYADAGR 2444

Query: 552  HVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDK 590
              +  ++RM M  + + K PG S +   G + +FL GDK
Sbjct: 2445 WADVERMRMLMKNRQLVKPPGFSLVELKGRVHVFLVGDK 2483



 Score =  179 bits (453), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 109/350 (31%), Positives = 164/350 (46%), Gaps = 32/350 (9%)

Query: 171 SMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEM--KGI-- 226
            +I  Y   G +     LF ++      +W  +I     NG  +++L+L+  M  +GI  
Sbjct: 64  KLIHLYSTHGRIAYAILLFYQIQNPCTFTWNLIIRANTINGLSEQALMLYKNMVCQGIAA 123

Query: 227 -----------CDN-----------------GNNCNVQSCNSMINGYIRFGRLEEAQNLF 258
                      C N                 G + +V   N++I+ Y + G    A  +F
Sbjct: 124 DKFTFPFVIKACTNFLSIDLGKVVHGSLIKYGFSGDVFVQNNLIDFYFKCGHTRFALKVF 183

Query: 259 DTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATY 318
           + + VR+ +SWT++I G +S G +  A  +F  +P ++ V+WTAMI+G ++N+   EA  
Sbjct: 184 EKMRVRNVVSWTTVISGLISCGDLQEARRIFDEIPSKNVVSWTAMINGYIRNQQPEEALE 243

Query: 319 LFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYA 378
           LF  M+A  + P   T   L  A      + LGR IH   +K   E  + L   LI MY+
Sbjct: 244 LFKRMQAENIFPNEYTMVSLIKACTEMGILTLGRGIHDYAIKNCIEIGVYLGTALIDMYS 303

Query: 379 KCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLG 438
           KCG I +A  +F  M  + L +WNSM+     HGL  E L +F  M      P+++TF+G
Sbjct: 304 KCGSIKDAIEVFETMPRKSLPTWNSMITSLGVHGLGQEALNLFSEMERVNVKPDAITFIG 363

Query: 439 ILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEA 488
           +L AC H   V  G   F  M   Y I P PEHY  M  L  R+  + EA
Sbjct: 364 VLCACVHIKNVKEGCAYFTRMTQHYGIAPIPEHYECMTELYARSNNLDEA 413



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 63/194 (32%), Positives = 106/194 (54%), Gaps = 8/194 (4%)

Query: 41  NVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMP 100
           +V   N ++  + + G    A ++FE+M  RNVVSWT +I GL   G + EAR++F+E+P
Sbjct: 159 DVFVQNNLIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLISCGDLQEARRIFDEIP 218

Query: 101 ERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECC------MMGEA 154
            +NVVSW +M+ G IRN +  EA ++F  M  +N+      +   ++ C       +G  
Sbjct: 219 SKNVVSWTAMINGYIRNQQPEEALELFKRMQAENIFPNEYTMVSLIKACTEMGILTLGRG 278

Query: 155 I--VLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGF 212
           I     +   E  V   T++I  Y + G +++   +F  MPRK++ +W +MI     +G 
Sbjct: 279 IHDYAIKNCIEIGVYLGTALIDMYSKCGSIKDAIEVFETMPRKSLPTWNSMITSLGVHGL 338

Query: 213 HKESLLLFIEMKGI 226
            +E+L LF EM+ +
Sbjct: 339 GQEALNLFSEMERV 352



 Score =  108 bits (270), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 99/353 (28%), Positives = 163/353 (46%), Gaps = 73/353 (20%)

Query: 18   ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPER------ 71
            I  YSK G + +A+ALF  +P RNVVS+ +M++G++QN +   A  LF++  E       
Sbjct: 2057 IDMYSKCGQLKDARALFDEIPLRNVVSWTSMITGYVQNEQADNALLLFKDFLEEETEVED 2116

Query: 72   ------------NVVSWTAMICG-------------------------LADA----GRVC 90
                        +V+S  + + G                         L DA    G+  
Sbjct: 2117 GNNVPLDSVVMVSVLSACSRVSGKGITEGVHGFVVKKGFDGSIGVGNTLMDAYAKCGQPL 2176

Query: 91   EARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMI--AGYVEC 148
             ++K+F+ M E++ +SWNSM+    ++G   EA +VF+ M     + +NA+   A  + C
Sbjct: 2177 VSKKVFDWMEEKDDISWNSMIAVYAQSGLSGEALEVFHGMVRHVGVRYNAVTLSAVLLAC 2236

Query: 149  ----------CMMGEAIVLFEEME-ERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNV 197
                      C+  + I    +M+ E NV   TS+I  YC+ G VE     F RM  KNV
Sbjct: 2237 AHAGALRAGKCIHDQVI----KMDLEYNVCVGTSIIDMYCKCGRVEMAKKTFDRMKEKNV 2292

Query: 198  VSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNL 257
             SWTAM+ G+  +G  KE+L +F +M      G   N  +  S++      G +EE  + 
Sbjct: 2293 KSWTAMVAGYGMHGRAKEALDIFYKM---VRAGVKPNYITFVSVLAACSHAGLVEEGWHW 2349

Query: 258  FDTVPVRDEIS-----WTSMIDGYLSVGQVSNAYYLFHNMPDR-DAVAWTAMI 304
            F+ +  + +I      +  M+D +   G ++ AY L   M  + D V W +++
Sbjct: 2350 FNAMKHKYDIEPGIEHYGCMVDLFGRAGCLNEAYNLIKRMKMKPDFVVWGSLL 2402



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 104/415 (25%), Positives = 171/415 (41%), Gaps = 67/415 (16%)

Query: 22  SKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMIC 81
           + RG I   KALF L   +N      + +  +++G LS  + L  ++           I 
Sbjct: 20  TPRGNIRAKKALFLLQNCKNFKHLRQIHAKIIRSG-LSNDQLLTRKL-----------IH 67

Query: 82  GLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIK-------- 133
             +  GR+  A  LF ++      +WN ++     NG   +A  ++ +M  +        
Sbjct: 68  LYSTHGRIAYAILLFYQIQNPCTFTWNLIIRANTINGLSEQALMLYKNMVCQGIAADKFT 127

Query: 134 -------------------------------NVISWNAMIAGYVECCMMGEAIVLFEEME 162
                                          +V   N +I  Y +C     A+ +FE+M 
Sbjct: 128 FPFVIKACTNFLSIDLGKVVHGSLIKYGFSGDVFVQNNLIDFYFKCGHTRFALKVFEKMR 187

Query: 163 ERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIE 222
            RNVV+WT++ISG    G+++E   +F  +P KNVVSWTAMI G+  N   +E+L LF  
Sbjct: 188 VRNVVSWTTVISGLISCGDLQEARRIFDEIPSKNVVSWTAMINGYIRNQQPEEALELFKR 247

Query: 223 MKGICDNGNNCN----VQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLS 278
           M+      N       +++C  M  G +  GR      + + + +   +  T++ID Y  
Sbjct: 248 MQAENIFPNEYTMVSLIKACTEM--GILTLGRGIHDYAIKNCIEIGVYLG-TALIDMYSK 304

Query: 279 VGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVL 338
            G + +A  +F  MP +    W +MI+ L  + L  EA  LF EM    V P   TF  +
Sbjct: 305 CGSIKDAIEVFETMPRKSLPTWNSMITSLGVHGLGQEALNLFSEMERVNVKPDAITFIGV 364

Query: 339 FGAAGATANIDLGRQIHCVLMKTESESDLILE-----NCLISMYAKCGVIDNAYN 388
             A     N+  G    C      ++   I        C+  +YA+   +D A+ 
Sbjct: 365 LCACVHIKNVKEG----CAYFTRMTQHYGIAPIPEHYECMTELYARSNNLDEAFK 415



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 71/189 (37%), Positives = 99/189 (52%), Gaps = 10/189 (5%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWT 77
           I  Y K G    A  +F+ M  RNVVS+  ++SG +  G L EARR+F+E+P +NVVSWT
Sbjct: 167 IDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLISCGDLQEARRIFDEIPSKNVVSWT 226

Query: 78  AMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRN----GELNEARKVFNSMPIK 133
           AMI G     +  EA +LF+ M   N+      +V LI+     G L   R + +   IK
Sbjct: 227 AMINGYIRNQQPEEALELFKRMQAENIFPNEYTMVSLIKACTEMGILTLGRGI-HDYAIK 285

Query: 134 NVISW-----NAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCL 188
           N I        A+I  Y +C  + +AI +FE M  +++ TW SMI+     G  +E   L
Sbjct: 286 NCIEIGVYLGTALIDMYSKCGSIKDAIEVFETMPRKSLPTWNSMITSLGVHGLGQEALNL 345

Query: 189 FRRMPRKNV 197
           F  M R NV
Sbjct: 346 FSEMERVNV 354



 Score = 89.0 bits (219), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 64/279 (22%), Positives = 119/279 (42%), Gaps = 33/279 (11%)

Query: 265 DEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMR 324
           D++    +I  Y + G+++ A  LF+ + +     W  +I     N L  +A  L+  M 
Sbjct: 58  DQLLTRKLIHLYSTHGRIAYAILLFYQIQNPCTFTWNLIIRANTINGLSEQALMLYKNMV 117

Query: 325 AHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAK----- 379
             G+     TF  +  A     +IDLG+ +H  L+K     D+ ++N LI  Y K     
Sbjct: 118 CQGIAADKFTFPFVIKACTNFLSIDLGKVVHGSLIKYGFSGDVFVQNNLIDFYFKCGHTR 177

Query: 380 --------------------------CGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGL 413
                                     CG +  A  IF  + S+++VSW +M+ G+  +  
Sbjct: 178 FALKVFEKMRVRNVVSWTTVISGLISCGDLQEARRIFDEIPSKNVVSWTAMINGYIRNQQ 237

Query: 414 ANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYV 473
             E L++F+ M      PN  T + ++ AC+  G+++ G  + +       I+ G     
Sbjct: 238 PEEALELFKRMQAENIFPNEYTMVSLIKACTEMGILTLGRGIHDYAIKNC-IEIGVYLGT 296

Query: 474 SMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACG 512
           ++I++  + G IK+A E    +P       W +++ + G
Sbjct: 297 ALIDMYSKCGSIKDAIEVFETMP-RKSLPTWNSMITSLG 334



 Score = 76.3 bits (186), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 55/196 (28%), Positives = 98/196 (50%), Gaps = 12/196 (6%)

Query: 11  VVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPE 70
           VV  T+ I+     G + EA+ +F  +P +NVVS+ AM++G+++N +  EA  LF+ M  
Sbjct: 191 VVSWTTVISGLISCGDLQEARRIFDEIPSKNVVSWTAMINGYIRNQQPEEALELFKRMQA 250

Query: 71  RNVV----SWTAMICGLADAGRVCEARKL----FEEMPERNVVSWNSMVVGLIRNGELNE 122
            N+     +  ++I    + G +   R +     +   E  V    +++    + G + +
Sbjct: 251 ENIFPNEYTMVSLIKACTEMGILTLGRGIHDYAIKNCIEIGVYLGTALIDMYSKCGSIKD 310

Query: 123 ARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNV----VTWTSMISGYCR 178
           A +VF +MP K++ +WN+MI       +  EA+ LF EME  NV    +T+  ++     
Sbjct: 311 AIEVFETMPRKSLPTWNSMITSLGVHGLGQEALNLFSEMERVNVKPDAITFIGVLCACVH 370

Query: 179 AGEVEEGYCLFRRMPR 194
              V+EG   F RM +
Sbjct: 371 IKNVKEGCAYFTRMTQ 386



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/140 (29%), Positives = 69/140 (49%), Gaps = 10/140 (7%)

Query: 15   TSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEM----PE 70
            TS I  Y K G ++ AK  F  M ++NV S+ AM++G+  +GR  EA  +F +M     +
Sbjct: 2265 TSIIDMYCKCGRVEMAKKTFDRMKEKNVKSWTAMVAGYGMHGRAKEALDIFYKMVRAGVK 2324

Query: 71   RNVVSWTAMICGLADAGRVCEARKLFEEMP-----ERNVVSWNSMVVGLIRNGELNEARK 125
             N +++ +++   + AG V E    F  M      E  +  +  MV    R G LNEA  
Sbjct: 2325 PNYITFVSVLAACSHAGLVEEGWHWFNAMKHKYDIEPGIEHYGCMVDLFGRAGCLNEAYN 2384

Query: 126  VFNSMPIK-NVISWNAMIAG 144
            +   M +K + + W +++  
Sbjct: 2385 LIKRMKMKPDFVVWGSLLGA 2404



 Score = 47.8 bits (112), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 47/197 (23%), Positives = 86/197 (43%), Gaps = 17/197 (8%)

Query: 7   PKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVV----SYNAMLSGFLQNGRLSEAR 62
           P   VV  T+ I  Y +    +EA  LF+ M   N+     +  +++    + G L+  R
Sbjct: 218 PSKNVVSWTAMINGYIRNQQPEEALELFKRMQAENIFPNEYTMVSLIKACTEMGILTLGR 277

Query: 63  RL----FEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNG 118
            +     +   E  V   TA+I   +  G + +A ++FE MP +++ +WNSM+  L  +G
Sbjct: 278 GIHDYAIKNCIEIGVYLGTALIDMYSKCGSIKDAIEVFETMPRKSLPTWNSMITSLGVHG 337

Query: 119 ELNEARKVFNSMPIKNV----ISWNAMIAGYVECCMMGEAIVLFEEMEERNVVT-----W 169
              EA  +F+ M   NV    I++  ++   V    + E    F  M +   +      +
Sbjct: 338 LGQEALNLFSEMERVNVKPDAITFIGVLCACVHIKNVKEGCAYFTRMTQHYGIAPIPEHY 397

Query: 170 TSMISGYCRAGEVEEGY 186
             M   Y R+  ++E +
Sbjct: 398 ECMTELYARSNNLDEAF 414



 Score = 47.0 bits (110), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 31/127 (24%), Positives = 63/127 (49%), Gaps = 15/127 (11%)

Query: 352 RQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHH 411
           RQIH  ++++   +D +L   LI +Y+  G I  A  +F  + +    +WN ++   + +
Sbjct: 44  RQIHAKIIRSGLSNDQLLTRKLIHLYSTHGRIAYAILLFYQIQNPCTFTWNLIIRANTIN 103

Query: 412 GLANETLKVFESMLESGTHPNSVTFLGILSACS-----------HAGLVSRGW--ELF-- 456
           GL+ + L ++++M+  G   +  TF  ++ AC+           H  L+  G+  ++F  
Sbjct: 104 GLSEQALMLYKNMVCQGIAADKFTFPFVIKACTNFLSIDLGKVVHGSLIKYGFSGDVFVQ 163

Query: 457 NAMFDVY 463
           N + D Y
Sbjct: 164 NNLIDFY 170


>gi|108712052|gb|ABF99847.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 1221

 Score =  278 bits (712), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 179/600 (29%), Positives = 293/600 (48%), Gaps = 52/600 (8%)

Query: 37  MPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVV----SWTAMICGLAD------- 85
           MP++NVV++ +++SG+ +NGR   A  +F +M E  V     +  A +   AD       
Sbjct: 1   MPRKNVVAWTSVMSGYTRNGRPEAALAMFADMVESGVAPNDFACNAALVACADLGALRAG 60

Query: 86  ----------------------------AGRVCEARKLFEEMPERNVVSWNSMVVGLIRN 117
                                        G +  A+++F+ M   +VV + S++    RN
Sbjct: 61  EQVHSLAVRAGFAGDAWIGSCLIEMYSRCGSLPAAKEVFDRMDSPDVVGYTSLISAFCRN 120

Query: 118 GELNEARKVFNSMPIKNVISWNAMIAGYVECC--MMGEAI--VLFEE--MEERNVVTWTS 171
           GE   A +    M  + +      +   +  C  ++G+ I   L ++  +  ++V + T+
Sbjct: 121 GEFELAAEALIQMLKQGLKPNEHTMTTILTACPRVLGQQIHGYLIKKIGLRSQSVYSSTA 180

Query: 172 MISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGN 231
           +I  Y R GE +    +F  +  KNVVSW +M+  +  +G  +E+L +F +M      G 
Sbjct: 181 LIDFYSRNGEFKLAKAVFDSLHCKNVVSWCSMMQLYIRDGRLEEALQVFGDM---ISEGV 237

Query: 232 NCNVQSCNSMIN--GYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLF 289
           + N  + + ++   G I  GR      +   +     +S  +++  Y   G V     + 
Sbjct: 238 DPNEFALSIVLGACGSIGLGRQLHCSAIKHDLITDIRVS-NALLSMYGRTGLVEELEAML 296

Query: 290 HNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANID 349
           + + + D V+WT  IS   QN    +A  L  +M + G  P    FS +  +    A++D
Sbjct: 297 NKIENPDLVSWTTAISANFQNGFGEKAIALLCQMHSEGFTPNGYAFSSVLSSCADVASLD 356

Query: 350 LGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFS 409
            G Q HC+ +K   +S++   N LI+MY+KCG + +A   F  M + D+ SWNS++ G +
Sbjct: 357 QGMQFHCLALKLGCDSEICTGNALINMYSKCGQMGSARLAFDVMHTHDVTSWNSLIHGHA 416

Query: 410 HHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGP 469
            HG AN+ L+VF  M  +G  P+  TFLG+L  C+H+G+V  G   F  M D Y   P P
Sbjct: 417 QHGDANKALEVFSKMRSNGIKPDDSTFLGVLMGCNHSGMVEEGELFFRLMIDQYSFTPAP 476

Query: 470 EHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLL 529
            HY  MI++LGR G+  EA   +  +PFEPD  IW  LL +C     N +I + AA RL+
Sbjct: 477 SHYACMIDMLGRNGRFDEALRMINDMPFEPDALIWKTLLASCKL-HRNLDIGKLAADRLM 535

Query: 530 ELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGD 589
           EL   ++ ++V++ NIYA  G   +  K+R  M   GV+K  GCSW+  N  +  F S D
Sbjct: 536 ELSDRDSASYVLMSNIYAMHGEWEDARKVRRRMDETGVKKDAGCSWIEINNEVHTFASRD 595


>gi|356545955|ref|XP_003541398.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g37310-like [Glycine max]
          Length = 667

 Score =  278 bits (712), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 165/595 (27%), Positives = 294/595 (49%), Gaps = 53/595 (8%)

Query: 52  FLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMV 111
            L+ G+   AR +   +   N ++ + +I   + +     ARK+F+  P RN  +WN+M+
Sbjct: 49  LLRQGKQLHARLILLSVTPDNFLA-SKLILFYSKSNHAHFARKVFDTTPHRNTFTWNAML 107

Query: 112 VGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEME--------- 162
           +G   N     A  +F S       + NA    +   C++      F   E         
Sbjct: 108 LGYSFNSMFRHALNLFGSFTFST--TPNASPDNFTISCVLKALASSFCSPELAKEVHCLI 165

Query: 163 -----ERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESL 217
                  ++    ++I+ YCR  EV     +F  M  +++V+W AMIGG++    + E  
Sbjct: 166 LRRGLYSDIFVLNALITCYCRCDEVWLARHVFDGMSERDIVTWNAMIGGYSQRRLYDECK 225

Query: 218 LLFIEM---------------------------------KGICDNGNNCNVQSCNSMING 244
            L++EM                                 + + ++G   +V   N+++  
Sbjct: 226 RLYLEMLNVSAVAPNVVTAVSVMQACGQSMDLAFGMELHRFVKESGIEIDVSLSNAVVAM 285

Query: 245 YIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMI 304
           Y + GRL+ A+ +F+ +  +DE+++ ++I GY+  G V +A  +F  + +     W A+I
Sbjct: 286 YAKCGRLDYAREMFEGMREKDEVTYGAIISGYMDYGLVDDAMGVFRGVENPGLNMWNAVI 345

Query: 305 SGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESE 364
           SG+VQN+ F     L  +M+  G+ P   T + +  +    +N+  G+++H   ++   E
Sbjct: 346 SGMVQNKQFEGVFDLVRQMQGSGLSPNAVTLASILPSFSYFSNLRGGKEVHGYAIRRGYE 405

Query: 365 SDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESM 424
            ++ +   +I  Y K G I  A  +F    SR L+ W S++  ++ HG A   L ++  M
Sbjct: 406 QNVYVSTSIIDAYGKLGCICGARWVFDLSQSRSLIIWTSIISAYAAHGDAGLALGLYAQM 465

Query: 425 LESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGK 484
           L+ G  P+ VT   +L+AC+H+GLV   W +FN+M   Y IQP  EHY  M+ +L RAGK
Sbjct: 466 LDKGIRPDPVTLTSVLTACAHSGLVDEAWNIFNSMPSKYGIQPLVEHYACMVGVLSRAGK 525

Query: 485 IKEAEEFVLRLPFEPDHRIWGALL-GACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLC 543
           + EA +F+  +P EP  ++WG LL GA  F  G+ EI + A   L E++P N   ++++ 
Sbjct: 526 LSEAVQFISEMPIEPSAKVWGPLLHGASVF--GDVEIGKFACDHLFEIEPENTGNYIIMA 583

Query: 544 NIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
           N+YA +G+  +  ++R  M + G++K+ G SW+  +GG+  F++ D    +  EI
Sbjct: 584 NLYAHAGKWEQAGEVRERMKVIGLQKIRGSSWIETSGGLLSFIAKDVSNGRSDEI 638



 Score =  105 bits (262), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 120/499 (24%), Positives = 216/499 (43%), Gaps = 65/499 (13%)

Query: 30  AKALFQLMPQRNVVS----YNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLAD 85
           AK +  L+ +R + S     NA+++ + +   +  AR +F+ M ER++V+W AMI G + 
Sbjct: 158 AKEVHCLILRRGLYSDIFVLNALITCYCRCDEVWLARHVFDGMSERDIVTWNAMIGGYSQ 217

Query: 86  AGRVCEARKLFEEM-----PERNVVSWNSMVVGLIRNGELN---EARKVFNSMPIKNVIS 137
                E ++L+ EM        NVV+  S++    ++ +L    E  +      I+  +S
Sbjct: 218 RRLYDECKRLYLEMLNVSAVAPNVVTAVSVMQACGQSMDLAFGMELHRFVKESGIEIDVS 277

Query: 138 W-NAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKN 196
             NA++A Y +C  +  A  +FE M E++ VT+ ++ISGY   G V++   +FR +    
Sbjct: 278 LSNAVVAMYAKCGRLDYAREMFEGMREKDEVTYGAIISGYMDYGLVDDAMGVFRGVENPG 337

Query: 197 VVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQN 256
           +  W A+I G   N   +    L  +M+G   +G + N  +  S++  +  F  L   + 
Sbjct: 338 LNMWNAVISGMVQNKQFEGVFDLVRQMQG---SGLSPNAVTLASILPSFSYFSNLRGGKE 394

Query: 257 LFDTVPVR----DEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNEL 312
           +      R    +    TS+ID Y  +G +  A ++F     R  + WT++IS    +  
Sbjct: 395 VHGYAIRRGYEQNVYVSTSIIDAYGKLGCICGARWVFDLSQSRSLIIWTSIISAYAAHGD 454

Query: 313 FVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENC 372
              A  L+ +M   G+ P   T + +  A                               
Sbjct: 455 AGLALGLYAQMLDKGIRPDPVTLTSVLTAC------------------------------ 484

Query: 373 LISMYAKCGVIDNAYNIFSNMVSRDLVS-----WNSMVMGFSHHGLANETLKVFESMLES 427
                A  G++D A+NIF++M S+  +      +  MV   S  G  +E ++    M   
Sbjct: 485 -----AHSGLVDEAWNIFNSMPSKYGIQPLVEHYACMVGVLSRAGKLSEAVQFISEM--- 536

Query: 428 GTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKE 487
              P++  +  +L   S  G V  G    + +F++     G  +Y+ M NL   AGK ++
Sbjct: 537 PIEPSAKVWGPLLHGASVFGDVEIGKFACDHLFEIEPENTG--NYIIMANLYAHAGKWEQ 594

Query: 488 AEEFVLRLPFEPDHRIWGA 506
           A E   R+      +I G+
Sbjct: 595 AGEVRERMKVIGLQKIRGS 613



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 92/352 (26%), Positives = 171/352 (48%), Gaps = 35/352 (9%)

Query: 14  LTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEM----- 68
           L + IT Y +   +  A+ +F  M +R++V++NAM+ G+ Q     E +RL+ EM     
Sbjct: 177 LNALITCYCRCDEVWLARHVFDGMSERDIVTWNAMIGGYSQRRLYDECKRLYLEMLNVSA 236

Query: 69  PERNVVSWTAMI--CGLA-DAGRVCEARKLFEEMP-ERNVVSWNSMVVGLIRNGELNEAR 124
              NVV+  +++  CG + D     E  +  +E   E +V   N++V    + G L+ AR
Sbjct: 237 VAPNVVTAVSVMQACGQSMDLAFGMELHRFVKESGIEIDVSLSNAVVAMYAKCGRLDYAR 296

Query: 125 KVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEE 184
           ++F  M  K+ +++ A+I+GY++  ++ +A+ +F  +E   +  W ++ISG  +  + E 
Sbjct: 297 EMFEGMREKDEVTYGAIISGYMDYGLVDDAMGVFRGVENPGLNMWNAVISGMVQNKQFEG 356

Query: 185 GYCLFRRMP----RKNVVSWTAMIGGFAWNGFHKESLLLFIEMKG-------ICDNGNNC 233
            + L R+M       N V+  +++  F++          F  ++G           G   
Sbjct: 357 VFDLVRQMQGSGLSPNAVTLASILPSFSY----------FSNLRGGKEVHGYAIRRGYEQ 406

Query: 234 NVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMP 293
           NV    S+I+ Y + G +  A+ +FD    R  I WTS+I  Y + G    A  L+  M 
Sbjct: 407 NVYVSTSIIDAYGKLGCICGARWVFDLSQSRSLIIWTSIISAYAAHGDAGLALGLYAQML 466

Query: 294 DR----DAVAWTAMISGLVQNELFVEATYLFMEMRA-HGVPPLNATFSVLFG 340
           D+    D V  T++++    + L  EA  +F  M + +G+ PL   ++ + G
Sbjct: 467 DKGIRPDPVTLTSVLTACAHSGLVDEAWNIFNSMPSKYGIQPLVEHYACMVG 518



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 64/279 (22%), Positives = 123/279 (44%), Gaps = 17/279 (6%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWT 77
           +  Y+K G +D A+ +F+ M +++ V+Y A++SG++  G + +A  +F  +    +  W 
Sbjct: 283 VAMYAKCGRLDYAREMFEGMREKDEVTYGAIISGYMDYGLVDDAMGVFRGVENPGLNMWN 342

Query: 78  AMICGLADAGRVCEARKLFEEMP----ERNVVSWNSMVVGLIRNGELNEARKVFNSMPIK 133
           A+I G+    +      L  +M       N V+  S++        L   ++V +   I+
Sbjct: 343 AVISGMVQNKQFEGVFDLVRQMQGSGLSPNAVTLASILPSFSYFSNLRGGKEV-HGYAIR 401

Query: 134 -----NVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCL 188
                NV    ++I  Y +   +  A  +F+  + R+++ WTS+IS Y   G+      L
Sbjct: 402 RGYEQNVYVSTSIIDAYGKLGCICGARWVFDLSQSRSLIIWTSIISAYAAHGDAGLALGL 461

Query: 189 FRRMPRKNV----VSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMING 244
           + +M  K +    V+ T+++   A +G   E+  +F  M      G    V+    M+  
Sbjct: 462 YAQMLDKGIRPDPVTLTSVLTACAHSGLVDEAWNIFNSMPS--KYGIQPLVEHYACMVGV 519

Query: 245 YIRFGRLEEAQNLFDTVPVRDEIS-WTSMIDGYLSVGQV 282
             R G+L EA      +P+      W  ++ G    G V
Sbjct: 520 LSRAGKLSEAVQFISEMPIEPSAKVWGPLLHGASVFGDV 558



 Score = 41.6 bits (96), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 34/102 (33%), Positives = 48/102 (47%), Gaps = 14/102 (13%)

Query: 12  VHLTSSITKYSKRGFIDEAKALFQLMPQRN-----VVSYNAMLSGFLQNGRLSEARRLFE 66
           V LTS +T  +  G +DEA  +F  MP +      V  Y  M+    + G+LSEA +   
Sbjct: 475 VTLTSVLTACAHSGLVDEAWNIFNSMPSKYGIQPLVEHYACMVGVLSRAGKLSEAVQFIS 534

Query: 67  EMP-ERNVVSWTAMICGLADAGRV------CEARKLFEEMPE 101
           EMP E +   W  ++ G +  G V      C+   LFE  PE
Sbjct: 535 EMPIEPSAKVWGPLLHGASVFGDVEIGKFACD--HLFEIEPE 574


>gi|449492963|ref|XP_004159154.1| PREDICTED: uncharacterized protein LOC101226880 [Cucumis sativus]
          Length = 1725

 Score =  278 bits (712), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 172/519 (33%), Positives = 272/519 (52%), Gaps = 29/519 (5%)

Query: 95   LFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECC----- 149
             ++ + + NV SWNS++  L R G+  EA + F+S+    +I   +     ++ C     
Sbjct: 1098 FYKYVDKSNVHSWNSVIADLARGGDSVEALRAFSSLRKLGLIPTRSSFPCTIKSCSALCD 1157

Query: 150  -----MMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMI 204
                 M  +   +F    E ++   +++I  Y + G++++   LF  +P +NVVSWT+MI
Sbjct: 1158 LVSGRMSHQQAFVFGF--ETDLFVSSALIDMYSKCGQLKDARALFDEIPLRNVVSWTSMI 1215

Query: 205  GGFAWNGFHKESLLLF---IEMKGICDNGNNC--------NVQSCNSMINGYIRFGRLEE 253
             G+  N     +LLLF   +E +   ++GNN         +V S  S ++G    G  E 
Sbjct: 1216 TGYVQNEQADNALLLFKDFLEEETEVEDGNNVPLDSVVMVSVLSACSRVSGK---GITEG 1272

Query: 254  AQNLFDTVPVRDEIS-WTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNEL 312
                         I    +++D Y   GQ   +  +F  M ++D ++W +MI+   Q+ L
Sbjct: 1273 VHGFVVKKGFDGSIGVGNTLMDAYAKCGQPLVSKKVFDWMEEKDDISWNSMIAVYAQSGL 1332

Query: 313  FVEATYLFMEMRAH-GVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILEN 371
              EA  +F  M  H GV     T S +  A      +  G+ IH  ++K + E ++ +  
Sbjct: 1333 SGEALEVFHGMVRHVGVRYNAVTLSAVLLACAHAGALRAGKCIHDQVIKMDLEYNVCVGT 1392

Query: 372  CLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHP 431
             +I MY KCG ++ A   F  M  +++ SW +MV G+  HG A E L +F  M+ +G  P
Sbjct: 1393 SIIDMYCKCGRVEMAKKTFDRMKEKNVKSWTAMVAGYGMHGRAKEALDIFYKMVRAGVKP 1452

Query: 432  NSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEF 491
            N +TF+ +L+ACSHAGLV  GW  FNAM   Y I+PG EHY  M++L GRAG + EA   
Sbjct: 1453 NYITFVSVLAACSHAGLVEEGWHWFNAMKHKYDIEPGIEHYGCMVDLFGRAGCLNEAYNL 1512

Query: 492  VLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGR 551
            + R+  +PD  +WG+LLGAC     N ++ E AA++L ELDP N   +V+L N+YA +GR
Sbjct: 1513 IKRMKMKPDFVVWGSLLGACRI-HKNVDLGEIAAQKLFELDPDNCGYYVLLSNLYADAGR 1571

Query: 552  HVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDK 590
              +  ++RM M  + + K PG S +   G + +FL GDK
Sbjct: 1572 WADVERMRMLMKNRQLVKPPGFSLVELKGRVHVFLVGDK 1610



 Score =  178 bits (452), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 109/349 (31%), Positives = 164/349 (46%), Gaps = 32/349 (9%)

Query: 172 MISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEM--KGI--- 226
           +I  Y   G +     LF ++      +W  +I     NG  +++L+L+  M  +GI   
Sbjct: 65  LIHLYSTHGRIAYAILLFYQIQNPCTFTWNLIIRANTINGLSEQALMLYKNMVCQGIAAD 124

Query: 227 ----------CDN-----------------GNNCNVQSCNSMINGYIRFGRLEEAQNLFD 259
                     C N                 G + +V   N++I+ Y + G    A  +F+
Sbjct: 125 KFTFPFVIKACTNFLSIDLGKVVHGSLIKYGFSGDVFVQNNLIDFYFKCGHTRFALKVFE 184

Query: 260 TVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYL 319
            + VR+ +SWT++I G +S G +  A  +F  +P ++ V+WTAMI+G ++N+   EA  L
Sbjct: 185 KMRVRNVVSWTTVISGLISCGDLQEARRIFDEIPSKNVVSWTAMINGYIRNQQPEEALEL 244

Query: 320 FMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAK 379
           F  M+A  + P   T   L  A      + LGR IH   +K   E  + L   LI MY+K
Sbjct: 245 FKRMQAENIFPNEYTMVSLIKACTEMGILTLGRGIHDYAIKNCIEIGVYLGTALIDMYSK 304

Query: 380 CGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGI 439
           CG I +A  +F  M  + L +WNSM+     HGL  E L +F  M      P+++TF+G+
Sbjct: 305 CGSIKDAIEVFETMPRKSLPTWNSMITSLGVHGLGQEALNLFSEMERVNVKPDAITFIGV 364

Query: 440 LSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEA 488
           L AC H   V  G   F  M   Y I P PEHY  M  L  R+  + EA
Sbjct: 365 LCACVHIKNVKEGCAYFTRMTQHYGIAPIPEHYECMTELYARSNNLDEA 413



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 63/194 (32%), Positives = 106/194 (54%), Gaps = 8/194 (4%)

Query: 41  NVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMP 100
           +V   N ++  + + G    A ++FE+M  RNVVSWT +I GL   G + EAR++F+E+P
Sbjct: 159 DVFVQNNLIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLISCGDLQEARRIFDEIP 218

Query: 101 ERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECC------MMGEA 154
            +NVVSW +M+ G IRN +  EA ++F  M  +N+      +   ++ C       +G  
Sbjct: 219 SKNVVSWTAMINGYIRNQQPEEALELFKRMQAENIFPNEYTMVSLIKACTEMGILTLGRG 278

Query: 155 I--VLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGF 212
           I     +   E  V   T++I  Y + G +++   +F  MPRK++ +W +MI     +G 
Sbjct: 279 IHDYAIKNCIEIGVYLGTALIDMYSKCGSIKDAIEVFETMPRKSLPTWNSMITSLGVHGL 338

Query: 213 HKESLLLFIEMKGI 226
            +E+L LF EM+ +
Sbjct: 339 GQEALNLFSEMERV 352



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 99/353 (28%), Positives = 163/353 (46%), Gaps = 73/353 (20%)

Query: 18   ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPER------ 71
            I  YSK G + +A+ALF  +P RNVVS+ +M++G++QN +   A  LF++  E       
Sbjct: 1184 IDMYSKCGQLKDARALFDEIPLRNVVSWTSMITGYVQNEQADNALLLFKDFLEEETEVED 1243

Query: 72   ------------NVVSWTAMICG-------------------------LADA----GRVC 90
                        +V+S  + + G                         L DA    G+  
Sbjct: 1244 GNNVPLDSVVMVSVLSACSRVSGKGITEGVHGFVVKKGFDGSIGVGNTLMDAYAKCGQPL 1303

Query: 91   EARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMI--AGYVEC 148
             ++K+F+ M E++ +SWNSM+    ++G   EA +VF+ M     + +NA+   A  + C
Sbjct: 1304 VSKKVFDWMEEKDDISWNSMIAVYAQSGLSGEALEVFHGMVRHVGVRYNAVTLSAVLLAC 1363

Query: 149  ----------CMMGEAIVLFEEME-ERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNV 197
                      C+  + I    +M+ E NV   TS+I  YC+ G VE     F RM  KNV
Sbjct: 1364 AHAGALRAGKCIHDQVI----KMDLEYNVCVGTSIIDMYCKCGRVEMAKKTFDRMKEKNV 1419

Query: 198  VSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNL 257
             SWTAM+ G+  +G  KE+L +F +M      G   N  +  S++      G +EE  + 
Sbjct: 1420 KSWTAMVAGYGMHGRAKEALDIFYKM---VRAGVKPNYITFVSVLAACSHAGLVEEGWHW 1476

Query: 258  FDTVPVRDEIS-----WTSMIDGYLSVGQVSNAYYLFHNMPDR-DAVAWTAMI 304
            F+ +  + +I      +  M+D +   G ++ AY L   M  + D V W +++
Sbjct: 1477 FNAMKHKYDIEPGIEHYGCMVDLFGRAGCLNEAYNLIKRMKMKPDFVVWGSLL 1529



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 104/415 (25%), Positives = 171/415 (41%), Gaps = 67/415 (16%)

Query: 22  SKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMIC 81
           + RG I   KALF L   +N      + +  +++G LS  + L  ++           I 
Sbjct: 20  TPRGNIRAKKALFLLQNCKNFKHLRQIHAKIIRSG-LSNDQLLTRKL-----------IH 67

Query: 82  GLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIK-------- 133
             +  GR+  A  LF ++      +WN ++     NG   +A  ++ +M  +        
Sbjct: 68  LYSTHGRIAYAILLFYQIQNPCTFTWNLIIRANTINGLSEQALMLYKNMVCQGIAADKFT 127

Query: 134 -------------------------------NVISWNAMIAGYVECCMMGEAIVLFEEME 162
                                          +V   N +I  Y +C     A+ +FE+M 
Sbjct: 128 FPFVIKACTNFLSIDLGKVVHGSLIKYGFSGDVFVQNNLIDFYFKCGHTRFALKVFEKMR 187

Query: 163 ERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIE 222
            RNVV+WT++ISG    G+++E   +F  +P KNVVSWTAMI G+  N   +E+L LF  
Sbjct: 188 VRNVVSWTTVISGLISCGDLQEARRIFDEIPSKNVVSWTAMINGYIRNQQPEEALELFKR 247

Query: 223 MKGICDNGNNCN----VQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLS 278
           M+      N       +++C  M  G +  GR      + + + +   +  T++ID Y  
Sbjct: 248 MQAENIFPNEYTMVSLIKACTEM--GILTLGRGIHDYAIKNCIEIGVYLG-TALIDMYSK 304

Query: 279 VGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVL 338
            G + +A  +F  MP +    W +MI+ L  + L  EA  LF EM    V P   TF  +
Sbjct: 305 CGSIKDAIEVFETMPRKSLPTWNSMITSLGVHGLGQEALNLFSEMERVNVKPDAITFIGV 364

Query: 339 FGAAGATANIDLGRQIHCVLMKTESESDLILE-----NCLISMYAKCGVIDNAYN 388
             A     N+  G    C      ++   I        C+  +YA+   +D A+ 
Sbjct: 365 LCACVHIKNVKEG----CAYFTRMTQHYGIAPIPEHYECMTELYARSNNLDEAFK 415



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 71/189 (37%), Positives = 99/189 (52%), Gaps = 10/189 (5%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWT 77
           I  Y K G    A  +F+ M  RNVVS+  ++SG +  G L EARR+F+E+P +NVVSWT
Sbjct: 167 IDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLISCGDLQEARRIFDEIPSKNVVSWT 226

Query: 78  AMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRN----GELNEARKVFNSMPIK 133
           AMI G     +  EA +LF+ M   N+      +V LI+     G L   R + +   IK
Sbjct: 227 AMINGYIRNQQPEEALELFKRMQAENIFPNEYTMVSLIKACTEMGILTLGRGI-HDYAIK 285

Query: 134 NVISW-----NAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCL 188
           N I        A+I  Y +C  + +AI +FE M  +++ TW SMI+     G  +E   L
Sbjct: 286 NCIEIGVYLGTALIDMYSKCGSIKDAIEVFETMPRKSLPTWNSMITSLGVHGLGQEALNL 345

Query: 189 FRRMPRKNV 197
           F  M R NV
Sbjct: 346 FSEMERVNV 354



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 64/279 (22%), Positives = 119/279 (42%), Gaps = 33/279 (11%)

Query: 265 DEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMR 324
           D++    +I  Y + G+++ A  LF+ + +     W  +I     N L  +A  L+  M 
Sbjct: 58  DQLLTRKLIHLYSTHGRIAYAILLFYQIQNPCTFTWNLIIRANTINGLSEQALMLYKNMV 117

Query: 325 AHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAK----- 379
             G+     TF  +  A     +IDLG+ +H  L+K     D+ ++N LI  Y K     
Sbjct: 118 CQGIAADKFTFPFVIKACTNFLSIDLGKVVHGSLIKYGFSGDVFVQNNLIDFYFKCGHTR 177

Query: 380 --------------------------CGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGL 413
                                     CG +  A  IF  + S+++VSW +M+ G+  +  
Sbjct: 178 FALKVFEKMRVRNVVSWTTVISGLISCGDLQEARRIFDEIPSKNVVSWTAMINGYIRNQQ 237

Query: 414 ANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYV 473
             E L++F+ M      PN  T + ++ AC+  G+++ G  + +       I+ G     
Sbjct: 238 PEEALELFKRMQAENIFPNEYTMVSLIKACTEMGILTLGRGIHDYAIK-NCIEIGVYLGT 296

Query: 474 SMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACG 512
           ++I++  + G IK+A E    +P       W +++ + G
Sbjct: 297 ALIDMYSKCGSIKDAIEVFETMP-RKSLPTWNSMITSLG 334



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 55/196 (28%), Positives = 98/196 (50%), Gaps = 12/196 (6%)

Query: 11  VVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPE 70
           VV  T+ I+     G + EA+ +F  +P +NVVS+ AM++G+++N +  EA  LF+ M  
Sbjct: 191 VVSWTTVISGLISCGDLQEARRIFDEIPSKNVVSWTAMINGYIRNQQPEEALELFKRMQA 250

Query: 71  RNVV----SWTAMICGLADAGRVCEARKL----FEEMPERNVVSWNSMVVGLIRNGELNE 122
            N+     +  ++I    + G +   R +     +   E  V    +++    + G + +
Sbjct: 251 ENIFPNEYTMVSLIKACTEMGILTLGRGIHDYAIKNCIEIGVYLGTALIDMYSKCGSIKD 310

Query: 123 ARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNV----VTWTSMISGYCR 178
           A +VF +MP K++ +WN+MI       +  EA+ LF EME  NV    +T+  ++     
Sbjct: 311 AIEVFETMPRKSLPTWNSMITSLGVHGLGQEALNLFSEMERVNVKPDAITFIGVLCACVH 370

Query: 179 AGEVEEGYCLFRRMPR 194
              V+EG   F RM +
Sbjct: 371 IKNVKEGCAYFTRMTQ 386



 Score = 55.5 bits (132), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 41/140 (29%), Positives = 69/140 (49%), Gaps = 10/140 (7%)

Query: 15   TSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEM----PE 70
            TS I  Y K G ++ AK  F  M ++NV S+ AM++G+  +GR  EA  +F +M     +
Sbjct: 1392 TSIIDMYCKCGRVEMAKKTFDRMKEKNVKSWTAMVAGYGMHGRAKEALDIFYKMVRAGVK 1451

Query: 71   RNVVSWTAMICGLADAGRVCEARKLFEEMP-----ERNVVSWNSMVVGLIRNGELNEARK 125
             N +++ +++   + AG V E    F  M      E  +  +  MV    R G LNEA  
Sbjct: 1452 PNYITFVSVLAACSHAGLVEEGWHWFNAMKHKYDIEPGIEHYGCMVDLFGRAGCLNEAYN 1511

Query: 126  VFNSMPIK-NVISWNAMIAG 144
            +   M +K + + W +++  
Sbjct: 1512 LIKRMKMKPDFVVWGSLLGA 1531



 Score = 48.5 bits (114), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 47/197 (23%), Positives = 86/197 (43%), Gaps = 17/197 (8%)

Query: 7   PKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVV----SYNAMLSGFLQNGRLSEAR 62
           P   VV  T+ I  Y +    +EA  LF+ M   N+     +  +++    + G L+  R
Sbjct: 218 PSKNVVSWTAMINGYIRNQQPEEALELFKRMQAENIFPNEYTMVSLIKACTEMGILTLGR 277

Query: 63  RL----FEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNG 118
            +     +   E  V   TA+I   +  G + +A ++FE MP +++ +WNSM+  L  +G
Sbjct: 278 GIHDYAIKNCIEIGVYLGTALIDMYSKCGSIKDAIEVFETMPRKSLPTWNSMITSLGVHG 337

Query: 119 ELNEARKVFNSMPIKNV----ISWNAMIAGYVECCMMGEAIVLFEEMEERNVVT-----W 169
              EA  +F+ M   NV    I++  ++   V    + E    F  M +   +      +
Sbjct: 338 LGQEALNLFSEMERVNVKPDAITFIGVLCACVHIKNVKEGCAYFTRMTQHYGIAPIPEHY 397

Query: 170 TSMISGYCRAGEVEEGY 186
             M   Y R+  ++E +
Sbjct: 398 ECMTELYARSNNLDEAF 414



 Score = 47.0 bits (110), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 31/127 (24%), Positives = 63/127 (49%), Gaps = 15/127 (11%)

Query: 352 RQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHH 411
           RQIH  ++++   +D +L   LI +Y+  G I  A  +F  + +    +WN ++   + +
Sbjct: 44  RQIHAKIIRSGLSNDQLLTRKLIHLYSTHGRIAYAILLFYQIQNPCTFTWNLIIRANTIN 103

Query: 412 GLANETLKVFESMLESGTHPNSVTFLGILSACS-----------HAGLVSRGW--ELF-- 456
           GL+ + L ++++M+  G   +  TF  ++ AC+           H  L+  G+  ++F  
Sbjct: 104 GLSEQALMLYKNMVCQGIAADKFTFPFVIKACTNFLSIDLGKVVHGSLIKYGFSGDVFVQ 163

Query: 457 NAMFDVY 463
           N + D Y
Sbjct: 164 NNLIDFY 170


>gi|359497772|ref|XP_003635637.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like, partial [Vitis vinifera]
          Length = 629

 Score =  278 bits (712), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 169/538 (31%), Positives = 279/538 (51%), Gaps = 50/538 (9%)

Query: 92  ARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMM 151
           A K+F++MPERN+V+W  M+    + G   +A  +F  M +   +      +  +  C  
Sbjct: 4   AYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTE 63

Query: 152 GEAIVLFEEMEER--------NVVTWTSMISGYCRA---GEVEEGYCLFRRMPRKNVVSW 200
              + L +++  R        +V    S++  Y +    G V++   +F +MP  NV+SW
Sbjct: 64  LGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSW 123

Query: 201 TAMIGGFAWNG-FHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGR------LEE 253
           TA+I  +A +G   KE++ LF +M                  I+G+IR         L+ 
Sbjct: 124 TAIITAYAQSGECDKEAIELFCKM------------------ISGHIRPNHFSFSSVLKA 165

Query: 254 AQNLFDTVPVRDEISWT-------------SMIDGYLSVGQVSNAYYLFHNMPDRDAVAW 300
             NL D        S+              S+I  Y   G++ +A   F  + +++ V++
Sbjct: 166 CGNLSDPYTGEQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSY 225

Query: 301 TAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMK 360
            A++ G  +N    EA  LF E+   G+     TF+ L   A +   +  G QIH  L+K
Sbjct: 226 NAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLK 285

Query: 361 TESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKV 420
              +S+  + N LISMY++CG I+ A+ +F+ M  R+++SW SM+ GF+ HG A   L++
Sbjct: 286 GGYKSNQCICNALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEM 345

Query: 421 FESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLG 480
           F  MLE+GT PN +T++ +LSACSH G++S G + FN+M+  + I P  EHY  M++LLG
Sbjct: 346 FHKMLETGTKPNEITYVAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLG 405

Query: 481 RAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHV 540
           R+G + EA EF+  +P   D  +W  LLGAC    GN E+  HAA+ +LE +P +  A++
Sbjct: 406 RSGLLVEAMEFINSMPLMADALVWRTLLGACRV-HGNTELGRHAAEMILEQEPDDPAAYI 464

Query: 541 VLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
           +L N++A++G+  +  K+R  M  + + K  GCSW+     +  F  G+    Q  +I
Sbjct: 465 LLSNLHASAGQWKDVVKIRKSMKERNLIKEAGCSWIEVENRVHRFHVGETSHPQAWQI 522



 Score =  118 bits (296), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 110/440 (25%), Positives = 203/440 (46%), Gaps = 38/440 (8%)

Query: 1   MSERNHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVV----SYNAMLSGFLQNG 56
           M ERN     +V  T  IT++++ G   +A  LF  M     V    +Y+++LS   + G
Sbjct: 11  MPERN-----LVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTELG 65

Query: 57  RLSEARRLFEEMPERNVVSWTAMICGLAD-------AGRVCEARKLFEEMPERNVVSWNS 109
            L+  ++L   +    +     + C L D        G V ++RK+FE+MPE NV+SW +
Sbjct: 66  LLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTA 125

Query: 110 MVVGLIRNGELN-EARKVFNSMPIKNVISWNAMIAGYVECC------MMGEAIVLFE--- 159
           ++    ++GE + EA ++F  M   ++   +   +  ++ C        GE +  +    
Sbjct: 126 IITAYAQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAVKL 185

Query: 160 EMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLL 219
            +   N V   S+IS Y R+G +E+    F  +  KN+VS+ A++ G+A N   +E+ LL
Sbjct: 186 GIASVNCVG-NSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLL 244

Query: 220 FIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQN----LFDTVPVRDEISWTSMIDG 275
           F E   I D G   +  +  S+++G    G + + +     L       ++    ++I  
Sbjct: 245 FNE---IADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISM 301

Query: 276 YLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATF 335
           Y   G +  A+ +F+ M DR+ ++WT+MI+G  ++     A  +F +M   G  P   T+
Sbjct: 302 YSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITY 361

Query: 336 SVLFGAAGATANIDLGRQIHCVLMKTESESDLILEN--CLISMYAKCGVIDNAYNIFSNM 393
             +  A      I  G Q H   M  E      +E+  C++ +  + G++  A    ++M
Sbjct: 362 VAVLSACSHVGMISEG-QKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSM 420

Query: 394 -VSRDLVSWNSMVMGFSHHG 412
            +  D + W +++     HG
Sbjct: 421 PLMADALVWRTLLGACRVHG 440



 Score = 58.9 bits (141), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 46/153 (30%), Positives = 81/153 (52%), Gaps = 16/153 (10%)

Query: 46  NAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPER--- 102
           NA++S + + G +  A ++F EM +RNV+SWT+MI G A  G    A ++F +M E    
Sbjct: 296 NALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTK 355

Query: 103 -NVVSWNSMVVGLIRNGELNEARKVFNSMPIKN-VISWNAMIAGYVECCMMGEAIVLFEE 160
            N +++ +++      G ++E +K FNSM  ++ ++      A  V+  ++G + +L E 
Sbjct: 356 PNEITYVAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVD--LLGRSGLLVEA 413

Query: 161 MEERN-------VVTWTSMISGYCRA-GEVEEG 185
           ME  N        + W +++ G CR  G  E G
Sbjct: 414 MEFINSMPLMADALVWRTLL-GACRVHGNTELG 445


>gi|115463499|ref|NP_001055349.1| Os05g0370000 [Oryza sativa Japonica Group]
 gi|54287484|gb|AAV31228.1| unknown protein [Oryza sativa Japonica Group]
 gi|113578900|dbj|BAF17263.1| Os05g0370000 [Oryza sativa Japonica Group]
          Length = 664

 Score =  278 bits (712), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 174/513 (33%), Positives = 262/513 (51%), Gaps = 24/513 (4%)

Query: 102 RNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEM 161
           R+    +S++   +R G   +AR V + MP + V+ W+A+IA +        A  L E M
Sbjct: 53  RDAFVASSLLHAYLRFGATADARSVLDGMPHRTVVGWSALIAAHASHGDAEGAWGLLERM 112

Query: 162 E----ERNVVTWTSMISGYCRAGEVEEGYCLFRRM------PRKNVVSWTAMIGGFAWNG 211
                E NV+TW  ++SG  R+G   +      RM      P    VS      G   + 
Sbjct: 113 RSDGVEPNVITWNGLVSGLNRSGRARDAVLALVRMHGEGFLPDATGVSCALSAVGDVGDV 172

Query: 212 FHKESLLLFIEMKGICDNGNNCNVQSC--NSMINGYIRFGRLEEAQNLFDTVPVRDEISW 269
              E L  ++   G       C + +C   ++I+ Y + GR +E   +FD     D  S 
Sbjct: 173 AVGEQLHGYVVKAG-------CRLDACVATALIDMYGKCGRADEIVRVFDESSHMDVASC 225

Query: 270 TSMIDGYLSVGQVSNAYYLFHNMPDR----DAVAWTAMISGLVQNELFVEATYLFMEMRA 325
            +++ G     QVS A  LF     R    + V+WT++++  VQN   +EA  LF EM++
Sbjct: 226 NALVAGLSRNAQVSEALRLFREFVGRGIELNVVSWTSIVACCVQNGRDLEAVDLFREMQS 285

Query: 326 HGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDN 385
            G+ P + T   +  A    A +  GR  HC  ++     D+ + + L+ MYAKCG + +
Sbjct: 286 EGIEPNSVTIPCVLPAFANIAALMHGRSAHCFSLRKGFHHDIYVGSALVDMYAKCGRVRD 345

Query: 386 AYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSH 445
           A  IF  M  R++VSWN+M+ G++ HG A   +++F SM  S   P+ VTF  +L ACS 
Sbjct: 346 ARMIFEAMPYRNVVSWNAMIGGYAMHGEAENAVRLFRSMQSSKEKPDLVTFTCVLGACSQ 405

Query: 446 AGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWG 505
           AG    G   FN M   + I P  EHY  M+ LLGRAGK+ +A + + ++PFEPD  IWG
Sbjct: 406 AGWTEEGRSYFNEMQHKHGISPRMEHYACMVTLLGRAGKLDDAYDIINQMPFEPDGCIWG 465

Query: 506 ALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLK 565
           +LLG+C    GN  +AE AA+ L +L+P NA  +V+L NIYA+       ++LR  M   
Sbjct: 466 SLLGSCRV-HGNVVLAEVAAENLFQLEPENAGNYVLLSNIYASKKMWDGVNRLRDMMKTV 524

Query: 566 GVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
           G++K  GCSW+     + M L+GD     +A I
Sbjct: 525 GLKKEKGCSWIEIKNKVHMLLAGDSSHPMMAAI 557



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 109/459 (23%), Positives = 183/459 (39%), Gaps = 120/459 (26%)

Query: 39  QRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEE 98
            R+    +++L  +L+ G  ++AR + + MP R VV W+A+I   A  G    A  L E 
Sbjct: 52  SRDAFVASSLLHAYLRFGATADARSVLDGMPHRTVVGWSALIAAHASHGDAEGAWGLLER 111

Query: 99  MP----ERNVVSWNSMVVGLIRNGELNEARKVFNSM------PIKNVISW---------- 138
           M     E NV++WN +V GL R+G   +A      M      P    +S           
Sbjct: 112 MRSDGVEPNVITWNGLVSGLNRSGRARDAVLALVRMHGEGFLPDATGVSCALSAVGDVGD 171

Query: 139 -----------------------NAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISG 175
                                   A+I  Y +C    E + +F+E    +V +  ++++G
Sbjct: 172 VAVGEQLHGYVVKAGCRLDACVATALIDMYGKCGRADEIVRVFDESSHMDVASCNALVAG 231

Query: 176 YCRAGEVEEGYCLFR----RMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMK--GICDN 229
             R  +V E   LFR    R    NVVSWT+++     NG   E++ LF EM+  GI  N
Sbjct: 232 LSRNAQVSEALRLFREFVGRGIELNVVSWTSIVACCVQNGRDLEAVDLFREMQSEGIEPN 291

Query: 230 ------------------------------GNNCNVQSCNSMINGYIRFGRLEEAQNLFD 259
                                         G + ++   +++++ Y + GR+ +A+ +F+
Sbjct: 292 SVTIPCVLPAFANIAALMHGRSAHCFSLRKGFHHDIYVGSALVDMYAKCGRVRDARMIFE 351

Query: 260 TVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDR----DAVAWTAMISGLVQNELFVE 315
            +P R+ +SW +MI GY   G+  NA  LF +M       D V +T ++    Q     E
Sbjct: 352 AMPYRNVVSWNAMIGGYAMHGEAENAVRLFRSMQSSKEKPDLVTFTCVLGACSQAGWTEE 411

Query: 316 ATYLFMEMR-AHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLI 374
               F EM+  HG+ P    ++                                   C++
Sbjct: 412 GRSYFNEMQHKHGISPRMEHYA-----------------------------------CMV 436

Query: 375 SMYAKCGVIDNAYNIFSNM-VSRDLVSWNSMVMGFSHHG 412
           ++  + G +D+AY+I + M    D   W S++     HG
Sbjct: 437 TLLGRAGKLDDAYDIINQMPFEPDGCIWGSLLGSCRVHG 475



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 83/281 (29%), Positives = 138/281 (49%), Gaps = 29/281 (10%)

Query: 15  TSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPER--- 71
           T+ I  Y K G  DE   +F      +V S NA+++G  +N ++SEA RLF E   R   
Sbjct: 195 TALIDMYGKCGRADEIVRVFDESSHMDVASCNALVAGLSRNAQVSEALRLFREFVGRGIE 254

Query: 72  -NVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLI-------------RN 117
            NVVSWT+++      GR  EA  LF EM    +   NS+ +  +             R+
Sbjct: 255 LNVVSWTSIVACCVQNGRDLEAVDLFREMQSEGIEP-NSVTIPCVLPAFANIAALMHGRS 313

Query: 118 GELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYC 177
                 RK F+     ++   +A++  Y +C  + +A ++FE M  RNVV+W +MI GY 
Sbjct: 314 AHCFSLRKGFH----HDIYVGSALVDMYAKCGRVRDARMIFEAMPYRNVVSWNAMIGGYA 369

Query: 178 RAGEVEEGYCLFRRMP----RKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNC 233
             GE E    LFR M     + ++V++T ++G  +  G+ +E    F EM+    +G + 
Sbjct: 370 MHGEAENAVRLFRSMQSSKEKPDLVTFTCVLGACSQAGWTEEGRSYFNEMQH--KHGISP 427

Query: 234 NVQSCNSMINGYIRFGRLEEAQNLFDTVPVR-DEISWTSMI 273
            ++    M+    R G+L++A ++ + +P   D   W S++
Sbjct: 428 RMEHYACMVTLLGRAGKLDDAYDIINQMPFEPDGCIWGSLL 468



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 62/241 (25%), Positives = 109/241 (45%), Gaps = 53/241 (21%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQR----NVVSYNAMLSGFLQNGRLSEARRLFEEMP---- 69
           +   S+   + EA  LF+    R    NVVS+ ++++  +QNGR  EA  LF EM     
Sbjct: 229 VAGLSRNAQVSEALRLFREFVGRGIELNVVSWTSIVACCVQNGRDLEAVDLFREMQSEGI 288

Query: 70  ERNVVS-----------------------------------WTAMICGLADAGRVCEARK 94
           E N V+                                    +A++   A  GRV +AR 
Sbjct: 289 EPNSVTIPCVLPAFANIAALMHGRSAHCFSLRKGFHHDIYVGSALVDMYAKCGRVRDARM 348

Query: 95  LFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIK----NVISWNAMIAGYVECCM 150
           +FE MP RNVVSWN+M+ G   +GE   A ++F SM       +++++  ++    +   
Sbjct: 349 IFEAMPYRNVVSWNAMIGGYAMHGEAENAVRLFRSMQSSKEKPDLVTFTCVLGACSQAGW 408

Query: 151 MGEAIVLFEEMEERNVVT-----WTSMISGYCRAGEVEEGYCLFRRMP-RKNVVSWTAMI 204
             E    F EM+ ++ ++     +  M++   RAG++++ Y +  +MP   +   W +++
Sbjct: 409 TEEGRSYFNEMQHKHGISPRMEHYACMVTLLGRAGKLDDAYDIINQMPFEPDGCIWGSLL 468

Query: 205 G 205
           G
Sbjct: 469 G 469


>gi|224125684|ref|XP_002319650.1| predicted protein [Populus trichocarpa]
 gi|222858026|gb|EEE95573.1| predicted protein [Populus trichocarpa]
          Length = 705

 Score =  278 bits (712), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 165/471 (35%), Positives = 253/471 (53%), Gaps = 17/471 (3%)

Query: 132 IKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRR 191
           + +V   NA++  Y EC  +  A +LF++M ER+VV+W++MI  Y           LF  
Sbjct: 141 VSDVFVVNALMQMYSECGSLVSARLLFDKMSERDVVSWSTMIRAYI---------TLFYG 191

Query: 192 MPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMIN----GYIR 247
             ++++VSWTAMI G+      +E   LF+ M  I +N    ++   + +I+    G ++
Sbjct: 192 FSQRSIVSWTAMIAGYIRCNDLEEGERLFVRM--IEENVFPNDITMLSLIISCGFVGAVQ 249

Query: 248 FGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGL 307
            G+   A  L +   +   ++ T+++D Y   G++ +A  +F +M ++D + WTAMIS  
Sbjct: 250 LGKRLHAYILRNGFGMSLALA-TALVDMYGKCGEIRSARAIFDSMKNKDVMTWTAMISAY 308

Query: 308 VQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDL 367
            Q      A  LF++MR +GV P   T   L         +D+G+  H  + K   E D+
Sbjct: 309 AQANCIDYAFQLFVQMRDNGVRPNELTMVSLLSLCAVNGALDMGKWFHAYIDKQGVEVDV 368

Query: 368 ILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLES 427
           IL+  LI MYAKCG I  A  +FS  + RD+ +WN M+ G+  HG   + LK+F  M   
Sbjct: 369 ILKTALIDMYAKCGDISGAQRLFSEAIDRDICTWNVMMAGYGMHGYGEKALKLFTEMETL 428

Query: 428 GTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKE 487
           G  PN +TF+G L ACSHAGLV  G  LF  M   + + P  EHY  M++LLGRAG + E
Sbjct: 429 GVKPNDITFIGALHACSHAGLVVEGKGLFEKMIHDFGLVPKVEHYGCMVDLLGRAGLLDE 488

Query: 488 AEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYA 547
           A + +  +P  P+  IWGA+L AC     N+ + E AA+ LL L+P N    V++ NIYA
Sbjct: 489 AYKMIESMPVTPNIAIWGAMLAACKI-HKNSNMGELAARELLALEPQNCGYKVLMSNIYA 547

Query: 548 ASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
           A+ R  +   +R  +   G++K PG S +  NG +  F  GD     + +I
Sbjct: 548 AANRWNDVAGMRKAVKDTGIKKEPGMSSIEVNGLVHDFKMGDTAHPLIEKI 598



 Score =  142 bits (358), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 111/393 (28%), Positives = 184/393 (46%), Gaps = 34/393 (8%)

Query: 41  NVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMP 100
           +V   NA++  + + G L  AR LF++M ER+VVSW+ MI              LF    
Sbjct: 143 DVFVVNALMQMYSECGSLVSARLLFDKMSERDVVSWSTMIRAYI---------TLFYGFS 193

Query: 101 ERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEE 160
           +R++VSW +M+ G IR  +L E  ++F  M  +NV   +  +   +  C    A+ L + 
Sbjct: 194 QRSIVSWTAMIAGYIRCNDLEEGERLFVRMIEENVFPNDITMLSLIISCGFVGAVQLGKR 253

Query: 161 MEE---RN-----VVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGF 212
           +     RN     +   T+++  Y + GE+     +F  M  K+V++WTAMI  +A    
Sbjct: 254 LHAYILRNGFGMSLALATALVDMYGKCGEIRSARAIFDSMKNKDVMTWTAMISAYAQANC 313

Query: 213 HKESLLLFIEMKGICDNGNNCNVQSCNSM-----INGYIRFGRLEEAQNLFDTVPVRDEI 267
              +  LF++M+   DNG   N  +  S+     +NG +  G+   A      V V D I
Sbjct: 314 IDYAFQLFVQMR---DNGVRPNELTMVSLLSLCAVNGALDMGKWFHAYIDKQGVEV-DVI 369

Query: 268 SWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHG 327
             T++ID Y   G +S A  LF    DRD   W  M++G   +    +A  LF EM   G
Sbjct: 370 LKTALIDMYAKCGDISGAQRLFSEAIDRDICTWNVMMAGYGMHGYGEKALKLFTEMETLG 429

Query: 328 VPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILE----NCLISMYAKCGVI 383
           V P + TF    GA  A ++  L  +   +  K   +  L+ +     C++ +  + G++
Sbjct: 430 VKPNDITF---IGALHACSHAGLVVEGKGLFEKMIHDFGLVPKVEHYGCMVDLLGRAGLL 486

Query: 384 DNAYNIFSNM-VSRDLVSWNSMVMGFSHHGLAN 415
           D AY +  +M V+ ++  W +M+     H  +N
Sbjct: 487 DEAYKMIESMPVTPNIAIWGAMLAACKIHKNSN 519



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 77/330 (23%), Positives = 143/330 (43%), Gaps = 60/330 (18%)

Query: 32  ALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNV----VSWTAMICGLADAG 87
            LF    QR++VS+ AM++G+++   L E  RLF  M E NV    ++  ++I      G
Sbjct: 187 TLFYGFSQRSIVSWTAMIAGYIRCNDLEEGERLFVRMIEENVFPNDITMLSLIISCGFVG 246

Query: 88  RVCEARKLFEEMPERNVVSWNSMVVGLI----RNGELNEARKVFNSMPIKNVISWNAMIA 143
            V   ++L   +         ++   L+    + GE+  AR +F+SM  K+V++W AMI+
Sbjct: 247 AVQLGKRLHAYILRNGFGMSLALATALVDMYGKCGEIRSARAIFDSMKNKDVMTWTAMIS 306

Query: 144 GYVECCMMGEAIVLFEEME---------------------------------------ER 164
            Y +   +  A  LF +M                                        E 
Sbjct: 307 AYAQANCIDYAFQLFVQMRDNGVRPNELTMVSLLSLCAVNGALDMGKWFHAYIDKQGVEV 366

Query: 165 NVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMK 224
           +V+  T++I  Y + G++     LF     +++ +W  M+ G+  +G+ +++L LF EM+
Sbjct: 367 DVILKTALIDMYAKCGDISGAQRLFSEAIDRDICTWNVMMAGYGMHGYGEKALKLFTEME 426

Query: 225 GICDNGNNCN----VQSCNS---MINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYL 277
            +    N+      + +C+    ++ G    G  E+  + F  VP  +   +  M+D   
Sbjct: 427 TLGVKPNDITFIGALHACSHAGLVVEGK---GLFEKMIHDFGLVPKVEH--YGCMVDLLG 481

Query: 278 SVGQVSNAYYLFHNMPDRDAVA-WTAMISG 306
             G +  AY +  +MP    +A W AM++ 
Sbjct: 482 RAGLLDEAYKMIESMPVTPNIAIWGAMLAA 511



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 67/273 (24%), Positives = 125/273 (45%), Gaps = 48/273 (17%)

Query: 15  TSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNV- 73
           T+ +  Y K G I  A+A+F  M  ++V+++ AM+S + Q   +  A +LF +M +  V 
Sbjct: 271 TALVDMYGKCGEIRSARAIFDSMKNKDVMTWTAMISAYAQANCIDYAFQLFVQMRDNGVR 330

Query: 74  ------VSWTAM--ICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARK 125
                 VS  ++  + G  D G+   A  + ++  E +V+   +++    + G+++ A++
Sbjct: 331 PNELTMVSLLSLCAVNGALDMGKWFHAY-IDKQGVEVDVILKTALIDMYAKCGDISGAQR 389

Query: 126 VFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEME----ERNVVTWTSMISGYCRAGE 181
           +F+    +++ +WN M+AGY       +A+ LF EME    + N +T+   +     AG 
Sbjct: 390 LFSEAIDRDICTWNVMMAGYGMHGYGEKALKLFTEMETLGVKPNDITFIGALHACSHAGL 449

Query: 182 VEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSM 241
           V EG  LF +M                                 I D G    V+    M
Sbjct: 450 VVEGKGLFEKM---------------------------------IHDFGLVPKVEHYGCM 476

Query: 242 INGYIRFGRLEEAQNLFDTVPVRDEIS-WTSMI 273
           ++   R G L+EA  + +++PV   I+ W +M+
Sbjct: 477 VDLLGRAGLLDEAYKMIESMPVTPNIAIWGAML 509


>gi|222641140|gb|EEE69272.1| hypothetical protein OsJ_28537 [Oryza sativa Japonica Group]
          Length = 784

 Score =  278 bits (712), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 181/636 (28%), Positives = 308/636 (48%), Gaps = 62/636 (9%)

Query: 18  ITKYSKRGFIDEAKALF-QLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMP------- 69
           +  Y   GF+D+A+ +F +   +RN VS+N ++S +++N +  +A ++F EM        
Sbjct: 49  VAMYGGFGFMDDARRVFDEAGSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPT 108

Query: 70  --------------------------------ERNVVSWTAMICGLADAGRVCEARKLFE 97
                                           E++V +  A++      GRV  A  +FE
Sbjct: 109 EFGFSCVVNACTGSRNIDAGRQVHAMVVRMGYEKDVFTANALVDMYVKMGRVDIASVIFE 168

Query: 98  EMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVL 157
           +MP+ +VVSWN+++ G + NG  + A ++   M    ++    M++  ++ C    A  L
Sbjct: 169 KMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKSSGLVPNVFMLSSILKACAGAGAFDL 228

Query: 158 FEEME--------ERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAW 209
             ++         + +      ++  Y +   +++   +F  M  ++++ W A+I G + 
Sbjct: 229 GRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDAMKVFDWMSHRDLILWNALISGCSH 288

Query: 210 NGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISW 269
            G H E+  +F    G+   G   N  +  +++        LE A        + ++I +
Sbjct: 289 GGRHDEAFSIFY---GLRKEGLGVNRTTLAAVLKST---ASLEAASATRQVHALAEKIGF 342

Query: 270 -------TSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFME 322
                    +ID Y     +S+A  +F      D +A T+MI+ L Q +    A  LFME
Sbjct: 343 IFDAHVVNGLIDSYWKCSCLSDAIRVFEECSSGDIIAVTSMITALSQCDHGEGAIKLFME 402

Query: 323 MRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGV 382
           M   G+ P     S L  A  + +  + G+Q+H  L+K +  SD    N L+  YAKCG 
Sbjct: 403 MLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDAFAGNALVYTYAKCGS 462

Query: 383 IDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSA 442
           I++A   FS++  R +VSW++M+ G + HG     L++F  M++ G +PN +T   +L A
Sbjct: 463 IEDAELAFSSLPERGVVSWSAMIGGLAQHGHGKRALELFGRMVDEGINPNHITMTSVLCA 522

Query: 443 CSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHR 502
           C+HAGLV      FN+M +++ I    EHY  MI+LLGRAGK+ +A E V  +PF+ +  
Sbjct: 523 CNHAGLVDEAKRYFNSMKEMFGIDRTEEHYSCMIDLLGRAGKLDDAMELVNSMPFQANAS 582

Query: 503 IWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDM 562
           +WGALLGA      + E+ + AA++L  L+P  +  HV+L N YA+SG   E  K+R  M
Sbjct: 583 VWGALLGA-SRVHKDPELGKLAAEKLFILEPEKSGTHVLLANTYASSGMWNEVAKVRKLM 641

Query: 563 GLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
               ++K P  SW+     +  F+ GDK      EI
Sbjct: 642 KDSNIKKEPAMSWVEVKDKVHTFIVGDKSHPMTKEI 677



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 118/498 (23%), Positives = 210/498 (42%), Gaps = 37/498 (7%)

Query: 72  NVVSWTAMICGLADAGRVCEARKLFEEM-PERNVVSWNSMVVGLIRNGELNEARKVFNSM 130
           +V    A++      G + +AR++F+E   ERN VSWN ++   ++N +  +A +VF  M
Sbjct: 41  DVFVANALVAMYGGFGFMDDARRVFDEAGSERNAVSWNGLMSAYVKNDQCGDAIQVFGEM 100

Query: 131 PIKNVISWNAMIAGYVECCMMGEAIVLFEEME--------ERNVVTWTSMISGYCRAGEV 182
               +       +  V  C     I    ++         E++V T  +++  Y + G V
Sbjct: 101 VWSGIQPTEFGFSCVVNACTGSRNIDAGRQVHAMVVRMGYEKDVFTANALVDMYVKMGRV 160

Query: 183 EEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMI 242
           +    +F +MP  +VVSW A+I G   NG    ++ L ++MK    +G   NV   +S++
Sbjct: 161 DIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKS---SGLVPNVFMLSSIL 217

Query: 243 NGYIRFGRLEEAQN----LFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAV 298
                 G  +  +     +       D+     ++D Y     + +A  +F  M  RD +
Sbjct: 218 KACAGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDAMKVFDWMSHRDLI 277

Query: 299 AWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVL 358
            W A+ISG        EA  +F  +R  G+     T + +  +  +       RQ+H + 
Sbjct: 278 LWNALISGCSHGGRHDEAFSIFYGLRKEGLGVNRTTLAAVLKSTASLEAASATRQVHALA 337

Query: 359 MKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETL 418
            K     D  + N LI  Y KC  + +A  +F    S D+++  SM+   S        +
Sbjct: 338 EKIGFIFDAHVVNGLIDSYWKCSCLSDAIRVFEECSSGDIIAVTSMITALSQCDHGEGAI 397

Query: 419 KVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYV--SMI 476
           K+F  ML  G  P+      +L+AC+      +G ++   +    K Q   + +   +++
Sbjct: 398 KLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLI---KRQFMSDAFAGNALV 454

Query: 477 NLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHA-AKRLLEL---- 531
               + G I++AE     LP E     W A++G          +A+H   KR LEL    
Sbjct: 455 YTYAKCGSIEDAELAFSSLP-ERGVVSWSAMIGG---------LAQHGHGKRALELFGRM 504

Query: 532 -DPLNAPAHVVLCNIYAA 548
            D    P H+ + ++  A
Sbjct: 505 VDEGINPNHITMTSVLCA 522



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 55/201 (27%), Positives = 89/201 (44%), Gaps = 28/201 (13%)

Query: 323 MRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGV 382
           MRA GV        V+        +  LG Q+H + M T   SD+ + N L++MY   G 
Sbjct: 1   MRAEGVCCNEFALPVVLKC---VPDAQLGAQVHAMAMATGFGSDVFVANALVAMYGGFGF 57

Query: 383 IDNAYNIFSNMVS-RDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILS 441
           +D+A  +F    S R+ VSWN ++  +  +    + ++VF  M+ SG  P    F  +++
Sbjct: 58  MDDARRVFDEAGSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVN 117

Query: 442 ACS-----------HAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEE 490
           AC+           HA +V  G+E      DV+      + YV M       G++  A  
Sbjct: 118 ACTGSRNIDAGRQVHAMVVRMGYEK-----DVFTANALVDMYVKM-------GRVDIASV 165

Query: 491 FVLRLPFEPDHRIWGALLGAC 511
              ++P + D   W AL+  C
Sbjct: 166 IFEKMP-DSDVVSWNALISGC 185


>gi|115478174|ref|NP_001062682.1| Os09g0251500 [Oryza sativa Japonica Group]
 gi|47848472|dbj|BAD22327.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|47848643|dbj|BAD22491.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113630915|dbj|BAF24596.1| Os09g0251500 [Oryza sativa Japonica Group]
 gi|215767397|dbj|BAG99625.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 877

 Score =  278 bits (712), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 181/636 (28%), Positives = 308/636 (48%), Gaps = 62/636 (9%)

Query: 18  ITKYSKRGFIDEAKALF-QLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMP------- 69
           +  Y   GF+D+A+ +F +   +RN VS+N ++S +++N +  +A ++F EM        
Sbjct: 142 VAMYGGFGFMDDARRVFDEAGSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPT 201

Query: 70  --------------------------------ERNVVSWTAMICGLADAGRVCEARKLFE 97
                                           E++V +  A++      GRV  A  +FE
Sbjct: 202 EFGFSCVVNACTGSRNIDAGRQVHAMVVRMGYEKDVFTANALVDMYVKMGRVDIASVIFE 261

Query: 98  EMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVL 157
           +MP+ +VVSWN+++ G + NG  + A ++   M    ++    M++  ++ C    A  L
Sbjct: 262 KMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKSSGLVPNVFMLSSILKACAGAGAFDL 321

Query: 158 FEEME--------ERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAW 209
             ++         + +      ++  Y +   +++   +F  M  ++++ W A+I G + 
Sbjct: 322 GRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDAMKVFDWMSHRDLILWNALISGCSH 381

Query: 210 NGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISW 269
            G H E+  +F    G+   G   N  +  +++        LE A        + ++I +
Sbjct: 382 GGRHDEAFSIFY---GLRKEGLGVNRTTLAAVLKST---ASLEAASATRQVHALAEKIGF 435

Query: 270 -------TSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFME 322
                    +ID Y     +S+A  +F      D +A T+MI+ L Q +    A  LFME
Sbjct: 436 IFDAHVVNGLIDSYWKCSCLSDAIRVFEECSSGDIIAVTSMITALSQCDHGEGAIKLFME 495

Query: 323 MRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGV 382
           M   G+ P     S L  A  + +  + G+Q+H  L+K +  SD    N L+  YAKCG 
Sbjct: 496 MLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDAFAGNALVYTYAKCGS 555

Query: 383 IDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSA 442
           I++A   FS++  R +VSW++M+ G + HG     L++F  M++ G +PN +T   +L A
Sbjct: 556 IEDAELAFSSLPERGVVSWSAMIGGLAQHGHGKRALELFGRMVDEGINPNHITMTSVLCA 615

Query: 443 CSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHR 502
           C+HAGLV      FN+M +++ I    EHY  MI+LLGRAGK+ +A E V  +PF+ +  
Sbjct: 616 CNHAGLVDEAKRYFNSMKEMFGIDRTEEHYSCMIDLLGRAGKLDDAMELVNSMPFQANAS 675

Query: 503 IWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDM 562
           +WGALLGA      + E+ + AA++L  L+P  +  HV+L N YA+SG   E  K+R  M
Sbjct: 676 VWGALLGA-SRVHKDPELGKLAAEKLFILEPEKSGTHVLLANTYASSGMWNEVAKVRKLM 734

Query: 563 GLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
               ++K P  SW+     +  F+ GDK      EI
Sbjct: 735 KDSNIKKEPAMSWVEVKDKVHTFIVGDKSHPMTKEI 770



 Score =  152 bits (384), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 144/519 (27%), Positives = 227/519 (43%), Gaps = 57/519 (10%)

Query: 88  RVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVE 147
           R C AR++F+E+P+   VSW+S+V     NG    A + F+ M  + V      +   ++
Sbjct: 52  RPCCARRVFDEIPDPCHVSWSSLVTAYSNNGLPRSAIQAFHGMRAEGVCCNEFALPVVLK 111

Query: 148 CCMMGEAIVLFEEME-----ERNVVTWTSMISGYCRAGEVEEGYCLFRRM-PRKNVVSWT 201
           C    +       M        +V    ++++ Y   G +++   +F      +N VSW 
Sbjct: 112 CVPDAQLGAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFDEAGSERNAVSWN 171

Query: 202 AMIGGFAWNGFHKESLLLFIEM--KGI--CDNGNNCNVQSCNSMINGYIRFGRLEEAQNL 257
            ++  +  N    +++ +F EM   GI   + G +C V +C    N  I  GR   A  +
Sbjct: 172 GLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRN--IDAGRQVHAM-V 228

Query: 258 FDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEAT 317
                 +D  +  +++D Y+ +G+V  A  +F  MPD D V+W A+ISG V N     A 
Sbjct: 229 VRMGYEKDVFTANALVDMYVKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAI 288

Query: 318 YLFMEMRAHG-VPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISM 376
            L ++M++ G VP +    S+L   AGA A  DLGRQIH  ++K  ++SD  +   L+ M
Sbjct: 289 ELLLQMKSSGLVPNVFMLSSILKACAGAGA-FDLGRQIHGFMIKANADSDDYIGVGLVDM 347

Query: 377 YAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTF 436
           YAK   +D+A  +F  M  RDL+ WN+++ G SH G  +E   +F  + + G   N  T 
Sbjct: 348 YAKNHFLDDAMKVFDWMSHRDLILWNALISGCSHGGRHDEAFSIFYGLRKEGLGVNRTTL 407

Query: 437 LGILS------ACSHAGLVSRGWELFNAMFDVYKIQPGPEHY------------------ 472
             +L       A S    V    E    +FD + +    + Y                  
Sbjct: 408 AAVLKSTASLEAASATRQVHALAEKIGFIFDAHVVNGLIDSYWKCSCLSDAIRVFEECSS 467

Query: 473 ------VSMINLLGRA----GKIKEAEEFVLRLPFEPDHRIWGALLGACGFC---EGNAE 519
                  SMI  L +     G IK   E +LR   EPD  +  +LL AC      E   +
Sbjct: 468 GDIIAVTSMITALSQCDHGEGAIKLFME-MLRKGLEPDPFVLSSLLNACASLSAYEQGKQ 526

Query: 520 IAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKL 558
           +  H  KR    D     A   L   YA  G  +E+ +L
Sbjct: 527 VHAHLIKRQFMSDAFAGNA---LVYTYAKCGS-IEDAEL 561



 Score = 41.2 bits (95), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 29/98 (29%), Positives = 44/98 (44%), Gaps = 2/98 (2%)

Query: 351 GRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSH 410
           G  +H  L+K+   + L   N LIS Y+KC     A  +F  +     VSW+S+V  +S+
Sbjct: 23  GAHLHANLLKSGFLASL--RNHLISFYSKCRRPCCARRVFDEIPDPCHVSWSSLVTAYSN 80

Query: 411 HGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGL 448
           +GL    ++ F  M   G   N      +L     A L
Sbjct: 81  NGLPRSAIQAFHGMRAEGVCCNEFALPVVLKCVPDAQL 118


>gi|302801528|ref|XP_002982520.1| hypothetical protein SELMODRAFT_116755 [Selaginella moellendorffii]
 gi|300149619|gb|EFJ16273.1| hypothetical protein SELMODRAFT_116755 [Selaginella moellendorffii]
          Length = 694

 Score =  278 bits (712), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 179/532 (33%), Positives = 279/532 (52%), Gaps = 27/532 (5%)

Query: 41  NVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEM- 99
           +VV   A+++ + + G L  AR +F  MPERNVVSW AM+          EA +LF+ M 
Sbjct: 146 DVVLGTALVTMYGRCGCLESAREIFHRMPERNVVSWNAMVASCTLNAHFAEAIELFKRMV 205

Query: 100 ------PERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISW----NAMIAGYVECC 149
                 P R  VS+ +++  +     L E R++   +  + ++S     NA++  Y  C 
Sbjct: 206 AVAMVEPTR--VSFITVLNAVTTREALAEGRRIHEMIQERQLLSQIEVANALVTMYGRCG 263

Query: 150 MMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRM------PRKNVVSWTAM 203
            +G+A  +F  ME R++V+W +MIS Y ++G   E   LF RM        ++V+SW  M
Sbjct: 264 GVGDAERVFSAMERRDLVSWNAMISAYAQSGLACEVVNLFHRMRAERSMAARDVISWNTM 323

Query: 204 IGGFAWNGFHKESLLLFIEM--KGICDNGNNCNVQSCNSMINGYIRFGRLEEAQN-LFDT 260
           I G+   G    +L +F  M  +GI   GN     S  S+ +      + E     + D 
Sbjct: 324 ITGYVQAGDPFSALSIFKRMLLEGI--RGNQVTFMSLLSVCDSRALLRQGETIHRCVIDQ 381

Query: 261 VP--VRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATY 318
            P    D I   ++++ Y   G++  A +LF +   R+  +W +MIS    +    +A  
Sbjct: 382 TPELSSDPIVAAAIVNMYGKCGELDTARHLFEDTSHRNLASWNSMISAYALHGRAEQAFD 441

Query: 319 LFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYA 378
           L   MR  GV P   TF  L  A  A   +  G+ IH  ++ +  E D ++ N L++ Y+
Sbjct: 442 LSERMRREGVLPDRVTFITLLNACVAGGAVRQGKMIHARIIDSGLEKDTVVANALVNFYS 501

Query: 379 KCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLG 438
           KCG +D A ++F  +  RD+VSWN ++ GF+H+G A E LK    M + G  P+++TFL 
Sbjct: 502 KCGNLDTATSLFGALDYRDVVSWNGIIAGFAHNGHAREALKSMWLMQQDGVRPDAITFLT 561

Query: 439 ILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFE 498
           ILSA SHAG + +G + F +M   ++++ G EHY  MI+LLGRAG+I EAE FV  +  E
Sbjct: 562 ILSASSHAGFLRQGGDDFVSMAVDHELERGVEHYGCMIDLLGRAGRIGEAEYFVSAMRDE 621

Query: 499 PDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASG 550
                W  LL AC    G+ E A+  A  ++E++P ++ A+V L N+YA  G
Sbjct: 622 DKEVSWMTLLSACEV-HGDEERAKRVAGSIVEMNPQHSSAYVALSNLYATCG 672



 Score =  184 bits (466), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 134/515 (26%), Positives = 223/515 (43%), Gaps = 63/515 (12%)

Query: 41  NVVSYNAMLSG-----FLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKL 95
           N V++ A+L       FL++G+   AR    ++ E +V    A++       R   A  +
Sbjct: 9   NRVTFLALLEACDSPEFLEDGKQIHARVSALQLLESDVPVANAVMGMYRKCERADLAMAV 68

Query: 96  FEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAI 155
           F EM ER+++SWN+ +     +G+      +  SM ++ +          +  C+   ++
Sbjct: 69  FSEMRERDLISWNNAIAANAESGDYTFTLALLKSMQLEGMAPDKVTFVSALNACIGSRSL 128

Query: 156 --------VLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGF 207
                   ++ E   E +VV  T++++ Y R G +E    +F RMP +NVVSW AM+   
Sbjct: 129 SNGRLIHALVLERGMEGDVVLGTALVTMYGRCGCLESAREIFHRMPERNVVSWNAMVASC 188

Query: 208 AWNGFHKESLLLFIEMKGIC---------------------------------DNGNNCN 234
             N    E++ LF  M  +                                  +      
Sbjct: 189 TLNAHFAEAIELFKRMVAVAMVEPTRVSFITVLNAVTTREALAEGRRIHEMIQERQLLSQ 248

Query: 235 VQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFH---- 290
           ++  N+++  Y R G + +A+ +F  +  RD +SW +MI  Y   G       LFH    
Sbjct: 249 IEVANALVTMYGRCGGVGDAERVFSAMERRDLVSWNAMISAYAQSGLACEVVNLFHRMRA 308

Query: 291 --NMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANI 348
             +M  RD ++W  MI+G VQ      A  +F  M   G+     TF  L     + A +
Sbjct: 309 ERSMAARDVISWNTMITGYVQAGDPFSALSIFKRMLLEGIRGNQVTFMSLLSVCDSRALL 368

Query: 349 DLGRQIH-CVLMKT-ESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVM 406
             G  IH CV+ +T E  SD I+   +++MY KCG +D A ++F +   R+L SWNSM+ 
Sbjct: 369 RQGETIHRCVIDQTPELSSDPIVAAAIVNMYGKCGELDTARHLFEDTSHRNLASWNSMIS 428

Query: 407 GFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQ 466
            ++ HG A +   + E M   G  P+ VTF+ +L+AC   G V +G      M     I 
Sbjct: 429 AYALHGRAEQAFDLSERMRREGVLPDRVTFITLLNACVAGGAVRQG-----KMIHARIID 483

Query: 467 PGPEHYV----SMINLLGRAGKIKEAEEFVLRLPF 497
            G E       +++N   + G +  A      L +
Sbjct: 484 SGLEKDTVVANALVNFYSKCGNLDTATSLFGALDY 518



 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 68/280 (24%), Positives = 133/280 (47%), Gaps = 11/280 (3%)

Query: 235 VQSCNS---MINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHN 291
           +++C+S   + +G     R+   Q L   VPV + +     +  Y    +   A  +F  
Sbjct: 17  LEACDSPEFLEDGKQIHARVSALQLLESDVPVANAV-----MGMYRKCERADLAMAVFSE 71

Query: 292 MPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLG 351
           M +RD ++W   I+   ++  +     L   M+  G+ P   TF     A   + ++  G
Sbjct: 72  MRERDLISWNNAIAANAESGDYTFTLALLKSMQLEGMAPDKVTFVSALNACIGSRSLSNG 131

Query: 352 RQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHH 411
           R IH ++++   E D++L   L++MY +CG +++A  IF  M  R++VSWN+MV   + +
Sbjct: 132 RLIHALVLERGMEGDVVLGTALVTMYGRCGCLESAREIFHRMPERNVVSWNAMVASCTLN 191

Query: 412 GLANETLKVFESMLESG-THPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPE 470
               E +++F+ M+      P  V+F+ +L+A +    ++ G  + + M    ++    E
Sbjct: 192 AHFAEAIELFKRMVAVAMVEPTRVSFITVLNAVTTREALAEGRRI-HEMIQERQLLSQIE 250

Query: 471 HYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGA 510
              +++ + GR G + +AE  V       D   W A++ A
Sbjct: 251 VANALVTMYGRCGGVGDAER-VFSAMERRDLVSWNAMISA 289



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 61/201 (30%), Positives = 99/201 (49%), Gaps = 6/201 (2%)

Query: 323 MRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTE-SESDLILENCLISMYAKCG 381
           M    + P   TF  L  A  +   ++ G+QIH  +   +  ESD+ + N ++ MY KC 
Sbjct: 1   MAGSSLDPNRVTFLALLEACDSPEFLEDGKQIHARVSALQLLESDVPVANAVMGMYRKCE 60

Query: 382 VIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILS 441
             D A  +FS M  RDL+SWN+ +   +  G    TL + +SM   G  P+ VTF+  L+
Sbjct: 61  RADLAMAVFSEMRERDLISWNNAIAANAESGDYTFTLALLKSMQLEGMAPDKVTFVSALN 120

Query: 442 ACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDH 501
           AC  +  +S G  L +A+     ++       +++ + GR G ++ A E   R+P E + 
Sbjct: 121 ACIGSRSLSNG-RLIHALVLERGMEGDVVLGTALVTMYGRCGCLESAREIFHRMP-ERNV 178

Query: 502 RIWGALLGACGFCEGNAEIAE 522
             W A++ +C     NA  AE
Sbjct: 179 VSWNAMVASCTL---NAHFAE 196


>gi|356557931|ref|XP_003547263.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g04370-like [Glycine max]
          Length = 764

 Score =  278 bits (711), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 184/642 (28%), Positives = 319/642 (49%), Gaps = 57/642 (8%)

Query: 9   SLVVHLTSS-ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEE 67
           SL  ++ SS I  Y+K GF D A+ +F  MP+RNVV + +++  + + GR+ EA  LF+E
Sbjct: 101 SLDAYIASSLINFYAKFGFADVARKVFDFMPERNVVPWTSIIGCYSRTGRVPEAFSLFDE 160

Query: 68  MPERNV----VSWTAMICGLADAGRV-C--EARKLFEEMPERNVVSWNSMVVGLIRNGEL 120
           M  + +    V+  +++ G+++   V C   +  L+  M + N+ +    + G  RN E 
Sbjct: 161 MRRQGIQPSSVTMLSLLFGVSELAHVQCLHGSAILYGFMSDINLSNSMLSMYGKCRNIEY 220

Query: 121 NEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEME----ERNVVTW------- 169
             +RK+F+ M  ++++SWN++++ Y +   + E ++L + M     E +  T+       
Sbjct: 221 --SRKLFDYMDQRDLVSWNSLVSAYAQIGYICEVLLLLKTMRIQGFEPDPQTFGSVLSVA 278

Query: 170 ----------------------------TSMISGYCRAGEVEEGYCLFRRMPRKNVVSWT 201
                                       TS+I  Y + G ++  + +F R   K+VV WT
Sbjct: 279 ASRGELKLGRCLHGQILRTCFDLDAHVETSLIVMYLKGGNIDIAFRMFERSLDKDVVLWT 338

Query: 202 AMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQN----L 257
           AMI G   NG   ++L +F +M      G   +  +  S+I    + G      +    +
Sbjct: 339 AMISGLVQNGSADKALAVFRQMLKF---GVKSSTATMASVITACAQLGSYNLGTSVHGYM 395

Query: 258 FDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEAT 317
           F      D  +  S++  +   G +  +  +F  M  R+ V+W AMI+G  QN    +A 
Sbjct: 396 FRHELPMDIATQNSLVTMHAKCGHLDQSSIVFDKMNKRNLVSWNAMITGYAQNGYVCKAL 455

Query: 318 YLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMY 377
           +LF EMR+    P + T   L     +T  + LG+ IH  +++      ++++  L+ MY
Sbjct: 456 FLFNEMRSDHQTPDSITIVSLLQGCASTGQLHLGKWIHSFVIRNGLRPCILVDTSLVDMY 515

Query: 378 AKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFL 437
            KCG +D A   F+ M S DLVSW+++++G+ +HG     L+ +   LESG  PN V FL
Sbjct: 516 CKCGDLDIAQRCFNQMPSHDLVSWSAIIVGYGYHGKGETALRFYSKFLESGMKPNHVIFL 575

Query: 438 GILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPF 497
            +LS+CSH GLV +G  ++ +M   + I P  EH+  +++LL RAG+++EA     +   
Sbjct: 576 SVLSSCSHNGLVEQGLNIYESMTRDFGIAPNLEHHACVVDLLSRAGRVEEAYNLYKKKFS 635

Query: 498 EPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHK 557
           +P   + G +L AC    GN E+ +  A  +L L P++A   V L + YA+  +  E  +
Sbjct: 636 DPVLDVLGIILDACR-ANGNNELGDTIANDILMLKPMDAGNFVQLAHCYASINKWEEVGE 694

Query: 558 LRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEIL 599
               M   G++K+PG S++  +G I  F +      Q  EI+
Sbjct: 695 AWTHMRSLGLKKIPGWSFIDIHGTITTFFTDHNSHPQFQEIV 736



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 63/225 (28%), Positives = 96/225 (42%), Gaps = 32/225 (14%)

Query: 314 VEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCL 373
           V ATY  M ++ H VP    TF  L  A  +     LG  +H  ++ +    D  + + L
Sbjct: 53  VLATYASM-LKTH-VPSDAYTFPSLLKACSSLNLFSLGLSLHQRILVSGLSLDAYIASSL 110

Query: 374 ISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNS 433
           I+ YAK G  D A  +F  M  R++V W S++  +S  G   E   +F+ M   G  P+S
Sbjct: 111 INFYAKFGFADVARKVFDFMPERNVVPWTSIIGCYSRTGRVPEAFSLFDEMRRQGIQPSS 170

Query: 434 VTFLGIL--------SACSHAGLVSRGW----ELFNAMFDVYKIQPGPEH---------- 471
           VT L +L          C H   +  G+     L N+M  +Y      E+          
Sbjct: 171 VTMLSLLFGVSELAHVQCLHGSAILYGFMSDINLSNSMLSMYGKCRNIEYSRKLFDYMDQ 230

Query: 472 --YVSMINLLGRAGKIKEAEEFVLRLP------FEPDHRIWGALL 508
              VS  +L+    +I    E +L L       FEPD + +G++L
Sbjct: 231 RDLVSWNSLVSAYAQIGYICEVLLLLKTMRIQGFEPDPQTFGSVL 275



 Score = 46.2 bits (108), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 48/220 (21%), Positives = 96/220 (43%), Gaps = 28/220 (12%)

Query: 4   RNHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARR 63
           RN  +  ++  TS +  Y K G +D A+  F  MP  ++VS++A++ G+  +G+   A R
Sbjct: 498 RNGLRPCILVDTSLVDMYCKCGDLDIAQRCFNQMPSHDLVSWSAIIVGYGYHGKGETALR 557

Query: 64  LFEEMPER----NVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWN----SMVVGLI 115
            + +  E     N V + +++   +  G V +   ++E M     ++ N    + VV L+
Sbjct: 558 FYSKFLESGMKPNHVIFLSVLSSCSHNGLVEQGLNIYESMTRDFGIAPNLEHHACVVDLL 617

Query: 116 -RNGELNEARKVFN---SMPIKNVISWNAMIAGYVECC----------MMGEAIVLFEEM 161
            R G + EA  ++    S P+ +V+         ++ C           +   I++ + M
Sbjct: 618 SRAGRVEEAYNLYKKKFSDPVLDVLGI------ILDACRANGNNELGDTIANDILMLKPM 671

Query: 162 EERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWT 201
           +  N V      +   +  EV E +   R +  K +  W+
Sbjct: 672 DAGNFVQLAHCYASINKWEEVGEAWTHMRSLGLKKIPGWS 711


>gi|356577059|ref|XP_003556647.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 821

 Score =  278 bits (711), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 188/634 (29%), Positives = 307/634 (48%), Gaps = 58/634 (9%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVV--S 75
           I  YS  GF+  A+ +F           NAM++GFL+N +  E  RLF  M   ++   S
Sbjct: 86  IRVYSDLGFLGHARNVFDQCSLPETAVCNAMIAGFLRNQQHMEVPRLFRMMGSCDIEINS 145

Query: 76  WTAMI----CG--LADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNS 129
           +T M     C   L D   +   R         ++   +SMV  L++ G L +A+KVF+ 
Sbjct: 146 YTCMFALKACTDLLDDEVGMEIIRAAVRRGFHLHLYVGSSMVNFLVKRGYLADAQKVFDG 205

Query: 130 MPIKNVISWNAMIAGYVECCMMGEAIVLFEEM---------------------------- 161
           MP K+V+ WN++I GYV+  +  E+I +F EM                            
Sbjct: 206 MPEKDVVCWNSIIGGYVQKGLFWESIQMFLEMIGGGLRPSPVTMANLLKACGQSGLKKVG 265

Query: 162 -----------EERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWN 210
                         +V   TS++  Y   G+      +F  M  ++++SW AMI G+  N
Sbjct: 266 MCAHSYVLALGMGNDVFVLTSLVDMYSNLGDTGSAALVFDSMCSRSLISWNAMISGYVQN 325

Query: 211 GFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISW- 269
           G   ES  LF   + +  +G+  +  +  S+I G  +   LE  + L   + +R E+   
Sbjct: 326 GMIPESYALF---RRLVQSGSGFDSGTLVSLIRGCSQTSDLENGRILHSCI-IRKELESH 381

Query: 270 ----TSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRA 325
               T+++D Y   G +  A  +F  M  ++ + WTAM+ GL QN    +A  LF +M+ 
Sbjct: 382 LVLSTAIVDMYSKCGAIKQATIVFGRMGKKNVITWTAMLVGLSQNGYAEDALKLFCQMQE 441

Query: 326 HGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDN 385
             V   + T   L        ++  GR +H   ++     D ++ + LI MYAKCG I +
Sbjct: 442 EKVAANSVTLVSLVHCCAHLGSLTKGRTVHAHFIRHGYAFDAVITSALIDMYAKCGKIHS 501

Query: 386 AYNIFSNMVS-RDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACS 444
           A  +F+N    +D++  NSM+MG+  HG     L V+  M+E    PN  TF+ +L+ACS
Sbjct: 502 AEKLFNNEFHLKDVILCNSMIMGYGMHGHGRYALGVYSRMIEERLKPNQTTFVSLLTACS 561

Query: 445 HAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIW 504
           H+GLV  G  LF++M   + ++P  +HY  +++L  RAG+++EA+E V ++PF+P   + 
Sbjct: 562 HSGLVEEGKALFHSMERDHDVRPQHKHYACLVDLHSRAGRLEEADELVKQMPFQPSTDVL 621

Query: 505 GALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGL 564
            ALL  C     N  +    A RL+ LD LN+  +V+L NIYA + +    + +R  M +
Sbjct: 622 EALLSGCR-THKNTNMGIQIADRLISLDYLNSGIYVMLSNIYAEARKWESVNYIRGLMRM 680

Query: 565 KGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
           +G++K+PG S +     +  F + D      A+I
Sbjct: 681 QGMKKIPGYSLIEVGNKVYTFFASDDSHPSWADI 714



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 97/423 (22%), Positives = 182/423 (43%), Gaps = 64/423 (15%)

Query: 90  CEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSM-----------------PI 132
           C  R ++   P    VS +            N+A  VF+S+                  I
Sbjct: 19  CNCRPIYNAAPSSTFVSVHHAPF-------FNQAPSVFSSLLHQFSNTLIHVKSIHAQII 71

Query: 133 KNVISWNAMIAG-----YVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYC 187
           KN +S  + +A      Y +   +G A  +F++          +MI+G+ R  +  E   
Sbjct: 72  KNWVSTESFLAAKLIRVYSDLGFLGHARNVFDQCSLPETAVCNAMIAGFLRNQQHMEVPR 131

Query: 188 LFRRMPRKNVV--SWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGY 245
           LFR M   ++   S+T M    A      + + + I ++     G + ++   +SM+N  
Sbjct: 132 LFRMMGSCDIEINSYTCMFALKACTDLLDDEVGMEI-IRAAVRRGFHLHLYVGSSMVNFL 190

Query: 246 IRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMIS 305
           ++ G L +AQ +FD +P +D + W S+I GY                             
Sbjct: 191 VKRGYLADAQKVFDGMPEKDVVCWNSIIGGY----------------------------- 221

Query: 306 GLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESES 365
             VQ  LF E+  +F+EM   G+ P   T + L  A G +    +G   H  ++     +
Sbjct: 222 --VQKGLFWESIQMFLEMIGGGLRPSPVTMANLLKACGQSGLKKVGMCAHSYVLALGMGN 279

Query: 366 DLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESML 425
           D+ +   L+ MY+  G   +A  +F +M SR L+SWN+M+ G+  +G+  E+  +F  ++
Sbjct: 280 DVFVLTSLVDMYSNLGDTGSAALVFDSMCSRSLISWNAMISGYVQNGMIPESYALFRRLV 339

Query: 426 ESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKI 485
           +SG+  +S T + ++  CS    +  G  L + +    +++       +++++  + G I
Sbjct: 340 QSGSGFDSGTLVSLIRGCSQTSDLENGRILHSCIIR-KELESHLVLSTAIVDMYSKCGAI 398

Query: 486 KEA 488
           K+A
Sbjct: 399 KQA 401



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 84/344 (24%), Positives = 151/344 (43%), Gaps = 54/344 (15%)

Query: 14  LTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPER-- 71
           LTS +  YS  G    A  +F  M  R+++S+NAM+SG++QNG + E+  LF  + +   
Sbjct: 284 LTSLVDMYSNLGDTGSAALVFDSMCSRSLISWNAMISGYVQNGMIPESYALFRRLVQSGS 343

Query: 72  --NVVSWTAMICGLADA-----GRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEAR 124
             +  +  ++I G +       GR+  +  + +E+ E ++V   ++V    + G + +A 
Sbjct: 344 GFDSGTLVSLIRGCSQTSDLENGRILHSCIIRKEL-ESHLVLSTAIVDMYSKCGAIKQAT 402

Query: 125 KVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNV----VTWTSMISGYCRAG 180
            VF  M  KNVI+W AM+ G  +     +A+ LF +M+E  V    VT  S++      G
Sbjct: 403 IVFGRMGKKNVITWTAMLVGLSQNGYAEDALKLFCQMQEEKVAANSVTLVSLVHCCAHLG 462

Query: 181 EVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNS 240
            + +G  +     R           G+A++     +L                       
Sbjct: 463 SLTKGRTVHAHFIRH----------GYAFDAVITSAL----------------------- 489

Query: 241 MINGYIRFGRLEEAQNLFDT-VPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDR---- 295
            I+ Y + G++  A+ LF+    ++D I   SMI GY   G    A  ++  M +     
Sbjct: 490 -IDMYAKCGKIHSAEKLFNNEFHLKDVILCNSMIMGYGMHGHGRYALGVYSRMIEERLKP 548

Query: 296 DAVAWTAMISGLVQNELFVEATYLFMEM-RAHGVPPLNATFSVL 338
           +   + ++++    + L  E   LF  M R H V P +  ++ L
Sbjct: 549 NQTTFVSLLTACSHSGLVEEGKALFHSMERDHDVRPQHKHYACL 592



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 63/208 (30%), Positives = 107/208 (51%), Gaps = 13/208 (6%)

Query: 4   RNHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARR 63
           R   +S +V  T+ +  YSK G I +A  +F  M ++NV+++ AML G  QNG   +A +
Sbjct: 375 RKELESHLVLSTAIVDMYSKCGAIKQATIVFGRMGKKNVITWTAMLVGLSQNGYAEDALK 434

Query: 64  LFEEMPERNV----VSWTAMICGLADAGRVCEARKLFEEMPER----NVVSWNSMVVGLI 115
           LF +M E  V    V+  +++   A  G + + R +           + V  ++++    
Sbjct: 435 LFCQMQEEKVAANSVTLVSLVHCCAHLGSLTKGRTVHAHFIRHGYAFDAVITSALIDMYA 494

Query: 116 RNGELNEARKVFNS-MPIKNVISWNAMIAGYVECCMMGEAIVLFEEM-EER---NVVTWT 170
           + G+++ A K+FN+   +K+VI  N+MI GY        A+ ++  M EER   N  T+ 
Sbjct: 495 KCGKIHSAEKLFNNEFHLKDVILCNSMIMGYGMHGHGRYALGVYSRMIEERLKPNQTTFV 554

Query: 171 SMISGYCRAGEVEEGYCLFRRMPRKNVV 198
           S+++    +G VEEG  LF  M R + V
Sbjct: 555 SLLTACSHSGLVEEGKALFHSMERDHDV 582



 Score = 46.2 bits (108), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 45/190 (23%), Positives = 80/190 (42%), Gaps = 11/190 (5%)

Query: 326 HGVPPLNATFSVLFGAAGATANIDLG-RQIHCVLMKTESESDLILENCLISMYAKCGVID 384
           H  P  N   SV        +N  +  + IH  ++K    ++  L   LI +Y+  G + 
Sbjct: 37  HHAPFFNQAPSVFSSLLHQFSNTLIHVKSIHAQIIKNWVSTESFLAAKLIRVYSDLGFLG 96

Query: 385 NAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACS 444
           +A N+F      +    N+M+ GF  +    E  ++F  M       NS T +  L AC+
Sbjct: 97  HARNVFDQCSLPETAVCNAMIAGFLRNQQHMEVPRLFRMMGSCDIEINSYTCMFALKACT 156

Query: 445 HAGLVSRGWELFNAMFDVYKIQPGPEHYV----SMINLLGRAGKIKEAEEFVLRLPFEPD 500
                  G E+  A      ++ G   ++    SM+N L + G + +A++    +P E D
Sbjct: 157 DLLDDEVGMEIIRA-----AVRRGFHLHLYVGSSMVNFLVKRGYLADAQKVFDGMP-EKD 210

Query: 501 HRIWGALLGA 510
              W +++G 
Sbjct: 211 VVCWNSIIGG 220


>gi|147790104|emb|CAN67593.1| hypothetical protein VITISV_000699 [Vitis vinifera]
          Length = 825

 Score =  278 bits (711), Expect = 6e-72,   Method: Compositional matrix adjust.
 Identities = 194/630 (30%), Positives = 305/630 (48%), Gaps = 64/630 (10%)

Query: 28  DEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNV----VSW------- 76
           D  + +F  M +RNVV++N M+S +++  RL EA ++F  M    +    VS+       
Sbjct: 169 DLVRRVFDTMRKRNVVAWNTMISWYVKTERLIEAFKMFRTMMRMGIRPTPVSFVNVFPAV 228

Query: 77  ------------------------------TAMICGLADAGRVCEARKLFEEMPERNVVS 106
                                         ++ I   A+ G V  AR++F+   ERN   
Sbjct: 229 WRMNDYDNANVLYGLVVKLGSDYVDDFFVVSSAIFMYAELGCVDFAREIFDCCLERNTEV 288

Query: 107 WNSMVVGLIRNGELNEARKVF------NSMPIKNVISWNAMIA-GYVECCMMGEAI--VL 157
           WN+M+ G ++N    EA  +F          + +V   +A+ A   ++   +G  +   +
Sbjct: 289 WNTMIGGYVQNNCPIEAIDLFVQVMESEQFXLDDVTFLSALTAISQLQWLDLGRQLHAYI 348

Query: 158 FEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESL 217
            +      VV   ++I  Y R G +   + +F  M  ++VV+W  M+  F  NG   E L
Sbjct: 349 LKSSTILQVVILNAIIVMYSRCGSIGTSFKVFSNMLERDVVTWNTMVSAFVQNGLDDEGL 408

Query: 218 LLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSM----I 273
           +L  EM+      ++  + +  S+ +      R +E         +R  I +  M    I
Sbjct: 409 MLVFEMQKQGFMVDSVTLTALLSLASNL----RSQEIGKQAHAYLIRHGIQFEGMDGYLI 464

Query: 274 DGYLSVGQVSNAYYLF--HNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPL 331
           D Y   G ++ A  LF  ++  DRD   W AMI+G  QN L  E   +F +M    V P 
Sbjct: 465 DMYAKSGLITTAQQLFEKNSXYDRDEATWNAMIAGYTQNGLSEEGFAVFRKMIEQNVRPN 524

Query: 332 NATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFS 391
             T + +  A      I LG+QIH   ++     ++ +   L+ MY+K G I  A N+F+
Sbjct: 525 AVTLASILPACNPMGTIGLGKQIHGFAIRCFLNQNVFVGTALLDMYSKSGAITYAENVFA 584

Query: 392 NMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSR 451
             + ++ V++ +M++ +  HG+    L +F +ML SG  P+SVTF+ ILSACS+AGLV  
Sbjct: 585 ETLEKNSVTYTTMILSYGQHGMGERALSLFHAMLGSGIKPDSVTFVAILSACSYAGLVDE 644

Query: 452 GWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPD-HRIWGALLGA 510
           G  +F +M   YKIQP  EHY  + ++LGR G++ EA EFV  L  E +  RIWG+LLGA
Sbjct: 645 GLRIFQSMEREYKIQPSSEHYCCVADMLGRVGRVXEAYEFVKGLGEEGNTFRIWGSLLGA 704

Query: 511 CGFCEGNAEIAEHAAKRLLELDPLNAPA--HVVLCNIYAASGRHVEEHKLRMDMGLKGVR 568
           C    G  E+ +  A +LLE++  +     HV+L NIYAA G      ++R +M  KG+ 
Sbjct: 705 CRI-HGEFELGKVVANKLLEMEKGSXLTGYHVLLSNIYAAEGNWDNVDRVRKEMRQKGLM 763

Query: 569 KVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
           K  GCSW+   G +  F+S D    Q AEI
Sbjct: 764 KEAGCSWVEVAGHVNCFMSRDHKHPQCAEI 793



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 127/502 (25%), Positives = 215/502 (42%), Gaps = 88/502 (17%)

Query: 49  LSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEM-----PERN 103
           LS   + G   +A  LF+ +P    V W  +I G        +A   +  M     P+ +
Sbjct: 44  LSHLCRQGHPHQALHLFDSIPRPTTVLWNTIIIGFICNNMPIDALLFYARMRASPSPKFD 103

Query: 104 VVSWNSMVVGLIRNGELNEAR----KVFNSMPIKNVISWNAMIAGYVECCM----MGEAI 155
             +++S +    +   L   +     V  S    + I +N+++  Y  C      +G A 
Sbjct: 104 SYTFSSTLKACAQARSLKLGKALHCHVLRSHFGSSRIVYNSLLNMYSTCLTEVPYLGTAY 163

Query: 156 ---------VLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNV----VSWTA 202
                     +F+ M +RNVV W +MIS Y +   + E + +FR M R  +    VS+  
Sbjct: 164 DFNNCDLVRRVFDTMRKRNVVAWNTMISWYVKTERLIEAFKMFRTMMRMGIRPTPVSFVN 223

Query: 203 MIGGFAW--NGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDT 260
           +     W  N +   ++L  + +K   D  ++  V S  S I  Y   G ++ A+ +FD 
Sbjct: 224 VFPA-VWRMNDYDNANVLYGLVVKLGSDYVDDFFVVS--SAIFMYAELGCVDFAREIFDC 280

Query: 261 VPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLF 320
              R+   W +MI GY                               VQN   +EA  LF
Sbjct: 281 CLERNTEVWNTMIGGY-------------------------------VQNNCPIEAIDLF 309

Query: 321 ME-MRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAK 379
           ++ M +      + TF     A      +DLGRQ+H  ++K+ +   +++ N +I MY++
Sbjct: 310 VQVMESEQFXLDDVTFLSALTAISQLQWLDLGRQLHAYILKSSTILQVVILNAIIVMYSR 369

Query: 380 CGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGI 439
           CG I  ++ +FSNM+ RD+V+WN+MV  F  +GL +E L +   M + G   +SVT   +
Sbjct: 370 CGSIGTSFKVFSNMLERDVVTWNTMVSAFVQNGLDDEGLMLVFEMQKQGFMVDSVTLTAL 429

Query: 440 LSACS-----------HAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEA 488
           LS  S           HA L+  G + F  M D Y           +I++  ++G I  A
Sbjct: 430 LSLASNLRSQEIGKQAHAYLIRHGIQ-FEGM-DGY-----------LIDMYAKSGLITTA 476

Query: 489 EE-FVLRLPFEPDHRIWGALLG 509
           ++ F     ++ D   W A++ 
Sbjct: 477 QQLFEKNSXYDRDEATWNAMIA 498



 Score = 99.4 bits (246), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 111/492 (22%), Positives = 206/492 (41%), Gaps = 90/492 (18%)

Query: 14  LTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPER-- 71
           ++S+I  Y++ G +D A+ +F    +RN   +N M+ G++QN    EA  LF ++ E   
Sbjct: 258 VSSAIFMYAELGCVDFAREIFDCCLERNTEVWNTMIGGYVQNNCPIEAIDLFVQVMESEQ 317

Query: 72  ---NVVSWTAMICGLA-----DAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEA 123
              + V++ + +  ++     D GR   A  + +      VV  N+++V   R G +  +
Sbjct: 318 FXLDDVTFLSALTAISQLQWLDLGRQLHAY-ILKSSTILQVVILNAIIVMYSRCGSIGTS 376

Query: 124 RKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEER----NVVTWTSMIS----- 174
            KVF++M  ++V++WN M++ +V+  +  E ++L  EM+++    + VT T+++S     
Sbjct: 377 FKVFSNMLERDVVTWNTMVSAFVQNGLDDEGLMLVFEMQKQGFMVDSVTLTALLSLASNL 436

Query: 175 -----------------------------GYCRAGEVEEGYCLFRR--MPRKNVVSWTAM 203
                                         Y ++G +     LF +     ++  +W AM
Sbjct: 437 RSQEIGKQAHAYLIRHGIQFEGMDGYLIDMYAKSGLITTAQQLFEKNSXYDRDEATWNAM 496

Query: 204 IGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQS----CNSMINGYIRFGRLEEA----- 254
           I G+  NG  +E   +F +M       N   + S    CN M  G I  G+         
Sbjct: 497 IAGYTQNGLSEEGFAVFRKMIEQNVRPNAVTLASILPACNPM--GTIGLGKQIHGFAIRC 554

Query: 255 ---QNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNE 311
              QN+F           T+++D Y   G ++ A  +F    ++++V +T MI    Q+ 
Sbjct: 555 FLNQNVF---------VGTALLDMYSKSGAITYAENVFAETLEKNSVTYTTMILSYGQHG 605

Query: 312 LFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILEN 371
           +   A  LF  M   G+ P + TF  +  A      +D G +I       E E  +   +
Sbjct: 606 MGERALSLFHAMLGSGIKPDSVTFVAILSACSYAGLVDEGLRI---FQSMEREYKIQPSS 662

Query: 372 ----CLISMYAKCGVIDNAYNIFSNM--VSRDLVSWNSMVMGFSHHG-------LANETL 418
               C+  M  + G +  AY     +         W S++     HG       +AN+ L
Sbjct: 663 EHYCCVADMLGRVGRVXEAYEFVKGLGEEGNTFRIWGSLLGACRIHGEFELGKVVANKLL 722

Query: 419 KVFESMLESGTH 430
           ++ +    +G H
Sbjct: 723 EMEKGSXLTGYH 734



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 92/339 (27%), Positives = 150/339 (44%), Gaps = 54/339 (15%)

Query: 11  VVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPE 70
           VV L + I  YS+ G I  +  +F  M +R+VV++N M+S F+QNG   E   L  EM +
Sbjct: 357 VVILNAIIVMYSRCGSIGTSFKVFSNMLERDVVTWNTMVSAFVQNGLDDEGLMLVFEMQK 416

Query: 71  R----NVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLI----RNGELNE 122
           +    + V+ TA++  LA   R  E  K       R+ + +  M   LI    ++G +  
Sbjct: 417 QGFMVDSVTLTALL-SLASNLRSQEIGKQAHAYLIRHGIQFEGMDGYLIDMYAKSGLITT 475

Query: 123 ARKVF--NSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNV----VTWTSMISGY 176
           A+++F  NS   ++  +WNAMIAGY +  +  E   +F +M E+NV    VT  S++   
Sbjct: 476 AQQLFEKNSXYDRDEATWNAMIAGYTQNGLSEEGFAVFRKMIEQNVRPNAVTLASILPAC 535

Query: 177 CRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQ 236
              G +  G                  I GFA   F  +                  NV 
Sbjct: 536 NPMGTIGLG----------------KQIHGFAIRCFLNQ------------------NVF 561

Query: 237 SCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDR- 295
              ++++ Y + G +  A+N+F     ++ +++T+MI  Y   G    A  LFH M    
Sbjct: 562 VGTALLDMYSKSGAITYAENVFAETLEKNSVTYTTMILSYGQHGMGERALSLFHAMLGSG 621

Query: 296 ---DAVAWTAMISGLVQNELFVEATYLFMEM-RAHGVPP 330
              D+V + A++S      L  E   +F  M R + + P
Sbjct: 622 IKPDSVTFVAILSACSYAGLVDEGLRIFQSMEREYKIQP 660


>gi|356509847|ref|XP_003523656.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
            [Glycine max]
          Length = 1611

 Score =  278 bits (711), Expect = 6e-72,   Method: Compositional matrix adjust.
 Identities = 165/525 (31%), Positives = 274/525 (52%), Gaps = 31/525 (5%)

Query: 86   AGRVCEARKLFEEMPERNVVSWNSMVVG----------------LIRNGELNEARKVFNS 129
            AG V  AR +F +M E +++SWN+M+ G                L+R+  L +   V + 
Sbjct: 983  AGSVSRARSVFGQMNEVDLISWNTMISGCTLSGLEECSVGMFVHLLRDSLLPDQFTVASV 1042

Query: 130  MPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLF 189
            +   + +     +A  +  C M   +VL       +    T++I  Y + G++EE   LF
Sbjct: 1043 LRACSSLEGGYYLATQIHACAMKAGVVL-------DSFVSTALIDVYSKRGKMEEAEFLF 1095

Query: 190  RRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFG 249
                  ++ SW A++ G+  +G   ++L L+I M+   +  +   + +      G +   
Sbjct: 1096 VNQDGFDLASWNAIMHGYIVSGDFPKALRLYILMQESGERSDQITLVNAAKAAGGLVG-- 1153

Query: 250  RLEEAQNLFDTVPVR----DEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMIS 305
             L++ + +   V  R    D    + ++D YL  G++ +A  +F  +P  D VAWT MIS
Sbjct: 1154 -LKQGKQIHAVVVKRGFNLDLFVTSGVLDMYLKCGEMESARRVFSEIPSPDDVAWTTMIS 1212

Query: 306  GLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESES 365
            G V+N     A + + +MR   V P   TF+ L  A      ++ GRQIH  ++K     
Sbjct: 1213 GCVENGQEEHALFTYHQMRLSKVQPDEYTFATLVKACSLLTALEQGRQIHANIVKLNCAF 1272

Query: 366  DLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESML 425
            D  +   L+ MYAKCG I++A  +F    +R + SWN+M++G + HG A E L+ F+ M 
Sbjct: 1273 DPFVMTSLVDMYAKCGNIEDARGLFKRTNTRRIASWNAMIVGLAQHGNAKEALQFFKYMK 1332

Query: 426  ESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKI 485
              G  P+ VTF+G+LSACSH+GLVS  +E F +M   Y I+P  EHY  +++ L RAG+I
Sbjct: 1333 SRGVMPDRVTFIGVLSACSHSGLVSEAYENFYSMQKNYGIEPEIEHYSCLVDALSRAGRI 1392

Query: 486  KEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNI 545
            +EAE+ +  +PFE    ++  LL AC   + + E  +  A++LL L+P ++ A+V+L N+
Sbjct: 1393 EEAEKVISSMPFEASASMYRTLLNACR-VQVDRETGKRVAEKLLALEPSDSAAYVLLSNV 1451

Query: 546  YAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDK 590
            YAA+ +       R  M    V+K PG SW+     + +F++GD+
Sbjct: 1452 YAAANQWENVASARNMMRKVNVKKDPGFSWVDLKNKVHLFVAGDR 1496



 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 127/509 (24%), Positives = 226/509 (44%), Gaps = 49/509 (9%)

Query: 21   YSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMI 80
            Y+K G I EA+ LF  M  R+VV +N M+  ++      EA  LF E            +
Sbjct: 805  YAKFGLIREARVLFDGMAVRDVVLWNVMMKAYVDTCLEYEAMLLFSEFHRTGFRPDDVTL 864

Query: 81   CGLADAGRVCEARKLFEEMPE---------------RNVVSWNSMVVGLIRNGELNEARK 125
              L+   RV + +K   E+ +                +V+ WN  +   ++ GE  EA  
Sbjct: 865  RTLS---RVVKCKKNILELKQFKAYATKLFMYDDDGSDVIVWNKALSRFLQRGEAWEAVD 921

Query: 126  VFNSMPIKNVISWNAM--------IAGYVECCMMGEAI--VLFEEMEERNVVTWTSMISG 175
             F  M I + ++ + +        +AG + C  +G+ I  ++     ++ V     +I+ 
Sbjct: 922  CFVDM-INSRVACDGLTFVVMLTVVAG-LNCLELGKQIHGIVMRSGLDQVVSVGNCLINM 979

Query: 176  YCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEM---KGICDNGNN 232
            Y +AG V     +F +M   +++SW  MI G   +G  + S+ +F+ +     + D    
Sbjct: 980  YVKAGSVSRARSVFGQMNEVDLISWNTMISGCTLSGLEECSVGMFVHLLRDSLLPDQFTV 1039

Query: 233  CNV-QSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHN 291
             +V ++C+S+  GY    ++           V D    T++ID Y   G++  A +LF N
Sbjct: 1040 ASVLRACSSLEGGYYLATQIHACA--MKAGVVLDSFVSTALIDVYSKRGKMEEAEFLFVN 1097

Query: 292  MPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLG 351
                D  +W A++ G + +  F +A  L++ M+  G      T      AAG    +  G
Sbjct: 1098 QDGFDLASWNAIMHGYIVSGDFPKALRLYILMQESGERSDQITLVNAAKAAGGLVGLKQG 1157

Query: 352  RQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHH 411
            +QIH V++K     DL + + ++ MY KCG +++A  +FS + S D V+W +M+ G   +
Sbjct: 1158 KQIHAVVVKRGFNLDLFVTSGVLDMYLKCGEMESARRVFSEIPSPDDVAWTTMISGCVEN 1217

Query: 412  GLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWEL------FNAMFDVYKI 465
            G     L  +  M  S   P+  TF  ++ ACS    + +G ++       N  FD    
Sbjct: 1218 GQEEHALFTYHQMRLSKVQPDEYTFATLVKACSLLTALEQGRQIHANIVKLNCAFD---- 1273

Query: 466  QPGPEHYVSMINLLGRAGKIKEAEEFVLR 494
               P    S++++  + G I++A     R
Sbjct: 1274 ---PFVMTSLVDMYAKCGNIEDARGLFKR 1299



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 128/555 (23%), Positives = 227/555 (40%), Gaps = 110/555 (19%)

Query: 38   PQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPE--RNVVSWTAMICGL-ADAGRVCEARK 94
            P R V   N +++ + + G LS AR+LF+  P+  R++V+W A++  L A A +  +   
Sbjct: 689  PDRFVT--NNLITMYAKCGSLSSARKLFDTTPDTNRDLVTWNAILSALAAHADKSHDGFH 746

Query: 95   LFEEMPERNVVS-----------------------------------WNSMVVGLIRN-- 117
            LF  +  R+VVS                                   W+  V G + N  
Sbjct: 747  LF-RLLRRSVVSTTRHTLAPVFKMCLLSASPSASESLHGYAVKIGLQWDVFVAGALVNIY 805

Query: 118  ---GELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMIS 174
               G + EAR +F+ M +++V+ WN M+  YV+ C+  EA++LF E            + 
Sbjct: 806  AKFGLIREARVLFDGMAVRDVVLWNVMMKAYVDTCLEYEAMLLFSEFHRTGFRPDDVTLR 865

Query: 175  GYCRAGEVEEGYCLFRRMPR------------KNVVSWTAMIGGFAWNGFHKESLLLFIE 222
               R  + ++     ++                +V+ W   +  F   G   E++  F++
Sbjct: 866  TLSRVVKCKKNILELKQFKAYATKLFMYDDDGSDVIVWNKALSRFLQRGEAWEAVDCFVD 925

Query: 223  M---KGICDN-----------GNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEIS 268
            M   +  CD            G NC        I+G +    L++  ++ +         
Sbjct: 926  MINSRVACDGLTFVVMLTVVAGLNC--LELGKQIHGIVMRSGLDQVVSVGNC-------- 975

Query: 269  WTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFME-MRAHG 327
               +I+ Y+  G VS A  +F  M + D ++W  MISG   + L   +  +F+  +R   
Sbjct: 976  ---LINMYVKAGSVSRARSVFGQMNEVDLISWNTMISGCTLSGLEECSVGMFVHLLRDSL 1032

Query: 328  VPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAY 387
            +P      SVL   +       L  QIH   MK     D  +   LI +Y+K G ++ A 
Sbjct: 1033 LPDQFTVASVLRACSSLEGGYYLATQIHACAMKAGVVLDSFVSTALIDVYSKRGKMEEAE 1092

Query: 388  NIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACS--- 444
             +F N    DL SWN+++ G+   G   + L+++  M ESG   + +T +    A     
Sbjct: 1093 FLFVNQDGFDLASWNAIMHGYIVSGDFPKALRLYILMQESGERSDQITLVNAAKAAGGLV 1152

Query: 445  --------HAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLP 496
                    HA +V RG+ L     D++ +  G      ++++  + G+++ A      +P
Sbjct: 1153 GLKQGKQIHAVVVKRGFNL-----DLF-VTSG------VLDMYLKCGEMESARRVFSEIP 1200

Query: 497  FEPDHRIWGALLGAC 511
              PD   W  ++  C
Sbjct: 1201 -SPDDVAWTTMISGC 1214



 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 68/258 (26%), Positives = 113/258 (43%), Gaps = 49/258 (18%)

Query: 15   TSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLF---EEMPER 71
            T+ I  YSKRG ++EA+ LF      ++ S+NA++ G++ +G   +A RL+   +E  ER
Sbjct: 1076 TALIDVYSKRGKMEEAEFLFVNQDGFDLASWNAIMHGYIVSGDFPKALRLYILMQESGER 1135

Query: 72   -------NVVSWTAMICGLADA-----------------------------GRVCEARKL 95
                   N       + GL                                G +  AR++
Sbjct: 1136 SDQITLVNAAKAAGGLVGLKQGKQIHAVVVKRGFNLDLFVTSGVLDMYLKCGEMESARRV 1195

Query: 96   FEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAI 155
            F E+P  + V+W +M+ G + NG+   A   ++ M +  V       A  V+ C +  A+
Sbjct: 1196 FSEIPSPDDVAWTTMISGCVENGQEEHALFTYHQMRLSKVQPDEYTFATLVKACSLLTAL 1255

Query: 156  VLFEEMEERNVV---------TWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGG 206
                ++   N+V           TS++  Y + G +E+   LF+R   + + SW AMI G
Sbjct: 1256 EQGRQIHA-NIVKLNCAFDPFVMTSLVDMYAKCGNIEDARGLFKRTNTRRIASWNAMIVG 1314

Query: 207  FAWNGFHKESLLLFIEMK 224
             A +G  KE+L  F  MK
Sbjct: 1315 LAQHGNAKEALQFFKYMK 1332



 Score = 89.4 bits (220), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 96/429 (22%), Positives = 175/429 (40%), Gaps = 56/429 (13%)

Query: 18   ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEE------MPER 71
            I  Y K G +  A+++F  M + +++S+N M+SG   +G    +  +F        +P++
Sbjct: 977  INMYVKAGSVSRARSVFGQMNEVDLISWNTMISGCTLSGLEECSVGMFVHLLRDSLLPDQ 1036

Query: 72   NVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLI----RNGELNEARKVF 127
              V+     C   + G    A ++     +  VV  + +   LI    + G++ EA  +F
Sbjct: 1037 FTVASVLRACSSLEGGYYL-ATQIHACAMKAGVVLDSFVSTALIDVYSKRGKMEEAEFLF 1095

Query: 128  NSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEER----------------------- 164
             +    ++ SWNA++ GY+      +A+ L+  M+E                        
Sbjct: 1096 VNQDGFDLASWNAIMHGYIVSGDFPKALRLYILMQESGERSDQITLVNAAKAAGGLVGLK 1155

Query: 165  ----------------NVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFA 208
                            ++   + ++  Y + GE+E    +F  +P  + V+WT MI G  
Sbjct: 1156 QGKQIHAVVVKRGFNLDLFVTSGVLDMYLKCGEMESARRVFSEIPSPDDVAWTTMISGCV 1215

Query: 209  WNGFHKESLLLFIEM---KGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRD 265
             NG  + +L  + +M   K   D      +    S++   +  GR   A N+       D
Sbjct: 1216 ENGQEEHALFTYHQMRLSKVQPDEYTFATLVKACSLLTA-LEQGRQIHA-NIVKLNCAFD 1273

Query: 266  EISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRA 325
                TS++D Y   G + +A  LF     R   +W AMI GL Q+    EA   F  M++
Sbjct: 1274 PFVMTSLVDMYAKCGNIEDARGLFKRTNTRRIASWNAMIVGLAQHGNAKEALQFFKYMKS 1333

Query: 326  HGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTES-ESDLILENCLISMYAKCGVID 384
             GV P   TF  +  A   +  +    +    + K    E ++   +CL+   ++ G I+
Sbjct: 1334 RGVMPDRVTFIGVLSACSHSGLVSEAYENFYSMQKNYGIEPEIEHYSCLVDALSRAGRIE 1393

Query: 385  NAYNIFSNM 393
             A  + S+M
Sbjct: 1394 EAEKVISSM 1402



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 42/129 (32%), Positives = 69/129 (53%), Gaps = 9/129 (6%)

Query: 14   LTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNV 73
            +TS +  Y+K G I++A+ LF+    R + S+NAM+ G  Q+G   EA + F+ M  R V
Sbjct: 1277 MTSLVDMYAKCGNIEDARGLFKRTNTRRIASWNAMIVGLAQHGNAKEALQFFKYMKSRGV 1336

Query: 74   ----VSWTAMICGLADAGRVCEARKLFEEMP-----ERNVVSWNSMVVGLIRNGELNEAR 124
                V++  ++   + +G V EA + F  M      E  +  ++ +V  L R G + EA 
Sbjct: 1337 MPDRVTFIGVLSACSHSGLVSEAYENFYSMQKNYGIEPEIEHYSCLVDALSRAGRIEEAE 1396

Query: 125  KVFNSMPIK 133
            KV +SMP +
Sbjct: 1397 KVISSMPFE 1405



 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 51/221 (23%), Positives = 89/221 (40%), Gaps = 48/221 (21%)

Query: 21   YSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEM------PERNVV 74
            Y K G ++ A+ +F  +P  + V++  M+SG ++NG+   A   + +M      P+    
Sbjct: 1183 YLKCGEMESARRVFSEIPSPDDVAWTTMISGCVENGQEEHALFTYHQMRLSKVQPDEYTF 1242

Query: 75   SWTAMICGL---------------------------------ADAGRVCEARKLFEEMPE 101
            +     C L                                 A  G + +AR LF+    
Sbjct: 1243 ATLVKACSLLTALEQGRQIHANIVKLNCAFDPFVMTSLVDMYAKCGNIEDARGLFKRTNT 1302

Query: 102  RNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECC----MMGEAIVL 157
            R + SWN+M+VGL ++G   EA + F  M  + V+       G +  C    ++ EA   
Sbjct: 1303 RRIASWNAMIVGLAQHGNAKEALQFFKYMKSRGVMPDRVTFIGVLSACSHSGLVSEAYEN 1362

Query: 158  FEEME-----ERNVVTWTSMISGYCRAGEVEEGYCLFRRMP 193
            F  M+     E  +  ++ ++    RAG +EE   +   MP
Sbjct: 1363 FYSMQKNYGIEPEIEHYSCLVDALSRAGRIEEAEKVISSMP 1403


>gi|326529685|dbj|BAK04789.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 879

 Score =  278 bits (711), Expect = 6e-72,   Method: Compositional matrix adjust.
 Identities = 194/639 (30%), Positives = 311/639 (48%), Gaps = 66/639 (10%)

Query: 18  ITKYSKRGFIDEAKALF-QLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEM------PE 70
           +  Y   GF+DEA+ +F +    RN VS+N M+S F++N R S+A  LF EM      P 
Sbjct: 142 VAMYGGFGFVDEARRVFDEAARDRNAVSWNGMMSAFVKNDRCSDAVELFGEMVWSGVRPN 201

Query: 71  RNVVSWTAMIC-GLAD--AGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVF 127
               S     C G  D  AGR   A  +     +++V + N++V    + G+++ A  VF
Sbjct: 202 EFGFSCVVNACTGSRDLEAGRKVHA-MVVRTGYDKDVFTANALVDMYSKLGDIHMAALVF 260

Query: 128 NSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEER----NVVTWTS------------ 171
             +P  +V+SWNA I+G V       A+ L  +M+      NV T +S            
Sbjct: 261 GKVPKTDVVSWNAFISGCVLHGHDQHALELLLQMKSSGLVPNVFTLSSILKACAGAGAGA 320

Query: 172 -------------------------MISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGG 206
                                    ++  Y + G +++   +F  +PRK+++ W A+I G
Sbjct: 321 FALGRQIHGFMIKACADSDDYIGVALVDMYAKYGLLDDARKVFEWIPRKDLLLWNALISG 380

Query: 207 FAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDE 266
            +  G H ESL LF  M+     G++ N  +  +++        LE   +      + ++
Sbjct: 381 CSHGGCHGESLSLFCRMR---KEGSDINRTTLAAVLKST---ASLEAISDTTQVHALAEK 434

Query: 267 ISWTS-------MIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYL 319
           I + S       +ID Y     +  A  +F      + +A+T+MI+ L Q +   +A  L
Sbjct: 435 IGFLSDSHVVNGLIDSYWKCNCLRYANKVFEEHSSDNIIAFTSMITALSQCDHGEDAIKL 494

Query: 320 FMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAK 379
           FMEM   G+ P     S L  A  + +  + G+Q+H  L+K +  +D+   N L+  YAK
Sbjct: 495 FMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRKFMTDVFAGNALVYTYAK 554

Query: 380 CGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGI 439
           CG I++A   FS +  + +VSW++M+ G + HG     L VF  M++    PN +T   +
Sbjct: 555 CGSIEDADLAFSGLPDKGVVSWSAMIGGLAQHGHGKRALDVFRRMVDERIAPNHITLTSV 614

Query: 440 LSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEP 499
           L AC+HAGLV      F++M +++ I    EHY  MI+LLGRAGK+ +A E V  +PFE 
Sbjct: 615 LCACNHAGLVDEAKGYFSSMKEMFGIDRTEEHYSCMIDLLGRAGKLDDAMELVNSMPFEA 674

Query: 500 DHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLR 559
           +  +WGALL A      + E+ + AA++L  L+P  +  HV+L N YA++G   E  K+R
Sbjct: 675 NAAVWGALLAA-SRVHRDPELGKLAAEKLFVLEPEKSGTHVLLANTYASAGMWDEVAKVR 733

Query: 560 MDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
             M    V+K P  SW+     +  F+ GDK   +  +I
Sbjct: 734 KLMKDSKVKKEPAMSWVELKDRVHTFIVGDKSHPRARDI 772



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 141/547 (25%), Positives = 234/547 (42%), Gaps = 59/547 (10%)

Query: 92  ARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCM- 150
           AR++F+E P+   VSW+S+V     N    EA   F +M  + V      +   ++C   
Sbjct: 56  ARRVFDETPDPCHVSWSSLVTAYSNNALPREALAAFRAMRARGVRCNEFALPIVLKCAPD 115

Query: 151 --MGEAI--VLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPR-KNVVSWTAMIG 205
             +G  +  V        ++    ++++ Y   G V+E   +F    R +N VSW  M+ 
Sbjct: 116 AGLGVQVHAVAVSTGLSGDIFVANALVAMYGGFGFVDEARRVFDEAARDRNAVSWNGMMS 175

Query: 206 GFAWNGFHKESLLLFIEM--KGICDN--GNNCNVQSCNSMINGYIRFGRLEEAQNLFDTV 261
            F  N    +++ LF EM   G+  N  G +C V +C    +  +  GR   A  +  T 
Sbjct: 176 AFVKNDRCSDAVELFGEMVWSGVRPNEFGFSCVVNACTGSRD--LEAGRKVHAM-VVRTG 232

Query: 262 PVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFM 321
             +D  +  +++D Y  +G +  A  +F  +P  D V+W A ISG V +     A  L +
Sbjct: 233 YDKDVFTANALVDMYSKLGDIHMAALVFGKVPKTDVVSWNAFISGCVLHGHDQHALELLL 292

Query: 322 EMRAHGVPPLNATFSVLFG--AAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAK 379
           +M++ G+ P   T S +    A        LGRQIH  ++K  ++SD  +   L+ MYAK
Sbjct: 293 QMKSSGLVPNVFTLSSILKACAGAGAGAFALGRQIHGFMIKACADSDDYIGVALVDMYAK 352

Query: 380 CGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGI 439
            G++D+A  +F  +  +DL+ WN+++ G SH G   E+L +F  M + G+  N  T   +
Sbjct: 353 YGLLDDARKVFEWIPRKDLLLWNALISGCSHGGCHGESLSLFCRMRKEGSDINRTTLAAV 412

Query: 440 LSACSHAGLVSRGWE---------------LFNAMFDV--------YKIQPGPEH----- 471
           L + +    +S   +               + N + D         Y  +   EH     
Sbjct: 413 LKSTASLEAISDTTQVHALAEKIGFLSDSHVVNGLIDSYWKCNCLRYANKVFEEHSSDNI 472

Query: 472 --YVSMINLLGRAGKIKEAEEF---VLRLPFEPDHRIWGALLGACGFC---EGNAEIAEH 523
             + SMI  L +    ++A +    +LR   EPD  +  +LL AC      E   ++  H
Sbjct: 473 IAFTSMITALSQCDHGEDAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAH 532

Query: 524 AAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQ 583
             KR    D     A   L   YA  G  +E+     D+   G+      SW    GG+ 
Sbjct: 533 LIKRKFMTDVFAGNA---LVYTYAKCGS-IED----ADLAFSGLPDKGVVSWSAMIGGLA 584

Query: 584 MFLSGDK 590
               G +
Sbjct: 585 QHGHGKR 591



 Score = 52.4 bits (124), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 37/117 (31%), Positives = 54/117 (46%), Gaps = 6/117 (5%)

Query: 334 TFSVLFGAAGATANIDLGRQIHCVLMKTESESDLI--LENCLISMYAKCGVIDNAYNIFS 391
           + S L     AT ++ LG  IH  L+K    S L+    N L+S Y+KC +  +A  +F 
Sbjct: 6   SISPLLTRYAATQSLFLGAHIHAHLLK----SGLLHAFRNHLLSFYSKCRLPGSARRVFD 61

Query: 392 NMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGL 448
                  VSW+S+V  +S++ L  E L  F +M   G   N      +L     AGL
Sbjct: 62  ETPDPCHVSWSSLVTAYSNNALPREALAAFRAMRARGVRCNEFALPIVLKCAPDAGL 118


>gi|224079057|ref|XP_002305733.1| predicted protein [Populus trichocarpa]
 gi|222848697|gb|EEE86244.1| predicted protein [Populus trichocarpa]
          Length = 571

 Score =  278 bits (711), Expect = 6e-72,   Method: Compositional matrix adjust.
 Identities = 156/490 (31%), Positives = 259/490 (52%), Gaps = 46/490 (9%)

Query: 118 GELNEARKVFNSMPIKNVISW-----NAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSM 172
           G+++  R V  S  +K  + W     N ++  Y +C ++  AI++F+ M  R VVTWTS+
Sbjct: 12  GDVSLGRAVHGS-GVKACVHWKTTFCNTLLDMYAKCGVLDGAILVFDLMSVRTVVTWTSL 70

Query: 173 ISGYCRAGEVEEGYCLFRRMPRK----NVVSWTAMIGGFAWNGFHKESLLLFIEMKGICD 228
           I+ Y R G  +E   LF  M R+    ++ + T ++   A NG  +    +   ++   +
Sbjct: 71  IAAYAREGLSDEAIRLFHEMDREGVSPDIFTITTVLHACACNGSLENGKDVHNYIR---E 127

Query: 229 NGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYL 288
           N    N+  CN++++ Y + G +E+A ++F  +PV+D ISW +MI GY      + A  L
Sbjct: 128 NDMQSNIFVCNALMDMYAKCGSMEDANSVFLEMPVKDIISWNTMIGGYSKNSLPNEALSL 187

Query: 289 FHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANI 348
           F +M                            +EM+     P   T + +  A  + A++
Sbjct: 188 FGDM---------------------------VLEMK-----PDGTTLACILPACASLASL 215

Query: 349 DLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGF 408
           D G+++H  +++    SD  + N L+ MY KCGV   A  +F  + ++DL++W  M+ G+
Sbjct: 216 DRGKEVHGHILRNGFFSDQQVANALVDMYVKCGVPVLARLLFDMIPTKDLITWTVMIAGY 275

Query: 409 SHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPG 468
             HG  N  +  F  M ++G  P+ V+F+ IL ACSH+GL+  GW  FN M D   ++P 
Sbjct: 276 GMHGFGNNAITTFNEMRQAGIEPDEVSFISILYACSHSGLLDEGWRFFNVMQDECNVKPK 335

Query: 469 PEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRL 528
            EHY  +++LL R+GK+  A +F+  +P EPD  IWGALL  C     + ++AE  A+ +
Sbjct: 336 LEHYACIVDLLARSGKLAMAYKFIKSMPIEPDATIWGALLSGCRI-HHDVKLAEKVAEHV 394

Query: 529 LELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSG 588
            EL+P N   +V+L N YA + +  E  KLR  +G +G++K PGCSW+     + +FL+G
Sbjct: 395 FELEPENTGYYVLLANTYAEAEKWEEVKKLRQKIGRRGLKKNPGCSWIEVKSKVHIFLAG 454

Query: 589 DKIPAQVAEI 598
           +    Q  +I
Sbjct: 455 NSSHPQAKKI 464



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 102/396 (25%), Positives = 170/396 (42%), Gaps = 51/396 (12%)

Query: 46  NAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPER--- 102
           N +L  + + G L  A  +F+ M  R VV+WT++I   A  G   EA +LF EM      
Sbjct: 37  NTLLDMYAKCGVLDGAILVFDLMSVRTVVTWTSLIAAYAREGLSDEAIRLFHEMDREGVS 96

Query: 103 -NVVSWNSMVVGLIRNGELNEARKVFNSMP----IKNVISWNAMIAGYVECCMMGEAIVL 157
            ++ +  +++     NG L   + V N +       N+   NA++  Y +C  M +A  +
Sbjct: 97  PDIFTITTVLHACACNGSLENGKDVHNYIRENDMQSNIFVCNALMDMYAKCGSMEDANSV 156

Query: 158 FEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMP---RKNVVSWTAMIGGFAWNGFHK 214
           F EM  +++++W +MI GY +     E   LF  M    + +  +   ++   A      
Sbjct: 157 FLEMPVKDIISWNTMIGGYSKNSLPNEALSLFGDMVLEMKPDGTTLACILPACA----SL 212

Query: 215 ESLLLFIEMKG-ICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMI 273
            SL    E+ G I  NG   + Q  N++++ Y++ G    A+ LFD +P +D I+WT MI
Sbjct: 213 ASLDRGKEVHGHILRNGFFSDQQVANALVDMYVKCGVPVLARLLFDMIPTKDLITWTVMI 272

Query: 274 DGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNA 333
            GY   G  +NA   F+                               EMR  G+ P   
Sbjct: 273 AGYGMHGFGNNAITTFN-------------------------------EMRQAGIEPDEV 301

Query: 334 TFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILEN--CLISMYAKCGVIDNAYNIFS 391
           +F  +  A   +  +D G +   V M+ E      LE+  C++ + A+ G +  AY    
Sbjct: 302 SFISILYACSHSGLLDEGWRFFNV-MQDECNVKPKLEHYACIVDLLARSGKLAMAYKFIK 360

Query: 392 NM-VSRDLVSWNSMVMGFSHHGLANETLKVFESMLE 426
           +M +  D   W +++ G   H       KV E + E
Sbjct: 361 SMPIEPDATIWGALLSGCRIHHDVKLAEKVAEHVFE 396



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 80/343 (23%), Positives = 145/343 (42%), Gaps = 65/343 (18%)

Query: 21  YSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMP----------- 69
           Y+K G +D A  +F LM  R VV++ ++++ + + G   EA RLF EM            
Sbjct: 43  YAKCGVLDGAILVFDLMSVRTVVTWTSLIAAYAREGLSDEAIRLFHEMDREGVSPDIFTI 102

Query: 70  ----------------------------ERNVVSWTAMICGLADAGRVCEARKLFEEMPE 101
                                       + N+    A++   A  G + +A  +F EMP 
Sbjct: 103 TTVLHACACNGSLENGKDVHNYIRENDMQSNIFVCNALMDMYAKCGSMEDANSVFLEMPV 162

Query: 102 RNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMM-----GEAIV 156
           ++++SWN+M+ G  +N   NEA  +F  M ++       +      C  +     G+ + 
Sbjct: 163 KDIISWNTMIGGYSKNSLPNEALSLFGDMVLEMKPDGTTLACILPACASLASLDRGKEVH 222

Query: 157 -------LFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAW 209
                   F + +  N     +++  Y + G       LF  +P K++++WT MI G+  
Sbjct: 223 GHILRNGFFSDQQVAN-----ALVDMYVKCGVPVLARLLFDMIPTKDLITWTVMIAGYGM 277

Query: 210 NGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLF----DTVPVRD 265
           +GF   ++  F EM+     G   +  S  S++      G L+E    F    D   V+ 
Sbjct: 278 HGFGNNAITTFNEMR---QAGIEPDEVSFISILYACSHSGLLDEGWRFFNVMQDECNVKP 334

Query: 266 EIS-WTSMIDGYLSVGQVSNAYYLFHNMP-DRDAVAWTAMISG 306
           ++  +  ++D     G+++ AY    +MP + DA  W A++SG
Sbjct: 335 KLEHYACIVDLLARSGKLAMAYKFIKSMPIEPDATIWGALLSG 377



 Score = 82.4 bits (202), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 57/226 (25%), Positives = 103/226 (45%), Gaps = 6/226 (2%)

Query: 338 LFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRD 397
           +  A     ++ LGR +H   +K          N L+ MYAKCGV+D A  +F  M  R 
Sbjct: 4   ILQACANCGDVSLGRAVHGSGVKACVHWKTTFCNTLLDMYAKCGVLDGAILVFDLMSVRT 63

Query: 398 LVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFN 457
           +V+W S++  ++  GL++E +++F  M   G  P+  T   +L AC+  G +  G ++ N
Sbjct: 64  VVTWTSLIAAYAREGLSDEAIRLFHEMDREGVSPDIFTITTVLHACACNGSLENGKDVHN 123

Query: 458 AMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGN 517
            + +   +Q       +++++  + G +++A    L +P + D   W  ++G        
Sbjct: 124 YIRE-NDMQSNIFVCNALMDMYAKCGSMEDANSVFLEMPVK-DIISWNTMIGGYSKNSLP 181

Query: 518 AEIAEHAAKRLLELDPLNAPAHVVL--CNIYAA--SGRHVEEHKLR 559
            E        +LE+ P       +L  C   A+   G+ V  H LR
Sbjct: 182 NEALSLFGDMVLEMKPDGTTLACILPACASLASLDRGKEVHGHILR 227


>gi|225464633|ref|XP_002274427.1| PREDICTED: pentatricopeptide repeat-containing protein At5g52850,
           chloroplastic [Vitis vinifera]
 gi|302143764|emb|CBI22625.3| unnamed protein product [Vitis vinifera]
          Length = 880

 Score =  278 bits (711), Expect = 6e-72,   Method: Compositional matrix adjust.
 Identities = 178/632 (28%), Positives = 306/632 (48%), Gaps = 55/632 (8%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMP-------- 69
           I  YSK G   EA  +F+ M   ++VS+  M+S F++ G  S+A +L+  M         
Sbjct: 158 IDFYSKCGCTQEAYRVFEYMNNGDIVSWTMMVSSFVEAGSWSQALQLYHRMIQTGVAPNE 217

Query: 70  ------------------------------ERNVVSWTAMICGLADAGRVCEARKLFEEM 99
                                         E N+V  TA++        + +A K+ +  
Sbjct: 218 FTFVKLLAASSFLGLNYGKLVHAHLMMWRIELNLVLKTALVDMYCKCQSIEDAVKVSKLT 277

Query: 100 PERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFE 159
            E +V  W +++ G  ++ +  EA   F+ M    V+  N   +G +  C    A+ L +
Sbjct: 278 LEYDVFLWTAIISGFTQSLKFREAITAFHEMETSGVVPNNFTYSGILNACSSILALDLGK 337

Query: 160 EMEER--------NVVTWTSMISGYCRAGE-VEEGYCLFRRMPRKNVVSWTAMIGGFAWN 210
           ++  R        +V    S++  Y +    +E+    FR +   NV+SWT++I GF+ +
Sbjct: 338 QIHSRVVMAGLENDVSVGNSLVDMYMKCSNMIEDAVRAFRGIASPNVISWTSLIAGFSEH 397

Query: 211 GFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTV----PVRDE 266
           G  +ES+ +F  M+G+   G   N  + ++++        L + + L   +       D 
Sbjct: 398 GLEEESIKVFGAMQGV---GVRPNSFTLSTILGACGTIKSLTQTRKLHGYIIKNNADNDV 454

Query: 267 ISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAH 326
           +   +++D Y  +G V +A+++   M  RD + +T++ + + Q      A  +   M   
Sbjct: 455 VVGNALVDAYAGLGMVDDAWHVTSMMKHRDVITYTSLATRINQTGNHEMALNIITHMNKD 514

Query: 327 GVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNA 386
            V     + +    AA     ++ G+Q+HC  +K+   S + + N L+ +Y KCG I +A
Sbjct: 515 DVRMDGFSLASFLSAAAGIPIMETGKQLHCYSVKSGLGSWISVSNGLVDLYGKCGCIHDA 574

Query: 387 YNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHA 446
           +  F  +   D VSWN ++ G + +G  +  L  FE M  +G  P+ +T L +L ACSH 
Sbjct: 575 HRSFLEITEPDAVSWNGLIFGLASNGHVSSALSAFEDMRLAGVEPDQITCLLVLYACSHG 634

Query: 447 GLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGA 506
           GLV  G + F +M + + I+P  +HYV +++LLGRAG+++EA   +  +PF+PD  I+  
Sbjct: 635 GLVDMGLDYFQSMREKHGIRPQLDHYVCLVDLLGRAGRLEEAMNVIETMPFKPDALIYKT 694

Query: 507 LLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKG 566
           LLGAC    GN  + EH A++ LELDP +   +V+L N+Y  SGR     K R  M  +G
Sbjct: 695 LLGACKL-HGNIPLGEHMARQGLELDPSDPAFYVLLANLYDDSGRSELGEKTRRMMRERG 753

Query: 567 VRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
           VRK PG SW+     + +F +GD    Q+ +I
Sbjct: 754 VRKNPGQSWMEERNMVHLFTAGDTSHPQIGKI 785



 Score =  172 bits (436), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 133/447 (29%), Positives = 211/447 (47%), Gaps = 46/447 (10%)

Query: 9   SLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEM 68
           SL+  + S     S R  I     + ++  Q ++   N +LS + +   ++EAR+LF+EM
Sbjct: 17  SLLKDIVSFCNSRSVRDGICIHSPIIKMGFQEDMFLSNNLLSLYGKCFGVAEARQLFDEM 76

Query: 69  PERNVVSWTAMICGLADAGRVCEARKLFEEM------PERNVVSWNSMVVGLIRNGELNE 122
           P R+V SWT ++      G   EA +LF+ M      P    +S        +R  E N 
Sbjct: 77  PCRDVASWTMLMSAYGKIGNHEEALELFDSMLISGEYPNEFTLSTALRSCSALR--EFNH 134

Query: 123 ARKVFNSMPIK-----NVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYC 177
             + F ++  K     N +  +A+I  Y +C    EA  +FE M   ++V+WT M+S + 
Sbjct: 135 GTR-FQALVTKSGFDSNPVLGSALIDFYSKCGCTQEAYRVFEYMNNGDIVSWTMMVSSFV 193

Query: 178 RAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQS 237
            AG   +   L+ RM +           G A N F    LL      G+          +
Sbjct: 194 EAGSWSQALQLYHRMIQT----------GVAPNEFTFVKLLAASSFLGL----------N 233

Query: 238 CNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDA 297
              +++ ++   R+E   NL         +  T+++D Y     + +A  +     + D 
Sbjct: 234 YGKLVHAHLMMWRIE--LNL---------VLKTALVDMYCKCQSIEDAVKVSKLTLEYDV 282

Query: 298 VAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCV 357
             WTA+ISG  Q+  F EA   F EM   GV P N T+S +  A  +   +DLG+QIH  
Sbjct: 283 FLWTAIISGFTQSLKFREAITAFHEMETSGVVPNNFTYSGILNACSSILALDLGKQIHSR 342

Query: 358 LMKTESESDLILENCLISMYAKCG-VIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANE 416
           ++    E+D+ + N L+ MY KC  +I++A   F  + S +++SW S++ GFS HGL  E
Sbjct: 343 VVMAGLENDVSVGNSLVDMYMKCSNMIEDAVRAFRGIASPNVISWTSLIAGFSEHGLEEE 402

Query: 417 TLKVFESMLESGTHPNSVTFLGILSAC 443
           ++KVF +M   G  PNS T   IL AC
Sbjct: 403 SIKVFGAMQGVGVRPNSFTLSTILGAC 429



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 102/359 (28%), Positives = 172/359 (47%), Gaps = 23/359 (6%)

Query: 171 SMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNG 230
           +++S Y +   V E   LF  MP ++V SWT ++  +   G H+E+L LF  M    +  
Sbjct: 55  NLLSLYGKCFGVAEARQLFDEMPCRDVASWTMLMSAYGKIGNHEEALELFDSMLISGEYP 114

Query: 231 N----NCNVQSCNSM--INGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSN 284
           N    +  ++SC+++   N   RF  L   ++ FD+ PV      +++ID Y   G    
Sbjct: 115 NEFTLSTALRSCSALREFNHGTRFQALV-TKSGFDSNPVLG----SALIDFYSKCGCTQE 169

Query: 285 AYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGA 344
           AY +F  M + D V+WT M+S  V+   + +A  L+  M   GV P   TF  L  AA +
Sbjct: 170 AYRVFEYMNNGDIVSWTMMVSSFVEAGSWSQALQLYHRMIQTGVAPNEFTFVKLL-AASS 228

Query: 345 TANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSM 404
              ++ G+ +H  LM    E +L+L+  L+ MY KC  I++A  +    +  D+  W ++
Sbjct: 229 FLGLNYGKLVHAHLMMWRIELNLVLKTALVDMYCKCQSIEDAVKVSKLTLEYDVFLWTAI 288

Query: 405 VMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYK 464
           + GF+      E +  F  M  SG  PN+ T+ GIL+ACS    +  G ++ + +     
Sbjct: 289 ISGFTQSLKFREAITAFHEMETSGVVPNNFTYSGILNACSSILALDLGKQIHSRV----- 343

Query: 465 IQPGPEHYV----SMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAE 519
           +  G E+ V    S++++  +   + E      R    P+   W +L+   GF E   E
Sbjct: 344 VMAGLENDVSVGNSLVDMYMKCSNMIEDAVRAFRGIASPNVISWTSLIA--GFSEHGLE 400



 Score = 69.3 bits (168), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 41/135 (30%), Positives = 65/135 (48%), Gaps = 1/135 (0%)

Query: 354 IHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGL 413
           IH  ++K   + D+ L N L+S+Y KC  +  A  +F  M  RD+ SW  ++  +   G 
Sbjct: 37  IHSPIIKMGFQEDMFLSNNLLSLYGKCFGVAEARQLFDEMPCRDVASWTMLMSAYGKIGN 96

Query: 414 ANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYV 473
             E L++F+SML SG +PN  T    L +CS     + G   F A+         P    
Sbjct: 97  HEEALELFDSMLISGEYPNEFTLSTALRSCSALREFNHGTR-FQALVTKSGFDSNPVLGS 155

Query: 474 SMINLLGRAGKIKEA 488
           ++I+   + G  +EA
Sbjct: 156 ALIDFYSKCGCTQEA 170



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 53/257 (20%), Positives = 102/257 (39%), Gaps = 49/257 (19%)

Query: 4   RNHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARR 63
           +N+  + VV   + +  Y+  G +D+A  +  +M  R+V++Y ++ +   Q G    A  
Sbjct: 447 KNNADNDVVVGNALVDAYAGLGMVDDAWHVTSMMKHRDVITYTSLATRINQTGNHEMALN 506

Query: 64  LFEEMPERNVV-----------------------------------SWTAMICGLAD--- 85
           +   M + +V                                    SW ++  GL D   
Sbjct: 507 IITHMNKDDVRMDGFSLASFLSAAAGIPIMETGKQLHCYSVKSGLGSWISVSNGLVDLYG 566

Query: 86  -AGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAG 144
             G + +A + F E+ E + VSWN ++ GL  NG ++ A   F  M +  V         
Sbjct: 567 KCGCIHDAHRSFLEITEPDAVSWNGLIFGLASNGHVSSALSAFEDMRLAGVEPDQITCLL 626

Query: 145 YVECCMMGEAIVL----FEEMEERNVVT-----WTSMISGYCRAGEVEEGYCLFRRMPRK 195
            +  C  G  + +    F+ M E++ +      +  ++    RAG +EE   +   MP K
Sbjct: 627 VLYACSHGGLVDMGLDYFQSMREKHGIRPQLDHYVCLVDLLGRAGRLEEAMNVIETMPFK 686

Query: 196 -NVVSWTAMIGGFAWNG 211
            + + +  ++G    +G
Sbjct: 687 PDALIYKTLLGACKLHG 703


>gi|449523361|ref|XP_004168692.1| PREDICTED: pentatricopeptide repeat-containing protein At5g42450,
           mitochondrial-like [Cucumis sativus]
          Length = 516

 Score =  278 bits (711), Expect = 6e-72,   Method: Compositional matrix adjust.
 Identities = 158/453 (34%), Positives = 261/453 (57%), Gaps = 13/453 (2%)

Query: 153 EAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMP----RKNVVSWTAMI-GGF 207
           +A  L++++   NVV+ T+ I    R  + EE   LF  M     R N  ++  +I    
Sbjct: 47  DARQLYDKLPHLNVVSATTAIGRCARQHQHEEALSLFSAMLVLNLRPNEFTFGTVIQSAK 106

Query: 208 AWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEI 267
           A    H    L    +K     G + N+   +++++ Y++ G +EEAQ  F+ + + + +
Sbjct: 107 ALGDIHIGKQLHVCAIK----TGLHSNLFVGSALLDLYVKVGVIEEAQRAFEDIKMPNVV 162

Query: 268 SWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHG 327
           S+TS+I GYL + ++ +A  +F  MP+R+ V+W +MI G  Q     +A +LF++M   G
Sbjct: 163 SYTSLISGYLKIERIRDALRVFDEMPERNVVSWNSMIGGFSQKGHNEDAVHLFIDMLREG 222

Query: 328 VPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAY 387
           + P  +TF     AA   A+I +GR  H   +K   + D+ + N LIS YAKCG ++++ 
Sbjct: 223 ILPTQSTFPCAICAAANIASIGIGRSFHACAVKFFGKLDVFVSNSLISFYAKCGSMEDSL 282

Query: 388 NIFSNMVS-RDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHA 446
            +F+ ++  R++VSWN+++ GF+ +G   E +  ++ M+ +G  PN+VTFL +L AC+HA
Sbjct: 283 LVFNKLLDERNVVSWNAVLSGFAQNGRGKEAIDFYQRMILAGCKPNAVTFLSLLWACNHA 342

Query: 447 GLVSRGWELFN-AMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWG 505
           GLV  G+  FN A  D   +    EHY  M++LL R+G+ K AEEF+  LPF+P    W 
Sbjct: 343 GLVDEGYSYFNQARLDNPNLLKA-EHYACMVDLLSRSGQFKRAEEFIHDLPFDPGIGFWK 401

Query: 506 ALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLK 565
           ALLG C     N E+ E AA+R+L LDP +  ++V++ N ++A+G+      LR +M  K
Sbjct: 402 ALLGGCQI-HSNVELGELAAQRILALDPGDVSSYVMMSNAHSAAGKWHSVSILRREMKEK 460

Query: 566 GVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
           G++++PGCSW+     + +F++GDK   Q  EI
Sbjct: 461 GLKRIPGCSWIEIRSKVHVFVTGDKNHHQKDEI 493



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 78/273 (28%), Positives = 141/273 (51%), Gaps = 24/273 (8%)

Query: 21  YSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMI 80
           Y K G I+EA+  F+ +   NVVSY +++SG+L+  R+ +A R+F+EMPERNVVSW +MI
Sbjct: 140 YVKVGVIEEAQRAFEDIKMPNVVSYTSLISGYLKIERIRDALRVFDEMPERNVVSWNSMI 199

Query: 81  CGLADAGRVCEARKLFEEMPERNVVSWNSMV------------VGLIRNGELNEARKVFN 128
            G +  G   +A  LF +M    ++   S              +G+ R+     A K F 
Sbjct: 200 GGFSQKGHNEDAVHLFIDMLREGILPTQSTFPCAICAAANIASIGIGRSFHAC-AVKFFG 258

Query: 129 SMPIKNVISWNAMIAGYVECCMMGEAIVLFEE-MEERNVVTWTSMISGYCRAGEVEEGYC 187
            +   +V   N++I+ Y +C  M +++++F + ++ERNVV+W +++SG+ + G  +E   
Sbjct: 259 KL---DVFVSNSLISFYAKCGSMEDSLLVFNKLLDERNVVSWNAVLSGFAQNGRGKEAID 315

Query: 188 LFRRMP----RKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMIN 243
            ++RM     + N V++ +++      G   E    F + +   DN N    +    M++
Sbjct: 316 FYQRMILAGCKPNAVTFLSLLWACNHAGLVDEGYSYFNQAR--LDNPNLLKAEHYACMVD 373

Query: 244 GYIRFGRLEEAQNLFDTVPVRDEIS-WTSMIDG 275
              R G+ + A+     +P    I  W +++ G
Sbjct: 374 LLSRSGQFKRAEEFIHDLPFDPGIGFWKALLGG 406



 Score =  113 bits (282), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 104/395 (26%), Positives = 182/395 (46%), Gaps = 35/395 (8%)

Query: 23  KRGFIDEAKALFQLMPQRNVVSYNAML---SGFLQNGRLSEARRLFEEMPERNVVSWTAM 79
           ++ F      L +L P  N       L   +     G+L +AR+L++++P  NVVS T  
Sbjct: 8   RKPFTSSCTQLTKLKPDGNAAVGTPPLPFQATSFSGGQL-DARQLYDKLPHLNVVSATTA 66

Query: 80  ICGLADAGRVCEARKLFEEMPERNV----VSWNSMVVGLIRNGELNEARKVFNSMPIK-- 133
           I   A   +  EA  LF  M   N+     ++ +++      G+++  +++ +   IK  
Sbjct: 67  IGRCARQHQHEEALSLFSAMLVLNLRPNEFTFGTVIQSAKALGDIHIGKQL-HVCAIKTG 125

Query: 134 ---NVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFR 190
              N+   +A++  YV+  ++ EA   FE+++  NVV++TS+ISGY +   + +   +F 
Sbjct: 126 LHSNLFVGSALLDLYVKVGVIEEAQRAFEDIKMPNVVSYTSLISGYLKIERIRDALRVFD 185

Query: 191 RMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEM--KGICDNGNNCNVQSCNSMINGYIRF 248
            MP +NVVSW +MIGGF+  G +++++ LFI+M  +GI    +      C +     I  
Sbjct: 186 EMPERNVVSWNSMIGGFSQKGHNEDAVHLFIDMLREGILPTQSTFPCAICAAANIASIGI 245

Query: 249 GRLEE--AQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPD-RDAVAWTAMIS 305
           GR     A   F  +   D     S+I  Y   G + ++  +F+ + D R+ V+W A++S
Sbjct: 246 GRSFHACAVKFFGKL---DVFVSNSLISFYAKCGSMEDSLLVFNKLLDERNVVSWNAVLS 302

Query: 306 GLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLG-------RQIHCVL 358
           G  QN    EA   +  M   G  P   TF  L  A      +D G       R  +  L
Sbjct: 303 GFAQNGRGKEAIDFYQRMILAGCKPNAVTFLSLLWACNHAGLVDEGYSYFNQARLDNPNL 362

Query: 359 MKTESESDLILENCLISMYAKCGVIDNAYNIFSNM 393
           +K E  +      C++ + ++ G    A     ++
Sbjct: 363 LKAEHYA------CMVDLLSRSGQFKRAEEFIHDL 391



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 81/284 (28%), Positives = 138/284 (48%), Gaps = 24/284 (8%)

Query: 41  NVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMP 100
           N+   +A+L  +++ G + EA+R FE++   NVVS+T++I G     R+ +A ++F+EMP
Sbjct: 129 NLFVGSALLDLYVKVGVIEEAQRAFEDIKMPNVVSYTSLISGYLKIERIRDALRVFDEMP 188

Query: 101 ERNVVSWNSMVVGLIRNGELNEARKVFNSM------PIKNVISWNAMIAGYVECCMMGE- 153
           ERNVVSWNSM+ G  + G   +A  +F  M      P ++        A  +    +G  
Sbjct: 189 ERNVVSWNSMIGGFSQKGHNEDAVHLFIDMLREGILPTQSTFPCAICAAANIASIGIGRS 248

Query: 154 ----AIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRR-MPRKNVVSWTAMIGGFA 208
               A+  F +++   V    S+IS Y + G +E+   +F + +  +NVVSW A++ GFA
Sbjct: 249 FHACAVKFFGKLD---VFVSNSLISFYAKCGSMEDSLLVFNKLLDERNVVSWNAVLSGFA 305

Query: 209 WNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLF-----DTVPV 263
            NG  KE++  +  M      G   N  +  S++      G ++E  + F     D   +
Sbjct: 306 QNGRGKEAIDFYQRM---ILAGCKPNAVTFLSLLWACNHAGLVDEGYSYFNQARLDNPNL 362

Query: 264 RDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVA-WTAMISG 306
                +  M+D     GQ   A    H++P    +  W A++ G
Sbjct: 363 LKAEHYACMVDLLSRSGQFKRAEEFIHDLPFDPGIGFWKALLGG 406



 Score = 82.4 bits (202), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 61/198 (30%), Positives = 100/198 (50%), Gaps = 21/198 (10%)

Query: 11  VVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPE 70
           VV  TS I+ Y K   I +A  +F  MP+RNVVS+N+M+ GF Q G   +A  LF +M  
Sbjct: 161 VVSYTSLISGYLKIERIRDALRVFDEMPERNVVSWNSMIGGFSQKGHNEDAVHLFIDMLR 220

Query: 71  RNVVSWTAMI------------CGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNG 118
             ++   +               G+  +   C A K F ++   +V   NS++    + G
Sbjct: 221 EGILPTQSTFPCAICAAANIASIGIGRSFHAC-AVKFFGKL---DVFVSNSLISFYAKCG 276

Query: 119 ELNEARKVFNS-MPIKNVISWNAMIAGYVECCMMGEAIVLFEEME----ERNVVTWTSMI 173
            + ++  VFN  +  +NV+SWNA+++G+ +     EAI  ++ M     + N VT+ S++
Sbjct: 277 SMEDSLLVFNKLLDERNVVSWNAVLSGFAQNGRGKEAIDFYQRMILAGCKPNAVTFLSLL 336

Query: 174 SGYCRAGEVEEGYCLFRR 191
                AG V+EGY  F +
Sbjct: 337 WACNHAGLVDEGYSYFNQ 354


>gi|255558188|ref|XP_002520121.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223540613|gb|EEF42176.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 589

 Score =  278 bits (711), Expect = 6e-72,   Method: Compositional matrix adjust.
 Identities = 184/585 (31%), Positives = 303/585 (51%), Gaps = 79/585 (13%)

Query: 41  NVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEM- 99
           +++  N +++ + + G +  ARR+F+EM +RN+VSW+A+I G    G+   A  LF +M 
Sbjct: 37  DIIVSNHVINLYSKCGNVIFARRMFDEMSDRNLVSWSAIISGYDQTGQPLLALNLFSQMR 96

Query: 100 --PER----NVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGE 153
             P      +V+S  + +  L +  +++        + +  V   NA+I+ Y++C +  +
Sbjct: 97  IVPNEYVFASVISACASLTALSQGLQVHAQSLKLGCVSVSFV--SNALISMYMKCGLCTD 154

Query: 154 AIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFH 213
           A+++   M E N V++ ++I+G+    + E+G   F+ M +K          GFA + F 
Sbjct: 155 ALLVHNVMSEPNAVSYNALIAGFVENQQPEKGIEAFKVMRQK----------GFAPDRFT 204

Query: 214 KESLLLFIEMKGICDNGNN-------------CNVQSC----NSMINGYIRFGRLEEAQN 256
              LL      GIC + ++              N++      N +I  Y +F  +EEA+ 
Sbjct: 205 FSGLL------GICTSYDDFWRGMQLHCQMIKLNLEDSAFIGNVIITMYSKFNLIEEAEK 258

Query: 257 LFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEA 316
           +F  +  +D ISW +++           A  +F +M D   V +                
Sbjct: 259 VFGLIKEKDLISWNTLVTACCFCKDHERALRVFRDMLD---VCF---------------- 299

Query: 317 TYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISM 376
                      V P + TF+ +  A    A+I  G+QIH  L++T    D+ + N L++M
Sbjct: 300 -----------VKPDDFTFAGVLAACAGLASIRHGKQIHGHLIRTRQYQDVGVSNALVNM 348

Query: 377 YAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTF 436
           YAKCG I N+Y++F     R+LVSWN+++  F +HGL    L+ FE M   G HP+SVTF
Sbjct: 349 YAKCGSIKNSYDVFRRTSDRNLVSWNTIIAAFGNHGLGARALEHFEKMKTVGIHPDSVTF 408

Query: 437 LGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLP 496
           +G+L+AC+HAGLV  G   FN+M + Y I P  EH+  +I+LLGRAG+++EAEE++ +LP
Sbjct: 409 VGLLTACNHAGLVEEGQVYFNSMEEAYGIFPNIEHFSCLIDLLGRAGRLQEAEEYMEKLP 468

Query: 497 FEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAAS---GRHV 553
           F  D  I G+LL AC    G+  I EH A +LL+L P+    +V+L N+YA+    G   
Sbjct: 469 FGHDPIILGSLLSACRL-HGDMVIGEHLATQLLKLQPVTTSPYVLLSNLYASDEMWGGVA 527

Query: 554 EEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
           E  K+   +   G++K PG S +   G  + F  GD   +++ EI
Sbjct: 528 EAWKM---LKYSGLKKEPGHSLIDVMGMFEKFTMGDLSHSRIEEI 569



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 123/527 (23%), Positives = 221/527 (41%), Gaps = 84/527 (15%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEM---PER--- 71
           I  YSK G +  A+ +F  M  RN+VS++A++SG+ Q G+   A  LF +M   P     
Sbjct: 45  INLYSKCGNVIFARRMFDEMSDRNLVSWSAIISGYDQTGQPLLALNLFSQMRIVPNEYVF 104

Query: 72  -NVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSM 130
            +V+S  A +  L+   +V  A+ L       + VS N+++   ++ G   +A  V N M
Sbjct: 105 ASVISACASLTALSQGLQV-HAQSLKLGCVSVSFVS-NALISMYMKCGLCTDALLVHNVM 162

Query: 131 PIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVT------------------WTSM 172
              N +S+NA+IAG+VE     + I  F+ M ++                      W  M
Sbjct: 163 SEPNAVSYNALIAGFVENQQPEKGIEAFKVMRQKGFAPDRFTFSGLLGICTSYDDFWRGM 222

Query: 173 ---------------------ISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNG 211
                                I+ Y +   +EE   +F  +  K+++SW  ++    +  
Sbjct: 223 QLHCQMIKLNLEDSAFIGNVIITMYSKFNLIEEAEKVFGLIKEKDLISWNTLVTACCFCK 282

Query: 212 FHKESLLLFIEMKGIC----DNGNNCNV-QSCNSMINGYIRFGRLEEAQNLFDTVPVRDE 266
            H+ +L +F +M  +C    D+     V  +C  + +  IR G+ +   +L  T   +D 
Sbjct: 283 DHERALRVFRDMLDVCFVKPDDFTFAGVLAACAGLAS--IRHGK-QIHGHLIRTRQYQDV 339

Query: 267 ISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAH 326
               ++++ Y   G + N+Y +F    DR+ V+W  +I+    + L   A   F +M+  
Sbjct: 340 GVSNALVNMYAKCGSIKNSYDVFRRTSDRNLVSWNTIIAAFGNHGLGARALEHFEKMKTV 399

Query: 327 GVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILEN-----CLISMYAKCG 381
           G+ P + TF  L  A      ++ G+    V   +  E+  I  N     CLI +  + G
Sbjct: 400 GIHPDSVTFVGLLTACNHAGLVEEGQ----VYFNSMEEAYGIFPNIEHFSCLIDLLGRAG 455

Query: 382 VIDNAYNIFSNM-VSRDLVSWNSMVMGFSHHG-------LANETLKVFESMLESGTHPNS 433
            +  A      +    D +   S++     HG       LA + LK     L+  T    
Sbjct: 456 RLQEAEEYMEKLPFGHDPIILGSLLSACRLHGDMVIGEHLATQLLK-----LQPVTTSPY 510

Query: 434 VTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLG 480
           V    + ++    G V+  W++    +   K +PG     S+I+++G
Sbjct: 511 VLLSNLYASDEMWGGVAEAWKMLK--YSGLKKEPGH----SLIDVMG 551



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 34/105 (32%), Positives = 58/105 (55%), Gaps = 3/105 (2%)

Query: 351 GRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSH 410
           G  +H   +KT   SD+I+ N +I++Y+KCG +  A  +F  M  R+LVSW++++ G+  
Sbjct: 22  GLSLHAAALKTGMLSDIIVSNHVINLYSKCGNVIFARRMFDEMSDRNLVSWSAIISGYDQ 81

Query: 411 HGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWEL 455
            G     L +F  M      PN   F  ++SAC+    +S+G ++
Sbjct: 82  TGQPLLALNLFSQM---RIVPNEYVFASVISACASLTALSQGLQV 123


>gi|219363695|ref|NP_001136685.1| uncharacterized protein LOC100216817 [Zea mays]
 gi|194696634|gb|ACF82401.1| unknown [Zea mays]
          Length = 615

 Score =  278 bits (710), Expect = 7e-72,   Method: Compositional matrix adjust.
 Identities = 154/453 (33%), Positives = 234/453 (51%), Gaps = 40/453 (8%)

Query: 139 NAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVV 198
           NA+I  Y +   + +A  +F+EM  R+VV+W + ++   R GEV+    +F  MP K+ V
Sbjct: 168 NALIDAYSKNQGLSDAKKVFDEMTTRDVVSWNTAMAAMVRQGEVDAARSMFDEMPEKDTV 227

Query: 199 SWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLF 258
           SW                                      N+M++GY + G  E+A  LF
Sbjct: 228 SW--------------------------------------NTMLDGYAKAGEAEKAFELF 249

Query: 259 DTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATY 318
             +P R+ +SW++++  Y   G +  A  +F  MP ++ V WT M+S   Q  L  EA  
Sbjct: 250 QRMPGRNVVSWSTVVSAYCKKGDMEMARVIFDKMPAKNLVTWTIMVSACAQKGLVEEAGR 309

Query: 319 LFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYA 378
           LF EM    +         +  A   + ++ LG++IH  + + +     ++ N L+ M+ 
Sbjct: 310 LFTEMMDAAIELDVIAVVSILAACAESGSLALGKRIHRHVRQRKLSRSTLVCNALMDMFC 369

Query: 379 KCGVIDNAYNIF-SNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFL 437
           KCG ++ A  IF + +V +DLVSWN ++ GF+ HG   + L++F  M + G HP++VT +
Sbjct: 370 KCGCVNRADYIFDTEIVEKDLVSWNIIIGGFAMHGPGEKALELFAQMKQQGFHPDAVTLI 429

Query: 438 GILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPF 497
            +LSAC+H GLV  G   F  M   Y I+P  EHY  M++LLGR G IKEA + + R+P+
Sbjct: 430 NVLSACTHMGLVEEGRRFFANMETDYGIKPQIEHYGCMVDLLGRGGLIKEAVDMIKRMPW 489

Query: 498 EPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHK 557
           EP+  IWG+LL AC     N E AE A   L  L P +A  + VL NIYA +G+  +  K
Sbjct: 490 EPNEVIWGSLLSACRL-HKNVEYAELAVNELSNLQPSSAGNYAVLSNIYAEAGKWSDMAK 548

Query: 558 LRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDK 590
            R+ M   G +K  G SW+  N     F  GD+
Sbjct: 549 ARVQMKGTGSQKTAGSSWIELNEAFHEFTVGDR 581



 Score =  161 bits (408), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 112/413 (27%), Positives = 201/413 (48%), Gaps = 19/413 (4%)

Query: 7   PKSLVVHLTSSITKYSKRGFIDEAKALFQLMP--QRNVVSYNAMLSGFLQNG----RLSE 60
           P S  +   + +  Y+       A A+F  +P  QR   +Y+ ++      G    R + 
Sbjct: 93  PSSTTLLTKTLLRAYALNSLPHAALAVFLDVPLRQRGTFTYSFLIKALAAAGLTPVRGAH 152

Query: 61  ARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGEL 120
           A  +     E   V   A+I   +    + +A+K+F+EM  R+VVSWN+ +  ++R GE+
Sbjct: 153 AHVVKLGSAEDTFVG-NALIDAYSKNQGLSDAKKVFDEMTTRDVVSWNTAMAAMVRQGEV 211

Query: 121 NEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAG 180
           + AR +F+ MP K+ +SWN M+ GY +     +A  LF+ M  RNVV+W++++S YC+ G
Sbjct: 212 DAARSMFDEMPEKDTVSWNTMLDGYAKAGEAEKAFELFQRMPGRNVVSWSTVVSAYCKKG 271

Query: 181 EVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNS 240
           ++E    +F +MP KN+V+WT M+   A  G  +E+  LF EM    D     +V +  S
Sbjct: 272 DMEMARVIFDKMPAKNLVTWTIMVSACAQKGLVEEAGRLFTEM---MDAAIELDVIAVVS 328

Query: 241 MINGYIRFGRLEEAQNLFDTVP----VRDEISWTSMIDGYLSVGQVSNAYYLFHN-MPDR 295
           ++      G L   + +   V      R  +   +++D +   G V+ A Y+F   + ++
Sbjct: 329 ILAACAESGSLALGKRIHRHVRQRKLSRSTLVCNALMDMFCKCGCVNRADYIFDTEIVEK 388

Query: 296 DAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIH 355
           D V+W  +I G   +    +A  LF +M+  G  P   T   +  A      ++ GR+  
Sbjct: 389 DLVSWNIIIGGFAMHGPGEKALELFAQMKQQGFHPDAVTLINVLSACTHMGLVEEGRRFF 448

Query: 356 CVLMKTESESDLILEN--CLISMYAKCGVIDNAYNIFSNMV-SRDLVSWNSMV 405
              M+T+      +E+  C++ +  + G+I  A ++   M    + V W S++
Sbjct: 449 AN-METDYGIKPQIEHYGCMVDLLGRGGLIKEAVDMIKRMPWEPNEVIWGSLL 500



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 64/257 (24%), Positives = 109/257 (42%), Gaps = 34/257 (13%)

Query: 316 ATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLIS 375
           A +L + +R  G      T+S L  A  A A +   R  H  ++K  S  D  + N LI 
Sbjct: 118 AVFLDVPLRQRG----TFTYSFLIKALAA-AGLTPVRGAHAHVVKLGSAEDTFVGNALID 172

Query: 376 MYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVT 435
            Y+K   + +A  +F  M +RD+VSWN+ +      G  +    +F+ M E  T    V+
Sbjct: 173 AYSKNQGLSDAKKVFDEMTTRDVVSWNTAMAAMVRQGEVDAARSMFDEMPEKDT----VS 228

Query: 436 FLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPE--HYVSMINLLGRAGKIKEAEEFVL 493
           +  +L   + AG   + +ELF  M       PG     + ++++   + G ++ A     
Sbjct: 229 WNTMLDGYAKAGEAEKAFELFQRM-------PGRNVVSWSTVVSAYCKKGDMEMARVIFD 281

Query: 494 RLPFEPDHRIWGALLGAC---GFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASG 550
           ++P + +   W  ++ AC   G  E    +        +ELD +   + +  C   A SG
Sbjct: 282 KMPAK-NLVTWTIMVSACAQKGLVEEAGRLFTEMMDAAIELDVIAVVSILAAC---AESG 337

Query: 551 ---------RHVEEHKL 558
                    RHV + KL
Sbjct: 338 SLALGKRIHRHVRQRKL 354


>gi|225451356|ref|XP_002275085.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04750,
           mitochondrial-like [Vitis vinifera]
          Length = 654

 Score =  278 bits (710), Expect = 7e-72,   Method: Compositional matrix adjust.
 Identities = 161/466 (34%), Positives = 254/466 (54%), Gaps = 11/466 (2%)

Query: 139 NAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRM------ 192
           N ++  Y+E   MG A  +F++M   + V++  MI GY + G   E       M      
Sbjct: 166 NTLMKIYLENEKMGLAYQVFQQMAAPDAVSFNIMIFGYAKKGHNIEALKFLHEMVGLGLK 225

Query: 193 PRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLE 252
           P +  +    +  G   +    +S+  +IE +G+  + N   +   N++++ Y++   L 
Sbjct: 226 PDEFTMLGLLICCGRLGDAQLGKSVHAWIERRGLIKSSN---LILNNALLDMYVKCKELR 282

Query: 253 EAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNEL 312
            AQ++F+ +  +D ISW +MI GY  VG +  A+  F +MP RD V+W ++I+G  Q   
Sbjct: 283 IAQSIFNVIVRKDTISWNTMIAGYAKVGNLEIAHNFFEDMPCRDLVSWNSIIAGYAQKGD 342

Query: 313 FVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENC 372
            +    LF  M A  + P   T   L  AA     +  GR IH  +++ + + D  L + 
Sbjct: 343 CLMVQRLFENMVAENIWPDFVTIINLVSAAAEIGALHHGRWIHGWVVRMQMKIDAFLGSA 402

Query: 373 LISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPN 432
            I MY KCG I  A  +F  +  +D+  W +M+ GF+ HG  ++ L++F  M E    PN
Sbjct: 403 FIDMYWKCGSIKRACMVFREVTEKDVTVWTTMITGFAFHGYGSKALQLFYEMQEY-VMPN 461

Query: 433 SVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFV 492
            VTF+ +L+ACSH+G VS+G  +FN+M + Y I+PG EHY  +++LLGR+G+  E ++ +
Sbjct: 462 QVTFVAVLTACSHSGFVSQGLRIFNSMKERYGIEPGVEHYGCLVDLLGRSGRFSEVKDVI 521

Query: 493 LRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRH 552
             +P +P   IWGA+L AC    GN EIAE A K LL+L+P     +V+L NIYA SGR 
Sbjct: 522 EMMPMKPSRSIWGAVLSACR-AYGNIEIAEIAGKELLKLEPEKEGGYVLLSNIYATSGRW 580

Query: 553 VEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
               K+R  M  +GV+K  GCS ++ +G I  F++ DK   +  EI
Sbjct: 581 KHSDKIREIMESRGVKKTAGCSSVVVDGIIHEFVAADKRHPRWIEI 626



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 87/325 (26%), Positives = 149/325 (45%), Gaps = 33/325 (10%)

Query: 30  AKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEM------PERNVVSWTAMICG- 82
           A  +FQ M   + VS+N M+ G+ + G   EA +   EM      P+   +    + CG 
Sbjct: 181 AYQVFQQMAAPDAVSFNIMIFGYAKKGHNIEALKFLHEMVGLGLKPDEFTMLGLLICCGR 240

Query: 83  LADAGRVCEARKLFEE---MPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWN 139
           L DA          E    +   N++  N+++   ++  EL  A+ +FN +  K+ ISWN
Sbjct: 241 LGDAQLGKSVHAWIERRGLIKSSNLILNNALLDMYVKCKELRIAQSIFNVIVRKDTISWN 300

Query: 140 AMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNV-- 197
            MIAGY +   +  A   FE+M  R++V+W S+I+GY + G+      LF  M  +N+  
Sbjct: 301 TMIAGYAKVGNLEIAHNFFEDMPCRDLVSWNSIIAGYAQKGDCLMVQRLFENMVAENIWP 360

Query: 198 --------VSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFG 249
                   VS  A IG    +G      ++ ++MK     G        ++ I+ Y + G
Sbjct: 361 DFVTIINLVSAAAEIGALH-HGRWIHGWVVRMQMKIDAFLG--------SAFIDMYWKCG 411

Query: 250 RLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDR---DAVAWTAMISG 306
            ++ A  +F  V  +D   WT+MI G+   G  S A  LF+ M +    + V + A+++ 
Sbjct: 412 SIKRACMVFREVTEKDVTVWTTMITGFAFHGYGSKALQLFYEMQEYVMPNQVTFVAVLTA 471

Query: 307 LVQNELFVEATYLFMEMRA-HGVPP 330
              +    +   +F  M+  +G+ P
Sbjct: 472 CSHSGFVSQGLRIFNSMKERYGIEP 496



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 67/272 (24%), Positives = 122/272 (44%), Gaps = 29/272 (10%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWT 77
           I  Y+K G ++ A   F+ MP R++VS+N++++G+ Q G     +RLFE M   N+    
Sbjct: 303 IAGYAKVGNLEIAHNFFEDMPCRDLVSWNSIIAGYAQKGDCLMVQRLFENMVAENIWPDF 362

Query: 78  AMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVIS 137
             I  L  A                      +  +G + +G       V   M I   + 
Sbjct: 363 VTIINLVSA----------------------AAEIGALHHGRWIHGWVVRMQMKIDAFLG 400

Query: 138 WNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPR--- 194
            +A I  Y +C  +  A ++F E+ E++V  WT+MI+G+   G   +   LF  M     
Sbjct: 401 -SAFIDMYWKCGSIKRACMVFREVTEKDVTVWTTMITGFAFHGYGSKALQLFYEMQEYVM 459

Query: 195 KNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEA 254
            N V++ A++   + +GF  + L +F  MK     G    V+    +++   R GR  E 
Sbjct: 460 PNQVTFVAVLTACSHSGFVSQGLRIFNSMKE--RYGIEPGVEHYGCLVDLLGRSGRFSEV 517

Query: 255 QNLFDTVPVRDEIS-WTSMIDGYLSVGQVSNA 285
           +++ + +P++   S W +++    + G +  A
Sbjct: 518 KDVIEMMPMKPSRSIWGAVLSACRAYGNIEIA 549



 Score = 65.9 bits (159), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 46/159 (28%), Positives = 74/159 (46%), Gaps = 7/159 (4%)

Query: 290 HNMPDRDAVAWTAMISGLVQNELFVEATYLFM-EMRAHGVPPLNATFSVLFGAAGATANI 348
           H+ P  +   +  MIS L    L +  ++ F   + +  + P  +TF  L  A+   + +
Sbjct: 90  HHTPHPNLYIYNTMISAL---SLSLNQSFAFYNSLLSSCIYPNRSTFLFLLQASKFLSQV 146

Query: 349 DLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGF 408
               QIHC  + T S     L+N L+ +Y +   +  AY +F  M + D VS+N M+ G+
Sbjct: 147 ---MQIHCHAIITGSFYYGYLQNTLMKIYLENEKMGLAYQVFQQMAAPDAVSFNIMIFGY 203

Query: 409 SHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAG 447
           +  G   E LK    M+  G  P+  T LG+L  C   G
Sbjct: 204 AKKGHNIEALKFLHEMVGLGLKPDEFTMLGLLICCGRLG 242


>gi|449451309|ref|XP_004143404.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g21090-like [Cucumis sativus]
 gi|449526377|ref|XP_004170190.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g21090-like [Cucumis sativus]
          Length = 577

 Score =  278 bits (710), Expect = 7e-72,   Method: Compositional matrix adjust.
 Identities = 160/496 (32%), Positives = 270/496 (54%), Gaps = 28/496 (5%)

Query: 120 LNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRA 179
           +  A+K F+ +PI+N+ SWN ++A Y       +A  +F+EM   N+V++ ++IS +   
Sbjct: 62  MENAQKAFDDLPIRNIHSWNTILASYSRAGFFSQARKVFDEMPHPNIVSYNTLISSFTHH 121

Query: 180 GEVEEGYCLFRRMPRK------NVVSWTAMIGGFAWNG-------FHKESLLLFIEMKGI 226
           G   E   +FR+M +       + ++  ++ G  A  G        H  ++++ +E    
Sbjct: 122 GLYVESMNIFRQMQQDFDLLALDEITLVSIAGTCACLGALEFLRQVHGAAIVIGLEF--- 178

Query: 227 CDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAY 286
                  N+  CN++++ Y + G  + + ++F  +  RD ++WTSM+  Y    ++ +A+
Sbjct: 179 -------NMIVCNAIVDAYGKCGDPDASYSIFSRMKERDVVTWTSMVVAYNQTSRLDDAF 231

Query: 287 YLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATA 346
            +F  MP ++   WTA+I+ LV+N+   EA  LF +M      P   TF  +  A    A
Sbjct: 232 RVFSCMPVKNVHTWTALINALVKNKYSNEALDLFQQMLEEKTSPNAFTFVGVLSACADLA 291

Query: 347 NIDLGRQIHCVLMKTESE---SDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNS 403
            I  G++IH ++++  SE    ++ + N LI +Y+K G + +A  +F+ ++ +D+VSWNS
Sbjct: 292 LIAKGKEIHGLIIRRSSELNFPNVYVCNALIDLYSKSGDVKSARMLFNLILEKDVVSWNS 351

Query: 404 MVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVY 463
           ++ GF+ +GL  E L  F  M E G  PN VTFL +LSACSH GL S G  +   M   Y
Sbjct: 352 LITGFAQNGLGREALLAFRKMTEVGIRPNKVTFLAVLSACSHTGLSSEGLCILELMEKFY 411

Query: 464 KIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHR-IWGALLGACGFCEGNAEIAE 522
            I+P  EHY  MI++ GR  ++ EA + + R P    H  IWGA+LGAC   E N ++A 
Sbjct: 412 DIEPSLEHYAVMIDMFGRENRLAEALDLISRAPNGSKHVGIWGAVLGACRIHE-NLDLAI 470

Query: 523 HAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGI 582
            AA+ L E++P NA  +V+L N++AA+ R ++ H +R  M  +G +K    S +      
Sbjct: 471 RAAETLFEMEPDNAGRYVMLSNVFAAASRWMDAHNVRKLMEERGFKKEVAYSCIEIRNIR 530

Query: 583 QMFLSGDKIPAQVAEI 598
             F++ D   +Q+ EI
Sbjct: 531 HKFVARDNSHSQMGEI 546



 Score =  138 bits (347), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 88/312 (28%), Positives = 151/312 (48%), Gaps = 38/312 (12%)

Query: 239 NSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAV 298
           N +I+ Y +   +E AQ  FD +P+R+  SW +++  Y   G  S A  +F  MP  + V
Sbjct: 50  NRLIDMYSKCNSMENAQKAFDDLPIRNIHSWNTILASYSRAGFFSQARKVFDEMPHPNIV 109

Query: 299 AWTAMISGLVQNELFVEATYLFMEMRAH-GVPPLNA-TFSVLFGAAGATANIDLGRQIHC 356
           ++  +IS    + L+VE+  +F +M+    +  L+  T   + G       ++  RQ+H 
Sbjct: 110 SYNTLISSFTHHGLYVESMNIFRQMQQDFDLLALDEITLVSIAGTCACLGALEFLRQVHG 169

Query: 357 VLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSH------ 410
             +    E ++I+ N ++  Y KCG  D +Y+IFS M  RD+V+W SMV+ ++       
Sbjct: 170 AAIVIGLEFNMIVCNAIVDAYGKCGDPDASYSIFSRMKERDVVTWTSMVVAYNQTSRLDD 229

Query: 411 -------------------------HGLANETLKVFESMLESGTHPNSVTFLGILSACSH 445
                                    +  +NE L +F+ MLE  T PN+ TF+G+LSAC+ 
Sbjct: 230 AFRVFSCMPVKNVHTWTALINALVKNKYSNEALDLFQQMLEEKTSPNAFTFVGVLSACAD 289

Query: 446 AGLVSRGWELFNAMFDVYKIQPGPEHYV--SMINLLGRAGKIKEAEEFVLRLPFEPDHRI 503
             L+++G E+   +         P  YV  ++I+L  ++G +K A   +  L  E D   
Sbjct: 290 LALIAKGKEIHGLIIRRSSELNFPNVYVCNALIDLYSKSGDVKSA-RMLFNLILEKDVVS 348

Query: 504 WGALLGACGFCE 515
           W +L+   GF +
Sbjct: 349 WNSLI--TGFAQ 358



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 91/322 (28%), Positives = 157/322 (48%), Gaps = 45/322 (13%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWT 77
           I  YSK   ++ A+  F  +P RN+ S+N +L+ + + G  S+AR++F+EMP  N+VS+ 
Sbjct: 53  IDMYSKCNSMENAQKAFDDLPIRNIHSWNTILASYSRAGFFSQARKVFDEMPHPNIVSYN 112

Query: 78  AMICGLADAGRVCEARKLFEEMPER-NVVSWNSMVVGLIRN-----GELNEARKVFNSMP 131
            +I      G   E+  +F +M +  ++++ + + +  I       G L   R+V  +  
Sbjct: 113 TLISSFTHHGLYVESMNIFRQMQQDFDLLALDEITLVSIAGTCACLGALEFLRQVHGAAI 172

Query: 132 IK----NVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYC 187
           +     N+I  NA++  Y +C     +  +F  M+ER+VVTWTSM+  Y +   +++ + 
Sbjct: 173 VIGLEFNMIVCNAIVDAYGKCGDPDASYSIFSRMKERDVVTWTSMVVAYNQTSRLDDAFR 232

Query: 188 LFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEM------------------------ 223
           +F  MP KNV +WTA+I     N +  E+L LF +M                        
Sbjct: 233 VFSCMPVKNVHTWTALINALVKNKYSNEALDLFQQMLEEKTSPNAFTFVGVLSACADLAL 292

Query: 224 --KGICDNG---------NNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSM 272
             KG   +G         N  NV  CN++I+ Y + G ++ A+ LF+ +  +D +SW S+
Sbjct: 293 IAKGKEIHGLIIRRSSELNFPNVYVCNALIDLYSKSGDVKSARMLFNLILEKDVVSWNSL 352

Query: 273 IDGYLSVGQVSNAYYLFHNMPD 294
           I G+   G    A   F  M +
Sbjct: 353 ITGFAQNGLGREALLAFRKMTE 374



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 56/209 (26%), Positives = 109/209 (52%), Gaps = 20/209 (9%)

Query: 1   MSERNHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSE 60
           M ER+     VV  TS +  Y++   +D+A  +F  MP +NV ++ A+++  ++N   +E
Sbjct: 206 MKERD-----VVTWTSMVVAYNQTSRLDDAFRVFSCMPVKNVHTWTALINALVKNKYSNE 260

Query: 61  ARRLFEEMPER----NVVSWTAMICGLADAGRVCEARKLF-------EEMPERNVVSWNS 109
           A  LF++M E     N  ++  ++   AD   + + +++         E+   NV   N+
Sbjct: 261 ALDLFQQMLEEKTSPNAFTFVGVLSACADLALIAKGKEIHGLIIRRSSELNFPNVYVCNA 320

Query: 110 MVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEE----RN 165
           ++    ++G++  AR +FN +  K+V+SWN++I G+ +  +  EA++ F +M E     N
Sbjct: 321 LIDLYSKSGDVKSARMLFNLILEKDVVSWNSLITGFAQNGLGREALLAFRKMTEVGIRPN 380

Query: 166 VVTWTSMISGYCRAGEVEEGYCLFRRMPR 194
            VT+ +++S     G   EG C+   M +
Sbjct: 381 KVTFLAVLSACSHTGLSSEGLCILELMEK 409



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 55/213 (25%), Positives = 104/213 (48%), Gaps = 13/213 (6%)

Query: 338 LFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRD 397
           LF       ++ +G  +H  L+KT    DL L N LI MY+KC  ++NA   F ++  R+
Sbjct: 17  LFSKCIQHKHLRVGMSLHSHLIKTALSFDLFLANRLIDMYSKCNSMENAQKAFDDLPIRN 76

Query: 398 LVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFN 457
           + SWN+++  +S  G  ++  KVF+ M     HPN V++  ++S+ +H GL      +F 
Sbjct: 77  IHSWNTILASYSRAGFFSQARKVFDEM----PHPNIVSYNTLISSFTHHGLYVESMNIFR 132

Query: 458 AMFDVYKIQPGPEHYVSMINL------LGRAGKIKEAEEFVLRLPFEPDHRIWGALLGAC 511
            M   + +    E  ++++++      LG    +++     + +  E +  +  A++ A 
Sbjct: 133 QMQQDFDLLALDE--ITLVSIAGTCACLGALEFLRQVHGAAIVIGLEFNMIVCNAIVDAY 190

Query: 512 GFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCN 544
           G C G+ + +     R+ E D +   + VV  N
Sbjct: 191 GKC-GDPDASYSIFSRMKERDVVTWTSMVVAYN 222


>gi|6522552|emb|CAB61996.1| putative protein [Arabidopsis thaliana]
          Length = 1229

 Score =  278 bits (710), Expect = 7e-72,   Method: Compositional matrix adjust.
 Identities = 181/582 (31%), Positives = 282/582 (48%), Gaps = 56/582 (9%)

Query: 33  LFQLMPQRNVVSYNAMLSGF--LQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVC 90
           L Q  PQ  V     +L  +  ++  R   +R + E++   N      ++   A    V 
Sbjct: 33  LDQKSPQETVFLLGQVLDTYPDIRTLRTVHSRIILEDL-RCNSSLGVKLMRAYASLKDVA 91

Query: 91  EARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCM 150
            ARK+F+E+PERNV+  N M+   + NG   E  KVF +M   NV   +      ++ C 
Sbjct: 92  SARKVFDEIPERNVIIINVMIRSYVNNGFYGEGVKVFGTMCGCNVRPDHYTFPCVLKACS 151

Query: 151 MGEAIVLFEEME--------ERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTA 202
               IV+  ++            +     ++S Y + G + E   +   M R++VVSW  
Sbjct: 152 CSGTIVIGRKIHGSATKVGLSSTLFVGNGLVSMYGKCGFLSEARLVLDEMSRRDVVSW-- 209

Query: 203 MIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNL---FD 259
                                               NS++ GY +  R ++A  +    +
Sbjct: 210 ------------------------------------NSLVVGYAQNQRFDDALEVCREME 233

Query: 260 TVPVRDEISWTSMIDGYLSVGQVSNAYY---LFHNMPDRDAVAWTAMISGLVQNELFVEA 316
           +V +  +    + +   +S     N  Y   +F  M  +  V+W  MI   ++N + VEA
Sbjct: 234 SVKISHDAGTMASLLPAVSNTTTENVMYVKDMFFKMGKKSLVSWNVMIGVYMKNAMPVEA 293

Query: 317 TYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISM 376
             L+  M A G  P   + + +  A G T+ + LG++IH  + + +   +L+LEN LI M
Sbjct: 294 VELYSRMEADGFEPDAVSITSVLPACGDTSALSLGKKIHGYIERKKLIPNLLLENALIDM 353

Query: 377 YAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTF 436
           YAKCG ++ A ++F NM SRD+VSW +M+  +   G   + + +F  + +SG  P+S+ F
Sbjct: 354 YAKCGCLEKARDVFENMKSRDVVSWTAMISAYGFSGRGCDAVALFSKLQDSGLVPDSIAF 413

Query: 437 LGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLP 496
           +  L+ACSHAGL+  G   F  M D YKI P  EH   M++LLGRAGK+KEA  F+  + 
Sbjct: 414 VTTLAACSHAGLLEEGRSCFKLMTDHYKITPRLEHLACMVDLLGRAGKVKEAYRFIQDMS 473

Query: 497 FEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEH 556
            EP+ R+WGALLGAC     + +I   AA +L +L P  +  +V+L NIYA +GR  E  
Sbjct: 474 MEPNERVWGALLGACRV-HSDTDIGLLAADKLFQLAPEQSGYYVLLSNIYAKAGRWEEVT 532

Query: 557 KLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
            +R  M  KG++K PG S +  N  I  FL GD+   Q  EI
Sbjct: 533 NIRNIMKSKGLKKNPGASNVEVNRIIHTFLVGDRSHPQSDEI 574



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 112/496 (22%), Positives = 202/496 (40%), Gaps = 78/496 (15%)

Query: 21  YSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNV----VSW 76
           Y+    +  A+ +F  +P+RNV+  N M+  ++ NG   E  ++F  M   NV     ++
Sbjct: 84  YASLKDVASARKVFDEIPERNVIIINVMIRSYVNNGFYGEGVKVFGTMCGCNVRPDHYTF 143

Query: 77  TAMICGLADAGRVCEARKLFEEMPERNVVSW----NSMVVGLIRNGELNEARKVFNSMPI 132
             ++   + +G +   RK+     +  + S     N +V    + G L+EAR V + M  
Sbjct: 144 PCVLKACSCSGTIVIGRKIHGSATKVGLSSTLFVGNGLVSMYGKCGFLSEARLVLDEMSR 203

Query: 133 KNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVV----TWTSMISGYCRAGEVEEGYC- 187
           ++V+SWN+++ GY +     +A+ +  EME   +     T  S++            Y  
Sbjct: 204 RDVVSWNSLVVGYAQNQRFDDALEVCREMESVKISHDAGTMASLLPAVSNTTTENVMYVK 263

Query: 188 -LFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKG------------ICDNGNNCN 234
            +F +M +K++VSW  MIG +  N    E++ L+  M+             +     + +
Sbjct: 264 DMFFKMGKKSLVSWNVMIGVYMKNAMPVEAVELYSRMEADGFEPDAVSITSVLPACGDTS 323

Query: 235 VQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPD 294
             S    I+GYI   +L           + + +   ++ID Y   G +  A  +F NM  
Sbjct: 324 ALSLGKKIHGYIERKKL-----------IPNLLLENALIDMYAKCGCLEKARDVFENMKS 372

Query: 295 RDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQI 354
           RD V+WTAMIS    +    +A  LF +++  G+ P +  F     A      ++ GR  
Sbjct: 373 RDVVSWTAMISAYGFSGRGCDAVALFSKLQDSGLVPDSIAFVTTLAACSHAGLLEEGRS- 431

Query: 355 HCV-LMKTESESDLILEN--CLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHH 411
            C  LM    +    LE+  C++ +  + G +  AY    +M                  
Sbjct: 432 -CFKLMTDHYKITPRLEHLACMVDLLGRAGKVKEAYRFIQDM------------------ 472

Query: 412 GLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEH 471
                              PN   +  +L AC        G    + +F +   Q G  +
Sbjct: 473 ----------------SMEPNERVWGALLGACRVHSDTDIGLLAADKLFQLAPEQSG--Y 514

Query: 472 YVSMINLLGRAGKIKE 487
           YV + N+  +AG+ +E
Sbjct: 515 YVLLSNIYAKAGRWEE 530



 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 72/294 (24%), Positives = 139/294 (47%), Gaps = 22/294 (7%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWT 77
           ++ Y K GF+ EA+ +   M +R+VVS+N+++ G+ QN R  +A  +  EM    +    
Sbjct: 182 VSMYGKCGFLSEARLVLDEMSRRDVVSWNSLVVGYAQNQRFDDALEVCREMESVKISHDA 241

Query: 78  AMICGLADA------GRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMP 131
             +  L  A        V   + +F +M ++++VSWN M+   ++N    EA ++++ M 
Sbjct: 242 GTMASLLPAVSNTTTENVMYVKDMFFKMGKKSLVSWNVMIGVYMKNAMPVEAVELYSRME 301

Query: 132 IKNVISWNAMIAGYVECCMMGEAIVLFEEME---ER-----NVVTWTSMISGYCRAGEVE 183
                     I   +  C    A+ L +++    ER     N++   ++I  Y + G +E
Sbjct: 302 ADGFEPDAVSITSVLPACGDTSALSLGKKIHGYIERKKLIPNLLLENALIDMYAKCGCLE 361

Query: 184 EGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMIN 243
           +   +F  M  ++VVSWTAMI  + ++G   +++ LF +++   D+G   +  +  + + 
Sbjct: 362 KARDVFENMKSRDVVSWTAMISAYGFSGRGCDAVALFSKLQ---DSGLVPDSIAFVTTLA 418

Query: 244 GYIRFGRLEEAQNLFDTVPVRDEIS-----WTSMIDGYLSVGQVSNAYYLFHNM 292
                G LEE ++ F  +    +I+        M+D     G+V  AY    +M
Sbjct: 419 ACSHAGLLEEGRSCFKLMTDHYKITPRLEHLACMVDLLGRAGKVKEAYRFIQDM 472


>gi|297834086|ref|XP_002884925.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297330765|gb|EFH61184.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 694

 Score =  278 bits (710), Expect = 8e-72,   Method: Compositional matrix adjust.
 Identities = 167/539 (30%), Positives = 283/539 (52%), Gaps = 25/539 (4%)

Query: 77  TAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVI 136
           T +I   +  G +  AR++F+++P   V  WN+++ G  RN    +A  +++ M +  V 
Sbjct: 57  TKLIHASSSYGDITFARQVFDDLPRPQVFPWNAIIRGYSRNNHFQDALLMYSKMQLARVS 116

Query: 137 SWNAMIAGYVECC------MMGEAI--VLFEEMEERNVVTWTSMISGYCRAGEVEEGYCL 188
             +      ++ C       MG  +   +F    E +V     +I+ Y +   +     +
Sbjct: 117 PDSFTFPHLLKACGGLSHLQMGRFVHAQVFRLGFEADVFVQNGLIALYAKCRRLGCARTV 176

Query: 189 FR--RMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYI 246
           F    +P + +VSWTA++  +A NG   E+L +F +M+ + D   +C   +  S++N + 
Sbjct: 177 FEGLPLPERTIVSWTAIVSAYAQNGEPVEALEIFSQMRKM-DVKPDC--VALVSVLNAFT 233

Query: 247 RFGRLEEAQNLFDTV---PVRDE----ISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVA 299
               LE+ +++  +V    +  E    IS  +M   Y   GQV+ A  LF  M   + + 
Sbjct: 234 CLQDLEQGRSIHASVMKMGLETEPDLLISLNTM---YAKCGQVATAKILFDKMKSPNLIL 290

Query: 300 WTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLM 359
           W AMISG  +N    +A  LF EM    V P   + +    A     +++  R +   + 
Sbjct: 291 WNAMISGYAKNGFAKDAIDLFHEMINKDVRPDTISITSAISACAQVGSLEQARWMDEYVS 350

Query: 360 KTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLK 419
           +++   D+ + + LI M+AKCG ++ A ++F   + RD+V W++M++G+  HG A E + 
Sbjct: 351 RSDYRDDVFISSALIDMFAKCGSVECARSVFDRTLDRDVVVWSAMIVGYGLHGQAREAIS 410

Query: 420 VFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLL 479
           ++ +M   G HPN VTFLG+L AC+H+G+V  GW  FN M D +KI P  +HY  +I+LL
Sbjct: 411 LYRAMERDGVHPNDVTFLGLLIACNHSGMVREGWWFFNRMAD-HKINPQQQHYACIIDLL 469

Query: 480 GRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAH 539
           GRAG + +A E +  +P +P   +WGALL AC     + E+ ++AA++L  +DP N   +
Sbjct: 470 GRAGHLDQAYEVIKCMPVQPGVTVWGALLSACKK-HRHVELGKYAAQQLFSIDPSNTGHY 528

Query: 540 VVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
           V L N+YAA+       ++R+ M  KG+ K  GCSW+   G ++ F  GDK   +  EI
Sbjct: 529 VQLSNLYAAARLWDRVAEVRVRMKEKGLNKDVGCSWVEVRGRLEGFRVGDKSHPRYEEI 587



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 90/344 (26%), Positives = 168/344 (48%), Gaps = 29/344 (8%)

Query: 33  LFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFE--EMPERNVVSWTAMICGLADAGRVC 90
           +F+L  + +V   N +++ + +  RL  AR +FE   +PER +VSWTA++   A  G   
Sbjct: 145 VFRLGFEADVFVQNGLIALYAKCRRLGCARTVFEGLPLPERTIVSWTAIVSAYAQNGEPV 204

Query: 91  EARKLFEEMPERNV----VSWNSMVVGLIRNGELNEARKVFNS---MPIKN----VISWN 139
           EA ++F +M + +V    V+  S++       +L + R +  S   M ++     +IS N
Sbjct: 205 EALEIFSQMRKMDVKPDCVALVSVLNAFTCLQDLEQGRSIHASVMKMGLETEPDLLISLN 264

Query: 140 AMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNV-- 197
            M   Y +C  +  A +LF++M+  N++ W +MISGY + G  ++   LF  M  K+V  
Sbjct: 265 TM---YAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGFAKDAIDLFHEMINKDVRP 321

Query: 198 --VSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQ 255
             +S T+ I   A  G  +++  +  E     D  ++  + S  ++I+ + + G +E A+
Sbjct: 322 DTISITSAISACAQVGSLEQARWM-DEYVSRSDYRDDVFISS--ALIDMFAKCGSVECAR 378

Query: 256 NLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDA-----VAWTAMISGLVQN 310
           ++FD    RD + W++MI GY   GQ   A  L+  M +RD      V +  ++     +
Sbjct: 379 SVFDRTLDRDVVVWSAMIVGYGLHGQAREAISLYRAM-ERDGVHPNDVTFLGLLIACNHS 437

Query: 311 ELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQI 354
            +  E  + F  M  H + P    ++ +    G   ++D   ++
Sbjct: 438 GMVREGWWFFNRMADHKINPQQQHYACIIDLLGRAGHLDQAYEV 481



 Score = 85.9 bits (211), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 64/196 (32%), Positives = 100/196 (51%), Gaps = 12/196 (6%)

Query: 14  LTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNV 73
           L S  T Y+K G +  AK LF  M   N++ +NAM+SG+ +NG   +A  LF EM  ++V
Sbjct: 260 LISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGFAKDAIDLFHEMINKDV 319

Query: 74  ----VSWTAMICGLADAGRVCEARKLFEEMPE---RNVVSWNSMVVGLI-RNGELNEARK 125
               +S T+ I   A  G + +AR + E +     R+ V  +S ++ +  + G +  AR 
Sbjct: 320 RPDTISITSAISACAQVGSLEQARWMDEYVSRSDYRDDVFISSALIDMFAKCGSVECARS 379

Query: 126 VFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNV----VTWTSMISGYCRAGE 181
           VF+    ++V+ W+AMI GY       EAI L+  ME   V    VT+  ++     +G 
Sbjct: 380 VFDRTLDRDVVVWSAMIVGYGLHGQAREAISLYRAMERDGVHPNDVTFLGLLIACNHSGM 439

Query: 182 VEEGYCLFRRMPRKNV 197
           V EG+  F RM    +
Sbjct: 440 VREGWWFFNRMADHKI 455



 Score = 43.1 bits (100), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 25/92 (27%), Positives = 43/92 (46%)

Query: 352 RQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHH 411
           RQIH  L+    +    L   LI   +  G I  A  +F ++    +  WN+++ G+S +
Sbjct: 38  RQIHARLLVLGLQFSGFLITKLIHASSSYGDITFARQVFDDLPRPQVFPWNAIIRGYSRN 97

Query: 412 GLANETLKVFESMLESGTHPNSVTFLGILSAC 443
               + L ++  M  +   P+S TF  +L AC
Sbjct: 98  NHFQDALLMYSKMQLARVSPDSFTFPHLLKAC 129


>gi|413943774|gb|AFW76423.1| hypothetical protein ZEAMMB73_944105 [Zea mays]
          Length = 446

 Score =  278 bits (710), Expect = 8e-72,   Method: Compositional matrix adjust.
 Identities = 139/357 (38%), Positives = 215/357 (60%), Gaps = 7/357 (1%)

Query: 239 NSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAV 298
           N++++ Y + GR  EA+ +FD++P R  +S TS++ GY     V +A  +F  M +++ +
Sbjct: 50  NALVDMYAKCGRTWEARCIFDSMPSRSVVSETSILAGYAKSANVEDAQVVFSQMVEKNVI 109

Query: 299 AWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVL 358
           AW  +I+   QN    EA  LF++++   + P + T+  +  A G  A + LG+Q H  +
Sbjct: 110 AWNVLIAAYAQNGEEEEAIRLFVQLKRDSIWPTHYTYGNVLNACGNIAVLQLGQQAHVHV 169

Query: 359 MKTE------SESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHG 412
           +K         ESD+ + N L+ MY K G ID+   +F  M +RD VSWN+M++G++ +G
Sbjct: 170 LKEGFRFDFGPESDVFVGNSLVDMYLKTGSIDDGAKVFERMAARDNVSWNAMIVGYAQNG 229

Query: 413 LANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHY 472
            A + L +FE ML S  +P+SVT +G+LSAC H+GLV  G   F+ M + + I P  +HY
Sbjct: 230 RAKDALHLFERMLCSNENPDSVTMIGVLSACGHSGLVDEGRRHFHFMTEDHGITPSRDHY 289

Query: 473 VSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELD 532
             M++LLGRAG +KEAEE +  +P EPD  +W +LLGAC     N E+ E  A RL ELD
Sbjct: 290 TCMVDLLGRAGHLKEAEELIKDMPTEPDSVLWASLLGACRL-HKNVELGERTAGRLFELD 348

Query: 533 PLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGD 589
           P N+  +V+L N+YA  G+  +  ++R  M  +GV K PGCSW+     + +FL+ D
Sbjct: 349 PENSGPYVLLSNMYAEMGKWADVFRVRRSMKDRGVSKQPGCSWIEIGSKMNVFLARD 405



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 95/381 (24%), Positives = 158/381 (41%), Gaps = 52/381 (13%)

Query: 116 RNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISG 175
           R G    A  V       +++  NA++  Y +C    EA  +F+ M  R+VV+ TS+++G
Sbjct: 27  REGRQVHAHMVKRDRLRDDMVLNNALVDMYAKCGRTWEARCIFDSMPSRSVVSETSILAG 86

Query: 176 YCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGIC------DN 229
           Y ++  VE+   +F +M  KNV++W  +I  +A NG  +E++ LF+++K           
Sbjct: 87  YAKSANVEDAQVVFSQMVEKNVIAWNVLIAAYAQNGEEEEAIRLFVQLKRDSIWPTHYTY 146

Query: 230 GNNCNVQSCNSMINGYIRFGRLEEAQNL-----FDTVPVRDEISWTSMIDGYLSVGQVSN 284
           GN  N  +C ++    ++ G+      L     FD  P  D     S++D YL  G + +
Sbjct: 147 GNVLN--ACGNI--AVLQLGQQAHVHVLKEGFRFDFGPESDVFVGNSLVDMYLKTGSIDD 202

Query: 285 AYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGA 344
              +F  M  RD V+W AMI G  QN    +A +LF  M      P + T   +  A G 
Sbjct: 203 GAKVFERMAARDNVSWNAMIVGYAQNGRAKDALHLFERMLCSNENPDSVTMIGVLSACGH 262

Query: 345 TANIDLGRQ-IHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNS 403
           +  +D GR+  H +              C++ +  + G +  A  +  +M          
Sbjct: 263 SGLVDEGRRHFHFMTEDHGITPSRDHYTCMVDLLGRAGHLKEAEELIKDM---------- 312

Query: 404 MVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVY 463
                                    T P+SV +  +L AC     V  G      +F++ 
Sbjct: 313 ------------------------PTEPDSVLWASLLGACRLHKNVELGERTAGRLFELD 348

Query: 464 KIQPGPEHYVSMINLLGRAGK 484
               GP  YV + N+    GK
Sbjct: 349 PENSGP--YVLLSNMYAEMGK 367



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 83/288 (28%), Positives = 145/288 (50%), Gaps = 31/288 (10%)

Query: 41  NVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMP 100
           ++V  NA++  + + GR  EAR +F+ MP R+VVS T+++ G A +  V +A+ +F +M 
Sbjct: 45  DMVLNNALVDMYAKCGRTWEARCIFDSMPSRSVVSETSILAGYAKSANVEDAQVVFSQMV 104

Query: 101 ERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVL--- 157
           E+NV++WN ++    +NGE  EA ++F  +   ++   +      +  C  G   VL   
Sbjct: 105 EKNVIAWNVLIAAYAQNGEEEEAIRLFVQLKRDSIWPTHYTYGNVLNAC--GNIAVLQLG 162

Query: 158 -------------FEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMI 204
                        F+   E +V    S++  Y + G +++G  +F RM  ++ VSW AMI
Sbjct: 163 QQAHVHVLKEGFRFDFGPESDVFVGNSLVDMYLKTGSIDDGAKVFERMAARDNVSWNAMI 222

Query: 205 GGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFD----- 259
            G+A NG  K++L LF  M  +C N N  +V +   +++     G ++E +  F      
Sbjct: 223 VGYAQNGRAKDALHLFERM--LCSNENPDSV-TMIGVLSACGHSGLVDEGRRHFHFMTED 279

Query: 260 --TVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMP-DRDAVAWTAMI 304
               P RD   +T M+D     G +  A  L  +MP + D+V W +++
Sbjct: 280 HGITPSRDH--YTCMVDLLGRAGHLKEAEELIKDMPTEPDSVLWASLL 325



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 84/318 (26%), Positives = 151/318 (47%), Gaps = 24/318 (7%)

Query: 69  PERNVVSWTAMICGLADAGRVCEARKLFEEMPERN-----VVSWNSMVVGLIRNGELNEA 123
           P+   +S     C    A R  E R++   M +R+     +V  N++V    + G   EA
Sbjct: 8   PDEVTLSSVMSACAGLAAER--EGRQVHAHMVKRDRLRDDMVLNNALVDMYAKCGRTWEA 65

Query: 124 RKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVE 183
           R +F+SMP ++V+S  +++AGY +   + +A V+F +M E+NV+ W  +I+ Y + GE E
Sbjct: 66  RCIFDSMPSRSVVSETSILAGYAKSANVEDAQVVFSQMVEKNVIAWNVLIAAYAQNGEEE 125

Query: 184 EGYCLFRRMPRKNVVSW-TAMIGGFAWNGFHKESLLLFIEMKGI--------CDNGNNCN 234
           E   LF ++ R ++  W T    G   N     ++L   +   +         D G   +
Sbjct: 126 EAIRLFVQLKRDSI--WPTHYTYGNVLNACGNIAVLQLGQQAHVHVLKEGFRFDFGPESD 183

Query: 235 VQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNM-- 292
           V   NS+++ Y++ G +++   +F+ +  RD +SW +MI GY   G+  +A +LF  M  
Sbjct: 184 VFVGNSLVDMYLKTGSIDDGAKVFERMAARDNVSWNAMIVGYAQNGRAKDALHLFERMLC 243

Query: 293 --PDRDAVAWTAMISGLVQNELFVEATYLFMEM-RAHGVPPLNATFSVLFGAAGATANID 349
              + D+V    ++S    + L  E    F  M   HG+ P    ++ +    G   ++ 
Sbjct: 244 SNENPDSVTMIGVLSACGHSGLVDEGRRHFHFMTEDHGITPSRDHYTCMVDLLGRAGHLK 303

Query: 350 LGRQIHCVLMKTESESDL 367
              ++    M TE +S L
Sbjct: 304 EAEEL-IKDMPTEPDSVL 320



 Score = 98.6 bits (244), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 74/293 (25%), Positives = 139/293 (47%), Gaps = 23/293 (7%)

Query: 1   MSERNHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSE 60
           M +R+  +  +V   + +  Y+K G   EA+ +F  MP R+VVS  ++L+G+ ++  + +
Sbjct: 36  MVKRDRLRDDMVLNNALVDMYAKCGRTWEARCIFDSMPSRSVVSETSILAGYAKSANVED 95

Query: 61  ARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNG-- 118
           A+ +F +M E+NV++W  +I   A  G   EA +LF ++ +R+ +       G + N   
Sbjct: 96  AQVVFSQMVEKNVIAWNVLIAAYAQNGEEEEAIRLFVQL-KRDSIWPTHYTYGNVLNACG 154

Query: 119 -----ELNEARKV--------FNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERN 165
                +L +   V        F+  P  +V   N+++  Y++   + +   +FE M  R+
Sbjct: 155 NIAVLQLGQQAHVHVLKEGFRFDFGPESDVFVGNSLVDMYLKTGSIDDGAKVFERMAARD 214

Query: 166 VVTWTSMISGYCRAGEVEEGYCLFRRM----PRKNVVSWTAMIGGFAWNGFHKESLLLFI 221
            V+W +MI GY + G  ++   LF RM       + V+   ++     +G   E    F 
Sbjct: 215 NVSWNAMIVGYAQNGRAKDALHLFERMLCSNENPDSVTMIGVLSACGHSGLVDEGRRHFH 274

Query: 222 EMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVR-DEISWTSMI 273
            M    D+G   +      M++   R G L+EA+ L   +P   D + W S++
Sbjct: 275 FMTE--DHGITPSRDHYTCMVDLLGRAGHLKEAEELIKDMPTEPDSVLWASLL 325



 Score = 79.0 bits (193), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 61/266 (22%), Positives = 119/266 (44%), Gaps = 43/266 (16%)

Query: 323 MRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTES-ESDLILENCLISMYAKCG 381
           M A G  P   T S +  A    A    GRQ+H  ++K +    D++L N L+ MYAKCG
Sbjct: 1   MMATGFFPDEVTLSSVMSACAGLAAEREGRQVHAHMVKRDRLRDDMVLNNALVDMYAKCG 60

Query: 382 V-------------------------------IDNAYNIFSNMVSRDLVSWNSMVMGFSH 410
                                           +++A  +FS MV +++++WN ++  ++ 
Sbjct: 61  RTWEARCIFDSMPSRSVVSETSILAGYAKSANVEDAQVVFSQMVEKNVIAWNVLIAAYAQ 120

Query: 411 HGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWEL-FNAMFDVYKIQPGP 469
           +G   E +++F  +      P   T+  +L+AC +  ++  G +   + + + ++   GP
Sbjct: 121 NGEEEEAIRLFVQLKRDSIWPTHYTYGNVLNACGNIAVLQLGQQAHVHVLKEGFRFDFGP 180

Query: 470 EHYV----SMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCE-GNAEIAEHA 524
           E  V    S++++  + G I +  +   R+    D+  W A++   G+ + G A+ A H 
Sbjct: 181 ESDVFVGNSLVDMYLKTGSIDDGAKVFERMAAR-DNVSWNAMI--VGYAQNGRAKDALHL 237

Query: 525 AKRLLELDPLNAPAHVVLCNIYAASG 550
            +R+L  +    P  V +  + +A G
Sbjct: 238 FERMLCSN--ENPDSVTMIGVLSACG 261


>gi|296088012|emb|CBI35295.3| unnamed protein product [Vitis vinifera]
          Length = 645

 Score =  278 bits (710), Expect = 8e-72,   Method: Compositional matrix adjust.
 Identities = 182/579 (31%), Positives = 294/579 (50%), Gaps = 58/579 (10%)

Query: 37  MPQRNVV--SYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLA----DAGRVC 90
           MP R  V  +Y  +L   +Q+  L+EA+++ +   +    + ++++  L        +V 
Sbjct: 1   MPLRFEVKNNYLHLLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVV 60

Query: 91  EARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCM 150
            AR+LF+E+P  +V+ WN ++     NG  + A  +++SM    V          ++ C 
Sbjct: 61  LARRLFDEIPNPSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACS 120

Query: 151 MGEAIVLFEEME--------ERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTA 202
              AI    E+         E +V   T+++  Y + G + E   LF  M  ++VV+W A
Sbjct: 121 GLLAIEDGVEIHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNA 180

Query: 203 MIGGFAWNGFHKESLLLFIEMK--GICDNGNNCNVQSCNSMINGYIRFGR-LEEAQNLFD 259
           MI G +  G   +++ L ++M+  GIC N         +S I G +   + L  A+ +FD
Sbjct: 181 MIAGCSLYGLCDDAVQLIMQMQEEGICPN---------SSTIVGVLPTCQCLLYARKIFD 231

Query: 260 TVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYL 319
            + VR+E+SW++MI GY                               V ++   EA  +
Sbjct: 232 VMGVRNEVSWSAMIGGY-------------------------------VASDCMKEALDI 260

Query: 320 FMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAK 379
           F  M+  G+ P   T   +  A    A +  G   H  L+     +D ++ N LI MY+K
Sbjct: 261 FRMMQLSGIDPDLTTMLGVLPACSHLAALQHGFCSHGYLIVRGFATDTLICNALIDMYSK 320

Query: 380 CGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGI 439
           CG I  A  +F+ M   D+VSWN+M++G+  HGL  E L +F  +L  G  P+ +TF+ +
Sbjct: 321 CGKISFAREVFNRMDRHDIVSWNAMIIGYGIHGLGMEALGLFHDLLALGLKPDDITFICL 380

Query: 440 LSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEP 499
           LS+CSH+GLV  G   F+AM   + I P  EH + M+++LGRAG I EA  F+  +PFEP
Sbjct: 381 LSSCSHSGLVMEGRLWFDAMSRDFSIVPRMEHCICMVDILGRAGLIDEAHHFIRNMPFEP 440

Query: 500 DHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLR 559
           D RIW ALL AC     N E+ E  +K++  L P +    V+L NIY+A+GR  +   +R
Sbjct: 441 DVRIWSALLSACRI-HKNIELGEEVSKKIQSLGPESTGNFVLLSNIYSAAGRWDDAAHIR 499

Query: 560 MDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
           +     G++K+PGCSW+  NG +  F+ GD+   Q+++I
Sbjct: 500 ITQKDWGLKKIPGCSWIEINGIVHAFVGGDQSHLQLSQI 538


>gi|58743498|gb|AAW81739.1| Putative Putative Pentatricopeptide (PPR) repeat-containing protein
           [Brassica oleracea]
          Length = 968

 Score =  278 bits (710), Expect = 9e-72,   Method: Compositional matrix adjust.
 Identities = 185/631 (29%), Positives = 313/631 (49%), Gaps = 63/631 (9%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERN-VVSW 76
           ++ Y   G + +A  +F++MP+RN+VS+N+M+  F  NG   E   L  +M E++  +++
Sbjct: 226 VSFYGTNGSVSDALRVFKIMPERNLVSWNSMIRVFSDNGLSEECFLLLGQMMEKDDEIAF 285

Query: 77  TAMICGLADAGRVCEARK-----------LFEEMPERNVVSWNSMVVGLIRNGELNEARK 125
           T  +  LA    VC   +             +   ++ VV  N+++    + G +N+A+ 
Sbjct: 286 TPDVATLATVLPVCARDREIGVGKGVHGLAMKLSLDKEVVVNNALMDMYSKCGCINDAQV 345

Query: 126 VFNSMPIKNVISWNAMIAGYV-------------------------ECCMMGEAIVLFEE 160
           +F     KNV+SWN M+ G+                          E  ++    V FEE
Sbjct: 346 IFKLNNNKNVVSWNTMVGGFSAAGDIHKTFDLLRQMLAGGGDLRADEVTILNAVPVCFEE 405

Query: 161 -----MEE------------RNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAM 203
                ++E             N +   + ++ Y + G +   + +F  +  K V SW A+
Sbjct: 406 SVLPNLKELHCYSLKQEFVHNNELVANAFVASYAKCGSLSYAHRVFCSIRSKTVNSWNAL 465

Query: 204 IGGFAWNGFHKESLLLFIEMKG---ICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDT 260
           IGG++ +   + SL  + +MK    + D    C++ S  S I   ++ G+  E   L   
Sbjct: 466 IGGYSQSSDPRLSLDAYFQMKSSGLLPDLFTVCSLLSACSQIKS-LKLGK--EVHGLIIR 522

Query: 261 VPV-RDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYL 319
             + RD   + S++  Y+  G++S A+ LF  M D+  V+W  M++G +QN     A  L
Sbjct: 523 NRLERDSFVYISLLSLYIHCGELSTAHVLFDAMEDKTLVSWNTMVNGYLQNGFPERALSL 582

Query: 320 FMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAK 379
           F +M  +GV P   +   +FGA     ++ LGR+ H   +K   E +  +   +I MYAK
Sbjct: 583 FRQMVLYGVQPCEISMMSVFGACSLLPSLRLGREAHGYALKCLLEDNAFIACSVIDMYAK 642

Query: 380 CGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGI 439
            G +  ++ +F+ +  R + SWN+MVMG+  HG A E +K+FE M  +G  P+ +TFLG+
Sbjct: 643 NGSVMESFKVFNGLKERSVASWNAMVMGYGIHGRAKEAIKLFEEMQRTGHCPDELTFLGV 702

Query: 440 LSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVL-RLPFE 498
           L+AC+H+GLV  G    + M  ++ + P  +HY  +I++L RAGK+ EA +     +  E
Sbjct: 703 LTACNHSGLVHEGLTYLDQMKTLFGMNPTLKHYACVIDMLVRAGKLDEALKIATEEMSEE 762

Query: 499 PDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKL 558
           P   IW  LL +C     N E+ E  A +L   +P     +V+L N+YA SG+  E  K+
Sbjct: 763 PGVGIWNFLLSSCRI-HKNLEMGEKIAAKLFVSEPEKPENYVLLSNLYAGSGKWDEVRKV 821

Query: 559 RMDMGLKGVRKVPGCSWLMRNGGIQMFLSGD 589
           R  M    +RK  GCSW+  NG +  F++G+
Sbjct: 822 RQRMKEMSLRKDAGCSWIELNGKVFSFVAGE 852



 Score =  150 bits (378), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 104/419 (24%), Positives = 197/419 (47%), Gaps = 45/419 (10%)

Query: 41  NVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMP 100
           +V   NA++S +  NG +S+A R+F+ MPERN+VSW +MI   +D G   E   L  +M 
Sbjct: 218 DVFVSNALVSFYGTNGSVSDALRVFKIMPERNLVSWNSMIRVFSDNGLSEECFLLLGQMM 277

Query: 101 ER--------NVVSWNSMVVGLIRNGELNEARKVFN-SMPI---KNVISWNAMIAGYVEC 148
           E+        +V +  +++    R+ E+   + V   +M +   K V+  NA++  Y +C
Sbjct: 278 EKDDEIAFTPDVATLATVLPVCARDREIGVGKGVHGLAMKLSLDKEVVVNNALMDMYSKC 337

Query: 149 CMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFA 208
             + +A V+F+    +NVV+W +M+ G+  AG++ + + L R+M               A
Sbjct: 338 GCINDAQVIFKLNNNKNVVSWNTMVGGFSAAGDIHKTFDLLRQM--------------LA 383

Query: 209 WNGFHKESLLLFIEMKGICDNGN---NCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRD 265
             G  +   +  +    +C   +   N     C S+   ++                  +
Sbjct: 384 GGGDLRADEVTILNAVPVCFEESVLPNLKELHCYSLKQEFVH----------------NN 427

Query: 266 EISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRA 325
           E+   + +  Y   G +S A+ +F ++  +   +W A+I G  Q+     +   + +M++
Sbjct: 428 ELVANAFVASYAKCGSLSYAHRVFCSIRSKTVNSWNALIGGYSQSSDPRLSLDAYFQMKS 487

Query: 326 HGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDN 385
            G+ P   T   L  A     ++ LG+++H ++++   E D  +   L+S+Y  CG +  
Sbjct: 488 SGLLPDLFTVCSLLSACSQIKSLKLGKEVHGLIIRNRLERDSFVYISLLSLYIHCGELST 547

Query: 386 AYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACS 444
           A+ +F  M  + LVSWN+MV G+  +G     L +F  M+  G  P  ++ + +  ACS
Sbjct: 548 AHVLFDAMEDKTLVSWNTMVNGYLQNGFPERALSLFRQMVLYGVQPCEISMMSVFGACS 606



 Score =  112 bits (279), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 81/290 (27%), Positives = 141/290 (48%), Gaps = 18/290 (6%)

Query: 167 VTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGI 226
           V  T +I+ Y   G  ++   +F  + +KN+  W A+I  ++ N  +   L +F++M  I
Sbjct: 118 VLCTRVITMYSMCGSPDDSRSVFDALRKKNLFQWNAVISSYSRNELYHNVLEMFVKM--I 175

Query: 227 CDNG---NN----CNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSV 279
            ++G   +N    C V++C  +    ++ G L     +  T  V D     +++  Y + 
Sbjct: 176 TESGLLPDNFTFPCVVKACAGV--SEVQVG-LAVHGLVVKTRLVEDVFVSNALVSFYGTN 232

Query: 280 GQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAH----GVPPLNATF 335
           G VS+A  +F  MP+R+ V+W +MI     N L  E   L  +M          P  AT 
Sbjct: 233 GSVSDALRVFKIMPERNLVSWNSMIRVFSDNGLSEECFLLLGQMMEKDDEIAFTPDVATL 292

Query: 336 SVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVS 395
           + +         I +G+ +H + MK   + ++++ N L+ MY+KCG I++A  IF    +
Sbjct: 293 ATVLPVCARDREIGVGKGVHGLAMKLSLDKEVVVNNALMDMYSKCGCINDAQVIFKLNNN 352

Query: 396 RDLVSWNSMVMGFSHHGLANETLKVFESMLESG--THPNSVTFLGILSAC 443
           +++VSWN+MV GFS  G  ++T  +   ML  G     + VT L  +  C
Sbjct: 353 KNVVSWNTMVGGFSAAGDIHKTFDLLRQMLAGGGDLRADEVTILNAVPVC 402



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 106/454 (23%), Positives = 214/454 (47%), Gaps = 35/454 (7%)

Query: 58  LSEARRLF-EEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIR 116
           +SE+ RL  +++    V++  +M CG  D     ++R +F+ + ++N+  WN+++    R
Sbjct: 107 VSESARLSNDDVLCTRVITMYSM-CGSPD-----DSRSVFDALRKKNLFQWNAVISSYSR 160

Query: 117 NGELNEARKVFNSMPIKN-VISWNAMIAGYVECC------MMGEAI--VLFEEMEERNVV 167
           N   +   ++F  M  ++ ++  N      V+ C       +G A+  ++ +     +V 
Sbjct: 161 NELYHNVLEMFVKMITESGLLPDNFTFPCVVKACAGVSEVQVGLAVHGLVVKTRLVEDVF 220

Query: 168 TWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGIC 227
              +++S Y   G V +   +F+ MP +N+VSW +MI  F+ NG  +E  LL  +M    
Sbjct: 221 VSNALVSFYGTNGSVSDALRVFKIMPERNLVSWNSMIRVFSDNGLSEECFLLLGQMMEKD 280

Query: 228 DN-GNNCNVQSCNSMINGYIR---FGRLEEAQNLFDTVPVRDEISW-TSMIDGYLSVGQV 282
           D      +V +  +++    R    G  +    L   + +  E+    +++D Y   G +
Sbjct: 281 DEIAFTPDVATLATVLPVCARDREIGVGKGVHGLAMKLSLDKEVVVNNALMDMYSKCGCI 340

Query: 283 SNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEM-------RAHGVPPLNATF 335
           ++A  +F    +++ V+W  M+ G        +   L  +M       RA  V  LNA  
Sbjct: 341 NDAQVIFKLNNNKNVVSWNTMVGGFSAAGDIHKTFDLLRQMLAGGGDLRADEVTILNAV- 399

Query: 336 SVLFGAAGATANIDLGRQIHCVLMKTE-SESDLILENCLISMYAKCGVIDNAYNIFSNMV 394
            V F  +    N+   +++HC  +K E   ++ ++ N  ++ YAKCG +  A+ +F ++ 
Sbjct: 400 PVCFEES-VLPNL---KELHCYSLKQEFVHNNELVANAFVASYAKCGSLSYAHRVFCSIR 455

Query: 395 SRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWE 454
           S+ + SWN+++ G+S       +L  +  M  SG  P+  T   +LSACS    +  G E
Sbjct: 456 SKTVNSWNALIGGYSQSSDPRLSLDAYFQMKSSGLLPDLFTVCSLLSACSQIKSLKLGKE 515

Query: 455 LFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEA 488
           + + +    +++     Y+S+++L    G++  A
Sbjct: 516 V-HGLIIRNRLERDSFVYISLLSLYIHCGELSTA 548



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 56/189 (29%), Positives = 90/189 (47%), Gaps = 12/189 (6%)

Query: 16  SSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVS 75
           S ++ Y   G +  A  LF  M  + +VS+N M++G+LQNG    A  LF +M    V  
Sbjct: 534 SLLSLYIHCGELSTAHVLFDAMEDKTLVSWNTMVNGYLQNGFPERALSLFRQMVLYGVQP 593

Query: 76  WTAMICGLADAGRVCEARKLFEE--------MPERNVVSWNSMVVGLIRNGELNEARKVF 127
               +  +  A  +  + +L  E        + E N     S++    +NG + E+ KVF
Sbjct: 594 CEISMMSVFGACSLLPSLRLGREAHGYALKCLLEDNAFIACSVIDMYAKNGSVMESFKVF 653

Query: 128 NSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEER----NVVTWTSMISGYCRAGEVE 183
           N +  ++V SWNAM+ GY       EAI LFEEM+      + +T+  +++    +G V 
Sbjct: 654 NGLKERSVASWNAMVMGYGIHGRAKEAIKLFEEMQRTGHCPDELTFLGVLTACNHSGLVH 713

Query: 184 EGYCLFRRM 192
           EG     +M
Sbjct: 714 EGLTYLDQM 722



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 43/152 (28%), Positives = 84/152 (55%), Gaps = 7/152 (4%)

Query: 341 AAGATANIDLGRQIHCVLMKTESES-DLILENCLISMYAKCGVIDNAYNIFSNMVSRDLV 399
           A+G   +I LGR+IH ++ ++   S D +L   +I+MY+ CG  D++ ++F  +  ++L 
Sbjct: 90  ASGRRKDIQLGRKIHQLVSESARLSNDDVLCTRVITMYSMCGSPDDSRSVFDALRKKNLF 149

Query: 400 SWNSMVMGFSHHGLANETLKVFESML-ESGTHPNSVTFLGILSACSHAGLVSRGWELFNA 458
            WN+++  +S + L +  L++F  M+ ESG  P++ TF  ++ AC+    V  G  +   
Sbjct: 150 QWNAVISSYSRNELYHNVLEMFVKMITESGLLPDNFTFPCVVKACAGVSEVQVGLAVHGL 209

Query: 459 MFDVYKIQPGPEHYVS--MINLLGRAGKIKEA 488
              V K +   + +VS  +++  G  G + +A
Sbjct: 210 ---VVKTRLVEDVFVSNALVSFYGTNGSVSDA 238



 Score = 50.1 bits (118), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 34/120 (28%), Positives = 63/120 (52%), Gaps = 9/120 (7%)

Query: 16  SSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPER---- 71
           S I  Y+K G + E+  +F  + +R+V S+NAM+ G+  +GR  EA +LFEEM       
Sbjct: 635 SVIDMYAKNGSVMESFKVFNGLKERSVASWNAMVMGYGIHGRAKEAIKLFEEMQRTGHCP 694

Query: 72  NVVSWTAMICGLADAGRVCEARKLFEEMP-----ERNVVSWNSMVVGLIRNGELNEARKV 126
           + +++  ++     +G V E     ++M         +  +  ++  L+R G+L+EA K+
Sbjct: 695 DELTFLGVLTACNHSGLVHEGLTYLDQMKTLFGMNPTLKHYACVIDMLVRAGKLDEALKI 754


>gi|414869795|tpg|DAA48352.1| TPA: hypothetical protein ZEAMMB73_382586 [Zea mays]
          Length = 687

 Score =  277 bits (709), Expect = 9e-72,   Method: Compositional matrix adjust.
 Identities = 154/453 (33%), Positives = 234/453 (51%), Gaps = 40/453 (8%)

Query: 139 NAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVV 198
           NA+I  Y +   + +A  +F+EM  R+VV+W + ++   R GEV+    +F  MP K+ V
Sbjct: 240 NALIDAYSKNQGLSDAKKVFDEMTTRDVVSWNTAMAAMVRQGEVDAARSMFDEMPEKDTV 299

Query: 199 SWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLF 258
           SW                                      N+M++GY + G  E+A  LF
Sbjct: 300 SW--------------------------------------NTMLDGYAKAGEAEKAFELF 321

Query: 259 DTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATY 318
             +P R+ +SW++++  Y   G +  A  +F  MP ++ V WT M+S   Q  L  EA  
Sbjct: 322 QRMPGRNVVSWSTVVSAYCKKGDMEMARVIFDKMPAKNLVTWTIMVSACAQKGLVEEAGR 381

Query: 319 LFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYA 378
           LF EM    +         +  A   + ++ LG++IH  + + +     ++ N L+ M+ 
Sbjct: 382 LFTEMMDAAIELDVIAVVSILAACAESGSLALGKRIHRHVRQRKLSRSTLVCNALMDMFC 441

Query: 379 KCGVIDNAYNIF-SNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFL 437
           KCG ++ A  IF + +V +DLVSWN ++ GF+ HG   + L++F  M + G HP++VT +
Sbjct: 442 KCGCVNRADYIFDTEIVEKDLVSWNIIIGGFAMHGPGEKALELFAQMKQQGFHPDAVTLI 501

Query: 438 GILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPF 497
            +LSAC+H GLV  G   F  M   Y I+P  EHY  M++LLGR G IKEA + + R+P+
Sbjct: 502 NVLSACTHMGLVEEGRRFFANMETDYGIKPQIEHYGCMVDLLGRGGLIKEAVDMIKRMPW 561

Query: 498 EPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHK 557
           EP+  IWG+LL AC     N E AE A   L  L P +A  + VL NIYA +G+  +  K
Sbjct: 562 EPNEVIWGSLLSACRL-HKNVEYAELAVNELSNLQPSSAGNYAVLSNIYAEAGKWSDMAK 620

Query: 558 LRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDK 590
            R+ M   G +K  G SW+  N     F  GD+
Sbjct: 621 ARVQMKGTGSQKTAGSSWIELNEAFHEFTVGDR 653



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 112/413 (27%), Positives = 201/413 (48%), Gaps = 19/413 (4%)

Query: 7   PKSLVVHLTSSITKYSKRGFIDEAKALFQLMP--QRNVVSYNAMLSGFLQNG----RLSE 60
           P S  +   + +  Y+       A A+F  +P  QR   +Y+ ++      G    R + 
Sbjct: 165 PSSTTLLTKTLLRAYALNSLPHAALAVFLDVPLRQRGTFTYSFLIKALAAAGLTPVRGAH 224

Query: 61  ARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGEL 120
           A  +     E   V   A+I   +    + +A+K+F+EM  R+VVSWN+ +  ++R GE+
Sbjct: 225 AHVVKLGSAEDTFVG-NALIDAYSKNQGLSDAKKVFDEMTTRDVVSWNTAMAAMVRQGEV 283

Query: 121 NEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAG 180
           + AR +F+ MP K+ +SWN M+ GY +     +A  LF+ M  RNVV+W++++S YC+ G
Sbjct: 284 DAARSMFDEMPEKDTVSWNTMLDGYAKAGEAEKAFELFQRMPGRNVVSWSTVVSAYCKKG 343

Query: 181 EVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNS 240
           ++E    +F +MP KN+V+WT M+   A  G  +E+  LF EM    D     +V +  S
Sbjct: 344 DMEMARVIFDKMPAKNLVTWTIMVSACAQKGLVEEAGRLFTEM---MDAAIELDVIAVVS 400

Query: 241 MINGYIRFGRLEEAQNLFDTVP----VRDEISWTSMIDGYLSVGQVSNAYYLFHN-MPDR 295
           ++      G L   + +   V      R  +   +++D +   G V+ A Y+F   + ++
Sbjct: 401 ILAACAESGSLALGKRIHRHVRQRKLSRSTLVCNALMDMFCKCGCVNRADYIFDTEIVEK 460

Query: 296 DAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIH 355
           D V+W  +I G   +    +A  LF +M+  G  P   T   +  A      ++ GR+  
Sbjct: 461 DLVSWNIIIGGFAMHGPGEKALELFAQMKQQGFHPDAVTLINVLSACTHMGLVEEGRRFF 520

Query: 356 CVLMKTESESDLILEN--CLISMYAKCGVIDNAYNIFSNMV-SRDLVSWNSMV 405
              M+T+      +E+  C++ +  + G+I  A ++   M    + V W S++
Sbjct: 521 AN-METDYGIKPQIEHYGCMVDLLGRGGLIKEAVDMIKRMPWEPNEVIWGSLL 572



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 64/257 (24%), Positives = 109/257 (42%), Gaps = 34/257 (13%)

Query: 316 ATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLIS 375
           A +L + +R  G      T+S L  A  A A +   R  H  ++K  S  D  + N LI 
Sbjct: 190 AVFLDVPLRQRG----TFTYSFLIKALAA-AGLTPVRGAHAHVVKLGSAEDTFVGNALID 244

Query: 376 MYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVT 435
            Y+K   + +A  +F  M +RD+VSWN+ +      G  +    +F+ M E  T    V+
Sbjct: 245 AYSKNQGLSDAKKVFDEMTTRDVVSWNTAMAAMVRQGEVDAARSMFDEMPEKDT----VS 300

Query: 436 FLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPE--HYVSMINLLGRAGKIKEAEEFVL 493
           +  +L   + AG   + +ELF  M       PG     + ++++   + G ++ A     
Sbjct: 301 WNTMLDGYAKAGEAEKAFELFQRM-------PGRNVVSWSTVVSAYCKKGDMEMARVIFD 353

Query: 494 RLPFEPDHRIWGALLGAC---GFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASG 550
           ++P + +   W  ++ AC   G  E    +        +ELD +   + +  C   A SG
Sbjct: 354 KMPAK-NLVTWTIMVSACAQKGLVEEAGRLFTEMMDAAIELDVIAVVSILAAC---AESG 409

Query: 551 ---------RHVEEHKL 558
                    RHV + KL
Sbjct: 410 SLALGKRIHRHVRQRKL 426


>gi|359489593|ref|XP_003633947.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g08510-like [Vitis vinifera]
          Length = 512

 Score =  277 bits (709), Expect = 9e-72,   Method: Compositional matrix adjust.
 Identities = 157/448 (35%), Positives = 241/448 (53%), Gaps = 10/448 (2%)

Query: 157 LFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRK----NVVSWTAMIGGFAWNGF 212
           LF+ + +  V  +  +I  Y   G   + + L+ +M  +    N  S+T +    A    
Sbjct: 38  LFDFIPKPTVFLYNKLIQAYSSHGPHHQCFSLYTQMCLQGCSPNEHSFTFLFSACASLSS 97

Query: 213 HKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSM 272
           H++  +L         +G  C+V +  ++++ Y + G L  A+  FD + VRD  +W SM
Sbjct: 98  HQQGRMLHTH---FVKSGFGCDVFALTALVDMYAKLGLLSLARKQFDEMTVRDVPTWNSM 154

Query: 273 IDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHG-VPPL 331
           I GY   G +  A  LF  MP R+  +WTAMISG  QN  + +A  +F+ M     + P 
Sbjct: 155 IAGYARCGDLEGALELFRLMPARNVTSWTAMISGYAQNGQYAKALSMFLMMEEETEMRPN 214

Query: 332 NATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFS 391
             T + +  A      +++G +I           +L + N L+ MYA+CG ID A+ +F 
Sbjct: 215 EVTLASVLPACANLGALEVGERIEVYARGNGYFKNLYVSNALLEMYARCGRIDKAWGVFE 274

Query: 392 NMVSR-DLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVS 450
            +  R +L SWNSM+MG + HG  +E +++F  ML  G  P+ VTF+G+L AC+H G+V 
Sbjct: 275 EIDGRRNLCSWNSMIMGLAVHGRCDEAIELFYKMLREGAAPDDVTFVGVLLACTHGGMVV 334

Query: 451 RGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGA 510
            G   F +M   + I P  EHY  M++LLGRAG+++EA + +LR+P EPD  +WG LLGA
Sbjct: 335 EGQHFFESMERDFSIAPKLEHYGCMVDLLGRAGELREAHDLILRMPMEPDSVVWGTLLGA 394

Query: 511 CGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKV 570
           C F  G+ E+AE AA  L EL+P N   +V+L NIYA +GR     +LR  M    + K 
Sbjct: 395 CSF-HGHVELAEKAAGALFELEPSNPGNYVILSNIYATAGRWDGVARLRKLMKGGKITKA 453

Query: 571 PGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
            G S++   G I  F+  D+  ++  EI
Sbjct: 454 AGYSFIEEGGHIHKFIVEDRSHSRSDEI 481



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 103/423 (24%), Positives = 181/423 (42%), Gaps = 57/423 (13%)

Query: 6   HPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLF 65
           H K L+V L    +       I  A  LF  +P+  V  YN ++  +  +G   +   L+
Sbjct: 18  HTKQLIVSLLQIPS-------IPYAHKLFDFIPKPTVFLYNKLIQAYSSHGPHHQCFSLY 70

Query: 66  EEMPER----NVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELN 121
            +M  +    N  S+T +    A      + R L                   +++G   
Sbjct: 71  TQMCLQGCSPNEHSFTFLFSACASLSSHQQGRMLHTH---------------FVKSG--- 112

Query: 122 EARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGE 181
                F      +V +  A++  Y +  ++  A   F+EM  R+V TW SMI+GY R G+
Sbjct: 113 -----FGC----DVFALTALVDMYAKLGLLSLARKQFDEMTVRDVPTWNSMIAGYARCGD 163

Query: 182 VEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSM 241
           +E    LFR MP +NV SWTAMI G+A NG + ++L +F+ M+   +     N  +  S+
Sbjct: 164 LEGALELFRLMPARNVTSWTAMISGYAQNGQYAKALSMFLMMEE--ETEMRPNEVTLASV 221

Query: 242 INGYIRFGRLEEAQNL---------FDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNM 292
           +      G LE  + +         F  + V +     ++++ Y   G++  A+ +F  +
Sbjct: 222 LPACANLGALEVGERIEVYARGNGYFKNLYVSN-----ALLEMYARCGRIDKAWGVFEEI 276

Query: 293 PD-RDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLG 351
              R+  +W +MI GL  +    EA  LF +M   G  P + TF  +  A      +  G
Sbjct: 277 DGRRNLCSWNSMIMGLAVHGRCDEAIELFYKMLREGAAPDDVTFVGVLLACTHGGMVVEG 336

Query: 352 RQIHCVLMKTES-ESDLILENCLISMYAKCGVIDNAYNIFSNM-VSRDLVSWNSMVMGFS 409
           +     + +  S    L    C++ +  + G +  A+++   M +  D V W +++   S
Sbjct: 337 QHFFESMERDFSIAPKLEHYGCMVDLLGRAGELREAHDLILRMPMEPDSVVWGTLLGACS 396

Query: 410 HHG 412
            HG
Sbjct: 397 FHG 399



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 66/276 (23%), Positives = 112/276 (40%), Gaps = 46/276 (16%)

Query: 250 RLEEAQNLFDTVPVRDEISWT-SMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLV 308
           RL++ Q       +R+ I  T  +I   L +  +  A+ LF  +P      +  +I    
Sbjct: 3   RLKQIQ----AYTLRNGIEHTKQLIVSLLQIPSIPYAHKLFDFIPKPTVFLYNKLIQAYS 58

Query: 309 QNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLI 368
            +    +   L+ +M   G  P   +F+ LF A  + ++   GR +H   +K+    D+ 
Sbjct: 59  SHGPHHQCFSLYTQMCLQGCSPNEHSFTFLFSACASLSSHQQGRMLHTHFVKSGFGCDVF 118

Query: 369 LENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESML--- 425
               L+ MYAK G++  A   F  M  RD+ +WNSM+ G++  G     L++F  M    
Sbjct: 119 ALTALVDMYAKLGLLSLARKQFDEMTVRDVPTWNSMIAGYARCGDLEGALELFRLMPARN 178

Query: 426 -----------------------------ESGTHPNSVTFLGILSACSHAGLVSRGWELF 456
                                        E+   PN VT   +L AC++ G +  G  + 
Sbjct: 179 VTSWTAMISGYAQNGQYAKALSMFLMMEEETEMRPNEVTLASVLPACANLGALEVGERI- 237

Query: 457 NAMFDVYKIQPG--PEHYVS--MINLLGRAGKIKEA 488
               +VY    G     YVS  ++ +  R G+I +A
Sbjct: 238 ----EVYARGNGYFKNLYVSNALLEMYARCGRIDKA 269


>gi|242076494|ref|XP_002448183.1| hypothetical protein SORBIDRAFT_06g022570 [Sorghum bicolor]
 gi|241939366|gb|EES12511.1| hypothetical protein SORBIDRAFT_06g022570 [Sorghum bicolor]
          Length = 549

 Score =  277 bits (709), Expect = 9e-72,   Method: Compositional matrix adjust.
 Identities = 156/435 (35%), Positives = 239/435 (54%), Gaps = 33/435 (7%)

Query: 157 LFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKES 216
           +F+EM ER+VV+W +++ G    G   E   L R+M R+          GF  + F   S
Sbjct: 127 VFDEMIERDVVSWNTLVLGCAEEGRHHEALVLVRKMWRE----------GFRPDSFTLSS 176

Query: 217 LL-LFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDG 275
           +L +F E          C      S ++G+         +N FD     D    +S+ID 
Sbjct: 177 VLPIFAE----------CADVKRGSEVHGF-------AVRNGFDN----DVFVGSSLIDM 215

Query: 276 YLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATF 335
           Y +  +   +  +F N+P RD + W ++++G  QN    EA  +F  M   GV P+  TF
Sbjct: 216 YANCTRTDYSVKVFDNLPVRDPILWNSVLAGCAQNGSVEEALGIFRRMLQTGVRPVPVTF 275

Query: 336 SVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVS 395
           S L    G  A++  G+Q+H  +++   E ++ + + LI MY KCG I  A++IF  M S
Sbjct: 276 SSLIPVCGNLASLRFGKQLHAYVIRGGFEDNVFISSSLIDMYCKCGEISIAHHIFDRMCS 335

Query: 396 RDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWEL 455
            D+VSW +M+MG++ HG A E L +FE M      PN +TFL +L+ACSHAGLV +GW+ 
Sbjct: 336 PDVVSWTAMIMGYALHGPAREALVLFERMELGNAKPNHITFLAVLTACSHAGLVDKGWKY 395

Query: 456 FNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCE 515
           F +M D Y I P  EH  ++ ++LGRAG++ EA  F+ ++  +P   +W  LL AC    
Sbjct: 396 FKSMSDHYGIVPTLEHCAALADILGRAGELDEAYNFISKMQIKPTASVWSTLLRACRV-H 454

Query: 516 GNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSW 575
            N  +AE  AK+++EL+P +  +HVVL N+Y+ASGR  E   LR  M  KG++K P CSW
Sbjct: 455 KNTMLAEEVAKKIMELEPRSIGSHVVLSNMYSASGRWNEAAHLRKSMRKKGMKKDPACSW 514

Query: 576 LMRNGGIQMFLSGDK 590
           +     + +F++ D+
Sbjct: 515 IEVKNKLHVFVAHDR 529



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 83/328 (25%), Positives = 136/328 (41%), Gaps = 112/328 (34%)

Query: 58  LSEARRLFEEMPERNVVSWTAMICGLADAGRVCEA----RKLFEE------------MP- 100
           L   R++F+EM ER+VVSW  ++ G A+ GR  EA    RK++ E            +P 
Sbjct: 121 LESVRKVFDEMIERDVVSWNTLVLGCAEEGRHHEALVLVRKMWREGFRPDSFTLSSVLPI 180

Query: 101 --ERNVVSWNSMVVGL-IRNGELNE-------------------ARKVFNSMPIKNVISW 138
             E   V   S V G  +RNG  N+                   + KVF+++P+++ I W
Sbjct: 181 FAECADVKRGSEVHGFAVRNGFDNDVFVGSSLIDMYANCTRTDYSVKVFDNLPVRDPILW 240

Query: 139 NAMIAGYVECCMMGEAIVLFEEME------------------------------------ 162
           N+++AG  +   + EA+ +F  M                                     
Sbjct: 241 NSVLAGCAQNGSVEEALGIFRRMLQTGVRPVPVTFSSLIPVCGNLASLRFGKQLHAYVIR 300

Query: 163 ---ERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLL 219
              E NV   +S+I  YC+ GE+   + +F RM   +VVSWTAMI G+A +G  +E+L+L
Sbjct: 301 GGFEDNVFISSSLIDMYCKCGEISIAHHIFDRMCSPDVVSWTAMIMGYALHGPAREALVL 360

Query: 220 FIEMK---------------------GICDNGNNC------------NVQSCNSMINGYI 246
           F  M+                     G+ D G                ++ C ++ +   
Sbjct: 361 FERMELGNAKPNHITFLAVLTACSHAGLVDKGWKYFKSMSDHYGIVPTLEHCAALADILG 420

Query: 247 RFGRLEEAQNLFDTVPVRDEIS-WTSMI 273
           R G L+EA N    + ++   S W++++
Sbjct: 421 RAGELDEAYNFISKMQIKPTASVWSTLL 448



 Score = 75.9 bits (185), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 61/194 (31%), Positives = 104/194 (53%), Gaps = 20/194 (10%)

Query: 15  TSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNV- 73
           +S I  Y+     D +  +F  +P R+ + +N++L+G  QNG + EA  +F  M +  V 
Sbjct: 210 SSLIDMYANCTRTDYSVKVFDNLPVRDPILWNSVLAGCAQNGSVEEALGIFRRMLQTGVR 269

Query: 74  ---VSWTAMI--CG-LADA--GRVCEA---RKLFEEMPERNVVSWNSMVVGLIRNGELNE 122
              V+++++I  CG LA    G+   A   R  FE+    NV   +S++    + GE++ 
Sbjct: 270 PVPVTFSSLIPVCGNLASLRFGKQLHAYVIRGGFED----NVFISSSLIDMYCKCGEISI 325

Query: 123 ARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEME----ERNVVTWTSMISGYCR 178
           A  +F+ M   +V+SW AMI GY       EA+VLFE ME    + N +T+ ++++    
Sbjct: 326 AHHIFDRMCSPDVVSWTAMIMGYALHGPAREALVLFERMELGNAKPNHITFLAVLTACSH 385

Query: 179 AGEVEEGYCLFRRM 192
           AG V++G+  F+ M
Sbjct: 386 AGLVDKGWKYFKSM 399


>gi|359484341|ref|XP_002280538.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Vitis vinifera]
 gi|297738773|emb|CBI28018.3| unnamed protein product [Vitis vinifera]
          Length = 695

 Score =  277 bits (709), Expect = 9e-72,   Method: Compositional matrix adjust.
 Identities = 168/569 (29%), Positives = 289/569 (50%), Gaps = 75/569 (13%)

Query: 103 NVVSWNSMVVGLIRNGELNEARKVFNSMPI-----KNVISWNAMIAGYVECCMMGEAIVL 157
           N  S+  +++  +R+ ++ +A+++   M +      +    N ++  Y +   + +A  L
Sbjct: 21  NSESYTRLLLQCVRSNDVVQAKRLQTHMDLHLYQPTDTFLQNRLLHLYAKSGNLSDARDL 80

Query: 158 FEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESL 217
           F++M  R+V +W +M+S Y ++G VE+   +F +M   + VS+  +I GF+ NG   ++L
Sbjct: 81  FDKMSRRDVFSWNAMLSAYSKSGNVEDLRAVFDQMSVHDAVSYNTVIAGFSGNGCSSQAL 140

Query: 218 LLFIEMKG----ICDNGNNCNVQSC----------------------------NSMINGY 245
             F+ M+       D  +   + +C                            N++ N Y
Sbjct: 141 EFFVRMQEEGFESTDYTHVSVLHACSQLLDIKRGKQIHGRIVATSLGESVFVWNALTNMY 200

Query: 246 IRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQ----------------------VS 283
            + G L++A+ LFD +  ++ +SW SMI GYL  GQ                      +S
Sbjct: 201 AKCGALDQARWLFDRMVNKNVVSWNSMISGYLQNGQPETCTKLFCEMQSSGLMPDQVTIS 260

Query: 284 N---AYY----------LFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPP 330
           N   AY+           F  + ++D V WT M+ G  QN    +A  LF EM    V P
Sbjct: 261 NILSAYFQCGYIDEACKTFREIKEKDKVCWTTMMVGCAQNGKEEDALLLFREMLLENVRP 320

Query: 331 LNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIF 390
            N T S +  +    A++  G+ +H   +    + DL++ + L+ MY+KCG   +A+ +F
Sbjct: 321 DNFTISSVVSSCARLASLCQGQAVHGKAVIFGVDHDLLVSSALVDMYSKCGETADAWIVF 380

Query: 391 SNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVS 450
             M++R+++SWNSM++G++ +G   E L ++E ML     P+++TF+G+LSAC HAGLV 
Sbjct: 381 KRMLTRNVISWNSMILGYAQNGKDLEALALYEEMLHENLKPDNITFVGVLSACMHAGLVE 440

Query: 451 RGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGA 510
           RG   F ++  ++ + P  +HY  MINLLGRAG + +A + +  + FEP+  IW  LL  
Sbjct: 441 RGQGYFYSISKIHGMNPTFDHYSCMINLLGRAGYMDKAVDLIKSMTFEPNCLIWSTLLSV 500

Query: 511 CGF-CEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRK 569
           C   C+ N    E AA+ L ELDP NA  +++L NIYAA GR  +   +R  M    ++K
Sbjct: 501 CRINCDVNN--GEMAARHLFELDPHNAGPYIMLSNIYAACGRWKDVAAVRSLMKNNKIKK 558

Query: 570 VPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
               SW+  +  +  F++ D+  ++  +I
Sbjct: 559 FAAYSWIEIDNQVHKFVAEDRTHSETEQI 587



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 118/518 (22%), Positives = 213/518 (41%), Gaps = 118/518 (22%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPE------- 70
           ++ YSK G +++ +A+F  M   + VSYN +++GF  NG  S+A   F  M E       
Sbjct: 96  LSAYSKSGNVEDLRAVFDQMSVHDAVSYNTVIAGFSGNGCSSQALEFFVRMQEEGFESTD 155

Query: 71  --------------------------------RNVVSWTAMICGLADAGRVCEARKLFEE 98
                                            +V  W A+    A  G + +AR LF+ 
Sbjct: 156 YTHVSVLHACSQLLDIKRGKQIHGRIVATSLGESVFVWNALTNMYAKCGALDQARWLFDR 215

Query: 99  MPERNVVSWNSMVVGLIRNGELNEARKVFNSMP----IKNVISWNAMIAGYVECCMMGEA 154
           M  +NVVSWNSM+ G ++NG+     K+F  M     + + ++ + +++ Y +C  + EA
Sbjct: 216 MVNKNVVSWNSMISGYLQNGQPETCTKLFCEMQSSGLMPDQVTISNILSAYFQCGYIDEA 275

Query: 155 IVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHK 214
              F E++E++ V WT+M+ G  + G+ E+   LFR M  +NV                 
Sbjct: 276 CKTFREIKEKDKVCWTTMMVGCAQNGKEEDALLLFREMLLENVRP--------------- 320

Query: 215 ESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPV----RDEISWT 270
                        DN       + +S+++   R   L + Q +     +     D +  +
Sbjct: 321 -------------DNF------TISSVVSSCARLASLCQGQAVHGKAVIFGVDHDLLVSS 361

Query: 271 SMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPP 330
           +++D Y   G+ ++A+ +F  M  R+ ++W +MI G  QN   +EA  L+ EM    + P
Sbjct: 362 ALVDMYSKCGETADAWIVFKRMLTRNVISWNSMILGYAQNGKDLEALALYEEMLHENLKP 421

Query: 331 LNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILE-NCLISMYAKCGVIDNAYNI 389
            N TF  +  A      ++ G+     + K    +      +C+I++  + G +D A ++
Sbjct: 422 DNITFVGVLSACMHAGLVERGQGYFYSISKIHGMNPTFDHYSCMINLLGRAGYMDKAVDL 481

Query: 390 FSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLV 449
             +M                           FE        PN + +  +LS C     V
Sbjct: 482 IKSM--------------------------TFE--------PNCLIWSTLLSVCRINCDV 507

Query: 450 SRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKE 487
           + G      +F++     GP  Y+ + N+    G+ K+
Sbjct: 508 NNGEMAARHLFELDPHNAGP--YIMLSNIYAACGRWKD 543



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 55/195 (28%), Positives = 102/195 (52%), Gaps = 12/195 (6%)

Query: 12  VHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPER 71
           V +++ ++ Y + G+IDEA   F+ + +++ V +  M+ G  QNG+  +A  LF EM   
Sbjct: 257 VTISNILSAYFQCGYIDEACKTFREIKEKDKVCWTTMMVGCAQNGKEEDALLLFREMLLE 316

Query: 72  NV----VSWTAMICGLADAGRVCEARKLFEEM----PERNVVSWNSMVVGLIRNGELNEA 123
           NV     + ++++   A    +C+ + +  +      + +++  +++V    + GE  +A
Sbjct: 317 NVRPDNFTISSVVSSCARLASLCQGQAVHGKAVIFGVDHDLLVSSALVDMYSKCGETADA 376

Query: 124 RKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNV----VTWTSMISGYCRA 179
             VF  M  +NVISWN+MI GY +     EA+ L+EEM   N+    +T+  ++S    A
Sbjct: 377 WIVFKRMLTRNVISWNSMILGYAQNGKDLEALALYEEMLHENLKPDNITFVGVLSACMHA 436

Query: 180 GEVEEGYCLFRRMPR 194
           G VE G   F  + +
Sbjct: 437 GLVERGQGYFYSISK 451


>gi|225441064|ref|XP_002277923.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g03800-like [Vitis vinifera]
          Length = 882

 Score =  277 bits (709), Expect = 9e-72,   Method: Compositional matrix adjust.
 Identities = 199/684 (29%), Positives = 324/684 (47%), Gaps = 110/684 (16%)

Query: 12  VHLTSS-ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMP- 69
           +HL ++ I  Y K G +  A  +F  +   NVVSY AM+SGF ++ R  +A  +F  M  
Sbjct: 105 IHLANALIVAYLKLGMVPNAYKVFVGLSCPNVVSYTAMISGFAKSNRERQAMEIFFRMRS 164

Query: 70  ---ERNVVSWTAMI------------CGL-----------------------ADAGRVCE 91
              E N  S+ A++            C L                          G +  
Sbjct: 165 SGIELNEFSFVAILTVCIRLLDLELGCQLHAIVIKMGFLNYTFVSNALMGLYGKCGYLDS 224

Query: 92  ARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMP-------------------- 131
             +LF+EMP R++ SWN+++  +++      A ++F  M                     
Sbjct: 225 VLQLFDEMPHRDIASWNTVISSVVKEMMYERAFELFRDMRRIDGFRIDHFTLSTILVAAR 284

Query: 132 --------------IK-----NVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSM 172
                         IK     N+   NA+I  Y +C  +   + LFE+M  R+V+TWT M
Sbjct: 285 GLASMVGREIHAHVIKIGFESNISVINALIRFYTKCGSIKHVVALFEKMRVRDVITWTEM 344

Query: 173 ISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLF-------IEMKG 225
           I+ Y   G  +    +F +MP +N +S+ A++ GF  NG   ++L  F       +E+  
Sbjct: 345 ITAYMEFGLTDLALEVFDKMPARNSISYNAILSGFCQNGEGSKALAFFCRMVEEGVELTD 404

Query: 226 ICDNG--NNCNV---QSCNSMINGYI-RFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSV 279
               G  N C +      +  I+G+I +FG    A                +++D     
Sbjct: 405 FTLTGVLNACGLLMEAKISKQIHGFILKFGFGSNA------------CIEAALLDMCTRC 452

Query: 280 GQVSNAYYLFHNMPDRDA--VAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSV 337
           G++++A  +F       +  + WT+MI G  +N    EA  LF + +  G   ++   S 
Sbjct: 453 GRMADAQKMFSQGSFSQSGSIIWTSMICGYARNAQPEEAISLFCQSQLEGAMVVDKVAST 512

Query: 338 -LFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSR 396
            + G  G  A  ++G+QIHC  +K+   SDL + N +I+MY+KC  +D+A  +F+ M + 
Sbjct: 513 AVLGVCGTLAFHEMGKQIHCHALKSGFLSDLGVGNSIITMYSKCSNMDDAIKVFNVMPAH 572

Query: 397 DLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSH--AGLVSRGWE 454
           D+VSWN ++ G   H   +E L V+  M ++G  P++VTF+ I+SA  H  + LV     
Sbjct: 573 DIVSWNGLIAGHLLHRQGDEALSVWSKMEKAGIKPDTVTFVLIISAYRHTNSNLVDNCRR 632

Query: 455 LFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFC 514
           LF +M  +Y I P  EHY S++ +LG  G ++EAEE + ++P EP+  +W ALL AC   
Sbjct: 633 LFLSMKTIYHIDPTVEHYTSLVGVLGYWGLLEEAEEMINKMPIEPEASVWRALLDACRI- 691

Query: 515 EGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCS 574
             N  I + AAK LL + PL+   ++++ N+Y+A GR      +R +M +KG RK PG S
Sbjct: 692 HSNTTIGKRAAKHLLAMKPLDPSTYILVSNLYSAYGRWHCSDMVREEMRVKGFRKHPGRS 751

Query: 575 WLMRNGGIQMFLSGDKIPAQVAEI 598
           W++    +  F + DK   Q  +I
Sbjct: 752 WIIHENKVHSFYARDKSHPQAKDI 775



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 56/249 (22%), Positives = 104/249 (41%), Gaps = 38/249 (15%)

Query: 234 NVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMP 293
           ++   N++I  Y++ G +  A  +F  +   + +S+T+M                     
Sbjct: 104 DIHLANALIVAYLKLGMVPNAYKVFVGLSCPNVVSYTAM--------------------- 142

Query: 294 DRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQ 353
                     ISG  ++    +A  +F  MR+ G+     +F  +        +++LG Q
Sbjct: 143 ----------ISGFAKSNRERQAMEIFFRMRSSGIELNEFSFVAILTVCIRLLDLELGCQ 192

Query: 354 IHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGL 413
           +H +++K    +   + N L+ +Y KCG +D+   +F  M  RD+ SWN+++       +
Sbjct: 193 LHAIVIKMGFLNYTFVSNALMGLYGKCGYLDSVLQLFDEMPHRDIASWNTVISSVVKEMM 252

Query: 414 ANETLKVFESMLE-SGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHY 472
                ++F  M    G   +  T   IL A    GL S      +A    + I+ G E  
Sbjct: 253 YERAFELFRDMRRIDGFRIDHFTLSTILVAAR--GLASMVGREIHA----HVIKIGFESN 306

Query: 473 VSMINLLGR 481
           +S+IN L R
Sbjct: 307 ISVINALIR 315



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 45/157 (28%), Positives = 78/157 (49%), Gaps = 9/157 (5%)

Query: 347 NIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVM 406
           +++L + +H  + K     D+ L N LI  Y K G++ NAY +F  +   ++VS+ +M+ 
Sbjct: 87  DVELIKAVHASIFKLAE--DIHLANALIVAYLKLGMVPNAYKVFVGLSCPNVVSYTAMIS 144

Query: 407 GFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQ 466
           GF+      + +++F  M  SG   N  +F+ IL+ C     +  G +L   +     I+
Sbjct: 145 GFAKSNRERQAMEIFFRMRSSGIELNEFSFVAILTVCIRLLDLELGCQLHAIV-----IK 199

Query: 467 PGPEHYVSMIN-LLGRAGKIKEAEEFVLRLPFEPDHR 502
            G  +Y  + N L+G  GK    +  VL+L  E  HR
Sbjct: 200 MGFLNYTFVSNALMGLYGKCGYLDS-VLQLFDEMPHR 235


>gi|224114351|ref|XP_002332376.1| predicted protein [Populus trichocarpa]
 gi|222832200|gb|EEE70677.1| predicted protein [Populus trichocarpa]
          Length = 660

 Score =  277 bits (709), Expect = 9e-72,   Method: Compositional matrix adjust.
 Identities = 170/551 (30%), Positives = 279/551 (50%), Gaps = 37/551 (6%)

Query: 54  QNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVG 113
           ++G L  AR +F ++P     +  ++I G  D     EA   ++EM  + ++        
Sbjct: 34  ESGSLQYARLVFSQIPNPTSYTCNSIIRGCTDKNLHQEALLFYQEMMVQGLIPDRYTFPS 93

Query: 114 LIRNGELNEARKVFNSMPIK-----NVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVT 168
           L ++   +   K  +    K     +  + N ++  Y  C  +  A  +F++ME++ VV+
Sbjct: 94  LFKSCRNSSEGKQIHCHSTKLGFASDTYAQNTLMNMYSNCGCLVSARKVFDKMEDKTVVS 153

Query: 169 WTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICD 228
           W +MI  + +  +  E   LF RM +   V               K + +  + +   C 
Sbjct: 154 WATMIGVHAQWDQPNEAVRLFDRMMKSENV---------------KPNEVTLVNVLTACA 198

Query: 229 NGNNCN-VQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYY 287
              +   V+  +  I+ +  FGR      + +TV          ++D Y   G V  A  
Sbjct: 199 RARDLAMVKRIHEYIDEH-GFGR----HVVLNTV----------LMDVYCKCGCVQLARD 243

Query: 288 LFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATAN 347
           LF    +++  +W  MI+G V++  + EA  LF EM+  G+     T + L  A      
Sbjct: 244 LFDKAQEKNLFSWNIMINGHVEDSNYEEALLLFREMQTKGIKGDKVTMASLLLACTHLGA 303

Query: 348 IDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMG 407
           ++LG+ +H  + K   + D+ L   L+ MYAKCG I+ A  +F  M  +D+++W ++++G
Sbjct: 304 LELGKWLHAYIKKQRIDVDVALGTALVDMYAKCGSIETAIQVFHEMPEKDVMTWTALILG 363

Query: 408 FSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQP 467
            +  G A   L+ F+ M   G  P+++TF+G+L+ACSHAG V  G   FN+M D Y IQP
Sbjct: 364 LAMCGQAENALQYFDEMHIKGVKPDAITFVGVLAACSHAGFVDEGISHFNSMSDTYGIQP 423

Query: 468 GPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKR 527
             EHY  ++++LGRAG+I EAEE +  +P  PD  + G LLGAC    GN E AE AAK+
Sbjct: 424 TIEHYGGLVDILGRAGRIAEAEELIKSMPMAPDQFVLGGLLGACRI-HGNLEAAERAAKQ 482

Query: 528 LLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLS 587
           LLE+DP ++  +V+L NIY +S +  E  + R  M  +G+RK PGCS +  +G +  F+ 
Sbjct: 483 LLEIDPYHSGTYVLLSNIYKSSKKWEEAKRTRELMAERGMRKPPGCSQIEVHGVVHEFVK 542

Query: 588 GDKIPAQVAEI 598
           GD    Q +EI
Sbjct: 543 GDSSHRQSSEI 553



 Score = 92.0 bits (227), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 75/328 (22%), Positives = 145/328 (44%), Gaps = 25/328 (7%)

Query: 41  NVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMP 100
           +  + N +++ +   G L  AR++F++M ++ VVSW  MI   A   +  EA +LF+ M 
Sbjct: 119 DTYAQNTLMNMYSNCGCLVSARKVFDKMEDKTVVSWATMIGVHAQWDQPNEAVRLFDRMM 178

Query: 101 ER-----NVVSWNSMVVGLIRNGELNEARKVFNSMPI----KNVISWNAMIAGYVECCMM 151
           +      N V+  +++    R  +L   +++   +      ++V+    ++  Y +C  +
Sbjct: 179 KSENVKPNEVTLVNVLTACARARDLAMVKRIHEYIDEHGFGRHVVLNTVLMDVYCKCGCV 238

Query: 152 GEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNG 211
             A  LF++ +E+N+ +W  MI+G+      EE   LFR M  K +      +       
Sbjct: 239 QLARDLFDKAQEKNLFSWNIMINGHVEDSNYEEALLLFREMQTKGIKGDKVTMASLLLAC 298

Query: 212 FHKESLLL------FIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRD 265
            H  +L L      +I+ + I     + +V    ++++ Y + G +E A  +F  +P +D
Sbjct: 299 THLGALELGKWLHAYIKKQRI-----DVDVALGTALVDMYAKCGSIETAIQVFHEMPEKD 353

Query: 266 EISWTSMIDGYLSVGQVSNAYYLFHNMPDR----DAVAWTAMISGLVQNELFVEATYLFM 321
            ++WT++I G    GQ  NA   F  M  +    DA+ +  +++         E    F 
Sbjct: 354 VMTWTALILGLAMCGQAENALQYFDEMHIKGVKPDAITFVGVLAACSHAGFVDEGISHFN 413

Query: 322 EMR-AHGVPPLNATFSVLFGAAGATANI 348
            M   +G+ P    +  L    G    I
Sbjct: 414 SMSDTYGIQPTIEHYGGLVDILGRAGRI 441



 Score = 86.3 bits (212), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 81/326 (24%), Positives = 144/326 (44%), Gaps = 56/326 (17%)

Query: 21  YSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPER-----NVVS 75
           YS  G +  A+ +F  M  + VVS+  M+    Q  + +EA RLF+ M +      N V+
Sbjct: 130 YSNCGCLVSARKVFDKMEDKTVVSWATMIGVHAQWDQPNEAVRLFDRMMKSENVKPNEVT 189

Query: 76  WTAMICGLADAGRVCEARKLFEEMPE----RNVVSWNSMVVGLIRNGELNEARKVFNSMP 131
              ++   A A  +   +++ E + E    R+VV    ++    + G +  AR +F+   
Sbjct: 190 LVNVLTACARARDLAMVKRIHEYIDEHGFGRHVVLNTVLMDVYCKCGCVQLARDLFDKAQ 249

Query: 132 IKNVISWNAMIAGYVECCMMGEAIVLFEEMEER--------------------------- 164
            KN+ SWN MI G+VE     EA++LF EM+ +                           
Sbjct: 250 EKNLFSWNIMINGHVEDSNYEEALLLFREMQTKGIKGDKVTMASLLLACTHLGALELGKW 309

Query: 165 ------------NVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGF 212
                       +V   T+++  Y + G +E    +F  MP K+V++WTA+I G A  G 
Sbjct: 310 LHAYIKKQRIDVDVALGTALVDMYAKCGSIETAIQVFHEMPEKDVMTWTALILGLAMCGQ 369

Query: 213 HKESLLLFIEM--KGICDNGNNC--NVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEIS 268
            + +L  F EM  KG+  +       + +C+    G++  G +    ++ DT  ++  I 
Sbjct: 370 AENALQYFDEMHIKGVKPDAITFVGVLAACSHA--GFVDEG-ISHFNSMSDTYGIQPTIE 426

Query: 269 -WTSMIDGYLSVGQVSNAYYLFHNMP 293
            +  ++D     G+++ A  L  +MP
Sbjct: 427 HYGGLVDILGRAGRIAEAEELIKSMP 452


>gi|218186186|gb|EEC68613.1| hypothetical protein OsI_36980 [Oryza sativa Indica Group]
          Length = 981

 Score =  277 bits (709), Expect = 9e-72,   Method: Compositional matrix adjust.
 Identities = 187/643 (29%), Positives = 319/643 (49%), Gaps = 61/643 (9%)

Query: 16  SSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEM------P 69
           S IT +   G + +A+ LF  M + + +S NAM+S +   G  S+   +F +M      P
Sbjct: 185 SLITMFGNLGRVQDAEKLFDRMEEHDTISRNAMISMYSHQGICSKCFLVFSDMRHHGLRP 244

Query: 70  ERNVVSWTAMICGLAD---------------------------------AGRVCEARKLF 96
           +   +     +C  AD                                 AG++ +A  LF
Sbjct: 245 DATTLCSLMSVCASADHFSHGSGIHSLCLRSSLDSSVTVINALVNMYSAAGKLSDAEFLF 304

Query: 97  EEMPERNVVSWNSMVVGLIRNGELNEARK----VFNSMPIKNVISWNAMIA-----GYVE 147
             M  R+++SWN+M+   ++N    +A K    +F++  I N +++++ +      G + 
Sbjct: 305 WNMSRRDLISWNTMISSYVQNCNSTDALKTLGQLFHTNEIPNHLTFSSALGACSSPGALI 364

Query: 148 CCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGF 207
              M  AIVL   ++ RN++   S+I+ Y +   +E+   +F+ MP  +VVS+  +IGG+
Sbjct: 365 DGKMVHAIVLQLSLQ-RNLLVGNSLITMYGKCNSMEDAEKVFQSMPTHDVVSYNVLIGGY 423

Query: 208 AW--NGFHKESLLLFIEMKGICDNG-NNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVR 264
           A   +G     +  +I   GI  N     N+    +  N    +GR   A  +  T  + 
Sbjct: 424 AVLEDGTKAMQVFSWIRSAGIKPNYITMINIHGSFTSSNDLHNYGRPLHAY-IIRTGFLS 482

Query: 265 DEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMR 324
           DE    S+I  Y   G + ++  +F+++ +++ V+W A+I+   Q     EA  LF++M+
Sbjct: 483 DEYVANSLITMYAKCGNLESSTNIFNSITNKNIVSWNAIIAANAQLGHGEEALKLFIDMQ 542

Query: 325 AHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVID 384
             G        +    +  + A+++ G Q+H + MK+  +SD  + N  + MY KCG ++
Sbjct: 543 HAGNKLDRVCLAECLSSCASLASLEEGMQLHGLGMKSGLDSDSYVVNAAMDMYGKCGKMN 602

Query: 385 NAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACS 444
               +  +   R    WN+++ G++ +G   E  + F+ M+  G  P+ VTF+ +LSACS
Sbjct: 603 EMLQMVPDQAIRPQQCWNTLISGYAKYGYFKEAEETFKQMVAMGRKPDYVTFVALLSACS 662

Query: 445 HAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIW 504
           HAGLV +G + +N+M   + + PG +H V +++LLGR G+  EAE F+  +P  P+  IW
Sbjct: 663 HAGLVDKGIDYYNSMASSFGVSPGIKHCVCIVDLLGRLGRFAEAERFIEEMPVLPNDLIW 722

Query: 505 GALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGL 564
            +LL +      N EI   AAK+LLELDP +  A+V+L N+YA + R V+  KLR  M  
Sbjct: 723 RSLLSS-SRTHKNLEIGRKAAKKLLELDPFDDSAYVLLSNLYATNARWVDVDKLRSHMKT 781

Query: 565 KGVRKVPGCSWLMRNGGIQMFLSGD-------KIPAQVAEILL 600
             + K P CSWL     +  F  GD       KI A++ E+LL
Sbjct: 782 ININKRPACSWLKLKNEVSTFGIGDRGHKHAEKIYAKLDEMLL 824



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 156/663 (23%), Positives = 267/663 (40%), Gaps = 185/663 (27%)

Query: 1   MSERNHPKSLVVHLTSSITKYSKRGFIDEA---KALFQLMPQR-----NVVSYNAMLSGF 52
           M ER  P S    L S +T   +RG  DE     A    +  R     NV    A+L  +
Sbjct: 32  MRERGVPLSGFA-LASLVTACERRGR-DEGIACGAAIHALTHRAGLMGNVYIGTALLHLY 89

Query: 53  LQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEM------------- 99
              G +S+ARRLF EMPERNVVSWTA++  L+  G + E  + + +M             
Sbjct: 90  GSRGIVSDARRLFWEMPERNVVSWTALMVALSSNGYLEETLRAYRQMRREGVPCNANAFA 149

Query: 100 -------------PERNVVSW-------------NSMVVGLIRNGELNEARKVFNSMPIK 133
                        P   V S              NS++      G + +A K+F+ M   
Sbjct: 150 TVVSLCGSLENEVPGLQVASHVIVSGLQNQVSVANSLITMFGNLGRVQDAEKLFDRMEEH 209

Query: 134 NVISWNAMIAGYVECCMMGEAIVLFEEME------------------------------- 162
           + IS NAMI+ Y    +  +  ++F +M                                
Sbjct: 210 DTISRNAMISMYSHQGICSKCFLVFSDMRHHGLRPDATTLCSLMSVCASADHFSHGSGIH 269

Query: 163 --------ERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNG--- 211
                   + +V    ++++ Y  AG++ +   LF  M R++++SW  MI  +  N    
Sbjct: 270 SLCLRSSLDSSVTVINALVNMYSAAGKLSDAEFLFWNMSRRDLISWNTMISSYVQNCNST 329

Query: 212 ---------FHKESL---LLFIEMKGICDNGNNC-----------------NVQSCNSMI 242
                    FH   +   L F    G C +                     N+   NS+I
Sbjct: 330 DALKTLGQLFHTNEIPNHLTFSSALGACSSPGALIDGKMVHAIVLQLSLQRNLLVGNSLI 389

Query: 243 NGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTA 302
             Y +   +E+A+ +F ++P  D +S+  +I GY  +   + A  +F         +W  
Sbjct: 390 TMYGKCNSMEDAEKVFQSMPTHDVVSYNVLIGGYAVLEDGTKAMQVF---------SW-- 438

Query: 303 MISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANI-DLGRQIHCVLMKT 361
                               +R+ G+ P   T   + G+  ++ ++ + GR +H  +++T
Sbjct: 439 --------------------IRSAGIKPNYITMINIHGSFTSSNDLHNYGRPLHAYIIRT 478

Query: 362 ESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVF 421
              SD  + N LI+MYAKCG ++++ NIF+++ ++++VSWN+++   +  G   E LK+F
Sbjct: 479 GFLSDEYVANSLITMYAKCGNLESSTNIFNSITNKNIVSWNAIIAANAQLGHGEEALKLF 538

Query: 422 ESMLESGTHPNSVTFLGILSACSHAGLVSRGWEL---------------FNAMFDVYK-- 464
             M  +G   + V     LS+C+    +  G +L                NA  D+Y   
Sbjct: 539 IDMQHAGNKLDRVCLAECLSSCASLASLEEGMQLHGLGMKSGLDSDSYVVNAAMDMYGKC 598

Query: 465 ------IQPGPEHYV-------SMINLLGRAGKIKEAEEF---VLRLPFEPDHRIWGALL 508
                 +Q  P+  +       ++I+   + G  KEAEE    ++ +  +PD+  + ALL
Sbjct: 599 GKMNEMLQMVPDQAIRPQQCWNTLISGYAKYGYFKEAEETFKQMVAMGRKPDYVTFVALL 658

Query: 509 GAC 511
            AC
Sbjct: 659 SAC 661



 Score =  141 bits (356), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 111/417 (26%), Positives = 197/417 (47%), Gaps = 27/417 (6%)

Query: 99  MPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECC--------- 149
           MP+R   +W + V G +R G    A ++   M  + V      +A  V  C         
Sbjct: 1   MPDRTPSTWYTAVSGCVRCGRDVAAFELLRGMRERGVPLSGFALASLVTACERRGRDEGI 60

Query: 150 MMGEAIVLFEEMEER-----NVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMI 204
             G AI     +  R     NV   T+++  Y   G V +   LF  MP +NVVSWTA++
Sbjct: 61  ACGAAI---HALTHRAGLMGNVYIGTALLHLYGSRGIVSDARRLFWEMPERNVVSWTALM 117

Query: 205 GGFAWNGFHKESLLLFIEMK--GICDNGNN--CNVQSCNSMINGYIRFGRLEEAQNLFDT 260
              + NG+ +E+L  + +M+  G+  N N     V  C S+ N       L+ A ++   
Sbjct: 118 VALSSNGYLEETLRAYRQMRREGVPCNANAFATVVSLCGSLEN---EVPGLQVASHVI-V 173

Query: 261 VPVRDEIS-WTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYL 319
             +++++S   S+I  + ++G+V +A  LF  M + D ++  AMIS      +  +   +
Sbjct: 174 SGLQNQVSVANSLITMFGNLGRVQDAEKLFDRMEEHDTISRNAMISMYSHQGICSKCFLV 233

Query: 320 FMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAK 379
           F +MR HG+ P   T   L     +  +   G  IH + +++  +S + + N L++MY+ 
Sbjct: 234 FSDMRHHGLRPDATTLCSLMSVCASADHFSHGSGIHSLCLRSSLDSSVTVINALVNMYSA 293

Query: 380 CGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGI 439
            G + +A  +F NM  RDL+SWN+M+  +  +  + + LK    +  +   PN +TF   
Sbjct: 294 AGKLSDAEFLFWNMSRRDLISWNTMISSYVQNCNSTDALKTLGQLFHTNEIPNHLTFSSA 353

Query: 440 LSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLP 496
           L ACS  G +  G ++ +A+     +Q       S+I + G+   +++AE+    +P
Sbjct: 354 LGACSSPGALIDG-KMVHAIVLQLSLQRNLLVGNSLITMYGKCNSMEDAEKVFQSMP 409


>gi|224137958|ref|XP_002322694.1| predicted protein [Populus trichocarpa]
 gi|222867324|gb|EEF04455.1| predicted protein [Populus trichocarpa]
          Length = 586

 Score =  277 bits (709), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 160/417 (38%), Positives = 241/417 (57%), Gaps = 6/417 (1%)

Query: 188 LFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIR 247
           +F  M  +NVVSWTAMI G++  GF  E+L LF++M       N     +  S   G+  
Sbjct: 67  VFDEMRERNVVSWTAMISGYSQRGFASEALHLFVQMLRSDTEPNEFTFATVLSSCTGFSG 126

Query: 248 F--GRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMIS 305
           F  GR +   ++F           +S++D Y   G++  A  +F  +P+RD V+ TA+IS
Sbjct: 127 FELGR-QIHSHIFKRNYENHIFVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIIS 185

Query: 306 GLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESES 365
           G  Q  L  EA  LF  ++  G+     T++ L  A    A +D G+Q+H  +++ E   
Sbjct: 186 GYAQLGLDEEALELFCRLQREGMSSNYVTYASLLTALSGLAALDHGKQVHSHVLRCELPF 245

Query: 366 DLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESML 425
            ++L+N LI MY+KCG ++ A  IF+NM  R ++SWN+M++G+S HG   E +K+F+ M 
Sbjct: 246 YVVLQNSLIDMYSKCGNLNYARKIFNNMPVRTVISWNAMLVGYSKHGKGIEVVKLFKLMR 305

Query: 426 ESG-THPNSVTFLGILSACSHAGLVSRGWELFNAMFD-VYKIQPGPEHYVSMINLLGRAG 483
           E     P+SVTFL +LS CSH GL  +G E+F+ M +   +I+ G EHY  +I+LLGRAG
Sbjct: 306 EENKVKPDSVTFLAVLSGCSHGGLEDKGLEMFDEMMNGGDEIEAGIEHYGCVIDLLGRAG 365

Query: 484 KIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLC 543
           +++EA E + ++PFEP   IWG+LLGAC     N  I E    RLLE++P NA  +V+L 
Sbjct: 366 RVEEAFELIKKMPFEPTAAIWGSLLGACRV-HSNTNIGEFVGCRLLEIEPENAGNYVILS 424

Query: 544 NIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEILL 600
           N+YA++GR  +   +R  M  K V K PG SW+  +  I  F + D+   +  E+ L
Sbjct: 425 NLYASAGRWEDVRNVRELMMEKAVIKEPGRSWIELDQTIHTFYASDRSHPRREEVFL 481



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 107/401 (26%), Positives = 176/401 (43%), Gaps = 75/401 (18%)

Query: 61  ARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEM----PERNVVSWNSMVVGLIR 116
           AR +F+EM ERNVVSWTAMI G +  G   EA  LF +M     E N  ++ +++     
Sbjct: 64  ARHVFDEMRERNVVSWTAMISGYSQRGFASEALHLFVQMLRSDTEPNEFTFATVLSSCTG 123

Query: 117 NGELNEARKVFNSMPIKN----VISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSM 172
                  R++ + +  +N    +   ++++  Y +   + EA  +FE + ER+VV+ T++
Sbjct: 124 FSGFELGRQIHSHIFKRNYENHIFVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAI 183

Query: 173 ISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGN- 231
           ISGY + G  EE   LF R+ R+          G + N     SLL  +      D+G  
Sbjct: 184 ISGYAQLGLDEEALELFCRLQRE----------GMSSNYVTYASLLTALSGLAALDHGKQ 233

Query: 232 -NCNVQSC---------NSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQ 281
            + +V  C         NS+I+ Y + G L  A+ +F+ +PVR  ISW +M+ GY   G+
Sbjct: 234 VHSHVLRCELPFYVVLQNSLIDMYSKCGNLNYARKIFNNMPVRTVISWNAMLVGYSKHGK 293

Query: 282 VSNAYYLFHNMPDR-----DAVAWTAMISGLVQNELFVEATYLFMEMRAHG--------- 327
                 LF  M +      D+V + A++SG     L  +   +F EM   G         
Sbjct: 294 GIEVVKLFKLMREENKVKPDSVTFLAVLSGCSHGGLEDKGLEMFDEMMNGGDEIEAGIEH 353

Query: 328 -------------------------VPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTE 362
                                      P  A +  L GA    +N ++G  + C L++ E
Sbjct: 354 YGCVIDLLGRAGRVEEAFELIKKMPFEPTAAIWGSLLGACRVHSNTNIGEFVGCRLLEIE 413

Query: 363 SESD---LILENCLISMYAKCGVIDNAYNIFSNMVSRDLVS 400
            E+    +IL N    +YA  G  ++  N+   M+ + ++ 
Sbjct: 414 PENAGNYVILSN----LYASAGRWEDVRNVRELMMEKAVIK 450



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 66/230 (28%), Positives = 114/230 (49%), Gaps = 7/230 (3%)

Query: 270 TSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVP 329
           T +I  Y     +  A ++F  M +R+ V+WTAMISG  Q     EA +LF++M      
Sbjct: 49  TRLIILYTKCECLGCARHVFDEMRERNVVSWTAMISGYSQRGFASEALHLFVQMLRSDTE 108

Query: 330 PLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNI 389
           P   TF+ +  +    +  +LGRQIH  + K   E+ + + + L+ MYAK G I  A  +
Sbjct: 109 PNEFTFATVLSSCTGFSGFELGRQIHSHIFKRNYENHIFVGSSLLDMYAKAGRIHEARGV 168

Query: 390 FSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLV 449
           F  +  RD+VS  +++ G++  GL  E L++F  +   G   N VT+  +L+A S    +
Sbjct: 169 FECLPERDVVSCTAIISGYAQLGLDEEALELFCRLQREGMSSNYVTYASLLTALSGLAAL 228

Query: 450 SRGWELFNAMFDVYKIQPGPEHYV---SMINLLGRAGKIKEAEEFVLRLP 496
             G ++ + +         P + V   S+I++  + G +  A +    +P
Sbjct: 229 DHGKQVHSHVLRC----ELPFYVVLQNSLIDMYSKCGNLNYARKIFNNMP 274



 Score =  105 bits (263), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 85/284 (29%), Positives = 139/284 (48%), Gaps = 45/284 (15%)

Query: 3   ERNHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEAR 62
           +RN+   + V  +S +  Y+K G I EA+ +F+ +P+R+VVS  A++SG+ Q G   EA 
Sbjct: 139 KRNYENHIFVG-SSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAL 197

Query: 63  RLF----EEMPERNVVSWTAMICGLA-----DAGRVCEARKLFEEMPERNVVSWNSMVVG 113
            LF     E    N V++ +++  L+     D G+   +  L  E+P   VV  NS++  
Sbjct: 198 ELFCRLQREGMSSNYVTYASLLTALSGLAALDHGKQVHSHVLRCELP-FYVVLQNSLIDM 256

Query: 114 LIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMI 173
             + G LN ARK+FN+MP++ VISWNAM+ GY +     E + LF+ M E N V      
Sbjct: 257 YSKCGNLNYARKIFNNMPVRTVISWNAMLVGYSKHGKGIEVVKLFKLMREENKV------ 310

Query: 174 SGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNN- 232
                               + + V++ A++ G +  G   + L +F EM     NG + 
Sbjct: 311 --------------------KPDSVTFLAVLSGCSHGGLEDKGLEMFDEMM----NGGDE 346

Query: 233 --CNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEIS-WTSMI 273
               ++    +I+   R GR+EEA  L   +P     + W S++
Sbjct: 347 IEAGIEHYGCVIDLLGRAGRVEEAFELIKKMPFEPTAAIWGSLL 390



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 47/150 (31%), Positives = 81/150 (54%), Gaps = 9/150 (6%)

Query: 351 GRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSH 410
           G+++H  ++KT     + L   LI +Y KC  +  A ++F  M  R++VSW +M+ G+S 
Sbjct: 29  GQRVHAHMIKTCYLPPVYLSTRLIILYTKCECLGCARHVFDEMRERNVVSWTAMISGYSQ 88

Query: 411 HGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPE 470
            G A+E L +F  ML S T PN  TF  +LS+C+       G ++ + +F     +   E
Sbjct: 89  RGFASEALHLFVQMLRSDTEPNEFTFATVLSSCTGFSGFELGRQIHSHIF-----KRNYE 143

Query: 471 HYV----SMINLLGRAGKIKEAEEFVLRLP 496
           +++    S++++  +AG+I EA      LP
Sbjct: 144 NHIFVGSSLLDMYAKAGRIHEARGVFECLP 173


>gi|218194084|gb|EEC76511.1| hypothetical protein OsI_14286 [Oryza sativa Indica Group]
          Length = 656

 Score =  277 bits (709), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 189/624 (30%), Positives = 293/624 (46%), Gaps = 67/624 (10%)

Query: 13  HLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERN 72
           H+ S   +    G    A A        +VV     L+  +++GRL++A  LF+ MP +N
Sbjct: 19  HVPSRRRRRVCDGLCSAAAADNGCAESPDVVLECKRLNRLVKSGRLADALDLFDRMPRKN 78

Query: 73  VVSWTAMICGLADAGRVCEARKLFEEMPERNVV----SWNSMVVGLIRNGELNEARKVFN 128
           VV+WT+++ G    GR   A  +F +M E  V     + N+ +V     G L    +V +
Sbjct: 79  VVAWTSVMSGCTRNGRPEAALAMFADMVESGVAPNDFACNAALVACADLGALRAGEQV-H 137

Query: 129 SMPIKNVISWNA-----MIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVE 183
           S+ ++   + +A     +I  Y  C  +  A  +F+ M+  +VV +TS+IS +CR GE E
Sbjct: 138 SLAVRAGFAGDAWIGSCLIEMYSRCGSLPAAKEVFDRMDSPDVVGYTSLISAFCRNGEFE 197

Query: 184 ------------------------------------EGYCLFRRMPR-KNVVSWTAMIGG 206
                                                GY + +   R ++V S TA+I  
Sbjct: 198 LAAEALIQMLKQGLKPNEHTMTTILTACPRVLGQQIHGYLIKKIGLRSQSVYSSTALIDF 257

Query: 207 FAWN-GFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRD 265
           ++ N G       L I + G C                G I  GR      +   +    
Sbjct: 258 YSRNEGVDPNEFALSIVL-GAC----------------GSIGLGRQLHCSAIKHDLITDI 300

Query: 266 EISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRA 325
            +S  +++  Y   G V     + + + + D V+WT  IS   QN    +A  L  +M +
Sbjct: 301 RVS-NALLSMYGRTGLVEELEAMLNKIENPDLVSWTTAISANFQNGFGEKAIALLCQMHS 359

Query: 326 HGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDN 385
            G  P    FS +  +    A++D G Q HC+ +K   +S++   N LI+MY+KCG + +
Sbjct: 360 EGFTPNGYAFSSVLSSCADVASLDQGMQFHCLALKLGCDSEICTGNALINMYSKCGQMGS 419

Query: 386 AYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSH 445
           A   F  M + D+ SWNS++ G + HG AN+ L+VF  M  +G  P+  TFLG+L  C+H
Sbjct: 420 ARLAFDVMHTHDVTSWNSLIHGHAQHGDANKALEVFSKMRSNGIKPDDSTFLGVLMGCNH 479

Query: 446 AGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWG 505
           +G+V  G   F  M D Y   P P HY  MI++LGR G+  EA   +  +PFEPD  IW 
Sbjct: 480 SGMVEEGELFFRLMIDQYSFTPAPSHYACMIDMLGRNGRFDEALRMINDMPFEPDALIWK 539

Query: 506 ALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLK 565
            LL +C     N +I + AA RL+EL   ++ ++V++ NIYA  G   +  K+R  M   
Sbjct: 540 TLLASCKL-HRNLDIGKLAADRLMELSDRDSASYVLMSNIYAMHGEWEDARKVRRRMDET 598

Query: 566 GVRKVPGCSWLMRNGGIQMFLSGD 589
           GV+K  GCSW+  N  +  F S D
Sbjct: 599 GVKKDAGCSWIEINNEVHTFASRD 622


>gi|357129835|ref|XP_003566566.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g05340-like [Brachypodium distachyon]
          Length = 614

 Score =  277 bits (709), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 167/529 (31%), Positives = 273/529 (51%), Gaps = 17/529 (3%)

Query: 73  VVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVF----- 127
           +V+W A++   A  GR  EA ++F+EM  R+ VSWNS++        L++ R++      
Sbjct: 55  LVAWNALVSMYARCGRHAEAARVFDEMRIRDSVSWNSLIGSSGAEDALSQFRRMLRSSSS 114

Query: 128 -------NSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAG 180
                  +      V+S  A  A    C M+   +V      E  V    ++++ Y    
Sbjct: 115 PGGGVSCDHATFTTVLSACAREASLPTCAMVHGLVV--SRGFEAEVSVGNALVTAYFECE 172

Query: 181 EVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNS 240
                   F  M  +NV++WTAMI G A    +K+S++LF +M+   D  N+    S   
Sbjct: 173 SPGSAERAFHGMAERNVITWTAMISGMAREELYKDSIVLFQQMRRTVD-ANSATYSSSLL 231

Query: 241 MINGYIRFGRLEEAQNLFDTVPVRDEISWTS-MIDGYLSVGQVSNAYYLFHNMPDRDAVA 299
              G +     ++   L     +  ++   S ++D Y   G + +   +F      D ++
Sbjct: 232 ACAGSLALKEGQQIHGLVVKAGLETDLHVESGLMDLYSKCGLMEDTLSVFRLCRQPDEIS 291

Query: 300 WTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLM 359
            T ++ G  QN L  +A  LF EM   G+       S + GA GA+A   LG+QIH +++
Sbjct: 292 LTVILVGFAQNGLEEKAFELFAEMAGEGILIDTNMVSAVLGAFGASAPFALGKQIHALVI 351

Query: 360 KTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLK 419
           K     ++ + N LI+MY+KCG ++ +  +F+   S++ +SWNS++  F+ HG  +E  K
Sbjct: 352 KKCFGRNIYVCNGLINMYSKCGELEESIQVFNETPSKNSISWNSIIAAFARHGQGSEVFK 411

Query: 420 VFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLL 479
           +FESM   G +P  VTFL +L  CSH G   +G E+ N+M   Y I P  EHY  ++++L
Sbjct: 412 LFESMKADGANPTDVTFLSLLHGCSHVGSAKKGLEILNSMSSEYGILPRVEHYACVVDML 471

Query: 480 GRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAH 539
           GRAG +++A  F+   PF+    +W AL+GAC F  GN+EI ++AA++LL LDP +  A+
Sbjct: 472 GRAGLLEDARSFIEDGPFKDSALLWQALMGACSF-RGNSEIGKYAAEKLLHLDPDSPAAY 530

Query: 540 VVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSG 588
           V+L NIY++ GR  +  ++   M   G+RK  G SW+     +  F+ G
Sbjct: 531 VLLSNIYSSEGRWDDRARVMKSMREMGLRKDTGKSWIELEKEVHSFVVG 579



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 87/390 (22%), Positives = 170/390 (43%), Gaps = 67/390 (17%)

Query: 46  NAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMP---ER 102
           NA+++ + +      A R F  M ERNV++WTAMI G+A      ++  LF++M    + 
Sbjct: 162 NALVTAYFECESPGSAERAFHGMAERNVITWTAMISGMAREELYKDSIVLFQQMRRTVDA 221

Query: 103 NVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAG-----YVECCMMGEAIVL 157
           N  +++S ++    +  L E +++ + + +K  +  +  +       Y +C +M + + +
Sbjct: 222 NSATYSSSLLACAGSLALKEGQQI-HGLVVKAGLETDLHVESGLMDLYSKCGLMEDTLSV 280

Query: 158 FEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMI-------GGFAWN 210
           F    + + ++ T ++ G+ + G  E+ + LF  M  + ++  T M+       G  A  
Sbjct: 281 FRLCRQPDEISLTVILVGFAQNGLEEKAFELFAEMAGEGILIDTNMVSAVLGAFGASAPF 340

Query: 211 GFHKESLLLFIEMKGICDNGNNC---NVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEI 267
              K+   L I+          C   N+  CN +IN Y + G LEE+  +F+  P ++ I
Sbjct: 341 ALGKQIHALVIK---------KCFGRNIYVCNGLINMYSKCGELEESIQVFNETPSKNSI 391

Query: 268 SWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHG 327
           SW S+I  +   GQ S  + LF +                               M+A G
Sbjct: 392 SWNSIIAAFARHGQGSEVFKLFES-------------------------------MKADG 420

Query: 328 VPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLI--LEN--CLISMYAKCGVI 383
             P + TF  L        +   G +I   L    SE  ++  +E+  C++ M  + G++
Sbjct: 421 ANPTDVTFLSLLHGCSHVGSAKKGLEI---LNSMSSEYGILPRVEHYACVVDMLGRAGLL 477

Query: 384 DNAYNIFSNMVSRD-LVSWNSMVMGFSHHG 412
           ++A +   +   +D  + W +++   S  G
Sbjct: 478 EDARSFIEDGPFKDSALLWQALMGACSFRG 507



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 69/254 (27%), Positives = 113/254 (44%), Gaps = 30/254 (11%)

Query: 12  VHLTSSITK-YSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPE 70
           +H+ S +   YSK G +++  ++F+L  Q + +S   +L GF QNG   +A  LF EM  
Sbjct: 258 LHVESGLMDLYSKCGLMEDTLSVFRLCRQPDEISLTVILVGFAQNGLEEKAFELFAEMAG 317

Query: 71  RNVVSWTAMICGLADAGRVCEARKLFEEMPE--------RNVVSWNSMVVGLIRNGELNE 122
             ++  T M+  +  A        L +++          RN+   N ++    + GEL E
Sbjct: 318 EGILIDTNMVSAVLGAFGASAPFALGKQIHALVIKKCFGRNIYVCNGLINMYSKCGELEE 377

Query: 123 ARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNV----VTWTSMISGYCR 178
           + +VFN  P KN ISWN++IA +       E   LFE M+        VT+ S++ G   
Sbjct: 378 SIQVFNETPSKNSISWNSIIAAFARHGQGSEVFKLFESMKADGANPTDVTFLSLLHGCSH 437

Query: 179 AGEVEEGYCLFRRM-------PR-KNVVSWTAMIG---------GFAWNGFHKESLLLFI 221
            G  ++G  +   M       PR ++      M+G          F  +G  K+S LL+ 
Sbjct: 438 VGSAKKGLEILNSMSSEYGILPRVEHYACVVDMLGRAGLLEDARSFIEDGPFKDSALLWQ 497

Query: 222 EMKGICDNGNNCNV 235
            + G C    N  +
Sbjct: 498 ALMGACSFRGNSEI 511



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 71/339 (20%), Positives = 143/339 (42%), Gaps = 55/339 (16%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMP---ERNVV 74
           +T Y +      A+  F  M +RNV+++ AM+SG  +     ++  LF++M    + N  
Sbjct: 165 VTAYFECESPGSAERAFHGMAERNVITWTAMISGMAREELYKDSIVLFQQMRRTVDANSA 224

Query: 75  SWTAMI-------------------------------CGLADAGRVC----EARKLFEEM 99
           ++++ +                                GL D    C    +   +F   
Sbjct: 225 TYSSSLLACAGSLALKEGQQIHGLVVKAGLETDLHVESGLMDLYSKCGLMEDTLSVFRLC 284

Query: 100 PERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIA------GYVECCMMGE 153
            + + +S   ++VG  +NG   +A ++F  M  + ++    M++      G      +G+
Sbjct: 285 RQPDEISLTVILVGFAQNGLEEKAFELFAEMAGEGILIDTNMVSAVLGAFGASAPFALGK 344

Query: 154 AI--VLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNG 211
            I  ++ ++   RN+     +I+ Y + GE+EE   +F   P KN +SW ++I  FA +G
Sbjct: 345 QIHALVIKKCFGRNIYVCNGLINMYSKCGELEESIQVFNETPSKNSISWNSIIAAFARHG 404

Query: 212 FHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEI---- 267
              E   LF  MK   D  N  +V +  S+++G    G  ++   + +++     I    
Sbjct: 405 QGSEVFKLFESMKA--DGANPTDV-TFLSLLHGCSHVGSAKKGLEILNSMSSEYGILPRV 461

Query: 268 -SWTSMIDGYLSVGQVSNAYYLFHNMPDRD-AVAWTAMI 304
             +  ++D     G + +A     + P +D A+ W A++
Sbjct: 462 EHYACVVDMLGRAGLLEDARSFIEDGPFKDSALLWQALM 500


>gi|356519999|ref|XP_003528655.1| PREDICTED: pentatricopeptide repeat-containing protein At2g36980,
           mitochondrial-like [Glycine max]
          Length = 629

 Score =  277 bits (709), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 177/607 (29%), Positives = 304/607 (50%), Gaps = 20/607 (3%)

Query: 8   KSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEE 67
           +S +   T  I   ++ G I +A+ LF  +P ++ V++NAML+ +   G   ++  LF  
Sbjct: 2   RSYLFRTTPKIVALARSGQISDARKLFDEIPHKDSVAWNAMLTAYSHVGLYQQSLSLFGC 61

Query: 68  M------PERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVS----WNSMVVGLIRN 117
           M      P+    S     C  A A  V     L   +     +S     NS++    + 
Sbjct: 62  MRISHSKPDNFSFSAVLNACACAGASYVRFGATLHALVVVSGYLSSLPVANSLIDMYGKC 121

Query: 118 GELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYC 177
              ++ARKVF+     N ++W +++  Y   C +G A+ LF  M ER V+ W  MI G+ 
Sbjct: 122 LLPDDARKVFDETSDSNEVTWCSLMFAYANSCRLGVALELFRSMPERVVIAWNIMIVGHA 181

Query: 178 RAGEVEEGYCLFRRMP----RKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNC 233
           R GEVE    LF+ M     + +  +++A+I   A      E L   +    +  +G + 
Sbjct: 182 RRGEVEACLHLFKEMCGSLCQPDQWTFSALINACA---VSMEMLYGCMVHGFVIKSGWSS 238

Query: 234 NVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMP 293
            ++  NSM++ Y +    ++A  +F++    +++SW ++ID ++ +G    A+  F   P
Sbjct: 239 AMEVKNSMLSFYAKLECQDDAMKVFNSFGCFNQVSWNAIIDAHMKLGDTQKAFLAFQKAP 298

Query: 294 DRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQ 353
           +R+ V+WT+MI+G  +N     A  +F+++  + V   +     +  A  + A +  GR 
Sbjct: 299 ERNIVSWTSMIAGYTRNGNGELALSMFLDLTRNSVQLDDLVAGAVLHACASLAILVHGRM 358

Query: 354 IHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGL 413
           +H  +++   +  L + N L++MYAKCG I  +   F +++ +DL+SWNSM+  F  HG 
Sbjct: 359 VHGCIIRHGLDKYLYVGNSLVNMYAKCGDIKGSRLAFHDILDKDLISWNSMLFAFGLHGR 418

Query: 414 ANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYV 473
           ANE + ++  M+ SG  P+ VTF G+L  CSH GL+S G+  F +M   + +  G +H  
Sbjct: 419 ANEAICLYREMVASGVKPDEVTFTGLLMTCSHLGLISEGFAFFQSMCLEFGLSHGMDHVA 478

Query: 474 SMINLLGRAGKIKEAEEFVLRLPFEPDHRIWG--ALLGACGFCEGNAEIAEHAAKRLLEL 531
            M+++LGR G + EA     +       R      LLGAC +  G+        + L  L
Sbjct: 479 CMVDMLGRGGYVAEARSLAEKYSKTSITRTNSCEVLLGAC-YAHGDLGTGSSVGEYLKNL 537

Query: 532 DPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKI 591
           +P     +V+L N+Y ASG+  E   +R  M  +GV+KVPG SW+     +  F+SG+  
Sbjct: 538 EPEKEVGYVLLSNLYCASGKWREAEMVRKAMLDQGVKKVPGSSWIEIRNEVTSFVSGNNA 597

Query: 592 PAQVAEI 598
              +A+I
Sbjct: 598 YPYMADI 604


>gi|449443225|ref|XP_004139380.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04750,
           mitochondrial-like [Cucumis sativus]
          Length = 651

 Score =  277 bits (709), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 157/453 (34%), Positives = 255/453 (56%), Gaps = 3/453 (0%)

Query: 139 NAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVV 198
           N++I  YV+      A  LF+EM +RNVV++ +MI G+ + G +     LF  M    + 
Sbjct: 167 NSLIKRYVDNGCFECARQLFDEMSDRNVVSYNTMILGFAKVGNILGILELFHDMRSHGLE 226

Query: 199 SWT-AMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNL 257
                M+G     G   E+ L       I  +  + N+   N++++ Y++   L+ A+ +
Sbjct: 227 PDDFTMLGLLLLCGQLGETKLGKSVHAQIEKSIGSSNLILYNALLDMYVKCNELKLARKV 286

Query: 258 FDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEAT 317
           FD    +D +SW ++I GY  VG++  A  LF+ +P RD V+W ++ISG  QN  +V   
Sbjct: 287 FDGPMEKDTVSWNTIIAGYAKVGELELACDLFNQIPTRDIVSWNSLISGYAQNGDYVTVK 346

Query: 318 YLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMY 377
            LF  M A  V P   T   L  A      +D GR IH + +K  ++ +    + LI MY
Sbjct: 347 CLFTRMFAENVKPDKVTIVNLISAVAEMGALDQGRWIHGLAVKMLTKIEAFSGSALIDMY 406

Query: 378 AKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFL 437
            KCG I+ A+ IF+ +  +D+ +W +M+ GF+ HG  N+ L++F S++++ T PN VTF+
Sbjct: 407 CKCGSIERAFVIFNQIPEKDVTTWTTMITGFAFHGFGNKALELF-SVMQAETKPNDVTFV 465

Query: 438 GILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPF 497
            +L+ACSH+GLV  G ++F++M   Y I+PG EHY  +++LL R+G++ +A   + ++P 
Sbjct: 466 SVLAACSHSGLVDEGLKIFSSMKKRYSIEPGVEHYGCLVDLLCRSGRLLDAIGVIEKMPM 525

Query: 498 EPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHK 557
           EP   IWGA+L AC     N E+AE A   LL+L+P     +++L N+YA  GR      
Sbjct: 526 EPSRSIWGAVLSACRM-HRNMELAERALMELLKLEPEKEGGYILLSNVYATCGRWSYSDS 584

Query: 558 LRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDK 590
           +R  M  +GV+K+ GCS +  +G +  F + +K
Sbjct: 585 IREVMNSRGVKKIAGCSSVAVDGMVHDFTASNK 617



 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 69/255 (27%), Positives = 126/255 (49%), Gaps = 15/255 (5%)

Query: 21  YSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMI 80
           Y K   +  A+ +F    +++ VS+N +++G+ + G L  A  LF ++P R++VSW ++I
Sbjct: 274 YVKCNELKLARKVFDGPMEKDTVSWNTIIAGYAKVGELELACDLFNQIPTRDIVSWNSLI 333

Query: 81  CGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRN----GELNEARKVFNSMPIK--- 133
            G A  G     + LF  M   NV      +V LI      G L++ R + + + +K   
Sbjct: 334 SGYAQNGDYVTVKCLFTRMFAENVKPDKVTIVNLISAVAEMGALDQGRWI-HGLAVKMLT 392

Query: 134 --NVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRR 191
                S +A+I  Y +C  +  A V+F ++ E++V TWT+MI+G+   G   +   LF  
Sbjct: 393 KIEAFSGSALIDMYCKCGSIERAFVIFNQIPEKDVTTWTTMITGFAFHGFGNKALELFSV 452

Query: 192 M---PRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRF 248
           M    + N V++ +++   + +G   E L +F  MK          V+    +++   R 
Sbjct: 453 MQAETKPNDVTFVSVLAACSHSGLVDEGLKIFSSMKK--RYSIEPGVEHYGCLVDLLCRS 510

Query: 249 GRLEEAQNLFDTVPV 263
           GRL +A  + + +P+
Sbjct: 511 GRLLDAIGVIEKMPM 525


>gi|359479564|ref|XP_002274514.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 616

 Score =  277 bits (709), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 175/517 (33%), Positives = 271/517 (52%), Gaps = 52/517 (10%)

Query: 134 NVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMIS---GYCR----AGEVEEGY 186
             IS N +++   +C  + E   +  +M + N++     +S    +C     +G ++   
Sbjct: 2   TAISTNPVVSVLDKCKSLCELRQIHAQMIKTNLLNHQFTVSRLIAFCSLSGVSGGLDYAS 61

Query: 187 CLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEM-------KGI----------C-- 227
            +F R+   N   + A+I GF+      ESL+L+  M        G+          C  
Sbjct: 62  SVFSRIQHPNSFIFFALIKGFSDTSNPVESLILYARMLSCLNYSSGVEFSIPSVLKACGK 121

Query: 228 ----DNGNNCNVQSC-----------NSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSM 272
               D G   + Q             NSM+  YI FG +E A+ +FD +P RD +SW SM
Sbjct: 122 LLAFDEGRQVHGQVLKTHLWFDPFVGNSMVRMYIDFGEIELARRVFDRMPNRDVVSWNSM 181

Query: 273 IDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLN 332
           I GYL  G++  A  +F  M D+D V WT+MIS  VQN   ++A  LF EM + G+ P  
Sbjct: 182 IAGYLKAGEIELAKKVFETMSDKDVVTWTSMISAYVQNRCPMKALDLFREMLSLGLRPDG 241

Query: 333 ATFSVLFGAAGATANIDLGRQIHCVLMKTESE-SDLILENCLISMYAKCGVIDNAYNIFS 391
                +  A      ++ G+ +H  +   + E S   + + LI MY+KCG I+NAY++F 
Sbjct: 242 PAIVSVLSAIADLGFVEEGKWLHAYVSMNKIELSSGFIGSALIDMYSKCGYIENAYHVFR 301

Query: 392 NMV-SRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVS 450
           ++   R++  WNSM+ G + HGLA E L +F  M      PN +TFLG+LS CSH GLV 
Sbjct: 302 SISHRRNIGDWNSMISGLAIHGLAREALDIFVEMERMDIEPNEITFLGLLSTCSHGGLVE 361

Query: 451 RGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGA 510
            G   F +M + YKI P  +HY  MI+L GRAG++++A   +  +PFE D   W A+L A
Sbjct: 362 EGQFYFESMHEKYKIVPRIQHYGCMIDLFGRAGRLEDALGVIQNMPFEADLLAWKAILSA 421

Query: 511 CGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKV 570
                G+ EI + AA R +EL P ++ ++V+L NIYA +GR  +  K+R+ M  +GV+K+
Sbjct: 422 -SMKHGHIEIGKSAALRAIELAPDDSSSYVLLSNIYAKAGRWDDVAKIRLMMRQRGVKKI 480

Query: 571 PGCSWLMRNGGIQMFLSGD--------KIPAQVAEIL 599
            GCS ++ NG +  FL G         ++ A++AE++
Sbjct: 481 AGCSSMLVNGKVHEFLLGKELDSSYSGQVLAKIAEVV 517



 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 107/405 (26%), Positives = 185/405 (45%), Gaps = 50/405 (12%)

Query: 25  GFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMI---- 80
           G +D A ++F  +   N   + A++ GF       E+  L+  M   + +++++ +    
Sbjct: 55  GGLDYASSVFSRIQHPNSFIFFALIKGFSDTSNPVESLILYARM--LSCLNYSSGVEFSI 112

Query: 81  ------CG--LA-DAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMP 131
                 CG  LA D GR    + L   +     V  NSMV   I  GE+  AR+VF+ MP
Sbjct: 113 PSVLKACGKLLAFDEGRQVHGQVLKTHLWFDPFVG-NSMVRMYIDFGEIELARRVFDRMP 171

Query: 132 IKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRR 191
            ++V+SWN+MIAGY++   +  A  +FE M +++VVTWTSMIS Y +            R
Sbjct: 172 NRDVVSWNSMIAGYLKAGEIELAKKVFETMSDKDVVTWTSMISAYVQ-----------NR 220

Query: 192 MPRKNVVSWTAMIG-GFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGR 250
            P K +  +  M+  G   +G    S+L  I   G  + G           ++ Y+   +
Sbjct: 221 CPMKALDLFREMLSLGLRPDGPAIVSVLSAIADLGFVEEGK---------WLHAYVSMNK 271

Query: 251 LEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVA-WTAMISGLVQ 309
           +E +               +++ID Y   G + NAY++F ++  R  +  W +MISGL  
Sbjct: 272 IELSSGFIG----------SALIDMYSKCGYIENAYHVFRSISHRRNIGDWNSMISGLAI 321

Query: 310 NELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGR-QIHCVLMKTESESDLI 368
           + L  EA  +F+EM    + P   TF  L         ++ G+     +  K +    + 
Sbjct: 322 HGLAREALDIFVEMERMDIEPNEITFLGLLSTCSHGGLVEEGQFYFESMHEKYKIVPRIQ 381

Query: 369 LENCLISMYAKCGVIDNAYNIFSNM-VSRDLVSWNSMVMGFSHHG 412
              C+I ++ + G +++A  +  NM    DL++W +++     HG
Sbjct: 382 HYGCMIDLFGRAGRLEDALGVIQNMPFEADLLAWKAILSASMKHG 426


>gi|449492842|ref|XP_004159118.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g05750, chloroplastic-like [Cucumis sativus]
          Length = 525

 Score =  277 bits (709), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 151/439 (34%), Positives = 251/439 (57%), Gaps = 9/439 (2%)

Query: 166 VVTWTSMISGYCRAGEVEEGYCLFRRMP----RKNVVSWTAMIGGFAWNGFHKESLLLFI 221
           +V WTS ++ YCR G++ E    F RM       N +++  ++   A   F  ES     
Sbjct: 57  IVLWTSSLARYCRNGQLSEAAAEFTRMRLAGVEPNHITFITLLSACA--DFPSESFFFAS 114

Query: 222 EMKGI-CDNG-NNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSV 279
            + G  C  G +  +V    ++I+ Y +  +L  A+ +F  + V++ +SW +M++G++  
Sbjct: 115 SLHGYACKYGLDTGHVMVGTALIDMYSKCAQLGHARKVFYNLGVKNSVSWNTMLNGFMRN 174

Query: 280 GQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLF 339
           G++  A  LF  MP RDA++WTA+I+GL+++    +A   F +M+  GV     +   + 
Sbjct: 175 GEIELAIQLFDEMPTRDAISWTALINGLLKHGYSEQALECFHQMQRSGVAADYVSIIAVL 234

Query: 340 GAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLV 399
            A      + LG  +H  +M  E + ++ + N LI MY++CG I+ A  +F  M  R LV
Sbjct: 235 AACADLGALTLGLWVHRFVMPQEFKDNIKISNSLIDMYSRCGCIEFARQVFVKMAKRTLV 294

Query: 400 SWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAM 459
           SWNS+++GF+ +G A+E+L+ F +M + G  P+ V++ G L+ACSHAGLV++G ELF+ M
Sbjct: 295 SWNSIIVGFAVNGFADESLEFFXAMQKEGFKPDGVSYTGALTACSHAGLVNKGLELFDNM 354

Query: 460 FDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAE 519
             V+KI P  EHY  +++L GRAG++++A   +  +P +P+  + G+LL AC    G+  
Sbjct: 355 KSVHKITPRIEHYGCIVDLYGRAGRLEDALNMIEEMPMKPNEVVLGSLLAACR-THGDVN 413

Query: 520 IAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRN 579
           +AE   K L +LDP     +V+L NIYAA G+    + +R  M  +GV+K PG S +  +
Sbjct: 414 LAERLMKHLFKLDPEGDAYYVLLSNIYAAIGKWDGANNVRRTMKARGVQKKPGYSSVEID 473

Query: 580 GGIQMFLSGDKIPAQVAEI 598
           G +  F++GD   A    I
Sbjct: 474 GKVHEFVAGDNYHADADNI 492



 Score =  112 bits (279), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 87/300 (29%), Positives = 150/300 (50%), Gaps = 19/300 (6%)

Query: 15  TSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVV 74
           T+ I  YSK   +  A+ +F  +  +N VS+N ML+GF++NG +  A +LF+EMP R+ +
Sbjct: 134 TALIDMYSKCAQLGHARKVFYNLGVKNSVSWNTMLNGFMRNGEIELAIQLFDEMPTRDAI 193

Query: 75  SWTAMICGLADAGRVCEARKLFEEMPERNVVS-WNSMVVGLIRNGELNE-------ARKV 126
           SWTA+I GL   G   +A + F +M    V + + S++  L    +L          R V
Sbjct: 194 SWTALINGLLKHGYSEQALECFHQMQRSGVAADYVSIIAVLAACADLGALTLGLWVHRFV 253

Query: 127 FNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGY 186
                  N+   N++I  Y  C  +  A  +F +M +R +V+W S+I G+   G  +E  
Sbjct: 254 MPQEFKDNIKISNSLIDMYSRCGCIEFARQVFVKMAKRTLVSWNSIIVGFAVNGFADESL 313

Query: 187 CLFRRMPRKNV----VSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMI 242
             F  M ++      VS+T  +   +  G   + L LF  MK +  +     ++    ++
Sbjct: 314 EFFXAMQKEGFKPDGVSYTGALTACSHAGLVNKGLELFDNMKSV--HKITPRIEHYGCIV 371

Query: 243 NGYIRFGRLEEAQNLFDTVPVR-DEISWTSMIDGYLSVGQVSNA----YYLFHNMPDRDA 297
           + Y R GRLE+A N+ + +P++ +E+   S++    + G V+ A     +LF   P+ DA
Sbjct: 372 DLYGRAGRLEDALNMIEEMPMKPNEVVLGSLLAACRTHGDVNLAERLMKHLFKLDPEGDA 431



 Score =  105 bits (263), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 101/463 (21%), Positives = 186/463 (40%), Gaps = 94/463 (20%)

Query: 42  VVSYNAMLSGFLQNGRLSEARRLFEEMP----ERNVVSWTAMICGLADAGRVCEARKLFE 97
           +V + + L+ + +NG+LSEA   F  M     E N +++  ++   AD            
Sbjct: 57  IVLWTSSLARYCRNGQLSEAAAEFTRMRLAGVEPNHITFITLLSACAD------------ 104

Query: 98  EMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVL 157
             P  +    +S+     + G           +   +V+   A+I  Y +C  +G A  +
Sbjct: 105 -FPSESFFFASSLHGYACKYG-----------LDTGHVMVGTALIDMYSKCAQLGHARKV 152

Query: 158 FEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESL 217
           F  +  +N V+W +M++G+ R GE+E    LF  MP ++ +SWTA+I G   +G+ +++L
Sbjct: 153 FYNLGVKNSVSWNTMLNGFMRNGEIELAIQLFDEMPTRDAISWTALINGLLKHGYSEQAL 212

Query: 218 LLFIEMKGICDNGNNCNV----QSCNSMINGYIRFG----RLEEAQNLFDTVPVRDEISW 269
             F +M+      +  ++     +C  +  G +  G    R    Q   D + + +    
Sbjct: 213 ECFHQMQRSGVAADYVSIIAVLAACADL--GALTLGLWVHRFVMPQEFKDNIKISN---- 266

Query: 270 TSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVP 329
            S+ID Y   G +  A  +F  M  R  V+W ++I G   N    E+   F  M+  G  
Sbjct: 267 -SLIDMYSRCGCIEFARQVFVKMAKRTLVSWNSIIVGFAVNGFADESLEFFXAMQKEGFK 325

Query: 330 PLNATFSVLFGAAGATANIDLG-------RQIHCVLMKTESESDLILENCLISMYAKCGV 382
           P   +++    A      ++ G       + +H +  + E         C++ +Y + G 
Sbjct: 326 PDGVSYTGALTACSHAGLVNKGLELFDNMKSVHKITPRIEHYG------CIVDLYGRAGR 379

Query: 383 IDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSA 442
           +++A N+   M  +                                  PN V    +L+A
Sbjct: 380 LEDALNMIEEMPMK----------------------------------PNEVVLGSLLAA 405

Query: 443 CSHAGLVSRGWELFNAMFDVYKIQP-GPEHYVSMINLLGRAGK 484
           C   G V+    L   +F   K+ P G  +YV + N+    GK
Sbjct: 406 CRTHGDVNLAERLMKHLF---KLDPEGDAYYVLLSNIYAAIGK 445



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 109/458 (23%), Positives = 192/458 (41%), Gaps = 105/458 (22%)

Query: 1   MSERNHPKSL--VVHLTSSITKYSKRGFIDEAKALFQLMP----QRNVVSYNAMLSG--- 51
           +S + +P S+  +V  TSS+ +Y + G + EA A F  M     + N +++  +LS    
Sbjct: 45  ISSKFNPNSVDPIVLWTSSLARYCRNGQLSEAAAEFTRMRLAGVEPNHITFITLLSACAD 104

Query: 52  ------FLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVV 105
                 F  +     A +    +   +V+  TA+I   +   ++  ARK+F  +  +N V
Sbjct: 105 FPSESFFFASSLHGYACKY--GLDTGHVMVGTALIDMYSKCAQLGHARKVFYNLGVKNSV 162

Query: 106 SWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEME--- 162
           SWN+M+ G +RNGE+  A ++F+ MP ++ ISW A+I G ++     +A+  F +M+   
Sbjct: 163 SWNTMLNGFMRNGEIELAIQLFDEMPTRDAISWTALINGLLKHGYSEQALECFHQMQRSG 222

Query: 163 ------------------------------------ERNVVTWTSMISGYCRAGEVEEGY 186
                                               + N+    S+I  Y R G +E   
Sbjct: 223 VAADYVSIIAVLAACADLGALTLGLWVHRFVMPQEFKDNIKISNSLIDMYSRCGCIEFAR 282

Query: 187 CLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYI 246
            +F +M ++ +VSW ++I GFA NGF  ESL  F  M+     G   +  S    +    
Sbjct: 283 QVFVKMAKRTLVSWNSIIVGFAVNGFADESLEFFXAMQ---KEGFKPDGVSYTGALTACS 339

Query: 247 RFGRLEEAQNLFDTVPVRDEIS-----WTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWT 301
             G + +   LFD +    +I+     +  ++D Y   G++ +A  +   MP        
Sbjct: 340 HAGLVNKGLELFDNMKSVHKITPRIEHYGCIVDLYGRAGRLEDALNMIEEMP-------- 391

Query: 302 AMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKT 361
                +  NE+ + +  L    R HG                   +++L  ++   L K 
Sbjct: 392 -----MKPNEVVLGS--LLAACRTHG-------------------DVNLAERLMKHLFKL 425

Query: 362 ESESD---LILENCLISMYAKCGVIDNAYNIFSNMVSR 396
           + E D   ++L N    +YA  G  D A N+   M +R
Sbjct: 426 DPEGDAYYVLLSN----IYAAIGKWDGANNVRRTMKAR 459


>gi|449443656|ref|XP_004139593.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05750,
           chloroplastic-like [Cucumis sativus]
          Length = 525

 Score =  277 bits (709), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 151/439 (34%), Positives = 251/439 (57%), Gaps = 9/439 (2%)

Query: 166 VVTWTSMISGYCRAGEVEEGYCLFRRMP----RKNVVSWTAMIGGFAWNGFHKESLLLFI 221
           +V WTS ++ YCR G++ E    F RM       N +++  ++   A   F  ES     
Sbjct: 57  IVLWTSSLARYCRNGQLSEAAAEFTRMRLAGVEPNHITFITLLSACA--DFPSESFFFAS 114

Query: 222 EMKGI-CDNG-NNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSV 279
            + G  C  G +  +V    ++I+ Y +  +L  A+ +F  + V++ +SW +M++G++  
Sbjct: 115 SLHGYACKYGLDTGHVMVGTALIDMYSKCAQLGHARKVFYNLGVKNSVSWNTMLNGFMRN 174

Query: 280 GQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLF 339
           G++  A  LF  MP RDA++WTA+I+GL+++    +A   F +M+  GV     +   + 
Sbjct: 175 GEIELAIQLFDEMPTRDAISWTALINGLLKHGYSEQALECFHQMQRSGVAADYVSIIAVL 234

Query: 340 GAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLV 399
            A      + LG  +H  +M  E + ++ + N LI MY++CG I+ A  +F  M  R LV
Sbjct: 235 AACADLGALTLGLWVHRFVMPQEFKDNIKISNSLIDMYSRCGCIEFARQVFVKMAKRTLV 294

Query: 400 SWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAM 459
           SWNS+++GF+ +G A+E+L+ F +M + G  P+ V++ G L+ACSHAGLV++G ELF+ M
Sbjct: 295 SWNSIIVGFAVNGFADESLEFFYAMQKEGFKPDGVSYTGALTACSHAGLVNKGLELFDNM 354

Query: 460 FDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAE 519
             V+KI P  EHY  +++L GRAG++++A   +  +P +P+  + G+LL AC    G+  
Sbjct: 355 KSVHKITPRIEHYGCIVDLYGRAGRLEDALNMIEEMPMKPNEVVLGSLLAACR-THGDVN 413

Query: 520 IAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRN 579
           +AE   K L +LDP     +V+L NIYAA G+    + +R  M  +GV+K PG S +  +
Sbjct: 414 LAERLMKHLFKLDPEGDAYYVLLSNIYAAIGKWDGANNVRRTMKARGVQKKPGYSSVEID 473

Query: 580 GGIQMFLSGDKIPAQVAEI 598
           G +  F++GD   A    I
Sbjct: 474 GKVHEFVAGDNYHADADNI 492



 Score =  112 bits (279), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 87/300 (29%), Positives = 150/300 (50%), Gaps = 19/300 (6%)

Query: 15  TSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVV 74
           T+ I  YSK   +  A+ +F  +  +N VS+N ML+GF++NG +  A +LF+EMP R+ +
Sbjct: 134 TALIDMYSKCAQLGHARKVFYNLGVKNSVSWNTMLNGFMRNGEIELAIQLFDEMPTRDAI 193

Query: 75  SWTAMICGLADAGRVCEARKLFEEMPERNVVS-WNSMVVGLIRNGELNE-------ARKV 126
           SWTA+I GL   G   +A + F +M    V + + S++  L    +L          R V
Sbjct: 194 SWTALINGLLKHGYSEQALECFHQMQRSGVAADYVSIIAVLAACADLGALTLGLWVHRFV 253

Query: 127 FNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGY 186
                  N+   N++I  Y  C  +  A  +F +M +R +V+W S+I G+   G  +E  
Sbjct: 254 MPQEFKDNIKISNSLIDMYSRCGCIEFARQVFVKMAKRTLVSWNSIIVGFAVNGFADESL 313

Query: 187 CLFRRMPRKNV----VSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMI 242
             F  M ++      VS+T  +   +  G   + L LF  MK +  +     ++    ++
Sbjct: 314 EFFYAMQKEGFKPDGVSYTGALTACSHAGLVNKGLELFDNMKSV--HKITPRIEHYGCIV 371

Query: 243 NGYIRFGRLEEAQNLFDTVPVR-DEISWTSMIDGYLSVGQVSNA----YYLFHNMPDRDA 297
           + Y R GRLE+A N+ + +P++ +E+   S++    + G V+ A     +LF   P+ DA
Sbjct: 372 DLYGRAGRLEDALNMIEEMPMKPNEVVLGSLLAACRTHGDVNLAERLMKHLFKLDPEGDA 431



 Score =  105 bits (263), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 101/463 (21%), Positives = 186/463 (40%), Gaps = 94/463 (20%)

Query: 42  VVSYNAMLSGFLQNGRLSEARRLFEEMP----ERNVVSWTAMICGLADAGRVCEARKLFE 97
           +V + + L+ + +NG+LSEA   F  M     E N +++  ++   AD            
Sbjct: 57  IVLWTSSLARYCRNGQLSEAAAEFTRMRLAGVEPNHITFITLLSACAD------------ 104

Query: 98  EMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVL 157
             P  +    +S+     + G           +   +V+   A+I  Y +C  +G A  +
Sbjct: 105 -FPSESFFFASSLHGYACKYG-----------LDTGHVMVGTALIDMYSKCAQLGHARKV 152

Query: 158 FEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESL 217
           F  +  +N V+W +M++G+ R GE+E    LF  MP ++ +SWTA+I G   +G+ +++L
Sbjct: 153 FYNLGVKNSVSWNTMLNGFMRNGEIELAIQLFDEMPTRDAISWTALINGLLKHGYSEQAL 212

Query: 218 LLFIEMKGICDNGNNCNV----QSCNSMINGYIRFG----RLEEAQNLFDTVPVRDEISW 269
             F +M+      +  ++     +C  +  G +  G    R    Q   D + + +    
Sbjct: 213 ECFHQMQRSGVAADYVSIIAVLAACADL--GALTLGLWVHRFVMPQEFKDNIKISN---- 266

Query: 270 TSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVP 329
            S+ID Y   G +  A  +F  M  R  V+W ++I G   N    E+   F  M+  G  
Sbjct: 267 -SLIDMYSRCGCIEFARQVFVKMAKRTLVSWNSIIVGFAVNGFADESLEFFYAMQKEGFK 325

Query: 330 PLNATFSVLFGAAGATANIDLG-------RQIHCVLMKTESESDLILENCLISMYAKCGV 382
           P   +++    A      ++ G       + +H +  + E         C++ +Y + G 
Sbjct: 326 PDGVSYTGALTACSHAGLVNKGLELFDNMKSVHKITPRIEHYG------CIVDLYGRAGR 379

Query: 383 IDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSA 442
           +++A N+   M  +                                  PN V    +L+A
Sbjct: 380 LEDALNMIEEMPMK----------------------------------PNEVVLGSLLAA 405

Query: 443 CSHAGLVSRGWELFNAMFDVYKIQP-GPEHYVSMINLLGRAGK 484
           C   G V+    L   +F   K+ P G  +YV + N+    GK
Sbjct: 406 CRTHGDVNLAERLMKHLF---KLDPEGDAYYVLLSNIYAAIGK 445



 Score =  105 bits (261), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 109/458 (23%), Positives = 192/458 (41%), Gaps = 105/458 (22%)

Query: 1   MSERNHPKSL--VVHLTSSITKYSKRGFIDEAKALFQLMP----QRNVVSYNAMLSG--- 51
           +S + +P S+  +V  TSS+ +Y + G + EA A F  M     + N +++  +LS    
Sbjct: 45  ISSKFNPNSVDPIVLWTSSLARYCRNGQLSEAAAEFTRMRLAGVEPNHITFITLLSACAD 104

Query: 52  ------FLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVV 105
                 F  +     A +    +   +V+  TA+I   +   ++  ARK+F  +  +N V
Sbjct: 105 FPSESFFFASSLHGYACKY--GLDTGHVMVGTALIDMYSKCAQLGHARKVFYNLGVKNSV 162

Query: 106 SWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEME--- 162
           SWN+M+ G +RNGE+  A ++F+ MP ++ ISW A+I G ++     +A+  F +M+   
Sbjct: 163 SWNTMLNGFMRNGEIELAIQLFDEMPTRDAISWTALINGLLKHGYSEQALECFHQMQRSG 222

Query: 163 ------------------------------------ERNVVTWTSMISGYCRAGEVEEGY 186
                                               + N+    S+I  Y R G +E   
Sbjct: 223 VAADYVSIIAVLAACADLGALTLGLWVHRFVMPQEFKDNIKISNSLIDMYSRCGCIEFAR 282

Query: 187 CLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYI 246
            +F +M ++ +VSW ++I GFA NGF  ESL  F  M+     G   +  S    +    
Sbjct: 283 QVFVKMAKRTLVSWNSIIVGFAVNGFADESLEFFYAMQ---KEGFKPDGVSYTGALTACS 339

Query: 247 RFGRLEEAQNLFDTVPVRDEIS-----WTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWT 301
             G + +   LFD +    +I+     +  ++D Y   G++ +A  +   MP        
Sbjct: 340 HAGLVNKGLELFDNMKSVHKITPRIEHYGCIVDLYGRAGRLEDALNMIEEMP-------- 391

Query: 302 AMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKT 361
                +  NE+ + +  L    R HG                   +++L  ++   L K 
Sbjct: 392 -----MKPNEVVLGS--LLAACRTHG-------------------DVNLAERLMKHLFKL 425

Query: 362 ESESD---LILENCLISMYAKCGVIDNAYNIFSNMVSR 396
           + E D   ++L N    +YA  G  D A N+   M +R
Sbjct: 426 DPEGDAYYVLLSN----IYAAIGKWDGANNVRRTMKAR 459


>gi|449528479|ref|XP_004171232.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04750,
           mitochondrial-like [Cucumis sativus]
          Length = 586

 Score =  277 bits (709), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 157/453 (34%), Positives = 255/453 (56%), Gaps = 3/453 (0%)

Query: 139 NAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVV 198
           N++I  YV+      A  LF+EM +RNVV++ +MI G+ + G +     LF  M    + 
Sbjct: 102 NSLIKRYVDNGCFECARQLFDEMSDRNVVSYNTMILGFAKVGNILGILELFHDMRSHGLE 161

Query: 199 SWT-AMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNL 257
                M+G     G   E+ L       I  +  + N+   N++++ Y++   L+ A+ +
Sbjct: 162 PDDFTMLGLLLLCGQLGETKLGKSVHAQIEKSIGSSNLILYNALLDMYVKCNELKLARKV 221

Query: 258 FDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEAT 317
           FD    +D +SW ++I GY  VG++  A  LF+ +P RD V+W ++ISG  QN  +V   
Sbjct: 222 FDGPMEKDTVSWNTIIAGYAKVGELELACDLFNQIPTRDIVSWNSLISGYAQNGDYVTVK 281

Query: 318 YLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMY 377
            LF  M A  V P   T   L  A      +D GR IH + +K  ++ +    + LI MY
Sbjct: 282 CLFTRMFAENVKPDKVTIVNLISAVAEMGALDQGRWIHGLAVKMLTKIEAFSGSALIDMY 341

Query: 378 AKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFL 437
            KCG I+ A+ IF+ +  +D+ +W +M+ GF+ HG  N+ L++F S++++ T PN VTF+
Sbjct: 342 CKCGSIERAFVIFNQIPEKDVTTWTTMITGFAFHGFGNKALELF-SVMQAETKPNDVTFV 400

Query: 438 GILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPF 497
            +L+ACSH+GLV  G ++F++M   Y I+PG EHY  +++LL R+G++ +A   + ++P 
Sbjct: 401 SVLAACSHSGLVDEGLKIFSSMKKRYSIEPGVEHYGCLVDLLCRSGRLLDAIGVIEKMPM 460

Query: 498 EPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHK 557
           EP   IWGA+L AC     N E+AE A   LL+L+P     +++L N+YA  GR      
Sbjct: 461 EPSRSIWGAVLSACRM-HRNMELAERALMELLKLEPEKEGGYILLSNVYATCGRWSYSDS 519

Query: 558 LRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDK 590
           +R  M  +GV+K+ GCS +  +G +  F + +K
Sbjct: 520 IREVMNSRGVKKIAGCSSVAVDGMVHDFTASNK 552



 Score =  145 bits (365), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 98/361 (27%), Positives = 182/361 (50%), Gaps = 17/361 (4%)

Query: 46  NAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEM------ 99
           N+++  ++ NG    AR+LF+EM +RNVVS+  MI G A  G +    +LF +M      
Sbjct: 102 NSLIKRYVDNGCFECARQLFDEMSDRNVVSYNTMILGFAKVGNILGILELFHDMRSHGLE 161

Query: 100 PERNVVSWNSMVVGLIRNGELNEA--RKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVL 157
           P+   +    ++ G +   +L ++   ++  S+   N+I +NA++  YV+C  +  A  +
Sbjct: 162 PDDFTMLGLLLLCGQLGETKLGKSVHAQIEKSIGSSNLILYNALLDMYVKCNELKLARKV 221

Query: 158 FEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESL 217
           F+   E++ V+W ++I+GY + GE+E    LF ++P +++VSW ++I G+A NG +    
Sbjct: 222 FDGPMEKDTVSWNTIIAGYAKVGELELACDLFNQIPTRDIVSWNSLISGYAQNGDYVTVK 281

Query: 218 LLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNL----FDTVPVRDEISWTSMI 273
            LF  M    +N     V   N +I+     G L++ + +       +   +  S +++I
Sbjct: 282 CLFTRM--FAENVKPDKVTIVN-LISAVAEMGALDQGRWIHGLAVKMLTKIEAFSGSALI 338

Query: 274 DGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNA 333
           D Y   G +  A+ +F+ +P++D   WT MI+G   +    +A  LF  M+A    P + 
Sbjct: 339 DMYCKCGSIERAFVIFNQIPEKDVTTWTTMITGFAFHGFGNKALELFSVMQAE-TKPNDV 397

Query: 334 TFSVLFGAAGATANIDLGRQIHCVLMKTES-ESDLILENCLISMYAKCGVIDNAYNIFSN 392
           TF  +  A   +  +D G +I   + K  S E  +    CL+ +  + G + +A  +   
Sbjct: 398 TFVSVLAACSHSGLVDEGLKIFSSMKKRYSIEPGVEHYGCLVDLLCRSGRLLDAIGVIEK 457

Query: 393 M 393
           M
Sbjct: 458 M 458



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 69/255 (27%), Positives = 126/255 (49%), Gaps = 15/255 (5%)

Query: 21  YSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMI 80
           Y K   +  A+ +F    +++ VS+N +++G+ + G L  A  LF ++P R++VSW ++I
Sbjct: 209 YVKCNELKLARKVFDGPMEKDTVSWNTIIAGYAKVGELELACDLFNQIPTRDIVSWNSLI 268

Query: 81  CGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRN----GELNEARKVFNSMPIK--- 133
            G A  G     + LF  M   NV      +V LI      G L++ R + + + +K   
Sbjct: 269 SGYAQNGDYVTVKCLFTRMFAENVKPDKVTIVNLISAVAEMGALDQGRWI-HGLAVKMLT 327

Query: 134 --NVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRR 191
                S +A+I  Y +C  +  A V+F ++ E++V TWT+MI+G+   G   +   LF  
Sbjct: 328 KIEAFSGSALIDMYCKCGSIERAFVIFNQIPEKDVTTWTTMITGFAFHGFGNKALELFSV 387

Query: 192 M---PRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRF 248
           M    + N V++ +++   + +G   E L +F  MK          V+    +++   R 
Sbjct: 388 MQAETKPNDVTFVSVLAACSHSGLVDEGLKIFSSMKK--RYSIEPGVEHYGCLVDLLCRS 445

Query: 249 GRLEEAQNLFDTVPV 263
           GRL +A  + + +P+
Sbjct: 446 GRLLDAIGVIEKMPM 460



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 74/282 (26%), Positives = 125/282 (44%), Gaps = 35/282 (12%)

Query: 264 RDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEM 323
           ++E    S+I  Y+  G    A  LF  M DR+ V++  MI G  +    +    LF +M
Sbjct: 96  KEEYLRNSLIKRYVDNGCFECARQLFDEMSDRNVVSYNTMILGFAKVGNILGILELFHDM 155

Query: 324 RAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVI 383
           R+HG+ P + T   L    G      LG+ +H  + K+   S+LIL N L+ MY KC  +
Sbjct: 156 RSHGLEPDDFTMLGLLLLCGQLGETKLGKSVHAQIEKSIGSSNLILYNALLDMYVKCNEL 215

Query: 384 DNAYNIFSNMVSRDLVSWNSMVMGFSHHG-------LANE-------------------- 416
             A  +F   + +D VSWN+++ G++  G       L N+                    
Sbjct: 216 KLARKVFDGPMEKDTVSWNTIIAGYAKVGELELACDLFNQIPTRDIVSWNSLISGYAQNG 275

Query: 417 ---TLK-VFESMLESGTHPNSVTFLGILSACSHAGLVSRG-WELFNAMFDVYKIQPGPEH 471
              T+K +F  M      P+ VT + ++SA +  G + +G W    A+  + KI+     
Sbjct: 276 DYVTVKCLFTRMFAENVKPDKVTIVNLISAVAEMGALDQGRWIHGLAVKMLTKIEAFSGS 335

Query: 472 YVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGF 513
             ++I++  + G I+ A     ++P E D   W  ++    F
Sbjct: 336 --ALIDMYCKCGSIERAFVIFNQIP-EKDVTTWTTMITGFAF 374


>gi|357149883|ref|XP_003575265.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Brachypodium distachyon]
          Length = 877

 Score =  277 bits (708), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 187/634 (29%), Positives = 308/634 (48%), Gaps = 58/634 (9%)

Query: 18  ITKYSKRGFIDEAKALF-QLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEM------PE 70
           +  Y   GF+DEA+ +F +   +RN VS+N ++S +++N R S A ++F EM      P 
Sbjct: 142 VAMYGGFGFVDEARMVFDEAGCERNTVSWNGLMSAYVKNDRCSHAVKVFGEMVWGGVQPN 201

Query: 71  RNVVSWTAMIC-GLAD--AGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVF 127
               S     C G  D  AGR   A  +     +++V + N++V    + G++  A  VF
Sbjct: 202 EFGFSCVVNACTGSRDLEAGRKVHAM-VIRTGYDKDVFTANALVDMYSKLGDIRMAAVVF 260

Query: 128 NSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEER----NVVTWTSMISG-------- 175
             +P  +V+SWNA I+G V       A+ L  +M+      NV T +S++          
Sbjct: 261 GKVPETDVVSWNAFISGCVLHGHDQHALELLLQMKSSGLVPNVFTLSSILKACAGSGAFN 320

Query: 176 ---------------------------YCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFA 208
                                      Y + G +++   +F  +P++++V W A+I G +
Sbjct: 321 LGRQIHGFMVKANADSDNYIAFGLVDMYAKHGLLDDAKKVFDWIPQRDLVLWNALISGCS 380

Query: 209 WNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVP----VR 264
               H E+L LF  M+     G + N  +  +++        + + + +         + 
Sbjct: 381 HGAQHAEALSLFCRMR---KEGFDVNRTTLAAVLKSTASLEAISDTRQVHALAEKLGFLS 437

Query: 265 DEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMR 324
           D      +ID Y     ++ AY +F      D +A+T+MI+ L Q +   +A  LFMEM 
Sbjct: 438 DSHVVNGLIDSYWKCDCLNYAYRVFEKHGSYDIIAFTSMITALSQCDHGEDAIKLFMEML 497

Query: 325 AHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVID 384
             G+ P     S L  A  + +  + G+Q+H  L+K +  SD+   N L+  YAKCG I+
Sbjct: 498 RKGLDPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDVFAGNALVYTYAKCGSIE 557

Query: 385 NAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACS 444
           +A   FS +  + +VSW++M+ G + HG     L VF  M++    PN +T   +L AC+
Sbjct: 558 DADLAFSGLPEKGVVSWSAMIGGLAQHGHGKRALDVFHRMVDEHISPNHITMTSVLCACN 617

Query: 445 HAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIW 504
           HAGLV      FN+M +++ I+   EHY  MI+LLGRAGK+ +A E V  +PF+ +  +W
Sbjct: 618 HAGLVDEAKRYFNSMKEMFGIERTEEHYACMIDLLGRAGKLDDAMELVNSMPFQTNAAVW 677

Query: 505 GALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGL 564
           GALL A      + E+   AA++L  L+P  +  HV+L N YA++G   +  K+R  M  
Sbjct: 678 GALLAA-SRVHRDPELGRLAAEKLFILEPEKSGTHVLLANTYASAGMWDDVAKVRKLMKD 736

Query: 565 KGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
             V+K P  SW+     +  F+ GDK   +  +I
Sbjct: 737 SKVKKEPAMSWVELKDKVHTFIVGDKSHPRARDI 770



 Score =  143 bits (361), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 137/546 (25%), Positives = 237/546 (43%), Gaps = 59/546 (10%)

Query: 92  ARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECC-- 149
           AR++F+E+P+   VSW+S+V     N    +A   F SM   +V     ++   ++C   
Sbjct: 56  ARRVFDEIPDPCHVSWSSLVTAYSNNAMPRDALGAFRSMRSCSVRCNEFVLPVVLKCAPD 115

Query: 150 ----MMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMP-RKNVVSWTAMI 204
                   A+ +   +   ++    ++++ Y   G V+E   +F      +N VSW  ++
Sbjct: 116 AGFGTQLHALAMATGLGG-DIFVANALVAMYGGFGFVDEARMVFDEAGCERNTVSWNGLM 174

Query: 205 GGFAWNGFHKESLLLFIEM--KGICDN--GNNCNVQSCNSMINGYIRFGRLEEAQNLFDT 260
             +  N     ++ +F EM   G+  N  G +C V +C    +  +  GR   A  +  T
Sbjct: 175 SAYVKNDRCSHAVKVFGEMVWGGVQPNEFGFSCVVNACTGSRD--LEAGRKVHAM-VIRT 231

Query: 261 VPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLF 320
              +D  +  +++D Y  +G +  A  +F  +P+ D V+W A ISG V +     A  L 
Sbjct: 232 GYDKDVFTANALVDMYSKLGDIRMAAVVFGKVPETDVVSWNAFISGCVLHGHDQHALELL 291

Query: 321 MEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKC 380
           ++M++ G+ P   T S +  A   +   +LGRQIH  ++K  ++SD  +   L+ MYAK 
Sbjct: 292 LQMKSSGLVPNVFTLSSILKACAGSGAFNLGRQIHGFMVKANADSDNYIAFGLVDMYAKH 351

Query: 381 GVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGIL 440
           G++D+A  +F  +  RDLV WN+++ G SH     E L +F  M + G   N  T   +L
Sbjct: 352 GLLDDAKKVFDWIPQRDLVLWNALISGCSHGAQHAEALSLFCRMRKEGFDVNRTTLAAVL 411

Query: 441 SACS-----------HA---------------GLVSRGW--ELFNAMFDVYKIQPGPE-- 470
            + +           HA               GL+   W  +  N  + V++     +  
Sbjct: 412 KSTASLEAISDTRQVHALAEKLGFLSDSHVVNGLIDSYWKCDCLNYAYRVFEKHGSYDII 471

Query: 471 HYVSMINLLGRAGKIKEAEEF---VLRLPFEPDHRIWGALLGACGFC---EGNAEIAEHA 524
            + SMI  L +    ++A +    +LR   +PD  +  +LL AC      E   ++  H 
Sbjct: 472 AFTSMITALSQCDHGEDAIKLFMEMLRKGLDPDPFVLSSLLNACASLSAYEQGKQVHAHL 531

Query: 525 AKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQM 584
            KR    D     A   L   YA  G  +E+     D+   G+ +    SW    GG+  
Sbjct: 532 IKRQFMSDVFAGNA---LVYTYAKCGS-IED----ADLAFSGLPEKGVVSWSAMIGGLAQ 583

Query: 585 FLSGDK 590
              G +
Sbjct: 584 HGHGKR 589



 Score = 47.0 bits (110), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 31/115 (26%), Positives = 51/115 (44%), Gaps = 2/115 (1%)

Query: 334 TFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNM 393
           T   L     AT ++  G  IH  L+K+   +  +  N L+S Y+KC +  +A  +F  +
Sbjct: 6   TIGPLLTRYAATQSLLQGAHIHAHLLKSGLFA--VFRNHLLSFYSKCRLPGSARRVFDEI 63

Query: 394 VSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGL 448
                VSW+S+V  +S++ +  + L  F SM       N      +L     AG 
Sbjct: 64  PDPCHVSWSSLVTAYSNNAMPRDALGAFRSMRSCSVRCNEFVLPVVLKCAPDAGF 118


>gi|224126883|ref|XP_002319950.1| predicted protein [Populus trichocarpa]
 gi|222858326|gb|EEE95873.1| predicted protein [Populus trichocarpa]
          Length = 746

 Score =  277 bits (708), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 175/540 (32%), Positives = 282/540 (52%), Gaps = 41/540 (7%)

Query: 84  ADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIA 143
           ++ G V  ARKLF++ P+ +V  WN++V    R+G    A +++  M +  V        
Sbjct: 118 SNIGEVSCARKLFDKFPDPDVFLWNAIVRCYSRHGFFGHAIEMYARMQVACVSPDGFSFP 177

Query: 144 GYVECCM------MGEAI--VLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRK 195
             ++ C       MG  +   +F    E +V     +++ Y + GE+     +F R+  +
Sbjct: 178 CVLKACSALPALEMGRRVHGQIFRHGFESDVFVQNGLVALYAKCGEIVRANAVFGRLVDR 237

Query: 196 NVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQ----SCNSMINGYIRFGRL 251
            +VSWT++I G+A NG   E+L +F EM+         NV+    +  S++  Y     L
Sbjct: 238 TIVSWTSIISGYAQNGQPIEALRIFSEMR-------KTNVRPDWIALVSVLRAYTDVEDL 290

Query: 252 EEAQNL------------FDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVA 299
           E  +++            FD +     IS TS+   Y   G V  A   F+ + +   + 
Sbjct: 291 EHGKSIHGCVIKMGLECEFDLL-----ISLTSL---YAKCGHVMVARLFFNQVENPSLIF 342

Query: 300 WTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLM 359
           W AMISG V+N    EA  LF  M++  + P + T +    A     +++L R +   + 
Sbjct: 343 WNAMISGYVKNGYAEEAIELFRLMKSKNIRPDSITVTSSIAACAQIGSLELARWMDEYIS 402

Query: 360 KTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLK 419
            +E  +D+I+   LI  YAKCG +D A  +F  +  +D+V W++M++G+  HG   E++ 
Sbjct: 403 MSEFRNDVIVNTSLIDTYAKCGSVDMARFVFDRIPDKDVVVWSAMMVGYGLHGQGRESII 462

Query: 420 VFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLL 479
           +F +M ++G  PN VTF+G+L+AC ++GLV  GW+LF+ M D Y I+P  +HY  +++LL
Sbjct: 463 LFHAMRQAGVSPNDVTFVGLLTACKNSGLVEEGWDLFHRMRD-YGIEPRHQHYACVVDLL 521

Query: 480 GRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAH 539
           GRAG +  A  FV+ +P EP   +WGALL AC     +  + E+AA+RL  LDP N   +
Sbjct: 522 GRAGHLDRAYNFVMNMPIEPGVSVWGALLSACKI-HRHVTLGEYAAERLFSLDPYNTGHY 580

Query: 540 VVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEIL 599
           V L N+YA+S       K+R+ M  KG+ K  G S +  NG +Q F +GDK   +  EI 
Sbjct: 581 VQLSNLYASSCLWDCVAKVRVLMREKGLTKHLGYSVIEINGKLQAFQAGDKTHPRSKEIF 640



 Score =  125 bits (313), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 110/415 (26%), Positives = 183/415 (44%), Gaps = 30/415 (7%)

Query: 21  YSKRGFIDEAKALFQLMPQRNV----VSYNAMLSGFLQNGRLSEARR----LFEEMPERN 72
           YS+ GF   A  ++  M    V     S+  +L        L   RR    +F    E +
Sbjct: 148 YSRHGFFGHAIEMYARMQVACVSPDGFSFPCVLKACSALPALEMGRRVHGQIFRHGFESD 207

Query: 73  VVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPI 132
           V     ++   A  G +  A  +F  + +R +VSW S++ G  +NG+  EA ++F+ M  
Sbjct: 208 VFVQNGLVALYAKCGEIVRANAVFGRLVDRTIVSWTSIISGYAQNGQPIEALRIFSEMRK 267

Query: 133 KNV-ISWNAMIA---GYVEC-------CMMGEAIVLFEEMEERNVVTWTSMISGYCRAGE 181
            NV   W A+++    Y +         + G  I +  E E   +++ TS+   Y + G 
Sbjct: 268 TNVRPDWIALVSVLRAYTDVEDLEHGKSIHGCVIKMGLECEFDLLISLTSL---YAKCGH 324

Query: 182 VEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSM 241
           V      F ++   +++ W AMI G+  NG+ +E++ LF  MK      ++  V    S 
Sbjct: 325 VMVARLFFNQVENPSLIFWNAMISGYVKNGYAEEAIELFRLMKSKNIRPDSITV---TSS 381

Query: 242 INGYIRFGRLEEAQNLFDTVPV----RDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDA 297
           I    + G LE A+ + + + +     D I  TS+ID Y   G V  A ++F  +PD+D 
Sbjct: 382 IAACAQIGSLELARWMDEYISMSEFRNDVIVNTSLIDTYAKCGSVDMARFVFDRIPDKDV 441

Query: 298 VAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCV 357
           V W+AM+ G   +    E+  LF  MR  GV P + TF  L  A   +  ++ G  +   
Sbjct: 442 VVWSAMMVGYGLHGQGRESIILFHAMRQAGVSPNDVTFVGLLTACKNSGLVEEGWDLFHR 501

Query: 358 LMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVS-WNSMVMGFSHH 411
           +     E       C++ +  + G +D AYN   NM     VS W +++     H
Sbjct: 502 MRDYGIEPRHQHYACVVDLLGRAGHLDRAYNFVMNMPIEPGVSVWGALLSACKIH 556



 Score =  115 bits (288), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 91/343 (26%), Positives = 154/343 (44%), Gaps = 59/343 (17%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNV-VSW 76
           +  Y+K G I  A A+F  +  R +VS+ +++SG+ QNG+  EA R+F EM + NV   W
Sbjct: 215 VALYAKCGEIVRANAVFGRLVDRTIVSWTSIISGYAQNGQPIEALRIFSEMRKTNVRPDW 274

Query: 77  TAMICGL--------------------------------------ADAGRVCEARKLFEE 98
            A++  L                                      A  G V  AR  F +
Sbjct: 275 IALVSVLRAYTDVEDLEHGKSIHGCVIKMGLECEFDLLISLTSLYAKCGHVMVARLFFNQ 334

Query: 99  MPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLF 158
           +   +++ WN+M+ G ++NG   EA ++F  M  KN+   +  +   +  C    ++ L 
Sbjct: 335 VENPSLIFWNAMISGYVKNGYAEEAIELFRLMKSKNIRPDSITVTSSIAACAQIGSLELA 394

Query: 159 EEMEE--------RNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWN 210
             M+E         +V+  TS+I  Y + G V+    +F R+P K+VV W+AM+ G+  +
Sbjct: 395 RWMDEYISMSEFRNDVIVNTSLIDTYAKCGSVDMARFVFDRIPDKDVVVWSAMMVGYGLH 454

Query: 211 GFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRD----- 265
           G  +ES++LF  M+     G + N  +   ++      G +EE  +LF    +RD     
Sbjct: 455 GQGRESIILFHAMR---QAGVSPNDVTFVGLLTACKNSGLVEEGWDLFHR--MRDYGIEP 509

Query: 266 -EISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVA-WTAMISG 306
               +  ++D     G +  AY    NMP    V+ W A++S 
Sbjct: 510 RHQHYACVVDLLGRAGHLDRAYNFVMNMPIEPGVSVWGALLSA 552



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 46/159 (28%), Positives = 81/159 (50%), Gaps = 13/159 (8%)

Query: 15  TSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNV- 73
           TS I  Y+K G +D A+ +F  +P ++VV ++AM+ G+  +G+  E+  LF  M +  V 
Sbjct: 414 TSLIDTYAKCGSVDMARFVFDRIPDKDVVVWSAMMVGYGLHGQGRESIILFHAMRQAGVS 473

Query: 74  ---VSWTAMICGLADAGRVCEARKLFEEMPERNVVSWN---SMVVGLI-RNGELNEARKV 126
              V++  ++    ++G V E   LF  M +  +   +   + VV L+ R G L+ A   
Sbjct: 474 PNDVTFVGLLTACKNSGLVEEGWDLFHRMRDYGIEPRHQHYACVVDLLGRAGHLDRAYNF 533

Query: 127 FNSMPIKNVIS-WNAMIAGYVECCMMGEAIVLFEEMEER 164
             +MPI+  +S W A+++     C +   + L E   ER
Sbjct: 534 VMNMPIEPGVSVWGALLSA----CKIHRHVTLGEYAAER 568



 Score = 43.9 bits (102), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 35/149 (23%), Positives = 64/149 (42%), Gaps = 13/149 (8%)

Query: 353 QIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHG 412
           QI+  L+ T  +    L   L++  +  G +  A  +F      D+  WN++V  +S HG
Sbjct: 93  QIYAKLLVTGLQYGGFLIAKLVNKASNIGEVSCARKLFDKFPDPDVFLWNAIVRCYSRHG 152

Query: 413 LANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMF------DVYKIQ 466
                ++++  M  +   P+  +F  +L ACS    +  G  +   +F      DV+ +Q
Sbjct: 153 FFGHAIEMYARMQVACVSPDGFSFPCVLKACSALPALEMGRRVHGQIFRHGFESDVF-VQ 211

Query: 467 PGPEHYVSMINLLGRAGKIKEAEEFVLRL 495
            G      ++ L  + G+I  A     RL
Sbjct: 212 NG------LVALYAKCGEIVRANAVFGRL 234


>gi|297740028|emb|CBI30210.3| unnamed protein product [Vitis vinifera]
          Length = 900

 Score =  277 bits (708), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 199/684 (29%), Positives = 324/684 (47%), Gaps = 110/684 (16%)

Query: 12  VHLTSS-ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMP- 69
           +HL ++ I  Y K G +  A  +F  +   NVVSY AM+SGF ++ R  +A  +F  M  
Sbjct: 123 IHLANALIVAYLKLGMVPNAYKVFVGLSCPNVVSYTAMISGFAKSNRERQAMEIFFRMRS 182

Query: 70  ---ERNVVSWTAMI------------CGL-----------------------ADAGRVCE 91
              E N  S+ A++            C L                          G +  
Sbjct: 183 SGIELNEFSFVAILTVCIRLLDLELGCQLHAIVIKMGFLNYTFVSNALMGLYGKCGYLDS 242

Query: 92  ARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMP-------------------- 131
             +LF+EMP R++ SWN+++  +++      A ++F  M                     
Sbjct: 243 VLQLFDEMPHRDIASWNTVISSVVKEMMYERAFELFRDMRRIDGFRIDHFTLSTILVAAR 302

Query: 132 --------------IK-----NVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSM 172
                         IK     N+   NA+I  Y +C  +   + LFE+M  R+V+TWT M
Sbjct: 303 GLASMVGREIHAHVIKIGFESNISVINALIRFYTKCGSIKHVVALFEKMRVRDVITWTEM 362

Query: 173 ISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLF-------IEMKG 225
           I+ Y   G  +    +F +MP +N +S+ A++ GF  NG   ++L  F       +E+  
Sbjct: 363 ITAYMEFGLTDLALEVFDKMPARNSISYNAILSGFCQNGEGSKALAFFCRMVEEGVELTD 422

Query: 226 ICDNG--NNCNV---QSCNSMINGYI-RFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSV 279
               G  N C +      +  I+G+I +FG    A                +++D     
Sbjct: 423 FTLTGVLNACGLLMEAKISKQIHGFILKFGFGSNA------------CIEAALLDMCTRC 470

Query: 280 GQVSNAYYLFHNMPDRDA--VAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSV 337
           G++++A  +F       +  + WT+MI G  +N    EA  LF + +  G   ++   S 
Sbjct: 471 GRMADAQKMFSQGSFSQSGSIIWTSMICGYARNAQPEEAISLFCQSQLEGAMVVDKVAST 530

Query: 338 -LFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSR 396
            + G  G  A  ++G+QIHC  +K+   SDL + N +I+MY+KC  +D+A  +F+ M + 
Sbjct: 531 AVLGVCGTLAFHEMGKQIHCHALKSGFLSDLGVGNSIITMYSKCSNMDDAIKVFNVMPAH 590

Query: 397 DLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSH--AGLVSRGWE 454
           D+VSWN ++ G   H   +E L V+  M ++G  P++VTF+ I+SA  H  + LV     
Sbjct: 591 DIVSWNGLIAGHLLHRQGDEALSVWSKMEKAGIKPDTVTFVLIISAYRHTNSNLVDNCRR 650

Query: 455 LFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFC 514
           LF +M  +Y I P  EHY S++ +LG  G ++EAEE + ++P EP+  +W ALL AC   
Sbjct: 651 LFLSMKTIYHIDPTVEHYTSLVGVLGYWGLLEEAEEMINKMPIEPEASVWRALLDACRI- 709

Query: 515 EGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCS 574
             N  I + AAK LL + PL+   ++++ N+Y+A GR      +R +M +KG RK PG S
Sbjct: 710 HSNTTIGKRAAKHLLAMKPLDPSTYILVSNLYSAYGRWHCSDMVREEMRVKGFRKHPGRS 769

Query: 575 WLMRNGGIQMFLSGDKIPAQVAEI 598
           W++    +  F + DK   Q  +I
Sbjct: 770 WIIHENKVHSFYARDKSHPQAKDI 793



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 55/249 (22%), Positives = 103/249 (41%), Gaps = 38/249 (15%)

Query: 234 NVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMP 293
           ++   N++I  Y++ G +  A  +F  +   + +S+T+M                     
Sbjct: 122 DIHLANALIVAYLKLGMVPNAYKVFVGLSCPNVVSYTAM--------------------- 160

Query: 294 DRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQ 353
                     ISG  ++    +A  +F  MR+ G+     +F  +        +++LG Q
Sbjct: 161 ----------ISGFAKSNRERQAMEIFFRMRSSGIELNEFSFVAILTVCIRLLDLELGCQ 210

Query: 354 IHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGL 413
           +H +++K    +   + N L+ +Y KCG +D+   +F  M  RD+ SWN+++       +
Sbjct: 211 LHAIVIKMGFLNYTFVSNALMGLYGKCGYLDSVLQLFDEMPHRDIASWNTVISSVVKEMM 270

Query: 414 ANETLKVFESMLE-SGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHY 472
                ++F  M    G   +  T   IL A    GL S    +       + I+ G E  
Sbjct: 271 YERAFELFRDMRRIDGFRIDHFTLSTILVAAR--GLAS----MVGREIHAHVIKIGFESN 324

Query: 473 VSMINLLGR 481
           +S+IN L R
Sbjct: 325 ISVINALIR 333



 Score = 59.7 bits (143), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 45/157 (28%), Positives = 78/157 (49%), Gaps = 9/157 (5%)

Query: 347 NIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVM 406
           +++L + +H  + K     D+ L N LI  Y K G++ NAY +F  +   ++VS+ +M+ 
Sbjct: 105 DVELIKAVHASIFKLAE--DIHLANALIVAYLKLGMVPNAYKVFVGLSCPNVVSYTAMIS 162

Query: 407 GFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQ 466
           GF+      + +++F  M  SG   N  +F+ IL+ C     +  G +L   +     I+
Sbjct: 163 GFAKSNRERQAMEIFFRMRSSGIELNEFSFVAILTVCIRLLDLELGCQLHAIV-----IK 217

Query: 467 PGPEHYVSMIN-LLGRAGKIKEAEEFVLRLPFEPDHR 502
            G  +Y  + N L+G  GK    +  VL+L  E  HR
Sbjct: 218 MGFLNYTFVSNALMGLYGKCGYLDS-VLQLFDEMPHR 253


>gi|330689867|gb|AEC33263.1| putative pentatricopeptide protein [Triticum aestivum]
          Length = 644

 Score =  277 bits (708), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 161/500 (32%), Positives = 256/500 (51%), Gaps = 17/500 (3%)

Query: 110 MVVGLIRNGELNEARKVFNSMPIKN-VISWNAMIAGYVECCMMGEAIVLFEEMEER---- 164
           ++    R+G  +EA  VF++MP K   +SWN +I+ Y  CC    A+  F  M       
Sbjct: 113 LLAAYARHGRADEAHHVFDAMPSKRATMSWNTLISAYSVCCDPNNAMATFARMAAAGEAL 172

Query: 165 -NVVTWTSMISGYCRAGEVEEGYCLFRRMPRK----NVVSWTAMIGGFAWNGFHKESLLL 219
            + VTWT+++S + R G+      LF  M R     N  S    +    + G    +   
Sbjct: 173 PDAVTWTTLLSAHARCGKHPVVLELFGDMHRSGCEGNAESVAVALSACPYAGDLALAKGR 232

Query: 220 FIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSV 279
            I   G+        +   NS++  Y + G++++A+ +F     R+ ++W ++I  Y + 
Sbjct: 233 AIHGYGVAKGVVRGYLFVTNSLVCMYGKLGKMDDAREVFREAGERNTVTWNALITSYAAA 292

Query: 280 GQVSNAYYLFHNMPDR------DAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNA 333
           G    A  +   M  R      + ++W+A+I G   +     A  LF  M+   + P   
Sbjct: 293 GMCDEALNVLVRMEQRGGMVAPNVMSWSAVIGGFASSGDNERALELFRRMQQQWLSPNVV 352

Query: 334 TFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNM 393
           T + +  A      + LGR++H   +++  +   ++ N LI+MYAKCG + +A  +F  M
Sbjct: 353 TLATVLSACTEQLAVRLGREVHADAIRSMVDRHSLVANGLINMYAKCGRVADARTVFDGM 412

Query: 394 VSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGW 453
            SRDLVSWNSM+ G+  HGL ++ L VF  M E+   P+ VTF+ +LSACSHAG VS G 
Sbjct: 413 KSRDLVSWNSMLAGYGMHGLCDDALAVFTDMAEAKVDPDGVTFVAVLSACSHAGRVSEGR 472

Query: 454 ELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGF 513
            LF+ M   +KI P  EHY  M++LLGRAG +KEA EF+  +P   D  +WGALL +C  
Sbjct: 473 RLFDQMILEHKISPSMEHYTCMVDLLGRAGLLKEASEFIETMPMGADLCVWGALLNSCRI 532

Query: 514 CEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGC 573
             G+A +AE    + L+   +    H ++ N+YAA G   +  ++R+     G+RK PG 
Sbjct: 533 -HGDAAMAEATIAKALQAGVVTTGNHTLITNLYAACGMWDDSKRVRVMTREAGLRKNPGQ 591

Query: 574 SWLMRNGGIQMFLSGDKIPA 593
           SW+     +  F++G   P+
Sbjct: 592 SWVEVKNKVFAFMAGSVPPS 611



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 112/456 (24%), Positives = 202/456 (44%), Gaps = 32/456 (7%)

Query: 18  ITKYSKRGFIDEAKALFQLMP-QRNVVSYNAMLSGFLQNGRLSEARRLFEEMPER----- 71
           +  Y++ G  DEA  +F  MP +R  +S+N ++S +      + A   F  M        
Sbjct: 114 LAAYARHGRADEAHHVFDAMPSKRATMSWNTLISAYSVCCDPNNAMATFARMAAAGEALP 173

Query: 72  NVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNG-------ELNEAR 124
           + V+WT ++   A  G+     +LF +M  R+    N+  V +  +         L + R
Sbjct: 174 DAVTWTTLLSAHARCGKHPVVLELFGDM-HRSGCEGNAESVAVALSACPYAGDLALAKGR 232

Query: 125 KVFNSMPIKNVIS-----WNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRA 179
            +      K V+       N+++  Y +   M +A  +F E  ERN VTW ++I+ Y  A
Sbjct: 233 AIHGYGVAKGVVRGYLFVTNSLVCMYGKLGKMDDAREVFREAGERNTVTWNALITSYAAA 292

Query: 180 GEVEEGYCLFRRMPRK------NVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNC 233
           G  +E   +  RM ++      NV+SW+A+IGGFA +G ++ +L LF  M+    + N  
Sbjct: 293 GMCDEALNVLVRMEQRGGMVAPNVMSWSAVIGGFASSGDNERALELFRRMQQQWLSPNVV 352

Query: 234 NVQSCNSMINGY--IRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHN 291
            + +  S       +R GR   A  +   V  R  +    +I+ Y   G+V++A  +F  
Sbjct: 353 TLATVLSACTEQLAVRLGREVHADAIRSMVD-RHSLVANGLINMYAKCGRVADARTVFDG 411

Query: 292 MPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLG 351
           M  RD V+W +M++G   + L  +A  +F +M    V P   TF  +  A      +  G
Sbjct: 412 MKSRDLVSWNSMLAGYGMHGLCDDALAVFTDMAEAKVDPDGVTFVAVLSACSHAGRVSEG 471

Query: 352 RQI-HCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNM-VSRDLVSWNSMVMGFS 409
           R++   ++++ +    +    C++ +  + G++  A      M +  DL  W +++    
Sbjct: 472 RRLFDQMILEHKISPSMEHYTCMVDLLGRAGLLKEASEFIETMPMGADLCVWGALLNSCR 531

Query: 410 HHGLANETLKVFESMLESG--THPNSVTFLGILSAC 443
            HG A          L++G  T  N      + +AC
Sbjct: 532 IHGDAAMAEATIAKALQAGVVTTGNHTLITNLYAAC 567



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 73/278 (26%), Positives = 141/278 (50%), Gaps = 21/278 (7%)

Query: 16  SSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPER---- 71
           S +  Y K G +D+A+ +F+   +RN V++NA+++ +   G   EA  +   M +R    
Sbjct: 253 SLVCMYGKLGKMDDAREVFREAGERNTVTWNALITSYAAAGMCDEALNVLVRMEQRGGMV 312

Query: 72  --NVVSWTAMICGLADAGRVCEARKLFEEMPER----NVVSWNSMVVGLIRNGELNEARK 125
             NV+SW+A+I G A +G    A +LF  M ++    NVV+  +++        +   R+
Sbjct: 313 APNVMSWSAVIGGFASSGDNERALELFRRMQQQWLSPNVVTLATVLSACTEQLAVRLGRE 372

Query: 126 V----FNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGE 181
           V      SM  ++ +  N +I  Y +C  + +A  +F+ M+ R++V+W SM++GY   G 
Sbjct: 373 VHADAIRSMVDRHSLVANGLINMYAKCGRVADARTVFDGMKSRDLVSWNSMLAGYGMHGL 432

Query: 182 VEEGYCLFRRMPRKNV----VSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQS 237
            ++   +F  M    V    V++ A++   +  G   E   LF +M  I ++  + +++ 
Sbjct: 433 CDDALAVFTDMAEAKVDPDGVTFVAVLSACSHAGRVSEGRRLFDQM--ILEHKISPSMEH 490

Query: 238 CNSMINGYIRFGRLEEAQNLFDTVPV-RDEISWTSMID 274
              M++   R G L+EA    +T+P+  D   W ++++
Sbjct: 491 YTCMVDLLGRAGLLKEASEFIETMPMGADLCVWGALLN 528


>gi|15235472|ref|NP_195434.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75097747|sp|O23169.1|PP353_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g37170
 gi|2464864|emb|CAB16758.1| putative protein [Arabidopsis thaliana]
 gi|7270666|emb|CAB80383.1| putative protein [Arabidopsis thaliana]
 gi|332661361|gb|AEE86761.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 691

 Score =  277 bits (708), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 148/477 (31%), Positives = 260/477 (54%), Gaps = 9/477 (1%)

Query: 120 LNEARKVFNSMP----IKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISG 175
           L E +KV   +     +  ++ WN ++  Y +C  + +A  +F+EM  R++ +W  M++G
Sbjct: 101 LEEGKKVHEHIRTSGFVPGIVIWNRLLRMYAKCGSLVDARKVFDEMPNRDLCSWNVMVNG 160

Query: 176 YCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNN--- 232
           Y   G +EE   LF  M  K+  SWTAM+ G+      +E+L+L+  M+ + ++  N   
Sbjct: 161 YAEVGLLEEARKLFDEMTEKDSYSWTAMVTGYVKKDQPEEALVLYSLMQRVPNSRPNIFT 220

Query: 233 CNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNM 292
            ++    +     IR G+ E   ++       DE+ W+S++D Y   G +  A  +F  +
Sbjct: 221 VSIAVAAAAAVKCIRRGK-EIHGHIVRAGLDSDEVLWSSLMDMYGKCGCIDEARNIFDKI 279

Query: 293 PDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGR 352
            ++D V+WT+MI    ++  + E   LF E+      P   TF+ +  A       +LG+
Sbjct: 280 VEKDVVSWTSMIDRYFKSSRWREGFSLFSELVGSCERPNEYTFAGVLNACADLTTEELGK 339

Query: 353 QIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHG 412
           Q+H  + +   +      + L+ MY KCG I++A ++       DLVSW S++ G + +G
Sbjct: 340 QVHGYMTRVGFDPYSFASSSLVDMYTKCGNIESAKHVVDGCPKPDLVSWTSLIGGCAQNG 399

Query: 413 LANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHY 472
             +E LK F+ +L+SGT P+ VTF+ +LSAC+HAGLV +G E F ++ + +++    +HY
Sbjct: 400 QPDEALKYFDLLLKSGTKPDHVTFVNVLSACTHAGLVEKGLEFFYSITEKHRLSHTSDHY 459

Query: 473 VSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELD 532
             +++LL R+G+ ++ +  +  +P +P   +W ++LG C    GN ++AE AA+ L +++
Sbjct: 460 TCLVDLLARSGRFEQLKSVISEMPMKPSKFLWASVLGGCS-TYGNIDLAEEAAQELFKIE 518

Query: 533 PLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGD 589
           P N   +V + NIYAA+G+  EE K+R  M   GV K PG SW        +F++ D
Sbjct: 519 PENPVTYVTMANIYAAAGKWEEEGKMRKRMQEIGVTKRPGSSWTEIKRKRHVFIAAD 575



 Score =  155 bits (392), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 122/478 (25%), Positives = 211/478 (44%), Gaps = 73/478 (15%)

Query: 42  VVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPE 101
           +V +N +L  + + G L +AR++F+EMP R++ SW  M+ G A+ G + EARKLF+EM E
Sbjct: 120 IVIWNRLLRMYAKCGSLVDARKVFDEMPNRDLCSWNVMVNGYAEVGLLEEARKLFDEMTE 179

Query: 102 RNVVSWNSMVVGLIRNGELNEA-------RKVFNSMPIKNVISWNAMIAGYVECCMMGEA 154
           ++  SW +MV G ++  +  EA       ++V NS P    +S     A  V+C   G+ 
Sbjct: 180 KDSYSWTAMVTGYVKKDQPEEALVLYSLMQRVPNSRPNIFTVSIAVAAAAAVKCIRRGKE 239

Query: 155 I--VLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGF 212
           I   +     + + V W+S++  Y + G ++E   +F ++  K+VVSWT+MI  +  +  
Sbjct: 240 IHGHIVRAGLDSDEVLWSSLMDMYGKCGCIDEARNIFDKIVEKDVVSWTSMIDRYFKSSR 299

Query: 213 HKESLLLFIEMKGICDNGN------------NCNVQSCNSMINGYI-RFGRLEEAQNLFD 259
            +E   LF E+ G C+  N            +   +     ++GY+ R G        FD
Sbjct: 300 WREGFSLFSELVGSCERPNEYTFAGVLNACADLTTEELGKQVHGYMTRVG--------FD 351

Query: 260 TVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYL 319
                   + +S++D Y   G + +A ++    P  D V+WT++I G  QN    EA   
Sbjct: 352 PY----SFASSSLVDMYTKCGNIESAKHVVDGCPKPDLVSWTSLIGGCAQNGQPDEALKY 407

Query: 320 FMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQ-IHCVLMKTESESDLILENCLISMYA 378
           F  +   G  P + TF  +  A      ++ G +  + +  K           CL+ + A
Sbjct: 408 FDLLLKSGTKPDHVTFVNVLSACTHAGLVEKGLEFFYSITEKHRLSHTSDHYTCLVDLLA 467

Query: 379 KCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLG 438
           + G  +   ++ S M  +                                  P+   +  
Sbjct: 468 RSGRFEQLKSVISEMPMK----------------------------------PSKFLWAS 493

Query: 439 ILSACSHAGLVSRGWELFNAMFDVYKIQP-GPEHYVSMINLLGRAGKIKEAEEFVLRL 495
           +L  CS  G +    E   A  +++KI+P  P  YV+M N+   AGK +E  +   R+
Sbjct: 494 VLGGCSTYGNIDLAEE---AAQELFKIEPENPVTYVTMANIYAAAGKWEEEGKMRKRM 548



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 60/233 (25%), Positives = 104/233 (44%), Gaps = 14/233 (6%)

Query: 304 ISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTES 363
           I  L   +L  EA  L    +     P  +T+  L      T  ++ G+++H  +  +  
Sbjct: 61  IDVLCGQKLLREAVQLLGRAKK----PPASTYCNLIQVCSQTRALEEGKKVHEHIRTSGF 116

Query: 364 ESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFES 423
              +++ N L+ MYAKCG + +A  +F  M +RDL SWN MV G++  GL  E  K+F+ 
Sbjct: 117 VPGIVIWNRLLRMYAKCGSLVDARKVFDEMPNRDLCSWNVMVNGYAEVGLLEEARKLFDE 176

Query: 424 MLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAG 483
           M    T  +S ++  +++             L++ M  V   +P     VS+      A 
Sbjct: 177 M----TEKDSYSWTAMVTGYVKKDQPEEALVLYSLMQRVPNSRPNI-FTVSIAVAAAAAV 231

Query: 484 KI----KEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELD 532
           K     KE    ++R   + D  +W +L+   G C G  + A +   +++E D
Sbjct: 232 KCIRRGKEIHGHIVRAGLDSDEVLWSSLMDMYGKC-GCIDEARNIFDKIVEKD 283



 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 66/296 (22%), Positives = 130/296 (43%), Gaps = 44/296 (14%)

Query: 15  TSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMP---ER 71
           +S +  Y K G IDEA+ +F  + +++VVS+ +M+  + ++ R  E   LF E+    ER
Sbjct: 257 SSLMDMYGKCGCIDEARNIFDKIVEKDVVSWTSMIDRYFKSSRWREGFSLFSELVGSCER 316

Query: 72  -NVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSW----NSMVVGLIRNGELNEARKV 126
            N  ++  ++   AD       +++   M       +    +S+V    + G +  A+ V
Sbjct: 317 PNEYTFAGVLNACADLTTEELGKQVHGYMTRVGFDPYSFASSSLVDMYTKCGNIESAKHV 376

Query: 127 FNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEM----EERNVVTWTSMISGYCRAGEV 182
            +  P  +++SW ++I G  +     EA+  F+ +     + + VT+ +++S    AG V
Sbjct: 377 VDGCPKPDLVSWTSLIGGCAQNGQPDEALKYFDLLLKSGTKPDHVTFVNVLSACTHAGLV 436

Query: 183 EEGYCLFRRMPRKNVVS-----WTAMIGGFAWNGFH------------KESLLLFIEMKG 225
           E+G   F  +  K+ +S     +T ++   A +G              K S  L+  + G
Sbjct: 437 EKGLEFFYSITEKHRLSHTSDHYTCLVDLLARSGRFEQLKSVISEMPMKPSKFLWASVLG 496

Query: 226 ICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQ 281
            C    N ++                E AQ LF   P  + +++ +M + Y + G+
Sbjct: 497 GCSTYGNIDLAE--------------EAAQELFKIEP-ENPVTYVTMANIYAAAGK 537


>gi|218184996|gb|EEC67423.1| hypothetical protein OsI_34621 [Oryza sativa Indica Group]
          Length = 799

 Score =  277 bits (708), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 194/682 (28%), Positives = 309/682 (45%), Gaps = 96/682 (14%)

Query: 7   PKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFE 66
           P+   V   + +T YS  G I  A ALF  MP  +VVS+NA++SG+ Q G   E+  LF 
Sbjct: 79  PRRDTVSWNTMLTAYSHAGDISTAVALFDGMPDPDVVSWNALVSGYCQRGMFQESVDLFV 138

Query: 67  EM------PERNVVSWTAMIC-----------------------------GLADAGRVC- 90
           EM      P+R   +     C                              L D    C 
Sbjct: 139 EMARRGVSPDRTTFAVLLKSCSALEELSLGVQVHALAVKTGLEIDVRTGSALVDMYGKCR 198

Query: 91  ---EARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNV-ISWNAMIAGYV 146
              +A   F  MPERN VSW S + G ++N +     ++F  M    + +S  +  + + 
Sbjct: 199 SLDDALCFFYGMPERNWVSWGSAIAGCVQNEQYVRGLELFIEMQRLGLGVSQPSYASAFR 258

Query: 147 ECCMMG--------EAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVV 198
            C  M          A  +  +     VV  T+++  Y +A  + +    F  +P   V 
Sbjct: 259 SCAAMSCLNTGRQLHAHAIKNKFSSDRVVG-TAIVDVYAKANSLTDARRAFFGLPNHTVE 317

Query: 199 SWTAMIGGFAWNGFHKESLLLF--IEMKGI---CDN------GNNCNVQSCNSMINGYIR 247
           +  AM+ G     F   S + F  + + G+   C        G   +  +  S+++ Y +
Sbjct: 318 TSNAMMVGL----FMIRSSIRFDVVSLSGVFSACAETKGYFPGQQVHCLAIKSVLDLYGK 373

Query: 248 FGRLEEAQNLFDTVPVRDEISW-------------------------------TSMIDGY 276
              L EA  +F  +  +D +SW                               ++++D Y
Sbjct: 374 CKALMEAYLIFQGMKQKDSVSWNAIIAALEQNGHYDDTILHFNEMLRFDAFVASTVVDMY 433

Query: 277 LSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFS 336
              G +  A  L   +  +  V+W A++SG   N+    A   F EM   G+ P + TF+
Sbjct: 434 CKCGIIDEAQKLHDRIGGQQVVSWNAILSGFSLNKESEAAQKFFSEMLDMGLKPDHFTFA 493

Query: 337 VLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSR 396
            +       A I+LG+QIH  ++K E   D  + + L+ MYAKCG + ++  +F  +  R
Sbjct: 494 TVLDTCANLATIELGKQIHGQIIKQEMLDDEYISSTLVDMYAKCGDMPDSLLVFEKVEKR 553

Query: 397 DLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELF 456
           D VSWN+M+ G++ HGL  E L++FE M +    PN  TF+ +L ACSH GL   G   F
Sbjct: 554 DFVSWNAMICGYALHGLGVEALRMFERMQKENVVPNHATFVAVLRACSHVGLFDDGCRYF 613

Query: 457 NAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEG 516
           + M   YK++P  EH+  M+++LGR+   +EA +F+  +PF+ D  IW  LL  C     
Sbjct: 614 HLMTTHYKLEPQLEHFACMVDILGRSKGPQEAVKFINSMPFQADAVIWKTLLSICKI-RQ 672

Query: 517 NAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWL 576
           + EIAE AA  +L LDP ++  +++L N+YA SG+  +  + R  +    ++K PGCSW+
Sbjct: 673 DVEIAELAASNVLLLDPDDSSVYILLSNVYAESGKWADVSRTRRLLKQGRLKKEPGCSWI 732

Query: 577 MRNGGIQMFLSGDKIPAQVAEI 598
                +  FL GDK   +  E+
Sbjct: 733 EAQSEMHGFLVGDKAHPRSGEL 754



 Score =  148 bits (374), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 126/533 (23%), Positives = 227/533 (42%), Gaps = 88/533 (16%)

Query: 46  NAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVV 105
           N +L  + +    + ARR+F+ MP R+ VSW  M+   + AG +  A  LF+ MP+ +VV
Sbjct: 56  NCLLQMYARCAGAACARRVFDAMPRRDTVSWNTMLTAYSHAGDISTAVALFDGMPDPDVV 115

Query: 106 SWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEME--- 162
           SWN++V G  + G   E+  +F  M  + V       A  ++ C   E + L  ++    
Sbjct: 116 SWNALVSGYCQRGMFQESVDLFVEMARRGVSPDRTTFAVLLKSCSALEELSLGVQVHALA 175

Query: 163 -----ERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESL 217
                E +V T ++++  Y +   +++  C F  MP +N VSW + I G   N  +   L
Sbjct: 176 VKTGLEIDVRTGSALVDMYGKCRSLDDALCFFYGMPERNWVSWGSAIAGCVQNEQYVRGL 235

Query: 218 LLFIEMK----GICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMI 273
            LFIEM+    G+         +SC +M    +  GR   A  + +     D +  T+++
Sbjct: 236 ELFIEMQRLGLGVSQPSYASAFRSCAAM--SCLNTGRQLHAHAIKNKFS-SDRVVGTAIV 292

Query: 274 DGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNA 333
           D Y     +++A   F  +P+       AM+ GL      + ++  F  +   GV     
Sbjct: 293 DVYAKANSLTDARRAFFGLPNHTVETSNAMMVGL----FMIRSSIRFDVVSLSGV----- 343

Query: 334 TFSVLFGAAGATANIDLGRQIHCVLMKT----------------------ESES------ 365
                F A   T     G+Q+HC+ +K+                      + +S      
Sbjct: 344 -----FSACAETKGYFPGQQVHCLAIKSVLDLYGKCKALMEAYLIFQGMKQKDSVSWNAI 398

Query: 366 -----------DLILE------------NCLISMYAKCGVIDNAYNIFSNMVSRDLVSWN 402
                      D IL             + ++ MY KCG+ID A  +   +  + +VSWN
Sbjct: 399 IAALEQNGHYDDTILHFNEMLRFDAFVASTVVDMYCKCGIIDEAQKLHDRIGGQQVVSWN 458

Query: 403 SMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDV 462
           +++ GFS +  +    K F  ML+ G  P+  TF  +L  C++   +  G ++      +
Sbjct: 459 AILSGFSLNKESEAAQKFFSEMLDMGLKPDHFTFATVLDTCANLATIELGKQIHG---QI 515

Query: 463 YKIQPGPEHYVS--MINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGF 513
            K +   + Y+S  ++++  + G + ++   V     + D   W A++  CG+
Sbjct: 516 IKQEMLDDEYISSTLVDMYAKCGDMPDS-LLVFEKVEKRDFVSWNAMI--CGY 565


>gi|356510389|ref|XP_003523921.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 818

 Score =  277 bits (708), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 192/631 (30%), Positives = 303/631 (48%), Gaps = 68/631 (10%)

Query: 15  TSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMP----- 69
           T  I+ + K G   EA  +F+ +  +  V Y+ ML G+ +N  L +A   F  M      
Sbjct: 83  TKVISLFCKFGSNSEAARVFEHVELKLDVLYHIMLKGYAKNSSLGDALCFFLRMMCDEVR 142

Query: 70  ----------------------------------ERNVVSWTAMICGLADAGRVCEARKL 95
                                             E N+   TA++   A   ++  A K+
Sbjct: 143 LVVGDYACLLQLCGENLDLKKGREIHGLIITNGFESNLFVMTAVMSLYAKCRQIDNAYKM 202

Query: 96  FEEMPERNVVSWNSMVVGLIRNG----------ELNEARKVFNSMPIKNVISWNA-MIAG 144
           FE M  +++VSW ++V G  +NG          ++ EA +  +S+ + +++   A M A 
Sbjct: 203 FERMQHKDLVSWTTLVAGYAQNGHAKRALQLVLQMQEAGQKPDSVTLVSILPAVADMKAL 262

Query: 145 YVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMI 204
            +   + G A   F    E  V    +++  Y + G       +F+ M  K VVSW  MI
Sbjct: 263 RIGRSIHGYA---FRSGFESLVNVTNALLDMYFKCGSARIARLVFKGMRSKTVVSWNTMI 319

Query: 205 GGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEA---QNLFDTV 261
            G A NG  +E+   F++M    D G      +   ++      G LE       L D +
Sbjct: 320 DGCAQNGESEEAFATFLKM---LDEGEVPTRVTMMGVLLACANLGDLERGWFVHKLLDKL 376

Query: 262 PVRDEIS-WTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLF 320
            +   +S   S+I  Y    +V  A  +F+N+ ++  V W AMI G  QN    EA  LF
Sbjct: 377 KLDSNVSVMNSLISMYSKCKRVDIAASIFNNL-EKTNVTWNAMILGYAQNGCVKEALNLF 435

Query: 321 MEMRAHGVPPLNATFSVLFGAAGATANIDLGRQ---IHCVLMKTESESDLILENCLISMY 377
             M++ G+     T   L G   A A+  + RQ   IH + ++   ++++ +   L+ MY
Sbjct: 436 CMMQSQGIKLDCFT---LVGVITALADFSVNRQAKWIHGLAVRACMDNNVFVSTALVDMY 492

Query: 378 AKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFL 437
           AKCG I  A  +F  M  R +++WN+M+ G+  HG+  ETL +F  M +    PN +TFL
Sbjct: 493 AKCGAIKTARKLFDMMQERHVITWNAMIDGYGTHGVGKETLDLFNEMQKGAVKPNDITFL 552

Query: 438 GILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPF 497
            ++SACSH+G V  G  LF +M + Y ++P  +HY +M++LLGRAG++ +A  F+  +P 
Sbjct: 553 SVISACSHSGFVEEGLLLFKSMQEDYYLEPTMDHYSAMVDLLGRAGQLDDAWNFIQEMPI 612

Query: 498 EPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHK 557
           +P   + GA+LGAC     N E+ E AA++L +LDP     HV+L NIYA++    +  K
Sbjct: 613 KPGISVLGAMLGACKI-HKNVELGEKAAQKLFKLDPDEGGYHVLLANIYASNSMWDKVAK 671

Query: 558 LRMDMGLKGVRKVPGCSWLMRNGGIQMFLSG 588
           +R  M  KG+ K PGCSW+     I  F SG
Sbjct: 672 VRTAMEDKGLHKTPGCSWVELRNEIHTFYSG 702



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 105/427 (24%), Positives = 191/427 (44%), Gaps = 46/427 (10%)

Query: 31  KALFQLMP-------QRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGL 83
           K L+Q++P           +    ++S F + G  SEA R+FE +  +  V +  M+ G 
Sbjct: 61  KELYQILPFIIKNGFYNEHLFQTKVISLFCKFGSNSEAARVFEHVELKLDVLYHIMLKGY 120

Query: 84  ADAGRVCEARKLFEEM---PERNVVSWNSMVVGLI-RNGELNEARKVFNSMPI----KNV 135
           A    + +A   F  M     R VV   + ++ L   N +L + R++   +       N+
Sbjct: 121 AKNSSLGDALCFFLRMMCDEVRLVVGDYACLLQLCGENLDLKKGREIHGLIITNGFESNL 180

Query: 136 ISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRK 195
               A+++ Y +C  +  A  +FE M+ +++V+WT++++GY + G  +    L  +M   
Sbjct: 181 FVMTAVMSLYAKCRQIDNAYKMFERMQHKDLVSWTTLVAGYAQNGHAKRALQLVLQMQEA 240

Query: 196 NVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQ 255
                          G   +S+ L   +  + D             I+GY      E   
Sbjct: 241 ---------------GQKPDSVTLVSILPAVAD----MKALRIGRSIHGYAFRSGFESLV 281

Query: 256 NLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVE 315
           N+ +           +++D Y   G    A  +F  M  +  V+W  MI G  QN    E
Sbjct: 282 NVTN-----------ALLDMYFKCGSARIARLVFKGMRSKTVVSWNTMIDGCAQNGESEE 330

Query: 316 ATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLIS 375
           A   F++M   G  P   T   +  A     +++ G  +H +L K + +S++ + N LIS
Sbjct: 331 AFATFLKMLDEGEVPTRVTMMGVLLACANLGDLERGWFVHKLLDKLKLDSNVSVMNSLIS 390

Query: 376 MYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVT 435
           MY+KC  +D A +IF+N+   + V+WN+M++G++ +G   E L +F  M   G   +  T
Sbjct: 391 MYSKCKRVDIAASIFNNLEKTN-VTWNAMILGYAQNGCVKEALNLFCMMQSQGIKLDCFT 449

Query: 436 FLGILSA 442
            +G+++A
Sbjct: 450 LVGVITA 456



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 108/438 (24%), Positives = 190/438 (43%), Gaps = 68/438 (15%)

Query: 14  LTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPER-- 71
           +T+ ++ Y+K   ID A  +F+ M  +++VS+  +++G+ QNG    A +L  +M E   
Sbjct: 183 MTAVMSLYAKCRQIDNAYKMFERMQHKDLVSWTTLVAGYAQNGHAKRALQLVLQMQEAGQ 242

Query: 72  --NVVSWTAMICGLAD-----------------------------------AGRVCEARK 94
             + V+  +++  +AD                                    G    AR 
Sbjct: 243 KPDSVTLVSILPAVADMKALRIGRSIHGYAFRSGFESLVNVTNALLDMYFKCGSARIARL 302

Query: 95  LFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAG-YVECCMMGE 153
           +F+ M  + VVSWN+M+ G  +NGE  EA   F  M  +  +     + G  + C  +G+
Sbjct: 303 VFKGMRSKTVVSWNTMIDGCAQNGESEEAFATFLKMLDEGEVPTRVTMMGVLLACANLGD 362

Query: 154 ------AIVLFEEME-ERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGG 206
                    L ++++ + NV    S+IS Y +   V+    +F  + + N V+W AMI G
Sbjct: 363 LERGWFVHKLLDKLKLDSNVSVMNSLISMYSKCKRVDIAASIFNNLEKTN-VTWNAMILG 421

Query: 207 FAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVR-- 264
           +A NG  KE+L LF  M+     G   +  +   +I     F    +A+     + VR  
Sbjct: 422 YAQNGCVKEALNLFCMMQS---QGIKLDCFTLVGVITALADFSVNRQAK-WIHGLAVRAC 477

Query: 265 ---DEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFM 321
              +    T+++D Y   G +  A  LF  M +R  + W AMI G   + +  E   LF 
Sbjct: 478 MDNNVFVSTALVDMYAKCGAIKTARKLFDMMQERHVITWNAMIDGYGTHGVGKETLDLFN 537

Query: 322 EMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILE------NCLIS 375
           EM+   V P + TF  +  A   +  ++ G     +L+    + D  LE      + ++ 
Sbjct: 538 EMQKGAVKPNDITFLSVISACSHSGFVEEG-----LLLFKSMQEDYYLEPTMDHYSAMVD 592

Query: 376 MYAKCGVIDNAYNIFSNM 393
           +  + G +D+A+N    M
Sbjct: 593 LLGRAGQLDDAWNFIQEM 610



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 91/350 (26%), Positives = 152/350 (43%), Gaps = 60/350 (17%)

Query: 4   RNHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARR 63
           R+  +SLV    + +  Y K G    A+ +F+ M  + VVS+N M+ G  QNG   EA  
Sbjct: 274 RSGFESLVNVTNALLDMYFKCGSARIARLVFKGMRSKTVVSWNTMIDGCAQNGESEEAFA 333

Query: 64  LFEEM------PERNVVSWTAMICG-LADAGRVCEARKLFEEMP-ERNVVSWNSMVVGLI 115
            F +M      P R  +    + C  L D  R     KL +++  + NV   NS++    
Sbjct: 334 TFLKMLDEGEVPTRVTMMGVLLACANLGDLERGWFVHKLLDKLKLDSNVSVMNSLISMYS 393

Query: 116 RNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEME------------- 162
           +   ++ A  +FN++   NV +WNAMI GY +   + EA+ LF  M+             
Sbjct: 394 KCKRVDIAASIFNNLEKTNV-TWNAMILGYAQNGCVKEALNLFCMMQSQGIKLDCFTLVG 452

Query: 163 --------------------------ERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKN 196
                                     + NV   T+++  Y + G ++    LF  M  ++
Sbjct: 453 VITALADFSVNRQAKWIHGLAVRACMDNNVFVSTALVDMYAKCGAIKTARKLFDMMQERH 512

Query: 197 VVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQN 256
           V++W AMI G+  +G  KE+L LF EM+      N+       S+I+     G +EE   
Sbjct: 513 VITWNAMIDGYGTHGVGKETLDLFNEMQKGAVKPNDITFL---SVISACSHSGFVEEGLL 569

Query: 257 LFDTV-------PVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVA 299
           LF ++       P  D   +++M+D     GQ+ +A+     MP +  ++
Sbjct: 570 LFKSMQEDYYLEPTMDH--YSAMVDLLGRAGQLDDAWNFIQEMPIKPGIS 617


>gi|222622042|gb|EEE56174.1| hypothetical protein OsJ_05117 [Oryza sativa Japonica Group]
          Length = 545

 Score =  277 bits (708), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 155/455 (34%), Positives = 254/455 (55%), Gaps = 2/455 (0%)

Query: 145 YVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRR-MPRKNVVSWTAM 203
           Y E     +A  LF+E+   +++++TS++S + +     +   +F   +   +     A 
Sbjct: 63  YAEFGRPADAGRLFDEIPHPDIISFTSLMSLHLKLDHHWKAISVFSHAIASGHRPDGFAA 122

Query: 204 IGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPV 263
           +G  + +G   +  +  +    I   G +  +  CN++++ Y R G+ E A+ +FD + V
Sbjct: 123 VGALSASGGLGDQRIGSVVHGLIFRCGLDSELVVCNALVDMYCRCGKFEPARTVFDRMLV 182

Query: 264 RDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEM 323
           +DE++W SM+ GY+    V +A   F+ MP +  V+WTA+I+G VQ++  ++A  LF +M
Sbjct: 183 KDEVTWGSMLYGYMKCVGVDSALSFFYQMPMKSTVSWTALITGHVQDKQPIQALELFGKM 242

Query: 324 RAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVI 383
              G  P + T   +  A      +DLGR IH    K+ + +++I+ N L+ MYAK G I
Sbjct: 243 LLEGHRPNHITIVGVLSACADIGALDLGRAIHGYGSKSNATTNIIVTNALMDMYAKSGSI 302

Query: 384 DNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSAC 443
            +A+++F  +  +D  +W +M+  F+  G   + +++F  ML SG  PNSVTF+ +LSAC
Sbjct: 303 ASAFSVFEEVQMKDAFTWTTMISSFTVQGNGRKAVELFWDMLRSGILPNSVTFVSVLSAC 362

Query: 444 SHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRI 503
           SHAGL+  G ELF+ M +VY I P  EHY  M++LLGR G ++EAE  +  +  EPD  I
Sbjct: 363 SHAGLIQEGRELFDKMREVYHIDPRLEHYGCMVDLLGRGGLLEEAEALIDHMDVEPDIVI 422

Query: 504 WGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMG 563
           W +LL AC    GN  +AE A   +++ +P +   +V+L N+YA S R  E   +R  M 
Sbjct: 423 WRSLLSAC-LAHGNDRLAEIAGMEIIKREPGDDGVYVLLWNMYALSNRWKEALDMRKQML 481

Query: 564 LKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
            + + K PGCSW+  +G +  FL  DK      EI
Sbjct: 482 SRKIYKKPGCSWIEVDGVVHEFLVEDKTHDARREI 516



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 97/452 (21%), Positives = 191/452 (42%), Gaps = 84/452 (18%)

Query: 8   KSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEE 67
           +S+  HL +      +   I        L P +  +S   +   + + GR ++A RLF+E
Sbjct: 20  RSVCHHLLTQCKTIRELQRIHAQALTHGLHPNQQSISCK-IFRSYAEFGRPADAGRLFDE 78

Query: 68  MPERNVVSWTAMIC--------------------------GLADAGRVCEARKLFEEMP- 100
           +P  +++S+T+++                           G A  G +  +  L ++   
Sbjct: 79  IPHPDIISFTSLMSLHLKLDHHWKAISVFSHAIASGHRPDGFAAVGALSASGGLGDQRIG 138

Query: 101 ------------ERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVEC 148
                       +  +V  N++V    R G+   AR VF+ M +K+ ++W +M+ GY++C
Sbjct: 139 SVVHGLIFRCGLDSELVVCNALVDMYCRCGKFEPARTVFDRMLVKDEVTWGSMLYGYMKC 198

Query: 149 CMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRM----PRKNVVSWTAMI 204
             +  A+  F +M  ++ V+WT++I+G+ +  +  +   LF +M     R N ++   ++
Sbjct: 199 VGVDSALSFFYQMPMKSTVSWTALITGHVQDKQPIQALELFGKMLLEGHRPNHITIVGVL 258

Query: 205 GGFAWNGFHKESLLLFIEMKGICDNGN-NCNVQSCNSMINGYIRFGRLEEAQNLFDTVPV 263
              A  G    +L L   + G     N   N+   N++++ Y + G +  A ++F+ V +
Sbjct: 259 SACADIG----ALDLGRAIHGYGSKSNATTNIIVTNALMDMYAKSGSIASAFSVFEEVQM 314

Query: 264 RDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEM 323
           +D  +WT+MI  +   G    A  LF          W  + SG++ N             
Sbjct: 315 KDAFTWTTMISSFTVQGNGRKAVELF----------WDMLRSGILPN------------- 351

Query: 324 RAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILEN--CLISMYAKCG 381
                   + TF  +  A      I  GR++    M+     D  LE+  C++ +  + G
Sbjct: 352 --------SVTFVSVLSACSHAGLIQEGRELF-DKMREVYHIDPRLEHYGCMVDLLGRGG 402

Query: 382 VIDNAYNIFSNM-VSRDLVSWNSMVMGFSHHG 412
           +++ A  +  +M V  D+V W S++     HG
Sbjct: 403 LLEEAEALIDHMDVEPDIVIWRSLLSACLAHG 434


>gi|302814190|ref|XP_002988779.1| hypothetical protein SELMODRAFT_128847 [Selaginella moellendorffii]
 gi|300143350|gb|EFJ10041.1| hypothetical protein SELMODRAFT_128847 [Selaginella moellendorffii]
          Length = 796

 Score =  276 bits (707), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 181/630 (28%), Positives = 315/630 (50%), Gaps = 52/630 (8%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMP-ERNVVSW 76
           +  Y K G +  A+  F  + ++N  S+ +ML+ + QNG    A  L++ M  + N V +
Sbjct: 65  VRAYGKCGSVASARVAFDAIARKNDYSWGSMLTAYAQNGHYRAALDLYKRMDLQPNPVVY 124

Query: 77  TAMICGLA-----DAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMP 131
           T ++   A     + G+   +R    +  + +V+  NS++    + G L +A+++F  M 
Sbjct: 125 TTVLGACASIEALEEGKAIHSRISGTKGLKLDVILENSLLTMYAKCGSLEDAKRLFERMS 184

Query: 132 -IKNVISWNAMIAGYVECCMMGEAIVLFEEME-ERNVVTWTSMISG-------------- 175
             ++V SWNAMIA Y +     EAI L+E+M+ E +V T+TS++S               
Sbjct: 185 GRRSVSSWNAMIAAYAQSGHFEEAIRLYEDMDVEPSVRTFTSVLSACSNLGLLDQGRKIH 244

Query: 176 ---------------------YCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHK 214
                                Y R   +++   +F+R+PR++VVSW+AMI  FA      
Sbjct: 245 ALISSRGTELDLSLQNALLTMYARCKCLDDAAKIFQRLPRRDVVSWSAMIAAFAETDLFD 304

Query: 215 ESLLLF--IEMKGICDNGNN--CNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWT 270
           E++  +  ++++G+  N       + +C S+  G +R GR    Q L +   +   ++ T
Sbjct: 305 EAIEFYSKMQLEGVRPNYYTFASVLLACASV--GDLRAGRAVHDQILGNGYKI-TLVNGT 361

Query: 271 SMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMR-AHGVP 329
           +++D Y S G +  A  LF  + +RD   WT +I G  +         L+ EM+    VP
Sbjct: 362 ALVDLYTSYGSLDEARSLFDQIENRDEGLWTVLIGGYSKQGHRTGVLELYREMKNTTKVP 421

Query: 330 PLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNI 389
                +S +  A  +       RQ H  +      SD +L   L++MY++ G +++A  +
Sbjct: 422 ATKIIYSCVISACASLGAFADARQAHSDIEADGMISDFVLATSLVNMYSRWGNLESARQV 481

Query: 390 FSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLV 449
           F  M SRD ++W +++ G++ HG     L +++ M   G  P+ +TF+ +L ACSHAGL 
Sbjct: 482 FDKMSSRDTLAWTTLIAGYAKHGEHGLALGLYKEMELEGAEPSELTFMVVLYACSHAGLQ 541

Query: 450 SRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLG 509
            +G +LF ++   Y + P   HY  +I+LL RAG++ +AEE +  +P EP+   W +LLG
Sbjct: 542 EQGKQLFISIQSDYAMHPNIAHYSCIIDLLSRAGRLSDAEELINAMPVEPNDVTWSSLLG 601

Query: 510 ACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRK 569
           A      + + A HAA ++ +LDP++  ++V+L N++A +G       +R  M  +GV+K
Sbjct: 602 ASRI-HKDVKRATHAAGQITKLDPVDPASYVLLSNVHAVTGNLAGMASVRNTMVARGVKK 660

Query: 570 VPGCSWLMRNGGIQMFLSGDKIPAQVAEIL 599
             G SW+     I  F  GD    +  EI 
Sbjct: 661 RRGSSWIEVADQIHEFNVGDNSHPRFQEIF 690



 Score =  150 bits (378), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 111/446 (24%), Positives = 212/446 (47%), Gaps = 53/446 (11%)

Query: 11  VVHLTSSITKYSKRGFIDEAKALFQLMP-QRNVVSYNAMLSGFLQNGRLSEARRLFEEMP 69
           V+   S +T Y+K G +++AK LF+ M  +R+V S+NAM++ + Q+G   EA RL+E+M 
Sbjct: 157 VILENSLLTMYAKCGSLEDAKRLFERMSGRRSVSSWNAMIAAYAQSGHFEEAIRLYEDMD 216

Query: 70  -ERNVVSWTAMICGLADAGRVCEARKLFEEMPER----NVVSWNSMVVGLIRNGELNEAR 124
            E +V ++T+++   ++ G + + RK+   +  R    ++   N+++    R   L++A 
Sbjct: 217 VEPSVRTFTSVLSACSNLGLLDQGRKIHALISSRGTELDLSLQNALLTMYARCKCLDDAA 276

Query: 125 KVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNV------------------ 166
           K+F  +P ++V+SW+AMIA + E  +  EAI  + +M+   V                  
Sbjct: 277 KIFQRLPRRDVVSWSAMIAAFAETDLFDEAIEFYSKMQLEGVRPNYYTFASVLLACASVG 336

Query: 167 ---------------------VTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIG 205
                                V  T+++  Y   G ++E   LF ++  ++   WT +IG
Sbjct: 337 DLRAGRAVHDQILGNGYKITLVNGTALVDLYTSYGSLDEARSLFDQIENRDEGLWTVLIG 396

Query: 206 GFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVP--- 262
           G++  G     L L+ EMK          + SC  +I+     G   +A+     +    
Sbjct: 397 GYSKQGHRTGVLELYREMKNTTKVPATKIIYSC--VISACASLGAFADARQAHSDIEADG 454

Query: 263 -VRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFM 321
            + D +  TS+++ Y   G + +A  +F  M  RD +AWT +I+G  ++     A  L+ 
Sbjct: 455 MISDFVLATSLVNMYSRWGNLESARQVFDKMSSRDTLAWTTLIAGYAKHGEHGLALGLYK 514

Query: 322 EMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTES-ESDLILENCLISMYAKC 380
           EM   G  P   TF V+  A       + G+Q+   +    +   ++   +C+I + ++ 
Sbjct: 515 EMELEGAEPSELTFMVVLYACSHAGLQEQGKQLFISIQSDYAMHPNIAHYSCIIDLLSRA 574

Query: 381 GVIDNAYNIFSNM-VSRDLVSWNSMV 405
           G + +A  + + M V  + V+W+S++
Sbjct: 575 GRLSDAEELINAMPVEPNDVTWSSLL 600



 Score =  142 bits (358), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 106/469 (22%), Positives = 213/469 (45%), Gaps = 36/469 (7%)

Query: 72  NVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMP 131
           NV     ++      G V  AR  F+ +  +N  SW SM+    +NG    A  ++  M 
Sbjct: 57  NVFLGNEIVRAYGKCGSVASARVAFDAIARKNDYSWGSMLTAYAQNGHYRAALDLYKRMD 116

Query: 132 IK-NVISWNAMIA--GYVECCMMGEAI---VLFEEMEERNVVTWTSMISGYCRAGEVEEG 185
           ++ N + +  ++     +E    G+AI   +   +  + +V+   S+++ Y + G +E+ 
Sbjct: 117 LQPNPVVYTTVLGACASIEALEEGKAIHSRISGTKGLKLDVILENSLLTMYAKCGSLEDA 176

Query: 186 YCLFRRMP-RKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMING 244
             LF RM  R++V SW AMI  +A +G  +E++ L+ +M          +V++  S+++ 
Sbjct: 177 KRLFERMSGRRSVSSWNAMIAAYAQSGHFEEAIRLYEDMD------VEPSVRTFTSVLSA 230

Query: 245 YIRFGRLEEAQNLFDTVPVR----DEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAW 300
               G L++ + +   +  R    D     +++  Y     + +A  +F  +P RD V+W
Sbjct: 231 CSNLGLLDQGRKIHALISSRGTELDLSLQNALLTMYARCKCLDDAAKIFQRLPRRDVVSW 290

Query: 301 TAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMK 360
           +AMI+   + +LF EA   + +M+  GV P   TF+ +  A  +  ++  GR +H  ++ 
Sbjct: 291 SAMIAAFAETDLFDEAIEFYSKMQLEGVRPNYYTFASVLLACASVGDLRAGRAVHDQILG 350

Query: 361 TESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKV 420
              +  L+    L+ +Y   G +D A ++F  + +RD   W  ++ G+S  G     L++
Sbjct: 351 NGYKITLVNGTALVDLYTSYGSLDEARSLFDQIENRDEGLWTVLIGGYSKQGHRTGVLEL 410

Query: 421 FESMLESGTHP-NSVTFLGILSACSHAGLVSRGWELF-----NAMFDVYKIQPGPEHYVS 474
           +  M  +   P   + +  ++SAC+  G  +   +       + M   + +        S
Sbjct: 411 YREMKNTTKVPATKIIYSCVISACASLGAFADARQAHSDIEADGMISDFVLA------TS 464

Query: 475 MINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEH 523
           ++N+  R G ++ A +   ++    D   W  L+       G A+  EH
Sbjct: 465 LVNMYSRWGNLESARQVFDKMS-SRDTLAWTTLIA------GYAKHGEH 506



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 75/301 (24%), Positives = 134/301 (44%), Gaps = 41/301 (13%)

Query: 232 NCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHN 291
           + NV   N ++  Y + G +  A+  FD +  +++ SW SM+  Y   G    A  L+  
Sbjct: 55  SANVFLGNEIVRAYGKCGSVASARVAFDAIARKNDYSWGSMLTAYAQNGHYRAALDLYKR 114

Query: 292 MPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLG 351
           M                                   + P    ++ + GA  +   ++ G
Sbjct: 115 MD----------------------------------LQPNPVVYTTVLGACASIEALEEG 140

Query: 352 RQIHCVLMKTES-ESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLV-SWNSMVMGFS 409
           + IH  +  T+  + D+ILEN L++MYAKCG +++A  +F  M  R  V SWN+M+  ++
Sbjct: 141 KAIHSRISGTKGLKLDVILENSLLTMYAKCGSLEDAKRLFERMSGRRSVSSWNAMIAAYA 200

Query: 410 HHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGP 469
             G   E ++++E M      P+  TF  +LSACS+ GL+ +G ++ +A+      +   
Sbjct: 201 QSGHFEEAIRLYEDM---DVEPSVRTFTSVLSACSNLGLLDQGRKI-HALISSRGTELDL 256

Query: 470 EHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLL 529
               +++ +  R   + +A +   RLP   D   W A++ A    +   E  E  +K  L
Sbjct: 257 SLQNALLTMYARCKCLDDAAKIFQRLP-RRDVVSWSAMIAAFAETDLFDEAIEFYSKMQL 315

Query: 530 E 530
           E
Sbjct: 316 E 316



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 63/280 (22%), Positives = 130/280 (46%), Gaps = 41/280 (14%)

Query: 5   NHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRL 64
           N  K  +V+ T+ +  Y+  G +DEA++LF  +  R+   +  ++ G+ + G  +    L
Sbjct: 351 NGYKITLVNGTALVDLYTSYGSLDEARSLFDQIENRDEGLWTVLIGGYSKQGHRTGVLEL 410

Query: 65  FEEM------PERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLI--- 115
           + EM      P   ++ ++ +I   A  G   +AR+   ++    ++S   +   L+   
Sbjct: 411 YREMKNTTKVPATKII-YSCVISACASLGAFADARQAHSDIEADGMISDFVLATSLVNMY 469

Query: 116 -RNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMIS 174
            R G L  AR+VF+ M  ++ ++W  +IAGY +    G A+ L++EME            
Sbjct: 470 SRWGNLESARQVFDKMSSRDTLAWTTLIAGYAKHGEHGLALGLYKEME------------ 517

Query: 175 GYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCN 234
                 E  E             +++  ++   +  G  ++   LFI ++   D   + N
Sbjct: 518 --LEGAEPSE-------------LTFMVVLYACSHAGLQEQGKQLFISIQS--DYAMHPN 560

Query: 235 VQSCNSMINGYIRFGRLEEAQNLFDTVPVR-DEISWTSMI 273
           +   + +I+   R GRL +A+ L + +PV  ++++W+S++
Sbjct: 561 IAHYSCIIDLLSRAGRLSDAEELINAMPVEPNDVTWSSLL 600



 Score = 53.9 bits (128), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/159 (21%), Positives = 72/159 (45%), Gaps = 4/159 (2%)

Query: 352 RQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHH 411
           RQIH  +    S +++ L N ++  Y KCG + +A   F  +  ++  SW SM+  ++ +
Sbjct: 44  RQIHDRISGAAS-ANVFLGNEIVRAYGKCGSVASARVAFDAIARKNDYSWGSMLTAYAQN 102

Query: 412 GLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEH 471
           G     L +++ M      PN V +  +L AC+    +  G  + + +     ++     
Sbjct: 103 GHYRAALDLYKRM---DLQPNPVVYTTVLGACASIEALEEGKAIHSRISGTKGLKLDVIL 159

Query: 472 YVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGA 510
             S++ +  + G +++A+    R+        W A++ A
Sbjct: 160 ENSLLTMYAKCGSLEDAKRLFERMSGRRSVSSWNAMIAA 198


>gi|222630191|gb|EEE62323.1| hypothetical protein OsJ_17112 [Oryza sativa Japonica Group]
          Length = 591

 Score =  276 bits (707), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 176/545 (32%), Positives = 275/545 (50%), Gaps = 58/545 (10%)

Query: 88  RVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVE 147
           R+C +R     +    +V+WNS+V    R G   +A +VF+ M +++ +SWN++IA    
Sbjct: 45  RLCASRPWLRHV----LVAWNSLVSMYARCGRREDAARVFDEMRVRDAVSWNSLIAASRG 100

Query: 148 CCMMGEAIVLFEEMEERNV-----VTWTSMISGYCRAGEVEEGYC--------------- 187
               G+A+ LF  M   +       T+T+++S   RAG      C               
Sbjct: 101 A---GDALALFRRMLRSDARACDRATFTTVLSECARAGAASLPACAMVHGLVVSCGFEAE 157

Query: 188 ----------------------LFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKG 225
                                 +F  M  KNV++WTAMI G A    +KES  LF +M  
Sbjct: 158 VPVGNALVTAYFECGSPASAERVFHGMAEKNVITWTAMISGMARAELYKESFSLFGQMIR 217

Query: 226 ICDNGN---NCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTS-MIDGYLSVGQ 281
             D  N   +C + +C   +    R G  ++   L       D++   S ++D Y   G 
Sbjct: 218 TVDANNATYSCALLACARSLAA--REG--QQVHGLVVKAGFEDDLHVESGLMDVYSKCGL 273

Query: 282 VSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGA 341
           + +A  +F +  + D V  T ++ G  QN L  +A  LF EM   G      T S + GA
Sbjct: 274 MEDALTVFRSCREPDEVFLTVILVGFAQNGLEEKAFELFAEMVGAGNEIDENTVSAVLGA 333

Query: 342 AGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSW 401
            GA+A   LG+QIH +++K     +  + N L++MY+KCG +  +  +F  M S++ VSW
Sbjct: 334 FGASAPFALGKQIHALVIKRCFGVNTYVCNGLVNMYSKCGELRESVRVFDEMPSKNSVSW 393

Query: 402 NSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFD 461
           NS++  F+ HG  +E  ++FESM   G  P  VTFL +L ACSH G   +G E+ N+M  
Sbjct: 394 NSIIAAFARHGHGSEVYQLFESMKADGAKPTDVTFLSLLHACSHVGSAKKGLEILNSMSS 453

Query: 462 VYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIA 521
            Y + P  EHY  ++++LGRAG + +A+ F+   PF  +  +W AL+GAC F  GN+E+ 
Sbjct: 454 QYGVLPRMEHYACVVDMLGRAGLLDDAKSFIEDGPFTDNALLWQALMGACSF-HGNSEVG 512

Query: 522 EHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGG 581
           ++AA++LL LDP    A+V+L NIY++ GR  +  K+   M   G+RK  G SW+     
Sbjct: 513 KYAAEKLLLLDPSCTAAYVLLSNIYSSEGRWDDRAKVMKRMSEMGLRKDTGKSWIELEKE 572

Query: 582 IQMFL 586
           +  F+
Sbjct: 573 VHSFV 577



 Score =  101 bits (252), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 92/392 (23%), Positives = 173/392 (44%), Gaps = 71/392 (18%)

Query: 46  NAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEM---PER 102
           NA+++ + + G  + A R+F  M E+NV++WTAMI G+A A    E+  LF +M    + 
Sbjct: 162 NALVTAYFECGSPASAERVFHGMAEKNVITWTAMISGMARAELYKESFSLFGQMIRTVDA 221

Query: 103 NVVSWNSMVVGLIRNGELNEARKVFNSMPIK-----NVISWNAMIAGYVECCMMGEAIVL 157
           N  +++  ++   R+    E ++V + + +K     ++   + ++  Y +C +M +A+ +
Sbjct: 222 NNATYSCALLACARSLAAREGQQV-HGLVVKAGFEDDLHVESGLMDVYSKCGLMEDALTV 280

Query: 158 FEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMP------RKNVVSWTAMIGGFAWN- 210
           F    E + V  T ++ G+ + G  E+ + LF  M        +N VS  A++G F  + 
Sbjct: 281 FRSCREPDEVFLTVILVGFAQNGLEEKAFELFAEMVGAGNEIDENTVS--AVLGAFGASA 338

Query: 211 --GFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEIS 268
                K+   L I+           N   CN ++N Y + G L E+  +FD +P ++ +S
Sbjct: 339 PFALGKQIHALVIK------RCFGVNTYVCNGLVNMYSKCGELRESVRVFDEMPSKNSVS 392

Query: 269 WTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGV 328
           W S+I  +   G  S  Y LF +                               M+A G 
Sbjct: 393 WNSIIAAFARHGHGSEVYQLFES-------------------------------MKADGA 421

Query: 329 PPLNATFSVLFGAAGATANIDLGRQI-------HCVLMKTESESDLILENCLISMYAKCG 381
            P + TF  L  A     +   G +I       + VL + E  +      C++ M  + G
Sbjct: 422 KPTDVTFLSLLHACSHVGSAKKGLEILNSMSSQYGVLPRMEHYA------CVVDMLGRAG 475

Query: 382 VIDNAYNIFSN-MVSRDLVSWNSMVMGFSHHG 412
           ++D+A +   +   + + + W +++   S HG
Sbjct: 476 LLDDAKSFIEDGPFTDNALLWQALMGACSFHG 507



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 54/199 (27%), Positives = 92/199 (46%), Gaps = 17/199 (8%)

Query: 12  VHLTSSITK-YSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMP- 69
           +H+ S +   YSK G +++A  +F+   + + V    +L GF QNG   +A  LF EM  
Sbjct: 258 LHVESGLMDVYSKCGLMEDALTVFRSCREPDEVFLTVILVGFAQNGLEEKAFELFAEMVG 317

Query: 70  -----ERNVVSWTAMICGLADAGRVCEARKLFEEMPER----NVVSWNSMVVGLIRNGEL 120
                + N VS  A++     +      +++   + +R    N    N +V    + GEL
Sbjct: 318 AGNEIDENTVS--AVLGAFGASAPFALGKQIHALVIKRCFGVNTYVCNGLVNMYSKCGEL 375

Query: 121 NEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNV----VTWTSMISGY 176
            E+ +VF+ MP KN +SWN++IA +       E   LFE M+        VT+ S++   
Sbjct: 376 RESVRVFDEMPSKNSVSWNSIIAAFARHGHGSEVYQLFESMKADGAKPTDVTFLSLLHAC 435

Query: 177 CRAGEVEEGYCLFRRMPRK 195
              G  ++G  +   M  +
Sbjct: 436 SHVGSAKKGLEILNSMSSQ 454



 Score = 47.8 bits (112), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 34/135 (25%), Positives = 65/135 (48%), Gaps = 10/135 (7%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNV---- 73
           +  YSK G + E+  +F  MP +N VS+N++++ F ++G  SE  +LFE M         
Sbjct: 366 VNMYSKCGELRESVRVFDEMPSKNSVSWNSIIAAFARHGHGSEVYQLFESMKADGAKPTD 425

Query: 74  VSWTAMICGLADAGRVCEARKLFEEMPERNVV-----SWNSMVVGLIRNGELNEARKVFN 128
           V++ +++   +  G   +  ++   M  +  V      +  +V  L R G L++A+    
Sbjct: 426 VTFLSLLHACSHVGSAKKGLEILNSMSSQYGVLPRMEHYACVVDMLGRAGLLDDAKSFIE 485

Query: 129 SMPI-KNVISWNAMI 142
             P   N + W A++
Sbjct: 486 DGPFTDNALLWQALM 500


>gi|449523327|ref|XP_004168675.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g19720-like, partial [Cucumis sativus]
          Length = 1090

 Score =  276 bits (707), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 189/665 (28%), Positives = 322/665 (48%), Gaps = 91/665 (13%)

Query: 15  TSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLF--------- 65
           T  ++ Y+K G + +A+ +F  M +RN+ +++AM+  + +  R  E   LF         
Sbjct: 118 TKLVSMYAKCGCLKDARKVFDGMQERNLYTWSAMIGAYSREQRWKEVVELFFLMMGDGVL 177

Query: 66  ----------------EEMPERNVVSWTAMICGLA--------------DAGRVCEARKL 95
                           E++    ++    + CGL+                G++  ARK 
Sbjct: 178 PDAFLFPKILQACGNCEDLETVKLIHSLVIRCGLSCYMRLSNSILTAFVKCGKLSLARKF 237

Query: 96  FEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKN----VISWNAMIAGYVECCMM 151
           F  M ER+ VSWN M+ G  + G  +EAR++ ++M  +     ++++N MIA Y +    
Sbjct: 238 FGNMDERDGVSWNVMIAGYCQKGNGDEARRLLDTMSNQGFKPGLVTYNIMIASYSQLGDC 297

Query: 152 GEAIVLFEEMEE----RNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGF 207
              I L ++ME      +V TWTSMISG+ ++  + +    F++M    V   T  I   
Sbjct: 298 DLVIDLKKKMESVGLAPDVYTWTSMISGFSQSSRISQALDFFKKMILAGVEPNTITIASA 357

Query: 208 AWNGFHKESLLLFIEMKGICDN-GNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDE 266
                  +SL   +E+       G        NS+I+ Y + G+LE A+++FDT+  +D 
Sbjct: 358 TSACASLKSLQNGLEIHCFAIKMGIARETLVGNSLIDMYSKCGKLEAARHVFDTILEKDV 417

Query: 267 ISWTSMIDGYLSVGQVSNAYYLFHNMPDR----DAVAWTAMISGLVQN-------ELFV- 314
            +W SMI GY   G    AY LF  + +     + V W AMISG +QN       +LF  
Sbjct: 418 YTWNSMIGGYCQAGYGGKAYELFMRLRESTVMPNVVTWNAMISGCIQNGDEDQAMDLFQI 477

Query: 315 ----------------------------EATYLFMEMRAHGVPPLNAT-FSVLFGAAGAT 345
                                       +A  +F +M++    P + T  S+L   A   
Sbjct: 478 MEKDGGVKRNTASWNSLIAGYHQLGEKNKALAIFRQMQSLNFSPNSVTILSILPACANVM 537

Query: 346 ANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMV 405
           A   + ++IH  +++   ES+L + N L+  YAK G I  +  +F+ M S+D+++WNS++
Sbjct: 538 AEKKI-KEIHGCVLRRNLESELAVANSLVDTYAKSGNIKYSRTVFNGMSSKDIITWNSII 596

Query: 406 MGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKI 465
            G+  HG ++   ++F+ M   G  PN  T   I+ A   AG+V +G  +F+++ + ++I
Sbjct: 597 AGYILHGCSDSAFQLFDQMRNLGIRPNRGTLASIIHAYGIAGMVDKGRHVFSSITEEHQI 656

Query: 466 QPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAA 525
            P  +HY++M++L GR+G++ +A EF+  +P EPD  IW +LL AC F  GN  +A  AA
Sbjct: 657 LPTLDHYLAMVDLYGRSGRLADAIEFIEDMPIEPDVSIWTSLLTACRF-HGNLNLAVLAA 715

Query: 526 KRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMF 585
           KRL EL+P N   + +L   YA  G+  +  K+R       ++K     W+     + +F
Sbjct: 716 KRLHELEPDNHVIYRLLVQAYALYGKFEQTLKVRKLGKESAMKKCTAQCWVEVRNKVHLF 775

Query: 586 LSGDK 590
           ++GD+
Sbjct: 776 VTGDQ 780



 Score =  145 bits (366), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 129/520 (24%), Positives = 214/520 (41%), Gaps = 85/520 (16%)

Query: 114 LIRNGELNEARKVFNSMPIK-NVISWNAMIAGYVECCMMGEAIVLFEEMEER-------N 165
           L  NG L EA    +S+  + + +S N  I   ++ C+   +I L  E+  R       N
Sbjct: 55  LCSNGLLREAITAIDSISKRGSKLSTNTYI-NLLQTCIDVGSIELGRELHVRMGLVHRVN 113

Query: 166 VVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKG 225
               T ++S Y + G +++   +F  M  +N+ +W+AMIG ++     KE + LF  M G
Sbjct: 114 PFVETKLVSMYAKCGCLKDARKVFDGMQERNLYTWSAMIGAYSREQRWKEVVELFFLMMG 173

Query: 226 ---------------ICDN-----------------GNNCNVQSCNSMINGYIRFGRLEE 253
                           C N                 G +C ++  NS++  +++ G+L  
Sbjct: 174 DGVLPDAFLFPKILQACGNCEDLETVKLIHSLVIRCGLSCYMRLSNSILTAFVKCGKLSL 233

Query: 254 AQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDR------------------ 295
           A+  F  +  RD +SW  MI GY   G    A  L   M ++                  
Sbjct: 234 ARKFFGNMDERDGVSWNVMIAGYCQKGNGDEARRLLDTMSNQGFKPGLVTYNIMIASYSQ 293

Query: 296 ---------------------DAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNAT 334
                                D   WT+MISG  Q+    +A   F +M   GV P   T
Sbjct: 294 LGDCDLVIDLKKKMESVGLAPDVYTWTSMISGFSQSSRISQALDFFKKMILAGVEPNTIT 353

Query: 335 FSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMV 394
            +    A  +  ++  G +IHC  +K     + ++ N LI MY+KCG ++ A ++F  ++
Sbjct: 354 IASATSACASLKSLQNGLEIHCFAIKMGIARETLVGNSLIDMYSKCGKLEAARHVFDTIL 413

Query: 395 SRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWE 454
            +D+ +WNSM+ G+   G   +  ++F  + ES   PN VT+  ++S C   G   +  +
Sbjct: 414 EKDVYTWNSMIGGYCQAGYGGKAYELFMRLRESTVMPNVVTWNAMISGCIQNGDEDQAMD 473

Query: 455 LFNAMFDVYKIQPGPEHYVSMI---NLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGAC 511
           LF  M     ++     + S+I   + LG   K       +  L F P+     ++L AC
Sbjct: 474 LFQIMEKDGGVKRNTASWNSLIAGYHQLGEKNKALAIFRQMQSLNFSPNSVTILSILPAC 533

Query: 512 GFCEGNAEIAE-HAAKRLLELDPLNAPAHVVLCNIYAASG 550
                  +I E H       L+   A A+  L + YA SG
Sbjct: 534 ANVMAEKKIKEIHGCVLRRNLESELAVAN-SLVDTYAKSG 572



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 71/268 (26%), Positives = 123/268 (45%), Gaps = 19/268 (7%)

Query: 304 ISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTES 363
           +S L  N L  EA      +   G      T+  L        +I+LGR++H V M    
Sbjct: 52  LSYLCSNGLLREAITAIDSISKRGSKLSTNTYINLLQTCIDVGSIELGRELH-VRMGLVH 110

Query: 364 ESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFES 423
             +  +E  L+SMYAKCG + +A  +F  M  R+L +W++M+  +S      E +++F  
Sbjct: 111 RVNPFVETKLVSMYAKCGCLKDARKVFDGMQERNLYTWSAMIGAYSREQRWKEVVELFFL 170

Query: 424 MLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYV----SMINLL 479
           M+  G  P++  F  IL AC +   +    +L +++     I+ G   Y+    S++   
Sbjct: 171 MMGDGVLPDAFLFPKILQACGNCEDLET-VKLIHSLV----IRCGLSCYMRLSNSILTAF 225

Query: 480 GRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCE-GNAEIAEHAAKRLLE-LDPLNAP 537
            + GK+  A +F   +  E D   W  ++   G+C+ GN +     A+RLL+ +      
Sbjct: 226 VKCGKLSLARKFFGNMD-ERDGVSWNVMIA--GYCQKGNGD----EARRLLDTMSNQGFK 278

Query: 538 AHVVLCNIYAASGRHVEEHKLRMDMGLK 565
             +V  NI  AS   + +  L +D+  K
Sbjct: 279 PGLVTYNIMIASYSQLGDCDLVIDLKKK 306



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 48/200 (24%), Positives = 94/200 (47%), Gaps = 24/200 (12%)

Query: 3   ERNHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEAR 62
            RN    L V   S +  Y+K G I  ++ +F  M  ++++++N++++G++ +G    A 
Sbjct: 551 RRNLESELAV-ANSLVDTYAKSGNIKYSRTVFNGMSSKDIITWNSIIAGYILHGCSDSAF 609

Query: 63  RLFEEM------PERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVV-----SWNSMV 111
           +LF++M      P R  ++  ++I     AG V + R +F  + E + +      + +MV
Sbjct: 610 QLFDQMRNLGIRPNRGTLA--SIIHAYGIAGMVDKGRHVFSSITEEHQILPTLDHYLAMV 667

Query: 112 VGLIRNGELNEARKVFNSMPIKNVIS-WNAMIAGYVECCMMGE------AIVLFEEMEER 164
               R+G L +A +    MPI+  +S W +++     C   G       A     E+E  
Sbjct: 668 DLYGRSGRLADAIEFIEDMPIEPDVSIWTSLLTA---CRFHGNLNLAVLAAKRLHELEPD 724

Query: 165 NVVTWTSMISGYCRAGEVEE 184
           N V +  ++  Y   G+ E+
Sbjct: 725 NHVIYRLLVQAYALYGKFEQ 744


>gi|242056803|ref|XP_002457547.1| hypothetical protein SORBIDRAFT_03g009160 [Sorghum bicolor]
 gi|241929522|gb|EES02667.1| hypothetical protein SORBIDRAFT_03g009160 [Sorghum bicolor]
          Length = 762

 Score =  276 bits (707), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 177/568 (31%), Positives = 290/568 (51%), Gaps = 43/568 (7%)

Query: 41  NVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMP 100
           +VV  N +L  + + G ++ ARR+F EMP R+ +++ AMI G +  GR  EA +LF  M 
Sbjct: 167 SVVVCNTLLDAYCKQGFIAAARRVFLEMPHRDSITYNAMIMGCSRQGRHGEALELFAAMR 226

Query: 101 ERNV----VSWNSMVVGLIRNGELNEARKV----FNSMPIKNVISWNAMIAGYVECCMMG 152
              V     +++S++       +L+  R++      + P  NV   NA++  Y +C  +G
Sbjct: 227 REGVDTSHFTFSSLLTVATGMVDLHLGRQIHGLFVRANPSCNVFVNNALLDFYSKCDSLG 286

Query: 153 EAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGF 212
           +   LF+EM ER                               + VS+  MI   +WN  
Sbjct: 287 DLKQLFDEMSER-------------------------------DNVSYNVMISACSWNRC 315

Query: 213 HKESLLLFIEMKGICDNGNNCNVQSCNSMING--YIRFGRLEEAQNLFDTVPVRDEISWT 270
              +L LF +M+ +  +       S  S+     +I+ GR   AQ +   + + D +   
Sbjct: 316 GGMALQLFRDMQTLGFDRRTLPYASLLSVAGALPHIKIGRQIHAQLILHGLTLEDFVG-N 374

Query: 271 SMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPP 330
           ++ID Y   G +  A  +F    D+ A++WTA+I+G VQN    EA  LF +MR  G+ P
Sbjct: 375 ALIDMYSKCGMLDAAKTIFAYKSDKTAISWTALITGCVQNGQNEEALQLFCDMRRAGLSP 434

Query: 331 LNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIF 390
             AT S +  ++ + A I +GRQ+H  L K+     +   + L+ MYAKCG +D A   F
Sbjct: 435 DRATCSSIMKSSSSLAVIGIGRQLHAYLTKSGHMPSVFSGSALLDMYAKCGCLDEAIRTF 494

Query: 391 SNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVS 450
           + M  ++ ++WN+++  ++ +G A   +++F+SML  G  P+ VTFL +L+AC H GL  
Sbjct: 495 NEMPEKNSITWNAVISAYAQYGQAKNAIRMFDSMLHCGLCPDPVTFLSVLAACGHNGLAE 554

Query: 451 RGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGA 510
              + F+ M   Y + P  EHY  +I+ LGRAG   + ++ +  +PFE D  IW ++L +
Sbjct: 555 ECMKYFDLMRYYYSMSPWKEHYSCVIDTLGRAGCFDKIQKVIDEMPFEDDPIIWSSILHS 614

Query: 511 CGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKV 570
           C    GN ++A  AA++L  + P +A A+V+L NIYA +G      +++  M  +GV+K 
Sbjct: 615 CRI-YGNQDLATVAAEKLFTMVPTDATAYVILSNIYAKAGNWEGAARVKKIMRDRGVKKE 673

Query: 571 PGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
            G SW+     I MF S D     + EI
Sbjct: 674 SGNSWVEIKQKIYMFSSNDHTNPMIDEI 701



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 117/488 (23%), Positives = 196/488 (40%), Gaps = 66/488 (13%)

Query: 11  VVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPE 70
           VV   + +  Y K+GFI  A+ +F  MP R+ ++YNAM+ G  + GR  EA  LF  M  
Sbjct: 168 VVVCNTLLDAYCKQGFIAAARRVFLEMPHRDSITYNAMIMGCSRQGRHGEALELFAAMRR 227

Query: 71  RNV-------VSWTAMICGLADAGRVCEARKLF-EEMPERNVVSWNSMVVGLIRNGELNE 122
             V        S   +  G+ D     +   LF    P  NV   N+++    +   L +
Sbjct: 228 EGVDTSHFTFSSLLTVATGMVDLHLGRQIHGLFVRANPSCNVFVNNALLDFYSKCDSLGD 287

Query: 123 ARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEME----ERNVVTWTSMIS---- 174
            +++F+ M  ++ +S+N MI+        G A+ LF +M+    +R  + + S++S    
Sbjct: 288 LKQLFDEMSERDNVSYNVMISACSWNRCGGMALQLFRDMQTLGFDRRTLPYASLLSVAGA 347

Query: 175 -------------------------------GYCRAGEVEEGYCLFRRMPRKNVVSWTAM 203
                                           Y + G ++    +F     K  +SWTA+
Sbjct: 348 LPHIKIGRQIHAQLILHGLTLEDFVGNALIDMYSKCGMLDAAKTIFAYKSDKTAISWTAL 407

Query: 204 IGGFAWNGFHKESLLLFIEMK--GICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTV 261
           I G   NG ++E+L LF +M+  G+  +   C+    +S     I  GR   A  L  + 
Sbjct: 408 ITGCVQNGQNEEALQLFCDMRRAGLSPDRATCSSIMKSSSSLAVIGIGRQLHAY-LTKSG 466

Query: 262 PVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFM 321
            +    S ++++D Y   G +  A   F+ MP+++++ W A+IS   Q      A  +F 
Sbjct: 467 HMPSVFSGSALLDMYAKCGCLDEAIRTFNEMPEKNSITWNAVISAYAQYGQAKNAIRMFD 526

Query: 322 EMRAHGVPPLNATFSVLFGAAG-------ATANIDLGRQIHCVLMKTESESDLILENCLI 374
            M   G+ P   TF  +  A G            DL R  + +    E  S      C+I
Sbjct: 527 SMLHCGLCPDPVTFLSVLAACGHNGLAEECMKYFDLMRYYYSMSPWKEHYS------CVI 580

Query: 375 SMYAKCGVIDNAYNIFSNM-VSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNS 433
               + G  D    +   M    D + W+S++     +G  N+ L    +       P  
Sbjct: 581 DTLGRAGCFDKIQKVIDEMPFEDDPIIWSSILHSCRIYG--NQDLATVAAEKLFTMVPTD 638

Query: 434 VTFLGILS 441
            T   ILS
Sbjct: 639 ATAYVILS 646



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 96/370 (25%), Positives = 151/370 (40%), Gaps = 56/370 (15%)

Query: 114 LIRNGELNEARKVFNSMPIKNVISW---NAMIAGYVECCMMGEAIVLFEEMEERNVVTWT 170
           L+ +G L  ARKV + +P K+ +     N ++ G    C +  A  LF     RN  TWT
Sbjct: 47  LVSSGRLAAARKVLDQVPEKSTLYLRFLNRILLGCSRSCDLSAAKALFSAAARRNAKTWT 106

Query: 171 SMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWN--GFHKESLLLFIEMKGICD 228
            M+      G   +   LFR M R+   S   +      N  G    +L   +   G   
Sbjct: 107 IMMRMLPADGRGSDAVSLFRDMLREGEASPDDVTITTVLNVPGCDVGTLHPVVTKLGF-- 164

Query: 229 NGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYL 288
                +V  CN++++ Y + G +  A+ +F  +P RD I++ +MI G    G+       
Sbjct: 165 ---GASVVVCNTLLDAYCKQGFIAAARRVFLEMPHRDSITYNAMIMGCSRQGR------- 214

Query: 289 FHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANI 348
            H                        EA  LF  MR  GV   + TFS L   A    ++
Sbjct: 215 -HG-----------------------EALELFAAMRREGVDTSHFTFSSLLTVATGMVDL 250

Query: 349 DLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGF 408
            LGRQIH + ++     ++ + N L+  Y+KC  + +   +F  M  RD VS+N M+   
Sbjct: 251 HLGRQIHGLFVRANPSCNVFVNNALLDFYSKCDSLGDLKQLFDEMSERDNVSYNVMISAC 310

Query: 409 SHHGLANETLKVFESMLESGTHPNSVTFLGILSACS-----------HAGLVSRGWEL-- 455
           S +      L++F  M   G    ++ +  +LS              HA L+  G  L  
Sbjct: 311 SWNRCGGMALQLFRDMQTLGFDRRTLPYASLLSVAGALPHIKIGRQIHAQLILHGLTLED 370

Query: 456 --FNAMFDVY 463
              NA+ D+Y
Sbjct: 371 FVGNALIDMY 380



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 57/207 (27%), Positives = 95/207 (45%), Gaps = 9/207 (4%)

Query: 242 INGYIRFGRLEEAQNLFDTVPVRDEISW---TSMIDGYLSVGQVSNAYYLFHNMPDRDAV 298
           +N  +  GRL  A+ + D VP +  +       ++ G      +S A  LF     R+A 
Sbjct: 44  LNYLVSSGRLAAARKVLDQVPEKSTLYLRFLNRILLGCSRSCDLSAAKALFSAAARRNAK 103

Query: 299 AWTAMISGLVQNELFVEATYLFMEMRAHG-VPPLNATFSVLFGAAGATANIDLGRQIHCV 357
            WT M+  L  +    +A  LF +M   G   P + T + +    G     D+G  +H V
Sbjct: 104 TWTIMMRMLPADGRGSDAVSLFRDMLREGEASPDDVTITTVLNVPGC----DVG-TLHPV 158

Query: 358 LMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANET 417
           + K    + +++ N L+  Y K G I  A  +F  M  RD +++N+M+MG S  G   E 
Sbjct: 159 VTKLGFGASVVVCNTLLDAYCKQGFIAAARRVFLEMPHRDSITYNAMIMGCSRQGRHGEA 218

Query: 418 LKVFESMLESGTHPNSVTFLGILSACS 444
           L++F +M   G   +  TF  +L+  +
Sbjct: 219 LELFAAMRREGVDTSHFTFSSLLTVAT 245


>gi|449441113|ref|XP_004138328.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Cucumis sativus]
          Length = 990

 Score =  276 bits (707), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 191/637 (29%), Positives = 315/637 (49%), Gaps = 61/637 (9%)

Query: 18  ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPER------ 71
           I  Y K GF+DEA  LF  MP++N++S+N+++ GF +NG   EA R F  + E       
Sbjct: 252 IALYGKCGFLDEAVELFDKMPEQNLISWNSLIRGFSENGFWLEAYRAFRSLLESGDGLIP 311

Query: 72  NVVSWTAM--IC---GLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKV 126
           +V +   +  +C   G  D G V     +   +    +V  N+++    + G L+EA  +
Sbjct: 312 DVATMVTLLPVCSGEGNVDVGMVIHGMAVKLGLVHELMVC-NALIDMYSKCGCLSEAAIL 370

Query: 127 FNSMPIKNVISWNAMIAGYVECCMMGEAIVLF------EEMEERNVVTWTSM-------- 172
           F  +  K+V+SWN+MI  Y     + E   L       EE+ E N VT  ++        
Sbjct: 371 FRKIENKSVVSWNSMIGAYSREGFVFETFDLLRKMWMEEELMEVNEVTILNLLPACLEES 430

Query: 173 ---------------------------ISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIG 205
                                      I+ Y + G +     +F  M  K+V SW A+IG
Sbjct: 431 ELLSLRALHGYSLRHSFQYKELINNAFIAAYAKCGSLVFAEHVFFGMNTKSVSSWNAVIG 490

Query: 206 GFAWNGFHKESLLLFIEMKGICDNGNNCNVQS----CNSMINGYIRFGRLEEAQNLFDTV 261
           G A NG   ++L  + EM  +    ++ ++ S    C  +  G +++G+      L + +
Sbjct: 491 GHAQNGDPIKALDFYFEMTRLGILPDDFSIVSLLLACGRL--GLLQYGKEIHGFVLRNGL 548

Query: 262 PVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFM 321
            +   ++  S++  Y    +       F  M D+++V W AM+SG  QNEL  EA  LF 
Sbjct: 549 EMNSFVA-VSLLSLYFHCSKPFYGRTYFETMGDKNSVCWNAMLSGYSQNELPNEALSLFR 607

Query: 322 EMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCG 381
           +M + G+ P     + + GA    + + LG+++HC  +K     D  +   L+ MYAK G
Sbjct: 608 QMLSDGLEPDEIAIASILGACSQLSALGLGKEVHCFALKNSLMEDNFVACSLMDMYAKSG 667

Query: 382 VIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILS 441
            + ++  IF+ +  +++ SWN M+ GF  HG  N+ +++FE M  S   P+  TFLG+L 
Sbjct: 668 FLGHSQRIFNRLNGKEVASWNVMITGFGVHGQGNKAVELFEDMKRSDKQPDRFTFLGVLQ 727

Query: 442 ACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDH 501
           AC HAGLVS G      M  +YK++P  EHY  +I++LGRAG++ EA  F+  +P EPD 
Sbjct: 728 ACCHAGLVSEGLNYLAQMQTLYKLEPELEHYACVIDMLGRAGRLNEALNFINEMPEEPDA 787

Query: 502 RIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMD 561
           +IW +LL +      + E+ E  A++LL L+   A ++++L N+YA +G+      +R  
Sbjct: 788 KIWSSLLSS-SITYVDLEMGEKFAEKLLALEANKADSYILLSNLYATAGKWDVVRMVRQK 846

Query: 562 MGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
           M    ++K  GCSW+   G +  F++G+       EI
Sbjct: 847 MKDLSLQKDVGCSWIELRGKVYSFIAGENSNPSSDEI 883



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 79/288 (27%), Positives = 135/288 (46%), Gaps = 12/288 (4%)

Query: 165 NVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMK 224
           + V  T +I+ Y   G   E   +F R+  KN+  W A++ G+  N  + E++  F+E+ 
Sbjct: 142 DFVLNTRLITMYSICGYPLESRLVFDRLLNKNLFQWNALVSGYVRNELYDEAIHTFLELI 201

Query: 225 GICDNGNN-----CNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSV 279
            + +   +     C +++C    +  I  G+      +     + D     +MI  Y   
Sbjct: 202 SVTEFQPDNFTFPCLIKACTGKCD--IHLGKSVHGMAV-KMGLIMDLFVGNAMIALYGKC 258

Query: 280 GQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEM--RAHGVPPLNATFSV 337
           G +  A  LF  MP+++ ++W ++I G  +N  ++EA   F  +     G+ P  AT   
Sbjct: 259 GFLDEAVELFDKMPEQNLISWNSLIRGFSENGFWLEAYRAFRSLLESGDGLIPDVATMVT 318

Query: 338 LFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRD 397
           L        N+D+G  IH + +K     +L++ N LI MY+KCG +  A  +F  + ++ 
Sbjct: 319 LLPVCSGEGNVDVGMVIHGMAVKLGLVHELMVCNALIDMYSKCGCLSEAAILFRKIENKS 378

Query: 398 LVSWNSMVMGFSHHGLANETLKVFESML--ESGTHPNSVTFLGILSAC 443
           +VSWNSM+  +S  G   ET  +   M   E     N VT L +L AC
Sbjct: 379 VVSWNSMIGAYSREGFVFETFDLLRKMWMEEELMEVNEVTILNLLPAC 426



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 64/186 (34%), Positives = 100/186 (53%), Gaps = 3/186 (1%)

Query: 270 TSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEM-RAHGV 328
           T +I  Y   G    +  +F  + +++   W A++SG V+NEL+ EA + F+E+      
Sbjct: 147 TRLITMYSICGYPLESRLVFDRLLNKNLFQWNALVSGYVRNELYDEAIHTFLELISVTEF 206

Query: 329 PPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYN 388
            P N TF  L  A     +I LG+ +H + +K     DL + N +I++Y KCG +D A  
Sbjct: 207 QPDNFTFPCLIKACTGKCDIHLGKSVHGMAVKMGLIMDLFVGNAMIALYGKCGFLDEAVE 266

Query: 389 IFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTH--PNSVTFLGILSACSHA 446
           +F  M  ++L+SWNS++ GFS +G   E  + F S+LESG    P+  T + +L  CS  
Sbjct: 267 LFDKMPEQNLISWNSLIRGFSENGFWLEAYRAFRSLLESGDGLIPDVATMVTLLPVCSGE 326

Query: 447 GLVSRG 452
           G V  G
Sbjct: 327 GNVDVG 332



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 104/436 (23%), Positives = 177/436 (40%), Gaps = 100/436 (22%)

Query: 77  TAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVF--------- 127
           T +I   +  G   E+R +F+ +  +N+  WN++V G +RN   +EA   F         
Sbjct: 147 TRLITMYSICGYPLESRLVFDRLLNKNLFQWNALVSGYVRNELYDEAIHTFLELISVTEF 206

Query: 128 --------------------------NSMPIK-----NVISWNAMIAGYVECCMMGEAIV 156
                                     + M +K     ++   NAMIA Y +C  + EA+ 
Sbjct: 207 QPDNFTFPCLIKACTGKCDIHLGKSVHGMAVKMGLIMDLFVGNAMIALYGKCGFLDEAVE 266

Query: 157 LFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKES 216
           LF++M E+N+++W S+I G+   G   E Y  FR +    + S   +I   A        
Sbjct: 267 LFDKMPEQNLISWNSLIRGFSENGFWLEAYRAFRSL----LESGDGLIPDVA-------- 314

Query: 217 LLLFIEMKGICDNGNNCNV-----------------QSCNSMINGYIRFGRLEEAQNLFD 259
               + +  +C    N +V                   CN++I+ Y + G L EA  LF 
Sbjct: 315 --TMVTLLPVCSGEGNVDVGMVIHGMAVKLGLVHELMVCNALIDMYSKCGCLSEAAILFR 372

Query: 260 TVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYL 319
            +  +  +SW SMI  Y   G V   + L   M       W       ++ EL       
Sbjct: 373 KIENKSVVSWNSMIGAYSREGFVFETFDLLRKM-------W-------MEEEL------- 411

Query: 320 FMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAK 379
              M  + V  LN     L  A    + +   R +H   ++   +   ++ N  I+ YAK
Sbjct: 412 ---MEVNEVTILN-----LLPACLEESELLSLRALHGYSLRHSFQYKELINNAFIAAYAK 463

Query: 380 CGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGI 439
           CG +  A ++F  M ++ + SWN+++ G + +G   + L  +  M   G  P+  + + +
Sbjct: 464 CGSLVFAEHVFFGMNTKSVSSWNAVIGGHAQNGDPIKALDFYFEMTRLGILPDDFSIVSL 523

Query: 440 LSACSHAGLVSRGWEL 455
           L AC   GL+  G E+
Sbjct: 524 LLACGRLGLLQYGKEI 539



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 92/405 (22%), Positives = 161/405 (39%), Gaps = 24/405 (5%)

Query: 11  VVHLTSSITKYSKRGFIDEAKALFQLM------PQRNVVSYNAMLSGFLQNGRLSEARRL 64
           VV   S I  YS+ GF+ E   L + M       + N V+   +L   L+   L   R L
Sbjct: 379 VVSWNSMIGAYSREGFVFETFDLLRKMWMEEELMEVNEVTILNLLPACLEESELLSLRAL 438

Query: 65  F-----EEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGE 119
                      + +++  A I   A  G +  A  +F  M  ++V SWN+++ G  +NG+
Sbjct: 439 HGYSLRHSFQYKELIN-NAFIAAYAKCGSLVFAEHVFFGMNTKSVSSWNAVIGGHAQNGD 497

Query: 120 LNEARKVFNSMPIKNVISWNAMIAGYVECC------MMGEAI--VLFEEMEERNVVTWTS 171
             +A   +  M    ++  +  I   +  C        G+ I   +     E N     S
Sbjct: 498 PIKALDFYFEMTRLGILPDDFSIVSLLLACGRLGLLQYGKEIHGFVLRNGLEMNSFVAVS 557

Query: 172 MISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGN 231
           ++S Y    +   G   F  M  KN V W AM+ G++ N    E+L LF +M       +
Sbjct: 558 LLSLYFHCSKPFYGRTYFETMGDKNSVCWNAMLSGYSQNELPNEALSLFRQMLSDGLEPD 617

Query: 232 NCNVQSCNSMINGYIRFGRLEEAQNL-FDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFH 290
              + S     +     G  +E          + D     S++D Y   G + ++  +F+
Sbjct: 618 EIAIASILGACSQLSALGLGKEVHCFALKNSLMEDNFVACSLMDMYAKSGFLGHSQRIFN 677

Query: 291 NMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDL 350
            +  ++  +W  MI+G   +    +A  LF +M+     P   TF  +  A      +  
Sbjct: 678 RLNGKEVASWNVMITGFGVHGQGNKAVELFEDMKRSDKQPDRFTFLGVLQACCHAGLVSE 737

Query: 351 GRQIHCVLMKTESESDLILEN--CLISMYAKCGVIDNAYNIFSNM 393
           G   +   M+T  + +  LE+  C+I M  + G ++ A N  + M
Sbjct: 738 GLN-YLAQMQTLYKLEPELEHYACVIDMLGRAGRLNEALNFINEM 781



 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 50/201 (24%), Positives = 98/201 (48%), Gaps = 18/201 (8%)

Query: 337 VLFGAAGATANIDLGRQIHCVL-MKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVS 395
           +L    G   N+++GR++  +L + ++   D +L   LI+MY+ CG    +  +F  +++
Sbjct: 112 MLLQKCGQYKNVEIGRKLDEMLCVSSQFSGDFVLNTRLITMYSICGYPLESRLVFDRLLN 171

Query: 396 RDLVSWNSMVMGFSHHGLANETLKVFESMLE-SGTHPNSVTFLGILSACS-----HAGLV 449
           ++L  WN++V G+  + L +E +  F  ++  +   P++ TF  ++ AC+     H G  
Sbjct: 172 KNLFQWNALVSGYVRNELYDEAIHTFLELISVTEFQPDNFTFPCLIKACTGKCDIHLGKS 231

Query: 450 SRGWEL-FNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALL 508
             G  +    + D++          +MI L G+ G + EA E   ++P E +   W +L+
Sbjct: 232 VHGMAVKMGLIMDLFVGN-------AMIALYGKCGFLDEAVELFDKMP-EQNLISWNSLI 283

Query: 509 GACGFCEGNAEIAEHAAKRLL 529
              GF E    +  + A R L
Sbjct: 284 R--GFSENGFWLEAYRAFRSL 302



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 36/127 (28%), Positives = 62/127 (48%), Gaps = 13/127 (10%)

Query: 16  SSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEM------P 69
           S +  Y+K GF+  ++ +F  +  + V S+N M++GF  +G+ ++A  LFE+M      P
Sbjct: 658 SLMDMYAKSGFLGHSQRIFNRLNGKEVASWNVMITGFGVHGQGNKAVELFEDMKRSDKQP 717

Query: 70  ERNVVSWTAMICGLADAGRVCEARKLFEEMP-----ERNVVSWNSMVVGLIRNGELNEAR 124
           +R   ++  ++     AG V E      +M      E  +  +  ++  L R G LNEA 
Sbjct: 718 DR--FTFLGVLQACCHAGLVSEGLNYLAQMQTLYKLEPELEHYACVIDMLGRAGRLNEAL 775

Query: 125 KVFNSMP 131
              N MP
Sbjct: 776 NFINEMP 782


>gi|449475532|ref|XP_004154482.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 642

 Score =  276 bits (707), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 165/492 (33%), Positives = 256/492 (52%), Gaps = 35/492 (7%)

Query: 119 ELNEARKVFNSMPIKNVISWNAMIAGYVEC---CMMGEAIVLFEEM-----EERNVVTWT 170
           +++ AR VF  MP  N   WN ++    E     +  EA++LF  M      + N  T+ 
Sbjct: 67  DIDYARAVFRQMPEPNCFCWNTILRILAETNDEHLQSEALMLFSAMLCDGRVKPNRFTFP 126

Query: 171 SMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLL--FIEMKGICD 228
           S++    RA  + EG  +              +I  F   GFH++  ++   + M  +C 
Sbjct: 127 SVLKACARASRLREGKQIH------------GLIVKF---GFHEDEFVISNLVRMYVMCA 171

Query: 229 NGNNCNVQSCNSMIN--GYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAY 286
              +     C ++++  G  +    +  Q+        + + W  MIDG + +G + +A 
Sbjct: 172 VMEDAYSLFCKNVVDFDGSCQMELDKRKQD-------GNVVLWNIMIDGQVRLGDIKSAK 224

Query: 287 YLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATA 346
            LF  MP R  V+W  MISG  QN  F+EA  LF EM++  + P   T   +  A     
Sbjct: 225 NLFDEMPPRSVVSWNVMISGYAQNGHFIEAINLFQEMQSSNIDPNYVTLVSVLPAIARIG 284

Query: 347 NIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVM 406
            ++LG+ IH    K + E D +L + L+ MY+KCG ID A  +F  +  R+ ++W++++ 
Sbjct: 285 ALELGKWIHLYAGKNKVEIDDVLGSALVDMYSKCGSIDKALQVFETLPKRNAITWSAIIG 344

Query: 407 GFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQ 466
            F+ HG A + +  F  M ++G  PN V ++GILSACSHAGLV  G   F+ M  V  +Q
Sbjct: 345 AFAMHGRAEDAIIHFHLMGKAGVTPNDVAYIGILSACSHAGLVEEGRSFFSHMVKVVGLQ 404

Query: 467 PGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAK 526
           P  EHY  M++LLGRAG ++EAEE +  +P EPD  IW ALLGAC     N ++ E  A+
Sbjct: 405 PRIEHYGCMVDLLGRAGHLEEAEELIRNMPIEPDDVIWKALLGACKM-HKNLKMGERVAE 463

Query: 527 RLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFL 586
            L+EL P ++ ++V L N+YA+ G      ++R+ M    +RK PGCSW+  +G I  FL
Sbjct: 464 TLMELAPHDSGSYVALSNLYASLGNWEAVARVRLKMKGMDIRKDPGCSWIEIHGIIHEFL 523

Query: 587 SGDKIPAQVAEI 598
             D   ++  EI
Sbjct: 524 VEDDSHSKAKEI 535



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 96/405 (23%), Positives = 170/405 (41%), Gaps = 70/405 (17%)

Query: 92  ARKLFEEMPERNVVSWNSMVVGLIRNGE---LNEARKVFNSMPIKNVISWNA-------- 140
           AR +F +MPE N   WN+++  L    +    +EA  +F++M     +  N         
Sbjct: 71  ARAVFRQMPEPNCFCWNTILRILAETNDEHLQSEALMLFSAMLCDGRVKPNRFTFPSVLK 130

Query: 141 --------------------------------MIAGYVECCMMGEAIVLF---------- 158
                                           ++  YV C +M +A  LF          
Sbjct: 131 ACARASRLREGKQIHGLIVKFGFHEDEFVISNLVRMYVMCAVMEDAYSLFCKNVVDFDGS 190

Query: 159 --EEMEER----NVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGF 212
              E+++R    NVV W  MI G  R G+++    LF  MP ++VVSW  MI G+A NG 
Sbjct: 191 CQMELDKRKQDGNVVLWNIMIDGQVRLGDIKSAKNLFDEMPPRSVVSWNVMISGYAQNGH 250

Query: 213 HKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQ--NLF---DTVPVRDEI 267
             E++ LF EM+    +  + N  +  S++    R G LE  +  +L+   + V + D++
Sbjct: 251 FIEAINLFQEMQS---SNIDPNYVTLVSVLPAIARIGALELGKWIHLYAGKNKVEI-DDV 306

Query: 268 SWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHG 327
             ++++D Y   G +  A  +F  +P R+A+ W+A+I     +    +A   F  M   G
Sbjct: 307 LGSALVDMYSKCGSIDKALQVFETLPKRNAITWSAIIGAFAMHGRAEDAIIHFHLMGKAG 366

Query: 328 VPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILE-NCLISMYAKCGVIDNA 386
           V P +  +  +  A      ++ GR     ++K       I    C++ +  + G ++ A
Sbjct: 367 VTPNDVAYIGILSACSHAGLVEEGRSFFSHMVKVVGLQPRIEHYGCMVDLLGRAGHLEEA 426

Query: 387 YNIFSNM-VSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTH 430
             +  NM +  D V W +++     H       +V E+++E   H
Sbjct: 427 EELIRNMPIEPDDVIWKALLGACKMHKNLKMGERVAETLMELAPH 471



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 71/247 (28%), Positives = 126/247 (51%), Gaps = 17/247 (6%)

Query: 41  NVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMP 100
           NVV +N M+ G ++ G +  A+ LF+EMP R+VVSW  MI G A  G   EA  LF+EM 
Sbjct: 203 NVVLWNIMIDGQVRLGDIKSAKNLFDEMPPRSVVSWNVMISGYAQNGHFIEAINLFQEMQ 262

Query: 101 ERNV----VSWNSMVVGLIRNGELNEARKVF-----NSMPIKNVISWNAMIAGYVECCMM 151
             N+    V+  S++  + R G L   + +      N + I +V+  +A++  Y +C  +
Sbjct: 263 SSNIDPNYVTLVSVLPAIARIGALELGKWIHLYAGKNKVEIDDVLG-SALVDMYSKCGSI 321

Query: 152 GEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNV----VSWTAMIGGF 207
            +A+ +FE + +RN +TW+++I  +   G  E+    F  M +  V    V++  ++   
Sbjct: 322 DKALQVFETLPKRNAITWSAIIGAFAMHGRAEDAIIHFHLMGKAGVTPNDVAYIGILSAC 381

Query: 208 AWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVR-DE 266
           +  G  +E    F  M  +   G    ++    M++   R G LEEA+ L   +P+  D+
Sbjct: 382 SHAGLVEEGRSFFSHMVKVV--GLQPRIEHYGCMVDLLGRAGHLEEAEELIRNMPIEPDD 439

Query: 267 ISWTSMI 273
           + W +++
Sbjct: 440 VIWKALL 446



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 92/388 (23%), Positives = 161/388 (41%), Gaps = 108/388 (27%)

Query: 21  YSKRGFIDEAKALFQLMPQRNVVSYNAML-------------------SGFLQNGRLSEA 61
           +S R  ID A+A+F+ MP+ N   +N +L                   S  L +GR+   
Sbjct: 63  FSSRD-IDYARAVFRQMPEPNCFCWNTILRILAETNDEHLQSEALMLFSAMLCDGRVKPN 121

Query: 62  RRLF------------------------------EEMPERNVVSWTAMICGLADAGRV-C 90
           R  F                              +E    N+V    M   + DA  + C
Sbjct: 122 RFTFPSVLKACARASRLREGKQIHGLIVKFGFHEDEFVISNLVRMYVMCAVMEDAYSLFC 181

Query: 91  EARKLFE-----EMPER----NVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAM 141
           +    F+     E+ +R    NVV WN M+ G +R G++  A+ +F+ MP ++V+SWN M
Sbjct: 182 KNVVDFDGSCQMELDKRKQDGNVVLWNIMIDGQVRLGDIKSAKNLFDEMPPRSVVSWNVM 241

Query: 142 IAGYVECCMMGEAIVLFEEMEERNV----------------------------------- 166
           I+GY +     EAI LF+EM+  N+                                   
Sbjct: 242 ISGYAQNGHFIEAINLFQEMQSSNIDPNYVTLVSVLPAIARIGALELGKWIHLYAGKNKV 301

Query: 167 ----VTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIE 222
               V  ++++  Y + G +++   +F  +P++N ++W+A+IG FA +G  +++++ F  
Sbjct: 302 EIDDVLGSALVDMYSKCGSIDKALQVFETLPKRNAITWSAIIGAFAMHGRAEDAIIHFHL 361

Query: 223 MKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFD----TVPVRDEIS-WTSMIDGYL 277
           M      G   N  +   +++     G +EE ++ F      V ++  I  +  M+D   
Sbjct: 362 MG---KAGVTPNDVAYIGILSACSHAGLVEEGRSFFSHMVKVVGLQPRIEHYGCMVDLLG 418

Query: 278 SVGQVSNAYYLFHNMP-DRDAVAWTAMI 304
             G +  A  L  NMP + D V W A++
Sbjct: 419 RAGHLEEAEELIRNMPIEPDDVIWKALL 446



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 81/159 (50%), Gaps = 14/159 (8%)

Query: 15  TSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNV- 73
           ++ +  YSK G ID+A  +F+ +P+RN ++++A++  F  +GR  +A   F  M +  V 
Sbjct: 309 SALVDMYSKCGSIDKALQVFETLPKRNAITWSAIIGAFAMHGRAEDAIIHFHLMGKAGVT 368

Query: 74  ---VSWTAMICGLADAGRVCEARKLFEEMP-----ERNVVSWNSMVVGLIRNGELNEARK 125
              V++  ++   + AG V E R  F  M      +  +  +  MV  L R G L EA +
Sbjct: 369 PNDVAYIGILSACSHAGLVEEGRSFFSHMVKVVGLQPRIEHYGCMVDLLGRAGHLEEAEE 428

Query: 126 VFNSMPIK-NVISWNAMIAGYVECCMMGEAIVLFEEMEE 163
           +  +MPI+ + + W A++      C M + + + E + E
Sbjct: 429 LIRNMPIEPDDVIWKALLGA----CKMHKNLKMGERVAE 463


>gi|147771902|emb|CAN75707.1| hypothetical protein VITISV_031420 [Vitis vinifera]
          Length = 708

 Score =  276 bits (707), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 162/505 (32%), Positives = 270/505 (53%), Gaps = 33/505 (6%)

Query: 91  EARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPI----KNVISWNAMIAGYV 146
           E RK+F+ +  ++V+SW SM+ G +R G+   + ++F  M       N  + +A+I    
Sbjct: 172 ETRKVFDGLFVKDVISWTSMISGYVRVGKPMNSLELFWKMLAYGVEPNAFTLSAVIKA-- 229

Query: 147 ECCMMGE--------AIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVV 198
            C  +G+         +VL    +  N V  +++I  + R   +++   LF  +   + +
Sbjct: 230 -CSELGDLKLGRIFHGVVLGRGFDS-NYVIASALIDMHGRNCALDDARQLFDELLEPDAI 287

Query: 199 SWTAMIGGFAWNGFHKESLLLFIEMK---GICDNGNNCNVQSCNSMINGYIRFGRLEEAQ 255
            WT++I     N F  E+L  F  M+   G+C +G      +  +++      GRL++ +
Sbjct: 288 CWTSIISALTRNDFFDEALRFFYSMQRDHGMCPDGF-----TFGTVLTACGNLGRLKQGK 342

Query: 256 NLFDTVPVR----DEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNE 311
            +   V       + +  +S++D Y   G V  +  +F  MP +++V+W+A++ G  QN 
Sbjct: 343 EVHAKVITTGFCGNVVVESSLVDMYGKCGSVGESQRIFDRMPIKNSVSWSALLGGYCQNG 402

Query: 312 LFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILEN 371
            F     +F +M    +      F  +       A +  G+++HC  ++     D+I+E+
Sbjct: 403 DFKSVIQIFRKMEKVDL----YCFGTILRTCAGLAAVRQGKEVHCQYIRKGGWRDVIVES 458

Query: 372 CLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHP 431
            L+ +YAKCG I+ A  IF  M  R+L++WNSM+ GF+ +G   E L++F  M++ G  P
Sbjct: 459 ALVDLYAKCGCIEYAQTIFDQMPVRNLITWNSMIGGFAQNGRGEEALRIFNQMVKEGIKP 518

Query: 432 NSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEF 491
           + ++F+GIL ACSH GLV  G E F +M   Y I+ G EHY  M++LLGRAG ++EAE  
Sbjct: 519 DYISFIGILFACSHRGLVDEGREYFISMTKDYGIKVGIEHYSCMVDLLGRAGLLEEAEIL 578

Query: 492 VLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGR 551
           +    F  D  +W ALLGAC  C  N EIAE  AKR++EL+P    ++V+L N+Y A GR
Sbjct: 579 IETSDFRDDSSLWAALLGACTTCT-NYEIAERIAKRVMELEPDYHLSYVLLANVYKAVGR 637

Query: 552 HVEEHKLRMDMGLKGVRKVPGCSWL 576
             +  ++R  M  +GV K+PG SW+
Sbjct: 638 WNDALRIRRLMKDRGVNKMPGKSWI 662



 Score =  102 bits (254), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 76/327 (23%), Positives = 146/327 (44%), Gaps = 82/327 (25%)

Query: 27  IDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEM-------PERNVVSWTAM 79
           +D+A+ LF  + + + + + +++S   +N    EA R F  M       P+         
Sbjct: 271 LDDARQLFDELLEPDAICWTSIISALTRNDFFDEALRFFYSMQRDHGMCPDGFTFGTVLT 330

Query: 80  ICGLADAGRVCEARKLFEEMPER----NVVSWNSMVVGLIRNGELNEARKVFNSMPIKNV 135
            CG  + GR+ + +++  ++       NVV  +S+V    + G + E++++F+ MPIKN 
Sbjct: 331 ACG--NLGRLKQGKEVHAKVITTGFCGNVVVESSLVDMYGKCGSVGESQRIFDRMPIKNS 388

Query: 136 ISWNAMIAGYVECCMMGEAIVLFEEMEE-------------------------------- 163
           +SW+A++ GY +       I +F +ME+                                
Sbjct: 389 VSWSALLGGYCQNGDFKSVIQIFRKMEKVDLYCFGTILRTCAGLAAVRQGKEVHCQYIRK 448

Query: 164 ---RNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLF 220
              R+V+  ++++  Y + G +E    +F +MP +N+++W +MIGGFA NG  +E+L +F
Sbjct: 449 GGWRDVIVESALVDLYAKCGCIEYAQTIFDQMPVRNLITWNSMIGGFAQNGRGEEALRIF 508

Query: 221 IEM---------------------KGICDNGN------------NCNVQSCNSMINGYIR 247
            +M                     +G+ D G                ++  + M++   R
Sbjct: 509 NQMVKEGIKPDYISFIGILFACSHRGLVDEGREYFISMTKDYGIKVGIEHYSCMVDLLGR 568

Query: 248 FGRLEEAQNLFDTVPVRDEIS-WTSMI 273
            G LEEA+ L +T   RD+ S W +++
Sbjct: 569 AGLLEEAEILIETSDFRDDSSLWAALL 595



 Score = 79.0 bits (193), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 60/240 (25%), Positives = 106/240 (44%), Gaps = 45/240 (18%)

Query: 11  VVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPE 70
           VV  +S +  Y K G + E++ +F  MP +N VS++A+L G+ QNG      ++F +M +
Sbjct: 357 VVVESSLVDMYGKCGSVGESQRIFDRMPIKNSVSWSALLGGYCQNGDFKSVIQIFRKMEK 416

Query: 71  -----------------------------------RNVVSWTAMICGLADAGRVCEARKL 95
                                              R+V+  +A++   A  G +  A+ +
Sbjct: 417 VDLYCFGTILRTCAGLAAVRQGKEVHCQYIRKGGWRDVIVESALVDLYAKCGCIEYAQTI 476

Query: 96  FEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECC----MM 151
           F++MP RN+++WNSM+ G  +NG   EA ++FN M  + +        G +  C    ++
Sbjct: 477 FDQMPVRNLITWNSMIGGFAQNGRGEEALRIFNQMVKEGIKPDYISFIGILFACSHRGLV 536

Query: 152 GEAIVLFEEMEER-----NVVTWTSMISGYCRAGEVEEGYCLFRRMP-RKNVVSWTAMIG 205
            E    F  M +       +  ++ M+    RAG +EE   L      R +   W A++G
Sbjct: 537 DEGREYFISMTKDYGIKVGIEHYSCMVDLLGRAGLLEEAEILIETSDFRDDSSLWAALLG 596



 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 43/148 (29%), Positives = 77/148 (52%), Gaps = 10/148 (6%)

Query: 11  VVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPE 70
           V+  ++ +  Y+K G I+ A+ +F  MP RN++++N+M+ GF QNGR  EA R+F +M +
Sbjct: 454 VIVESALVDLYAKCGCIEYAQTIFDQMPVRNLITWNSMIGGFAQNGRGEEALRIFNQMVK 513

Query: 71  RNV----VSWTAMICGLADAGRVCEARKLFEEMPER-----NVVSWNSMVVGLIRNGELN 121
             +    +S+  ++   +  G V E R+ F  M +       +  ++ MV  L R G L 
Sbjct: 514 EGIKPDYISFIGILFACSHRGLVDEGREYFISMTKDYGIKVGIEHYSCMVDLLGRAGLLE 573

Query: 122 EARKVFNSMPIKNVIS-WNAMIAGYVEC 148
           EA  +  +   ++  S W A++     C
Sbjct: 574 EAEILIETSDFRDDSSLWAALLGACTTC 601



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/147 (25%), Positives = 76/147 (51%), Gaps = 9/147 (6%)

Query: 40  RNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEM 99
           R+V+  +A++  + + G +  A+ +F++MP RN+++W +MI G A  GR  EA ++F +M
Sbjct: 452 RDVIVESALVDLYAKCGCIEYAQTIFDQMPVRNLITWNSMIGGFAQNGRGEEALRIFNQM 511

Query: 100 PERNV----VSWNSMVVGLIRNGELNEARKVFNSMPIKNVIS-----WNAMIAGYVECCM 150
            +  +    +S+  ++      G ++E R+ F SM     I      ++ M+       +
Sbjct: 512 VKEGIKPDYISFIGILFACSHRGLVDEGREYFISMTKDYGIKVGIEHYSCMVDLLGRAGL 571

Query: 151 MGEAIVLFEEMEERNVVTWTSMISGYC 177
           + EA +L E  + R+  +  + + G C
Sbjct: 572 LEEAEILIETSDFRDDSSLWAALLGAC 598


>gi|449443909|ref|XP_004139718.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 642

 Score =  276 bits (707), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 165/492 (33%), Positives = 256/492 (52%), Gaps = 35/492 (7%)

Query: 119 ELNEARKVFNSMPIKNVISWNAMIAGYVEC---CMMGEAIVLFEEM-----EERNVVTWT 170
           +++ AR VF  MP  N   WN ++    E     +  EA++LF  M      + N  T+ 
Sbjct: 67  DIDYARAVFRQMPEPNCFCWNTILRVLAETNDEHLQSEALMLFSAMLCDGRVKPNRFTFP 126

Query: 171 SMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLL--FIEMKGICD 228
           S++    RA  + EG  +              +I  F   GFH++  ++   + M  +C 
Sbjct: 127 SVLKACARASRLREGKQIH------------GLIVKF---GFHEDEFVISNLVRMYVMCA 171

Query: 229 NGNNCNVQSCNSMIN--GYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAY 286
              +     C ++++  G  +    +  Q+        + + W  MIDG + +G + +A 
Sbjct: 172 VMEDAYSLFCKNVVDFDGSCQMELDKRKQD-------GNVVLWNIMIDGQVRLGDIKSAK 224

Query: 287 YLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATA 346
            LF  MP R  V+W  MISG  QN  F+EA  LF EM++  + P   T   +  A     
Sbjct: 225 NLFDEMPQRSVVSWNVMISGYAQNGHFIEAINLFQEMQSSNIDPNYVTLVSVLPAIARIG 284

Query: 347 NIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVM 406
            ++LG+ IH    K + E D +L + L+ MY+KCG ID A  +F  +  R+ ++W++++ 
Sbjct: 285 ALELGKWIHLYAGKNKIEIDDVLGSALVDMYSKCGSIDEALQVFETLPKRNAITWSAIIG 344

Query: 407 GFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQ 466
            F+ HG A + +  F  M ++G  PN V ++GILSACSHAGLV  G   F+ M  V  +Q
Sbjct: 345 AFAMHGRAEDAIIHFHLMGKAGVTPNDVAYIGILSACSHAGLVEEGRSFFSHMVKVVGLQ 404

Query: 467 PGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAK 526
           P  EHY  M++LLGRAG ++EAEE +  +P EPD  IW ALLGAC     N ++ E  A+
Sbjct: 405 PRIEHYGCMVDLLGRAGHLEEAEELIRNMPIEPDDVIWKALLGACKM-HKNLKMGERVAE 463

Query: 527 RLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFL 586
            L+EL P ++ ++V L N+YA+ G      ++R+ M    +RK PGCSW+  +G I  FL
Sbjct: 464 TLMELAPHDSGSYVALSNLYASLGNWEAVARVRLKMKGMDIRKDPGCSWIEIHGIIHEFL 523

Query: 587 SGDKIPAQVAEI 598
             D   ++  EI
Sbjct: 524 VEDDSHSKAKEI 535



 Score =  122 bits (307), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 105/407 (25%), Positives = 183/407 (44%), Gaps = 43/407 (10%)

Query: 61  ARRLFEEMPERNVVSWTAMICGLA---DAGRVCEARKLFEEM-----PERNVVSWNSMVV 112
           AR +F +MPE N   W  ++  LA   D     EA  LF  M      + N  ++ S++ 
Sbjct: 71  ARAVFRQMPEPNCFCWNTILRVLAETNDEHLQSEALMLFSAMLCDGRVKPNRFTFPSVLK 130

Query: 113 GLIRNGELNEARKV------FNSMPIKNVISWNAMIAGYVECCMMGEAIVLF-------- 158
              R   L E +++      F     + VIS   ++  YV C +M +A  LF        
Sbjct: 131 ACARASRLREGKQIHGLIVKFGFHEDEFVIS--NLVRMYVMCAVMEDAYSLFCKNVVDFD 188

Query: 159 ----EEMEER----NVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWN 210
                E+++R    NVV W  MI G  R G+++    LF  MP+++VVSW  MI G+A N
Sbjct: 189 GSCQMELDKRKQDGNVVLWNIMIDGQVRLGDIKSAKNLFDEMPQRSVVSWNVMISGYAQN 248

Query: 211 GFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQ--NLF---DTVPVRD 265
           G   E++ LF EM+    +  + N  +  S++    R G LE  +  +L+   + + + D
Sbjct: 249 GHFIEAINLFQEMQS---SNIDPNYVTLVSVLPAIARIGALELGKWIHLYAGKNKIEI-D 304

Query: 266 EISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRA 325
           ++  ++++D Y   G +  A  +F  +P R+A+ W+A+I     +    +A   F  M  
Sbjct: 305 DVLGSALVDMYSKCGSIDEALQVFETLPKRNAITWSAIIGAFAMHGRAEDAIIHFHLMGK 364

Query: 326 HGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILE-NCLISMYAKCGVID 384
            GV P +  +  +  A      ++ GR     ++K       I    C++ +  + G ++
Sbjct: 365 AGVTPNDVAYIGILSACSHAGLVEEGRSFFSHMVKVVGLQPRIEHYGCMVDLLGRAGHLE 424

Query: 385 NAYNIFSNM-VSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTH 430
            A  +  NM +  D V W +++     H       +V E+++E   H
Sbjct: 425 EAEELIRNMPIEPDDVIWKALLGACKMHKNLKMGERVAETLMELAPH 471



 Score =  112 bits (279), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 72/247 (29%), Positives = 127/247 (51%), Gaps = 17/247 (6%)

Query: 41  NVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMP 100
           NVV +N M+ G ++ G +  A+ LF+EMP+R+VVSW  MI G A  G   EA  LF+EM 
Sbjct: 203 NVVLWNIMIDGQVRLGDIKSAKNLFDEMPQRSVVSWNVMISGYAQNGHFIEAINLFQEMQ 262

Query: 101 ERNV----VSWNSMVVGLIRNGELNEARKVF-----NSMPIKNVISWNAMIAGYVECCMM 151
             N+    V+  S++  + R G L   + +      N + I +V+  +A++  Y +C  +
Sbjct: 263 SSNIDPNYVTLVSVLPAIARIGALELGKWIHLYAGKNKIEIDDVLG-SALVDMYSKCGSI 321

Query: 152 GEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNV----VSWTAMIGGF 207
            EA+ +FE + +RN +TW+++I  +   G  E+    F  M +  V    V++  ++   
Sbjct: 322 DEALQVFETLPKRNAITWSAIIGAFAMHGRAEDAIIHFHLMGKAGVTPNDVAYIGILSAC 381

Query: 208 AWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVR-DE 266
           +  G  +E    F  M  +   G    ++    M++   R G LEEA+ L   +P+  D+
Sbjct: 382 SHAGLVEEGRSFFSHMVKVV--GLQPRIEHYGCMVDLLGRAGHLEEAEELIRNMPIEPDD 439

Query: 267 ISWTSMI 273
           + W +++
Sbjct: 440 VIWKALL 446



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 93/388 (23%), Positives = 161/388 (41%), Gaps = 108/388 (27%)

Query: 21  YSKRGFIDEAKALFQLMPQRNVVSYNAML-------------------SGFLQNGRLSEA 61
           +S R  ID A+A+F+ MP+ N   +N +L                   S  L +GR+   
Sbjct: 63  FSSRD-IDYARAVFRQMPEPNCFCWNTILRVLAETNDEHLQSEALMLFSAMLCDGRVKPN 121

Query: 62  RRLF------------------------------EEMPERNVVSWTAMICGLADAGRV-C 90
           R  F                              +E    N+V    M   + DA  + C
Sbjct: 122 RFTFPSVLKACARASRLREGKQIHGLIVKFGFHEDEFVISNLVRMYVMCAVMEDAYSLFC 181

Query: 91  EARKLFE-----EMPER----NVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAM 141
           +    F+     E+ +R    NVV WN M+ G +R G++  A+ +F+ MP ++V+SWN M
Sbjct: 182 KNVVDFDGSCQMELDKRKQDGNVVLWNIMIDGQVRLGDIKSAKNLFDEMPQRSVVSWNVM 241

Query: 142 IAGYVECCMMGEAIVLFEEMEERNV----------------------------------- 166
           I+GY +     EAI LF+EM+  N+                                   
Sbjct: 242 ISGYAQNGHFIEAINLFQEMQSSNIDPNYVTLVSVLPAIARIGALELGKWIHLYAGKNKI 301

Query: 167 ----VTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIE 222
               V  ++++  Y + G ++E   +F  +P++N ++W+A+IG FA +G  +++++ F  
Sbjct: 302 EIDDVLGSALVDMYSKCGSIDEALQVFETLPKRNAITWSAIIGAFAMHGRAEDAIIHFHL 361

Query: 223 MKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFD----TVPVRDEIS-WTSMIDGYL 277
           M      G   N  +   +++     G +EE ++ F      V ++  I  +  M+D   
Sbjct: 362 MG---KAGVTPNDVAYIGILSACSHAGLVEEGRSFFSHMVKVVGLQPRIEHYGCMVDLLG 418

Query: 278 SVGQVSNAYYLFHNMP-DRDAVAWTAMI 304
             G +  A  L  NMP + D V W A++
Sbjct: 419 RAGHLEEAEELIRNMPIEPDDVIWKALL 446



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 81/159 (50%), Gaps = 14/159 (8%)

Query: 15  TSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNV- 73
           ++ +  YSK G IDEA  +F+ +P+RN ++++A++  F  +GR  +A   F  M +  V 
Sbjct: 309 SALVDMYSKCGSIDEALQVFETLPKRNAITWSAIIGAFAMHGRAEDAIIHFHLMGKAGVT 368

Query: 74  ---VSWTAMICGLADAGRVCEARKLFEEMP-----ERNVVSWNSMVVGLIRNGELNEARK 125
              V++  ++   + AG V E R  F  M      +  +  +  MV  L R G L EA +
Sbjct: 369 PNDVAYIGILSACSHAGLVEEGRSFFSHMVKVVGLQPRIEHYGCMVDLLGRAGHLEEAEE 428

Query: 126 VFNSMPIK-NVISWNAMIAGYVECCMMGEAIVLFEEMEE 163
           +  +MPI+ + + W A++      C M + + + E + E
Sbjct: 429 LIRNMPIEPDDVIWKALLGA----CKMHKNLKMGERVAE 463


>gi|15233590|ref|NP_193861.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207660|sp|Q9STE1.1|PP333_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g21300
 gi|3402749|emb|CAA20195.1| putative protein [Arabidopsis thaliana]
 gi|7268926|emb|CAB79129.1| putative protein [Arabidopsis thaliana]
 gi|332659037|gb|AEE84437.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 857

 Score =  276 bits (706), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 192/630 (30%), Positives = 311/630 (49%), Gaps = 62/630 (9%)

Query: 15  TSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVV 74
           +S I  Y + G ID    LF  + Q++ V +N ML+G+ + G L    + F  M   + +
Sbjct: 177 SSLIKAYLEYGKIDVPSKLFDRVLQKDCVIWNVMLNGYAKCGALDSVIKGFSVM-RMDQI 235

Query: 75  SWTAMI--CGLADAGRVCEARKLFE---EMPERNVVSW--------NSMVVGLIRNGELN 121
           S  A+   C L+    VC ++ L +   ++    VVS         NS++    + G  +
Sbjct: 236 SPNAVTFDCVLS----VCASKLLIDLGVQLHGLVVVSGVDFEGSIKNSLLSMYSKCGRFD 291

Query: 122 EARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNV----VTWTSM----- 172
           +A K+F  M   + ++WN MI+GYV+  +M E++  F EM    V    +T++S+     
Sbjct: 292 DASKLFRMMSRADTVTWNCMISGYVQSGLMEESLTFFYEMISSGVLPDAITFSSLLPSVS 351

Query: 173 ------------------------------ISGYCRAGEVEEGYCLFRRMPRKNVVSWTA 202
                                         I  Y +   V     +F +    +VV +TA
Sbjct: 352 KFENLEYCKQIHCYIMRHSISLDIFLTSALIDAYFKCRGVSMAQNIFSQCNSVDVVVFTA 411

Query: 203 MIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYI--RFGRLEEAQNLFDT 260
           MI G+  NG + +SL +F  +  +  + N   + S   +I   +  + GR      +   
Sbjct: 412 MISGYLHNGLYIDSLEMFRWLVKVKISPNEITLVSILPVIGILLALKLGRELHGFIIKKG 471

Query: 261 VPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLF 320
              R  I   ++ID Y   G+++ AY +F  +  RD V+W +MI+   Q++    A  +F
Sbjct: 472 FDNRCNIG-CAVIDMYAKCGRMNLAYEIFERLSKRDIVSWNSMITRCAQSDNPSAAIDIF 530

Query: 321 MEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKC 380
            +M   G+     + S    A     +   G+ IH  ++K    SD+  E+ LI MYAKC
Sbjct: 531 RQMGVSGICYDCVSISAALSACANLPSESFGKAIHGFMIKHSLASDVYSESTLIDMYAKC 590

Query: 381 GVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLE-SGTHPNSVTFLGI 439
           G +  A N+F  M  +++VSWNS++    +HG   ++L +F  M+E SG  P+ +TFL I
Sbjct: 591 GNLKAAMNVFKTMKEKNIVSWNSIIAACGNHGKLKDSLCLFHEMVEKSGIRPDQITFLEI 650

Query: 440 LSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEP 499
           +S+C H G V  G   F +M + Y IQP  EHY  +++L GRAG++ EA E V  +PF P
Sbjct: 651 ISSCCHVGDVDEGVRFFRSMTEDYGIQPQQEHYACVVDLFGRAGRLTEAYETVKSMPFPP 710

Query: 500 DHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLR 559
           D  +WG LLGAC     N E+AE A+ +L++LDP N+  +V++ N +A +       K+R
Sbjct: 711 DAGVWGTLLGACRL-HKNVELAEVASSKLMDLDPSNSGYYVLISNAHANAREWESVTKVR 769

Query: 560 MDMGLKGVRKVPGCSWLMRNGGIQMFLSGD 589
             M  + V+K+PG SW+  N    +F+SGD
Sbjct: 770 SLMKEREVQKIPGYSWIEINKRTHLFVSGD 799



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 121/465 (26%), Positives = 205/465 (44%), Gaps = 33/465 (7%)

Query: 66  EEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPER--NVVSWNSMVVGLIRNGELNEA 123
           +   +  ++   AM    +D G      K+F  +  R  ++  WNS++   +RNG LN+A
Sbjct: 69  DSYTDERILGMYAMCGSFSDCG------KMFYRLDLRRSSIRPWNSIISSFVRNGLLNQA 122

Query: 124 RKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEER--------NVVTWTSMISG 175
              +  M    V    +     V+ C+  +     + + +         N    +S+I  
Sbjct: 123 LAFYFKMLCFGVSPDVSTFPCLVKACVALKNFKGIDFLSDTVSSLGMDCNEFVASSLIKA 182

Query: 176 YCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLF--IEMKGICDNGN-- 231
           Y   G+++    LF R+ +K+ V W  M+ G+A  G     +  F  + M  I  N    
Sbjct: 183 YLEYGKIDVPSKLFDRVLQKDCVIWNVMLNGYAKCGALDSVIKGFSVMRMDQISPNAVTF 242

Query: 232 NCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHN 291
           +C +  C S +   I  G       +   V     I   S++  Y   G+  +A  LF  
Sbjct: 243 DCVLSVCASKL--LIDLGVQLHGLVVVSGVDFEGSIK-NSLLSMYSKCGRFDDASKLFRM 299

Query: 292 MPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLG 351
           M   D V W  MISG VQ+ L  E+   F EM + GV P   TFS L  +     N++  
Sbjct: 300 MSRADTVTWNCMISGYVQSGLMEESLTFFYEMISSGVLPDAITFSSLLPSVSKFENLEYC 359

Query: 352 RQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHH 411
           +QIHC +M+     D+ L + LI  Y KC  +  A NIFS   S D+V + +M+ G+ H+
Sbjct: 360 KQIHCYIMRHSISLDIFLTSALIDAYFKCRGVSMAQNIFSQCNSVDVVVFTAMISGYLHN 419

Query: 412 GLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEH 471
           GL  ++L++F  +++    PN +T + IL        +  G EL       + I+ G ++
Sbjct: 420 GLYIDSLEMFRWLVKVKISPNEITLVSILPVIGILLALKLGRELHG-----FIIKKGFDN 474

Query: 472 Y----VSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACG 512
                 ++I++  + G++  A E   RL  + D   W +++  C 
Sbjct: 475 RCNIGCAVIDMYAKCGRMNLAYEIFERLS-KRDIVSWNSMITRCA 518



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 54/234 (23%), Positives = 97/234 (41%), Gaps = 14/234 (5%)

Query: 335 FSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMV 394
            S+L  A      +  G+Q+H  L+      D   +  ++ MYA CG   +   +F  + 
Sbjct: 38  LSLLLQACSNPNLLRQGKQVHAFLIVNSISGDSYTDERILGMYAMCGSFSDCGKMFYRLD 97

Query: 395 SR--DLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRG 452
            R   +  WNS++  F  +GL N+ L  +  ML  G  P+  TF  ++ AC  A    +G
Sbjct: 98  LRRSSIRPWNSIISSFVRNGLLNQALAFYFKMLCFGVSPDVSTFPCLVKACV-ALKNFKG 156

Query: 453 WELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACG 512
            +  +       +        S+I      GKI    +   R+  + D  IW  +L    
Sbjct: 157 IDFLSDTVSSLGMDCNEFVASSLIKAYLEYGKIDVPSKLFDRV-LQKDCVIWNVMLNGYA 215

Query: 513 FCEG-NAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLK 565
            C   ++ I   +  R+ ++ P NA     + ++ A+        KL +D+G++
Sbjct: 216 KCGALDSVIKGFSVMRMDQISP-NAVTFDCVLSVCAS--------KLLIDLGVQ 260


>gi|357118962|ref|XP_003561216.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Brachypodium distachyon]
          Length = 900

 Score =  276 bits (706), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 167/522 (31%), Positives = 262/522 (50%), Gaps = 50/522 (9%)

Query: 122 EARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERN---------------- 165
           +AR+VF+ MP ++ ++WNA++AGY    +   A+ +   M+E +                
Sbjct: 278 DARRVFDRMPARDRVAWNALVAGYARNGLAEAAVGMVVRMQEEDGERPDAVTLVSVLPAC 337

Query: 166 ------------------------VVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWT 201
                                   V   T+++  YC+ G V+    +F  M  +N VSW 
Sbjct: 338 ADAQALGACREVHAFAVRGGFDEQVNVSTAILDVYCKCGAVDSARKVFDGMQDRNSVSWN 397

Query: 202 AMIGGFAWNGFHKESLLLFIEMKG----ICDNGNNCNVQSCNSMINGYIRFGRLEEAQNL 257
           AMI G+A NG   E+L LF  M G    + D      + +C  +  G++  GR      L
Sbjct: 398 AMIKGYAENGDATEALALFKRMVGEGVDVTDVSVLAALHACGEL--GFLDEGR--RVHEL 453

Query: 258 FDTVPVRDEIS-WTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEA 316
              + +   ++   ++I  Y    +   A  +F  +  +  V+W AMI G  QN    +A
Sbjct: 454 LVRIGLESNVNVMNALITMYCKCKRTDLAAQVFDELGYKTRVSWNAMILGCTQNGSSEDA 513

Query: 317 TYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISM 376
             LF  M+   V P + T   +  A    ++    R IH   ++   + D+ +   LI M
Sbjct: 514 VRLFSRMQLENVKPDSFTLVSIIPALADISDPLQARWIHGYSIRLHLDQDVYVLTALIDM 573

Query: 377 YAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTF 436
           YAKCG +  A ++F++   R +++WN+M+ G+  HG     +++FE M  SG  PN  TF
Sbjct: 574 YAKCGRVSIARSLFNSARDRHVITWNAMIHGYGSHGSGKVAVELFEEMKSSGKVPNETTF 633

Query: 437 LGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLP 496
           L +LSACSHAGLV  G E F++M + Y ++PG EHY +M++LLGRAGK+ EA  F+ ++P
Sbjct: 634 LSVLSACSHAGLVDEGQEYFSSMKEDYGLEPGMEHYGTMVDLLGRAGKLHEAWSFIQKMP 693

Query: 497 FEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEH 556
            EP   ++GA+LGAC     N E+AE +A+R+ EL+P     HV+L NIYA +    +  
Sbjct: 694 MEPGISVYGAMLGACKL-HKNVELAEESAQRIFELEPEEGVYHVLLANIYANASLWKDVA 752

Query: 557 KLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
           ++R  M  KG++K PG S +     I  F SG     Q  +I
Sbjct: 753 RVRTAMEKKGLQKTPGWSIVQLKNEIHTFYSGSTNHQQAKDI 794



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 108/441 (24%), Positives = 189/441 (42%), Gaps = 70/441 (15%)

Query: 15  TSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNV- 73
           T+ +  Y K G +D A+ +F  M  RN VS+NAM+ G+ +NG  +EA  LF+ M    V 
Sbjct: 366 TAILDVYCKCGAVDSARKVFDGMQDRNSVSWNAMIKGYAENGDATEALALFKRMVGEGVD 425

Query: 74  ---VSWTAMICGLADAGRVCEARKLFEEMP----ERNVVSWNSMVVGLIRNGELNEARKV 126
              VS  A +    + G + E R++ E +     E NV   N+++    +    + A +V
Sbjct: 426 VTDVSVLAALHACGELGFLDEGRRVHELLVRIGLESNVNVMNALITMYCKCKRTDLAAQV 485

Query: 127 FNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEME------------------------ 162
           F+ +  K  +SWNAMI G  +     +A+ LF  M+                        
Sbjct: 486 FDELGYKTRVSWNAMILGCTQNGSSEDAVRLFSRMQLENVKPDSFTLVSIIPALADISDP 545

Query: 163 ---------------ERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGF 207
                          +++V   T++I  Y + G V     LF     ++V++W AMI G+
Sbjct: 546 LQARWIHGYSIRLHLDQDVYVLTALIDMYAKCGRVSIARSLFNSARDRHVITWNAMIHGY 605

Query: 208 AWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEI 267
             +G  K ++ LF EMK    +G   N  +  S+++     G ++E Q  F ++     +
Sbjct: 606 GSHGSGKVAVELFEEMKS---SGKVPNETTFLSVLSACSHAGLVDEGQEYFSSMKEDYGL 662

Query: 268 S-----WTSMIDGYLSVGQVSNAYYLFHNMPDRDAVA-WTAMISG--LVQN-ELFVEATY 318
                 + +M+D     G++  A+     MP    ++ + AM+    L +N EL  E+  
Sbjct: 663 EPGMEHYGTMVDLLGRAGKLHEAWSFIQKMPMEPGISVYGAMLGACKLHKNVELAEESAQ 722

Query: 319 LFMEMRAHGVPPLNATFSVLFGAAGATANI--DLGRQIHCV----LMKTESESDLILENC 372
              E+      P    + VL     A A++  D+ R    +    L KT   S + L+N 
Sbjct: 723 RIFELE-----PEEGVYHVLLANIYANASLWKDVARVRTAMEKKGLQKTPGWSIVQLKNE 777

Query: 373 LISMYAKCGVIDNAYNIFSNM 393
           + + Y+       A +I++ +
Sbjct: 778 IHTFYSGSTNHQQAKDIYARL 798



 Score =  102 bits (253), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 57/216 (26%), Positives = 106/216 (49%), Gaps = 6/216 (2%)

Query: 265 DEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMR 324
           + ++ T++ + Y    +  +A  +F  MP RD VAW A+++G  +N L   A  + + M+
Sbjct: 259 EALAATALANMYAKCRRPGDARRVFDRMPARDRVAWNALVAGYARNGLAEAAVGMVVRMQ 318

Query: 325 AH-GVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVI 383
              G  P   T   +  A      +   R++H   ++   +  + +   ++ +Y KCG +
Sbjct: 319 EEDGERPDAVTLVSVLPACADAQALGACREVHAFAVRGGFDEQVNVSTAILDVYCKCGAV 378

Query: 384 DNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSAC 443
           D+A  +F  M  R+ VSWN+M+ G++ +G A E L +F+ M+  G     V+ L  L AC
Sbjct: 379 DSARKVFDGMQDRNSVSWNAMIKGYAENGDATEALALFKRMVGEGVDVTDVSVLAALHAC 438

Query: 444 SHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLL 479
              G +  G  +   +     ++ G E  V+++N L
Sbjct: 439 GELGFLDEGRRVHELL-----VRIGLESNVNVMNAL 469



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 48/155 (30%), Positives = 76/155 (49%), Gaps = 16/155 (10%)

Query: 325 AHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVID 384
           A G  P+  TF+ L     A A++  GR +H  L       + +    L +MYAKC    
Sbjct: 218 ASGSGPVLRTFTSLLKLCAARADLATGRAVHAQLAARGLSPEALAATALANMYAKCRRPG 277

Query: 385 NAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESML-ESGTHPNSVTFLGILSAC 443
           +A  +F  M +RD V+WN++V G++ +GLA   + +   M  E G  P++VT + +L AC
Sbjct: 278 DARRVFDRMPARDRVAWNALVAGYARNGLAEAAVGMVVRMQEEDGERPDAVTLVSVLPAC 337

Query: 444 S-----------HAGLVSRGWE----LFNAMFDVY 463
           +           HA  V  G++    +  A+ DVY
Sbjct: 338 ADAQALGACREVHAFAVRGGFDEQVNVSTAILDVY 372



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 53/173 (30%), Positives = 86/173 (49%), Gaps = 14/173 (8%)

Query: 2   SERNHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEA 61
           S R H    V  LT+ I  Y+K G +  A++LF     R+V+++NAM+ G+  +G    A
Sbjct: 555 SIRLHLDQDVYVLTALIDMYAKCGRVSIARSLFNSARDRHVITWNAMIHGYGSHGSGKVA 614

Query: 62  RRLFEEMPER----NVVSWTAMICGLADAGRVCEARKLFEEMPER-----NVVSWNSMVV 112
             LFEEM       N  ++ +++   + AG V E ++ F  M E       +  + +MV 
Sbjct: 615 VELFEEMKSSGKVPNETTFLSVLSACSHAGLVDEGQEYFSSMKEDYGLEPGMEHYGTMVD 674

Query: 113 GLIRNGELNEARKVFNSMPIKNVIS-WNAMIAGYVECCMMGEAIVLFEEMEER 164
            L R G+L+EA      MP++  IS + AM+      C + + + L EE  +R
Sbjct: 675 LLGRAGKLHEAWSFIQKMPMEPGISVYGAMLGA----CKLHKNVELAEESAQR 723


>gi|15236277|ref|NP_195239.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75098809|sp|O49619.1|PP350_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g35130, chloroplastic; Flags: Precursor
 gi|2924523|emb|CAA17777.1| putative protein [Arabidopsis thaliana]
 gi|7270464|emb|CAB80230.1| putative protein [Arabidopsis thaliana]
 gi|332661071|gb|AEE86471.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 804

 Score =  276 bits (706), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 179/626 (28%), Positives = 319/626 (50%), Gaps = 53/626 (8%)

Query: 14  LTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMP---- 69
           LT ++  ++    +++A  LF  M + +   +N M+ GF   G   EA + +  M     
Sbjct: 67  LTRALRGFADSRLMEDALQLFDEMNKADAFLWNVMIKGFTSCGLYIEAVQFYSRMVFAGV 126

Query: 70  ERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVS----WNSMVVGLIRNGELNEARK 125
           + +  ++  +I  +A    + E +K+   + +   VS     NS++   ++ G   +A K
Sbjct: 127 KADTFTYPFVIKSVAGISSLEEGKKIHAMVIKLGFVSDVYVCNSLISLYMKLGCAWDAEK 186

Query: 126 VFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEM------------------------ 161
           VF  MP ++++SWN+MI+GY+       +++LF+EM                        
Sbjct: 187 VFEEMPERDIVSWNSMISGYLALGDGFSSLMLFKEMLKCGFKPDRFSTMSALGACSHVYS 246

Query: 162 ----------------EERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIG 205
                           E  +V+  TS++  Y + GEV     +F  M ++N+V+W  MIG
Sbjct: 247 PKMGKEIHCHAVRSRIETGDVMVMTSILDMYSKYGEVSYAERIFNGMIQRNIVAWNVMIG 306

Query: 206 GFAWNGFHKESLLLFIEMKGICDNGNNCNV-QSCNSMINGYIRFGRLEEAQNLFDTVPVR 264
            +A NG   ++ L F +M     NG   +V  S N +    I  GR      +     + 
Sbjct: 307 CYARNGRVTDAFLCFQKMSE--QNGLQPDVITSINLLPASAILEGRTIHGYAMRRGF-LP 363

Query: 265 DEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMR 324
             +  T++ID Y   GQ+ +A  +F  M +++ ++W ++I+  VQN     A  LF E+ 
Sbjct: 364 HMVLETALIDMYGECGQLKSAEVIFDRMAEKNVISWNSIIAAYVQNGKNYSALELFQELW 423

Query: 325 AHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVID 384
              + P + T + +  A   + ++  GR+IH  ++K+   S+ I+ N L+ MYA CG ++
Sbjct: 424 DSSLVPDSTTIASILPAYAESLSLSEGREIHAYIVKSRYWSNTIILNSLVHMYAMCGDLE 483

Query: 385 NAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACS 444
           +A   F++++ +D+VSWNS++M ++ HG    ++ +F  M+ S  +PN  TF  +L+ACS
Sbjct: 484 DARKCFNHILLKDVVSWNSIIMAYAVHGFGRISVWLFSEMIASRVNPNKSTFASLLAACS 543

Query: 445 HAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIW 504
            +G+V  GWE F +M   Y I PG EHY  M++L+GR G    A+ F+  +PF P  RIW
Sbjct: 544 ISGMVDEGWEYFESMKREYGIDPGIEHYGCMLDLIGRTGNFSAAKRFLEEMPFVPTARIW 603

Query: 505 GALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGL 564
           G+LL A      +  IAE AA+++ +++  N   +V+L N+YA +GR  + +++++ M  
Sbjct: 604 GSLLNA-SRNHKDITIAEFAAEQIFKMEHDNTGCYVLLLNMYAEAGRWEDVNRIKLLMES 662

Query: 565 KGVRKVPGCSWLMRNGGIQMFLSGDK 590
           KG+ +    S +   G   +F +GD+
Sbjct: 663 KGISRTSSRSTVEAKGKSHVFTNGDR 688



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 81/332 (24%), Positives = 150/332 (45%), Gaps = 52/332 (15%)

Query: 11  VVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPE 70
           V+ +TS +  YSK G +  A+ +F  M QRN+V++N M+  + +NGR+++A   F++M E
Sbjct: 267 VMVMTSILDMYSKYGEVSYAERIFNGMIQRNIVAWNVMIGCYARNGRVTDAFLCFQKMSE 326

Query: 71  RN------------------------------------VVSWTAMICGLADAGRVCEARK 94
           +N                                    +V  TA+I    + G++  A  
Sbjct: 327 QNGLQPDVITSINLLPASAILEGRTIHGYAMRRGFLPHMVLETALIDMYGECGQLKSAEV 386

Query: 95  LFEEMPERNVVSWNSMVVGLIRNGELNEARKVF----NSMPIKNVISWNAMIAGYVECCM 150
           +F+ M E+NV+SWNS++   ++NG+   A ++F    +S  + +  +  +++  Y E   
Sbjct: 387 IFDRMAEKNVISWNSIIAAYVQNGKNYSALELFQELWDSSLVPDSTTIASILPAYAESLS 446

Query: 151 MGEA----IVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGG 206
           + E       + +     N +   S++  Y   G++E+    F  +  K+VVSW ++I  
Sbjct: 447 LSEGREIHAYIVKSRYWSNTIILNSLVHMYAMCGDLEDARKCFNHILLKDVVSWNSIIMA 506

Query: 207 FAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDE 266
           +A +GF + S+ LF EM     +  N N  +  S++      G ++E    F+++     
Sbjct: 507 YAVHGFGRISVWLFSEMIA---SRVNPNKSTFASLLAACSISGMVDEGWEYFESMKREYG 563

Query: 267 IS-----WTSMIDGYLSVGQVSNAYYLFHNMP 293
           I      +  M+D     G  S A      MP
Sbjct: 564 IDPGIEHYGCMLDLIGRTGNFSAAKRFLEEMP 595


>gi|449443492|ref|XP_004139511.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
           mitochondrial-like [Cucumis sativus]
          Length = 678

 Score =  276 bits (706), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 157/483 (32%), Positives = 267/483 (55%), Gaps = 16/483 (3%)

Query: 111 VVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEME--ERNVVT 168
           V+ LI  G L   R +++ M  K           Y+     G AI    +    E ++V 
Sbjct: 92  VLDLINCGSLEPERTLYSKMLNK---------CTYLRKLKQGRAIHAHIQSSTFEDDLVL 142

Query: 169 WTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICD 228
              +++ Y + G +EE   LF +MP K++VSWT +I G++ +G   E+L LF +M  +  
Sbjct: 143 LNFILNMYAKCGSLEEAQDLFDKMPTKDMVSWTVLISGYSQSGQASEALALFPKMLHLGF 202

Query: 229 NGNNCNVQSC--NSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAY 286
             N   + S    S        GR   A +L     +   +  +S++D Y     +  A 
Sbjct: 203 QPNEFTLSSLLKASGTGPSDHHGRQLHAFSLKYGYDMNVHVG-SSLLDMYARWAHMREAK 261

Query: 287 YLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATA 346
            +F+++  ++ V+W A+I+G  +         LF++M   G  P + T+S +F A  ++ 
Sbjct: 262 VIFNSLAAKNVVSWNALIAGHARKGEGEHVMRLFLQMLRQGFEPTHFTYSSVFTACASSG 321

Query: 347 NIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVM 406
           +++ G+ +H  ++K+  +    + N LI MYAK G I +A  +F  +V +D+VSWNS++ 
Sbjct: 322 SLEQGKWVHAHVIKSGGQPIAYIGNTLIDMYAKSGSIKDAKKVFRRLVKQDIVSWNSIIS 381

Query: 407 GFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQ 466
           G++ HGL  E L++FE ML++   PN +TFL +L+ACSH+GL+  G   F  M   +KI+
Sbjct: 382 GYAQHGLGAEALQLFEQMLKAKVQPNEITFLSVLTACSHSGLLDEGQYYFELM-KKHKIE 440

Query: 467 PGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAK 526
               H+V++++LLGRAG++ EA +F+  +P +P   +WGALLG+C     N ++  +AA+
Sbjct: 441 AQVAHHVTVVDLLGRAGRLNEANKFIEEMPIKPTAAVWGALLGSCRM-HKNMDLGVYAAE 499

Query: 527 RLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFL 586
           ++ ELDP ++  HV+L NIYA++GR  +  K+R  M   GV+K P CSW+     + +F+
Sbjct: 500 QIFELDPHDSGPHVLLSNIYASAGRLSDAAKVRKMMKESGVKKEPACSWVEIENEVHVFV 559

Query: 587 SGD 589
           + D
Sbjct: 560 AND 562



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 88/371 (23%), Positives = 153/371 (41%), Gaps = 50/371 (13%)

Query: 69  PERNVVSWTAMICGLA---DAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARK 125
           PER + S     C        GR   A  +     E ++V  N ++    + G L EA+ 
Sbjct: 103 PERTLYSKMLNKCTYLRKLKQGRAIHAH-IQSSTFEDDLVLLNFILNMYAKCGSLEEAQD 161

Query: 126 VFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEM------------------------ 161
           +F+ MP K+++SW  +I+GY +     EA+ LF +M                        
Sbjct: 162 LFDKMPTKDMVSWTVLISGYSQSGQASEALALFPKMLHLGFQPNEFTLSSLLKASGTGPS 221

Query: 162 ---------------EERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGG 206
                           + NV   +S++  Y R   + E   +F  +  KNVVSW A+I G
Sbjct: 222 DHHGRQLHAFSLKYGYDMNVHVGSSLLDMYARWAHMREAKVIFNSLAAKNVVSWNALIAG 281

Query: 207 FAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVR-- 264
            A  G  +  + LF++M      G      + +S+       G LE+ + +   V     
Sbjct: 282 HARKGEGEHVMRLFLQM---LRQGFEPTHFTYSSVFTACASSGSLEQGKWVHAHVIKSGG 338

Query: 265 DEISW--TSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFME 322
             I++   ++ID Y   G + +A  +F  +  +D V+W ++ISG  Q+ L  EA  LF +
Sbjct: 339 QPIAYIGNTLIDMYAKSGSIKDAKKVFRRLVKQDIVSWNSIISGYAQHGLGAEALQLFEQ 398

Query: 323 MRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGV 382
           M    V P   TF  +  A   +  +D G+    ++ K + E+ +     ++ +  + G 
Sbjct: 399 MLKAKVQPNEITFLSVLTACSHSGLLDEGQYYFELMKKHKIEAQVAHHVTVVDLLGRAGR 458

Query: 383 IDNAYNIFSNM 393
           ++ A      M
Sbjct: 459 LNEANKFIEEM 469



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 95/383 (24%), Positives = 172/383 (44%), Gaps = 61/383 (15%)

Query: 21  YSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEM------PERNVV 74
           Y+K G ++EA+ LF  MP +++VS+  ++SG+ Q+G+ SEA  LF +M      P    +
Sbjct: 150 YAKCGSLEEAQDLFDKMPTKDMVSWTVLISGYSQSGQASEALALFPKMLHLGFQPNEFTL 209

Query: 75  SWTAMICGLADA---GRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMP 131
           S      G   +   GR   A  L +   + NV   +S++    R   + EA+ +FNS+ 
Sbjct: 210 SSLLKASGTGPSDHHGRQLHAFSL-KYGYDMNVHVGSSLLDMYARWAHMREAKVIFNSLA 268

Query: 132 IKNVISWNAMIAGYVECCMMGEAIVLFEEME----ERNVVTWTS---------------- 171
            KNV+SWNA+IAG+         + LF +M     E    T++S                
Sbjct: 269 AKNVVSWNALIAGHARKGEGEHVMRLFLQMLRQGFEPTHFTYSSVFTACASSGSLEQGKW 328

Query: 172 -------------------MISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGF 212
                              +I  Y ++G +++   +FRR+ ++++VSW ++I G+A +G 
Sbjct: 329 VHAHVIKSGGQPIAYIGNTLIDMYAKSGSIKDAKKVFRRLVKQDIVSWNSIISGYAQHGL 388

Query: 213 HKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTV---PVRDEIS- 268
             E+L LF +M       N        S++      G L+E Q  F+ +    +  +++ 
Sbjct: 389 GAEALQLFEQMLKAKVQPNEITFL---SVLTACSHSGLLDEGQYYFELMKKHKIEAQVAH 445

Query: 269 WTSMIDGYLSVGQVSNAYYLFHNMPDRDAVA-WTAMISGLVQN---ELFVEATYLFMEMR 324
             +++D     G+++ A      MP +   A W A++     +   +L V A     E+ 
Sbjct: 446 HVTVVDLLGRAGRLNEANKFIEEMPIKPTAAVWGALLGSCRMHKNMDLGVYAAEQIFELD 505

Query: 325 AHGVPPLNATFSVLFGAAGATAN 347
            H   P +   S ++ +AG  ++
Sbjct: 506 PHDSGP-HVLLSNIYASAGRLSD 527



 Score = 88.6 bits (218), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 66/259 (25%), Positives = 111/259 (42%), Gaps = 47/259 (18%)

Query: 301 TAMISGLVQNELFVEAT--------------YLFMEMRAHGVPPLNATFSVLFGAAGATA 346
           TA  +G++Q+E  +  T              Y+   +    + P    +S +        
Sbjct: 60  TAPFTGVLQDEDLLRTTHISSSGTSSNSTGLYVLDLINCGSLEPERTLYSKMLNKCTYLR 119

Query: 347 NIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVM 406
            +  GR IH  +  +  E DL+L N +++MYAKCG ++ A ++F  M ++D+VSW  ++ 
Sbjct: 120 KLKQGRAIHAHIQSSTFEDDLVLLNFILNMYAKCGSLEEAQDLFDKMPTKDMVSWTVLIS 179

Query: 407 GFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACS-----------HAGLVSRGWEL 455
           G+S  G A+E L +F  ML  G  PN  T   +L A             HA  +  G+++
Sbjct: 180 GYSQSGQASEALALFPKMLHLGFQPNEFTLSSLLKASGTGPSDHHGRQLHAFSLKYGYDM 239

Query: 456 ----FNAMFDVYKIQPGPEHYVSMINLLGR----------AGKIKEAE-EFVLRL----- 495
                +++ D+Y           + N L            AG  ++ E E V+RL     
Sbjct: 240 NVHVGSSLLDMYARWAHMREAKVIFNSLAAKNVVSWNALIAGHARKGEGEHVMRLFLQML 299

Query: 496 --PFEPDHRIWGALLGACG 512
              FEP H  + ++  AC 
Sbjct: 300 RQGFEPTHFTYSSVFTACA 318



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 71/311 (22%), Positives = 127/311 (40%), Gaps = 58/311 (18%)

Query: 7   PKSLVVHLTSSITKYSKRGFIDEAKALFQLM------PQR-------------------- 40
           P   +V  T  I+ YS+ G   EA ALF  M      P                      
Sbjct: 167 PTKDMVSWTVLISGYSQSGQASEALALFPKMLHLGFQPNEFTLSSLLKASGTGPSDHHGR 226

Query: 41  -------------NVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAG 87
                        NV   +++L  + +   + EA+ +F  +  +NVVSW A+I G A  G
Sbjct: 227 QLHAFSLKYGYDMNVHVGSSLLDMYARWAHMREAKVIFNSLAAKNVVSWNALIAGHARKG 286

Query: 88  RVCEARKLFEEMP----ERNVVSWNSMVVGLIRNGELNEARKVF------NSMPIKNVIS 137
                 +LF +M     E    +++S+      +G L + + V          PI  +  
Sbjct: 287 EGEHVMRLFLQMLRQGFEPTHFTYSSVFTACASSGSLEQGKWVHAHVIKSGGQPIAYI-- 344

Query: 138 WNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNV 197
            N +I  Y +   + +A  +F  + ++++V+W S+ISGY + G   E   LF +M +  V
Sbjct: 345 GNTLIDMYAKSGSIKDAKKVFRRLVKQDIVSWNSIISGYAQHGLGAEALQLFEQMLKAKV 404

Query: 198 ----VSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEE 253
               +++ +++   + +G   E    F  MK    +     V    ++++   R GRL E
Sbjct: 405 QPNEITFLSVLTACSHSGLLDEGQYYFELMK---KHKIEAQVAHHVTVVDLLGRAGRLNE 461

Query: 254 AQNLFDTVPVR 264
           A    + +P++
Sbjct: 462 ANKFIEEMPIK 472


>gi|297798624|ref|XP_002867196.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297313032|gb|EFH43455.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 997

 Score =  276 bits (706), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 198/656 (30%), Positives = 321/656 (48%), Gaps = 78/656 (11%)

Query: 6   HPKSLVVHLTSSIT-KYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRL 64
           HP  + + L S I+   S+ G +   +          ++S N +LSG+L  G+ S   + 
Sbjct: 250 HPNEITLRLLSRISGDDSEAGQVKSFENGNDASAVSEIISRNKILSGYLHAGQYSALLKC 309

Query: 65  FEEMPERNV-VSWTAMICGLADAGRV----------CEARKLFEEMPERNVVSWNSMVVG 113
           F +M E ++       I  LA A R+          C A KL  ++    +   NS++  
Sbjct: 310 FMDMVESDLECDQVTFILVLATAVRLDSLALGQQVHCMALKLGLDL---MLTVSNSLINM 366

Query: 114 LIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEME----ERNVVTW 169
             +  ++  AR VFN+M  +++ISWN++IAG  +  +  EA+ LF ++     + +  T 
Sbjct: 367 YCKLRKIGLARTVFNNMSERDLISWNSVIAGIAQSDLEVEAVCLFMQLLRCGLKPDHYTM 426

Query: 170 TSMISGYCRAGEVEEGYCLFRRM-----PRKNVVSW---TAMIGGFAWNGFHKESLLLFI 221
           TS++     A  + EG  L +++        NV      TA+I  ++ N   KE+ +LF 
Sbjct: 427 TSVLKA---ASSLPEGLSLSKQIHVHAIKTNNVADSFVSTALIDAYSRNRCMKEAEVLF- 482

Query: 222 EMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEIS------------- 268
                    NN ++ + N+M++GY +     +   LF  +  + E S             
Sbjct: 483 -------GRNNFDLVAWNAMMSGYTQSHDGHKTLELFALMHKQGERSDDFTLATVLKTCG 535

Query: 269 ------------------------WTS--MIDGYLSVGQVSNAYYLFHNMPDRDAVAWTA 302
                                   W S  ++D Y+  G +S A + F ++P  D VAWT 
Sbjct: 536 FLFAINQGKQVHAYAIKSGYDLDLWVSSGILDMYVKCGDMSAAQFAFDSIPVPDDVAWTT 595

Query: 303 MISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTE 362
           +ISG ++N     A ++F +MR  GV P   T + L  A+     ++ GRQIH   +K  
Sbjct: 596 LISGCIENGEEERALHVFSQMRLMGVLPDEFTIATLAKASSCLTALEQGRQIHANALKLN 655

Query: 363 SESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFE 422
             SD  +   L+ MYAKCG ID+AY +F  +   ++ +WN+M++G + HG   E L++F+
Sbjct: 656 CTSDPFVGTSLVDMYAKCGSIDDAYCLFKRIEMMNITAWNAMLVGLAQHGEGKEALQLFK 715

Query: 423 SMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRA 482
            M   G  P+ VTF+G+LSACSH+GLVS  ++   +M   Y I+P  EHY  + + LGRA
Sbjct: 716 QMESLGIKPDKVTFIGVLSACSHSGLVSEAYKYIRSMHRDYGIKPEIEHYSCLADALGRA 775

Query: 483 GKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVL 542
           G +KEAE  +  +  E    ++  LL AC   +G+ E  +  A +LLEL+PL++ A+V+L
Sbjct: 776 GLVKEAENLIDSMSMEASASMYRTLLAACRV-QGDTETGKRVATKLLELEPLDSSAYVLL 834

Query: 543 CNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
            N+YAA+ +  E    R  M    V+K PG SW+     I +F+  D+   Q   I
Sbjct: 835 SNMYAAASKWDEMKLARTMMKGHKVKKDPGFSWIEVKNKIHLFVVDDRSNPQTELI 890



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 150/595 (25%), Positives = 279/595 (46%), Gaps = 51/595 (8%)

Query: 3   ERNHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGR----- 57
           E N  + LV +L   I+ YSK G +  A+ +F  MP+R++VS+N++L+ + Q+       
Sbjct: 76  EENPERFLVNNL---ISMYSKCGSLTYARRVFDKMPERDLVSWNSILAAYAQSSEGVVEN 132

Query: 58  LSEARRLFEEMPERNV----VSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVG 113
           + EA  LF  + +  V    ++ + M+     +G VC A + F     +  +  +  V G
Sbjct: 133 VKEAFLLFRILRQDVVYTSRMTLSPMLKLCLHSGYVC-ASESFHGYACKIGLDGDDFVAG 191

Query: 114 LIRN-----GELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEER---- 164
            + N     G++ E R +F  MP ++V+ WN M+  Y+E     EAI L           
Sbjct: 192 ALVNIYLKFGKVKEGRVLFEEMPYRDVVLWNLMLKAYLEMGFKEEAIDLSSAFHTSGLHP 251

Query: 165 NVVTWT--SMISG-YCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFI 221
           N +T    S ISG    AG+V+             ++S   ++ G+   G +   L  F+
Sbjct: 252 NEITLRLLSRISGDDSEAGQVKSFENGNDASAVSEIISRNKILSGYLHAGQYSALLKCFM 311

Query: 222 EMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLF-DTVPVRDEISWT---SMIDGYL 277
           +M    ++   C+  +   ++   +R   L   Q +    + +  ++  T   S+I+ Y 
Sbjct: 312 DM---VESDLECDQVTFILVLATAVRLDSLALGQQVHCMALKLGLDLMLTVSNSLINMYC 368

Query: 278 SVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATF-S 336
            + ++  A  +F+NM +RD ++W ++I+G+ Q++L VEA  LFM++   G+ P + T  S
Sbjct: 369 KLRKIGLARTVFNNMSERDLISWNSVIAGIAQSDLEVEAVCLFMQLLRCGLKPDHYTMTS 428

Query: 337 VLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSR 396
           VL  A+     + L +QIH   +KT + +D  +   LI  Y++   +  A  +F    + 
Sbjct: 429 VLKAASSLPEGLSLSKQIHVHAIKTNNVADSFVSTALIDAYSRNRCMKEAEVLFGRN-NF 487

Query: 397 DLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELF 456
           DLV+WN+M+ G++     ++TL++F  M + G   +  T   +L  C     +++G ++ 
Sbjct: 488 DLVAWNAMMSGYTQSHDGHKTLELFALMHKQGERSDDFTLATVLKTCGFLFAINQGKQVH 547

Query: 457 NAMFDVYKIQPGP--EHYVS--MINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACG 512
                 Y I+ G   + +VS  ++++  + G +  A+     +P  PD   W  L+  C 
Sbjct: 548 -----AYAIKSGYDLDLWVSSGILDMYVKCGDMSAAQFAFDSIPV-PDDVAWTTLISGC- 600

Query: 513 FCEGNAEIAEH--AAKRLLELDP----LNAPAHVVLCNIYAASGRHVEEHKLRMD 561
              G  E A H  +  RL+ + P    +   A    C      GR +  + L+++
Sbjct: 601 IENGEEERALHVFSQMRLMGVLPDEFTIATLAKASSCLTALEQGRQIHANALKLN 655



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 113/495 (22%), Positives = 214/495 (43%), Gaps = 39/495 (7%)

Query: 21  YSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEM------PERNVV 74
           Y K G + E + LF+ MP R+VV +N ML  +L+ G   EA  L          P    +
Sbjct: 197 YLKFGKVKEGRVLFEEMPYRDVVLWNLMLKAYLEMGFKEEAIDLSSAFHTSGLHPNEITL 256

Query: 75  SWTAMICG-LADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIK 133
              + I G  ++AG+V       +      ++S N ++ G +  G+ +   K F  M   
Sbjct: 257 RLLSRISGDDSEAGQVKSFENGNDASAVSEIISRNKILSGYLHAGQYSALLKCFMDMVES 316

Query: 134 NVISWNAMIAGYVECCMMGEAIVLFEEME--------ERNVVTWTSMISGYCRAGEVEEG 185
           ++          +   +  +++ L +++         +  +    S+I+ YC+  ++   
Sbjct: 317 DLECDQVTFILVLATAVRLDSLALGQQVHCMALKLGLDLMLTVSNSLINMYCKLRKIGLA 376

Query: 186 YCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGY 245
             +F  M  ++++SW ++I G A +    E++ LF+++         C ++  +  +   
Sbjct: 377 RTVFNNMSERDLISWNSVIAGIAQSDLEVEAVCLFMQLL-------RCGLKPDHYTMTSV 429

Query: 246 IRFG-RLEEAQNL--------FDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRD 296
           ++    L E  +L          T  V D    T++ID Y     +  A  LF    + D
Sbjct: 430 LKAASSLPEGLSLSKQIHVHAIKTNNVADSFVSTALIDAYSRNRCMKEAEVLF-GRNNFD 488

Query: 297 AVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHC 356
            VAW AM+SG  Q+    +   LF  M   G    + T + +    G    I+ G+Q+H 
Sbjct: 489 LVAWNAMMSGYTQSHDGHKTLELFALMHKQGERSDDFTLATVLKTCGFLFAINQGKQVHA 548

Query: 357 VLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANE 416
             +K+  + DL + + ++ MY KCG +  A   F ++   D V+W +++ G   +G    
Sbjct: 549 YAIKSGYDLDLWVSSGILDMYVKCGDMSAAQFAFDSIPVPDDVAWTTLISGCIENGEEER 608

Query: 417 TLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELF-NAMFDVYKIQPGPEHYV-- 473
            L VF  M   G  P+  T   +  A S    + +G ++  NA+    K+    + +V  
Sbjct: 609 ALHVFSQMRLMGVLPDEFTIATLAKASSCLTALEQGRQIHANAL----KLNCTSDPFVGT 664

Query: 474 SMINLLGRAGKIKEA 488
           S++++  + G I +A
Sbjct: 665 SLVDMYAKCGSIDDA 679



 Score = 72.4 bits (176), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 52/176 (29%), Positives = 88/176 (50%), Gaps = 11/176 (6%)

Query: 342 AGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSW 401
           A +T+++ LG+  H  ++  E   +  L N LISMY+KCG +  A  +F  M  RDLVSW
Sbjct: 56  AISTSDLMLGKCTHARILALEENPERFLVNNLISMYSKCGSLTYARRVFDKMPERDLVSW 115

Query: 402 NSMVMGF--SHHGL---ANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELF 456
           NS++  +  S  G+     E   +F  + +   + + +T   +L  C H+G V    E F
Sbjct: 116 NSILAAYAQSSEGVVENVKEAFLLFRILRQDVVYTSRMTLSPMLKLCLHSGYVCAS-ESF 174

Query: 457 NAMFDVYKIQPGPEHYV--SMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGA 510
           +      KI    + +V  +++N+  + GK+KE       +P+  D  +W  +L A
Sbjct: 175 HGY--ACKIGLDGDDFVAGALVNIYLKFGKVKEGRVLFEEMPYR-DVVLWNLMLKA 227


>gi|242077664|ref|XP_002448768.1| hypothetical protein SORBIDRAFT_06g032835 [Sorghum bicolor]
 gi|241939951|gb|EES13096.1| hypothetical protein SORBIDRAFT_06g032835 [Sorghum bicolor]
          Length = 598

 Score =  276 bits (706), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 181/555 (32%), Positives = 277/555 (49%), Gaps = 62/555 (11%)

Query: 41  NVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEM- 99
           +V  +N +L  + +        R+ +EMP RN VSW+A I GLA  GR  +A  LF  M 
Sbjct: 76  HVFLHNHLLIAYFKCRLHRRGLRVLDEMPHRNAVSWSAAIAGLAQGGRPRDALALFIRMR 135

Query: 100 -----PER-------NVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVE 147
                P         N  S+     G  R       R  F+S    +V   NA +A    
Sbjct: 136 LAGCPPNEFALASALNASSFAPAGTGCARQLYALSVRLGFDS----SVFLTNAFLAAMAR 191

Query: 148 CCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNV----VSWTAM 203
              + +A+ LF     R++V+W ++++G+ R   V +G+ L+RRM R+ V     S++ +
Sbjct: 192 HGQLEDAVRLFNGSSVRDIVSWNTLLAGFARHWSV-QGWILWRRMVREAVRADGFSFSTV 250

Query: 204 IGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPV 263
           + G A +      L +  +   +  +G   +V   NS++  Y++   L +    F  +  
Sbjct: 251 LSGLAASTSLASGLQVHAQ---LVKSGFGDDVYVGNSLVEMYMKSKCLADGTMAFAEIRC 307

Query: 264 RDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEM 323
           +D +SWT M  G L  G+ S A  +   M          M+ G++ N             
Sbjct: 308 KDVVSWTGMAAGCLHCGEPSKAIGILSQM----------MLDGVMPNSY----------- 346

Query: 324 RAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVI 383
                     TF+    A  +  ++D GR++H  ++K   +SD+ + N LI MYAKCG +
Sbjct: 347 ----------TFATSANACASLTDLDEGRKVHGYVIKLGDDSDIGVNNALIDMYAKCGSV 396

Query: 384 DNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSAC 443
             A+ +F +M  R ++SW +M+MGF+H+G A E ++VF+ ML  G  PN VT + IL AC
Sbjct: 397 ACAHKVFQSMQQRPVISWTAMIMGFAHNGRAQEAVEVFDDMLLKGVAPNRVTMICILYAC 456

Query: 444 SHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRI 503
           S  G V  GW  FNAM D + IQPG +HY  M++LLG+AG I+EAEE + R+PF P   +
Sbjct: 457 SQGGFVDEGWIYFNAMEDKFGIQPGEDHYACMVDLLGKAGHIEEAEELISRMPFPPGVLV 516

Query: 504 WGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMG 563
           W ALLGAC    GN  +   AA+  L L+  +   +++LCN  A  G+H +    R   G
Sbjct: 517 WQALLGAC-HRHGNEAVGRRAAEHALALENDDPSTYMLLCNTLA--GQH-DWDGARRARG 572

Query: 564 LKG--VRKVPGCSWL 576
           L G  + K+PG SW 
Sbjct: 573 LMGAEILKLPGSSWF 587



 Score = 85.9 bits (211), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 81/348 (23%), Positives = 154/348 (44%), Gaps = 60/348 (17%)

Query: 12  VHLTSS-ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSE---ARRLFEE 67
           V LT++ +   ++ G +++A  LF     R++VS+N +L+GF ++  +      RR+  E
Sbjct: 179 VFLTNAFLAAMARHGQLEDAVRLFNGSSVRDIVSWNTLLAGFARHWSVQGWILWRRMVRE 238

Query: 68  MPERNVVSWTAMICGLADAGRVCEARKLFEEMPER----NVVSWNSMVVGLIRNGELNEA 123
               +  S++ ++ GLA +  +    ++  ++ +     +V   NS+V   +++  L + 
Sbjct: 239 AVRADGFSFSTVLSGLAASTSLASGLQVHAQLVKSGFGDDVYVGNSLVEMYMKSKCLADG 298

Query: 124 RKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEM---------------------- 161
              F  +  K+V+SW  M AG + C    +AI +  +M                      
Sbjct: 299 TMAFAEIRCKDVVSWTGMAAGCLHCGEPSKAIGILSQMMLDGVMPNSYTFATSANACASL 358

Query: 162 -----------------EERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMI 204
                            ++ ++    ++I  Y + G V   + +F+ M ++ V+SWTAMI
Sbjct: 359 TDLDEGRKVHGYVIKLGDDSDIGVNNALIDMYAKCGSVACAHKVFQSMQQRPVISWTAMI 418

Query: 205 GGFAWNGFHKESLLLFIEM--KGICDNGNN--CNVQSCNS---MINGYIRFGRLEEAQNL 257
            GFA NG  +E++ +F +M  KG+  N     C + +C+    +  G+I F  +E+    
Sbjct: 419 MGFAHNGRAQEAVEVFDDMLLKGVAPNRVTMICILYACSQGGFVDEGWIYFNAMEDK--- 475

Query: 258 FDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAV-AWTAMI 304
           F   P  D   +  M+D     G +  A  L   MP    V  W A++
Sbjct: 476 FGIQPGEDH--YACMVDLLGKAGHIEEAEELISRMPFPPGVLVWQALL 521



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 51/224 (22%), Positives = 100/224 (44%), Gaps = 33/224 (14%)

Query: 233 CNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNM 292
           C+V   N ++  Y +         + D +P R+ +SW++ I G    G+           
Sbjct: 75  CHVFLHNHLLIAYFKCRLHRRGLRVLDEMPHRNAVSWSAAIAGLAQGGR----------- 123

Query: 293 PDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLN-ATFSVLFGAAGATANIDLG 351
             RDA+A                   LF+ MR  G PP   A  S L  ++ A A     
Sbjct: 124 -PRDALA-------------------LFIRMRLAGCPPNEFALASALNASSFAPAGTGCA 163

Query: 352 RQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHH 411
           RQ++ + ++   +S + L N  ++  A+ G +++A  +F+    RD+VSWN+++ GF+ H
Sbjct: 164 RQLYALSVRLGFDSSVFLTNAFLAAMARHGQLEDAVRLFNGSSVRDIVSWNTLLAGFARH 223

Query: 412 GLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWEL 455
             + +   ++  M+      +  +F  +LS  + +  ++ G ++
Sbjct: 224 -WSVQGWILWRRMVREAVRADGFSFSTVLSGLAASTSLASGLQV 266



 Score = 42.0 bits (97), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 32/113 (28%), Positives = 51/113 (45%), Gaps = 1/113 (0%)

Query: 335 FSVLFGAAGATANIDLGRQIHCVLMKTES-ESDLILENCLISMYAKCGVIDNAYNIFSNM 393
           ++ L   +GATA+  L   +H  L+K       + L N L+  Y KC +      +   M
Sbjct: 44  YAALLQRSGATADPRLAAALHAALLKPGVLACHVFLHNHLLIAYFKCRLHRRGLRVLDEM 103

Query: 394 VSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHA 446
             R+ VSW++ + G +  G   + L +F  M  +G  PN       L+A S A
Sbjct: 104 PHRNAVSWSAAIAGLAQGGRPRDALALFIRMRLAGCPPNEFALASALNASSFA 156


>gi|255574235|ref|XP_002528032.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223532562|gb|EEF34350.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 730

 Score =  276 bits (706), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 172/564 (30%), Positives = 271/564 (48%), Gaps = 58/564 (10%)

Query: 83  LADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMI 142
           LADA  + E   +   +P      WN ++   +RNG   EA   +  M  K +       
Sbjct: 144 LADAHTITENSNILHPLP------WNLLISSYVRNGLHGEALSAYKQMTHKGIRPDKFTY 197

Query: 143 AGYVECCMMGEAIVLFEEMEER--------NVVTWTSMISGYCRAGEVEEGYCLFRRMPR 194
              ++ C     I   +++           N+    S++S Y + GE+    CLF  M  
Sbjct: 198 PSVLKACGEKLDIAFGKKLHASINASCLGWNLFVHNSLVSMYAKTGELSTARCLFENMLE 257

Query: 195 KNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEA 254
           ++ VSW  MI G+A  G  KE+  LF +M+     G   N+ + N++  G ++ G  EEA
Sbjct: 258 RDDVSWNTMISGYASKGMWKEAFELFGKMR---VEGIELNIITWNTIAGGCVQSGNFEEA 314

Query: 255 QNLFD-------------------------TVPVRDEISWTSMIDGYLSVGQVSNA---- 285
             L                            + +  EI  +++   Y  V  V NA    
Sbjct: 315 LELLSHMRSYGIDMDSVATIIGLGACSHIGAIKLGREIHGSAIRSFYDGVDNVKNALITM 374

Query: 286 ----------YYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATF 335
                     Y LF +   ++ + W +M+SG    +   EA++LF EM   G+ P   T 
Sbjct: 375 YSRCKYLRHAYNLFQSTRTKNIITWNSMLSGYTHMDRSEEASFLFREMLLSGIEPNYVTI 434

Query: 336 SVLFGAAGATANIDLGRQIHCVLMKTESESD-LILENCLISMYAKCGVIDNAYNIFSNMV 394
           + +       AN+  G++ HC +++     D L+L N L+ MYA+ G +  A  +F ++ 
Sbjct: 435 ASILPLCARVANLQHGKEFHCYILRRAGFKDYLLLWNSLVDMYARSGKVLEAKRLFDSIS 494

Query: 395 SRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWE 454
            RD V++ S++ G+   G   E LK+F+ M +    P+ VT + +LSACSH+GLV+ G +
Sbjct: 495 RRDEVTYTSLIAGYGIQGEGREALKLFDEMKKRHIKPDHVTMVAVLSACSHSGLVTEGIK 554

Query: 455 LFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFC 514
           LF  M   Y I P  EH+  M++L GRAG + +A+E + R+P+ P   +W  LLGAC   
Sbjct: 555 LFELMPSAYGIIPRLEHFACMVDLFGRAGLLHKAKEMITRMPYRPSSAMWATLLGACRI- 613

Query: 515 EGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCS 574
            GNAEI E AA++LLE+ P N+  +V++ N+YAA+G   +  K+R  M   GVRK PGC+
Sbjct: 614 HGNAEIGEWAAEKLLEMRPENSGYYVLIANMYAAAGCWSKLAKVRTYMRDLGVRKAPGCA 673

Query: 575 WLMRNGGIQMFLSGDKIPAQVAEI 598
           W+    G   FL  D     V ++
Sbjct: 674 WVDVGSGFFPFLVDDTSKPHVNKL 697



 Score =  135 bits (339), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 106/360 (29%), Positives = 162/360 (45%), Gaps = 61/360 (16%)

Query: 41  NVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMP 100
           N+  +N+++S + + G LS AR LFE M ER+ VSW  MI G A  G   EA +LF +M 
Sbjct: 228 NLFVHNSLVSMYAKTGELSTARCLFENMLERDDVSWNTMISGYASKGMWKEAFELFGKMR 287

Query: 101 ----ERNVVSWNSMVVGLIRNGELNEARKVFNSM--------PIKNVISW---------- 138
               E N+++WN++  G +++G   EA ++ + M         +  +I            
Sbjct: 288 VEGIELNIITWNTIAGGCVQSGNFEEALELLSHMRSYGIDMDSVATIIGLGACSHIGAIK 347

Query: 139 ---------------------NAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYC 177
                                NA+I  Y  C  +  A  LF+    +N++TW SM+SGY 
Sbjct: 348 LGREIHGSAIRSFYDGVDNVKNALITMYSRCKYLRHAYNLFQSTRTKNIITWNSMLSGYT 407

Query: 178 RAGEVEEGYCLFRRM------PRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGN 231
                EE   LFR M      P    ++    +     N  H +    +I  +     G 
Sbjct: 408 HMDRSEEASFLFREMLLSGIEPNYVTIASILPLCARVANLQHGKEFHCYILRRA----GF 463

Query: 232 NCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHN 291
              +   NS+++ Y R G++ EA+ LFD++  RDE+++TS+I GY   G+   A  LF  
Sbjct: 464 KDYLLLWNSLVDMYARSGKVLEAKRLFDSISRRDEVTYTSLIAGYGIQGEGREALKLFDE 523

Query: 292 MPDR----DAVAWTAMISGLVQNELFVEATYLFMEM-RAHGVPPLNATFSV---LFGAAG 343
           M  R    D V   A++S    + L  E   LF  M  A+G+ P    F+    LFG AG
Sbjct: 524 MKKRHIKPDHVTMVAVLSACSHSGLVTEGIKLFELMPSAYGIIPRLEHFACMVDLFGRAG 583



 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 54/188 (28%), Positives = 93/188 (49%)

Query: 272 MIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPL 331
           ++  Y +   +++A+ +  N      + W  +IS  V+N L  EA   + +M   G+ P 
Sbjct: 134 LVTFYTNFDLLADAHTITENSNILHPLPWNLLISSYVRNGLHGEALSAYKQMTHKGIRPD 193

Query: 332 NATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFS 391
             T+  +  A G   +I  G+++H  +  +    +L + N L+SMYAK G +  A  +F 
Sbjct: 194 KFTYPSVLKACGEKLDIAFGKKLHASINASCLGWNLFVHNSLVSMYAKTGELSTARCLFE 253

Query: 392 NMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSR 451
           NM+ RD VSWN+M+ G++  G+  E  ++F  M   G   N +T+  I   C  +G    
Sbjct: 254 NMLERDDVSWNTMISGYASKGMWKEAFELFGKMRVEGIELNIITWNTIAGGCVQSGNFEE 313

Query: 452 GWELFNAM 459
             EL + M
Sbjct: 314 ALELLSHM 321



 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 40/135 (29%), Positives = 73/135 (54%), Gaps = 9/135 (6%)

Query: 8   KSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEE 67
           K  ++   S +  Y++ G + EAK LF  + +R+ V+Y ++++G+   G   EA +LF+E
Sbjct: 464 KDYLLLWNSLVDMYARSGKVLEAKRLFDSISRRDEVTYTSLIAGYGIQGEGREALKLFDE 523

Query: 68  MPERNV----VSWTAMICGLADAGRVCEARKLFEEMPER-----NVVSWNSMVVGLIRNG 118
           M +R++    V+  A++   + +G V E  KLFE MP        +  +  MV    R G
Sbjct: 524 MKKRHIKPDHVTMVAVLSACSHSGLVTEGIKLFELMPSAYGIIPRLEHFACMVDLFGRAG 583

Query: 119 ELNEARKVFNSMPIK 133
            L++A+++   MP +
Sbjct: 584 LLHKAKEMITRMPYR 598


>gi|225447243|ref|XP_002272819.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g03540-like [Vitis vinifera]
          Length = 633

 Score =  276 bits (706), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 159/501 (31%), Positives = 267/501 (53%), Gaps = 25/501 (4%)

Query: 91  EARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECC- 149
           E RK+F+ +  ++V+SW SM+ G +R G+   + ++F  M    V      ++  ++ C 
Sbjct: 113 ETRKVFDGLFVKDVISWTSMISGYVRVGKPMNSLELFWKMLAYGVEPNAFTLSAVIKACS 172

Query: 150 -----MMGEAI--VLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTA 202
                 +G     V+     + N V  +++I  + R   +++   LF  +   + + WT+
Sbjct: 173 ELGDLKLGRIFHGVVLGRGFDSNYVIASALIDMHGRNCALDDARQLFDELLEPDAICWTS 232

Query: 203 MIGGFAWNGFHKESLLLFIEMK---GICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFD 259
           +I     N F  E+L  F  M+   G+C +G      +  +++      GRL++ + +  
Sbjct: 233 IISALTRNDFFDEALRFFYSMQRDHGMCPDGF-----TFGTVLTACGNLGRLKQGKEVHA 287

Query: 260 TVPVR----DEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVE 315
            V       + +  +S++D Y   G V  +  +F  MP +++V+W+A++ G  QN  F  
Sbjct: 288 KVITTGFCGNVVVESSLVDMYGKCGSVGESQRIFDRMPIKNSVSWSALLGGYCQNGDFKS 347

Query: 316 ATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLIS 375
              +F +M    +      F  +       A +  G+++HC  ++     D+I+E+ L+ 
Sbjct: 348 VIQIFRKMEKVDL----YCFGTILRTCAGLAAVRQGKEVHCQYIRKGGWRDVIVESALVD 403

Query: 376 MYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVT 435
           +YAKCG I+ A  IF  M  R+L++WNSM+ GF+ +G   E L++F  M++ G  P+ ++
Sbjct: 404 LYAKCGCIEYAQTIFDQMPVRNLITWNSMIGGFAQNGRGEEALRIFNQMVKEGIKPDYIS 463

Query: 436 FLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRL 495
           F+GIL ACSH GLV  G E F +M   Y I+ G EHY  M++LLGRAG ++EAE  +   
Sbjct: 464 FIGILFACSHRGLVDEGREYFISMTKDYGIKVGIEHYSCMVDLLGRAGLLEEAEILIETS 523

Query: 496 PFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEE 555
            F  D  +W ALLGAC  C  N EIAE  AKR++EL+P    ++V+L N+Y A GR  + 
Sbjct: 524 DFRDDSSLWAALLGACTTCT-NYEIAERIAKRVMELEPDYHLSYVLLANVYKAVGRWNDA 582

Query: 556 HKLRMDMGLKGVRKVPGCSWL 576
            ++R  M  +GV K+PG SW+
Sbjct: 583 LRIRRLMKDRGVNKMPGKSWI 603



 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 76/327 (23%), Positives = 146/327 (44%), Gaps = 82/327 (25%)

Query: 27  IDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEM-------PERNVVSWTAM 79
           +D+A+ LF  + + + + + +++S   +N    EA R F  M       P+         
Sbjct: 212 LDDARQLFDELLEPDAICWTSIISALTRNDFFDEALRFFYSMQRDHGMCPDGFTFGTVLT 271

Query: 80  ICGLADAGRVCEARKLFEEMPER----NVVSWNSMVVGLIRNGELNEARKVFNSMPIKNV 135
            CG  + GR+ + +++  ++       NVV  +S+V    + G + E++++F+ MPIKN 
Sbjct: 272 ACG--NLGRLKQGKEVHAKVITTGFCGNVVVESSLVDMYGKCGSVGESQRIFDRMPIKNS 329

Query: 136 ISWNAMIAGYVECCMMGEAIVLFEEMEE-------------------------------- 163
           +SW+A++ GY +       I +F +ME+                                
Sbjct: 330 VSWSALLGGYCQNGDFKSVIQIFRKMEKVDLYCFGTILRTCAGLAAVRQGKEVHCQYIRK 389

Query: 164 ---RNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLF 220
              R+V+  ++++  Y + G +E    +F +MP +N+++W +MIGGFA NG  +E+L +F
Sbjct: 390 GGWRDVIVESALVDLYAKCGCIEYAQTIFDQMPVRNLITWNSMIGGFAQNGRGEEALRIF 449

Query: 221 IEM---------------------KGICDNGN------------NCNVQSCNSMINGYIR 247
            +M                     +G+ D G                ++  + M++   R
Sbjct: 450 NQMVKEGIKPDYISFIGILFACSHRGLVDEGREYFISMTKDYGIKVGIEHYSCMVDLLGR 509

Query: 248 FGRLEEAQNLFDTVPVRDEIS-WTSMI 273
            G LEEA+ L +T   RD+ S W +++
Sbjct: 510 AGLLEEAEILIETSDFRDDSSLWAALL 536



 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 60/240 (25%), Positives = 106/240 (44%), Gaps = 45/240 (18%)

Query: 11  VVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPE 70
           VV  +S +  Y K G + E++ +F  MP +N VS++A+L G+ QNG      ++F +M +
Sbjct: 298 VVVESSLVDMYGKCGSVGESQRIFDRMPIKNSVSWSALLGGYCQNGDFKSVIQIFRKMEK 357

Query: 71  -----------------------------------RNVVSWTAMICGLADAGRVCEARKL 95
                                              R+V+  +A++   A  G +  A+ +
Sbjct: 358 VDLYCFGTILRTCAGLAAVRQGKEVHCQYIRKGGWRDVIVESALVDLYAKCGCIEYAQTI 417

Query: 96  FEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECC----MM 151
           F++MP RN+++WNSM+ G  +NG   EA ++FN M  + +        G +  C    ++
Sbjct: 418 FDQMPVRNLITWNSMIGGFAQNGRGEEALRIFNQMVKEGIKPDYISFIGILFACSHRGLV 477

Query: 152 GEAIVLFEEMEER-----NVVTWTSMISGYCRAGEVEEGYCLFRRMP-RKNVVSWTAMIG 205
            E    F  M +       +  ++ M+    RAG +EE   L      R +   W A++G
Sbjct: 478 DEGREYFISMTKDYGIKVGIEHYSCMVDLLGRAGLLEEAEILIETSDFRDDSSLWAALLG 537



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 43/148 (29%), Positives = 77/148 (52%), Gaps = 10/148 (6%)

Query: 11  VVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPE 70
           V+  ++ +  Y+K G I+ A+ +F  MP RN++++N+M+ GF QNGR  EA R+F +M +
Sbjct: 395 VIVESALVDLYAKCGCIEYAQTIFDQMPVRNLITWNSMIGGFAQNGRGEEALRIFNQMVK 454

Query: 71  RNV----VSWTAMICGLADAGRVCEARKLFEEMPER-----NVVSWNSMVVGLIRNGELN 121
             +    +S+  ++   +  G V E R+ F  M +       +  ++ MV  L R G L 
Sbjct: 455 EGIKPDYISFIGILFACSHRGLVDEGREYFISMTKDYGIKVGIEHYSCMVDLLGRAGLLE 514

Query: 122 EARKVFNSMPIKNVIS-WNAMIAGYVEC 148
           EA  +  +   ++  S W A++     C
Sbjct: 515 EAEILIETSDFRDDSSLWAALLGACTTC 542



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/147 (25%), Positives = 76/147 (51%), Gaps = 9/147 (6%)

Query: 40  RNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEM 99
           R+V+  +A++  + + G +  A+ +F++MP RN+++W +MI G A  GR  EA ++F +M
Sbjct: 393 RDVIVESALVDLYAKCGCIEYAQTIFDQMPVRNLITWNSMIGGFAQNGRGEEALRIFNQM 452

Query: 100 PERNV----VSWNSMVVGLIRNGELNEARKVFNSMPIKNVIS-----WNAMIAGYVECCM 150
            +  +    +S+  ++      G ++E R+ F SM     I      ++ M+       +
Sbjct: 453 VKEGIKPDYISFIGILFACSHRGLVDEGREYFISMTKDYGIKVGIEHYSCMVDLLGRAGL 512

Query: 151 MGEAIVLFEEMEERNVVTWTSMISGYC 177
           + EA +L E  + R+  +  + + G C
Sbjct: 513 LEEAEILIETSDFRDDSSLWAALLGAC 539


  Database: nr
    Posted date:  Mar 3, 2013 10:45 PM
  Number of letters in database: 999,999,864
  Number of sequences in database:  2,912,245
  
  Database: /local_scratch/syshi//blastdatabase/nr.01
    Posted date:  Mar 3, 2013 10:52 PM
  Number of letters in database: 999,999,666
  Number of sequences in database:  2,912,720
  
  Database: /local_scratch/syshi//blastdatabase/nr.02
    Posted date:  Mar 3, 2013 10:58 PM
  Number of letters in database: 999,999,938
  Number of sequences in database:  3,014,250
  
  Database: /local_scratch/syshi//blastdatabase/nr.03
    Posted date:  Mar 3, 2013 11:03 PM
  Number of letters in database: 999,999,780
  Number of sequences in database:  2,805,020
  
  Database: /local_scratch/syshi//blastdatabase/nr.04
    Posted date:  Mar 3, 2013 11:08 PM
  Number of letters in database: 999,999,551
  Number of sequences in database:  2,816,253
  
  Database: /local_scratch/syshi//blastdatabase/nr.05
    Posted date:  Mar 3, 2013 11:13 PM
  Number of letters in database: 999,999,897
  Number of sequences in database:  2,981,387
  
  Database: /local_scratch/syshi//blastdatabase/nr.06
    Posted date:  Mar 3, 2013 11:18 PM
  Number of letters in database: 999,999,649
  Number of sequences in database:  2,911,476
  
  Database: /local_scratch/syshi//blastdatabase/nr.07
    Posted date:  Mar 3, 2013 11:24 PM
  Number of letters in database: 999,999,452
  Number of sequences in database:  2,920,260
  
  Database: /local_scratch/syshi//blastdatabase/nr.08
    Posted date:  Mar 3, 2013 11:25 PM
  Number of letters in database: 64,230,274
  Number of sequences in database:  189,558
  
Lambda     K      H
   0.323    0.136    0.420 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,410,810,964
Number of Sequences: 23463169
Number of extensions: 387390667
Number of successful extensions: 1120692
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 7983
Number of HSP's successfully gapped in prelim test: 3396
Number of HSP's that attempted gapping in prelim test: 822550
Number of HSP's gapped (non-prelim): 74656
length of query: 600
length of database: 8,064,228,071
effective HSP length: 149
effective length of query: 451
effective length of database: 8,863,183,186
effective search space: 3997295616886
effective search space used: 3997295616886
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 80 (35.4 bits)