BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 007519
         (600 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1W3B|A Chain A, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
           Reveals Structural Similarities To Importin Alpha.
 pdb|1W3B|B Chain B, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
           Reveals Structural Similarities To Importin Alpha
          Length = 388

 Score = 32.0 bits (71), Expect = 0.98,   Method: Compositional matrix adjust.
 Identities = 33/118 (27%), Positives = 50/118 (42%), Gaps = 8/118 (6%)

Query: 442 ACSHAGLVSRGWE--LFNAMFDVYK----IQPG-PEHYVSMINLLGRAGKIKEAEE-FVL 493
           A  H  L    +E  L +   D Y+    +QP  P+ Y ++ N L   G + EAE+ +  
Sbjct: 237 AVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNT 296

Query: 494 RLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGR 551
            L   P H      L      +GN E A    ++ LE+ P  A AH  L ++    G+
Sbjct: 297 ALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGK 354


>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
           Tpr Motif
 pdb|1NA0|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
           Tpr Motif
          Length = 125

 Score = 30.8 bits (68), Expect = 2.4,   Method: Composition-based stats.
 Identities = 27/93 (29%), Positives = 44/93 (47%), Gaps = 3/93 (3%)

Query: 465 IQPG--PEHYVSMINLLGRAGKIKEAEEFVLR-LPFEPDHRIWGALLGACGFCEGNAEIA 521
           + PG   E + ++ N   + G   EA E+  + L  +P++      LG   + +G+ + A
Sbjct: 3   MDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEA 62

Query: 522 EHAAKRLLELDPLNAPAHVVLCNIYAASGRHVE 554
               ++ LELDP NA A   L N Y   G + E
Sbjct: 63  IEYYQKALELDPNNAEAWYNLGNAYYKQGDYDE 95


>pdb|2HGZ|A Chain A, Crystal Structure Of A P-Benzoyl-L-Phenylalanyl-Trna
           Synthetase
          Length = 306

 Score = 29.3 bits (64), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 18/71 (25%), Positives = 35/71 (49%), Gaps = 5/71 (7%)

Query: 35  QLMPQRNVVSYNAMLSGFLQNGRLSEARRLF---EEMPERNVVSWTAMIC--GLADAGRV 89
           +L+P++ V+ +N +L+G    G++S ++  F   ++ PE          C  G+ +   +
Sbjct: 181 ELLPKKVVMIHNPVLTGLDGEGKMSSSKGNFIAVDDSPEEIRAKIKKAYCPAGVVEGNPI 240

Query: 90  CEARKLFEEMP 100
            E  K F E P
Sbjct: 241 MEIAKYFLEYP 251


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.136    0.420 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,860,626
Number of Sequences: 62578
Number of extensions: 725580
Number of successful extensions: 1461
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1459
Number of HSP's gapped (non-prelim): 5
length of query: 600
length of database: 14,973,337
effective HSP length: 104
effective length of query: 496
effective length of database: 8,465,225
effective search space: 4198751600
effective search space used: 4198751600
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 54 (25.4 bits)