BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007519
(600 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P0C7R0|PPR69_ARATH Pentatricopeptide repeat-containing protein At1g32415,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E56 PE=2
SV=1
Length = 761
Score = 640 bits (1651), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 330/664 (49%), Positives = 445/664 (67%), Gaps = 75/664 (11%)
Query: 11 VVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPE 70
VV+ TS ++KY+K G++DEA+ LF++MP+RN+V+ NAML+G+++ R++EA LF EMP
Sbjct: 77 VVYWTSLLSKYAKTGYLDEARVLFEVMPERNIVTCNAMLTGYVKCRRMNEAWTLFREMP- 135
Query: 71 RNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSM 130
+NVVSWT M+ L D GR +A +LF+EMPERNVVSWN++V GLIRNG++ +A++VF++M
Sbjct: 136 KNVVSWTVMLTALCDDGRSEDAVELFDEMPERNVVSWNTLVTGLIRNGDMEKAKQVFDAM 195
Query: 131 PIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTS------------------- 171
P ++V+SWNAMI GY+E M EA +LF +M E+NVVTWTS
Sbjct: 196 PSRDVVSWNAMIKGYIENDGMEEAKLLFGDMSEKNVVTWTSMVYGYCRYGDVREAYRLFC 255
Query: 172 ------------MISGYCRAGEVEEGYCLFRRMPR---------KNVVSWTAMIGGFA-- 208
MISG+ E LF M + + ++S GG
Sbjct: 256 EMPERNIVSWTAMISGFAWNELYREALMLFLEMKKDVDAVSPNGETLISLAYACGGLGVE 315
Query: 209 ----------------W-----NGFHKESLLLFIEMKGICDNGNNC-----NVQSCNSMI 242
W +G +SL+ G+ + + ++QSCN +I
Sbjct: 316 FRRLGEQLHAQVISNGWETVDHDGRLAKSLVHMYASSGLIASAQSLLNESFDLQSCNIII 375
Query: 243 NGYIRFGRLEEAQNLFDTVP-VRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWT 301
N Y++ G LE A+ LF+ V + D++SWTSMIDGYL G VS A+ LF + D+D V WT
Sbjct: 376 NRYLKNGDLERAETLFERVKSLHDKVSWTSMIDGYLEAGDVSRAFGLFQKLHDKDGVTWT 435
Query: 302 AMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKT 361
MISGLVQNELF EA L +M G+ PLN+T+SVL +AGAT+N+D G+ IHCV+ KT
Sbjct: 436 VMISGLVQNELFAEAASLLSDMVRCGLKPLNSTYSVLLSSAGATSNLDQGKHIHCVIAKT 495
Query: 362 ES--ESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLK 419
+ + DLIL+N L+SMYAKCG I++AY IF+ MV +D VSWNSM+MG SHHGLA++ L
Sbjct: 496 TACYDPDLILQNSLVSMYAKCGAIEDAYEIFAKMVQKDTVSWNSMIMGLSHHGLADKALN 555
Query: 420 VFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLL 479
+F+ ML+SG PNSVTFLG+LSACSH+GL++RG ELF AM + Y IQPG +HY+SMI+LL
Sbjct: 556 LFKEMLDSGKKPNSVTFLGVLSACSHSGLITRGLELFKAMKETYSIQPGIDHYISMIDLL 615
Query: 480 GRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFC--EGNAE-IAEHAAKRLLELDPLNA 536
GRAGK+KEAEEF+ LPF PDH ++GALLG CG + +AE IAE AA RLLELDP+NA
Sbjct: 616 GRAGKLKEAEEFISALPFTPDHTVYGALLGLCGLNWRDKDAEGIAERAAMRLLELDPVNA 675
Query: 537 PAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVA 596
P HV LCN+YA GRH E ++R +MG+KGV+K PGCSW++ NG +FLSGDK ++ A
Sbjct: 676 PGHVALCNVYAGLGRHDMEKEMRKEMGIKGVKKTPGCSWVVVNGRANVFLSGDKSASEAA 735
Query: 597 EILL 600
+++L
Sbjct: 736 QMVL 739
Score = 183 bits (464), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 137/442 (30%), Positives = 220/442 (49%), Gaps = 49/442 (11%)
Query: 109 SMVVGLIRNGELNEARKVFNSMP----IKNVISWNAMIAGYVECCMMGEAIVLFEEMEER 164
++++ + G L AR + + +P I V+ W ++++ Y + + EA VLFE M ER
Sbjct: 47 ALILRRLSEGGLVHARHLLDKIPQRGSINRVVYWTSLLSKYAKTGYLDEARVLFEVMPER 106
Query: 165 NVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEM- 223
N+VT +M++GY + + E + LFR MP KNVVSWT M+ +G ++++ LF EM
Sbjct: 107 NIVTCNAMLTGYVKCRRMNEAWTLFREMP-KNVVSWTVMLTALCDDGRSEDAVELFDEMP 165
Query: 224 -----------KGICDNGN------------NCNVQSCNSMINGYIRFGRLEEAQNLFDT 260
G+ NG+ + +V S N+MI GYI +EEA+ LF
Sbjct: 166 ERNVVSWNTLVTGLIRNGDMEKAKQVFDAMPSRDVVSWNAMIKGYIENDGMEEAKLLFGD 225
Query: 261 VPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLF 320
+ ++ ++WTSM+ GY G V AY LF MP+R+ V+WTAMISG NEL+ EA LF
Sbjct: 226 MSEKNVVTWTSMVYGYCRYGDVREAYRLFCEMPERNIVSWTAMISGFAWNELYREALMLF 285
Query: 321 MEMR--AHGVPPLNATF-SVLFGAAGATANI-DLGRQIHCVLMKTESES---DLILENCL 373
+EM+ V P T S+ + G LG Q+H ++ E+ D L L
Sbjct: 286 LEMKKDVDAVSPNGETLISLAYACGGLGVEFRRLGEQLHAQVISNGWETVDHDGRLAKSL 345
Query: 374 ISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNS 433
+ MYA G+I +A ++ + S DL S N ++ + +G +FE + + +
Sbjct: 346 VHMYASSGLIASAQSLLNE--SFDLQSCNIIINRYLKNGDLERAETLFERV---KSLHDK 400
Query: 434 VTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFV- 492
V++ ++ AG VSR + LF + D + + MI+ L + EA +
Sbjct: 401 VSWTSMIDGYLEAGDVSRAFGLFQKLHDKDGVT-----WTVMISGLVQNELFAEAASLLS 455
Query: 493 --LRLPFEPDHRIWGALLGACG 512
+R +P + + LL + G
Sbjct: 456 DMVRCGLKPLNSTYSVLLSSAG 477
>sp|Q9SY02|PP301_ARATH Pentatricopeptide repeat-containing protein At4g02750
OS=Arabidopsis thaliana GN=PCMP-H24 PE=3 SV=1
Length = 781
Score = 469 bits (1208), Expect = e-131, Method: Compositional matrix adjust.
Identities = 243/614 (39%), Positives = 360/614 (58%), Gaps = 39/614 (6%)
Query: 17 SITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSW 76
+I+ Y + G +EA +F+ MP+ + VSYN M+SG+L+NG AR+LF+EMPER++VSW
Sbjct: 70 AISSYMRTGRCNEALRVFKRMPRWSSVSYNGMISGYLRNGEFELARKLFDEMPERDLVSW 129
Query: 77 TAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVI 136
MI G + +AR+LFE MPER+V SWN+M+ G +NG +++AR VF+ MP KN +
Sbjct: 130 NVMIKGYVRNRNLGKARELFEIMPERDVCSWNTMLSGYAQNGCVDDARSVFDRMPEKNDV 189
Query: 137 SWNAMIAGYVECCMMGEAIVLFEEMEE-------------------------------RN 165
SWNA+++ YV+ M EA +LF+ E R+
Sbjct: 190 SWNALLSAYVQNSKMEEACMLFKSRENWALVSWNCLLGGFVKKKKIVEARQFFDSMNVRD 249
Query: 166 VVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKG 225
VV+W ++I+GY ++G+++E LF P ++V +WTAM+ G+ N +E+ LF +M
Sbjct: 250 VVSWNTIITGYAQSGKIDEARQLFDESPVQDVFTWTAMVSGYIQNRMVEEARELFDKMP- 308
Query: 226 ICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNA 285
N S N+M+ GY++ R+E A+ LFD +P R+ +W +MI GY G++S A
Sbjct: 309 ------ERNEVSWNAMLAGYVQGERMEMAKELFDVMPCRNVSTWNTMITGYAQCGKISEA 362
Query: 286 YYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGAT 345
LF MP RD V+W AMI+G Q+ EA LF++M G ++FS
Sbjct: 363 KNLFDKMPKRDPVSWAAMIAGYSQSGHSFEALRLFVQMEREGGRLNRSSFSSALSTCADV 422
Query: 346 ANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMV 405
++LG+Q+H L+K E+ + N L+ MY KCG I+ A ++F M +D+VSWN+M+
Sbjct: 423 VALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDLFKEMAGKDIVSWNTMI 482
Query: 406 MGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKI 465
G+S HG L+ FESM G P+ T + +LSACSH GLV +G + F M Y +
Sbjct: 483 AGYSRHGFGEVALRFFESMKREGLKPDDATMVAVLSACSHTGLVDKGRQYFYTMTQDYGV 542
Query: 466 QPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAA 525
P +HY M++LLGRAG +++A + +PFEPD IWG LLGA GN E+AE AA
Sbjct: 543 MPNSQHYACMVDLLGRAGLLEDAHNLMKNMPFEPDAAIWGTLLGA-SRVHGNTELAETAA 601
Query: 526 KRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMF 585
++ ++P N+ +V+L N+YA+SGR + KLR+ M KGV+KVPG SW+ F
Sbjct: 602 DKIFAMEPENSGMYVLLSNLYASSGRWGDVGKLRVRMRDKGVKKVPGYSWIEIQNKTHTF 661
Query: 586 LSGDKIPAQVAEIL 599
GD+ + EI
Sbjct: 662 SVGDEFHPEKDEIF 675
Score = 224 bits (571), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 140/476 (29%), Positives = 231/476 (48%), Gaps = 106/476 (22%)
Query: 7 PKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEA----- 61
P+ V + ++ Y++ G +D+A+++F MP++N VS+NA+LS ++QN ++ EA
Sbjct: 153 PERDVCSWNTMLSGYAQNGCVDDARSVFDRMPEKNDVSWNALLSAYVQNSKMEEACMLFK 212
Query: 62 --------------------------RRLFEEMPERNVVSWTAMICGLADAGRVCEARKL 95
R+ F+ M R+VVSW +I G A +G++ EAR+L
Sbjct: 213 SRENWALVSWNCLLGGFVKKKKIVEARQFFDSMNVRDVVSWNTIITGYAQSGKIDEARQL 272
Query: 96 FEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAI 155
F+E P ++V +W +MV G I+N + EAR++F+ MP +N +SWNAM+AGYV+ M A
Sbjct: 273 FDESPVQDVFTWTAMVSGYIQNRMVEEARELFDKMPERNEVSWNAMLAGYVQGERMEMAK 332
Query: 156 VLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKE 215
LF+ M RNV TW +MI+GY + G++ E LF +MP+++ VSW AMI G++ +G E
Sbjct: 333 ELFDVMPCRNVSTWNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSFE 392
Query: 216 SLLLFIEMKGICDNGNNCNVQSC--------------------------------NSMIN 243
+L LF++M+ N + S N+++
Sbjct: 393 ALRLFVQMEREGGRLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLL 452
Query: 244 GYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAM 303
Y + G +EEA +LF + +D +SW +MI GY G
Sbjct: 453 MYCKCGSIEEANDLFKEMAGKDIVSWNTMIAGYSRHG----------------------- 489
Query: 304 ISGLVQNELFVEATYLFME-MRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTE 362
F E F E M+ G+ P +AT + A T +D GRQ T
Sbjct: 490 ---------FGEVALRFFESMKREGLKPDDATMVAVLSACSHTGLVDKGRQ----YFYTM 536
Query: 363 SESDLILEN-----CLISMYAKCGVIDNAYNIFSNM-VSRDLVSWNSMVMGFSHHG 412
++ ++ N C++ + + G++++A+N+ NM D W +++ HG
Sbjct: 537 TQDYGVMPNSQHYACMVDLLGRAGLLEDAHNLMKNMPFEPDAAIWGTLLGASRVHG 592
Score = 104 bits (260), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 88/364 (24%), Positives = 158/364 (43%), Gaps = 45/364 (12%)
Query: 232 NCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHN 291
+ +++ N I+ Y+R GR EA +F +P +S+ MI GYL G+ A LF
Sbjct: 61 DSDIKEWNVAISSYMRTGRCNEALRVFKRMPRWSSVSYNGMISGYLRNGEFELARKLFDE 120
Query: 292 MPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLG 351
MP+RD V+W MI G V+N +A LF M V +++ + +D
Sbjct: 121 MPERDLVSWNVMIKGYVRNRNLGKARELFEIMPERDV----CSWNTMLSGYAQNGCVDDA 176
Query: 352 RQIH---------------------------CVLMKTESESDLILENCLISMYAKCGVID 384
R + C+L K+ L+ NCL+ + K I
Sbjct: 177 RSVFDRMPEKNDVSWNALLSAYVQNSKMEEACMLFKSRENWALVSWNCLLGGFVKKKKIV 236
Query: 385 NAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACS 444
A F +M RD+VSWN+++ G++ G +E ++F+ ES + T+ ++S
Sbjct: 237 EARQFFDSMNVRDVVSWNTIITGYAQSGKIDEARQLFD---ESPVQ-DVFTWTAMVSGYI 292
Query: 445 HAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIW 504
+V ELF+ M + ++ + +M+ + +++ A+E +P + W
Sbjct: 293 QNRMVEEARELFDKMPERNEVS-----WNAMLAGYVQGERMEMAKELFDVMPCR-NVSTW 346
Query: 505 GALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGL 564
++ C G A++ ++ + DP++ A + Y+ SG E +L + M
Sbjct: 347 NTMITGYAQC-GKISEAKNLFDKMPKRDPVSWAAMIA---GYSQSGHSFEALRLFVQMER 402
Query: 565 KGVR 568
+G R
Sbjct: 403 EGGR 406
>sp|Q56XI1|PPR25_ARATH Pentatricopeptide repeat-containing protein At1g09410
OS=Arabidopsis thaliana GN=PCMP-H18 PE=2 SV=2
Length = 705
Score = 419 bits (1078), Expect = e-116, Method: Compositional matrix adjust.
Identities = 208/572 (36%), Positives = 344/572 (60%), Gaps = 9/572 (1%)
Query: 18 ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWT 77
IT S+ G I EA+ LF +++ S+N+M++G+ N +AR+LF+EMP+RN++SW
Sbjct: 24 ITHLSRIGKIHEARKLFDSCDSKSISSWNSMVAGYFANLMPRDARKLFDEMPDRNIISWN 83
Query: 78 AMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVIS 137
++ G G + EARK+F+ MPERNVVSW ++V G + NG+++ A +F MP KN +S
Sbjct: 84 GLVSGYMKNGEIDEARKVFDLMPERNVVSWTALVKGYVHNGKVDVAESLFWKMPEKNKVS 143
Query: 138 WNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNV 197
W M+ G+++ + +A L+E + +++ + TSMI G C+ G V+E +F M ++V
Sbjct: 144 WTVMLIGFLQDGRIDDACKLYEMIPDKDNIARTSMIHGLCKEGRVDEAREIFDEMSERSV 203
Query: 198 VSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNL 257
++WT M+ G+ N ++ +F M + S SM+ GY++ GR+E+A+ L
Sbjct: 204 ITWTTMVTGYGQNNRVDDARKIFDVMPEKTE-------VSWTSMLMGYVQNGRIEDAEEL 256
Query: 258 FDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEAT 317
F+ +PV+ I+ +MI G G+++ A +F +M +R+ +W +I +N +EA
Sbjct: 257 FEVMPVKPVIACNAMISGLGQKGEIAKARRVFDSMKERNDASWQTVIKIHERNGFELEAL 316
Query: 318 YLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMY 377
LF+ M+ GV P T + + A++ G+Q+H L++ + + D+ + + L++MY
Sbjct: 317 DLFILMQKQGVRPTFPTLISILSVCASLASLHHGKQVHAQLVRCQFDVDVYVASVLMTMY 376
Query: 378 AKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESG-THPNSVTF 436
KCG + + IF S+D++ WNS++ G++ HGL E LKVF M SG T PN VTF
Sbjct: 377 IKCGELVKSKLIFDRFPSKDIIMWNSIISGYASHGLGEEALKVFCEMPLSGSTKPNEVTF 436
Query: 437 LGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLP 496
+ LSACS+AG+V G +++ +M V+ ++P HY M+++LGRAG+ EA E + +
Sbjct: 437 VATLSACSYAGMVEEGLKIYESMESVFGVKPITAHYACMVDMLGRAGRFNEAMEMIDSMT 496
Query: 497 FEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEH 556
EPD +WG+LLGAC ++AE AK+L+E++P N+ +++L N+YA+ GR +
Sbjct: 497 VEPDAAVWGSLLGACR-THSQLDVAEFCAKKLIEIEPENSGTYILLSNMYASQGRWADVA 555
Query: 557 KLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSG 588
+LR M + VRK PGCSW + F G
Sbjct: 556 ELRKLMKTRLVRKSPGCSWTEVENKVHAFTRG 587
Score = 197 bits (501), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 123/406 (30%), Positives = 201/406 (49%), Gaps = 69/406 (16%)
Query: 7 PKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFE 66
P ++ ++ Y K G IDEA+ +F LMP+RNVVS+ A++ G++ NG++ A LF
Sbjct: 75 PDRNIISWNGLVSGYMKNGEIDEARKVFDLMPERNVVSWTALVKGYVHNGKVDVAESLFW 134
Query: 67 EMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKV 126
+MPE+N VSWT M+ G GR+ +A KL+E +P+++ ++ SM+ GL + G ++EAR++
Sbjct: 135 KMPEKNKVSWTVMLIGFLQDGRIDDACKLYEMIPDKDNIARTSMIHGLCKEGRVDEAREI 194
Query: 127 FNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGY 186
F+ M ++VI+W M+ GY + + +A +F+ M E+ V+WTSM+ GY + G +E+
Sbjct: 195 FDEMSERSVITWTTMVTGYGQNNRVDDARKIFDVMPEKTEVSWTSMLMGYVQNGRIEDAE 254
Query: 187 CLFRRMPRKNVVSWTAMIGGF----------------------AW---------NGFHKE 215
LF MP K V++ AMI G +W NGF E
Sbjct: 255 ELFEVMPVKPVIACNAMISGLGQKGEIAKARRVFDSMKERNDASWQTVIKIHERNGFELE 314
Query: 216 SLLLFIEMK---------------GIC------DNGNNCNVQ-----------SCNSMIN 243
+L LFI M+ +C +G + Q + ++
Sbjct: 315 ALDLFILMQKQGVRPTFPTLISILSVCASLASLHHGKQVHAQLVRCQFDVDVYVASVLMT 374
Query: 244 GYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMP-----DRDAV 298
YI+ G L +++ +FD P +D I W S+I GY S G A +F MP + V
Sbjct: 375 MYIKCGELVKSKLIFDRFPSKDIIMWNSIISGYASHGLGEEALKVFCEMPLSGSTKPNEV 434
Query: 299 AWTAMISGLVQNELFVEATYLFMEMRA-HGVPPLNATFSVLFGAAG 343
+ A +S + E ++ M + GV P+ A ++ + G
Sbjct: 435 TFVATLSACSYAGMVEEGLKIYESMESVFGVKPITAHYACMVDMLG 480
Score = 91.7 bits (226), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 69/279 (24%), Positives = 117/279 (41%), Gaps = 40/279 (14%)
Query: 237 SCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRD 296
+ N I R G++ EA+ LFD+ + SW SM+ GY + +A LF MPDR+
Sbjct: 19 TANVRITHLSRIGKIHEARKLFDSCDSKSISSWNSMVAGYFANLMPRDARKLFDEMPDRN 78
Query: 297 AVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIH- 355
++W ++SG ++N EA +F M V +++ L +D+ +
Sbjct: 79 IISWNGLVSGYMKNGEIDEARKVFDLMPERNV----VSWTALVKGYVHNGKVDVAESLFW 134
Query: 356 --------------------------CVLMKTESESDLILENCLISMYAKCGVIDNAYNI 389
C L + + D I +I K G +D A I
Sbjct: 135 KMPEKNKVSWTVMLIGFLQDGRIDDACKLYEMIPDKDNIARTSMIHGLCKEGRVDEAREI 194
Query: 390 FSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLV 449
F M R +++W +MV G+ + ++ K+F+ M E V++ +L G +
Sbjct: 195 FDEMSERSVITWTTMVTGYGQNNRVDDARKIFDVMPEK----TEVSWTSMLMGYVQNGRI 250
Query: 450 SRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEA 488
ELF M ++P +MI+ LG+ G+I +A
Sbjct: 251 EDAEELFEVM----PVKPVIACN-AMISGLGQKGEIAKA 284
>sp|Q9FXB9|PPR84_ARATH Pentatricopeptide repeat-containing protein At1g56690,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H69 PE=2
SV=1
Length = 704
Score = 414 bits (1063), Expect = e-114, Method: Compositional matrix adjust.
Identities = 216/585 (36%), Positives = 335/585 (57%), Gaps = 8/585 (1%)
Query: 4 RNHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARR 63
R + S V+ + I++ S+ G I+EA+ F + + + S+N+++SG+ NG EAR+
Sbjct: 10 RTYLTSTGVNCSFEISRLSRIGKINEARKFFDSLQFKAIGSWNSIVSGYFSNGLPKEARQ 69
Query: 64 LFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEA 123
LF+EM ERNVVSW ++ G + EAR +FE MPERNVVSW +MV G ++ G + EA
Sbjct: 70 LFDEMSERNVVSWNGLVSGYIKNRMIVEARNVFELMPERNVVSWTAMVKGYMQEGMVGEA 129
Query: 124 RKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVE 183
+F MP +N +SW M G ++ + +A L++ M ++VV T+MI G CR G V+
Sbjct: 130 ESLFWRMPERNEVSWTVMFGGLIDDGRIDKARKLYDMMPVKDVVASTNMIGGLCREGRVD 189
Query: 184 EGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMIN 243
E +F M +NVV+WT MI G+ N + LF M + S SM+
Sbjct: 190 EARLIFDEMRERNVVTWTTMITGYRQNNRVDVARKLFEVMPEKTE-------VSWTSMLL 242
Query: 244 GYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAM 303
GY GR+E+A+ F+ +P++ I+ +MI G+ VG++S A +F M DRD W M
Sbjct: 243 GYTLSGRIEDAEEFFEVMPMKPVIACNAMIVGFGEVGEISKARRVFDLMEDRDNATWRGM 302
Query: 304 ISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTES 363
I + +EA LF +M+ GV P + + A++ GRQ+H L++ +
Sbjct: 303 IKAYERKGFELEALDLFAQMQKQGVRPSFPSLISILSVCATLASLQYGRQVHAHLVRCQF 362
Query: 364 ESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFES 423
+ D+ + + L++MY KCG + A +F S+D++ WNS++ G++ HGL E LK+F
Sbjct: 363 DDDVYVASVLMTMYVKCGELVKAKLVFDRFSSKDIIMWNSIISGYASHGLGEEALKIFHE 422
Query: 424 MLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAG 483
M SGT PN VT + IL+ACS+AG + G E+F +M + + P EHY +++LGRAG
Sbjct: 423 MPSSGTMPNKVTLIAILTACSYAGKLEEGLEIFESMESKFCVTPTVEHYSCTVDMLGRAG 482
Query: 484 KIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLC 543
++ +A E + + +PD +WGALLGAC ++AE AAK+L E +P NA +V+L
Sbjct: 483 QVDKAMELIESMTIKPDATVWGALLGACK-THSRLDLAEVAAKKLFENEPDNAGTYVLLS 541
Query: 544 NIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSG 588
+I A+ + + +R +M V K PGCSW+ + MF G
Sbjct: 542 SINASRSKWGDVAVVRKNMRTNNVSKFPGCSWIEVGKKVHMFTRG 586
Score = 47.0 bits (110), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/163 (23%), Positives = 74/163 (45%), Gaps = 18/163 (11%)
Query: 352 RQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHH 411
+++ +L +T S + + IS ++ G I+ A F ++ + + SWNS+V G+ +
Sbjct: 2 KRLKLILRRTYLTSTGVNCSFEISRLSRIGKINEARKFFDSLQFKAIGSWNSIVSGYFSN 61
Query: 412 GLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEH 471
GL E ++F+ M E N V++ G++S ++ +F M PE
Sbjct: 62 GLPKEARQLFDEMSER----NVVSWNGLVSGYIKNRMIVEARNVFELM---------PER 108
Query: 472 ----YVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGA 510
+ +M+ + G + EAE R+P E + W + G
Sbjct: 109 NVVSWTAMVKGYMQEGMVGEAESLFWRMP-ERNEVSWTVMFGG 150
>sp|O64766|PP185_ARATH Pentatricopeptide repeat-containing protein At2g35030,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E15 PE=2
SV=1
Length = 627
Score = 405 bits (1040), Expect = e-112, Method: Compositional matrix adjust.
Identities = 210/543 (38%), Positives = 327/543 (60%), Gaps = 12/543 (2%)
Query: 56 GRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPER-NVVSWNSMVVGL 114
G+++EAR+LF+ +PER+VV+WT +I G G + EAR+LF+ + R NVV+W +MV G
Sbjct: 60 GKIAEARKLFDGLPERDVVTWTHVITGYIKLGDMREARELFDRVDSRKNVVTWTAMVSGY 119
Query: 115 IRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMIS 174
+R+ +L+ A +F MP +NV+SWN MI GY + + +A+ LF+EM ERN+V+W SM+
Sbjct: 120 LRSKQLSIAEMLFQEMPERNVVSWNTMIDGYAQSGRIDKALELFDEMPERNIVSWNSMVK 179
Query: 175 GYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCN 234
+ G ++E LF RMPR++VVSWTAM+ G A NG E+ LF D N
Sbjct: 180 ALVQRGRIDEAMNLFERMPRRDVVSWTAMVDGLAKNGKVDEARRLF-------DCMPERN 232
Query: 235 VQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPD 294
+ S N+MI GY + R++EA LF +P RD SW +MI G++ +++ A LF MP+
Sbjct: 233 IISWNAMITGYAQNNRIDEADQLFQVMPERDFASWNTMITGFIRNREMNKACGLFDRMPE 292
Query: 295 RDAVAWTAMISGLVQNELFVEATYLFMEM-RAHGVPPLNATFSVLFGAAGATANIDLGRQ 353
++ ++WT MI+G V+N+ EA +F +M R V P T+ + A A + G+Q
Sbjct: 293 KNVISWTTMITGYVENKENEEALNVFSKMLRDGSVKPNVGTYVSILSACSDLAGLVEGQQ 352
Query: 354 IHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSN--MVSRDLVSWNSMVMGFSHH 411
IH ++ K+ + + I+ + L++MY+K G + A +F N + RDL+SWNSM+ ++HH
Sbjct: 353 IHQLISKSVHQKNEIVTSALLNMYSKSGELIAARKMFDNGLVCQRDLISWNSMIAVYAHH 412
Query: 412 GLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEH 471
G E ++++ M + G P++VT+L +L ACSHAGLV +G E F + + EH
Sbjct: 413 GHGKEAIEMYNQMRKHGFKPSAVTYLNLLFACSHAGLVEKGMEFFKDLVRDESLPLREEH 472
Query: 472 YVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLEL 531
Y +++L GRAG++K+ F+ +GA+L AC IA+ K++LE
Sbjct: 473 YTCLVDLCGRAGRLKDVTNFINCDDARLSRSFYGAILSACN-VHNEVSIAKEVVKKVLET 531
Query: 532 DPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKI 591
+A +V++ NIYAA+G+ E ++RM M KG++K PGCSW+ +F+ GDK
Sbjct: 532 GSDDAGTYVLMSNIYAANGKREEAAEMRMKMKEKGLKKQPGCSWVKVGKQNHLFVVGDKS 591
Query: 592 PAQ 594
Q
Sbjct: 592 HPQ 594
Score = 258 bits (659), Expect = 9e-68, Method: Compositional matrix adjust.
Identities = 164/503 (32%), Positives = 263/503 (52%), Gaps = 51/503 (10%)
Query: 3 ERNHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEAR 62
+R + VV T+ ++ Y + + A+ LFQ MP+RNVVS+N M+ G+ Q+GR+ +A
Sbjct: 101 DRVDSRKNVVTWTAMVSGYLRSKQLSIAEMLFQEMPERNVVSWNTMIDGYAQSGRIDKAL 160
Query: 63 RLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNE 122
LF+EMPERN+VSW +M+ L GR+ EA LFE MP R+VVSW +MV GL +NG+++E
Sbjct: 161 ELFDEMPERNIVSWNSMVKALVQRGRIDEAMNLFERMPRRDVVSWTAMVDGLAKNGKVDE 220
Query: 123 ARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEV 182
AR++F+ MP +N+ISWNAMI GY + + EA LF+ M ER+ +W +MI+G+ R E+
Sbjct: 221 ARRLFDCMPERNIISWNAMITGYAQNNRIDEADQLFQVMPERDFASWNTMITGFIRNREM 280
Query: 183 EEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMI 242
+ LF RMP KNV+SWT MI G+ N ++E+L +F +M + D NV + S++
Sbjct: 281 NKACGLFDRMPEKNVISWTTMITGYVENKENEEALNVFSKM--LRDGSVKPNVGTYVSIL 338
Query: 243 NGYIRFGRLEEAQNLFD----TVPVRDEISWTSMIDGYLSVGQVSNAYYLFHN--MPDRD 296
+ L E Q + +V ++EI +++++ Y G++ A +F N + RD
Sbjct: 339 SACSDLAGLVEGQQIHQLISKSVHQKNEIVTSALLNMYSKSGELIAARKMFDNGLVCQRD 398
Query: 297 AVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHC 356
++W +MI+ + EA ++ +MR HG P T+ L A ++ G +
Sbjct: 399 LISWNSMIAVYAHHGHGKEAIEMYNQMRKHGFKPSAVTYLNLLFACSHAGLVEKGMEFFK 458
Query: 357 VLMKTESESDLILE----NCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHG 412
L++ ES L L CL+ + + G + + N ++ + + S +G
Sbjct: 459 DLVRDES---LPLREEHYTCLVDLCGRAGRLKDVTN---------FINCDDARLSRSFYG 506
Query: 413 LANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHY 472
ILSAC+ VS E+ + + G Y
Sbjct: 507 -------------------------AILSACNVHNEVSIAKEVVKKVLETGSDDAGT--Y 539
Query: 473 VSMINLLGRAGKIKEAEEFVLRL 495
V M N+ GK +EA E +++
Sbjct: 540 VLMSNIYAANGKREEAAEMRMKM 562
Score = 211 bits (538), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 121/339 (35%), Positives = 183/339 (53%), Gaps = 49/339 (14%)
Query: 114 LIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEER-NVVTWTSM 172
L + G++ EARK+F+ +P ++V++W +I GY++ M EA LF+ ++ R NVVTWT+M
Sbjct: 56 LCKVGKIAEARKLFDGLPERDVVTWTHVITGYIKLGDMREARELFDRVDSRKNVVTWTAM 115
Query: 173 ISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNN 232
+SGY R+ ++ LF+ MP +NVVSW MI G+A +G ++L LF EM
Sbjct: 116 VSGYLRSKQLSIAEMLFQEMPERNVVSWNTMIDGYAQSGRIDKALELFDEMP-------E 168
Query: 233 CNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNM 292
N+ S NSM+ ++ GR++EA NLF+ +P RD +SWT+M+DG G+V A LF M
Sbjct: 169 RNIVSWNSMVKALVQRGRIDEAMNLFERMPRRDVVSWTAMVDGLAKNGKVDEARRLFDCM 228
Query: 293 PDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGR 352
P+R+ ++W AMI+G QN EA LF M
Sbjct: 229 PERNIISWNAMITGYAQNNRIDEADQLFQVM----------------------------- 259
Query: 353 QIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHG 412
E D N +I+ + + ++ A +F M ++++SW +M+ G+ +
Sbjct: 260 ----------PERDFASWNTMITGFIRNREMNKACGLFDRMPEKNVISWTTMITGYVENK 309
Query: 413 LANETLKVFESMLESGT-HPNSVTFLGILSACSH-AGLV 449
E L VF ML G+ PN T++ ILSACS AGLV
Sbjct: 310 ENEEALNVFSKMLRDGSVKPNVGTYVSILSACSDLAGLV 348
Score = 108 bits (270), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 67/245 (27%), Positives = 121/245 (49%), Gaps = 13/245 (5%)
Query: 216 SLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDG 275
S+ LF ++ I + + V +I + G++ EA+ LFD +P RD ++WT +I G
Sbjct: 27 SVQLFNLVRSIYSSSSRPRVPQPEWLIGELCKVGKIAEARKLFDGLPERDVVTWTHVITG 86
Query: 276 YLSVGQVSNAYYLFHNMPDR-DAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNAT 334
Y+ +G + A LF + R + V WTAM+SG ++++ A LF EM V +
Sbjct: 87 YIKLGDMREARELFDRVDSRKNVVTWTAMVSGYLRSKQLSIAEMLFQEMPERNV----VS 142
Query: 335 FSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMV 394
++ + + ID + L E +++ N ++ + G ID A N+F M
Sbjct: 143 WNTMIDGYAQSGRIDKALE----LFDEMPERNIVSWNSMVKALVQRGRIDEAMNLFERMP 198
Query: 395 SRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWE 454
RD+VSW +MV G + +G +E ++F+ M E N +++ +++ + + +
Sbjct: 199 RRDVVSWTAMVDGLAKNGKVDEARRLFDCMPER----NIISWNAMITGYAQNNRIDEADQ 254
Query: 455 LFNAM 459
LF M
Sbjct: 255 LFQVM 259
>sp|Q9C8L6|PPR80_ARATH Pentatricopeptide repeat-containing protein At1g53600,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E63 PE=2
SV=2
Length = 717
Score = 404 bits (1037), Expect = e-111, Method: Compositional matrix adjust.
Identities = 230/663 (34%), Positives = 363/663 (54%), Gaps = 68/663 (10%)
Query: 3 ERNHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEAR 62
E + + S I+K+++ G + EA+A+F+ M R++VS+ AM+S + +NG++S+A
Sbjct: 42 ETTTTSTAIFQCNSQISKHARNGNLQEAEAIFRQMSNRSIVSWIAMISAYAENGKMSKAW 101
Query: 63 RLFEEMP--------------------------------ERNVVSWTAMICGLADAGRVC 90
++F+EMP E+N VS+ MI G AGR
Sbjct: 102 QVFDEMPVRVTTSYNAMITAMIKNKCDLGKAYELFCDIPEKNAVSYATMITGFVRAGRFD 161
Query: 91 EARKLFEEMPE--RNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVEC 148
EA L+ E P R+ V+ N ++ G +R G+ NEA +VF M +K V+S ++M+ GY +
Sbjct: 162 EAEFLYAETPVKFRDSVASNVLLSGYLRAGKWNEAVRVFQGMAVKEVVSCSSMVHGYCKM 221
Query: 149 CMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTA------ 202
+ +A LF+ M ERNV+TWT+MI GY +AG E+G+ LF RM ++ V +
Sbjct: 222 GRIVDARSLFDRMTERNVITWTAMIDGYFKAGFFEDGFGLFLRMRQEGDVKVNSNTLAVM 281
Query: 203 --------------MIGGFA------WNGFHKESLLLFI-------EMKGICDNGNNCNV 235
I G ++ F SL+ E K + N +
Sbjct: 282 FKACRDFVRYREGSQIHGLVSRMPLEFDLFLGNSLMSMYSKLGYMGEAKAVFGVMKNKDS 341
Query: 236 QSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDR 295
S NS+I G ++ ++ EA LF+ +P +D +SWT MI G+ G++S LF MP++
Sbjct: 342 VSWNSLITGLVQRKQISEAYELFEKMPGKDMVSWTDMIKGFSGKGEISKCVELFGMMPEK 401
Query: 296 DAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIH 355
D + WTAMIS V N + EA F +M V P + TFS + A + A++ G QIH
Sbjct: 402 DNITWTAMISAFVSNGYYEEALCWFHKMLQKEVCPNSYTFSSVLSATASLADLIEGLQIH 461
Query: 356 CVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLAN 415
++K +DL ++N L+SMY KCG ++AY IFS + ++VS+N+M+ G+S++G
Sbjct: 462 GRVVKMNIVNDLSVQNSLVSMYCKCGNTNDAYKIFSCISEPNIVSYNTMISGYSYNGFGK 521
Query: 416 ETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSM 475
+ LK+F + SG PN VTFL +LSAC H G V GW+ F +M Y I+PGP+HY M
Sbjct: 522 KALKLFSMLESSGKEPNGVTFLALLSACVHVGYVDLGWKYFKSMKSSYNIEPGPDHYACM 581
Query: 476 INLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLN 535
++LLGR+G + +A + +P +P +WG+LL A ++AE AAK+L+EL+P +
Sbjct: 582 VDLLGRSGLLDDASNLISTMPCKPHSGVWGSLLSASK-THLRVDLAELAAKKLIELEPDS 640
Query: 536 APAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQV 595
A +VVL +Y+ G++ + ++ K ++K PG SW++ G + FL+GD+ +
Sbjct: 641 ATPYVVLSQLYSIIGKNRDCDRIMNIKKSKRIKKDPGSSWIILKGEVHNFLAGDESQLNL 700
Query: 596 AEI 598
EI
Sbjct: 701 EEI 703
Score = 49.3 bits (116), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 69/143 (48%), Gaps = 11/143 (7%)
Query: 358 LMKTESESDLILE-NCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANE 416
++T + S I + N IS +A+ G + A IF M +R +VSW +M+ ++ +G ++
Sbjct: 40 FLETTTTSTAIFQCNSQISKHARNGNLQEAEAIFRQMSNRSIVSWIAMISAYAENGKMSK 99
Query: 417 TLKVFESM-LESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSM 475
+VF+ M + T N++ I + C + + +ELF + + + Y +M
Sbjct: 100 AWQVFDEMPVRVTTSYNAMITAMIKNKCD----LGKAYELFCDIPEKNAVS-----YATM 150
Query: 476 INLLGRAGKIKEAEEFVLRLPFE 498
I RAG+ EAE P +
Sbjct: 151 ITGFVRAGRFDEAEFLYAETPVK 173
>sp|O04590|PPR88_ARATH Pentatricopeptide repeat-containing protein At1g62260,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E10 PE=2
SV=1
Length = 656
Score = 403 bits (1036), Expect = e-111, Method: Compositional matrix adjust.
Identities = 221/591 (37%), Positives = 344/591 (58%), Gaps = 34/591 (5%)
Query: 11 VVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGR---LSEARRLFEE 67
V + I+ Y KR +++A+ LF +MP+R+VV++N M+SG++ G L EAR+LF+E
Sbjct: 71 TVTWNTMISGYVKRREMNQARKLFDVMPKRDVVTWNTMISGYVSCGGIRFLEEARKLFDE 130
Query: 68 MPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVF 127
MP R+ SW MI G A R+ EA LFE+MPERN VSW++M+ G +NGE++ A +F
Sbjct: 131 MPSRDSFSWNTMISGYAKNRRIGEALLLFEKMPERNAVSWSAMITGFCQNGEVDSAVVLF 190
Query: 128 NSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEM------EERNVVTWTSMISGYCRAGE 181
MP+K+ A++AG ++ + EA + + E V + ++I GY + G+
Sbjct: 191 RKMPVKDSSPLCALVAGLIKNERLSEAAWVLGQYGSLVSGREDLVYAYNTLIVGYGQRGQ 250
Query: 182 VEEGYCLFRRMPR---------------KNVVSWTAMIGGFAWNGFHKESLLLFIEMKGI 226
VE CLF ++P KNVVSW +MI + G + LLF +MK
Sbjct: 251 VEAARCLFDQIPDLCGDDHGGEFRERFCKNVVSWNSMIKAYLKVGDVVSARLLFDQMK-- 308
Query: 227 CDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAY 286
+ + S N+MI+GY+ R+E+A LF +P RD SW M+ GY SVG V A
Sbjct: 309 -----DRDTISWNTMIDGYVHVSRMEDAFALFSEMPNRDAHSWNMMVSGYASVGNVELAR 363
Query: 287 YLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATA 346
+ F P++ V+W ++I+ +N+ + EA LF+ M G P T + L A+
Sbjct: 364 HYFEKTPEKHTVSWNSIIAAYEKNKDYKEAVDLFIRMNIEGEKPDPHTLTSLLSASTGLV 423
Query: 347 NIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNM-VSRDLVSWNSMV 405
N+ LG Q+H +++KT D+ + N LI+MY++CG I + IF M + R++++WN+M+
Sbjct: 424 NLRLGMQMHQIVVKTVI-PDVPVHNALITMYSRCGEIMESRRIFDEMKLKREVITWNAMI 482
Query: 406 MGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKI 465
G++ HG A+E L +F SM +G +P+ +TF+ +L+AC+HAGLV F +M VYKI
Sbjct: 483 GGYAFHGNASEALNLFGSMKSNGIYPSHITFVSVLNACAHAGLVDEAKAQFVSMMSVYKI 542
Query: 466 QPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAA 525
+P EHY S++N+ G+ +EA + +PFEPD +WGALL AC N +A AA
Sbjct: 543 EPQMEHYSSLVNVTSGQGQFEEAMYIITSMPFEPDKTVWGALLDACRIY-NNVGLAHVAA 601
Query: 526 KRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWL 576
+ + L+P ++ +V+L N+YA G E ++RM+M K ++K G SW+
Sbjct: 602 EAMSRLEPESSTPYVLLYNMYADMGLWDEASQVRMNMESKRIKKERGSSWV 652
Score = 171 bits (432), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 121/425 (28%), Positives = 206/425 (48%), Gaps = 28/425 (6%)
Query: 7 PKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFE 66
P+ V ++ IT + + G +D A LF+ MP ++ A+++G ++N RLSEA +
Sbjct: 163 PERNAVSWSAMITGFCQNGEVDSAVVLFRKMPVKDSSPLCALVAGLIKNERLSEAAWVLG 222
Query: 67 EM------PERNVVSWTAMICGLADAGRVCEARKLFEEMPE---------------RNVV 105
+ E V ++ +I G G+V AR LF+++P+ +NVV
Sbjct: 223 QYGSLVSGREDLVYAYNTLIVGYGQRGQVEAARCLFDQIPDLCGDDHGGEFRERFCKNVV 282
Query: 106 SWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERN 165
SWNSM+ ++ G++ AR +F+ M ++ ISWN MI GYV M +A LF EM R+
Sbjct: 283 SWNSMIKAYLKVGDVVSARLLFDQMKDRDTISWNTMIDGYVHVSRMEDAFALFSEMPNRD 342
Query: 166 VVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKG 225
+W M+SGY G VE F + P K+ VSW ++I + N +KE++ LFI M
Sbjct: 343 AHSWNMMVSGYASVGNVELARHYFEKTPEKHTVSWNSIIAAYEKNKDYKEAVDLFIRMNI 402
Query: 226 ICDNGNNCNVQSCNSMINGYI--RFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVS 283
+ + + S S G + R G ++ Q + TV + D ++I Y G++
Sbjct: 403 EGEKPDPHTLTSLLSASTGLVNLRLG-MQMHQIVVKTV-IPDVPVHNALITMYSRCGEIM 460
Query: 284 NAYYLFHNMP-DRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAA 342
+ +F M R+ + W AMI G + EA LF M+++G+ P + TF + A
Sbjct: 461 ESRRIFDEMKLKREVITWNAMIGGYAFHGNASEALNLFGSMKSNGIYPSHITFVSVLNAC 520
Query: 343 GATANIDLGRQIHCVLMKT-ESESDLILENCLISMYAKCGVIDNAYNIFSNM-VSRDLVS 400
+D + +M + E + + L+++ + G + A I ++M D
Sbjct: 521 AHAGLVDEAKAQFVSMMSVYKIEPQMEHYSSLVNVTSGQGQFEEAMYIITSMPFEPDKTV 580
Query: 401 WNSMV 405
W +++
Sbjct: 581 WGALL 585
Score = 85.5 bits (210), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 59/208 (28%), Positives = 90/208 (43%), Gaps = 42/208 (20%)
Query: 236 QSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDR 295
++ N +N IR G + EA+++F+ + R+ ++W +MI GY+ +++ A LF MP R
Sbjct: 41 RATNKELNQMIRSGYIAEARDIFEKLEARNTVTWNTMISGYVKRREMNQARKLFDVMPKR 100
Query: 296 DAVAWTAMISGLVQN---ELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGR 352
D V W MISG V EA LF EM P +FS
Sbjct: 101 DVVTWNTMISGYVSCGGIRFLEEARKLFDEM------PSRDSFSW--------------- 139
Query: 353 QIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHG 412
N +IS YAK I A +F M R+ VSW++M+ GF +G
Sbjct: 140 ------------------NTMISGYAKNRRIGEALLLFEKMPERNAVSWSAMITGFCQNG 181
Query: 413 LANETLKVFESMLESGTHPNSVTFLGIL 440
+ + +F M + P G++
Sbjct: 182 EVDSAVVLFRKMPVKDSSPLCALVAGLI 209
Score = 43.9 bits (102), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 67/144 (46%), Gaps = 14/144 (9%)
Query: 379 KCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLG 438
+ G I A +IF + +R+ V+WN+M+ G+ N+ K+F+ M + + G
Sbjct: 52 RSGYIAEARDIFEKLEARNTVTWNTMISGYVKRREMNQARKLFDVMPKRDVVTWNTMISG 111
Query: 439 ILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYV--SMINLLGRAGKIKEAEEFVLRLP 496
+S C + +LF+ M P + + +MI+ + +I EA ++P
Sbjct: 112 YVS-CGGIRFLEEARKLFDEM-------PSRDSFSWNTMISGYAKNRRIGEALLLFEKMP 163
Query: 497 FEPDHRIWGALLGACGFCEGNAEI 520
E + W A++ GFC+ N E+
Sbjct: 164 -ERNAVSWSAMI--TGFCQ-NGEV 183
>sp|Q9SIT7|PP151_ARATH Pentatricopeptide repeat-containing protein At2g13600
OS=Arabidopsis thaliana GN=PCMP-E76 PE=3 SV=1
Length = 697
Score = 345 bits (885), Expect = 5e-94, Method: Compositional matrix adjust.
Identities = 190/600 (31%), Positives = 318/600 (53%), Gaps = 48/600 (8%)
Query: 46 NAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVV 105
N ++ + + G L + R++F++MP+RN+ +W +++ GL G + EA LF MPER+
Sbjct: 59 NRLIDAYSKCGSLEDGRQVFDKMPQRNIYTWNSVVTGLTKLGFLDEADSLFRSMPERDQC 118
Query: 106 SWNSMVVGLIRNGELNEARKVFNSMP---------------------------------- 131
+WNSMV G ++ EA F M
Sbjct: 119 TWNSMVSGFAQHDRCEEALCYFAMMHKEGFVLNEYSFASVLSACSGLNDMNKGVQVHSLI 178
Query: 132 -----IKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGY 186
+ +V +A++ Y +C + +A +F+EM +RNVV+W S+I+ + + G E
Sbjct: 179 AKSPFLSDVYIGSALVDMYSKCGNVNDAQRVFDEMGDRNVVSWNSLITCFEQNGPAVEAL 238
Query: 187 CLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKG--ICDNGNNCNVQSCNSMING 244
+F+ M V + ++ + E+ G + ++ ++ N+ ++
Sbjct: 239 DVFQMMLESRVEPDEVTLASVISACASLSAIKVGQEVHGRVVKNDKLRNDIILSNAFVDM 298
Query: 245 YIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMI 304
Y + R++EA+ +FD++P+R+ I+ TSMI GY A +F M +R+ V+W A+I
Sbjct: 299 YAKCSRIKEARFIFDSMPIRNVIAETSMISGYAMAASTKAARLMFTKMAERNVVSWNALI 358
Query: 305 SGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMK---- 360
+G QN EA LF ++ V P + +F+ + A A + LG Q H ++K
Sbjct: 359 AGYTQNGENEEALSLFCLLKRESVCPTHYSFANILKACADLAELHLGMQAHVHVLKHGFK 418
Query: 361 --TESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETL 418
+ E D+ + N LI MY KCG ++ Y +F M+ RD VSWN+M++GF+ +G NE L
Sbjct: 419 FQSGEEDDIFVGNSLIDMYVKCGCVEEGYLVFRKMMERDCVSWNAMIIGFAQNGYGNEAL 478
Query: 419 KVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINL 478
++F MLESG P+ +T +G+LSAC HAG V G F++M + + P +HY M++L
Sbjct: 479 ELFREMLESGEKPDHITMIGVLSACGHAGFVEEGRHYFSSMTRDFGVAPLRDHYTCMVDL 538
Query: 479 LGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPA 538
LGRAG ++EA+ + +P +PD IWG+LL AC N + ++ A++LLE++P N+
Sbjct: 539 LGRAGFLEEAKSMIEEMPMQPDSVIWGSLLAACKV-HRNITLGKYVAEKLLEVEPSNSGP 597
Query: 539 HVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
+V+L N+YA G+ + +R M +GV K PGCSW+ G +F+ DK + +I
Sbjct: 598 YVLLSNMYAELGKWEDVMNVRKSMRKEGVTKQPGCSWIKIQGHDHVFMVKDKSHPRKKQI 657
Score = 171 bits (434), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 143/510 (28%), Positives = 218/510 (42%), Gaps = 92/510 (18%)
Query: 7 PKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFE 66
P+ + S +T +K GF+DEA +LF+ MP+R+ ++N+M+SGF Q+ R EA F
Sbjct: 82 PQRNIYTWNSVVTGLTKLGFLDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEALCYFA 141
Query: 67 EMPERNVV-------SWTAMICGLAD--------------------------------AG 87
M + V S + GL D G
Sbjct: 142 MMHKEGFVLNEYSFASVLSACSGLNDMNKGVQVHSLIAKSPFLSDVYIGSALVDMYSKCG 201
Query: 88 RVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSM----------------- 130
V +A+++F+EM +RNVVSWNS++ +NG EA VF M
Sbjct: 202 NVNDAQRVFDEMGDRNVVSWNSLITCFEQNGPAVEALDVFQMMLESRVEPDEVTLASVIS 261
Query: 131 -----------------PIKN------VISWNAMIAGYVECCMMGEAIVLFEEMEERNVV 167
+KN +I NA + Y +C + EA +F+ M RNV+
Sbjct: 262 ACASLSAIKVGQEVHGRVVKNDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMPIRNVI 321
Query: 168 TWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMK--G 225
TSMISGY A + +F +M +NVVSW A+I G+ NG ++E+L LF +K
Sbjct: 322 AETSMISGYAMAASTKAARLMFTKMAERNVVSWNALIAGYTQNGENEEALSLFCLLKRES 381
Query: 226 ICDNGNN-CNV-QSCNSMINGYIRFGRLEEAQNL-----FDTVPVRDEISWTSMIDGYLS 278
+C + N+ ++C + + G L F + D S+ID Y+
Sbjct: 382 VCPTHYSFANILKACADLAE--LHLGMQAHVHVLKHGFKFQSGEEDDIFVGNSLIDMYVK 439
Query: 279 VGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVL 338
G V Y +F M +RD V+W AMI G QN EA LF EM G P + T +
Sbjct: 440 CGCVEEGYLVFRKMMERDCVSWNAMIIGFAQNGYGNEALELFREMLESGEKPDHITMIGV 499
Query: 339 FGAAGATANIDLGRQIHCVLMKTESESDLILE-NCLISMYAKCGVIDNAYNIFSNM-VSR 396
A G ++ GR + + + L C++ + + G ++ A ++ M +
Sbjct: 500 LSACGHAGFVEEGRHYFSSMTRDFGVAPLRDHYTCMVDLLGRAGFLEEAKSMIEEMPMQP 559
Query: 397 DLVSWNSMVMGFSHHGLANETLKVFESMLE 426
D V W S++ H V E +LE
Sbjct: 560 DSVIWGSLLAACKVHRNITLGKYVAEKLLE 589
Score = 60.8 bits (146), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 60/261 (22%), Positives = 108/261 (41%), Gaps = 57/261 (21%)
Query: 352 RQIHCVLMKTESESDLILENCLISMYAKC------------------------------- 380
R +H ++K+ +++ ++N LI Y+KC
Sbjct: 40 RYVHASVIKSGFSNEIFIQNRLIDAYSKCGSLEDGRQVFDKMPQRNIYTWNSVVTGLTKL 99
Query: 381 GVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGIL 440
G +D A ++F +M RD +WNSMV GF+ H E L F M + G N +F +L
Sbjct: 100 GFLDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEALCYFAMMHKEGFVLNEYSFASVL 159
Query: 441 SACSHAGLVSRGWELFNAMFDVYKIQPGPEHYV--SMINLLGRAGKIKEAEEFVLRLPFE 498
SACS +++G ++ + + K + Y+ +++++ + G + +A+ +
Sbjct: 160 SACSGLNDMNKGVQVHSL---IAKSPFLSDVYIGSALVDMYSKCGNVNDAQRVFDEM--- 213
Query: 499 PDHRI--WGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAA-------- 548
D + W +L+ E N E + L+ P V L ++ +A
Sbjct: 214 GDRNVVSWNSLITC---FEQNGPAVEALDVFQMMLESRVEPDEVTLASVISACASLSAIK 270
Query: 549 -----SGRHVEEHKLRMDMGL 564
GR V+ KLR D+ L
Sbjct: 271 VGQEVHGRVVKNDKLRNDIIL 291
>sp|Q9M4P3|PP316_ARATH Pentatricopeptide repeat-containing protein At4g16835,
mitochondrial OS=Arabidopsis thaliana GN=DYW10 PE=2 SV=3
Length = 656
Score = 341 bits (875), Expect = 9e-93, Method: Compositional matrix adjust.
Identities = 183/500 (36%), Positives = 288/500 (57%), Gaps = 10/500 (2%)
Query: 101 ERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYV-ECCMMGEAIVLFE 159
+ + N ++ +R+G+++ A +VF+ M KN I+WN+++ G + M EA LF+
Sbjct: 58 QDQIFPLNKIIARCVRSGDIDGALRVFHGMRAKNTITWNSLLIGISKDPSRMMEAHQLFD 117
Query: 160 EMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLL 219
E+ E + ++ M+S Y R E+ F RMP K+ SW MI G+A G +++ L
Sbjct: 118 EIPEPDTFSYNIMLSCYVRNVNFEKAQSFFDRMPFKDAASWNTMITGYARRGEMEKAREL 177
Query: 220 FIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSV 279
F M N S N+MI+GYI G LE+A + F PVR ++WT+MI GY+
Sbjct: 178 FYSMM-------EKNEVSWNAMISGYIECGDLEKASHFFKVAPVRGVVAWTAMITGYMKA 230
Query: 280 GQVSNAYYLFHNMP-DRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVL 338
+V A +F +M +++ V W AMISG V+N + LF M G+ P ++ S
Sbjct: 231 KKVELAEAMFKDMTVNKNLVTWNAMISGYVENSRPEDGLKLFRAMLEEGIRPNSSGLSSA 290
Query: 339 FGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDL 398
+ + LGRQIH ++ K+ +D+ LISMY KCG + +A+ +F M +D+
Sbjct: 291 LLGCSELSALQLGRQIHQIVSKSTLCNDVTALTSLISMYCKCGELGDAWKLFEVMKKKDV 350
Query: 399 VSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNA 458
V+WN+M+ G++ HG A++ L +F M+++ P+ +TF+ +L AC+HAGLV+ G F +
Sbjct: 351 VAWNAMISGYAQHGNADKALCLFREMIDNKIRPDWITFVAVLLACNHAGLVNIGMAYFES 410
Query: 459 MFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNA 518
M YK++P P+HY M++LLGRAGK++EA + + +PF P ++G LLGAC N
Sbjct: 411 MVRDYKVEPQPDHYTCMVDLLGRAGKLEEALKLIRSMPFRPHAAVFGTLLGACR-VHKNV 469
Query: 519 EIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMR 578
E+AE AA++LL+L+ NA +V L NIYA+ R + ++R M V KVPG SW+
Sbjct: 470 ELAEFAAEKLLQLNSQNAAGYVQLANIYASKNRWEDVARVRKRMKESNVVKVPGYSWIEI 529
Query: 579 NGGIQMFLSGDKIPAQVAEI 598
+ F S D+I ++ I
Sbjct: 530 RNKVHHFRSSDRIHPELDSI 549
Score = 172 bits (435), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 113/401 (28%), Positives = 190/401 (47%), Gaps = 51/401 (12%)
Query: 39 QRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLA-DAGRVCEARKLFE 97
Q + N +++ +++G + A R+F M +N ++W +++ G++ D R+ EA +LF+
Sbjct: 58 QDQIFPLNKIIARCVRSGDIDGALRVFHGMRAKNTITWNSLLIGISKDPSRMMEAHQLFD 117
Query: 98 EMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVL 157
E+PE + S+N M+ +RN +A+ F+ MP K+ SWN MI GY M +A L
Sbjct: 118 EIPEPDTFSYNIMLSCYVRNVNFEKAQSFFDRMPFKDAASWNTMITGYARRGEMEKAREL 177
Query: 158 FEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESL 217
F M E+N V+W +MISGY G++E+ F+ P + VV+WTAMI G+ + +
Sbjct: 178 FYSMMEKNEVSWNAMISGYIECGDLEKASHFFKVAPVRGVVAWTAMITGYMKAKKVELAE 237
Query: 218 LLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLF------------------- 258
+F +M N N+ + N+MI+GY+ R E+ LF
Sbjct: 238 AMFKDMTV------NKNLVTWNAMISGYVENSRPEDGLKLFRAMLEEGIRPNSSGLSSAL 291
Query: 259 --------------------DTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAV 298
+ D + TS+I Y G++ +A+ LF M +D V
Sbjct: 292 LGCSELSALQLGRQIHQIVSKSTLCNDVTALTSLISMYCKCGELGDAWKLFEVMKKKDVV 351
Query: 299 AWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVL 358
AW AMISG Q+ +A LF EM + + P TF + A +++G +
Sbjct: 352 AWNAMISGYAQHGNADKALCLFREMIDNKIRPDWITFVAVLLACNHAGLVNIGMAYFESM 411
Query: 359 M---KTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSR 396
+ K E + D C++ + + G ++ A + +M R
Sbjct: 412 VRDYKVEPQPDHY--TCMVDLLGRAGKLEEALKLIRSMPFR 450
Score = 168 bits (426), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 106/329 (32%), Positives = 168/329 (51%), Gaps = 18/329 (5%)
Query: 29 EAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGR 88
EA LF +P+ + SYN MLS +++N +A+ F+ MP ++ SW MI G A G
Sbjct: 111 EAHQLFDEIPEPDTFSYNIMLSCYVRNVNFEKAQSFFDRMPFKDAASWNTMITGYARRGE 170
Query: 89 VCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVEC 148
+ +AR+LF M E+N VSWN+M+ G I G+L +A F P++ V++W AMI GY++
Sbjct: 171 MEKARELFYSMMEKNEVSWNAMISGYIECGDLEKASHFFKVAPVRGVVAWTAMITGYMKA 230
Query: 149 CMMGEAIVLFEEME-ERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGF 207
+ A +F++M +N+VTW +MISGY E+G LFR M + + ++ +
Sbjct: 231 KKVELAEAMFKDMTVNKNLVTWNAMISGYVENSRPEDGLKLFRAMLEEGIRPNSSGLSSA 290
Query: 208 AWNGFHKESLLLFIEMKGICDNGNNCN-VQSCNSMINGYIRFGRLEEAQNLFDTVPVRDE 266
+L L ++ I CN V + S+I+ Y + G L +A LF+ + +D
Sbjct: 291 LLGCSELSALQLGRQIHQIVSKSTLCNDVTALTSLISMYCKCGELGDAWKLFEVMKKKDV 350
Query: 267 ISWTSMIDGYLSVGQVSNAYYLFHNMPDR----DAVAWTAMI-----SGLVQNELFVEAT 317
++W +MI GY G A LF M D D + + A++ +GLV +
Sbjct: 351 VAWNAMISGYAQHGNADKALCLFREMIDNKIRPDWITFVAVLLACNHAGLVN----IGMA 406
Query: 318 YLFMEMRAHGVPPLNATFSV---LFGAAG 343
Y +R + V P ++ L G AG
Sbjct: 407 YFESMVRDYKVEPQPDHYTCMVDLLGRAG 435
>sp|Q9SHZ8|PP168_ARATH Pentatricopeptide repeat-containing protein At2g22070
OS=Arabidopsis thaliana GN=PCMP-H41 PE=3 SV=1
Length = 786
Score = 338 bits (867), Expect = 7e-92, Method: Compositional matrix adjust.
Identities = 209/624 (33%), Positives = 336/624 (53%), Gaps = 45/624 (7%)
Query: 21 YSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMI 80
YSK G+ A+ LF MP R S+N +LS + + G + F+++P+R+ VSWT MI
Sbjct: 59 YSKTGYALHARKLFDEMPLRTAFSWNTVLSAYSKRGDMDSTCEFFDQLPQRDSVSWTTMI 118
Query: 81 CGLADAGRVCEARKLFEEMPER-------------------------------------- 102
G + G+ +A ++ +M +
Sbjct: 119 VGYKNIGQYHKAIRVMGDMVKEGIEPTQFTLTNVLASVAATRCMETGKKVHSFIVKLGLR 178
Query: 103 -NVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEM 161
NV NS++ + G+ A+ VF+ M ++++ SWNAMIA +++ M A+ FE+M
Sbjct: 179 GNVSVSNSLLNMYAKCGDPMMAKFVFDRMVVRDISSWNAMIALHMQVGQMDLAMAQFEQM 238
Query: 162 EERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNG-FHKESLLLF 220
ER++VTW SMISG+ + G +F +M R +++S + + E L +
Sbjct: 239 AERDIVTWNSMISGFNQRGYDLRALDIFSKMLRDSLLSPDRFTLASVLSACANLEKLCIG 298
Query: 221 IEMKG-ICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRD-EIS-WTSMIDGYL 277
++ I G + + N++I+ Y R G +E A+ L + +D +I +T+++DGY+
Sbjct: 299 KQIHSHIVTTGFDISGIVLNALISMYSRCGGVETARRLIEQRGTKDLKIEGFTALLDGYI 358
Query: 278 SVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSV 337
+G ++ A +F ++ DRD VAWTAMI G Q+ + EA LF M G P + T +
Sbjct: 359 KLGDMNQAKNIFVSLKDRDVVAWTAMIVGYEQHGSYGEAINLFRSMVGGGQRPNSYTLAA 418
Query: 338 LFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNM-VSR 396
+ A + A++ G+QIH +K+ + + N LI+MYAK G I +A F + R
Sbjct: 419 MLSVASSLASLSHGKQIHGSAVKSGEIYSVSVSNALITMYAKAGNITSASRAFDLIRCER 478
Query: 397 DLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELF 456
D VSW SM++ + HG A E L++FE+ML G P+ +T++G+ SAC+HAGLV++G + F
Sbjct: 479 DTVSWTSMIIALAQHGHAEEALELFETMLMEGLRPDHITYVGVFSACTHAGLVNQGRQYF 538
Query: 457 NAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEG 516
+ M DV KI P HY M++L GRAG ++EA+EF+ ++P EPD WG+LL AC
Sbjct: 539 DMMKDVDKIIPTLSHYACMVDLFGRAGLLQEAQEFIEKMPIEPDVVTWGSLLSACR-VHK 597
Query: 517 NAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWL 576
N ++ + AA+RLL L+P N+ A+ L N+Y+A G+ E K+R M V+K G SW+
Sbjct: 598 NIDLGKVAAERLLLLEPENSGAYSALANLYSACGKWEEAAKIRKSMKDGRVKKEQGFSWI 657
Query: 577 MRNGGIQMFLSGDKIPAQVAEILL 600
+ +F D + EI +
Sbjct: 658 EVKHKVHVFGVEDGTHPEKNEIYM 681
Score = 132 bits (332), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 106/410 (25%), Positives = 198/410 (48%), Gaps = 25/410 (6%)
Query: 16 SSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVS 75
S + Y+K G AK +F M R++ S+NAM++ +Q G++ A FE+M ER++V+
Sbjct: 186 SLLNMYAKCGDPMMAKFVFDRMVVRDISSWNAMIALHMQVGQMDLAMAQFEQMAERDIVT 245
Query: 76 WTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRN----------GELNEARK 125
W +MI G G A +F +M +++S + + + + G+ +
Sbjct: 246 WNSMISGFNQRGYDLRALDIFSKMLRDSLLSPDRFTLASVLSACANLEKLCIGKQIHSHI 305
Query: 126 VFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEE--MEERNVVTWTSMISGYCRAGEVE 183
V I ++ NA+I+ Y C + A L E+ ++ + +T+++ GY + G++
Sbjct: 306 VTTGFDISGIV-LNALISMYSRCGGVETARRLIEQRGTKDLKIEGFTALLDGYIKLGDMN 364
Query: 184 EGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMIN 243
+ +F + ++VV+WTAMI G+ +G + E++ LF M G G N + +M++
Sbjct: 365 QAKNIFVSLKDRDVVAWTAMIVGYEQHGSYGEAINLFRSMVG---GGQRPNSYTLAAMLS 421
Query: 244 GYIRFGRLEEAQNLFDTVPVRDEISWTS----MIDGYLSVGQVSNAYYLFHNMP-DRDAV 298
L + + + EI S +I Y G +++A F + +RD V
Sbjct: 422 VASSLASLSHGKQIHGSAVKSGEIYSVSVSNALITMYAKAGNITSASRAFDLIRCERDTV 481
Query: 299 AWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVL 358
+WT+MI L Q+ EA LF M G+ P + T+ +F A ++ GRQ + +
Sbjct: 482 SWTSMIIALAQHGHAEEALELFETMLMEGLRPDHITYVGVFSACTHAGLVNQGRQ-YFDM 540
Query: 359 MKTESESDLILEN--CLISMYAKCGVIDNAYNIFSNM-VSRDLVSWNSMV 405
MK + L + C++ ++ + G++ A M + D+V+W S++
Sbjct: 541 MKDVDKIIPTLSHYACMVDLFGRAGLLQEAQEFIEKMPIEPDVVTWGSLL 590
Score = 123 bits (308), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 77/289 (26%), Positives = 131/289 (45%), Gaps = 47/289 (16%)
Query: 239 NSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAV 298
N+++N Y + G A+ LFD +P+R SW +++ Y G + + F +P RD+V
Sbjct: 53 NNLMNVYSKTGYALHARKLFDEMPLRTAFSWNTVLSAYSKRGDMDSTCEFFDQLPQRDSV 112
Query: 299 AWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVL 358
+WT MI G + +A + +M G+ P T + + + AT ++ G+++H +
Sbjct: 113 SWTTMIVGYKNIGQYHKAIRVMGDMVKEGIEPTQFTLTNVLASVAATRCMETGKKVHSFI 172
Query: 359 MKTESESDLILENCLISMYAKC-------------------------------GVIDNAY 387
+K ++ + N L++MYAKC G +D A
Sbjct: 173 VKLGLRGNVSVSNSLLNMYAKCGDPMMAKFVFDRMVVRDISSWNAMIALHMQVGQMDLAM 232
Query: 388 NIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESML-ESGTHPNSVTFLGILSACS-- 444
F M RD+V+WNSM+ GF+ G L +F ML +S P+ T +LSAC+
Sbjct: 233 AQFEQMAERDIVTWNSMISGFNQRGYDLRALDIFSKMLRDSLLSPDRFTLASVLSACANL 292
Query: 445 ---------HAGLVSRGWEL----FNAMFDVYKIQPGPEHYVSMINLLG 480
H+ +V+ G+++ NA+ +Y G E +I G
Sbjct: 293 EKLCIGKQIHSHIVTTGFDISGIVLNALISMYSRCGGVETARRLIEQRG 341
Score = 68.2 bits (165), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 58/255 (22%), Positives = 113/255 (44%), Gaps = 51/255 (20%)
Query: 3 ERNHPKSLVVH-LTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEA 61
E+ K L + T+ + Y K G +++AK +F + R+VV++ AM+ G+ Q+G EA
Sbjct: 338 EQRGTKDLKIEGFTALLDGYIKLGDMNQAKNIFVSLKDRDVVAWTAMIVGYEQHGSYGEA 397
Query: 62 RRLFEEM------PER---------------------------------NVVSWTAMICG 82
LF M P +V A+I
Sbjct: 398 INLFRSMVGGGQRPNSYTLAAMLSVASSLASLSHGKQIHGSAVKSGEIYSVSVSNALITM 457
Query: 83 LADAGRVCEARKLFEEMP-ERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNV----IS 137
A AG + A + F+ + ER+ VSW SM++ L ++G EA ++F +M ++ + I+
Sbjct: 458 YAKAGNITSASRAFDLIRCERDTVSWTSMIIALAQHGHAEEALELFETMLMEGLRPDHIT 517
Query: 138 WNAMIAGYVECCMMGEAIVLFEEMEERNVVT-----WTSMISGYCRAGEVEEGYCLFRRM 192
+ + + ++ + F+ M++ + + + M+ + RAG ++E +M
Sbjct: 518 YVGVFSACTHAGLVNQGRQYFDMMKDVDKIIPTLSHYACMVDLFGRAGLLQEAQEFIEKM 577
Query: 193 P-RKNVVSWTAMIGG 206
P +VV+W +++
Sbjct: 578 PIEPDVVTWGSLLSA 592
Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/185 (21%), Positives = 83/185 (44%), Gaps = 15/185 (8%)
Query: 354 IHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGL 413
+HC ++K+ + L N L+++Y+K G +A +F M R SWN+++ +S G
Sbjct: 36 VHCRVIKSGLMFSVYLMNNLMNVYSKTGYALHARKLFDEMPLRTAFSWNTVLSAYSKRGD 95
Query: 414 ANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYV 473
+ T + F+ + + +SV++ ++ + G + M D+ K P +
Sbjct: 96 MDSTCEFFDQLPQR----DSVSWTTMIVGYKNIGQYHKA---IRVMGDMVKEGIEPTQF- 147
Query: 474 SMINLLGRAGKI------KEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKR 527
++ N+L K+ F+++L + + +LL C G+ +A+ R
Sbjct: 148 TLTNVLASVAATRCMETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKC-GDPMMAKFVFDR 206
Query: 528 LLELD 532
++ D
Sbjct: 207 MVVRD 211
>sp|Q9FHF9|PP419_ARATH Pentatricopeptide repeat-containing protein At5g46460,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H49 PE=2
SV=1
Length = 697
Score = 337 bits (865), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 187/557 (33%), Positives = 303/557 (54%), Gaps = 27/557 (4%)
Query: 48 MLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSW 107
++ L + R+ EAR +F ++P +V +T MI G + R+ +A LF+EMP R+VVSW
Sbjct: 41 LICNHLLSRRIDEAREVFNQVPSPHVSLYTKMITGYTRSNRLVDALNLFDEMPVRDVVSW 100
Query: 108 NSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVV 167
NSM+ G + G++N A K+F+ MP ++V+SW AM+ G + +A LF +M ++
Sbjct: 101 NSMISGCVECGDMNTAVKLFDEMPERSVVSWTAMVNGCFRSGKVDQAERLFYQMPVKDTA 160
Query: 168 TWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGIC 227
W SM+ GY + G+V++ LF++MP KNV+SWT MI G N E+L LF M C
Sbjct: 161 AWNSMVHGYLQFGKVDDALKLFKQMPGKNVISWTTMICGLDQNERSGEALDLFKNMLRCC 220
Query: 228 DNGNN----CNVQSCNS--------MINGY-IRFGRLEEAQNLFDTVPVRDEISWTSMID 274
+ C + +C + ++G I+ G L E E S+I
Sbjct: 221 IKSTSRPFTCVITACANAPAFHMGIQVHGLIIKLGFLYE------------EYVSASLIT 268
Query: 275 GYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNAT 334
Y + ++ ++ +F WTA++SG N+ +A +F M + + P +T
Sbjct: 269 FYANCKRIGDSRKVFDEKVHEQVAVWTALLSGYSLNKKHEDALSIFSGMLRNSILPNQST 328
Query: 335 FSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMV 394
F+ + A +D G+++H V +K E+D + N L+ MY+ G +++A ++F +
Sbjct: 329 FASGLNSCSALGTLDWGKEMHGVAVKLGLETDAFVGNSLVVMYSDSGNVNDAVSVFIKIF 388
Query: 395 SRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWE 454
+ +VSWNS+++G + HG +F M+ P+ +TF G+LSACSH G + +G +
Sbjct: 389 KKSIVSWNSIIVGCAQHGRGKWAFVIFGQMIRLNKEPDEITFTGLLSACSHCGFLEKGRK 448
Query: 455 LFNAMFD-VYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGF 513
LF M + I +HY M+++LGR GK+KEAEE + R+ +P+ +W ALL AC
Sbjct: 449 LFYYMSSGINHIDRKIQHYTCMVDILGRCGKLKEAEELIERMVVKPNEMVWLALLSACRM 508
Query: 514 CEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGC 573
+ + E AA + LD ++ A+V+L NIYA++GR KLR+ M G+ K PG
Sbjct: 509 -HSDVDRGEKAAAAIFNLDSKSSAAYVLLSNIYASAGRWSNVSKLRVKMKKNGIMKKPGS 567
Query: 574 SWLMRNGGIQMFLSGDK 590
SW++ G F SGD+
Sbjct: 568 SWVVIRGKKHEFFSGDQ 584
Score = 177 bits (450), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 138/524 (26%), Positives = 236/524 (45%), Gaps = 86/524 (16%)
Query: 7 PKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFE 66
P V T IT Y++ + +A LF MP R+VVS+N+M+SG ++ G ++ A +LF+
Sbjct: 62 PSPHVSLYTKMITGYTRSNRLVDALNLFDEMPVRDVVSWNSMISGCVECGDMNTAVKLFD 121
Query: 67 EMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKV 126
EMPER+VVSWTAM+ G +G+V +A +LF +MP ++ +WNSMV G ++ G++++A K+
Sbjct: 122 EMPERSVVSWTAMVNGCFRSGKVDQAERLFYQMPVKDTAAWNSMVHGYLQFGKVDDALKL 181
Query: 127 FNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWT---------------- 170
F MP KNVISW MI G + GEA+ LF+ M + + +
Sbjct: 182 FKQMPGKNVISWTTMICGLDQNERSGEALDLFKNMLRCCIKSTSRPFTCVITACANAPAF 241
Query: 171 -----------------------SMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGF 207
S+I+ Y + + +F + V WTA++ G+
Sbjct: 242 HMGIQVHGLIIKLGFLYEEYVSASLITFYANCKRIGDSRKVFDEKVHEQVAVWTALLSGY 301
Query: 208 AWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVR--- 264
+ N H+++L +F G+ N N + S +N G L+ + + V V+
Sbjct: 302 SLNKKHEDALSIF---SGMLRNSILPNQSTFASGLNSCSALGTLDWGKEM-HGVAVKLGL 357
Query: 265 --DEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFME 322
D S++ Y G V++A +F + + V+W ++I G Q+ A +F +
Sbjct: 358 ETDAFVGNSLVVMYSDSGNVNDAVSVFIKIFKKSIVSWNSIIVGCAQHGRGKWAFVIFGQ 417
Query: 323 MRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILEN--CLISMYAKC 380
M P TF+ L A ++ GR++ + + D +++ C++ + +C
Sbjct: 418 MIRLNKEPDEITFTGLLSACSHCGFLEKGRKLFYYMSSGINHIDRKIQHYTCMVDILGRC 477
Query: 381 GVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGIL 440
G + A + MV + PN + +L +L
Sbjct: 478 GKLKEAEELIERMVVK----------------------------------PNEMVWLALL 503
Query: 441 SACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGK 484
SAC V RG + A+F++ YV + N+ AG+
Sbjct: 504 SACRMHSDVDRGEKAAAAIFNLDSKSSAA--YVLLSNIYASAGR 545
Score = 95.5 bits (236), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 74/280 (26%), Positives = 125/280 (44%), Gaps = 19/280 (6%)
Query: 231 NNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFH 290
N V CN +++ R++EA+ +F+ VP +T MI GY ++ +A LF
Sbjct: 36 QNREVLICNHLLSR-----RIDEAREVFNQVPSPHVSLYTKMITGYTRSNRLVDALNLFD 90
Query: 291 NMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDL 350
MP RD V+W +MISG V+ A LF EM V A + F + +D
Sbjct: 91 EMPVRDVVSWNSMISGCVECGDMNTAVKLFDEMPERSVVSWTAMVNGCF----RSGKVDQ 146
Query: 351 GRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSH 410
+ L D N ++ Y + G +D+A +F M ++++SW +M+ G
Sbjct: 147 AER----LFYQMPVKDTAAWNSMVHGYLQFGKVDDALKLFKQMPGKNVISWTTMICGLDQ 202
Query: 411 HGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPE 470
+ + E L +F++ML S F +++AC++A G ++ + K+ E
Sbjct: 203 NERSGEALDLFKNMLRCCIKSTSRPFTCVITACANAPAFHMGIQVHGL---IIKLGFLYE 259
Query: 471 HYV--SMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALL 508
YV S+I +I ++ + V +W ALL
Sbjct: 260 EYVSASLITFYANCKRIGDSRK-VFDEKVHEQVAVWTALL 298
>sp|O49287|PP127_ARATH Putative pentatricopeptide repeat-containing protein At1g77010,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E5 PE=3
SV=1
Length = 695
Score = 317 bits (812), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 189/634 (29%), Positives = 314/634 (49%), Gaps = 68/634 (10%)
Query: 9 SLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEM 68
S+V+ + YS+ G + A+ LF MP RN S+N M+ G++ +G + R F+ M
Sbjct: 60 SIVIVANHLLQMYSRSGKMGIARNLFDEMPDRNYFSWNTMIEGYMNSGEKGTSLRFFDMM 119
Query: 69 PERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVF- 127
PER+ SW ++ G A AG + AR+LF MPE++VV+ NS++ G I NG EA ++F
Sbjct: 120 PERDGYSWNVVVSGFAKAGELSVARRLFNAMPEKDVVTLNSLLHGYILNGYAEEALRLFK 179
Query: 128 ------NSMPIKNVISWNA---------------MIAG--------------YVECCMMG 152
+++ + V+ A +I G Y +C +
Sbjct: 180 ELNFSADAITLTTVLKACAELEALKCGKQIHAQILIGGVECDSKMNSSLVNVYAKCGDLR 239
Query: 153 EAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGF 212
A + E++ E + + +++ISGY G V E LF R + V+ W +MI G+ N
Sbjct: 240 MASYMLEQIREPDDHSLSALISGYANCGRVNESRGLFDRKSNRCVILWNSMISGYIANNM 299
Query: 213 HKESLLLFIEMK--------------------GICDNGNNCNVQSC-----------NSM 241
E+L+LF EM+ G + G + +C +++
Sbjct: 300 KMEALVLFNEMRNETREDSRTLAAVINACIGLGFLETGKQMHCHACKFGLIDDIVVASTL 359
Query: 242 INGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWT 301
++ Y + G EA LF V D I SMI Y S G++ +A +F + ++ ++W
Sbjct: 360 LDMYSKCGSPMEACKLFSEVESYDTILLNSMIKVYFSCGRIDDAKRVFERIENKSLISWN 419
Query: 302 AMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKT 361
+M +G QN VE F +M +P + S + A + ++++LG Q+
Sbjct: 420 SMTNGFSQNGCTVETLEYFHQMHKLDLPTDEVSLSSVISACASISSLELGEQVFARATIV 479
Query: 362 ESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVF 421
+SD ++ + LI +Y KCG +++ +F MV D V WNSM+ G++ +G E + +F
Sbjct: 480 GLDSDQVVSSSLIDLYCKCGFVEHGRRVFDTMVKSDEVPWNSMISGYATNGQGFEAIDLF 539
Query: 422 ESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGR 481
+ M +G P +TF+ +L+AC++ GLV G +LF +M + P EH+ M++LL R
Sbjct: 540 KKMSVAGIRPTQITFMVVLTACNYCGLVEEGRKLFESMKVDHGFVPDKEHFSCMVDLLAR 599
Query: 482 AGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVV 541
AG ++EA V +PF+ D +W ++L C G + + AA++++EL+P N+ A+V
Sbjct: 600 AGYVEEAINLVEEMPFDVDGSMWSSILRGC-VANGYKAMGKKAAEKIIELEPENSVAYVQ 658
Query: 542 LCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSW 575
L I+A SG +R M V K PG SW
Sbjct: 659 LSAIFATSGDWESSALVRKLMRENNVTKNPGSSW 692
Score = 137 bits (346), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 132/530 (24%), Positives = 220/530 (41%), Gaps = 92/530 (17%)
Query: 7 PKSLVVHLTSSITKYSKRGFIDEAKALF-QLMPQRNVVSYNAMLSG-------------- 51
P+ VV L S + Y G+ +EA LF +L + ++ +L
Sbjct: 151 PEKDVVTLNSLLHGYILNGYAEEALRLFKELNFSADAITLTTVLKACAELEALKCGKQIH 210
Query: 52 ---------------------FLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVC 90
+ + G L A + E++ E + S +A+I G A+ GRV
Sbjct: 211 AQILIGGVECDSKMNSSLVNVYAKCGDLRMASYMLEQIREPDDHSLSALISGYANCGRVN 270
Query: 91 EARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMP------------------- 131
E+R LF+ R V+ WNSM+ G I N EA +FN M
Sbjct: 271 ESRGLFDRKSNRCVILWNSMISGYIANNMKMEALVLFNEMRNETREDSRTLAAVINACIG 330
Query: 132 -------------------IKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSM 172
I +++ + ++ Y +C EA LF E+E + + SM
Sbjct: 331 LGFLETGKQMHCHACKFGLIDDIVVASTLLDMYSKCGSPMEACKLFSEVESYDTILLNSM 390
Query: 173 ISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNN 232
I Y G +++ +F R+ K+++SW +M GF+ NG E+L F +M +
Sbjct: 391 IKVYFSCGRIDDAKRVFERIENKSLISWNSMTNGFSQNGCTVETLEYFHQMHKL---DLP 447
Query: 233 CNVQSCNSMINGYIRFGRLEEAQNLFDTVPV----RDEISWTSMIDGYLSVGQVSNAYYL 288
+ S +S+I+ LE + +F + D++ +S+ID Y G V + +
Sbjct: 448 TDEVSLSSVISACASISSLELGEQVFARATIVGLDSDQVVSSSLIDLYCKCGFVEHGRRV 507
Query: 289 FHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANI 348
F M D V W +MISG N EA LF +M G+ P TF V+ A +
Sbjct: 508 FDTMVKSDEVPWNSMISGYATNGQGFEAIDLFKKMSVAGIRPTQITFMVVLTACNYCGLV 567
Query: 349 DLGRQIHCVLMKTESE--SDLILENCLISMYAKCGVIDNAYNIFSNM-VSRDLVSWNSMV 405
+ GR++ MK + D +C++ + A+ G ++ A N+ M D W+S++
Sbjct: 568 EEGRKLF-ESMKVDHGFVPDKEHFSCMVDLLARAGYVEEAINLVEEMPFDVDGSMWSSIL 626
Query: 406 MGFSHHGLANETLKVFESMLESGTHP-NSVTFLGILSACSHAGLVSRGWE 454
G +G K E ++E P NSV ++ + + + +G WE
Sbjct: 627 RGCVANGYKAMGKKAAEKIIE--LEPENSVAYVQLSAIFATSG----DWE 670
Score = 63.5 bits (153), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 59/206 (28%), Positives = 93/206 (45%), Gaps = 18/206 (8%)
Query: 350 LGRQIHCVLMKTESESDL-ILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGF 408
L RQ + +L+K S + I+ N L+ MY++ G + A N+F M R+ SWN+M+ G+
Sbjct: 44 LWRQTNGLLLKKGFLSSIVIVANHLLQMYSRSGKMGIARNLFDEMPDRNYFSWNTMIEGY 103
Query: 409 SHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPG 468
+ G +L+ F+ M E + +V ++S + AG +S LFNAM
Sbjct: 104 MNSGEKGTSLRFFDMMPERDGYSWNV----VVSGFAKAGELSVARRLFNAM--------- 150
Query: 469 PEHYVSMINLLGRA----GKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHA 524
PE V +N L G +EA L F D +L AC E +
Sbjct: 151 PEKDVVTLNSLLHGYILNGYAEEALRLFKELNFSADAITLTTVLKACAELEALKCGKQIH 210
Query: 525 AKRLLELDPLNAPAHVVLCNIYAASG 550
A+ L+ ++ + L N+YA G
Sbjct: 211 AQILIGGVECDSKMNSSLVNVYAKCG 236
>sp|Q9FRI5|PPR57_ARATH Pentatricopeptide repeat-containing protein At1g25360
OS=Arabidopsis thaliana GN=PCMP-H74 PE=2 SV=1
Length = 790
Score = 316 bits (810), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 191/623 (30%), Positives = 320/623 (51%), Gaps = 48/623 (7%)
Query: 14 LTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMP--ER 71
L I Y K ++ A+ LF + + + ++ M+SG+ +G ++ AR +FE+ P R
Sbjct: 52 LNRLIDVYCKSSELNYARQLFDEISEPDKIARTTMVSGYCASGDITLARGVFEKAPVCMR 111
Query: 72 NVVSWTAMICGLADAGRVCEARKLFEEMPERNV----VSWNSMVVGLIRNGELNEARKVF 127
+ V + AMI G + A LF +M ++ S++ GL + + F
Sbjct: 112 DTVMYNAMITGFSHNNDGYSAINLFCKMKHEGFKPDNFTFASVLAGLALVADDEKQCVQF 171
Query: 128 NSMPIKNVISW-----NAMIAGYVECC----MMGEAIVLFEEMEERNVVTWTSMISGYCR 178
++ +K+ + NA+++ Y +C ++ A +F+E+ E++ +WT+M++GY +
Sbjct: 172 HAAALKSGAGYITSVSNALVSVYSKCASSPSLLHSARKVFDEILEKDERSWTTMMTGYVK 231
Query: 179 AGEVEEGYCLFRRMPRK-NVVSWTAMIGGFAWNGFHKESLLLFIEM-------------- 223
G + G L M +V++ AMI G+ GF++E+L + M
Sbjct: 232 NGYFDLGEELLEGMDDNMKLVAYNAMISGYVNRGFYQEALEMVRRMVSSGIELDEFTYPS 291
Query: 224 -------KGICDNGNNCNVQSC----------NSMINGYIRFGRLEEAQNLFDTVPVRDE 266
G+ G + NS+++ Y + G+ +EA+ +F+ +P +D
Sbjct: 292 VIRACATAGLLQLGKQVHAYVLRREDFSFHFDNSLVSLYYKCGKFDEARAIFEKMPAKDL 351
Query: 267 ISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAH 326
+SW +++ GY+S G + A +F M +++ ++W MISGL +N E LF M+
Sbjct: 352 VSWNALLSGYVSSGHIGEAKLIFKEMKEKNILSWMIMISGLAENGFGEEGLKLFSCMKRE 411
Query: 327 GVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNA 386
G P + FS + G+Q H L+K +S L N LI+MYAKCGV++ A
Sbjct: 412 GFEPCDYAFSGAIKSCAVLGAYCNGQQYHAQLLKIGFDSSLSAGNALITMYAKCGVVEEA 471
Query: 387 YNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHA 446
+F M D VSWN+++ HG E + V+E ML+ G P+ +T L +L+ACSHA
Sbjct: 472 RQVFRTMPCLDSVSWNALIAALGQHGHGAEAVDVYEEMLKKGIRPDRITLLTVLTACSHA 531
Query: 447 GLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGA 506
GLV +G + F++M VY+I PG +HY +I+LL R+GK +AE + LPF+P IW A
Sbjct: 532 GLVDQGRKYFDSMETVYRIPPGADHYARLIDLLCRSGKFSDAESVIESLPFKPTAEIWEA 591
Query: 507 LLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKG 566
LL C GN E+ AA +L L P + +++L N++AA+G+ E ++R M +G
Sbjct: 592 LLSGCR-VHGNMELGIIAADKLFGLIPEHDGTYMLLSNMHAATGQWEEVARVRKLMRDRG 650
Query: 567 VRKVPGCSWLMRNGGIQMFLSGD 589
V+K CSW+ + FL D
Sbjct: 651 VKKEVACSWIEMETQVHTFLVDD 673
Score = 80.5 bits (197), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 52/198 (26%), Positives = 101/198 (51%), Gaps = 12/198 (6%)
Query: 7 PKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFE 66
P +V + ++ Y G I EAK +F+ M ++N++S+ M+SG +NG E +LF
Sbjct: 347 PAKDLVSWNALLSGYVSSGHIGEAKLIFKEMKEKNILSWMIMISGLAENGFGEEGLKLFS 406
Query: 67 EMPERNV----VSWTAMICGLADAGRVCEARKLFEEMP----ERNVVSWNSMVVGLIRNG 118
M +++ I A G C ++ ++ + ++ + N+++ + G
Sbjct: 407 CMKREGFEPCDYAFSGAIKSCAVLGAYCNGQQYHAQLLKIGFDSSLSAGNALITMYAKCG 466
Query: 119 ELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNV----VTWTSMIS 174
+ EAR+VF +MP + +SWNA+IA + EA+ ++EEM ++ + +T ++++
Sbjct: 467 VVEEARQVFRTMPCLDSVSWNALIAALGQHGHGAEAVDVYEEMLKKGIRPDRITLLTVLT 526
Query: 175 GYCRAGEVEEGYCLFRRM 192
AG V++G F M
Sbjct: 527 ACSHAGLVDQGRKYFDSM 544
>sp|Q9LFI1|PP280_ARATH Pentatricopeptide repeat-containing protein At3g53360,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E86 PE=2
SV=1
Length = 768
Score = 311 bits (797), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 181/625 (28%), Positives = 325/625 (52%), Gaps = 57/625 (9%)
Query: 18 ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVV--- 74
++ Y K G + +A+ +F MP+RN+VSY ++++G+ QNG+ +EA RL+ +M + ++V
Sbjct: 109 LSMYGKCGSLRDAREVFDFMPERNLVSYTSVITGYSQNGQGAEAIRLYLKMLQEDLVPDQ 168
Query: 75 -SWTAMICGLADAGRVCEARKLFEEM----PERNVVSWNSMVVGLIRNGELNEARKVFNS 129
++ ++I A + V ++L ++ ++++ N+++ +R ++++A +VF
Sbjct: 169 FAFGSIIKACASSSDVGLGKQLHAQVIKLESSSHLIAQNALIAMYVRFNQMSDASRVFYG 228
Query: 130 MPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEE-------------------------- 163
+P+K++ISW+++IAG+ + EA+ +EM
Sbjct: 229 IPMKDLISWSSIIAGFSQLGFEFEALSHLKEMLSFGVFHPNEYIFGSSLKACSSLLRPDY 288
Query: 164 --------------RNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAW 209
N + S+ Y R G + +F ++ R + SW +I G A
Sbjct: 289 GSQIHGLCIKSELAGNAIAGCSLCDMYARCGFLNSARRVFDQIERPDTASWNVIIAGLAN 348
Query: 210 NGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVP----VRD 265
NG+ E++ +F +M+ +G + S S++ + L + + + + D
Sbjct: 349 NGYADEAVSVFSQMRS---SGFIPDAISLRSLLCAQTKPMALSQGMQIHSYIIKWGFLAD 405
Query: 266 EISWTSMIDGYLSVGQVSNAYYLFHNMPDR-DAVAWTAMISGLVQNELFVEATYLFMEMR 324
S++ Y + + LF + + D+V+W +++ +Q+E VE LF M
Sbjct: 406 LTVCNSLLTMYTFCSDLYCCFNLFEDFRNNADSVSWNTILTACLQHEQPVEMLRLFKLML 465
Query: 325 AHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVID 384
P + T L +++ LG Q+HC +KT + ++N LI MYAKCG +
Sbjct: 466 VSECEPDHITMGNLLRGCVEISSLKLGSQVHCYSLKTGLAPEQFIKNGLIDMYAKCGSLG 525
Query: 385 NAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACS 444
A IF +M +RD+VSW+++++G++ G E L +F+ M +G PN VTF+G+L+ACS
Sbjct: 526 QARRIFDSMDNRDVVSWSTLIVGYAQSGFGEEALILFKEMKSAGIEPNHVTFVGVLTACS 585
Query: 445 HAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIW 504
H GLV G +L+ M + I P EH +++LL RAG++ EAE F+ + EPD +W
Sbjct: 586 HVGLVEEGLKLYATMQTEHGISPTKEHCSCVVDLLARAGRLNEAERFIDEMKLEPDVVVW 645
Query: 505 GALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGL 564
LL AC +GN +A+ AA+ +L++DP N+ AHV+LC+++A+SG LR M
Sbjct: 646 KTLLSACK-TQGNVHLAQKAAENILKIDPFNSTAHVLLCSMHASSGNWENAALLRSSMKK 704
Query: 565 KGVRKVPGCSWLMRNGGIQMFLSGD 589
V+K+PG SW+ I +F + D
Sbjct: 705 HDVKKIPGQSWIEIEDKIHIFFAED 729
Score = 122 bits (306), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 91/362 (25%), Positives = 177/362 (48%), Gaps = 49/362 (13%)
Query: 106 SWNSMVVGLIRNGELNEARKV----FNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEM 161
++ S++ + L + RK+ NS + I N +++ Y +C + +A +F+ M
Sbjct: 69 TYISLICACSSSRSLAQGRKIHDHILNSNCKYDTILNNHILSMYGKCGSLRDAREVFDFM 128
Query: 162 EERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVV----SWTAMIGGFAWN---GFHK 214
ERN+V++TS+I+GY + G+ E L+ +M ++++V ++ ++I A + G K
Sbjct: 129 PERNLVSYTSVITGYSQNGQGAEAIRLYLKMLQEDLVPDQFAFGSIIKACASSSDVGLGK 188
Query: 215 ESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMID 274
+ I+++ ++ ++ + N++I Y+RF ++ +A +F +P++D ISW+S+I
Sbjct: 189 QLHAQVIKLE------SSSHLIAQNALIAMYVRFNQMSDASRVFYGIPMKDLISWSSIIA 242
Query: 275 GYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGV-PPLNA 333
G+ +G EA EM + GV P
Sbjct: 243 GFSQLG-------------------------------FEFEALSHLKEMLSFGVFHPNEY 271
Query: 334 TFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNM 393
F A + D G QIH + +K+E + I L MYA+CG +++A +F +
Sbjct: 272 IFGSSLKACSSLLRPDYGSQIHGLCIKSELAGNAIAGCSLCDMYARCGFLNSARRVFDQI 331
Query: 394 VSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGW 453
D SWN ++ G +++G A+E + VF M SG P++++ +L A + +S+G
Sbjct: 332 ERPDTASWNVIIAGLANNGYADEAVSVFSQMRSSGFIPDAISLRSLLCAQTKPMALSQGM 391
Query: 454 EL 455
++
Sbjct: 392 QI 393
>sp|Q9LSB8|PP235_ARATH Putative pentatricopeptide repeat-containing protein At3g15930
OS=Arabidopsis thaliana GN=PCMP-E51 PE=3 SV=2
Length = 687
Score = 304 bits (779), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 183/562 (32%), Positives = 300/562 (53%), Gaps = 25/562 (4%)
Query: 56 GRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVV----SWNSMV 111
G +S A +LF ++PE +VV W MI G + E +L+ M + V ++ ++
Sbjct: 82 GHVSYAYKLFVKIPEPDVVVWNNMIKGWSKVDCDGEGVRLYLNMLKEGVTPDSHTFPFLL 141
Query: 112 VGLIRNGELNEARKVFNSMPIK-----NVISWNAMIAGYVECCMMGEAIVLFEEMEERNV 166
GL R+G K + +K N+ NA++ Y C +M A +F+ + +V
Sbjct: 142 NGLKRDGGALACGKKLHCHVVKFGLGSNLYVQNALVKMYSLCGLMDMARGVFDRRCKEDV 201
Query: 167 VTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGI 226
+W MISGY R E EE L M R N+VS T++ + K ++ K +
Sbjct: 202 FSWNLMISGYNRMKEYEESIELLVEMER-NLVSPTSVTLLLVLSACSK------VKDKDL 254
Query: 227 C----DNGNNCNVQSC----NSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLS 278
C + + C + N+++N Y G ++ A +F ++ RD ISWTS++ GY+
Sbjct: 255 CKRVHEYVSECKTEPSLRLENALVNAYAACGEMDIAVRIFRSMKARDVISWTSIVKGYVE 314
Query: 279 VGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVL 338
G + A F MP RD ++WT MI G ++ F E+ +F EM++ G+ P T +
Sbjct: 315 RGNLKLARTYFDQMPVRDRISWTIMIDGYLRAGCFNESLEIFREMQSAGMIPDEFTMVSV 374
Query: 339 FGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDL 398
A ++++G I + K + ++D+++ N LI MY KCG + A +F +M RD
Sbjct: 375 LTACAHLGSLEIGEWIKTYIDKNKIKNDVVVGNALIDMYFKCGCSEKAQKVFHDMDQRDK 434
Query: 399 VSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNA 458
+W +MV+G +++G E +KVF M + P+ +T+LG+LSAC+H+G+V + + F
Sbjct: 435 FTWTAMVVGLANNGQGQEAIKVFFQMQDMSIQPDDITYLGVLSACNHSGMVDQARKFFAK 494
Query: 459 MFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNA 518
M ++I+P HY M+++LGRAG +KEA E + ++P P+ +WGALLGA +
Sbjct: 495 MRSDHRIEPSLVHYGCMVDMLGRAGLVKEAYEILRKMPMNPNSIVWGALLGASRL-HNDE 553
Query: 519 EIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMR 578
+AE AAK++LEL+P N + +LCNIYA R + ++R + ++K PG S +
Sbjct: 554 PMAELAAKKILELEPDNGAVYALLCNIYAGCKRWKDLREVRRKIVDVAIKKTPGFSLIEV 613
Query: 579 NGGIQMFLSGDKIPAQVAEILL 600
NG F++GDK Q EI +
Sbjct: 614 NGFAHEFVAGDKSHLQSEEIYM 635
Score = 144 bits (362), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 104/371 (28%), Positives = 172/371 (46%), Gaps = 26/371 (7%)
Query: 41 NVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMP 100
N+ NA++ + G + AR +F+ + +V SW MI G E+ +L EM
Sbjct: 169 NLYVQNALVKMYSLCGLMDMARGVFDRRCKEDVFSWNLMISGYNRMKEYEESIELLVEM- 227
Query: 101 ERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISW-------------NAMIAGYVE 147
ERN+VS S+ + L+ L+ KV + K V + NA++ Y
Sbjct: 228 ERNLVSPTSVTLLLV----LSACSKVKDKDLCKRVHEYVSECKTEPSLRLENALVNAYAA 283
Query: 148 CCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGF 207
C M A+ +F M+ R+V++WTS++ GY G ++ F +MP ++ +SWT MI G+
Sbjct: 284 CGEMDIAVRIFRSMKARDVISWTSIVKGYVERGNLKLARTYFDQMPVRDRISWTIMIDGY 343
Query: 208 AWNGFHKESLLLFIEMKG---ICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVR 264
G ESL +F EM+ I D +V + + + G + G E + D ++
Sbjct: 344 LRAGCFNESLEIFREMQSAGMIPDEFTMVSVLTACAHL-GSLEIG--EWIKTYIDKNKIK 400
Query: 265 -DEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEM 323
D + ++ID Y G A +FH+M RD WTAM+ GL N EA +F +M
Sbjct: 401 NDVVVGNALIDMYFKCGCSEKAQKVFHDMDQRDKFTWTAMVVGLANNGQGQEAIKVFFQM 460
Query: 324 RAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTES-ESDLILENCLISMYAKCGV 382
+ + P + T+ + A + +D R+ + E L+ C++ M + G+
Sbjct: 461 QDMSIQPDDITYLGVLSACNHSGMVDQARKFFAKMRSDHRIEPSLVHYGCMVDMLGRAGL 520
Query: 383 IDNAYNIFSNM 393
+ AY I M
Sbjct: 521 VKEAYEILRKM 531
Score = 107 bits (267), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 70/273 (25%), Positives = 133/273 (48%), Gaps = 17/273 (6%)
Query: 46 NAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVV 105
NA+++ + G + A R+F M R+V+SWT+++ G + G + AR F++MP R+ +
Sbjct: 275 NALVNAYAACGEMDIAVRIFRSMKARDVISWTSIVKGYVERGNLKLARTYFDQMPVRDRI 334
Query: 106 SWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCM------MGEAIVLFE 159
SW M+ G +R G NE+ ++F M +I + + C +GE I +
Sbjct: 335 SWTIMIDGYLRAGCFNESLEIFREMQSAGMIPDEFTMVSVLTACAHLGSLEIGEWIKTYI 394
Query: 160 EME--ERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESL 217
+ + +VV ++I Y + G E+ +F M +++ +WTAM+ G A NG +E++
Sbjct: 395 DKNKIKNDVVVGNALIDMYFKCGCSEKAQKVFHDMDQRDKFTWTAMVVGLANNGQGQEAI 454
Query: 218 LLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEIS-----WTSM 272
+F +M+ + ++ S N G +++A+ F + I + M
Sbjct: 455 KVFFQMQDMSIQPDDITYLGVLSACN---HSGMVDQARKFFAKMRSDHRIEPSLVHYGCM 511
Query: 273 IDGYLSVGQVSNAYYLFHNMP-DRDAVAWTAMI 304
+D G V AY + MP + +++ W A++
Sbjct: 512 VDMLGRAGLVKEAYEILRKMPMNPNSIVWGALL 544
Score = 96.3 bits (238), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 68/269 (25%), Positives = 139/269 (51%), Gaps = 15/269 (5%)
Query: 18 ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWT 77
+ Y+ G +D A +F+ M R+V+S+ +++ G+++ G L AR F++MP R+ +SWT
Sbjct: 278 VNAYAACGEMDIAVRIFRSMKARDVISWTSIVKGYVERGNLKLARTYFDQMPVRDRISWT 337
Query: 78 AMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIR------NGELNEARKVF-NSM 130
MI G AG E+ ++F EM ++ +V ++ + E+ E K + +
Sbjct: 338 IMIDGYLRAGCFNESLEIFREMQSAGMIPDEFTMVSVLTACAHLGSLEIGEWIKTYIDKN 397
Query: 131 PIKN-VISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLF 189
IKN V+ NA+I Y +C +A +F +M++R+ TWT+M+ G G+ +E +F
Sbjct: 398 KIKNDVVVGNALIDMYFKCGCSEKAQKVFHDMDQRDKFTWTAMVVGLANNGQGQEAIKVF 457
Query: 190 RRMPRKNV----VSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGY 245
+M ++ +++ ++ +G ++ F +M+ D+ ++ M++
Sbjct: 458 FQMQDMSIQPDDITYLGVLSACNHSGMVDQARKFFAKMRS--DHRIEPSLVHYGCMVDML 515
Query: 246 IRFGRLEEAQNLFDTVPVR-DEISWTSMI 273
R G ++EA + +P+ + I W +++
Sbjct: 516 GRAGLVKEAYEILRKMPMNPNSIVWGALL 544
Score = 86.7 bits (213), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 66/245 (26%), Positives = 109/245 (44%), Gaps = 49/245 (20%)
Query: 11 VVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMP- 69
V+ TS + Y +RG + A+ F MP R+ +S+ M+ G+L+ G +E+ +F EM
Sbjct: 302 VISWTSIVKGYVERGNLKLARTYFDQMPVRDRISWTIMIDGYLRAGCFNESLEIFREMQS 361
Query: 70 --------------------------------------ERNVVSWTAMICGLADAGRVCE 91
+ +VV A+I G +
Sbjct: 362 AGMIPDEFTMVSVLTACAHLGSLEIGEWIKTYIDKNKIKNDVVVGNALIDMYFKCGCSEK 421
Query: 92 ARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECC-- 149
A+K+F +M +R+ +W +MVVGL NG+ EA KVF M ++ + G + C
Sbjct: 422 AQKVFHDMDQRDKFTWTAMVVGLANNGQGQEAIKVFFQMQDMSIQPDDITYLGVLSACNH 481
Query: 150 --MMGEAIVLFEEME-----ERNVVTWTSMISGYCRAGEVEEGYCLFRRMP-RKNVVSWT 201
M+ +A F +M E ++V + M+ RAG V+E Y + R+MP N + W
Sbjct: 482 SGMVDQARKFFAKMRSDHRIEPSLVHYGCMVDMLGRAGLVKEAYEILRKMPMNPNSIVWG 541
Query: 202 AMIGG 206
A++G
Sbjct: 542 ALLGA 546
Score = 63.5 bits (153), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 80/152 (52%), Gaps = 10/152 (6%)
Query: 3 ERNHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEAR 62
++N K+ VV + I Y K G ++A+ +F M QR+ ++ AM+ G NG+ EA
Sbjct: 395 DKNKIKNDVVVGNALIDMYFKCGCSEKAQKVFHDMDQRDKFTWTAMVVGLANNGQGQEAI 454
Query: 63 RLFEEMPERNV----VSWTAMICGLADAGRVCEARKLFEEMP-----ERNVVSWNSMVVG 113
++F +M + ++ +++ ++ +G V +ARK F +M E ++V + MV
Sbjct: 455 KVFFQMQDMSIQPDDITYLGVLSACNHSGMVDQARKFFAKMRSDHRIEPSLVHYGCMVDM 514
Query: 114 LIRNGELNEARKVFNSMPIK-NVISWNAMIAG 144
L R G + EA ++ MP+ N I W A++
Sbjct: 515 LGRAGLVKEAYEILRKMPMNPNSIVWGALLGA 546
>sp|Q9SVP7|PP307_ARATH Pentatricopeptide repeat-containing protein At4g13650
OS=Arabidopsis thaliana GN=PCMP-H42 PE=2 SV=2
Length = 1064
Score = 304 bits (778), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 191/624 (30%), Positives = 300/624 (48%), Gaps = 55/624 (8%)
Query: 18 ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEM------PER 71
++ Y G + A+ +F M QR+ V+YN +++G Q G +A LF+ M P+
Sbjct: 330 VSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMHLDGLEPDS 389
Query: 72 NVVSWTAMIC-------------------GLADAGRV----------C----EARKLFEE 98
N ++ + C G A ++ C A F E
Sbjct: 390 NTLASLVVACSADGTLFRGQQLHAYTTKLGFASNNKIEGALLNLYAKCADIETALDYFLE 449
Query: 99 MPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLF 158
NVV WN M+V +L + ++F M I+ ++ ++ C+ + L
Sbjct: 450 TEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELG 509
Query: 159 EEMEER--------NVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWN 210
E++ + N + +I Y + G+++ + + R K+VVSWT MI G+
Sbjct: 510 EQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQY 569
Query: 211 GFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVR----DE 266
F ++L F +M D G + + ++ L+E Q + V D
Sbjct: 570 NFDDKALTTFRQM---LDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDL 626
Query: 267 ISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAH 326
+++ Y G++ +Y F D +AW A++SG Q+ EA +F+ M
Sbjct: 627 PFQNALVTLYSRCGKIEESYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFVRMNRE 686
Query: 327 GVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNA 386
G+ N TF AA TAN+ G+Q+H V+ KT +S+ + N LISMYAKCG I +A
Sbjct: 687 GIDNNNFTFGSAVKAASETANMKQGKQVHAVITKTGYDSETEVCNALISMYAKCGSISDA 746
Query: 387 YNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHA 446
F + +++ VSWN+++ +S HG +E L F+ M+ S PN VT +G+LSACSH
Sbjct: 747 EKQFLEVSTKNEVSWNAIINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSACSHI 806
Query: 447 GLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGA 506
GLV +G F +M Y + P PEHYV ++++L RAG + A+EF+ +P +PD +W
Sbjct: 807 GLVDKGIAYFESMNSEYGLSPKPEHYVCVVDMLTRAGLLSRAKEFIQEMPIKPDALVWRT 866
Query: 507 LLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKG 566
LL AC N EI E AA LLEL+P ++ +V+L N+YA S + R M KG
Sbjct: 867 LLSAC-VVHKNMEIGEFAAHHLLELEPEDSATYVLLSNLYAVSKKWDARDLTRQKMKEKG 925
Query: 567 VRKVPGCSWLMRNGGIQMFLSGDK 590
V+K PG SW+ I F GD+
Sbjct: 926 VKKEPGQSWIEVKNSIHSFYVGDQ 949
Score = 147 bits (370), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 123/469 (26%), Positives = 211/469 (44%), Gaps = 28/469 (5%)
Query: 48 MLSGFLQ-NGRLSEARRLFEEMPERNVVSWTAMICGLAD----AGRVCEARKLFEEMPER 102
+L G L+ NG L E R+L ++ + + S + L D G + A K+F+EMPER
Sbjct: 90 LLEGCLKTNGSLDEGRKLHSQILKLGLDSNGCLSEKLFDFYLFKGDLYGAFKVFDEMPER 149
Query: 103 NVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMG---------- 152
+ +WN M+ L + E +F M +NV +G +E C G
Sbjct: 150 TIFTWNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEACRGGSVAFDVVEQI 209
Query: 153 EAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGF 212
A +L++ + + VV +I Y R G V+ +F + K+ SW AMI G + N
Sbjct: 210 HARILYQGLRDSTVVC-NPLIDLYSRNGFVDLARRVFDGLRLKDHSSWVAMISGLSKNEC 268
Query: 213 HKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVP----VRDEIS 268
E++ LF +M + G + +S+++ + LE + L V D
Sbjct: 269 EAEAIRLFCDMYVL---GIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYV 325
Query: 269 WTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGV 328
+++ Y +G + +A ++F NM RDAV + +I+GL Q +A LF M G+
Sbjct: 326 CNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMHLDGL 385
Query: 329 PPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYN 388
P + T + L A A + G+Q+H K S+ +E L+++YAKC I+ A +
Sbjct: 386 EPDSNTLASLVVACSADGTLFRGQQLHAYTTKLGFASNNKIEGALLNLYAKCADIETALD 445
Query: 389 IFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGL 448
F ++V WN M++ + + ++F M PN T+ IL C G
Sbjct: 446 YFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGD 505
Query: 449 VSRGWELFNAMFDVYKIQPGPEHYVS--MINLLGRAGKIKEAEEFVLRL 495
+ G ++ + + K YV +I++ + GK+ A + ++R
Sbjct: 506 LELGEQIHS---QIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRF 551
Score = 136 bits (343), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 112/423 (26%), Positives = 191/423 (45%), Gaps = 42/423 (9%)
Query: 100 PERNVVSWNSMVVGLIR-NGELNEARKVFNSMPIKNVISWNAMIAG-----YVECCMMGE 153
P + W ++ G ++ NG L+E RK+ +S +K + N ++ Y+ +
Sbjct: 82 PNHQTLKW--LLEGCLKTNGSLDEGRKL-HSQILKLGLDSNGCLSEKLFDFYLFKGDLYG 138
Query: 154 AIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFH 213
A +F+EM ER + TW MI + E + LF RM +NV G
Sbjct: 139 AFKVFDEMPERTIFTWNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGV------ 192
Query: 214 KESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDE-ISWTSM 272
+++C G + F +E+ +RD + +
Sbjct: 193 ---------------------LEACRG---GSVAFDVVEQIHARILYQGLRDSTVVCNPL 228
Query: 273 IDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLN 332
ID Y G V A +F + +D +W AMISGL +NE EA LF +M G+ P
Sbjct: 229 IDLYSRNGFVDLARRVFDGLRLKDHSSWVAMISGLSKNECEAEAIRLFCDMYVLGIMPTP 288
Query: 333 ATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSN 392
FS + A ++++G Q+H +++K SD + N L+S+Y G + +A +IFSN
Sbjct: 289 YAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGNLISAEHIFSN 348
Query: 393 MVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRG 452
M RD V++N+++ G S G + +++F+ M G P+S T ++ ACS G + RG
Sbjct: 349 MSQRDAVTYNTLINGLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSADGTLFRG 408
Query: 453 WELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACG 512
+L +A + +++NL + I+ A ++ L E + +W +L A G
Sbjct: 409 QQL-HAYTTKLGFASNNKIEGALLNLYAKCADIETALDYFLETEVE-NVVLWNVMLVAYG 466
Query: 513 FCE 515
+
Sbjct: 467 LLD 469
Score = 130 bits (328), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 120/511 (23%), Positives = 221/511 (43%), Gaps = 64/511 (12%)
Query: 30 AKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRV 89
A+ L+Q + VV N ++ + +NG + ARR+F+ + ++ SW AMI GL+
Sbjct: 211 ARILYQGLRDSTVVC-NPLIDLYSRNGFVDLARRVFDGLRLKDHSSWVAMISGLSKNECE 269
Query: 90 CEARKLFEEMPERNVVSWN---SMVVGLIRNGELNEARKVFNSMPIK-----NVISWNAM 141
EA +LF +M ++ S V+ + E E + + + +K + NA+
Sbjct: 270 AEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNAL 329
Query: 142 IAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRM------PRK 195
++ Y + A +F M +R+ VT+ ++I+G + G E+ LF+RM P
Sbjct: 330 VSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMHLDGLEPDS 389
Query: 196 NVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQ 255
N ++ + F + L + G N + +++N Y + +E A
Sbjct: 390 NTLASLVVACSADGTLFRGQQLHAYTTKLGFASNN-----KIEGALLNLYAKCADIETAL 444
Query: 256 NLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVE 315
+ F V + + W M+ Y + + N++ +F
Sbjct: 445 DYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFR------------------------- 479
Query: 316 ATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLIS 375
+M+ + P T+ + +++LG QIH ++KT + + + + LI
Sbjct: 480 ------QMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCSVLID 533
Query: 376 MYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVT 435
MYAK G +D A++I +D+VSW +M+ G++ + ++ L F ML+ G + V
Sbjct: 534 MYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVG 593
Query: 436 FLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRL 495
+SAC+ + G ++ +A V +++ L R GKI+E+ L
Sbjct: 594 LTNAVSACAGLQALKEGQQI-HAQACVSGFSSDLPFQNALVTLYSRCGKIEES-----YL 647
Query: 496 PFEP----DHRIWGALLGACGFCE-GNAEIA 521
FE D+ W AL+ GF + GN E A
Sbjct: 648 AFEQTEAGDNIAWNALVS--GFQQSGNNEEA 676
Score = 103 bits (256), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 82/307 (26%), Positives = 129/307 (42%), Gaps = 10/307 (3%)
Query: 272 MIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPL 331
+ D YL G + A+ +F MP+R W MI L L E LF+ M + V P
Sbjct: 126 LFDFYLFKGDLYGAFKVFDEMPERTIFTWNKMIKELASRNLIGEVFGLFVRMVSENVTPN 185
Query: 332 NATFS-VLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIF 390
TFS VL G + D+ QIH ++ ++ N LI +Y++ G +D A +F
Sbjct: 186 EGTFSGVLEACRGGSVAFDVVEQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVF 245
Query: 391 SNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVS 450
+ +D SW +M+ G S + E +++F M G P F +LSAC +
Sbjct: 246 DGLRLKDHSSWVAMISGLSKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLE 305
Query: 451 RGWELFNAMFDVYKIQPGPEHYV--SMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGAL- 507
G +L V K+ + YV ++++L G + AE + + D + L
Sbjct: 306 IGEQLHGL---VLKLGFSSDTYVCNALVSLYFHLGNLISAEHIFSNMS-QRDAVTYNTLI 361
Query: 508 --LGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLK 565
L CG+ E E+ + LE D + VV C+ R + H +G
Sbjct: 362 NGLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSADGTLFRGQQLHAYTTKLGFA 421
Query: 566 GVRKVPG 572
K+ G
Sbjct: 422 SNNKIEG 428
>sp|Q9S7F4|PP206_ARATH Putative pentatricopeptide repeat-containing protein At2g01510
OS=Arabidopsis thaliana GN=PCMP-H36 PE=3 SV=1
Length = 825
Score = 303 bits (777), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 193/662 (29%), Positives = 322/662 (48%), Gaps = 87/662 (13%)
Query: 23 KRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNV--------- 73
+RG + A+ ++ MP +N VS N M+SG ++ G +S AR LF+ MP+R V
Sbjct: 60 RRGQVSAARKVYDEMPHKNTVSTNTMISGHVKTGDVSSARDLFDAMPDRTVVTWTILMGW 119
Query: 74 ----------------------------VSWTAMICGLADA------GRV---------- 89
V++T ++ G DA G+V
Sbjct: 120 YARNSHFDEAFKLFRQMCRSSSCTLPDHVTFTTLLPGCNDAVPQNAVGQVHAFAVKLGFD 179
Query: 90 ---------------CEARKL------FEEMPERNVVSWNSMVVGLIRNGELNEARKVFN 128
CE R+L FEE+PE++ V++N+++ G ++G E+ +F
Sbjct: 180 TNPFLTVSNVLLKSYCEVRRLDLACVLFEEIPEKDSVTFNTLITGYEKDGLYTESIHLFL 239
Query: 129 SMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTS--------MISGYCRAG 180
M + +G ++ + L +++ +V T S ++ Y +
Sbjct: 240 KMRQSGHQPSDFTFSGVLKAVVGLHDFALGQQLHALSVTTGFSRDASVGNQILDFYSKHD 299
Query: 181 EVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNS 240
V E LF MP + VS+ +I ++ ++ SL F EM+ + + N + S
Sbjct: 300 RVLETRMLFDEMPELDFVSYNVVISSYSQADQYEASLHFFREMQCMGFDRRNFPFATMLS 359
Query: 241 MINGY--IRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAV 298
+ ++ GR Q L T + S++D Y A +F ++P R V
Sbjct: 360 IAANLSSLQMGRQLHCQALLATADSILHVG-NSLVDMYAKCEMFEEAELIFKSLPQRTTV 418
Query: 299 AWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVL 358
+WTA+ISG VQ L LF +MR + +TF+ + A+ + A++ LG+Q+H +
Sbjct: 419 SWTALISGYVQKGLHGAGLKLFTKMRGSNLRADQSTFATVLKASASFASLLLGKQLHAFI 478
Query: 359 MKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETL 418
+++ + ++ + L+ MYAKCG I +A +F M R+ VSWN+++ + +G +
Sbjct: 479 IRSGNLENVFSGSGLVDMYAKCGSIKDAVQVFEEMPDRNAVSWNALISAHADNGDGEAAI 538
Query: 419 KVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINL 478
F M+ESG P+SV+ LG+L+ACSH G V +G E F AM +Y I P +HY M++L
Sbjct: 539 GAFAKMIESGLQPDSVSILGVLTACSHCGFVEQGTEYFQAMSPIYGITPKKKHYACMLDL 598
Query: 479 LGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPL-NAP 537
LGR G+ EAE+ + +PFEPD +W ++L AC N +AE AA++L ++ L +A
Sbjct: 599 LGRNGRFAEAEKLMDEMPFEPDEIMWSSVLNACRI-HKNQSLAERAAEKLFSMEKLRDAA 657
Query: 538 AHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAE 597
A+V + NIYAA+G + ++ M +G++KVP SW+ N I +F S D+ E
Sbjct: 658 AYVSMSNIYAAAGEWEKVRDVKKAMRERGIKKVPAYSWVEVNHKIHVFSSNDQTHPNGDE 717
Query: 598 IL 599
I+
Sbjct: 718 IV 719
Score = 189 bits (480), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 133/503 (26%), Positives = 237/503 (47%), Gaps = 26/503 (5%)
Query: 46 NAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVV 105
N ++ L+ G++S AR++++EMP +N VS MI G G V AR LF+ MP+R VV
Sbjct: 52 NFIVEDLLRRGQVSAARKVYDEMPHKNTVSTNTMISGHVKTGDVSSARDLFDAMPDRTVV 111
Query: 106 SWNSMVVGLIRNGELNEARKVFNSM------PIKNVISWNAMIAG---YVECCMMGE--A 154
+W ++ RN +EA K+F M + + +++ ++ G V +G+ A
Sbjct: 112 TWTILMGWYARNSHFDEAFKLFRQMCRSSSCTLPDHVTFTTLLPGCNDAVPQNAVGQVHA 171
Query: 155 IVLFEEMEERNVVTWTS-MISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFH 213
+ + +T ++ ++ YC ++ LF +P K+ V++ +I G+ +G +
Sbjct: 172 FAVKLGFDTNPFLTVSNVLLKSYCEVRRLDLACVLFEEIPEKDSVTFNTLITGYEKDGLY 231
Query: 214 KESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPV-RDEISWTSM 272
ES+ LF++M+ ++ + G F ++ L T RD +
Sbjct: 232 TESIHLFLKMRQSGHQPSDFTFSGVLKAVVGLHDFALGQQLHALSVTTGFSRDASVGNQI 291
Query: 273 IDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLN 332
+D Y +V LF MP+ D V++ +IS Q + + + + F EM+ G N
Sbjct: 292 LDFYSKHDRVLETRMLFDEMPELDFVSYNVVISSYSQADQYEASLHFFREMQCMGFDRRN 351
Query: 333 ATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSN 392
F+ + A +++ +GRQ+HC + ++S L + N L+ MYAKC + + A IF +
Sbjct: 352 FPFATMLSIAANLSSLQMGRQLHCQALLATADSILHVGNSLVDMYAKCEMFEEAELIFKS 411
Query: 393 MVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSA-CSHAGLVSR 451
+ R VSW +++ G+ GL LK+F M S + TF +L A S A L
Sbjct: 412 LPQRTTVSWTALISGYVQKGLHGAGLKLFTKMRGSNLRADQSTFATVLKASASFASL--- 468
Query: 452 GWELFNAMFDVYKIQPGPEHYV----SMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGAL 507
L + I+ G V ++++ + G IK+A + +P + + W AL
Sbjct: 469 ---LLGKQLHAFIIRSGNLENVFSGSGLVDMYAKCGSIKDAVQVFEEMP-DRNAVSWNAL 524
Query: 508 LGACGFCEGNAEIAEHAAKRLLE 530
+ A G+ E A A +++E
Sbjct: 525 ISAHA-DNGDGEAAIGAFAKMIE 546
Score = 111 bits (278), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 63/221 (28%), Positives = 113/221 (51%), Gaps = 4/221 (1%)
Query: 226 ICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNA 285
I G + + N ++ +R G++ A+ ++D +P ++ +S +MI G++ G VS+A
Sbjct: 39 IIKTGFDTDTCRSNFIVEDLLRRGQVSAARKVYDEMPHKNTVSTNTMISGHVKTGDVSSA 98
Query: 286 YYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEM--RAHGVPPLNATFSVLFGAAG 343
LF MPDR V WT ++ +N F EA LF +M + P + TF+ L
Sbjct: 99 RDLFDAMPDRTVVTWTILMGWYARNSHFDEAFKLFRQMCRSSSCTLPDHVTFTTLLPGCN 158
Query: 344 ATANIDLGRQIHCVLMKTESESD--LILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSW 401
+ Q+H +K +++ L + N L+ Y + +D A +F + +D V++
Sbjct: 159 DAVPQNAVGQVHAFAVKLGFDTNPFLTVSNVLLKSYCEVRRLDLACVLFEEIPEKDSVTF 218
Query: 402 NSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSA 442
N+++ G+ GL E++ +F M +SG P+ TF G+L A
Sbjct: 219 NTLITGYEKDGLYTESIHLFLKMRQSGHQPSDFTFSGVLKA 259
Score = 80.1 bits (196), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 73/297 (24%), Positives = 132/297 (44%), Gaps = 36/297 (12%)
Query: 11 VVHLTSSITK-YSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMP 69
++H+ +S+ Y+K +EA+ +F+ +PQR VS+ A++SG++Q G +LF +M
Sbjct: 385 ILHVGNSLVDMYAKCEMFEEAELIFKSLPQRTTVSWTALISGYVQKGLHGAGLKLFTKMR 444
Query: 70 ERNVVSWTAMICGLADAGRVCEARKLFEEMPE--------RNVVSWNSMVVGLIRNGELN 121
N+ + + + A + L +++ NV S + +V + G +
Sbjct: 445 GSNLRADQSTFATVLKASASFASLLLGKQLHAFIIRSGNLENVFSGSGLVDMYAKCGSIK 504
Query: 122 EARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEER----NVVTWTSMISGYC 177
+A +VF MP +N +SWNA+I+ + + AI F +M E + V+ +++
Sbjct: 505 DAVQVFEEMPDRNAVSWNALISAHADNGDGEAAIGAFAKMIESGLQPDSVSILGVLTACS 564
Query: 178 RAGEVEEGYCLFRRM-------PRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDN- 229
G VE+G F+ M P+K + M+ NG E+ L EM D
Sbjct: 565 HCGFVEQGTEYFQAMSPIYGITPKKK--HYACMLDLLGRNGRFAEAEKLMDEMPFEPDEI 622
Query: 230 -----GNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQ 281
N C + S+ A+ LF +RD ++ SM + Y + G+
Sbjct: 623 MWSSVLNACRIHKNQSLAE--------RAAEKLFSMEKLRDAAAYVSMSNIYAAAGE 671
>sp|O82380|PP175_ARATH Pentatricopeptide repeat-containing protein At2g29760,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H33 PE=2
SV=1
Length = 738
Score = 302 bits (774), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 182/559 (32%), Positives = 290/559 (51%), Gaps = 25/559 (4%)
Query: 47 AMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVS 106
A LS F L AR++F+E+P+ N +W +I A + F +M +
Sbjct: 72 AALSSF---ASLEYARKVFDEIPKPNSFAWNTLIRAYASGPDPVLSIWAFLDMVSESQCY 128
Query: 107 WNSMVVGLIRNGELNEAR----KVFNSMPIK-----NVISWNAMIAGYVECCMMGEAIVL 157
N + + + + M +K +V N++I Y C + A +
Sbjct: 129 PNKYTFPFLIKAAAEVSSLSLGQSLHGMAVKSAVGSDVFVANSLIHCYFSCGDLDSACKV 188
Query: 158 FEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNV-VSWTAMIGGFAW-----NG 211
F ++E++VV+W SMI+G+ + G ++ LF++M ++V S M+G + N
Sbjct: 189 FTTIKEKDVVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRNL 248
Query: 212 FHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTS 271
+ +IE +N N N+ N+M++ Y + G +E+A+ LFD + +D ++WT+
Sbjct: 249 EFGRQVCSYIE-----ENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTT 303
Query: 272 MIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPL 331
M+DGY A + ++MP +D VAW A+IS QN EA +F E++ L
Sbjct: 304 MLDGYAISEDYEAAREVLNSMPQKDIVAWNALISAYEQNGKPNEALIVFHELQLQKNMKL 363
Query: 332 NA-TFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIF 390
N T A ++LGR IH + K + + + LI MY+KCG ++ + +F
Sbjct: 364 NQITLVSTLSACAQVGALELGRWIHSYIKKHGIRMNFHVTSALIHMYSKCGDLEKSREVF 423
Query: 391 SNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVS 450
+++ RD+ W++M+ G + HG NE + +F M E+ PN VTF + ACSH GLV
Sbjct: 424 NSVEKRDVFVWSAMIGGLAMHGCGNEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVD 483
Query: 451 RGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGA 510
LF+ M Y I P +HY ++++LGR+G +++A +F+ +P P +WGALLGA
Sbjct: 484 EAESLFHQMESNYGIVPEEKHYACIVDVLGRSGYLEKAVKFIEAMPIPPSTSVWGALLGA 543
Query: 511 CGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKV 570
C N +AE A RLLEL+P N AHV+L NIYA G+ +LR M + G++K
Sbjct: 544 CKI-HANLNLAEMACTRLLELEPRNDGAHVLLSNIYAKLGKWENVSELRKHMRVTGLKKE 602
Query: 571 PGCSWLMRNGGIQMFLSGD 589
PGCS + +G I FLSGD
Sbjct: 603 PGCSSIEIDGMIHEFLSGD 621
Score = 137 bits (345), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 100/371 (26%), Positives = 181/371 (48%), Gaps = 25/371 (6%)
Query: 41 NVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMP 100
+V N+++ + G L A ++F + E++VVSW +MI G G +A +LF++M
Sbjct: 165 DVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFVQKGSPDKALELFKKME 224
Query: 101 ERNVVSWNSMVVGL------IRNGELNEARKVFNSMPIK----NVISWNAMIAGYVECCM 150
+V + + +VG+ IRN E R+V + + N+ NAM+ Y +C
Sbjct: 225 SEDVKASHVTMVGVLSACAKIRNLEF--GRQVCSYIEENRVNVNLTLANAMLDMYTKCGS 282
Query: 151 MGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWN 210
+ +A LF+ MEE++ VTWT+M+ GY + + E + MP+K++V+W A+I + N
Sbjct: 283 IEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNSMPQKDIVAWNALISAYEQN 342
Query: 211 GFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVP---VRDEI 267
G E+L++F E++ N + S ++ + G LE + + + +R
Sbjct: 343 GKPNEALIVFHELQ--LQKNMKLNQITLVSTLSACAQVGALELGRWIHSYIKKHGIRMNF 400
Query: 268 SWTS-MIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAH 326
TS +I Y G + + +F+++ RD W+AMI GL + EA +F +M+
Sbjct: 401 HVTSALIHMYSKCGDLEKSREVFNSVEKRDVFVWSAMIGGLAMHGCGNEAVDMFYKMQEA 460
Query: 327 GVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILEN----CLISMYAKCGV 382
V P TF+ +F A T +D + + + ES ++ E C++ + + G
Sbjct: 461 NVKPNGVTFTNVFCACSHTGLVD---EAESLFHQMESNYGIVPEEKHYACIVDVLGRSGY 517
Query: 383 IDNAYNIFSNM 393
++ A M
Sbjct: 518 LEKAVKFIEAM 528
Score = 118 bits (296), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 107/464 (23%), Positives = 193/464 (41%), Gaps = 126/464 (27%)
Query: 16 SSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVS 75
S I Y G +D A +F + +++VVS+N+M++GF+Q G +A LF++M +V +
Sbjct: 171 SLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFVQKGSPDKALELFKKMESEDVKA 230
Query: 76 WTAMICGLADA---------------------------------------GRVCEARKLF 96
+ G+ A G + +A++LF
Sbjct: 231 SHVTMVGVLSACAKIRNLEFGRQVCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLF 290
Query: 97 EEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIV 156
+ M E++ V+W +M+ G + + AR+V NSMP K++++WNA+I+ Y + EA++
Sbjct: 291 DAMEEKDNVTWTTMLDGYAISEDYEAAREVLNSMPQKDIVAWNALISAYEQNGKPNEALI 350
Query: 157 LFEEME-----ERNVVTWTSMISG-----------------------------------Y 176
+F E++ + N +T S +S Y
Sbjct: 351 VFHELQLQKNMKLNQITLVSTLSACAQVGALELGRWIHSYIKKHGIRMNFHVTSALIHMY 410
Query: 177 CRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQ 236
+ G++E+ +F + +++V W+AMIGG A +G E++ +F +M Q
Sbjct: 411 SKCGDLEKSREVFNSVEKRDVFVWSAMIGGLAMHGCGNEAVDMFYKM------------Q 458
Query: 237 SCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRD 296
N NG +++T++ G V A LFH M
Sbjct: 459 EANVKPNG----------------------VTFTNVFCACSHTGLVDEAESLFHQMESNY 496
Query: 297 AVA----WTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGR 352
+ A I ++ ++E F+E A +PP + + L GA AN++L
Sbjct: 497 GIVPEEKHYACIVDVLGRSGYLEKAVKFIE--AMPIPPSTSVWGALLGACKIHANLNLAE 554
Query: 353 QIHCVLMKTESESD---LILENCLISMYAKCGVIDNAYNIFSNM 393
L++ E +D ++L N +YAK G +N + +M
Sbjct: 555 MACTRLLELEPRNDGAHVLLSN----IYAKLGKWENVSELRKHM 594
>sp|Q9LUJ2|PP249_ARATH Pentatricopeptide repeat-containing protein At3g22690
OS=Arabidopsis thaliana GN=PCMP-H56 PE=2 SV=1
Length = 842
Score = 300 bits (768), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 184/574 (32%), Positives = 312/574 (54%), Gaps = 20/574 (3%)
Query: 40 RNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEM 99
+++ N+++ + + G L AR++F+EM ERNVVSWT+MICG A +A LF M
Sbjct: 167 KDLFVQNSLVHFYAECGELDSARKVFDEMSERNVVSWTSMICGYARRDFAKDAVDLFFRM 226
Query: 100 PERNVVSWNSMVVGLIRNG-----ELNEARKVF----NSMPIKNVISWNAMIAGYVECCM 150
V+ NS+ + + + +L KV+ NS N + +A++ Y++C
Sbjct: 227 VRDEEVTPNSVTMVCVISACAKLEDLETGEKVYAFIRNSGIEVNDLMVSALVDMYMKCNA 286
Query: 151 MGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRM----PRKNVVSWTAMIGG 206
+ A LF+E N+ +M S Y R G E +F M R + +S + I
Sbjct: 287 IDVAKRLFDEYGASNLDLCNAMASNYVRQGLTREALGVFNLMMDSGVRPDRISMLSAISS 346
Query: 207 FAWNGFHKESLLLFIEMKG-ICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRD 265
+ ++L G + NG CN++I+ Y++ R + A +FD + +
Sbjct: 347 CS----QLRNILWGKSCHGYVLRNGFESWDNICNALIDMYMKCHRQDTAFRIFDRMSNKT 402
Query: 266 EISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRA 325
++W S++ GY+ G+V A+ F MP+++ V+W +ISGLVQ LF EA +F M++
Sbjct: 403 VVTWNSIVAGYVENGEVDAAWETFETMPEKNIVSWNTIISGLVQGSLFEEAIEVFCSMQS 462
Query: 326 H-GVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVID 384
GV T + A G +DL + I+ + K + D+ L L+ M+++CG +
Sbjct: 463 QEGVNADGVTMMSIASACGHLGALDLAKWIYYYIEKNGIQLDVRLGTTLVDMFSRCGDPE 522
Query: 385 NAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACS 444
+A +IF+++ +RD+ +W + + + G A +++F+ M+E G P+ V F+G L+ACS
Sbjct: 523 SAMSIFNSLTNRDVSAWTAAIGAMAMAGNAERAIELFDDMIEQGLKPDGVAFVGALTACS 582
Query: 445 HAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIW 504
H GLV +G E+F +M ++ + P HY M++LLGRAG ++EA + + +P EP+ IW
Sbjct: 583 HGGLVQQGKEIFYSMLKLHGVSPEDVHYGCMVDLLGRAGLLEEAVQLIEDMPMEPNDVIW 642
Query: 505 GALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGL 564
+LL AC +GN E+A +AA+++ L P ++V+L N+YA++GR + K+R+ M
Sbjct: 643 NSLLAACRV-QGNVEMAAYAAEKIQVLAPERTGSYVLLSNVYASAGRWNDMAKVRLSMKE 701
Query: 565 KGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
KG+RK PG S + G F SGD+ ++ I
Sbjct: 702 KGLRKPPGTSSIQIRGKTHEFTSGDESHPEMPNI 735
Score = 123 bits (308), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 117/485 (24%), Positives = 205/485 (42%), Gaps = 88/485 (18%)
Query: 6 HPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLF 65
+ K L V S + Y++ G +D A+ +F M +RNVVS+ +M+ G+ + +A LF
Sbjct: 165 YAKDLFVQ-NSLVHFYAECGELDSARKVFDEMSERNVVSWTSMICGYARRDFAKDAVDLF 223
Query: 66 ------EEMPERN-----VVSWTA-------------------------MICGLADAGRV 89
EE+ + V+S A M+ L D
Sbjct: 224 FRMVRDEEVTPNSVTMVCVISACAKLEDLETGEKVYAFIRNSGIEVNDLMVSALVDMYMK 283
Query: 90 CE----ARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSM--------------- 130
C A++LF+E N+ N+M +R G EA VFN M
Sbjct: 284 CNAIDVAKRLFDEYGASNLDLCNAMASNYVRQGLTREALGVFNLMMDSGVRPDRISMLSA 343
Query: 131 -----PIKNVI---------------SW----NAMIAGYVECCMMGEAIVLFEEMEERNV 166
++N++ SW NA+I Y++C A +F+ M + V
Sbjct: 344 ISSCSQLRNILWGKSCHGYVLRNGFESWDNICNALIDMYMKCHRQDTAFRIFDRMSNKTV 403
Query: 167 VTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGI 226
VTW S+++GY GEV+ + F MP KN+VSW +I G +E++ +F M+
Sbjct: 404 VTWNSIVAGYVENGEVDAAWETFETMPEKNIVSWNTIISGLVQGSLFEEAIEVFCSMQS- 462
Query: 227 CDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVR----DEISWTSMIDGYLSVGQV 282
G N + + S+ + G L+ A+ ++ + D T+++D + G
Sbjct: 463 -QEGVNADGVTMMSIASACGHLGALDLAKWIYYYIEKNGIQLDVRLGTTLVDMFSRCGDP 521
Query: 283 SNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAA 342
+A +F+++ +RD AWTA I + A LF +M G+ P F A
Sbjct: 522 ESAMSIFNSLTNRDVSAWTAAIGAMAMAGNAERAIELFDDMIEQGLKPDGVAFVGALTAC 581
Query: 343 GATANIDLGRQIHCVLMKTESES-DLILENCLISMYAKCGVIDNAYNIFSNM-VSRDLVS 400
+ G++I ++K S + + C++ + + G+++ A + +M + + V
Sbjct: 582 SHGGLVQQGKEIFYSMLKLHGVSPEDVHYGCMVDLLGRAGLLEEAVQLIEDMPMEPNDVI 641
Query: 401 WNSMV 405
WNS++
Sbjct: 642 WNSLL 646
Score = 109 bits (272), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 98/385 (25%), Positives = 162/385 (42%), Gaps = 52/385 (13%)
Query: 120 LNEARKVF-NSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEM----------------- 161
L+ A++VF NS +N++I GY + EAI+LF M
Sbjct: 83 LSFAKEVFENSESYGTCFMYNSLIRGYASSGLCNEAILLFLRMMNSGISPDKYTFPFGLS 142
Query: 162 ----------------------EERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVS 199
+++ S++ Y GE++ +F M +NVVS
Sbjct: 143 ACAKSRAKGNGIQIHGLIVKMGYAKDLFVQNSLVHFYAECGELDSARKVFDEMSERNVVS 202
Query: 200 WTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLF- 258
WT+MI G+A F K+++ LF M + D N + +I+ + LE + ++
Sbjct: 203 WTSMICGYARRDFAKDAVDLFFRM--VRDEEVTPNSVTMVCVISACAKLEDLETGEKVYA 260
Query: 259 ----DTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFV 314
+ V D + ++++D Y+ + A LF + AM S V+ L
Sbjct: 261 FIRNSGIEVND-LMVSALVDMYMKCNAIDVAKRLFDEYGASNLDLCNAMASNYVRQGLTR 319
Query: 315 EATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLI 374
EA +F M GV P + + NI G+ H +++ ES + N LI
Sbjct: 320 EALGVFNLMMDSGVRPDRISMLSAISSCSQLRNILWGKSCHGYVLRNGFESWDNICNALI 379
Query: 375 SMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSV 434
MY KC D A+ IF M ++ +V+WNS+V G+ +G + + FE+M E N V
Sbjct: 380 DMYMKCHRQDTAFRIFDRMSNKTVVTWNSIVAGYVENGEVDAAWETFETMPE----KNIV 435
Query: 435 TFLGILSACSHAGLVSRGWELFNAM 459
++ I+S L E+F +M
Sbjct: 436 SWNTIISGLVQGSLFEEAIEVFCSM 460
Score = 76.6 bits (187), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 72/285 (25%), Positives = 131/285 (45%), Gaps = 18/285 (6%)
Query: 18 ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWT 77
I Y K D A +F M + VV++N++++G+++NG + A FE MPE+N+VSW
Sbjct: 379 IDMYMKCHRQDTAFRIFDRMSNKTVVTWNSIVAGYVENGEVDAAWETFETMPEKNIVSWN 438
Query: 78 AMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRN-----GELNEARKVFNSMPI 132
+I GL EA ++F M + V+ + + + I + G L+ A+ ++ +
Sbjct: 439 TIISGLVQGSLFEEAIEVFCSMQSQEGVNADGVTMMSIASACGHLGALDLAKWIYYYIE- 497
Query: 133 KNVISWN-----AMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYC 187
KN I + ++ + C A+ +F + R+V WT+ I AG E
Sbjct: 498 KNGIQLDVRLGTTLVDMFSRCGDPESAMSIFNSLTNRDVSAWTAAIGAMAMAGNAERAIE 557
Query: 188 LFRRMPRKNV----VSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMIN 243
LF M + + V++ + + G ++ +F M + +G + M++
Sbjct: 558 LFDDMIEQGLKPDGVAFVGALTACSHGGLVQQGKEIFYSMLKL--HGVSPEDVHYGCMVD 615
Query: 244 GYIRFGRLEEAQNLFDTVPVR-DEISWTSMIDGYLSVGQVSNAYY 287
R G LEEA L + +P+ +++ W S++ G V A Y
Sbjct: 616 LLGRAGLLEEAVQLIEDMPMEPNDVIWNSLLAACRVQGNVEMAAY 660
Score = 42.4 bits (98), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 40/173 (23%), Positives = 79/173 (45%), Gaps = 12/173 (6%)
Query: 347 NIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDN---AYNIFSNMVSR-DLVSWN 402
ID + H L K ++D+ L++ + G ++ A +F N S +N
Sbjct: 44 TIDELKMFHRSLTKQGLDNDVSTITKLVARSCELGTRESLSFAKEVFENSESYGTCFMYN 103
Query: 403 SMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDV 462
S++ G++ GL NE + +F M+ SG P+ TF LSAC+ + G ++ +
Sbjct: 104 SLIRGYASSGLCNEAILLFLRMMNSGISPDKYTFPFGLSACAKSRAKGNGIQIHGL---I 160
Query: 463 YKIQPGPEHYV--SMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGF 513
K+ + +V S+++ G++ A + + E + W +++ CG+
Sbjct: 161 VKMGYAKDLFVQNSLVHFYAECGELDSARKVFDEMS-ERNVVSWTSMI--CGY 210
>sp|Q9SN39|PP320_ARATH Pentatricopeptide repeat-containing protein At4g18750,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H45 PE=2
SV=1
Length = 871
Score = 299 bits (766), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 168/533 (31%), Positives = 288/533 (54%), Gaps = 18/533 (3%)
Query: 70 ERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNS 129
ERN V +++ RV ARK+F+EM ER+V+SWNS++ G + NG + VF
Sbjct: 228 ERNSVG-NSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQ 286
Query: 130 MPIKNV-ISWNAMIAGYVECC-----MMGEAI--VLFEEMEERNVVTWTSMISGYCRAGE 181
M + + I +++ + C +G A+ + + R +++ Y + G+
Sbjct: 287 MLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSREDRFCNTLLDMYSKCGD 346
Query: 182 VEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSM 241
++ +FR M ++VVS+T+MI G+A G E++ LF EM+ + G + +V + ++
Sbjct: 347 LDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEME---EEGISPDVYTVTAV 403
Query: 242 INGYIRFGRLEEAQNLFDTVPVRDE----ISWTSMIDGYLSVGQVSNAYYLFHNMPDRDA 297
+N R+ L+E + + + + D +++D Y G + A +F M +D
Sbjct: 404 LNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAELVFSEMRVKDI 463
Query: 298 VAWTAMISGLVQNELFVEATYLF-MEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHC 356
++W +I G +N EA LF + + P T + + A + + D GR+IH
Sbjct: 464 ISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPACASLSAFDKGREIHG 523
Query: 357 VLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANE 416
+M+ SD + N L+ MYAKCG + A+ +F ++ S+DLVSW M+ G+ HG E
Sbjct: 524 YIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDDIASKDLVSWTVMIAGYGMHGFGKE 583
Query: 417 TLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMI 476
+ +F M ++G + ++F+ +L ACSH+GLV GW FN M KI+P EHY ++
Sbjct: 584 AIALFNQMRQAGIEADEISFVSLLYACSHSGLVDEGWRFFNIMRHECKIEPTVEHYACIV 643
Query: 477 NLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNA 536
++L R G + +A F+ +P PD IWGALL C + ++AE A+++ EL+P N
Sbjct: 644 DMLARTGDLIKAYRFIENMPIPPDATIWGALLCGCRI-HHDVKLAEKVAEKVFELEPENT 702
Query: 537 PAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGD 589
+V++ NIYA + + + +LR +G +G+RK PGCSW+ G + +F++GD
Sbjct: 703 GYYVLMANIYAEAEKWEQVKRLRKRIGQRGLRKNPGCSWIEIKGRVNIFVAGD 755
Score = 142 bits (358), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 121/475 (25%), Positives = 214/475 (45%), Gaps = 77/475 (16%)
Query: 16 SSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEM----PER 71
S + Y K +D A+ +F M +R+V+S+N++++G++ NG + +F +M E
Sbjct: 235 SLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLVSGIEI 294
Query: 72 NVVSWTAMICGLADAGRVCEARKL----FEEMPERNVVSWNSMVVGLIRNGELNEARKVF 127
++ + ++ G AD+ + R + + R N+++ + G+L+ A+ VF
Sbjct: 295 DLATIVSVFAGCADSRLISLGRAVHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVF 354
Query: 128 NSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEE------------------------ 163
M ++V+S+ +MIAGY + GEA+ LFEEMEE
Sbjct: 355 REMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLD 414
Query: 164 --RNVVTW-------------TSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFA 208
+ V W +++ Y + G ++E +F M K+++SW +IGG++
Sbjct: 415 EGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAELVFSEMRVKDIISWNTIIGGYS 474
Query: 209 WNGFHKESLLLF---IEMKGICDNGNN--CNVQSCNSM--------INGYI-RFGRLEEA 254
N + E+L LF +E K + C + +C S+ I+GYI R G
Sbjct: 475 KNCYANEALSLFNLLLEEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMRNGYFS-- 532
Query: 255 QNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFV 314
D S++D Y G + A+ LF ++ +D V+WT MI+G +
Sbjct: 533 ----------DRHVANSLVDMYAKCGALLLAHMLFDDIASKDLVSWTVMIAGYGMHGFGK 582
Query: 315 EATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILEN--C 372
EA LF +MR G+ +F L A + +D G + + M+ E + + +E+ C
Sbjct: 583 EAIALFNQMRQAGIEADEISFVSLLYACSHSGLVDEGWRFFNI-MRHECKIEPTVEHYAC 641
Query: 373 LISMYAKCGVIDNAYNIFSNM-VSRDLVSWNSMVMGFSHHGLANETLKVFESMLE 426
++ M A+ G + AY NM + D W +++ G H KV E + E
Sbjct: 642 IVDMLARTGDLIKAYRFIENMPIPPDATIWGALLCGCRIHHDVKLAEKVAEKVFE 696
Score = 141 bits (356), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 116/474 (24%), Positives = 205/474 (43%), Gaps = 67/474 (14%)
Query: 39 QRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEE 98
R+V N L F ++G L A +L + ++ T L ++C K ++
Sbjct: 58 DRSVTDANTQLRRFCESGNLENAVKLLCVSGKWDIDPRT-----LCSVLQLCADSKSLKD 112
Query: 99 MPE-RNVVSWNSMVVG----------LIRNGELNEARKVFNSMPIKNVISWNAMIAGYVE 147
E N + N V+ G+L EA +VF+ + I+ + WN ++ +
Sbjct: 113 GKEVDNFIRGNGFVIDSNLGSKLSLMYTNCGDLKEASRVFDEVKIEKALFWNILMNELAK 172
Query: 148 CCMMGEAIVLFEEM----------------------------------------EERNVV 167
+I LF++M ERN V
Sbjct: 173 SGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSVHGGEQLHGFILKSGFGERNSV 232
Query: 168 TWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGIC 227
S+++ Y + V+ +F M ++V+SW ++I G+ NG ++ L +F++M
Sbjct: 233 G-NSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQM---L 288
Query: 228 DNGNNCNVQSCNSMING-----YIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQV 282
+G ++ + S+ G I GR + + D T ++D Y G +
Sbjct: 289 VSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSREDRFCNT-LLDMYSKCGDL 347
Query: 283 SNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAA 342
+A +F M DR V++T+MI+G + L EA LF EM G+ P T + +
Sbjct: 348 DSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCC 407
Query: 343 GATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWN 402
+D G+++H + + + D+ + N L+ MYAKCG + A +FS M +D++SWN
Sbjct: 408 ARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAELVFSEMRVKDIISWN 467
Query: 403 SMVMGFSHHGLANETLKVFESMLESGT-HPNSVTFLGILSACSHAGLVSRGWEL 455
+++ G+S + ANE L +F +LE P+ T +L AC+ +G E+
Sbjct: 468 TIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPACASLSAFDKGREI 521
Score = 40.0 bits (92), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 47/217 (21%), Positives = 90/217 (41%), Gaps = 23/217 (10%)
Query: 11 VVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYN-----------AMLSGFLQNGRLS 59
++ + I YSK + +EA +LF L+ + S + A LS F + +
Sbjct: 463 IISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPACASLSAFDKGREIH 522
Query: 60 EARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGE 119
+R+V + +++ A G + A LF+++ +++VSW M+ G +G
Sbjct: 523 GYIMRNGYFSDRHVAN--SLVDMYAKCGALLLAHMLFDDIASKDLVSWTVMIAGYGMHGF 580
Query: 120 LNEARKVFNSMPIKNV----ISWNAMIAGYVECCMMGEAIVLFEEME-----ERNVVTWT 170
EA +FN M + IS+ +++ ++ E F M E V +
Sbjct: 581 GKEAIALFNQMRQAGIEADEISFVSLLYACSHSGLVDEGWRFFNIMRHECKIEPTVEHYA 640
Query: 171 SMISGYCRAGEVEEGYCLFRRMP-RKNVVSWTAMIGG 206
++ R G++ + Y MP + W A++ G
Sbjct: 641 CIVDMLARTGDLIKAYRFIENMPIPPDATIWGALLCG 677
Score = 37.4 bits (85), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 55/126 (43%), Gaps = 10/126 (7%)
Query: 11 VVHLTSSITKYSKRGFIDEAKALFQLMPQRNV----VSYNAMLSGFLQNGRLSEARRLFE 66
+V T I Y GF EA ALF M Q + +S+ ++L +G + E R F
Sbjct: 565 LVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEADEISFVSLLYACSHSGLVDEGWRFFN 624
Query: 67 EMP-----ERNVVSWTAMICGLADAGRVCEARKLFEEMP-ERNVVSWNSMVVGLIRNGEL 120
M E V + ++ LA G + +A + E MP + W +++ G + ++
Sbjct: 625 IMRHECKIEPTVEHYACIVDMLARTGDLIKAYRFIENMPIPPDATIWGALLCGCRIHHDV 684
Query: 121 NEARKV 126
A KV
Sbjct: 685 KLAEKV 690
>sp|Q9SS83|PP220_ARATH Pentatricopeptide repeat-containing protein At3g09040,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E88 PE=2
SV=1
Length = 1028
Score = 299 bits (766), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 189/637 (29%), Positives = 330/637 (51%), Gaps = 57/637 (8%)
Query: 15 TSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPE---- 70
+S ++ YSK ++ A +F+ + ++N V +NAM+ G+ NG + LF +M
Sbjct: 366 SSLVSMYSKCEKMEAAAKVFEALEEKNDVFWNAMIRGYAHNGESHKVMELFMDMKSSGYN 425
Query: 71 -----------------------------------RNVVSWTAMICGLADAGRVCEARKL 95
+N+ A++ A G + +AR++
Sbjct: 426 IDDFTFTSLLSTCAASHDLEMGSQFHSIIIKKKLAKNLFVGNALVDMYAKCGALEDARQI 485
Query: 96 FEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAI 155
FE M +R+ V+WN+++ +++ +EA +F M + ++S A +A ++ C +
Sbjct: 486 FERMCDRDNVTWNTIIGSYVQDENESEAFDLFKRMNLCGIVSDGACLASTLKACTHVHGL 545
Query: 156 VLFEEME--------ERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGF 207
+++ +R++ T +S+I Y + G +++ +F +P +VVS A+I G+
Sbjct: 546 YQGKQVHCLSVKCGLDRDLHTGSSLIDMYSKCGIIKDARKVFSSLPEWSVVSMNALIAGY 605
Query: 208 AWNGFHKESLLLFIEMKGICDNGNNCN----VQSCNSMINGYIRFGRLEEAQNLFDTVPV 263
+ N +E+++LF EM N + V++C+ + + G Q
Sbjct: 606 SQNNL-EEAVVLFQEMLTRGVNPSEITFATIVEACHKPES--LTLGTQFHGQITKRGFSS 662
Query: 264 RDEISWTSMIDGYLSVGQVSNAYYLFHNMPD-RDAVAWTAMISGLVQNELFVEATYLFME 322
E S++ Y++ ++ A LF + + V WT M+SG QN + EA + E
Sbjct: 663 EGEYLGISLLGMYMNSRGMTEACALFSELSSPKSIVLWTGMMSGHSQNGFYEEALKFYKE 722
Query: 323 MRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGV 382
MR GV P ATF + +++ GR IH ++ + D + N LI MYAKCG
Sbjct: 723 MRHDGVLPDQATFVTVLRVCSVLSSLREGRAIHSLIFHLAHDLDELTSNTLIDMYAKCGD 782
Query: 383 IDNAYNIFSNMVSR-DLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILS 441
+ + +F M R ++VSWNS++ G++ +G A + LK+F+SM +S P+ +TFLG+L+
Sbjct: 783 MKGSSQVFDEMRRRSNVVSWNSLINGYAKNGYAEDALKIFDSMRQSHIMPDEITFLGVLT 842
Query: 442 ACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDH 501
ACSHAG VS G ++F M Y I+ +H M++LLGR G ++EA++F+ +PD
Sbjct: 843 ACSHAGKVSDGRKIFEMMIGQYGIEARVDHVACMVDLLGRWGYLQEADDFIEAQNLKPDA 902
Query: 502 RIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMD 561
R+W +LLGAC G+ E +A++L+EL+P N+ A+V+L NIYA+ G + + LR
Sbjct: 903 RLWSSLLGACRI-HGDDIRGEISAEKLIELEPQNSSAYVLLSNIYASQGCWEKANALRKV 961
Query: 562 MGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
M +GV+KVPG SW+ +F +GDK +++ +I
Sbjct: 962 MRDRGVKKVPGYSWIDVEQRTHIFAAGDKSHSEIGKI 998
Score = 165 bits (418), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 123/516 (23%), Positives = 241/516 (46%), Gaps = 32/516 (6%)
Query: 6 HPKSLVVHLTSS-------ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRL 58
H KSL++ + S + Y+K + A+ F + +++V ++N+MLS + G+
Sbjct: 83 HSKSLILGIDSEGRLGNAIVDLYAKCAQVSYAEKQFDFL-EKDVTAWNSMLSMYSSIGKP 141
Query: 59 SEARR----LFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMP----ERNVVSWNSM 110
+ R LFE N +++ ++ A V R++ M ERN ++
Sbjct: 142 GKVLRSFVSLFENQIFPNKFTFSIVLSTCARETNVEFGRQIHCSMIKMGLERNSYCGGAL 201
Query: 111 VVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEER----NV 166
V + +++AR+VF + N + W + +GYV+ + EA+++FE M + +
Sbjct: 202 VDMYAKCDRISDARRVFEWIVDPNTVCWTCLFSGYVKAGLPEEAVLVFERMRDEGHRPDH 261
Query: 167 VTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGI 226
+ + ++I+ Y R G++++ LF M +VV+W MI G G ++ F M+
Sbjct: 262 LAFVTVINTYIRLGKLKDARLLFGEMSSPDVVAWNVMISGHGKRGCETVAIEYFFNMRKS 321
Query: 227 CDNGNNCNVQSCNSMIN--GYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSN 284
+ S S I + G + A+ + + + +S++ Y ++
Sbjct: 322 SVKSTRSTLGSVLSAIGIVANLDLGLVVHAEAIKLGLASNIYVG-SSLVSMYSKCEKMEA 380
Query: 285 AYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGA 344
A +F + +++ V W AMI G N + LFM+M++ G + TF+ L A
Sbjct: 381 AAKVFEALEEKNDVFWNAMIRGYAHNGESHKVMELFMDMKSSGYNIDDFTFTSLLSTCAA 440
Query: 345 TANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSM 404
+ ++++G Q H +++K + +L + N L+ MYAKCG +++A IF M RD V+WN++
Sbjct: 441 SHDLEMGSQFHSIIIKKKLAKNLFVGNALVDMYAKCGALEDARQIFERMCDRDNVTWNTI 500
Query: 405 VMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYK 464
+ + +E +F+ M G + L AC+H + +G ++
Sbjct: 501 IGSYVQDENESEAFDLFKRMNLCGIVSDGACLASTLKACTHVHGLYQGKQVH-----CLS 555
Query: 465 IQPGPEHYV----SMINLLGRAGKIKEAEEFVLRLP 496
++ G + + S+I++ + G IK+A + LP
Sbjct: 556 VKCGLDRDLHTGSSLIDMYSKCGIIKDARKVFSSLP 591
Score = 147 bits (370), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 116/513 (22%), Positives = 228/513 (44%), Gaps = 82/513 (15%)
Query: 35 QLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPER--------NVVSWTAMICGLADA 86
++P + + + +L L +L ++R++F+EMP+R V ++I G+
Sbjct: 36 HVLPSHDQI-HQRLLEICLGQCKLFKSRKVFDEMPQRLALALRIGKAVHSKSLILGIDSE 94
Query: 87 GR--------------VCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSM-- 130
GR V A K F+ + E++V +WNSM+ G+ + + F S+
Sbjct: 95 GRLGNAIVDLYAKCAQVSYAEKQFDFL-EKDVTAWNSMLSMYSSIGKPGKVLRSFVSLFE 153
Query: 131 ----PIKNVIS---------WNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYC 177
P K S N + C M+ + ERN +++ Y
Sbjct: 154 NQIFPNKFTFSIVLSTCARETNVEFGRQIHCSMIKMGL-------ERNSYCGGALVDMYA 206
Query: 178 RAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQS 237
+ + + +F + N V WT + G+ G +E++L+F M+ D G+
Sbjct: 207 KCDRISDARRVFEWIVDPNTVCWTCLFSGYVKAGLPEEAVLVFERMR---DEGHR----- 258
Query: 238 CNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDA 297
D +++ ++I+ Y+ +G++ +A LF M D
Sbjct: 259 --------------------------PDHLAFVTVINTYIRLGKLKDARLLFGEMSSPDV 292
Query: 298 VAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCV 357
VAW MISG + A F MR V +T + A G AN+DLG +H
Sbjct: 293 VAWNVMISGHGKRGCETVAIEYFFNMRKSSVKSTRSTLGSVLSAIGIVANLDLGLVVHAE 352
Query: 358 LMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANET 417
+K S++ + + L+SMY+KC ++ A +F + ++ V WN+M+ G++H+G +++
Sbjct: 353 AIKLGLASNIYVGSSLVSMYSKCEKMEAAAKVFEALEEKNDVFWNAMIRGYAHNGESHKV 412
Query: 418 LKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMIN 477
+++F M SG + + TF +LS C+ + + G + F+++ K+ ++++
Sbjct: 413 MELFMDMKSSGYNIDDFTFTSLLSTCAASHDLEMGSQ-FHSIIIKKKLAKNLFVGNALVD 471
Query: 478 LLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGA 510
+ + G +++A + R+ + D+ W ++G+
Sbjct: 472 MYAKCGALEDARQIFERMC-DRDNVTWNTIIGS 503
>sp|Q9SVA5|PP357_ARATH Pentatricopeptide repeat-containing protein At4g39530
OS=Arabidopsis thaliana GN=PCMP-E52 PE=1 SV=1
Length = 834
Score = 298 bits (762), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 194/650 (29%), Positives = 314/650 (48%), Gaps = 100/650 (15%)
Query: 39 QRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEE 98
R+V ++ +L++G + AR +F+ +PE++ V+WT MI G GR + +LF +
Sbjct: 180 DRDVYVGTLLIDFYLKDGNIDYARLVFDALPEKSTVTWTTMISGCVKMGRSYVSLQLFYQ 239
Query: 99 MPERNVVS---------------------------------------WNSMVVGLIRNGE 119
+ E NVV N ++ ++ G
Sbjct: 240 LMEDNVVPDGYILSTVLSACSILPFLEGGKQIHAHILRYGLEMDASLMNVLIDSYVKCGR 299
Query: 120 LNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEE---RNVVTWTSMISGY 176
+ A K+FN MP KN+ISW +++GY + + EA+ LF M + + + S I
Sbjct: 300 VIAAHKLFNGMPNKNIISWTTLLSGYKQNALHKEAMELFTSMSKFGLKPDMYACSSILTS 359
Query: 177 CRA------GEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNG 230
C + G Y + + + V+ ++I +A + + + D
Sbjct: 360 CASLHALGFGTQVHAYTIKANLGNDSYVT-NSLIDMYA-------KCDCLTDARKVFDIF 411
Query: 231 NNCNVQSCNSMINGYIRFG---RLEEAQNLFDTVPVR----------------------- 264
+V N+MI GY R G L EA N+F + R
Sbjct: 412 AAADVVLFNAMIEGYSRLGTQWELHEALNIFRDMRFRLIRPSLLTFVSLLRASASLTSLG 471
Query: 265 ----------------DEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLV 308
D + +++ID Y + + ++ +F M +D V W +M +G V
Sbjct: 472 LSKQIHGLMFKYGLNLDIFAGSALIDVYSNCYCLKDSRLVFDEMKVKDLVIWNSMFAGYV 531
Query: 309 QNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLI 368
Q EA LF+E++ P TF+ + AAG A++ LG++ HC L+K E +
Sbjct: 532 QQSENEEALNLFLELQLSRERPDEFTFANMVTAAGNLASVQLGQEFHCQLLKRGLECNPY 591
Query: 369 LENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESG 428
+ N L+ MYAKCG ++A+ F + SRD+V WNS++ +++HG + L++ E M+ G
Sbjct: 592 ITNALLDMYAKCGSPEDAHKAFDSAASRDVVCWNSVISSYANHGEGKKALQMLEKMMSEG 651
Query: 429 THPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEA 488
PN +TF+G+LSACSHAGLV G + F M + I+P EHYV M++LLGRAG++ +A
Sbjct: 652 IEPNYITFVGVLSACSHAGLVEDGLKQFELMLR-FGIEPETEHYVCMVSLLGRAGRLNKA 710
Query: 489 EEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAA 548
E + ++P +P +W +LL C GN E+AEHAA+ + DP ++ + +L NIYA+
Sbjct: 711 RELIEKMPTKPAAIVWRSLLSGCAKA-GNVELAEHAAEMAILSDPKDSGSFTMLSNIYAS 769
Query: 549 SGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
G E K+R M ++GV K PG SW+ N + +FLS DK + +I
Sbjct: 770 KGMWTEAKKVRERMKVEGVVKEPGRSWIGINKEVHIFLSKDKSHCKANQI 819
Score = 155 bits (392), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 112/383 (29%), Positives = 185/383 (48%), Gaps = 19/383 (4%)
Query: 86 AGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMI-AG 144
AG + ARK+FE+MPERN+VSW++MV +G E+ VF S N I +
Sbjct: 92 AGGMVYARKVFEKMPERNLVSWSTMVSACNHHGIYEESLVVFLEFWRTRKDSPNEYILSS 151
Query: 145 YVECC--MMGEAIVLFEEME--------ERNVVTWTSMISGYCRAGEVEEGYCLFRRMPR 194
+++ C + G + +++ +R+V T +I Y + G ++ +F +P
Sbjct: 152 FIQACSGLDGRGRWMVFQLQSFLVKSGFDRDVYVGTLLIDFYLKDGNIDYARLVFDALPE 211
Query: 195 KNVVSWTAMIGGFAWNGFHKESLLLFIEM--KGICDNGNNCNVQSCNSMINGYIRFGRLE 252
K+ V+WT MI G G SL LF ++ + +G + I ++ G+
Sbjct: 212 KSTVTWTTMISGCVKMGRSYVSLQLFYQLMEDNVVPDGYILSTVLSACSILPFLEGGKQI 271
Query: 253 EAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNEL 312
A L + + D +ID Y+ G+V A+ LF+ MP+++ ++WT ++SG QN L
Sbjct: 272 HAHILRYGLEM-DASLMNVLIDSYVKCGRVIAAHKLFNGMPNKNIISWTTLLSGYKQNAL 330
Query: 313 FVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENC 372
EA LF M G+ P S + + + + G Q+H +K +D + N
Sbjct: 331 HKEAMELFTSMSKFGLKPDMYACSSILTSCASLHALGFGTQVHAYTIKANLGNDSYVTNS 390
Query: 373 LISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLA---NETLKVFESMLESGT 429
LI MYAKC + +A +F + D+V +N+M+ G+S G +E L +F M
Sbjct: 391 LIDMYAKCDCLTDARKVFDIFAAADVVLFNAMIEGYSRLGTQWELHEALNIFRDMRFRLI 450
Query: 430 HPNSVTFLGILSACSHAGLVSRG 452
P+ +TF+ +L A A L S G
Sbjct: 451 RPSLLTFVSLLRAS--ASLTSLG 471
Score = 139 bits (349), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 94/328 (28%), Positives = 167/328 (50%), Gaps = 15/328 (4%)
Query: 172 MISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEM-KGICDNG 230
+I+ Y RAG + +F +MP +N+VSW+ M+ +G ++ESL++F+E + D+
Sbjct: 85 LINLYSRAGGMVYARKVFEKMPERNLVSWSTMVSACNHHGIYEESLVVFLEFWRTRKDSP 144
Query: 231 N----NCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAY 286
N + +Q+C S ++G R+ + L + RD T +ID YL G + A
Sbjct: 145 NEYILSSFIQAC-SGLDGRGRWMVFQLQSFLVKSGFDRDVYVGTLLIDFYLKDGNIDYAR 203
Query: 287 YLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATA 346
+F +P++ V WT MISG V+ + LF ++ V P S + A
Sbjct: 204 LVFDALPEKSTVTWTTMISGCVKMGRSYVSLQLFYQLMEDNVVPDGYILSTVLSACSILP 263
Query: 347 NIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVM 406
++ G+QIH +++ E D L N LI Y KCG + A+ +F+ M +++++SW +++
Sbjct: 264 FLEGGKQIHAHILRYGLEMDASLMNVLIDSYVKCGRVIAAHKLFNGMPNKNIISWTTLLS 323
Query: 407 GFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQ 466
G+ + L E +++F SM + G P+ IL++C A L + G F Y I+
Sbjct: 324 GYKQNALHKEAMELFTSMSKFGLKPDMYACSSILTSC--ASLHALG---FGTQVHAYTIK 378
Query: 467 P--GPEHYV--SMINLLGRAGKIKEAEE 490
G + YV S+I++ + + +A +
Sbjct: 379 ANLGNDSYVTNSLIDMYAKCDCLTDARK 406
Score = 72.0 bits (175), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 69/236 (29%), Positives = 95/236 (40%), Gaps = 46/236 (19%)
Query: 364 ESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVF-E 422
E D L N LI++Y++ G + A +F M R+LVSW++MV +HHG+ E+L VF E
Sbjct: 76 ELDTYLSNILINLYSRAGGMVYARKVFEKMPERNLVSWSTMVSACNHHGIYEESLVVFLE 135
Query: 423 SMLESGTHPNSVTFLGILSACSHAGLVSRG-WELFNAMFDVYKIQPGPEHYVS--MINLL 479
PN + ACS GL RG W +F + K + YV +I+
Sbjct: 136 FWRTRKDSPNEYILSSFIQACS--GLDGRGRWMVFQLQSFLVKSGFDRDVYVGTLLIDFY 193
Query: 480 GRAGKIKEAEEFVLRLPFE----------------------------------PDHRIWG 505
+ G I A LP + PD I
Sbjct: 194 LKDGNIDYARLVFDALPEKSTVTWTTMISGCVKMGRSYVSLQLFYQLMEDNVVPDGYILS 253
Query: 506 ALLGACG---FCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKL 558
+L AC F EG +I H + LE+D A VL + Y GR + HKL
Sbjct: 254 TVLSACSILPFLEGGKQIHAHILRYGLEMD---ASLMNVLIDSYVKCGRVIAAHKL 306
>sp|Q9LNU6|PPR53_ARATH Pentatricopeptide repeat-containing protein At1g20230
OS=Arabidopsis thaliana GN=PCMP-H21 PE=2 SV=2
Length = 760
Score = 296 bits (757), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 180/592 (30%), Positives = 304/592 (51%), Gaps = 55/592 (9%)
Query: 58 LSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRN 117
++A + + +P+ + S++++I L A ++ +F M ++ + ++ L +
Sbjct: 66 FNDADLVLQSIPDPTIYSFSSLIYALTKAKLFTQSIGVFSRMFSHGLIPDSHVLPNLFKV 125
Query: 118 GELNEARKVFNSMPIKNVIS---WNAMIAG-----YVECCMMGEAIVLFEEMEERNVVTW 169
A KV + + +S +A + G Y+ C MG+A +F+ M +++VVT
Sbjct: 126 CAELSAFKVGKQIHCVSCVSGLDMDAFVQGSMFHMYMRCGRMGDARKVFDRMSDKDVVTC 185
Query: 170 TSMISGYCRAGEVEEGYCLFRRMPRK----NVVSWTAMIGGFAWNGFHKESLLLF--IEM 223
++++ Y R G +EE + M N+VSW ++ GF +G+HKE++++F I
Sbjct: 186 SALLCAYARKGCLEEVVRILSEMESSGIEANIVSWNGILSGFNRSGYHKEAVVMFQKIHH 245
Query: 224 KGICDN---------------------------------GNNCNVQSCNSMINGYIRFGR 250
G C + + C + ++MI+ Y + G
Sbjct: 246 LGFCPDQVTVSSVLPSVGDSEMLNMGRLIHGYVIKQGLLKDKCVI---SAMIDMYGKSGH 302
Query: 251 LEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDR----DAVAWTAMISG 306
+ +LF+ + + + I G G V A +F ++ + V+WT++I+G
Sbjct: 303 VYGIISLFNQFEMMEAGVCNAYITGLSRNGLVDKALEMFELFKEQTMELNVVSWTSIIAG 362
Query: 307 LVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESD 366
QN +EA LF EM+ GV P + T + A G A + GR H ++ +
Sbjct: 363 CAQNGKDIEALELFREMQVAGVKPNHVTIPSMLPACGNIAALGHGRSTHGFAVRVHLLDN 422
Query: 367 LILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLE 426
+ + + LI MYAKCG I+ + +F+ M +++LV WNS++ GFS HG A E + +FES++
Sbjct: 423 VHVGSALIDMYAKCGRINLSQIVFNMMPTKNLVCWNSLMNGFSMHGKAKEVMSIFESLMR 482
Query: 427 SGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIK 486
+ P+ ++F +LSAC GL GW+ F M + Y I+P EHY M+NLLGRAGK++
Sbjct: 483 TRLKPDFISFTSLLSACGQVGLTDEGWKYFKMMSEEYGIKPRLEHYSCMVNLLGRAGKLQ 542
Query: 487 EAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIY 546
EA + + +PFEPD +WGALL +C + N ++AE AA++L L+P N +V+L NIY
Sbjct: 543 EAYDLIKEMPFEPDSCVWGALLNSCRL-QNNVDLAEIAAEKLFHLEPENPGTYVLLSNIY 601
Query: 547 AASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
AA G E +R M G++K PGCSW+ + L+GDK Q+ +I
Sbjct: 602 AAKGMWTEVDSIRNKMESLGLKKNPGCSWIQVKNRVYTLLAGDKSHPQIDQI 653
Score = 110 bits (274), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 98/410 (23%), Positives = 181/410 (44%), Gaps = 52/410 (12%)
Query: 47 AMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMP----ER 102
+M +++ GR+ +AR++F+ M +++VV+ +A++C A G + E ++ EM E
Sbjct: 156 SMFHMYMRCGRMGDARKVFDRMSDKDVVTCSALLCAYARKGCLEEVVRILSEMESSGIEA 215
Query: 103 NVVSWNSMVVGLIRNGELNEARKVFN-------------------SMPIKNVISWNAMIA 143
N+VSWN ++ G R+G EA +F S+ +++ +I
Sbjct: 216 NIVSWNGILSGFNRSGYHKEAVVMFQKIHHLGFCPDQVTVSSVLPSVGDSEMLNMGRLIH 275
Query: 144 GYV--------ECC------MMGEA------IVLFEEMEERNVVTWTSMISGYCRAGEVE 183
GYV +C M G++ I LF + E + I+G R G V+
Sbjct: 276 GYVIKQGLLKDKCVISAMIDMYGKSGHVYGIISLFNQFEMMEAGVCNAYITGLSRNGLVD 335
Query: 184 EGYCLFRRMPRK----NVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCN 239
+ +F + NVVSWT++I G A NG E+L LF EM+ N+ + S
Sbjct: 336 KALEMFELFKEQTMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNHVTIPSML 395
Query: 240 SMINGYIRFGRLEEAQNLFDTVPVRDEIS-WTSMIDGYLSVGQVSNAYYLFHNMPDRDAV 298
G V + D + +++ID Y G+++ + +F+ MP ++ V
Sbjct: 396 PACGNIAALGHGRSTHGFAVRVHLLDNVHVGSALIDMYAKCGRINLSQIVFNMMPTKNLV 455
Query: 299 AWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVL 358
W ++++G + E +F + + P +F+ L A G D G + + +
Sbjct: 456 CWNSLMNGFSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSACGQVGLTDEGWK-YFKM 514
Query: 359 MKTESESDLILEN--CLISMYAKCGVIDNAYNIFSNM-VSRDLVSWNSMV 405
M E LE+ C++++ + G + AY++ M D W +++
Sbjct: 515 MSEEYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKEMPFEPDSCVWGALL 564
Score = 95.5 bits (236), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 78/385 (20%), Positives = 174/385 (45%), Gaps = 15/385 (3%)
Query: 141 MIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSW 200
+IA Y +A ++ + + + + +++S+I +A + +F RM ++
Sbjct: 56 LIASYSNYNCFNDADLVLQSIPDPTIYSFSSLIYALTKAKLFTQSIGVFSRMFSHGLIPD 115
Query: 201 TAMIGGFAWNGFHKESLLLFIEMKGI-CDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFD 259
+ ++ + + ++ + C +G + + SM + Y+R GR+ +A+ +FD
Sbjct: 116 SHVLPNLFKVCAELSAFKVGKQIHCVSCVSGLDMDAFVQGSMFHMYMRCGRMGDARKVFD 175
Query: 260 TVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMP----DRDAVAWTAMISGLVQNELFVE 315
+ +D ++ ++++ Y G + + M + + V+W ++SG ++ E
Sbjct: 176 RMSDKDVVTCSALLCAYARKGCLEEVVRILSEMESSGIEANIVSWNGILSGFNRSGYHKE 235
Query: 316 ATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLIS 375
A +F ++ G P T S + + G + +++GR IH ++K D + + +I
Sbjct: 236 AVVMFQKIHHLGFCPDQVTVSSVLPSVGDSEMLNMGRLIHGYVIKQGLLKDKCVISAMID 295
Query: 376 MYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVT 435
MY K G + ++F+ + N+ + G S +GL ++ L++FE E N V+
Sbjct: 296 MYGKSGHVYGIISLFNQFEMMEAGVCNAYITGLSRNGLVDKALEMFELFKEQTMELNVVS 355
Query: 436 FLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKI------KEAE 489
+ I++ C+ G ELF M V ++P ++V++ ++L G I +
Sbjct: 356 WTSIIAGCAQNGKDIEALELFREM-QVAGVKP---NHVTIPSMLPACGNIAALGHGRSTH 411
Query: 490 EFVLRLPFEPDHRIWGALLGACGFC 514
F +R+ + + AL+ C
Sbjct: 412 GFAVRVHLLDNVHVGSALIDMYAKC 436
Score = 87.0 bits (214), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 90/366 (24%), Positives = 177/366 (48%), Gaps = 41/366 (11%)
Query: 11 VVHLTSSITKYSKRGFIDEAKALFQLMP----QRNVVSYNAMLSGFLQNGRLSEARRLFE 66
VV ++ + Y+++G ++E + M + N+VS+N +LSGF ++G EA +F+
Sbjct: 182 VVTCSALLCAYARKGCLEEVVRILSEMESSGIEANIVSWNGILSGFNRSGYHKEAVVMFQ 241
Query: 67 EM------PERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLI----R 116
++ P++ VS +++ + D+ + R + + ++ ++ ++ +I +
Sbjct: 242 KIHHLGFCPDQVTVS--SVLPSVGDSEMLNMGRLIHGYVIKQGLLKDKCVISAMIDMYGK 299
Query: 117 NGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEER----NVVTWTSM 172
+G + +FN + NA I G ++ +A+ +FE +E+ NVV+WTS+
Sbjct: 300 SGHVYGIISLFNQFEMMEAGVCNAYITGLSRNGLVDKALEMFELFKEQTMELNVVSWTSI 359
Query: 173 ISGYCRAGEVEEGYCLFRRMP----RKNVVSWTAMI---GGFAWNGFHKESLLLFIEMKG 225
I+G + G+ E LFR M + N V+ +M+ G A G H S F
Sbjct: 360 IAGCAQNGKDIEALELFREMQVAGVKPNHVTIPSMLPACGNIAALG-HGRSTHGFAVRVH 418
Query: 226 ICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNA 285
+ D NV +++I+ Y + GR+ +Q +F+ +P ++ + W S+++G+ G+
Sbjct: 419 LLD-----NVHVGSALIDMYAKCGRINLSQIVFNMMPTKNLVCWNSLMNGFSMHGKAKEV 473
Query: 286 YYLFHN-MPDR---DAVAWTAMISGLVQNELFVEA-TYLFMEMRAHGVPPLNATFSV--- 337
+F + M R D +++T+++S Q L E Y M +G+ P +S
Sbjct: 474 MSIFESLMRTRLKPDFISFTSLLSACGQVGLTDEGWKYFKMMSEEYGIKPRLEHYSCMVN 533
Query: 338 LFGAAG 343
L G AG
Sbjct: 534 LLGRAG 539
Score = 77.0 bits (188), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 82/338 (24%), Positives = 145/338 (42%), Gaps = 33/338 (9%)
Query: 36 LMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKL 95
L+ + V+S AM+ + ++G + LF + A I GL+ G V +A ++
Sbjct: 283 LLKDKCVIS--AMIDMYGKSGHVYGIISLFNQFEMMEAGVCNAYITGLSRNGLVDKALEM 340
Query: 96 FEEMPER----NVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMM 151
FE E+ NVVSW S++ G +NG+ EA ++F M + V + I + C
Sbjct: 341 FELFKEQTMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNHVTIPSMLPAC-- 398
Query: 152 GEAIVLFEEMEER----------NVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWT 201
G L NV +++I Y + G + +F MP KN+V W
Sbjct: 399 GNIAALGHGRSTHGFAVRVHLLDNVHVGSALIDMYAKCGRINLSQIVFNMMPTKNLVCWN 458
Query: 202 AMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTV 261
+++ GF+ +G KE + +F + + + S S+++ + G +E F +
Sbjct: 459 SLMNGFSMHGKAKEVMSIF---ESLMRTRLKPDFISFTSLLSACGQVGLTDEGWKYFKMM 515
Query: 262 PVRDEIS-----WTSMIDGYLSVGQVSNAYYLFHNMP-DRDAVAWTAMI-SGLVQNELFV 314
I ++ M++ G++ AY L MP + D+ W A++ S +QN V
Sbjct: 516 SEEYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKEMPFEPDSCVWGALLNSCRLQNN--V 573
Query: 315 EATYLFMEMRAHGVPPLNATFSVL---FGAAGATANID 349
+ + E H P T+ +L + A G +D
Sbjct: 574 DLAEIAAEKLFHLEPENPGTYVLLSNIYAAKGMWTEVD 611
Score = 61.6 bits (148), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 76/142 (53%), Gaps = 11/142 (7%)
Query: 12 VHLTSS-ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMP- 69
VH+ S+ I Y+K G I+ ++ +F +MP +N+V +N++++GF +G+ E +FE +
Sbjct: 423 VHVGSALIDMYAKCGRINLSQIVFNMMPTKNLVCWNSLMNGFSMHGKAKEVMSIFESLMR 482
Query: 70 ---ERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVS-----WNSMVVGLIRNGELN 121
+ + +S+T+++ G E K F+ M E + ++ MV L R G+L
Sbjct: 483 TRLKPDFISFTSLLSACGQVGLTDEGWKYFKMMSEEYGIKPRLEHYSCMVNLLGRAGKLQ 542
Query: 122 EARKVFNSMPIK-NVISWNAMI 142
EA + MP + + W A++
Sbjct: 543 EAYDLIKEMPFEPDSCVWGALL 564
>sp|Q9LFL5|PP390_ARATH Pentatricopeptide repeat-containing protein At5g16860
OS=Arabidopsis thaliana GN=PCMP-H92 PE=2 SV=1
Length = 850
Score = 295 bits (756), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 190/592 (32%), Positives = 302/592 (51%), Gaps = 43/592 (7%)
Query: 41 NVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMP 100
NV NA+++ + + LS+AR++F+EM +VVSW ++I A G+ A ++F M
Sbjct: 161 NVFVGNALVAMYSRCRSLSDARKVFDEMSVWDVVSWNSIIESYAKLGKPKVALEMFSRMT 220
Query: 101 ER------NVVSWNSM----VVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCM 150
N+ N + +G G+ V + M I+N+ N ++ Y +C M
Sbjct: 221 NEFGCRPDNITLVNVLPPCASLGTHSLGKQLHCFAVTSEM-IQNMFVGNCLVDMYAKCGM 279
Query: 151 MGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMP----RKNVVSWTAMIGG 206
M EA +F M ++VV+W +M++GY + G E+ LF +M + +VV+W+A I G
Sbjct: 280 MDEANTVFSNMSVKDVVSWNAMVAGYSQIGRFEDAVRLFEKMQEEKIKMDVVTWSAAISG 339
Query: 207 FAWNGFHKESLLLFIEMKGIC----DNGNNCNVQSCNSMINGYIRFGRL---EEAQNLFD 259
+A G E+L G+C +G N + S+++G G L +E
Sbjct: 340 YAQRGLGYEAL-------GVCRQMLSSGIKPNEVTLISVLSGCASVGALMHGKEIHCYAI 392
Query: 260 TVPVR--------DEISWTSMIDGYLSVGQVSNAYYLFHNM--PDRDAVAWTAMISGLVQ 309
P+ + + +ID Y +V A +F ++ +RD V WT MI G Q
Sbjct: 393 KYPIDLRKNGHGDENMVINQLIDMYAKCKKVDTARAMFDSLSPKERDVVTWTVMIGGYSQ 452
Query: 310 NELFVEATYLFMEMRAHGVP--PLNATFSVLFGAAGATANIDLGRQIHCVLMKTESES-D 366
+ +A L EM P T S A + A + +G+QIH ++ + +
Sbjct: 453 HGDANKALELLSEMFEEDCQTRPNAFTISCALVACASLAALRIGKQIHAYALRNQQNAVP 512
Query: 367 LILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLE 426
L + NCLI MYAKCG I +A +F NM++++ V+W S++ G+ HG E L +F+ M
Sbjct: 513 LFVSNCLIDMYAKCGSISDARLVFDNMMAKNEVTWTSLMTGYGMHGYGEEALGIFDEMRR 572
Query: 427 SGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIK 486
G + VT L +L ACSH+G++ +G E FN M V+ + PGPEHY +++LLGRAG++
Sbjct: 573 IGFKLDGVTLLVVLYACSHSGMIDQGMEYFNRMKTVFGVSPGPEHYACLVDLLGRAGRLN 632
Query: 487 EAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIY 546
A + +P EP +W A L C G E+ E+AA+++ EL + ++ +L N+Y
Sbjct: 633 AALRLIEEMPMEPPPVVWVAFLSCCRI-HGKVELGEYAAEKITELASNHDGSYTLLSNLY 691
Query: 547 AASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
A +GR + ++R M KGV+K PGCSW+ G F GDK EI
Sbjct: 692 ANAGRWKDVTRIRSLMRHKGVKKRPGCSWVEGIKGTTTFFVGDKTHPHAKEI 743
Score = 162 bits (410), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 145/530 (27%), Positives = 241/530 (45%), Gaps = 59/530 (11%)
Query: 27 IDEAKALFQLMPQRNVVSYNA---MLSGFLQNGRLSEARRLFEEMPERN--VVSWTAMIC 81
I + K + Q + +++ N ++S ++ G LS A L P + V W ++I
Sbjct: 41 ISQVKLIHQKLLSFGILTLNLTSHLISTYISVGCLSHAVSLLRRFPPSDAGVYHWNSLIR 100
Query: 82 GLADAGRVCEARKLFEEM------PERNVVSWNSMVVGLI---RNGELNEARKVFNSMPI 132
D G + LF M P+ + G I R GE A + I
Sbjct: 101 SYGDNGCANKCLYLFGLMHSLSWTPDNYTFPFVFKACGEISSVRCGESAHALSLVTGF-I 159
Query: 133 KNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRM 192
NV NA++A Y C + +A +F+EM +VV+W S+I Y + G+ + +F RM
Sbjct: 160 SNVFVGNALVAMYSRCRSLSDARKVFDEMSVWDVVSWNSIIESYAKLGKPKVALEMFSRM 219
Query: 193 P-----RKNVVSWTAMIGGFAWNGFHK--ESLLLFIEMKGICDNGNNCNVQSCNSMINGY 245
R + ++ ++ A G H + L F + N+ N +++ Y
Sbjct: 220 TNEFGCRPDNITLVNVLPPCASLGTHSLGKQLHCFAVTSEMIQ-----NMFVGNCLVDMY 274
Query: 246 IRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDR----DAVAWT 301
+ G ++EA +F + V+D +SW +M+ GY +G+ +A LF M + D V W+
Sbjct: 275 AKCGMMDEANTVFSNMSVKDVVSWNAMVAGYSQIGRFEDAVRLFEKMQEEKIKMDVVTWS 334
Query: 302 AMISGLVQNELFVEATYLFMEMRAHGVPPLNATF-SVLFGAAGATANIDLGRQIHCVLMK 360
A ISG Q L EA + +M + G+ P T SVL G A A + G++IHC +K
Sbjct: 335 AAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTLISVLSGCASVGALMH-GKEIHCYAIK 393
Query: 361 T--------ESESDLILENCLISMYAKCGVIDNAYNIFSNMV--SRDLVSWNSMVMGFSH 410
+ ++++ N LI MYAKC +D A +F ++ RD+V+W M+ G+S
Sbjct: 394 YPIDLRKNGHGDENMVI-NQLIDMYAKCKKVDTARAMFDSLSPKERDVVTWTVMIGGYSQ 452
Query: 411 HGLANETLKVFESMLESG--THPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPG 468
HG AN+ L++ M E T PN+ T L AC+ + G ++ + + Q
Sbjct: 453 HGDANKALELLSEMFEEDCQTRPNAFTISCALVACASLAALRIGKQIH--AYALRNQQNA 510
Query: 469 PEHYVS--MINLLGRAGKIKEAEEFVLRLPFE----PDHRIWGALLGACG 512
+VS +I++ + G I +A RL F+ + W +L+ G
Sbjct: 511 VPLFVSNCLIDMYAKCGSISDA-----RLVFDNMMAKNEVTWTSLMTGYG 555
Score = 112 bits (280), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 86/301 (28%), Positives = 145/301 (48%), Gaps = 27/301 (8%)
Query: 18 ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPER----NV 73
+ Y+K G +DEA +F M ++VVS+NAM++G+ Q GR +A RLFE+M E +V
Sbjct: 271 VDMYAKCGMMDEANTVFSNMSVKDVVSWNAMVAGYSQIGRFEDAVRLFEKMQEEKIKMDV 330
Query: 74 VSWTAMICGLADAGRVCEA----RKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNS 129
V+W+A I G A G EA R++ + N V+ S++ G G L +++ +
Sbjct: 331 VTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTLISVLSGCASVGALMHGKEI-HC 389
Query: 130 MPIKNVISW------------NAMIAGYVECCMMGEAIVLFEEM--EERNVVTWTSMISG 175
IK I N +I Y +C + A +F+ + +ER+VVTWT MI G
Sbjct: 390 YAIKYPIDLRKNGHGDENMVINQLIDMYAKCKKVDTARAMFDSLSPKERDVVTWTVMIGG 449
Query: 176 YCRAGEVEEGYCLFRRMPRKNVVS----WTAMIGGFAWNGFHKESLLLFIEMKGICDNGN 231
Y + G+ + L M ++ + +T A + I + + N
Sbjct: 450 YSQHGDANKALELLSEMFEEDCQTRPNAFTISCALVACASLAALRIGKQIHAYALRNQQN 509
Query: 232 NCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHN 291
+ N +I+ Y + G + +A+ +FD + ++E++WTS++ GY G A +F
Sbjct: 510 AVPLFVSNCLIDMYAKCGSISDARLVFDNMMAKNEVTWTSLMTGYGMHGYGEEALGIFDE 569
Query: 292 M 292
M
Sbjct: 570 M 570
Score = 109 bits (272), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 110/434 (25%), Positives = 192/434 (44%), Gaps = 34/434 (7%)
Query: 40 RNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEM 99
+N+ N ++ + + G + EA +F M ++VVSW AM+ G + GR +A +LFE+M
Sbjct: 262 QNMFVGNCLVDMYAKCGMMDEANTVFSNMSVKDVVSWNAMVAGYSQIGRFEDAVRLFEKM 321
Query: 100 PER----NVVSWNSMVVGLIRNGELNEA----RKVFNSMPIKNVISWNAMIAG------- 144
E +VV+W++ + G + G EA R++ +S N ++ ++++G
Sbjct: 322 QEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTLISVLSGCASVGAL 381
Query: 145 ----YVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRK--NVV 198
+ C + I L + + +I Y + +V+ +F + K +VV
Sbjct: 382 MHGKEIHCYAIKYPIDLRKNGHGDENMVINQLIDMYAKCKKVDTARAMFDSLSPKERDVV 441
Query: 199 SWTAMIGGFAWNGFHKESLLLFIEM-KGICDNGNN-----CNVQSCNSMINGYIRFGRLE 252
+WT MIGG++ +G ++L L EM + C N C + +C S+ +R G+
Sbjct: 442 TWTVMIGGYSQHGDANKALELLSEMFEEDCQTRPNAFTISCALVACASL--AALRIGKQI 499
Query: 253 EAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNEL 312
A L + +ID Y G +S+A +F NM ++ V WT++++G +
Sbjct: 500 HAYALRNQQNAVPLFVSNCLIDMYAKCGSISDARLVFDNMMAKNEVTWTSLMTGYGMHGY 559
Query: 313 FVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILEN- 371
EA +F EMR G T V+ A + ID G + + MKT E+
Sbjct: 560 GEEALGIFDEMRRIGFKLDGVTLLVVLYACSHSGMIDQGME-YFNRMKTVFGVSPGPEHY 618
Query: 372 -CLISMYAKCGVIDNAYNIFSNM-VSRDLVSWNSMVMGFSHHGLANETLKVFESMLE-SG 428
CL+ + + G ++ A + M + V W + + HG E + E +
Sbjct: 619 ACLVDLLGRAGRLNAALRLIEEMPMEPPPVVWVAFLSCCRIHGKVELGEYAAEKITELAS 678
Query: 429 THPNSVTFLGILSA 442
H S T L L A
Sbjct: 679 NHDGSYTLLSNLYA 692
>sp|Q9SKQ4|PP167_ARATH Pentatricopeptide repeat-containing protein At2g21090
OS=Arabidopsis thaliana GN=PCMP-E48 PE=2 SV=1
Length = 597
Score = 295 bits (755), Expect = 7e-79, Method: Compositional matrix adjust.
Identities = 166/489 (33%), Positives = 267/489 (54%), Gaps = 3/489 (0%)
Query: 103 NVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEME 162
N + N ++ ++ G+ +A KVF+ M ++N+ SWN M++GYV+ M+ A V+F+ M
Sbjct: 81 NTLLSNHLIGMYMKCGKPIDACKVFDQMHLRNLYSWNNMVSGYVKSGMLVRARVVFDSMP 140
Query: 163 ERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIE 222
ER+VV+W +M+ GY + G + E ++ R + G L L +
Sbjct: 141 ERDVVSWNTMVIGYAQDGNLHEALWFYKEFRRSGIKFNEFSFAGLLTACVKSRQLQLNRQ 200
Query: 223 MKG-ICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQ 281
G + G NV S+I+ Y + G++E A+ FD + V+D WT++I GY +G
Sbjct: 201 AHGQVLVAGFLSNVVLSCSIIDAYAKCGQMESAKRCFDEMTVKDIHIWTTLISGYAKLGD 260
Query: 282 VSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGA 341
+ A LF MP+++ V+WTA+I+G V+ A LF +M A GV P TFS A
Sbjct: 261 MEAAEKLFCEMPEKNPVSWTALIAGYVRQGSGNRALDLFRKMIALGVKPEQFTFSSCLCA 320
Query: 342 AGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSR-DLVS 400
+ + A++ G++IH +++T + I+ + LI MY+K G ++ + +F + D V
Sbjct: 321 SASIASLRHGKEIHGYMIRTNVRPNAIVISSLIDMYSKSGSLEASERVFRICDDKHDCVF 380
Query: 401 WNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMF 460
WN+M+ + HGL ++ L++ + M++ PN T + IL+ACSH+GLV G F +M
Sbjct: 381 WNTMISALAQHGLGHKALRMLDDMIKFRVQPNRTTLVVILNACSHSGLVEEGLRWFESMT 440
Query: 461 DVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEI 520
+ I P EHY +I+LLGRAG KE + +PFEPD IW A+LG C GN E+
Sbjct: 441 VQHGIVPDQEHYACLIDLLGRAGCFKELMRKIEEMPFEPDKHIWNAILGVCRI-HGNEEL 499
Query: 521 AEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNG 580
+ AA L++LDP ++ +++L +IYA G+ KLR M + V K SW+
Sbjct: 500 GKKAADELIKLDPESSAPYILLSSIYADHGKWELVEKLRGVMKKRRVNKEKAVSWIEIEK 559
Query: 581 GIQMFLSGD 589
++ F D
Sbjct: 560 KVEAFTVSD 568
Score = 152 bits (385), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 122/415 (29%), Positives = 191/415 (46%), Gaps = 18/415 (4%)
Query: 18 ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWT 77
I Y K G +A +F M RN+ S+N M+SG++++G L AR +F+ MPER+VVSW
Sbjct: 89 IGMYMKCGKPIDACKVFDQMHLRNLYSWNNMVSGYVKSGMLVRARVVFDSMPERDVVSWN 148
Query: 78 AMICGLADAGRVCEARKLFEEMPER----NVVSWNSMVVGLIRNGELNEARKVFNSMPI- 132
M+ G A G + EA ++E N S+ ++ +++ +L R+ + +
Sbjct: 149 TMVIGYAQDGNLHEALWFYKEFRRSGIKFNEFSFAGLLTACVKSRQLQLNRQAHGQVLVA 208
Query: 133 ---KNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLF 189
NV+ ++I Y +C M A F+EM +++ WT++ISGY + G++E LF
Sbjct: 209 GFLSNVVLSCSIIDAYAKCGQMESAKRCFDEMTVKDIHIWTTLISGYAKLGDMEAAEKLF 268
Query: 190 RRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQS--CNSMINGYIR 247
MP KN VSWTA+I G+ G +L LF +M + S C S +R
Sbjct: 269 CEMPEKNPVSWTALIAGYVRQGSGNRALDLFRKMIALGVKPEQFTFSSCLCASASIASLR 328
Query: 248 FGRLEEAQNLFDTVPVR-DEISWTSMIDGYLSVGQVSNAYYLFHNMPDR-DAVAWTAMIS 305
G+ E VR + I +S+ID Y G + + +F D+ D V W MIS
Sbjct: 329 HGK--EIHGYMIRTNVRPNAIVISSLIDMYSKSGSLEASERVFRICDDKHDCVFWNTMIS 386
Query: 306 GLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLG-RQIHCVLMKTESE 364
L Q+ L +A + +M V P T V+ A + ++ G R + ++
Sbjct: 387 ALAQHGLGHKALRMLDDMIKFRVQPNRTTLVVILNACSHSGLVEEGLRWFESMTVQHGIV 446
Query: 365 SDLILENCLISMYAKCGVIDNAYNIFSNM-VSRDLVSWNSMVMGFSHHGLANETL 418
D CLI + + G M D WN+++ HG NE L
Sbjct: 447 PDQEHYACLIDLLGRAGCFKELMRKIEEMPFEPDKHIWNAILGVCRIHG--NEEL 499
Score = 74.7 bits (182), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 75/309 (24%), Positives = 126/309 (40%), Gaps = 45/309 (14%)
Query: 9 SLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEM 68
S VV S I Y+K G ++ AK F M +++ + ++SG+ + G + A +LF EM
Sbjct: 212 SNVVLSCSIIDAYAKCGQMESAKRCFDEMTVKDIHIWTTLISGYAKLGDMEAAEKLFCEM 271
Query: 69 PERNVVSWTAMICGLADAGRVCEARKLFEEM------PERNVVSWNSMVVGLIRNGELNE 122
PE+N VSWTA+I G G A LF +M PE+ +++S + L
Sbjct: 272 PEKNPVSWTALIAGYVRQGSGNRALDLFRKMIALGVKPEQ--FTFSSCLCASASIASLRH 329
Query: 123 ARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEV 182
+++ M NV N + +S+I Y ++G +
Sbjct: 330 GKEIHGYMIRTNV---------------------------RPNAIVISSLIDMYSKSGSL 362
Query: 183 EEGYCLFRRMPRK-NVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSM 241
E +FR K + V W MI A +G ++L + +M N + +
Sbjct: 363 EASERVFRICDDKHDCVFWNTMISALAQHGLGHKALRMLDDMIKFRVQPNRTTLV---VI 419
Query: 242 INGYIRFGRLEEAQNLFDTVPVR-----DEISWTSMIDGYLSVGQVSNAYYLFHNMP-DR 295
+N G +EE F+++ V+ D+ + +ID G MP +
Sbjct: 420 LNACSHSGLVEEGLRWFESMTVQHGIVPDQEHYACLIDLLGRAGCFKELMRKIEEMPFEP 479
Query: 296 DAVAWTAMI 304
D W A++
Sbjct: 480 DKHIWNAIL 488
>sp|Q9FLZ9|PP405_ARATH Pentatricopeptide repeat-containing protein At5g39350
OS=Arabidopsis thaliana GN=PCMP-E16 PE=2 SV=1
Length = 677
Score = 295 bits (754), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 200/621 (32%), Positives = 316/621 (50%), Gaps = 64/621 (10%)
Query: 13 HLTSSIT-KYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEM--- 68
H+ S+++ Y+ G I A+ LF+ MPQ +++SYN ++ +++ G +A +F M
Sbjct: 50 HILSTLSVTYALCGHITYARKLFEEMPQSSLLSYNIVIRMYVREGLYHDAISVFIRMVSE 109
Query: 69 -----PE-------------------------RNVVSW--------TAMICGLADAGRVC 90
P+ R + SW A++ + G+V
Sbjct: 110 GVKCVPDGYTYPFVAKAAGELKSMKLGLVVHGRILRSWFGRDKYVQNALLAMYMNFGKVE 169
Query: 91 EARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECC- 149
AR +F+ M R+V+SWN+M+ G RNG +N+A +F+ M ++V +A I + C
Sbjct: 170 MARDVFDVMKNRDVISWNTMISGYYRNGYMNDALMMFDWMVNESVDLDHATIVSMLPVCG 229
Query: 150 -----MMGEAIVLFEEMEER---NVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWT 201
MG + E E+R + ++++ Y + G ++E +F RM R++V++WT
Sbjct: 230 HLKDLEMGRNVHKLVE-EKRLGDKIEVKNALVNMYLKCGRMDEARFVFDRMERRDVITWT 288
Query: 202 AMIGGFAWNGFHKESLLL--FIEMKGICDNGNNCNVQSCNSMINGYIRF--GRLEEAQNL 257
MI G+ +G + +L L ++ +G+ N + S S+ ++ G+ +
Sbjct: 289 CMINGYTEDGDVENALELCRLMQFEGV--RPNAVTIASLVSVCGDALKVNDGKCLHGWAV 346
Query: 258 FDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEAT 317
V D I TS+I Y +V + +F W+A+I+G VQNEL +A
Sbjct: 347 RQQV-YSDIIIETSLISMYAKCKRVDLCFRVFSGASKYHTGPWSAIIAGCVQNELVSDAL 405
Query: 318 YLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMY 377
LF MR V P AT + L A A A++ IHC L KT S L L+ +Y
Sbjct: 406 GLFKRMRREDVEPNIATLNSLLPAYAALADLRQAMNIHCYLTKTGFMSSLDAATGLVHVY 465
Query: 378 AKCGVIDNAYNIFSNM----VSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNS 433
+KCG +++A+ IF+ + S+D+V W +++ G+ HG + L+VF M+ SG PN
Sbjct: 466 SKCGTLESAHKIFNGIQEKHKSKDVVLWGALISGYGMHGDGHNALQVFMEMVRSGVTPNE 525
Query: 434 VTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVL 493
+TF L+ACSH+GLV G LF M + YK HY +++LLGRAG++ EA +
Sbjct: 526 ITFTSALNACSHSGLVEEGLTLFRFMLEHYKTLARSNHYTCIVDLLGRAGRLDEAYNLIT 585
Query: 494 RLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHV 553
+PFEP +WGALL AC E N ++ E AA +L EL+P N +V+L NIYAA GR
Sbjct: 586 TIPFEPTSTVWGALLAACVTHE-NVQLGEMAANKLFELEPENTGNYVLLANIYAALGRWK 644
Query: 554 EEHKLRMDMGLKGVRKVPGCS 574
+ K+R M G+RK PG S
Sbjct: 645 DMEKVRSMMENVGLRKKPGHS 665
Score = 144 bits (362), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 128/525 (24%), Positives = 228/525 (43%), Gaps = 90/525 (17%)
Query: 41 NVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVS---WTAMICGLADAGRVCEARKLFE 97
+V Y ++L+ F +S+ + L + VS + + A G + ARKLFE
Sbjct: 14 SVKQYQSLLNHFAATQSISKTKALHCHVITGGRVSGHILSTLSVTYALCGHITYARKLFE 73
Query: 98 EMPERNVVSWNSMVVGLIRNGELNEARKVFNSM--------PIKNVISWNAMIAGYVECC 149
EMP+ +++S+N ++ +R G ++A VF M P + A AG ++
Sbjct: 74 EMPQSSLLSYNIVIRMYVREGLYHDAISVFIRMVSEGVKCVPDGYTYPFVAKAAGELKSM 133
Query: 150 MMGEAI--VLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGF 207
+G + + R+ ++++ Y G+VE +F M ++V+SW MI G+
Sbjct: 134 KLGLVVHGRILRSWFGRDKYVQNALLAMYMNFGKVEMARDVFDVMKNRDVISWNTMISGY 193
Query: 208 AWNGFHKESLLLF---------------IEMKGICDN------GNNCN-----------V 235
NG+ ++L++F + M +C + G N + +
Sbjct: 194 YRNGYMNDALMMFDWMVNESVDLDHATIVSMLPVCGHLKDLEMGRNVHKLVEEKRLGDKI 253
Query: 236 QSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDR 295
+ N+++N Y++ GR++EA+ +FD + RD I+WT MI+GY G V NA L
Sbjct: 254 EVKNALVNMYLKCGRMDEARFVFDRMERRDVITWTCMINGYTEDGDVENALELCR----- 308
Query: 296 DAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIH 355
L+Q E GV P T + L G ++ G+ +H
Sbjct: 309 -----------LMQFE---------------GVRPNAVTIASLVSVCGDALKVNDGKCLH 342
Query: 356 CVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLAN 415
++ + SD+I+E LISMYAKC +D + +FS W++++ G + L +
Sbjct: 343 GWAVRQQVYSDIIIETSLISMYAKCKRVDLCFRVFSGASKYHTGPWSAIIAGCVQNELVS 402
Query: 416 ETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAM-FDVYKIQPG----PE 470
+ L +F+ M PN T +L A +A L +L AM Y + G +
Sbjct: 403 DALGLFKRMRREDVEPNIATLNSLLPA--YAALA----DLRQAMNIHCYLTKTGFMSSLD 456
Query: 471 HYVSMINLLGRAGKIKEAEEF---VLRLPFEPDHRIWGALLGACG 512
++++ + G ++ A + + D +WGAL+ G
Sbjct: 457 AATGLVHVYSKCGTLESAHKIFNGIQEKHKSKDVVLWGALISGYG 501
Score = 63.9 bits (154), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 71/278 (25%), Positives = 123/278 (44%), Gaps = 55/278 (19%)
Query: 4 RNHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARR 63
R S ++ TS I+ Y+K +D +F + + ++A+++G +QN +S+A
Sbjct: 347 RQQVYSDIIIETSLISMYAKCKRVDLCFRVFSGASKYHTGPWSAIIAGCVQNELVSDALG 406
Query: 64 LFEEMP----ERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLI---- 115
LF+ M E N+ + +++ A + +A + + + +S GL+
Sbjct: 407 LFKRMRREDVEPNIATLNSLLPAYAALADLRQAMNIHCYLTKTGFMSSLDAATGLVHVYS 466
Query: 116 RNGELNEARKVFNSM----PIKNVISWNAMIAGYVECCMMGE---AIVLFEEMEERNV-- 166
+ G L A K+FN + K+V+ W A+I+GY M G+ A+ +F EM V
Sbjct: 467 KCGTLESAHKIFNGIQEKHKSKDVVLWGALISGY---GMHGDGHNALQVFMEMVRSGVTP 523
Query: 167 --VTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMK 224
+T+TS ++ +G VEEG LFR M H ++L
Sbjct: 524 NEITFTSALNACSHSGLVEEGLTLFRFMLE------------------HYKTLA------ 559
Query: 225 GICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVP 262
N +C +++ R GRL+EA NL T+P
Sbjct: 560 -------RSNHYTC--IVDLLGRAGRLDEAYNLITTIP 588
>sp|Q9CAA8|PP108_ARATH Putative pentatricopeptide repeat-containing protein At1g68930
OS=Arabidopsis thaliana GN=PCMP-H22 PE=3 SV=1
Length = 743
Score = 294 bits (753), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 182/610 (29%), Positives = 300/610 (49%), Gaps = 49/610 (8%)
Query: 33 LFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEA 92
+ + +P YN ++ + + ARR+F+ +P+ N+ SW ++ + AG + E
Sbjct: 32 IIRALPYPETFLYNNIVHAYALMKSSTYARRVFDRIPQPNLFSWNNLLLAYSKAGLISEM 91
Query: 93 RKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSM--------------------PI 132
FE++P+R+ V+WN ++ G +G + A K +N+M
Sbjct: 92 ESTFEKLPDRDGVTWNVLIEGYSLSGLVGAAVKAYNTMMRDFSANLTRVTLMTMLKLSSS 151
Query: 133 KNVISWNAMIAG--------------------YVECCMMGEAIVLFEEMEERNVVTWTSM 172
+S I G Y + +A +F +++RN V + S+
Sbjct: 152 NGHVSLGKQIHGQVIKLGFESYLLVGSPLLYMYANVGCISDAKKVFYGLDDRNTVMYNSL 211
Query: 173 ISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNN 232
+ G G +E+ LFR M K+ VSW AMI G A NG KE++ F EMK G
Sbjct: 212 MGGLLACGMIEDALQLFRGM-EKDSVSWAAMIKGLAQNGLAKEAIECFREMK---VQGLK 267
Query: 233 CNVQSCNSMINGYIRFGRLEEAQNLFDTV---PVRDEIS-WTSMIDGYLSVGQVSNAYYL 288
+ S++ G + E + + + +D I +++ID Y + A +
Sbjct: 268 MDQYPFGSVLPACGGLGAINEGKQIHACIIRTNFQDHIYVGSALIDMYCKCKCLHYAKTV 327
Query: 289 FHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANI 348
F M ++ V+WTAM+ G Q EA +F++M+ G+ P + T A +++
Sbjct: 328 FDRMKQKNVVSWTAMVVGYGQTGRAEEAVKIFLDMQRSGIDPDHYTLGQAISACANVSSL 387
Query: 349 DLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGF 408
+ G Q H + + + + N L+++Y KCG ID++ +F+ M RD VSW +MV +
Sbjct: 388 EEGSQFHGKAITSGLIHYVTVSNSLVTLYGKCGDIDDSTRLFNEMNVRDAVSWTAMVSAY 447
Query: 409 SHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPG 468
+ G A ET+++F+ M++ G P+ VT G++SACS AGLV +G F M Y I P
Sbjct: 448 AQFGRAVETIQLFDKMVQHGLKPDGVTLTGVISACSRAGLVEKGQRYFKLMTSEYGIVPS 507
Query: 469 PEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRL 528
HY MI+L R+G+++EA F+ +PF PD W LL AC +GN EI + AA+ L
Sbjct: 508 IGHYSCMIDLFSRSGRLEEAMRFINGMPFPPDAIGWTTLLSACR-NKGNLEIGKWAAESL 566
Query: 529 LELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSG 588
+ELDP + + +L +IYA+ G+ +LR M K V+K PG SW+ G + F +
Sbjct: 567 IELDPHHPAGYTLLSSIYASKGKWDSVAQLRRGMREKNVKKEPGQSWIKWKGKLHSFSAD 626
Query: 589 DKIPAQVAEI 598
D+ + +I
Sbjct: 627 DESSPYLDQI 636
Score = 140 bits (352), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 118/509 (23%), Positives = 216/509 (42%), Gaps = 92/509 (18%)
Query: 21 YSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMP----------- 69
YSK G I E ++ F+ +P R+ V++N ++ G+ +G + A + + M
Sbjct: 82 YSKAGLISEMESTFEKLPDRDGVTWNVLIEGYSLSGLVGAAVKAYNTMMRDFSANLTRVT 141
Query: 70 -----------------------------ERNVVSWTAMICGLADAGRVCEARKLFEEMP 100
E ++ + ++ A+ G + +A+K+F +
Sbjct: 142 LMTMLKLSSSNGHVSLGKQIHGQVIKLGFESYLLVGSPLLYMYANVGCISDAKKVFYGLD 201
Query: 101 ERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEE 160
+RN V +NS++ GL+ G + +A ++F M K+ +SW AMI G + + EAI F E
Sbjct: 202 DRNTVMYNSLMGGLLACGMIEDALQLFRGME-KDSVSWAAMIKGLAQNGLAKEAIECFRE 260
Query: 161 ME---------------------------------------ERNVVTWTSMISGYCRAGE 181
M+ + ++ +++I YC+
Sbjct: 261 MKVQGLKMDQYPFGSVLPACGGLGAINEGKQIHACIIRTNFQDHIYVGSALIDMYCKCKC 320
Query: 182 VEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSM 241
+ +F RM +KNVVSWTAM+ G+ G +E++ +F++M+ +G + + +
Sbjct: 321 LHYAKTVFDRMKQKNVVSWTAMVVGYGQTGRAEEAVKIFLDMQ---RSGIDPDHYTLGQA 377
Query: 242 INGYIRFGRLEEAQNLFDTVPVRDEISWT----SMIDGYLSVGQVSNAYYLFHNMPDRDA 297
I+ LEE I + S++ Y G + ++ LF+ M RDA
Sbjct: 378 ISACANVSSLEEGSQFHGKAITSGLIHYVTVSNSLVTLYGKCGDIDDSTRLFNEMNVRDA 437
Query: 298 VAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCV 357
V+WTAM+S Q VE LF +M HG+ P T + + A ++ G Q +
Sbjct: 438 VSWTAMVSAYAQFGRAVETIQLFDKMVQHGLKPDGVTLTGVISACSRAGLVEKG-QRYFK 496
Query: 358 LMKTESE--SDLILENCLISMYAKCGVIDNAYNIFSNM-VSRDLVSWNSMVMGFSHHGLA 414
LM +E + +C+I ++++ G ++ A + M D + W +++ + G
Sbjct: 497 LMTSEYGIVPSIGHYSCMIDLFSRSGRLEEAMRFINGMPFPPDAIGWTTLLSACRNKGNL 556
Query: 415 NETLKVFESMLE-SGTHPNSVTFLGILSA 442
ES++E HP T L + A
Sbjct: 557 EIGKWAAESLIELDPHHPAGYTLLSSIYA 585
Score = 94.4 bits (233), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 76/282 (26%), Positives = 129/282 (45%), Gaps = 51/282 (18%)
Query: 18 ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNV---- 73
I Y K + AK +F M Q+NVVS+ AM+ G+ Q GR EA ++F +M +
Sbjct: 312 IDMYCKCKCLHYAKTVFDRMKQKNVVSWTAMVVGYGQTGRAEEAVKIFLDMQRSGIDPDH 371
Query: 74 VSWTAMICGLADAGRVCEARKLFEEMPERNVVSW----NSMVVGLIRNGELNEARKVFNS 129
+ I A+ + E + + ++ + NS+V + G+++++ ++FN
Sbjct: 372 YTLGQAISACANVSSLEEGSQFHGKAITSGLIHYVTVSNSLVTLYGKCGDIDDSTRLFNE 431
Query: 130 MPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNV----VTWTSMISGYCRAGEVEEG 185
M +++ +SW AM++ Y + E I LF++M + + VT T +IS RAG VE+G
Sbjct: 432 MNVRDAVSWTAMVSAYAQFGRAVETIQLFDKMVQHGLKPDGVTLTGVISACSRAGLVEKG 491
Query: 186 YCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGY 245
F+ M + + IG + SC MI+ +
Sbjct: 492 QRYFKLMTSEYGI--VPSIGHY-----------------------------SC--MIDLF 518
Query: 246 IRFGRLEEAQNLFDTVPV-RDEISWTSMID-----GYLSVGQ 281
R GRLEEA + +P D I WT+++ G L +G+
Sbjct: 519 SRSGRLEEAMRFINGMPFPPDAIGWTTLLSACRNKGNLEIGK 560
Score = 68.2 bits (165), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 56/198 (28%), Positives = 97/198 (48%), Gaps = 19/198 (9%)
Query: 16 SSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNV-- 73
S +T Y K G ID++ LF M R+ VS+ AM+S + Q GR E +LF++M + +
Sbjct: 411 SLVTLYGKCGDIDDSTRLFNEMNVRDAVSWTAMVSAYAQFGRAVETIQLFDKMVQHGLKP 470
Query: 74 --VSWTAMICGLADAGRVCEARKLFEEMPER-----NVVSWNSMVVGLIRNGELNEARKV 126
V+ T +I + AG V + ++ F+ M ++ ++ M+ R+G L EA +
Sbjct: 471 DGVTLTGVISACSRAGLVEKGQRYFKLMTSEYGIVPSIGHYSCMIDLFSRSGRLEEAMRF 530
Query: 127 FNSMPI-KNVISWNAMIA-----GYVECCM-MGEAIVLFEEMEERNVVTWTSMISGYCRA 179
N MP + I W +++ G +E E+++ E++ + +T + S Y
Sbjct: 531 INGMPFPPDAIGWTTLLSACRNKGNLEIGKWAAESLI---ELDPHHPAGYTLLSSIYASK 587
Query: 180 GEVEEGYCLFRRMPRKNV 197
G+ + L R M KNV
Sbjct: 588 GKWDSVAQLRRGMREKNV 605
Score = 43.9 bits (102), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 42/188 (22%), Positives = 77/188 (40%), Gaps = 11/188 (5%)
Query: 352 RQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHH 411
+ IH +++ + L N ++ YA A +F + +L SWN++++ +S
Sbjct: 26 KMIHGNIIRALPYPETFLYNNIVHAYALMKSSTYARRVFDRIPQPNLFSWNNLLLAYSKA 85
Query: 412 GLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEH 471
GL +E FE + + + VT+ ++ S +GLV + +N M +
Sbjct: 86 GLISEMESTFEKLPDR----DGVTWNVLIEGYSLSGLVGAAVKAYNTMMRDFSANLTRVT 141
Query: 472 YVSMINLLGRAGKI---KEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRL 528
++M+ L G + K+ V++L FE + LL + N A K
Sbjct: 142 LMTMLKLSSSNGHVSLGKQIHGQVIKLGFESYLLVGSPLL----YMYANVGCISDAKKVF 197
Query: 529 LELDPLNA 536
LD N
Sbjct: 198 YGLDDRNT 205
>sp|Q9STS9|PP268_ARATH Putative pentatricopeptide repeat-containing protein At3g47840
OS=Arabidopsis thaliana GN=PCMP-E43 PE=3 SV=1
Length = 706
Score = 292 bits (748), Expect = 5e-78, Method: Compositional matrix adjust.
Identities = 193/637 (30%), Positives = 308/637 (48%), Gaps = 88/637 (13%)
Query: 46 NAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEM------ 99
N+ L + G L AR++F++MP ++VSWT++I A EA LF M
Sbjct: 44 NSHLRSLINAGNLRAARQVFDKMPHGDIVSWTSIIKRYVTANNSDEALILFSAMRVVDHA 103
Query: 100 --PERNVVS---------------------------WNSMVVG------LIRNGELNEAR 124
P+ +V+S +S+ VG R G+++++
Sbjct: 104 VSPDTSVLSVVLKACGQSSNIAYGESLHAYAVKTSLLSSVYVGSSLLDMYKRVGKIDKSC 163
Query: 125 KVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEE--------------------- 163
+VF+ MP +N ++W A+I G V E + F EM
Sbjct: 164 RVFSEMPFRNAVTWTAIITGLVHAGRYKEGLTYFSEMSRSEELSDTYTFAIALKACAGLR 223
Query: 164 --------------RNVVTW----TSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIG 205
R VT S+ + Y GE+++G CLF M ++VVSWT++I
Sbjct: 224 QVKYGKAIHTHVIVRGFVTTLCVANSLATMYTECGEMQDGLCLFENMSERDVVSWTSLIV 283
Query: 206 GFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTV---P 262
+ G +++ FI+M+ ++ N Q+ SM + RL + L V
Sbjct: 284 AYKRIGQEVKAVETFIKMR---NSQVPPNEQTFASMFSACASLSRLVWGEQLHCNVLSLG 340
Query: 263 VRDEISWT-SMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFM 321
+ D +S + SM+ Y + G + +A LF M RD ++W+ +I G Q E F
Sbjct: 341 LNDSLSVSNSMMKMYSTCGNLVSASVLFQGMRCRDIISWSTIIGGYCQAGFGEEGFKYFS 400
Query: 322 EMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCG 381
MR G P + + L +G A I+ GRQ+H + + E + + + LI+MY+KCG
Sbjct: 401 WMRQSGTKPTDFALASLLSVSGNMAVIEGGRQVHALALCFGLEQNSTVRSSLINMYSKCG 460
Query: 382 VIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILS 441
I A IF D+VS +M+ G++ HG + E + +FE L+ G P+SVTF+ +L+
Sbjct: 461 SIKEASMIFGETDRDDIVSLTAMINGYAEHGKSKEAIDLFEKSLKVGFRPDSVTFISVLT 520
Query: 442 ACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDH 501
AC+H+G + G+ FN M + Y ++P EHY M++LL RAG++ +AE+ + + ++ D
Sbjct: 521 ACTHSGQLDLGFHYFNMMQETYNMRPAKEHYGCMVDLLCRAGRLSDAEKMINEMSWKKDD 580
Query: 502 RIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMD 561
+W LL AC +G+ E AA+R+LELDP A A V L NIY+++G E +R +
Sbjct: 581 VVWTTLLIACK-AKGDIERGRRAAERILELDPTCATALVTLANIYSSTGNLEEAANVRKN 639
Query: 562 MGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
M KGV K PG S + + F+SGD+ Q +I
Sbjct: 640 MKAKGVIKEPGWSSIKIKDCVSAFVSGDRFHPQSEDI 676
>sp|Q9FIB2|PP373_ARATH Putative pentatricopeptide repeat-containing protein At5g09950
OS=Arabidopsis thaliana GN=PCMP-H35 PE=3 SV=1
Length = 995
Score = 291 bits (744), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 193/636 (30%), Positives = 323/636 (50%), Gaps = 69/636 (10%)
Query: 18 ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEM-------PE 70
++ ++K G + A+ +F M RN V+ N ++ G ++ EA +LF +M PE
Sbjct: 250 VSAFAKSGSLSYARKVFNQMETRNAVTLNGLMVGLVRQKWGEEATKLFMDMNSMIDVSPE 309
Query: 71 RNVVSWTA----------------------MICGLAD---------------AGRVCEAR 93
V+ ++ + GL D G + +AR
Sbjct: 310 SYVILLSSFPEYSLAEEVGLKKGREVHGHVITTGLVDFMVGIGNGLVNMYAKCGSIADAR 369
Query: 94 KLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECC---- 149
++F M +++ VSWNSM+ GL +NG EA + + SM +++ + + + C
Sbjct: 370 RVFYFMTDKDSVSWNSMITGLDQNGCFIEAVERYKSMRRHDILPGSFTLISSLSSCASLK 429
Query: 150 -------MMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTA 202
+ GE++ L ++ NV ++++ Y G + E +F MP + VSW +
Sbjct: 430 WAKLGQQIHGESLKLGIDL---NVSVSNALMTLYAETGYLNECRKIFSSMPEHDQVSWNS 486
Query: 203 MIGGFAWNGFH-KESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRL-EEAQNLFDT 260
+IG A + E+++ F+ + N S + FG L ++ L
Sbjct: 487 IIGALARSERSLPEAVVCFLNAQRAGQKLNRITFSS-VLSAVSSLSFGELGKQIHGLALK 545
Query: 261 VPVRDE-ISWTSMIDGYLSVGQVSNAYYLFHNMPDR-DAVAWTAMISGLVQNELFVEATY 318
+ DE + ++I Y G++ +F M +R D V W +MISG + NEL +A
Sbjct: 546 NNIADEATTENALIACYGKCGEMDGCEKIFSRMAERRDNVTWNSMISGYIHNELLAKALD 605
Query: 319 LFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYA 378
L M G + ++ + A + A ++ G ++H ++ ESD+++ + L+ MY+
Sbjct: 606 LVWFMLQTGQRLDSFMYATVLSAFASVATLERGMEVHACSVRACLESDVVVGSALVDMYS 665
Query: 379 KCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESM-LESGTHPNSVTFL 437
KCG +D A F+ M R+ SWNSM+ G++ HG E LK+FE+M L+ T P+ VTF+
Sbjct: 666 KCGRLDYALRFFNTMPVRNSYSWNSMISGYARHGQGEEALKLFETMKLDGQTPPDHVTFV 725
Query: 438 GILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPF 497
G+LSACSHAGL+ G++ F +M D Y + P EH+ M ++LGRAG++ + E+F+ ++P
Sbjct: 726 GVLSACSHAGLLEEGFKHFESMSDSYGLAPRIEHFSCMADVLGRAGELDKLEDFIEKMPM 785
Query: 498 EPDHRIWGALLGACGFCEGN---AEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVE 554
+P+ IW +LGAC C N AE+ + AA+ L +L+P NA +V+L N+YAA GR +
Sbjct: 786 KPNVLIWRTVLGAC--CRANGRKAELGKKAAEMLFQLEPENAVNYVLLGNMYAAGGRWED 843
Query: 555 EHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDK 590
K R M V+K G SW+ G+ MF++GDK
Sbjct: 844 LVKARKKMKDADVKKEAGYSWVTMKDGVHMFVAGDK 879
Score = 145 bits (365), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 136/534 (25%), Positives = 234/534 (43%), Gaps = 81/534 (15%)
Query: 46 NAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVV 105
+ ++S F ++G LS AR++F +M RN V+ ++ GL EA KLF +M V
Sbjct: 247 SGLVSAFAKSGSLSYARKVFNQMETRNAVTLNGLMVGLVRQKWGEEATKLFMDMNSMIDV 306
Query: 106 SWNSMVVGLIRNGE--------LNEARKVFNSMPIKNVISW-----NAMIAGYVECCMMG 152
S S V+ L E L + R+V + ++ + N ++ Y +C +
Sbjct: 307 SPESYVILLSSFPEYSLAEEVGLKKGREVHGHVITTGLVDFMVGIGNGLVNMYAKCGSIA 366
Query: 153 EAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNV-------VSWTAMIG 205
+A +F M +++ V+W SMI+G + G E ++ M R ++ +S +
Sbjct: 367 DARRVFYFMTDKDSVSWNSMITGLDQNGCFIEAVERYKSMRRHDILPGSFTLISSLSSCA 426
Query: 206 GFAW----NGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTV 261
W H ESL L I++ NV N+++ Y G L E + +F ++
Sbjct: 427 SLKWAKLGQQIHGESLKLGIDL----------NVSVSNALMTLYAETGYLNECRKIFSSM 476
Query: 262 PVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFM 321
P D++SW S+I G L+ + S +P EA F+
Sbjct: 477 PEHDQVSWNSII-GALARSERS--------LP---------------------EAVVCFL 506
Query: 322 EMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCG 381
+ G TFS + A + + +LG+QIH + +K + EN LI+ Y KCG
Sbjct: 507 NAQRAGQKLNRITFSSVLSAVSSLSFGELGKQIHGLALKNNIADEATTENALIACYGKCG 566
Query: 382 VIDNAYNIFSNMVS-RDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGIL 440
+D IFS M RD V+WNSM+ G+ H+ L + L + ML++G +S + +L
Sbjct: 567 EMDGCEKIFSRMAERRDNVTWNSMISGYIHNELLAKALDLVWFMLQTGQRLDSFMYATVL 626
Query: 441 SACSHAGLVSRGWELFNAMFDVYKIQPGPEHYV----SMINLLGRAGKIKEAEEFVLRLP 496
SA + + RG E+ ++ E V +++++ + G++ A F +P
Sbjct: 627 SAFASVATLERGMEVHAC-----SVRACLESDVVVGSALVDMYSKCGRLDYALRFFNTMP 681
Query: 497 FEPDHRIWGALLGACGFCEGNAEIAEHAAK--RLLELDPLNAPAHVVLCNIYAA 548
+ W +++ G+ E A K ++LD P HV + +A
Sbjct: 682 VRNSYS-WNSMIS--GYARHGQ--GEEALKLFETMKLDGQTPPDHVTFVGVLSA 730
Score = 142 bits (358), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 124/475 (26%), Positives = 210/475 (44%), Gaps = 37/475 (7%)
Query: 63 RLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNE 122
RL++ +++V +I + G ARK+F+EMP RN VSW +V G RNGE E
Sbjct: 26 RLYKNRLDKDVYLCNNLINAYLETGDSVSARKVFDEMPLRNCVSWACIVSGYSRNGEHKE 85
Query: 123 ARKVFNSMPIKNVISWNAMIAGYVECC--------MMGEAI--VLFEEMEERNVVTWTSM 172
A M + + S + C + G I ++F+ + V +
Sbjct: 86 ALVFLRDMVKEGIFSNQYAFVSVLRACQEIGSVGILFGRQIHGLMFKLSYAVDAVVSNVL 145
Query: 173 ISGYCRA-GEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGN 231
IS Y + G V C F + KN VSW ++I ++ G + + +F M+
Sbjct: 146 ISMYWKCIGSVGYALCAFGDIEVKNSVSWNSIISVYSQAGDQRSAFRIFSSMQYDGSRPT 205
Query: 232 NCN----VQSCNSMINGYIRFGRLEEAQ-NLFDTVPVRDEISWTSMIDGYLSVGQVSNAY 286
V + S+ +R LE+ + + + D + ++ + G +S A
Sbjct: 206 EYTFGSLVTTACSLTEPDVRL--LEQIMCTIQKSGLLTDLFVGSGLVSAFAKSGSLSYAR 263
Query: 287 YLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAH-GVPPLNATFSVLFG----- 340
+F+ M R+AV ++ GLV+ + EAT LFM+M + V P ++ +L
Sbjct: 264 KVFNQMETRNAVTLNGLMVGLVRQKWGEEATKLFMDMNSMIDVSP--ESYVILLSSFPEY 321
Query: 341 AAGATANIDLGRQIHCVLMKTESESDLI-LENCLISMYAKCGVIDNAYNIFSNMVSRDLV 399
+ + GR++H ++ T ++ + N L++MYAKCG I +A +F M +D V
Sbjct: 322 SLAEEVGLKKGREVHGHVITTGLVDFMVGIGNGLVNMYAKCGSIADARRVFYFMTDKDSV 381
Query: 400 SWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAM 459
SWNSM+ G +G E ++ ++SM P S T + LS+C+ S W
Sbjct: 382 SWNSMITGLDQNGCFIEAVERYKSMRRHDILPGSFTLISSLSSCA-----SLKWAKLGQQ 436
Query: 460 FDVYKIQPGPEHYVSMIN----LLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGA 510
++ G + VS+ N L G + E + +P E D W +++GA
Sbjct: 437 IHGESLKLGIDLNVSVSNALMTLYAETGYLNECRKIFSSMP-EHDQVSWNSIIGA 490
Score = 129 bits (325), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 129/557 (23%), Positives = 242/557 (43%), Gaps = 74/557 (13%)
Query: 18 ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVS-- 75
I Y + G A+ +F MP RN VS+ ++SG+ +NG EA +M + + S
Sbjct: 43 INAYLETGDSVSARKVFDEMPLRNCVSWACIVSGYSRNGEHKEALVFLRDMVKEGIFSNQ 102
Query: 76 -------------------WTAMICGL-------ADA--------------GRVCEARKL 95
+ I GL DA G V A
Sbjct: 103 YAFVSVLRACQEIGSVGILFGRQIHGLMFKLSYAVDAVVSNVLISMYWKCIGSVGYALCA 162
Query: 96 FEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVE--CCMMGE 153
F ++ +N VSWNS++ + G+ A ++F+SM V C +
Sbjct: 163 FGDIEVKNSVSWNSIISVYSQAGDQRSAFRIFSSMQYDGSRPTEYTFGSLVTTACSLTEP 222
Query: 154 AIVLFEEM----EERNVVT----WTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIG 205
+ L E++ ++ ++T + ++S + ++G + +F +M +N V+ ++
Sbjct: 223 DVRLLEQIMCTIQKSGLLTDLFVGSGLVSAFAKSGSLSYARKVFNQMETRNAVTLNGLMV 282
Query: 206 GFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRD 265
G + +E+ LF++M + D + +S +++ + + EE L V
Sbjct: 283 GLVRQKWGEEATKLFMDMNSMID----VSPESYVILLSSFPEYSLAEEV-GLKKGREVHG 337
Query: 266 EISWTSMIDG-----------YLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFV 314
+ T ++D Y G +++A +F+ M D+D+V+W +MI+GL QN F+
Sbjct: 338 HVITTGLVDFMVGIGNGLVNMYAKCGSIADARRVFYFMTDKDSVSWNSMITGLDQNGCFI 397
Query: 315 EATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLI 374
EA + MR H + P + T + + LG+QIH +K + ++ + N L+
Sbjct: 398 EAVERYKSMRRHDILPGSFTLISSLSSCASLKWAKLGQQIHGESLKLGIDLNVSVSNALM 457
Query: 375 SMYAKCGVIDNAYNIFSNMVSRDLVSWNSMV--MGFSHHGLANETLKVFESMLESGTHPN 432
++YA+ G ++ IFS+M D VSWNS++ + S L E + F + +G N
Sbjct: 458 TLYAETGYLNECRKIFSSMPEHDQVSWNSIIGALARSERSLP-EAVVCFLNAQRAGQKLN 516
Query: 433 SVTFLGILSACSHAGLVSRGWELFN-AMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEF 491
+TF +LSA S G ++ A+ + + E+ ++I G+ G++ E+
Sbjct: 517 RITFSSVLSAVSSLSFGELGKQIHGLALKNNIADEATTEN--ALIACYGKCGEMDGCEKI 574
Query: 492 VLRLPFEPDHRIWGALL 508
R+ D+ W +++
Sbjct: 575 FSRMAERRDNVTWNSMI 591
Score = 94.7 bits (234), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 65/214 (30%), Positives = 101/214 (47%), Gaps = 9/214 (4%)
Query: 235 VQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPD 294
VQSC G RF +N D +D ++I+ YL G +A +F MP
Sbjct: 10 VQSCVGH-RGAARFFHSRLYKNRLD----KDVYLCNNLINAYLETGDSVSARKVFDEMPL 64
Query: 295 RDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDL--GR 352
R+ V+W ++SG +N EA +M G+ F + A ++ + GR
Sbjct: 65 RNCVSWACIVSGYSRNGEHKEALVFLRDMVKEGIFSNQYAFVSVLRACQEIGSVGILFGR 124
Query: 353 QIHCVLMKTESESDLILENCLISMYAKC-GVIDNAYNIFSNMVSRDLVSWNSMVMGFSHH 411
QIH ++ K D ++ N LISMY KC G + A F ++ ++ VSWNS++ +S
Sbjct: 125 QIHGLMFKLSYAVDAVVSNVLISMYWKCIGSVGYALCAFGDIEVKNSVSWNSIISVYSQA 184
Query: 412 GLANETLKVFESMLESGTHPNSVTFLGIL-SACS 444
G ++F SM G+ P TF ++ +ACS
Sbjct: 185 GDQRSAFRIFSSMQYDGSRPTEYTFGSLVTTACS 218
Score = 72.0 bits (175), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 65/247 (26%), Positives = 115/247 (46%), Gaps = 35/247 (14%)
Query: 8 KSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEE 67
+S VV ++ + YSK G +D A F MP RN S+N+M+SG+ ++G+ EA +LFE
Sbjct: 651 ESDVVVGSALVDMYSKCGRLDYALRFFNTMPVRNSYSWNSMISGYARHGQGEEALKLFET 710
Query: 68 M-------PERNVVSWTAMICGLADAGRVCEARKLFEEMPER-----NVVSWNSMVVGLI 115
M P+ V++ ++ + AG + E K FE M + + ++ M L
Sbjct: 711 MKLDGQTPPDH--VTFVGVLSACSHAGLLEEGFKHFESMSDSYGLAPRIEHFSCMADVLG 768
Query: 116 RNGELNEARKVFNSMPIK-NVISWNAMIAGYVECC--------MMGEAIVLFEEMEERNV 166
R GEL++ MP+K NV+ W ++ CC + +A + ++E N
Sbjct: 769 RAGELDKLEDFIEKMPMKPNVLIWRTVLGA---CCRANGRKAELGKKAAEMLFQLEPENA 825
Query: 167 VTWTSMISGYCRAGEVEEGYCLFRRMPRKNV-----VSWTAMIGG----FAWNGFHKESL 217
V + + + Y G E+ ++M +V SW M G A + H ++
Sbjct: 826 VNYVLLGNMYAAGGRWEDLVKARKKMKDADVKKEAGYSWVTMKDGVHMFVAGDKSHPDAD 885
Query: 218 LLFIEMK 224
+++ ++K
Sbjct: 886 VIYKKLK 892
Score = 57.8 bits (138), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 47/99 (47%)
Query: 351 GRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSH 410
R H L K + D+ L N LI+ Y + G +A +F M R+ VSW +V G+S
Sbjct: 20 ARFFHSRLYKNRLDKDVYLCNNLINAYLETGDSVSARKVFDEMPLRNCVSWACIVSGYSR 79
Query: 411 HGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLV 449
+G E L M++ G N F+ +L AC G V
Sbjct: 80 NGEHKEALVFLRDMVKEGIFSNQYAFVSVLRACQEIGSV 118
>sp|Q3E6Q1|PPR32_ARATH Pentatricopeptide repeat-containing protein At1g11290
OS=Arabidopsis thaliana GN=PCMP-H40 PE=2 SV=1
Length = 809
Score = 290 bits (742), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 189/625 (30%), Positives = 308/625 (49%), Gaps = 55/625 (8%)
Query: 15 TSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNV- 73
T ++ + + G +DEA +F+ + + V Y+ ML GF + L +A + F M +V
Sbjct: 73 TKLVSLFCRYGSVDEAARVFEPIDSKLNVLYHTMLKGFAKVSDLDKALQFFVRMRYDDVE 132
Query: 74 -----VSWTAMICGLADAGRVCEARK--LFEEMPERNVVSWNSMVVGLIRNGELNEARKV 126
++ +CG RV + L + ++ + + + ++NEARKV
Sbjct: 133 PVVYNFTYLLKVCGDEAELRVGKEIHGLLVKSGFSLDLFAMTGLENMYAKCRQVNEARKV 192
Query: 127 FNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERN--------------------- 165
F+ MP ++++SWN ++AGY + M A+ + + M E N
Sbjct: 193 FDRMPERDLVSWNTIVAGYSQNGMARMALEMVKSMCEENLKPSFITIVSVLPAVSALRLI 252
Query: 166 ------------------VVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGF 207
V T+++ Y + G +E LF M +NVVSW +MI +
Sbjct: 253 SVGKEIHGYAMRSGFDSLVNISTALVDMYAKCGSLETARQLFDGMLERNVVSWNSMIDAY 312
Query: 208 AWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFD-TVPV--- 263
N KE++L+F +M D G S ++ G LE + + +V +
Sbjct: 313 VQNENPKEAMLIFQKM---LDEGVKPTDVSVMGALHACADLGDLERGRFIHKLSVELGLD 369
Query: 264 RDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEM 323
R+ S+I Y +V A +F + R V+W AMI G QN ++A F +M
Sbjct: 370 RNVSVVNSLISMYCKCKEVDTAASMFGKLQSRTLVSWNAMILGFAQNGRPIDALNYFSQM 429
Query: 324 RAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVI 383
R+ V P T+ + A + + IH V+M++ + ++ + L+ MYAKCG I
Sbjct: 430 RSRTVKPDTFTYVSVITAIAELSITHHAKWIHGVVMRSCLDKNVFVTTALVDMYAKCGAI 489
Query: 384 DNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSAC 443
A IF M R + +WN+M+ G+ HG L++FE M + PN VTFL ++SAC
Sbjct: 490 MIARLIFDMMSERHVTTWNAMIDGYGTHGFGKAALELFEEMQKGTIKPNGVTFLSVISAC 549
Query: 444 SHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRI 503
SH+GLV G + F M + Y I+ +HY +M++LLGRAG++ EA +F++++P +P +
Sbjct: 550 SHSGLVEAGLKCFYMMKENYSIELSMDHYGAMVDLLGRAGRLNEAWDFIMQMPVKPAVNV 609
Query: 504 WGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMG 563
+GA+LGAC N AE AA+RL EL+P + HV+L NIY A+ + ++R+ M
Sbjct: 610 YGAMLGACQI-HKNVNFAEKAAERLFELNPDDGGYHVLLANIYRAASMWEKVGQVRVSML 668
Query: 564 LKGVRKVPGCSWLMRNGGIQMFLSG 588
+G+RK PGCS + + F SG
Sbjct: 669 RQGLRKTPGCSMVEIKNEVHSFFSG 693
Score = 99.4 bits (246), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 92/358 (25%), Positives = 154/358 (43%), Gaps = 55/358 (15%)
Query: 4 RNHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARR 63
R+ SLV T+ + Y+K G ++ A+ LF M +RNVVS+N+M+ ++QN EA
Sbjct: 264 RSGFDSLVNISTALVDMYAKCGSLETARQLFDGMLERNVVSWNSMIDAYVQNENPKEAML 323
Query: 64 LFEEMPERNV----VSWTAMICGLADAGRVCEAR---KLFEEMP-ERNVVSWNSMVVGLI 115
+F++M + V VS + AD G + R KL E+ +RNV NS++
Sbjct: 324 IFQKMLDEGVKPTDVSVMGALHACADLGDLERGRFIHKLSVELGLDRNVSVVNSLISMYC 383
Query: 116 RNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEER----------- 164
+ E++ A +F + + ++SWNAMI G+ + +A+ F +M R
Sbjct: 384 KCKEVDTAASMFGKLQSRTLVSWNAMILGFAQNGRPIDALNYFSQMRSRTVKPDTFTYVS 443
Query: 165 ----------------------------NVVTWTSMISGYCRAGEVEEGYCLFRRMPRKN 196
NV T+++ Y + G + +F M ++
Sbjct: 444 VITAIAELSITHHAKWIHGVVMRSCLDKNVFVTTALVDMYAKCGAIMIARLIFDMMSERH 503
Query: 197 VVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQN 256
V +W AMI G+ +GF K +L LF EM+ N S+I+ G +E
Sbjct: 504 VTTWNAMIDGYGTHGFGKAALELFEEMQKGTIKPNGVTFL---SVISACSHSGLVEAGLK 560
Query: 257 LFDTVPVRDEIS-----WTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQ 309
F + I + +M+D G+++ A+ MP + AV + G Q
Sbjct: 561 CFYMMKENYSIELSMDHYGAMVDLLGRAGRLNEAWDFIMQMPVKPAVNVYGAMLGACQ 618
Score = 42.7 bits (99), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 42/191 (21%), Positives = 80/191 (41%), Gaps = 27/191 (14%)
Query: 352 RQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHH 411
RQI ++ K + + L+S++ + G +D A +F + S+ V +++M+ GF+
Sbjct: 54 RQILPLVFKNGLYQEHFFQTKLVSLFCRYGSVDEAARVFEPIDSKLNVLYHTMLKGFAKV 113
Query: 412 GLANETLKVFESMLESGTHPNSVTFLGILSACS-----------HAGLVSRGWELFNAMF 460
++ L+ F M P F +L C H LV G+ L
Sbjct: 114 SDLDKALQFFVRMRYDDVEPVVYNFTYLLKVCGDEAELRVGKEIHGLLVKSGFSL----- 168
Query: 461 DVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCE-GNAE 519
D++ + + N+ + ++ EA + R+P E D W ++ G+ + G A
Sbjct: 169 DLFAM-------TGLENMYAKCRQVNEARKVFDRMP-ERDLVSWNTIVA--GYSQNGMAR 218
Query: 520 IAEHAAKRLLE 530
+A K + E
Sbjct: 219 MALEMVKSMCE 229
>sp|Q9SJK9|PP189_ARATH Pentatricopeptide repeat-containing protein At2g36980,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E73 PE=2
SV=1
Length = 625
Score = 289 bits (740), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 177/610 (29%), Positives = 319/610 (52%), Gaps = 25/610 (4%)
Query: 9 SLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEM 68
S++V LTS I +K G I A+ +F MP+ + V++N ML+ + + G EA LF ++
Sbjct: 2 SVLVRLTSKIASLAKSGRIASARQVFDGMPELDTVAWNTMLTSYSRLGLHQEAIALFTQL 61
Query: 69 ----PERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSW----NSMVVGLIRNGEL 120
+ + S+TA++ A G V RK+ + + NS++ + +
Sbjct: 62 RFSDAKPDDYSFTAILSTCASLGNVKFGRKIQSLVIRSGFCASLPVNNSLIDMYGKCSDT 121
Query: 121 NEARKVFNSM--PIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCR 178
A KVF M +N ++W +++ Y+ A+ +F EM +R W MISG+
Sbjct: 122 LSANKVFRDMCCDSRNEVTWCSLLFAYMNAEQFEAALDVFVEMPKRVAFAWNIMISGHAH 181
Query: 179 AGEVEEGYCLFRRMP----RKNVVSWTAMIGGFAWNGFHKESLLLFIEM--KGICDNGNN 232
G++E LF+ M + + ++++++ + + S +++ M + NG +
Sbjct: 182 CGKLESCLSLFKEMLESEFKPDCYTFSSLMNACSAD----SSNVVYGRMVHAVMLKNGWS 237
Query: 233 CNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNM 292
V++ NS+++ Y + G ++A +++ V ++SW S+ID + +G+ A +FH
Sbjct: 238 SAVEAKNSVLSFYTKLGSRDDAMRELESIEVLTQVSWNSIIDACMKIGETEKALEVFHLA 297
Query: 293 PDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGR 352
P+++ V WT MI+G +N +A F+EM GV + + + A A + G+
Sbjct: 298 PEKNIVTWTTMITGYGRNGDGEQALRFFVEMMKSGVDSDHFAYGAVLHACSGLALLGHGK 357
Query: 353 QIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHG 412
IH L+ + + N L+++YAKCG I A F ++ ++DLVSWN+M+ F HG
Sbjct: 358 MIHGCLIHCGFQGYAYVGNALVNLYAKCGDIKEADRAFGDIANKDLVSWNTMLFAFGVHG 417
Query: 413 LANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHY 472
LA++ LK++++M+ SG P++VTF+G+L+ CSH+GLV G +F +M Y+I +H
Sbjct: 418 LADQALKLYDNMIASGIKPDNVTFIGLLTTCSHSGLVEEGCMIFESMVKDYRIPLEVDHV 477
Query: 473 VSMINLLGRAGKIKEAEEFVLR----LPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRL 528
MI++ GR G + EA++ + ++ W LLGAC + E+ +K L
Sbjct: 478 TCMIDMFGRGGHLAEAKDLATTYSSLVTDSSNNSSWETLLGACS-THWHTELGREVSKVL 536
Query: 529 LELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSG 588
+P + V+L N+Y ++GR E +R +M +G++K PGCSW+ + F+ G
Sbjct: 537 KIAEPSEEMSFVLLSNLYCSTGRWKEGEDVRREMVERGMKKTPGCSWIEVGNQVSTFVVG 596
Query: 589 DKIPAQVAEI 598
D ++ E+
Sbjct: 597 DSSHPRLEEL 606
Score = 70.9 bits (172), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 74/331 (22%), Positives = 137/331 (41%), Gaps = 57/331 (17%)
Query: 4 RNHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARR 63
+N S V S ++ Y+K G D+A + + VS+N+++ ++ G +A
Sbjct: 233 KNGWSSAVEAKNSVLSFYTKLGSRDDAMRELESIEVLTQVSWNSIIDACMKIGETEKALE 292
Query: 64 LFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVS----------------- 106
+F PE+N+V+WT MI G G +A + F EM + V S
Sbjct: 293 VFHLAPEKNIVTWTTMITGYGRNGDGEQALRFFVEMMKSGVDSDHFAYGAVLHACSGLAL 352
Query: 107 ----------------------WNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAG 144
N++V + G++ EA + F + K+++SWN M+
Sbjct: 353 LGHGKMIHGCLIHCGFQGYAYVGNALVNLYAKCGDIKEADRAFGDIANKDLVSWNTMLFA 412
Query: 145 YVECCMMGEAIVLFEEMEERNV----VTWTSMISGYCRAGEVEEGYCLFRRMPRK----- 195
+ + +A+ L++ M + VT+ +++ +G VEEG +F M +
Sbjct: 413 FGVHGLADQALKLYDNMIASGIKPDNVTFIGLLTTCSHSGLVEEGCMIFESMVKDYRIPL 472
Query: 196 NVVSWTAMIGGFAWNGFHKESLLLFIEMKG-ICDNGNNCNVQS----CNSMINGYIRFGR 250
V T MI F G E+ L + D+ NN + ++ C++ + + GR
Sbjct: 473 EVDHVTCMIDMFGRGGHLAEAKDLATTYSSLVTDSSNNSSWETLLGACST--HWHTELGR 530
Query: 251 LEEAQNLFDTVPVRDEISWTSMIDGYLSVGQ 281
E + +E+S+ + + Y S G+
Sbjct: 531 --EVSKVLKIAEPSEEMSFVLLSNLYCSTGR 559
>sp|Q9ZUT5|PP191_ARATH Pentatricopeptide repeat-containing protein At2g37310
OS=Arabidopsis thaliana GN=PCMP-E49 PE=2 SV=1
Length = 657
Score = 288 bits (738), Expect = 7e-77, Method: Compositional matrix adjust.
Identities = 176/583 (30%), Positives = 295/583 (50%), Gaps = 35/583 (6%)
Query: 18 ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWT 77
I+ Y+++ +A +F + RN SYNA+L + +A LF +SW
Sbjct: 64 ISFYTRQDRFRQALHVFDEITVRNAFSYNALLIAYTSREMYFDAFSLF--------LSWI 115
Query: 78 AMICGLADAGR-----VCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPI 132
C +DA R + K + + S V G + G +
Sbjct: 116 GSSCYSSDAARPDSISISCVLKALSGCDDFWLGSLARQVHGFVIRGGFD----------- 164
Query: 133 KNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRM 192
+V N MI Y +C + A +F+EM ER+VV+W SMISGY ++G E+ +++ M
Sbjct: 165 SDVFVGNGMITYYTKCDNIESARKVFDEMSERDVVSWNSMISGYSQSGSFEDCKKMYKAM 224
Query: 193 P-----RKNVVSWTAMIGGFAWNGFHKESLLLFIEM-KGICDNGNNCNVQSCNSMINGYI 246
+ N V+ +I F G L+ +E+ K + +N ++ CN++I Y
Sbjct: 225 LACSDFKPNGVT---VISVFQACG-QSSDLIFGLEVHKKMIENHIQMDLSLCNAVIGFYA 280
Query: 247 RFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISG 306
+ G L+ A+ LFD + +D +++ ++I GY++ G V A LF M W AMISG
Sbjct: 281 KCGSLDYARALFDEMSEKDSVTYGAIISGYMAHGLVKEAMALFSEMESIGLSTWNAMISG 340
Query: 307 LVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESD 366
L+QN E F EM G P T S L + ++N+ G++IH ++ ++++
Sbjct: 341 LMQNNHHEEVINSFREMIRCGSRPNTVTLSSLLPSLTYSSNLKGGKEIHAFAIRNGADNN 400
Query: 367 LILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLE 426
+ + +I YAK G + A +F N R L++W +++ ++ HG ++ +F+ M
Sbjct: 401 IYVTTSIIDNYAKLGFLLGAQRVFDNCKDRSLIAWTAIITAYAVHGDSDSACSLFDQMQC 460
Query: 427 SGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIK 486
GT P+ VT +LSA +H+G +F++M Y I+PG EHY M+++L RAGK+
Sbjct: 461 LGTKPDDVTLTAVLSAFAHSGDSDMAQHIFDSMLTKYDIEPGVEHYACMVSVLSRAGKLS 520
Query: 487 EAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIY 546
+A EF+ ++P +P ++WGALL G+ EIA A RL E++P N + ++ N+Y
Sbjct: 521 DAMEFISKMPIDPIAKVWGALLNGASVL-GDLEIARFACDRLFEMEPENTGNYTIMANLY 579
Query: 547 AASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGD 589
+GR E +R M G++K+PG SW+ G++ F++ D
Sbjct: 580 TQAGRWEEAEMVRNKMKRIGLKKIPGTSWIETEKGLRSFIAKD 622
Score = 92.8 bits (229), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 82/385 (21%), Positives = 155/385 (40%), Gaps = 94/385 (24%)
Query: 123 ARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEV 182
AR V S+ N ++ + +I+ Y +A+ +F+E+ RN ++ +++ Y
Sbjct: 46 ARIVVFSIKPDNFLA-SKLISFYTRQDRFRQALHVFDEITVRNAFSYNALLIAYTSREMY 104
Query: 183 EEGYCLFRRMPRKNVVSWTAMIGG--FAWNGFHKESLLLFIEMKGI--CDN--------- 229
+ + LF +SW IG ++ + +S+ + +K + CD+
Sbjct: 105 FDAFSLF--------LSW---IGSSCYSSDAARPDSISISCVLKALSGCDDFWLGSLARQ 153
Query: 230 --------GNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQ 281
G + +V N MI Y + +E A+ +FD + RD +SW SMI GY G
Sbjct: 154 VHGFVIRGGFDSDVFVGNGMITYYTKCDNIESARKVFDEMSERDVVSWNSMISGYSQSGS 213
Query: 282 VSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGA 341
+ ++ M + P T +F A
Sbjct: 214 FEDCKKMYKAM------------------------------LACSDFKPNGVTVISVFQA 243
Query: 342 AGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSW 401
G ++++ G ++H +++ + DL L N +I YAKCG +D A +F M +D V++
Sbjct: 244 CGQSSDLIFGLEVHKKMIENHIQMDLSLCNAVIGFYAKCGSLDYARALFDEMSEKDSVTY 303
Query: 402 NSMVMGFSHHGLANETLKV-------------------------------FESMLESGTH 430
+++ G+ HGL E + + F M+ G+
Sbjct: 304 GAIISGYMAHGLVKEAMALFSEMESIGLSTWNAMISGLMQNNHHEEVINSFREMIRCGSR 363
Query: 431 PNSVTFLGILSACSHAGLVSRGWEL 455
PN+VT +L + +++ + G E+
Sbjct: 364 PNTVTLSSLLPSLTYSSNLKGGKEI 388
Score = 68.2 bits (165), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 57/207 (27%), Positives = 101/207 (48%), Gaps = 19/207 (9%)
Query: 4 RNHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARR 63
RN + + TS I Y+K GF+ A+ +F R+++++ A+++ + +G A
Sbjct: 394 RNGADNNIYVTTSIIDNYAKLGFLLGAQRVFDNCKDRSLIAWTAIITAYAVHGDSDSACS 453
Query: 64 LFEEM----PERNVVSWTAMICGLADAGRVCEARKLFEEM-----PERNVVSWNSMVVGL 114
LF++M + + V+ TA++ A +G A+ +F+ M E V + MV L
Sbjct: 454 LFDQMQCLGTKPDDVTLTAVLSAFAHSGDSDMAQHIFDSMLTKYDIEPGVEHYACMVSVL 513
Query: 115 IRNGELNEARKVFNSMPIKNVIS-WNAMIAGYVECCMMGE-AIVLFE-----EMEERNVV 167
R G+L++A + + MPI + W A++ G ++G+ I F EME N
Sbjct: 514 SRAGKLSDAMEFISKMPIDPIAKVWGALLNG---ASVLGDLEIARFACDRLFEMEPENTG 570
Query: 168 TWTSMISGYCRAGEVEEGYCLFRRMPR 194
+T M + Y +AG EE + +M R
Sbjct: 571 NYTIMANLYTQAGRWEEAEMVRNKMKR 597
Score = 34.7 bits (78), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 21/98 (21%), Positives = 47/98 (47%), Gaps = 6/98 (6%)
Query: 353 QIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHG 412
Q+H ++ + D L + LIS Y + A ++F + R+ S+N++++ ++
Sbjct: 43 QLHARIVVFSIKPDNFLASKLISFYTRQDRFRQALHVFDEITVRNAFSYNALLIAYTSRE 102
Query: 413 LANETLKVFESMLESGTH------PNSVTFLGILSACS 444
+ + +F S + S + P+S++ +L A S
Sbjct: 103 MYFDAFSLFLSWIGSSCYSSDAARPDSISISCVLKALS 140
>sp|Q9FWA6|PP207_ARATH Pentatricopeptide repeat-containing protein At3g02330
OS=Arabidopsis thaliana GN=PCMP-E90 PE=2 SV=2
Length = 903
Score = 288 bits (736), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 188/667 (28%), Positives = 304/667 (45%), Gaps = 120/667 (17%)
Query: 41 NVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMP 100
+VV+ +A+L + + R E+ R+F+ +PE+N VSW+A+I G + A K F+EM
Sbjct: 214 DVVAASALLDMYAKGKRFVESLRVFQGIPEKNSVSWSAIIAGCVQNNLLSLALKFFKEMQ 273
Query: 101 ERNVVSWNSMVV------------------------------GLIRNGELN--------- 121
+ N S+ G++R L+
Sbjct: 274 KVNAGVSQSIYASVLRSCAALSELRLGGQLHAHALKSDFAADGIVRTATLDMYAKCDNMQ 333
Query: 122 EARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLF----------EEMEERNVVTWTS 171
+A+ +F++ N S+NAMI GY + +A++LF +E+ V +
Sbjct: 334 DAQILFDNSENLNRQSYNAMITGYSQEEHGFKALLLFHRLMSSGLGFDEISLSGVFRACA 393
Query: 172 MISG-----------------------------YCRAGEVEEGYCLFRRMPRKNVVSWTA 202
++ G Y + + E + +F M R++ VSW A
Sbjct: 394 LVKGLSEGLQIYGLAIKSSLSLDVCVANAAIDMYGKCQALAEAFRVFDEMRRRDAVSWNA 453
Query: 203 MIGGFAWNGFHKESLLLFIEM-------------------------------KGICDNGN 231
+I NG E+L LF+ M I +G
Sbjct: 454 IIAAHEQNGKGYETLFLFVSMLRSRIEPDEFTFGSILKACTGGSLGYGMEIHSSIVKSGM 513
Query: 232 NCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHN 291
N S+I+ Y + G +EEA+ + R +S G + + +
Sbjct: 514 ASNSSVGCSLIDMYSKCGMIEEAEKIHSRFFQRANVS-----------GTMEELEKMHNK 562
Query: 292 MPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLG 351
V+W ++ISG V E +A LF M G+ P T++ + A+ LG
Sbjct: 563 RLQEMCVSWNSIISGYVMKEQSEDAQMLFTRMMEMGITPDKFTYATVLDTCANLASAGLG 622
Query: 352 RQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHH 411
+QIH ++K E +SD+ + + L+ MY+KCG + ++ +F + RD V+WN+M+ G++HH
Sbjct: 623 KQIHAQVIKKELQSDVYICSTLVDMYSKCGDLHDSRLMFEKSLRRDFVTWNAMICGYAHH 682
Query: 412 GLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEH 471
G E +++FE M+ PN VTF+ IL AC+H GL+ +G E F M Y + P H
Sbjct: 683 GKGEEAIQLFERMILENIKPNHVTFISILRACAHMGLIDKGLEYFYMMKRDYGLDPQLPH 742
Query: 472 YVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLEL 531
Y +M+++LG++GK+K A E + +PFE D IW LLG C N E+AE A LL L
Sbjct: 743 YSNMVDILGKSGKVKRALELIREMPFEADDVIWRTLLGVCTIHRNNVEVAEEATAALLRL 802
Query: 532 DPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKI 591
DP ++ A+ +L N+YA +G + LR +M ++K PGCSW+ + +FL GDK
Sbjct: 803 DPQDSSAYTLLSNVYADAGMWEKVSDLRRNMRGFKLKKEPGCSWVELKDELHVFLVGDKA 862
Query: 592 PAQVAEI 598
+ EI
Sbjct: 863 HPRWEEI 869
Score = 184 bits (468), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 132/462 (28%), Positives = 221/462 (47%), Gaps = 17/462 (3%)
Query: 46 NAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVV 105
N +L + + A +F++MP R+VVSW MI G + + + +A F MP R+VV
Sbjct: 87 NCLLQVYTNSRDFVSASMVFDKMPLRDVVSWNKMINGYSKSNDMFKANSFFNMMPVRDVV 146
Query: 106 SWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEME--- 162
SWNSM+ G ++NGE ++ +VF M + + A ++ C E L ++
Sbjct: 147 SWNSMLSGYLQNGESLKSIEVFVDMGREGIEFDGRTFAIILKVCSFLEDTSLGMQIHGIV 206
Query: 163 -----ERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESL 217
+ +VV ++++ Y + E +F+ +P KN VSW+A+I G N +L
Sbjct: 207 VRVGCDTDVVAASALLDMYAKGKRFVESLRVFQGIPEKNSVSWSAIIAGCVQNNLLSLAL 266
Query: 218 LLFIEMK----GICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMI 273
F EM+ G+ + ++SC ++ +R G A L D I T+ +
Sbjct: 267 KFFKEMQKVNAGVSQSIYASVLRSCAAL--SELRLGGQLHAHALKSDFAA-DGIVRTATL 323
Query: 274 DGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNA 333
D Y + +A LF N + + ++ AMI+G Q E +A LF + + G+
Sbjct: 324 DMYAKCDNMQDAQILFDNSENLNRQSYNAMITGYSQEEHGFKALLLFHRLMSSGLGFDEI 383
Query: 334 TFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNM 393
+ S +F A + G QI+ + +K+ D+ + N I MY KC + A+ +F M
Sbjct: 384 SLSGVFRACALVKGLSEGLQIYGLAIKSSLSLDVCVANAAIDMYGKCQALAEAFRVFDEM 443
Query: 394 VSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGW 453
RD VSWN+++ +G ETL +F SML S P+ TF IL AC+ G + G
Sbjct: 444 RRRDAVSWNAIIAAHEQNGKGYETLFLFVSMLRSRIEPDEFTFGSILKACT-GGSLGYGM 502
Query: 454 ELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRL 495
E+ +++ + S+I++ + G I+EAE+ R
Sbjct: 503 EIHSSIVKS-GMASNSSVGCSLIDMYSKCGMIEEAEKIHSRF 543
Score = 157 bits (398), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 149/622 (23%), Positives = 268/622 (43%), Gaps = 98/622 (15%)
Query: 7 PKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFE 66
P VV I YSK + +A + F +MP R+VVS+N+MLSG+LQNG ++ +F
Sbjct: 110 PLRDVVSWNKMINGYSKSNDMFKANSFFNMMPVRDVVSWNSMLSGYLQNGESLKSIEVFV 169
Query: 67 EMP---------------------------------------ERNVVSWTAMICGLADAG 87
+M + +VV+ +A++ A
Sbjct: 170 DMGREGIEFDGRTFAIILKVCSFLEDTSLGMQIHGIVVRVGCDTDVVAASALLDMYAKGK 229
Query: 88 RVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVE 147
R E+ ++F+ +PE+N VSW++++ G ++N L+ A K F M N ++ A +
Sbjct: 230 RFVESLRVFQGIPEKNSVSWSAIIAGCVQNNLLSLALKFFKEMQKVNAGVSQSIYASVLR 289
Query: 148 CCMMGEAIVLFEEMEERNV--------VTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVS 199
C + L ++ + + T+ + Y + +++ LF N S
Sbjct: 290 SCAALSELRLGGQLHAHALKSDFAADGIVRTATLDMYAKCDNMQDAQILFDNSENLNRQS 349
Query: 200 WTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFD 259
+ AMI G++ ++LLLF + +G + S + + L E ++
Sbjct: 350 YNAMITGYSQEEHGFKALLLF---HRLMSSGLGFDEISLSGVFRACALVKGLSEGLQIY- 405
Query: 260 TVPVRDEISW-----TSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFV 314
+ ++ +S + ID Y ++ A+ +F M RDAV+W A+I+ QN
Sbjct: 406 GLAIKSSLSLDVCVANAAIDMYGKCQALAEAFRVFDEMRRRDAVSWNAIIAAHEQNGKGY 465
Query: 315 EATYLFMEMRAHGVPPLNATF-SVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCL 373
E +LF+ M + P TF S+L G + + G +IH ++K+ S+ + L
Sbjct: 466 ETLFLFVSMLRSRIEPDEFTFGSILKACTGGS--LGYGMEIHSSIVKSGMASNSSVGCSL 523
Query: 374 ISMYAKCGVIDNAYNIFSNMVSRD--------------------LVSWNSMVMGFSHHGL 413
I MY+KCG+I+ A I S R VSWNS++ G+
Sbjct: 524 IDMYSKCGMIEEAEKIHSRFFQRANVSGTMEELEKMHNKRLQEMCVSWNSIISGYVMKEQ 583
Query: 414 ANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYV 473
+ + +F M+E G P+ T+ +L C++ G ++ V K + + Y+
Sbjct: 584 SEDAQMLFTRMMEMGITPDKFTYATVLDTCANLASAGLGKQIHA---QVIKKELQSDVYI 640
Query: 474 --SMINLLGRAGKIKEAEEFVLRLPFEP----DHRIWGALLGACGFC-EGNAEIAEHAAK 526
+++++ + G + ++ RL FE D W A++ CG+ G E A +
Sbjct: 641 CSTLVDMYSKCGDLHDS-----RLMFEKSLRRDFVTWNAMI--CGYAHHGKGEEAIQLFE 693
Query: 527 RLLELDPLNAPAHVVLCNIYAA 548
R++ L+ + P HV +I A
Sbjct: 694 RMI-LENIK-PNHVTFISILRA 713
Score = 64.7 bits (156), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 83/366 (22%), Positives = 152/366 (41%), Gaps = 85/366 (23%)
Query: 16 SSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEM------P 69
++I Y K + EA +F M +R+ VS+NA+++ QNG+ E LF M P
Sbjct: 422 AAIDMYGKCQALAEAFRVFDEMRRRDAVSWNAIIAAHEQNGKGYETLFLFVSMLRSRIEP 481
Query: 70 ER----------------------------NVVSWTAMICGLAD----AGRVCEARKLFE 97
+ + S +++ C L D G + EA K+
Sbjct: 482 DEFTFGSILKACTGGSLGYGMEIHSSIVKSGMASNSSVGCSLIDMYSKCGMIEEAEKIHS 541
Query: 98 EMPER-NV-------------------VSWNSMVVGLIRNGELNEARKVFNSMPIKNVIS 137
+R NV VSWNS++ G + + +A+ +F M +
Sbjct: 542 RFFQRANVSGTMEELEKMHNKRLQEMCVSWNSIISGYVMKEQSEDAQMLFTRMMEMGITP 601
Query: 138 WNAMIAGYVECCM------MGEAI---VLFEEMEERNVVTWTSMISGYCRAGEVEEGYCL 188
A ++ C +G+ I V+ +E++ +V ++++ Y + G++ + +
Sbjct: 602 DKFTYATVLDTCANLASAGLGKQIHAQVIKKELQS-DVYICSTLVDMYSKCGDLHDSRLM 660
Query: 189 FRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNV------QSCNSM- 241
F + R++ V+W AMI G+A +G +E++ LF M I +N +V ++C M
Sbjct: 661 FEKSLRRDFVTWNAMICGYAHHGKGEEAIQLFERM--ILENIKPNHVTFISILRACAHMG 718
Query: 242 --INGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMP-DRDAV 298
G F ++ L +P +++M+D G+V A L MP + D V
Sbjct: 719 LIDKGLEYFYMMKRDYGLDPQLP-----HYSNMVDILGKSGKVKRALELIREMPFEADDV 773
Query: 299 AWTAMI 304
W ++
Sbjct: 774 IWRTLL 779
Score = 52.4 bits (124), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 66/316 (20%), Positives = 120/316 (37%), Gaps = 71/316 (22%)
Query: 332 NATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFS 391
FS +F ++LG+Q H ++ + + NCL+ +Y +A +F
Sbjct: 48 TTNFSFVFKECAKQGALELGKQAHAHMIISGFRPTTFVLNCLLQVYTNSRDFVSASMVFD 107
Query: 392 NMVSRDLVSWNSMVMGFS-------------------------------HHGLANETLKV 420
M RD+VSWN M+ G+S +G + ++++V
Sbjct: 108 KMPLRDVVSWNKMINGYSKSNDMFKANSFFNMMPVRDVVSWNSMLSGYLQNGESLKSIEV 167
Query: 421 FESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYV----SMI 476
F M G + TF IL CS S G ++ + ++ G + V +++
Sbjct: 168 FVDMGREGIEFDGRTFAIILKVCSFLEDTSLGMQIHGIV-----VRVGCDTDVVAASALL 222
Query: 477 NLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNA 536
++ + + E+ +P E + W A++ C + N + A K E+ +NA
Sbjct: 223 DMYAKGKRFVESLRVFQGIP-EKNSVSWSAIIAGC--VQNN--LLSLALKFFKEMQKVNA 277
Query: 537 PAHVVLCNIYAAS------------GRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQM 584
V +IYA+ G + H L+ D G+ +R + M
Sbjct: 278 G---VSQSIYASVLRSCAALSELRLGGQLHAHALKSDFAADGI---------VRTATLDM 325
Query: 585 FLSGDKIPAQVAEILL 600
+ D + Q A+IL
Sbjct: 326 YAKCDNM--QDAQILF 339
Score = 50.8 bits (120), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 56/251 (22%), Positives = 120/251 (47%), Gaps = 35/251 (13%)
Query: 12 VHLTSSITK-YSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPE 70
V++ S++ YSK G + +++ +F+ +R+ V++NAM+ G+ +G+ EA +LFE M
Sbjct: 638 VYICSTLVDMYSKCGDLHDSRLMFEKSLRRDFVTWNAMICGYAHHGKGEEAIQLFERMIL 697
Query: 71 RNV----VSWTAMICGLADAGRVCEARKLFEEMP-----ERNVVSWNSMVVGLIRNGELN 121
N+ V++ +++ A G + + + F M + + +++MV L ++G++
Sbjct: 698 ENIKPNHVTFISILRACAHMGLIDKGLEYFYMMKRDYGLDPQLPHYSNMVDILGKSGKVK 757
Query: 122 EARKVFNSMPIK-NVISWNAMIA------GYVECCMMGEAIVLFEEMEERNVVTWTSMIS 174
A ++ MP + + + W ++ VE + EA ++ ++ +T + +
Sbjct: 758 RALELIREMPFEADDVIWRTLLGVCTIHRNNVE--VAEEATAALLRLDPQDSSAYTLLSN 815
Query: 175 GYCRAGEVEEGYCLFR-----RMPRKNVVSWTA--------MIGGFA---WNGFHKESLL 218
Y AG E+ L R ++ ++ SW ++G A W ++E L
Sbjct: 816 VYADAGMWEKVSDLRRNMRGFKLKKEPGCSWVELKDELHVFLVGDKAHPRWEEIYEELGL 875
Query: 219 LFIEMKGICDN 229
++ EMK D+
Sbjct: 876 IYSEMKPFDDS 886
>sp|Q9MA85|PP215_ARATH Pentatricopeptide repeat-containing protein At3g05340
OS=Arabidopsis thaliana GN=PCMP-E83 PE=2 SV=2
Length = 658
Score = 287 bits (734), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 171/538 (31%), Positives = 280/538 (52%), Gaps = 17/538 (3%)
Query: 73 VVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKV------ 126
+V W +++ A G++ +A KLF+EMP R+V+S N + G +RN E +
Sbjct: 90 LVVWNSLLSLYAKCGKLVDAIKLFDEMPMRDVISQNIVFYGFLRNRETESGFVLLKRMLG 149
Query: 127 ---FNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEME--ERNVVTWTSMISGYCRAGE 181
F+ + V+S + E C++ + I + ++ + +I+ Y + G
Sbjct: 150 SGGFDHATLTIVLS----VCDTPEFCLVTKMIHALAILSGYDKEISVGNKLITSYFKCGC 205
Query: 182 VEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSM 241
G +F M +NV++ TA+I G N H++ L LF M+ + N+ S +
Sbjct: 206 SVSGRGVFDGMSHRNVITLTAVISGLIENELHEDGLRLFSLMRRGLVHPNSVTYLSALAA 265
Query: 242 INGYIRFGRLEEAQNLFDTVPVRDEISWTS-MIDGYLSVGQVSNAYYLFHNMPDRDAVAW 300
+G R ++ L + E+ S ++D Y G + +A+ +F + + D V+
Sbjct: 266 CSGSQRIVEGQQIHALLWKYGIESELCIESALMDMYSKCGSIEDAWTIFESTTEVDEVSM 325
Query: 301 TAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMK 360
T ++ GL QN EA F+ M GV S + G + ++ LG+Q+H +++K
Sbjct: 326 TVILVGLAQNGSEEEAIQFFIRMLQAGVEIDANVVSAVLGVSFIDNSLGLGKQLHSLVIK 385
Query: 361 TESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKV 420
+ + + N LI+MY+KCG + ++ +F M R+ VSWNSM+ F+ HG LK+
Sbjct: 386 RKFSGNTFVNNGLINMYSKCGDLTDSQTVFRRMPKRNYVSWNSMIAAFARHGHGLAALKL 445
Query: 421 FESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLG 480
+E M P VTFL +L ACSH GL+ +G EL N M +V+ I+P EHY +I++LG
Sbjct: 446 YEEMTTLEVKPTDVTFLSLLHACSHVGLIDKGRELLNEMKEVHGIEPRTEHYTCIIDMLG 505
Query: 481 RAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHV 540
RAG +KEA+ F+ LP +PD +IW ALLGAC F G+ E+ E+AA++L + P ++ AH+
Sbjct: 506 RAGLLKEAKSFIDSLPLKPDCKIWQALLGACSF-HGDTEVGEYAAEQLFQTAPDSSSAHI 564
Query: 541 VLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
++ NIY++ G+ E K M GV K G S + F+ DK+ Q I
Sbjct: 565 LIANIYSSRGKWKERAKTIKRMKAMGVTKETGISSIEIEHKTHSFVVEDKLHPQAEAI 622
Score = 122 bits (307), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 104/414 (25%), Positives = 186/414 (44%), Gaps = 51/414 (12%)
Query: 160 EMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLL 219
++ +V W S++S Y + G++ + LF MP ++V+S + GF N + +L
Sbjct: 84 DIHRNALVVWNSLLSLYAKCGKLVDAIKLFDEMPMRDVISQNIVFYGFLRNRETESGFVL 143
Query: 220 FIEMKG--------------ICDNGNNCNVQS---CNSMINGYIRFGRLEEAQNLFDTVP 262
M G +CD C V ++++GY +
Sbjct: 144 LKRMLGSGGFDHATLTIVLSVCDTPEFCLVTKMIHALAILSGYDK--------------- 188
Query: 263 VRDEIS-WTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFM 321
EIS +I Y G + +F M R+ + TA+ISGL++NEL + LF
Sbjct: 189 ---EISVGNKLITSYFKCGCSVSGRGVFDGMSHRNVITLTAVISGLIENELHEDGLRLFS 245
Query: 322 EMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCG 381
MR V P + T+ A + I G+QIH +L K ES+L +E+ L+ MY+KCG
Sbjct: 246 LMRRGLVHPNSVTYLSALAACSGSQRIVEGQQIHALLWKYGIESELCIESALMDMYSKCG 305
Query: 382 VIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILS 441
I++A+ IF + D VS +++G + +G E ++ F ML++G ++ +L
Sbjct: 306 SIEDAWTIFESTTEVDEVSMTVILVGLAQNGSEEEAIQFFIRMLQAGVEIDANVVSAVLG 365
Query: 442 ACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVS--MINLLGRAGKIKEAEEFVLRLPFEP 499
+ G +L + V K + +V+ +IN+ + G + +++ R+P +
Sbjct: 366 VSFIDNSLGLGKQLHSL---VIKRKFSGNTFVNNGLINMYSKCGDLTDSQTVFRRMP-KR 421
Query: 500 DHRIWGALLGACG-FCEGNAEIAEHAAKRLLELDP--------LNAPAHVVLCN 544
++ W +++ A G A + + LE+ P L+A +HV L +
Sbjct: 422 NYVSWNSMIAAFARHGHGLAALKLYEEMTTLEVKPTDVTFLSLLHACSHVGLID 475
Score = 113 bits (282), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 105/468 (22%), Positives = 194/468 (41%), Gaps = 74/468 (15%)
Query: 6 HPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLF 65
H +LVV S ++ Y+K G + +A LF MP R+V+S N + GFL+N L
Sbjct: 86 HRNALVV-WNSLLSLYAKCGKLVDAIKLFDEMPMRDVISQNIVFYGFLRNRETESGFVLL 144
Query: 66 EEMPERNVVSWTAM--ICGLADAGRVCEARKLFEEMP-----ERNVVSWNSMVVGLIRNG 118
+ M + + + D C K+ + ++ + N ++ + G
Sbjct: 145 KRMLGSGGFDHATLTIVLSVCDTPEFCLVTKMIHALAILSGYDKEISVGNKLITSYFKCG 204
Query: 119 ELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEME----ERNVVTWTSMIS 174
R VF+ M +NVI+ A+I+G +E + + + LF M N VT+ S ++
Sbjct: 205 CSVSGRGVFDGMSHRNVITLTAVISGLIENELHEDGLRLFSLMRRGLVHPNSVTYLSALA 264
Query: 175 G-----------------------------------YCRAGEVEEGYCLFRRMPRKNVVS 199
Y + G +E+ + +F + VS
Sbjct: 265 ACSGSQRIVEGQQIHALLWKYGIESELCIESALMDMYSKCGSIEDAWTIFESTTEVDEVS 324
Query: 200 WTAMIGGFAWNGFHKESLLLFIEM--KGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNL 257
T ++ G A NG +E++ FI M G+ + N + S I+ + G+
Sbjct: 325 MTVILVGLAQNGSEEEAIQFFIRMLQAGVEIDANVVSAVLGVSFIDNSLGLGK------Q 378
Query: 258 FDTVPVRDEISWTS-----MIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNEL 312
++ ++ + S + +I+ Y G ++++ +F MP R+ V+W +MI+ ++
Sbjct: 379 LHSLVIKRKFSGNTFVNNGLINMYSKCGDLTDSQTVFRRMPKRNYVSWNSMIAAFARHGH 438
Query: 313 FVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGR-------QIHCVLMKTESES 365
+ A L+ EM V P + TF L A ID GR ++H + +TE +
Sbjct: 439 GLAALKLYEEMTTLEVKPTDVTFLSLLHACSHVGLIDKGRELLNEMKEVHGIEPRTEHYT 498
Query: 366 DLILENCLISMYAKCGVIDNAYNIFSNM-VSRDLVSWNSMVMGFSHHG 412
C+I M + G++ A + ++ + D W +++ S HG
Sbjct: 499 ------CIIDMLGRAGLLKEAKSFIDSLPLKPDCKIWQALLGACSFHG 540
Score = 70.1 bits (170), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 73/295 (24%), Positives = 125/295 (42%), Gaps = 52/295 (17%)
Query: 21 YSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNV---VSWT 77
YSK G I++A +F+ + + VS +L G QNG EA + F M + V +
Sbjct: 301 YSKCGSIEDAWTIFESTTEVDEVSMTVILVGLAQNGSEEEAIQFFIRMLQAGVEIDANVV 360
Query: 78 AMICGLADAGRVCEARKLFEEMPERNVVSWNSMV-VGLI----RNGELNEARKVFNSMPI 132
+ + G++ K + + S N+ V GLI + G+L +++ VF MP
Sbjct: 361 SAVLGVSFIDNSLGLGKQLHSLVIKRKFSGNTFVNNGLINMYSKCGDLTDSQTVFRRMPK 420
Query: 133 KNVISWNAMIAGYVECCMMGEAIVLFEEMEERNV----VTWTSMISGYCRAGEVEEGYCL 188
+N +SWN+MIA + A+ L+EEM V VT+ S++ G +++G L
Sbjct: 421 RNYVSWNSMIAAFARHGHGLAALKLYEEMTTLEVKPTDVTFLSLLHACSHVGLIDKGREL 480
Query: 189 FRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRF 248
M E+ GI + +I+ R
Sbjct: 481 LNEMK----------------------------EVHGI-----EPRTEHYTCIIDMLGRA 507
Query: 249 GRLEEAQNLFDTVPVRDEIS-WTSMI-----DGYLSVGQVSNAYYLFHNMPDRDA 297
G L+EA++ D++P++ + W +++ G VG+ + A LF PD +
Sbjct: 508 GLLKEAKSFIDSLPLKPDCKIWQALLGACSFHGDTEVGEYA-AEQLFQTAPDSSS 561
Score = 67.8 bits (164), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 80/149 (53%), Gaps = 13/149 (8%)
Query: 18 ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNV---- 73
I YSK G + +++ +F+ MP+RN VS+N+M++ F ++G A +L+EEM V
Sbjct: 399 INMYSKCGDLTDSQTVFRRMPKRNYVSWNSMIAAFARHGHGLAALKLYEEMTTLEVKPTD 458
Query: 74 VSWTAMICGLADAGRVCEARKLFEEMPERNVVS-----WNSMVVGLIRNGELNEARKVFN 128
V++ +++ + G + + R+L EM E + + + ++ L R G L EA+ +
Sbjct: 459 VTFLSLLHACSHVGLIDKGRELLNEMKEVHGIEPRTEHYTCIIDMLGRAGLLKEAKSFID 518
Query: 129 SMPIK-NVISWNAMIAGYVECCMMGEAIV 156
S+P+K + W A++ C G+ V
Sbjct: 519 SLPLKPDCKIWQALLGA---CSFHGDTEV 544
>sp|O22137|PP202_ARATH Pentatricopeptide repeat-containing protein At2g45350,
chloroplastic OS=Arabidopsis thaliana GN=CRR4 PE=3 SV=2
Length = 613
Score = 286 bits (732), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 159/482 (32%), Positives = 261/482 (54%), Gaps = 46/482 (9%)
Query: 111 VVGL-IRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFE--EMEERNVV 167
++GL ++ G L +R++F+ MP ++ +S+N+MI GYV+C ++ A LF+ ME +N++
Sbjct: 162 LIGLYLKCGCLGLSRQMFDRMPKRDSVSYNSMIDGYVKCGLIVSARELFDLMPMEMKNLI 221
Query: 168 TWTSMISGYCRAGE-VEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGI 226
+W SMISGY + + V+ LF MP K+++SW
Sbjct: 222 SWNSMISGYAQTSDGVDIASKLFADMPEKDLISW-------------------------- 255
Query: 227 CDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAY 286
NSMI+GY++ GR+E+A+ LFD +P RD ++W +MIDGY +G V +A
Sbjct: 256 ------------NSMIDGYVKHGRIEDAKGLFDVMPRRDVVTWATMIDGYAKLGFVHHAK 303
Query: 287 YLFHNMPDRDAVAWTAMISGLVQNELFVEATYLF--MEMRAHGVPPLNATFSVLFGAAGA 344
LF MP RD VA+ +M++G VQN+ +EA +F ME +H +P + T ++ A
Sbjct: 304 TLFDQMPHRDVVAYNSMMAGYVQNKYHMEALEIFSDMEKESHLLPD-DTTLVIVLPAIAQ 362
Query: 345 TANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSM 404
+ +H +++ + L LI MY+KCG I +A +F + ++ + WN+M
Sbjct: 363 LGRLSKAIDMHLYIVEKQFYLGGKLGVALIDMYSKCGSIQHAMLVFEGIENKSIDHWNAM 422
Query: 405 VMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYK 464
+ G + HGL + + P+ +TF+G+L+ACSH+GLV G F M +K
Sbjct: 423 IGGLAIHGLGESAFDMLLQIERLSLKPDDITFVGVLNACSHSGLVKEGLLCFELMRRKHK 482
Query: 465 IQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHA 524
I+P +HY M+++L R+G I+ A+ + +P EP+ IW L AC E E
Sbjct: 483 IEPRLQHYGCMVDILSRSGSIELAKNLIEEMPVEPNDVIWRTFLTACSH-HKEFETGELV 541
Query: 525 AKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQM 584
AK L+ N ++V+L N+YA+ G + ++R M + + K+PGCSW+ +G +
Sbjct: 542 AKHLILQAGYNPSSYVLLSNMYASFGMWKDVRRVRTMMKERKIEKIPGCSWIELDGRVHE 601
Query: 585 FL 586
F
Sbjct: 602 FF 603
Score = 181 bits (458), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 119/410 (29%), Positives = 219/410 (53%), Gaps = 18/410 (4%)
Query: 46 NAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMP--ERN 103
N ++ +L+ G L +R++F+ MP+R+ VS+ +MI G G + AR+LF+ MP +N
Sbjct: 160 NCLIGLYLKCGCLGLSRQMFDRMPKRDSVSYNSMIDGYVKCGLIVSARELFDLMPMEMKN 219
Query: 104 VVSWNSMVVGLIRNGE-LNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEME 162
++SWNSM+ G + + ++ A K+F MP K++ISWN+MI GYV+ + +A LF+ M
Sbjct: 220 LISWNSMISGYAQTSDGVDIASKLFADMPEKDLISWNSMIDGYVKHGRIEDAKGLFDVMP 279
Query: 163 ERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIE 222
R+VVTW +MI GY + G V LF +MP ++VV++ +M+ G+ N +H E+L +F +
Sbjct: 280 RRDVVTWATMIDGYAKLGFVHHAKTLFDQMPHRDVVAYNSMMAGYVQNKYHMEALEIFSD 339
Query: 223 MKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISW-----TSMIDGYL 277
M+ ++ + + ++ + GRL +A ++ + V + ++ID Y
Sbjct: 340 MEK--ESHLLPDDTTLVIVLPAIAQLGRLSKAIDMHLYI-VEKQFYLGGKLGVALIDMYS 396
Query: 278 SVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSV 337
G + +A +F + ++ W AMI GL + L A + +++ + P + TF
Sbjct: 397 KCGSIQHAMLVFEGIENKSIDHWNAMIGGLAIHGLGESAFDMLLQIERLSLKPDDITFVG 456
Query: 338 LFGAAGATANIDLGRQIHCV-LMKTESESDLILEN--CLISMYAKCGVIDNAYNIFSNM- 393
+ A + + G + C LM+ + + + L++ C++ + ++ G I+ A N+ M
Sbjct: 457 VLNACSHSGLVKEG--LLCFELMRRKHKIEPRLQHYGCMVDILSRSGSIELAKNLIEEMP 514
Query: 394 VSRDLVSWNSMVMGFSHHG-LANETLKVFESMLESGTHPNSVTFLGILSA 442
V + V W + + SHH L +L++G +P+S L + A
Sbjct: 515 VEPNDVIWRTFLTACSHHKEFETGELVAKHLILQAGYNPSSYVLLSNMYA 564
Score = 141 bits (356), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 91/344 (26%), Positives = 165/344 (47%), Gaps = 77/344 (22%)
Query: 7 PKSLVVHLTSSITKYSKRGFIDEAKALFQLMP--QRNVVSYNAMLSGFLQNGR-LSEARR 63
PK V S I Y K G I A+ LF LMP +N++S+N+M+SG+ Q + A +
Sbjct: 183 PKRDSVSYNSMIDGYVKCGLIVSARELFDLMPMEMKNLISWNSMISGYAQTSDGVDIASK 242
Query: 64 LFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEA 123
LF +MPE++++SW +MI G GR+ +A+ LF+ MP R+VV+W +M+ G + G ++ A
Sbjct: 243 LFADMPEKDLISWNSMIDGYVKHGRIEDAKGLFDVMPRRDVVTWATMIDGYAKLGFVHHA 302
Query: 124 RKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERN---------VVTW----- 169
+ +F+ MP ++V+++N+M+AGYV+ EA+ +F +ME+ + V+
Sbjct: 303 KTLFDQMPHRDVVAYNSMMAGYVQNKYHMEALEIFSDMEKESHLLPDDTTLVIVLPAIAQ 362
Query: 170 --------------------------TSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAM 203
++I Y + G ++ +F + K++ W AM
Sbjct: 363 LGRLSKAIDMHLYIVEKQFYLGGKLGVALIDMYSKCGSIQHAMLVFEGIENKSIDHWNAM 422
Query: 204 IGGFAWNGFHKESLLLFIEMK---------------------GICDNGNNC--------- 233
IGG A +G + + + ++++ G+ G C
Sbjct: 423 IGGLAIHGLGESAFDMLLQIERLSLKPDDITFVGVLNACSHSGLVKEGLLCFELMRRKHK 482
Query: 234 ---NVQSCNSMINGYIRFGRLEEAQNLFDTVPVR-DEISWTSMI 273
+Q M++ R G +E A+NL + +PV +++ W + +
Sbjct: 483 IEPRLQHYGCMVDILSRSGSIELAKNLIEEMPVEPNDVIWRTFL 526
Score = 70.1 bits (170), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 73/273 (26%), Positives = 123/273 (45%), Gaps = 23/273 (8%)
Query: 296 DAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIH 355
D W A+I + +A L M +GV + S++ A + G QIH
Sbjct: 85 DPFLWNAVIKSHSHGKDPRQALLLLCLMLENGVSVDKFSLSLVLKACSRLGFVKGGMQIH 144
Query: 356 CVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLAN 415
L KT SDL L+NCLI +Y KCG + + +F M RD VS+NSM+ G+ GL
Sbjct: 145 GFLKKTGLWSDLFLQNCLIGLYLKCGCLGLSRQMFDRMPKRDSVSYNSMIDGYVKCGLIV 204
Query: 416 ETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEH---- 471
++F+ M N +++ ++S + S G ++ + +F PE
Sbjct: 205 SARELFDLM--PMEMKNLISWNSMISGYAQT---SDGVDIASKLF-----ADMPEKDLIS 254
Query: 472 YVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIA-EHAAKRLLE 530
+ SMI+ + G+I++A+ +P D W ++ +G A++ H AK L +
Sbjct: 255 WNSMIDGYVKHGRIEDAKGLFDVMP-RRDVVTWATMI------DGYAKLGFVHHAKTLFD 307
Query: 531 LDP-LNAPAHVVLCNIYAASGRHVEEHKLRMDM 562
P + A+ + Y + H+E ++ DM
Sbjct: 308 QMPHRDVVAYNSMMAGYVQNKYHMEALEIFSDM 340
>sp|Q9LN01|PPR21_ARATH Pentatricopeptide repeat-containing protein At1g08070
OS=Arabidopsis thaliana GN=PCMP-H12 PE=2 SV=1
Length = 741
Score = 285 bits (730), Expect = 6e-76, Method: Compositional matrix adjust.
Identities = 188/559 (33%), Positives = 296/559 (52%), Gaps = 26/559 (4%)
Query: 58 LSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPE----RNVVSWNSMVVG 113
L A +F+ + E N++ W M G A + A KL+ M N ++ ++
Sbjct: 84 LPYAISVFKTIQEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFVLKS 143
Query: 114 LIRNGELNEARKVFNSMPIK-----NVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVT 168
++ E +++ + +K ++ ++I+ YV+ + +A +F++ R+VV+
Sbjct: 144 CAKSKAFKEGQQIHGHV-LKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHRDVVS 202
Query: 169 WTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGI-- 226
+T++I GY G +E LF +P K+VVSW AMI G+A G +KE+L LF +M
Sbjct: 203 YTALIKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNV 262
Query: 227 -CDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWT-SMIDGYLSVGQVSN 284
D V S + +G I GR + D + ++ID Y G++
Sbjct: 263 RPDESTMVTVVSACAQ-SGSIELGR--QVHLWIDDHGFGSNLKIVNALIDLYSKCGELET 319
Query: 285 AYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGA 344
A LF +P +D ++W +I G L+ EA LF EM G P + T + A
Sbjct: 320 ACGLFERLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAH 379
Query: 345 TANIDLGRQIHCVLMK-----TESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLV 399
ID+GR IH + K T + S L LI MYAKCG I+ A+ +F++++ + L
Sbjct: 380 LGAIDIGRWIHVYIDKRLKGVTNASS---LRTSLIDMYAKCGDIEAAHQVFNSILHKSLS 436
Query: 400 SWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAM 459
SWN+M+ GF+ HG A+ + +F M + G P+ +TF+G+LSACSH+G++ G +F M
Sbjct: 437 SWNAMIFGFAMHGRADASFDLFSRMRKIGIQPDDITFVGLLSACSHSGMLDLGRHIFRTM 496
Query: 460 FDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAE 519
YK+ P EHY MI+LLG +G KEAEE + + EPD IW +LL AC GN E
Sbjct: 497 TQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINMMEMEPDGVIWCSLLKACKM-HGNVE 555
Query: 520 IAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRN 579
+ E A+ L++++P N ++V+L NIYA++GR E K R + KG++KVPGCS + +
Sbjct: 556 LGESFAENLIKIEPENPGSYVLLSNIYASAGRWNEVAKTRALLNDKGMKKVPGCSSIEID 615
Query: 580 GGIQMFLSGDKIPAQVAEI 598
+ F+ GDK + EI
Sbjct: 616 SVVHEFIIGDKFHPRNREI 634
Score = 185 bits (469), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 116/413 (28%), Positives = 213/413 (51%), Gaps = 22/413 (5%)
Query: 96 FEEMPERNVVSWNSM----VVGLIRNGELNEARKVFNSMPIK-NVISWNAMIAGYVECCM 150
F +P + ++S+ + L+ N + ++ ++ ++ IK + + N ++ +E C+
Sbjct: 17 FHFLPSSSDPPYDSIRNHPSLSLLHNCKTLQSLRIIHAQMIKIGLHNTNYALSKLIEFCI 76
Query: 151 MGE-------AIVLFEEMEERNVVTWTSMISGYCRAGE----VEEGYCLFRRMPRKNVVS 199
+ AI +F+ ++E N++ W +M G+ + + ++ C+ N +
Sbjct: 77 LSPHFEGLPYAISVFKTIQEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYT 136
Query: 200 WTAMIGGFAWNGFHKESLLLFIEMKG-ICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLF 258
+ ++ A + KE ++ G + G + ++ S+I+ Y++ GRLE+A +F
Sbjct: 137 FPFVLKSCAKSKAFKEGQ----QIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVF 192
Query: 259 DTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATY 318
D P RD +S+T++I GY S G + NA LF +P +D V+W AMISG + + EA
Sbjct: 193 DKSPHRDVVSYTALIKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALE 252
Query: 319 LFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYA 378
LF +M V P +T + A + +I+LGRQ+H + S+L + N LI +Y+
Sbjct: 253 LFKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYS 312
Query: 379 KCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLG 438
KCG ++ A +F + +D++SWN+++ G++H L E L +F+ ML SG PN VT L
Sbjct: 313 KCGELETACGLFERLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLS 372
Query: 439 ILSACSHAGLVSRG-WELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEE 490
IL AC+H G + G W + + S+I++ + G I+ A +
Sbjct: 373 ILPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQ 425
Score = 169 bits (429), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 131/466 (28%), Positives = 215/466 (46%), Gaps = 62/466 (13%)
Query: 41 NVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMP 100
++ + +++S ++QNGRL +A ++F++ P R+VVS+TA+I G A G + A+KLF+E+P
Sbjct: 168 DLYVHTSLISMYVQNGRLEDAHKVFDKSPHRDVVSYTALIKGYASRGYIENAQKLFDEIP 227
Query: 101 ERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEE 160
++VVSWN+M+ G G EA ++F M NV + + V C +I L +
Sbjct: 228 VKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQ 287
Query: 161 ME--------ERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGF 212
+ N+ ++I Y + GE+E LF R+P K+V+SW +IGG+
Sbjct: 288 VHLWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFERLPYKDVISWNTLIGGYTHMNL 347
Query: 213 HKESLLLFIEMKGICDNGNNCNVQS----CNSMINGYIRFGRL------EEAQNLFDTVP 262
+KE+LLLF EM + N+ + S C + G I GR + + + +
Sbjct: 348 YKEALLLFQEMLRSGETPNDVTMLSILPACAHL--GAIDIGRWIHVYIDKRLKGVTNASS 405
Query: 263 VRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFME 322
+R TS+ID Y G + A+ +F+++ + +W AMI G + + LF
Sbjct: 406 LR-----TSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADASFDLFSR 460
Query: 323 MRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGV 382
MR G+ P + TF L A + +DLGR I + +
Sbjct: 461 MRKIGIQPDDITFVGLLSACSHSGMLDLGRHIFRTMTQDYK------------------- 501
Query: 383 IDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSA 442
++ L + M+ H GL E ++ M P+ V + +L A
Sbjct: 502 -----------MTPKLEHYGCMIDLLGHSGLFKEAEEMINMMEME---PDGVIWCSLLKA 547
Query: 443 CSHAGLVSRGWELFNAMFDVYKIQP-GPEHYVSMINLLGRAGKIKE 487
C G V G E F ++ KI+P P YV + N+ AG+ E
Sbjct: 548 CKMHGNVELG-ESFAE--NLIKIEPENPGSYVLLSNIYASAGRWNE 590
Score = 131 bits (330), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 91/297 (30%), Positives = 136/297 (45%), Gaps = 81/297 (27%)
Query: 10 LVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMP 69
L VH TS I+ Y + G +++A +F P R+VVSY A++ G+ G + A++LF+E+P
Sbjct: 169 LYVH-TSLISMYVQNGRLEDAHKVFDKSPHRDVVSYTALIKGYASRGYIENAQKLFDEIP 227
Query: 70 ERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLI-------------- 115
++VVSW AMI G A+ G EA +LF++M + NV S +V ++
Sbjct: 228 VKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQ 287
Query: 116 -------------------------RNGELNEARKVFNSMPIKNVISWNAMIAGYVECCM 150
+ GEL A +F +P K+VISWN +I GY +
Sbjct: 288 VHLWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFERLPYKDVISWNTLIGGYTHMNL 347
Query: 151 MGEAIVLFEEM----EERNVVT------------------W------------------- 169
EA++LF+EM E N VT W
Sbjct: 348 YKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLR 407
Query: 170 TSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGI 226
TS+I Y + G++E + +F + K++ SW AMI GFA +G S LF M+ I
Sbjct: 408 TSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADASFDLFSRMRKI 464
>sp|P93005|PP181_ARATH Pentatricopeptide repeat-containing protein At2g33680
OS=Arabidopsis thaliana GN=PCMP-E19 PE=3 SV=1
Length = 727
Score = 283 bits (724), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 185/652 (28%), Positives = 321/652 (49%), Gaps = 64/652 (9%)
Query: 4 RNHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEAR- 62
R + + H + Y+K G + +A ++F + ++VVS+N++++G+ QNG +S +
Sbjct: 42 RTGASTCIQHANVLVNFYAKCGKLAKAHSIFNAIICKDVVSWNSLITGYSQNGGISSSYT 101
Query: 63 --RLFEEMPERNVVSWTAMICGLADA---------GRVCEARKLFEEMPERNVVSWNSMV 111
+LF EM ++++ + G+ A GR +A L +M + ++ +
Sbjct: 102 VMQLFREMRAQDILPNAYTLAGIFKAESSLQSSTVGR--QAHALVVKMSSFGDIYVDTSL 159
Query: 112 VGLI-RNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLF----EEMEERN- 165
VG+ + G + + KVF MP +N +W+ M++GY + EAI +F E EE +
Sbjct: 160 VGMYCKAGLVEDGLKVFAYMPERNTYTWSTMVSGYATRGRVEEAIKVFNLFLREKEEGSD 219
Query: 166 ------------------------------------VVTWTSMISGYCRAGEVEEGYCLF 189
V ++++ Y + + E +F
Sbjct: 220 SDYVFTAVLSSLAATIYVGLGRQIHCITIKNGLLGFVALSNALVTMYSKCESLNEACKMF 279
Query: 190 RRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFG 249
+N ++W+AM+ G++ NG E++ LF M G + + ++N
Sbjct: 280 DSSGDRNSITWSAMVTGYSQNGESLEAVKLFSRM---FSAGIKPSEYTIVGVLNACSDIC 336
Query: 250 RLEEAQNLFDTVPV----RDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMIS 305
LEE + L + R + T+++D Y G +++A F + +RD WT++IS
Sbjct: 337 YLEEGKQLHSFLLKLGFERHLFATTALVDMYAKAGCLADARKGFDCLQERDVALWTSLIS 396
Query: 306 GLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESES 365
G VQN EA L+ M+ G+ P + T + + A + A ++LG+Q+H +K
Sbjct: 397 GYVQNSDNEEALILYRRMKTAGIIPNDPTMASVLKACSSLATLELGKQVHGHTIKHGFGL 456
Query: 366 DLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESML 425
++ + + L +MY+KCG +++ +F ++D+VSWN+M+ G SH+G +E L++FE ML
Sbjct: 457 EVPIGSALSTMYSKCGSLEDGNLVFRRTPNKDVVSWNAMISGLSHNGQGDEALELFEEML 516
Query: 426 ESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKI 485
G P+ VTF+ I+SACSH G V RGW FN M D + P +HY M++LL RAG++
Sbjct: 517 AEGMEPDDVTFVNIISACSHKGFVERGWFYFNMMSDQIGLDPKVDHYACMVDLLSRAGQL 576
Query: 486 KEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNI 545
KEA+EF+ + +W LL AC G E+ +A ++L+ L + +V L I
Sbjct: 577 KEAKEFIESANIDHGLCLWRILLSACK-NHGKCELGVYAGEKLMALGSRESSTYVQLSGI 635
Query: 546 YAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAE 597
Y A GR + ++ M GV K GCSW+ +F+ GD + + E
Sbjct: 636 YTALGRMRDVERVWKHMRANGVSKEVGCSWIELKNQYHVFVVGDTMHPMIEE 687
Score = 107 bits (267), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 63/233 (27%), Positives = 114/233 (48%), Gaps = 32/233 (13%)
Query: 226 ICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNA 285
I G + +Q N ++N Y + G+L +A ++F+ + +D +SW S+I GY G +S++
Sbjct: 40 IIRTGASTCIQHANVLVNFYAKCGKLAKAHSIFNAIICKDVVSWNSLITGYSQNGGISSS 99
Query: 286 YYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGAT 345
Y + LF EMRA + P T + +F A +
Sbjct: 100 YTVMQ----------------------------LFREMRAQDILPNAYTLAGIFKAESSL 131
Query: 346 ANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMV 405
+ +GRQ H +++K S D+ ++ L+ MY K G++++ +F+ M R+ +W++MV
Sbjct: 132 QSSTVGRQAHALVVKMSSFGDIYVDTSLVGMYCKAGLVEDGLKVFAYMPERNTYTWSTMV 191
Query: 406 MGFSHHGLANETLKVFESML---ESGTHPNSVTFLGILSACSHAGLVSRGWEL 455
G++ G E +KVF L E G+ + V F +LS+ + V G ++
Sbjct: 192 SGYATRGRVEEAIKVFNLFLREKEEGSDSDYV-FTAVLSSLAATIYVGLGRQI 243
Score = 70.5 bits (171), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 89/167 (53%), Gaps = 9/167 (5%)
Query: 347 NIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVM 406
N+ GR +H +++T + + + N L++ YAKCG + A++IF+ ++ +D+VSWNS++
Sbjct: 29 NLVAGRAVHGQIIRTGASTCIQHANVLVNFYAKCGKLAKAHSIFNAIICKDVVSWNSLIT 88
Query: 407 GFSHHGLANET---LKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVY 463
G+S +G + + +++F M PN+ T GI A S + G + A V
Sbjct: 89 GYSQNGGISSSYTVMQLFREMRAQDILPNAYTLAGIFKAESSLQSSTVGRQ---AHALVV 145
Query: 464 KIQPGPEHYV--SMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALL 508
K+ + YV S++ + +AG +++ + +P E + W ++
Sbjct: 146 KMSSFGDIYVDTSLVGMYCKAGLVEDGLKVFAYMP-ERNTYTWSTMV 191
>sp|Q9ZUW3|PP172_ARATH Pentatricopeptide repeat-containing protein At2g27610
OS=Arabidopsis thaliana GN=PCMP-H60 PE=2 SV=1
Length = 868
Score = 283 bits (723), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 188/627 (29%), Positives = 309/627 (49%), Gaps = 57/627 (9%)
Query: 15 TSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEM----PE 70
TS + Y K + + +F M +RNVV++ ++SG+ +N E LF M +
Sbjct: 132 TSLVDTYMKGSNFKDGRKVFDEMKERNVVTWTTLISGYARNSMNDEVLTLFMRMQNEGTQ 191
Query: 71 RNVVSWTAMICGLAD-----------------------------------AGRVCEARKL 95
N ++ A + LA+ G V +AR L
Sbjct: 192 PNSFTFAAALGVLAEEGVGGRGLQVHTVVVKNGLDKTIPVSNSLINLYLKCGNVRKARIL 251
Query: 96 FEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAI 155
F++ ++VV+WNSM+ G NG EA +F SM + V + A ++ C + +
Sbjct: 252 FDKTEVKSVVTWNSMISGYAANGLDLEALGMFYSMRLNYVRLSESSFASVIKLCANLKEL 311
Query: 156 VLFEEME----------ERNVVTWTSMISGYCRAGEVEEGYCLFRRMP-RKNVVSWTAMI 204
E++ ++N+ T+++ Y + + + LF+ + NVVSWTAMI
Sbjct: 312 RFTEQLHCSVVKYGFLFDQNI--RTALMVAYSKCTAMLDALRLFKEIGCVGNVVSWTAMI 369
Query: 205 GGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVR 264
GF N +E++ LF EMK G N + + ++ E + T R
Sbjct: 370 SGFLQNDGKEEAVDLFSEMK---RKGVRPNEFTYSVILTALPVISPSEVHAQVVKTNYER 426
Query: 265 DEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMR 324
T+++D Y+ +G+V A +F + D+D VAW+AM++G Q A +F E+
Sbjct: 427 SSTVGTALLDAYVKLGKVEEAAKVFSGIDDKDIVAWSAMLAGYAQTGETEAAIKMFGELT 486
Query: 325 AHGVPPLNATFSVLFGAAGAT-ANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVI 383
G+ P TFS + AT A++ G+Q H +K+ +S L + + L++MYAK G I
Sbjct: 487 KGGIKPNEFTFSSILNVCAATNASMGQGKQFHGFAIKSRLDSSLCVSSALLTMYAKKGNI 546
Query: 384 DNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSAC 443
++A +F +DLVSWNSM+ G++ HG A + L VF+ M + + VTF+G+ +AC
Sbjct: 547 ESAEEVFKRQREKDLVSWNSMISGYAQHGQAMKALDVFKEMKKRKVKMDGVTFIGVFAAC 606
Query: 444 SHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRI 503
+HAGLV G + F+ M KI P EH M++L RAG++++A + + +P I
Sbjct: 607 THAGLVEEGEKYFDIMVRDCKIAPTKEHNSCMVDLYSRAGQLEKAMKVIENMPNPAGSTI 666
Query: 504 WGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMG 563
W +L AC E+ AA++++ + P ++ A+V+L N+YA SG E K+R M
Sbjct: 667 WRTILAACR-VHKKTELGRLAAEKIIAMKPEDSAAYVLLSNMYAESGDWQERAKVRKLMN 725
Query: 564 LKGVRKVPGCSWLMRNGGIQMFLSGDK 590
+ V+K PG SW+ FL+GD+
Sbjct: 726 ERNVKKEPGYSWIEVKNKTYSFLAGDR 752
Score = 171 bits (432), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 153/601 (25%), Positives = 268/601 (44%), Gaps = 75/601 (12%)
Query: 30 AKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPE----------RNVVSWTAM 79
A LF P R+ SY ++L GF ++GR EA+RLF + +V+ +A
Sbjct: 46 AHNLFDKSPGRDRESYISLLFGFSRDGRTQEAKRLFLNIHRLGMEMDCSIFSSVLKVSAT 105
Query: 80 IC---------------GLADAGRVC--------------EARKLFEEMPERNVVSWNSM 110
+C G D V + RK+F+EM ERNVV+W ++
Sbjct: 106 LCDELFGRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRKVFDEMKERNVVTWTTL 165
Query: 111 VVGLIRNGELNEARKVF----NSMPIKNVISWNAMIAGYVECCMMGEAI----VLFEEME 162
+ G RN +E +F N N ++ A + E + G + V+ +
Sbjct: 166 ISGYARNSMNDEVLTLFMRMQNEGTQPNSFTFAAALGVLAEEGVGGRGLQVHTVVVKNGL 225
Query: 163 ERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIE 222
++ + S+I+ Y + G V + LF + K+VV+W +MI G+A NG E+L +F
Sbjct: 226 DKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANGLDLEALGMFYS 285
Query: 223 MKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVP----VRDEISWTSMIDGYLS 278
M+ N + S S+I L + L +V + D+ T+++ Y
Sbjct: 286 MRL---NYVRLSESSFASVIKLCANLKELRFTEQLHCSVVKYGFLFDQNIRTALMVAYSK 342
Query: 279 VGQVSNAYYLFHNMP-DRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSV 337
+ +A LF + + V+WTAMISG +QN+ EA LF EM+ GV P T+SV
Sbjct: 343 CTAMLDALRLFKEIGCVGNVVSWTAMISGFLQNDGKEEAVDLFSEMKRKGVRPNEFTYSV 402
Query: 338 LFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRD 397
+ A + ++H ++KT E + L+ Y K G ++ A +FS + +D
Sbjct: 403 ILTALPVIS----PSEVHAQVVKTNYERSSTVGTALLDAYVKLGKVEEAAKVFSGIDDKD 458
Query: 398 LVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFN 457
+V+W++M+ G++ G +K+F + + G PN TF IL+ C+ + F+
Sbjct: 459 IVAWSAMLAGYAQTGETEAAIKMFGELTKGGIKPNEFTFSSILNVCAATNASMGQGKQFH 518
Query: 458 AMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCE-G 516
++ +++ + + G I+ AEE V + E D W +++ G+ + G
Sbjct: 519 GFAIKSRLDSSLCVSSALLTMYAKKGNIESAEE-VFKRQREKDLVSWNSMIS--GYAQHG 575
Query: 517 NA----EIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRH--VEEHKLRMDMGLKGVRKV 570
A ++ + KR +++D V ++AA VEE + D+ ++ +
Sbjct: 576 QAMKALDVFKEMKKRKVKMDG------VTFIGVFAACTHAGLVEEGEKYFDIMVRDCKIA 629
Query: 571 P 571
P
Sbjct: 630 P 630
Score = 127 bits (318), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 104/447 (23%), Positives = 186/447 (41%), Gaps = 88/447 (19%)
Query: 72 NVVSWTAMIC-GLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVF--- 127
N V+ + C G + R+ A LF++ P R+ S+ S++ G R+G EA+++F
Sbjct: 25 NGVAQVRIYCFGTVSSSRLYNAHNLFDKSPGRDRESYISLLFGFSRDGRTQEAKRLFLNI 84
Query: 128 -------NSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAG 180
+ +V+ +A + + + + F +++ V TS++ Y +
Sbjct: 85 HRLGMEMDCSIFSSVLKVSATLCDELFGRQLHCQCIKFGFLDD--VSVGTSLVDTYMKGS 142
Query: 181 EVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKG--------------- 225
++G +F M +NVV+WT +I G+A N + E L LF+ M+
Sbjct: 143 NFKDGRKVFDEMKERNVVTWTTLISGYARNSMNDEVLTLFMRMQNEGTQPNSFTFAAALG 202
Query: 226 -----------------ICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEIS 268
+ NG + + NS+IN Y++ G + +A+ LFD V+ ++
Sbjct: 203 VLAEEGVGGRGLQVHTVVVKNGLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVT 262
Query: 269 WTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGV 328
W SMI GY + N L +EA +F MR + V
Sbjct: 263 WNSMISGYAA-------------------------------NGLDLEALGMFYSMRLNYV 291
Query: 329 PPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYN 388
++F+ + + Q+HC ++K D + L+ Y+KC + +A
Sbjct: 292 RLSESSFASVIKLCANLKELRFTEQLHCSVVKYGFLFDQNIRTALMVAYSKCTAMLDALR 351
Query: 389 IFSNM-VSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACS--- 444
+F + ++VSW +M+ GF + E + +F M G PN T+ IL+A
Sbjct: 352 LFKEIGCVGNVVSWTAMISGFLQNDGKEEAVDLFSEMKRKGVRPNEFTYSVILTALPVIS 411
Query: 445 ----HAGLVSRGWE----LFNAMFDVY 463
HA +V +E + A+ D Y
Sbjct: 412 PSEVHAQVVKTNYERSSTVGTALLDAY 438
Score = 95.9 bits (237), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 55/218 (25%), Positives = 106/218 (48%), Gaps = 9/218 (4%)
Query: 275 GYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNAT 334
G +S ++ NA+ LF P RD ++ +++ G ++ EA LF+ + G+ +
Sbjct: 36 GTVSSSRLYNAHNLFDKSPGRDRESYISLLFGFSRDGRTQEAKRLFLNIHRLGMEMDCSI 95
Query: 335 FSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMV 394
FS + + + GRQ+HC +K D+ + L+ Y K + +F M
Sbjct: 96 FSSVLKVSATLCDELFGRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRKVFDEMK 155
Query: 395 SRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWE 454
R++V+W +++ G++ + + +E L +F M GT PNS TF L + G+ RG +
Sbjct: 156 ERNVVTWTTLISGYARNSMNDEVLTLFMRMQNEGTQPNSFTFAAALGVLAEEGVGGRGLQ 215
Query: 455 LFNAMFDVYKIQPGPEHYV----SMINLLGRAGKIKEA 488
+ + ++ G + + S+INL + G +++A
Sbjct: 216 VHTVV-----VKNGLDKTIPVSNSLINLYLKCGNVRKA 248
>sp|Q9SI53|PP147_ARATH Pentatricopeptide repeat-containing protein At2g03880,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H44 PE=2
SV=1
Length = 630
Score = 282 bits (722), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 166/495 (33%), Positives = 270/495 (54%), Gaps = 27/495 (5%)
Query: 119 ELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIV--------LFEEMEERNVVTWT 170
+L A K +S+ + + +A + ++CC+ A+ L+ +
Sbjct: 41 DLPRAMKAMDSLQSHGLWADSATYSELIKCCISNRAVHEGNLICRHLYFNGHRPMMFLVN 100
Query: 171 SMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDN- 229
+I+ Y + + + + LF +MP++NV+SWT MI ++ H+++L L + M + DN
Sbjct: 101 VLINMYVKFNLLNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLM--LRDNV 158
Query: 230 -----GNNCNVQSCNSMIN-GYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVS 283
+ ++SCN M + + G ++E L V VR +++ID + +G+
Sbjct: 159 RPNVYTYSSVLRSCNGMSDVRMLHCGIIKEG--LESDVFVR-----SALIDVFAKLGEPE 211
Query: 284 NAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAG 343
+A +F M DA+ W ++I G QN A LF M+ G AT + + A
Sbjct: 212 DALSVFDEMVTGDAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACT 271
Query: 344 ATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNS 403
A ++LG Q H ++K + DLIL N L+ MY KCG +++A +F+ M RD+++W++
Sbjct: 272 GLALLELGMQAHVHIVKYDQ--DLILNNALVDMYCKCGSLEDALRVFNQMKERDVITWST 329
Query: 404 MVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVY 463
M+ G + +G + E LK+FE M SGT PN +T +G+L ACSHAGL+ GW F +M +Y
Sbjct: 330 MISGLAQNGYSQEALKLFERMKSSGTKPNYITIVGVLFACSHAGLLEDGWYYFRSMKKLY 389
Query: 464 KIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEH 523
I P EHY MI+LLG+AGK+ +A + + + EPD W LLGAC + N +AE+
Sbjct: 390 GIDPVREHYGCMIDLLGKAGKLDDAVKLLNEMECEPDAVTWRTLLGACRV-QRNMVLAEY 448
Query: 524 AAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQ 583
AAK+++ LDP +A + +L NIYA S + ++R M +G++K PGCSW+ N I
Sbjct: 449 AAKKVIALDPEDAGTYTLLSNIYANSQKWDSVEEIRTRMRDRGIKKEPGCSWIEVNKQIH 508
Query: 584 MFLSGDKIPAQVAEI 598
F+ GD Q+ E+
Sbjct: 509 AFIIGDNSHPQIVEV 523
Score = 107 bits (267), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 88/340 (25%), Positives = 146/340 (42%), Gaps = 47/340 (13%)
Query: 108 NSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLF--------- 158
N ++ ++ LN+A ++F+ MP +NVISW MI+ Y +C + +A+ L
Sbjct: 100 NVLINMYVKFNLLNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDNVR 159
Query: 159 ---------------------------EEMEERNVVTWTSMISGYCRAGEVEEGYCLFRR 191
+E E +V +++I + + GE E+ +F
Sbjct: 160 PNVYTYSSVLRSCNGMSDVRMLHCGIIKEGLESDVFVRSALIDVFAKLGEPEDALSVFDE 219
Query: 192 MPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRL 251
M + + W ++IGGFA N +L LF MK G + S++ L
Sbjct: 220 MVTGDAIVWNSIIGGFAQNSRSDVALELFKRMKRA---GFIAEQATLTSVLRACTGLALL 276
Query: 252 EEAQNLFDTVPVRDE--ISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQ 309
E + D+ I +++D Y G + +A +F+ M +RD + W+ MISGL Q
Sbjct: 277 ELGMQAHVHIVKYDQDLILNNALVDMYCKCGSLEDALRVFNQMKERDVITWSTMISGLAQ 336
Query: 310 NELFVEATYLFMEMRAHGVPPLNATF-SVLFGAAGATANIDLGRQIHCVLMKTESESDLI 368
N EA LF M++ G P T VLF + A D MK D +
Sbjct: 337 NGYSQEALKLFERMKSSGTKPNYITIVGVLFACSHAGLLEDGWYYFRS--MKKLYGIDPV 394
Query: 369 LEN--CLISMYAKCGVIDNAYNIFSNM-VSRDLVSWNSMV 405
E+ C+I + K G +D+A + + M D V+W +++
Sbjct: 395 REHYGCMIDLLGKAGKLDDAVKLLNEMECEPDAVTWRTLL 434
Score = 104 bits (260), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 88/353 (24%), Positives = 153/353 (43%), Gaps = 59/353 (16%)
Query: 18 ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQ----------------------- 54
I Y K +++A LF MPQRNV+S+ M+S + +
Sbjct: 103 INMYVKFNLLNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDNVRPNV 162
Query: 55 ----------NGRLSEARRL----FEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMP 100
NG +S+ R L +E E +V +A+I A G +A +F+EM
Sbjct: 163 YTYSSVLRSCNG-MSDVRMLHCGIIKEGLESDVFVRSALIDVFAKLGEPEDALSVFDEMV 221
Query: 101 ERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEE 160
+ + WNS++ G +N + A ++F M I+ A + + C G A++
Sbjct: 222 TGDAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRAC-TGLALLELGM 280
Query: 161 MEERNVVTW-------TSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFH 213
++V + +++ YC+ G +E+ +F +M ++V++W+ MI G A NG+
Sbjct: 281 QAHVHIVKYDQDLILNNALVDMYCKCGSLEDALRVFNQMKERDVITWSTMISGLAQNGYS 340
Query: 214 KESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEA-------QNLFDTVPVRDE 266
+E+L LF MK +G N + ++ G LE+ + L+ PVR+
Sbjct: 341 QEALKLFERMKS---SGTKPNYITIVGVLFACSHAGLLEDGWYYFRSMKKLYGIDPVREH 397
Query: 267 ISWTSMIDGYLSVGQVSNAYYLFHNMP-DRDAVAWTAMISGLVQNELFVEATY 318
+ MID G++ +A L + M + DAV W ++ V A Y
Sbjct: 398 --YGCMIDLLGKAGKLDDAVKLLNEMECEPDAVTWRTLLGACRVQRNMVLAEY 448
>sp|Q5G1T1|PP272_ARATH Pentatricopeptide repeat-containing protein At3g49170,
chloroplastic OS=Arabidopsis thaliana GN=EMB2261 PE=2
SV=1
Length = 850
Score = 282 bits (722), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 198/651 (30%), Positives = 327/651 (50%), Gaps = 65/651 (9%)
Query: 7 PKSLVVHLTSSITKYSKRGFIDEAKALFQLMP---QRNVVSYNAMLSGFLQNGRLSEARR 63
P S++ + S I+ YSK G +A+ +F+ M +R+VVS++AM++ + NGR +A +
Sbjct: 95 PDSVLYN--SLISLYSKSGDSAKAEDVFETMRRFGKRDVVSWSAMMACYGNNGRELDAIK 152
Query: 64 LFEEMPERNVVS----WTAMI--CGLAD---AGRVC------------------------ 90
+F E E +V +TA+I C +D GRV
Sbjct: 153 VFVEFLELGLVPNDYCYTAVIRACSNSDFVGVGRVTLGFLMKTGHFESDVCVGCSLIDMF 212
Query: 91 --------EARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMI 142
A K+F++M E NVV+W M+ ++ G EA + F M + S +
Sbjct: 213 VKGENSFENAYKVFDKMSELNVVTWTLMITRCMQMGFPREAIRFFLDMVLSGFESDKFTL 272
Query: 143 AGYVECCMMGEAIVLFEEMEERNVVTW------TSMISGYCRA---GEVEEGYCLFRRMP 193
+ C E + L +++ + + S++ Y + G V++ +F RM
Sbjct: 273 SSVFSACAELENLSLGKQLHSWAIRSGLVDDVECSLVDMYAKCSADGSVDDCRKVFDRME 332
Query: 194 RKNVVSWTAMIGGFAWN-GFHKESLLLFIEM--KGICDNGN---NCNVQSCNSMINGYIR 247
+V+SWTA+I G+ N E++ LF EM +G + + + ++C ++ + R
Sbjct: 333 DHSVMSWTALITGYMKNCNLATEAINLFSEMITQGHVEPNHFTFSSAFKACGNLSDP--R 390
Query: 248 FGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGL 307
G+ Q + ++ S+I ++ ++ +A F ++ +++ V++ + G
Sbjct: 391 VGKQVLGQAFKRGLASNSSVA-NSVISMFVKSDRMEDAQRAFESLSEKNLVSYNTFLDGT 449
Query: 308 VQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDL 367
+N F +A L E+ + TF+ L +I G QIH ++K +
Sbjct: 450 CRNLNFEQAFKLLSEITERELGVSAFTFASLLSGVANVGSIRKGEQIHSQVVKLGLSCNQ 509
Query: 368 ILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLES 427
+ N LISMY+KCG ID A +F+ M +R+++SW SM+ GF+ HG A L+ F M+E
Sbjct: 510 PVCNALISMYSKCGSIDTASRVFNFMENRNVISWTSMITGFAKHGFAIRVLETFNQMIEE 569
Query: 428 GTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKE 487
G PN VT++ ILSACSH GLVS GW FN+M++ +KI+P EHY M++LL RAG + +
Sbjct: 570 GVKPNEVTYVAILSACSHVGLVSEGWRHFNSMYEDHKIKPKMEHYACMVDLLCRAGLLTD 629
Query: 488 AEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYA 547
A EF+ +PF+ D +W LGAC N E+ + AA+++LELDP A++ L NIYA
Sbjct: 630 AFEFINTMPFQADVLVWRTFLGACRV-HSNTELGKLAARKILELDPNEPAAYIQLSNIYA 688
Query: 548 ASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
+G+ E ++R M + + K GCSW+ I F GD +I
Sbjct: 689 CAGKWEESTEMRRKMKERNLVKEGGCSWIEVGDKIHKFYVGDTAHPNAHQI 739
Score = 112 bits (279), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 81/294 (27%), Positives = 143/294 (48%), Gaps = 17/294 (5%)
Query: 163 ERNVVTWTSMISGYCRAGE---VEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLL 219
E + V + S+IS Y ++G+ E+ + RR +++VVSW+AM+ + NG +++ +
Sbjct: 94 EPDSVLYNSLISLYSKSGDSAKAEDVFETMRRFGKRDVVSWSAMMACYGNNGRELDAIKV 153
Query: 220 FIEMK--GICDNGN--NCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDG 275
F+E G+ N +++C++ + ++ GR+ + D S+ID
Sbjct: 154 FVEFLELGLVPNDYCYTAVIRACSN--SDFVGVGRVTLGFLMKTGHFESDVCVGCSLIDM 211
Query: 276 YLS-VGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNAT 334
++ NAY +F M + + V WT MI+ +Q EA F++M G T
Sbjct: 212 FVKGENSFENAYKVFDKMSELNVVTWTLMITRCMQMGFPREAIRFFLDMVLSGFESDKFT 271
Query: 335 FSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKC---GVIDNAYNIFS 391
S +F A N+ LG+Q+H +++ D +E L+ MYAKC G +D+ +F
Sbjct: 272 LSSVFSACAELENLSLGKQLHSWAIRSGLVDD--VECSLVDMYAKCSADGSVDDCRKVFD 329
Query: 392 NMVSRDLVSWNSMVMGFSHH-GLANETLKVFESMLESG-THPNSVTFLGILSAC 443
M ++SW +++ G+ + LA E + +F M+ G PN TF AC
Sbjct: 330 RMEDHSVMSWTALITGYMKNCNLATEAINLFSEMITQGHVEPNHFTFSSAFKAC 383
Score = 86.7 bits (213), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 88/356 (24%), Positives = 151/356 (42%), Gaps = 19/356 (5%)
Query: 246 IRFGRLEEAQNL-FDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMP---DRDAVAWT 301
R G+L A+ + FD P D + + S+I Y G + A +F M RD V+W+
Sbjct: 78 FRLGKLVHARLIEFDIEP--DSVLYNSLISLYSKSGDSAKAEDVFETMRRFGKRDVVSWS 135
Query: 302 AMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKT 361
AM++ N ++A +F+E G+ P + ++ + A + + +GR LMKT
Sbjct: 136 AMMACYGNNGRELDAIKVFVEFLELGLVPNDYCYTAVIRACSNSDFVGVGRVTLGFLMKT 195
Query: 362 -ESESDLILENCLISMYAKC-GVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLK 419
ESD+ + LI M+ K +NAY +F M ++V+W M+ G E ++
Sbjct: 196 GHFESDVCVGCSLIDMFVKGENSFENAYKVFDKMSELNVVTWTLMITRCMQMGFPREAIR 255
Query: 420 VFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLL 479
F M+ SG + T + SAC+ +S G +L + + V M
Sbjct: 256 FFLDMVLSGFESDKFTLSSVFSACAELENLSLGKQLHSWAIRSGLVDDVECSLVDMYAKC 315
Query: 480 GRAGKIKEAEEFVLRLPFEPDHRI--WGALLGACGFCEGNAEIAEHAAKRLLELDPLN-- 535
G + + + R+ DH + W AL+ G+ + N +A A E+
Sbjct: 316 SADGSVDDCRKVFDRM---EDHSVMSWTALI--TGYMK-NCNLATEAINLFSEMITQGHV 369
Query: 536 APAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKI 591
P H + + A G + + +G R + S + N I MF+ D++
Sbjct: 370 EPNHFTFSSAFKACGNLSDPRVGKQVLGQAFKRGLASNSSVA-NSVISMFVKSDRM 424
Score = 78.2 bits (191), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 74/134 (55%), Gaps = 4/134 (2%)
Query: 323 MRAHGVPPLNA-TFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCG 381
M G+ P+++ TFS L + + LG+ +H L++ + E D +L N LIS+Y+K G
Sbjct: 52 MARDGIRPMDSVTFSSLLKSCIRARDFRLGKLVHARLIEFDIEPDSVLYNSLISLYSKSG 111
Query: 382 VIDNAYNIFSNMV---SRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLG 438
A ++F M RD+VSW++M+ + ++G + +KVF LE G PN +
Sbjct: 112 DSAKAEDVFETMRRFGKRDVVSWSAMMACYGNNGRELDAIKVFVEFLELGLVPNDYCYTA 171
Query: 439 ILSACSHAGLVSRG 452
++ ACS++ V G
Sbjct: 172 VIRACSNSDFVGVG 185
>sp|Q9SS60|PP210_ARATH Pentatricopeptide repeat-containing protein At3g03580
OS=Arabidopsis thaliana GN=PCMP-H23 PE=2 SV=1
Length = 882
Score = 281 bits (718), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 183/632 (28%), Positives = 311/632 (49%), Gaps = 81/632 (12%)
Query: 46 NAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEM------ 99
NA++ + + G L+ AR++F+EMP R++VSW ++I G + G EA +++ E+
Sbjct: 145 NALVDMYSRMGLLTRARQVFDEMPVRDLVSWNSLISGYSSHGYYEEALEIYHELKNSWIV 204
Query: 100 PERNVVS------WNSMVV----GL-----------------------IRNGELNEARKV 126
P+ VS N +VV GL ++ +AR+V
Sbjct: 205 PDSFTVSSVLPAFGNLLVVKQGQGLHGFALKSGVNSVVVVNNGLVAMYLKFRRPTDARRV 264
Query: 127 FNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEER---NVVTWTS------------ 171
F+ M +++ +S+N MI GY++ M+ E++ +F E ++ +++T +S
Sbjct: 265 FDEMDVRDSVSYNTMICGYLKLEMVEESVRMFLENLDQFKPDLLTVSSVLRACGHLRDLS 324
Query: 172 -----------------------MISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFA 208
+I Y + G++ +F M K+ VSW ++I G+
Sbjct: 325 LAKYIYNYMLKAGFVLESTVRNILIDVYAKCGDMITARDVFNSMECKDTVSWNSIISGYI 384
Query: 209 WNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMIN--GYIRFGRLEEAQNLFDTVPVRDE 266
+G E++ LF M + + ++ S+ ++FG+ + + + +
Sbjct: 385 QSGDLMEAMKLFKMMMIMEEQADHITYLMLISVSTRLADLKFGKGLHSNGIKSGICIDLS 444
Query: 267 ISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAH 326
+S ++ID Y G+V ++ +F +M D V W +IS V+ F + +MR
Sbjct: 445 VS-NALIDMYAKCGEVGDSLKIFSSMGTGDTVTWNTVISACVRFGDFATGLQVTTQMRKS 503
Query: 327 GVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNA 386
V P ATF V + A LG++IHC L++ ES+L + N LI MY+KCG ++N+
Sbjct: 504 EVVPDMATFLVTLPMCASLAAKRLGKEIHCCLLRFGYESELQIGNALIEMYSKCGCLENS 563
Query: 387 YNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHA 446
+F M RD+V+W M+ + +G + L+ F M +SG P+SV F+ I+ ACSH+
Sbjct: 564 SRVFERMSRRDVVTWTGMIYAYGMYGEGEKALETFADMEKSGIVPDSVVFIAIIYACSHS 623
Query: 447 GLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGA 506
GLV G F M YKI P EHY +++LL R+ KI +AEEF+ +P +PD IW +
Sbjct: 624 GLVDEGLACFEKMKTHYKIDPMIEHYACVVDLLSRSQKISKAEEFIQAMPIKPDASIWAS 683
Query: 507 LLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKG 566
+L AC G+ E AE ++R++EL+P + ++ N YAA + + +R + K
Sbjct: 684 VLRACR-TSGDMETAERVSRRIIELNPDDPGYSILASNAYAALRKWDKVSLIRKSLKDKH 742
Query: 567 VRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
+ K PG SW+ + +F SGD Q I
Sbjct: 743 ITKNPGYSWIEVGKNVHVFSSGDDSAPQSEAI 774
Score = 137 bits (344), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 130/516 (25%), Positives = 240/516 (46%), Gaps = 77/516 (14%)
Query: 18 ITKYSKRGFIDEAKALF---QLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNV- 73
I KYS F + A +L ++ P +NV +N+++ F +NG EA + ++ E V
Sbjct: 46 IDKYSH--FREPASSLSVFRRVSPAKNVYLWNSIIRAFSKNGLFPEALEFYGKLRESKVS 103
Query: 74 ---VSWTAMI---CGLADA--GRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARK 125
++ ++I GL DA G + ++ + E ++ N++V R G L AR+
Sbjct: 104 PDKYTFPSVIKACAGLFDAEMGDLV-YEQILDMGFESDLFVGNALVDMYSRMGLLTRARQ 162
Query: 126 VFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVV----TWTSMISGYCRAGE 181
VF+ MP+++++SWN++I+GY EA+ ++ E++ +V T +S++ +
Sbjct: 163 VFDEMPVRDLVSWNSLISGYSSHGYYEEALEIYHELKNSWIVPDSFTVSSVLPAFGNLLV 222
Query: 182 VEEG-------------------------YCLFRR----------MPRKNVVSWTAMIGG 206
V++G Y FRR M ++ VS+ MI G
Sbjct: 223 VKQGQGLHGFALKSGVNSVVVVNNGLVAMYLKFRRPTDARRVFDEMDVRDSVSYNTMICG 282
Query: 207 FAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVP---- 262
+ +ES+ +F+E + ++ + +S++ L A+ +++ +
Sbjct: 283 YLKLEMVEESVRMFLENL----DQFKPDLLTVSSVLRACGHLRDLSLAKYIYNYMLKAGF 338
Query: 263 VRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFME 322
V + +ID Y G + A +F++M +D V+W ++ISG +Q+ +EA LF
Sbjct: 339 VLESTVRNILIDVYAKCGDMITARDVFNSMECKDTVSWNSIISGYIQSGDLMEAMKLFKM 398
Query: 323 MRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGV 382
M + T+ +L + A++ G+ +H +K+ DL + N LI MYAKCG
Sbjct: 399 MMIMEEQADHITYLMLISVSTRLADLKFGKGLHSNGIKSGICIDLSVSNALIDMYAKCGE 458
Query: 383 IDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSA 442
+ ++ IFS+M + D V+WN+++ G L+V M +S P+ TFL L
Sbjct: 459 VGDSLKIFSSMGTGDTVTWNTVISACVRFGDFATGLQVTTQMRKSEVVPDMATFLVTLPM 518
Query: 443 CS-----------HAGLVSRGWE----LFNAMFDVY 463
C+ H L+ G+E + NA+ ++Y
Sbjct: 519 CASLAAKRLGKEIHCCLLRFGYESELQIGNALIEMY 554
Score = 101 bits (252), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 76/294 (25%), Positives = 142/294 (48%), Gaps = 9/294 (3%)
Query: 172 MISGYCRAGEVEEGYCLFRRM-PRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNG 230
+I Y E +FRR+ P KNV W ++I F+ NG E+L + +++ +
Sbjct: 45 LIDKYSHFREPASSLSVFRRVSPAKNVYLWNSIIRAFSKNGLFPEALEFYGKLRESKVSP 104
Query: 231 NNCN----VQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAY 286
+ +++C + + G L Q + D D +++D Y +G ++ A
Sbjct: 105 DKYTFPSVIKACAGLFDA--EMGDLVYEQ-ILDMGFESDLFVGNALVDMYSRMGLLTRAR 161
Query: 287 YLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATA 346
+F MP RD V+W ++ISG + + EA ++ E++ + P + T S + A G
Sbjct: 162 QVFDEMPVRDLVSWNSLISGYSSHGYYEEALEIYHELKNSWIVPDSFTVSSVLPAFGNLL 221
Query: 347 NIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVM 406
+ G+ +H +K+ S +++ N L++MY K +A +F M RD VS+N+M+
Sbjct: 222 VVKQGQGLHGFALKSGVNSVVVVNNGLVAMYLKFRRPTDARRVFDEMDVRDSVSYNTMIC 281
Query: 407 GFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMF 460
G+ + E++++F L+ P+ +T +L AC H +S ++N M
Sbjct: 282 GYLKLEMVEESVRMFLENLDQ-FKPDLLTVSSVLRACGHLRDLSLAKYIYNYML 334
Score = 100 bits (250), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 98/389 (25%), Positives = 154/389 (39%), Gaps = 100/389 (25%)
Query: 29 EAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEE-----MPERNVVSWTAMICG- 82
+A+ +F M R+ VSYN M+ G+L+ + E+ R+F E P+ VS CG
Sbjct: 260 DARRVFDEMDVRDSVSYNTMICGYLKLEMVEESVRMFLENLDQFKPDLLTVSSVLRACGH 319
Query: 83 --------------------------------LADAGRVCEARKLFEEMPERNVVSWNSM 110
A G + AR +F M ++ VSWNS+
Sbjct: 320 LRDLSLAKYIYNYMLKAGFVLESTVRNILIDVYAKCGDMITARDVFNSMECKDTVSWNSI 379
Query: 111 VVGLIRNGELNEARKVFNSMPI----KNVISW---------------------------- 138
+ G I++G+L EA K+F M I + I++
Sbjct: 380 ISGYIQSGDLMEAMKLFKMMMIMEEQADHITYLMLISVSTRLADLKFGKGLHSNGIKSGI 439
Query: 139 -------NAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRR 191
NA+I Y +C +G+++ +F M + VTW ++IS R G+ G + +
Sbjct: 440 CIDLSVSNALIDMYAKCGEVGDSLKIFSSMGTGDTVTWNTVISACVRFGDFATGLQVTTQ 499
Query: 192 MPRKNVVSWTA-------MIGGFAWNGFHKE---SLLLFIEMKGICDNGNNCNVQSCNSM 241
M + VV A M A KE LL F G +Q N++
Sbjct: 500 MRKSEVVPDMATFLVTLPMCASLAAKRLGKEIHCCLLRF---------GYESELQIGNAL 550
Query: 242 INGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDR----DA 297
I Y + G LE + +F+ + RD ++WT MI Y G+ A F +M D+
Sbjct: 551 IEMYSKCGCLENSSRVFERMSRRDVVTWTGMIYAYGMYGEGEKALETFADMEKSGIVPDS 610
Query: 298 VAWTAMISGLVQNELFVEATYLFMEMRAH 326
V + A+I + L E F +M+ H
Sbjct: 611 VVFIAIIYACSHSGLVDEGLACFEKMKTH 639
>sp|P0C899|PP271_ARATH Putative pentatricopeptide repeat-containing protein At3g49142
OS=Arabidopsis thaliana GN=PCMP-H77 PE=3 SV=1
Length = 686
Score = 279 bits (713), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 181/582 (31%), Positives = 282/582 (48%), Gaps = 56/582 (9%)
Query: 33 LFQLMPQRNVVSYNAMLSGF--LQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVC 90
L Q PQ V +L + ++ R +R + E++ N ++ A V
Sbjct: 33 LDQKSPQETVFLLGQVLDTYPDIRTLRTVHSRIILEDL-RCNSSLGVKLMRAYASLKDVA 91
Query: 91 EARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCM 150
ARK+F+E+PERNV+ N M+ + NG E KVF +M NV + ++ C
Sbjct: 92 SARKVFDEIPERNVIIINVMIRSYVNNGFYGEGVKVFGTMCGCNVRPDHYTFPCVLKACS 151
Query: 151 MGEAIVLFEEME--------ERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTA 202
IV+ ++ + ++S Y + G + E + M R++VVSW
Sbjct: 152 CSGTIVIGRKIHGSATKVGLSSTLFVGNGLVSMYGKCGFLSEARLVLDEMSRRDVVSW-- 209
Query: 203 MIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNL---FD 259
NS++ GY + R ++A + +
Sbjct: 210 ------------------------------------NSLVVGYAQNQRFDDALEVCREME 233
Query: 260 TVPVRDEISWTSMIDGYLSVGQVSNAYY---LFHNMPDRDAVAWTAMISGLVQNELFVEA 316
+V + + + + +S N Y +F M + V+W MI ++N + VEA
Sbjct: 234 SVKISHDAGTMASLLPAVSNTTTENVMYVKDMFFKMGKKSLVSWNVMIGVYMKNAMPVEA 293
Query: 317 TYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISM 376
L+ M A G P + + + A G T+ + LG++IH + + + +L+LEN LI M
Sbjct: 294 VELYSRMEADGFEPDAVSITSVLPACGDTSALSLGKKIHGYIERKKLIPNLLLENALIDM 353
Query: 377 YAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTF 436
YAKCG ++ A ++F NM SRD+VSW +M+ + G + + +F + +SG P+S+ F
Sbjct: 354 YAKCGCLEKARDVFENMKSRDVVSWTAMISAYGFSGRGCDAVALFSKLQDSGLVPDSIAF 413
Query: 437 LGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLP 496
+ L+ACSHAGL+ G F M D YKI P EH M++LLGRAGK+KEA F+ +
Sbjct: 414 VTTLAACSHAGLLEEGRSCFKLMTDHYKITPRLEHLACMVDLLGRAGKVKEAYRFIQDMS 473
Query: 497 FEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEH 556
EP+ R+WGALLGAC + +I AA +L +L P + +V+L NIYA +GR E
Sbjct: 474 MEPNERVWGALLGACRV-HSDTDIGLLAADKLFQLAPEQSGYYVLLSNIYAKAGRWEEVT 532
Query: 557 KLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
+R M KG++K PG S + N I FL GD+ Q EI
Sbjct: 533 NIRNIMKSKGLKKNPGASNVEVNRIIHTFLVGDRSHPQSDEI 574
Score = 112 bits (280), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 111/495 (22%), Positives = 201/495 (40%), Gaps = 76/495 (15%)
Query: 21 YSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNV----VSW 76
Y+ + A+ +F +P+RNV+ N M+ ++ NG E ++F M NV ++
Sbjct: 84 YASLKDVASARKVFDEIPERNVIIINVMIRSYVNNGFYGEGVKVFGTMCGCNVRPDHYTF 143
Query: 77 TAMICGLADAGRVCEARKLFEEMPERNVVSW----NSMVVGLIRNGELNEARKVFNSMPI 132
++ + +G + RK+ + + S N +V + G L+EAR V + M
Sbjct: 144 PCVLKACSCSGTIVIGRKIHGSATKVGLSSTLFVGNGLVSMYGKCGFLSEARLVLDEMSR 203
Query: 133 KNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVV----TWTSMISGYCRAGEVEEGYC- 187
++V+SWN+++ GY + +A+ + EME + T S++ Y
Sbjct: 204 RDVVSWNSLVVGYAQNQRFDDALEVCREMESVKISHDAGTMASLLPAVSNTTTENVMYVK 263
Query: 188 -LFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKG------------ICDNGNNCN 234
+F +M +K++VSW MIG + N E++ L+ M+ + + +
Sbjct: 264 DMFFKMGKKSLVSWNVMIGVYMKNAMPVEAVELYSRMEADGFEPDAVSITSVLPACGDTS 323
Query: 235 VQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPD 294
S I+GYI +L + + + ++ID Y G + A +F NM
Sbjct: 324 ALSLGKKIHGYIERKKL-----------IPNLLLENALIDMYAKCGCLEKARDVFENMKS 372
Query: 295 RDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQI 354
RD V+WTAMIS + +A LF +++ G+ P + F A ++ GR
Sbjct: 373 RDVVSWTAMISAYGFSGRGCDAVALFSKLQDSGLVPDSIAFVTTLAACSHAGLLEEGRSC 432
Query: 355 HCVLMKTESESDLILEN--CLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHG 412
LM + LE+ C++ + + G + AY +M
Sbjct: 433 F-KLMTDHYKITPRLEHLACMVDLLGRAGKVKEAYRFIQDM------------------- 472
Query: 413 LANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHY 472
PN + +L AC G + +F + Q G +Y
Sbjct: 473 ---------------SMEPNERVWGALLGACRVHSDTDIGLLAADKLFQLAPEQSG--YY 515
Query: 473 VSMINLLGRAGKIKE 487
V + N+ +AG+ +E
Sbjct: 516 VLLSNIYAKAGRWEE 530
Score = 90.9 bits (224), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 74/307 (24%), Positives = 145/307 (47%), Gaps = 23/307 (7%)
Query: 18 ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWT 77
++ Y K GF+ EA+ + M +R+VVS+N+++ G+ QN R +A + EM +
Sbjct: 182 VSMYGKCGFLSEARLVLDEMSRRDVVSWNSLVVGYAQNQRFDDALEVCREMESVKISHDA 241
Query: 78 AMICGLADA------GRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMP 131
+ L A V + +F +M ++++VSWN M+ ++N EA ++++ M
Sbjct: 242 GTMASLLPAVSNTTTENVMYVKDMFFKMGKKSLVSWNVMIGVYMKNAMPVEAVELYSRME 301
Query: 132 IKNVISWNAMIAGYVECCMMGEAIVLFEEME---ER-----NVVTWTSMISGYCRAGEVE 183
I + C A+ L +++ ER N++ ++I Y + G +E
Sbjct: 302 ADGFEPDAVSITSVLPACGDTSALSLGKKIHGYIERKKLIPNLLLENALIDMYAKCGCLE 361
Query: 184 EGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMIN 243
+ +F M ++VVSWTAMI + ++G +++ LF +++ D+G + + + +
Sbjct: 362 KARDVFENMKSRDVVSWTAMISAYGFSGRGCDAVALFSKLQ---DSGLVPDSIAFVTTLA 418
Query: 244 GYIRFGRLEEAQNLFDTVPVRDEIS-----WTSMIDGYLSVGQVSNAYYLFHNMP-DRDA 297
G LEE ++ F + +I+ M+D G+V AY +M + +
Sbjct: 419 ACSHAGLLEEGRSCFKLMTDHYKITPRLEHLACMVDLLGRAGKVKEAYRFIQDMSMEPNE 478
Query: 298 VAWTAMI 304
W A++
Sbjct: 479 RVWGALL 485
>sp|Q9LS72|PP261_ARATH Pentatricopeptide repeat-containing protein At3g29230
OS=Arabidopsis thaliana GN=PCMP-E27 PE=2 SV=1
Length = 600
Score = 278 bits (712), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 172/542 (31%), Positives = 278/542 (51%), Gaps = 51/542 (9%)
Query: 61 ARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIR--NG 118
A R+F ++ E NV ++I A + +A +F EM + + N L++ +G
Sbjct: 70 AVRVFNQVQEPNVHLCNSLIRAHAQNSQPYQAFFVFSEMQRFGLFADNFTYPFLLKACSG 129
Query: 119 E--LNEARKVFNSMPI----KNVISWNAMIAGYVECCMMG--EAIVLFEEMEERNVVTWT 170
+ L + + N + ++ NA+I Y C +G +A+ LFE+M ER+ V+W
Sbjct: 130 QSWLPVVKMMHNHIEKLGLSSDIYVPNALIDCYSRCGGLGVRDAMKLFEKMSERDTVSWN 189
Query: 171 SMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNG 230
SM+ G +AGE+ + LF MP+++++SW
Sbjct: 190 SMLGGLVKAGELRDARRLFDEMPQRDLISW------------------------------ 219
Query: 231 NNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFH 290
N+M++GY R + +A LF+ +P R+ +SW++M+ GY G + A +F
Sbjct: 220 --------NTMLDGYARCREMSKAFELFEKMPERNTVSWSTMVMGYSKAGDMEMARVMFD 271
Query: 291 NMP--DRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANI 348
MP ++ V WT +I+G + L EA L +M A G+ A + A + +
Sbjct: 272 KMPLPAKNVVTWTIIIAGYAEKGLLKEADRLVDQMVASGLKFDAAAVISILAACTESGLL 331
Query: 349 DLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGF 408
LG +IH +L ++ S+ + N L+ MYAKCG + A+++F+++ +DLVSWN+M+ G
Sbjct: 332 SLGMRIHSILKRSNLGSNAYVLNALLDMYAKCGNLKKAFDVFNDIPKKDLVSWNTMLHGL 391
Query: 409 SHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPG 468
HG E +++F M G P+ VTF+ +L +C+HAGL+ G + F +M VY + P
Sbjct: 392 GVHGHGKEAIELFSRMRREGIRPDKVTFIAVLCSCNHAGLIDEGIDYFYSMEKVYDLVPQ 451
Query: 469 PEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRL 528
EHY +++LLGR G++KEA + V +P EP+ IWGALLGAC +IA+ L
Sbjct: 452 VEHYGCLVDLLGRVGRLKEAIKVVQTMPMEPNVVIWGALLGACRM-HNEVDIAKEVLDNL 510
Query: 529 LELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSG 588
++LDP + + +L NIYAA+ +R M GV K G S + GI F
Sbjct: 511 VKLDPCDPGNYSLLSNIYAAAEDWEGVADIRSKMKSMGVEKPSGASSVELEDGIHEFTVF 570
Query: 589 DK 590
DK
Sbjct: 571 DK 572
Score = 157 bits (398), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 104/364 (28%), Positives = 182/364 (50%), Gaps = 50/364 (13%)
Query: 27 IDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADA 86
+ +A LF+ M +R+ VS+N+ML G ++ G L +ARRLF+EMP+R+++SW M+ G A
Sbjct: 170 VRDAMKLFEKMSERDTVSWNSMLGGLVKAGELRDARRLFDEMPQRDLISWNTMLDGYARC 229
Query: 87 GRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPI--KNVISWNAMIAG 144
+ +A +LFE+MPERN VSW++MV+G + G++ AR +F+ MP+ KNV++W +IAG
Sbjct: 230 REMSKAFELFEKMPERNTVSWSTMVMGYSKAGDMEMARVMFDKMPLPAKNVVTWTIIIAG 289
Query: 145 YVECCMMGEAIVLFEEMEE---------------------------------------RN 165
Y E ++ EA L ++M N
Sbjct: 290 YAEKGLLKEADRLVDQMVASGLKFDAAAVISILAACTESGLLSLGMRIHSILKRSNLGSN 349
Query: 166 VVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMK- 224
+++ Y + G +++ + +F +P+K++VSW M+ G +G KE++ LF M+
Sbjct: 350 AYVLNALLDMYAKCGNLKKAFDVFNDIPKKDLVSWNTMLHGLGVHGHGKEAIELFSRMRR 409
Query: 225 -GICDNGNNCNVQSCNSMINGYIRFG--RLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQ 281
GI + C+ G I G + ++D VP + + ++D VG+
Sbjct: 410 EGIRPDKVTFIAVLCSCNHAGLIDEGIDYFYSMEKVYDLVPQVEH--YGCLVDLLGRVGR 467
Query: 282 VSNAYYLFHNMP-DRDAVAWTAMISGL-VQNELFVEATYLFMEMRAHGVPPLN-ATFSVL 338
+ A + MP + + V W A++ + NE+ + L ++ P N + S +
Sbjct: 468 LKEAIKVVQTMPMEPNVVIWGALLGACRMHNEVDIAKEVLDNLVKLDPCDPGNYSLLSNI 527
Query: 339 FGAA 342
+ AA
Sbjct: 528 YAAA 531
Score = 38.5 bits (88), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/99 (23%), Positives = 47/99 (47%)
Query: 346 ANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMV 405
AN++ +Q+H +++ DL + LIS + C + A +F+ + ++ NS++
Sbjct: 30 ANLNQVKQLHAQIIRRNLHEDLHIAPKLISALSLCRQTNLAVRVFNQVQEPNVHLCNSLI 89
Query: 406 MGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACS 444
+ + + VF M G ++ T+ +L ACS
Sbjct: 90 RAHAQNSQPYQAFFVFSEMQRFGLFADNFTYPFLLKACS 128
>sp|O23169|PP353_ARATH Pentatricopeptide repeat-containing protein At4g37170
OS=Arabidopsis thaliana GN=PCMP-H5 PE=3 SV=1
Length = 691
Score = 277 bits (708), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 148/477 (31%), Positives = 260/477 (54%), Gaps = 9/477 (1%)
Query: 120 LNEARKVFNSMP----IKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISG 175
L E +KV + + ++ WN ++ Y +C + +A +F+EM R++ +W M++G
Sbjct: 101 LEEGKKVHEHIRTSGFVPGIVIWNRLLRMYAKCGSLVDARKVFDEMPNRDLCSWNVMVNG 160
Query: 176 YCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNN--- 232
Y G +EE LF M K+ SWTAM+ G+ +E+L+L+ M+ + ++ N
Sbjct: 161 YAEVGLLEEARKLFDEMTEKDSYSWTAMVTGYVKKDQPEEALVLYSLMQRVPNSRPNIFT 220
Query: 233 CNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNM 292
++ + IR G+ E ++ DE+ W+S++D Y G + A +F +
Sbjct: 221 VSIAVAAAAAVKCIRRGK-EIHGHIVRAGLDSDEVLWSSLMDMYGKCGCIDEARNIFDKI 279
Query: 293 PDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGR 352
++D V+WT+MI ++ + E LF E+ P TF+ + A +LG+
Sbjct: 280 VEKDVVSWTSMIDRYFKSSRWREGFSLFSELVGSCERPNEYTFAGVLNACADLTTEELGK 339
Query: 353 QIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHG 412
Q+H + + + + L+ MY KCG I++A ++ DLVSW S++ G + +G
Sbjct: 340 QVHGYMTRVGFDPYSFASSSLVDMYTKCGNIESAKHVVDGCPKPDLVSWTSLIGGCAQNG 399
Query: 413 LANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHY 472
+E LK F+ +L+SGT P+ VTF+ +LSAC+HAGLV +G E F ++ + +++ +HY
Sbjct: 400 QPDEALKYFDLLLKSGTKPDHVTFVNVLSACTHAGLVEKGLEFFYSITEKHRLSHTSDHY 459
Query: 473 VSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELD 532
+++LL R+G+ ++ + + +P +P +W ++LG C GN ++AE AA+ L +++
Sbjct: 460 TCLVDLLARSGRFEQLKSVISEMPMKPSKFLWASVLGGCS-TYGNIDLAEEAAQELFKIE 518
Query: 533 PLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGD 589
P N +V + NIYAA+G+ EE K+R M GV K PG SW +F++ D
Sbjct: 519 PENPVTYVTMANIYAAAGKWEEEGKMRKRMQEIGVTKRPGSSWTEIKRKRHVFIAAD 575
Score = 155 bits (392), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 122/478 (25%), Positives = 211/478 (44%), Gaps = 73/478 (15%)
Query: 42 VVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPE 101
+V +N +L + + G L +AR++F+EMP R++ SW M+ G A+ G + EARKLF+EM E
Sbjct: 120 IVIWNRLLRMYAKCGSLVDARKVFDEMPNRDLCSWNVMVNGYAEVGLLEEARKLFDEMTE 179
Query: 102 RNVVSWNSMVVGLIRNGELNEA-------RKVFNSMPIKNVISWNAMIAGYVECCMMGEA 154
++ SW +MV G ++ + EA ++V NS P +S A V+C G+
Sbjct: 180 KDSYSWTAMVTGYVKKDQPEEALVLYSLMQRVPNSRPNIFTVSIAVAAAAAVKCIRRGKE 239
Query: 155 I--VLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGF 212
I + + + V W+S++ Y + G ++E +F ++ K+VVSWT+MI + +
Sbjct: 240 IHGHIVRAGLDSDEVLWSSLMDMYGKCGCIDEARNIFDKIVEKDVVSWTSMIDRYFKSSR 299
Query: 213 HKESLLLFIEMKGICDNGN------------NCNVQSCNSMINGYI-RFGRLEEAQNLFD 259
+E LF E+ G C+ N + + ++GY+ R G FD
Sbjct: 300 WREGFSLFSELVGSCERPNEYTFAGVLNACADLTTEELGKQVHGYMTRVG--------FD 351
Query: 260 TVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYL 319
+ +S++D Y G + +A ++ P D V+WT++I G QN EA
Sbjct: 352 PY----SFASSSLVDMYTKCGNIESAKHVVDGCPKPDLVSWTSLIGGCAQNGQPDEALKY 407
Query: 320 FMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQ-IHCVLMKTESESDLILENCLISMYA 378
F + G P + TF + A ++ G + + + K CL+ + A
Sbjct: 408 FDLLLKSGTKPDHVTFVNVLSACTHAGLVEKGLEFFYSITEKHRLSHTSDHYTCLVDLLA 467
Query: 379 KCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLG 438
+ G + ++ S M + P+ +
Sbjct: 468 RSGRFEQLKSVISEMPMK----------------------------------PSKFLWAS 493
Query: 439 ILSACSHAGLVSRGWELFNAMFDVYKIQP-GPEHYVSMINLLGRAGKIKEAEEFVLRL 495
+L CS G + E A +++KI+P P YV+M N+ AGK +E + R+
Sbjct: 494 VLGGCSTYGNIDLAEE---AAQELFKIEPENPVTYVTMANIYAAAGKWEEEGKMRKRM 548
Score = 71.2 bits (173), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 60/233 (25%), Positives = 104/233 (44%), Gaps = 14/233 (6%)
Query: 304 ISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTES 363
I L +L EA L + P +T+ L T ++ G+++H + +
Sbjct: 61 IDVLCGQKLLREAVQLLGRAKK----PPASTYCNLIQVCSQTRALEEGKKVHEHIRTSGF 116
Query: 364 ESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFES 423
+++ N L+ MYAKCG + +A +F M +RDL SWN MV G++ GL E K+F+
Sbjct: 117 VPGIVIWNRLLRMYAKCGSLVDARKVFDEMPNRDLCSWNVMVNGYAEVGLLEEARKLFDE 176
Query: 424 MLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAG 483
M T +S ++ +++ L++ M V +P VS+ A
Sbjct: 177 M----TEKDSYSWTAMVTGYVKKDQPEEALVLYSLMQRVPNSRPNI-FTVSIAVAAAAAV 231
Query: 484 KI----KEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELD 532
K KE ++R + D +W +L+ G C G + A + +++E D
Sbjct: 232 KCIRRGKEIHGHIVRAGLDSDEVLWSSLMDMYGKC-GCIDEARNIFDKIVEKD 283
Score = 62.8 bits (151), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 66/296 (22%), Positives = 130/296 (43%), Gaps = 44/296 (14%)
Query: 15 TSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMP---ER 71
+S + Y K G IDEA+ +F + +++VVS+ +M+ + ++ R E LF E+ ER
Sbjct: 257 SSLMDMYGKCGCIDEARNIFDKIVEKDVVSWTSMIDRYFKSSRWREGFSLFSELVGSCER 316
Query: 72 -NVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSW----NSMVVGLIRNGELNEARKV 126
N ++ ++ AD +++ M + +S+V + G + A+ V
Sbjct: 317 PNEYTFAGVLNACADLTTEELGKQVHGYMTRVGFDPYSFASSSLVDMYTKCGNIESAKHV 376
Query: 127 FNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEM----EERNVVTWTSMISGYCRAGEV 182
+ P +++SW ++I G + EA+ F+ + + + VT+ +++S AG V
Sbjct: 377 VDGCPKPDLVSWTSLIGGCAQNGQPDEALKYFDLLLKSGTKPDHVTFVNVLSACTHAGLV 436
Query: 183 EEGYCLFRRMPRKNVVS-----WTAMIGGFAWNGFH------------KESLLLFIEMKG 225
E+G F + K+ +S +T ++ A +G K S L+ + G
Sbjct: 437 EKGLEFFYSITEKHRLSHTSDHYTCLVDLLARSGRFEQLKSVISEMPMKPSKFLWASVLG 496
Query: 226 ICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQ 281
C N ++ E AQ LF P + +++ +M + Y + G+
Sbjct: 497 GCSTYGNIDLAE--------------EAAQELFKIEP-ENPVTYVTMANIYAAAGK 537
>sp|Q9STE1|PP333_ARATH Pentatricopeptide repeat-containing protein At4g21300
OS=Arabidopsis thaliana GN=PCMP-E36 PE=3 SV=1
Length = 857
Score = 276 bits (706), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 192/630 (30%), Positives = 311/630 (49%), Gaps = 62/630 (9%)
Query: 15 TSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVV 74
+S I Y + G ID LF + Q++ V +N ML+G+ + G L + F M + +
Sbjct: 177 SSLIKAYLEYGKIDVPSKLFDRVLQKDCVIWNVMLNGYAKCGALDSVIKGFSVM-RMDQI 235
Query: 75 SWTAMI--CGLADAGRVCEARKLFE---EMPERNVVSW--------NSMVVGLIRNGELN 121
S A+ C L+ VC ++ L + ++ VVS NS++ + G +
Sbjct: 236 SPNAVTFDCVLS----VCASKLLIDLGVQLHGLVVVSGVDFEGSIKNSLLSMYSKCGRFD 291
Query: 122 EARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNV----VTWTSM----- 172
+A K+F M + ++WN MI+GYV+ +M E++ F EM V +T++S+
Sbjct: 292 DASKLFRMMSRADTVTWNCMISGYVQSGLMEESLTFFYEMISSGVLPDAITFSSLLPSVS 351
Query: 173 ------------------------------ISGYCRAGEVEEGYCLFRRMPRKNVVSWTA 202
I Y + V +F + +VV +TA
Sbjct: 352 KFENLEYCKQIHCYIMRHSISLDIFLTSALIDAYFKCRGVSMAQNIFSQCNSVDVVVFTA 411
Query: 203 MIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYI--RFGRLEEAQNLFDT 260
MI G+ NG + +SL +F + + + N + S +I + + GR +
Sbjct: 412 MISGYLHNGLYIDSLEMFRWLVKVKISPNEITLVSILPVIGILLALKLGRELHGFIIKKG 471
Query: 261 VPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLF 320
R I ++ID Y G+++ AY +F + RD V+W +MI+ Q++ A +F
Sbjct: 472 FDNRCNIG-CAVIDMYAKCGRMNLAYEIFERLSKRDIVSWNSMITRCAQSDNPSAAIDIF 530
Query: 321 MEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKC 380
+M G+ + S A + G+ IH ++K SD+ E+ LI MYAKC
Sbjct: 531 RQMGVSGICYDCVSISAALSACANLPSESFGKAIHGFMIKHSLASDVYSESTLIDMYAKC 590
Query: 381 GVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLE-SGTHPNSVTFLGI 439
G + A N+F M +++VSWNS++ +HG ++L +F M+E SG P+ +TFL I
Sbjct: 591 GNLKAAMNVFKTMKEKNIVSWNSIIAACGNHGKLKDSLCLFHEMVEKSGIRPDQITFLEI 650
Query: 440 LSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEP 499
+S+C H G V G F +M + Y IQP EHY +++L GRAG++ EA E V +PF P
Sbjct: 651 ISSCCHVGDVDEGVRFFRSMTEDYGIQPQQEHYACVVDLFGRAGRLTEAYETVKSMPFPP 710
Query: 500 DHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLR 559
D +WG LLGAC N E+AE A+ +L++LDP N+ +V++ N +A + K+R
Sbjct: 711 DAGVWGTLLGACRL-HKNVELAEVASSKLMDLDPSNSGYYVLISNAHANAREWESVTKVR 769
Query: 560 MDMGLKGVRKVPGCSWLMRNGGIQMFLSGD 589
M + V+K+PG SW+ N +F+SGD
Sbjct: 770 SLMKEREVQKIPGYSWIEINKRTHLFVSGD 799
Score = 144 bits (363), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 121/465 (26%), Positives = 205/465 (44%), Gaps = 33/465 (7%)
Query: 66 EEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPER--NVVSWNSMVVGLIRNGELNEA 123
+ + ++ AM +D G K+F + R ++ WNS++ +RNG LN+A
Sbjct: 69 DSYTDERILGMYAMCGSFSDCG------KMFYRLDLRRSSIRPWNSIISSFVRNGLLNQA 122
Query: 124 RKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEER--------NVVTWTSMISG 175
+ M V + V+ C+ + + + + N +S+I
Sbjct: 123 LAFYFKMLCFGVSPDVSTFPCLVKACVALKNFKGIDFLSDTVSSLGMDCNEFVASSLIKA 182
Query: 176 YCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLF--IEMKGICDNGN-- 231
Y G+++ LF R+ +K+ V W M+ G+A G + F + M I N
Sbjct: 183 YLEYGKIDVPSKLFDRVLQKDCVIWNVMLNGYAKCGALDSVIKGFSVMRMDQISPNAVTF 242
Query: 232 NCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHN 291
+C + C S + I G + V I S++ Y G+ +A LF
Sbjct: 243 DCVLSVCASKL--LIDLGVQLHGLVVVSGVDFEGSIK-NSLLSMYSKCGRFDDASKLFRM 299
Query: 292 MPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLG 351
M D V W MISG VQ+ L E+ F EM + GV P TFS L + N++
Sbjct: 300 MSRADTVTWNCMISGYVQSGLMEESLTFFYEMISSGVLPDAITFSSLLPSVSKFENLEYC 359
Query: 352 RQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHH 411
+QIHC +M+ D+ L + LI Y KC + A NIFS S D+V + +M+ G+ H+
Sbjct: 360 KQIHCYIMRHSISLDIFLTSALIDAYFKCRGVSMAQNIFSQCNSVDVVVFTAMISGYLHN 419
Query: 412 GLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEH 471
GL ++L++F +++ PN +T + IL + G EL + I+ G ++
Sbjct: 420 GLYIDSLEMFRWLVKVKISPNEITLVSILPVIGILLALKLGRELHG-----FIIKKGFDN 474
Query: 472 Y----VSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACG 512
++I++ + G++ A E RL + D W +++ C
Sbjct: 475 RCNIGCAVIDMYAKCGRMNLAYEIFERLS-KRDIVSWNSMITRCA 518
Score = 55.1 bits (131), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 54/234 (23%), Positives = 97/234 (41%), Gaps = 14/234 (5%)
Query: 335 FSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMV 394
S+L A + G+Q+H L+ D + ++ MYA CG + +F +
Sbjct: 38 LSLLLQACSNPNLLRQGKQVHAFLIVNSISGDSYTDERILGMYAMCGSFSDCGKMFYRLD 97
Query: 395 SR--DLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRG 452
R + WNS++ F +GL N+ L + ML G P+ TF ++ AC A +G
Sbjct: 98 LRRSSIRPWNSIISSFVRNGLLNQALAFYFKMLCFGVSPDVSTFPCLVKACV-ALKNFKG 156
Query: 453 WELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACG 512
+ + + S+I GKI + R+ + D IW +L
Sbjct: 157 IDFLSDTVSSLGMDCNEFVASSLIKAYLEYGKIDVPSKLFDRV-LQKDCVIWNVMLNGYA 215
Query: 513 FCEG-NAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLK 565
C ++ I + R+ ++ P NA + ++ A+ KL +D+G++
Sbjct: 216 KCGALDSVIKGFSVMRMDQISP-NAVTFDCVLSVCAS--------KLLIDLGVQ 260
>sp|O49619|PP350_ARATH Pentatricopeptide repeat-containing protein At4g35130,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H27 PE=3
SV=1
Length = 804
Score = 276 bits (706), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 179/626 (28%), Positives = 319/626 (50%), Gaps = 53/626 (8%)
Query: 14 LTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMP---- 69
LT ++ ++ +++A LF M + + +N M+ GF G EA + + M
Sbjct: 67 LTRALRGFADSRLMEDALQLFDEMNKADAFLWNVMIKGFTSCGLYIEAVQFYSRMVFAGV 126
Query: 70 ERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVS----WNSMVVGLIRNGELNEARK 125
+ + ++ +I +A + E +K+ + + VS NS++ ++ G +A K
Sbjct: 127 KADTFTYPFVIKSVAGISSLEEGKKIHAMVIKLGFVSDVYVCNSLISLYMKLGCAWDAEK 186
Query: 126 VFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEM------------------------ 161
VF MP ++++SWN+MI+GY+ +++LF+EM
Sbjct: 187 VFEEMPERDIVSWNSMISGYLALGDGFSSLMLFKEMLKCGFKPDRFSTMSALGACSHVYS 246
Query: 162 ----------------EERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIG 205
E +V+ TS++ Y + GEV +F M ++N+V+W MIG
Sbjct: 247 PKMGKEIHCHAVRSRIETGDVMVMTSILDMYSKYGEVSYAERIFNGMIQRNIVAWNVMIG 306
Query: 206 GFAWNGFHKESLLLFIEMKGICDNGNNCNV-QSCNSMINGYIRFGRLEEAQNLFDTVPVR 264
+A NG ++ L F +M NG +V S N + I GR + +
Sbjct: 307 CYARNGRVTDAFLCFQKMSE--QNGLQPDVITSINLLPASAILEGRTIHGYAMRRGF-LP 363
Query: 265 DEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMR 324
+ T++ID Y GQ+ +A +F M +++ ++W ++I+ VQN A LF E+
Sbjct: 364 HMVLETALIDMYGECGQLKSAEVIFDRMAEKNVISWNSIIAAYVQNGKNYSALELFQELW 423
Query: 325 AHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVID 384
+ P + T + + A + ++ GR+IH ++K+ S+ I+ N L+ MYA CG ++
Sbjct: 424 DSSLVPDSTTIASILPAYAESLSLSEGREIHAYIVKSRYWSNTIILNSLVHMYAMCGDLE 483
Query: 385 NAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACS 444
+A F++++ +D+VSWNS++M ++ HG ++ +F M+ S +PN TF +L+ACS
Sbjct: 484 DARKCFNHILLKDVVSWNSIIMAYAVHGFGRISVWLFSEMIASRVNPNKSTFASLLAACS 543
Query: 445 HAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIW 504
+G+V GWE F +M Y I PG EHY M++L+GR G A+ F+ +PF P RIW
Sbjct: 544 ISGMVDEGWEYFESMKREYGIDPGIEHYGCMLDLIGRTGNFSAAKRFLEEMPFVPTARIW 603
Query: 505 GALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGL 564
G+LL A + IAE AA+++ +++ N +V+L N+YA +GR + +++++ M
Sbjct: 604 GSLLNA-SRNHKDITIAEFAAEQIFKMEHDNTGCYVLLLNMYAEAGRWEDVNRIKLLMES 662
Query: 565 KGVRKVPGCSWLMRNGGIQMFLSGDK 590
KG+ + S + G +F +GD+
Sbjct: 663 KGISRTSSRSTVEAKGKSHVFTNGDR 688
Score = 98.2 bits (243), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 81/332 (24%), Positives = 150/332 (45%), Gaps = 52/332 (15%)
Query: 11 VVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPE 70
V+ +TS + YSK G + A+ +F M QRN+V++N M+ + +NGR+++A F++M E
Sbjct: 267 VMVMTSILDMYSKYGEVSYAERIFNGMIQRNIVAWNVMIGCYARNGRVTDAFLCFQKMSE 326
Query: 71 RN------------------------------------VVSWTAMICGLADAGRVCEARK 94
+N +V TA+I + G++ A
Sbjct: 327 QNGLQPDVITSINLLPASAILEGRTIHGYAMRRGFLPHMVLETALIDMYGECGQLKSAEV 386
Query: 95 LFEEMPERNVVSWNSMVVGLIRNGELNEARKVF----NSMPIKNVISWNAMIAGYVECCM 150
+F+ M E+NV+SWNS++ ++NG+ A ++F +S + + + +++ Y E
Sbjct: 387 IFDRMAEKNVISWNSIIAAYVQNGKNYSALELFQELWDSSLVPDSTTIASILPAYAESLS 446
Query: 151 MGEA----IVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGG 206
+ E + + N + S++ Y G++E+ F + K+VVSW ++I
Sbjct: 447 LSEGREIHAYIVKSRYWSNTIILNSLVHMYAMCGDLEDARKCFNHILLKDVVSWNSIIMA 506
Query: 207 FAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDE 266
+A +GF + S+ LF EM + N N + S++ G ++E F+++
Sbjct: 507 YAVHGFGRISVWLFSEMIA---SRVNPNKSTFASLLAACSISGMVDEGWEYFESMKREYG 563
Query: 267 IS-----WTSMIDGYLSVGQVSNAYYLFHNMP 293
I + M+D G S A MP
Sbjct: 564 IDPGIEHYGCMLDLIGRTGNFSAAKRFLEEMP 595
>sp|Q9LW63|PP251_ARATH Putative pentatricopeptide repeat-containing protein At3g23330
OS=Arabidopsis thaliana GN=PCMP-H32 PE=3 SV=1
Length = 715
Score = 276 bits (706), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 178/598 (29%), Positives = 304/598 (50%), Gaps = 17/598 (2%)
Query: 8 KSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEE 67
K+L+ L + T+ + + A F + S + ++S + L EA LF+
Sbjct: 5 KALIKTLIKNPTRIKSKSQAKQLHAQFIRTQSLSHTSASIVISIYTNLKLLHEALLLFKT 64
Query: 68 MPERNVVSWTAMICGLADAGRVCEARKLFEEM------PERNV---VSWNSMVVGLIRNG 118
+ V++W ++I D +A F EM P+ NV V + ++ +R G
Sbjct: 65 LKSPPVLAWKSVIRCFTDQSLFSKALASFVEMRASGRCPDHNVFPSVLKSCTMMMDLRFG 124
Query: 119 ELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVL---FEEMEERNVVTWTSMISG 175
E V M ++ + NA++ Y + MG I + F+EM +R + +
Sbjct: 125 ESVHGFIVRLGMDC-DLYTGNALMNMYAKLLGMGSKISVGNVFDEMPQRTSNSGDEDVKA 183
Query: 176 YC--RAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNC 233
++ +F MPRK+VVS+ +I G+A +G ++++L + EM ++
Sbjct: 184 ETCIMPFGIDSVRRVFEVMPRKDVVSYNTIIAGYAQSGMYEDALRMVREMGTTDLKPDSF 243
Query: 234 NVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISW-TSMIDGYLSVGQVSNAYYLFHNM 292
+ S + + Y+ + +E + ++ +S++D Y ++ ++ +F +
Sbjct: 244 TLSSVLPIFSEYVDVIKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSRL 303
Query: 293 PDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGR 352
RD ++W ++++G VQN + EA LF +M V P FS + A A + LG+
Sbjct: 304 YCRDGISWNSLVAGYVQNGRYNEALRLFRQMVTAKVKPGAVAFSSVIPACAHLATLHLGK 363
Query: 353 QIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHG 412
Q+H +++ S++ + + L+ MY+KCG I A IF M D VSW +++MG + HG
Sbjct: 364 QLHGYVLRGGFGSNIFIASALVDMYSKCGNIKAARKIFDRMNVLDEVSWTAIIMGHALHG 423
Query: 413 LANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHY 472
+E + +FE M G PN V F+ +L+ACSH GLV W FN+M VY + EHY
Sbjct: 424 HGHEAVSLFEEMKRQGVKPNQVAFVAVLTACSHVGLVDEAWGYFNSMTKVYGLNQELEHY 483
Query: 473 VSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELD 532
++ +LLGRAGK++EA F+ ++ EP +W LL +C N E+AE A+++ +D
Sbjct: 484 AAVADLLGRAGKLEEAYNFISKMCVEPTGSVWSTLLSSCS-VHKNLELAEKVAEKIFTVD 542
Query: 533 PLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDK 590
N A+V++CN+YA++GR E KLR+ M KG+RK P CSW+ F+SGD+
Sbjct: 543 SENMGAYVLMCNMYASNGRWKEMAKLRLRMRKKGLRKKPACSWIEMKNKTHGFVSGDR 600
>sp|Q9SV26|PP297_ARATH Pentatricopeptide repeat-containing protein At4g01030,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H65 PE=3
SV=2
Length = 768
Score = 276 bits (706), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 181/624 (29%), Positives = 314/624 (50%), Gaps = 59/624 (9%)
Query: 30 AKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRV 89
A LF MP+R+ +++N ++ L++G +A LF EM ++ + + L +V
Sbjct: 42 ANKLFDEMPKRDDLAWNEIVMVNLRSGNWEKAVELFREMQFSGAKAYDSTMVKLL---QV 98
Query: 90 CEARKLFEEMP-----------ERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISW 138
C ++ F E E NV NS++V RNG+L +RKVFNSM +N+ SW
Sbjct: 99 CSNKEGFAEGRQIHGYVLRLGLESNVSMCNSLIVMYSRNGKLELSRKVFNSMKDRNLSSW 158
Query: 139 NAMIAGYVECCMMGEAIVLFEEME----ERNVVTWTSMISGYCRAGEVEEGYCLFRRMP- 193
N++++ Y + + +AI L +EME + ++VTW S++SGY G ++ + +RM
Sbjct: 159 NSILSSYTKLGYVDDAIGLLDEMEICGLKPDIVTWNSLLSGYASKGLSKDAIAVLKRMQI 218
Query: 194 ---RKNVVSWTAMIGGFA--------------------WNGFHKESLLLFIEMKG----- 225
+ + S ++++ A W + E+ L+ + +K
Sbjct: 219 AGLKPSTSSISSLLQAVAEPGHLKLGKAIHGYILRNQLWYDVYVETTLIDMYIKTGYLPY 278
Query: 226 ---ICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVR----DEISWTSMIDGYLS 278
+ D + N+ + NS+++G L++A+ L + D I+W S+ GY +
Sbjct: 279 ARMVFDMMDAKNIVAWNSLVSGLSYACLLKDAEALMIRMEKEGIKPDAITWNSLASGYAT 338
Query: 279 VGQVSNAYYLFHNMPDR----DAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNAT 334
+G+ A + M ++ + V+WTA+ SG +N F A +F++M+ GV P AT
Sbjct: 339 LGKPEKALDVIGKMKEKGVAPNVVSWTAIFSGCSKNGNFRNALKVFIKMQEEGVGPNAAT 398
Query: 335 FSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMV 394
S L G + + G+++H ++ D + L+ MY K G + +A IF +
Sbjct: 399 MSTLLKILGCLSLLHSGKEVHGFCLRKNLICDAYVATALVDMYGKSGDLQSAIEIFWGIK 458
Query: 395 SRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWE 454
++ L SWN M+MG++ G E + F MLE+G P+++TF +LS C ++GLV GW+
Sbjct: 459 NKSLASWNCMLMGYAMFGRGEEGIAAFSVMLEAGMEPDAITFTSVLSVCKNSGLVQEGWK 518
Query: 455 LFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFC 514
F+ M Y I P EH M++LLGR+G + EA +F+ + +PD IWGA L +C
Sbjct: 519 YFDLMRSRYGIIPTIEHCSCMVDLLGRSGYLDEAWDFIQTMSLKPDATIWGAFLSSCKI- 577
Query: 515 EGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCS 574
+ E+AE A KRL L+P N+ ++++ N+Y+ R + ++R M VR S
Sbjct: 578 HRDLELAEIAWKRLQVLEPHNSANYMMMINLYSNLNRWEDVERIRNLMRNNRVRVQDLWS 637
Query: 575 WLMRNGGIQMFLSGDKIPAQVAEI 598
W+ + + +F + K +I
Sbjct: 638 WIQIDQTVHIFYAEGKTHPDEGDI 661
Score = 140 bits (352), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 110/449 (24%), Positives = 201/449 (44%), Gaps = 26/449 (5%)
Query: 113 GLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSM 172
GLI+ G N +V + A + Y C +G A LF+EM +R+ + W +
Sbjct: 12 GLIKRGLDNSDTRVVS-----------ASMGFYGRCVSLGFANKLFDEMPKRDDLAWNEI 60
Query: 173 ISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKG-ICDNGN 231
+ R+G E+ LFR M ++ + + +KE ++ G + G
Sbjct: 61 VMVNLRSGNWEKAVELFREMQFSGAKAYDSTMVKLLQVCSNKEGFAEGRQIHGYVLRLGL 120
Query: 232 NCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHN 291
NV CNS+I Y R G+LE ++ +F+++ R+ SW S++ Y +G V +A L
Sbjct: 121 ESNVSMCNSLIVMYSRNGKLELSRKVFNSMKDRNLSSWNSILSSYTKLGYVDDAIGLLDE 180
Query: 292 MP----DRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATAN 347
M D V W +++SG L +A + M+ G+ P ++ S L A +
Sbjct: 181 MEICGLKPDIVTWNSLLSGYASKGLSKDAIAVLKRMQIAGLKPSTSSISSLLQAVAEPGH 240
Query: 348 IDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMG 407
+ LG+ IH +++ + D+ +E LI MY K G + A +F M ++++V+WNS+V G
Sbjct: 241 LKLGKAIHGYILRNQLWYDVYVETTLIDMYIKTGYLPYARMVFDMMDAKNIVAWNSLVSG 300
Query: 408 FSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQP 467
S+ L + + M + G P+++T+ + S + G + ++ M + + P
Sbjct: 301 LSYACLLKDAEALMIRMEKEGIKPDAITWNSLASGYATLGKPEKALDVIGKMKE-KGVAP 359
Query: 468 GPEHYVSMINLLGRAGKIKEAEEFVLRLPFE---PDHRIWGAL---LGACGFCEGNAEIA 521
+ ++ + + G + A + +++ E P+ L LG E+
Sbjct: 360 NVVSWTAIFSGCSKNGNFRNALKVFIKMQEEGVGPNAATMSTLLKILGCLSLLHSGKEVH 419
Query: 522 EHAAKRLLELDPLNAPAHVVLCNIYAASG 550
++ L D A A L ++Y SG
Sbjct: 420 GFCLRKNLICDAYVATA---LVDMYGKSG 445
Score = 122 bits (307), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 105/456 (23%), Positives = 201/456 (44%), Gaps = 66/456 (14%)
Query: 16 SSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMP----ER 71
S I YS+ G ++ ++ +F M RN+ S+N++LS + + G + +A L +EM +
Sbjct: 129 SLIVMYSRNGKLELSRKVFNSMKDRNLSSWNSILSSYTKLGYVDDAIGLLDEMEICGLKP 188
Query: 72 NVVSWTAMICGLADAGRVCEARKLFEEM------PERNVVS------------------- 106
++V+W +++ G A G +A + + M P + +S
Sbjct: 189 DIVTWNSLLSGYASKGLSKDAIAVLKRMQIAGLKPSTSSISSLLQAVAEPGHLKLGKAIH 248
Query: 107 --------W------NSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMG 152
W +++ I+ G L AR VF+ M KN+++WN++++G C++
Sbjct: 249 GYILRNQLWYDVYVETTLIDMYIKTGYLPYARMVFDMMDAKNIVAWNSLVSGLSYACLLK 308
Query: 153 EAIVLFEEMEERNV----VTWTSMISGYCRAGEVEEGYCLFRRMPRK----NVVSWTAMI 204
+A L ME+ + +TW S+ SGY G+ E+ + +M K NVVSWTA+
Sbjct: 309 DAEALMIRMEKEGIKPDAITWNSLASGYATLGKPEKALDVIGKMKEKGVAPNVVSWTAIF 368
Query: 205 GGFAWNGFHKESLLLFIEMK--GICDNGNN----CNVQSCNSMINGYIRFGRLEEAQNLF 258
G + NG + +L +FI+M+ G+ N + C S+++ +NL
Sbjct: 369 SGCSKNGNFRNALKVFIKMQEEGVGPNAATMSTLLKILGCLSLLHSGKEVHGFCLRKNL- 427
Query: 259 DTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATY 318
+ D T+++D Y G + +A +F + ++ +W M+ G E
Sbjct: 428 ----ICDAYVATALVDMYGKSGDLQSAIEIFWGIKNKSLASWNCMLMGYAMFGRGEEGIA 483
Query: 319 LFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILE--NCLISM 376
F M G+ P TF+ + + + G + + LM++ +E +C++ +
Sbjct: 484 AFSVMLEAGMEPDAITFTSVLSVCKNSGLVQEGWK-YFDLMRSRYGIIPTIEHCSCMVDL 542
Query: 377 YAKCGVIDNAYNIFSNM-VSRDLVSWNSMVMGFSHH 411
+ G +D A++ M + D W + + H
Sbjct: 543 LGRSGYLDEAWDFIQTMSLKPDATIWGAFLSSCKIH 578
>sp|Q9M9E2|PPR45_ARATH Pentatricopeptide repeat-containing protein At1g15510,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H73 PE=2
SV=1
Length = 866
Score = 275 bits (703), Expect = 8e-73, Method: Compositional matrix adjust.
Identities = 180/630 (28%), Positives = 309/630 (49%), Gaps = 59/630 (9%)
Query: 21 YSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEM-------PERNV 73
+ + G + +A +F M +RN+ S+N ++ G+ + G EA L+ M P+
Sbjct: 139 FVRFGNLVDAWYVFGKMSERNLFSWNVLVGGYAKQGYFDEAMCLYHRMLWVGGVKPDVYT 198
Query: 74 VSWTAMICG-LADAGRVCEAR-KLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMP 131
CG + D R E + E ++ N+++ ++ G++ AR +F+ MP
Sbjct: 199 FPCVLRTCGGIPDLARGKEVHVHVVRYGYELDIDVVNALITMYVKCGDVKSARLLFDRMP 258
Query: 132 IKNVISWNAMIAGYVECCMMGEAIVLFEEME----ERNVVTWTSMISG------------ 175
+++ISWNAMI+GY E M E + LF M + +++T TS+IS
Sbjct: 259 RRDIISWNAMISGYFENGMCHEGLELFFAMRGLSVDPDLMTLTSVISACELLGDRRLGRD 318
Query: 176 -----------------------YCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGF 212
Y AG E LF RM RK++VSWT MI G+ +N
Sbjct: 319 IHAYVITTGFAVDISVCNSLTQMYLNAGSWREAEKLFSRMERKDIVSWTTMISGYEYNFL 378
Query: 213 HKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWT-- 270
+++ + M + V + +++ G L+ L IS+
Sbjct: 379 PDKAIDTYRMMDQDSVKPDEITVAA---VLSACATLGDLDTGVELHKLAIKARLISYVIV 435
Query: 271 --SMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGV 328
++I+ Y + A +FHN+P ++ ++WT++I+GL N EA +M+ +
Sbjct: 436 ANNLINMYSKCKCIDKALDIFHNIPRKNVISWTSIIAGLRLNNRCFEALIFLRQMKM-TL 494
Query: 329 PPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYN 388
P T + A + G++IH +++T D L N L+ MY +CG ++ A++
Sbjct: 495 QPNAITLTAALAACARIGALMCGKEIHAHVLRTGVGLDDFLPNALLDMYVRCGRMNTAWS 554
Query: 389 IFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGL 448
F N +D+ SWN ++ G+S G + +++F+ M++S P+ +TF+ +L CS + +
Sbjct: 555 QF-NSQKKDVTSWNILLTGYSERGQGSMVVELFDRMVKSRVRPDEITFISLLCGCSKSQM 613
Query: 449 VSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALL 508
V +G F+ M D Y + P +HY +++LLGRAG+++EA +F+ ++P PD +WGALL
Sbjct: 614 VRQGLMYFSKMED-YGVTPNLKHYACVVDLLGRAGELQEAHKFIQKMPVTPDPAVWGALL 672
Query: 509 GACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVR 568
AC ++ E +A+ + ELD + +++LCN+YA G+ E K+R M G+
Sbjct: 673 NACRI-HHKIDLGELSAQHIFELDKKSVGYYILLCNLYADCGKWREVAKVRRMMKENGLT 731
Query: 569 KVPGCSWLMRNGGIQMFLSGDKIPAQVAEI 598
GCSW+ G + FLS DK Q EI
Sbjct: 732 VDAGCSWVEVKGKVHAFLSDDKYHPQTKEI 761
Score = 143 bits (360), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 107/390 (27%), Positives = 173/390 (44%), Gaps = 53/390 (13%)
Query: 82 GLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEAR----KVFN----SMPIK 133
GL G++ EA KL M E V + V L+R E A+ KV++ SM
Sbjct: 68 GLCANGKLEEAMKLLNSMQELRVAVDEDVFVALVRLCEWKRAQEEGSKVYSIALSSMSSL 127
Query: 134 NVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRM- 192
V NA +A +V + +A +F +M ERN+ +W ++ GY + G +E CL+ RM
Sbjct: 128 GVELGNAFLAMFVRFGNLVDAWYVFGKMSERNLFSWNVLVGGYAKQGYFDEAMCLYHRML 187
Query: 193 ----PRKNVVSWTAMI---GGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGY 245
+ +V ++ ++ GG KE + + G ++ N++I Y
Sbjct: 188 WVGGVKPDVYTFPCVLRTCGGIPDLARGKEVHVHVVRY------GYELDIDVVNALITMY 241
Query: 246 IRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMIS 305
++ G ++ A+ LFD +P RD ISW +MI GY
Sbjct: 242 VKCGDVKSARLLFDRMPRRDIISWNAMISGYF---------------------------- 273
Query: 306 GLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESES 365
+N + E LF MR V P T + + A + LGR IH ++ T
Sbjct: 274 ---ENGMCHEGLELFFAMRGLSVDPDLMTLTSVISACELLGDRRLGRDIHAYVITTGFAV 330
Query: 366 DLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESML 425
D+ + N L MY G A +FS M +D+VSW +M+ G+ ++ L ++ + + M
Sbjct: 331 DISVCNSLTQMYLNAGSWREAEKLFSRMERKDIVSWTTMISGYEYNFLPDKAIDTYRMMD 390
Query: 426 ESGTHPNSVTFLGILSACSHAGLVSRGWEL 455
+ P+ +T +LSAC+ G + G EL
Sbjct: 391 QDSVKPDEITVAAVLSACATLGDLDTGVEL 420
>sp|Q9M2Y7|PP274_ARATH Pentatricopeptide repeat-containing protein At3g49710
OS=Arabidopsis thaliana GN=PCMP-H79 PE=2 SV=1
Length = 721
Score = 275 bits (703), Expect = 8e-73, Method: Compositional matrix adjust.
Identities = 189/585 (32%), Positives = 295/585 (50%), Gaps = 51/585 (8%)
Query: 21 YSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMI 80
YSK G + A+A F + NV SYN ++ + ++ ++ AR+LF+E+P+ + VS+ +I
Sbjct: 53 YSKCGRLSYARAAFYSTEEPNVFSYNVIVKAYAKDSKIHIARQLFDEIPQPDTVSYNTLI 112
Query: 81 CGLADAGRVCEARKLFEEMP----ERNVVSWNSMV------VGLIRNGELNEARKVFNSM 130
G ADA A LF+ M E + + + ++ V LI+ F+S
Sbjct: 113 SGYADARETFAAMVLFKRMRKLGFEVDGFTLSGLIAACCDRVDLIKQLHCFSVSGGFDSY 172
Query: 131 PIKNVISWNAMIAGYVECCMMGEAIVLFEEMEE-RNVVTWTSMISGYCRAGEVEEGYCLF 189
N NA + Y + ++ EA+ +F M+E R+ V+W SMI Y + E + L+
Sbjct: 173 SSVN----NAFVTYYSKGGLLREAVSVFYGMDELRDEVSWNSMIVAYGQHKEGAKALALY 228
Query: 190 RRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFG 249
+ M + GF + F S+L + S + +I G G
Sbjct: 229 KEM----------IFKGFKIDMFTLASVL--------------NALTSLDHLIGGRQFHG 264
Query: 250 RLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAY---YLFHNMPDRDAVAWTAMISG 306
+L +A ++ + +ID Y G Y +F + D V W MISG
Sbjct: 265 KLIKAGFH------QNSHVGSGLIDFYSKCGGCDGMYDSEKVFQEILSPDLVVWNTMISG 318
Query: 307 LVQN-ELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESES 365
N EL EA F +M+ G P + +F + A ++ +QIH + +K+ S
Sbjct: 319 YSMNEELSEEAVKSFRQMQRIGHRPDDCSFVCVTSACSNLSSPSQCKQIHGLAIKSHIPS 378
Query: 366 DLI-LENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESM 424
+ I + N LIS+Y K G + +A +F M + VS+N M+ G++ HG E L +++ M
Sbjct: 379 NRISVNNALISLYYKSGNLQDARWVFDRMPELNAVSFNCMIKGYAQHGHGTEALLLYQRM 438
Query: 425 LESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGK 484
L+SG PN +TF+ +LSAC+H G V G E FN M + +KI+P EHY MI+LLGRAGK
Sbjct: 439 LDSGIAPNKITFVAVLSACAHCGKVDEGQEYFNTMKETFKIEPEAEHYSCMIDLLGRAGK 498
Query: 485 IKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCN 544
++EAE F+ +P++P W ALLGAC N +AE AA L+ + PL A +V+L N
Sbjct: 499 LEEAERFIDAMPYKPGSVAWAALLGACR-KHKNMALAERAANELMVMQPLAATPYVMLAN 557
Query: 545 IYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGD 589
+YA + + E +R M K +RK PGCSW+ +F++ D
Sbjct: 558 MYADARKWEEMASVRKSMRGKRIRKKPGCSWIEVKKKKHVFVAED 602
Score = 70.9 bits (172), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 75/137 (54%), Gaps = 10/137 (7%)
Query: 18 ITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPER----NV 73
I+ Y K G + +A+ +F MP+ N VS+N M+ G+ Q+G +EA L++ M + N
Sbjct: 388 ISLYYKSGNLQDARWVFDRMPELNAVSFNCMIKGYAQHGHGTEALLLYQRMLDSGIAPNK 447
Query: 74 VSWTAMICGLADAGRVCEARKLFEEMPERNVVS-----WNSMVVGLIRNGELNEARKVFN 128
+++ A++ A G+V E ++ F M E + ++ M+ L R G+L EA + +
Sbjct: 448 ITFVAVLSACAHCGKVDEGQEYFNTMKETFKIEPEAEHYSCMIDLLGRAGKLEEAERFID 507
Query: 129 SMPIK-NVISWNAMIAG 144
+MP K ++W A++
Sbjct: 508 AMPYKPGSVAWAALLGA 524
Score = 42.4 bits (98), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 42/215 (19%), Positives = 84/215 (39%), Gaps = 44/215 (20%)
Query: 334 TFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCG------------ 381
TF L + A ++ G+ +H + +K+ S L N +++Y+KCG
Sbjct: 10 TFRDLLLKSVAERDLFTGKSLHALYVKSIVASSTYLSNHFVNLYSKCGRLSYARAAFYST 69
Query: 382 ---------VIDNAY----------NIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFE 422
VI AY +F + D VS+N+++ G++ + +F+
Sbjct: 70 EEPNVFSYNVIVKAYAKDSKIHIARQLFDEIPQPDTVSYNTLISGYADARETFAAMVLFK 129
Query: 423 SMLESGTHPNSVTFLGILSA-CSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSM----IN 477
M + G + T G+++A C L+ + + + G + Y S+ +
Sbjct: 130 RMRKLGFEVDGFTLSGLIAACCDRVDLIKQ--------LHCFSVSGGFDSYSSVNNAFVT 181
Query: 478 LLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACG 512
+ G ++EA + D W +++ A G
Sbjct: 182 YYSKGGLLREAVSVFYGMDELRDEVSWNSMIVAYG 216
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.136 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 221,256,998
Number of Sequences: 539616
Number of extensions: 9123160
Number of successful extensions: 31182
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 360
Number of HSP's successfully gapped in prelim test: 89
Number of HSP's that attempted gapping in prelim test: 18632
Number of HSP's gapped (non-prelim): 2736
length of query: 600
length of database: 191,569,459
effective HSP length: 123
effective length of query: 477
effective length of database: 125,196,691
effective search space: 59718821607
effective search space used: 59718821607
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 64 (29.3 bits)