Query 007519
Match_columns 600
No_of_seqs 553 out of 2972
Neff 11.5
Searched_HMMs 46136
Date Thu Mar 28 11:43:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007519.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007519hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 2.2E-86 4.8E-91 712.0 61.4 589 5-599 115-754 (857)
2 PLN03077 Protein ECB2; Provisi 100.0 1.7E-72 3.8E-77 604.6 56.4 557 6-571 46-625 (857)
3 PLN03081 pentatricopeptide (PP 100.0 1.9E-72 4.2E-77 589.9 53.5 494 102-599 85-591 (697)
4 PLN03218 maturation of RBCL 1; 100.0 3.1E-62 6.7E-67 514.2 50.9 495 71-572 368-916 (1060)
5 PLN03218 maturation of RBCL 1; 100.0 3.2E-61 6.9E-66 506.5 50.9 487 40-531 368-909 (1060)
6 PLN03081 pentatricopeptide (PP 100.0 1.2E-60 2.5E-65 501.0 46.2 453 9-467 85-561 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 7.3E-36 1.6E-40 329.6 53.1 540 12-562 330-897 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 9.6E-35 2.1E-39 320.7 53.5 540 16-567 300-868 (899)
9 PRK11447 cellulose synthase su 100.0 5.4E-27 1.2E-31 258.8 54.4 546 7-569 58-745 (1157)
10 PRK11447 cellulose synthase su 100.0 3.9E-26 8.5E-31 251.9 48.7 539 14-566 31-701 (1157)
11 PRK09782 bacteriophage N4 rece 100.0 1.3E-23 2.8E-28 221.4 50.9 529 20-564 53-705 (987)
12 PRK09782 bacteriophage N4 rece 99.9 1.7E-22 3.6E-27 213.0 49.9 535 8-563 75-738 (987)
13 KOG4626 O-linked N-acetylgluco 99.9 1E-22 2.2E-27 190.5 31.6 432 107-552 51-506 (966)
14 KOG4626 O-linked N-acetylgluco 99.9 4.6E-21 1E-25 179.6 27.1 412 138-563 51-483 (966)
15 TIGR00990 3a0801s09 mitochondr 99.9 1.5E-19 3.4E-24 187.7 38.7 249 310-564 307-570 (615)
16 KOG2002 TPR-containing nuclear 99.9 2.3E-19 5E-24 177.2 37.2 547 8-568 161-801 (1018)
17 KOG2002 TPR-containing nuclear 99.9 1.7E-19 3.7E-24 178.1 34.9 532 21-563 138-744 (1018)
18 PRK15174 Vi polysaccharide exp 99.9 1.7E-18 3.8E-23 179.0 37.1 326 200-536 45-386 (656)
19 PRK11788 tetratricopeptide rep 99.9 2.4E-19 5.2E-24 177.1 27.8 267 299-572 71-354 (389)
20 PRK11788 tetratricopeptide rep 99.8 1.2E-18 2.6E-23 172.2 29.1 287 203-530 41-346 (389)
21 TIGR00990 3a0801s09 mitochondr 99.8 1E-17 2.2E-22 174.2 37.3 411 107-534 130-574 (615)
22 PRK10049 pgaA outer membrane p 99.8 3.2E-17 6.9E-22 173.5 41.1 393 110-537 21-462 (765)
23 PRK14574 hmsH outer membrane p 99.8 6E-17 1.3E-21 167.8 40.7 432 80-538 41-520 (822)
24 PRK15174 Vi polysaccharide exp 99.8 9.5E-18 2.1E-22 173.6 34.0 350 208-567 16-383 (656)
25 PRK10049 pgaA outer membrane p 99.8 9.7E-17 2.1E-21 169.9 39.0 381 174-565 23-456 (765)
26 KOG2003 TPR repeat-containing 99.8 1.2E-17 2.7E-22 151.2 23.6 205 343-552 501-710 (840)
27 PRK14574 hmsH outer membrane p 99.8 1.8E-15 3.9E-20 157.0 42.0 430 45-503 38-519 (822)
28 KOG2076 RNA polymerase III tra 99.8 2.5E-15 5.4E-20 148.1 35.4 541 7-548 135-786 (895)
29 KOG0495 HAT repeat protein [RN 99.8 4.5E-14 9.7E-19 134.2 41.3 457 114-585 416-898 (913)
30 KOG2003 TPR repeat-containing 99.7 1.9E-15 4.1E-20 137.2 20.6 270 207-483 429-708 (840)
31 KOG0495 HAT repeat protein [RN 99.7 6.5E-13 1.4E-17 126.4 37.5 451 79-544 412-893 (913)
32 KOG1915 Cell cycle control pro 99.7 7.9E-13 1.7E-17 121.2 34.4 454 72-530 72-584 (677)
33 KOG2076 RNA polymerase III tra 99.7 1.6E-12 3.5E-17 128.7 37.1 514 45-562 142-766 (895)
34 KOG4422 Uncharacterized conser 99.7 4E-12 8.7E-17 115.2 36.6 425 42-495 116-587 (625)
35 KOG1915 Cell cycle control pro 99.7 1.3E-12 2.7E-17 119.9 33.8 427 44-480 75-551 (677)
36 PF13429 TPR_15: Tetratricopep 99.7 2.5E-16 5.4E-21 147.1 9.8 254 303-562 14-274 (280)
37 KOG0547 Translocase of outer m 99.6 6.5E-13 1.4E-17 122.3 27.8 213 343-561 337-562 (606)
38 KOG1155 Anaphase-promoting com 99.6 2.3E-12 4.9E-17 118.0 29.8 327 230-562 159-492 (559)
39 KOG1155 Anaphase-promoting com 99.6 4.8E-11 1E-15 109.5 33.1 310 143-460 172-493 (559)
40 PRK10747 putative protoheme IX 99.6 8.6E-12 1.9E-16 121.9 30.4 281 210-531 97-390 (398)
41 KOG1126 DNA-binding cell divis 99.5 6.8E-13 1.5E-17 127.2 20.7 276 280-565 333-620 (638)
42 KOG1173 Anaphase-promoting com 99.5 3E-11 6.5E-16 113.7 31.1 467 75-559 18-512 (611)
43 PRK10747 putative protoheme IX 99.5 5.5E-12 1.2E-16 123.3 27.5 272 178-495 96-387 (398)
44 KOG1126 DNA-binding cell divis 99.5 8.4E-13 1.8E-17 126.6 19.4 249 311-566 333-587 (638)
45 KOG4422 Uncharacterized conser 99.5 3E-10 6.4E-15 103.3 34.2 422 8-461 113-589 (625)
46 TIGR00540 hemY_coli hemY prote 99.5 3.8E-11 8.2E-16 118.2 31.4 284 208-530 95-398 (409)
47 KOG4318 Bicoid mRNA stability 99.5 1.3E-10 2.8E-15 114.9 33.3 230 5-250 19-286 (1088)
48 KOG0547 Translocase of outer m 99.5 1.7E-10 3.7E-15 106.7 31.5 399 110-533 121-568 (606)
49 PF13429 TPR_15: Tetratricopep 99.5 1.1E-13 2.4E-18 129.3 11.2 248 240-530 13-276 (280)
50 KOG2047 mRNA splicing factor [ 99.5 4E-10 8.6E-15 107.7 34.6 168 74-246 103-292 (835)
51 TIGR00540 hemY_coli hemY prote 99.5 1.3E-11 2.8E-16 121.4 25.9 280 176-495 94-396 (409)
52 KOG3785 Uncharacterized conser 99.5 3E-10 6.5E-15 100.7 31.1 445 49-512 29-505 (557)
53 KOG1173 Anaphase-promoting com 99.5 4.1E-10 9E-15 106.2 32.0 278 265-547 243-534 (611)
54 KOG2376 Signal recognition par 99.5 4.1E-10 8.9E-15 106.7 31.9 445 1-456 1-514 (652)
55 KOG2047 mRNA splicing factor [ 99.5 4E-09 8.7E-14 101.0 38.5 282 268-553 389-711 (835)
56 COG2956 Predicted N-acetylgluc 99.5 4.6E-11 1E-15 104.6 23.5 265 210-512 48-326 (389)
57 COG3071 HemY Uncharacterized e 99.4 5.2E-10 1.1E-14 101.3 29.1 282 210-530 97-389 (400)
58 KOG2376 Signal recognition par 99.4 1.8E-09 3.8E-14 102.6 33.8 453 80-561 19-516 (652)
59 COG2956 Predicted N-acetylgluc 99.4 2.4E-10 5.2E-15 100.2 24.7 292 237-572 38-354 (389)
60 TIGR02521 type_IV_pilW type IV 99.4 3.3E-11 7.1E-16 110.0 20.9 198 366-565 30-232 (234)
61 COG3071 HemY Uncharacterized e 99.4 6.4E-10 1.4E-14 100.7 25.4 276 279-563 97-388 (400)
62 KOG3616 Selective LIM binding 99.4 1.9E-08 4.1E-13 97.9 35.8 282 15-321 593-906 (1636)
63 KOG4318 Bicoid mRNA stability 99.3 7.6E-09 1.7E-13 102.8 32.4 492 38-569 21-598 (1088)
64 KOG1174 Anaphase-promoting com 99.3 6.7E-09 1.4E-13 94.3 29.3 273 263-542 229-511 (564)
65 KOG3785 Uncharacterized conser 99.3 3E-08 6.5E-13 88.3 29.3 439 18-473 29-498 (557)
66 COG3063 PilF Tfp pilus assembl 99.3 5.7E-10 1.2E-14 93.4 16.8 161 401-567 38-204 (250)
67 KOG4162 Predicted calmodulin-b 99.2 2.6E-08 5.6E-13 97.9 30.0 122 437-562 654-780 (799)
68 KOG1129 TPR repeat-containing 99.2 2.5E-10 5.4E-15 100.1 14.6 188 373-564 262-457 (478)
69 KOG3616 Selective LIM binding 99.2 1.5E-07 3.3E-12 91.7 34.7 246 274-560 714-961 (1636)
70 KOG1129 TPR repeat-containing 99.2 3.1E-10 6.8E-15 99.5 15.1 236 300-541 226-468 (478)
71 KOG1127 TPR repeat-containing 99.2 1.5E-08 3.3E-13 101.9 28.8 278 284-566 801-1106(1238)
72 PRK12370 invasion protein regu 99.2 2.7E-09 5.9E-14 109.3 24.2 244 312-566 276-536 (553)
73 KOG1840 Kinesin light chain [C 99.2 1.2E-09 2.5E-14 106.4 20.1 191 372-563 246-477 (508)
74 KOG3617 WD40 and TPR repeat-co 99.2 3.4E-07 7.4E-12 90.6 36.3 243 21-292 738-993 (1416)
75 PF13041 PPR_2: PPR repeat fam 99.2 3.9E-11 8.5E-16 78.0 6.4 50 295-344 1-50 (50)
76 KOG3617 WD40 and TPR repeat-co 99.2 5.1E-08 1.1E-12 96.1 29.2 201 12-225 758-995 (1416)
77 KOG4162 Predicted calmodulin-b 99.2 3.7E-08 7.9E-13 96.8 28.1 366 164-537 321-789 (799)
78 KOG1156 N-terminal acetyltrans 99.2 8.1E-08 1.8E-12 92.6 29.8 146 45-191 11-168 (700)
79 KOG0985 Vesicle coat protein c 99.2 5.7E-07 1.2E-11 90.9 36.3 464 40-556 870-1374(1666)
80 PF13041 PPR_2: PPR repeat fam 99.2 9.2E-11 2E-15 76.3 6.5 50 396-445 1-50 (50)
81 TIGR02521 type_IV_pilW type IV 99.2 1.1E-08 2.4E-13 93.1 22.1 197 297-533 31-234 (234)
82 KOG1156 N-terminal acetyltrans 99.1 8.6E-07 1.9E-11 85.8 34.6 248 75-325 10-282 (700)
83 PRK12370 invasion protein regu 99.1 4.4E-09 9.6E-14 107.7 20.4 210 346-563 275-500 (553)
84 KOG0985 Vesicle coat protein c 99.1 2.5E-05 5.4E-10 79.6 42.8 485 45-557 609-1241(1666)
85 PRK11189 lipoprotein NlpI; Pro 99.1 1.4E-08 3.1E-13 95.0 19.2 217 308-533 37-267 (296)
86 KOG1174 Anaphase-promoting com 99.1 3.5E-06 7.7E-11 77.1 33.1 261 295-563 230-498 (564)
87 KOG1127 TPR repeat-containing 99.1 3.5E-07 7.5E-12 92.5 29.0 150 13-162 494-657 (1238)
88 PF12569 NARP1: NMDA receptor- 99.0 1.7E-07 3.8E-12 92.7 26.2 283 275-564 13-333 (517)
89 PF12569 NARP1: NMDA receptor- 99.0 1.2E-06 2.5E-11 86.9 31.4 424 111-559 11-514 (517)
90 PRK11189 lipoprotein NlpI; Pro 99.0 1.3E-07 2.8E-12 88.6 23.5 91 369-461 66-160 (296)
91 KOG1840 Kinesin light chain [C 99.0 4.2E-09 9.2E-14 102.6 13.6 230 106-359 201-477 (508)
92 KOG1125 TPR repeat-containing 99.0 1.3E-08 2.9E-13 96.7 15.8 191 367-563 319-526 (579)
93 COG3063 PilF Tfp pilus assembl 99.0 1.5E-07 3.2E-12 79.3 18.5 187 373-562 41-233 (250)
94 KOG1914 mRNA cleavage and poly 98.9 4E-06 8.7E-11 79.5 29.0 174 313-487 347-528 (656)
95 KOG0548 Molecular co-chaperone 98.9 5.9E-07 1.3E-11 85.1 23.3 164 374-548 305-472 (539)
96 KOG0548 Molecular co-chaperone 98.9 6.2E-07 1.4E-11 84.9 22.9 215 337-566 229-456 (539)
97 PF04733 Coatomer_E: Coatomer 98.9 3.8E-08 8.2E-13 90.6 13.9 249 275-536 10-270 (290)
98 cd05804 StaR_like StaR_like; a 98.9 3.1E-06 6.8E-11 82.5 28.4 255 305-564 51-335 (355)
99 PF04733 Coatomer_E: Coatomer 98.9 1.7E-07 3.7E-12 86.3 17.0 80 413-496 182-263 (290)
100 KOG0624 dsRNA-activated protei 98.8 8.3E-06 1.8E-10 72.9 25.6 187 344-537 167-376 (504)
101 KOG0624 dsRNA-activated protei 98.8 6.3E-06 1.4E-10 73.6 22.9 305 234-564 37-369 (504)
102 KOG4340 Uncharacterized conser 98.8 4.7E-06 1E-10 72.9 21.3 279 13-294 12-338 (459)
103 KOG4340 Uncharacterized conser 98.7 2.8E-06 6.1E-11 74.3 19.8 281 238-560 13-334 (459)
104 cd05804 StaR_like StaR_like; a 98.7 2E-05 4.4E-10 76.8 28.7 55 302-357 119-173 (355)
105 PRK04841 transcriptional regul 98.7 2.6E-05 5.7E-10 86.4 31.9 318 245-563 384-758 (903)
106 TIGR03302 OM_YfiO outer membra 98.7 1.1E-06 2.5E-11 79.8 17.5 180 366-566 32-233 (235)
107 PRK10370 formate-dependent nit 98.7 1.2E-06 2.7E-11 76.1 16.6 118 446-566 52-174 (198)
108 PRK15359 type III secretion sy 98.7 3.5E-07 7.6E-12 75.1 11.5 108 437-548 28-138 (144)
109 KOG1070 rRNA processing protei 98.7 4.4E-06 9.5E-11 87.8 21.4 233 213-451 1441-1689(1710)
110 KOG1125 TPR repeat-containing 98.6 2.1E-06 4.4E-11 82.2 16.1 138 416-557 412-563 (579)
111 PRK15359 type III secretion sy 98.6 6E-07 1.3E-11 73.7 11.2 106 454-565 14-121 (144)
112 PRK04841 transcriptional regul 98.6 6.8E-05 1.5E-09 83.1 30.0 317 146-462 385-760 (903)
113 COG5010 TadD Flp pilus assembl 98.5 7.4E-06 1.6E-10 70.9 16.0 116 439-557 106-223 (257)
114 KOG1128 Uncharacterized conser 98.5 4.6E-06 1E-10 82.0 16.3 213 336-568 402-619 (777)
115 PRK15179 Vi polysaccharide bio 98.5 7.3E-06 1.6E-10 84.6 18.3 131 397-533 85-219 (694)
116 PLN02789 farnesyltranstransfer 98.5 4.1E-05 8.9E-10 71.7 21.3 224 299-563 39-300 (320)
117 KOG1070 rRNA processing protei 98.5 1.1E-05 2.5E-10 84.8 18.6 199 366-569 1457-1667(1710)
118 PRK10370 formate-dependent nit 98.5 1.4E-05 3E-10 69.6 16.6 154 374-540 23-182 (198)
119 KOG1128 Uncharacterized conser 98.4 6.6E-05 1.4E-09 74.3 22.1 216 263-496 395-614 (777)
120 PRK15363 pathogenicity island 98.4 5.8E-06 1.3E-10 66.5 12.5 96 468-564 34-131 (157)
121 PLN02789 farnesyltranstransfer 98.4 3E-05 6.4E-10 72.6 19.0 191 372-567 42-252 (320)
122 COG5010 TadD Flp pilus assembl 98.4 2E-05 4.3E-10 68.3 16.1 150 373-527 72-227 (257)
123 PF12854 PPR_1: PPR repeat 98.4 4.3E-07 9.4E-12 52.7 3.8 33 230-262 2-34 (34)
124 KOG3060 Uncharacterized conser 98.4 4.6E-05 1E-09 65.5 17.3 169 370-542 55-231 (289)
125 PRK14720 transcript cleavage f 98.4 6.4E-05 1.4E-09 78.6 21.1 147 369-547 118-268 (906)
126 COG4783 Putative Zn-dependent 98.4 6.7E-05 1.5E-09 70.9 19.0 110 444-557 317-429 (484)
127 PF12854 PPR_1: PPR repeat 98.4 6.6E-07 1.4E-11 51.9 3.8 32 464-495 2-33 (34)
128 TIGR03302 OM_YfiO outer membra 98.3 4.5E-05 9.7E-10 69.3 17.6 182 330-533 31-234 (235)
129 KOG3081 Vesicle coat complex C 98.3 0.00037 8.1E-09 60.6 20.8 156 373-536 114-276 (299)
130 TIGR02552 LcrH_SycD type III s 98.3 7.9E-06 1.7E-10 66.8 10.5 91 439-533 23-116 (135)
131 KOG3081 Vesicle coat complex C 98.2 0.00035 7.7E-09 60.7 19.4 115 243-360 116-235 (299)
132 KOG3060 Uncharacterized conser 98.2 0.00013 2.8E-09 62.8 16.3 159 400-564 54-219 (289)
133 PF09295 ChAPs: ChAPs (Chs5p-A 98.2 5.1E-05 1.1E-09 72.5 14.5 125 369-497 171-296 (395)
134 PRK15179 Vi polysaccharide bio 98.2 0.00015 3.2E-09 75.2 18.9 143 362-509 81-230 (694)
135 PF07079 DUF1347: Protein of u 98.1 0.0061 1.3E-07 57.4 26.6 410 145-562 16-521 (549)
136 PF09295 ChAPs: ChAPs (Chs5p-A 98.1 4.2E-05 9.2E-10 73.0 12.8 122 436-563 172-295 (395)
137 KOG2053 Mitochondrial inherita 98.1 0.015 3.4E-07 59.6 38.8 100 54-153 21-128 (932)
138 TIGR02552 LcrH_SycD type III s 98.1 5.3E-05 1.1E-09 61.9 11.9 100 465-565 12-114 (135)
139 PRK14720 transcript cleavage f 98.1 0.00084 1.8E-08 70.6 22.6 280 195-540 29-315 (906)
140 PF09976 TPR_21: Tetratricopep 98.1 0.00019 4.1E-09 59.3 14.5 123 402-528 16-144 (145)
141 KOG1914 mRNA cleavage and poly 98.1 0.014 3E-07 56.4 30.2 418 133-557 18-531 (656)
142 KOG2041 WD40 repeat protein [G 98.0 0.01 2.2E-07 59.0 27.0 218 26-268 678-911 (1189)
143 KOG0553 TPR repeat-containing 98.0 6.3E-05 1.4E-09 66.6 11.0 96 445-544 93-191 (304)
144 KOG2041 WD40 repeat protein [G 98.0 0.013 2.7E-07 58.3 27.1 218 57-299 678-911 (1189)
145 COG4783 Putative Zn-dependent 98.0 0.00099 2.1E-08 63.3 19.1 108 409-522 317-428 (484)
146 TIGR00756 PPR pentatricopeptid 98.0 1.4E-05 2.9E-10 47.3 4.4 34 298-331 1-34 (35)
147 PF09976 TPR_21: Tetratricopep 98.0 0.00013 2.8E-09 60.3 11.8 123 436-561 15-143 (145)
148 TIGR00756 PPR pentatricopeptid 98.0 1.5E-05 3.2E-10 47.1 4.4 35 399-433 1-35 (35)
149 PF13812 PPR_3: Pentatricopept 98.0 1.6E-05 3.5E-10 46.5 4.3 33 298-330 2-34 (34)
150 TIGR02795 tol_pal_ybgF tol-pal 97.9 0.00014 3.1E-09 57.8 10.9 99 438-537 7-111 (119)
151 cd00189 TPR Tetratricopeptide 97.9 9.8E-05 2.1E-09 55.8 9.5 93 471-564 2-96 (100)
152 PF13812 PPR_3: Pentatricopept 97.9 2.5E-05 5.4E-10 45.7 4.4 33 399-431 2-34 (34)
153 COG4235 Cytochrome c biogenesi 97.9 0.0001 2.3E-09 65.7 10.1 111 466-576 152-267 (287)
154 TIGR02795 tol_pal_ybgF tol-pal 97.9 0.00013 2.7E-09 58.1 10.0 96 470-566 3-106 (119)
155 PF14938 SNAP: Soluble NSF att 97.8 0.00092 2E-08 62.3 15.4 206 44-273 37-275 (282)
156 PF12895 Apc3: Anaphase-promot 97.8 5.3E-05 1.1E-09 55.7 5.4 20 475-494 31-50 (84)
157 PF04840 Vps16_C: Vps16, C-ter 97.8 0.022 4.9E-07 53.4 23.7 282 75-389 2-284 (319)
158 PF13414 TPR_11: TPR repeat; P 97.8 5.9E-05 1.3E-09 53.0 5.3 62 500-562 2-64 (69)
159 PF07079 DUF1347: Protein of u 97.8 0.04 8.8E-07 52.2 31.2 124 378-506 390-530 (549)
160 PRK10153 DNA-binding transcrip 97.8 0.0012 2.6E-08 66.4 16.2 140 395-537 334-488 (517)
161 PF12895 Apc3: Anaphase-promot 97.7 1.7E-05 3.6E-10 58.3 2.2 78 482-561 2-83 (84)
162 COG5107 RNA14 Pre-mRNA 3'-end 97.7 0.042 9.2E-07 51.9 25.0 127 334-462 399-531 (660)
163 PLN03088 SGT1, suppressor of 97.7 0.00035 7.6E-09 67.2 11.7 104 441-548 10-116 (356)
164 KOG2053 Mitochondrial inherita 97.7 0.088 1.9E-06 54.4 37.0 205 20-226 18-255 (932)
165 PF04840 Vps16_C: Vps16, C-ter 97.7 0.051 1.1E-06 51.1 25.9 274 44-353 2-283 (319)
166 PRK02603 photosystem I assembl 97.7 0.0012 2.6E-08 56.4 13.0 128 398-550 35-165 (172)
167 COG3898 Uncharacterized membra 97.7 0.048 1E-06 50.6 25.0 268 279-561 97-388 (531)
168 PLN03088 SGT1, suppressor of 97.7 0.0003 6.4E-09 67.7 10.1 89 475-564 8-98 (356)
169 PRK15331 chaperone protein Sic 97.6 0.00053 1.2E-08 55.7 9.5 93 471-564 39-133 (165)
170 PF13432 TPR_16: Tetratricopep 97.6 9.8E-05 2.1E-09 51.1 4.7 50 514-563 9-58 (65)
171 PF13432 TPR_16: Tetratricopep 97.6 0.00017 3.8E-09 49.8 5.7 61 475-536 3-65 (65)
172 KOG1538 Uncharacterized conser 97.6 0.0045 9.7E-08 60.8 16.4 112 185-326 735-846 (1081)
173 COG4700 Uncharacterized protei 97.6 0.005 1.1E-07 50.6 14.0 132 429-563 85-220 (251)
174 PRK02603 photosystem I assembl 97.6 0.0006 1.3E-08 58.2 9.6 82 469-551 35-121 (172)
175 KOG0553 TPR repeat-containing 97.5 0.00022 4.7E-09 63.3 6.6 85 476-561 88-174 (304)
176 CHL00033 ycf3 photosystem I as 97.5 0.00056 1.2E-08 58.2 9.1 91 469-560 35-137 (168)
177 PF05843 Suf: Suppressor of fo 97.5 0.0019 4.1E-08 59.9 13.2 132 399-534 2-139 (280)
178 PF01535 PPR: PPR repeat; Int 97.5 0.00013 2.8E-09 41.5 3.5 31 298-328 1-31 (31)
179 PF10037 MRP-S27: Mitochondria 97.5 0.00093 2E-08 64.3 11.2 127 219-345 50-186 (429)
180 KOG0550 Molecular chaperone (D 97.5 0.0016 3.5E-08 60.3 12.1 77 480-557 260-342 (486)
181 PRK15363 pathogenicity island 97.5 0.0021 4.5E-08 52.1 11.2 93 397-494 34-128 (157)
182 PF14559 TPR_19: Tetratricopep 97.5 0.00012 2.5E-09 51.3 3.7 52 514-565 3-54 (68)
183 cd00189 TPR Tetratricopeptide 97.5 0.00087 1.9E-08 50.4 9.1 88 442-533 9-99 (100)
184 PF13431 TPR_17: Tetratricopep 97.5 5.2E-05 1.1E-09 43.9 1.5 34 524-557 1-34 (34)
185 KOG1130 Predicted G-alpha GTPa 97.5 0.00076 1.6E-08 62.3 9.4 254 307-562 27-341 (639)
186 PF14938 SNAP: Soluble NSF att 97.5 0.0032 6.9E-08 58.7 14.0 130 271-400 119-270 (282)
187 PF01535 PPR: PPR repeat; Int 97.5 0.00017 3.8E-09 40.9 3.5 30 400-429 2-31 (31)
188 PRK10153 DNA-binding transcrip 97.4 0.0031 6.8E-08 63.5 14.2 130 428-562 332-479 (517)
189 COG3898 Uncharacterized membra 97.4 0.1 2.2E-06 48.6 23.8 284 75-365 84-396 (531)
190 PF13414 TPR_11: TPR repeat; P 97.4 0.00033 7.2E-09 49.1 5.1 64 469-533 3-69 (69)
191 PRK10866 outer membrane biogen 97.4 0.028 6E-07 50.8 17.9 171 373-563 38-239 (243)
192 PF13371 TPR_9: Tetratricopept 97.3 0.00069 1.5E-08 48.1 6.2 55 510-565 4-58 (73)
193 KOG1130 Predicted G-alpha GTPa 97.3 0.001 2.2E-08 61.5 8.5 128 334-461 197-343 (639)
194 PRK10866 outer membrane biogen 97.3 0.06 1.3E-06 48.6 19.8 55 440-494 182-237 (243)
195 KOG2280 Vacuolar assembly/sort 97.3 0.14 2.9E-06 52.0 22.8 113 232-355 681-793 (829)
196 PF14559 TPR_19: Tetratricopep 97.3 0.00088 1.9E-08 46.8 6.0 60 445-507 3-64 (68)
197 KOG0550 Molecular chaperone (D 97.3 0.069 1.5E-06 50.1 19.0 265 205-495 57-347 (486)
198 KOG1538 Uncharacterized conser 97.2 0.044 9.5E-07 54.2 18.3 79 340-427 755-846 (1081)
199 PF12688 TPR_5: Tetratrico pep 97.2 0.0036 7.9E-08 48.8 9.2 82 475-557 7-96 (120)
200 PF08579 RPM2: Mitochondrial r 97.2 0.005 1.1E-07 46.2 9.3 79 301-379 29-116 (120)
201 CHL00033 ycf3 photosystem I as 97.2 0.0051 1.1E-07 52.3 11.0 63 399-461 36-100 (168)
202 PF05843 Suf: Suppressor of fo 97.1 0.0068 1.5E-07 56.2 12.0 126 299-426 3-135 (280)
203 COG5107 RNA14 Pre-mRNA 3'-end 97.1 0.25 5.5E-06 47.0 27.8 132 398-534 397-534 (660)
204 PF13281 DUF4071: Domain of un 97.1 0.062 1.3E-06 51.0 17.8 161 371-535 145-338 (374)
205 COG4700 Uncharacterized protei 97.1 0.079 1.7E-06 43.9 15.7 131 395-526 86-217 (251)
206 PRK10803 tol-pal system protei 97.1 0.0045 9.8E-08 56.3 10.0 98 436-534 146-249 (263)
207 PF12688 TPR_5: Tetratrico pep 97.1 0.013 2.9E-07 45.7 11.0 91 404-494 7-100 (120)
208 PRK10803 tol-pal system protei 97.0 0.0082 1.8E-07 54.6 10.6 84 480-564 154-245 (263)
209 PF10037 MRP-S27: Mitochondria 96.9 0.02 4.3E-07 55.5 13.3 95 299-393 68-164 (429)
210 KOG2796 Uncharacterized conser 96.9 0.043 9.4E-07 48.0 13.8 140 400-540 179-323 (366)
211 PF08579 RPM2: Mitochondrial r 96.9 0.013 2.9E-07 44.0 8.9 77 404-481 31-116 (120)
212 PF13371 TPR_9: Tetratricopept 96.8 0.0034 7.4E-08 44.5 5.8 63 476-539 2-66 (73)
213 PF13525 YfiO: Outer membrane 96.8 0.055 1.2E-06 47.5 14.2 165 373-557 11-199 (203)
214 PF13428 TPR_14: Tetratricopep 96.8 0.0019 4.1E-08 40.2 3.5 41 503-544 3-43 (44)
215 PF06239 ECSIT: Evolutionarily 96.8 0.054 1.2E-06 46.4 12.9 117 329-460 44-166 (228)
216 PLN03098 LPA1 LOW PSII ACCUMUL 96.8 0.0058 1.3E-07 58.5 8.0 97 468-568 74-177 (453)
217 KOG2280 Vacuolar assembly/sort 96.8 0.81 1.8E-05 46.7 25.8 314 47-389 442-792 (829)
218 KOG2796 Uncharacterized conser 96.7 0.16 3.4E-06 44.7 15.4 136 298-435 178-321 (366)
219 COG4235 Cytochrome c biogenesi 96.6 0.081 1.8E-06 47.8 13.7 102 430-535 153-260 (287)
220 KOG0543 FKBP-type peptidyl-pro 96.5 0.017 3.7E-07 54.0 9.4 94 470-564 258-354 (397)
221 PRK11906 transcriptional regul 96.5 0.022 4.9E-07 54.7 10.3 156 399-559 252-430 (458)
222 COG3118 Thioredoxin domain-con 96.5 0.087 1.9E-06 47.4 12.9 119 441-564 142-265 (304)
223 PF06239 ECSIT: Evolutionarily 96.4 0.033 7.2E-07 47.6 9.4 89 294-382 44-153 (228)
224 PRK09687 putative lyase; Provi 96.3 0.89 1.9E-05 42.1 23.4 227 102-340 35-275 (280)
225 PF13525 YfiO: Outer membrane 96.3 0.63 1.4E-05 40.8 17.6 50 439-488 147-197 (203)
226 PRK09687 putative lyase; Provi 96.3 0.94 2E-05 41.9 21.6 236 31-276 26-277 (280)
227 PF13424 TPR_12: Tetratricopep 96.2 0.0054 1.2E-07 44.2 3.5 59 471-530 7-74 (78)
228 PF13424 TPR_12: Tetratricopep 96.2 0.0057 1.2E-07 44.0 3.6 60 502-562 6-72 (78)
229 PF13512 TPR_18: Tetratricopep 96.2 0.13 2.8E-06 41.2 11.1 50 445-494 22-72 (142)
230 PF03704 BTAD: Bacterial trans 96.1 0.015 3.3E-07 48.0 6.2 68 503-571 64-136 (146)
231 PF10345 Cohesin_load: Cohesin 96.1 2.3 5E-05 44.7 25.8 49 515-563 547-604 (608)
232 PRK11906 transcriptional regul 96.0 0.3 6.5E-06 47.3 14.8 110 449-559 274-395 (458)
233 KOG0543 FKBP-type peptidyl-pro 96.0 0.023 4.9E-07 53.2 7.1 88 476-564 215-319 (397)
234 KOG1258 mRNA processing protei 96.0 2 4.3E-05 43.0 26.2 181 366-550 296-489 (577)
235 KOG2114 Vacuolar assembly/sort 96.0 2.5 5.3E-05 44.0 24.5 54 372-425 710-763 (933)
236 PLN03098 LPA1 LOW PSII ACCUMUL 95.9 0.042 9.2E-07 52.8 8.7 62 432-496 74-139 (453)
237 PF13281 DUF4071: Domain of un 95.9 0.4 8.6E-06 45.7 14.8 31 397-427 304-334 (374)
238 PF08631 SPO22: Meiosis protei 95.8 1.7 3.6E-05 40.4 21.3 123 309-433 47-192 (278)
239 PRK15331 chaperone protein Sic 95.7 0.28 6.1E-06 40.3 11.2 91 407-500 46-136 (165)
240 PF13512 TPR_18: Tetratricopep 95.6 0.2 4.3E-06 40.1 9.9 82 469-551 10-99 (142)
241 KOG1585 Protein required for f 95.6 0.72 1.6E-05 40.3 13.7 87 471-559 152-250 (308)
242 COG1729 Uncharacterized protei 95.6 0.094 2E-06 46.7 8.9 89 445-534 153-247 (262)
243 KOG4555 TPR repeat-containing 95.5 0.13 2.8E-06 39.8 8.2 82 478-560 52-139 (175)
244 PF03704 BTAD: Bacterial trans 95.5 0.11 2.3E-06 42.9 8.8 55 404-459 68-122 (146)
245 PF12921 ATP13: Mitochondrial 95.5 0.15 3.3E-06 40.3 8.9 48 464-511 47-98 (126)
246 COG4785 NlpI Lipoprotein NlpI, 95.4 0.95 2.1E-05 38.8 13.7 163 395-566 96-267 (297)
247 PF00515 TPR_1: Tetratricopept 95.4 0.038 8.2E-07 31.9 4.0 32 502-534 2-33 (34)
248 PF07719 TPR_2: Tetratricopept 95.3 0.056 1.2E-06 31.1 4.7 32 503-535 3-34 (34)
249 PF02259 FAT: FAT domain; Int 95.3 3 6.6E-05 40.4 19.9 150 396-549 144-305 (352)
250 KOG1941 Acetylcholine receptor 95.3 0.18 4E-06 46.4 9.9 124 438-562 127-273 (518)
251 PRK11619 lytic murein transgly 95.3 4.8 0.0001 42.3 31.1 321 176-529 43-373 (644)
252 KOG1258 mRNA processing protei 95.2 3.8 8.1E-05 41.1 28.3 398 30-444 31-486 (577)
253 PRK13800 putative oxidoreducta 95.2 6.2 0.00013 43.8 23.5 253 63-325 625-880 (897)
254 COG0457 NrfG FOG: TPR repeat [ 95.2 2.2 4.7E-05 38.2 24.2 218 311-533 37-267 (291)
255 KOG1941 Acetylcholine receptor 95.2 0.33 7.2E-06 44.8 11.2 120 341-460 131-273 (518)
256 PF10300 DUF3808: Protein of u 95.2 0.78 1.7E-05 46.1 15.3 118 411-530 246-375 (468)
257 COG1729 Uncharacterized protei 95.2 0.32 6.9E-06 43.5 10.9 57 439-495 184-241 (262)
258 KOG2610 Uncharacterized conser 95.1 0.66 1.4E-05 42.5 12.8 45 381-425 117-164 (491)
259 COG3118 Thioredoxin domain-con 95.1 1.8 3.9E-05 39.3 15.1 175 385-562 121-299 (304)
260 KOG1920 IkappaB kinase complex 95.0 6.9 0.00015 42.7 22.5 117 370-499 911-1029(1265)
261 PF04053 Coatomer_WDAD: Coatom 95.0 1.4 3E-05 43.8 15.9 70 246-322 329-398 (443)
262 PF04053 Coatomer_WDAD: Coatom 94.9 1.8 3.9E-05 43.0 16.3 157 207-394 271-429 (443)
263 PF10300 DUF3808: Protein of u 94.8 1.3 2.7E-05 44.7 15.5 160 401-564 191-375 (468)
264 PF09205 DUF1955: Domain of un 94.8 1.6 3.4E-05 34.2 13.8 141 408-568 12-152 (161)
265 COG4105 ComL DNA uptake lipopr 94.6 3.1 6.7E-05 37.1 19.4 59 507-566 173-234 (254)
266 PRK13800 putative oxidoreducta 94.6 9.3 0.0002 42.4 24.4 254 92-360 623-880 (897)
267 smart00299 CLH Clathrin heavy 94.5 2.2 4.8E-05 34.7 14.0 126 402-547 11-136 (140)
268 PF12921 ATP13: Mitochondrial 94.4 0.32 6.9E-06 38.5 8.2 80 398-477 2-96 (126)
269 PF04184 ST7: ST7 protein; In 94.3 2.7 5.9E-05 41.2 15.3 96 437-533 263-377 (539)
270 KOG1585 Protein required for f 94.2 3.6 7.9E-05 36.2 14.8 23 300-322 94-116 (308)
271 KOG2610 Uncharacterized conser 94.1 0.47 1E-05 43.4 9.4 161 408-572 113-283 (491)
272 KOG1464 COP9 signalosome, subu 94.0 4.3 9.4E-05 36.2 18.2 221 300-527 68-328 (440)
273 KOG2066 Vacuolar assembly/sort 93.9 9.2 0.0002 39.8 24.8 99 49-147 363-467 (846)
274 KOG1920 IkappaB kinase complex 93.9 12 0.00026 41.0 23.4 102 405-525 915-1022(1265)
275 KOG4234 TPR repeat-containing 93.8 0.33 7.1E-06 40.9 7.3 128 440-568 102-236 (271)
276 KOG1464 COP9 signalosome, subu 93.7 1.6 3.5E-05 38.7 11.7 187 380-567 40-263 (440)
277 COG0457 NrfG FOG: TPR repeat [ 93.4 5.4 0.00012 35.5 24.3 191 367-562 59-262 (291)
278 COG2976 Uncharacterized protei 93.4 2.7 5.9E-05 35.6 12.0 114 416-533 70-190 (207)
279 smart00299 CLH Clathrin heavy 93.4 3.6 7.9E-05 33.4 14.0 38 48-85 13-53 (140)
280 KOG4555 TPR repeat-containing 93.4 0.26 5.6E-06 38.2 5.6 58 510-568 52-110 (175)
281 PF09613 HrpB1_HrpK: Bacterial 93.2 2.1 4.6E-05 35.1 10.9 108 444-557 21-130 (160)
282 KOG4234 TPR repeat-containing 93.0 1.3 2.8E-05 37.5 9.5 94 405-502 102-202 (271)
283 PF09205 DUF1955: Domain of un 92.9 3.8 8.2E-05 32.2 13.5 61 401-462 89-149 (161)
284 PF13181 TPR_8: Tetratricopept 92.8 0.24 5.2E-06 28.4 3.9 31 503-534 3-33 (34)
285 PF00637 Clathrin: Region in C 92.7 0.019 4.1E-07 47.2 -1.4 128 338-484 13-140 (143)
286 PF09613 HrpB1_HrpK: Bacterial 91.7 1.1 2.3E-05 36.8 7.5 81 471-551 9-93 (160)
287 KOG3941 Intermediate in Toll s 91.6 1.7 3.7E-05 38.9 9.0 89 295-383 65-174 (406)
288 TIGR02561 HrpB1_HrpK type III 91.5 1.3 2.8E-05 35.7 7.5 95 471-567 9-108 (153)
289 PF13431 TPR_17: Tetratricopep 91.3 0.18 4E-06 29.0 2.1 24 466-489 9-33 (34)
290 PF13176 TPR_7: Tetratricopept 91.2 0.4 8.7E-06 28.0 3.6 25 504-529 2-26 (36)
291 KOG2066 Vacuolar assembly/sort 91.2 22 0.00047 37.3 26.4 72 143-214 364-440 (846)
292 PF10602 RPN7: 26S proteasome 91.1 1 2.2E-05 38.4 7.3 96 167-262 37-140 (177)
293 KOG4648 Uncharacterized conser 91.1 0.62 1.3E-05 42.8 6.1 91 442-536 106-199 (536)
294 PF10602 RPN7: 26S proteasome 91.0 4.4 9.4E-05 34.5 10.9 94 299-394 38-140 (177)
295 PF13428 TPR_14: Tetratricopep 90.7 1 2.2E-05 27.7 5.3 27 400-426 3-29 (44)
296 TIGR02270 conserved hypothetic 90.5 19 0.00041 35.5 20.9 170 49-222 45-216 (410)
297 PRK15180 Vi polysaccharide bio 90.4 2.9 6.2E-05 40.5 10.0 122 409-535 300-424 (831)
298 PF13176 TPR_7: Tetratricopept 90.4 0.44 9.5E-06 27.8 3.2 24 471-494 1-24 (36)
299 TIGR02270 conserved hypothetic 89.9 21 0.00046 35.1 22.2 185 155-354 89-274 (410)
300 PF00637 Clathrin: Region in C 89.9 0.81 1.8E-05 37.5 5.6 86 203-294 13-98 (143)
301 KOG3941 Intermediate in Toll s 89.6 3.8 8.3E-05 36.8 9.4 98 387-485 54-174 (406)
302 COG3629 DnrI DNA-binding trans 89.4 1.7 3.7E-05 39.7 7.5 59 471-530 155-215 (280)
303 TIGR02561 HrpB1_HrpK type III 89.4 10 0.00022 30.7 10.9 70 445-517 22-93 (153)
304 PRK11619 lytic murein transgly 89.3 32 0.00069 36.4 40.5 243 310-570 254-510 (644)
305 KOG1586 Protein required for f 89.3 8.5 0.00018 33.8 11.0 23 514-536 166-188 (288)
306 PF07035 Mic1: Colon cancer-as 89.3 12 0.00026 31.3 12.7 125 229-361 23-149 (167)
307 COG3629 DnrI DNA-binding trans 89.3 2.4 5.3E-05 38.6 8.4 72 368-439 154-233 (280)
308 KOG0890 Protein kinase of the 89.2 58 0.0012 39.2 23.3 120 202-325 1388-1511(2382)
309 COG4105 ComL DNA uptake lipopr 88.9 17 0.00036 32.6 17.6 73 305-377 42-116 (254)
310 PF13170 DUF4003: Protein of u 88.9 20 0.00044 33.5 15.2 140 313-483 78-231 (297)
311 COG4649 Uncharacterized protei 88.4 6.8 0.00015 32.5 9.4 56 377-432 142-201 (221)
312 PF13174 TPR_6: Tetratricopept 87.5 1.3 2.8E-05 24.9 3.8 27 507-534 6-32 (33)
313 PF13374 TPR_10: Tetratricopep 87.3 1.4 3.1E-05 26.5 4.2 27 503-530 4-30 (42)
314 KOG4507 Uncharacterized conser 87.2 2.8 6E-05 41.8 7.8 101 443-547 617-721 (886)
315 PF07721 TPR_4: Tetratricopept 87.2 0.83 1.8E-05 24.3 2.6 24 537-560 2-25 (26)
316 TIGR02508 type_III_yscG type I 87.1 8.9 0.00019 28.5 8.4 60 274-336 47-106 (115)
317 PF07035 Mic1: Colon cancer-as 87.0 14 0.0003 30.9 10.8 115 40-158 27-143 (167)
318 KOG0890 Protein kinase of the 87.0 79 0.0017 38.2 27.0 310 240-566 1388-1732(2382)
319 KOG2114 Vacuolar assembly/sort 86.7 47 0.001 35.3 24.8 174 138-323 337-516 (933)
320 COG2909 MalT ATP-dependent tra 86.4 51 0.0011 35.3 19.2 50 410-460 470-524 (894)
321 KOG4648 Uncharacterized conser 86.2 1.3 2.9E-05 40.7 4.8 81 476-557 104-186 (536)
322 KOG0276 Vesicle coat complex C 86.1 13 0.00029 37.4 11.7 98 278-392 649-746 (794)
323 PF02259 FAT: FAT domain; Int 85.9 35 0.00075 33.0 17.8 59 368-426 147-212 (352)
324 cd00923 Cyt_c_Oxidase_Va Cytoc 85.7 4.7 0.0001 29.7 6.4 62 413-476 22-83 (103)
325 PRK12798 chemotaxis protein; R 85.5 37 0.0008 33.0 20.2 181 380-564 125-323 (421)
326 PF08631 SPO22: Meiosis protei 85.2 32 0.0007 32.0 22.6 61 400-462 86-150 (278)
327 PF02284 COX5A: Cytochrome c o 85.1 3.9 8.5E-05 30.4 5.8 61 415-477 27-87 (108)
328 PF00515 TPR_1: Tetratricopept 84.7 2.4 5.2E-05 24.1 4.0 29 198-226 2-30 (34)
329 PF07721 TPR_4: Tetratricopept 84.1 1.9 4.1E-05 22.9 3.0 22 472-493 4-25 (26)
330 KOG0276 Vesicle coat complex C 83.9 18 0.00039 36.6 11.4 47 176-224 647-693 (794)
331 TIGR03504 FimV_Cterm FimV C-te 83.3 2.1 4.5E-05 26.4 3.3 27 540-566 3-29 (44)
332 PF11207 DUF2989: Protein of u 82.5 13 0.00029 31.9 8.9 74 414-488 122-197 (203)
333 smart00028 TPR Tetratricopepti 82.0 3.6 7.7E-05 22.2 4.1 29 504-533 4-32 (34)
334 PF07719 TPR_2: Tetratricopept 82.0 3.5 7.6E-05 23.2 4.0 28 199-226 3-30 (34)
335 KOG1586 Protein required for f 81.8 36 0.00079 30.1 13.8 19 516-534 209-227 (288)
336 KOG4642 Chaperone-dependent E3 81.8 4.5 9.8E-05 35.5 5.9 118 442-562 19-143 (284)
337 KOG1308 Hsp70-interacting prot 81.7 1 2.3E-05 41.5 2.3 108 445-557 126-236 (377)
338 PF06552 TOM20_plant: Plant sp 81.5 11 0.00025 31.6 7.9 45 518-569 96-140 (186)
339 COG4455 ImpE Protein of avirul 81.5 36 0.00078 29.8 12.3 124 400-534 3-137 (273)
340 PF14853 Fis1_TPR_C: Fis1 C-te 81.3 3.8 8.3E-05 26.5 4.1 31 507-538 7-37 (53)
341 cd00923 Cyt_c_Oxidase_Va Cytoc 81.2 11 0.00024 27.8 6.7 60 313-374 23-83 (103)
342 COG3947 Response regulator con 80.8 41 0.00088 30.9 11.5 49 275-323 288-339 (361)
343 PF14561 TPR_20: Tetratricopep 80.4 2.6 5.6E-05 31.0 3.6 49 503-552 24-74 (90)
344 PF04910 Tcf25: Transcriptiona 80.0 39 0.00085 32.7 12.4 55 509-564 111-167 (360)
345 PF11207 DUF2989: Protein of u 79.7 14 0.0003 31.8 8.1 75 480-556 118-198 (203)
346 PF06552 TOM20_plant: Plant sp 79.7 5.6 0.00012 33.4 5.6 60 450-512 52-124 (186)
347 KOG0551 Hsp90 co-chaperone CNS 79.6 9.9 0.00021 35.3 7.5 92 469-561 81-178 (390)
348 PF04184 ST7: ST7 protein; In 79.5 71 0.0015 31.9 18.2 58 402-460 263-322 (539)
349 PF13374 TPR_10: Tetratricopep 78.7 5.4 0.00012 23.8 4.3 27 400-426 4-30 (42)
350 PF02284 COX5A: Cytochrome c o 78.5 14 0.0003 27.7 6.6 60 315-375 28-87 (108)
351 COG4785 NlpI Lipoprotein NlpI, 77.9 6.1 0.00013 34.1 5.4 124 427-557 57-187 (297)
352 COG1747 Uncharacterized N-term 77.7 80 0.0017 31.6 20.6 169 370-546 69-249 (711)
353 PRK10941 hypothetical protein; 76.5 14 0.0003 33.9 7.8 52 505-557 185-236 (269)
354 KOG2300 Uncharacterized conser 76.3 86 0.0019 31.2 31.8 381 15-426 11-473 (629)
355 PF13174 TPR_6: Tetratricopept 75.5 5.1 0.00011 22.3 3.3 26 201-226 4-29 (33)
356 KOG4570 Uncharacterized conser 75.4 26 0.00056 32.4 8.9 96 366-462 63-164 (418)
357 COG4455 ImpE Protein of avirul 75.4 56 0.0012 28.6 12.1 72 436-510 4-81 (273)
358 KOG4279 Serine/threonine prote 75.2 1.1E+02 0.0024 32.3 13.9 183 351-537 182-401 (1226)
359 TIGR02508 type_III_yscG type I 75.1 32 0.0007 25.7 9.1 61 374-437 46-106 (115)
360 PF10579 Rapsyn_N: Rapsyn N-te 74.7 7.4 0.00016 27.5 4.2 44 514-557 18-64 (80)
361 PF10345 Cohesin_load: Cohesin 74.6 1.2E+02 0.0026 32.1 24.8 159 196-358 58-251 (608)
362 PF13181 TPR_8: Tetratricopept 74.1 7 0.00015 22.0 3.6 28 199-226 3-30 (34)
363 KOG0545 Aryl-hydrocarbon recep 73.8 12 0.00027 33.0 6.3 44 514-557 242-285 (329)
364 PF04097 Nic96: Nup93/Nic96; 73.6 1.3E+02 0.0028 31.9 21.4 23 474-496 419-441 (613)
365 KOG2063 Vacuolar assembly/sort 73.3 86 0.0019 34.2 13.5 27 299-325 506-532 (877)
366 PF07163 Pex26: Pex26 protein; 73.1 38 0.00083 30.8 9.3 87 304-390 90-181 (309)
367 KOG2300 Uncharacterized conser 73.0 1E+02 0.0023 30.6 26.6 61 199-260 90-152 (629)
368 KOG4642 Chaperone-dependent E3 72.1 56 0.0012 29.1 9.8 98 408-510 20-126 (284)
369 PF13929 mRNA_stabil: mRNA sta 72.1 82 0.0018 29.1 17.1 262 173-447 3-292 (292)
370 COG4649 Uncharacterized protei 71.9 59 0.0013 27.3 15.2 120 408-530 68-195 (221)
371 PF10579 Rapsyn_N: Rapsyn N-te 71.4 8.4 0.00018 27.2 3.9 47 445-491 18-65 (80)
372 TIGR03504 FimV_Cterm FimV C-te 71.3 9.5 0.00021 23.5 3.7 24 404-427 5-28 (44)
373 KOG2063 Vacuolar assembly/sort 70.3 1.7E+02 0.0038 32.0 15.6 56 14-69 310-373 (877)
374 cd08819 CARD_MDA5_2 Caspase ac 70.2 20 0.00044 25.9 5.7 60 156-216 23-85 (88)
375 KOG0376 Serine-threonine phosp 70.1 3.7 7.9E-05 40.0 2.6 95 440-538 11-108 (476)
376 PF04190 DUF410: Protein of un 69.9 90 0.002 28.6 15.0 159 278-462 2-170 (260)
377 PRK15180 Vi polysaccharide bio 68.2 1.3E+02 0.0028 29.8 22.8 92 481-572 710-812 (831)
378 smart00386 HAT HAT (Half-A-TPR 67.6 9.7 0.00021 20.9 3.3 29 516-544 1-29 (33)
379 KOG4077 Cytochrome c oxidase, 67.1 27 0.00058 27.3 6.1 59 416-476 67-125 (149)
380 KOG2034 Vacuolar sorting prote 66.5 2E+02 0.0042 31.2 24.1 167 142-323 365-556 (911)
381 PF07163 Pex26: Pex26 protein; 66.4 61 0.0013 29.6 9.1 21 405-425 125-145 (309)
382 PRK10941 hypothetical protein; 65.0 24 0.00053 32.4 6.8 68 472-540 184-253 (269)
383 PF09670 Cas_Cas02710: CRISPR- 64.6 96 0.0021 30.4 11.2 18 410-427 143-160 (379)
384 PF13934 ELYS: Nuclear pore co 64.1 1.1E+02 0.0024 27.4 12.7 101 75-177 78-183 (226)
385 PF09986 DUF2225: Uncharacteri 63.9 33 0.00072 30.3 7.2 30 537-566 166-195 (214)
386 PF10366 Vps39_1: Vacuolar sor 63.7 48 0.001 25.4 7.1 27 299-325 41-67 (108)
387 KOG4570 Uncharacterized conser 62.3 46 0.00099 30.9 7.7 96 228-324 57-162 (418)
388 PF13762 MNE1: Mitochondrial s 62.2 57 0.0012 26.6 7.5 76 371-446 43-128 (145)
389 cd08819 CARD_MDA5_2 Caspase ac 61.6 31 0.00067 25.0 5.2 38 54-92 48-85 (88)
390 KOG3824 Huntingtin interacting 61.2 14 0.0003 33.9 4.3 61 480-540 127-188 (472)
391 KOG0686 COP9 signalosome, subu 60.2 1.7E+02 0.0038 28.4 13.6 57 269-325 153-215 (466)
392 KOG3364 Membrane protein invol 60.1 81 0.0018 25.3 7.7 70 466-536 29-105 (149)
393 KOG2422 Uncharacterized conser 60.1 1.5E+02 0.0032 30.4 11.2 119 409-528 249-404 (665)
394 PF11846 DUF3366: Domain of un 59.7 17 0.00036 31.6 4.7 36 497-533 140-175 (193)
395 COG1747 Uncharacterized N-term 59.1 2.1E+02 0.0044 29.0 20.4 48 448-495 184-231 (711)
396 KOG0991 Replication factor C, 58.9 1.2E+02 0.0026 27.1 9.2 38 395-433 236-273 (333)
397 PF04097 Nic96: Nup93/Nic96; 58.6 2.5E+02 0.0054 29.8 25.3 22 479-500 515-536 (613)
398 PF11846 DUF3366: Domain of un 58.4 29 0.00062 30.1 5.9 33 464-496 139-171 (193)
399 PF09477 Type_III_YscG: Bacter 58.3 81 0.0017 24.0 7.6 51 275-327 49-99 (116)
400 PF10255 Paf67: RNA polymerase 58.2 45 0.00099 32.6 7.5 22 109-130 127-148 (404)
401 COG2976 Uncharacterized protei 57.4 1.3E+02 0.0028 26.0 14.3 55 406-462 134-188 (207)
402 KOG2471 TPR repeat-containing 56.6 1.9E+02 0.0042 28.9 11.1 36 477-512 343-380 (696)
403 COG5159 RPN6 26S proteasome re 56.6 1.6E+02 0.0035 27.0 12.3 51 303-353 9-66 (421)
404 PF12862 Apc5: Anaphase-promot 56.6 36 0.00079 25.2 5.4 49 514-562 10-67 (94)
405 KOG1550 Extracellular protein 56.5 2.6E+02 0.0055 29.3 16.1 114 448-567 308-428 (552)
406 KOG1550 Extracellular protein 55.8 2.6E+02 0.0057 29.2 21.0 79 484-565 454-538 (552)
407 PF00244 14-3-3: 14-3-3 protei 55.6 1.6E+02 0.0034 26.6 11.3 57 302-358 6-63 (236)
408 KOG3807 Predicted membrane pro 55.4 1.2E+02 0.0025 28.5 9.1 18 520-537 380-397 (556)
409 COG3947 Response regulator con 54.3 49 0.0011 30.4 6.4 55 504-559 282-336 (361)
410 PF10255 Paf67: RNA polymerase 53.8 40 0.00087 33.0 6.4 92 40-131 73-191 (404)
411 PF09477 Type_III_YscG: Bacter 52.9 1E+02 0.0022 23.5 8.4 54 373-428 46-99 (116)
412 KOG0292 Vesicle coat complex C 52.8 24 0.00052 37.5 4.9 28 469-496 672-699 (1202)
413 KOG1498 26S proteasome regulat 51.8 2.4E+02 0.0051 27.4 12.2 114 473-587 135-263 (439)
414 PF11768 DUF3312: Protein of u 51.5 2.5E+02 0.0053 28.8 11.3 23 372-394 413-435 (545)
415 PF04910 Tcf25: Transcriptiona 50.8 2.5E+02 0.0053 27.4 14.8 122 232-358 37-165 (360)
416 PF08311 Mad3_BUB1_I: Mad3/BUB 50.7 1.3E+02 0.0027 24.0 8.7 43 416-458 81-124 (126)
417 COG0790 FOG: TPR repeat, SEL1 50.5 2.1E+02 0.0047 26.6 15.9 17 517-533 206-222 (292)
418 COG4976 Predicted methyltransf 50.4 29 0.00063 30.5 4.3 60 478-538 4-65 (287)
419 PF12862 Apc5: Anaphase-promot 49.6 86 0.0019 23.2 6.5 17 245-261 51-67 (94)
420 PRK10564 maltose regulon perip 49.3 33 0.00071 31.7 4.7 44 295-338 254-298 (303)
421 PF14863 Alkyl_sulf_dimr: Alky 49.3 70 0.0015 26.0 6.2 65 485-553 57-121 (141)
422 KOG4507 Uncharacterized conser 48.5 1.1E+02 0.0023 31.4 8.3 130 430-563 568-704 (886)
423 cd08326 CARD_CASP9 Caspase act 48.3 48 0.001 24.0 4.6 58 157-214 21-78 (84)
424 KOG2034 Vacuolar sorting prote 48.3 4E+02 0.0087 29.1 23.8 68 243-314 366-433 (911)
425 KOG0686 COP9 signalosome, subu 47.9 2.8E+02 0.006 27.1 12.8 57 369-425 152-214 (466)
426 PRK13342 recombination factor 47.8 3E+02 0.0065 27.5 12.6 45 300-344 230-277 (413)
427 COG4976 Predicted methyltransf 47.4 47 0.001 29.3 5.1 57 442-501 4-62 (287)
428 KOG4521 Nuclear pore complex, 46.1 3.2E+02 0.0069 30.9 11.8 147 207-353 930-1123(1480)
429 PF00244 14-3-3: 14-3-3 protei 46.0 2.2E+02 0.0047 25.7 9.5 162 404-566 7-199 (236)
430 KOG2396 HAT (Half-A-TPR) repea 45.1 3.4E+02 0.0074 27.4 29.3 240 314-563 299-558 (568)
431 PRK13184 pknD serine/threonine 44.1 5.1E+02 0.011 29.1 22.0 321 200-530 478-868 (932)
432 PF11663 Toxin_YhaV: Toxin wit 44.0 29 0.00063 27.6 3.1 33 408-442 105-137 (140)
433 PRK13342 recombination factor 43.6 3.5E+02 0.0075 27.0 14.1 43 401-443 230-275 (413)
434 KOG4521 Nuclear pore complex, 43.2 5.5E+02 0.012 29.2 14.3 58 436-495 986-1047(1480)
435 KOG4077 Cytochrome c oxidase, 43.1 1.3E+02 0.0028 23.8 6.3 37 496-533 79-115 (149)
436 KOG2396 HAT (Half-A-TPR) repea 42.9 3.7E+02 0.0081 27.2 28.2 105 388-495 449-556 (568)
437 COG2909 MalT ATP-dependent tra 42.8 4.9E+02 0.011 28.5 25.8 219 275-494 424-684 (894)
438 PF10366 Vps39_1: Vacuolar sor 42.8 63 0.0014 24.8 4.8 26 75-100 41-66 (108)
439 PF04190 DUF410: Protein of un 42.4 2.8E+02 0.006 25.5 15.7 30 264-293 88-117 (260)
440 PF08311 Mad3_BUB1_I: Mad3/BUB 42.0 1.8E+02 0.0038 23.1 7.5 43 451-494 81-124 (126)
441 PF06957 COPI_C: Coatomer (COP 41.8 2.3E+02 0.0049 28.2 9.4 41 492-533 289-331 (422)
442 PF07720 TPR_3: Tetratricopept 41.4 73 0.0016 18.6 4.7 25 508-533 8-34 (36)
443 PF11848 DUF3368: Domain of un 41.3 90 0.002 19.6 5.0 34 408-441 12-45 (48)
444 KOG3824 Huntingtin interacting 41.2 31 0.00068 31.7 3.3 56 444-502 127-184 (472)
445 cd00280 TRFH Telomeric Repeat 40.4 2.3E+02 0.0049 24.3 7.8 25 510-536 120-144 (200)
446 PF02184 HAT: HAT (Half-A-TPR) 40.3 67 0.0014 18.2 3.3 26 517-543 2-27 (32)
447 PF14689 SPOB_a: Sensor_kinase 39.1 44 0.00095 22.5 3.1 21 440-460 30-50 (62)
448 COG0735 Fur Fe2+/Zn2+ uptake r 39.0 1.7E+02 0.0037 23.9 7.1 62 319-381 8-69 (145)
449 KOG3364 Membrane protein invol 39.0 1E+02 0.0022 24.8 5.3 46 448-495 50-97 (149)
450 COG1413 FOG: HEAT repeat [Ener 37.4 3.8E+02 0.0082 25.6 23.8 112 71-182 86-210 (335)
451 COG2912 Uncharacterized conser 37.3 1.1E+02 0.0023 28.0 6.1 53 507-560 187-239 (269)
452 PF13762 MNE1: Mitochondrial s 36.8 2.4E+02 0.0051 23.1 9.1 53 295-347 77-130 (145)
453 COG4259 Uncharacterized protei 36.7 1.8E+02 0.0039 21.8 6.2 24 471-494 74-97 (121)
454 cd00280 TRFH Telomeric Repeat 36.5 1.5E+02 0.0033 25.3 6.3 18 478-495 120-137 (200)
455 PF14853 Fis1_TPR_C: Fis1 C-te 36.1 1.2E+02 0.0026 19.6 5.5 36 203-243 7-42 (53)
456 PF09986 DUF2225: Uncharacteri 35.8 2.4E+02 0.0052 25.0 8.0 65 469-533 118-196 (214)
457 PF14689 SPOB_a: Sensor_kinase 35.7 59 0.0013 21.9 3.3 21 203-223 29-49 (62)
458 KOG0292 Vesicle coat complex C 35.3 2.2E+02 0.0047 30.9 8.5 161 372-568 625-785 (1202)
459 KOG2581 26S proteasome regulat 35.3 4.4E+02 0.0096 25.9 14.2 24 472-495 212-235 (493)
460 cd08332 CARD_CASP2 Caspase act 34.3 1.2E+02 0.0025 22.4 4.9 48 164-211 32-79 (90)
461 KOG4279 Serine/threonine prote 34.2 4.8E+02 0.01 28.0 10.4 44 375-427 352-395 (1226)
462 COG4941 Predicted RNA polymera 33.9 4.3E+02 0.0092 25.2 11.0 116 414-534 272-397 (415)
463 PF13170 DUF4003: Protein of u 33.8 4.1E+02 0.0089 25.0 19.9 135 414-551 78-232 (297)
464 PRK10564 maltose regulon perip 33.3 1E+02 0.0022 28.7 5.3 40 398-437 257-296 (303)
465 TIGR02710 CRISPR-associated pr 33.0 4.8E+02 0.01 25.6 10.0 26 407-432 139-164 (380)
466 KOG2758 Translation initiation 32.3 4.4E+02 0.0095 24.9 12.8 78 453-530 112-195 (432)
467 cd08326 CARD_CASP9 Caspase act 32.0 1.2E+02 0.0026 22.0 4.6 54 35-88 23-76 (84)
468 PF11817 Foie-gras_1: Foie gra 31.8 1.2E+02 0.0026 27.6 5.7 24 472-495 181-204 (247)
469 PF10475 DUF2450: Protein of u 31.5 4.4E+02 0.0096 24.7 9.9 163 119-291 12-222 (291)
470 KOG0376 Serine-threonine phosp 31.4 1.1E+02 0.0023 30.5 5.4 48 411-460 17-65 (476)
471 KOG4567 GTPase-activating prot 31.3 4.5E+02 0.0098 24.7 9.8 78 317-399 263-350 (370)
472 COG0735 Fur Fe2+/Zn2+ uptake r 31.0 2.9E+02 0.0062 22.6 7.2 62 286-347 9-70 (145)
473 KOG2908 26S proteasome regulat 31.0 3.6E+02 0.0078 25.7 8.3 77 376-452 84-176 (380)
474 PF14669 Asp_Glu_race_2: Putat 30.3 3.6E+02 0.0078 23.3 12.7 155 228-392 1-206 (233)
475 PRK11639 zinc uptake transcrip 29.9 2.5E+02 0.0055 23.7 7.0 35 348-382 41-75 (169)
476 smart00777 Mad3_BUB1_I Mad3/BU 29.8 2.9E+02 0.0062 22.0 7.8 41 452-493 82-123 (125)
477 PF08424 NRDE-2: NRDE-2, neces 29.8 5E+02 0.011 24.8 14.5 134 395-532 16-184 (321)
478 COG5108 RPO41 Mitochondrial DN 29.2 3.6E+02 0.0077 28.4 8.6 23 240-262 33-55 (1117)
479 KOG1308 Hsp70-interacting prot 29.1 54 0.0012 30.9 2.9 117 409-530 125-243 (377)
480 KOG0128 RNA-binding protein SA 28.9 7.9E+02 0.017 26.8 26.1 54 379-432 474-531 (881)
481 PF14561 TPR_20: Tetratricopep 28.5 2.4E+02 0.0052 20.7 7.6 27 468-494 21-47 (90)
482 PF13934 ELYS: Nuclear pore co 28.1 4.4E+02 0.0095 23.6 12.4 69 439-512 114-183 (226)
483 PF13646 HEAT_2: HEAT repeats; 27.6 2E+02 0.0043 20.5 5.4 49 40-88 12-60 (88)
484 KOG4567 GTPase-activating prot 27.2 5.3E+02 0.012 24.3 10.1 73 418-496 263-345 (370)
485 PRK09462 fur ferric uptake reg 27.2 3.5E+02 0.0075 22.1 7.3 58 323-381 8-66 (148)
486 cd08323 CARD_APAF1 Caspase act 27.2 2.1E+02 0.0046 20.8 5.2 54 158-211 20-73 (86)
487 PF11817 Foie-gras_1: Foie gra 27.0 1.4E+02 0.0029 27.2 5.2 53 439-491 184-240 (247)
488 PF13646 HEAT_2: HEAT repeats; 26.6 2.4E+02 0.0052 20.0 7.0 61 163-224 11-71 (88)
489 KOG2168 Cullins [Cell cycle co 25.9 9E+02 0.02 26.5 19.3 17 480-496 718-734 (835)
490 COG5191 Uncharacterized conser 25.8 1.1E+02 0.0024 28.4 4.2 80 464-544 102-184 (435)
491 KOG3636 Uncharacterized conser 25.7 5.5E+02 0.012 25.4 8.8 69 426-496 176-252 (669)
492 PRK11639 zinc uptake transcrip 25.5 2.9E+02 0.0062 23.4 6.5 33 412-444 39-71 (169)
493 KOG0128 RNA-binding protein SA 25.4 9.1E+02 0.02 26.4 21.5 58 105-162 114-177 (881)
494 cd07153 Fur_like Ferric uptake 25.3 1.6E+02 0.0036 22.6 4.8 46 404-449 6-51 (116)
495 PF12926 MOZART2: Mitotic-spin 25.2 2.8E+02 0.006 20.3 6.5 26 353-378 29-54 (88)
496 PHA00425 DNA packaging protein 25.0 2.6E+02 0.0055 19.8 5.0 52 449-510 15-66 (88)
497 KOG2659 LisH motif-containing 24.6 5.1E+02 0.011 23.1 8.2 21 242-262 71-91 (228)
498 COG5108 RPO41 Mitochondrial DN 24.5 3.3E+02 0.0072 28.6 7.5 75 171-247 33-115 (1117)
499 PF11838 ERAP1_C: ERAP1-like C 24.5 6E+02 0.013 24.0 16.6 178 281-458 55-262 (324)
500 COG1413 FOG: HEAT repeat [Ener 24.5 6.2E+02 0.014 24.1 22.3 94 71-164 55-149 (335)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=2.2e-86 Score=711.99 Aligned_cols=589 Identities=31% Similarity=0.562 Sum_probs=565.9
Q ss_pred CCCCCCccchhHHHHHHHhcCChhhHHHHhccCCCCCcchHHHHHHHHHcCCChhHHHHHhhhcCC----C---------
Q 007519 5 NHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPE----R--------- 71 (600)
Q Consensus 5 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~--------- 71 (600)
.++.+++..++.++..|.+.|+++.|.++|+.|.+||..+|+.++.+|++.|++++|+++|++|.. |
T Consensus 115 ~~~~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll 194 (857)
T PLN03077 115 SHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVL 194 (857)
T ss_pred cCCCCCchHHHHHHHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHH
Confidence 456678888899999999999999999999999999999999999999999999999999998852 4
Q ss_pred --------------------------ChhhHHHHHHHHHhcCChHHHHHHhhcCCCCCceeHHHHHHHHHHCCChhHHHH
Q 007519 72 --------------------------NVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARK 125 (600)
Q Consensus 72 --------------------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 125 (600)
|+.+++.|+.+|++.|++++|.++|++|.+||..+||.++.+|++.|++++|++
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~ 274 (857)
T PLN03077 195 RTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLE 274 (857)
T ss_pred HHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHH
Confidence 445567888889999999999999999999999999999999999999999999
Q ss_pred HhhcCCC----CCcccHHHHHHHHHhcCCHhHHHHHHHhcc----cCCchhHHHHHHHHHhcCChhHHHHHHccCCCCCc
Q 007519 126 VFNSMPI----KNVISWNAMIAGYVECCMMGEAIVLFEEME----ERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNV 197 (600)
Q Consensus 126 ~~~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 197 (600)
+|++|.. ||..+|+.++.+|++.|+++.|.+++..+. .||..+|++|+.+|++.|++++|.++|++|..||.
T Consensus 275 lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~ 354 (857)
T PLN03077 275 LFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDA 354 (857)
T ss_pred HHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCe
Confidence 9999965 999999999999999999999999999987 48999999999999999999999999999999999
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHhcCChhhHHHHhcccC----CCCchhHHHHH
Q 007519 198 VSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVP----VRDEISWTSMI 273 (600)
Q Consensus 198 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~l~ 273 (600)
.+|+.+|.+|.+.|++++|+++|++|.+. |+.||..||+.++.+|++.|+++.|.++++.+. .++..+++.|+
T Consensus 355 ~s~n~li~~~~~~g~~~~A~~lf~~M~~~---g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li 431 (857)
T PLN03077 355 VSWTAMISGYEKNGLPDKALETYALMEQD---NVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALI 431 (857)
T ss_pred eeHHHHHHHHHhCCCHHHHHHHHHHHHHh---CCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHH
Confidence 99999999999999999999999999976 999999999999999999999999999999887 67888999999
Q ss_pred HHHHhcCChHHHHHHHhhCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhcccchhhhHH
Q 007519 274 DGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQ 353 (600)
Q Consensus 274 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~ 353 (600)
++|++.|++++|.++|++|.++|..+|+.+|.+|++.|+.++|+.+|++|.. +++||..||+.++.+|++.|+++.+.+
T Consensus 432 ~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~ 510 (857)
T PLN03077 432 EMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKE 510 (857)
T ss_pred HHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHH
Confidence 9999999999999999999999999999999999999999999999999986 599999999999999999999999999
Q ss_pred HHHHHhhhcCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh
Q 007519 354 IHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNS 433 (600)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 433 (600)
++..+.+.|+.++..++++|+++|+++|++++|.++|+.+ .+|..+||.+|.+|++.|+.++|+++|++|.+.|+.||.
T Consensus 511 i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~ 589 (857)
T PLN03077 511 IHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDE 589 (857)
T ss_pred HHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCc
Confidence 9999999999999999999999999999999999999999 999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHhh
Q 007519 434 VTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGF 513 (600)
Q Consensus 434 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~ 513 (600)
.||+.++.+|++.|++++|.++|+.|.+.+++.|+..+|++++.+|++.|++++|.+++++|+..|+..+|+.++.+|.
T Consensus 590 ~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~- 668 (857)
T PLN03077 590 VTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACR- 668 (857)
T ss_pred ccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHH-
Confidence 9999999999999999999999999997779999999999999999999999999999999999999999999999999
Q ss_pred hhCCHHHHHHHHHHHHhhCCCCCCcHHHHhHHHHhhCCcHHHHHHHHHHhhcCCccCCCcceEEECCeEEEEeeCCCCcc
Q 007519 514 CEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLSGDKIPA 593 (600)
Q Consensus 514 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 593 (600)
..|+.+.++...+++++++|+++..|..|+++|...|+|++|.++++.|+++|++|+||+|||++++.+|.|.+||.+||
T Consensus 669 ~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~ 748 (857)
T PLN03077 669 IHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHP 748 (857)
T ss_pred HcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhccc
Q 007519 594 QVAEIL 599 (600)
Q Consensus 594 ~~~~~~ 599 (600)
+..++|
T Consensus 749 ~~~~i~ 754 (857)
T PLN03077 749 QIKEIN 754 (857)
T ss_pred chHHHH
Confidence 998876
No 2
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.7e-72 Score=604.57 Aligned_cols=557 Identities=26% Similarity=0.383 Sum_probs=532.5
Q ss_pred CCCCCccchhHHHHHHHhcCChhhHHHHhccCCC----CCcchHHHHHHHHHcCCChhHHHHHhhhcCC----CChhhHH
Q 007519 6 HPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQ----RNVVSYNAMLSGFLQNGRLSEARRLFEEMPE----RNVVSWT 77 (600)
Q Consensus 6 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~ 77 (600)
..+|+..+++.++..|.+.|++++|..+|+.|.+ |+..+|..++..+...+.++.|..++..+.+ ++...++
T Consensus 46 ~~~~~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n 125 (857)
T PLN03077 46 SSSSSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGN 125 (857)
T ss_pred hcccchhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHH
Confidence 4566777899999999999999999999999975 7888999999999999999999999987764 7788999
Q ss_pred HHHHHHHhcCChHHHHHHhhcCCCCCceeHHHHHHHHHHCCChhHHHHHhhcCCC----CCcccHHHHHHHHHhcCCHhH
Q 007519 78 AMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPI----KNVISWNAMIAGYVECCMMGE 153 (600)
Q Consensus 78 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~ 153 (600)
.|+.+|++.|+++.|.++|+.|.+||..+|+.++.+|++.|++++|+++|++|.. ||..||+.++++|+..+++..
T Consensus 126 ~li~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~ 205 (857)
T PLN03077 126 AMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLAR 205 (857)
T ss_pred HHHHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhh
Confidence 9999999999999999999999999999999999999999999999999999964 999999999999999999999
Q ss_pred HHHHHHhcc----cCCchhHHHHHHHHHhcCChhHHHHHHccCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhhhcC
Q 007519 154 AIVLFEEME----ERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDN 229 (600)
Q Consensus 154 A~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~ 229 (600)
+.+++..+. .||..++++|+.+|++.|+++.|.++|++|.++|..+|+.+|.+|.+.|++++|+++|++|.+.
T Consensus 206 ~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~--- 282 (857)
T PLN03077 206 GREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMREL--- 282 (857)
T ss_pred HHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHc---
Confidence 999999887 4899999999999999999999999999999999999999999999999999999999999977
Q ss_pred CCCCChhhHHHHHHHHHhcCChhhHHHHhcccC----CCCchhHHHHHHHHHhcCChHHHHHHHhhCCCCChhhHHHHHH
Q 007519 230 GNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVP----VRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMIS 305 (600)
Q Consensus 230 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~ 305 (600)
|+.||..||+.++.+|++.|+.+.+.+++..+. .+|..+|+.++.+|++.|++++|.++|++|..+|..+||.+|.
T Consensus 283 g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~ 362 (857)
T PLN03077 283 SVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMIS 362 (857)
T ss_pred CCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHH
Confidence 999999999999999999999999999999886 6899999999999999999999999999999999999999999
Q ss_pred HHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhcccchhhhHHHHHHHhhhcCCCchhHHHHHHHHHHhcCChHH
Q 007519 306 GLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDN 385 (600)
Q Consensus 306 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 385 (600)
+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.+.++++.+.+.|+.|+..+++.|+++|++.|++++
T Consensus 363 ~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~ 442 (857)
T PLN03077 363 GYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDK 442 (857)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccCchHHHHHHHHHHHhhcCC
Q 007519 386 AYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKI 465 (600)
Q Consensus 386 A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 465 (600)
|.++|++|..+|..+|+.++.+|++.|+.++|+.+|++|.. +++||..||..++.+|++.|+++.+.+++..+.+. |+
T Consensus 443 A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~-g~ 520 (857)
T PLN03077 443 ALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRT-GI 520 (857)
T ss_pred HHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHh-CC
Confidence 99999999999999999999999999999999999999986 59999999999999999999999999999999986 99
Q ss_pred CCCcchHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHhhhhCCHHHHHHHHHHHHh--hCCCCCCcHHHHh
Q 007519 466 QPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLE--LDPLNAPAHVVLC 543 (600)
Q Consensus 466 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~--~~p~~~~~~~~l~ 543 (600)
.++..++++|+.+|++.|++++|.++|+.+ .||..+|+.++.+|. +.|+.++|+++|+++.+ ..| |..+|..++
T Consensus 521 ~~~~~~~naLi~~y~k~G~~~~A~~~f~~~--~~d~~s~n~lI~~~~-~~G~~~~A~~lf~~M~~~g~~P-d~~T~~~ll 596 (857)
T PLN03077 521 GFDGFLPNALLDLYVRCGRMNYAWNQFNSH--EKDVVSWNILLTGYV-AHGKGSMAVELFNRMVESGVNP-DEVTFISLL 596 (857)
T ss_pred CccceechHHHHHHHHcCCHHHHHHHHHhc--CCChhhHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCC-CcccHHHHH
Confidence 999999999999999999999999999998 789999999999999 99999999999999988 567 889999999
Q ss_pred HHHHhhCCcHHHHHHHHHHh-hcCCccCC
Q 007519 544 NIYAASGRHVEEHKLRMDMG-LKGVRKVP 571 (600)
Q Consensus 544 ~~~~~~g~~~~A~~~~~~~~-~~~~~~~~ 571 (600)
.+|.+.|++++|.++++.|. +.|+.|+.
T Consensus 597 ~a~~~~g~v~ea~~~f~~M~~~~gi~P~~ 625 (857)
T PLN03077 597 CACSRSGMVTQGLEYFHSMEEKYSITPNL 625 (857)
T ss_pred HHHhhcChHHHHHHHHHHHHHHhCCCCch
Confidence 99999999999999999998 67887754
No 3
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.9e-72 Score=589.93 Aligned_cols=494 Identities=31% Similarity=0.557 Sum_probs=479.1
Q ss_pred CCceeHHHHHHHHHHCCChhHHHHHhhcCCC-----CCcccHHHHHHHHHhcCCHhHHHHHHHhcc----cCCchhHHHH
Q 007519 102 RNVVSWNSMVVGLIRNGELNEARKVFNSMPI-----KNVISWNAMIAGYVECCMMGEAIVLFEEME----ERNVVTWTSM 172 (600)
Q Consensus 102 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~l 172 (600)
++..+|+.++..+.+.|++++|+++|+.|.. ||..+|+.++.+|.+.++++.+.+++..|. .||..+|+.+
T Consensus 85 ~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~L 164 (697)
T PLN03081 85 KSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRV 164 (697)
T ss_pred CCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHH
Confidence 5677899999999999999999999998863 688999999999999999999999999887 4899999999
Q ss_pred HHHHHhcCChhHHHHHHccCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHhcCChh
Q 007519 173 ISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLE 252 (600)
Q Consensus 173 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 252 (600)
+.+|++.|+++.|.++|++|.+||..+|+.++.+|++.|++++|+++|++|.+. |+.|+..||+.++.+|++.|..+
T Consensus 165 i~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~---g~~p~~~t~~~ll~a~~~~~~~~ 241 (697)
T PLN03081 165 LLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWED---GSDAEPRTFVVMLRASAGLGSAR 241 (697)
T ss_pred HHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHh---CCCCChhhHHHHHHHHhcCCcHH
Confidence 999999999999999999999999999999999999999999999999999976 99999999999999999999999
Q ss_pred hHHHHhcccC----CCCchhHHHHHHHHHhcCChHHHHHHHhhCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCC
Q 007519 253 EAQNLFDTVP----VRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGV 328 (600)
Q Consensus 253 ~a~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 328 (600)
.+.+++..+. .++..+++.|+++|++.|++++|.++|++|..+|+.+||.+|.+|++.|++++|+++|++|.+.|+
T Consensus 242 ~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~ 321 (697)
T PLN03081 242 AGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGV 321 (697)
T ss_pred HHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 9999987765 678999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhHHHHHHHHHhcccchhhhHHHHHHHhhhcCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHH
Q 007519 329 PPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGF 408 (600)
Q Consensus 329 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~ 408 (600)
.||..||+.++.+|++.|+++.|.+++..+.+.|+.|+..+|++|+++|++.|++++|.++|++|..+|..+||.+|.+|
T Consensus 322 ~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y 401 (697)
T PLN03081 322 SIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGY 401 (697)
T ss_pred CCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCCCcchHHHHHHHHhhcCChHHH
Q 007519 409 SHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEA 488 (600)
Q Consensus 409 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 488 (600)
++.|+.++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|.+.+++.|+..+|++++.+|++.|++++|
T Consensus 402 ~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA 481 (697)
T PLN03081 402 GNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEA 481 (697)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHH
Confidence 99999999999999999999999999999999999999999999999999998789999999999999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCCCcHHHHhHHHHhhCCcHHHHHHHHHHhhcCCc
Q 007519 489 EEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVR 568 (600)
Q Consensus 489 ~~~~~~~~~~p~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 568 (600)
.+++++++..|+..+|+.++.+|. ..|+.+.|..++++++++.|++..+|..|+.+|.+.|++++|.++++.|+++|++
T Consensus 482 ~~~~~~~~~~p~~~~~~~Ll~a~~-~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~ 560 (697)
T PLN03081 482 YAMIRRAPFKPTVNMWAALLTACR-IHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLS 560 (697)
T ss_pred HHHHHHCCCCCCHHHHHHHHHHHH-HcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCc
Confidence 999999999999999999999999 9999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcceEEECCeEEEEeeCCCCccchhccc
Q 007519 569 KVPGCSWLMRNGGIQMFLSGDKIPAQVAEIL 599 (600)
Q Consensus 569 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 599 (600)
+.||+||+++.+.+|.|.+|+.+||+..++|
T Consensus 561 k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~ 591 (697)
T PLN03081 561 MHPACTWIEVKKQDHSFFSGDRLHPQSREIY 591 (697)
T ss_pred cCCCeeEEEECCeEEEEccCCCCCccHHHHH
Confidence 9999999999999999999999999988775
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=3.1e-62 Score=514.17 Aligned_cols=495 Identities=17% Similarity=0.215 Sum_probs=438.9
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHhhcCCCCC-----ceeHHHHHHHHHHCCChhHHHHHhhcCCCCCcccHHHHHHHH
Q 007519 71 RNVVSWTAMICGLADAGRVCEARKLFEEMPERN-----VVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGY 145 (600)
Q Consensus 71 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~ 145 (600)
++...|..++..+++.|++++|.++|+.|.+++ ...++.++.+|.+.|.+++|..+|+.|..|+..+|+.++.+|
T Consensus 368 ~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a~ 447 (1060)
T PLN03218 368 RKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVC 447 (1060)
T ss_pred CCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 567788888888899999999999999998744 345567778889999999999999999999999999999999
Q ss_pred HhcCCHhHHHHHHHhcc----cCCchhHHHHHHHHHhcCChhHHHHHHccCC----CCCcchHHHHHHHHHhcCChhHHH
Q 007519 146 VECCMMGEAIVLFEEME----ERNVVTWTSMISGYCRAGEVEEGYCLFRRMP----RKNVVSWTAMIGGFAWNGFHKESL 217 (600)
Q Consensus 146 ~~~~~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~ 217 (600)
++.|+++.|.++|+.|. .||..+|+.+|.+|++.|+++.|.++|++|. .||..+|+.+|.+|++.|++++|.
T Consensus 448 ~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl 527 (1060)
T PLN03218 448 ASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAF 527 (1060)
T ss_pred HhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHH
Confidence 99999999999999987 4889999999999999999999999999997 478899999999999999999999
Q ss_pred HHHHHHHhhhcCCCCCChhhHHHHHHHHHhcCChhhHHHHhcccC------CCCchhHHHHHHHHHhcCChHHHHHHHhh
Q 007519 218 LLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVP------VRDEISWTSMIDGYLSVGQVSNAYYLFHN 291 (600)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 291 (600)
++|++|.+. |+.||..+|+.++.+|++.|++++|.++|++|. .||..+|+.++.+|++.|++++|.++|+.
T Consensus 528 ~lf~~M~~~---Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~ 604 (1060)
T PLN03218 528 GAYGIMRSK---NVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQM 604 (1060)
T ss_pred HHHHHHHHc---CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 999999876 899999999999999999999999999999884 57888999999999999999999999999
Q ss_pred CCC----CChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhcccchhhhHHHHHHHhhhcCCCch
Q 007519 292 MPD----RDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDL 367 (600)
Q Consensus 292 ~~~----~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 367 (600)
|.+ |+..+|+.+|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.++++.|.+.|+.|+.
T Consensus 605 M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~ 684 (1060)
T PLN03218 605 IHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGT 684 (1060)
T ss_pred HHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCH
Confidence 876 6778999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhcCC----CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHh
Q 007519 368 ILENCLISMYAKCGVIDNAYNIFSNMV----SRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSAC 443 (600)
Q Consensus 368 ~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 443 (600)
.+|+.++.+|++.|++++|.++|++|. .||..+|+.+|.+|++.|++++|.++|++|...|+.||..||+.++.+|
T Consensus 685 ~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~ 764 (1060)
T PLN03218 685 VSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVAS 764 (1060)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 999999999999999999999999985 7899999999999999999999999999999999999999999999999
Q ss_pred cccCchHHHHHHHHHHHhhcCCCCCcchHHHHHHHHhh----c-------------------CChHHHHHHHHhCC---C
Q 007519 444 SHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGR----A-------------------GKIKEAEEFVLRLP---F 497 (600)
Q Consensus 444 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~-------------------g~~~~A~~~~~~~~---~ 497 (600)
++.|++++|.+++++|.+. |+.||..+|++++.+|.+ + +..++|..+|++|. .
T Consensus 765 ~k~G~le~A~~l~~~M~k~-Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi 843 (1060)
T PLN03218 765 ERKDDADVGLDLLSQAKED-GIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGT 843 (1060)
T ss_pred HHCCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCC
Confidence 9999999999999999886 999999999999876432 1 12367999999985 8
Q ss_pred CCCHHHHHHHHHHHhhhhCCHHHHHHHHHHHHh-hCCCCCCcHHHHhHHHHhhCCcHHHHHHHHHHhhcCCccCCC
Q 007519 498 EPDHRIWGALLGACGFCEGNAEIAEHAAKRLLE-LDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPG 572 (600)
Q Consensus 498 ~p~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~-~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 572 (600)
.||..+|+.++.++. ..++...+..+++.+.. ..+.+..+|..|+..+.+. .++|..++++|...|+.|.-.
T Consensus 844 ~Pd~~T~~~vL~cl~-~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 844 LPTMEVLSQVLGCLQ-LPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred CCCHHHHHHHHHHhc-ccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCcc
Confidence 899999999997666 88888888888876543 2344778999999987332 368999999999999987753
No 5
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=3.2e-61 Score=506.51 Aligned_cols=487 Identities=16% Similarity=0.242 Sum_probs=448.6
Q ss_pred CCcchHHHHHHHHHcCCChhHHHHHhhhcCCC-----ChhhHHHHHHHHHhcCChHHHHHHhhcCCCCCceeHHHHHHHH
Q 007519 40 RNVVSYNAMLSGFLQNGRLSEARRLFEEMPER-----NVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGL 114 (600)
Q Consensus 40 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~ 114 (600)
++...|..++..+++.|++++|+++|++|.++ +..+++.++.+|.+.|.+++|..+|+.|..||..+|+.++.+|
T Consensus 368 ~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a~ 447 (1060)
T PLN03218 368 RKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVC 447 (1060)
T ss_pred CCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 67778999999999999999999999999863 4556788889999999999999999999999999999999999
Q ss_pred HHCCChhHHHHHhhcCCC----CCcccHHHHHHHHHhcCCHhHHHHHHHhcc----cCCchhHHHHHHHHHhcCChhHHH
Q 007519 115 IRNGELNEARKVFNSMPI----KNVISWNAMIAGYVECCMMGEAIVLFEEME----ERNVVTWTSMISGYCRAGEVEEGY 186 (600)
Q Consensus 115 ~~~~~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~ 186 (600)
++.|+++.|.++|++|.+ ||..+|+.++.+|++.|+++.|.++|++|. .||..+|+.+|.+|++.|++++|.
T Consensus 448 ~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl 527 (1060)
T PLN03218 448 ASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAF 527 (1060)
T ss_pred HhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHH
Confidence 999999999999999975 899999999999999999999999999998 489999999999999999999999
Q ss_pred HHHccCC----CCCcchHHHHHHHHHhcCChhHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHhcCChhhHHHHhcccC
Q 007519 187 CLFRRMP----RKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVP 262 (600)
Q Consensus 187 ~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 262 (600)
++|+.|. .||..+|+.+|.+|++.|++++|.++|++|... ..|+.||..+|+.++.+|++.|++++|.++|+.|.
T Consensus 528 ~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~-~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~ 606 (1060)
T PLN03218 528 GAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAE-THPIDPDHITVGALMKACANAGQVDRAKEVYQMIH 606 (1060)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-cCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 9999996 389999999999999999999999999999863 34789999999999999999999999999999997
Q ss_pred ----CCCchhHHHHHHHHHhcCChHHHHHHHhhCCC----CChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhH
Q 007519 263 ----VRDEISWTSMIDGYLSVGQVSNAYYLFHNMPD----RDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNAT 334 (600)
Q Consensus 263 ----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~ 334 (600)
.++..+|+.++.+|++.|++++|..+|++|.. ||..+|+.++.+|++.|++++|.+++++|.+.|+.||..+
T Consensus 607 e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~t 686 (1060)
T PLN03218 607 EYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVS 686 (1060)
T ss_pred HcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHH
Confidence 56778999999999999999999999999975 7999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcccchhhhHHHHHHHhhhcCCCchhHHHHHHHHHHhcCChHHHHHHHhcCC----CCChhhHHHHHHHHHh
Q 007519 335 FSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMV----SRDLVSWNSMVMGFSH 410 (600)
Q Consensus 335 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~ 410 (600)
|+.++.+|++.|+++.|.++|+.|.+.|+.|+..+|+.++.+|++.|++++|.++|++|. .||..+|+.++.+|++
T Consensus 687 ynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k 766 (1060)
T PLN03218 687 YSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASER 766 (1060)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999986 7999999999999999
Q ss_pred cCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcc----c-------------------CchHHHHHHHHHHHhhcCCCC
Q 007519 411 HGLANETLKVFESMLESGTHPNSVTFLGILSACSH----A-------------------GLVSRGWELFNAMFDVYKIQP 467 (600)
Q Consensus 411 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~-------------------g~~~~a~~~~~~~~~~~~~~p 467 (600)
.|++++|.+++.+|.+.|+.||..+|+.++..|.+ . +..+.|..+|++|.+. |+.|
T Consensus 767 ~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~-Gi~P 845 (1060)
T PLN03218 767 KDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISA-GTLP 845 (1060)
T ss_pred CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHC-CCCC
Confidence 99999999999999999999999999999876432 1 1246799999999997 9999
Q ss_pred CcchHHHHHHHHhhcCChHHHHHHHHhCC---CCCCHHHHHHHHHHHhhhhCCHHHHHHHHHHHHhh
Q 007519 468 GPEHYVSMINLLGRAGKIKEAEEFVLRLP---FEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLEL 531 (600)
Q Consensus 468 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~p~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~ 531 (600)
|..+|+.++.++.+.+..+.+..+++.+. ..|+..+|+.++.++. .. .++|..+++.+.+.
T Consensus 846 d~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~-~~--~~~A~~l~~em~~~ 909 (1060)
T PLN03218 846 TMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFG-EY--DPRAFSLLEEAASL 909 (1060)
T ss_pred CHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhc-cC--hHHHHHHHHHHHHc
Confidence 99999999999999999999999999885 5677899999999875 32 46899999999984
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.2e-60 Score=500.99 Aligned_cols=453 Identities=22% Similarity=0.376 Sum_probs=431.4
Q ss_pred CCccchhHHHHHHHhcCChhhHHHHhccCCC-----CCcchHHHHHHHHHcCCChhHHHHHhhhcCC----CChhhHHHH
Q 007519 9 SLVVHLTSSITKYSKRGFIDEAKALFQLMPQ-----RNVVSYNAMLSGFLQNGRLSEARRLFEEMPE----RNVVSWTAM 79 (600)
Q Consensus 9 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~l 79 (600)
.+..+|+.++..|.+.|++++|+++|+.|.. ||..+|+.++.++.+.++++.|.+++..|.+ ||..+|+.|
T Consensus 85 ~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~L 164 (697)
T PLN03081 85 KSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRV 164 (697)
T ss_pred CCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHH
Confidence 3455899999999999999999999999863 7889999999999999999999999999974 899999999
Q ss_pred HHHHHhcCChHHHHHHhhcCCCCCceeHHHHHHHHHHCCChhHHHHHhhcCCC----CCcccHHHHHHHHHhcCCHhHHH
Q 007519 80 ICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPI----KNVISWNAMIAGYVECCMMGEAI 155 (600)
Q Consensus 80 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~A~ 155 (600)
+.+|++.|++++|.++|++|.+||..+|+.++.+|++.|++++|+++|++|.. |+..+|..++.+|+..|+.+.+.
T Consensus 165 i~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~ 244 (697)
T PLN03081 165 LLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQ 244 (697)
T ss_pred HHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHH
Confidence 99999999999999999999999999999999999999999999999999965 89999999999999999999999
Q ss_pred HHHHhcc----cCCchhHHHHHHHHHhcCChhHHHHHHccCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhhhcCCC
Q 007519 156 VLFEEME----ERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGN 231 (600)
Q Consensus 156 ~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~ 231 (600)
+++..+. .+|..+|++|+++|++.|++++|.++|+.|.++|..+|+.+|.+|.+.|++++|+++|++|.+. |+
T Consensus 245 ~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~---g~ 321 (697)
T PLN03081 245 QLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDS---GV 321 (697)
T ss_pred HHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHc---CC
Confidence 9988876 4899999999999999999999999999999999999999999999999999999999999976 99
Q ss_pred CCChhhHHHHHHHHHhcCChhhHHHHhcccC----CCCchhHHHHHHHHHhcCChHHHHHHHhhCCCCChhhHHHHHHHH
Q 007519 232 NCNVQSCNSMINGYIRFGRLEEAQNLFDTVP----VRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGL 307 (600)
Q Consensus 232 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~ 307 (600)
.||..||+.++.+|++.|++++|.+++..+. +++..++++|+++|++.|++++|.++|++|.++|+.+||.+|.+|
T Consensus 322 ~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y 401 (697)
T PLN03081 322 SIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGY 401 (697)
T ss_pred CCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHH
Confidence 9999999999999999999999999999886 778999999999999999999999999999999999999999999
Q ss_pred HhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhcccchhhhHHHHHHHhh-hcCCCchhHHHHHHHHHHhcCChHHH
Q 007519 308 VQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMK-TESESDLILENCLISMYAKCGVIDNA 386 (600)
Q Consensus 308 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A 386 (600)
++.|+.++|+++|++|.+.|+.||..||+.++.+|++.|.++++.++|+.|.+ .|+.|+..+|++++++|++.|++++|
T Consensus 402 ~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA 481 (697)
T PLN03081 402 GNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEA 481 (697)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHH
Confidence 99999999999999999999999999999999999999999999999999976 69999999999999999999999999
Q ss_pred HHHHhcCC-CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHhcccCchHHHHHHHHHHHhhcC
Q 007519 387 YNIFSNMV-SRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPN-SVTFLGILSACSHAGLVSRGWELFNAMFDVYK 464 (600)
Q Consensus 387 ~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 464 (600)
.++++++. .|+..+|+.++.+|...|+.+.|..+++++.+ +.|+ ..+|..++..|++.|++++|.++++.|.+. |
T Consensus 482 ~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~--~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~-g 558 (697)
T PLN03081 482 YAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG--MGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK-G 558 (697)
T ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC--CCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc-C
Confidence 99999997 89999999999999999999999999999975 4564 579999999999999999999999999987 7
Q ss_pred CCC
Q 007519 465 IQP 467 (600)
Q Consensus 465 ~~p 467 (600)
+..
T Consensus 559 ~~k 561 (697)
T PLN03081 559 LSM 561 (697)
T ss_pred Ccc
Confidence 654
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=7.3e-36 Score=329.62 Aligned_cols=540 Identities=14% Similarity=0.121 Sum_probs=305.7
Q ss_pred cchhHHHHHHHhcCChhhHHHHhccCCC---CCcchHHHHHHHHHcCCChhHHHHHhhhcCC---CChhhHHHHHHHHHh
Q 007519 12 VHLTSSITKYSKRGFIDEAKALFQLMPQ---RNVVSYNAMLSGFLQNGRLSEARRLFEEMPE---RNVVSWTAMICGLAD 85 (600)
Q Consensus 12 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~ 85 (600)
..+..++..+.+.|++++|...++.+.+ .+...+..+...+.+.|++++|.++|+++.+ .+...+..+...+..
T Consensus 330 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 409 (899)
T TIGR02917 330 QARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLS 409 (899)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Confidence 3344444555555555555555554432 2233444455555555555555555555443 123344445555555
Q ss_pred cCChHHHHHHhhcCCC--C-CceeHHHHHHHHHHCCChhHHHHHhhcCCC---CCcccHHHHHHHHHhcCCHhHHHHHHH
Q 007519 86 AGRVCEARKLFEEMPE--R-NVVSWNSMVVGLIRNGELNEARKVFNSMPI---KNVISWNAMIAGYVECCMMGEAIVLFE 159 (600)
Q Consensus 86 ~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~ 159 (600)
.|++++|++.|+.+.+ | +......++..+.+.|++++|.++++++.. .++.++..+...+...|++++|.+.|+
T Consensus 410 ~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 489 (899)
T TIGR02917 410 QGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFE 489 (899)
T ss_pred CCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 5555555555554443 1 222334445555555555555555555543 234455555566666666666666666
Q ss_pred hccc---CCchhHHHHHHHHHhcCChhHHHHHHccCCC---CCcchHHHHHHHHHhcCChhHHHHHHHHHHhhhcCCCCC
Q 007519 160 EMEE---RNVVTWTSMISGYCRAGEVEEGYCLFRRMPR---KNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNC 233 (600)
Q Consensus 160 ~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 233 (600)
++.+ .+...+..++..+...|++++|.+.|+++.+ .+..++..+...+.+.|+.++|...++++... .+.
T Consensus 490 ~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~ 565 (899)
T TIGR02917 490 KALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAEL----NPQ 565 (899)
T ss_pred HHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----Ccc
Confidence 5542 2233444555556666666666666655543 23345555566666666666666666666543 123
Q ss_pred ChhhHHHHHHHHHhcCChhhHHHHhcccC---CCCchhHHHHHHHHHhcCChHHHHHHHhhCCC---CChhhHHHHHHHH
Q 007519 234 NVQSCNSMINGYIRFGRLEEAQNLFDTVP---VRDEISWTSMIDGYLSVGQVSNAYYLFHNMPD---RDAVAWTAMISGL 307 (600)
Q Consensus 234 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~ 307 (600)
+...+..++..+...|++++|..+++.+. +.++..|..++.++...|++++|+..|+.+.+ .+...+..+...+
T Consensus 566 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 645 (899)
T TIGR02917 566 EIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAY 645 (899)
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 34455556666666666666666666554 33455566666666666666666666665533 2344555666666
Q ss_pred HhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhcccchhhhHHHHHHHhhhcCCCchhHHHHHHHHHHhcCChHHHH
Q 007519 308 VQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAY 387 (600)
Q Consensus 308 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 387 (600)
.+.|++++|...|+++.+.. +.+..++..+...+...|+++.|..+++.+.+... .+...+..+...+...|++++|.
T Consensus 646 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~ 723 (899)
T TIGR02917 646 AVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHP-KAALGFELEGDLYLRQKDYPAAI 723 (899)
T ss_pred HHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-CChHHHHHHHHHHHHCCCHHHHH
Confidence 66666666666666665542 33345555566666666666666666666555442 24445555666666666666666
Q ss_pred HHHhcCC--CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccCchHHHHHHHHHHHhhcCC
Q 007519 388 NIFSNMV--SRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKI 465 (600)
Q Consensus 388 ~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 465 (600)
..|+.+. .|+..++..++.++...|++++|.+.++++.+.. +.+...+..+...|...|++++|.+.|+++.+. .
T Consensus 724 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~ 800 (899)
T TIGR02917 724 QAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKK--A 800 (899)
T ss_pred HHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHh--C
Confidence 6666654 3444555556666666666666666666666542 444555556666666666666666666666643 1
Q ss_pred CCCcchHHHHHHHHhhcCChHHHHHHHHhCC-CCCC-HHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCCCcHHHHh
Q 007519 466 QPGPEHYVSMINLLGRAGKIKEAEEFVLRLP-FEPD-HRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLC 543 (600)
Q Consensus 466 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 543 (600)
++++.+++.++..+...|+ ++|+++++++. ..|+ ...+..+...+. ..|++++|+..++++++..|.++.++..++
T Consensus 801 p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~ 878 (899)
T TIGR02917 801 PDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLV-EKGEADRALPLLRKAVNIAPEAAAIRYHLA 878 (899)
T ss_pred CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHH-HcCCHHHHHHHHHHHHhhCCCChHHHHHHH
Confidence 2245566666666666666 66666666643 3332 334444555555 667777777777777777666667777777
Q ss_pred HHHHhhCCcHHHHHHHHHH
Q 007519 544 NIYAASGRHVEEHKLRMDM 562 (600)
Q Consensus 544 ~~~~~~g~~~~A~~~~~~~ 562 (600)
.++.+.|++++|.++++.|
T Consensus 879 ~~~~~~g~~~~A~~~~~~~ 897 (899)
T TIGR02917 879 LALLATGRKAEARKELDKL 897 (899)
T ss_pred HHHHHcCCHHHHHHHHHHH
Confidence 7777777777777766554
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=9.6e-35 Score=320.73 Aligned_cols=540 Identities=13% Similarity=0.086 Sum_probs=395.3
Q ss_pred HHHHHHHhcCChhhHHHHhccCCC---CCcchHHHHHHHHHcCCChhHHHHHhhhcCC---CChhhHHHHHHHHHhcCCh
Q 007519 16 SSITKYSKRGFIDEAKALFQLMPQ---RNVVSYNAMLSGFLQNGRLSEARRLFEEMPE---RNVVSWTAMICGLADAGRV 89 (600)
Q Consensus 16 ~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~ 89 (600)
.+...+...|++++|...++...+ .+...+..+...+...|++++|...++.+.+ .+...+..++..+.+.|++
T Consensus 300 ~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 379 (899)
T TIGR02917 300 LAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDF 379 (899)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCH
Confidence 334444555555555555555432 2233445555556666666666666665543 2344556666666666666
Q ss_pred HHHHHHhhcCCC---CCceeHHHHHHHHHHCCChhHHHHHhhcCCC---CCcccHHHHHHHHHhcCCHhHHHHHHHhccc
Q 007519 90 CEARKLFEEMPE---RNVVSWNSMVVGLIRNGELNEARKVFNSMPI---KNVISWNAMIAGYVECCMMGEAIVLFEEMEE 163 (600)
Q Consensus 90 ~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 163 (600)
++|.+.|+++.+ .+...+..+...+...|++++|++.++++.. ........++..+.+.|++++|..+++.+.+
T Consensus 380 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 459 (899)
T TIGR02917 380 EKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEK 459 (899)
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 666666666544 2334455566666666666666666666554 1223444556666777777777777776653
Q ss_pred ---CCchhHHHHHHHHHhcCChhHHHHHHccCCC---CCcchHHHHHHHHHhcCChhHHHHHHHHHHhhhcCCCCCChhh
Q 007519 164 ---RNVVTWTSMISGYCRAGEVEEGYCLFRRMPR---KNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQS 237 (600)
Q Consensus 164 ---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 237 (600)
++..++..+...+...|++++|.+.|+++.+ .+...+..+...+...|++++|.+.++.+... .+.+..+
T Consensus 460 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~ 535 (899)
T TIGR02917 460 KQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTI----DPKNLRA 535 (899)
T ss_pred hCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----CcCcHHH
Confidence 3456677777778888888888888877653 24456667777777888888888888888764 2345667
Q ss_pred HHHHHHHHHhcCChhhHHHHhcccC---CCCchhHHHHHHHHHhcCChHHHHHHHhhCCC---CChhhHHHHHHHHHhCC
Q 007519 238 CNSMINGYIRFGRLEEAQNLFDTVP---VRDEISWTSMIDGYLSVGQVSNAYYLFHNMPD---RDAVAWTAMISGLVQNE 311 (600)
Q Consensus 238 ~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g 311 (600)
+..+...+.+.|+.++|..+++++. +.+...+..++..+...|++++|..+++.+.+ .+...|..+...+...|
T Consensus 536 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 615 (899)
T TIGR02917 536 ILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAG 615 (899)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC
Confidence 7777788888888888888887775 44556677788888888888888888887754 45667888888888888
Q ss_pred ChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhcccchhhhHHHHHHHhhhcCCCchhHHHHHHHHHHhcCChHHHHHHHh
Q 007519 312 LFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFS 391 (600)
Q Consensus 312 ~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 391 (600)
++++|+..|+.+.+.. +.+...+..+..++...|+++.|..+++.+.+... .+...+..++..+...|++++|..+++
T Consensus 616 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~ 693 (899)
T TIGR02917 616 DLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELKP-DNTEAQIGLAQLLLAAKRTESAKKIAK 693 (899)
T ss_pred CHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 8888888888887753 34455677777788888888888888888776543 356677888888888889998888888
Q ss_pred cCC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCCC
Q 007519 392 NMV---SRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPG 468 (600)
Q Consensus 392 ~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~ 468 (600)
.+. +.+...+..+...+...|++++|...|+++... .|+..++..+..++...|++++|.+.++++.+. .+.+
T Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~--~~~~ 769 (899)
T TIGR02917 694 SLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLASGNTAEAVKTLEAWLKT--HPND 769 (899)
T ss_pred HHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCC
Confidence 876 446677888888888999999999999998875 455577777888889999999999999988864 2236
Q ss_pred cchHHHHHHHHhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCCCcHHHHhHHH
Q 007519 469 PEHYVSMINLLGRAGKIKEAEEFVLRLP--FEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIY 546 (600)
Q Consensus 469 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 546 (600)
...+..++..|...|++++|.+.|+++. .+++...++.+...+. ..|+ ++|+..++++++..|+++..+..++.++
T Consensus 770 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~-~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 847 (899)
T TIGR02917 770 AVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYL-ELKD-PRALEYAEKALKLAPNIPAILDTLGWLL 847 (899)
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-hcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHH
Confidence 7788899999999999999999998875 3446677888888888 8888 8899999999999999999999999999
Q ss_pred HhhCCcHHHHHHHHHHhhcCC
Q 007519 547 AASGRHVEEHKLRMDMGLKGV 567 (600)
Q Consensus 547 ~~~g~~~~A~~~~~~~~~~~~ 567 (600)
...|++++|.++++.+.+.+.
T Consensus 848 ~~~g~~~~A~~~~~~a~~~~~ 868 (899)
T TIGR02917 848 VEKGEADRALPLLRKAVNIAP 868 (899)
T ss_pred HHcCCHHHHHHHHHHHHhhCC
Confidence 999999999998888777654
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.97 E-value=5.4e-27 Score=258.77 Aligned_cols=546 Identities=12% Similarity=0.079 Sum_probs=384.8
Q ss_pred CCCCccchhHHHHHHHhcCChhhHHHHhccCCC--CCcchH-----------------HHHHHHHHcCCChhHHHHHhhh
Q 007519 7 PKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQ--RNVVSY-----------------NAMLSGFLQNGRLSEARRLFEE 67 (600)
Q Consensus 7 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~-----------------~~l~~~~~~~~~~~~A~~~~~~ 67 (600)
-|.++..+...+..+.+.|+.++|.+.++++.+ |+...+ ..+.+.+...|++++|.+.|++
T Consensus 58 ~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~ 137 (1157)
T PRK11447 58 DPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALASYDK 137 (1157)
T ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHH
Confidence 355677777788888888888888888888765 433222 2334467778888888888888
Q ss_pred cCCCChhhHH----HHHHHHHhcCChHHHHHHhhcCCC--C-CceeHHHHHHHHHHCCChhHHHHHhhcCCC-CC-----
Q 007519 68 MPERNVVSWT----AMICGLADAGRVCEARKLFEEMPE--R-NVVSWNSMVVGLIRNGELNEARKVFNSMPI-KN----- 134 (600)
Q Consensus 68 ~~~~~~~~~~----~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~----- 134 (600)
+.+.++.... .+.......|+.++|++.|+++.+ | +...+..+...+...|++++|+..++++.. +.
T Consensus 138 ~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~a 217 (1157)
T PRK11447 138 LFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAA 217 (1157)
T ss_pred HccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHH
Confidence 8752221111 111122235788888888888776 3 445677788888888888888888877632 10
Q ss_pred ------------------------------cccH---------------------HHHHHHHHhcCCHhHHHHHHHhccc
Q 007519 135 ------------------------------VISW---------------------NAMIAGYVECCMMGEAIVLFEEMEE 163 (600)
Q Consensus 135 ------------------------------~~~~---------------------~~l~~~~~~~~~~~~A~~~~~~~~~ 163 (600)
.... ......+...|++++|+..|++..+
T Consensus 218 a~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~ 297 (1157)
T PRK11447 218 AQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVR 297 (1157)
T ss_pred HHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 0000 0112344566778888888877763
Q ss_pred --C-CchhHHHHHHHHHhcCChhHHHHHHccCCC--CCc---chHH------------HHHHHHHhcCChhHHHHHHHHH
Q 007519 164 --R-NVVTWTSMISGYCRAGEVEEGYCLFRRMPR--KNV---VSWT------------AMIGGFAWNGFHKESLLLFIEM 223 (600)
Q Consensus 164 --~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~---~~~~------------~li~~~~~~~~~~~a~~~~~~~ 223 (600)
| +..++..+..++.+.|++++|+..|++..+ |+. ..|. .....+.+.|++++|+..|+++
T Consensus 298 ~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~A 377 (1157)
T PRK11447 298 ANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQA 377 (1157)
T ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 3 456677777788888888888888877654 221 1111 1234566778888888888888
Q ss_pred HhhhcCCCCCChhhHHHHHHHHHhcCChhhHHHHhcccC---CCCchhHHHHHHHHHhcCChHHHHHHHhhCCCCC----
Q 007519 224 KGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVP---VRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRD---- 296 (600)
Q Consensus 224 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---- 296 (600)
.+. .+.+...+..+...+...|++++|++.|+++. +.+...+..+...|. .++.++|+.+++.+....
T Consensus 378 l~~----~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~ 452 (1157)
T PRK11447 378 RQV----DNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSI 452 (1157)
T ss_pred HHh----CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHH
Confidence 764 12345566667777888888888888887776 334445556666654 456788887777665321
Q ss_pred --------hhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC-hhHHHHHHHHHhcccchhhhHHHHHHHhhhcCCCch
Q 007519 297 --------AVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPL-NATFSVLFGAAGATANIDLGRQIHCVLMKTESESDL 367 (600)
Q Consensus 297 --------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 367 (600)
...+..+...+...|++++|+..|++..+. .|+ ...+..+...+.+.|+.++|...++.+.+.... +.
T Consensus 453 ~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~--~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~-~~ 529 (1157)
T PRK11447 453 DDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL--DPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPN-DP 529 (1157)
T ss_pred HHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CH
Confidence 123445666788899999999999999886 454 456677788899999999999999988765433 34
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhcCCCC----Ch---------hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChh
Q 007519 368 ILENCLISMYAKCGVIDNAYNIFSNMVSR----DL---------VSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSV 434 (600)
Q Consensus 368 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~---------~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~ 434 (600)
..+..+...+...++.++|...++.+... +. ..+..+...+...|+.++|..+++. .+++..
T Consensus 530 ~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~ 604 (1157)
T PRK11447 530 EQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTR 604 (1157)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCch
Confidence 44445556677889999999999988632 11 1122345678889999999999872 355566
Q ss_pred HHHHHHHHhcccCchHHHHHHHHHHHhhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHhCC-CCCC-HHHHHHHHHHH
Q 007519 435 TFLGILSACSHAGLVSRGWELFNAMFDVYKIQP-GPEHYVSMINLLGRAGKIKEAEEFVLRLP-FEPD-HRIWGALLGAC 511 (600)
Q Consensus 435 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~ 511 (600)
.+..+...+.+.|++++|.+.|+++.+. .| +...+..++.+|...|++++|++.++.+. ..|+ ...+..+..++
T Consensus 605 ~~~~La~~~~~~g~~~~A~~~y~~al~~---~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~ 681 (1157)
T PRK11447 605 IDLTLADWAQQRGDYAAARAAYQRVLTR---EPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAW 681 (1157)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHH
Confidence 6777888999999999999999999864 56 58889999999999999999999999876 4554 44555666677
Q ss_pred hhhhCCHHHHHHHHHHHHhhCCCCCC------cHHHHhHHHHhhCCcHHHHH-HHHHHhhcCCcc
Q 007519 512 GFCEGNAEIAEHAAKRLLELDPLNAP------AHVVLCNIYAASGRHVEEHK-LRMDMGLKGVRK 569 (600)
Q Consensus 512 ~~~~g~~~~a~~~~~~~~~~~p~~~~------~~~~l~~~~~~~g~~~~A~~-~~~~~~~~~~~~ 569 (600)
. ..|++++|+..++++++..|+++. .+..++.++...|++++|.. +.+.|...|+.+
T Consensus 682 ~-~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~~~~~ 745 (1157)
T PRK11447 682 A-ALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVASGITP 745 (1157)
T ss_pred H-hCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC
Confidence 7 899999999999999998775543 56667899999999999999 555555565643
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.97 E-value=3.9e-26 Score=251.94 Aligned_cols=539 Identities=11% Similarity=0.059 Sum_probs=323.6
Q ss_pred hhHHHHHHHhcCChhhHHHHhccCCC---CCcchHHHHHHHHHcCCChhHHHHHhhhcCC--CChhh-------------
Q 007519 14 LTSSITKYSKRGFIDEAKALFQLMPQ---RNVVSYNAMLSGFLQNGRLSEARRLFEEMPE--RNVVS------------- 75 (600)
Q Consensus 14 ~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~------------- 75 (600)
+-..+..+...++.+.|.+.++++.. .++.++..++..+...|+.++|.+.+++..+ |+...
T Consensus 31 Ll~q~~~~~~~~~~d~a~~~l~kl~~~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~ 110 (1157)
T PRK11447 31 LLEQVRLGEATHREDLVRQSLYRLELIDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTP 110 (1157)
T ss_pred HHHHHHHHHhhCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCC
Confidence 55667778889999999999999875 4577888899999999999999999999986 43322
Q ss_pred ----HHHHHHHHHhcCChHHHHHHhhcCCCCCceeHH----HHHHHHHHCCChhHHHHHhhcCCC--C-CcccHHHHHHH
Q 007519 76 ----WTAMICGLADAGRVCEARKLFEEMPERNVVSWN----SMVVGLIRNGELNEARKVFNSMPI--K-NVISWNAMIAG 144 (600)
Q Consensus 76 ----~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~ 144 (600)
...+...+.+.|++++|++.|+.+.+.++.... .........|+.++|++.|+++.+ | +...+..+...
T Consensus 111 ~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~l 190 (1157)
T PRK11447 111 EGRQALQQARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLALL 190 (1157)
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 233445788999999999999998873222211 111222245999999999999987 3 45577788899
Q ss_pred HHhcCCHhHHHHHHHhcccCCch------h-----------------HH-------------------------------
Q 007519 145 YVECCMMGEAIVLFEEMEERNVV------T-----------------WT------------------------------- 170 (600)
Q Consensus 145 ~~~~~~~~~A~~~~~~~~~~~~~------~-----------------~~------------------------------- 170 (600)
+...|+.++|.+.++++.+.... . +.
T Consensus 191 l~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~ 270 (1157)
T PRK11447 191 LFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAF 270 (1157)
T ss_pred HHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcch
Confidence 99999999999999987531100 0 00
Q ss_pred ---HHHHHHHhcCChhHHHHHHccCCC--C-CcchHHHHHHHHHhcCChhHHHHHHHHHHhhhcCCCCCCh---hhH---
Q 007519 171 ---SMISGYCRAGEVEEGYCLFRRMPR--K-NVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNV---QSC--- 238 (600)
Q Consensus 171 ---~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~~--- 238 (600)
.....+...|++++|+..|++..+ | +..++..+...+.+.|++++|+..|++..+. .|+. ..+
T Consensus 271 ~~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~-----~p~~~~~~~~~~l 345 (1157)
T PRK11447 271 RARAQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALAL-----DPHSSNRDKWESL 345 (1157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCccchhHHHHH
Confidence 001223334444444444444332 1 2334444444444444444444444444432 1110 000
Q ss_pred ---------HHHHHHHHhcCChhhHHHHhcccC---CCCchhHHHHHHHHHhcCChHHHHHHHhhCCC---CChhhHHHH
Q 007519 239 ---------NSMINGYIRFGRLEEAQNLFDTVP---VRDEISWTSMIDGYLSVGQVSNAYYLFHNMPD---RDAVAWTAM 303 (600)
Q Consensus 239 ---------~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l 303 (600)
......+.+.|++++|+..|+++. +.+...+..+...+...|++++|++.|+++.. .+...+..+
T Consensus 346 l~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L 425 (1157)
T PRK11447 346 LKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGL 425 (1157)
T ss_pred HHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 011223334444444444444443 22333334444444444444444444444332 122233333
Q ss_pred HHHHHhCCChhHHHHHHHHHHHCCCC--------CChhHHHHHHHHHhcccchhhhHHHHHHHhhhcCCCchhHHHHHHH
Q 007519 304 ISGLVQNELFVEATYLFMEMRAHGVP--------PLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLIS 375 (600)
Q Consensus 304 i~~~~~~g~~~~a~~~~~~m~~~g~~--------p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 375 (600)
...|. .++.++|+.+++.+...... .....+..+...+...|+.++|...++.+.+.... +..++..+..
T Consensus 426 ~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~ 503 (1157)
T PRK11447 426 ANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQ 503 (1157)
T ss_pred HHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 33332 23344444444332211000 00011222333444556666666666665554332 3444555666
Q ss_pred HHHhcCChHHHHHHHhcCC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChh---------HHHHHHHHh
Q 007519 376 MYAKCGVIDNAYNIFSNMV---SRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSV---------TFLGILSAC 443 (600)
Q Consensus 376 ~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~---------~~~~l~~~~ 443 (600)
.|.+.|++++|...++++. +.+...+..+...+...++.++|+..++.+......++.. .+......+
T Consensus 504 ~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l 583 (1157)
T PRK11447 504 DLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRL 583 (1157)
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHH
Confidence 6666666666666666553 2234444444444555666666666665543221111111 112334556
Q ss_pred cccCchHHHHHHHHHHHhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHhhhhCCHHHH
Q 007519 444 SHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLP-FEP-DHRIWGALLGACGFCEGNAEIA 521 (600)
Q Consensus 444 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~g~~~~a 521 (600)
...|+.++|.++++. ..+++..+..++..+.+.|++++|++.+++.. ..| +...+..+...+. ..|+.++|
T Consensus 584 ~~~G~~~eA~~~l~~------~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~-~~g~~~eA 656 (1157)
T PRK11447 584 RDSGKEAEAEALLRQ------QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDI-AQGDLAAA 656 (1157)
T ss_pred HHCCCHHHHHHHHHh------CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HCCCHHHH
Confidence 677778888777661 12356677889999999999999999998875 455 4667788888888 89999999
Q ss_pred HHHHHHHHhhCCCCCCcHHHHhHHHHhhCCcHHHHHHHHHHhhcC
Q 007519 522 EHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKG 566 (600)
Q Consensus 522 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 566 (600)
+..++++.+..|+++.++..++.++...|++++|.++++.+....
T Consensus 657 ~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 701 (1157)
T PRK11447 657 RAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQA 701 (1157)
T ss_pred HHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhC
Confidence 999999999999889999999999999999999999888776543
No 11
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.96 E-value=1.3e-23 Score=221.37 Aligned_cols=529 Identities=11% Similarity=0.027 Sum_probs=369.0
Q ss_pred HHHhcCChhhHHHHhccCCC--C-CcchHHHHHHHHHcCCChhHHHHHhhhcCC--CChhhHHHHHHHHHhcCChHHHHH
Q 007519 20 KYSKRGFIDEAKALFQLMPQ--R-NVVSYNAMLSGFLQNGRLSEARRLFEEMPE--RNVVSWTAMICGLADAGRVCEARK 94 (600)
Q Consensus 20 ~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~ 94 (600)
.+...|++++|+..|+...+ | +..++..|...|...|++++|+..+++..+ |+-..|..++..+ +++++|..
T Consensus 53 ~~~~~Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i---~~~~kA~~ 129 (987)
T PRK09782 53 KAQKNNDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAI---PVEVKSVT 129 (987)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHh---ccChhHHH
Confidence 33455999999999999875 3 466788899999999999999999999986 4333333333222 88999999
Q ss_pred HhhcCCC--C-CceeHHHHHHH--------HHHCCChhHHHHHhhcCCCCC--cccHHHH-HHHHHhcCCHhHHHHHHHh
Q 007519 95 LFEEMPE--R-NVVSWNSMVVG--------LIRNGELNEARKVFNSMPIKN--VISWNAM-IAGYVECCMMGEAIVLFEE 160 (600)
Q Consensus 95 ~~~~~~~--~-~~~~~~~l~~~--------~~~~~~~~~a~~~~~~~~~~~--~~~~~~l-~~~~~~~~~~~~A~~~~~~ 160 (600)
+++++.+ | +...+..+... |.+.++..++++ .+...|+ +.+.... .++|...|++++|++++.+
T Consensus 130 ~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~--lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~ 207 (987)
T PRK09782 130 TVEELLAQQKACDAVPTLRCRSEVGQNALRLAQLPVARAQLN--DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNE 207 (987)
T ss_pred HHHHHHHhCCCChhHHHHHHHHhhccchhhhhhHHHHHHHHH--HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 9999876 4 45556666665 667766666666 3333343 4434444 8899999999999999999
Q ss_pred cccC---CchhHHHHHHHHHh-cCChhHHHHHHccCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhhhcCCCCCChh
Q 007519 161 MEER---NVVTWTSMISGYCR-AGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQ 236 (600)
Q Consensus 161 ~~~~---~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 236 (600)
+.+. +......|..+|.. .++ +.+..+++...+.+...+..++..+.+.|+.++|..+++++.... .. .|+..
T Consensus 208 L~k~~pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~-~~-~~~~~ 284 (987)
T PRK09782 208 ARQQNTLSAAERRQWFDVLLAGQLD-DRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIENKPLF-TT-DAQEK 284 (987)
T ss_pred HHhcCCCCHHHHHHHHHHHHHhhCH-HHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccc-cC-CCccH
Confidence 8853 33345567777877 466 888888776555688889999999999999999999999886541 11 11111
Q ss_pred hH------------------------------HHHHHHHHhcCChhhHHHHhcccC------------------------
Q 007519 237 SC------------------------------NSMINGYIRFGRLEEAQNLFDTVP------------------------ 262 (600)
Q Consensus 237 ~~------------------------------~~l~~~~~~~~~~~~a~~~~~~~~------------------------ 262 (600)
++ ..++..+.+.++++.++++...-.
T Consensus 285 ~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~ 364 (987)
T PRK09782 285 SWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRL 364 (987)
T ss_pred HHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHH
Confidence 11 112455566677776666643211
Q ss_pred --------CCCchhHHHHHHHHHhcCChHHHHHHHhhCCC--C----ChhhHHHHHHHHHhCCC---hhHHHHH------
Q 007519 263 --------VRDEISWTSMIDGYLSVGQVSNAYYLFHNMPD--R----DAVAWTAMISGLVQNEL---FVEATYL------ 319 (600)
Q Consensus 263 --------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~----~~~~~~~li~~~~~~g~---~~~a~~~------ 319 (600)
+.+....-.+.-...+.|+.++|.++|+.... + +....+.++..|.+.+. ..+++.+
T Consensus 365 ~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~ 444 (987)
T PRK09782 365 ARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPL 444 (987)
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhcccccc
Confidence 11222222333345667889999998887755 1 22234466777776655 3333322
Q ss_pred ----------------HHHHHHC-CCCC---ChhHHHHHHHHHhcccchhhhHHHHHHHhhhcCCCchhHHHHHHHHHHh
Q 007519 320 ----------------FMEMRAH-GVPP---LNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAK 379 (600)
Q Consensus 320 ----------------~~~m~~~-g~~p---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 379 (600)
++..... +..| +...+..+..++.. ++.++|...+....... |+......+...+..
T Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~ 521 (987)
T PRK09782 445 AEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQ 521 (987)
T ss_pred chhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHH
Confidence 1111111 1123 34455555555554 78888888777666554 343333344555568
Q ss_pred cCChHHHHHHHhcCC--CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccCchHHHHHHHH
Q 007519 380 CGVIDNAYNIFSNMV--SRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFN 457 (600)
Q Consensus 380 ~~~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 457 (600)
.|++++|...|+++. +|+...+..+..++.+.|+.++|...+++..+.. +++...+..+...+...|++++|...++
T Consensus 522 ~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~ 600 (987)
T PRK09782 522 VEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLT 600 (987)
T ss_pred CCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 999999999998775 3455566777788889999999999999998753 2233333334444556699999999999
Q ss_pred HHHhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhCC-CCCCH-HHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCC
Q 007519 458 AMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLP-FEPDH-RIWGALLGACGFCEGNAEIAEHAAKRLLELDPLN 535 (600)
Q Consensus 458 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~-~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~ 535 (600)
++.+. .|+...+..++.++.+.|++++|...+++.. ..|+. ..+..+...+. ..|+.++|+..++++++..|++
T Consensus 601 ~AL~l---~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~-~~G~~eeAi~~l~~AL~l~P~~ 676 (987)
T PRK09782 601 RSLNI---APSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALW-DSGDIAQSREMLERAHKGLPDD 676 (987)
T ss_pred HHHHh---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCC
Confidence 99854 6778889999999999999999999998875 66654 45566666777 8999999999999999999999
Q ss_pred CCcHHHHhHHHHhhCCcHHHHHHHHHHhh
Q 007519 536 APAHVVLCNIYAASGRHVEEHKLRMDMGL 564 (600)
Q Consensus 536 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 564 (600)
+.++..++.++...|++++|...++...+
T Consensus 677 ~~a~~nLA~al~~lGd~~eA~~~l~~Al~ 705 (987)
T PRK09782 677 PALIRQLAYVNQRLDDMAATQHYARLVID 705 (987)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 99999999999999999999997766543
No 12
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.95 E-value=1.7e-22 Score=212.99 Aligned_cols=535 Identities=11% Similarity=-0.000 Sum_probs=389.8
Q ss_pred CCCccchhHHHHHHHhcCChhhHHHHhccCCC--CCcchHHHHHHHHHcCCChhHHHHHhhhcCC--C-ChhhHHHHHHH
Q 007519 8 KSLVVHLTSSITKYSKRGFIDEAKALFQLMPQ--RNVVSYNAMLSGFLQNGRLSEARRLFEEMPE--R-NVVSWTAMICG 82 (600)
Q Consensus 8 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~ 82 (600)
|.++.++..++..|...|++++|+..+++..+ |+-..|..++..+ +++++|..+++++.+ | +..++..+...
T Consensus 75 P~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i---~~~~kA~~~ye~l~~~~P~n~~~~~~la~~ 151 (987)
T PRK09782 75 PDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAI---PVEVKSVTTVEELLAQQKACDAVPTLRCRS 151 (987)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHh---ccChhHHHHHHHHHHhCCCChhHHHHHHHH
Confidence 44577889999999999999999999999986 5444444444333 899999999999986 3 35566666666
Q ss_pred --------HHhcCChHHHHHHhhcCCCCC--ceeHH-HHHHHHHHCCChhHHHHHhhcCCC--C-CcccHHHHHHHHHh-
Q 007519 83 --------LADAGRVCEARKLFEEMPERN--VVSWN-SMVVGLIRNGELNEARKVFNSMPI--K-NVISWNAMIAGYVE- 147 (600)
Q Consensus 83 --------~~~~g~~~~A~~~~~~~~~~~--~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~- 147 (600)
|.+.+...++++ .+...|+ +.... .+.+.|.+.|++++|+.+++++.+ | +..-...+..+|..
T Consensus 152 ~~~~~~l~y~q~eqAl~AL~--lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~pl~~~~~~~L~~ay~q~ 229 (987)
T PRK09782 152 EVGQNALRLAQLPVARAQLN--DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNTLSAAERRQWFDVLLAG 229 (987)
T ss_pred hhccchhhhhhHHHHHHHHH--HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Confidence 777766666666 3333354 33334 448999999999999999999987 3 33345566677777
Q ss_pred cCCHhHHHHHHHhcccCCchhHHHHHHHHHhcCChhHHHHHHccCCC-----CCcch-----------------------
Q 007519 148 CCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPR-----KNVVS----------------------- 199 (600)
Q Consensus 148 ~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~----------------------- 199 (600)
.++ +.+..+++...+.++..+..++..|.+.|+.++|.++++++.. |+..+
T Consensus 230 l~~-~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~ 308 (987)
T PRK09782 230 QLD-DRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQF 308 (987)
T ss_pred hCH-HHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhh
Confidence 477 8888887765567888899999999999999999999988763 11111
Q ss_pred -------HHHHHHHHHhcCChhHHHHHHH-----------------------------HHHhhhcCCCCCChhhHHHHHH
Q 007519 200 -------WTAMIGGFAWNGFHKESLLLFI-----------------------------EMKGICDNGNNCNVQSCNSMIN 243 (600)
Q Consensus 200 -------~~~li~~~~~~~~~~~a~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~l~~ 243 (600)
...++..+.+.++++.+.++.. .|.+. .+-+......+.-
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~----~~~~~~~l~q~~~ 384 (987)
T PRK09782 309 ADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQ----EPANLTRLDQLTW 384 (987)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhc----CCCCHHHHHHHHH
Confidence 1222445556666665554421 11110 0113333333444
Q ss_pred HHHhcCChhhHHHHhcccCCC------CchhHHHHHHHHHhcCC---hHHHHHH-------------------------H
Q 007519 244 GYIRFGRLEEAQNLFDTVPVR------DEISWTSMIDGYLSVGQ---VSNAYYL-------------------------F 289 (600)
Q Consensus 244 ~~~~~~~~~~a~~~~~~~~~~------~~~~~~~l~~~~~~~~~---~~~A~~~-------------------------~ 289 (600)
...+.|+.++|..+++...+. +.....-++..|.+.+. ..++..+ +
T Consensus 385 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (987)
T PRK09782 385 QLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAI 464 (987)
T ss_pred HHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHH
Confidence 456788999999999888741 12234466677766655 3333222 1
Q ss_pred hhCCC---C--ChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhcccchhhhHHHHHHHhhhcCC
Q 007519 290 HNMPD---R--DAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESE 364 (600)
Q Consensus 290 ~~~~~---~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 364 (600)
..... + +...|..+..++.. ++.++|+..+.+.... .|+......+...+...|+.+.|...++.+... +
T Consensus 465 ~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~ 539 (987)
T PRK09782 465 VRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--D 539 (987)
T ss_pred HHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--C
Confidence 11111 2 45677777777776 8899999988888775 577655444455667899999999999987554 3
Q ss_pred CchhHHHHHHHHHHhcCChHHHHHHHhcCCCCCh---hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHH
Q 007519 365 SDLILENCLISMYAKCGVIDNAYNIFSNMVSRDL---VSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILS 441 (600)
Q Consensus 365 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~ 441 (600)
|+...+..+..++.+.|++++|...++.....++ ..+..+.......|++++|...+++..+. .|+...+..+..
T Consensus 540 p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~ 617 (987)
T PRK09782 540 MSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARAT 617 (987)
T ss_pred CCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHH
Confidence 3334456677888999999999999998874332 23333334445569999999999999874 677888888899
Q ss_pred HhcccCchHHHHHHHHHHHhhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHhCC-CCCC-HHHHHHHHHHHhhhhCCH
Q 007519 442 ACSHAGLVSRGWELFNAMFDVYKIQP-GPEHYVSMINLLGRAGKIKEAEEFVLRLP-FEPD-HRIWGALLGACGFCEGNA 518 (600)
Q Consensus 442 ~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~~g~~ 518 (600)
++.+.|++++|...++++... .| +...++.++.++...|++++|++.+++.. ..|+ ...+..+..++. ..|++
T Consensus 618 ~l~~lG~~deA~~~l~~AL~l---~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~-~lGd~ 693 (987)
T PRK09782 618 IYRQRHNVPAAVSDLRAALEL---EPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQ-RLDDM 693 (987)
T ss_pred HHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HCCCH
Confidence 999999999999999999864 67 57888999999999999999999999864 5564 566777777888 99999
Q ss_pred HHHHHHHHHHHhhCCCCCCcHHHHhHHHHhhCCcHHHHHHHHHHh
Q 007519 519 EIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMG 563 (600)
Q Consensus 519 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 563 (600)
++|+..+++++++.|++..+....++...+..+++.|.+-++...
T Consensus 694 ~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~ 738 (987)
T PRK09782 694 AATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRW 738 (987)
T ss_pred HHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999554443
No 13
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.93 E-value=1e-22 Score=190.54 Aligned_cols=432 Identities=15% Similarity=0.142 Sum_probs=329.9
Q ss_pred HHHHHHHHHHCCChhHHHHHhhcCCC--C-CcccHHHHHHHHHhcCCHhHHHHHHHhccc---CCchhHHHHHHHHHhcC
Q 007519 107 WNSMVVGLIRNGELNEARKVFNSMPI--K-NVISWNAMIAGYVECCMMGEAIVLFEEMEE---RNVVTWTSMISGYCRAG 180 (600)
Q Consensus 107 ~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g 180 (600)
...|..-..+.|++.+|++.-+..-. | +......+-..+.+..+.+.....-....+ .-..+|..+...+...|
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~kerg 130 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKERG 130 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHhc
Confidence 45566666677888887775554433 1 222222333445555555554443333332 22457777888888888
Q ss_pred ChhHHHHHHccCCC---CCcchHHHHHHHHHhcCChhHHHHHHHHHHhhhcCCCCCChhhHHH-HHHHHHhcCChhhHHH
Q 007519 181 EVEEGYCLFRRMPR---KNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNS-MINGYIRFGRLEEAQN 256 (600)
Q Consensus 181 ~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~a~~ 256 (600)
++++|+..++.+.+ ..+..|..+..++...|+.+.|.+.|.+.++. .|+.....+ +...+...|++++|..
T Consensus 131 ~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alql-----nP~l~ca~s~lgnLlka~Grl~ea~~ 205 (966)
T KOG4626|consen 131 QLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQL-----NPDLYCARSDLGNLLKAEGRLEEAKA 205 (966)
T ss_pred hHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc-----CcchhhhhcchhHHHHhhcccchhHH
Confidence 88888888887765 24457888888888888888888888888754 666544333 4444556788888877
Q ss_pred HhcccC---CCCchhHHHHHHHHHhcCChHHHHHHHhhCCCCC---hhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCC
Q 007519 257 LFDTVP---VRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRD---AVAWTAMISGLVQNELFVEATYLFMEMRAHGVPP 330 (600)
Q Consensus 257 ~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 330 (600)
-|.+.. +.-...|+.|.-.+...|++..|+..|++..+-| ..+|-.|...|-..+.+++|+..|.+.... .|
T Consensus 206 cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l--rp 283 (966)
T KOG4626|consen 206 CYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL--RP 283 (966)
T ss_pred HHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc--CC
Confidence 776665 2234568888888888888888888888876633 357788888888888999999888887765 45
Q ss_pred C-hhHHHHHHHHHhcccchhhhHHHHHHHhhhcCCCchhHHHHHHHHHHhcCChHHHHHHHhcCC---CCChhhHHHHHH
Q 007519 331 L-NATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMV---SRDLVSWNSMVM 406 (600)
Q Consensus 331 ~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~ 406 (600)
+ ...+..+...|...|.++.|...+++..+.... =...|+.|..++...|++.+|.+.|.+.. +....+.+.|..
T Consensus 284 n~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgn 362 (966)
T KOG4626|consen 284 NHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGN 362 (966)
T ss_pred cchhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHH
Confidence 4 456666777788889999999999888775433 25678999999999999999999999886 445678889999
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCh-hHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCCC-cchHHHHHHHHhhcCC
Q 007519 407 GFSHHGLANETLKVFESMLESGTHPNS-VTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPG-PEHYVSMINLLGRAGK 484 (600)
Q Consensus 407 ~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~ 484 (600)
.+...|.+++|..+|....+ +.|.- ..++.|...|-+.|++++|+..++++. .+.|+ ...|+.++..|...|+
T Consensus 363 i~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal---rI~P~fAda~~NmGnt~ke~g~ 437 (966)
T KOG4626|consen 363 IYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEAL---RIKPTFADALSNMGNTYKEMGD 437 (966)
T ss_pred HHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHH---hcCchHHHHHHhcchHHHHhhh
Confidence 99999999999999999886 56664 678889999999999999999999998 57886 7899999999999999
Q ss_pred hHHHHHHHHhCC-CCCC-HHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCCCcHHHHhHHHHhhCCc
Q 007519 485 IKEAEEFVLRLP-FEPD-HRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRH 552 (600)
Q Consensus 485 ~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 552 (600)
.+.|.+.+.+.. ..|. ...++.+...+. ..|++++|+..|+.+++++|+.|.+|..++.++---.+|
T Consensus 438 v~~A~q~y~rAI~~nPt~AeAhsNLasi~k-DsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw 506 (966)
T KOG4626|consen 438 VSAAIQCYTRAIQINPTFAEAHSNLASIYK-DSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDW 506 (966)
T ss_pred HHHHHHHHHHHHhcCcHHHHHHhhHHHHhh-ccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcc
Confidence 999999998875 6775 457888888999 999999999999999999999999999988876544443
No 14
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.90 E-value=4.6e-21 Score=179.62 Aligned_cols=412 Identities=12% Similarity=0.125 Sum_probs=335.1
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHhcccCCc---hhHHHHHHHHHhcCChhHHHHHHccCCC---CCcchHHHHHHHHHhcC
Q 007519 138 WNAMIAGYVECCMMGEAIVLFEEMEERNV---VTWTSMISGYCRAGEVEEGYCLFRRMPR---KNVVSWTAMIGGFAWNG 211 (600)
Q Consensus 138 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~ 211 (600)
...|..-..+.|++.+|++.-...-..|+ ...-.+-..+....+++....--....+ ....+|..+...+-..|
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~kerg 130 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKERG 130 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHhc
Confidence 45566667788999999987766553222 2222233455566666655443332222 24468999999999999
Q ss_pred ChhHHHHHHHHHHhhhcCCCCCC-hhhHHHHHHHHHhcCChhhHHHHhcccCCCCchh---HHHHHHHHHhcCChHHHHH
Q 007519 212 FHKESLLLFIEMKGICDNGNNCN-VQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEIS---WTSMIDGYLSVGQVSNAYY 287 (600)
Q Consensus 212 ~~~~a~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~A~~ 287 (600)
++++|+..++.+.+. .|+ ...|..+..++...|+.+.|.+.|.....-++.. .+.+...+...|++.+|..
T Consensus 131 ~~~~al~~y~~aiel-----~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~ 205 (966)
T KOG4626|consen 131 QLQDALALYRAAIEL-----KPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKA 205 (966)
T ss_pred hHHHHHHHHHHHHhc-----CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHH
Confidence 999999999999975 554 7789999999999999999999999888555543 3445666777899999999
Q ss_pred HHhhCCC--C-ChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCh-hHHHHHHHHHhcccchhhhHHHHHHHhhhcC
Q 007519 288 LFHNMPD--R-DAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLN-ATFSVLFGAAGATANIDLGRQIHCVLMKTES 363 (600)
Q Consensus 288 ~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 363 (600)
.|.+..+ | -.++|+.|...+..+|+...|++.|++.++. .|+- ..|..|-..|...+.++.|...+..+.....
T Consensus 206 cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrp 283 (966)
T KOG4626|consen 206 CYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRP 283 (966)
T ss_pred HHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCC
Confidence 8887665 3 2468999999999999999999999999875 5654 4677888888888899999988887766543
Q ss_pred CCchhHHHHHHHHHHhcCChHHHHHHHhcCC--CCC-hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hhHHHHH
Q 007519 364 ESDLILENCLISMYAKCGVIDNAYNIFSNMV--SRD-LVSWNSMVMGFSHHGLANETLKVFESMLESGTHPN-SVTFLGI 439 (600)
Q Consensus 364 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~l 439 (600)
. ....+..+...|-.+|.++-|.+.|++.. .|+ ...|+.|..++...|++.+|...+.+.... .|+ ....+.|
T Consensus 284 n-~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l--~p~hadam~NL 360 (966)
T KOG4626|consen 284 N-HAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRL--CPNHADAMNNL 360 (966)
T ss_pred c-chhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHh--CCccHHHHHHH
Confidence 2 45666777788899999999999999987 343 578999999999999999999999999874 454 4678899
Q ss_pred HHHhcccCchHHHHHHHHHHHhhcCCCCC-cchHHHHHHHHhhcCChHHHHHHHHhCC-CCCCH-HHHHHHHHHHhhhhC
Q 007519 440 LSACSHAGLVSRGWELFNAMFDVYKIQPG-PEHYVSMINLLGRAGKIKEAEEFVLRLP-FEPDH-RIWGALLGACGFCEG 516 (600)
Q Consensus 440 ~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~-~~~~~l~~~~~~~~g 516 (600)
...+...|.+++|.++|....+ +.|. ....+.|+..|-.+|++++|...+++.. ++|.. ..++.+...+. ..|
T Consensus 361 gni~~E~~~~e~A~~ly~~al~---v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~k-e~g 436 (966)
T KOG4626|consen 361 GNIYREQGKIEEATRLYLKALE---VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYK-EMG 436 (966)
T ss_pred HHHHHHhccchHHHHHHHHHHh---hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHH-Hhh
Confidence 9999999999999999999874 5775 7789999999999999999999998864 78874 57899999999 999
Q ss_pred CHHHHHHHHHHHHhhCCCCCCcHHHHhHHHHhhCCcHHHHHHHHHHh
Q 007519 517 NAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMG 563 (600)
Q Consensus 517 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 563 (600)
+...|++.+.+++.++|.-+.++..|+.+|...|++.+|++-++...
T Consensus 437 ~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aL 483 (966)
T KOG4626|consen 437 DVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTAL 483 (966)
T ss_pred hHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHH
Confidence 99999999999999999889999999999999999999999554433
No 15
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.89 E-value=1.5e-19 Score=187.68 Aligned_cols=249 Identities=15% Similarity=0.046 Sum_probs=176.0
Q ss_pred CCChhHHHHHHHHHHHCC-CCCC-hhHHHHHHHHHhcccchhhhHHHHHHHhhhcCCCchhHHHHHHHHHHhcCChHHHH
Q 007519 310 NELFVEATYLFMEMRAHG-VPPL-NATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAY 387 (600)
Q Consensus 310 ~g~~~~a~~~~~~m~~~g-~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 387 (600)
.+++++|++.|+.....+ ..|+ ...+..+...+...|+++.|...++...+.... ....|..+...+...|++++|.
T Consensus 307 ~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~-~~~~~~~la~~~~~~g~~~eA~ 385 (615)
T TIGR00990 307 DESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPR-VTQSYIKRASMNLELGDPDKAE 385 (615)
T ss_pred hhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHCCCHHHHH
Confidence 356777777777776654 2233 234555555666777777777777766654322 3445666777777888888888
Q ss_pred HHHhcCC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccCchHHHHHHHHHHHhhcC
Q 007519 388 NIFSNMV---SRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYK 464 (600)
Q Consensus 388 ~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 464 (600)
..|+++. +.+...|..+...+...|++++|+..|++..+.. +.+...+..+..++.+.|++++|...++++.+.
T Consensus 386 ~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~-- 462 (615)
T TIGR00990 386 EDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN-- 462 (615)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--
Confidence 8887765 4456778888888888888888888888888742 334556666777788888888888888888753
Q ss_pred CCC-CcchHHHHHHHHhhcCChHHHHHHHHhCC-CCCCH-HH-------HHHHHHHHhhhhCCHHHHHHHHHHHHhhCCC
Q 007519 465 IQP-GPEHYVSMINLLGRAGKIKEAEEFVLRLP-FEPDH-RI-------WGALLGACGFCEGNAEIAEHAAKRLLELDPL 534 (600)
Q Consensus 465 ~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~-~~-------~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~ 534 (600)
.| ++..++.++.++...|++++|.+.|++.. ..|+. .. ++.....+. ..|++++|+..++++++++|+
T Consensus 463 -~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~-~~~~~~eA~~~~~kAl~l~p~ 540 (615)
T TIGR00990 463 -FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQ-WKQDFIEAENLCEKALIIDPE 540 (615)
T ss_pred -CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHH-HhhhHHHHHHHHHHHHhcCCC
Confidence 45 46778888888888888888888887753 33321 11 111122223 458888899999998888888
Q ss_pred CCCcHHHHhHHHHhhCCcHHHHHHHHHHhh
Q 007519 535 NAPAHVVLCNIYAASGRHVEEHKLRMDMGL 564 (600)
Q Consensus 535 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 564 (600)
+..++..++.++.+.|++++|.++++...+
T Consensus 541 ~~~a~~~la~~~~~~g~~~eAi~~~e~A~~ 570 (615)
T TIGR00990 541 CDIAVATMAQLLLQQGDVDEALKLFERAAE 570 (615)
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 878888888888889999998887766543
No 16
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.89 E-value=2.3e-19 Score=177.18 Aligned_cols=547 Identities=12% Similarity=0.068 Sum_probs=366.6
Q ss_pred CCCccchhHHHHHHHhcCChhhHHHHhccCCC------CCcchHHHHHHHHHcCCChhHHHHHhhhcCCCChhhHHHHHH
Q 007519 8 KSLVVHLTSSITKYSKRGFIDEAKALFQLMPQ------RNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMIC 81 (600)
Q Consensus 8 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~ 81 (600)
|+++-.+-.=+......|++..|+.+|..... ||+ ...+..++.+.|+.+.|+..|+.+++-|+...++++.
T Consensus 161 p~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~--rIgig~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~ 238 (1018)
T KOG2002|consen 161 PDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADV--RIGIGHCFWKLGMSEKALLAFERALQLDPTCVSALVA 238 (1018)
T ss_pred CcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCc--cchhhhHHHhccchhhHHHHHHHHHhcChhhHHHHHH
Confidence 33443343333444556778888888887543 333 2334456667788888888888887744433333332
Q ss_pred ---HHHhcC---ChHHHHHHhhcCCC---CCceeHHHHHHHHHHCCChhHHHHHhhcCCCC------CcccHHHHHHHHH
Q 007519 82 ---GLADAG---RVCEARKLFEEMPE---RNVVSWNSMVVGLIRNGELNEARKVFNSMPIK------NVISWNAMIAGYV 146 (600)
Q Consensus 82 ---~~~~~g---~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~l~~~~~ 146 (600)
.-.... .+..+...+...-. .|+...+.|...|.-.|+++.+.++...+... -..+|..+.++|-
T Consensus 239 L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~H 318 (1018)
T KOG2002|consen 239 LGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYH 318 (1018)
T ss_pred HHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 222233 34455555554433 56777888888888888888888888777651 2345777888888
Q ss_pred hcCCHhHHHHHHHhccc--CCch--hHHHHHHHHHhcCChhHHHHHHccCCC--C-CcchHHHHHHHHHhcC----ChhH
Q 007519 147 ECCMMGEAIVLFEEMEE--RNVV--TWTSMISGYCRAGEVEEGYCLFRRMPR--K-NVVSWTAMIGGFAWNG----FHKE 215 (600)
Q Consensus 147 ~~~~~~~A~~~~~~~~~--~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~----~~~~ 215 (600)
..|++++|...|-+..+ ++.. .+--+...+.+.|+++.+...|+++.. | +..+...|...|...+ ..+.
T Consensus 319 a~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~ 398 (1018)
T KOG2002|consen 319 AQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDK 398 (1018)
T ss_pred hhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHH
Confidence 88888888888887774 3322 234567788888888888888887764 3 3345555555555553 4566
Q ss_pred HHHHHHHHHhhhcCCCCCChhhHHHHHHHHHhcCChhhHHHHhcccC--------CCCchhHHHHHHHHHhcCChHHHHH
Q 007519 216 SLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVP--------VRDEISWTSMIDGYLSVGQVSNAYY 287 (600)
Q Consensus 216 a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--------~~~~~~~~~l~~~~~~~~~~~~A~~ 287 (600)
|..++.+..+. .+.|...|..+...+....- ..++..|..+. +..+...|.+...+...|.+..|..
T Consensus 399 a~~~l~K~~~~----~~~d~~a~l~laql~e~~d~-~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~ 473 (1018)
T KOG2002|consen 399 ASNVLGKVLEQ----TPVDSEAWLELAQLLEQTDP-WASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALE 473 (1018)
T ss_pred HHHHHHHHHhc----ccccHHHHHHHHHHHHhcCh-HHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHH
Confidence 77777776653 24456667666665554433 22244433322 5567778888888888888888888
Q ss_pred HHhhCCC-------CCh------hhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHH-HHHHHhcccchhhhHH
Q 007519 288 LFHNMPD-------RDA------VAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSV-LFGAAGATANIDLGRQ 353 (600)
Q Consensus 288 ~~~~~~~-------~~~------~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~-l~~~~~~~~~~~~a~~ 353 (600)
.|..... +|. .+-..+...+-..++++.|.+.|....+. .|+-..... +.......++...|..
T Consensus 474 ~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~~~ea~~ 551 (1018)
T KOG2002|consen 474 HFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARDKNNLYEASL 551 (1018)
T ss_pred HHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHhccCcHHHHH
Confidence 8876543 122 12333555666778888888999888876 566554333 3323334567777888
Q ss_pred HHHHHhhhcCCCchhHHHHHHHHHHhcCChHHHHHHHhcCC-----CCChhhHHHHHHHHH------------hcCChHH
Q 007519 354 IHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMV-----SRDLVSWNSMVMGFS------------HHGLANE 416 (600)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-----~~~~~~~~~l~~~~~------------~~~~~~~ 416 (600)
.+.......- .++..++.+...+.+...+..|..-|..+. .+|..+.-.|.+.+. ..+..++
T Consensus 552 ~lk~~l~~d~-~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~K 630 (1018)
T KOG2002|consen 552 LLKDALNIDS-SNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEK 630 (1018)
T ss_pred HHHHHHhccc-CCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHH
Confidence 8776665432 245555666778888888877777554443 335554445555443 2345678
Q ss_pred HHHHHHHHHHcCCCCChhHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhCC
Q 007519 417 TLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLP 496 (600)
Q Consensus 417 a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 496 (600)
|+++|.+..... +-|...-+.+.-.++..|++.+|..+|....+. ..-...+|..++.+|..+|++-.|+++|+..-
T Consensus 631 Alq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa--~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~l 707 (1018)
T KOG2002|consen 631 ALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREA--TSDFEDVWLNLAHCYVEQGQYRLAIQMYENCL 707 (1018)
T ss_pred HHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHH--HhhCCceeeeHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999888753 556677778888889999999999999999885 23356689999999999999999999998753
Q ss_pred ----CCCCHHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCCCcHHHHhHHHHh-------------------hCCcH
Q 007519 497 ----FEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAA-------------------SGRHV 553 (600)
Q Consensus 497 ----~~p~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~-------------------~g~~~ 553 (600)
...+..+.+.|..++. ..|++.+|.+.+..+..+.|.++..-..++.+..+ .+..+
T Consensus 708 kkf~~~~~~~vl~~Lara~y-~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~lr~~k~t~eev~~a~~~le 786 (1018)
T KOG2002|consen 708 KKFYKKNRSEVLHYLARAWY-EAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLAESILRLEKRTLEEVLEAVKELE 786 (1018)
T ss_pred HHhcccCCHHHHHHHHHHHH-HhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHH
Confidence 3456778889999998 99999999999999999999998887777766544 34556
Q ss_pred HHHHHHHHHhhcCCc
Q 007519 554 EEHKLRMDMGLKGVR 568 (600)
Q Consensus 554 ~A~~~~~~~~~~~~~ 568 (600)
.|.++++.|...+-+
T Consensus 787 ~a~r~F~~ls~~~d~ 801 (1018)
T KOG2002|consen 787 EARRLFTELSKNGDK 801 (1018)
T ss_pred HHHHHHHHHHhcCCC
Confidence 777777777765543
No 17
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.88 E-value=1.7e-19 Score=178.08 Aligned_cols=532 Identities=12% Similarity=0.079 Sum_probs=383.8
Q ss_pred HHhcCCh--hhHHHHhccCCC---CCcchHHHHHHHHHcCCChhHHHHHhhhcCC------CChhhHHHHHHHHHhcCCh
Q 007519 21 YSKRGFI--DEAKALFQLMPQ---RNVVSYNAMLSGFLQNGRLSEARRLFEEMPE------RNVVSWTAMICGLADAGRV 89 (600)
Q Consensus 21 ~~~~g~~--~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~------~~~~~~~~l~~~~~~~g~~ 89 (600)
|...|.. +.|...|....+ +|+-.+..-+......|++..|+.+|..+.. +|+.. .+..++.+.|+.
T Consensus 138 ~l~~~~~~~~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rI--gig~Cf~kl~~~ 215 (1018)
T KOG2002|consen 138 LLLEGDKSMDDADAQFHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRI--GIGHCFWKLGMS 215 (1018)
T ss_pred hhhcCCccHHHHHHHHHHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccc--hhhhHHHhccch
Confidence 3334444 778887877765 3444444444555688999999999999764 34332 345667799999
Q ss_pred HHHHHHhhcCCCCCceeHHHHHHH---HHHC---CChhHHHHHhhcCCC---CCcccHHHHHHHHHhcCCHhHHHHHHHh
Q 007519 90 CEARKLFEEMPERNVVSWNSMVVG---LIRN---GELNEARKVFNSMPI---KNVISWNAMIAGYVECCMMGEAIVLFEE 160 (600)
Q Consensus 90 ~~A~~~~~~~~~~~~~~~~~l~~~---~~~~---~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 160 (600)
+.|+..|++..+-|+..-++++.. -... ..+..+..++...-. .++...+.|.+.|.-.|++..+..+...
T Consensus 216 ~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ 295 (1018)
T KOG2002|consen 216 EKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEH 295 (1018)
T ss_pred hhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHH
Confidence 999999999998665444433322 2222 334456666665543 6888999999999999999999999988
Q ss_pred cccCC------chhHHHHHHHHHhcCChhHHHHHHccCCC--CC--cchHHHHHHHHHhcCChhHHHHHHHHHHhhhcCC
Q 007519 161 MEERN------VVTWTSMISGYCRAGEVEEGYCLFRRMPR--KN--VVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNG 230 (600)
Q Consensus 161 ~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~ 230 (600)
+...+ ...|--+..+|...|++++|..+|-...+ ++ +..+-.+.+.+.+.|+.+.+...|+.+...
T Consensus 296 ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~---- 371 (1018)
T KOG2002|consen 296 AIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQ---- 371 (1018)
T ss_pred HHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHh----
Confidence 87533 34577889999999999999999987765 33 345667889999999999999999999975
Q ss_pred CCCChhhHHHHHHHHHhcC----ChhhHHHHhcccC---CCCchhHHHHHHHHHhcCC------hHHHHHHHhhCC-CCC
Q 007519 231 NNCNVQSCNSMINGYIRFG----RLEEAQNLFDTVP---VRDEISWTSMIDGYLSVGQ------VSNAYYLFHNMP-DRD 296 (600)
Q Consensus 231 ~~~~~~~~~~l~~~~~~~~----~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~------~~~A~~~~~~~~-~~~ 296 (600)
.+.+..|...|...|...+ ..+.|..++.... +.|...|-.+...+....- +..|..++.... ...
T Consensus 372 ~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip 451 (1018)
T KOG2002|consen 372 LPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQIP 451 (1018)
T ss_pred CcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCC
Confidence 2334567777777777764 5677888887776 4456667776666654433 333343333222 256
Q ss_pred hhhHHHHHHHHHhCCChhHHHHHHHHHHHC---CCCCChh------HHHHHHHHHhcccchhhhHHHHHHHhhhcCCCch
Q 007519 297 AVAWTAMISGLVQNELFVEATYLFMEMRAH---GVPPLNA------TFSVLFGAAGATANIDLGRQIHCVLMKTESESDL 367 (600)
Q Consensus 297 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---g~~p~~~------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 367 (600)
+...|.+...+...|++..|...|+..... ...+|.. +--.+....-..++.+.|.+.|..+.+..+. =+
T Consensus 452 ~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~-YI 530 (1018)
T KOG2002|consen 452 PEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPG-YI 530 (1018)
T ss_pred HHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCch-hH
Confidence 678899999999999999999999988765 2233332 2333445556778999999999988876431 12
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhcCC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHc-CCCCChhHHHHHHHHh
Q 007519 368 ILENCLISMYAKCGVIDNAYNIFSNMV---SRDLVSWNSMVMGFSHHGLANETLKVFESMLES-GTHPNSVTFLGILSAC 443 (600)
Q Consensus 368 ~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-~~~p~~~~~~~l~~~~ 443 (600)
..|-.+.......+...+|...++... ..++..|+.+...+.....+..|.+-|....+. ...+|..+...|...|
T Consensus 531 d~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~ 610 (1018)
T KOG2002|consen 531 DAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVY 610 (1018)
T ss_pred HHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHH
Confidence 223333322333467788988888876 567788888888999988888888877766654 2235666665665544
Q ss_pred cc------------cCchHHHHHHHHHHHhhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHhCC--CCCCHHHHHHHH
Q 007519 444 SH------------AGLVSRGWELFNAMFDVYKIQP-GPEHYVSMINLLGRAGKIKEAEEFVLRLP--FEPDHRIWGALL 508 (600)
Q Consensus 444 ~~------------~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~ 508 (600)
.+ .+..++|+++|.++.+ ..| +...-+-++-+++..|++.+|..+|.+.. ......+|.++.
T Consensus 611 ~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~---~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNla 687 (1018)
T KOG2002|consen 611 IQALHNPSRNPEKEKKHQEKALQLYGKVLR---NDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLA 687 (1018)
T ss_pred HHHhcccccChHHHHHHHHHHHHHHHHHHh---cCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHH
Confidence 32 2456788888888875 356 78888889999999999999999998875 333556888999
Q ss_pred HHHhhhhCCHHHHHHHHHHHHhh--CCCCCCcHHHHhHHHHhhCCcHHHHH-HHHHHh
Q 007519 509 GACGFCEGNAEIAEHAAKRLLEL--DPLNAPAHVVLCNIYAASGRHVEEHK-LRMDMG 563 (600)
Q Consensus 509 ~~~~~~~g~~~~a~~~~~~~~~~--~p~~~~~~~~l~~~~~~~g~~~~A~~-~~~~~~ 563 (600)
.+|. ..|++..|+++|+...+. .-+++.+...|+.++.+.|.+.+|.+ +...+.
T Consensus 688 h~~~-e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~ 744 (1018)
T KOG2002|consen 688 HCYV-EQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARH 744 (1018)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 9999 999999999999999883 23467889999999999999999999 444443
No 18
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.86 E-value=1.7e-18 Score=179.03 Aligned_cols=326 Identities=10% Similarity=0.017 Sum_probs=224.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHhcCChhhHHHHhcccC---CCCchhHHHHHHHH
Q 007519 200 WTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVP---VRDEISWTSMIDGY 276 (600)
Q Consensus 200 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~ 276 (600)
...++..+.+.|+++.|+.+++..... .+-+...+..++.+....|++++|...++.+. +.++..+..+...+
T Consensus 45 ~~~~~~~~~~~g~~~~A~~l~~~~l~~----~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l 120 (656)
T PRK15174 45 IILFAIACLRKDETDVGLTLLSDRVLT----AKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVL 120 (656)
T ss_pred HHHHHHHHHhcCCcchhHHHhHHHHHh----CCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 344555666667777777776666653 12223344445555556677777777766665 44455666666667
Q ss_pred HhcCChHHHHHHHhhCCC---CChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhcccchhhhHH
Q 007519 277 LSVGQVSNAYYLFHNMPD---RDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQ 353 (600)
Q Consensus 277 ~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~ 353 (600)
...|++++|+..|++... .+...+..+...+...|++++|...++.+.... |+.......+..+...|++++|..
T Consensus 121 ~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~--P~~~~a~~~~~~l~~~g~~~eA~~ 198 (656)
T PRK15174 121 LKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEV--PPRGDMIATCLSFLNKSRLPEDHD 198 (656)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHcCCHHHHHH
Confidence 777777777777766544 244566667777777777777777777766542 322222222234566777777777
Q ss_pred HHHHHhhhcCCCchhHHHHHHHHHHhcCChHHHHHHHhcCC---CCChhhHHHHHHHHHhcCChHH----HHHHHHHHHH
Q 007519 354 IHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMV---SRDLVSWNSMVMGFSHHGLANE----TLKVFESMLE 426 (600)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~----a~~~~~~m~~ 426 (600)
.++.+.+....++......+..++...|++++|...+++.. +.+...+..+...+...|++++ |+..|++...
T Consensus 199 ~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~ 278 (656)
T PRK15174 199 LARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ 278 (656)
T ss_pred HHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh
Confidence 77766655433344444455667778888888888888765 4456777788888888898885 7888998887
Q ss_pred cCCCCChhHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHhCC-CCCCHHHH
Q 007519 427 SGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQP-GPEHYVSMINLLGRAGKIKEAEEFVLRLP-FEPDHRIW 504 (600)
Q Consensus 427 ~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~ 504 (600)
.. +.+...+..+...+...|++++|...++++.+. .| +...+..++.+|.+.|++++|.+.++++. ..|+...+
T Consensus 279 l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l---~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~ 354 (656)
T PRK15174 279 FN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT---HPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKW 354 (656)
T ss_pred hC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHH
Confidence 42 334567777888889999999999999998864 56 46677788899999999999999998875 56665444
Q ss_pred HH-HHHHHhhhhCCHHHHHHHHHHHHhhCCCCC
Q 007519 505 GA-LLGACGFCEGNAEIAEHAAKRLLELDPLNA 536 (600)
Q Consensus 505 ~~-l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 536 (600)
.. +..++. ..|+.++|+..++++++..|++.
T Consensus 355 ~~~~a~al~-~~G~~deA~~~l~~al~~~P~~~ 386 (656)
T PRK15174 355 NRYAAAALL-QAGKTSEAESVFEHYIQARASHL 386 (656)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHhChhhc
Confidence 33 344566 88999999999999999988654
No 19
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.86 E-value=2.4e-19 Score=177.09 Aligned_cols=267 Identities=13% Similarity=0.051 Sum_probs=172.1
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC---hhHHHHHHHHHhcccchhhhHHHHHHHhhhcCCCchhHHHHHHH
Q 007519 299 AWTAMISGLVQNELFVEATYLFMEMRAHGVPPL---NATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLIS 375 (600)
Q Consensus 299 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 375 (600)
++..+...+...|++++|+.+++.+...+..++ ...+..+...+...|+++.|..++..+.+.. +.+..++..++.
T Consensus 71 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~ 149 (389)
T PRK11788 71 LHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEG-DFAEGALQQLLE 149 (389)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCC-cchHHHHHHHHH
Confidence 344444444444444444444444443221111 1223334444444444444444444444321 123444555555
Q ss_pred HHHhcCChHHHHHHHhcCCC--CC------hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccC
Q 007519 376 MYAKCGVIDNAYNIFSNMVS--RD------LVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAG 447 (600)
Q Consensus 376 ~~~~~~~~~~A~~~~~~~~~--~~------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g 447 (600)
.+.+.|++++|.+.++.+.. |+ ...+..+...+...|++++|...|+++.+.. +.+...+..+...+.+.|
T Consensus 150 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g 228 (389)
T PRK11788 150 IYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQG 228 (389)
T ss_pred HHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCC
Confidence 56666666666666655541 11 1134456667778888888888888887642 333456667778888889
Q ss_pred chHHHHHHHHHHHhhcCCCCC--cchHHHHHHHHhhcCChHHHHHHHHhCC-CCCCHHHHHHHHHHHhhhhCCHHHHHHH
Q 007519 448 LVSRGWELFNAMFDVYKIQPG--PEHYVSMINLLGRAGKIKEAEEFVLRLP-FEPDHRIWGALLGACGFCEGNAEIAEHA 524 (600)
Q Consensus 448 ~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l~~~~~~~~g~~~~a~~~ 524 (600)
++++|.++++++.+. .|+ ..++..++.+|...|++++|.+.++++. ..|+...+..+...+. ..|++++|+..
T Consensus 229 ~~~~A~~~~~~~~~~---~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~-~~g~~~~A~~~ 304 (389)
T PRK11788 229 DYAAAIEALERVEEQ---DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLE-EQEGPEAAQAL 304 (389)
T ss_pred CHHHHHHHHHHHHHH---ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHH-HhCCHHHHHHH
Confidence 999999998888764 343 4567788889999999999999988864 5677767777777777 88999999999
Q ss_pred HHHHHhhCCCCCCcHHHHhHHHHh---hCCcHHHHHHHHHHhhcCCccCCC
Q 007519 525 AKRLLELDPLNAPAHVVLCNIYAA---SGRHVEEHKLRMDMGLKGVRKVPG 572 (600)
Q Consensus 525 ~~~~~~~~p~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~ 572 (600)
++++++..|+++ .+..+...+.. .|+.+++..+++.+.++++++.|.
T Consensus 305 l~~~l~~~P~~~-~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 305 LREQLRRHPSLR-GFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred HHHHHHhCcCHH-HHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 999999999544 55555555443 568899999999999999988886
No 20
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.85 E-value=1.2e-18 Score=172.17 Aligned_cols=287 Identities=17% Similarity=0.157 Sum_probs=194.5
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhhhcCCCCC-ChhhHHHHHHHHHhcCChhhHHHHhcccCCCC-------chhHHHHHH
Q 007519 203 MIGGFAWNGFHKESLLLFIEMKGICDNGNNC-NVQSCNSMINGYIRFGRLEEAQNLFDTVPVRD-------EISWTSMID 274 (600)
Q Consensus 203 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~~l~~ 274 (600)
....+...|++++|+..|+++.+. .| +..++..+...+...|++++|..+++.+.... ...+..++.
T Consensus 41 ~g~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~ 115 (389)
T PRK11788 41 KGLNFLLNEQPDKAIDLFIEMLKV-----DPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQ 115 (389)
T ss_pred HHHHHHhcCChHHHHHHHHHHHhc-----CcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Confidence 344556677788888888888754 33 34566677777777777777777776655211 123344444
Q ss_pred HHHhcCChHHHHHHHhhCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhcccchhhhHHH
Q 007519 275 GYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQI 354 (600)
Q Consensus 275 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~ 354 (600)
.|...|++++|..+| +++.+.. +++..++..+...+...|++++|...
T Consensus 116 ~~~~~g~~~~A~~~~-------------------------------~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~ 163 (389)
T PRK11788 116 DYLKAGLLDRAEELF-------------------------------LQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDV 163 (389)
T ss_pred HHHHCCCHHHHHHHH-------------------------------HHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHH
Confidence 444445555555444 4444321 22333444444444444444444444
Q ss_pred HHHHhhhcCCCc----hhHHHHHHHHHHhcCChHHHHHHHhcCC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 007519 355 HCVLMKTESESD----LILENCLISMYAKCGVIDNAYNIFSNMV---SRDLVSWNSMVMGFSHHGLANETLKVFESMLES 427 (600)
Q Consensus 355 ~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 427 (600)
++.+.+.+..+. ...+..+...+.+.|++++|...|+++. +.+...+..+...+.+.|++++|.++|+++.+.
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 243 (389)
T PRK11788 164 AERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQ 243 (389)
T ss_pred HHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 444444332221 1234456677788888888888888875 334567778889999999999999999999875
Q ss_pred CCCCChhHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhCC-CCCCHHHHHH
Q 007519 428 GTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLP-FEPDHRIWGA 506 (600)
Q Consensus 428 ~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~ 506 (600)
+......++..+..+|...|++++|.+.++++.+. .|+...+..++..+.+.|++++|.++++++. ..|+...++.
T Consensus 244 ~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~---~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~ 320 (389)
T PRK11788 244 DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE---YPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHR 320 (389)
T ss_pred ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHH
Confidence 32222456778889999999999999999998864 6776777899999999999999999998764 6799888887
Q ss_pred HHHHHhhh---hCCHHHHHHHHHHHHh
Q 007519 507 LLGACGFC---EGNAEIAEHAAKRLLE 530 (600)
Q Consensus 507 l~~~~~~~---~g~~~~a~~~~~~~~~ 530 (600)
++..+. . .|+..+++..++++++
T Consensus 321 l~~~~~-~~~~~g~~~~a~~~~~~~~~ 346 (389)
T PRK11788 321 LLDYHL-AEAEEGRAKESLLLLRDLVG 346 (389)
T ss_pred HHHHhh-hccCCccchhHHHHHHHHHH
Confidence 777654 3 4588888888888876
No 21
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.85 E-value=1e-17 Score=174.16 Aligned_cols=411 Identities=11% Similarity=-0.002 Sum_probs=259.3
Q ss_pred HHHHHHHHHHCCChhHHHHHhhcCCC--CCcccHHHHHHHHHhcCCHhHHHHHHHhccc--C-CchhHHHHHHHHHhcCC
Q 007519 107 WNSMVVGLIRNGELNEARKVFNSMPI--KNVISWNAMIAGYVECCMMGEAIVLFEEMEE--R-NVVTWTSMISGYCRAGE 181 (600)
Q Consensus 107 ~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~g~ 181 (600)
+......+.+.|+++.|++.|++... |++..|..+..+|.+.|++++|+..++...+ | +..++..+..+|...|+
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~ 209 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGK 209 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC
Confidence 33455666667777777777776654 5556666666777777777777777776663 2 33456666677777777
Q ss_pred hhHHHHHHccCCCCC---cchHHHHHHHHHhcCChhHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHhcCChhhHHHHh
Q 007519 182 VEEGYCLFRRMPRKN---VVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLF 258 (600)
Q Consensus 182 ~~~A~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 258 (600)
+++|+..|......+ ......++..+.. ..+........+. .+++...+..+.. +...........-+
T Consensus 210 ~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~a~~~~~~~l~~----~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 280 (615)
T TIGR00990 210 YADALLDLTASCIIDGFRNEQSAQAVERLLK----KFAESKAKEILET----KPENLPSVTFVGN-YLQSFRPKPRPAGL 280 (615)
T ss_pred HHHHHHHHHHHHHhCCCccHHHHHHHHHHHH----HHHHHHHHHHHhc----CCCCCCCHHHHHH-HHHHccCCcchhhh
Confidence 777776654432111 1111111111111 1222222222221 1122222222222 22111111111111
Q ss_pred cccCCCCc---hhHHHHHHHH---HhcCChHHHHHHHhhCCC------CChhhHHHHHHHHHhCCChhHHHHHHHHHHHC
Q 007519 259 DTVPVRDE---ISWTSMIDGY---LSVGQVSNAYYLFHNMPD------RDAVAWTAMISGLVQNELFVEATYLFMEMRAH 326 (600)
Q Consensus 259 ~~~~~~~~---~~~~~l~~~~---~~~~~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 326 (600)
......+. ..+..+...+ ...+++++|...|+...+ .....|+.+...+...|++++|+..|++..+.
T Consensus 281 ~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l 360 (615)
T TIGR00990 281 EDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL 360 (615)
T ss_pred hcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 11111111 1111111111 234678888888877653 23456777778888889999999999888875
Q ss_pred CCCCC-hhHHHHHHHHHhcccchhhhHHHHHHHhhhcCCCchhHHHHHHHHHHhcCChHHHHHHHhcCC---CCChhhHH
Q 007519 327 GVPPL-NATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMV---SRDLVSWN 402 (600)
Q Consensus 327 g~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~ 402 (600)
.|+ ...+..+...+...|+++.|...++.+.+... .+..++..+...+...|++++|...|++.. +.+...+.
T Consensus 361 --~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~ 437 (615)
T TIGR00990 361 --DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNS-EDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHI 437 (615)
T ss_pred --CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHH
Confidence 454 44677777788888899999998888776643 356778888889999999999999998876 44567777
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCCC-cch-------HHH
Q 007519 403 SMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPG-PEH-------YVS 474 (600)
Q Consensus 403 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~-------~~~ 474 (600)
.+..++.+.|++++|+..|++.... .+.+...+..+...+...|++++|.+.|+++.+. .|+ ... ++.
T Consensus 438 ~la~~~~~~g~~~eA~~~~~~al~~-~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l---~p~~~~~~~~~~~l~~~ 513 (615)
T TIGR00990 438 QLGVTQYKEGSIASSMATFRRCKKN-FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL---EKETKPMYMNVLPLINK 513 (615)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc---CCccccccccHHHHHHH
Confidence 8888899999999999999998874 2344577788888899999999999999998754 342 111 111
Q ss_pred HHHHHhhcCChHHHHHHHHhC-CCCCCHH-HHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCC
Q 007519 475 MINLLGRAGKIKEAEEFVLRL-PFEPDHR-IWGALLGACGFCEGNAEIAEHAAKRLLELDPL 534 (600)
Q Consensus 475 l~~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~ 534 (600)
....+...|++++|.+++++. ...|+.. .+..+...+. ..|++++|+..++++.++.+.
T Consensus 514 a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~-~~g~~~eAi~~~e~A~~l~~~ 574 (615)
T TIGR00990 514 ALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLL-QQGDVDEALKLFERAAELART 574 (615)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH-HccCHHHHHHHHHHHHHHhcc
Confidence 222344579999999999885 4566544 5677777777 999999999999999998774
No 22
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.85 E-value=3.2e-17 Score=173.49 Aligned_cols=393 Identities=12% Similarity=0.043 Sum_probs=213.8
Q ss_pred HHHHHHHCCChhHHHHHhhcCCC---CCcccHHHHHHHHHhcCCHhHHHHHHHhccc--C-CchhHHHHHHHHHhcCChh
Q 007519 110 MVVGLIRNGELNEARKVFNSMPI---KNVISWNAMIAGYVECCMMGEAIVLFEEMEE--R-NVVTWTSMISGYCRAGEVE 183 (600)
Q Consensus 110 l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~ 183 (600)
.+......|+.++|++++.+... .+...+..+..++...|++++|.+++++..+ | +...+..++..+...|+++
T Consensus 21 ~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~ 100 (765)
T PRK10049 21 WLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYD 100 (765)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHH
Confidence 34444555555555555555443 1222344555555555555555555555432 2 2333444445555555555
Q ss_pred HHHHHHccCCC--C-CcchHHHHHHHHHhcCChhHHHHHHHHHHhhhcCCCCCC-hhhHHHHHHHHHhcCChhhHHHHhc
Q 007519 184 EGYCLFRRMPR--K-NVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCN-VQSCNSMINGYIRFGRLEEAQNLFD 259 (600)
Q Consensus 184 ~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~ 259 (600)
+|...+++..+ | +.. +..+...+...|+.++|+..++++.+. .|+ ...+..+..++...+..+.|...++
T Consensus 101 eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~-----~P~~~~~~~~la~~l~~~~~~e~Al~~l~ 174 (765)
T PRK10049 101 EALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPR-----APQTQQYPTEYVQALRNNRLSAPALGAID 174 (765)
T ss_pred HHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHCCChHHHHHHHH
Confidence 55555555432 1 222 444445555555555555555555543 332 2233334444444455555555444
Q ss_pred ccCCCCchhHHHHHHHHHhcCChHHHHHHHhhCCCCChhhHHHHHHHH-----HhCCCh---hHHHHHHHHHHHC-CCCC
Q 007519 260 TVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGL-----VQNELF---VEATYLFMEMRAH-GVPP 330 (600)
Q Consensus 260 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~-----~~~g~~---~~a~~~~~~m~~~-g~~p 330 (600)
.+.. ++.....+ .......++... ...+++ ++|+..++.+.+. ...|
T Consensus 175 ~~~~-~p~~~~~l-----------------------~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p 230 (765)
T PRK10049 175 DANL-TPAEKRDL-----------------------EADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNP 230 (765)
T ss_pred hCCC-CHHHHHHH-----------------------HHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCC
Confidence 4432 11100000 000111111111 111223 6677777777653 1223
Q ss_pred Chh-HHH----HHHHHHhcccchhhhHHHHHHHhhhcCC-CchhHHHHHHHHHHhcCChHHHHHHHhcCCC--CC-----
Q 007519 331 LNA-TFS----VLFGAAGATANIDLGRQIHCVLMKTESE-SDLILENCLISMYAKCGVIDNAYNIFSNMVS--RD----- 397 (600)
Q Consensus 331 ~~~-~~~----~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~----- 397 (600)
+.. .+. ..+.++...++.+.|...|+.+.+.+.+ |+. ....+..+|...|++++|+..|+++.. |.
T Consensus 231 ~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~ 309 (765)
T PRK10049 231 DATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLS 309 (765)
T ss_pred ccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCC
Confidence 221 111 1123344557777777777777666532 221 122246677788888888888877652 21
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHHcC-----------CCCCh---hHHHHHHHHhcccCchHHHHHHHHHHHhhc
Q 007519 398 LVSWNSMVMGFSHHGLANETLKVFESMLESG-----------THPNS---VTFLGILSACSHAGLVSRGWELFNAMFDVY 463 (600)
Q Consensus 398 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-----------~~p~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 463 (600)
......+..++...|++++|..+++.+.... -.|+. ..+..+...+...|++++|.+.++++...
T Consensus 310 ~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~- 388 (765)
T PRK10049 310 DEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN- 388 (765)
T ss_pred hHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-
Confidence 2334556667788888888888888887642 01221 13344556677788888888888888754
Q ss_pred CCCC-CcchHHHHHHHHhhcCChHHHHHHHHhCC-CCCCHH-HHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCCC
Q 007519 464 KIQP-GPEHYVSMINLLGRAGKIKEAEEFVLRLP-FEPDHR-IWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAP 537 (600)
Q Consensus 464 ~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~-~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 537 (600)
.| +...+..++.++...|++++|++.+++.. ..|+.. .+......+. ..|++++|+..++++++..|+++.
T Consensus 389 --~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al-~~~~~~~A~~~~~~ll~~~Pd~~~ 462 (765)
T PRK10049 389 --APGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTAL-DLQEWRQMDVLTDDVVAREPQDPG 462 (765)
T ss_pred --CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHH-HhCCHHHHHHHHHHHHHhCCCCHH
Confidence 45 56777888888888888888888888764 566643 3344444455 778888888888888888886663
No 23
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.84 E-value=6e-17 Score=167.81 Aligned_cols=432 Identities=12% Similarity=0.038 Sum_probs=297.1
Q ss_pred HHHHHhcCChHHHHHHhhcCCC--CCce-eHHHHHHHHHHCCChhHHHHHhhcCCCCCcccHHHH---HHHHHhcCCHhH
Q 007519 80 ICGLADAGRVCEARKLFEEMPE--RNVV-SWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAM---IAGYVECCMMGE 153 (600)
Q Consensus 80 ~~~~~~~g~~~~A~~~~~~~~~--~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l---~~~~~~~~~~~~ 153 (600)
+-...++|+++.|++.|++..+ |+.. ....++..+...|+.++|+..+++...|+...+..+ ...+...|++++
T Consensus 41 aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~ 120 (822)
T PRK14574 41 LIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQ 120 (822)
T ss_pred HHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHH
Confidence 3345699999999999999987 4321 233888888899999999999999987655444433 456778899999
Q ss_pred HHHHHHhccc--C-CchhHHHHHHHHHhcCChhHHHHHHccCCCCCc--chHHHHHHHHHhcCChhHHHHHHHHHHhhhc
Q 007519 154 AIVLFEEMEE--R-NVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNV--VSWTAMIGGFAWNGFHKESLLLFIEMKGICD 228 (600)
Q Consensus 154 A~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 228 (600)
|.++|+++.+ | ++..+..++..+...++.++|++.++++...++ ..+..++..+...++..+|++.++++.+.
T Consensus 121 Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~-- 198 (822)
T PRK14574 121 ALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAVRL-- 198 (822)
T ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHHh--
Confidence 9999999884 3 456667778889999999999999999986444 34433333333455665699999999975
Q ss_pred CCCCC-ChhhHHHHHHHHHhcCChhhHHHHhcccCCC-CchhHHHHHHHHHhcCChHHHHHHHhhCCCCChhhHHHHHHH
Q 007519 229 NGNNC-NVQSCNSMINGYIRFGRLEEAQNLFDTVPVR-DEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISG 306 (600)
Q Consensus 229 ~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~ 306 (600)
.| +...+..+..++.+.|-...|.++...-... +...+.-+ +.+.|.+..+....++.
T Consensus 199 ---~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l--------~~~~~a~~vr~a~~~~~--------- 258 (822)
T PRK14574 199 ---APTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQL--------ERDAAAEQVRMAVLPTR--------- 258 (822)
T ss_pred ---CCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHH--------HHHHHHHHHhhcccccc---------
Confidence 55 4666777888888999888888887764411 11111110 01111111111110000
Q ss_pred HHhCCC---hhHHHHHHHHHHHC-CCCCCh-hHH-H---HHHHHHhcccchhhhHHHHHHHhhhcCCCchhHHHHHHHHH
Q 007519 307 LVQNEL---FVEATYLFMEMRAH-GVPPLN-ATF-S---VLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMY 377 (600)
Q Consensus 307 ~~~~g~---~~~a~~~~~~m~~~-g~~p~~-~~~-~---~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 377 (600)
...++ .+.|+.-++.+... +-.|.. ..| . -.+-++...++...+...++.+...+.+....+-.++.++|
T Consensus 259 -~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~aday 337 (822)
T PRK14574 259 -SETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAY 337 (822)
T ss_pred -cchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHH
Confidence 00111 24455555554442 111322 111 1 22335566777777777777777777666666777888888
Q ss_pred HhcCChHHHHHHHhcCCCC---------ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCC-----------CCCh--h-
Q 007519 378 AKCGVIDNAYNIFSNMVSR---------DLVSWNSMVMGFSHHGLANETLKVFESMLESGT-----------HPNS--V- 434 (600)
Q Consensus 378 ~~~~~~~~A~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-----------~p~~--~- 434 (600)
...+.+++|+.+|+.+..+ +......|..++...+++++|..+++.+.+.-. .||+ .
T Consensus 338 l~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~ 417 (822)
T PRK14574 338 IDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIE 417 (822)
T ss_pred HhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHH
Confidence 8888888888888877421 223346778888899999999999999887311 1222 2
Q ss_pred HHHHHHHHhcccCchHHHHHHHHHHHhhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHhCC-CCCCHH-HHHHHHHHH
Q 007519 435 TFLGILSACSHAGLVSRGWELFNAMFDVYKIQP-GPEHYVSMINLLGRAGKIKEAEEFVLRLP-FEPDHR-IWGALLGAC 511 (600)
Q Consensus 435 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~-~~~~l~~~~ 511 (600)
.+..++..+...|++.+|++.++++... .| |......++..+...|.+.+|++.++... ..|+.. +....+.+.
T Consensus 418 ~~~l~a~~~~~~gdl~~Ae~~le~l~~~---aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~a 494 (822)
T PRK14574 418 GQTLLVQSLVALNDLPTAQKKLEDLSST---APANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETA 494 (822)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHH
Confidence 2334567788999999999999999753 67 78899999999999999999999998865 667654 455555666
Q ss_pred hhhhCCHHHHHHHHHHHHhhCCCCCCc
Q 007519 512 GFCEGNAEIAEHAAKRLLELDPLNAPA 538 (600)
Q Consensus 512 ~~~~g~~~~a~~~~~~~~~~~p~~~~~ 538 (600)
. ..|++.+|......+.+..|+++.+
T Consensus 495 l-~l~e~~~A~~~~~~l~~~~Pe~~~~ 520 (822)
T PRK14574 495 M-ALQEWHQMELLTDDVISRSPEDIPS 520 (822)
T ss_pred H-hhhhHHHHHHHHHHHHhhCCCchhH
Confidence 6 8999999999999999999977743
No 24
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.84 E-value=9.5e-18 Score=173.59 Aligned_cols=350 Identities=10% Similarity=-0.012 Sum_probs=272.3
Q ss_pred HhcCChhHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHhcCChhhHHHHhcccC---CCCchhHHHHHHHHHhcCChHH
Q 007519 208 AWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVP---VRDEISWTSMIDGYLSVGQVSN 284 (600)
Q Consensus 208 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~ 284 (600)
.++.+|+.-.-+|...-+. ...-..+..-...++..+.+.|++++|..+++... +.+......++.+....|++++
T Consensus 16 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~ 94 (656)
T PRK15174 16 LKQEDWEGLCLYFSQHPEK-VRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDA 94 (656)
T ss_pred hhhhchhhHhHHhhcccHh-hhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHH
Confidence 3455555554444443322 00112233345566778889999999999999886 5566677778888888999999
Q ss_pred HHHHHhhCCC---CChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC-hhHHHHHHHHHhcccchhhhHHHHHHHhh
Q 007519 285 AYYLFHNMPD---RDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPL-NATFSVLFGAAGATANIDLGRQIHCVLMK 360 (600)
Q Consensus 285 A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 360 (600)
|...|+++.. .+...+..+...+...|++++|+..++++.+. .|+ ...+..+..++...|+.+.|...+..+..
T Consensus 95 A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l--~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~ 172 (656)
T PRK15174 95 VLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLA--FSGNSQIFALHLRTLVLMDKELQAISLARTQAQ 172 (656)
T ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence 9999999865 35567888899999999999999999999885 454 55677788899999999999999997776
Q ss_pred hcCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCC----ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHH
Q 007519 361 TESESDLILENCLISMYAKCGVIDNAYNIFSNMVSR----DLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTF 436 (600)
Q Consensus 361 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~ 436 (600)
....+... +..+ ..+...|++++|...++.+... +...+..+..++...|++++|+..++++.... +.+...+
T Consensus 173 ~~P~~~~a-~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~ 249 (656)
T PRK15174 173 EVPPRGDM-IATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALR 249 (656)
T ss_pred hCCCCHHH-HHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHH
Confidence 65544333 3333 3478899999999999987632 33344556678899999999999999999753 3445667
Q ss_pred HHHHHHhcccCchHH----HHHHHHHHHhhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHhCC-CCCCH-HHHHHHHH
Q 007519 437 LGILSACSHAGLVSR----GWELFNAMFDVYKIQP-GPEHYVSMINLLGRAGKIKEAEEFVLRLP-FEPDH-RIWGALLG 509 (600)
Q Consensus 437 ~~l~~~~~~~g~~~~----a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~-~~~~~l~~ 509 (600)
..+...+...|++++ |...++++.+. .| +...+..++..+.+.|++++|...+++.. ..|+. ..+..+..
T Consensus 250 ~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l---~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~ 326 (656)
T PRK15174 250 RSLGLAYYQSGRSREAKLQAAEHWRHALQF---NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYAR 326 (656)
T ss_pred HHHHHHHHHcCCchhhHHHHHHHHHHHHhh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 778888999999986 89999999864 66 57789999999999999999999998875 56654 45666666
Q ss_pred HHhhhhCCHHHHHHHHHHHHhhCCCCCCcHHHHhHHHHhhCCcHHHHHHHHHHhhcCC
Q 007519 510 ACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGV 567 (600)
Q Consensus 510 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 567 (600)
.+. ..|++++|+..++++.+..|+++..+..++.++...|++++|...++...+...
T Consensus 327 ~l~-~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P 383 (656)
T PRK15174 327 ALR-QVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARA 383 (656)
T ss_pred HHH-HCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCh
Confidence 777 999999999999999999997777677788899999999999998777655443
No 25
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.83 E-value=9.7e-17 Score=169.85 Aligned_cols=381 Identities=10% Similarity=0.027 Sum_probs=227.8
Q ss_pred HHHHhcCChhHHHHHHccCCC---CCcchHHHHHHHHHhcCChhHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHhcCC
Q 007519 174 SGYCRAGEVEEGYCLFRRMPR---KNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGR 250 (600)
Q Consensus 174 ~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 250 (600)
......|+.++|++++.+... .+...+..+...+...|++++|..++++..+. .+.+...+..+...+...|+
T Consensus 23 ~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~----~P~~~~a~~~la~~l~~~g~ 98 (765)
T PRK10049 23 QIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSL----EPQNDDYQRGLILTLADAGQ 98 (765)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHCCC
Confidence 334444444444444444432 11122444444444445555555555444432 11122333344444444455
Q ss_pred hhhHHHHhcccC---CCCchhHHHHHHHHHhcCChHHHHHHHhhCCC--C-ChhhHHHHHHHHHhCCChhHHHHHHHHHH
Q 007519 251 LEEAQNLFDTVP---VRDEISWTSMIDGYLSVGQVSNAYYLFHNMPD--R-DAVAWTAMISGLVQNELFVEATYLFMEMR 324 (600)
Q Consensus 251 ~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 324 (600)
+++|...++++. +.+.. +..+..++...|+.++|+..++++.. | +...+..+...+...|..+.|+..++...
T Consensus 99 ~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~ 177 (765)
T PRK10049 99 YDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDAN 177 (765)
T ss_pred HHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCC
Confidence 555554444443 22233 44444444455555555555544433 2 22333444445555555555555554433
Q ss_pred HCCCCCCh------hHHHHHHHHH-----hcccch---hhhHHHHHHHhhh-cCCCchh-HH-HH---HHHHHHhcCChH
Q 007519 325 AHGVPPLN------ATFSVLFGAA-----GATANI---DLGRQIHCVLMKT-ESESDLI-LE-NC---LISMYAKCGVID 384 (600)
Q Consensus 325 ~~g~~p~~------~~~~~l~~~~-----~~~~~~---~~a~~~~~~~~~~-~~~~~~~-~~-~~---l~~~~~~~~~~~ 384 (600)
. .|+. .....++... ...+.+ +.|...++.+.+. ...|+.. .+ .. .+.++...|+++
T Consensus 178 ~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~ 254 (765)
T PRK10049 178 L---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYK 254 (765)
T ss_pred C---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHH
Confidence 2 1221 0011111111 111223 5677777766654 2233221 11 11 123446779999
Q ss_pred HHHHHHhcCCCCC---hh-hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-----hhHHHHHHHHhcccCchHHHHHH
Q 007519 385 NAYNIFSNMVSRD---LV-SWNSMVMGFSHHGLANETLKVFESMLESGTHPN-----SVTFLGILSACSHAGLVSRGWEL 455 (600)
Q Consensus 385 ~A~~~~~~~~~~~---~~-~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-----~~~~~~l~~~~~~~g~~~~a~~~ 455 (600)
+|+..|+.+...+ +. .-..+..++...|++++|+.+|+++... .|. ......+..++...|++++|.++
T Consensus 255 eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~--~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~ 332 (765)
T PRK10049 255 DVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYH--PETIADLSDEELADLFYSLLESENYPGALTV 332 (765)
T ss_pred HHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhc--CCCCCCCChHHHHHHHHHHHhcccHHHHHHH
Confidence 9999999987322 11 2222577899999999999999998764 332 23455666778999999999999
Q ss_pred HHHHHhhcC----------CCCC---cchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHhhhhCCHHH
Q 007519 456 FNAMFDVYK----------IQPG---PEHYVSMINLLGRAGKIKEAEEFVLRLP-FEP-DHRIWGALLGACGFCEGNAEI 520 (600)
Q Consensus 456 ~~~~~~~~~----------~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~g~~~~ 520 (600)
++.+..... -.|+ ...+..++.++...|+.++|++.++++. ..| +...+..+...+. ..|+.++
T Consensus 333 l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~-~~g~~~~ 411 (765)
T PRK10049 333 TAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQ-ARGWPRA 411 (765)
T ss_pred HHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-hcCCHHH
Confidence 999986421 1122 2245677889999999999999999975 445 4566777777777 9999999
Q ss_pred HHHHHHHHHhhCCCCCCcHHHHhHHHHhhCCcHHHHHHHHHHhhc
Q 007519 521 AEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLK 565 (600)
Q Consensus 521 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 565 (600)
|+..++++++++|+++..+..++.++...|++++|..+++.+.+.
T Consensus 412 A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 412 AENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred HHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999988777654
No 26
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.81 E-value=1.2e-17 Score=151.21 Aligned_cols=205 Identities=12% Similarity=0.113 Sum_probs=166.9
Q ss_pred hcccchhhhHHHHHHHhhhcCCCchhHHHHHHHHHHhcCChHHHHHHHhcCC---CCChhhHHHHHHHHHhcCChHHHHH
Q 007519 343 GATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMV---SRDLVSWNSMVMGFSHHGLANETLK 419 (600)
Q Consensus 343 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~ 419 (600)
...|++++|...+++.....-......|| +.-.+...|++++|++.|-++. ..+..+...+...|-...+..+|++
T Consensus 501 f~ngd~dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie 579 (840)
T KOG2003|consen 501 FANGDLDKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIE 579 (840)
T ss_pred eecCcHHHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHH
Confidence 34566666766666666554333333443 3334667899999999987765 6677888888899999999999999
Q ss_pred HHHHHHHcCCCCChhHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHhCC-C
Q 007519 420 VFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQP-GPEHYVSMINLLGRAGKIKEAEEFVLRLP-F 497 (600)
Q Consensus 420 ~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~ 497 (600)
++.+.... ++.++..+.-|...|-+.|+-..|.+++-.-- ..-| +..+...|...|....-+++|..+|++.. +
T Consensus 580 ~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsy---ryfp~nie~iewl~ayyidtqf~ekai~y~ekaali 655 (840)
T KOG2003|consen 580 LLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSY---RYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALI 655 (840)
T ss_pred HHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcc---cccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhc
Confidence 99888764 55567788888999999999999988765443 3445 78999999999999999999999999975 8
Q ss_pred CCCHHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCCCcHHHHhHHHHhhCCc
Q 007519 498 EPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRH 552 (600)
Q Consensus 498 ~p~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 552 (600)
.|+..-|..++.+|..+.|++..|+.+|+......|.+...+.-|.+.+...|..
T Consensus 656 qp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl~ 710 (840)
T KOG2003|consen 656 QPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGLK 710 (840)
T ss_pred CccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccch
Confidence 9999999999999877899999999999999999999999999999999888753
No 27
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.80 E-value=1.8e-15 Score=156.97 Aligned_cols=430 Identities=12% Similarity=0.048 Sum_probs=296.8
Q ss_pred HHHHHHHHHcCCChhHHHHHhhhcCC--CChh-hHHHHHHHHHhcCChHHHHHHhhcCCCCCcee-HHHH--HHHHHHCC
Q 007519 45 YNAMLSGFLQNGRLSEARRLFEEMPE--RNVV-SWTAMICGLADAGRVCEARKLFEEMPERNVVS-WNSM--VVGLIRNG 118 (600)
Q Consensus 45 ~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~l--~~~~~~~~ 118 (600)
|...+. ..+.|++..|+..|++..+ |+.. ....++..+...|+.++|+..+++...|+... +..+ +..+...|
T Consensus 38 y~~aii-~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~g 116 (822)
T PRK14574 38 YDSLII-RARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEK 116 (822)
T ss_pred HHHHHH-HHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcC
Confidence 444444 4599999999999999997 4421 23388888999999999999999999864443 3444 55788889
Q ss_pred ChhHHHHHhhcCCC---CCcccHHHHHHHHHhcCCHhHHHHHHHhccc--CCchhHHHHHHHHHhcCChhHHHHHHccCC
Q 007519 119 ELNEARKVFNSMPI---KNVISWNAMIAGYVECCMMGEAIVLFEEMEE--RNVVTWTSMISGYCRAGEVEEGYCLFRRMP 193 (600)
Q Consensus 119 ~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 193 (600)
++++|+++|+++.+ .++..+..++..+...++.++|.+.++.+.+ |+...+..++..+...++..+|++.++++.
T Consensus 117 dyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll 196 (822)
T PRK14574 117 RWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAV 196 (822)
T ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 99999999999987 3456677778889999999999999999985 444444444444444666666999999987
Q ss_pred C--C-CcchHHHHHHHHHhcCChhHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHhcCChhhHHHHhcccCCC--Cc-h
Q 007519 194 R--K-NVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVR--DE-I 267 (600)
Q Consensus 194 ~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~-~ 267 (600)
+ | +...+..++.++.+.|-...|+++..+-... +.+. ....+ +.+.+.+..+....+ +. .
T Consensus 197 ~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~----f~~~--~~~~l--------~~~~~a~~vr~a~~~~~~~~~ 262 (822)
T PRK14574 197 RLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNL----VSAE--HYRQL--------ERDAAAEQVRMAVLPTRSETE 262 (822)
T ss_pred HhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc----cCHH--HHHHH--------HHHHHHHHHhhcccccccchh
Confidence 5 4 4567788889999999999999876654322 1221 11111 111122222111100 00 0
Q ss_pred hHHHHHHHHHhcCChHHHHHHHhhCC----C-CCh-h----hHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHH
Q 007519 268 SWTSMIDGYLSVGQVSNAYYLFHNMP----D-RDA-V----AWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSV 337 (600)
Q Consensus 268 ~~~~l~~~~~~~~~~~~A~~~~~~~~----~-~~~-~----~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ 337 (600)
-+. -.+.|+.-++.+. . |.. . ..--.+.++...|+..++++.|+.+...|.+....+-..
T Consensus 263 r~~----------~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a 332 (822)
T PRK14574 263 RFD----------IADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRW 332 (822)
T ss_pred hHH----------HHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHH
Confidence 000 1122222222221 1 211 1 112234466778888888888888888776655667778
Q ss_pred HHHHHhcccchhhhHHHHHHHhhhcC-----CCchhHHHHHHHHHHhcCChHHHHHHHhcCCC--C-------------C
Q 007519 338 LFGAAGATANIDLGRQIHCVLMKTES-----ESDLILENCLISMYAKCGVIDNAYNIFSNMVS--R-------------D 397 (600)
Q Consensus 338 l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-------------~ 397 (600)
+..+|...+.+++|..++..+..... .++......|..+|...+++++|..+++++.. | |
T Consensus 333 ~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn 412 (822)
T PRK14574 333 AASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPN 412 (822)
T ss_pred HHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCC
Confidence 88888888888888888887755431 22333356788888888888888888887752 1 1
Q ss_pred h---hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCC-CcchHH
Q 007519 398 L---VSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQP-GPEHYV 473 (600)
Q Consensus 398 ~---~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~ 473 (600)
. ..+..++..+...|+..+|++.++++.... +-|......+...+...|.+.+|.+.++.+. .+.| +..+..
T Consensus 413 ~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~---~l~P~~~~~~~ 488 (822)
T PRK14574 413 DDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVE---SLAPRSLILER 488 (822)
T ss_pred ccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh---hhCCccHHHHH
Confidence 1 234456777889999999999999998753 5566777788889999999999999997766 3477 467777
Q ss_pred HHHHHHhhcCChHHHHHHHHhCC-CCCCHHH
Q 007519 474 SMINLLGRAGKIKEAEEFVLRLP-FEPDHRI 503 (600)
Q Consensus 474 ~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~ 503 (600)
..+..+...|++++|..+.+.+. ..|+...
T Consensus 489 ~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~ 519 (822)
T PRK14574 489 AQAETAMALQEWHQMELLTDDVISRSPEDIP 519 (822)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHhhCCCchh
Confidence 88999999999999999987764 4454443
No 28
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.78 E-value=2.5e-15 Score=148.11 Aligned_cols=541 Identities=12% Similarity=0.082 Sum_probs=360.4
Q ss_pred CCCCccchhHHHHHHHhcCChhhHHHHhccCCC---CCcchHHHHHHHHHcCCChhHHHHHhhhcC---CCChhhHHHHH
Q 007519 7 PKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQ---RNVVSYNAMLSGFLQNGRLSEARRLFEEMP---ERNVVSWTAMI 80 (600)
Q Consensus 7 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~ 80 (600)
++|.+..+-..+..+...|+.++|.+++.++.+ .+..+|.+|...|-++|+.+++...+-.+- ..|...|..+.
T Consensus 135 l~~~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~la 214 (895)
T KOG2076|consen 135 LAPELRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLA 214 (895)
T ss_pred cCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHH
Confidence 444455566666677777999999999999886 456789999999999999999987765443 35668999999
Q ss_pred HHHHhcCChHHHHHHhhcCCCC---CceeHHHHHHHHHHCCChhHHHHHhhcCCCCCc----c----cHHHHHHHHHhcC
Q 007519 81 CGLADAGRVCEARKLFEEMPER---NVVSWNSMVVGLIRNGELNEARKVFNSMPIKNV----I----SWNAMIAGYVECC 149 (600)
Q Consensus 81 ~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~----~~~~l~~~~~~~~ 149 (600)
....+.|++++|.-.|.++.+. |...+-.-+..|-+.|+...|..-|.++...++ . .-...+..+...+
T Consensus 215 dls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~ 294 (895)
T KOG2076|consen 215 DLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHN 294 (895)
T ss_pred HHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999873 333444557788899999999999998876222 2 2233456677788
Q ss_pred CHhHHHHHHHhccc-----CCchhHHHHHHHHHhcCChhHHHHHHccCCC--------------------------CCcc
Q 007519 150 MMGEAIVLFEEMEE-----RNVVTWTSMISGYCRAGEVEEGYCLFRRMPR--------------------------KNVV 198 (600)
Q Consensus 150 ~~~~A~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------------------------~~~~ 198 (600)
+.+.|.+.++.... .+...++.++..|.+...++.|......... ++..
T Consensus 295 ~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~ 374 (895)
T KOG2076|consen 295 ERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKEL 374 (895)
T ss_pred HHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCC
Confidence 88999999887763 3456677888888888888888776654432 1111
Q ss_pred hHH----HHHHHHHhcCChhHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHhcCChhhHHHHhcccCC----CCchhHH
Q 007519 199 SWT----AMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPV----RDEISWT 270 (600)
Q Consensus 199 ~~~----~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~ 270 (600)
+|. .++-++......+....+..-.... ...+.-+...|.-+..++...|++.+|+.+|..+.. .+..+|-
T Consensus 375 s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~-n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~ 453 (895)
T KOG2076|consen 375 SYDLRVIRLMICLVHLKERELLEALLHFLVED-NVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWY 453 (895)
T ss_pred CccchhHhHhhhhhcccccchHHHHHHHHHHh-cCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhH
Confidence 121 2233334444444444444444433 112334567888999999999999999999999872 3566899
Q ss_pred HHHHHHHhcCChHHHHHHHhhCCC--C-ChhhHHHHHHHHHhCCChhHHHHHHHHHH--------HCCCCCChhHHHHHH
Q 007519 271 SMIDGYLSVGQVSNAYYLFHNMPD--R-DAVAWTAMISGLVQNELFVEATYLFMEMR--------AHGVPPLNATFSVLF 339 (600)
Q Consensus 271 ~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~--------~~g~~p~~~~~~~l~ 339 (600)
.+..+|...|..++|.+.|..+.. | +...--.|...+.+.|++++|++.++.+. ..+..|+........
T Consensus 454 ~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~ 533 (895)
T KOG2076|consen 454 KLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRC 533 (895)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHH
Confidence 999999999999999999998866 3 34455667778899999999999999854 223445555555555
Q ss_pred HHHhcccchhhhHHHHHHHhhhc----------------------CCCchhHHHHHHHHHHhcCChHHHHHHHhcC----
Q 007519 340 GAAGATANIDLGRQIHCVLMKTE----------------------SESDLILENCLISMYAKCGVIDNAYNIFSNM---- 393 (600)
Q Consensus 340 ~~~~~~~~~~~a~~~~~~~~~~~----------------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~---- 393 (600)
..+...|+.++-..+...+.... .+........++.+-.+.++......-...-
T Consensus 534 d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~ 613 (895)
T KOG2076|consen 534 DILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFR 613 (895)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhh
Confidence 66777777665443333222211 1111112222333333333322221111111
Q ss_pred ----CCCCh----hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC--CCh-h-HH-HHHHHHhcccCchHHHHHHHHHHH
Q 007519 394 ----VSRDL----VSWNSMVMGFSHHGLANETLKVFESMLESGTH--PNS-V-TF-LGILSACSHAGLVSRGWELFNAMF 460 (600)
Q Consensus 394 ----~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~--p~~-~-~~-~~l~~~~~~~g~~~~a~~~~~~~~ 460 (600)
..-+. ..+.-++.++++.+++++|+.+...+.....- ++. . .+ ...+.++...+++..|...++.+.
T Consensus 614 ~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i 693 (895)
T KOG2076|consen 614 AVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVI 693 (895)
T ss_pred hhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 01112 23455677899999999999999988775322 222 1 22 334567788999999999999998
Q ss_pred hhcCCCCC---cchHHHHHHHHhhcCChHHHHHHHHhC-CCCCCH-HHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCC
Q 007519 461 DVYKIQPG---PEHYVSMINLLGRAGKIKEAEEFVLRL-PFEPDH-RIWGALLGACGFCEGNAEIAEHAAKRLLELDPLN 535 (600)
Q Consensus 461 ~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~ 535 (600)
..++...+ ...|+.......+.|+-.-=.+++..+ ..+|+. .....+.+...+..+.+..|+..+-++....|++
T Consensus 694 ~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~pd~ 773 (895)
T KOG2076|consen 694 TQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQNPDS 773 (895)
T ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHhCCCC
Confidence 76444332 445665555555666544444444443 233433 2222222223337789999999999999999999
Q ss_pred CCcHHHHhHHHHh
Q 007519 536 APAHVVLCNIYAA 548 (600)
Q Consensus 536 ~~~~~~l~~~~~~ 548 (600)
|.+-..++.++..
T Consensus 774 Pl~nl~lglafih 786 (895)
T KOG2076|consen 774 PLINLCLGLAFIH 786 (895)
T ss_pred cHHHHHHHHHHHH
Confidence 9988888887754
No 29
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.77 E-value=4.5e-14 Score=134.16 Aligned_cols=457 Identities=13% Similarity=0.089 Sum_probs=334.0
Q ss_pred HHHCCChhHHHHHhhcCCC---CCcccHHHHHHHHHhcCCHhHHHHHHHhcc--------cCCchhHHHHHHHHHhcCCh
Q 007519 114 LIRNGELNEARKVFNSMPI---KNVISWNAMIAGYVECCMMGEAIVLFEEME--------ERNVVTWTSMISGYCRAGEV 182 (600)
Q Consensus 114 ~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--------~~~~~~~~~l~~~~~~~g~~ 182 (600)
+.+..-++.|.+++++..+ .+...|.+-...--..|..+...+++++.. +-+...|..=...|-+.|..
T Consensus 416 larLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv 495 (913)
T KOG0495|consen 416 LARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSV 495 (913)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCCh
Confidence 3444556666666666554 345555555555556666666666665543 12333344444444444554
Q ss_pred hHHHHHHccCCC------CCcchHHHHHHHHHhcCChhHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHhcCChhhHHH
Q 007519 183 EEGYCLFRRMPR------KNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQN 256 (600)
Q Consensus 183 ~~A~~~~~~~~~------~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 256 (600)
-.+..+...... .-..+|..-...|.+.+.++-|..+|...++. ++.+...|......--..|..+.-..
T Consensus 496 ~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv----fp~k~slWlra~~~ek~hgt~Esl~A 571 (913)
T KOG0495|consen 496 ITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV----FPCKKSLWLRAAMFEKSHGTRESLEA 571 (913)
T ss_pred hhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh----ccchhHHHHHHHHHHHhcCcHHHHHH
Confidence 444444443331 12346777778888888889999999888864 34455666666666666788888888
Q ss_pred HhcccC---CCCchhHHHHHHHHHhcCChHHHHHHHhhCCC---CChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCC
Q 007519 257 LFDTVP---VRDEISWTSMIDGYLSVGQVSNAYYLFHNMPD---RDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPP 330 (600)
Q Consensus 257 ~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 330 (600)
++.+.. +.....|-.....+-..|++..|..++....+ .+...|-..+..-..+.++++|..+|.+.... .|
T Consensus 572 llqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~--sg 649 (913)
T KOG0495|consen 572 LLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSI--SG 649 (913)
T ss_pred HHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CC
Confidence 888876 44555666667778888999999998887655 35567888888888999999999999988774 67
Q ss_pred ChhHHHHHHHHHhcccchhhhHHHHHHHhhhcCCCchhHHHHHHHHHHhcCChHHHHHHHhcCC---CCChhhHHHHHHH
Q 007519 331 LNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMV---SRDLVSWNSMVMG 407 (600)
Q Consensus 331 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~ 407 (600)
+...|..-+..---.++.++|.+++++..+. ++.-...|..+.+.+...++++.|...|..-. +..+..|-.+...
T Consensus 650 TeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakl 728 (913)
T KOG0495|consen 650 TERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKL 728 (913)
T ss_pred cchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHH
Confidence 7777766666666788899999999877765 33345678888899999999999999998776 4456678888888
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCCCcchHHHHHHHHhhcCChHH
Q 007519 408 FSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKE 487 (600)
Q Consensus 408 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 487 (600)
--+.|..-.|..+|++..-.+ +-+...|...++.-.+.|+.+.|..+..++.+. ++.+-..|..-|.+..+.++-..
T Consensus 729 eEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe--cp~sg~LWaEaI~le~~~~rkTk 805 (913)
T KOG0495|consen 729 EEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQE--CPSSGLLWAEAIWLEPRPQRKTK 805 (913)
T ss_pred HHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccchhHHHHHHhccCcccchH
Confidence 888899999999999988764 556778888999999999999999999988874 44467788888888888888888
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCCCcHHHHhHHHHhhCCcHHHHHHHHHHhhcCC
Q 007519 488 AEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGV 567 (600)
Q Consensus 488 A~~~~~~~~~~p~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 567 (600)
....+++... |+.++..+...+- ....++.|..-|.++++.+|++..++..+...+.+.|.-++-.++++.....
T Consensus 806 s~DALkkce~--dphVllaia~lfw-~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~-- 880 (913)
T KOG0495|consen 806 SIDALKKCEH--DPHVLLAIAKLFW-SEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETA-- 880 (913)
T ss_pred HHHHHHhccC--CchhHHHHHHHHH-HHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhcc--
Confidence 8888877764 4444445555554 7889999999999999999999999999999999999888877788655432
Q ss_pred ccCCCcceEEECCeEEEE
Q 007519 568 RKVPGCSWLMRNGGIQMF 585 (600)
Q Consensus 568 ~~~~~~~~~~~~~~~~~~ 585 (600)
.|.-|..|+-+++.+.++
T Consensus 881 EP~hG~~W~avSK~i~n~ 898 (913)
T KOG0495|consen 881 EPTHGELWQAVSKDIKNW 898 (913)
T ss_pred CCCCCcHHHHHhhhHHhc
Confidence 244467787776665543
No 30
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.71 E-value=1.9e-15 Score=137.22 Aligned_cols=270 Identities=12% Similarity=0.132 Sum_probs=140.6
Q ss_pred HHhcCChhHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHhcCChhhHHHHhcccCCC---CchhHHHHHHHHHhcCChH
Q 007519 207 FAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVR---DEISWTSMIDGYLSVGQVS 283 (600)
Q Consensus 207 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~ 283 (600)
+.++|+++.|+++++-..+. ++....-..+-.+.+..+.--.++..|.++-+..... ++...+.-.+.....|+++
T Consensus 429 ~lk~~d~~~aieilkv~~~k-dnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~d 507 (840)
T KOG2003|consen 429 LLKNGDIEGAIEILKVFEKK-DNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLD 507 (840)
T ss_pred HHhccCHHHHHHHHHHHHhc-cchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHH
Confidence 55666666666666666543 1111111111112222222233455555554444322 2222222222333456666
Q ss_pred HHHHHHhhCCCCChhhHHHHH---HHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhcccchhhhHHHHHHHhh
Q 007519 284 NAYYLFHNMPDRDAVAWTAMI---SGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMK 360 (600)
Q Consensus 284 ~A~~~~~~~~~~~~~~~~~li---~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 360 (600)
+|...|.+....|...-.+|. -.+-..|+.++|++.|-++... +..+...+..+...|....+..+|.+++.....
T Consensus 508 ka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~s 586 (840)
T KOG2003|consen 508 KAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANS 586 (840)
T ss_pred HHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcc
Confidence 666666666554443222222 2345566666666666555432 233444555555666666666666665554433
Q ss_pred hcCCCchhHHHHHHHHHHhcCChHHHHHHHhcCC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHH
Q 007519 361 TESESDLILENCLISMYAKCGVIDNAYNIFSNMV---SRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFL 437 (600)
Q Consensus 361 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~ 437 (600)
. ++.|+.+.+-|.+.|-+.|+-..|.+.+-+-- +-+..+..=|...|....-+++++.+|++..- +.|+..-|.
T Consensus 587 l-ip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwq 663 (840)
T KOG2003|consen 587 L-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQ 663 (840)
T ss_pred c-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHH
Confidence 2 33456666666666666666666666543322 44555555555556666666666666666543 566666666
Q ss_pred HHHHHh-cccCchHHHHHHHHHHHhhcCCCCCcchHHHHHHHHhhcC
Q 007519 438 GILSAC-SHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAG 483 (600)
Q Consensus 438 ~l~~~~-~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 483 (600)
.++..| .+.|++++|.++++...+ .++-+..++.-|++.+...|
T Consensus 664 lmiasc~rrsgnyqka~d~yk~~hr--kfpedldclkflvri~~dlg 708 (840)
T KOG2003|consen 664 LMIASCFRRSGNYQKAFDLYKDIHR--KFPEDLDCLKFLVRIAGDLG 708 (840)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHH--hCccchHHHHHHHHHhcccc
Confidence 665333 456667777766666654 33335666666666665555
No 31
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.70 E-value=6.5e-13 Score=126.43 Aligned_cols=451 Identities=13% Similarity=0.101 Sum_probs=362.3
Q ss_pred HHHHHHhcCChHHHHHHhhcCCC---CCceeHHHHHHHHHHCCChhHHHHHhhcCCC--------CCcccHHHHHHHHHh
Q 007519 79 MICGLADAGRVCEARKLFEEMPE---RNVVSWNSMVVGLIRNGELNEARKVFNSMPI--------KNVISWNAMIAGYVE 147 (600)
Q Consensus 79 l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--------~~~~~~~~l~~~~~~ 147 (600)
|.-+|.+..-|+.|.+++.+..+ .+..+|..-...--.+|+.+...+++.+... .+...|..=...|-.
T Consensus 412 LwlAlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~ 491 (913)
T KOG0495|consen 412 LWLALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACED 491 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhh
Confidence 44466777888999999888776 5788899888888999999999998887643 455566666677777
Q ss_pred cCCHhHHHHHHHhccc------CCchhHHHHHHHHHhcCChhHHHHHHccCCC---CCcchHHHHHHHHHhcCChhHHHH
Q 007519 148 CCMMGEAIVLFEEMEE------RNVVTWTSMISGYCRAGEVEEGYCLFRRMPR---KNVVSWTAMIGGFAWNGFHKESLL 218 (600)
Q Consensus 148 ~~~~~~A~~~~~~~~~------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~ 218 (600)
.|.+-.+..+...... .-..+|..-...|.+.+.++-|..+|....+ .+...|...+..--..|..+....
T Consensus 492 agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~A 571 (913)
T KOG0495|consen 492 AGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEA 571 (913)
T ss_pred cCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHH
Confidence 7888877777776652 3346888888999999999999999988776 355678877777778899999999
Q ss_pred HHHHHHhhhcCCCCCChhhHHHHHHHHHhcCChhhHHHHhcccC---CCCchhHHHHHHHHHhcCChHHHHHHHhhCCC-
Q 007519 219 LFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVP---VRDEISWTSMIDGYLSVGQVSNAYYLFHNMPD- 294 (600)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~- 294 (600)
+|++.... .+-....+....+.+-..|+...|..++..+. +.+..+|-.-+.......+++.|..+|.+...
T Consensus 572 llqkav~~----~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~ 647 (913)
T KOG0495|consen 572 LLQKAVEQ----CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSI 647 (913)
T ss_pred HHHHHHHh----CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc
Confidence 99999975 33344556666677788899999999998876 55777899999999999999999999998765
Q ss_pred -CChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCh-hHHHHHHHHHhcccchhhhHHHHHHHhhhcCCCchhHHHH
Q 007519 295 -RDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLN-ATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENC 372 (600)
Q Consensus 295 -~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 372 (600)
++...|..-+..-.-.++.++|++++++.++. -|+- ..|..+...+.+.++++.|...|..-.+. .+..+..|-.
T Consensus 648 sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWll 724 (913)
T KOG0495|consen 648 SGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLL 724 (913)
T ss_pred CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHH
Confidence 67778877777777889999999999998885 5554 45666666888899999998888754332 3446778888
Q ss_pred HHHHHHhcCChHHHHHHHhcCC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccCch
Q 007519 373 LISMYAKCGVIDNAYNIFSNMV---SRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLV 449 (600)
Q Consensus 373 l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~ 449 (600)
|...--+.|.+-+|+.++++.. +.+...|-..|..-.+.|+.+.|..+..+..+. ++.+...|..-|....+.++-
T Consensus 725 LakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~rk 803 (913)
T KOG0495|consen 725 LAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQRK 803 (913)
T ss_pred HHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCcccc
Confidence 8888889999999999999886 567889999999999999999999999888875 666777888888777777776
Q ss_pred HHHHHHHHHHHhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhCC-CCCCH-HHHHHHHHHHhhhhCCHHHHHHHHHH
Q 007519 450 SRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLP-FEPDH-RIWGALLGACGFCEGNAEIAEHAAKR 527 (600)
Q Consensus 450 ~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~-~~~~~l~~~~~~~~g~~~~a~~~~~~ 527 (600)
..+...+++ +.-|+.+...++..+....++++|.+.|.+.. ..||. .+|..+..... ..|.-++-.+++.+
T Consensus 804 Tks~DALkk------ce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel-~hG~eed~kev~~~ 876 (913)
T KOG0495|consen 804 TKSIDALKK------CEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFEL-RHGTEEDQKEVLKK 876 (913)
T ss_pred hHHHHHHHh------ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHH-HhCCHHHHHHHHHH
Confidence 666665553 35577889999999999999999999999875 66765 47777777777 99999999999999
Q ss_pred HHhhCCCCCCcHHHHhH
Q 007519 528 LLELDPLNAPAHVVLCN 544 (600)
Q Consensus 528 ~~~~~p~~~~~~~~l~~ 544 (600)
...-+|.+...+..+..
T Consensus 877 c~~~EP~hG~~W~avSK 893 (913)
T KOG0495|consen 877 CETAEPTHGELWQAVSK 893 (913)
T ss_pred HhccCCCCCcHHHHHhh
Confidence 99999976666665544
No 32
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.68 E-value=7.9e-13 Score=121.15 Aligned_cols=454 Identities=15% Similarity=0.109 Sum_probs=318.3
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHhhcCCC---CCceeHHHHHHHHHHCCChhHHHHHhhcCCC--CCc-ccHHHHHHHH
Q 007519 72 NVVSWTAMICGLADAGRVCEARKLFEEMPE---RNVVSWNSMVVGLIRNGELNEARKVFNSMPI--KNV-ISWNAMIAGY 145 (600)
Q Consensus 72 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~-~~~~~l~~~~ 145 (600)
+...|-...+--..++++..|..+|++.+. .+...|.-.+.+-.++..+..|..++++... |.+ ..+.-.+-.-
T Consensus 72 ~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymE 151 (677)
T KOG1915|consen 72 NMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYME 151 (677)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 334455555555567888888888888876 5666788888888888888888888888776 433 2334444444
Q ss_pred HhcCCHhHHHHHHHhcc--cCCchhHHHHHHHHHhcCChhHHHHHHccCC--CCCcchHHHHHHHHHhcCChhHHHHHHH
Q 007519 146 VECCMMGEAIVLFEEME--ERNVVTWTSMISGYCRAGEVEEGYCLFRRMP--RKNVVSWTAMIGGFAWNGFHKESLLLFI 221 (600)
Q Consensus 146 ~~~~~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~ 221 (600)
-..|++..|.++|+... +|+..+|.+.|..-.+.+.++.|..++++.. .|++.+|......-.+.|....+..+|+
T Consensus 152 E~LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~Vye 231 (677)
T KOG1915|consen 152 EMLGNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYE 231 (677)
T ss_pred HHhcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 56788888999888766 5888889998888888888899998888765 5888888888888888888888888888
Q ss_pred HHHhhhcCCC-CCChhhHHHHHHHHHhcCChhhHHHHhcccC---CCC--chhHHHHHHHHHhcCChHHHHHHH------
Q 007519 222 EMKGICDNGN-NCNVQSCNSMINGYIRFGRLEEAQNLFDTVP---VRD--EISWTSMIDGYLSVGQVSNAYYLF------ 289 (600)
Q Consensus 222 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~--~~~~~~l~~~~~~~~~~~~A~~~~------ 289 (600)
...+.+ |. ..+...+++....-.++..++.|.-+|+-.. +.+ ...|..+...--+-|+.....+..
T Consensus 232 rAie~~--~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~ 309 (677)
T KOG1915|consen 232 RAIEFL--GDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKF 309 (677)
T ss_pred HHHHHh--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhh
Confidence 887652 11 1122334444444445677888888877665 222 334444444444455544333322
Q ss_pred --hhCCC---CChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChh-------HHHHHHHHH---hcccchhhhHHH
Q 007519 290 --HNMPD---RDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNA-------TFSVLFGAA---GATANIDLGRQI 354 (600)
Q Consensus 290 --~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-------~~~~l~~~~---~~~~~~~~a~~~ 354 (600)
+...+ -|..+|--.+..-...|+.+...++|++.... ++|-.. .|..+=-+| ....+++.+.++
T Consensus 310 qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~v 388 (677)
T KOG1915|consen 310 QYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQV 388 (677)
T ss_pred HHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 22222 25567777777777889999999999998875 566322 222221222 356788899999
Q ss_pred HHHHhhhcCCCchhHHHHH----HHHHHhcCChHHHHHHHhcCC--CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 007519 355 HCVLMKTESESDLILENCL----ISMYAKCGVIDNAYNIFSNMV--SRDLVSWNSMVMGFSHHGLANETLKVFESMLESG 428 (600)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~l----~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 428 (600)
++...+ -++....++.-+ ...-.++.++..|.+++...+ -|...+|...|..-.+.++++.+..++++..+-+
T Consensus 389 yq~~l~-lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~ 467 (677)
T KOG1915|consen 389 YQACLD-LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS 467 (677)
T ss_pred HHHHHh-hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 998877 334444444433 344467899999999999887 6788889999999999999999999999999864
Q ss_pred CCCChhHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhCC-CCCCHHHHHHH
Q 007519 429 THPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLP-FEPDHRIWGAL 507 (600)
Q Consensus 429 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l 507 (600)
+-+..+|......-...|+.+.|..+|..+.....+......|-+.|..=...|.++.|..+++++. ..+...+|-++
T Consensus 468 -Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~kvWisF 546 (677)
T KOG1915|consen 468 -PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVKVWISF 546 (677)
T ss_pred -hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccchHHHhH
Confidence 4566788777777788899999999999998753333345566777777789999999999999875 44455566655
Q ss_pred HHHHh----hhhC-----------CHHHHHHHHHHHHh
Q 007519 508 LGACG----FCEG-----------NAEIAEHAAKRLLE 530 (600)
Q Consensus 508 ~~~~~----~~~g-----------~~~~a~~~~~~~~~ 530 (600)
...-. ...+ +...|..+|+++..
T Consensus 547 A~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~ 584 (677)
T KOG1915|consen 547 AKFEASASEGQEDEDLAELEITDENIKRARKIFERANT 584 (677)
T ss_pred HHHhccccccccccchhhhhcchhHHHHHHHHHHHHHH
Confidence 44211 0223 45678888888876
No 33
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.67 E-value=1.6e-12 Score=128.71 Aligned_cols=514 Identities=12% Similarity=0.103 Sum_probs=326.9
Q ss_pred HHHHHHHHHcCCChhHHHHHhhhcCC---CChhhHHHHHHHHHhcCChHHHHHHhhcCC--C-CCceeHHHHHHHHHHCC
Q 007519 45 YNAMLSGFLQNGRLSEARRLFEEMPE---RNVVSWTAMICGLADAGRVCEARKLFEEMP--E-RNVVSWNSMVVGLIRNG 118 (600)
Q Consensus 45 ~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~-~~~~~~~~l~~~~~~~~ 118 (600)
.-..++.+...|++++|.+++.++.+ .+...|.+|...|-..|+.+++...+=.+- . .|...|-.+.....+.|
T Consensus 142 ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~ 221 (895)
T KOG2076|consen 142 LLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLG 221 (895)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcc
Confidence 33444555666999999999999986 355789999999999999999988654332 2 56678999999999999
Q ss_pred ChhHHHHHhhcCCCC---CcccHHHHHHHHHhcCCHhHHHHHHHhcccCCc--------hhHHHHHHHHHhcCChhHHHH
Q 007519 119 ELNEARKVFNSMPIK---NVISWNAMIAGYVECCMMGEAIVLFEEMEERNV--------VTWTSMISGYCRAGEVEEGYC 187 (600)
Q Consensus 119 ~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--------~~~~~l~~~~~~~g~~~~A~~ 187 (600)
.++.|.-.|.+..+. +...+.--+..|-+.|+...|...|.++.+.++ ..--..+..+...++-+.|.+
T Consensus 222 ~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~ 301 (895)
T KOG2076|consen 222 NINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAK 301 (895)
T ss_pred cHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 999999999999873 334444556778899999999999998885333 122234556677777788888
Q ss_pred HHccCCC-----CCcchHHHHHHHHHhcCChhHHHHHHHHHHhh----------------------h--cCCCCCChhhH
Q 007519 188 LFRRMPR-----KNVVSWTAMIGGFAWNGFHKESLLLFIEMKGI----------------------C--DNGNNCNVQSC 238 (600)
Q Consensus 188 ~~~~~~~-----~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----------------------~--~~~~~~~~~~~ 238 (600)
.++.... -+...++.++..+.+...++.|......+... + ..+..++...+
T Consensus 302 ~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~ 381 (895)
T KOG2076|consen 302 ALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVI 381 (895)
T ss_pred HHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhH
Confidence 8877654 24457888999999999999999988888761 1 11222333331
Q ss_pred HHHHHHHHhc--CChhhHHHHhcccC----CCCchhHHHHHHHHHhcCChHHHHHHHhhCCC----CChhhHHHHHHHHH
Q 007519 239 NSMINGYIRF--GRLEEAQNLFDTVP----VRDEISWTSMIDGYLSVGQVSNAYYLFHNMPD----RDAVAWTAMISGLV 308 (600)
Q Consensus 239 ~~l~~~~~~~--~~~~~a~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~li~~~~ 308 (600)
. +.-++... +...+++..+-... ..+...+..+..+|...|++.+|+.+|..+.. .+...|-.+..+|.
T Consensus 382 r-l~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~ 460 (895)
T KOG2076|consen 382 R-LMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYM 460 (895)
T ss_pred h-HhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHH
Confidence 1 11222233 33333333222111 23455677888889999999999999988866 35678888889999
Q ss_pred hCCChhHHHHHHHHHHHCCCCCChh-HHHHHHHHHhcccchhhhHHHHHHHh--------hhcCCCchhHHHHHHHHHHh
Q 007519 309 QNELFVEATYLFMEMRAHGVPPLNA-TFSVLFGAAGATANIDLGRQIHCVLM--------KTESESDLILENCLISMYAK 379 (600)
Q Consensus 309 ~~g~~~~a~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~ 379 (600)
..|.++.|++.|+..+.. .|+.. .-..|-..+.+.|+.++|.+.+..+. ..+..|...+.....+.+..
T Consensus 461 ~l~e~e~A~e~y~kvl~~--~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~ 538 (895)
T KOG2076|consen 461 ELGEYEEAIEFYEKVLIL--APDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQ 538 (895)
T ss_pred HHhhHHHHHHHHHHHHhc--CCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHH
Confidence 999999999999988875 45543 33445556778888888888887633 33345555555566677777
Q ss_pred cCChHHHHHHHhcCCC---------C-----------------ChhhHHHHHHHHHhcCChHHHHHH------HHHHHHc
Q 007519 380 CGVIDNAYNIFSNMVS---------R-----------------DLVSWNSMVMGFSHHGLANETLKV------FESMLES 427 (600)
Q Consensus 380 ~~~~~~A~~~~~~~~~---------~-----------------~~~~~~~l~~~~~~~~~~~~a~~~------~~~m~~~ 427 (600)
.|+.++=..+-..|.. | .......++.+-.+.++......- +......
T Consensus 539 ~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~ 618 (895)
T KOG2076|consen 539 VGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELR 618 (895)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhc
Confidence 7777665444333320 0 111122223333333322211111 1111112
Q ss_pred CCCCCh--hHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCCCcc----hHHHHHHHHhhcCChHHHHHHHHhCC-----
Q 007519 428 GTHPNS--VTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPE----HYVSMINLLGRAGKIKEAEEFVLRLP----- 496 (600)
Q Consensus 428 ~~~p~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~----- 496 (600)
|+.-+. ..+.-++.++++.+.+++|..+...+....-+.-+.. .-...+.+....+++..|.+.++.+.
T Consensus 619 ~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~ 698 (895)
T KOG2076|consen 619 GLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQF 698 (895)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhh
Confidence 222222 2344556677788888888888887776533333322 22334455567788888888777763
Q ss_pred -CCCC-HHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCC-CCcHHHHhHHHHhhCCcHHHHHHHHHH
Q 007519 497 -FEPD-HRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLN-APAHVVLCNIYAASGRHVEEHKLRMDM 562 (600)
Q Consensus 497 -~~p~-~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 562 (600)
..|. ...|+..++... ..|+-.--.+.+.++....|++ +..+...+......|.+..|.+.+-..
T Consensus 699 ~~~~~q~~l~n~~~s~~~-~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra 766 (895)
T KOG2076|consen 699 YLDVYQLNLWNLDFSYFS-KYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRA 766 (895)
T ss_pred hhhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHH
Confidence 1332 234454444444 5555555555555655566655 555556666677788888888855443
No 34
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.67 E-value=4e-12 Score=115.17 Aligned_cols=425 Identities=15% Similarity=0.140 Sum_probs=267.8
Q ss_pred cchHHHHHHHHHcCCChhHHHHHhhhcCCCCh----hhHHHHHHH--HHhcCChHHH-HHHhhcCCC---CCceeHHHHH
Q 007519 42 VVSYNAMLSGFLQNGRLSEARRLFEEMPERNV----VSWTAMICG--LADAGRVCEA-RKLFEEMPE---RNVVSWNSMV 111 (600)
Q Consensus 42 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~----~~~~~l~~~--~~~~g~~~~A-~~~~~~~~~---~~~~~~~~l~ 111 (600)
+++=+.|+... .+|...++-=+|+.|...+. ..-..|+.. |....++--| .+.|-.|.. .+..+|
T Consensus 116 V~~E~nL~kmI-S~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sW---- 190 (625)
T KOG4422|consen 116 VETENNLLKMI-SSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSW---- 190 (625)
T ss_pred hcchhHHHHHH-hhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccccccccc----
Confidence 34566666654 67889999999999886322 233333332 3333333222 223333332 333333
Q ss_pred HHHHHCCChhHHHHHhhcCCCCCcccHHHHHHHHHhcCCHhHHHHHHHhcc----cCCchhHHHHHHHHHhcCChhHHHH
Q 007519 112 VGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEME----ERNVVTWTSMISGYCRAGEVEEGYC 187 (600)
Q Consensus 112 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~ 187 (600)
+.|+..+ ++-+.......++.++|.+.++-...++|.+++++.. +.+..++|.+|.+-.-..+-+-.-+
T Consensus 191 ----K~G~vAd---L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~K~Lv~E 263 (625)
T KOG4422|consen 191 ----KSGAVAD---LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVGKKLVAE 263 (625)
T ss_pred ----ccccHHH---HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhccHHHHHH
Confidence 3344433 5555555677899999999999999999999999877 3577788888876544433222223
Q ss_pred HHccCCCCCcchHHHHHHHHHhcCChhH----HHHHHHHHHhhhcCCCCCChhhHHHHHHHHHhcCChhh-HHHHhcccC
Q 007519 188 LFRRMPRKNVVSWTAMIGGFAWNGFHKE----SLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEE-AQNLFDTVP 262 (600)
Q Consensus 188 ~~~~~~~~~~~~~~~li~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~ 262 (600)
....-..||..|+|+++.+..+.|+++. |++++.+|++. |+.|+..+|..+|..+++.++..+ +..++.++.
T Consensus 264 Misqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKei---GVePsLsSyh~iik~f~re~dp~k~as~~i~dI~ 340 (625)
T KOG4422|consen 264 MISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEI---GVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQ 340 (625)
T ss_pred HHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHh---CCCcchhhHHHHHHHhcccCCchhhhHHHHHHHH
Confidence 3333335999999999999999997764 56788999988 999999999999999999888754 334433332
Q ss_pred ------------CCCchhHHHHHHHHHhcCChHHHHHHHhhCCC--------CC---hhhHHHHHHHHHhCCChhHHHHH
Q 007519 263 ------------VRDEISWTSMIDGYLSVGQVSNAYYLFHNMPD--------RD---AVAWTAMISGLVQNELFVEATYL 319 (600)
Q Consensus 263 ------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--------~~---~~~~~~li~~~~~~g~~~~a~~~ 319 (600)
+.+...+...+..|.+..+.+-|.++..-+.. ++ ..-|..+....|+....+..+.+
T Consensus 341 N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~ 420 (625)
T KOG4422|consen 341 NSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKW 420 (625)
T ss_pred HhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677888888888888888877655543 12 23466677788888899999999
Q ss_pred HHHHHHCCCCCChhHHHHHHHHHhcccchhhhHHHHHHHhhhcCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCChh
Q 007519 320 FMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLV 399 (600)
Q Consensus 320 ~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 399 (600)
|+.|+-.-+-|+..+...++++....+.++-..+++..+...|.+.....-.-++..+++.+ ..|+..
T Consensus 421 Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k------------~hp~tp 488 (625)
T KOG4422|consen 421 YEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDK------------LHPLTP 488 (625)
T ss_pred HHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCC------------CCCCCh
Confidence 99999888889999999999999999999999999988888776554443333333333221 022211
Q ss_pred hHHHHHHHHHh--cCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCCCcchHHHHH-
Q 007519 400 SWNSMVMGFSH--HGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMI- 476 (600)
Q Consensus 400 ~~~~l~~~~~~--~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~- 476 (600)
.-..+-.+.++ ..-.+.....-.+|.+...+| ...+.++..+.+.|..++|.+++....+.+.-.|.....++|+
T Consensus 489 ~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~~~~--t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~E 566 (625)
T KOG4422|consen 489 EREQLQVAFAKCAADIKEAYESQPIRQRAQDWPA--TSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAE 566 (625)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHhccCCh--hHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHH
Confidence 11111111111 011111222223344333333 3345555556677777777777777755444444433444333
Q ss_pred --HHHhhcCChHHHHHHHHhC
Q 007519 477 --NLLGRAGKIKEAEEFVLRL 495 (600)
Q Consensus 477 --~~~~~~g~~~~A~~~~~~~ 495 (600)
+.-.+..+...|...++-+
T Consensus 567 l~d~a~~~~spsqA~~~lQ~a 587 (625)
T KOG4422|consen 567 LMDSAKVSNSPSQAIEVLQLA 587 (625)
T ss_pred HHHHHHhcCCHHHHHHHHHHH
Confidence 3334555566666665554
No 35
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.67 E-value=1.3e-12 Score=119.89 Aligned_cols=427 Identities=13% Similarity=0.133 Sum_probs=320.0
Q ss_pred hHHHHHHHHHcCCChhHHHHHhhhcCC---CChhhHHHHHHHHHhcCChHHHHHHhhcCCC--CCce-eHHHHHHHHHHC
Q 007519 44 SYNAMLSGFLQNGRLSEARRLFEEMPE---RNVVSWTAMICGLADAGRVCEARKLFEEMPE--RNVV-SWNSMVVGLIRN 117 (600)
Q Consensus 44 ~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~-~~~~l~~~~~~~ 117 (600)
.|.--..--..++++..|.++|+.++. .+...|-..+.+-.++..+..|..++++... |.+. .|.-.+-+--..
T Consensus 75 ~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~L 154 (677)
T KOG1915|consen 75 VWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEML 154 (677)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHh
Confidence 344444444567888899999999987 4556777778888899999999999998776 4432 466666666778
Q ss_pred CChhHHHHHhhcCCC--CCcccHHHHHHHHHhcCCHhHHHHHHHhcc--cCCchhHHHHHHHHHhcCChhHHHHHHccCC
Q 007519 118 GELNEARKVFNSMPI--KNVISWNAMIAGYVECCMMGEAIVLFEEME--ERNVVTWTSMISGYCRAGEVEEGYCLFRRMP 193 (600)
Q Consensus 118 ~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 193 (600)
|++..|.++|++..+ |+...+.+.++.-.+-..++.|..+++... .|++.+|......-.+.|+...|..+|+...
T Consensus 155 gNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAi 234 (677)
T KOG1915|consen 155 GNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAI 234 (677)
T ss_pred cccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 999999999999886 999999999999999999999999999876 7999999999999999999999999998776
Q ss_pred C---C---CcchHHHHHHHHHhcCChhHHHHHHHHHHhhhcCCCCCC--hhhHHHHHHHHHhcCChhhHHHH---hcccC
Q 007519 194 R---K---NVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCN--VQSCNSMINGYIRFGRLEEAQNL---FDTVP 262 (600)
Q Consensus 194 ~---~---~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~---~~~~~ 262 (600)
+ . +...+.++...-.++..++.|.-+|+-.+.. ++-+ ...|......--+.|+....... -+.+.
T Consensus 235 e~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~----~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~q 310 (677)
T KOG1915|consen 235 EFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDH----IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQ 310 (677)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhH
Confidence 4 1 2234555555556778899999999998875 2222 33444444444455664443332 22222
Q ss_pred --------CCCchhHHHHHHHHHhcCChHHHHHHHhhCCC--CCh---hhHHHHHH--------HHHhCCChhHHHHHHH
Q 007519 263 --------VRDEISWTSMIDGYLSVGQVSNAYYLFHNMPD--RDA---VAWTAMIS--------GLVQNELFVEATYLFM 321 (600)
Q Consensus 263 --------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~---~~~~~li~--------~~~~~g~~~~a~~~~~ 321 (600)
+.|..+|-..+..-...|+.+...++|++... |.. ..|...|. .-....+.+.+.++|+
T Consensus 311 YE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq 390 (677)
T KOG1915|consen 311 YEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQ 390 (677)
T ss_pred HHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 44666777788888888999999999998765 211 12222221 1235788999999999
Q ss_pred HHHHCCCCCChhHHHHHHHHH----hcccchhhhHHHHHHHhhhcCCCchhHHHHHHHHHHhcCChHHHHHHHhcCC---
Q 007519 322 EMRAHGVPPLNATFSVLFGAA----GATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMV--- 394 (600)
Q Consensus 322 ~m~~~g~~p~~~~~~~l~~~~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--- 394 (600)
..++. ++....||..+--.| .+..++..|.+++..+. |..|...++...|..-.+.++++.+..++++..
T Consensus 391 ~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~ 467 (677)
T KOG1915|consen 391 ACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS 467 (677)
T ss_pred HHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 99884 566667877655544 46778999999998665 567788889999999999999999999999876
Q ss_pred CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCChhHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCCCcchHH
Q 007519 395 SRDLVSWNSMVMGFSHHGLANETLKVFESMLESG-THPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYV 473 (600)
Q Consensus 395 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~ 473 (600)
+.|..+|......-...|+.+.|..+|.-..+.. +......|...|+--...|.++.|..+++++.+. .+...+|-
T Consensus 468 Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r---t~h~kvWi 544 (677)
T KOG1915|consen 468 PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR---TQHVKVWI 544 (677)
T ss_pred hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh---cccchHHH
Confidence 5577889999888889999999999999988642 1223355666666667899999999999999976 45555776
Q ss_pred HHHHHHh
Q 007519 474 SMINLLG 480 (600)
Q Consensus 474 ~l~~~~~ 480 (600)
+.+..-.
T Consensus 545 sFA~fe~ 551 (677)
T KOG1915|consen 545 SFAKFEA 551 (677)
T ss_pred hHHHHhc
Confidence 6665433
No 36
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.66 E-value=2.5e-16 Score=147.07 Aligned_cols=254 Identities=19% Similarity=0.184 Sum_probs=111.8
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHH-HHHHHhcccchhhhHHHHHHHhhhcCCCchhHHHHHHHHHHhcC
Q 007519 303 MISGLVQNELFVEATYLFMEMRAHGVPPLNATFSV-LFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCG 381 (600)
Q Consensus 303 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 381 (600)
+...+.+.|++++|++++++......+|+...|-. +...+...++.+.|...++.+.+.+.. ++..+..++.. ...+
T Consensus 14 ~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 14 LARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-cccc
Confidence 35556677777777777765544432344444433 334555667777777777777665544 45556666666 6889
Q ss_pred ChHHHHHHHhcCC--CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCChhHHHHHHHHhcccCchHHHHHHHHH
Q 007519 382 VIDNAYNIFSNMV--SRDLVSWNSMVMGFSHHGLANETLKVFESMLESG-THPNSVTFLGILSACSHAGLVSRGWELFNA 458 (600)
Q Consensus 382 ~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 458 (600)
++++|.+++.... .++...+..++..+...++++++.++++.+.... .+++...|..+...+.+.|+.++|.+.+++
T Consensus 92 ~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~ 171 (280)
T PF13429_consen 92 DPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRK 171 (280)
T ss_dssp --------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred cccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999998887764 4566778888888999999999999999987543 245666777788889999999999999999
Q ss_pred HHhhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCC
Q 007519 459 MFDVYKIQP-GPEHYVSMINLLGRAGKIKEAEEFVLRLP--FEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLN 535 (600)
Q Consensus 459 ~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~ 535 (600)
+.+. .| +......++..+...|+.+++.++++... .+.++..+..+..++. ..|+.++|+..++++.+..|+|
T Consensus 172 al~~---~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~-~lg~~~~Al~~~~~~~~~~p~d 247 (280)
T PF13429_consen 172 ALEL---DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYL-QLGRYEEALEYLEKALKLNPDD 247 (280)
T ss_dssp HHHH----TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHH-HHT-HHHHHHHHHHHHHHSTT-
T ss_pred HHHc---CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhc-cccccccccccccccccccccc
Confidence 9975 67 57789999999999999999888887764 2345556777888888 9999999999999999999999
Q ss_pred CCcHHHHhHHHHhhCCcHHHHHHHHHH
Q 007519 536 APAHVVLCNIYAASGRHVEEHKLRMDM 562 (600)
Q Consensus 536 ~~~~~~l~~~~~~~g~~~~A~~~~~~~ 562 (600)
+.+...++.++...|+.++|.+++...
T Consensus 248 ~~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 248 PLWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp HHHHHHHHHHHT---------------
T ss_pred ccccccccccccccccccccccccccc
Confidence 999999999999999999999977654
No 37
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.63 E-value=6.5e-13 Score=122.30 Aligned_cols=213 Identities=14% Similarity=0.091 Sum_probs=170.6
Q ss_pred hcccchhhhHHHHHHHhhhcCCCchhHHHHHHHHHHhcCChHHHHHHHhcCC---CCChhhHHHHHHHHHhcCChHHHHH
Q 007519 343 GATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMV---SRDLVSWNSMVMGFSHHGLANETLK 419 (600)
Q Consensus 343 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~ 419 (600)
.-.|+.-.+..-++...+....++. .|--+..+|....+.++-...|+... +.|+.+|..-.+.+.-.+++++|..
T Consensus 337 fL~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~a 415 (606)
T KOG0547|consen 337 FLKGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIA 415 (606)
T ss_pred hhcCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHH
Confidence 4467788888888888777655433 25566778899999999999998876 5678889888888888999999999
Q ss_pred HHHHHHHcCCCCC-hhHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhCC-C
Q 007519 420 VFESMLESGTHPN-SVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLP-F 497 (600)
Q Consensus 420 ~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~ 497 (600)
=|++..+. .|+ ...|..+.-+..+.+.++++...|++.+++ ++--+.+|+..+..+..++++++|.+.|+... +
T Consensus 416 DF~Kai~L--~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk--FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L 491 (606)
T KOG0547|consen 416 DFQKAISL--DPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK--FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL 491 (606)
T ss_pred HHHHHhhc--ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh
Confidence 99999874 554 456666666667889999999999999985 43358899999999999999999999998863 4
Q ss_pred CCC-------H-HHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCCCcHHHHhHHHHhhCCcHHHHHHHHH
Q 007519 498 EPD-------H-RIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMD 561 (600)
Q Consensus 498 ~p~-------~-~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 561 (600)
.|+ . ...+-.+-.+.|+ +|+..|+.++.++++++|....+|..|+..-.+.|+.++|+++++.
T Consensus 492 E~~~~~~~v~~~plV~Ka~l~~qwk-~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEk 562 (606)
T KOG0547|consen 492 EPREHLIIVNAAPLVHKALLVLQWK-EDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEK 562 (606)
T ss_pred ccccccccccchhhhhhhHhhhchh-hhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 454 1 1222233334434 8999999999999999999999999999999999999999998864
No 38
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=2.3e-12 Score=118.04 Aligned_cols=327 Identities=14% Similarity=0.067 Sum_probs=242.0
Q ss_pred CCCCChhhHHHHHHHHHhcCChhhHHHHhcccCCCCchhHHHHHHHHHhcCChHHHHHHHhhCCCCChhhH-HHHHHHHH
Q 007519 230 GNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAW-TAMISGLV 308 (600)
Q Consensus 230 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~li~~~~ 308 (600)
+...|...+-.....+.+.|..+.|+..|......-|..|.+.+....-..+.+.+..+...+...+...- -.+..++.
T Consensus 159 ~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~ 238 (559)
T KOG1155|consen 159 GGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQ 238 (559)
T ss_pred cccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHH
Confidence 44455555545555666788899999988888766667777766655555555555555444443222221 22345666
Q ss_pred hCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhcccchhhhHHHHHHHhhhcC--CCchhHHHHHHHHHHhcCChHHH
Q 007519 309 QNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTES--ESDLILENCLISMYAKCGVIDNA 386 (600)
Q Consensus 309 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A 386 (600)
.....+++++-.+.....|.+.+...-+....+.....++++|..+|+++.+..+ -.|..+|+.++-.-..+.++.--
T Consensus 239 el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~L 318 (559)
T KOG1155|consen 239 ELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYL 318 (559)
T ss_pred HHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHH
Confidence 6678888999888888888766666555555666788899999999999988743 12566777666443332222221
Q ss_pred HHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh-hHHHHHHHHhcccCchHHHHHHHHHHHhhcCC
Q 007519 387 YNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNS-VTFLGILSACSHAGLVSRGWELFNAMFDVYKI 465 (600)
Q Consensus 387 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 465 (600)
....-.+-+--+.|..++.+-|.-.++.++|...|++..+. .|.. ..|..+..-|....+...|.+.++++++ +
T Consensus 319 A~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkL--Np~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd---i 393 (559)
T KOG1155|consen 319 AQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKL--NPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVD---I 393 (559)
T ss_pred HHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhc--CcchhHHHHHhhHHHHHhcccHHHHHHHHHHHh---c
Confidence 12222223445567778888999999999999999999874 5655 4455555778999999999999999984 5
Q ss_pred CC-CcchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCCCcHHHH
Q 007519 466 QP-GPEHYVSMINLLGRAGKIKEAEEFVLRLP-FEP-DHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVL 542 (600)
Q Consensus 466 ~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 542 (600)
.| |-..|..|+.+|.-.+.+.-|+-+|++.. .+| |...|..+...|. +.++.++|++.|++++...--+..++..|
T Consensus 394 ~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~-kl~~~~eAiKCykrai~~~dte~~~l~~L 472 (559)
T KOG1155|consen 394 NPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYE-KLNRLEEAIKCYKRAILLGDTEGSALVRL 472 (559)
T ss_pred CchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHH-HhccHHHHHHHHHHHHhccccchHHHHHH
Confidence 77 78899999999999999999999999975 566 6778888888888 99999999999999999877688999999
Q ss_pred hHHHHhhCCcHHHHHHHHHH
Q 007519 543 CNIYAASGRHVEEHKLRMDM 562 (600)
Q Consensus 543 ~~~~~~~g~~~~A~~~~~~~ 562 (600)
+.+|-+.++..+|...++.-
T Consensus 473 akLye~l~d~~eAa~~yek~ 492 (559)
T KOG1155|consen 473 AKLYEELKDLNEAAQYYEKY 492 (559)
T ss_pred HHHHHHHHhHHHHHHHHHHH
Confidence 99999999999999965443
No 39
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=4.8e-11 Score=109.52 Aligned_cols=310 Identities=11% Similarity=0.063 Sum_probs=128.9
Q ss_pred HHHHhcCCHhHHHHHHHhcccCCchhHHHHHHHHHhcCChhHHHHHHccCCCCCcchH-HHHHHHHHhcCChhHHHHHHH
Q 007519 143 AGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSW-TAMIGGFAWNGFHKESLLLFI 221 (600)
Q Consensus 143 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~li~~~~~~~~~~~a~~~~~ 221 (600)
-.+.+.|..+.|++.|......-+..|.+.+....-.-+.+.+..+...+...+...- --+..++......+++++-..
T Consensus 172 vv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~el~q~~e~~~k~e 251 (559)
T KOG1155|consen 172 VVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQELHQHEEALQKKE 251 (559)
T ss_pred HHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555666655555544444444444443333344444333333332211111 112223333344455554444
Q ss_pred HHHhhhcCCCCCChhhHHHHHHHHHhcCChhhHHHHhcccCCCCc------hhHHHHHHHHHhcCChH-HHHHHHhhCCC
Q 007519 222 EMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDE------ISWTSMIDGYLSVGQVS-NAYYLFHNMPD 294 (600)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~-~A~~~~~~~~~ 294 (600)
..... |++.+...-+....+.-...++|+|+.+|+++.+.|+ .+|+.++-.-....++. -|..++ .+.+
T Consensus 252 ~l~~~---gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~-~idK 327 (559)
T KOG1155|consen 252 RLSSV---GFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVS-NIDK 327 (559)
T ss_pred HHHhc---cCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHH-Hhcc
Confidence 44432 4444444333344444455666666666666653332 23333322111111111 011111 1111
Q ss_pred CChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCh-hHHHHHHHHHhcccchhhhHHHHHHHhhhcCCCchhHHHHH
Q 007519 295 RDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLN-ATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCL 373 (600)
Q Consensus 295 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 373 (600)
=-+.|.-++.+.|.-.++.++|...|++.++. .|.. ..++.+.+-|....+...|.+-++.+.+-... |-..|-.|
T Consensus 328 yR~ETCCiIaNYYSlr~eHEKAv~YFkRALkL--Np~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~-DyRAWYGL 404 (559)
T KOG1155|consen 328 YRPETCCIIANYYSLRSEHEKAVMYFKRALKL--NPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPR-DYRAWYGL 404 (559)
T ss_pred CCccceeeehhHHHHHHhHHHHHHHHHHHHhc--CcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCch-hHHHHhhh
Confidence 12233444444445555555555555555543 2222 22333333444444444444444444433221 33344444
Q ss_pred HHHHHhcCChHHHHHHHhcCC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccCchH
Q 007519 374 ISMYAKCGVIDNAYNIFSNMV---SRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVS 450 (600)
Q Consensus 374 ~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~ 450 (600)
.++|.-.+...=|+-.|++.. +.|...|.+|..+|.+.++.++|++.|......| ..+...+..+.+.|-+.++.+
T Consensus 405 GQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~~~l~~LakLye~l~d~~ 483 (559)
T KOG1155|consen 405 GQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTEGSALVRLAKLYEELKDLN 483 (559)
T ss_pred hHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHHHHhHH
Confidence 444444444444444444432 3344444444444444444444444444444433 223344444444444444444
Q ss_pred HHHHHHHHHH
Q 007519 451 RGWELFNAMF 460 (600)
Q Consensus 451 ~a~~~~~~~~ 460 (600)
+|...|++..
T Consensus 484 eAa~~yek~v 493 (559)
T KOG1155|consen 484 EAAQYYEKYV 493 (559)
T ss_pred HHHHHHHHHH
Confidence 4444444443
No 40
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.56 E-value=8.6e-12 Score=121.95 Aligned_cols=281 Identities=10% Similarity=-0.022 Sum_probs=153.3
Q ss_pred cCChhHHHHHHHHHHhhhcCCCCCChhh-HHHHHHHHHhcCChhhHHHHhcccCC--CCchhHH--HHHHHHHhcCChHH
Q 007519 210 NGFHKESLLLFIEMKGICDNGNNCNVQS-CNSMINGYIRFGRLEEAQNLFDTVPV--RDEISWT--SMIDGYLSVGQVSN 284 (600)
Q Consensus 210 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~--~l~~~~~~~~~~~~ 284 (600)
.|+++.|.+.+....+. .+++.. |.....+..+.|+++.|...+.++.. ++..... .....+...|++++
T Consensus 97 eGd~~~A~k~l~~~~~~-----~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~ 171 (398)
T PRK10747 97 EGDYQQVEKLMTRNADH-----AEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHA 171 (398)
T ss_pred CCCHHHHHHHHHHHHhc-----ccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHH
Confidence 46666666555554321 112222 22222333556666666666666552 2221111 22344555555555
Q ss_pred HHHHHhhCCC---CChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhcccchhhhHHHHHHHhhh
Q 007519 285 AYYLFHNMPD---RDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKT 361 (600)
Q Consensus 285 A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 361 (600)
|...++.+.+ .+......+...|.+.|++++|.+++..+.+.+..++ .....+-
T Consensus 172 Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~-~~~~~l~---------------------- 228 (398)
T PRK10747 172 ARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDE-EHRAMLE---------------------- 228 (398)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCH-HHHHHHH----------------------
Confidence 5555555443 2334445555555555555555555555555432211 1110000
Q ss_pred cCCCchhHHHHHHHHHHhcCChHHHHHHHhcCC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHH
Q 007519 362 ESESDLILENCLISMYAKCGVIDNAYNIFSNMV---SRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLG 438 (600)
Q Consensus 362 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ 438 (600)
...|..++.......+.+...++++.+. +.++.....+...+...|+.++|.+++++..+. +|+....
T Consensus 229 -----~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~-- 299 (398)
T PRK10747 229 -----QQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV-- 299 (398)
T ss_pred -----HHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--
Confidence 0111222222333344555566666654 446666777777777778888888777777662 4444221
Q ss_pred HHHHhcccCchHHHHHHHHHHHhhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHhCC-CCCCHHHHHHHHHHHhhhhC
Q 007519 439 ILSACSHAGLVSRGWELFNAMFDVYKIQP-GPEHYVSMINLLGRAGKIKEAEEFVLRLP-FEPDHRIWGALLGACGFCEG 516 (600)
Q Consensus 439 l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l~~~~~~~~g 516 (600)
++.+....++.+++.+..+...+. .| |+..+.+++..+.+.|++++|.+.|++.. ..|+...+..+...+. +.|
T Consensus 300 ~l~~~l~~~~~~~al~~~e~~lk~---~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~-~~g 375 (398)
T PRK10747 300 LLIPRLKTNNPEQLEKVLRQQIKQ---HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALD-RLH 375 (398)
T ss_pred HHHhhccCCChHHHHHHHHHHHhh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHH-HcC
Confidence 233334457777777777777654 44 45566677777777777777777777754 5677777666666666 777
Q ss_pred CHHHHHHHHHHHHhh
Q 007519 517 NAEIAEHAAKRLLEL 531 (600)
Q Consensus 517 ~~~~a~~~~~~~~~~ 531 (600)
+.++|..++++.+.+
T Consensus 376 ~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 376 KPEEAAAMRRDGLML 390 (398)
T ss_pred CHHHHHHHHHHHHhh
Confidence 777777777777654
No 41
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.55 E-value=6.8e-13 Score=127.22 Aligned_cols=276 Identities=12% Similarity=0.024 Sum_probs=208.9
Q ss_pred CChHHHHHHHhhCCC--CCh-hhHHHHHHHHHhCCChhHHHHHHHHHHHCC--CCCChhHHHHHHHHHhcccchhhhHHH
Q 007519 280 GQVSNAYYLFHNMPD--RDA-VAWTAMISGLVQNELFVEATYLFMEMRAHG--VPPLNATFSVLFGAAGATANIDLGRQI 354 (600)
Q Consensus 280 ~~~~~A~~~~~~~~~--~~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~g--~~p~~~~~~~l~~~~~~~~~~~~a~~~ 354 (600)
-+..+|+..|..+.. +|+ .....+..+|...+++++|.++|+.+.+.. ..-+..+|.+.+-.+-+ +-+..+
T Consensus 333 y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~ 408 (638)
T KOG1126|consen 333 YNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSY 408 (638)
T ss_pred HHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHH
Confidence 356778888888554 333 455667888999999999999999988752 11234566666544322 112222
Q ss_pred HHHHhhhcCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCC---ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 007519 355 HCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSR---DLVSWNSMVMGFSHHGLANETLKVFESMLESGTHP 431 (600)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p 431 (600)
+..-.-.--+..+.+|.++.++|.-+++.+.|++.|++...- ...+|+.+..-+.....+|.|...|+.... +.|
T Consensus 409 Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~--~~~ 486 (638)
T KOG1126|consen 409 LAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG--VDP 486 (638)
T ss_pred HHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc--CCc
Confidence 221111123447889999999999999999999999998843 456788888888889999999999998863 344
Q ss_pred Ch-hHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHH
Q 007519 432 NS-VTFLGILSACSHAGLVSRGWELFNAMFDVYKIQP-GPEHYVSMINLLGRAGKIKEAEEFVLRLP-FEP-DHRIWGAL 507 (600)
Q Consensus 432 ~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l 507 (600)
.. ..|-.+...|.+.++++.|.-.|+++. .+.| +......++..+.+.|+.++|+++++++. .+| ++..--..
T Consensus 487 rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~---~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~ 563 (638)
T KOG1126|consen 487 RHYNAWYGLGTVYLKQEKLEFAEFHFQKAV---EINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHR 563 (638)
T ss_pred hhhHHHHhhhhheeccchhhHHHHHHHhhh---cCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHH
Confidence 33 455566788999999999999999987 5688 67788889999999999999999999975 444 34443344
Q ss_pred HHHHhhhhCCHHHHHHHHHHHHhhCCCCCCcHHHHhHHHHhhCCcHHHHHHHHHHhhc
Q 007519 508 LGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLK 565 (600)
Q Consensus 508 ~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 565 (600)
+..+. ..+++++|++.++++.++-|++...+..++.+|.+.|+.+.|..=+..+.+-
T Consensus 564 ~~il~-~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~l 620 (638)
T KOG1126|consen 564 ASILF-SLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDL 620 (638)
T ss_pred HHHHH-hhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcC
Confidence 44555 7899999999999999999999999999999999999999999866555443
No 42
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=3e-11 Score=113.71 Aligned_cols=467 Identities=10% Similarity=0.008 Sum_probs=275.8
Q ss_pred hHHHHHHHHHhcCChHHHHHHhhcCCC--CCceeHHHHHHHHHHCCChhHHHHHhhcCC--CCCcccHHHHHHHHHhcCC
Q 007519 75 SWTAMICGLADAGRVCEARKLFEEMPE--RNVVSWNSMVVGLIRNGELNEARKVFNSMP--IKNVISWNAMIAGYVECCM 150 (600)
Q Consensus 75 ~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--~~~~~~~~~l~~~~~~~~~ 150 (600)
-+..+.+-+..+.++.-|.-+-+++.. .|+..-.-+++++.-.|+++.|..++..-. ..|..+......++.+..+
T Consensus 18 ~~~~~~r~~l~q~~y~~a~f~adkV~~l~~dp~d~~~~aq~l~~~~~y~ra~~lit~~~le~~d~~cryL~~~~l~~lk~ 97 (611)
T KOG1173|consen 18 KYRRLVRDALMQHRYKTALFWADKVAGLTNDPADIYWLAQVLYLGRQYERAAHLITTYKLEKRDIACRYLAAKCLVKLKE 97 (611)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHhccCChHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHH
Confidence 344555555556666666666555543 445555556677777777777766665543 2566666666666677777
Q ss_pred HhHHHHHHHhccc-CCchhHHHHHHHHHhcCChhHHHHHHccCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhhhcC
Q 007519 151 MGEAIVLFEEMEE-RNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDN 229 (600)
Q Consensus 151 ~~~A~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~ 229 (600)
+++|..++..... -++..|-.-- + ...-..+.+.+... ..-....+-.-...|....+.++|...+++...
T Consensus 98 ~~~al~vl~~~~~~~~~f~yy~~~-~-~~~l~~n~~~~~~~--~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~---- 169 (611)
T KOG1173|consen 98 WDQALLVLGRGHVETNPFSYYEKD-A-ANTLELNSAGEDLM--INLESSICYLRGKVYVALDNREEARDKYKEALL---- 169 (611)
T ss_pred HHHHHHHhcccchhhcchhhcchh-h-hceeccCccccccc--ccchhceeeeeeehhhhhccHHHHHHHHHHHHh----
Confidence 7777776664310 0111110000 0 00000111110000 000000111111234445566777777776653
Q ss_pred CCCCChhhHHHHHHHHHhc-CChhhHHHHhcccC-----CCCchhHHHHHHHHHhcCChHHHHHHH--hhCC--CCChhh
Q 007519 230 GNNCNVQSCNSMINGYIRF-GRLEEAQNLFDTVP-----VRDEISWTSMIDGYLSVGQVSNAYYLF--HNMP--DRDAVA 299 (600)
Q Consensus 230 ~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~A~~~~--~~~~--~~~~~~ 299 (600)
.|...+..+...-... =..++-..+++... ..+......+.........-+.....- ..+. ..++..
T Consensus 170 ---~D~~c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dl 246 (611)
T KOG1173|consen 170 ---ADAKCFEAFEKLVSAHMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDL 246 (611)
T ss_pred ---cchhhHHHHHHHHHHHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHH
Confidence 3444443332211110 01112233333211 111111111111110000000000000 0000 124444
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhcccchhhhHHHHHHHhhhcCCCchhHHHHHHHHHHh
Q 007519 300 WTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAK 379 (600)
Q Consensus 300 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 379 (600)
......-+...+++.+..++.+...+.. ++....+..-|.++...|+...-..+-..+.+. .+..+.+|-++.-.|.-
T Consensus 247 l~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YYl~ 324 (611)
T KOG1173|consen 247 LAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYYLM 324 (611)
T ss_pred HHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHHHHH
Confidence 5555666777888889999888887763 556666666666777777766655554455544 34467778888888888
Q ss_pred cCChHHHHHHHhcCCCCC---hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccCchHHHHHHH
Q 007519 380 CGVIDNAYNIFSNMVSRD---LVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELF 456 (600)
Q Consensus 380 ~~~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 456 (600)
.|+..+|++.|.+...-| ...|-.+...|+-.|..++|+..+...-+. ++-....+.-+..-|.+.++...|.++|
T Consensus 325 i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLAe~Ff 403 (611)
T KOG1173|consen 325 IGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLAEKFF 403 (611)
T ss_pred hcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHHHHHH
Confidence 899999999998876333 467888899999999999999988887764 2323333444555677889999999999
Q ss_pred HHHHhhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHhCC-----C---CC-CHHHHHHHHHHHhhhhCCHHHHHHHHH
Q 007519 457 NAMFDVYKIQP-GPEHYVSMINLLGRAGKIKEAEEFVLRLP-----F---EP-DHRIWGALLGACGFCEGNAEIAEHAAK 526 (600)
Q Consensus 457 ~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~---~p-~~~~~~~l~~~~~~~~g~~~~a~~~~~ 526 (600)
..+. ++.| |+.+++-++-.....+.+.+|..+|+... . .+ -.++++.+.-++. +.+.+++|+..++
T Consensus 404 ~~A~---ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~R-kl~~~~eAI~~~q 479 (611)
T KOG1173|consen 404 KQAL---AIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYR-KLNKYEEAIDYYQ 479 (611)
T ss_pred HHHH---hcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHH-HHhhHHHHHHHHH
Confidence 8886 5677 68888888888888899999998887753 1 11 2345777888888 9999999999999
Q ss_pred HHHhhCCCCCCcHHHHhHHHHhhCCcHHHHHHH
Q 007519 527 RLLELDPLNAPAHVVLCNIYAASGRHVEEHKLR 559 (600)
Q Consensus 527 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 559 (600)
+++.+.|.++.+|..++.+|...|+++.|.+.+
T Consensus 480 ~aL~l~~k~~~~~asig~iy~llgnld~Aid~f 512 (611)
T KOG1173|consen 480 KALLLSPKDASTHASIGYIYHLLGNLDKAIDHF 512 (611)
T ss_pred HHHHcCCCchhHHHHHHHHHHHhcChHHHHHHH
Confidence 999999999999999999999999999999844
No 43
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.55 E-value=5.5e-12 Score=123.29 Aligned_cols=272 Identities=13% Similarity=0.107 Sum_probs=170.7
Q ss_pred hcCChhHHHHHHccCCCC--Ccc-hHHHHHHHHHhcCChhHHHHHHHHHHhhhcCCCCCChhhHH--HHHHHHHhcCChh
Q 007519 178 RAGEVEEGYCLFRRMPRK--NVV-SWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCN--SMINGYIRFGRLE 252 (600)
Q Consensus 178 ~~g~~~~A~~~~~~~~~~--~~~-~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~ 252 (600)
-.|+++.|++.+....+. ++. .|.....+..+.|+++.|.+.+.++.+. .|+...+. .....+...|+++
T Consensus 96 ~eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~-----~~~~~~~~~l~~a~l~l~~g~~~ 170 (398)
T PRK10747 96 AEGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL-----ADNDQLPVEITRVRIQLARNENH 170 (398)
T ss_pred hCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-----CCcchHHHHHHHHHHHHHCCCHH
Confidence 369999999999877653 233 3333345558999999999999999864 66665443 3356888999999
Q ss_pred hHHHHhcccC---CCCchhHHHHHHHHHhcCChHHHHHHHhhCCCCCh---h--------hHHHHHHHHHhCCChhHHHH
Q 007519 253 EAQNLFDTVP---VRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDA---V--------AWTAMISGLVQNELFVEATY 318 (600)
Q Consensus 253 ~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~--------~~~~li~~~~~~g~~~~a~~ 318 (600)
.|...++.+. +.++.+...+...|.+.|++++|..++..+.+... . +|..++.......+.+...+
T Consensus 171 ~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~ 250 (398)
T PRK10747 171 AARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKR 250 (398)
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 9999998887 56778889999999999999999999988876221 1 22222222223333333344
Q ss_pred HHHHHHHCCCCCChhHHHHHHHHHhcccchhhhHHHHHHHhhhcCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCCh
Q 007519 319 LFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDL 398 (600)
Q Consensus 319 ~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 398 (600)
+++.+.+. .+ .++.....+...+...|+.++|...+++..+...
T Consensus 251 ~w~~lp~~-~~-----------------------------------~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~ 294 (398)
T PRK10747 251 WWKNQSRK-TR-----------------------------------HQVALQVAMAEHLIECDDHDTAQQIILDGLKRQY 294 (398)
T ss_pred HHHhCCHH-Hh-----------------------------------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 44433221 12 2344444555555556666666555555442111
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh-hHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCCCcchHHHHHH
Q 007519 399 VSWNSMVMGFSHHGLANETLKVFESMLESGTHPNS-VTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMIN 477 (600)
Q Consensus 399 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 477 (600)
..--.++.+....++.+++++.++...+. .|+. ..+..+...|.+.|++++|.+.|+.+.+ ..|+...+..+..
T Consensus 295 ~~~l~~l~~~l~~~~~~~al~~~e~~lk~--~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~---~~P~~~~~~~La~ 369 (398)
T PRK10747 295 DERLVLLIPRLKTNNPEQLEKVLRQQIKQ--HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALK---QRPDAYDYAWLAD 369 (398)
T ss_pred CHHHHHHHhhccCCChHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCHHHHHHHHH
Confidence 11112233333446666666666666654 3333 3455556666677777777777776664 3566666666777
Q ss_pred HHhhcCChHHHHHHHHhC
Q 007519 478 LLGRAGKIKEAEEFVLRL 495 (600)
Q Consensus 478 ~~~~~g~~~~A~~~~~~~ 495 (600)
++.+.|+.++|.+++++.
T Consensus 370 ~~~~~g~~~~A~~~~~~~ 387 (398)
T PRK10747 370 ALDRLHKPEEAAAMRRDG 387 (398)
T ss_pred HHHHcCCHHHHHHHHHHH
Confidence 777777777777666553
No 44
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.53 E-value=8.4e-13 Score=126.58 Aligned_cols=249 Identities=14% Similarity=0.092 Sum_probs=195.7
Q ss_pred CChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhcccchhhhHHHHHHHhhhcC--CCchhHHHHHHHHHHhcCChHHHHH
Q 007519 311 ELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTES--ESDLILENCLISMYAKCGVIDNAYN 388 (600)
Q Consensus 311 g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~ 388 (600)
-++.+|+..|.....+ +.-+......+..+|...++.+++..+|+.+.+... --+..+|.+.+-.+-+.=.+.---+
T Consensus 333 y~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq 411 (638)
T KOG1126|consen 333 YNCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQ 411 (638)
T ss_pred HHHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHH
Confidence 4578999999995554 445557778888899999999999999998877542 2266777777654433222211111
Q ss_pred HHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-ChhHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCC
Q 007519 389 IFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHP-NSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQP 467 (600)
Q Consensus 389 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p 467 (600)
-+-.+-+..+.+|-++.++|.-+++.+.|++.|++..+ +.| ...+|..+..-+.....+|.|...|+.++ ++.|
T Consensus 412 ~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ--ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al---~~~~ 486 (638)
T KOG1126|consen 412 DLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQ--LDPRFAYAYTLLGHESIATEEFDKAMKSFRKAL---GVDP 486 (638)
T ss_pred HHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhc--cCCccchhhhhcCChhhhhHHHHhHHHHHHhhh---cCCc
Confidence 22222356788999999999999999999999999987 466 55777777777788899999999999887 3445
Q ss_pred -CcchHHHHHHHHhhcCChHHHHHHHHhCC-CCCCHHHHHHHH-HHHhhhhCCHHHHHHHHHHHHhhCCCCCCcHHHHhH
Q 007519 468 -GPEHYVSMINLLGRAGKIKEAEEFVLRLP-FEPDHRIWGALL-GACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCN 544 (600)
Q Consensus 468 -~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l~-~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 544 (600)
+-..|.-|+-.|.+.++++.|+-.|+++. +.|...+...-+ ..+. +.|+.++|++++++++.++|.|+..-..-+.
T Consensus 487 rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~-~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~ 565 (638)
T KOG1126|consen 487 RHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQH-QLKRKDKALQLYEKAIHLDPKNPLCKYHRAS 565 (638)
T ss_pred hhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHH-HhhhhhHHHHHHHHHHhcCCCCchhHHHHHH
Confidence 24455567889999999999999999975 788776655444 4556 8999999999999999999999999999999
Q ss_pred HHHhhCCcHHHHHHHHHHhhcC
Q 007519 545 IYAASGRHVEEHKLRMDMGLKG 566 (600)
Q Consensus 545 ~~~~~g~~~~A~~~~~~~~~~~ 566 (600)
++...+++++|...++++++--
T Consensus 566 il~~~~~~~eal~~LEeLk~~v 587 (638)
T KOG1126|consen 566 ILFSLGRYVEALQELEELKELV 587 (638)
T ss_pred HHHhhcchHHHHHHHHHHHHhC
Confidence 9999999999999999998643
No 45
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.53 E-value=3e-10 Score=103.32 Aligned_cols=422 Identities=13% Similarity=0.133 Sum_probs=251.2
Q ss_pred CCCccchhHHHHHHHhcCChhhHHHHhccCCCCC----cchHHHHHH--HHHcCCChhHH-HHHhhhcCC---CChhhHH
Q 007519 8 KSLVVHLTSSITKYSKRGFIDEAKALFQLMPQRN----VVSYNAMLS--GFLQNGRLSEA-RRLFEEMPE---RNVVSWT 77 (600)
Q Consensus 8 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~l~~--~~~~~~~~~~A-~~~~~~~~~---~~~~~~~ 77 (600)
|.++.+-+.|++. ...|.+.++--+|+.|.+.+ ...-..|++ .|.++.++.-| ++.|-.|.+ .+..+|
T Consensus 113 ~~~V~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sW- 190 (625)
T KOG4422|consen 113 PLQVETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSW- 190 (625)
T ss_pred chhhcchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccccccccc-
Confidence 3445556666654 45688889999999998632 233444443 34444444433 444444543 222232
Q ss_pred HHHHHHHhcCChHHHHHHhhcCCCCCceeHHHHHHHHHHCCChhHHHHHhhcCCC----CCcccHHHHHHHHHhcCCHhH
Q 007519 78 AMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPI----KNVISWNAMIAGYVECCMMGE 153 (600)
Q Consensus 78 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~ 153 (600)
+.|.+.+ ++-+.......++..+|.++++-...+.|.+++++... .+..+||.+|.+-.-..+
T Consensus 191 -------K~G~vAd---L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~--- 257 (625)
T KOG4422|consen 191 -------KSGAVAD---LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG--- 257 (625)
T ss_pred -------ccccHHH---HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc---
Confidence 3454443 44444445567888888888888888888888888765 566778888766543333
Q ss_pred HHHHHHhcc----cCCchhHHHHHHHHHhcCChhHHHHHH----ccCC----CCCcchHHHHHHHHHhcCChhH-HHHHH
Q 007519 154 AIVLFEEME----ERNVVTWTSMISGYCRAGEVEEGYCLF----RRMP----RKNVVSWTAMIGGFAWNGFHKE-SLLLF 220 (600)
Q Consensus 154 A~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~----~~~~----~~~~~~~~~li~~~~~~~~~~~-a~~~~ 220 (600)
.+++.+|. .||..|+|+++.+..+.|+++.|.+.+ .+|+ +|...+|..+|..+.+.++..+ |..++
T Consensus 258 -K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i 336 (625)
T KOG4422|consen 258 -KKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWI 336 (625)
T ss_pred -HHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHH
Confidence 55566665 588899999999888888887765544 3443 4788888888888888777644 55555
Q ss_pred HHHHhh-----hcCCCCCChhhHHHHHHHHHhcCChhhHHHHhcccC--------CC---CchhHHHHHHHHHhcCChHH
Q 007519 221 IEMKGI-----CDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVP--------VR---DEISWTSMIDGYLSVGQVSN 284 (600)
Q Consensus 221 ~~~~~~-----~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--------~~---~~~~~~~l~~~~~~~~~~~~ 284 (600)
.++... +...-+.|...|...+..|.+..+.+-|.++..-+. .+ ...-|..+....++....+.
T Consensus 337 ~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~ 416 (625)
T KOG4422|consen 337 NDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDV 416 (625)
T ss_pred HHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555543 111112245567778888888888888887766554 12 22345667777778888888
Q ss_pred HHHHHhhCCC----CChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhcccchhhhHHHHHHHhh
Q 007519 285 AYYLFHNMPD----RDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMK 360 (600)
Q Consensus 285 A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 360 (600)
-...|+.|.. |+..+...++++....|.++-.-+++..+...|..-......-++...++
T Consensus 417 ~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~---------------- 480 (625)
T KOG4422|consen 417 TLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLAR---------------- 480 (625)
T ss_pred HHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhc----------------
Confidence 8888888765 67777777888888888888888888888877644433333333332222
Q ss_pred hcCCCchhHHHHHHHHHHhc-CChHHH-HHHHhcCC--CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCCh--
Q 007519 361 TESESDLILENCLISMYAKC-GVIDNA-YNIFSNMV--SRDLVSWNSMVMGFSHHGLANETLKVFESMLESGT-HPNS-- 433 (600)
Q Consensus 361 ~~~~~~~~~~~~l~~~~~~~-~~~~~A-~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~p~~-- 433 (600)
....|+..--..+-....++ -++.++ ...-.++. .-.....+.++-.+.+.|+.++|.++|.-+...+- -|-.
T Consensus 481 ~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~ 560 (625)
T KOG4422|consen 481 DKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPL 560 (625)
T ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcc
Confidence 22222111000111111100 001111 11111111 23344556666666777777777777776644332 2222
Q ss_pred -hHHHHHHHHhcccCchHHHHHHHHHHHh
Q 007519 434 -VTFLGILSACSHAGLVSRGWELFNAMFD 461 (600)
Q Consensus 434 -~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 461 (600)
....-+++.-.+.++...|..+++-+..
T Consensus 561 lnAm~El~d~a~~~~spsqA~~~lQ~a~~ 589 (625)
T KOG4422|consen 561 LNAMAELMDSAKVSNSPSQAIEVLQLASA 589 (625)
T ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 3333455555666677777777776644
No 46
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.52 E-value=3.8e-11 Score=118.16 Aligned_cols=284 Identities=11% Similarity=-0.002 Sum_probs=159.2
Q ss_pred HhcCChhHHHHHHHHHHhhhcCCCCCChhh-HHHHHHHHHhcCChhhHHHHhcccCC--CCc--hhHHHHHHHHHhcCCh
Q 007519 208 AWNGFHKESLLLFIEMKGICDNGNNCNVQS-CNSMINGYIRFGRLEEAQNLFDTVPV--RDE--ISWTSMIDGYLSVGQV 282 (600)
Q Consensus 208 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~--~~~~~l~~~~~~~~~~ 282 (600)
...|+++.|.+.+....+. .|+... +.....+..+.|+.+.|..++....+ |+. .+.......+...|++
T Consensus 95 ~~~g~~~~A~~~l~~~~~~-----~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~ 169 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADH-----AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNEL 169 (409)
T ss_pred HhCCCHHHHHHHHHHHhhc-----CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCH
Confidence 3467777777777666543 444332 33334556666777777777766531 222 1222234555555555
Q ss_pred HHHHHHHhhCCC---CChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhcccchhhhHHHHHHHh
Q 007519 283 SNAYYLFHNMPD---RDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLM 359 (600)
Q Consensus 283 ~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 359 (600)
+.|...++.+.+ .+...+..+...+.+.|++++|.+++..+.+.++.++ ..+..+-.
T Consensus 170 ~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~-~~~~~l~~------------------- 229 (409)
T TIGR00540 170 HAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDD-EEFADLEQ------------------- 229 (409)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCH-HHHHHHHH-------------------
Confidence 555555555443 2334455555555555555555555555555542211 11100000
Q ss_pred hhcCCCchhHHHHHHHHHHhcCChHHHHHHHhcCC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHH
Q 007519 360 KTESESDLILENCLISMYAKCGVIDNAYNIFSNMV---SRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTF 436 (600)
Q Consensus 360 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~ 436 (600)
..+..++..-......+.....+.... +.+...+..+...+...|+.++|.+++++..+. .|+....
T Consensus 230 --------~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~ 299 (409)
T TIGR00540 230 --------KAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAI 299 (409)
T ss_pred --------HHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccc
Confidence 001111111111222334444454444 247777778888888888888888888888874 3444321
Q ss_pred ---HHHHHHhcccCchHHHHHHHHHHHhhcCCCC-Cc--chHHHHHHHHhhcCChHHHHHHHHh--C-CCCCCHHHHHHH
Q 007519 437 ---LGILSACSHAGLVSRGWELFNAMFDVYKIQP-GP--EHYVSMINLLGRAGKIKEAEEFVLR--L-PFEPDHRIWGAL 507 (600)
Q Consensus 437 ---~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~--~~~~~l~~~~~~~g~~~~A~~~~~~--~-~~~p~~~~~~~l 507 (600)
..........++.+.+.+.++...+. .| ++ ....+++..+.+.|++++|.+.|++ . ...|+...+..+
T Consensus 300 ~~~~l~~~~~l~~~~~~~~~~~~e~~lk~---~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~L 376 (409)
T TIGR00540 300 SLPLCLPIPRLKPEDNEKLEKLIEKQAKN---VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMA 376 (409)
T ss_pred hhHHHHHhhhcCCCChHHHHHHHHHHHHh---CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHH
Confidence 11112223346677777777777654 44 33 5566778888888888888888873 2 356777776666
Q ss_pred HHHHhhhhCCHHHHHHHHHHHHh
Q 007519 508 LGACGFCEGNAEIAEHAAKRLLE 530 (600)
Q Consensus 508 ~~~~~~~~g~~~~a~~~~~~~~~ 530 (600)
...+. +.|+.++|.+++++.+.
T Consensus 377 a~ll~-~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 377 ADAFD-QAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HHHHH-HcCCHHHHHHHHHHHHH
Confidence 66666 77888888888777655
No 47
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.51 E-value=1.3e-10 Score=114.92 Aligned_cols=230 Identities=14% Similarity=0.204 Sum_probs=160.0
Q ss_pred CCCCCCccchhHHHHHHHhcCChhhHHHHhccCCC----CCcchHHHHHHHHHcCCChhHHHHHhhhcCCCChhhHHHHH
Q 007519 5 NHPKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQ----RNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMI 80 (600)
Q Consensus 5 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~ 80 (600)
.|-.|+..||.++|..|+..|+.+.|- +|..|.- -+...|+.++.+....++.+.+. +|...+|..|.
T Consensus 19 ~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~aDtyt~Ll 90 (1088)
T KOG4318|consen 19 SGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPLADTYTNLL 90 (1088)
T ss_pred hcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCchhHHHHHH
Confidence 466788899999999999999999998 8888864 34456888888877777777665 57888999999
Q ss_pred HHHHhcCChHH---HHHHhhcCCC---------C-------------CceeHHHHHHHHHHCCChhHHHHHhhcCCC--C
Q 007519 81 CGLADAGRVCE---ARKLFEEMPE---------R-------------NVVSWNSMVVGLIRNGELNEARKVFNSMPI--K 133 (600)
Q Consensus 81 ~~~~~~g~~~~---A~~~~~~~~~---------~-------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~ 133 (600)
.+|.++||... ..+.++.+.. + ....-..++....-.|-++.+++++..++. .
T Consensus 91 ~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~Pvsa~ 170 (1088)
T KOG4318|consen 91 KAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKVPVSAW 170 (1088)
T ss_pred HHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhCCcccc
Confidence 99999998654 3332221111 0 000122344555666788888888887765 1
Q ss_pred CcccHHHHHHHHHhcCC-HhHHHHHHHhccc-CCchhHHHHHHHHHhcCChhHHHHHHccCCCCCc-----chHHHHHHH
Q 007519 134 NVISWNAMIAGYVECCM-MGEAIVLFEEMEE-RNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNV-----VSWTAMIGG 206 (600)
Q Consensus 134 ~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~li~~ 206 (600)
+. ++..+++-+..... +++-..+.....+ +++.++..+++.-.-.|+.+.|..++..|.+... ..|-.++.
T Consensus 171 ~~-p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g- 248 (1088)
T KOG4318|consen 171 NA-PFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG- 248 (1088)
T ss_pred cc-hHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc-
Confidence 11 22223444443332 3344444444444 8999999999999999999999999999987432 23333333
Q ss_pred HHhcCChhHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHhcCC
Q 007519 207 FAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGR 250 (600)
Q Consensus 207 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 250 (600)
.++...+..+++.|.+. |+.|+..|+...+-.+.++|.
T Consensus 249 ---~~~~q~~e~vlrgmqe~---gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 249 ---INAAQVFEFVLRGMQEK---GVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred ---CccchHHHHHHHHHHHh---cCCCCcchhHHHHHhhhcchh
Confidence 78888899999999987 999999999887776666444
No 48
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.51 E-value=1.7e-10 Score=106.71 Aligned_cols=399 Identities=11% Similarity=0.004 Sum_probs=248.2
Q ss_pred HHHHHHHCCChhHHHHHhhcCCC--CC-cccHHHHHHHHHhcCCHhHHHHHHHhcccCCch---hHHHHHHHHHhcCChh
Q 007519 110 MVVGLIRNGELNEARKVFNSMPI--KN-VISWNAMIAGYVECCMMGEAIVLFEEMEERNVV---TWTSMISGYCRAGEVE 183 (600)
Q Consensus 110 l~~~~~~~~~~~~a~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~ 183 (600)
..+-|.++|.+++|++.|....+ |+ +..|.....+|...|+|+++.+.-...++-++. ++..-..++-..|+++
T Consensus 121 ~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~lg~~~ 200 (606)
T KOG0547|consen 121 KGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHEQLGKFD 200 (606)
T ss_pred hhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhccHH
Confidence 34556778888888888888776 66 677777888888888888888877777764443 3334445666677777
Q ss_pred HHHHHHccCCCCCcchHHHHHHHHHhcCChhH--------HHHHHHHHHhhhcCCCCCChhhHHHHHHHHHhcCChhhHH
Q 007519 184 EGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKE--------SLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQ 255 (600)
Q Consensus 184 ~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~--------a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 255 (600)
+|+.=+ |-.++...+....-.-. |....++-...-...+-|+.....+....+...- -.
T Consensus 201 eal~D~---------tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~----~~ 267 (606)
T KOG0547|consen 201 EALFDV---------TVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADP----KP 267 (606)
T ss_pred HHHHhh---------hHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccc----cc
Confidence 765321 11222222222221111 2222222221001123344444444433332110 00
Q ss_pred HHhcccCCCCchhHHHHHHHH----Hh-cCChHHHHHHHhhCC-------CCC---------hhhHHHHHHHHHhCCChh
Q 007519 256 NLFDTVPVRDEISWTSMIDGY----LS-VGQVSNAYYLFHNMP-------DRD---------AVAWTAMISGLVQNELFV 314 (600)
Q Consensus 256 ~~~~~~~~~~~~~~~~l~~~~----~~-~~~~~~A~~~~~~~~-------~~~---------~~~~~~li~~~~~~g~~~ 314 (600)
. +..+.......+..++ .. ...+..|...+.+-. ..+ ..+.......+.-.|+.-
T Consensus 268 ~----~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~ 343 (606)
T KOG0547|consen 268 L----FDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSL 343 (606)
T ss_pred c----ccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCch
Confidence 0 0000111111111111 11 112333333332211 111 112222222345578899
Q ss_pred HHHHHHHHHHHCCCCCChhHHHHHHHHHhcccchhhhHHHHHHHhhhcCCCchhHHHHHHHHHHhcCChHHHHHHHhcCC
Q 007519 315 EATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMV 394 (600)
Q Consensus 315 ~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 394 (600)
.|..-|+..++....++. .|..+...|....+.++....|..+.+.+.+ ++.+|..-.+.+.-.+++++|..-|++.+
T Consensus 344 ~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A~aDF~Kai 421 (606)
T KOG0547|consen 344 GAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEAIADFQKAI 421 (606)
T ss_pred hhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999886433332 2666777888999999999999988887655 56677777788888899999999999887
Q ss_pred ---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCCC---
Q 007519 395 ---SRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPG--- 468 (600)
Q Consensus 395 ---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~--- 468 (600)
+.++..|-.+..+.-+.+.+++++..|++.+.. ++.-+..|+.....+...++++.|.+.|+.+++. .|+
T Consensus 422 ~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L---E~~~~~ 497 (606)
T KOG0547|consen 422 SLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL---EPREHL 497 (606)
T ss_pred hcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh---cccccc
Confidence 345566666666777889999999999999885 6666788888999999999999999999999864 443
Q ss_pred ------cchHHHHHHHHhhcCChHHHHHHHHhCC-CCCCH-HHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCC
Q 007519 469 ------PEHYVSMINLLGRAGKIKEAEEFVLRLP-FEPDH-RIWGALLGACGFCEGNAEIAEHAAKRLLELDP 533 (600)
Q Consensus 469 ------~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~-~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p 533 (600)
+.+--.++..- -.+++..|.+++++.. ..|.. ..+..+...-. .+|+.++|+++|++...+-.
T Consensus 498 ~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~l-Q~~~i~eAielFEksa~lAr 568 (606)
T KOG0547|consen 498 IIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELDPKCEQAYETLAQFEL-QRGKIDEAIELFEKSAQLAR 568 (606)
T ss_pred ccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHHHH
Confidence 22222333322 3489999999999874 66754 46777777777 89999999999999887554
No 49
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.50 E-value=1.1e-13 Score=129.29 Aligned_cols=248 Identities=16% Similarity=0.197 Sum_probs=87.6
Q ss_pred HHHHHHHhcCChhhHHHHhcccC-----CCCchhHHHHHHHHHhcCChHHHHHHHhhCCCC---ChhhHHHHHHHHHhCC
Q 007519 240 SMINGYIRFGRLEEAQNLFDTVP-----VRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDR---DAVAWTAMISGLVQNE 311 (600)
Q Consensus 240 ~l~~~~~~~~~~~~a~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g 311 (600)
.+...+.+.|++++|.++++... +.++..|..+.......++++.|...++++... +...+..++.. ...+
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccc
Confidence 34555666666666666664321 223334444444444555555555555554431 12233333333 3445
Q ss_pred ChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhcccchhhhHHHHHHHhhhcCCCchhHHHHHHHHHHhcCChHHHHHHHh
Q 007519 312 LFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFS 391 (600)
Q Consensus 312 ~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 391 (600)
++++|..++....+. . +++..+..++..+...++++++.++++
T Consensus 92 ~~~~A~~~~~~~~~~-----------------------------------~--~~~~~l~~~l~~~~~~~~~~~~~~~l~ 134 (280)
T PF13429_consen 92 DPEEALKLAEKAYER-----------------------------------D--GDPRYLLSALQLYYRLGDYDEAEELLE 134 (280)
T ss_dssp ---------------------------------------------------------------H-HHHTT-HHHHHHHHH
T ss_pred ccccccccccccccc-----------------------------------c--cccchhhHHHHHHHHHhHHHHHHHHHH
Confidence 555555544443332 1 233334455555666666666666665
Q ss_pred cCC-----CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-ChhHHHHHHHHhcccCchHHHHHHHHHHHhhcCC
Q 007519 392 NMV-----SRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHP-NSVTFLGILSACSHAGLVSRGWELFNAMFDVYKI 465 (600)
Q Consensus 392 ~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 465 (600)
.+. +++...|..+...+.+.|+.++|++.+++..+. .| |......++..+...|+.+++.++++...+. .
T Consensus 135 ~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~--~ 210 (280)
T PF13429_consen 135 KLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLKA--A 210 (280)
T ss_dssp HHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH---
T ss_pred HHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHH--C
Confidence 532 345666777777777888888888888887774 44 3556667777777888888877777777664 2
Q ss_pred CCCcchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHhhhhCCHHHHHHHHHHHHh
Q 007519 466 QPGPEHYVSMINLLGRAGKIKEAEEFVLRLP-FEP-DHRIWGALLGACGFCEGNAEIAEHAAKRLLE 530 (600)
Q Consensus 466 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~ 530 (600)
..++..+..++.+|...|+.++|...+++.. ..| |+.....+..++. ..|+.++|..+.+++++
T Consensus 211 ~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~-~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 211 PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALE-QAGRKDEALRLRRQALR 276 (280)
T ss_dssp HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT------------------
T ss_pred cCHHHHHHHHHHHhccccccccccccccccccccccccccccccccccc-ccccccccccccccccc
Confidence 3456677778888888888888888887764 344 4555556666666 78888888887777654
No 50
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.50 E-value=4e-10 Score=107.71 Aligned_cols=168 Identities=12% Similarity=0.176 Sum_probs=105.9
Q ss_pred hhHHHHHHHHHhcCChHHHHHHhhcCCC-----CCceeHHHHHHHHHHCCChhHHHHHhhcCCCCCcccHHHHHHHHHhc
Q 007519 74 VSWTAMICGLADAGRVCEARKLFEEMPE-----RNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVEC 148 (600)
Q Consensus 74 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~ 148 (600)
..|-..++.+.++|++...+.+|+..+. ....+|...+......+-++.+..++++..+.++..-...+..+++.
T Consensus 103 RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~eeyie~L~~~ 182 (835)
T KOG2047|consen 103 RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREEYIEYLAKS 182 (835)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 4666667777778888888877776654 23346777777777777777888888887776666677777777888
Q ss_pred CCHhHHHHHHHhccc----------CCchhHHHHHHHHHhcCChh---HHHHHHccCCC--CCc--chHHHHHHHHHhcC
Q 007519 149 CMMGEAIVLFEEMEE----------RNVVTWTSMISGYCRAGEVE---EGYCLFRRMPR--KNV--VSWTAMIGGFAWNG 211 (600)
Q Consensus 149 ~~~~~A~~~~~~~~~----------~~~~~~~~l~~~~~~~g~~~---~A~~~~~~~~~--~~~--~~~~~li~~~~~~~ 211 (600)
+++++|.+.+..... .+...|.-+.+..++.-+.- ....+++.+.. +|. ..|++|.+.|.+.|
T Consensus 183 d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g 262 (835)
T KOG2047|consen 183 DRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSG 262 (835)
T ss_pred cchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhh
Confidence 888888777777662 23344555555444433221 23334444433 222 35777777777777
Q ss_pred ChhHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHH
Q 007519 212 FHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYI 246 (600)
Q Consensus 212 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 246 (600)
.+++|.++|++.... .....-|..+.++|+
T Consensus 263 ~~ekarDvyeeai~~-----v~tvrDFt~ifd~Ya 292 (835)
T KOG2047|consen 263 LFEKARDVYEEAIQT-----VMTVRDFTQIFDAYA 292 (835)
T ss_pred hhHHHHHHHHHHHHh-----heehhhHHHHHHHHH
Confidence 777777777777654 333334444444443
No 51
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.50 E-value=1.3e-11 Score=121.39 Aligned_cols=280 Identities=13% Similarity=0.070 Sum_probs=185.8
Q ss_pred HHhcCChhHHHHHHccCCC--CCc-chHHHHHHHHHhcCChhHHHHHHHHHHhhhcCCCCCChh--hHHHHHHHHHhcCC
Q 007519 176 YCRAGEVEEGYCLFRRMPR--KNV-VSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQ--SCNSMINGYIRFGR 250 (600)
Q Consensus 176 ~~~~g~~~~A~~~~~~~~~--~~~-~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~ 250 (600)
....|+++.|.+.+.+..+ |+. ..+-....+....|+++.|.+.+.+..+. .|+.. .-......+...|+
T Consensus 94 a~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~-----~p~~~l~~~~~~a~l~l~~~~ 168 (409)
T TIGR00540 94 KLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAEL-----AGNDNILVEIARTRILLAQNE 168 (409)
T ss_pred HHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCcCchHHHHHHHHHHHHCCC
Confidence 4568999999999988765 333 33455567788899999999999999864 45543 33345778889999
Q ss_pred hhhHHHHhcccC---CCCchhHHHHHHHHHhcCChHHHHHHHhhCCCC---ChhhHHHHH----HHHHhCCChhHHHHHH
Q 007519 251 LEEAQNLFDTVP---VRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDR---DAVAWTAMI----SGLVQNELFVEATYLF 320 (600)
Q Consensus 251 ~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li----~~~~~~g~~~~a~~~~ 320 (600)
++.|...++.+. |.++.+...+...+...|++++|.+.+..+.+. +...+..+- ......+..+...+.+
T Consensus 169 ~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L 248 (409)
T TIGR00540 169 LHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGL 248 (409)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence 999999999887 567778899999999999999999999888753 222221111 1112122222222233
Q ss_pred HHHHHCCCCCChhHHHHHHHHHhcccchhhhHHHHHHHhhhcCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC--CCh
Q 007519 321 MEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVS--RDL 398 (600)
Q Consensus 321 ~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~ 398 (600)
..+.+. .|+ ..+.++..+..+...+...|+.++|.+++++..+ |+.
T Consensus 249 ~~~~~~--~p~------------------------------~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~ 296 (409)
T TIGR00540 249 LNWWKN--QPR------------------------------HRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDD 296 (409)
T ss_pred HHHHHH--CCH------------------------------HHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCc
Confidence 333222 110 0112455556666677777777777777776652 332
Q ss_pred hh---HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChh---HHHHHHHHhcccCchHHHHHHHHHHHhhcCCCCCcchH
Q 007519 399 VS---WNSMVMGFSHHGLANETLKVFESMLESGTHPNSV---TFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHY 472 (600)
Q Consensus 399 ~~---~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~---~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~ 472 (600)
.. ...........++.+.+.+.++...+. .|+.. ...++...+.+.|++++|.+.|+..... ...|+...+
T Consensus 297 ~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~--~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~-~~~p~~~~~ 373 (409)
T TIGR00540 297 RAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN--VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAAC-KEQLDANDL 373 (409)
T ss_pred ccchhHHHHHhhhcCCCChHHHHHHHHHHHHh--CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHh-hcCCCHHHH
Confidence 21 111122233456777788888877764 45444 4456778888889999999988853332 457888788
Q ss_pred HHHHHHHhhcCChHHHHHHHHhC
Q 007519 473 VSMINLLGRAGKIKEAEEFVLRL 495 (600)
Q Consensus 473 ~~l~~~~~~~g~~~~A~~~~~~~ 495 (600)
..++..+.+.|+.++|.+++++.
T Consensus 374 ~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 374 AMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHH
Confidence 88999999999999998888763
No 52
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.50 E-value=3e-10 Score=100.74 Aligned_cols=445 Identities=13% Similarity=0.093 Sum_probs=274.0
Q ss_pred HHHHHcCCChhHHHHHhhhcCC----CChhhHHHHHHHHHhcCChHHHHHHhhcCCC---CCceeHHHHHHHHHHCCChh
Q 007519 49 LSGFLQNGRLSEARRLFEEMPE----RNVVSWTAMICGLADAGRVCEARKLFEEMPE---RNVVSWNSMVVGLIRNGELN 121 (600)
Q Consensus 49 ~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~ 121 (600)
+.-+...+++..|+.+++.-.. ....+-..+..++.+.|++++|..++..+.+ ++...+..|+-++.-.|.+.
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~ 108 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYI 108 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHH
Confidence 4555677888999888887664 1224556677888899999999999987765 67778888888888899999
Q ss_pred HHHHHhhcCCCCCcccHHHHHHHHHhcCCHhHHHHHHHhcccCCchhHHHHHHHHHhcCChhHHHHHHccCCCC--Ccch
Q 007519 122 EARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRK--NVVS 199 (600)
Q Consensus 122 ~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~ 199 (600)
+|.++-.+..+ ++-.-..+.....+.++-++-..+.+.+.+.. .--.+|.+.....-.+.+|++++.++... +-..
T Consensus 109 eA~~~~~ka~k-~pL~~RLlfhlahklndEk~~~~fh~~LqD~~-EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~a 186 (557)
T KOG3785|consen 109 EAKSIAEKAPK-TPLCIRLLFHLAHKLNDEKRILTFHSSLQDTL-EDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIA 186 (557)
T ss_pred HHHHHHhhCCC-ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhH-HHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhh
Confidence 99998877743 22233344455567788777776666654322 33445666666667889999999998864 3344
Q ss_pred HHH-HHHHHHhcCChhHHHHHHHHHHhhhcCCCCCC-hhhHHHHHHHHHhc--CChh--hHHHHhcccCCCCchhHHHHH
Q 007519 200 WTA-MIGGFAWNGFHKESLLLFIEMKGICDNGNNCN-VQSCNSMINGYIRF--GRLE--EAQNLFDTVPVRDEISWTSMI 273 (600)
Q Consensus 200 ~~~-li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~--~~~~--~a~~~~~~~~~~~~~~~~~l~ 273 (600)
.|. +.-+|.+..-++-+.++++-..+. .|| +...|..+....+. |+.. +-.++.+.+...-+ .+
T Consensus 187 lNVy~ALCyyKlDYydvsqevl~vYL~q-----~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~-----f~ 256 (557)
T KOG3785|consen 187 LNVYMALCYYKLDYYDVSQEVLKVYLRQ-----FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYP-----FI 256 (557)
T ss_pred hHHHHHHHHHhcchhhhHHHHHHHHHHh-----CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccch-----hH
Confidence 444 344677888888899999888875 444 44445444433332 3221 22222222221111 11
Q ss_pred HHHHh-----cCChHHHHHHHhhCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHH-----h
Q 007519 274 DGYLS-----VGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAA-----G 343 (600)
Q Consensus 274 ~~~~~-----~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~-----~ 343 (600)
.-.++ ...-+.|++++-.+.+.=+.+--.++-.|.++++..+|..+.+++.. ..|-......+..+. .
T Consensus 257 ~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~aalGQe~g 334 (557)
T KOG3785|consen 257 EYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFAALGQETG 334 (557)
T ss_pred HHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHHHHhhhhcC
Confidence 22222 23345666666555443333444566668899999999998877643 244444444443322 2
Q ss_pred cccchhhhHHHHHHHhhhcCCCchh-HHHHHHHHHHhcCChHHHHHHHhcCC---CCChhhHHHHHHHHHhcCChHHHHH
Q 007519 344 ATANIDLGRQIHCVLMKTESESDLI-LENCLISMYAKCGVIDNAYNIFSNMV---SRDLVSWNSMVMGFSHHGLANETLK 419 (600)
Q Consensus 344 ~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~ 419 (600)
+......|++.|+.....+...|.. --.++..++.-..++++++.+++.+. ..|-..--.+.++++..|++.+|++
T Consensus 335 SreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEe 414 (557)
T KOG3785|consen 335 SREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEE 414 (557)
T ss_pred cHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHH
Confidence 2334566777777776665544322 22345555555667777777777665 2222223336777778888888888
Q ss_pred HHHHHHHcCCCCChhHHHHH-HHHhcccCchHHHHHHHHHHHhhcCCCCC-cchHHHHHHHHhhcCChHHHHHHHHhCC-
Q 007519 420 VFESMLESGTHPNSVTFLGI-LSACSHAGLVSRGWELFNAMFDVYKIQPG-PEHYVSMINLLGRAGKIKEAEEFVLRLP- 496 (600)
Q Consensus 420 ~~~~m~~~~~~p~~~~~~~l-~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~- 496 (600)
+|-......+ -|..+|.++ .++|.+.+.++.|++++-++-. ..+ ......++.-|.+.+.+--|.+.|+.++
T Consensus 415 lf~~is~~~i-kn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t----~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~ 489 (557)
T KOG3785|consen 415 LFIRISGPEI-KNKILYKSMLARCYIRNKKPQLAWDMMLKTNT----PSERFSLLQLIANDCYKANEFYYAAKAFDELEI 489 (557)
T ss_pred HHhhhcChhh-hhhHHHHHHHHHHHHhcCCchHHHHHHHhcCC----chhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHc
Confidence 8776654332 244555544 4677788888888776654421 112 2233344566777777777777777775
Q ss_pred CCCCHHHHHHHHHHHh
Q 007519 497 FEPDHRIWGALLGACG 512 (600)
Q Consensus 497 ~~p~~~~~~~l~~~~~ 512 (600)
..|++..|..--++|.
T Consensus 490 lDP~pEnWeGKRGACa 505 (557)
T KOG3785|consen 490 LDPTPENWEGKRGACA 505 (557)
T ss_pred cCCCccccCCccchHH
Confidence 6777777766555555
No 53
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=4.1e-10 Score=106.20 Aligned_cols=278 Identities=11% Similarity=0.016 Sum_probs=176.7
Q ss_pred CchhHHHHHHHHHhcCChHHHHHHHhhCCCC---ChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHH
Q 007519 265 DEISWTSMIDGYLSVGQVSNAYYLFHNMPDR---DAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGA 341 (600)
Q Consensus 265 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~ 341 (600)
++.......+-+...+++.+..++++.+.+. +...+..-|.++...|+..+-..+=.+|++. .+-...+|-.+.--
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~Y 321 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCY 321 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHH
Confidence 3334444445555566666666666665542 2334444455666666666666666666654 23444566666666
Q ss_pred HhcccchhhhHHHHHHHhhhcCCCchhHHHHHHHHHHhcCChHHHHHHHhcCC---CCChhhHHHHHHHHHhcCChHHHH
Q 007519 342 AGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMV---SRDLVSWNSMVMGFSHHGLANETL 418 (600)
Q Consensus 342 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~ 418 (600)
|...|+.++|++.+.+....+..- ...|-.+...|+-.|.-++|...+.... +.....+--+..-|.+.++.+-|.
T Consensus 322 Yl~i~k~seARry~SKat~lD~~f-gpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe 400 (611)
T KOG1173|consen 322 YLMIGKYSEARRYFSKATTLDPTF-GPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAE 400 (611)
T ss_pred HHHhcCcHHHHHHHHHHhhcCccc-cHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHH
Confidence 666677777777776555443322 2235556666777777777766665443 222222333455577788888888
Q ss_pred HHHHHHHHcCCCCCh-hHHHHHHHHhcccCchHHHHHHHHHHHhhcC-CCC----CcchHHHHHHHHhhcCChHHHHHHH
Q 007519 419 KVFESMLESGTHPNS-VTFLGILSACSHAGLVSRGWELFNAMFDVYK-IQP----GPEHYVSMINLLGRAGKIKEAEEFV 492 (600)
Q Consensus 419 ~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~p----~~~~~~~l~~~~~~~g~~~~A~~~~ 492 (600)
+.|.+... +-|+. ..++-+.-.....+.+.+|..+|+.....-. ..+ -..+++.|+.+|.+.+++++|+..+
T Consensus 401 ~Ff~~A~a--i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~ 478 (611)
T KOG1173|consen 401 KFFKQALA--IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYY 478 (611)
T ss_pred HHHHHHHh--cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHH
Confidence 88888775 45544 4455554445567888888888887763211 111 2335788899999999999999999
Q ss_pred HhCC-CCC-CHHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCCCcHHHHhHHHH
Q 007519 493 LRLP-FEP-DHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYA 547 (600)
Q Consensus 493 ~~~~-~~p-~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 547 (600)
++.. ..| +..++.++.-.+. ..|+.+.|+..|.+++.++|++..+-..|..+..
T Consensus 479 q~aL~l~~k~~~~~asig~iy~-llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie 534 (611)
T KOG1173|consen 479 QKALLLSPKDASTHASIGYIYH-LLGNLDKAIDHFHKALALKPDNIFISELLKLAIE 534 (611)
T ss_pred HHHHHcCCCchhHHHHHHHHHH-HhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 8864 444 5566777777777 8899999999999999999977666666665543
No 54
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.47 E-value=4.1e-10 Score=106.74 Aligned_cols=445 Identities=11% Similarity=0.094 Sum_probs=252.2
Q ss_pred CCCCCCCCCCc-cchhHHHHHHHhcCChhhHHHHhccCCC--C-CcchHHHHHHHHHcCCChhHHHHHhhhcCCCChhhH
Q 007519 1 MSERNHPKSLV-VHLTSSITKYSKRGFIDEAKALFQLMPQ--R-NVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSW 76 (600)
Q Consensus 1 ~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 76 (600)
|++...+..+. ..+-+-+..+...|++++|.+...++.. | +..++..-+-++.+.+.+++|+++.+.-..-+....
T Consensus 1 ms~~~~~~~~~~~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~ 80 (652)
T KOG2376|consen 1 MSKEKSGGSDNLEALLTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINS 80 (652)
T ss_pred CCCcccCCcccHHHHHHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcch
Confidence 55554444332 4455677888999999999999999875 3 456788888899999999999988877653221111
Q ss_pred HHHHHHH--HhcCChHHHHHHhhcCCCCCceeHHHHHHHHHHCCChhHHHHHhhcCCCCCcccHHHHHHHH-HhcCCHhH
Q 007519 77 TAMICGL--ADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGY-VECCMMGE 153 (600)
Q Consensus 77 ~~l~~~~--~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~ 153 (600)
-.+=.+| .+.++.++|+..++...+.+..+...-...+.+.|++++|+++|+++.+.+...+...+.+- ...+-.-.
T Consensus 81 ~~fEKAYc~Yrlnk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~ 160 (652)
T KOG2376|consen 81 FFFEKAYCEYRLNKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQ 160 (652)
T ss_pred hhHHHHHHHHHcccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhh
Confidence 1123344 58899999999999666666667888889999999999999999999876665555555432 22222222
Q ss_pred HHHHHHhcccCCchhHHHHHH---HHHhcCChhHHHHHHccCC--------CCC-----cc-----hHHHHHHHHHhcCC
Q 007519 154 AIVLFEEMEERNVVTWTSMIS---GYCRAGEVEEGYCLFRRMP--------RKN-----VV-----SWTAMIGGFAWNGF 212 (600)
Q Consensus 154 A~~~~~~~~~~~~~~~~~l~~---~~~~~g~~~~A~~~~~~~~--------~~~-----~~-----~~~~li~~~~~~~~ 212 (600)
+. +.+........+|..+.+ .+...|++.+|+++++... ..| +. .-..+...+...|+
T Consensus 161 ~~-~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gq 239 (652)
T KOG2376|consen 161 VQ-LLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQ 239 (652)
T ss_pred HH-HHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcc
Confidence 22 344443333445554443 4567899999999998772 111 11 12344556778899
Q ss_pred hhHHHHHHHHHHhhhcCCCCCChhhHHHHHH---HHHhcCCh-h-hHHHHhcccCCC---------------CchhHHHH
Q 007519 213 HKESLLLFIEMKGICDNGNNCNVQSCNSMIN---GYIRFGRL-E-EAQNLFDTVPVR---------------DEISWTSM 272 (600)
Q Consensus 213 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~~~~-~-~a~~~~~~~~~~---------------~~~~~~~l 272 (600)
-++|..++...++. ..+|........+ +.....++ + .++..++..... ....-+.+
T Consensus 240 t~ea~~iy~~~i~~----~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~l 315 (652)
T KOG2376|consen 240 TAEASSIYVDIIKR----NPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNAL 315 (652)
T ss_pred hHHHHHHHHHHHHh----cCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999875 3444433222222 12222221 2 111122211100 01111122
Q ss_pred HHHHHhcCChHHHHHHHhhCCCCC-hhhHHHHHH-HH-HhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhcccchh
Q 007519 273 IDGYLSVGQVSNAYYLFHNMPDRD-AVAWTAMIS-GL-VQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANID 349 (600)
Q Consensus 273 ~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~li~-~~-~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~ 349 (600)
+..| .+.-+.+.++-..+.... ...+.+++. ++ ++...+..+.+++...-+....-+..+....+......|+++
T Consensus 316 L~l~--tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~ 393 (652)
T KOG2376|consen 316 LALF--TNKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPE 393 (652)
T ss_pred HHHH--hhhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHH
Confidence 2222 344455555555544422 122333332 22 222246666666666555421112234444555667777888
Q ss_pred hhHHHHH--------HHhhhcCCCchhHHHHHHHHHHhcCChHHHHHHHhcCC------CCC----hhhHHHHHHHHHhc
Q 007519 350 LGRQIHC--------VLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMV------SRD----LVSWNSMVMGFSHH 411 (600)
Q Consensus 350 ~a~~~~~--------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~------~~~----~~~~~~l~~~~~~~ 411 (600)
.|.+++. .+.+.+..| .+...++..+.+.++-+.|..++.+.. .+. ..++.-....-.+.
T Consensus 394 ~A~~il~~~~~~~~ss~~~~~~~P--~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~ 471 (652)
T KOG2376|consen 394 VALEILSLFLESWKSSILEAKHLP--GTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRH 471 (652)
T ss_pred HHHHHHHHHhhhhhhhhhhhccCh--hHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhc
Confidence 8877777 344444433 333456666666666555555554443 111 12233333444556
Q ss_pred CChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccCchHHHHHHH
Q 007519 412 GLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELF 456 (600)
Q Consensus 412 ~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 456 (600)
|+.++|..+++++.+.. +++..+...++.+|++. +.+.|..+-
T Consensus 472 G~~~ea~s~leel~k~n-~~d~~~l~~lV~a~~~~-d~eka~~l~ 514 (652)
T KOG2376|consen 472 GNEEEASSLLEELVKFN-PNDTDLLVQLVTAYARL-DPEKAESLS 514 (652)
T ss_pred CchHHHHHHHHHHHHhC-CchHHHHHHHHHHHHhc-CHHHHHHHh
Confidence 66677777777766642 55556666666666543 344444443
No 55
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.47 E-value=4e-09 Score=101.03 Aligned_cols=282 Identities=12% Similarity=0.148 Sum_probs=163.6
Q ss_pred hHHHHHHHHHhcCChHHHHHHHhhCCCCCh-------hhHHHHHHHHHhCCChhHHHHHHHHHHHCCCC-----------
Q 007519 268 SWTSMIDGYLSVGQVSNAYYLFHNMPDRDA-------VAWTAMISGLVQNELFVEATYLFMEMRAHGVP----------- 329 (600)
Q Consensus 268 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-------~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~----------- 329 (600)
.|..+...|-..|+++.|..+|++...-+- .+|-.....=.+..+++.|+.+++.....--.
T Consensus 389 Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~p 468 (835)
T KOG2047|consen 389 LWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEP 468 (835)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCc
Confidence 466677777777777777777777655221 23444444445566677777766655422100
Q ss_pred ------CChhHHHHHHHHHhcccchhhhHHHHHHHhhhcCCCchhHHHHHHHHHHhcCChHHHHHHHhcCC----CCCh-
Q 007519 330 ------PLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMV----SRDL- 398 (600)
Q Consensus 330 ------p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~- 398 (600)
-+...|...+..--..|-++....+++.+....+-....+ -.....+-...-++++.++|++-+ .|++
T Consensus 469 vQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii-~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~ 547 (835)
T KOG2047|consen 469 VQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQII-INYAMFLEEHKYFEESFKAYERGISLFKWPNVY 547 (835)
T ss_pred HHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHH-HHHHHHHHhhHHHHHHHHHHHcCCccCCCccHH
Confidence 1122344444444566778888888888888766433222 223334556677899999999876 3444
Q ss_pred hhHHHHHHHHHh---cCChHHHHHHHHHHHHcCCCCChhHHHHHH--HHhcccCchHHHHHHHHHHHhhcCCCCC--cch
Q 007519 399 VSWNSMVMGFSH---HGLANETLKVFESMLESGTHPNSVTFLGIL--SACSHAGLVSRGWELFNAMFDVYKIQPG--PEH 471 (600)
Q Consensus 399 ~~~~~l~~~~~~---~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~--~~~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~ 471 (600)
..|+..+.-+.+ ....+.|..+|++..+ |.+|...-+..|+ ..-.+-|....|..+++++.. ++.+. ...
T Consensus 548 diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~--~v~~a~~l~m 624 (835)
T KOG2047|consen 548 DIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS--AVKEAQRLDM 624 (835)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCHHHHHHH
Confidence 477777665544 2357899999999998 7887664333333 223455888889999998875 44442 445
Q ss_pred HHHHHHHHhhcCChHHHHHHHHhCC-CCCCHHHHHHHHH--HHhhhhCCHHHHHHHHHHHHhhC-CC-CCCcHHHHhHHH
Q 007519 472 YVSMINLLGRAGKIKEAEEFVLRLP-FEPDHRIWGALLG--ACGFCEGNAEIAEHAAKRLLELD-PL-NAPAHVVLCNIY 546 (600)
Q Consensus 472 ~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l~~--~~~~~~g~~~~a~~~~~~~~~~~-p~-~~~~~~~l~~~~ 546 (600)
|+..+.--...=-...-..++++.. .-|+..+-...+. -.-.+.|..+.|..+|.-.-++. |. ++..+...=..-
T Consensus 625 yni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FE 704 (835)
T KOG2047|consen 625 YNIYIKKAAEIYGVPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFE 704 (835)
T ss_pred HHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHH
Confidence 6665543322211222233333321 2244443332222 12226788888888887777753 32 334455555556
Q ss_pred HhhCCcH
Q 007519 547 AASGRHV 553 (600)
Q Consensus 547 ~~~g~~~ 553 (600)
.+.|+-+
T Consensus 705 vrHGned 711 (835)
T KOG2047|consen 705 VRHGNED 711 (835)
T ss_pred HhcCCHH
Confidence 6777743
No 56
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.47 E-value=4.6e-11 Score=104.60 Aligned_cols=265 Identities=13% Similarity=0.151 Sum_probs=161.1
Q ss_pred cCChhHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHhcCChhhHHHHhcccCCCCch-------hHHHHHHHHHhcCCh
Q 007519 210 NGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEI-------SWTSMIDGYLSVGQV 282 (600)
Q Consensus 210 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-------~~~~l~~~~~~~~~~ 282 (600)
..+.++|.+.|-+|.+. .+-+..+-.+|.+.|.+.|..|.|+.+...+...... ....|..-|...|-+
T Consensus 48 s~Q~dKAvdlF~e~l~~----d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~ 123 (389)
T COG2956 48 SNQPDKAVDLFLEMLQE----DPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLL 123 (389)
T ss_pred hcCcchHHHHHHHHHhc----CchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhh
Confidence 46778888888888763 2233445566777777888888888887777633222 233455666777777
Q ss_pred HHHHHHHhhCCCCC---hhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhcccchhhhHHHHHHHh
Q 007519 283 SNAYYLFHNMPDRD---AVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLM 359 (600)
Q Consensus 283 ~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 359 (600)
|.|+.+|..+.+.+ ..+...|+..|....+|++|++.-+++.+.|-.+...- |
T Consensus 124 DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~e----I-------------------- 179 (389)
T COG2956 124 DRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVE----I-------------------- 179 (389)
T ss_pred hHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhH----H--------------------
Confidence 77777777766522 23555667777777777777777777766543332111 1
Q ss_pred hhcCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHH
Q 007519 360 KTESESDLILENCLISMYAKCGVIDNAYNIFSNMVS---RDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTF 436 (600)
Q Consensus 360 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~ 436 (600)
...|.-|...+....+++.|..++.+... ..+..--.+.......|++++|++.|+...+.+..--..+.
T Consensus 180 -------AqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl 252 (389)
T COG2956 180 -------AQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVL 252 (389)
T ss_pred -------HHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHH
Confidence 12234455555556666677776666652 22333334556677777777777777777765433334555
Q ss_pred HHHHHHhcccCchHHHHHHHHHHHhhcCCCCCcchHHHHHHHHhhcCChHHHHHHH-HhCCCCCCHHHHHHHHHHHh
Q 007519 437 LGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFV-LRLPFEPDHRIWGALLGACG 512 (600)
Q Consensus 437 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~-~~~~~~p~~~~~~~l~~~~~ 512 (600)
..|..+|.+.|+.++....+.++.+. .+.+..-..+...-....-.+.|...+ +.+..+|+...+..++..-.
T Consensus 253 ~~L~~~Y~~lg~~~~~~~fL~~~~~~---~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l 326 (389)
T COG2956 253 EMLYECYAQLGKPAEGLNFLRRAMET---NTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHL 326 (389)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHc---cCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhh
Confidence 66667777777777777777777653 445555555555544444445554444 33456677777666666543
No 57
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.44 E-value=5.2e-10 Score=101.30 Aligned_cols=282 Identities=12% Similarity=0.030 Sum_probs=182.4
Q ss_pred cCChhHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHhcCChhhHHHHhcccCCC--C--chhHHHHHHHHHhcCChHHH
Q 007519 210 NGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVR--D--EISWTSMIDGYLSVGQVSNA 285 (600)
Q Consensus 210 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~--~~~~~~l~~~~~~~~~~~~A 285 (600)
.|++.+|++...+..+. +..| ...|..-..+....|+.+.+-.++.++.++ | ..+.-+........|+.+.|
T Consensus 97 eG~~~qAEkl~~rnae~---~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA 172 (400)
T COG3071 97 EGDFQQAEKLLRRNAEH---GEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAA 172 (400)
T ss_pred cCcHHHHHHHHHHhhhc---Ccch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhH
Confidence 57888888877776643 2222 223444445556677777777777776533 2 23344455556666666666
Q ss_pred HHHHhhCCC---CChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhcccchhhhHHHHHHHhhhc
Q 007519 286 YYLFHNMPD---RDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTE 362 (600)
Q Consensus 286 ~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 362 (600)
..-++++.+ .++........+|.+.|++.....++..|.+.|+-.++..-.
T Consensus 173 ~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~-------------------------- 226 (400)
T COG3071 173 RENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAAR-------------------------- 226 (400)
T ss_pred HHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHH--------------------------
Confidence 655554433 455666666666777777777777777666666443322110
Q ss_pred CCCchhHHHHHHHHHHhcCChHHHHHHHhcCC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHH
Q 007519 363 SESDLILENCLISMYAKCGVIDNAYNIFSNMV---SRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGI 439 (600)
Q Consensus 363 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 439 (600)
....+++.+++-....+..+.-...++..+ +.++..-..++.-+.+.|+.++|.++..+..+++..|+ ...
T Consensus 227 --le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~ 300 (400)
T COG3071 227 --LEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCR 300 (400)
T ss_pred --HHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHH
Confidence 012344555555555556666666677666 44566667777888888888888888888888777776 222
Q ss_pred HHHhcccCchHHHHHHHHHHHhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHhhhhCCH
Q 007519 440 LSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRL-PFEPDHRIWGALLGACGFCEGNA 518 (600)
Q Consensus 440 ~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~g~~ 518 (600)
.-.+.+.++...-++..+...+.++.. +..+.+|+..|.+.+.|.+|.+.|+.. ...|+..+|+.+..++. ..|+.
T Consensus 301 ~~~~l~~~d~~~l~k~~e~~l~~h~~~--p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~-~~g~~ 377 (400)
T COG3071 301 LIPRLRPGDPEPLIKAAEKWLKQHPED--PLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALD-QLGEP 377 (400)
T ss_pred HHhhcCCCCchHHHHHHHHHHHhCCCC--hhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHH-HcCCh
Confidence 334566777777777777666653433 467778888888888888888888765 37778888888888887 88888
Q ss_pred HHHHHHHHHHHh
Q 007519 519 EIAEHAAKRLLE 530 (600)
Q Consensus 519 ~~a~~~~~~~~~ 530 (600)
+.|.+..++.+-
T Consensus 378 ~~A~~~r~e~L~ 389 (400)
T COG3071 378 EEAEQVRREALL 389 (400)
T ss_pred HHHHHHHHHHHH
Confidence 888877777665
No 58
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.44 E-value=1.8e-09 Score=102.55 Aligned_cols=453 Identities=11% Similarity=0.062 Sum_probs=252.1
Q ss_pred HHHHHhcCChHHHHHHhhcCCC---CCceeHHHHHHHHHHCCChhHHHHHhhcCCCCCc--ccHHHHHHHHHhcCCHhHH
Q 007519 80 ICGLADAGRVCEARKLFEEMPE---RNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNV--ISWNAMIAGYVECCMMGEA 154 (600)
Q Consensus 80 ~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~A 154 (600)
++.+...|++++|.+...+++. .+...+..-+-++++.+.|++|+.+.+.-..... ..+..-.-+..+.+..++|
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrlnk~Dea 98 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRLNKLDEA 98 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHcccHHHH
Confidence 4556677888888888888776 3455677777788888999999877766543121 1112223334477888888
Q ss_pred HHHHHhcccCCchhHHHHHHHHHhcCChhHHHHHHccCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhhhcCCCCCC
Q 007519 155 IVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCN 234 (600)
Q Consensus 155 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 234 (600)
.+.++-..+.+..+...-...+.+.|++++|..+|+.+.+.+...+..-+.+-+..--.....++.+.. ...|
T Consensus 99 lk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v------~~v~- 171 (652)
T KOG2376|consen 99 LKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSV------PEVP- 171 (652)
T ss_pred HHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhc------cCCC-
Confidence 888885555555566666777888888888888888887665555544443322111000111111111 1122
Q ss_pred hhhHHHHHH---HHHhcCChhhHHHHhcccCCCCchhHHHHHHHHHhcCChHHHHHHHhhCCCCCh-hhHHHHHHHHHhC
Q 007519 235 VQSCNSMIN---GYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDA-VAWTAMISGLVQN 310 (600)
Q Consensus 235 ~~~~~~l~~---~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~li~~~~~~ 310 (600)
..+|..+.+ .+...|++.+|+++++....-.-. .+ ..++.. -.++- ... ..--.+...+...
T Consensus 172 e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e-------~l-~~~d~~-eEeie-----~el~~IrvQlayVlQ~~ 237 (652)
T KOG2376|consen 172 EDSYELLYNTACILIENGKYNQAIELLEKALRICRE-------KL-EDEDTN-EEEIE-----EELNPIRVQLAYVLQLQ 237 (652)
T ss_pred cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH-------hh-cccccc-hhhHH-----HHHHHHHHHHHHHHHHh
Confidence 334444433 344677777777777655200000 00 000000 00000 000 1122344556677
Q ss_pred CChhHHHHHHHHHHHCCCCCChhHHHHHHH---HHhcccchhh--hHHHHH-----------HHhhhcCCCchhHHHHHH
Q 007519 311 ELFVEATYLFMEMRAHGVPPLNATFSVLFG---AAGATANIDL--GRQIHC-----------VLMKTESESDLILENCLI 374 (600)
Q Consensus 311 g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~---~~~~~~~~~~--a~~~~~-----------~~~~~~~~~~~~~~~~l~ 374 (600)
|+..+|..+|...++.. ++|........+ +.....++.. +...++ .............-+.++
T Consensus 238 Gqt~ea~~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL 316 (652)
T KOG2376|consen 238 GQTAEASSIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALL 316 (652)
T ss_pred cchHHHHHHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888777777764 444432222221 2211111111 000000 001111111122223444
Q ss_pred HHHHhcCChHHHHHHHhcCCCCC-hhhHHHHHHH-H-HhcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHhcccCchH
Q 007519 375 SMYAKCGVIDNAYNIFSNMVSRD-LVSWNSMVMG-F-SHHGLANETLKVFESMLESGTHPN-SVTFLGILSACSHAGLVS 450 (600)
Q Consensus 375 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~l~~~-~-~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~ 450 (600)
..|. +..+.+.++........ ...+.+++.. . ++...+.++.+++....+.. +-+ .......+......|+++
T Consensus 317 ~l~t--nk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~-p~~s~~v~L~~aQl~is~gn~~ 393 (652)
T KOG2376|consen 317 ALFT--NKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGH-PEKSKVVLLLRAQLKISQGNPE 393 (652)
T ss_pred HHHh--hhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccC-CchhHHHHHHHHHHHHhcCCHH
Confidence 4443 45567777777776333 2334444433 2 22335778888888877642 222 344455566778899999
Q ss_pred HHHHHHH--------HHHhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhCC--------CCCCHHHHHHHHHHHhhh
Q 007519 451 RGWELFN--------AMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLP--------FEPDHRIWGALLGACGFC 514 (600)
Q Consensus 451 ~a~~~~~--------~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~p~~~~~~~l~~~~~~~ 514 (600)
.|.+++. .+.+ +.-.+.+..++...+.+.++.+.|..++++.. ..+...........+-.+
T Consensus 394 ~A~~il~~~~~~~~ss~~~---~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr 470 (652)
T KOG2376|consen 394 VALEILSLFLESWKSSILE---AKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLR 470 (652)
T ss_pred HHHHHHHHHhhhhhhhhhh---hccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHh
Confidence 9999998 3332 22345577778888888888777777766542 222222222222233237
Q ss_pred hCCHHHHHHHHHHHHhhCCCCCCcHHHHhHHHHhhCCcHHHHHHHHH
Q 007519 515 EGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMD 561 (600)
Q Consensus 515 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 561 (600)
.|+.++|..+++++++.+|++..+...++.+|.+. +.+.|..+-+.
T Consensus 471 ~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~-d~eka~~l~k~ 516 (652)
T KOG2376|consen 471 HGNEEEASSLLEELVKFNPNDTDLLVQLVTAYARL-DPEKAESLSKK 516 (652)
T ss_pred cCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhc-CHHHHHHHhhc
Confidence 79999999999999999999999999999998776 45677665543
No 59
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.42 E-value=2.4e-10 Score=100.22 Aligned_cols=292 Identities=15% Similarity=0.139 Sum_probs=202.4
Q ss_pred hHHHHHHHHHhcCChhhHHHHhcccCCCCchh---HHHHHHHHHhcCChHHHHHHHhhCCC-CChh------hHHHHHHH
Q 007519 237 SCNSMINGYIRFGRLEEAQNLFDTVPVRDEIS---WTSMIDGYLSVGQVSNAYYLFHNMPD-RDAV------AWTAMISG 306 (600)
Q Consensus 237 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~------~~~~li~~ 306 (600)
.|..=++.+ -.++.++|..+|-+|...|+.+ .-+|.+.|.+.|..+.|+++-+.+.+ ||.. +...|..-
T Consensus 38 ~Yv~GlNfL-Ls~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~D 116 (389)
T COG2956 38 DYVKGLNFL-LSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRD 116 (389)
T ss_pred HHHhHHHHH-hhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHH
Confidence 344444433 3467899999999988665554 45788899999999999999988766 5432 44556777
Q ss_pred HHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhcccchhhhHHHHHHHhhhcCCCchhHHHHHHHHHHhcCChHHH
Q 007519 307 LVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNA 386 (600)
Q Consensus 307 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 386 (600)
|...|-+|+|..+|..+.+.| .--...... |+..|-...+|++|
T Consensus 117 ym~aGl~DRAE~~f~~L~de~-efa~~Alqq-----------------------------------Ll~IYQ~treW~KA 160 (389)
T COG2956 117 YMAAGLLDRAEDIFNQLVDEG-EFAEGALQQ-----------------------------------LLNIYQATREWEKA 160 (389)
T ss_pred HHHhhhhhHHHHHHHHHhcch-hhhHHHHHH-----------------------------------HHHHHHHhhHHHHH
Confidence 888899999999999888754 112223333 44455555555555
Q ss_pred HHHHhcCCCCCh--------hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHH-HHHHHhcccCchHHHHHHHH
Q 007519 387 YNIFSNMVSRDL--------VSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFL-GILSACSHAGLVSRGWELFN 457 (600)
Q Consensus 387 ~~~~~~~~~~~~--------~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~-~l~~~~~~~g~~~~a~~~~~ 457 (600)
.++-+++.+-+. ..|.-+...+....+.+.|..++.+..+. .|+.+--+ .+.+.....|+++.|.+.++
T Consensus 161 Id~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa--~~~cvRAsi~lG~v~~~~g~y~~AV~~~e 238 (389)
T COG2956 161 IDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQA--DKKCVRASIILGRVELAKGDYQKAVEALE 238 (389)
T ss_pred HHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh--CccceehhhhhhHHHHhccchHHHHHHHH
Confidence 555444432111 13344556666778999999999999875 45443333 44577889999999999999
Q ss_pred HHHhhcCCCCC--cchHHHHHHHHhhcCChHHHHHHHHhCC-CCCCHHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCC
Q 007519 458 AMFDVYKIQPG--PEHYVSMINLLGRAGKIKEAEEFVLRLP-FEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPL 534 (600)
Q Consensus 458 ~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~ 534 (600)
.+.+. +|+ +.+...|..+|...|+.++...++.++. ..+.......+..... .....+.|...+.+-+...|
T Consensus 239 ~v~eQ---n~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~l~l~~lie-~~~G~~~Aq~~l~~Ql~r~P- 313 (389)
T COG2956 239 RVLEQ---NPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGADAELMLADLIE-LQEGIDAAQAYLTRQLRRKP- 313 (389)
T ss_pred HHHHh---ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCccHHHHHHHHHH-HhhChHHHHHHHHHHHhhCC-
Confidence 99876 454 7788899999999999999999998864 4555555454444444 55667778888888888999
Q ss_pred CCCcHHHHhHHHHh---hCCcHHHHHHHHHHhhcCCccCCC
Q 007519 535 NAPAHVVLCNIYAA---SGRHVEEHKLRMDMGLKGVRKVPG 572 (600)
Q Consensus 535 ~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~ 572 (600)
+...+..++..... -|+..+....++.|....++..|.
T Consensus 314 t~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~l~~~~~ 354 (389)
T COG2956 314 TMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQLRRKPR 354 (389)
T ss_pred cHHHHHHHHHhhhccccccchhhhHHHHHHHHHHHHhhcCC
Confidence 77777777776543 345566666777777666666663
No 60
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.42 E-value=3.3e-11 Score=109.98 Aligned_cols=198 Identities=13% Similarity=0.080 Sum_probs=162.9
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHhcCC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHH
Q 007519 366 DLILENCLISMYAKCGVIDNAYNIFSNMV---SRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSA 442 (600)
Q Consensus 366 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 442 (600)
....+..+...+...|++++|...+++.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+...
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 35566778888999999999999998775 4456788888899999999999999999998763 4455667777888
Q ss_pred hcccCchHHHHHHHHHHHhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHhhhhCCHHH
Q 007519 443 CSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLP-FEP-DHRIWGALLGACGFCEGNAEI 520 (600)
Q Consensus 443 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~g~~~~ 520 (600)
+...|++++|.+.++++.+..........+..++..+...|++++|.+.+++.. ..| +...+..+...+. ..|++++
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~-~~~~~~~ 187 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYY-LRGQYKD 187 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHH-HcCCHHH
Confidence 899999999999999998642222245677788999999999999999998864 344 4556777777777 8999999
Q ss_pred HHHHHHHHHhhCCCCCCcHHHHhHHHHhhCCcHHHHHHHHHHhhc
Q 007519 521 AEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLK 565 (600)
Q Consensus 521 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 565 (600)
|...++++.+..|.++..+..++.++...|+.++|..+.+.+.+.
T Consensus 188 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 188 ARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 999999999998888888889999999999999999988776543
No 61
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.38 E-value=6.4e-10 Score=100.71 Aligned_cols=276 Identities=12% Similarity=0.062 Sum_probs=177.6
Q ss_pred cCChHHHHHHHhhCCC---CChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhcccchhhhHHHH
Q 007519 279 VGQVSNAYYLFHNMPD---RDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIH 355 (600)
Q Consensus 279 ~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 355 (600)
.|++.+|++...+-.+ .....|..-+.+-.+.|+.+.+-.++.+..+.--.++..............|+.+.|..-.
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 3555555555544333 1223344444455555666666666665555322333333444444555556666665555
Q ss_pred HHHhhhcCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCC-----------ChhhHHHHHHHHHhcCChHHHHHHHHHH
Q 007519 356 CVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSR-----------DLVSWNSMVMGFSHHGLANETLKVFESM 424 (600)
Q Consensus 356 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----------~~~~~~~l~~~~~~~~~~~~a~~~~~~m 424 (600)
..+.+.+.. .+.+.....++|.+.|++.....++.++.+. ...+|+.++.-....+..+.-...|+..
T Consensus 177 ~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~ 255 (400)
T COG3071 177 DQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQ 255 (400)
T ss_pred HHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhc
Confidence 555554433 3444555666666666666666666665422 1246777777776667677766777776
Q ss_pred HHcCCCCChhHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHH
Q 007519 425 LESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRL-PFEP-DHR 502 (600)
Q Consensus 425 ~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~ 502 (600)
-.. .+.++..-.+++.-+.+.|+.++|.++.+...++ ..+|. ...++ ...+-++.+.-++..++. ...| ++.
T Consensus 256 pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~-~~D~~---L~~~~-~~l~~~d~~~l~k~~e~~l~~h~~~p~ 329 (400)
T COG3071 256 PRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKR-QWDPR---LCRLI-PRLRPGDPEPLIKAAEKWLKQHPEDPL 329 (400)
T ss_pred cHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHh-ccChh---HHHHH-hhcCCCCchHHHHHHHHHHHhCCCChh
Confidence 554 4556666777888889999999999999999886 55555 22222 234555555544444442 1222 335
Q ss_pred HHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCCCcHHHHhHHHHhhCCcHHHHHHHHHHh
Q 007519 503 IWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMG 563 (600)
Q Consensus 503 ~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 563 (600)
.+..+...|. +.+.+.+|..+++.+++..| +...|..++.++.+.|+..+|.+.+++..
T Consensus 330 L~~tLG~L~~-k~~~w~kA~~~leaAl~~~~-s~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 330 LLSTLGRLAL-KNKLWGKASEALEAALKLRP-SASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred HHHHHHHHHH-HhhHHHHHHHHHHHHHhcCC-ChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 6677777788 99999999999999999999 99999999999999999999999777655
No 62
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.36 E-value=1.9e-08 Score=97.89 Aligned_cols=282 Identities=15% Similarity=0.138 Sum_probs=132.7
Q ss_pred hHHHHHHHhcCChhhHHHHhccCCCCCcchHHHHHHHHHcCCChhHHHHHhhhc--CCCChhhHHHHHHHHHhcCChHHH
Q 007519 15 TSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEM--PERNVVSWTAMICGLADAGRVCEA 92 (600)
Q Consensus 15 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A 92 (600)
.+.+++++..|.-++|-++-+ .+-. -.+-|..|.+.|.+..|.+....= +..|......+..++.+..-+++|
T Consensus 593 ~sy~q~l~dt~qd~ka~elk~----sdgd-~laaiqlyika~~p~~a~~~a~n~~~l~~de~il~~ia~alik~elydka 667 (1636)
T KOG3616|consen 593 RSYLQALMDTGQDEKAAELKE----SDGD-GLAAIQLYIKAGKPAKAARAALNDEELLADEEILEHIAAALIKGELYDKA 667 (1636)
T ss_pred HHHHHHHHhcCchhhhhhhcc----ccCc-cHHHHHHHHHcCCchHHHHhhcCHHHhhccHHHHHHHHHHHHhhHHHHhh
Confidence 345556666666555544321 1111 123455666666666665543211 124445555555555555556666
Q ss_pred HHHhhcCCCCCceeHHHHHHHHHHCCChhHHHHHhhcCCCCCc---------------------------ccHHHHHHHH
Q 007519 93 RKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNV---------------------------ISWNAMIAGY 145 (600)
Q Consensus 93 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---------------------------~~~~~l~~~~ 145 (600)
-++|+++..++.. +.+|-+-.-+-+|+++.+-.....+ ......+.+.
T Consensus 668 gdlfeki~d~dka-----le~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~~~~kaieaa 742 (1636)
T KOG3616|consen 668 GDLFEKIHDFDKA-----LECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANCLIKAIEAA 742 (1636)
T ss_pred hhHHHHhhCHHHH-----HHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhHHHHHHHH
Confidence 6666655543321 2333333333344443332221110 1111222333
Q ss_pred HhcCCHhHHHHHHHhcccCCc--hhHHHHHHHHHhcCChhHHHHHHccCCCCCcchHHHHHHHHHhcCChhHHHHHHHHH
Q 007519 146 VECCMMGEAIVLFEEMEERNV--VTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEM 223 (600)
Q Consensus 146 ~~~~~~~~A~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 223 (600)
.....|.+|..+++.+...++ .-|..+.+.|+..|+++.|.++|.+.. .++..|..|.+.|+|+.|.++-.+.
T Consensus 743 i~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~-----~~~dai~my~k~~kw~da~kla~e~ 817 (1636)
T KOG3616|consen 743 IGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEAD-----LFKDAIDMYGKAGKWEDAFKLAEEC 817 (1636)
T ss_pred hhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcc-----hhHHHHHHHhccccHHHHHHHHHHh
Confidence 344555555555555543222 234555556666666666666654332 2344455566666666666655544
Q ss_pred HhhhcCCCCCChhhHHHHHHHHHhcCChhhHHHHhcccCCCCchhHHHHHHHHHhcCChHHHHHHHhhCCC-CChhhHHH
Q 007519 224 KGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPD-RDAVAWTA 302 (600)
Q Consensus 224 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~ 302 (600)
. |.......|..-..-+-+.|++.+|+++|-.+..|+. .|.+|-+.|..+..+++..+-.. .-..+...
T Consensus 818 ~-----~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~-----aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~ 887 (1636)
T KOG3616|consen 818 H-----GPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDK-----AIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKH 887 (1636)
T ss_pred c-----CchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchH-----HHHHHHhhCcchHHHHHHHHhChhhhhHHHHH
Confidence 4 3333444444444445555666666666555554443 24455555555555555544332 11123333
Q ss_pred HHHHHHhCCChhHHHHHHH
Q 007519 303 MISGLVQNELFVEATYLFM 321 (600)
Q Consensus 303 li~~~~~~g~~~~a~~~~~ 321 (600)
+..-|-..|+...|...|-
T Consensus 888 f~~e~e~~g~lkaae~~fl 906 (1636)
T KOG3616|consen 888 FAKELEAEGDLKAAEEHFL 906 (1636)
T ss_pred HHHHHHhccChhHHHHHHH
Confidence 4444444555555544443
No 63
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.34 E-value=7.6e-09 Score=102.80 Aligned_cols=492 Identities=13% Similarity=0.047 Sum_probs=262.6
Q ss_pred CCCCcchHHHHHHHHHcCCChhHHHHHhhhcCCC----ChhhHHHHHHHHHhcCChHHHHHHhhcCCCCCceeHHHHHHH
Q 007519 38 PQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPER----NVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVG 113 (600)
Q Consensus 38 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~ 113 (600)
..||..+|.++|.-||..|+++.|- +|..|.-. +...++.++.+..+.++.+.+. +|...+|..|..+
T Consensus 21 i~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~aDtyt~Ll~a 92 (1088)
T KOG4318|consen 21 ILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPLADTYTNLLKA 92 (1088)
T ss_pred CCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCchhHHHHHHHH
Confidence 3589999999999999999999999 88888753 3457888888877888877665 7888999999999
Q ss_pred HHHCCChhHHHHHhhc----CCC---C----C---------------cccHHHHHHHHHhcCCHhHHHHHHHhccc---C
Q 007519 114 LIRNGELNEARKVFNS----MPI---K----N---------------VISWNAMIAGYVECCMMGEAIVLFEEMEE---R 164 (600)
Q Consensus 114 ~~~~~~~~~a~~~~~~----~~~---~----~---------------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~ 164 (600)
|.+.||... ++..++ +.. + . ...-..++......|-++.+.+++..+.. .
T Consensus 93 yr~hGDli~-fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~Pvsa~~ 171 (1088)
T KOG4318|consen 93 YRIHGDLIL-FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKVPVSAWN 171 (1088)
T ss_pred HHhccchHH-HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhCCccccc
Confidence 999999875 222222 111 0 0 00111222233334555555555554431 1
Q ss_pred CchhHHHHHHHHHh-cCChhHHHHHHccCCC-CCcchHHHHHHHHHhcCChhHHHHHHHHHHhhhcCCCCCChhhHHHHH
Q 007519 165 NVVTWTSMISGYCR-AGEVEEGYCLFRRMPR-KNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMI 242 (600)
Q Consensus 165 ~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~ 242 (600)
.+... ++.-+.. ...+++-..+-+...+ +++.+|..++..-...|+.+.|..++.+|.+. |++.+..-|..|+
T Consensus 172 ~p~~v--fLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~---gfpir~HyFwpLl 246 (1088)
T KOG4318|consen 172 APFQV--FLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEK---GFPIRAHYFWPLL 246 (1088)
T ss_pred chHHH--HHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHc---CCCcccccchhhh
Confidence 11111 1221111 1123333333333333 67778888888888888888888888888866 7777777666665
Q ss_pred HHHHhcCChhhHHHHhcccC----CCCchhHHHHHHHHHhcCChHHHHHHHhhCCCCChhhHHHHHHHHHhCC-----C-
Q 007519 243 NGYIRFGRLEEAQNLFDTVP----VRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNE-----L- 312 (600)
Q Consensus 243 ~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g-----~- 312 (600)
-+ .++...++.+++.|. .|+..|+...+-.+.+.|+...+... .+....+++-...-+-.| +
T Consensus 247 ~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~-----sq~~hg~tAavrsaa~rg~~a~k~l 318 (1088)
T KOG4318|consen 247 LG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEG-----SQLAHGFTAAVRSAACRGLLANKRL 318 (1088)
T ss_pred hc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccc-----cchhhhhhHHHHHHHhcccHhHHHH
Confidence 44 555555555555554 56666666666555555543222211 122222222222222222 1
Q ss_pred ----hhHHHHHHHHHHHCCCCCChhHHHHHHHHHhcccchhhhHHHHHHHhhhcCC---CchhHHHHHHHHHHhcCChHH
Q 007519 313 ----FVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESE---SDLILENCLISMYAKCGVIDN 385 (600)
Q Consensus 313 ----~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~ 385 (600)
..-.+..+.+..-.|+.....+|...... ...|.-+.+.++-..+...... .++..|..++.
T Consensus 319 ~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~l-~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lr---------- 387 (1088)
T KOG4318|consen 319 RQNLRKSVIGSTKKLFLLGTDILEAIWSMCEKL-RHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLR---------- 387 (1088)
T ss_pred HHHHHHHHHHHhhHHHHhccccchHHHHHHHHH-HHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHH----------
Confidence 11122223333333433333333333322 2245555555555444332211 12222322222
Q ss_pred HHHHHhcCCCCChhhHHHHHHHHHh---cC------------ChHHHHHHHHHHHHcC----CCC-------ChhHHHHH
Q 007519 386 AYNIFSNMVSRDLVSWNSMVMGFSH---HG------------LANETLKVFESMLESG----THP-------NSVTFLGI 439 (600)
Q Consensus 386 A~~~~~~~~~~~~~~~~~l~~~~~~---~~------------~~~~a~~~~~~m~~~~----~~p-------~~~~~~~l 439 (600)
++|.+...+..........+... .. +...+...+..+.... ..| =...-+.+
T Consensus 388 --qyFrr~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql 465 (1088)
T KOG4318|consen 388 --QYFRRIERHICSRIYYAGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQL 465 (1088)
T ss_pred --HHHHHHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHH
Confidence 23333322211110001111111 11 1111111111111100 001 01123344
Q ss_pred HHHhcccCchHHHHHHHHHHHhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhCC-----CCCCHHHHHHHHHHHhhh
Q 007519 440 LSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLP-----FEPDHRIWGALLGACGFC 514 (600)
Q Consensus 440 ~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~p~~~~~~~l~~~~~~~ 514 (600)
+..|+..-+..++...-+..... - - +..|..|+..+....+.+.|..+.++.. ..-+..-+..+..... +
T Consensus 466 ~l~l~se~n~lK~l~~~ekye~~-l-f--~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~-r 540 (1088)
T KOG4318|consen 466 HLTLNSEYNKLKILCDEEKYEDL-L-F--AGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQ-R 540 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-H-h--hhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHH-H
Confidence 45555555566665544444331 1 1 2678889999999999999999888875 2234455666666666 7
Q ss_pred hCCHHHHHHHHHHHHhh---CCCCCCcHHHHhHHHHhhCCcHHHHHHHHHHhhcCCcc
Q 007519 515 EGNAEIAEHAAKRLLEL---DPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRK 569 (600)
Q Consensus 515 ~g~~~~a~~~~~~~~~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 569 (600)
.+....+..+++...+. .|....+...+.......|+.+.-.++.+.+...|+..
T Consensus 541 ~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~e 598 (1088)
T KOG4318|consen 541 LAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSE 598 (1088)
T ss_pred hHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhh
Confidence 77888888888877762 33334555566666677888887777888888877766
No 64
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.34 E-value=6.7e-09 Score=94.30 Aligned_cols=273 Identities=10% Similarity=-0.029 Sum_probs=173.1
Q ss_pred CCCchhHHHHHHHHHhcCChHHHHHHHhhCCCCChhh---HHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHH
Q 007519 263 VRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVA---WTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLF 339 (600)
Q Consensus 263 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~ 339 (600)
+.+......+.+.+...|+.++|+..|++...-|+.+ .......+.+.|++++...+...+.... .-....|..-.
T Consensus 229 r~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~ 307 (564)
T KOG1174|consen 229 RCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHA 307 (564)
T ss_pred CccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhh
Confidence 3444555555555555555555555555544322221 1222223455666666666655555431 11111111112
Q ss_pred HHHhcccchhhhHHHHHHHhhhcCCCchhHHHHHHHHHHhcCChHHHHHHHhcCC---CCChhhHHHHHHHHHhcCChHH
Q 007519 340 GAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMV---SRDLVSWNSMVMGFSHHGLANE 416 (600)
Q Consensus 340 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~ 416 (600)
.......+.+.|..+-.+..+.+.. +...+-.-..++...|+.++|.-.|+... +-+...|..|+.+|...|++.+
T Consensus 308 ~~l~~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kE 386 (564)
T KOG1174|consen 308 QLLYDEKKFERALNFVEKCIDSEPR-NHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKE 386 (564)
T ss_pred hhhhhhhhHHHHHHHHHHHhccCcc-cchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHH
Confidence 2223344555555555544443322 23333334456677888888888888765 4577899999999999999999
Q ss_pred HHHHHHHHHHcCCCCChhHHHHHH-HHhc-ccCchHHHHHHHHHHHhhcCCCCC-cchHHHHHHHHhhcCChHHHHHHHH
Q 007519 417 TLKVFESMLESGTHPNSVTFLGIL-SACS-HAGLVSRGWELFNAMFDVYKIQPG-PEHYVSMINLLGRAGKIKEAEEFVL 493 (600)
Q Consensus 417 a~~~~~~m~~~~~~p~~~~~~~l~-~~~~-~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~ 493 (600)
|..+-+..... ++.+..+...+. ..|. ...--++|..++++.. .+.|+ ....+.+++.+...|+.+++..+++
T Consensus 387 A~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L---~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe 462 (564)
T KOG1174|consen 387 ANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSL---KINPIYTPAVNLIAELCQVEGPTKDIIKLLE 462 (564)
T ss_pred HHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhh---ccCCccHHHHHHHHHHHHhhCccchHHHHHH
Confidence 98887776654 445555555442 3333 2334578889888876 45775 6677888999999999999999998
Q ss_pred hCC-CCCCHHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCCCcHHHH
Q 007519 494 RLP-FEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVL 542 (600)
Q Consensus 494 ~~~-~~p~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 542 (600)
+.. ..||....+.+...+. ..+.+.+|...|..++.++|++..+...+
T Consensus 463 ~~L~~~~D~~LH~~Lgd~~~-A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl 511 (564)
T KOG1174|consen 463 KHLIIFPDVNLHNHLGDIMR-AQNEPQKAMEYYYKALRQDPKSKRTLRGL 511 (564)
T ss_pred HHHhhccccHHHHHHHHHHH-HhhhHHHHHHHHHHHHhcCccchHHHHHH
Confidence 864 6788888888888888 88999999999999999999665554443
No 65
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.27 E-value=3e-08 Score=88.32 Aligned_cols=439 Identities=10% Similarity=0.038 Sum_probs=253.6
Q ss_pred HHHHHhcCChhhHHHHhccCCCCC--c--chHHHHHHHHHcCCChhHHHHHhhhcCC---CChhhHHHHHHHHHhcCChH
Q 007519 18 ITKYSKRGFIDEAKALFQLMPQRN--V--VSYNAMLSGFLQNGRLSEARRLFEEMPE---RNVVSWTAMICGLADAGRVC 90 (600)
Q Consensus 18 ~~~~~~~g~~~~A~~~~~~~~~~~--~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~ 90 (600)
+.-+....++..|+.+++.-..-+ . .+-.-+..++...|++++|...|+.+.+ ++...+-.|.-++.-.|.+.
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~ 108 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYI 108 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHH
Confidence 666777889999999998765411 1 2233456777889999999999998875 55566666766667789999
Q ss_pred HHHHHhhcCCCCCceeHHHHHHHHHHCCChhHHHHHhhcCCCCCcccHHHHHHHHHhcCCHhHHHHHHHhccc--CCchh
Q 007519 91 EARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEE--RNVVT 168 (600)
Q Consensus 91 ~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~ 168 (600)
+|..+-.+..+ ++-.-..+...-.+.|+-++-..+.+.+.+.. ..-.+|.......-.+.+|++++..... |+-..
T Consensus 109 eA~~~~~ka~k-~pL~~RLlfhlahklndEk~~~~fh~~LqD~~-EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~a 186 (557)
T KOG3785|consen 109 EAKSIAEKAPK-TPLCIRLLFHLAHKLNDEKRILTFHSSLQDTL-EDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIA 186 (557)
T ss_pred HHHHHHhhCCC-ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhH-HHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhh
Confidence 99988876654 22223344555566777776666655554322 3344555555556678888888888774 33333
Q ss_pred HHH-HHHHHHhcCChhHHHHHHccCCC--CC-cchHHHHHHHHHhcCChhHHHHHHHHHHhhhcCCCCCChhhHHHHHHH
Q 007519 169 WTS-MISGYCRAGEVEEGYCLFRRMPR--KN-VVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMING 244 (600)
Q Consensus 169 ~~~-l~~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 244 (600)
.+. +.-+|.+..-++-+.++++--.+ || ..+-|...-...+.=.-..|.+-.+++... +.. . | ..+.-
T Consensus 187 lNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN---~~~-~---~-~f~~~ 258 (557)
T KOG3785|consen 187 LNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADN---IDQ-E---Y-PFIEY 258 (557)
T ss_pred hHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhc---ccc-c---c-hhHHH
Confidence 343 33345666666666666554432 32 223333332222322223333333333321 111 0 1 11111
Q ss_pred HHh-----cCChhhHHHHhcccCCCCchhHHHHHHHHHhcCChHHHHHHHhhCCCCChhhHHHHHHHHHhCC-------C
Q 007519 245 YIR-----FGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNE-------L 312 (600)
Q Consensus 245 ~~~-----~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g-------~ 312 (600)
+++ ..+-+.|++++-.+...=+...-.|+--|.+.+++.+|..+..++...++.-|-.-.-.++..| .
T Consensus 259 l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSreH 338 (557)
T KOG3785|consen 259 LCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETGSREH 338 (557)
T ss_pred HHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHHH
Confidence 222 2334566666655554445555556666777777777777777665433332222111222222 2
Q ss_pred hhHHHHHHHHHHHCCCCCCh-hHHHHHHHHHhcccchhhhHHHHHHHhhhcCCCchhHHHHHHHHHHhcCChHHHHHHHh
Q 007519 313 FVEATYLFMEMRAHGVPPLN-ATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFS 391 (600)
Q Consensus 313 ~~~a~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 391 (600)
..-|.+.|+..-..+..-|. ..-.++..++.-...++.+.-++..+...-...|...+ .+.++++..|++.+|+++|-
T Consensus 339 lKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~atgny~eaEelf~ 417 (557)
T KOG3785|consen 339 LKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQAKLATGNYVEAEELFI 417 (557)
T ss_pred HHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-HHHHHHHHhcChHHHHHHHh
Confidence 33455555544444433222 12233344445555667777666666655444455444 47788888899999999988
Q ss_pred cCCCCC---hhhHH-HHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHH-HHHhcccCchHHHHHHHHHHHhhcCCC
Q 007519 392 NMVSRD---LVSWN-SMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGI-LSACSHAGLVSRGWELFNAMFDVYKIQ 466 (600)
Q Consensus 392 ~~~~~~---~~~~~-~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l-~~~~~~~g~~~~a~~~~~~~~~~~~~~ 466 (600)
.+..|+ ..+|. .+..+|.+.+.++-|+.++-++. -+.+..+...+ ..-|.+.+.+=-|-+.|..+. ..+
T Consensus 418 ~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~---t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE---~lD 491 (557)
T KOG3785|consen 418 RISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKTN---TPSERFSLLQLIANDCYKANEFYYAAKAFDELE---ILD 491 (557)
T ss_pred hhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcC---CchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHH---ccC
Confidence 887543 34554 45677888888888877765543 23333444443 366777888777777777765 347
Q ss_pred CCcchHH
Q 007519 467 PGPEHYV 473 (600)
Q Consensus 467 p~~~~~~ 473 (600)
|++..|.
T Consensus 492 P~pEnWe 498 (557)
T KOG3785|consen 492 PTPENWE 498 (557)
T ss_pred CCccccC
Confidence 7777664
No 66
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.26 E-value=5.7e-10 Score=93.44 Aligned_cols=161 Identities=20% Similarity=0.191 Sum_probs=126.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCC-CcchHHHHHHH
Q 007519 401 WNSMVMGFSHHGLANETLKVFESMLESGTHPN-SVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQP-GPEHYVSMINL 478 (600)
Q Consensus 401 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~ 478 (600)
...+...|...|+...|..-+++..+. .|+ ..++..+...|.+.|..+.|.+.|+++.. +.| +-.+.|..+..
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~--DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls---l~p~~GdVLNNYG~F 112 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEH--DPSYYLAHLVRAHYYQKLGENDLADESYRKALS---LAPNNGDVLNNYGAF 112 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHh---cCCCccchhhhhhHH
Confidence 344566788888888888888888875 444 45677777778888888888888888874 467 57788888888
Q ss_pred HhhcCChHHHHHHHHhCCCCCC----HHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCCCcHHHHhHHHHhhCCcHH
Q 007519 479 LGRAGKIKEAEEFVLRLPFEPD----HRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVE 554 (600)
Q Consensus 479 ~~~~g~~~~A~~~~~~~~~~p~----~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 554 (600)
+|..|++++|...|++....|. ..+|.++..+.. +.|+.+.|...++++++.+|+++.....+.......|++-.
T Consensus 113 LC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal-~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~ 191 (250)
T COG3063 113 LCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCAL-KAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAP 191 (250)
T ss_pred HHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHh-hcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchH
Confidence 8888888888888888754443 456666666666 88888888888888888888888888888888888888888
Q ss_pred HHHHHHHHhhcCC
Q 007519 555 EHKLRMDMGLKGV 567 (600)
Q Consensus 555 A~~~~~~~~~~~~ 567 (600)
|..+++.....+.
T Consensus 192 Ar~~~~~~~~~~~ 204 (250)
T COG3063 192 ARLYLERYQQRGG 204 (250)
T ss_pred HHHHHHHHHhccc
Confidence 8887777666554
No 67
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.24 E-value=2.6e-08 Score=97.89 Aligned_cols=122 Identities=23% Similarity=0.191 Sum_probs=79.0
Q ss_pred HHHHHHhcccCchHHHHHHHHHHHhhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHhCC-CCCC-HHHHHHHHHHHhh
Q 007519 437 LGILSACSHAGLVSRGWELFNAMFDVYKIQP-GPEHYVSMINLLGRAGKIKEAEEFVLRLP-FEPD-HRIWGALLGACGF 513 (600)
Q Consensus 437 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~ 513 (600)
......+...+..++|..++.++.. +.| ....|...+..+...|.+++|.+.|.... ..|+ +....++...+.
T Consensus 654 llaa~~~~~~~~~~~a~~CL~Ea~~---~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~ll- 729 (799)
T KOG4162|consen 654 LLAADLFLLSGNDDEARSCLLEASK---IDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLL- 729 (799)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHh---cchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHH-
Confidence 3344455566666666666666553 334 45566666667777777777777766653 5554 345555555555
Q ss_pred hhCCHHHHHH--HHHHHHhhCCCCCCcHHHHhHHHHhhCCcHHHHHHHHHH
Q 007519 514 CEGNAEIAEH--AAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDM 562 (600)
Q Consensus 514 ~~g~~~~a~~--~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 562 (600)
..|+...|.. ++..+++++|.++.+|..|+.++...|+.+.|.+.+...
T Consensus 730 e~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa 780 (799)
T KOG4162|consen 730 ELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAA 780 (799)
T ss_pred HhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHH
Confidence 6776666666 777777778877788888888877778877777755543
No 68
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.24 E-value=2.5e-10 Score=100.10 Aligned_cols=188 Identities=14% Similarity=0.086 Sum_probs=101.6
Q ss_pred HHHHHHhcCChHHHHHHHhcCC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccCch
Q 007519 373 LISMYAKCGVIDNAYNIFSNMV---SRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLV 449 (600)
Q Consensus 373 l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~ 449 (600)
|...|.+.+++..|+.+|.+.. +-|+....-+...+-..++.++|.++++...+.. +.+.....++...|...++.
T Consensus 262 LskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~P 340 (478)
T KOG1129|consen 262 LSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNP 340 (478)
T ss_pred HHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCCh
Confidence 3344444444444444444433 1222223334444555555666666666655532 33344444444555555666
Q ss_pred HHHHHHHHHHHhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhCC---CCCC--HHHHHHHHHHHhhhhCCHHHHHHH
Q 007519 450 SRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLP---FEPD--HRIWGALLGACGFCEGNAEIAEHA 524 (600)
Q Consensus 450 ~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~p~--~~~~~~l~~~~~~~~g~~~~a~~~ 524 (600)
+.|.++++++... |+ .++..|+.++-+|.-.+++|-++.-|++.. ..|+ ..+|.++..... ..||...|.+.
T Consensus 341 E~AlryYRRiLqm-G~-~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV-~iGD~nlA~rc 417 (478)
T KOG1129|consen 341 EMALRYYRRILQM-GA-QSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAV-TIGDFNLAKRC 417 (478)
T ss_pred HHHHHHHHHHHHh-cC-CChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEE-eccchHHHHHH
Confidence 6666666666554 32 244556666666666666666665555542 1222 345555555555 56666666666
Q ss_pred HHHHHhhCCCCCCcHHHHhHHHHhhCCcHHHHHHHHHHhh
Q 007519 525 AKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGL 564 (600)
Q Consensus 525 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 564 (600)
|+-++..+|++...++.|+-.-.+.|++++|..++...+.
T Consensus 418 frlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 418 FRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred HHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 6666666666666666666666666666666666655443
No 69
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.24 E-value=1.5e-07 Score=91.75 Aligned_cols=246 Identities=16% Similarity=0.172 Sum_probs=153.8
Q ss_pred HHHHhcCChHHHHHHHhhCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhcccchhhhHH
Q 007519 274 DGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQ 353 (600)
Q Consensus 274 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~ 353 (600)
..+...|+++.|+..|-+... .-..+.+-....+|.+|+.+++.++.+. .-..-|..+...|+..|+++.|.+
T Consensus 714 ~hl~~~~q~daainhfiea~~-----~~kaieaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~ 786 (1636)
T KOG3616|consen 714 DHLEQIGQLDAAINHFIEANC-----LIKAIEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEE 786 (1636)
T ss_pred HHHHHHHhHHHHHHHHHHhhh-----HHHHHHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHH
Confidence 344455666666655544321 1223445566778888888888777653 334456667778888888888888
Q ss_pred HHHHHhhhcCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCC--hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 007519 354 IHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRD--LVSWNSMVMGFSHHGLANETLKVFESMLESGTHP 431 (600)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p 431 (600)
+|.+. ..++-.|.+|.+.|+|+.|.++-.+...|. +..|-+-..-+-.+|++.+|.+++-... .|
T Consensus 787 lf~e~---------~~~~dai~my~k~~kw~da~kla~e~~~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p 853 (1636)
T KOG3616|consen 787 LFTEA---------DLFKDAIDMYGKAGKWEDAFKLAEECHGPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EP 853 (1636)
T ss_pred HHHhc---------chhHHHHHHHhccccHHHHHHHHHHhcCchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----Cc
Confidence 87542 234566778888888888888887776553 3445555555677888888887775542 44
Q ss_pred ChhHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 007519 432 NSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGAC 511 (600)
Q Consensus 432 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~ 511 (600)
+. .+..|-+.|..+..+++.++-.. ..-..+...+..-|...|+...|..-|-+.. .|...++.|
T Consensus 854 ~~-----aiqmydk~~~~ddmirlv~k~h~----d~l~dt~~~f~~e~e~~g~lkaae~~flea~------d~kaavnmy 918 (1636)
T KOG3616|consen 854 DK-----AIQMYDKHGLDDDMIRLVEKHHG----DHLHDTHKHFAKELEAEGDLKAAEEHFLEAG------DFKAAVNMY 918 (1636)
T ss_pred hH-----HHHHHHhhCcchHHHHHHHHhCh----hhhhHHHHHHHHHHHhccChhHHHHHHHhhh------hHHHHHHHh
Confidence 43 35667778888877777664421 1113456667788888888888888776554 455566666
Q ss_pred hhhhCCHHHHHHHHHHHHhhCCCCCCcHHHHhHHHHhhCCcHHHHHHHH
Q 007519 512 GFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRM 560 (600)
Q Consensus 512 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 560 (600)
. .++-+++|-++.+. ....|..-+....|+-.--| +.|.+++.
T Consensus 919 k-~s~lw~dayriakt---egg~n~~k~v~flwaksigg--daavklln 961 (1636)
T KOG3616|consen 919 K-ASELWEDAYRIAKT---EGGANAEKHVAFLWAKSIGG--DAAVKLLN 961 (1636)
T ss_pred h-hhhhHHHHHHHHhc---cccccHHHHHHHHHHHhhCc--HHHHHHHH
Confidence 6 66777766655432 22334444444444433334 46676554
No 70
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.24 E-value=3.1e-10 Score=99.51 Aligned_cols=236 Identities=11% Similarity=0.059 Sum_probs=196.6
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhcccchhhhHHHHHHHhhhcCCCchhHHHHHHHHHHh
Q 007519 300 WTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAK 379 (600)
Q Consensus 300 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 379 (600)
-+.+.++|.+.|-+.+|...|+.-++. .|-..||..|-++|.+...+..|..++..-.+. ++-++-........+..
T Consensus 226 k~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 226 KQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHH
Confidence 467889999999999999999998886 677889999999999999999999999876653 23345555567778888
Q ss_pred cCChHHHHHHHhcCC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccCchHHHHHHH
Q 007519 380 CGVIDNAYNIFSNMV---SRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELF 456 (600)
Q Consensus 380 ~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 456 (600)
.++.++|.++|+... +.++.....+...|.-.++++-|+..++++.+.|+ -+...|+.+.-+|...+++|-++..|
T Consensus 303 m~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred HHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcchhhhHHHH
Confidence 899999999999886 44666677777888899999999999999999984 56677888999999999999999999
Q ss_pred HHHHhhcCCCCC--cchHHHHHHHHhhcCChHHHHHHHHhCC-CCCC-HHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhC
Q 007519 457 NAMFDVYKIQPG--PEHYVSMINLLGRAGKIKEAEEFVLRLP-FEPD-HRIWGALLGACGFCEGNAEIAEHAAKRLLELD 532 (600)
Q Consensus 457 ~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~ 532 (600)
+++... ...|+ ..+|..|.......|++.-|.+.|+-.. ..|+ ...++++.-.-. +.|++++|..++..+..+.
T Consensus 382 ~RAlst-at~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~-r~G~i~~Arsll~~A~s~~ 459 (478)
T KOG1129|consen 382 QRALST-ATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAA-RSGDILGARSLLNAAKSVM 459 (478)
T ss_pred HHHHhh-ccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHh-hcCchHHHHHHHHHhhhhC
Confidence 999875 44454 7789999999999999999999998865 4444 567888877777 9999999999999999999
Q ss_pred CCCCCcHHH
Q 007519 533 PLNAPAHVV 541 (600)
Q Consensus 533 p~~~~~~~~ 541 (600)
|+-......
T Consensus 460 P~m~E~~~N 468 (478)
T KOG1129|consen 460 PDMAEVTTN 468 (478)
T ss_pred ccccccccc
Confidence 954444333
No 71
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.24 E-value=1.5e-08 Score=101.90 Aligned_cols=278 Identities=12% Similarity=0.056 Sum_probs=157.1
Q ss_pred HHHHHHhhCCC---CChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhcccchhhhHHHHHHHhh
Q 007519 284 NAYYLFHNMPD---RDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMK 360 (600)
Q Consensus 284 ~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 360 (600)
.|+..+....+ .+...||.|.-. ...|.+.-+...|-+-... -+....+|..+--.|....+++.|...+.....
T Consensus 801 ~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~s-ep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qS 878 (1238)
T KOG1127|consen 801 TAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFS-EPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQS 878 (1238)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhc-cccchhheeccceeEEecccHHHhhHHHHhhhh
Confidence 44455544332 455566655544 4445666665555544433 133445566666666677777888777776665
Q ss_pred hcCCCchhHHHHHHHHHHhcCChHHHHHHHhcCC--------CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHc-----
Q 007519 361 TESESDLILENCLISMYAKCGVIDNAYNIFSNMV--------SRDLVSWNSMVMGFSHHGLANETLKVFESMLES----- 427 (600)
Q Consensus 361 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----- 427 (600)
..+. +...+-.........|+.-++..+|..-. -++..-|-.........|+.++-+..-+++-..
T Consensus 879 LdP~-nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~ 957 (1238)
T KOG1127|consen 879 LDPL-NLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALS 957 (1238)
T ss_pred cCch-hhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHH
Confidence 4332 22223222223334566666666665421 234444444444455666655544433332211
Q ss_pred ----CCCCChhHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCCCcchHH----HHHHHHhhcCChHHHHHHHHhCCCCC
Q 007519 428 ----GTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYV----SMINLLGRAGKIKEAEEFVLRLPFEP 499 (600)
Q Consensus 428 ----~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~----~l~~~~~~~g~~~~A~~~~~~~~~~p 499 (600)
|.+.....|........+.+.+..|.+...++..-.....+...|+ .+.+.+...|.++.|...+.......
T Consensus 958 ~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a~~~~~~ev 1037 (1238)
T KOG1127|consen 958 YYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKASWKEWMEV 1037 (1238)
T ss_pred HHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhhhcccchhH
Confidence 3344456676666666677777776666665543222233444444 56677888899998888877766444
Q ss_pred CHHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCCC---cHHHHhHHHHhhCCcHHHHH-HHHHHhhcC
Q 007519 500 DHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAP---AHVVLCNIYAASGRHVEEHK-LRMDMGLKG 566 (600)
Q Consensus 500 ~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~A~~-~~~~~~~~~ 566 (600)
+......-+..+ -.|+++++...|++++.+.-++.. ....++......|..+.|.. +++...-.+
T Consensus 1038 dEdi~gt~l~lF--fkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~lLfe~~~ls~ 1106 (1238)
T KOG1127|consen 1038 DEDIRGTDLTLF--FKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQFLLFEVKSLSK 1106 (1238)
T ss_pred HHHHhhhhHHHH--HHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHHHHHHHHHhCc
Confidence 444444333333 478999999999999997654443 34455555667778888888 555444333
No 72
>PRK12370 invasion protein regulator; Provisional
Probab=99.23 E-value=2.7e-09 Score=109.26 Aligned_cols=244 Identities=12% Similarity=0.004 Sum_probs=169.4
Q ss_pred ChhHHHHHHHHHHHCCCCCChh-HHHHHHHHHh---------cccchhhhHHHHHHHhhhcCCCchhHHHHHHHHHHhcC
Q 007519 312 LFVEATYLFMEMRAHGVPPLNA-TFSVLFGAAG---------ATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCG 381 (600)
Q Consensus 312 ~~~~a~~~~~~m~~~g~~p~~~-~~~~l~~~~~---------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 381 (600)
..++|+..|++..+. .|+.. .+..+..++. ..++.+.|...++.+.+.... +...+..+...+...|
T Consensus 276 ~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~-~~~a~~~lg~~~~~~g 352 (553)
T PRK12370 276 SLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHN-NPQALGLLGLINTIHS 352 (553)
T ss_pred HHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcc
Confidence 356778888877764 45443 3333333322 234467888888877776543 5666777888888999
Q ss_pred ChHHHHHHHhcCC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChh-HHHHHHHHhcccCchHHHHHHHH
Q 007519 382 VIDNAYNIFSNMV---SRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSV-TFLGILSACSHAGLVSRGWELFN 457 (600)
Q Consensus 382 ~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~ 457 (600)
++++|...|++.. +.+...+..+..++...|++++|+..+++..+. .|+.. .+..++..+...|++++|...++
T Consensus 353 ~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l--~P~~~~~~~~~~~~~~~~g~~eeA~~~~~ 430 (553)
T PRK12370 353 EYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKL--DPTRAAAGITKLWITYYHTGIDDAIRLGD 430 (553)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHhccCHHHHHHHHH
Confidence 9999999999876 445678888899999999999999999999875 55543 33334445666899999999999
Q ss_pred HHHhhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHhCC-CCCCHHHHHH-HHHHHhhhhCCHHHHHHHHHHHHhhCCC
Q 007519 458 AMFDVYKIQP-GPEHYVSMINLLGRAGKIKEAEEFVLRLP-FEPDHRIWGA-LLGACGFCEGNAEIAEHAAKRLLELDPL 534 (600)
Q Consensus 458 ~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~-l~~~~~~~~g~~~~a~~~~~~~~~~~p~ 534 (600)
++... ..| ++..+..++.+|...|++++|...+.++. ..|+...... +...+. ..| +.|...++++++..-.
T Consensus 431 ~~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g--~~a~~~l~~ll~~~~~ 505 (553)
T PRK12370 431 ELRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYC-QNS--ERALPTIREFLESEQR 505 (553)
T ss_pred HHHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHh-ccH--HHHHHHHHHHHHHhhH
Confidence 98764 235 45567888999999999999999998875 5565554444 444445 555 4777777777763322
Q ss_pred CCCcHHHHhHHHHhhCCcHHHHHHHHHHhhcC
Q 007519 535 NAPAHVVLCNIYAASGRHVEEHKLRMDMGLKG 566 (600)
Q Consensus 535 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 566 (600)
.+.....+..++.-.|+-+.+..+ +.+.+.|
T Consensus 506 ~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 506 IDNNPGLLPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred hhcCchHHHHHHHHHhhhHHHHHH-HHhhccc
Confidence 222223366667778887777777 6665543
No 73
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.23 E-value=1.2e-09 Score=106.45 Aligned_cols=191 Identities=19% Similarity=0.217 Sum_probs=140.6
Q ss_pred HHHHHHHhcCChHHHHHHHhcCC-------CC----ChhhHHHHHHHHHhcCChHHHHHHHHHHHHc-----CCC-CCh-
Q 007519 372 CLISMYAKCGVIDNAYNIFSNMV-------SR----DLVSWNSMVMGFSHHGLANETLKVFESMLES-----GTH-PNS- 433 (600)
Q Consensus 372 ~l~~~~~~~~~~~~A~~~~~~~~-------~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-----~~~-p~~- 433 (600)
.+...|...+++.+|..+|+++. .+ -..+++.|..+|...|++++|..+++...+- |.. |..
T Consensus 246 ~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~ 325 (508)
T KOG1840|consen 246 ILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVA 325 (508)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHH
Confidence 45667777788877777777664 11 2346677777888888888887777765432 212 222
Q ss_pred hHHHHHHHHhcccCchHHHHHHHHHHHhhcC--CCCC----cchHHHHHHHHhhcCChHHHHHHHHhCC---------CC
Q 007519 434 VTFLGILSACSHAGLVSRGWELFNAMFDVYK--IQPG----PEHYVSMINLLGRAGKIKEAEEFVLRLP---------FE 498 (600)
Q Consensus 434 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~---------~~ 498 (600)
..++.+...|...+++++|..++++..+.+. +.++ ..+++.|+..|...|++++|.++++++. ..
T Consensus 326 ~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~ 405 (508)
T KOG1840|consen 326 AQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKD 405 (508)
T ss_pred HHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcC
Confidence 2355666788899999999999988776543 2222 5678999999999999999999998863 22
Q ss_pred CC-HHHHHHHHHHHhhhhCCHHHHHHHHHHHHh----hCCCCC---CcHHHHhHHHHhhCCcHHHHHHHHHHh
Q 007519 499 PD-HRIWGALLGACGFCEGNAEIAEHAAKRLLE----LDPLNA---PAHVVLCNIYAASGRHVEEHKLRMDMG 563 (600)
Q Consensus 499 p~-~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~----~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~ 563 (600)
+. ...++.+...|. ..+++.+|.++|.+.+. ..|++| .+|..|+.+|.+.|++++|.++...+.
T Consensus 406 ~~~~~~l~~la~~~~-~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 406 YGVGKPLNQLAEAYE-ELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred hhhhHHHHHHHHHHH-HhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 32 456777888887 89999999999998876 345443 668899999999999999999777665
No 74
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.22 E-value=3.4e-07 Score=90.56 Aligned_cols=243 Identities=14% Similarity=0.099 Sum_probs=138.7
Q ss_pred HHhcCChhhHHHHhccCCCCCcchHHHHHHHHHcCCChhHHHHHhhhcCC------------CChhhHHHHHHHHHhcCC
Q 007519 21 YSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPE------------RNVVSWTAMICGLADAGR 88 (600)
Q Consensus 21 ~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~------------~~~~~~~~l~~~~~~~g~ 88 (600)
|.--|+.+.|.+..+.+ .+...|..|...+.+.++++-|.-.+-.|.. .+..+-..+.-.....|.
T Consensus 738 yvtiG~MD~AfksI~~I--kS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvLAieLgM 815 (1416)
T KOG3617|consen 738 YVTIGSMDAAFKSIQFI--KSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVLAIELGM 815 (1416)
T ss_pred EEEeccHHHHHHHHHHH--hhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHHHHHHhh
Confidence 44557777777766666 4556688888888888888777777666652 121333344444567788
Q ss_pred hHHHHHHhhcCCCCCceeHHHHHHHHHHCCChhHHHHHhhcCCC-CCcccHHHHHHHHHhcCCHhHHHHHHHhcccCCch
Q 007519 89 VCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPI-KNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVV 167 (600)
Q Consensus 89 ~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 167 (600)
.++|..+|++..+ |..|=+.|-..|.+++|+++.+.--. .-..||..-..-+-..+|++.|.+.|++...+-..
T Consensus 816 lEeA~~lYr~ckR-----~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafe 890 (1416)
T KOG3617|consen 816 LEEALILYRQCKR-----YDLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFE 890 (1416)
T ss_pred HHHHHHHHHHHHH-----HHHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHH
Confidence 8888888887654 33445566677888888887765543 22356777777777778888888888765433222
Q ss_pred hHHHHHHHHHhcCChhHHHHHHccCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHh
Q 007519 168 TWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIR 247 (600)
Q Consensus 168 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 247 (600)
++..|. .+......+.+++.. ...|......+-..|+.+.|+.++...+. |..+++..|-
T Consensus 891 v~rmL~------e~p~~~e~Yv~~~~d--~~L~~WWgqYlES~GemdaAl~~Y~~A~D------------~fs~VrI~C~ 950 (1416)
T KOG3617|consen 891 VFRMLK------EYPKQIEQYVRRKRD--ESLYSWWGQYLESVGEMDAALSFYSSAKD------------YFSMVRIKCI 950 (1416)
T ss_pred HHHHHH------hChHHHHHHHHhccc--hHHHHHHHHHHhcccchHHHHHHHHHhhh------------hhhheeeEee
Confidence 222221 122333333333332 23344444445555666666666655543 2344444445
Q ss_pred cCChhhHHHHhcccCCCCchhHHHHHHHHHhcCChHHHHHHHhhC
Q 007519 248 FGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNM 292 (600)
Q Consensus 248 ~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 292 (600)
.|+.++|-++-++- .|......+...|-..|++.+|..+|.+.
T Consensus 951 qGk~~kAa~iA~es--gd~AAcYhlaR~YEn~g~v~~Av~FfTrA 993 (1416)
T KOG3617|consen 951 QGKTDKAARIAEES--GDKAACYHLARMYENDGDVVKAVKFFTRA 993 (1416)
T ss_pred ccCchHHHHHHHhc--ccHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 55555555544432 23333444455555555555555555443
No 75
>PF13041 PPR_2: PPR repeat family
Probab=99.22 E-value=3.9e-11 Score=77.99 Aligned_cols=50 Identities=32% Similarity=0.537 Sum_probs=47.2
Q ss_pred CChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhc
Q 007519 295 RDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGA 344 (600)
Q Consensus 295 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 344 (600)
||+.+||.+|.+|++.|++++|.++|++|.+.|+.||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 68899999999999999999999999999999999999999999999874
No 76
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.20 E-value=5.1e-08 Score=96.13 Aligned_cols=201 Identities=12% Similarity=0.092 Sum_probs=135.4
Q ss_pred cchhHHHHHHHhcCChhhHHHHhccCCC-------------CCcchHHHHHHHHHcCCChhHHHHHhhhcCCCChhhHHH
Q 007519 12 VHLTSSITKYSKRGFIDEAKALFQLMPQ-------------RNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTA 78 (600)
Q Consensus 12 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 78 (600)
..|..++.+|.+..+.+-|.-.+..|.. ++ ..=..........|.+++|+.+|.+-.+-| .
T Consensus 758 ~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR~D-----L 831 (1416)
T KOG3617|consen 758 SVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLAIELGMLEEALILYRQCKRYD-----L 831 (1416)
T ss_pred HHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHHHHHhhHHHHHHHHHHHHHHH-----H
Confidence 4588889999998888888777777752 22 222223333457899999999999876533 5
Q ss_pred HHHHHHhcCChHHHHHHhhcCCC-CCceeHHHHHHHHHHCCChhHHHHHhhcCCC-----------------------CC
Q 007519 79 MICGLADAGRVCEARKLFEEMPE-RNVVSWNSMVVGLIRNGELNEARKVFNSMPI-----------------------KN 134 (600)
Q Consensus 79 l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----------------------~~ 134 (600)
|=+.|-..|++++|.++-+.-.+ .=..+|...+..+...+|.+.|++.|++... .|
T Consensus 832 lNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d 911 (1416)
T KOG3617|consen 832 LNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRD 911 (1416)
T ss_pred HHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccc
Confidence 55667778999999888775444 2234677778888888899999998887743 23
Q ss_pred cccHHHHHHHHHhcCCHhHHHHHHHhcccCCchhHHHHHHHHHhcCChhHHHHHHccCCCCCcchHHHHHHHHHhcCChh
Q 007519 135 VISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHK 214 (600)
Q Consensus 135 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 214 (600)
...|.-...-+-..|+.+.|..+|...+ -|-+++...|-.|+.++|-++-++- .|..+...+.+.|-..|++.
T Consensus 912 ~~L~~WWgqYlES~GemdaAl~~Y~~A~-----D~fs~VrI~C~qGk~~kAa~iA~es--gd~AAcYhlaR~YEn~g~v~ 984 (1416)
T KOG3617|consen 912 ESLYSWWGQYLESVGEMDAALSFYSSAK-----DYFSMVRIKCIQGKTDKAARIAEES--GDKAACYHLARMYENDGDVV 984 (1416)
T ss_pred hHHHHHHHHHHhcccchHHHHHHHHHhh-----hhhhheeeEeeccCchHHHHHHHhc--ccHHHHHHHHHHhhhhHHHH
Confidence 3333333444445666676766666543 2445556666667777776665543 35566677788888888888
Q ss_pred HHHHHHHHHHh
Q 007519 215 ESLLLFIEMKG 225 (600)
Q Consensus 215 ~a~~~~~~~~~ 225 (600)
+|...|.+...
T Consensus 985 ~Av~FfTrAqa 995 (1416)
T KOG3617|consen 985 KAVKFFTRAQA 995 (1416)
T ss_pred HHHHHHHHHHH
Confidence 88888777653
No 77
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.19 E-value=3.7e-08 Score=96.84 Aligned_cols=366 Identities=12% Similarity=0.069 Sum_probs=207.7
Q ss_pred CCchhHHHHHHHHHhcCChhHHHHHHccCCC---CCcchHHHHHHHHHhcCChhHHHHHHHHHHhhhcCCCCCC-hhhHH
Q 007519 164 RNVVTWTSMISGYCRAGEVEEGYCLFRRMPR---KNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCN-VQSCN 239 (600)
Q Consensus 164 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~~ 239 (600)
.|...|..|.-+..+.|++..+.+.|++... .....|+.+...+...|.-..|+.+++.-... ...|+ ...+.
T Consensus 321 nd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~---~~~ps~~s~~L 397 (799)
T KOG4162|consen 321 NDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKK---SEQPSDISVLL 397 (799)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhccc---ccCCCcchHHH
Confidence 4566666666777777777777777776653 23445667777777777777777777666543 11132 33333
Q ss_pred HHHHHHH-hcCChhhHHHHhcccC--------CCCchhHHHHHHHHHhc-----------CChHHHHHHHhhCCC---CC
Q 007519 240 SMINGYI-RFGRLEEAQNLFDTVP--------VRDEISWTSMIDGYLSV-----------GQVSNAYYLFHNMPD---RD 296 (600)
Q Consensus 240 ~l~~~~~-~~~~~~~a~~~~~~~~--------~~~~~~~~~l~~~~~~~-----------~~~~~A~~~~~~~~~---~~ 296 (600)
..-+.|. +.+..++++.+-.++. ...+..+..+.-+|... ....++++.+++..+ .|
T Consensus 398 masklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~d 477 (799)
T KOG4162|consen 398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTD 477 (799)
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 3333333 3344555444433332 11223333333333221 122334444444422 22
Q ss_pred hhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhcccchhhhHHHHHHHh-hhcCCCc---------
Q 007519 297 AVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLM-KTESESD--------- 366 (600)
Q Consensus 297 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~~~~~--------- 366 (600)
+.+...+.--|+..++.+.|++..++..+.+-.-+...|..+.-.+...+++..|..+.+... +.|....
T Consensus 478 p~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~ 557 (799)
T KOG4162|consen 478 PLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIE 557 (799)
T ss_pred chHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhh
Confidence 222222333345556666666666666665445555555555555555566666665555322 2222000
Q ss_pred ---------hhHHHHHHHHHHh------c-----------------CChHHHHHHHhc-----------------CC---
Q 007519 367 ---------LILENCLISMYAK------C-----------------GVIDNAYNIFSN-----------------MV--- 394 (600)
Q Consensus 367 ---------~~~~~~l~~~~~~------~-----------------~~~~~A~~~~~~-----------------~~--- 394 (600)
..+...++..+-. . ++..+|...... ++
T Consensus 558 ~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~ 637 (799)
T KOG4162|consen 558 LTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSST 637 (799)
T ss_pred hhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCccc
Confidence 0011111111100 0 000000000000 00
Q ss_pred ---CCC------hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccCchHHHHHHHHHHHhhcCC
Q 007519 395 ---SRD------LVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKI 465 (600)
Q Consensus 395 ---~~~------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 465 (600)
.|+ ...|......+.+.++.++|...+.+.... .+-....|......+...|...+|.+.|..+. .+
T Consensus 638 ~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~-~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al---~l 713 (799)
T KOG4162|consen 638 VLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI-DPLSASVYYLRGLLLEVKGQLEEAKEAFLVAL---AL 713 (799)
T ss_pred ccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc-chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHH---hc
Confidence 111 124555666778888899999888888764 23444556655677788899999999998886 56
Q ss_pred CC-CcchHHHHHHHHhhcCChHHHHH--HHHhCC-CCC-CHHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCCC
Q 007519 466 QP-GPEHYVSMINLLGRAGKIKEAEE--FVLRLP-FEP-DHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAP 537 (600)
Q Consensus 466 ~p-~~~~~~~l~~~~~~~g~~~~A~~--~~~~~~-~~p-~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 537 (600)
+| ++.+..+++.++.+.|+..-|.. ++..+. ..| +...|..+...+. +.|+.++|.+.|..+.++++.+|.
T Consensus 714 dP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k-~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 714 DPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFK-KLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred CCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHH-HccchHHHHHHHHHHHhhccCCCc
Confidence 88 48889999999999998777776 776664 556 5668888888888 999999999999999998887664
No 78
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.19 E-value=8.1e-08 Score=92.59 Aligned_cols=146 Identities=12% Similarity=0.128 Sum_probs=61.8
Q ss_pred HHHHHHHHHcCCChhHHHHHhhhcCC---CChhhHHHHHHHHHhcCChHHHHHHhhcCCC---CCceeHHHHHHHHHHCC
Q 007519 45 YNAMLSGFLQNGRLSEARRLFEEMPE---RNVVSWTAMICGLADAGRVCEARKLFEEMPE---RNVVSWNSMVVGLIRNG 118 (600)
Q Consensus 45 ~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~ 118 (600)
|..++..| ..+.+...+++.+.+++ .+..+....+-.+...|+-++|.+......+ .+.++|+.+.-.+....
T Consensus 11 F~~~lk~y-E~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK 89 (700)
T KOG1156|consen 11 FRRALKCY-ETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDK 89 (700)
T ss_pred HHHHHHHH-HHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhh
Confidence 33334433 34444444444444443 1223333333334444555555555554443 23344555555555555
Q ss_pred ChhHHHHHhhcCCC---CCcccHHHHHHHHHhcCCHhHHHHHHHhccc---CCchhHHHHHHHHHhcCChhHHHHHHcc
Q 007519 119 ELNEARKVFNSMPI---KNVISWNAMIAGYVECCMMGEAIVLFEEMEE---RNVVTWTSMISGYCRAGEVEEGYCLFRR 191 (600)
Q Consensus 119 ~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 191 (600)
++++|++.|..... .|...+.-+.-.-++.|+++.....-....+ .....|..++.++.-.|+...|..+++.
T Consensus 90 ~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~e 168 (700)
T KOG1156|consen 90 KYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEE 168 (700)
T ss_pred hHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555443 2223333333333344444443333333222 1122344444444444444444444433
No 79
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.18 E-value=5.7e-07 Score=90.92 Aligned_cols=464 Identities=13% Similarity=0.118 Sum_probs=280.1
Q ss_pred CCcchHHHHHHHHHcCCChhHHHHHhhhcCCCChhhHHHHHHHHHhcCChHHHHHHhhcCCC-------CC-ceeHHHHH
Q 007519 40 RNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPE-------RN-VVSWNSMV 111 (600)
Q Consensus 40 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~-~~~~~~l~ 111 (600)
.+..++++|...|..+++-.+ ..++.|+.--+..+.-||..+++--|.-.|++-.- -| ...|-.+.
T Consensus 870 ~d~a~hnAlaKIyIDSNNnPE------~fLkeN~yYDs~vVGkYCEKRDP~lA~vaYerGqcD~elI~vcNeNSlfK~~a 943 (1666)
T KOG0985|consen 870 QDPATHNALAKIYIDSNNNPE------RFLKENPYYDSKVVGKYCEKRDPHLACVAYERGQCDLELINVCNENSLFKSQA 943 (1666)
T ss_pred cchHHHhhhhheeecCCCChH------HhcccCCcchhhHHhhhhcccCCceEEEeecccCCcHHHHHhcCchhHHHHHH
Confidence 345555555555554433221 11122333333444445555555444444443321 01 11344555
Q ss_pred HHHHHCCChhHHHHHhhcCCC-----------------CCcccHHHHHHHHHhcCCHhHHHHHHHhcc-cCCch-----h
Q 007519 112 VGLIRNGELNEARKVFNSMPI-----------------KNVISWNAMIAGYVECCMMGEAIVLFEEME-ERNVV-----T 168 (600)
Q Consensus 112 ~~~~~~~~~~~a~~~~~~~~~-----------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~~~-----~ 168 (600)
+.+.+..|.+--.+++.+-.. .|+.......+++...+-+.+-+++++++. +++++ .
T Consensus 944 RYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nL 1023 (1666)
T KOG0985|consen 944 RYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNL 1023 (1666)
T ss_pred HHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhh
Confidence 666666666655555533211 466666777788888888888888888766 44332 2
Q ss_pred HHHHHHHHHhcCChhHHHHHHccCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHhc
Q 007519 169 WTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRF 248 (600)
Q Consensus 169 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 248 (600)
-+.|+-...+ -+..+..++.+++..-|.. .+...+...+-+++|..+|+... .+....+.|+. .-
T Consensus 1024 QnLLiLtAik-ad~trVm~YI~rLdnyDa~---~ia~iai~~~LyEEAF~ifkkf~--------~n~~A~~VLie---~i 1088 (1666)
T KOG0985|consen 1024 QNLLILTAIK-ADRTRVMEYINRLDNYDAP---DIAEIAIENQLYEEAFAIFKKFD--------MNVSAIQVLIE---NI 1088 (1666)
T ss_pred hhhHHHHHhh-cChHHHHHHHHHhccCCch---hHHHHHhhhhHHHHHHHHHHHhc--------ccHHHHHHHHH---Hh
Confidence 3333333333 3445566666666543221 23455666777788888887653 34444444443 34
Q ss_pred CChhhHHHHhcccCCCCchhHHHHHHHHHhcCChHHHHHHHhhCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCC
Q 007519 249 GRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGV 328 (600)
Q Consensus 249 ~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 328 (600)
+.++.|.++-++.. .+.+|+.+..+-.+.|.+.+|++-|-+. .|+..|..++....+.|.|++-.+.+...++..-
T Consensus 1089 ~~ldRA~efAe~~n--~p~vWsqlakAQL~~~~v~dAieSyika--dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~ 1164 (1666)
T KOG0985|consen 1089 GSLDRAYEFAERCN--EPAVWSQLAKAQLQGGLVKDAIESYIKA--DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVR 1164 (1666)
T ss_pred hhHHHHHHHHHhhC--ChHHHHHHHHHHHhcCchHHHHHHHHhc--CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhc
Confidence 66777777766654 4557888888888888888888877654 4556788888888888888888888877777655
Q ss_pred CCChhHHHHHHHHHhcccchhhhHHHHHHHhhhcCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHH
Q 007519 329 PPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGF 408 (600)
Q Consensus 329 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~ 408 (600)
.|... +.|+-+|++.+++.+...++ .-|+......+.+-+...|.++.|.-+|. ++..|..+...+
T Consensus 1165 E~~id--~eLi~AyAkt~rl~elE~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~-----~vSN~a~La~TL 1230 (1666)
T KOG0985|consen 1165 EPYID--SELIFAYAKTNRLTELEEFI-------AGPNVANIQQVGDRCFEEKMYEAAKLLYS-----NVSNFAKLASTL 1230 (1666)
T ss_pred Cccch--HHHHHHHHHhchHHHHHHHh-------cCCCchhHHHHhHHHhhhhhhHHHHHHHH-----HhhhHHHHHHHH
Confidence 55443 45777888888777665554 34565556667777777888888877775 445688888888
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCCCcchHHHHHHHHhhcCChHHH
Q 007519 409 SHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEA 488 (600)
Q Consensus 409 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 488 (600)
...|+++.|...-++. .+..||..+-.+|...+.+.-| .+... .+.....-..-|+..|-..|.+++-
T Consensus 1231 V~LgeyQ~AVD~aRKA------ns~ktWK~VcfaCvd~~EFrlA-----QiCGL-~iivhadeLeeli~~Yq~rGyFeEl 1298 (1666)
T KOG0985|consen 1231 VYLGEYQGAVDAARKA------NSTKTWKEVCFACVDKEEFRLA-----QICGL-NIIVHADELEELIEYYQDRGYFEEL 1298 (1666)
T ss_pred HHHHHHHHHHHHhhhc------cchhHHHHHHHHHhchhhhhHH-----HhcCc-eEEEehHhHHHHHHHHHhcCcHHHH
Confidence 9999999888766553 3567888888888887776654 23321 2233566677899999999999999
Q ss_pred HHHHHhCC-C-CCCHHHHHHHHHHHhhhhCCHHHHHHHHHHHHh-hC-C------CCCCcHHHHhHHHHhhCCcHHHH
Q 007519 489 EEFVLRLP-F-EPDHRIWGALLGACGFCEGNAEIAEHAAKRLLE-LD-P------LNAPAHVVLCNIYAASGRHVEEH 556 (600)
Q Consensus 489 ~~~~~~~~-~-~p~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~-~~-p------~~~~~~~~l~~~~~~~g~~~~A~ 556 (600)
..+++... + +..-..|..+.-.|. .=..++..++++-.+. ++ | +....|.-|...|.+-..||.|.
T Consensus 1299 Isl~Ea~LGLERAHMgmfTELaiLYs--kykp~km~EHl~LFwsRvNipKviRA~eqahlW~ElvfLY~~y~eyDNAa 1374 (1666)
T KOG0985|consen 1299 ISLLEAGLGLERAHMGMFTELAILYS--KYKPEKMMEHLKLFWSRVNIPKVIRAAEQAHLWSELVFLYDKYEEYDNAA 1374 (1666)
T ss_pred HHHHHhhhchhHHHHHHHHHHHHHHH--hcCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH
Confidence 99988753 2 233334444444443 3344555555544433 11 2 12334445555555555555443
No 80
>PF13041 PPR_2: PPR repeat family
Probab=99.17 E-value=9.2e-11 Score=76.26 Aligned_cols=50 Identities=28% Similarity=0.585 Sum_probs=46.9
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcc
Q 007519 396 RDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSH 445 (600)
Q Consensus 396 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 445 (600)
||+.+||+++.+|++.|++++|.++|++|.+.|++||..||+.++.+|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78899999999999999999999999999999999999999999998874
No 81
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.15 E-value=1.1e-08 Score=93.13 Aligned_cols=197 Identities=16% Similarity=0.192 Sum_probs=117.8
Q ss_pred hhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhcccchhhhHHHHHHHhhhcCCCchhHHHHHHHH
Q 007519 297 AVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISM 376 (600)
Q Consensus 297 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 376 (600)
...+..+...+...|++++|...+++..+.. +.+...+ ..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~-----------------------------------~~la~~ 74 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAY-----------------------------------LALALY 74 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHH-----------------------------------HHHHHH
Confidence 3456667777777777777777777776542 1222333 334444
Q ss_pred HHhcCChHHHHHHHhcCC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-ChhHHHHHHHHhcccCchHHH
Q 007519 377 YAKCGVIDNAYNIFSNMV---SRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHP-NSVTFLGILSACSHAGLVSRG 452 (600)
Q Consensus 377 ~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a 452 (600)
+...|++++|...+++.. +.+...+..+...+...|++++|.+.+++.......| ....+..+..++...|++++|
T Consensus 75 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 154 (234)
T TIGR02521 75 YQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKA 154 (234)
T ss_pred HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHH
Confidence 455555555555554443 2334455556666666677777777777766532222 223455556666777777777
Q ss_pred HHHHHHHHhhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHhCC-C-CCCHHHHHHHHHHHhhhhCCHHHHHHHHHHHH
Q 007519 453 WELFNAMFDVYKIQP-GPEHYVSMINLLGRAGKIKEAEEFVLRLP-F-EPDHRIWGALLGACGFCEGNAEIAEHAAKRLL 529 (600)
Q Consensus 453 ~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~p~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~ 529 (600)
...+++.... .| +...+..++..+...|++++|.+.+++.. . +++...+......+. ..|+.+.|....+.+.
T Consensus 155 ~~~~~~~~~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 155 EKYLTRALQI---DPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIAR-ALGDVAAAQRYGAQLQ 230 (234)
T ss_pred HHHHHHHHHh---CcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HHhhHHHHHHHHHHHH
Confidence 7777777653 33 35566677777777777777777776653 2 223444444445555 6777777777777665
Q ss_pred hhCC
Q 007519 530 ELDP 533 (600)
Q Consensus 530 ~~~p 533 (600)
...|
T Consensus 231 ~~~~ 234 (234)
T TIGR02521 231 KLFP 234 (234)
T ss_pred hhCc
Confidence 5433
No 82
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.15 E-value=8.6e-07 Score=85.75 Aligned_cols=248 Identities=13% Similarity=0.082 Sum_probs=154.0
Q ss_pred hHHHHHHHHHhcCChHHHHHHhhcCCCC---CceeHHHHHHHHHHCCChhHHHHHhhcCCC---CCcccHHHHHHHHHhc
Q 007519 75 SWTAMICGLADAGRVCEARKLFEEMPER---NVVSWNSMVVGLIRNGELNEARKVFNSMPI---KNVISWNAMIAGYVEC 148 (600)
Q Consensus 75 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~ 148 (600)
.+...+..| ..+++.+.+++.+.+++. ...+.....-.+...|+-++|.+....... .+...|..+.-.+...
T Consensus 10 lF~~~lk~y-E~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~d 88 (700)
T KOG1156|consen 10 LFRRALKCY-ETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSD 88 (700)
T ss_pred HHHHHHHHH-HHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhh
Confidence 344455554 667777777777766652 223344444445667888899888887766 4556677777777778
Q ss_pred CCHhHHHHHHHhccc---CCchhHHHHHHHHHhcCChhHHHHHHccCCC---CCcchHHHHHHHHHhcCChhHHHHHHHH
Q 007519 149 CMMGEAIVLFEEMEE---RNVVTWTSMISGYCRAGEVEEGYCLFRRMPR---KNVVSWTAMIGGFAWNGFHKESLLLFIE 222 (600)
Q Consensus 149 ~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~ 222 (600)
.++++|++.|..+.. .|...+.-+.-.-++.|+++..........+ .....|..++.++.-.|+...|..++++
T Consensus 89 K~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~e 168 (700)
T KOG1156|consen 89 KKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEE 168 (700)
T ss_pred hhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999998773 4556666665556667777777666665554 2445788888888888999999999998
Q ss_pred HHhhhcCCCCCChhhHHHHHH------HHHhcCChhhHHHHhcccCCC---CchhHHHHHHHHHhcCChHHHHHHHhhCC
Q 007519 223 MKGICDNGNNCNVQSCNSMIN------GYIRFGRLEEAQNLFDTVPVR---DEISWTSMIDGYLSVGQVSNAYYLFHNMP 293 (600)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~l~~------~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 293 (600)
..+... -.|+...|..... ...+.|..+.|.+.+....+. ....--.-...+.+.++.++|..++..+.
T Consensus 169 f~~t~~--~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll 246 (700)
T KOG1156|consen 169 FEKTQN--TSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLL 246 (700)
T ss_pred HHHhhc--cCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHH
Confidence 887621 2455555543322 334567777777776655422 11122334556677778888887777776
Q ss_pred C--CChhhHHH-HHHHHHhCCChhHHH-HHHHHHHH
Q 007519 294 D--RDAVAWTA-MISGLVQNELFVEAT-YLFMEMRA 325 (600)
Q Consensus 294 ~--~~~~~~~~-li~~~~~~g~~~~a~-~~~~~m~~ 325 (600)
. ||...|.. +..++.+-.+--+++ .+|...-+
T Consensus 247 ~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~ 282 (700)
T KOG1156|consen 247 ERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSE 282 (700)
T ss_pred hhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhh
Confidence 5 44444433 333443222222333 44444433
No 83
>PRK12370 invasion protein regulator; Provisional
Probab=99.14 E-value=4.4e-09 Score=107.71 Aligned_cols=210 Identities=10% Similarity=-0.005 Sum_probs=157.8
Q ss_pred cchhhhHHHHHHHhhhcCCCchhHHHHHHHHHH---------hcCChHHHHHHHhcCC---CCChhhHHHHHHHHHhcCC
Q 007519 346 ANIDLGRQIHCVLMKTESESDLILENCLISMYA---------KCGVIDNAYNIFSNMV---SRDLVSWNSMVMGFSHHGL 413 (600)
Q Consensus 346 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---------~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~ 413 (600)
++.+.|...++.+.+.... +...+..+..++. ..+++++|...+++.. +.+...+..+...+...|+
T Consensus 275 ~~~~~A~~~~~~Al~ldP~-~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 275 YSLQQALKLLTQCVNMSPN-SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC
Confidence 3567888888888776543 3445555555443 2345789999998876 4577788888889999999
Q ss_pred hHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCCC-cchHHHHHHHHhhcCChHHHHHHH
Q 007519 414 ANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPG-PEHYVSMINLLGRAGKIKEAEEFV 492 (600)
Q Consensus 414 ~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~ 492 (600)
+++|+..|++..+.+ +.+...+..+..++...|++++|...++++.+. .|+ ...+..++..+...|++++|...+
T Consensus 354 ~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l---~P~~~~~~~~~~~~~~~~g~~eeA~~~~ 429 (553)
T PRK12370 354 YIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKL---DPTRAAAGITKLWITYYHTGIDDAIRLG 429 (553)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCChhhHHHHHHHHHhccCHHHHHHHH
Confidence 999999999999853 334566777788899999999999999999864 664 334444555677789999999999
Q ss_pred HhCC--CCCCHH-HHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCCCcHHHHhHHHHhhCCcHHHHHHHHHHh
Q 007519 493 LRLP--FEPDHR-IWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMG 563 (600)
Q Consensus 493 ~~~~--~~p~~~-~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 563 (600)
++.. ..|+.. .+..+..++. ..|+.++|...++++....|.+......++..|...|+ +|...++.+.
T Consensus 430 ~~~l~~~~p~~~~~~~~la~~l~-~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~a~~~l~~ll 500 (553)
T PRK12370 430 DELRSQHLQDNPILLSMQVMFLS-LKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNSE--RALPTIREFL 500 (553)
T ss_pred HHHHHhccccCHHHHHHHHHHHH-hCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccHH--HHHHHHHHHH
Confidence 8864 245544 4555556666 89999999999999988888777777888888888884 7777444444
No 84
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.09 E-value=2.5e-05 Score=79.62 Aligned_cols=485 Identities=12% Similarity=0.097 Sum_probs=271.1
Q ss_pred HHHHHHHHHcCCChhHHHHHhhhcCC-CChhhHHHHH-----HHHHhcCChHHHHHHhhcCCC----CCceeHHHHHHHH
Q 007519 45 YNAMLSGFLQNGRLSEARRLFEEMPE-RNVVSWTAMI-----CGLADAGRVCEARKLFEEMPE----RNVVSWNSMVVGL 114 (600)
Q Consensus 45 ~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~l~-----~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~l~~~~ 114 (600)
+-.+...|.+.|-...|++.|..... ....+...++ -.|...-.++.+.+.++.|.. .|..+...+..-|
T Consensus 609 ra~IAqLCEKAGL~qraLehytDl~DIKR~vVhth~L~pEwLv~yFg~lsve~s~eclkaml~~NirqNlQi~VQvatky 688 (1666)
T KOG0985|consen 609 RAEIAQLCEKAGLLQRALEHYTDLYDIKRVVVHTHLLNPEWLVNYFGSLSVEDSLECLKAMLSANIRQNLQIVVQVATKY 688 (1666)
T ss_pred HHHHHHHHHhcchHHHHHHhcccHHHHHHHHHHhccCCHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 56677788888888888888877754 1111222211 234445567778888887765 3444445555555
Q ss_pred HHCCChhHHHHHhhcCCC---------------CCcccHHHHHHHHHhcCCHhHHHHHHHhcc---------------c-
Q 007519 115 IRNGELNEARKVFNSMPI---------------KNVISWNAMIAGYVECCMMGEAIVLFEEME---------------E- 163 (600)
Q Consensus 115 ~~~~~~~~a~~~~~~~~~---------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---------------~- 163 (600)
...=..+..+++|+..+. .|+......|.+.++.|.+.+.+++.++-- -
T Consensus 689 ~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicresn~YdpErvKNfLkeAkL~ 768 (1666)
T KOG0985|consen 689 HEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLT 768 (1666)
T ss_pred HHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhccccCCHHHHHHHHHhcccc
Confidence 555556666677766654 577777788888889998888887765432 0
Q ss_pred ---C-----CchhHHHHHHHHHhcCChhHHHHHHccCCCC----------------------------CcchHHHHHHHH
Q 007519 164 ---R-----NVVTWTSMISGYCRAGEVEEGYCLFRRMPRK----------------------------NVVSWTAMIGGF 207 (600)
Q Consensus 164 ---~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----------------------------~~~~~~~li~~~ 207 (600)
| |..-+-.=+..|.-.++..+-+++|-+-..| ....-..|..-.
T Consensus 769 DqlPLiiVCDRf~fVhdlvlYLyrnn~~kyIE~yVQkvNps~~p~VvG~LLD~dC~E~~ik~Li~~v~gq~~~deLv~Ev 848 (1666)
T KOG0985|consen 769 DQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRTPQVVGALLDVDCSEDFIKNLILSVRGQFPVDELVEEV 848 (1666)
T ss_pred ccCceEEEecccccHHHHHHHHHHhhHHHHHHHHHhhcCCcccchhhhhhhcCCCcHHHHHHHHHHHhccCChHHHHHHH
Confidence 1 1111111112222233333333333222111 112233344445
Q ss_pred HhcCChhHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHhcCChhh-HHH---HhcccC------CCCc-----------
Q 007519 208 AWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEE-AQN---LFDTVP------VRDE----------- 266 (600)
Q Consensus 208 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~---~~~~~~------~~~~----------- 266 (600)
-+.++..--+..++...+. | ..|..++++|.+.|...++-.+ -++ .|+... ++|+
T Consensus 849 EkRNRLklLlp~LE~~i~e---G-~~d~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCEKRDP~lA~vaYerGq 924 (1666)
T KOG0985|consen 849 EKRNRLKLLLPWLESLIQE---G-SQDPATHNALAKIYIDSNNNPERFLKENPYYDSKVVGKYCEKRDPHLACVAYERGQ 924 (1666)
T ss_pred HhhhhHHHHHHHHHHHHhc---c-CcchHHHhhhhheeecCCCChHHhcccCCcchhhHHhhhhcccCCceEEEeecccC
Confidence 5566666666666666654 4 3477889999888876554322 111 111110 1111
Q ss_pred ------------hhHHHHHHHHHhcCChHHHHHHHhhCC----------------C-CChhhHHHHHHHHHhCCChhHHH
Q 007519 267 ------------ISWTSMIDGYLSVGQVSNAYYLFHNMP----------------D-RDAVAWTAMISGLVQNELFVEAT 317 (600)
Q Consensus 267 ------------~~~~~l~~~~~~~~~~~~A~~~~~~~~----------------~-~~~~~~~~li~~~~~~g~~~~a~ 317 (600)
..+.....-+.+..+.+--.+++.+-. + .|+..-...+.++...+-+.+-+
T Consensus 925 cD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLI 1004 (1666)
T KOG0985|consen 925 CDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELI 1004 (1666)
T ss_pred CcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHH
Confidence 122333333444444444334432211 0 35566677788888888888999
Q ss_pred HHHHHHHHCCCCCC-hhHHHHHHHHHhcccchhhhHHHHHHHhhhcCC------CchhHHHHHHHHHH------------
Q 007519 318 YLFMEMRAHGVPPL-NATFSVLFGAAGATANIDLGRQIHCVLMKTESE------SDLILENCLISMYA------------ 378 (600)
Q Consensus 318 ~~~~~m~~~g~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~------~~~~~~~~l~~~~~------------ 378 (600)
+++++..-.....+ ..-+..|+-.-+-..+...+.++.+++-..+.+ .+...|......|-
T Consensus 1005 ELLEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyDa~~ia~iai~~~LyEEAF~ifkkf~~n~~A~~VL 1084 (1666)
T KOG0985|consen 1005 ELLEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIAEIAIENQLYEEAFAIFKKFDMNVSAIQVL 1084 (1666)
T ss_pred HHHHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCCchhHHHHHhhhhHHHHHHHHHHHhcccHHHHHHH
Confidence 99988764321111 111212221111122333333333333222110 00111111111111
Q ss_pred --hcCChHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccCchHHHHHHH
Q 007519 379 --KCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELF 456 (600)
Q Consensus 379 --~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 456 (600)
..+.++.|.++-++.. .+..|+.+..+..+.|...+|++-|-+. .|+..|..+++.+.+.|.+++-.+++
T Consensus 1085 ie~i~~ldRA~efAe~~n--~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL 1156 (1666)
T KOG0985|consen 1085 IENIGSLDRAYEFAERCN--EPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYL 1156 (1666)
T ss_pred HHHhhhHHHHHHHHHhhC--ChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHH
Confidence 1233344444333332 4467999999999999999999877543 35567889999999999999999999
Q ss_pred HHHHhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCC
Q 007519 457 NAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNA 536 (600)
Q Consensus 457 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 536 (600)
..+.++ .-.|. +-..|+.+|++.++..+-++++ ..|+.........-|. ..|.++.|.-+|. +.
T Consensus 1157 ~MaRkk-~~E~~--id~eLi~AyAkt~rl~elE~fi----~gpN~A~i~~vGdrcf-~~~~y~aAkl~y~--------~v 1220 (1666)
T KOG0985|consen 1157 LMARKK-VREPY--IDSELIFAYAKTNRLTELEEFI----AGPNVANIQQVGDRCF-EEKMYEAAKLLYS--------NV 1220 (1666)
T ss_pred HHHHHh-hcCcc--chHHHHHHHHHhchHHHHHHHh----cCCCchhHHHHhHHHh-hhhhhHHHHHHHH--------Hh
Confidence 877765 44444 4567899999999988877776 3466666677777777 7777776666553 23
Q ss_pred CcHHHHhHHHHhhCCcHHHHH
Q 007519 537 PAHVVLCNIYAASGRHVEEHK 557 (600)
Q Consensus 537 ~~~~~l~~~~~~~g~~~~A~~ 557 (600)
..|..|+..+...|.+..|..
T Consensus 1221 SN~a~La~TLV~LgeyQ~AVD 1241 (1666)
T KOG0985|consen 1221 SNFAKLASTLVYLGEYQGAVD 1241 (1666)
T ss_pred hhHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666655554
No 85
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.07 E-value=1.4e-08 Score=95.02 Aligned_cols=217 Identities=12% Similarity=-0.026 Sum_probs=138.6
Q ss_pred HhCCChhHHHHHHHHHHHCC-CCCC--hhHHHHHHHHHhcccchhhhHHHHHHHhhhcCCCchhHHHHHHHHHHhcCChH
Q 007519 308 VQNELFVEATYLFMEMRAHG-VPPL--NATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVID 384 (600)
Q Consensus 308 ~~~g~~~~a~~~~~~m~~~g-~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 384 (600)
...+..+.++.-+.++.... ..|+ ...+..+...+...|+.+.|...+....+.... +...|+.+...+...|+++
T Consensus 37 ~~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~~~~~g~~~ 115 (296)
T PRK11189 37 QPTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPD-MADAYNYLGIYLTQAGNFD 115 (296)
T ss_pred CCchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCCHH
Confidence 34466677888888877542 2222 234555666777888888888888877776543 5677788888888888888
Q ss_pred HHHHHHhcCC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccCchHHHHHHHHHHHh
Q 007519 385 NAYNIFSNMV---SRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFD 461 (600)
Q Consensus 385 ~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 461 (600)
+|...|++.. +.+..+|..+..++...|++++|++.|++..+. .|+..........+...++.++|.+.+++...
T Consensus 116 ~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~ 193 (296)
T PRK11189 116 AAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYE 193 (296)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 8888888775 335567777778888888888888888888764 45443222222233456778888888866553
Q ss_pred hcCCCCCcchHHHHHHHHhhcCChHH--HHHHHHh-CC----CCC-CHHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCC
Q 007519 462 VYKIQPGPEHYVSMINLLGRAGKIKE--AEEFVLR-LP----FEP-DHRIWGALLGACGFCEGNAEIAEHAAKRLLELDP 533 (600)
Q Consensus 462 ~~~~~p~~~~~~~l~~~~~~~g~~~~--A~~~~~~-~~----~~p-~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p 533 (600)
...|+...+ .+. ....|+..+ +.+.+.+ .. ..| ....|..+...+. ..|++++|+..|+++++.+|
T Consensus 194 --~~~~~~~~~-~~~--~~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~-~~g~~~~A~~~~~~Al~~~~ 267 (296)
T PRK11189 194 --KLDKEQWGW-NIV--EFYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYL-SLGDLDEAAALFKLALANNV 267 (296)
T ss_pred --hCCccccHH-HHH--HHHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCC
Confidence 223332221 222 233444433 3322222 11 112 2345677777777 88888888888888888886
No 86
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.07 E-value=3.5e-06 Score=77.10 Aligned_cols=261 Identities=11% Similarity=0.027 Sum_probs=188.3
Q ss_pred CChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHH-HHHHhcccchhhhHHHHHHHhhhcCCCchhHHHHH
Q 007519 295 RDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVL-FGAAGATANIDLGRQIHCVLMKTESESDLILENCL 373 (600)
Q Consensus 295 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 373 (600)
.|+.....+.+.+...|+.++|+..|++.+.. .|+..+---+ .-.+...|+.+....+...+.... +.....|-.-
T Consensus 230 ~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~ 306 (564)
T KOG1174|consen 230 CNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVH 306 (564)
T ss_pred ccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhh
Confidence 47778889999999999999999999988764 4544321111 112345666666666555443322 1122222233
Q ss_pred HHHHHhcCChHHHHHHHhcCCCC---ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccCchH
Q 007519 374 ISMYAKCGVIDNAYNIFSNMVSR---DLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVS 450 (600)
Q Consensus 374 ~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~ 450 (600)
.......+++..|+.+-++.+.. ++..+-.-...+...|++++|.-.|+...... +-+..+|..++.+|...|.+.
T Consensus 307 ~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~k 385 (564)
T KOG1174|consen 307 AQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFK 385 (564)
T ss_pred hhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHH
Confidence 34455678899999999888744 44444444567889999999999999988641 345689999999999999999
Q ss_pred HHHHHHHHHHhhcCCCCCcchHHHHH-HHH-hhcCChHHHHHHHHhC-CCCCCHH-HHHHHHHHHhhhhCCHHHHHHHHH
Q 007519 451 RGWELFNAMFDVYKIQPGPEHYVSMI-NLL-GRAGKIKEAEEFVLRL-PFEPDHR-IWGALLGACGFCEGNAEIAEHAAK 526 (600)
Q Consensus 451 ~a~~~~~~~~~~~~~~p~~~~~~~l~-~~~-~~~g~~~~A~~~~~~~-~~~p~~~-~~~~l~~~~~~~~g~~~~a~~~~~ 526 (600)
+|.-.-+...+. +..+..+...++ ..+ ....--++|.+++++. ...|+.. ..+.+...|. ..|..+.++.+++
T Consensus 386 EA~~~An~~~~~--~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~-~Eg~~~D~i~LLe 462 (564)
T KOG1174|consen 386 EANALANWTIRL--FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQ-VEGPTKDIIKLLE 462 (564)
T ss_pred HHHHHHHHHHHH--hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHH-hhCccchHHHHHH
Confidence 998888777753 333555655553 222 2333458899999885 4788754 5566666777 9999999999999
Q ss_pred HHHhhCCCCCCcHHHHhHHHHhhCCcHHHHHHHHHHh
Q 007519 527 RLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMG 563 (600)
Q Consensus 527 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 563 (600)
+.+...| |...+..|++.+...+.+.+|...+....
T Consensus 463 ~~L~~~~-D~~LH~~Lgd~~~A~Ne~Q~am~~y~~AL 498 (564)
T KOG1174|consen 463 KHLIIFP-DVNLHNHLGDIMRAQNEPQKAMEYYYKAL 498 (564)
T ss_pred HHHhhcc-ccHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 9999999 89999999999999999999999554443
No 87
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.06 E-value=3.5e-07 Score=92.52 Aligned_cols=150 Identities=13% Similarity=0.102 Sum_probs=105.7
Q ss_pred chhHHHHHHHhcCChhhHHHHhccCCC---CCcchHHHHHHHHHcCCChhHHHHHhhhcCCCCh-----hhHHHHHHHHH
Q 007519 13 HLTSSITKYSKRGFIDEAKALFQLMPQ---RNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNV-----VSWTAMICGLA 84 (600)
Q Consensus 13 ~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-----~~~~~l~~~~~ 84 (600)
.|..+..-|..-.+...|.+.|+...+ .+..+...+.+.|++..+++.|..+.-...+.+. ..|-.+.-.|.
T Consensus 494 af~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyL 573 (1238)
T KOG1127|consen 494 AFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYL 573 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhcccccc
Confidence 456666667666677778888887765 4566788888888888888888887444433221 22333555677
Q ss_pred hcCChHHHHHHhhcCCC---CCceeHHHHHHHHHHCCChhHHHHHhhcCCCCCcc-cHHHHH--HHHHhcCCHhHHHHHH
Q 007519 85 DAGRVCEARKLFEEMPE---RNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVI-SWNAMI--AGYVECCMMGEAIVLF 158 (600)
Q Consensus 85 ~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~l~--~~~~~~~~~~~A~~~~ 158 (600)
+.+++.+|+.-|+...+ .|...|..++.+|.+.|.+..|+++|.+....++. .|...- -..+..|.+.+|...+
T Consensus 574 ea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald~l 653 (1238)
T KOG1127|consen 574 EAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALDAL 653 (1238)
T ss_pred CccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 78888888888887776 46677888999999999999999999888764433 232222 2245668888888877
Q ss_pred Hhcc
Q 007519 159 EEME 162 (600)
Q Consensus 159 ~~~~ 162 (600)
....
T Consensus 654 ~~ii 657 (1238)
T KOG1127|consen 654 GLII 657 (1238)
T ss_pred HHHH
Confidence 7665
No 88
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.05 E-value=1.7e-07 Score=92.70 Aligned_cols=283 Identities=16% Similarity=0.107 Sum_probs=151.7
Q ss_pred HHHhcCChHHHHHHHhhCCC--CCh-hhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHh------cc
Q 007519 275 GYLSVGQVSNAYYLFHNMPD--RDA-VAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAG------AT 345 (600)
Q Consensus 275 ~~~~~~~~~~A~~~~~~~~~--~~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~------~~ 345 (600)
.+...|++++|++.++.-.. .|. .........+.+.|+.++|..+|..+++. .|+...|...+..+. ..
T Consensus 13 il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~r--NPdn~~Yy~~L~~~~g~~~~~~~ 90 (517)
T PF12569_consen 13 ILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDR--NPDNYDYYRGLEEALGLQLQLSD 90 (517)
T ss_pred HHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHhhhccccc
Confidence 34455555566555554333 222 23444455566666666666666666665 345444444333332 11
Q ss_pred cchhhhHHHHHHHhhhcCCCchhHHHHHHHHHHhcCChH-HHHHHHhcCCCCCh-hhHHHHHHHHHhcCChHHHHHHHHH
Q 007519 346 ANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVID-NAYNIFSNMVSRDL-VSWNSMVMGFSHHGLANETLKVFES 423 (600)
Q Consensus 346 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~A~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~ 423 (600)
.+.+....+++.+...-...+.. ..+.-.+.....+. .+..++..+....+ .+|+.+-..|.......-..+++..
T Consensus 91 ~~~~~~~~~y~~l~~~yp~s~~~--~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~ 168 (517)
T PF12569_consen 91 EDVEKLLELYDELAEKYPRSDAP--RRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVEE 168 (517)
T ss_pred ccHHHHHHHHHHHHHhCccccch--hHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHHH
Confidence 13444455555444332221111 11111111111121 22222223332222 3344444444433333334444444
Q ss_pred HHHc----C----------CCCChh--HHHHHHHHhcccCchHHHHHHHHHHHhhcCCCCC-cchHHHHHHHHhhcCChH
Q 007519 424 MLES----G----------THPNSV--TFLGILSACSHAGLVSRGWELFNAMFDVYKIQPG-PEHYVSMINLLGRAGKIK 486 (600)
Q Consensus 424 m~~~----~----------~~p~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~ 486 (600)
.... + -+|+.. ++..+...|...|++++|.++++++++. .|+ +..|..-++.|-+.|+++
T Consensus 169 ~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h---tPt~~ely~~KarilKh~G~~~ 245 (517)
T PF12569_consen 169 YVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH---TPTLVELYMTKARILKHAGDLK 245 (517)
T ss_pred HHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc---CCCcHHHHHHHHHHHHHCCCHH
Confidence 3321 1 123332 3344556777888888998888888854 675 778888888888899999
Q ss_pred HHHHHHHhCC-CCCCHHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhC--CCC-------CCcHHHHhHHHHhhCCcHHHH
Q 007519 487 EAEEFVLRLP-FEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELD--PLN-------APAHVVLCNIYAASGRHVEEH 556 (600)
Q Consensus 487 ~A~~~~~~~~-~~p~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~--p~~-------~~~~~~l~~~~~~~g~~~~A~ 556 (600)
+|.+.++... ..+...-.|+-..-+..+.|++++|...+......+ |.. .......+.+|.+.|++..|.
T Consensus 246 ~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~AL 325 (517)
T PF12569_consen 246 EAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLAL 325 (517)
T ss_pred HHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 9888888876 555555555555444448888888888887766544 211 122235578888999999988
Q ss_pred HHHHHHhh
Q 007519 557 KLRMDMGL 564 (600)
Q Consensus 557 ~~~~~~~~ 564 (600)
+-+..+.+
T Consensus 326 k~~~~v~k 333 (517)
T PF12569_consen 326 KRFHAVLK 333 (517)
T ss_pred HHHHHHHH
Confidence 85555543
No 89
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.03 E-value=1.2e-06 Score=86.95 Aligned_cols=424 Identities=14% Similarity=0.087 Sum_probs=207.2
Q ss_pred HHHHHHCCChhHHHHHhhcCCC--CC-cccHHHHHHHHHhcCCHhHHHHHHHhccc--CCchhHH-HHHHHHHhc-----
Q 007519 111 VVGLIRNGELNEARKVFNSMPI--KN-VISWNAMIAGYVECCMMGEAIVLFEEMEE--RNVVTWT-SMISGYCRA----- 179 (600)
Q Consensus 111 ~~~~~~~~~~~~a~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~-~l~~~~~~~----- 179 (600)
...+...|++++|++.++.-.. .| ..........+.+.|+.++|..++..+.+ |+...|. .+..+..-.
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~ 90 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLSD 90 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhccccc
Confidence 4556677888888887776554 33 34455566777777888888888777774 4444433 333333221
Q ss_pred CChhHHHHHHccCCC--CCcchHHHHHHHHHhcCChh-HHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHhcCChhhHHH
Q 007519 180 GEVEEGYCLFRRMPR--KNVVSWTAMIGGFAWNGFHK-ESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQN 256 (600)
Q Consensus 180 g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 256 (600)
.+.+...++++.+.. |...+...+.-.+..-..+. .+...+..+... |+++ +++.|-..|......+-...
T Consensus 91 ~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~K---gvPs---lF~~lk~Ly~d~~K~~~i~~ 164 (517)
T PF12569_consen 91 EDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRK---GVPS---LFSNLKPLYKDPEKAAIIES 164 (517)
T ss_pred ccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhc---CCch---HHHHHHHHHcChhHHHHHHH
Confidence 234555555555543 22222222222222211222 223333333332 4332 33444334433222222222
Q ss_pred HhcccCCCCchhHHHHHHHHHhcCChHHHHHHHhhCCCCChh--hHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC-hh
Q 007519 257 LFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAV--AWTAMISGLVQNELFVEATYLFMEMRAHGVPPL-NA 333 (600)
Q Consensus 257 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~ 333 (600)
++.... ......+.+.... =..-..|... ++.-+...|-..|++++|++..++.+++ .|+ ..
T Consensus 165 l~~~~~-----------~~l~~~~~~~~~~--~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~e 229 (517)
T PF12569_consen 165 LVEEYV-----------NSLESNGSFSNGD--DEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVE 229 (517)
T ss_pred HHHHHH-----------HhhcccCCCCCcc--ccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHH
Confidence 222111 0000000000000 0000112332 3344566667777777777777777765 454 33
Q ss_pred HHHHHHHHHhcccchhhhHHHHHHHhhhcCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCCh----------hhH--
Q 007519 334 TFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDL----------VSW-- 401 (600)
Q Consensus 334 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~----------~~~-- 401 (600)
.|..-.+.+-+.|++.+|...++.+.+.... |..+-+-.+..+.+.|++++|..++.....++. ..|
T Consensus 230 ly~~KarilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~ 308 (517)
T PF12569_consen 230 LYMTKARILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFE 308 (517)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHH
Confidence 4555556777777777777777776665543 566666677777778888888777776664431 122
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHc--CCC-------------CChhHHHHHHHHhcccC-------chHHHHHHHHHH
Q 007519 402 NSMVMGFSHHGLANETLKVFESMLES--GTH-------------PNSVTFLGILSACSHAG-------LVSRGWELFNAM 459 (600)
Q Consensus 402 ~~l~~~~~~~~~~~~a~~~~~~m~~~--~~~-------------p~~~~~~~l~~~~~~~g-------~~~~a~~~~~~~ 459 (600)
.....+|.+.|++..|++-|..+.+. .+. .+..+|..+++..-+.. -...|.+++-.+
T Consensus 309 ~e~a~a~~r~~~~~~ALk~~~~v~k~f~~~~~DQfDFH~Yc~RK~t~r~Y~~~L~~ed~l~~~~~y~raa~~ai~iYl~l 388 (517)
T PF12569_consen 309 TECAEAYLRQGDYGLALKRFHAVLKHFDDFEEDQFDFHSYCLRKMTLRAYVDMLRWEDKLRSHPFYRRAAKGAIRIYLEL 388 (517)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccHHHHHHhhccHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHH
Confidence 22456677778777777666555442 111 12223333332221111 123344444444
Q ss_pred HhhcCCCCCcch-----------HHHHHHHH---hhcCChHHHHHHHH-----------hC----CCCCCHHHHHHHHHH
Q 007519 460 FDVYKIQPGPEH-----------YVSMINLL---GRAGKIKEAEEFVL-----------RL----PFEPDHRIWGALLGA 510 (600)
Q Consensus 460 ~~~~~~~p~~~~-----------~~~l~~~~---~~~g~~~~A~~~~~-----------~~----~~~p~~~~~~~l~~~ 510 (600)
............ ...+..-. .+...-+++.+.-. +. +...|..... .-
T Consensus 389 ~d~~~~~~~~~~~~~~~~~~~~e~Kk~~kK~kK~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~Dp~G---ek 465 (517)
T PF12569_consen 389 HDKPEAKQGEEQEADNENMSAAERKKAKKKAKKAAKKAKKEEAEKAAKKEPKKQQNKSKKKEKVEPKKKDDDPLG---EK 465 (517)
T ss_pred hcCcccccccccccccccCChHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhhhccccccccccCCcCCCCccH---HH
Confidence 432111000000 00000000 11111111111110 00 1111111111 11
Q ss_pred HhhhhCCHHHHHHHHHHHHhhCCCCCCcHHHHhHHHHhhCCcHHHHHHH
Q 007519 511 CGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLR 559 (600)
Q Consensus 511 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 559 (600)
+.....=.++|.++++-+.+..|++..+|..-..+|.+.|.+--|.+-+
T Consensus 466 L~~t~dPLe~A~kfl~pL~~~a~~~~et~~laFeVy~Rk~K~LLaLqaL 514 (517)
T PF12569_consen 466 LLKTEDPLEEAMKFLKPLLELAPDNIETHLLAFEVYLRKGKYLLALQAL 514 (517)
T ss_pred HhcCCcHHHHHHHHHHHHHHhCccchhhHHHHhHHHHhcCcHHHHHHHH
Confidence 2203345688999999999999999999999999999999999888844
No 90
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.03 E-value=1.3e-07 Score=88.57 Aligned_cols=91 Identities=20% Similarity=0.206 Sum_probs=45.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhcCC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHhc
Q 007519 369 LENCLISMYAKCGVIDNAYNIFSNMV---SRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPN-SVTFLGILSACS 444 (600)
Q Consensus 369 ~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~ 444 (600)
.|..+...|...|+.++|...|++.. +.+...|+.+...+...|++++|...|++..+. .|+ ...+..+..++.
T Consensus 66 ~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~ 143 (296)
T PRK11189 66 LHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLEL--DPTYNYAYLNRGIALY 143 (296)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH
Confidence 34444445555555555555555443 334445555555555555555555555555542 332 234444444455
Q ss_pred ccCchHHHHHHHHHHHh
Q 007519 445 HAGLVSRGWELFNAMFD 461 (600)
Q Consensus 445 ~~g~~~~a~~~~~~~~~ 461 (600)
..|++++|.+.+++..+
T Consensus 144 ~~g~~~eA~~~~~~al~ 160 (296)
T PRK11189 144 YGGRYELAQDDLLAFYQ 160 (296)
T ss_pred HCCCHHHHHHHHHHHHH
Confidence 55555555555555543
No 91
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.02 E-value=4.2e-09 Score=102.59 Aligned_cols=230 Identities=16% Similarity=0.184 Sum_probs=124.1
Q ss_pred eHHHHHHHHHHCCChhHHHHHhhcCCC----------CCcc-cHHHHHHHHHhcCCHhHHHHHHHhccc-------CC--
Q 007519 106 SWNSMVVGLIRNGELNEARKVFNSMPI----------KNVI-SWNAMIAGYVECCMMGEAIVLFEEMEE-------RN-- 165 (600)
Q Consensus 106 ~~~~l~~~~~~~~~~~~a~~~~~~~~~----------~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~-------~~-- 165 (600)
+...|...|...|+++.|..++++..+ +... ..+.+...|...+++++|..+|+++.. ++
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~ 280 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHP 280 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 344477788888888888888877654 2222 222355667777777777777777652 11
Q ss_pred --chhHHHHHHHHHhcCChhHHHHHHccCCC----------CCc-chHHHHHHHHHhcCChhHHHHHHHHHHhhhcCCCC
Q 007519 166 --VVTWTSMISGYCRAGEVEEGYCLFRRMPR----------KNV-VSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNN 232 (600)
Q Consensus 166 --~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----------~~~-~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 232 (600)
..+++.|..+|.+.|++++|...+++..+ +.+ ..++.++..+...+++++|..+++...+.....+.
T Consensus 281 ~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g 360 (508)
T KOG1840|consen 281 AVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPG 360 (508)
T ss_pred HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhcc
Confidence 23455666677777777776666554331 111 12445555556666666666666555544221122
Q ss_pred CC----hhhHHHHHHHHHhcCChhhHHHHhcccCCCCchhHHHHHHHHHhcCChHHHHHHHhhCCCC----ChhhHHHHH
Q 007519 233 CN----VQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDR----DAVAWTAMI 304 (600)
Q Consensus 233 ~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~li 304 (600)
++ ..+++.+...|...|++++|.++++.+.. ..++.... ...+++.+.
T Consensus 361 ~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~------------------------~~~~~~~~~~~~~~~~l~~la 416 (508)
T KOG1840|consen 361 EDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQ------------------------ILRELLGKKDYGVGKPLNQLA 416 (508)
T ss_pred ccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHH------------------------HHHhcccCcChhhhHHHHHHH
Confidence 22 23455555555555555555555554430 00000000 112445555
Q ss_pred HHHHhCCChhHHHHHHHHHH----HCCC-CCC-hhHHHHHHHHHhcccchhhhHHHHHHHh
Q 007519 305 SGLVQNELFVEATYLFMEMR----AHGV-PPL-NATFSVLFGAAGATANIDLGRQIHCVLM 359 (600)
Q Consensus 305 ~~~~~~g~~~~a~~~~~~m~----~~g~-~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 359 (600)
..|.+.+.+.+|.++|.+.. ..|. .|+ ..+|..|...|...|+++.|.++...+.
T Consensus 417 ~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 417 EAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 55666666665555555432 2221 122 2456667777777777777777666444
No 92
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.01 E-value=1.3e-08 Score=96.70 Aligned_cols=191 Identities=17% Similarity=0.176 Sum_probs=136.2
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhcCC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHH---
Q 007519 367 LILENCLISMYAKCGVIDNAYNIFSNMV---SRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGIL--- 440 (600)
Q Consensus 367 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~--- 440 (600)
...|..|.......++-..|+..++++. +.|....-.|.-.|...|.-.+|+..|+.-.... |.. ..+.
T Consensus 319 aeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~--p~y---~~l~~a~ 393 (579)
T KOG1125|consen 319 AEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKMLDKWIRNK--PKY---VHLVSAG 393 (579)
T ss_pred HHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhC--ccc---hhccccC
Confidence 3344444444444555555555555444 3445555556666777777777777777765432 110 0000
Q ss_pred --------HHhcccCchHHHHHHHHHHHhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhCC-CCCC-HHHHHHHHHH
Q 007519 441 --------SACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLP-FEPD-HRIWGALLGA 510 (600)
Q Consensus 441 --------~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~ 510 (600)
........+....++|-.+....+..+|+.+...|+-.|.-.|++++|.+.|+.+. .+|+ ...||-+...
T Consensus 394 ~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAt 473 (579)
T KOG1125|consen 394 ENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGAT 473 (579)
T ss_pred ccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHH
Confidence 11222333455666777776665666788899999999999999999999999875 7775 5678888888
Q ss_pred HhhhhCCHHHHHHHHHHHHhhCCCCCCcHHHHhHHHHhhCCcHHHHH-HHHHHh
Q 007519 511 CGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHK-LRMDMG 563 (600)
Q Consensus 511 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~-~~~~~~ 563 (600)
+. ...+.++|+..|.+++++.|....+...|+-.|...|.+++|.+ +++.+.
T Consensus 474 LA-N~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 474 LA-NGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred hc-CCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 88 88899999999999999999999999999999999999999999 666654
No 93
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.96 E-value=1.5e-07 Score=79.29 Aligned_cols=187 Identities=13% Similarity=0.082 Sum_probs=89.6
Q ss_pred HHHHHHhcCChHHHHHHHhcCC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-ChhHHHHHHHHhcccCc
Q 007519 373 LISMYAKCGVIDNAYNIFSNMV---SRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHP-NSVTFLGILSACSHAGL 448 (600)
Q Consensus 373 l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~ 448 (600)
|.-.|...|+...|..-+++.. +.+..+|..+...|.+.|+.+.|.+.|++..+. .| +....|....-+|..|.
T Consensus 41 Lal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl--~p~~GdVLNNYG~FLC~qg~ 118 (250)
T COG3063 41 LALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSL--APNNGDVLNNYGAFLCAQGR 118 (250)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhc--CCCccchhhhhhHHHHhCCC
Confidence 3444555555555555555544 223344555555555555555555555555542 22 22344444444455555
Q ss_pred hHHHHHHHHHHHhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhCC-CCCC-HHHHHHHHHHHhhhhCCHHHHHHHHH
Q 007519 449 VSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLP-FEPD-HRIWGALLGACGFCEGNAEIAEHAAK 526 (600)
Q Consensus 449 ~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~~g~~~~a~~~~~ 526 (600)
+++|...|+++.......--..+|..++.+..+.|+++.|.+.+++.. ..|+ +.+...+..... ..|++..|...++
T Consensus 119 ~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~-~~~~y~~Ar~~~~ 197 (250)
T COG3063 119 PEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHY-KAGDYAPARLYLE 197 (250)
T ss_pred hHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHH-hcccchHHHHHHH
Confidence 555555555555431111124455555555555555555555555432 2232 233444444444 5555555555555
Q ss_pred HHHhhCCCCCCcHHHHhHHHHhhCCcHHHHHHHHHH
Q 007519 527 RLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDM 562 (600)
Q Consensus 527 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 562 (600)
+...-.+-+.......+.+-.+.|+.+.+.++-..+
T Consensus 198 ~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL 233 (250)
T COG3063 198 RYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQL 233 (250)
T ss_pred HHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 554433334444444455555555555554444433
No 94
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.94 E-value=4e-06 Score=79.48 Aligned_cols=174 Identities=12% Similarity=0.093 Sum_probs=127.3
Q ss_pred hhHHHHHHHHHHHCCCCCChhHHHHHHHHHhcccchhhhHHHHHHHhhhcCCC-chhHHHHHHHHHHhcCChHHHHHHHh
Q 007519 313 FVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESES-DLILENCLISMYAKCGVIDNAYNIFS 391 (600)
Q Consensus 313 ~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~ 391 (600)
.+.....++++...-..--..+|...++...+..-+..|+.+|.++.+.+..+ ++.+++++++.|+. ++.+-|.++|+
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFe 425 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFE 425 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHH
Confidence 56667777776654322223456777787788888999999999999988877 78888889988874 67888999998
Q ss_pred cCC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh--hHHHHHHHHhcccCchHHHHHHHHHHHhhcC--
Q 007519 392 NMV---SRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNS--VTFLGILSACSHAGLVSRGWELFNAMFDVYK-- 464 (600)
Q Consensus 392 ~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-- 464 (600)
.-. ..++.--...+..+...|+-..+..+|++....++.|+. ..|..++.--..-|++..+.++-++....+.
T Consensus 426 LGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~ 505 (656)
T KOG1914|consen 426 LGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPAD 505 (656)
T ss_pred HHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchh
Confidence 765 334445566778888889999999999999888666665 6788888888889999999888888776544
Q ss_pred CCCCcchHHHHHHHHhhcCChHH
Q 007519 465 IQPGPEHYVSMINLLGRAGKIKE 487 (600)
Q Consensus 465 ~~p~~~~~~~l~~~~~~~g~~~~ 487 (600)
..|....-..++..|.=.+....
T Consensus 506 qe~~~~~~~~~v~RY~~~d~~~c 528 (656)
T KOG1914|consen 506 QEYEGNETALFVDRYGILDLYPC 528 (656)
T ss_pred hcCCCChHHHHHHHHhhcccccc
Confidence 33333344445555555554443
No 95
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.93 E-value=5.9e-07 Score=85.06 Aligned_cols=164 Identities=17% Similarity=0.083 Sum_probs=91.6
Q ss_pred HHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChh-HHHHHHHHhcccCchHHH
Q 007519 374 ISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSV-TFLGILSACSHAGLVSRG 452 (600)
Q Consensus 374 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~g~~~~a 452 (600)
..+|.+.++++.|...|.+...+... -....+....+++........- +.|... -...-...+.+.|++..|
T Consensus 305 g~a~~k~~~~~~ai~~~~kaLte~Rt-----~~~ls~lk~~Ek~~k~~e~~a~--~~pe~A~e~r~kGne~Fk~gdy~~A 377 (539)
T KOG0548|consen 305 GNAYTKREDYEGAIKYYQKALTEHRT-----PDLLSKLKEAEKALKEAERKAY--INPEKAEEEREKGNEAFKKGDYPEA 377 (539)
T ss_pred hhhhhhHHhHHHHHHHHHHHhhhhcC-----HHHHHHHHHHHHHHHHHHHHHh--hChhHHHHHHHHHHHHHhccCHHHH
Confidence 34555566677777766664411111 1112222333444444333322 223321 111123445667777888
Q ss_pred HHHHHHHHhhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHhCC-CCCCHH-HHHHHHHHHhhhhCCHHHHHHHHHHHH
Q 007519 453 WELFNAMFDVYKIQP-GPEHYVSMINLLGRAGKIKEAEEFVLRLP-FEPDHR-IWGALLGACGFCEGNAEIAEHAAKRLL 529 (600)
Q Consensus 453 ~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~-~~~~l~~~~~~~~g~~~~a~~~~~~~~ 529 (600)
...|.+++.. .| |...|...+-+|.+.|.+..|++-.+... ..|+.. .|.--..++. ...+++.|...|++++
T Consensus 378 v~~YteAIkr---~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~-~mk~ydkAleay~eal 453 (539)
T KOG0548|consen 378 VKHYTEAIKR---DPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALR-AMKEYDKALEAYQEAL 453 (539)
T ss_pred HHHHHHHHhc---CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 7777777754 45 57777777777778887777776665543 445433 3333333444 5677888888888888
Q ss_pred hhCCCCCCcHHHHhHHHHh
Q 007519 530 ELDPLNAPAHVVLCNIYAA 548 (600)
Q Consensus 530 ~~~p~~~~~~~~l~~~~~~ 548 (600)
+.+|++......+.++...
T Consensus 454 e~dp~~~e~~~~~~rc~~a 472 (539)
T KOG0548|consen 454 ELDPSNAEAIDGYRRCVEA 472 (539)
T ss_pred hcCchhHHHHHHHHHHHHH
Confidence 8888666666665555543
No 96
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.91 E-value=6.2e-07 Score=84.89 Aligned_cols=215 Identities=15% Similarity=0.086 Sum_probs=139.8
Q ss_pred HHHHHHhcccchhhhHHHHHHHhhhcCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCCh----------hhHHHHHH
Q 007519 337 VLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDL----------VSWNSMVM 406 (600)
Q Consensus 337 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~----------~~~~~l~~ 406 (600)
.+.++..+..++..+.+-+....... .+...++....+|...|.+..+............ ..+..+..
T Consensus 229 ~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~ 306 (539)
T KOG0548|consen 229 ELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGN 306 (539)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhh
Confidence 34444445555566666655555544 3444445555566666666555554444331111 11222344
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCCCc-chHHHHHHHHhhcCCh
Q 007519 407 GFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGP-EHYVSMINLLGRAGKI 485 (600)
Q Consensus 407 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~ 485 (600)
++.+.++++.++..|.+.......|+..+ +....+++....+... -+.|.. .-...-+..+.+.|++
T Consensus 307 a~~k~~~~~~ai~~~~kaLte~Rt~~~ls---------~lk~~Ek~~k~~e~~a---~~~pe~A~e~r~kGne~Fk~gdy 374 (539)
T KOG0548|consen 307 AYTKREDYEGAIKYYQKALTEHRTPDLLS---------KLKEAEKALKEAERKA---YINPEKAEEEREKGNEAFKKGDY 374 (539)
T ss_pred hhhhHHhHHHHHHHHHHHhhhhcCHHHHH---------HHHHHHHHHHHHHHHH---hhChhHHHHHHHHHHHHHhccCH
Confidence 56667888888888888766554544322 2233444444443332 345542 1222236778899999
Q ss_pred HHHHHHHHhCC-CCC-CHHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCCCcHHHHhHHHHhhCCcHHHHHHHHHHh
Q 007519 486 KEAEEFVLRLP-FEP-DHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMG 563 (600)
Q Consensus 486 ~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 563 (600)
..|.+.++++. ..| |...|.+...++. +.|.+..|+.-.+..++++|+....|..=+.++....+|++|.+.+.+-.
T Consensus 375 ~~Av~~YteAIkr~P~Da~lYsNRAac~~-kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eal 453 (539)
T KOG0548|consen 375 PEAVKHYTEAIKRDPEDARLYSNRAACYL-KLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEAL 453 (539)
T ss_pred HHHHHHHHHHHhcCCchhHHHHHHHHHHH-HHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999975 556 4567777777777 99999999999999999999999999999999999999999999776655
Q ss_pred hcC
Q 007519 564 LKG 566 (600)
Q Consensus 564 ~~~ 566 (600)
+.+
T Consensus 454 e~d 456 (539)
T KOG0548|consen 454 ELD 456 (539)
T ss_pred hcC
Confidence 443
No 97
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.89 E-value=3.8e-08 Score=90.60 Aligned_cols=249 Identities=12% Similarity=0.091 Sum_probs=152.7
Q ss_pred HHHhcCChHHHHHHHhhCCC--C--ChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhcccchhh
Q 007519 275 GYLSVGQVSNAYYLFHNMPD--R--DAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDL 350 (600)
Q Consensus 275 ~~~~~~~~~~A~~~~~~~~~--~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~ 350 (600)
-+.-.|++..++.-.+ ... + +.....-+.+++...|+++.++. ++... -.|.......+...+...++-+.
T Consensus 10 n~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~---ei~~~-~~~~l~av~~la~y~~~~~~~e~ 84 (290)
T PF04733_consen 10 NQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLS---EIKKS-SSPELQAVRLLAEYLSSPSDKES 84 (290)
T ss_dssp HHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHH---HS-TT-SSCCCHHHHHHHHHHCTSTTHHC
T ss_pred HHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHH---HhccC-CChhHHHHHHHHHHHhCccchHH
Confidence 3445788888886554 222 1 22344556778888888776543 33333 26666666555555554444455
Q ss_pred hHHHHHHHhhhcCC-CchhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 007519 351 GRQIHCVLMKTESE-SDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGT 429 (600)
Q Consensus 351 a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~ 429 (600)
+..-+......... .+..+.......+...|++++|++++... .+.......+..+.+.++++.|.+.++.|.+.
T Consensus 85 ~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~-- 160 (290)
T PF04733_consen 85 ALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQI-- 160 (290)
T ss_dssp HHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--
T ss_pred HHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--
Confidence 54444433333322 23333334445566788899988888776 56666677788888899999999999888763
Q ss_pred CCChhHHHHHHHHhc----ccCchHHHHHHHHHHHhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHH
Q 007519 430 HPNSVTFLGILSACS----HAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRL-PFEP-DHRI 503 (600)
Q Consensus 430 ~p~~~~~~~l~~~~~----~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~ 503 (600)
..| .+...+..++. ..+.+..|.-+|+++.+. ..+++.+.+.++.+....|++++|.+++.+. ...| ++.+
T Consensus 161 ~eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~--~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~ 237 (290)
T PF04733_consen 161 DED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDK--FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDT 237 (290)
T ss_dssp SCC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC--S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHH
T ss_pred CCc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHH
Confidence 333 33344444432 234688888899988763 4567778888888888888888888888774 3444 3455
Q ss_pred HHHHHHHHhhhhCCH-HHHHHHHHHHHhhCCCCC
Q 007519 504 WGALLGACGFCEGNA-EIAEHAAKRLLELDPLNA 536 (600)
Q Consensus 504 ~~~l~~~~~~~~g~~-~~a~~~~~~~~~~~p~~~ 536 (600)
+.+++.... ..|+. +.+.+.+.++....|+++
T Consensus 238 LaNliv~~~-~~gk~~~~~~~~l~qL~~~~p~h~ 270 (290)
T PF04733_consen 238 LANLIVCSL-HLGKPTEAAERYLSQLKQSNPNHP 270 (290)
T ss_dssp HHHHHHHHH-HTT-TCHHHHHHHHHCHHHTTTSH
T ss_pred HHHHHHHHH-HhCCChhHHHHHHHHHHHhCCCCh
Confidence 666666555 66766 667788888888888433
No 98
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.89 E-value=3.1e-06 Score=82.50 Aligned_cols=255 Identities=11% Similarity=0.011 Sum_probs=145.1
Q ss_pred HHHHhCCChhHHHHHHHHHHHCCCCCChh-HHHHHHHHHhc----ccchhhhHHHHHHHhhhcCCCchhHHHHHHHHHHh
Q 007519 305 SGLVQNELFVEATYLFMEMRAHGVPPLNA-TFSVLFGAAGA----TANIDLGRQIHCVLMKTESESDLILENCLISMYAK 379 (600)
Q Consensus 305 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 379 (600)
..+...|++++|...+++..+. .|+.. .+.. ...+.. .+....+...+.. .....+........+...+..
T Consensus 51 ~~~~~~g~~~~A~~~~~~~l~~--~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~a~~~~~ 126 (355)
T cd05804 51 LSAWIAGDLPKALALLEQLLDD--YPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPL-WAPENPDYWYLLGMLAFGLEE 126 (355)
T ss_pred HHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHH-hHHHHHhcccccCchhHHHHHhc-cCcCCCCcHHHHHHHHHHHHH
Confidence 3456678888888888877765 34332 3321 112222 3333444444333 111112223344455667788
Q ss_pred cCChHHHHHHHhcCC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCCh--hHHHHHHHHhcccCchHHHH
Q 007519 380 CGVIDNAYNIFSNMV---SRDLVSWNSMVMGFSHHGLANETLKVFESMLESGT-HPNS--VTFLGILSACSHAGLVSRGW 453 (600)
Q Consensus 380 ~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~p~~--~~~~~l~~~~~~~g~~~~a~ 453 (600)
.|++++|...+++.. +.+...+..+..++...|++++|...+++...... .|+. ..+..+...+...|++++|.
T Consensus 127 ~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~ 206 (355)
T cd05804 127 AGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAAL 206 (355)
T ss_pred cCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHH
Confidence 888999988888876 44566777788888889999999999888776421 1222 23456677788889999999
Q ss_pred HHHHHHHhhcCCCCCcchH-H--HHHHHHhhcCChHHHHHH---HHhCC-CCCC-HHHH--HHHHHHHhhhhCCHHHHHH
Q 007519 454 ELFNAMFDVYKIQPGPEHY-V--SMINLLGRAGKIKEAEEF---VLRLP-FEPD-HRIW--GALLGACGFCEGNAEIAEH 523 (600)
Q Consensus 454 ~~~~~~~~~~~~~p~~~~~-~--~l~~~~~~~g~~~~A~~~---~~~~~-~~p~-~~~~--~~l~~~~~~~~g~~~~a~~ 523 (600)
++++++.......+..... + .+...+...|..+.+.+. .+... ..|. ...+ .....++. ..|+.+.|..
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~-~~~~~~~a~~ 285 (355)
T cd05804 207 AIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALA-GAGDKDALDK 285 (355)
T ss_pred HHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHh-cCCCHHHHHH
Confidence 9998875421111111111 1 223333444433333322 11111 1011 1112 23344455 7888999998
Q ss_pred HHHHHHhhCCC---------CCCcHHHHhHHHHhhCCcHHHHHHHHHHhh
Q 007519 524 AAKRLLELDPL---------NAPAHVVLCNIYAASGRHVEEHKLRMDMGL 564 (600)
Q Consensus 524 ~~~~~~~~~p~---------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 564 (600)
.++.+....-. ........+.++...|++++|.+.+.....
T Consensus 286 ~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~ 335 (355)
T cd05804 286 LLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRD 335 (355)
T ss_pred HHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 88887662211 234455667778899999999996655443
No 99
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.85 E-value=1.7e-07 Score=86.34 Aligned_cols=80 Identities=18% Similarity=0.286 Sum_probs=34.2
Q ss_pred ChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCC-CcchHHHHHHHHhhcCCh-HHHHH
Q 007519 413 LANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQP-GPEHYVSMINLLGRAGKI-KEAEE 490 (600)
Q Consensus 413 ~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~-~~A~~ 490 (600)
.+.+|..+|+++.+. ..++..+.+.+..++...|++++|.++++++... .| ++.+...++.+....|+. +.+.+
T Consensus 182 ~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~---~~~~~d~LaNliv~~~~~gk~~~~~~~ 257 (290)
T PF04733_consen 182 KYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEK---DPNDPDTLANLIVCSLHLGKPTEAAER 257 (290)
T ss_dssp CCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC----CCHHHHHHHHHHHHHHTT-TCHHHHH
T ss_pred hHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh---ccCCHHHHHHHHHHHHHhCCChhHHHH
Confidence 345555555554332 3344444444444455555555555555544321 23 234444444444444444 33444
Q ss_pred HHHhCC
Q 007519 491 FVLRLP 496 (600)
Q Consensus 491 ~~~~~~ 496 (600)
++..+.
T Consensus 258 ~l~qL~ 263 (290)
T PF04733_consen 258 YLSQLK 263 (290)
T ss_dssp HHHHCH
T ss_pred HHHHHH
Confidence 444443
No 100
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.83 E-value=8.3e-06 Score=72.87 Aligned_cols=187 Identities=13% Similarity=0.107 Sum_probs=93.7
Q ss_pred cccchhhhHHHHHHHhhhcCCCchhHHHHHHHHHHhcCChHHHHHHHhcC---CCCChhhHHHHHHHHHhcCChHHHHHH
Q 007519 344 ATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNM---VSRDLVSWNSMVMGFSHHGLANETLKV 420 (600)
Q Consensus 344 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~ 420 (600)
-.|+...+......+.+.. +.+...+..-..+|...|++..|+.-++.. ...+...+-.+-..+...|+.+.++..
T Consensus 167 ~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~ 245 (504)
T KOG0624|consen 167 GSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKE 245 (504)
T ss_pred cCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHH
Confidence 3444444444444443321 224444445555555555555554443332 234444444445555555555555555
Q ss_pred HHHHHHcCCCCChhH----HHHH---------HHHhcccCchHHHHHHHHHHHhhcCCCCC-----cchHHHHHHHHhhc
Q 007519 421 FESMLESGTHPNSVT----FLGI---------LSACSHAGLVSRGWELFNAMFDVYKIQPG-----PEHYVSMINLLGRA 482 (600)
Q Consensus 421 ~~~m~~~~~~p~~~~----~~~l---------~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~ 482 (600)
.++..+ +.|+... |..+ +......+.+.++.+-.+...+. .|. ...+..+-.++...
T Consensus 246 iRECLK--ldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~---ep~~~~ir~~~~r~~c~C~~~d 320 (504)
T KOG0624|consen 246 IRECLK--LDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKN---EPEETMIRYNGFRVLCTCYRED 320 (504)
T ss_pred HHHHHc--cCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc---CCcccceeeeeeheeeeccccc
Confidence 555543 3444321 1111 01123345555555555555542 332 22333445555666
Q ss_pred CChHHHHHHHHhCC-CCCC-HHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCCC
Q 007519 483 GKIKEAEEFVLRLP-FEPD-HRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAP 537 (600)
Q Consensus 483 g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 537 (600)
|++.+|++...+.. ..|+ ..++-.-..++. -..+++.|+.-|+++.+.+|+|..
T Consensus 321 ~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l-~dE~YD~AI~dye~A~e~n~sn~~ 376 (504)
T KOG0624|consen 321 EQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYL-GDEMYDDAIHDYEKALELNESNTR 376 (504)
T ss_pred CCHHHHHHHHHHHHhcCchHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHhcCcccHH
Confidence 67777776666543 4454 455655666666 666677777777777776665543
No 101
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.77 E-value=6.3e-06 Score=73.64 Aligned_cols=305 Identities=13% Similarity=0.093 Sum_probs=208.2
Q ss_pred ChhhHHHHHHHHHhcCChhhHHHHhcccCCCCchhHHHHH---HHHHhcCChHHHHHHHhhCCCCChhhHHH---HHHHH
Q 007519 234 NVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMI---DGYLSVGQVSNAYYLFHNMPDRDAVAWTA---MISGL 307 (600)
Q Consensus 234 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~---~~~~~~~~~~~A~~~~~~~~~~~~~~~~~---li~~~ 307 (600)
++.--.-+.+.+...|++..|+..|......|+..|.++. ..|...|+...|+.-+.++.+..+..+.+ -...+
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vl 116 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVL 116 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhh
Confidence 4444556777888888999999999888877777776664 46777888888877777766532223322 33467
Q ss_pred HhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhcccchhhhHHHHHHHhhhcCCCchhHHHHHHHHHHhcCChHHHH
Q 007519 308 VQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAY 387 (600)
Q Consensus 308 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 387 (600)
.+.|.++.|..=|+..++. .|+..+-. .+..+....++- ......+..+...|+...|+
T Consensus 117 lK~Gele~A~~DF~~vl~~--~~s~~~~~---eaqskl~~~~e~----------------~~l~~ql~s~~~~GD~~~ai 175 (504)
T KOG0624|consen 117 LKQGELEQAEADFDQVLQH--EPSNGLVL---EAQSKLALIQEH----------------WVLVQQLKSASGSGDCQNAI 175 (504)
T ss_pred hhcccHHHHHHHHHHHHhc--CCCcchhH---HHHHHHHhHHHH----------------HHHHHHHHHHhcCCchhhHH
Confidence 7888888888888888876 34332211 111111111111 11122344455678999998
Q ss_pred HHHhcCC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccCchHHHHHHHHHHHhhcC
Q 007519 388 NIFSNMV---SRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYK 464 (600)
Q Consensus 388 ~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 464 (600)
.....+. +.|...+..-..+|...|++..|+.=++...+.. ..+..++--+-..+...|+.+.++..+++.. .
T Consensus 176 ~~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECL---K 251 (504)
T KOG0624|consen 176 EMITHLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECL---K 251 (504)
T ss_pred HHHHHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHH---c
Confidence 8888775 5678888888899999999999998887776643 3344555556677788899999999998887 4
Q ss_pred CCCCc-chHHH---H---------HHHHhhcCChHHHHHHHHhC-CCCCCH--HHH---HHHHHHHhhhhCCHHHHHHHH
Q 007519 465 IQPGP-EHYVS---M---------INLLGRAGKIKEAEEFVLRL-PFEPDH--RIW---GALLGACGFCEGNAEIAEHAA 525 (600)
Q Consensus 465 ~~p~~-~~~~~---l---------~~~~~~~g~~~~A~~~~~~~-~~~p~~--~~~---~~l~~~~~~~~g~~~~a~~~~ 525 (600)
+.||- .+|.. | +....+.++|.++.+..++. ...|.. ..+ ..+-.++. ..|++.+|++..
T Consensus 252 ldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~-~d~~~~eAiqqC 330 (504)
T KOG0624|consen 252 LDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYR-EDEQFGEAIQQC 330 (504)
T ss_pred cCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeeccc-ccCCHHHHHHHH
Confidence 57762 22221 1 12334667777777776663 455542 122 22333344 789999999999
Q ss_pred HHHHhhCCCCCCcHHHHhHHHHhhCCcHHHHHHHHHHhh
Q 007519 526 KRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGL 564 (600)
Q Consensus 526 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 564 (600)
.+.++.+|+|..++..-+.+|.-...+++|+.=++...+
T Consensus 331 ~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e 369 (504)
T KOG0624|consen 331 KEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALE 369 (504)
T ss_pred HHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999996655544
No 102
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.75 E-value=4.7e-06 Score=72.90 Aligned_cols=279 Identities=8% Similarity=-0.025 Sum_probs=188.5
Q ss_pred chhHHHHHHHhcCChhhHHHHhccCCC--C-CcchHHHHHHHHHcCCChhHHHHHhhhcCC--CChhhHHH-HHHHHHhc
Q 007519 13 HLTSSITKYSKRGFIDEAKALFQLMPQ--R-NVVSYNAMLSGFLQNGRLSEARRLFEEMPE--RNVVSWTA-MICGLADA 86 (600)
Q Consensus 13 ~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~-l~~~~~~~ 86 (600)
-++..+..+.+..++++|++++..-.+ | +......|..+|....++..|-..|+++-. |....|.. -.+.+.+.
T Consensus 12 eftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A 91 (459)
T KOG4340|consen 12 EFTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKA 91 (459)
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHh
Confidence 367888889999999999999988765 3 555677778889999999999999999876 54444433 24567789
Q ss_pred CChHHHHHHhhcCCC-CCceeHHHHHH--HHHHCCChhHHHHHhhcCCC-CCcccHHHHHHHHHhcCCHhHHHHHHHhcc
Q 007519 87 GRVCEARKLFEEMPE-RNVVSWNSMVV--GLIRNGELNEARKVFNSMPI-KNVISWNAMIAGYVECCMMGEAIVLFEEME 162 (600)
Q Consensus 87 g~~~~A~~~~~~~~~-~~~~~~~~l~~--~~~~~~~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 162 (600)
+.+.+|+++...|.. ++...-..-+. .....+|+..+..+.++... .+..+.........+.|+++.|.+-|+...
T Consensus 92 ~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAl 171 (459)
T KOG4340|consen 92 CIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAAL 171 (459)
T ss_pred cccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHH
Confidence 999999999999887 33332222222 23457899999999999984 666666666677778999999999999888
Q ss_pred cC----CchhHHHHHHHHHhcCChhHHHHHHccCCC-----------------CCcc---------------hHHHHHHH
Q 007519 163 ER----NVVTWTSMISGYCRAGEVEEGYCLFRRMPR-----------------KNVV---------------SWTAMIGG 206 (600)
Q Consensus 163 ~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----------------~~~~---------------~~~~li~~ 206 (600)
+. ....|+. .-++.+.|+.+.|++...++.+ +|+. ++|.-...
T Consensus 172 qvsGyqpllAYni-ALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAI 250 (459)
T KOG4340|consen 172 QVSGYQPLLAYNL-ALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAI 250 (459)
T ss_pred hhcCCCchhHHHH-HHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhh
Confidence 52 2344544 4456677899999988877653 1211 12333333
Q ss_pred HHhcCChhHHHHHHHHHHhhhcCCCCCChhhHHHHHH--HHHhcCChhhHHHHhcccCCCCchhHHHHHHHHHhcCChHH
Q 007519 207 FAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMIN--GYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSN 284 (600)
Q Consensus 207 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 284 (600)
+.+.|+++.|.+.+.+|--. ..-..|+.|...+.- +-.+-++--.-++++-.+.+-...++..++-.|++..-++-
T Consensus 251 eyq~~n~eAA~eaLtDmPPR--aE~elDPvTLHN~Al~n~~~~p~~g~~KLqFLL~~nPfP~ETFANlLllyCKNeyf~l 328 (459)
T KOG4340|consen 251 EYQLRNYEAAQEALTDMPPR--AEEELDPVTLHNQALMNMDARPTEGFEKLQFLLQQNPFPPETFANLLLLYCKNEYFDL 328 (459)
T ss_pred hhhcccHHHHHHHhhcCCCc--ccccCCchhhhHHHHhcccCCccccHHHHHHHHhcCCCChHHHHHHHHHHhhhHHHhH
Confidence 45677888888777777432 122345556554432 22222332333344444445566677788888888888888
Q ss_pred HHHHHhhCCC
Q 007519 285 AYYLFHNMPD 294 (600)
Q Consensus 285 A~~~~~~~~~ 294 (600)
|-.++.+-..
T Consensus 329 AADvLAEn~~ 338 (459)
T KOG4340|consen 329 AADVLAENAH 338 (459)
T ss_pred HHHHHhhCcc
Confidence 8777766544
No 103
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.75 E-value=2.8e-06 Score=74.25 Aligned_cols=281 Identities=10% Similarity=0.084 Sum_probs=153.6
Q ss_pred HHHHHHHHHhcCChhhHHHHhcccCCC---CchhHHHHHHHHHhcCChHHHHHHHhhCCC--CChhhHHH-HHHHHHhCC
Q 007519 238 CNSMINGYIRFGRLEEAQNLFDTVPVR---DEISWTSMIDGYLSVGQVSNAYYLFHNMPD--RDAVAWTA-MISGLVQNE 311 (600)
Q Consensus 238 ~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~-li~~~~~~g 311 (600)
+.+++..+.+..++..|++++....+. +....+.+..+|....++..|-..|+++.. |...-|.. -...+-+.+
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~ 92 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKAC 92 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhc
Confidence 445555566667777777776655432 344556667777777777777777776654 32222221 233455666
Q ss_pred ChhHHHHHHHHHHHCCCCCChhHHHHHHH--HHhcccchhhhHHHHHHHhhhcCCCchhHHHHHHHHHHhcCChHHHHHH
Q 007519 312 LFVEATYLFMEMRAHGVPPLNATFSVLFG--AAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNI 389 (600)
Q Consensus 312 ~~~~a~~~~~~m~~~g~~p~~~~~~~l~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 389 (600)
.+..|+++...|... |+...-..-+. ...+. +++..+..+
T Consensus 93 i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse-----------------------------------~Dl~g~rsL 134 (459)
T KOG4340|consen 93 IYADALRVAFLLLDN---PALHSRVLQLQAAIKYSE-----------------------------------GDLPGSRSL 134 (459)
T ss_pred ccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhccc-----------------------------------ccCcchHHH
Confidence 677777776666542 21111111111 11233 344444444
Q ss_pred HhcCC-CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccCchHHHHHHHHHHHhhcCCC--
Q 007519 390 FSNMV-SRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQ-- 466 (600)
Q Consensus 390 ~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-- 466 (600)
.++.. ..+..+.+.......+.|++++|.+-|+...+-+--.....|+..+ +..+.|+.+.|++...+++++ |+.
T Consensus 135 veQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieR-G~r~H 212 (459)
T KOG4340|consen 135 VEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIER-GIRQH 212 (459)
T ss_pred HHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHh-hhhcC
Confidence 44444 2333333333333344455555555555444432111222333222 222344444444444444433 211
Q ss_pred -----------CC---------------cchHHHHHHHHhhcCChHHHHHHHHhCC----CCCCHHHHHHHHHHHhhhhC
Q 007519 467 -----------PG---------------PEHYVSMINLLGRAGKIKEAEEFVLRLP----FEPDHRIWGALLGACGFCEG 516 (600)
Q Consensus 467 -----------p~---------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~~~~~~~l~~~~~~~~g 516 (600)
|| ...+|.-...+.+.|+++.|.+.+..|| ...|+.|++.+.-.- ..+
T Consensus 213 PElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n--~~~ 290 (459)
T KOG4340|consen 213 PELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN--MDA 290 (459)
T ss_pred CccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc--ccC
Confidence 11 1122233344568899999999999987 445777777664432 356
Q ss_pred CHHHHHHHHHHHHhhCCCCCCcHHHHhHHHHhhCCcHHHHHHHH
Q 007519 517 NAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRM 560 (600)
Q Consensus 517 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 560 (600)
+.....+-++-+++++|--+.++..+...|++..-++-|..++-
T Consensus 291 ~p~~g~~KLqFLL~~nPfP~ETFANlLllyCKNeyf~lAADvLA 334 (459)
T KOG4340|consen 291 RPTEGFEKLQFLLQQNPFPPETFANLLLLYCKNEYFDLAADVLA 334 (459)
T ss_pred CccccHHHHHHHHhcCCCChHHHHHHHHHHhhhHHHhHHHHHHh
Confidence 67777777778888899777899999999999998888888663
No 104
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.74 E-value=2e-05 Score=76.82 Aligned_cols=55 Identities=9% Similarity=-0.037 Sum_probs=25.6
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhcccchhhhHHHHHH
Q 007519 302 AMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCV 357 (600)
Q Consensus 302 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 357 (600)
.+...+...|++++|...+++..+.. +.+...+..+..++...|++++|...+..
T Consensus 119 ~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~ 173 (355)
T cd05804 119 MLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMES 173 (355)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 33445556666666666666665542 22222333333344444444444444443
No 105
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.71 E-value=2.6e-05 Score=86.38 Aligned_cols=318 Identities=13% Similarity=0.026 Sum_probs=178.0
Q ss_pred HHhcCChhhHHHHhcccC----CCCchhHHHHHHHHHhcCChHHHHHHHhhCCC----C----C--h--hhHHHHHHHHH
Q 007519 245 YIRFGRLEEAQNLFDTVP----VRDEISWTSMIDGYLSVGQVSNAYYLFHNMPD----R----D--A--VAWTAMISGLV 308 (600)
Q Consensus 245 ~~~~~~~~~a~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~----~--~--~~~~~li~~~~ 308 (600)
....|+++.+..++..+. ..++.........+...|++++|...+..... . + . .....+...+.
T Consensus 384 l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 463 (903)
T PRK04841 384 LFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAI 463 (903)
T ss_pred HHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHH
Confidence 344566666666666553 12333333444555667888887777765421 1 1 1 11122233456
Q ss_pred hCCChhHHHHHHHHHHHCCCCCCh----hHHHHHHHHHhcccchhhhHHHHHHHhhhcCC---C--chhHHHHHHHHHHh
Q 007519 309 QNELFVEATYLFMEMRAHGVPPLN----ATFSVLFGAAGATANIDLGRQIHCVLMKTESE---S--DLILENCLISMYAK 379 (600)
Q Consensus 309 ~~g~~~~a~~~~~~m~~~g~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~--~~~~~~~l~~~~~~ 379 (600)
..|++++|...+++....-...+. .....+...+...|+++.|...+......... + .......+...+..
T Consensus 464 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~ 543 (903)
T PRK04841 464 NDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFA 543 (903)
T ss_pred hCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHH
Confidence 778888888888877653111111 12333444566788888888877765542111 1 12234455666777
Q ss_pred cCChHHHHHHHhcCCC-------C----ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcC--CCCC--hhHHHHHHHHhc
Q 007519 380 CGVIDNAYNIFSNMVS-------R----DLVSWNSMVMGFSHHGLANETLKVFESMLESG--THPN--SVTFLGILSACS 444 (600)
Q Consensus 380 ~~~~~~A~~~~~~~~~-------~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~--~~p~--~~~~~~l~~~~~ 444 (600)
.|++++|...+++... + ....+..+...+...|++++|...+.+..... ..+. ...+..+.....
T Consensus 544 ~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~ 623 (903)
T PRK04841 544 QGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISL 623 (903)
T ss_pred CCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHH
Confidence 8888888887766531 1 11233344555667788888888887765431 1121 223333445666
Q ss_pred ccCchHHHHHHHHHHHhhcCCCCCcchH-----HHHHHHHhhcCChHHHHHHHHhCCCC--CCHHH----HHHHHHHHhh
Q 007519 445 HAGLVSRGWELFNAMFDVYKIQPGPEHY-----VSMINLLGRAGKIKEAEEFVLRLPFE--PDHRI----WGALLGACGF 513 (600)
Q Consensus 445 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~-----~~l~~~~~~~g~~~~A~~~~~~~~~~--p~~~~----~~~l~~~~~~ 513 (600)
..|+.+.|.+.+..+............+ ...+..+...|+.+.|.+++...... ..... +..+..++.
T Consensus 624 ~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~- 702 (903)
T PRK04841 624 ARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQI- 702 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHH-
Confidence 7788888888887775421111111001 11123445578888888887665411 11111 233444455
Q ss_pred hhCCHHHHHHHHHHHHhhCC------CCCCcHHHHhHHHHhhCCcHHHHHHHHHHh
Q 007519 514 CEGNAEIAEHAAKRLLELDP------LNAPAHVVLCNIYAASGRHVEEHKLRMDMG 563 (600)
Q Consensus 514 ~~g~~~~a~~~~~~~~~~~p------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 563 (600)
..|+.++|...++++.+... ....++..++.++.+.|+.++|...+....
T Consensus 703 ~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al 758 (903)
T PRK04841 703 LLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEAL 758 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 77888888888888877421 122456677788888888888888554443
No 106
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.71 E-value=1.1e-06 Score=79.81 Aligned_cols=180 Identities=11% Similarity=-0.001 Sum_probs=112.2
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHhcCC--CC-Ch---hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChh----H
Q 007519 366 DLILENCLISMYAKCGVIDNAYNIFSNMV--SR-DL---VSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSV----T 435 (600)
Q Consensus 366 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~-~~---~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~----~ 435 (600)
....+..+...+...|++++|...|+++. .| +. ..+..+..++...|++++|...++++.+. .|+.. +
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a 109 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL--HPNHPDADYA 109 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCchHHH
Confidence 44455566667777777777777777665 12 22 35566667777777777777777777764 23221 2
Q ss_pred HHHHHHHhccc--------CchHHHHHHHHHHHhhcCCCCCc-chHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHH
Q 007519 436 FLGILSACSHA--------GLVSRGWELFNAMFDVYKIQPGP-EHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGA 506 (600)
Q Consensus 436 ~~~l~~~~~~~--------g~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ 506 (600)
+..+..++... |+++.|.+.++.+.+. .|+. ..+..+..... ..... ......
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~~~~----~~~~~-----------~~~~~~ 171 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKKRMDY----LRNRL-----------AGKELY 171 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHHHHH----HHHHH-----------HHHHHH
Confidence 33333444333 5677777777777654 3432 22221111100 00000 000113
Q ss_pred HHHHHhhhhCCHHHHHHHHHHHHhhCCCCC---CcHHHHhHHHHhhCCcHHHHHHHHHHhhcC
Q 007519 507 LLGACGFCEGNAEIAEHAAKRLLELDPLNA---PAHVVLCNIYAASGRHVEEHKLRMDMGLKG 566 (600)
Q Consensus 507 l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 566 (600)
+...+. ..|++.+|+..++++++..|+++ ..+..++.++...|++++|..+++.+....
T Consensus 172 ~a~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~ 233 (235)
T TIGR03302 172 VARFYL-KRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANY 233 (235)
T ss_pred HHHHHH-HcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 344556 88999999999999999987654 688999999999999999999888876543
No 107
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.70 E-value=1.2e-06 Score=76.10 Aligned_cols=118 Identities=10% Similarity=0.053 Sum_probs=75.7
Q ss_pred cCchHHHHHHHHHHHhhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHhhhhCC--HHH
Q 007519 446 AGLVSRGWELFNAMFDVYKIQP-GPEHYVSMINLLGRAGKIKEAEEFVLRLP-FEP-DHRIWGALLGACGFCEGN--AEI 520 (600)
Q Consensus 446 ~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~g~--~~~ 520 (600)
.++.+++...++...+. .| +...|..|+..|...|++++|...+++.. ..| +...+..+..++....|+ .++
T Consensus 52 ~~~~~~~i~~l~~~L~~---~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~ 128 (198)
T PRK10370 52 QQTPEAQLQALQDKIRA---NPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQ 128 (198)
T ss_pred chhHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHH
Confidence 45556666666665543 44 56677777777777777777777777653 444 344455555443215555 477
Q ss_pred HHHHHHHHHhhCCCCCCcHHHHhHHHHhhCCcHHHHHHHHHHhhcC
Q 007519 521 AEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKG 566 (600)
Q Consensus 521 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 566 (600)
|..+++++++.+|+++.++..++.++.+.|++++|...|+.+.+..
T Consensus 129 A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 129 TREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLN 174 (198)
T ss_pred HHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 7777777777777777777777777777777777777666665443
No 108
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.66 E-value=3.5e-07 Score=75.11 Aligned_cols=108 Identities=13% Similarity=-0.026 Sum_probs=72.0
Q ss_pred HHHHHHhcccCchHHHHHHHHHHHhhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHhh
Q 007519 437 LGILSACSHAGLVSRGWELFNAMFDVYKIQP-GPEHYVSMINLLGRAGKIKEAEEFVLRLP-FEP-DHRIWGALLGACGF 513 (600)
Q Consensus 437 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~ 513 (600)
.....++...|++++|...|+.+.. ..| +...+..++.++.+.|++++|...|++.. ..| +...+..+..++.
T Consensus 28 ~~~g~~~~~~g~~~~A~~~~~~al~---~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~- 103 (144)
T PRK15359 28 YASGYASWQEGDYSRAVIDFSWLVM---AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLK- 103 (144)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH---cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH-
Confidence 3445556677777777777777664 345 56667777777777777777777777753 344 4455555555666
Q ss_pred hhCCHHHHHHHHHHHHhhCCCCCCcHHHHhHHHHh
Q 007519 514 CEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAA 548 (600)
Q Consensus 514 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 548 (600)
..|+.++|+..+++++++.|+++..+...+.++..
T Consensus 104 ~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~ 138 (144)
T PRK15359 104 MMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIM 138 (144)
T ss_pred HcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 77777777777777777777777777666665543
No 109
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.66 E-value=4.4e-06 Score=87.81 Aligned_cols=233 Identities=10% Similarity=0.058 Sum_probs=174.5
Q ss_pred hhHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHhcCChhhHHHHhcccCC--------CCchhHHHHHHHHHhcCChHH
Q 007519 213 HKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPV--------RDEISWTSMIDGYLSVGQVSN 284 (600)
Q Consensus 213 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--------~~~~~~~~l~~~~~~~~~~~~ 284 (600)
++.|.+.-+.++. .+.++..|-..+......+++++|.++.+++.+ .-..+|.++++.-..-|.-+.
T Consensus 1441 pesaeDferlvrs-----sPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~ees 1515 (1710)
T KOG1070|consen 1441 PESAEDFERLVRS-----SPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEES 1515 (1710)
T ss_pred CcCHHHHHHHHhc-----CCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHH
Confidence 3445555555553 244466777888888888999999888888762 134478888888888888888
Q ss_pred HHHHHhhCCC-C-ChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhcccchhhhHHHHHHHhhhc
Q 007519 285 AYYLFHNMPD-R-DAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTE 362 (600)
Q Consensus 285 A~~~~~~~~~-~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 362 (600)
..++|+++.+ - ....|..|...|.+.+.+++|.++|+.|.+. ..-....|...+..+.+.++-+.|+.++.++.+.-
T Consensus 1516 l~kVFeRAcqycd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~l 1594 (1710)
T KOG1070|consen 1516 LKKVFERACQYCDAYTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSL 1594 (1710)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhc
Confidence 8888888766 2 3457888999999999999999999999876 34566778888888888888899999998877764
Q ss_pred CC-CchhHHHHHHHHHHhcCChHHHHHHHhcCC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh--hHH
Q 007519 363 SE-SDLILENCLISMYAKCGVIDNAYNIFSNMV---SRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNS--VTF 436 (600)
Q Consensus 363 ~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~--~~~ 436 (600)
.+ -......-.++.-.+.|+.+.++.+|+... +.-...|+.++..-.++|+.+.+..+|++....++.|.. ..|
T Consensus 1595 Pk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfff 1674 (1710)
T KOG1070|consen 1595 PKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFF 1674 (1710)
T ss_pred chhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHH
Confidence 43 234455566677778899999999998876 456778999999999999999999999999988887765 445
Q ss_pred HHHHHHhcccCchHH
Q 007519 437 LGILSACSHAGLVSR 451 (600)
Q Consensus 437 ~~l~~~~~~~g~~~~ 451 (600)
.-.+..--..|+-..
T Consensus 1675 KkwLeyEk~~Gde~~ 1689 (1710)
T KOG1070|consen 1675 KKWLEYEKSHGDEKN 1689 (1710)
T ss_pred HHHHHHHHhcCchhh
Confidence 555554444454333
No 110
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.60 E-value=2.1e-06 Score=82.24 Aligned_cols=138 Identities=16% Similarity=0.098 Sum_probs=99.8
Q ss_pred HHHHHHHHHH-HcCCCCChhHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHH
Q 007519 416 ETLKVFESML-ESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQP-GPEHYVSMINLLGRAGKIKEAEEFVL 493 (600)
Q Consensus 416 ~a~~~~~~m~-~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~ 493 (600)
...++|-++. ..+..+|......|.-.|--.|++++|..+|+.++. ++| |..+||.|+-.++...+.++|...|+
T Consensus 412 ~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~---v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~ 488 (579)
T KOG1125|consen 412 HIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQ---VKPNDYLLWNRLGATLANGNRSEEAISAYN 488 (579)
T ss_pred HHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHh---cCCchHHHHHHhhHHhcCCcccHHHHHHHH
Confidence 3444444443 344346666666777777788999999999998885 477 68889999999999999999999998
Q ss_pred hCC-CCCCH-HHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCC----------CCcHHHHhHHHHhhCCcHHHHH
Q 007519 494 RLP-FEPDH-RIWGALLGACGFCEGNAEIAEHAAKRLLELDPLN----------APAHVVLCNIYAASGRHVEEHK 557 (600)
Q Consensus 494 ~~~-~~p~~-~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~----------~~~~~~l~~~~~~~g~~~~A~~ 557 (600)
+.. +.|.. .+...+.-+|. ..|.+++|..+|-.++.+.+.+ ..++..|=.++.-.++.|-+.+
T Consensus 489 rALqLqP~yVR~RyNlgIS~m-NlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~ 563 (579)
T KOG1125|consen 489 RALQLQPGYVRVRYNLGISCM-NLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQE 563 (579)
T ss_pred HHHhcCCCeeeeehhhhhhhh-hhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHH
Confidence 865 77864 46777788888 9999999999999988866541 1245555555555666554433
No 111
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.60 E-value=6e-07 Score=73.73 Aligned_cols=106 Identities=13% Similarity=-0.018 Sum_probs=89.2
Q ss_pred HHHHHHHhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHhhhhCCHHHHHHHHHHHHhh
Q 007519 454 ELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLP-FEP-DHRIWGALLGACGFCEGNAEIAEHAAKRLLEL 531 (600)
Q Consensus 454 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~ 531 (600)
.++++..+ +.|+ .+..++..+...|++++|...|+... ..| +...+..+..++. ..|++++|+..|++++++
T Consensus 14 ~~~~~al~---~~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~-~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 14 DILKQLLS---VDPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWM-MLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHHH---cCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH-HHhhHHHHHHHHHHHHhc
Confidence 45666653 3565 36678899999999999999999875 555 5667788888888 999999999999999999
Q ss_pred CCCCCCcHHHHhHHHHhhCCcHHHHHHHHHHhhc
Q 007519 532 DPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLK 565 (600)
Q Consensus 532 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 565 (600)
+|+++.++..++.++...|++++|...++...+.
T Consensus 88 ~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 88 DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKM 121 (144)
T ss_pred CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999977665543
No 112
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.57 E-value=6.8e-05 Score=83.14 Aligned_cols=317 Identities=11% Similarity=-0.042 Sum_probs=143.8
Q ss_pred HhcCCHhHHHHHHHhcc----cCCchhHHHHHHHHHhcCChhHHHHHHccCCC----CC---c-----chHHHHHHHHHh
Q 007519 146 VECCMMGEAIVLFEEME----ERNVVTWTSMISGYCRAGEVEEGYCLFRRMPR----KN---V-----VSWTAMIGGFAW 209 (600)
Q Consensus 146 ~~~~~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~---~-----~~~~~li~~~~~ 209 (600)
...|+++.+...++.+. ..+..........+...|++++|...+..... .+ . .....+...+..
T Consensus 385 ~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 464 (903)
T PRK04841 385 FNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAIN 464 (903)
T ss_pred HhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHh
Confidence 34455555555555442 11222223333444555666666655543321 00 0 011112233445
Q ss_pred cCChhHHHHHHHHHHhhhcCCCCC-ChhhHHHHHHHHHhcCChhhHHHHhcccC-------CCC--chhHHHHHHHHHhc
Q 007519 210 NGFHKESLLLFIEMKGICDNGNNC-NVQSCNSMINGYIRFGRLEEAQNLFDTVP-------VRD--EISWTSMIDGYLSV 279 (600)
Q Consensus 210 ~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-------~~~--~~~~~~l~~~~~~~ 279 (600)
.|+++.|...++........+..+ -....+.+...+...|++++|...+.+.. .+. ......+...+...
T Consensus 465 ~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~ 544 (903)
T PRK04841 465 DGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQ 544 (903)
T ss_pred CCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHC
Confidence 666777776666665421100000 01223344444556666666666665554 111 11233444555666
Q ss_pred CChHHHHHHHhhCCC-------CC----hhhHHHHHHHHHhCCChhHHHHHHHHHHHCC--CCCC--hhHHHHHHHHHhc
Q 007519 280 GQVSNAYYLFHNMPD-------RD----AVAWTAMISGLVQNELFVEATYLFMEMRAHG--VPPL--NATFSVLFGAAGA 344 (600)
Q Consensus 280 ~~~~~A~~~~~~~~~-------~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g--~~p~--~~~~~~l~~~~~~ 344 (600)
|++++|...+++... ++ ...+..+...+...|++++|...+.+..... ..+. ...+..+......
T Consensus 545 G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~ 624 (903)
T PRK04841 545 GFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLA 624 (903)
T ss_pred CCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHH
Confidence 666666666554322 01 1122333444555567777666666554321 1111 1122223334556
Q ss_pred ccchhhhHHHHHHHhhhcCCCc-hhHH-----HHHHHHHHhcCChHHHHHHHhcCCCCCh-------hhHHHHHHHHHhc
Q 007519 345 TANIDLGRQIHCVLMKTESESD-LILE-----NCLISMYAKCGVIDNAYNIFSNMVSRDL-------VSWNSMVMGFSHH 411 (600)
Q Consensus 345 ~~~~~~a~~~~~~~~~~~~~~~-~~~~-----~~l~~~~~~~~~~~~A~~~~~~~~~~~~-------~~~~~l~~~~~~~ 411 (600)
.|+.+.|...+........... ...+ ...+..+...|+.+.|...+.....+.. ..+..+..++...
T Consensus 625 ~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 704 (903)
T PRK04841 625 RGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILL 704 (903)
T ss_pred cCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHc
Confidence 6666666666655433211100 0000 0112333445666666666655442210 0123344555666
Q ss_pred CChHHHHHHHHHHHHc----CCCCCh-hHHHHHHHHhcccCchHHHHHHHHHHHhh
Q 007519 412 GLANETLKVFESMLES----GTHPNS-VTFLGILSACSHAGLVSRGWELFNAMFDV 462 (600)
Q Consensus 412 ~~~~~a~~~~~~m~~~----~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 462 (600)
|++++|...+++.... |..++. .+...+..++...|+.++|.+.+.++.+.
T Consensus 705 g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 705 GQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred CCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 6666666666665442 211111 23334445556666666666666666553
No 113
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.53 E-value=7.4e-06 Score=70.88 Aligned_cols=116 Identities=14% Similarity=0.035 Sum_probs=52.4
Q ss_pred HHHHhcccCchHHHHHHHHHHHhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHhhhhC
Q 007519 439 ILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLP-FEP-DHRIWGALLGACGFCEG 516 (600)
Q Consensus 439 l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~g 516 (600)
.+....+.|++..|...++++.. .-.+|...|+.++-+|.+.|++++|..-|.+.. +.| ++...+++...+. -.|
T Consensus 106 ~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~-L~g 182 (257)
T COG5010 106 QGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLL-LRG 182 (257)
T ss_pred HHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHH-HcC
Confidence 33444444455555444444443 112244444444445555555555444443332 222 2333444444444 445
Q ss_pred CHHHHHHHHHHHHhhCCCCCCcHHHHhHHHHhhCCcHHHHH
Q 007519 517 NAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHK 557 (600)
Q Consensus 517 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 557 (600)
|.+.|..++..+....+.+..+-..|..+....|++++|..
T Consensus 183 d~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~ 223 (257)
T COG5010 183 DLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAED 223 (257)
T ss_pred CHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHh
Confidence 55555555544444444444444444444445555555444
No 114
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.52 E-value=4.6e-06 Score=82.05 Aligned_cols=213 Identities=13% Similarity=-0.007 Sum_probs=164.0
Q ss_pred HHHHHHHhcccchhhhHHHHHHHhhhcCCCchhHHHHHHHHHHhcCChHHHHHHHhcCC--CCChhhHHHHHHHHHhcCC
Q 007519 336 SVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMV--SRDLVSWNSMVMGFSHHGL 413 (600)
Q Consensus 336 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~ 413 (600)
..+...+.+.|-...|..++++. ..+...+.+|...|+..+|..+..+.. +|+...|..+........-
T Consensus 402 ~~laell~slGitksAl~I~Erl---------emw~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv~~d~s~ 472 (777)
T KOG1128|consen 402 RLLAELLLSLGITKSALVIFERL---------EMWDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDVLHDPSL 472 (777)
T ss_pred HHHHHHHHHcchHHHHHHHHHhH---------HHHHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhhccChHH
Confidence 34445666777777777777743 334567788888888888888776554 6777888888888777777
Q ss_pred hHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCC-CcchHHHHHHHHhhcCChHHHHHHH
Q 007519 414 ANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQP-GPEHYVSMINLLGRAGKIKEAEEFV 492 (600)
Q Consensus 414 ~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~ 492 (600)
+++|.++.+..... .-..+.....+.++++++.+.|+.-.+ +.| ...+|..++-+..+.++++.|.+.|
T Consensus 473 yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~---~nplq~~~wf~~G~~ALqlek~q~av~aF 542 (777)
T KOG1128|consen 473 YEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLE---INPLQLGTWFGLGCAALQLEKEQAAVKAF 542 (777)
T ss_pred HHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhh---cCccchhHHHhccHHHHHHhhhHHHHHHH
Confidence 88888888765432 111122223347889999999988765 355 5778999999999999999999999
Q ss_pred HhCC-CCCCH-HHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCCCcHHHHhHHHHhhCCcHHHHHHHHHHhhcCCc
Q 007519 493 LRLP-FEPDH-RIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVR 568 (600)
Q Consensus 493 ~~~~-~~p~~-~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 568 (600)
.... ..|+. ..|+++..++. +.|+..+|...++++++-+-++..++.+..-+..+.|.+++|.+.+..+.+....
T Consensus 543 ~rcvtL~Pd~~eaWnNls~ayi-~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~~ 619 (777)
T KOG1128|consen 543 HRCVTLEPDNAEAWNNLSTAYI-RLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKK 619 (777)
T ss_pred HHHhhcCCCchhhhhhhhHHHH-HHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhhh
Confidence 8865 67764 68999999999 9999999999999999988888899999988999999999999977777655443
No 115
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.50 E-value=7.3e-06 Score=84.64 Aligned_cols=131 Identities=13% Similarity=0.116 Sum_probs=70.0
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh-hHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCC-CcchHHH
Q 007519 397 DLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNS-VTFLGILSACSHAGLVSRGWELFNAMFDVYKIQP-GPEHYVS 474 (600)
Q Consensus 397 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~ 474 (600)
++..+-.|.....+.|++++|..+++...+ +.|+. .....+...+.+.+.+++|...++++... .| +......
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~---~p~~~~~~~~ 159 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG---GSSSAREILL 159 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc---CCCCHHHHHH
Confidence 345555555555556666666666665554 24443 33334445555556666666555555532 44 3445555
Q ss_pred HHHHHhhcCChHHHHHHHHhCC-CCCC-HHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCC
Q 007519 475 MINLLGRAGKIKEAEEFVLRLP-FEPD-HRIWGALLGACGFCEGNAEIAEHAAKRLLELDP 533 (600)
Q Consensus 475 l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p 533 (600)
++.++.+.|++++|..+|+++. ..|+ ..++..+...+. ..|+.++|...|+++++...
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~-~~G~~~~A~~~~~~a~~~~~ 219 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLT-RRGALWRARDVLQAGLDAIG 219 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhhC
Confidence 5555566666666666665543 2332 344555555555 55666666666666655443
No 116
>PLN02789 farnesyltranstransferase
Probab=98.48 E-value=4.1e-05 Score=71.71 Aligned_cols=224 Identities=11% Similarity=0.082 Sum_probs=136.6
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhcccchhhhHHHHHHHhhhcCCCchhHHHHHHHHHH
Q 007519 299 AWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYA 378 (600)
Q Consensus 299 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 378 (600)
++..+-..+...+..++|+.+..++++. .|+..|. ++....++.
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~l--nP~~yta----------------------------------W~~R~~iL~ 82 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRL--NPGNYTV----------------------------------WHFRRLCLE 82 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHH--CchhHHH----------------------------------HHHHHHHHH
Confidence 3444444556667777777777777764 4444321 111122222
Q ss_pred hcC-ChHHHHHHHhcCC---CCChhhHHHHHHHHHhcCCh--HHHHHHHHHHHHcCCCCChhHHHHHHHHhcccCchHHH
Q 007519 379 KCG-VIDNAYNIFSNMV---SRDLVSWNSMVMGFSHHGLA--NETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRG 452 (600)
Q Consensus 379 ~~~-~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~--~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a 452 (600)
..| ++++++..++++. +.+..+|+.-...+.+.|+. ++++.+++++.+.. +-|...|..-..++...|+++++
T Consensus 83 ~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~ee 161 (320)
T PLN02789 83 ALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDE 161 (320)
T ss_pred HcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHH
Confidence 233 3566666666554 34445566555555555542 56677777777642 33456666666667777778888
Q ss_pred HHHHHHHHhhcCCCC-CcchHHHHHHHHhhc---CCh----HHHHHHHHh-CCCCC-CHHHHHHHHHHHhhhh----CCH
Q 007519 453 WELFNAMFDVYKIQP-GPEHYVSMINLLGRA---GKI----KEAEEFVLR-LPFEP-DHRIWGALLGACGFCE----GNA 518 (600)
Q Consensus 453 ~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~---g~~----~~A~~~~~~-~~~~p-~~~~~~~l~~~~~~~~----g~~ 518 (600)
++.+.++++. .| +...|+....++.+. |.. +++.++..+ +...| +...|+.+.+.+. .. +..
T Consensus 162 L~~~~~~I~~---d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~-~~~~~l~~~ 237 (320)
T PLN02789 162 LEYCHQLLEE---DVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFK-DDKEALVSD 237 (320)
T ss_pred HHHHHHHHHH---CCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHh-cCCcccccc
Confidence 8888887754 44 466676666665544 222 355666644 34555 4567777777766 52 345
Q ss_pred HHHHHHHHHHHhhCCCCCCcHHHHhHHHHhhC------------------CcHHHHHHHHHHh
Q 007519 519 EIAEHAAKRLLELDPLNAPAHVVLCNIYAASG------------------RHVEEHKLRMDMG 563 (600)
Q Consensus 519 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g------------------~~~~A~~~~~~~~ 563 (600)
.+|...+.+++..+|.++.++..|+.+|.... ..++|.++++.+.
T Consensus 238 ~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~ 300 (320)
T PLN02789 238 PEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELE 300 (320)
T ss_pred hhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHHH
Confidence 66888888888888888888888888887632 2366777777774
No 117
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.47 E-value=1.1e-05 Score=84.83 Aligned_cols=199 Identities=17% Similarity=0.114 Sum_probs=138.2
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHhcCCC--------CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHH
Q 007519 366 DLILENCLISMYAKCGVIDNAYNIFSNMVS--------RDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFL 437 (600)
Q Consensus 366 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--------~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~ 437 (600)
+...|-..|......++.++|+++.++..+ .-...|.++++.....|.-+...++|+++.+. --....|.
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V~~ 1534 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTVHL 1534 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHHHH
Confidence 455666677777777788888777777651 12356777777777777777778888877763 22234566
Q ss_pred HHHHHhcccCchHHHHHHHHHHHhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhCC-CCCC--H-HHHHHHHHHHhh
Q 007519 438 GILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLP-FEPD--H-RIWGALLGACGF 513 (600)
Q Consensus 438 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~--~-~~~~~l~~~~~~ 513 (600)
.|...|.+.+.+++|.++++.|.++++ ....+|..++..+.+..+-+.|.+++.++. .-|. . ......+..-.
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEF- 1611 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEF- 1611 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHh-
Confidence 777778888888888888888887655 456678888888888888788888877653 3333 1 22222222233
Q ss_pred hhCCHHHHHHHHHHHHhhCCCCCCcHHHHhHHHHhhCCcHHHHHHHHHHhhcCCcc
Q 007519 514 CEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRK 569 (600)
Q Consensus 514 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 569 (600)
+.||.+.+..+|+-.+.-.|.....|..+++.-.++|+.+.++.+++.+...++++
T Consensus 1612 k~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1612 KYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred hcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence 77888888888888888888777888888888888888888888777776666543
No 118
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.46 E-value=1.4e-05 Score=69.60 Aligned_cols=154 Identities=10% Similarity=0.117 Sum_probs=110.5
Q ss_pred HHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccCchHHHH
Q 007519 374 ISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGW 453 (600)
Q Consensus 374 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~ 453 (600)
+-.|...|+++.+....+.+..+. ..+...++.+++...+++..... +.+...|..+...|...|+++.|.
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~ 93 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNAL 93 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 345677777777655443332221 01223566778888888877653 556677888888999999999999
Q ss_pred HHHHHHHhhcCCCC-CcchHHHHHHHH-hhcCC--hHHHHHHHHhCC-CCCC-HHHHHHHHHHHhhhhCCHHHHHHHHHH
Q 007519 454 ELFNAMFDVYKIQP-GPEHYVSMINLL-GRAGK--IKEAEEFVLRLP-FEPD-HRIWGALLGACGFCEGNAEIAEHAAKR 527 (600)
Q Consensus 454 ~~~~~~~~~~~~~p-~~~~~~~l~~~~-~~~g~--~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~~g~~~~a~~~~~~ 527 (600)
..|+++.+. .| +...+..++.++ ...|+ .++|.+++++.. ..|+ ...+..+...+. ..|++++|+..+++
T Consensus 94 ~a~~~Al~l---~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~-~~g~~~~Ai~~~~~ 169 (198)
T PRK10370 94 LAYRQALQL---RGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAF-MQADYAQAIELWQK 169 (198)
T ss_pred HHHHHHHHh---CCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHH-HcCCHHHHHHHHHH
Confidence 999988854 56 577888888864 67777 599999998875 5664 456666666677 99999999999999
Q ss_pred HHhhCCCCCCcHH
Q 007519 528 LLELDPLNAPAHV 540 (600)
Q Consensus 528 ~~~~~p~~~~~~~ 540 (600)
++++.|.+..-+.
T Consensus 170 aL~l~~~~~~r~~ 182 (198)
T PRK10370 170 VLDLNSPRVNRTQ 182 (198)
T ss_pred HHhhCCCCccHHH
Confidence 9998886654443
No 119
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.45 E-value=6.6e-05 Score=74.26 Aligned_cols=216 Identities=11% Similarity=0.090 Sum_probs=171.4
Q ss_pred CCCchhHHHHHHHHHhcCChHHHHHHHhhCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHH
Q 007519 263 VRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAA 342 (600)
Q Consensus 263 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~ 342 (600)
+|-...-..+...+.+.|-...|..+|+++. .|..+|.+|+..|+..+|..+..+..+. +||..-|..+....
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erle-----mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~ 467 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERLE-----MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVL 467 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhHH-----HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhc
Confidence 3344455678888999999999999998754 6888899999999999999998888773 78888888888888
Q ss_pred hcccchhhhHHHHHHHhhhcCCCchhHHHHHHHHHHhcCChHHHHHHHhcCC---CCChhhHHHHHHHHHhcCChHHHHH
Q 007519 343 GATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMV---SRDLVSWNSMVMGFSHHGLANETLK 419 (600)
Q Consensus 343 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~ 419 (600)
....-+++|.++.+..... .-..+.....+.++++++.+.|+.-. +-...+|-....+..+.++++.|.+
T Consensus 468 ~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~ 540 (777)
T KOG1128|consen 468 HDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVK 540 (777)
T ss_pred cChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHH
Confidence 7777788888887743322 11122223345789999999998755 4456788888888899999999999
Q ss_pred HHHHHHHcCCCCC-hhHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhCC
Q 007519 420 VFESMLESGTHPN-SVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLP 496 (600)
Q Consensus 420 ~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 496 (600)
.|..-.. ..|+ ...|+.+-.+|.+.|+-.+|...++++.+- . .-+..+|...+-...+.|.+++|.+.+.++.
T Consensus 541 aF~rcvt--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKc-n-~~~w~iWENymlvsvdvge~eda~~A~~rll 614 (777)
T KOG1128|consen 541 AFHRCVT--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKC-N-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLL 614 (777)
T ss_pred HHHHHhh--cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhc-C-CCCCeeeechhhhhhhcccHHHHHHHHHHHH
Confidence 9998886 3565 478999999999999999999999999874 3 3355678888888899999999999998864
No 120
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.44 E-value=5.8e-06 Score=66.55 Aligned_cols=96 Identities=14% Similarity=0.015 Sum_probs=82.0
Q ss_pred CcchHHHHHHHHhhcCChHHHHHHHHhCC-CCCC-HHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCCCcHHHHhHH
Q 007519 468 GPEHYVSMINLLGRAGKIKEAEEFVLRLP-FEPD-HRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNI 545 (600)
Q Consensus 468 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 545 (600)
+......++..+...|++++|.++|+-+. ..|. ..-|..+..++. ..|++++|+..|.++..++|++|.++.+++.+
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q-~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c 112 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQ-AQKHWGEAIYAYGRAAQIKIDAPQAPWAAAEC 112 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH-HHhhHHHHHHHHHHHHhcCCCCchHHHHHHHH
Confidence 35566677888899999999999999875 5665 455667777777 99999999999999999999999999999999
Q ss_pred HHhhCCcHHHHHHHHHHhh
Q 007519 546 YAASGRHVEEHKLRMDMGL 564 (600)
Q Consensus 546 ~~~~g~~~~A~~~~~~~~~ 564 (600)
+...|+.+.|.+-++....
T Consensus 113 ~L~lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 113 YLACDNVCYAIKALKAVVR 131 (157)
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 9999999999996665443
No 121
>PLN02789 farnesyltranstransferase
Probab=98.43 E-value=3e-05 Score=72.64 Aligned_cols=191 Identities=12% Similarity=0.131 Sum_probs=139.9
Q ss_pred HHHHHHHhcCChHHHHHHHhcCC---CCChhhHHHHHHHHHhcC-ChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccC
Q 007519 372 CLISMYAKCGVIDNAYNIFSNMV---SRDLVSWNSMVMGFSHHG-LANETLKVFESMLESGTHPNSVTFLGILSACSHAG 447 (600)
Q Consensus 372 ~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g 447 (600)
.+-..+...++.++|+....++. +.+..+|+.-..++...| ++++++..++++.+.. +-+..+|..-...+.+.|
T Consensus 42 ~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~ 120 (320)
T PLN02789 42 YFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLG 120 (320)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcC
Confidence 34444556778889999988877 445567777666777777 6799999999998753 334455655444444555
Q ss_pred c--hHHHHHHHHHHHhhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHhhhh---CC--
Q 007519 448 L--VSRGWELFNAMFDVYKIQP-GPEHYVSMINLLGRAGKIKEAEEFVLRLP-FEP-DHRIWGALLGACGFCE---GN-- 517 (600)
Q Consensus 448 ~--~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~---g~-- 517 (600)
. .+++..+++++.+. .| +..+|+....++...|++++|++.++++. ..| +...|+.....+. +. |+
T Consensus 121 ~~~~~~el~~~~kal~~---dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~-~~~~l~~~~ 196 (320)
T PLN02789 121 PDAANKELEFTRKILSL---DAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVIT-RSPLLGGLE 196 (320)
T ss_pred chhhHHHHHHHHHHHHh---CcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHH-hcccccccc
Confidence 5 36778888888753 66 68899999999999999999999999975 344 5677877766654 43 22
Q ss_pred --HHHHHHHHHHHHhhCCCCCCcHHHHhHHHHhh----CCcHHHHHHHHHHhhcCC
Q 007519 518 --AEIAEHAAKRLLELDPLNAPAHVVLCNIYAAS----GRHVEEHKLRMDMGLKGV 567 (600)
Q Consensus 518 --~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~~ 567 (600)
.+..+.+.++++..+|+|..++..+..++... ++..+|.++.......++
T Consensus 197 ~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~ 252 (320)
T PLN02789 197 AMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDS 252 (320)
T ss_pred ccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccC
Confidence 25688888999999999999999999999883 455678776666554433
No 122
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.43 E-value=2e-05 Score=68.26 Aligned_cols=150 Identities=16% Similarity=0.168 Sum_probs=102.5
Q ss_pred HHHHHHhcCChHHHHHHHhcCC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccCch
Q 007519 373 LISMYAKCGVIDNAYNIFSNMV---SRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLV 449 (600)
Q Consensus 373 l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~ 449 (600)
+-..+.-.|+-+....+..... +.|.......+....+.|++..|+..|++.... -++|...|+.+.-+|.+.|++
T Consensus 72 ~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l-~p~d~~~~~~lgaaldq~Gr~ 150 (257)
T COG5010 72 LATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL-APTDWEAWNLLGAALDQLGRF 150 (257)
T ss_pred HHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc-CCCChhhhhHHHHHHHHccCh
Confidence 3444455566555555555533 344555566777777788888888888877764 366667777777788888888
Q ss_pred HHHHHHHHHHHhhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHhCCC-CC-CHHHHHHHHHHHhhhhCCHHHHHHHHH
Q 007519 450 SRGWELFNAMFDVYKIQP-GPEHYVSMINLLGRAGKIKEAEEFVLRLPF-EP-DHRIWGALLGACGFCEGNAEIAEHAAK 526 (600)
Q Consensus 450 ~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~p-~~~~~~~l~~~~~~~~g~~~~a~~~~~ 526 (600)
+.|..-|.+..+. .| ++..++.|+..|.-.|+.+.|..++..... .+ |..+-..+..... ..|+++.|..+..
T Consensus 151 ~~Ar~ay~qAl~L---~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~-~~g~~~~A~~i~~ 226 (257)
T COG5010 151 DEARRAYRQALEL---APNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVG-LQGDFREAEDIAV 226 (257)
T ss_pred hHHHHHHHHHHHh---ccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHh-hcCChHHHHhhcc
Confidence 8888877777753 45 466777788788888888888888777652 22 5556666766666 7788877776665
Q ss_pred H
Q 007519 527 R 527 (600)
Q Consensus 527 ~ 527 (600)
+
T Consensus 227 ~ 227 (257)
T COG5010 227 Q 227 (257)
T ss_pred c
Confidence 4
No 123
>PF12854 PPR_1: PPR repeat
Probab=98.40 E-value=4.3e-07 Score=52.69 Aligned_cols=33 Identities=39% Similarity=0.731 Sum_probs=27.7
Q ss_pred CCCCChhhHHHHHHHHHhcCChhhHHHHhcccC
Q 007519 230 GNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVP 262 (600)
Q Consensus 230 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 262 (600)
|+.||..||+.+|++|++.|++++|.++|++|.
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 778888888888888888888888888888763
No 124
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.39 E-value=4.6e-05 Score=65.47 Aligned_cols=169 Identities=18% Similarity=0.176 Sum_probs=117.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHhcCC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhccc
Q 007519 370 ENCLISMYAKCGVIDNAYNIFSNMV---SRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHA 446 (600)
Q Consensus 370 ~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 446 (600)
|..++-+....|+.+-|...++.+. +.+..+-..-...+-..|++++|+++++.+.+.. +.|..++..=+...-..
T Consensus 55 ~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~ 133 (289)
T KOG3060|consen 55 YEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQ 133 (289)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHc
Confidence 3444455566677777777776654 2222222222334556788999999999988865 55566676666666667
Q ss_pred CchHHHHHHHHHHHhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhCC-CCCCHHHH-HHHHHHHhhhhC---CHHHH
Q 007519 447 GLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLP-FEPDHRIW-GALLGACGFCEG---NAEIA 521 (600)
Q Consensus 447 g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~-~~l~~~~~~~~g---~~~~a 521 (600)
|+.-+|++-+....+. +..|...|.-+.+.|...|++++|.-.++++. ..|-.+.+ ..+...+. ..| +.+.+
T Consensus 134 GK~l~aIk~ln~YL~~--F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Y-t~gg~eN~~~a 210 (289)
T KOG3060|consen 134 GKNLEAIKELNEYLDK--FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLY-TQGGAENLELA 210 (289)
T ss_pred CCcHHHHHHHHHHHHH--hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH-HHhhHHHHHHH
Confidence 7777888888888874 55688899999999999999999999999975 66755544 44444444 444 56778
Q ss_pred HHHHHHHHhhCCCCCCcHHHH
Q 007519 522 EHAAKRLLELDPLNAPAHVVL 542 (600)
Q Consensus 522 ~~~~~~~~~~~p~~~~~~~~l 542 (600)
.++|.+++++.|.+...+..+
T Consensus 211 rkyy~~alkl~~~~~ral~GI 231 (289)
T KOG3060|consen 211 RKYYERALKLNPKNLRALFGI 231 (289)
T ss_pred HHHHHHHHHhChHhHHHHHHH
Confidence 899999999999665554443
No 125
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.36 E-value=6.4e-05 Score=78.62 Aligned_cols=147 Identities=10% Similarity=0.080 Sum_probs=94.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhcCC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcc
Q 007519 369 LENCLISMYAKCGVIDNAYNIFSNMV---SRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSH 445 (600)
Q Consensus 369 ~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 445 (600)
.+..+..+|-+.|+.++|..+|+++. +.|+.+.|.+...|+.. +.++|++++.+.... +..
T Consensus 118 Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~---------------~i~ 181 (906)
T PRK14720 118 ALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR---------------FIK 181 (906)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH---------------HHh
Confidence 44566777777777777777777765 45666777777777777 777777777766543 444
Q ss_pred cCchHHHHHHHHHHHhhcCCCCC-cchHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHhhhhCCHHHHHHH
Q 007519 446 AGLVSRGWELFNAMFDVYKIQPG-PEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHA 524 (600)
Q Consensus 446 ~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~g~~~~a~~~ 524 (600)
.+++..+.++|.++... .|+ ...+..+.+....+-.+. --..++.-+...|. ..+++++++.+
T Consensus 182 ~kq~~~~~e~W~k~~~~---~~~d~d~f~~i~~ki~~~~~~~------------~~~~~~~~l~~~y~-~~~~~~~~i~i 245 (906)
T PRK14720 182 KKQYVGIEEIWSKLVHY---NSDDFDFFLRIERKVLGHREFT------------RLVGLLEDLYEPYK-ALEDWDEVIYI 245 (906)
T ss_pred hhcchHHHHHHHHHHhc---CcccchHHHHHHHHHHhhhccc------------hhHHHHHHHHHHHh-hhhhhhHHHHH
Confidence 55677777777777642 443 323332322222221111 11223344445555 77889999999
Q ss_pred HHHHHhhCCCCCCcHHHHhHHHH
Q 007519 525 AKRLLELDPLNAPAHVVLCNIYA 547 (600)
Q Consensus 525 ~~~~~~~~p~~~~~~~~l~~~~~ 547 (600)
++.+++.+|.|..+...++..|.
T Consensus 246 LK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 246 LKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HHHHHhcCCcchhhHHHHHHHHH
Confidence 99999999988888888888776
No 126
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.35 E-value=6.7e-05 Score=70.91 Aligned_cols=110 Identities=25% Similarity=0.225 Sum_probs=60.8
Q ss_pred cccCchHHHHHHHHHHHhhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHhCC-CCCC-HHHHHHHHHHHhhhhCCHHH
Q 007519 444 SHAGLVSRGWELFNAMFDVYKIQP-GPEHYVSMINLLGRAGKIKEAEEFVLRLP-FEPD-HRIWGALLGACGFCEGNAEI 520 (600)
Q Consensus 444 ~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~~g~~~~ 520 (600)
...|.+++|+..++.+... .| |+..+...+..+.+.++.++|.+.++++. ..|+ ...+..+..++. +.|+..+
T Consensus 317 ~~~~~~d~A~~~l~~L~~~---~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all-~~g~~~e 392 (484)
T COG4783 317 YLAGQYDEALKLLQPLIAA---QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALL-KGGKPQE 392 (484)
T ss_pred HHhcccchHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHH-hcCChHH
Confidence 3445556666666555542 34 34444455555666666666666665543 4444 233444444555 5566666
Q ss_pred HHHHHHHHHhhCCCCCCcHHHHhHHHHhhCCcHHHHH
Q 007519 521 AEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHK 557 (600)
Q Consensus 521 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 557 (600)
|+..++.....+|+++..|..|+.+|...|+..++..
T Consensus 393 ai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~ 429 (484)
T COG4783 393 AIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALL 429 (484)
T ss_pred HHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHH
Confidence 6666666666666666666666666666555555555
No 127
>PF12854 PPR_1: PPR repeat
Probab=98.35 E-value=6.6e-07 Score=51.91 Aligned_cols=32 Identities=25% Similarity=0.396 Sum_probs=18.9
Q ss_pred CCCCCcchHHHHHHHHhhcCChHHHHHHHHhC
Q 007519 464 KIQPGPEHYVSMINLLGRAGKIKEAEEFVLRL 495 (600)
Q Consensus 464 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 495 (600)
|+.||..+|++|+.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 45555556666666666666666666665555
No 128
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.34 E-value=4.5e-05 Score=69.32 Aligned_cols=182 Identities=14% Similarity=0.015 Sum_probs=122.3
Q ss_pred CChhHHHHHHHHHhcccchhhhHHHHHHHhhhcCCC--chhHHHHHHHHHHhcCChHHHHHHHhcCC--CC-Chh---hH
Q 007519 330 PLNATFSVLFGAAGATANIDLGRQIHCVLMKTESES--DLILENCLISMYAKCGVIDNAYNIFSNMV--SR-DLV---SW 401 (600)
Q Consensus 330 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~-~~~---~~ 401 (600)
.....+..+...+...|+++.|...++.+.+..... ....+..+..++...|++++|...++++. .| +.. .+
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 345567777778899999999999999887765432 12456778899999999999999999986 22 222 45
Q ss_pred HHHHHHHHhc--------CChHHHHHHHHHHHHcCCCCChh-HHHHHHHHhcccCchHHHHHHHHHHHhhcCCCCCcchH
Q 007519 402 NSMVMGFSHH--------GLANETLKVFESMLESGTHPNSV-TFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHY 472 (600)
Q Consensus 402 ~~l~~~~~~~--------~~~~~a~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~ 472 (600)
..+..++... |+.++|.+.|+.+... .|+.. ....+.... .. ..... ...
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~----~~------~~~~~---------~~~ 169 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMD----YL------RNRLA---------GKE 169 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHH----HH------HHHHH---------HHH
Confidence 5555666554 7889999999999875 45542 222111110 00 00000 012
Q ss_pred HHHHHHHhhcCChHHHHHHHHhCC-C---CC-CHHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCC
Q 007519 473 VSMINLLGRAGKIKEAEEFVLRLP-F---EP-DHRIWGALLGACGFCEGNAEIAEHAAKRLLELDP 533 (600)
Q Consensus 473 ~~l~~~~~~~g~~~~A~~~~~~~~-~---~p-~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p 533 (600)
..++..|.+.|++++|...+++.. . .| ....+..+..++. ..|+.++|...++.+....|
T Consensus 170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~-~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 170 LYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYL-KLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhhCC
Confidence 356677888888888888887753 2 23 2456777777777 88888888888887766555
No 129
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.30 E-value=0.00037 Score=60.56 Aligned_cols=156 Identities=17% Similarity=0.126 Sum_probs=95.2
Q ss_pred HHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhc----ccCc
Q 007519 373 LISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACS----HAGL 448 (600)
Q Consensus 373 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~----~~g~ 448 (600)
-...|...|++++|++..... .+......=...+.+..+.+-|.+.+++|.+- -+..|.+.|..++. ..+.
T Consensus 114 aa~i~~~~~~~deAl~~~~~~--~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~ggek 188 (299)
T KOG3081|consen 114 AAIIYMHDGDFDEALKALHLG--ENLEAAALNVQILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATGGEK 188 (299)
T ss_pred hhHHhhcCCChHHHHHHHhcc--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhccchh
Confidence 334566777777777777662 23333333344556666777777777777652 24455555555543 3456
Q ss_pred hHHHHHHHHHHHhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHhhhhC-CHHHHHHHH
Q 007519 449 VSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLP--FEPDHRIWGALLGACGFCEG-NAEIAEHAA 525 (600)
Q Consensus 449 ~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~g-~~~~a~~~~ 525 (600)
+..|.-+|+++.+ +..|++.+.+..+.++...|++++|..++++.. ..-++.++.+++.... ..| +.+-..+..
T Consensus 189 ~qdAfyifeE~s~--k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~-~~Gkd~~~~~r~l 265 (299)
T KOG3081|consen 189 IQDAFYIFEELSE--KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLAL-HLGKDAEVTERNL 265 (299)
T ss_pred hhhHHHHHHHHhc--ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHH-HhCCChHHHHHHH
Confidence 7777777777765 356777777777777777777777777777754 2234555555555444 444 344455667
Q ss_pred HHHHhhCCCCC
Q 007519 526 KRLLELDPLNA 536 (600)
Q Consensus 526 ~~~~~~~p~~~ 536 (600)
.++....|.++
T Consensus 266 ~QLk~~~p~h~ 276 (299)
T KOG3081|consen 266 SQLKLSHPEHP 276 (299)
T ss_pred HHHHhcCCcch
Confidence 77777777433
No 130
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.29 E-value=7.9e-06 Score=66.85 Aligned_cols=91 Identities=15% Similarity=0.138 Sum_probs=42.0
Q ss_pred HHHHhcccCchHHHHHHHHHHHhhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHhCC-CCCC-HHHHHHHHHHHhhhh
Q 007519 439 ILSACSHAGLVSRGWELFNAMFDVYKIQP-GPEHYVSMINLLGRAGKIKEAEEFVLRLP-FEPD-HRIWGALLGACGFCE 515 (600)
Q Consensus 439 l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~~ 515 (600)
+...+...|++++|.+.++.+... .| +...+..++..+...|++++|...+++.. ..|+ ...+..+...+. ..
T Consensus 23 ~a~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~-~~ 98 (135)
T TIGR02552 23 LAYNLYQQGRYDEALKLFQLLAAY---DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLL-AL 98 (135)
T ss_pred HHHHHHHcccHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH-Hc
Confidence 334444555555555555554432 22 34444455555555555555555554432 2222 233333333333 45
Q ss_pred CCHHHHHHHHHHHHhhCC
Q 007519 516 GNAEIAEHAAKRLLELDP 533 (600)
Q Consensus 516 g~~~~a~~~~~~~~~~~p 533 (600)
|+.++|+..+++++++.|
T Consensus 99 g~~~~A~~~~~~al~~~p 116 (135)
T TIGR02552 99 GEPESALKALDLAIEICG 116 (135)
T ss_pred CCHHHHHHHHHHHHHhcc
Confidence 555555555555555555
No 131
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.25 E-value=0.00035 Score=60.70 Aligned_cols=115 Identities=14% Similarity=0.126 Sum_probs=54.1
Q ss_pred HHHHhcCChhhHHHHhcccCCCCchhHHHHHHHHHhcCChHHHHHHHhhCCC-CChhhHHHHHHHHHh----CCChhHHH
Q 007519 243 NGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPD-RDAVAWTAMISGLVQ----NELFVEAT 317 (600)
Q Consensus 243 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~a~ 317 (600)
..|+..+++++|++..+.. .+......=+..+.+..+++-|.+.++.|.+ .+..+.+.|..++.+ .+...+|.
T Consensus 116 ~i~~~~~~~deAl~~~~~~--~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~tLtQLA~awv~la~ggek~qdAf 193 (299)
T KOG3081|consen 116 IIYMHDGDFDEALKALHLG--ENLEAAALNVQILLKMHRFDLAEKELKKMQQIDEDATLTQLAQAWVKLATGGEKIQDAF 193 (299)
T ss_pred HHhhcCCChHHHHHHHhcc--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhccchhhhhHH
Confidence 3455666666666665552 2222223333444555555555555555554 222333334333322 33455555
Q ss_pred HHHHHHHHCCCCCChhHHHHHHHHHhcccchhhhHHHHHHHhh
Q 007519 318 YLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMK 360 (600)
Q Consensus 318 ~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 360 (600)
-+|++|-+. ..|+..+.+-...++...+++++|..+++.+..
T Consensus 194 yifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~ 235 (299)
T KOG3081|consen 194 YIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALD 235 (299)
T ss_pred HHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHh
Confidence 555555443 344444444444444444444444444444433
No 132
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.23 E-value=0.00013 Score=62.85 Aligned_cols=159 Identities=17% Similarity=0.181 Sum_probs=125.4
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHH-HHHhcccCchHHHHHHHHHHHhhcCCCC-CcchHHHHHH
Q 007519 400 SWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGI-LSACSHAGLVSRGWELFNAMFDVYKIQP-GPEHYVSMIN 477 (600)
Q Consensus 400 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l-~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~ 477 (600)
.|..++-+....|+.+-|..+++.+... + |.+.-...+ ...+...|.+++|.++++.+.+. +| |..++---+-
T Consensus 54 l~EqV~IAAld~~~~~lAq~C~~~L~~~-f-p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~d---dpt~~v~~KRKlA 128 (289)
T KOG3060|consen 54 LYEQVFIAALDTGRDDLAQKCINQLRDR-F-PGSKRVGKLKAMLLEATGNYKEAIEYYESLLED---DPTDTVIRKRKLA 128 (289)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHh-C-CCChhHHHHHHHHHHHhhchhhHHHHHHHHhcc---CcchhHHHHHHHH
Confidence 4566677778899999999999999886 4 554333222 23455679999999999999975 46 6777777777
Q ss_pred HHhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCCCcHHHHhHHHHhhCC---c
Q 007519 478 LLGRAGKIKEAEEFVLRLP--FEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGR---H 552 (600)
Q Consensus 478 ~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~---~ 552 (600)
+.-..|+.-+|++-+.+.. +..|...|..+...|. ..|++++|...+++++=..|-++..+..++.++.-.|- .
T Consensus 129 ilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~-~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~ 207 (289)
T KOG3060|consen 129 ILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYL-SEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENL 207 (289)
T ss_pred HHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHH-hHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHH
Confidence 7778888889988887764 6678999999999999 99999999999999999999999999999999887764 4
Q ss_pred HHHHHHHHHHhh
Q 007519 553 VEEHKLRMDMGL 564 (600)
Q Consensus 553 ~~A~~~~~~~~~ 564 (600)
+-|.+++....+
T Consensus 208 ~~arkyy~~alk 219 (289)
T KOG3060|consen 208 ELARKYYERALK 219 (289)
T ss_pred HHHHHHHHHHHH
Confidence 445555544433
No 133
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.18 E-value=5.1e-05 Score=72.49 Aligned_cols=125 Identities=12% Similarity=0.097 Sum_probs=104.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccCc
Q 007519 369 LENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGL 448 (600)
Q Consensus 369 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~ 448 (600)
....|+..+...++++.|..+|+++...++.....++..+...++-.+|++++++.... .+-+...+..-...|...++
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~-~p~d~~LL~~Qa~fLl~k~~ 249 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKE-NPQDSELLNLQAEFLLSKKK 249 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCC
Confidence 34566777778899999999999999777777778889998899999999999999864 23344555555677889999
Q ss_pred hHHHHHHHHHHHhhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHhCCC
Q 007519 449 VSRGWELFNAMFDVYKIQP-GPEHYVSMINLLGRAGKIKEAEEFVLRLPF 497 (600)
Q Consensus 449 ~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 497 (600)
.+.|..+.+++.+ ..| +..+|..|+.+|...|+++.|+-.++.+|.
T Consensus 250 ~~lAL~iAk~av~---lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 250 YELALEIAKKAVE---LSPSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred HHHHHHHHHHHHH---hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 9999999999985 478 577999999999999999999999999873
No 134
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.17 E-value=0.00015 Score=75.22 Aligned_cols=143 Identities=12% Similarity=0.080 Sum_probs=107.4
Q ss_pred cCCCchhHHHHHHHHHHhcCChHHHHHHHhcCC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChh-HHH
Q 007519 362 ESESDLILENCLISMYAKCGVIDNAYNIFSNMV---SRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSV-TFL 437 (600)
Q Consensus 362 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~ 437 (600)
.+..++..+..|.......|++++|+.+++.+. +.+...+..++..+.+.+++++|+..+++.... .|+.. ...
T Consensus 81 ~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~~~~~ 158 (694)
T PRK15179 81 RYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSSSAREIL 158 (694)
T ss_pred hccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCCCHHHHH
Confidence 344567777788888888899999988888876 445667777888888889999999888888874 55554 445
Q ss_pred HHHHHhcccCchHHHHHHHHHHHhhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHhCC--CCCCHHHHHHHHH
Q 007519 438 GILSACSHAGLVSRGWELFNAMFDVYKIQP-GPEHYVSMINLLGRAGKIKEAEEFVLRLP--FEPDHRIWGALLG 509 (600)
Q Consensus 438 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~ 509 (600)
.+..++.+.|++++|..+|+++... .| +..++..++.++...|+.++|...|++.. ..|....|+..+.
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~~~---~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 230 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLSRQ---HPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRLV 230 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhc---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHHH
Confidence 5557778888999999999888852 44 36788888888888899999988888864 4455555554443
No 135
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=98.15 E-value=0.0061 Score=57.43 Aligned_cols=410 Identities=10% Similarity=0.056 Sum_probs=212.5
Q ss_pred HHhcCCHhHHHHHHHhccc---CCc------hhHHHHHHHHHhcCChhHHHHHHccCCC-CCcchHHHHHHHH--HhcCC
Q 007519 145 YVECCMMGEAIVLFEEMEE---RNV------VTWTSMISGYCRAGEVEEGYCLFRRMPR-KNVVSWTAMIGGF--AWNGF 212 (600)
Q Consensus 145 ~~~~~~~~~A~~~~~~~~~---~~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~--~~~~~ 212 (600)
+-+.++..+|.++|.++-+ .++ ..-+.++++|.. ++++.....+....+ .....|..+..++ .+.+.
T Consensus 16 Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~~~~s~~l~LF~~L~~Y~~k~ 94 (549)
T PF07079_consen 16 LQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQFGKSAYLPLFKALVAYKQKE 94 (549)
T ss_pred HHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhh
Confidence 3467889999999988763 222 223456666655 455655555555543 2245666666654 46788
Q ss_pred hhHHHHHHHHHHhhhcCCCCC-----------ChhhHHHHHHHHHhcCChhhHHHHhcccC--------CCCchhHHHHH
Q 007519 213 HKESLLLFIEMKGICDNGNNC-----------NVQSCNSMINGYIRFGRLEEAQNLFDTVP--------VRDEISWTSMI 273 (600)
Q Consensus 213 ~~~a~~~~~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--------~~~~~~~~~l~ 273 (600)
+.+|++.+....+..+....| |-..=+..+.++...|++.++..+++++. ..+..+|+.++
T Consensus 95 ~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~v 174 (549)
T PF07079_consen 95 YRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAV 174 (549)
T ss_pred HHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHH
Confidence 999999888877641111111 11112345667778899999988888776 24666777755
Q ss_pred HHHHhcCChH---------------HHHHHHhhCCCCCh----------hhHHHHHHHHHhC--CChhHHHHHHHHHHHC
Q 007519 274 DGYLSVGQVS---------------NAYYLFHNMPDRDA----------VAWTAMISGLVQN--ELFVEATYLFMEMRAH 326 (600)
Q Consensus 274 ~~~~~~~~~~---------------~A~~~~~~~~~~~~----------~~~~~li~~~~~~--g~~~~a~~~~~~m~~~ 326 (600)
-++++.=-.+ -+.-...++...+. .....++....-. .+..--+++++.....
T Consensus 175 lmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~~ 254 (549)
T PF07079_consen 175 LMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWENF 254 (549)
T ss_pred HHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHhh
Confidence 5544321111 11111111111111 1111111111111 1112223333333333
Q ss_pred CCCCChh-HHHHHHHHHhcccchhhhHHHHHHHhhhcCCC----chhHHHHHHHHHHhcCChHHHHHHHhcCC--CCChh
Q 007519 327 GVPPLNA-TFSVLFGAAGATANIDLGRQIHCVLMKTESES----DLILENCLISMYAKCGVIDNAYNIFSNMV--SRDLV 399 (600)
Q Consensus 327 g~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~ 399 (600)
-+.|+.. ....+...+.+ +.+.+..+-+.+....+.+ -...+..++....+.++...|.+.+.-+. .|+..
T Consensus 255 yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ldp~~s 332 (549)
T PF07079_consen 255 YVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKILDPRIS 332 (549)
T ss_pred ccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCcch
Confidence 3445433 22233333333 3444444333332222111 23345556666666777777766666554 33332
Q ss_pred hHHH-------HHHHHHh----cCChHHHHHHHHHHHHcCCCCChhHHHHHH---HHhcccCc-hHHHHHHHHHHHhhcC
Q 007519 400 SWNS-------MVMGFSH----HGLANETLKVFESMLESGTHPNSVTFLGIL---SACSHAGL-VSRGWELFNAMFDVYK 464 (600)
Q Consensus 400 ~~~~-------l~~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~---~~~~~~g~-~~~a~~~~~~~~~~~~ 464 (600)
.-.. +-...+. .-+..+=+.+|+......+.-. .....++ .-+.+.|. -++|.++++.+.+
T Consensus 333 vs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrq-QLvh~L~~~Ak~lW~~g~~dekalnLLk~il~--- 408 (549)
T PF07079_consen 333 VSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQ-QLVHYLVFGAKHLWEIGQCDEKALNLLKLILQ--- 408 (549)
T ss_pred hhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHH-HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH---
Confidence 1111 1122221 1122233444555544322211 1112222 23444554 7888999988874
Q ss_pred CCC-CcchHHHHH----HHHhh---cCChHH---HHHHHHhCCCCC----CHHHHHHHHHH-HhhhhCCHHHHHHHHHHH
Q 007519 465 IQP-GPEHYVSMI----NLLGR---AGKIKE---AEEFVLRLPFEP----DHRIWGALLGA-CGFCEGNAEIAEHAAKRL 528 (600)
Q Consensus 465 ~~p-~~~~~~~l~----~~~~~---~g~~~~---A~~~~~~~~~~p----~~~~~~~l~~~-~~~~~g~~~~a~~~~~~~ 528 (600)
+.| |..+-|.+. .+|.. ...+.+ -+.++++.++.| +...-|.+..+ |.+.+|++.++.-...-+
T Consensus 409 ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL 488 (549)
T PF07079_consen 409 FTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWL 488 (549)
T ss_pred hccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 345 443333322 12211 111222 223344444443 34455666655 445899999999999999
Q ss_pred HhhCCCCCCcHHHHhHHHHhhCCcHHHHHHHHHH
Q 007519 529 LELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDM 562 (600)
Q Consensus 529 ~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 562 (600)
.++.| ++.+|..+|-.+....++++|++++..+
T Consensus 489 ~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 489 TKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 99999 9999999999999999999999988754
No 136
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.13 E-value=4.2e-05 Score=73.04 Aligned_cols=122 Identities=16% Similarity=0.081 Sum_probs=96.8
Q ss_pred HHHHHHHhcccCchHHHHHHHHHHHhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHhh
Q 007519 436 FLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLP-FEP-DHRIWGALLGACGF 513 (600)
Q Consensus 436 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~ 513 (600)
...++..+...++++.|..+++++.+. .|+ ....+++.+...++-.+|.+++++.. ..| +...+..-...+.
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl- 245 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLL- 245 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-
Confidence 445566667778889999999988764 344 55568888888888888888887764 344 4445555555667
Q ss_pred hhCCHHHHHHHHHHHHhhCCCCCCcHHHHhHHHHhhCCcHHHHHHHHHHh
Q 007519 514 CEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMG 563 (600)
Q Consensus 514 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 563 (600)
..++++.|+.+.+++.+..|++-.+|..|+.+|...|++++|+..+..+-
T Consensus 246 ~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 246 SKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred hcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 89999999999999999999999999999999999999999998776654
No 137
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.12 E-value=0.015 Score=59.58 Aligned_cols=100 Identities=14% Similarity=0.151 Sum_probs=61.8
Q ss_pred cCCChhHHHHHhhhcCCCCh-hhHHHHHHHH--HhcCChHHHHHHhhcCCC---CCceeHHHHHHHHHHCCChhHHHHHh
Q 007519 54 QNGRLSEARRLFEEMPERNV-VSWTAMICGL--ADAGRVCEARKLFEEMPE---RNVVSWNSMVVGLIRNGELNEARKVF 127 (600)
Q Consensus 54 ~~~~~~~A~~~~~~~~~~~~-~~~~~l~~~~--~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~ 127 (600)
..+++..|+....++.+..+ ..|..++.++ .|.|+.++|..+++.... .|..+...+-.+|...+..++|..+|
T Consensus 21 d~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Y 100 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLY 100 (932)
T ss_pred hhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHH
Confidence 45677777777777665222 2233444443 467777777777766543 35556666777777777777777777
Q ss_pred hcCCC--CCcccHHHHHHHHHhcCCHhH
Q 007519 128 NSMPI--KNVISWNAMIAGYVECCMMGE 153 (600)
Q Consensus 128 ~~~~~--~~~~~~~~l~~~~~~~~~~~~ 153 (600)
++... |+......+..+|.+.+++.+
T Consensus 101 e~~~~~~P~eell~~lFmayvR~~~yk~ 128 (932)
T KOG2053|consen 101 ERANQKYPSEELLYHLFMAYVREKSYKK 128 (932)
T ss_pred HHHHhhCCcHHHHHHHHHHHHHHHHHHH
Confidence 77766 554455555566666665543
No 138
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.12 E-value=5.3e-05 Score=61.91 Aligned_cols=100 Identities=20% Similarity=0.166 Sum_probs=71.0
Q ss_pred CCC-CcchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCCCcHHH
Q 007519 465 IQP-GPEHYVSMINLLGRAGKIKEAEEFVLRLP-FEP-DHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVV 541 (600)
Q Consensus 465 ~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 541 (600)
..| +......++..+...|++++|.+.++.+. ..| +...+..+...+. ..|++++|+..++++++..|+++..+..
T Consensus 12 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~-~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 90 (135)
T TIGR02552 12 LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQ-MLKEYEEAIDAYALAAALDPDDPRPYFH 90 (135)
T ss_pred CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCCCChHHHHH
Confidence 345 34556667777778888888888877763 344 4455555666666 7788888888888888888877788888
Q ss_pred HhHHHHhhCCcHHHHHHHHHHhhc
Q 007519 542 LCNIYAASGRHVEEHKLRMDMGLK 565 (600)
Q Consensus 542 l~~~~~~~g~~~~A~~~~~~~~~~ 565 (600)
++.++...|++++|...++...+.
T Consensus 91 la~~~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 91 AAECLLALGEPESALKALDLAIEI 114 (135)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh
Confidence 888888888888888866655543
No 139
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.10 E-value=0.00084 Score=70.60 Aligned_cols=280 Identities=8% Similarity=-0.018 Sum_probs=153.3
Q ss_pred CCcchHHHHHHHHHhcCChhHHHHHHHHHHhhhcCCCCCChh-hHHHHHHHHHhcCChhhHHHHhcccCCCCchhHHHHH
Q 007519 195 KNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQ-SCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMI 273 (600)
Q Consensus 195 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~ 273 (600)
.+...+..|+..+...+++++|.++.+...+. .|+.. .|..+...+.+.++.+.+..+ .++
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~-----~P~~i~~yy~~G~l~~q~~~~~~~~lv-------------~~l 90 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKE-----HKKSISALYISGILSLSRRPLNDSNLL-------------NLI 90 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-----CCcceehHHHHHHHHHhhcchhhhhhh-------------hhh
Confidence 35567888999998999999999999877764 55543 344444466666766555444 122
Q ss_pred HHHHhcCChHHHHHHHhhCCC--CChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhcccchhhh
Q 007519 274 DGYLSVGQVSNAYYLFHNMPD--RDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLG 351 (600)
Q Consensus 274 ~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a 351 (600)
.......++.-...+...+.. .+..++..+..+|-+.|+.+++...|+++++.. +-|....+.+...++.. ++++|
T Consensus 91 ~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA 168 (906)
T PRK14720 91 DSFSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKA 168 (906)
T ss_pred hhcccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHH
Confidence 222222223222222222222 233466777888888888888888888888765 44455666666666666 77777
Q ss_pred HHHHHHHhhhcCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHc-CCC
Q 007519 352 RQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLES-GTH 430 (600)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-~~~ 430 (600)
..++..+... +...+++.++.++|.++..-++. +++.-..+.+.+... |..
T Consensus 169 ~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~~-------------d~d~f~~i~~ki~~~~~~~ 220 (906)
T PRK14720 169 ITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNSD-------------DFDFFLRIERKVLGHREFT 220 (906)
T ss_pred HHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCcc-------------cchHHHHHHHHHHhhhccc
Confidence 7666554332 44555666666666666522221 112222222222221 112
Q ss_pred CChhHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHH
Q 007519 431 PNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQP-GPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLG 509 (600)
Q Consensus 431 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~ 509 (600)
--..++..+-..|-..++++++..+++.+.+ ..| |.....-++..|. + +.+ +...+.-.+.
T Consensus 221 ~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~---~~~~n~~a~~~l~~~y~--~----------kY~---~~~~~ee~l~ 282 (906)
T PRK14720 221 RLVGLLEDLYEPYKALEDWDEVIYILKKILE---HDNKNNKAREELIRFYK--E----------KYK---DHSLLEDYLK 282 (906)
T ss_pred hhHHHHHHHHHHHhhhhhhhHHHHHHHHHHh---cCCcchhhHHHHHHHHH--H----------Hcc---CcchHHHHHH
Confidence 2223344455566677778888888888774 344 3444444444443 1 111 1111111111
Q ss_pred H--HhhhhCCHHHHHHHHHHHHhhCCCCCCcHH
Q 007519 510 A--CGFCEGNAEIAEHAAKRLLELDPLNAPAHV 540 (600)
Q Consensus 510 ~--~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 540 (600)
. .......+..++.-|++.+..+|++-..+.
T Consensus 283 ~s~l~~~~~~~~~~i~~fek~i~f~~G~yv~H~ 315 (906)
T PRK14720 283 MSDIGNNRKPVKDCIADFEKNIVFDTGNFVYHR 315 (906)
T ss_pred HhccccCCccHHHHHHHHHHHeeecCCCEEEEc
Confidence 1 110224567778888888777776544444
No 140
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.08 E-value=0.00019 Score=59.28 Aligned_cols=123 Identities=14% Similarity=0.128 Sum_probs=67.5
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh---hHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCCC--cchHHHHH
Q 007519 402 NSMVMGFSHHGLANETLKVFESMLESGTHPNS---VTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPG--PEHYVSMI 476 (600)
Q Consensus 402 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~ 476 (600)
..++..+ ..++...+...++.+.+.. +.+. .....+...+...|++++|...|+.+... ...|. ......|+
T Consensus 16 ~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 16 EQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARLRLA 92 (145)
T ss_pred HHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHHHHH
Confidence 3334444 3666666666677766642 2221 22223345566677777777777777664 21221 22344566
Q ss_pred HHHhhcCChHHHHHHHHhCCCCC-CHHHHHHHHHHHhhhhCCHHHHHHHHHHH
Q 007519 477 NLLGRAGKIKEAEEFVLRLPFEP-DHRIWGALLGACGFCEGNAEIAEHAAKRL 528 (600)
Q Consensus 477 ~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~l~~~~~~~~g~~~~a~~~~~~~ 528 (600)
.++...|++++|+..++..+..+ .+..+......+. ..|+.++|+..|+++
T Consensus 93 ~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~-~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYL-AQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHH-HCCCHHHHHHHHHHh
Confidence 66777777777777776654222 2233333344455 667777777766654
No 141
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.05 E-value=0.014 Score=56.39 Aligned_cols=418 Identities=13% Similarity=0.132 Sum_probs=241.4
Q ss_pred CCcccHHHHHHHHHhcCCHhHHHHHHHhccc---CCchhHHHHHHHHHhcCChhHHHHHHccCCC--CCcchHHHHHHHH
Q 007519 133 KNVISWNAMIAGYVECCMMGEAIVLFEEMEE---RNVVTWTSMISGYCRAGEVEEGYCLFRRMPR--KNVVSWTAMIGGF 207 (600)
Q Consensus 133 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~ 207 (600)
-|..+|..|++-+... -++++++.++++.. .....|..-|..-.+..+++..+++|.++.. -++..|...+..-
T Consensus 18 ~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLnlDLW~lYl~YV 96 (656)
T KOG1914|consen 18 YDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLNLDLWKLYLSYV 96 (656)
T ss_pred ccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHhHHHHHHHHH
Confidence 4778899999877666 89999999999884 3567888889999999999999999998874 3555666655543
Q ss_pred Hh-cCChhH----HHHHHHHHHhhhcCCCCCCh-hhHHHHHHH---------HHhcCChhhHHHHhcccCCCCc----hh
Q 007519 208 AW-NGFHKE----SLLLFIEMKGICDNGNNCNV-QSCNSMING---------YIRFGRLEEAQNLFDTVPVRDE----IS 268 (600)
Q Consensus 208 ~~-~~~~~~----a~~~~~~~~~~~~~~~~~~~-~~~~~l~~~---------~~~~~~~~~a~~~~~~~~~~~~----~~ 268 (600)
.+ .|+... -.+.|+-.... .|+.+-+ ..|+..+.. +....+++...++|.++..... ..
T Consensus 97 R~~~~~~~~~r~~m~qAy~f~l~k--ig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlEkL 174 (656)
T KOG1914|consen 97 RETKGKLFGYREKMVQAYDFALEK--IGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLEKL 174 (656)
T ss_pred HHHccCcchHHHHHHHHHHHHHHH--hccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHHHH
Confidence 33 233333 23344444442 2444432 233333332 2334456677777877762111 11
Q ss_pred HH------HHHHH-------HHhcCChHHHHHHHhhCCC------CC---------------hhhHHHHHHHHHhCCC--
Q 007519 269 WT------SMIDG-------YLSVGQVSNAYYLFHNMPD------RD---------------AVAWTAMISGLVQNEL-- 312 (600)
Q Consensus 269 ~~------~l~~~-------~~~~~~~~~A~~~~~~~~~------~~---------------~~~~~~li~~~~~~g~-- 312 (600)
|+ .=++. --+...+-.|.++++++.. .+ +..|-.+|.-=...+-
T Consensus 175 W~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~t 254 (656)
T KOG1914|consen 175 WKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLRT 254 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCccc
Confidence 11 11111 1123345556666655432 11 1124334432111111
Q ss_pred ------hhHHHHHHHH-HHHCCCCCChhHHH-HHH----HHHhcccch-------hhhHHHHHHHhhhcCCCchhHHHHH
Q 007519 313 ------FVEATYLFME-MRAHGVPPLNATFS-VLF----GAAGATANI-------DLGRQIHCVLMKTESESDLILENCL 373 (600)
Q Consensus 313 ------~~~a~~~~~~-m~~~g~~p~~~~~~-~l~----~~~~~~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~l 373 (600)
..+..-.+++ |.-.+..|+..-.. ..+ +.+...|+. +++..+++.....-...+..+|..+
T Consensus 255 ~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~ 334 (656)
T KOG1914|consen 255 LDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFAL 334 (656)
T ss_pred ccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0122223332 22233444433211 111 122233333 3344444443333223334444443
Q ss_pred HHHHHhcC---ChHHHHHHHhcCC----CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-ChhHHHHHHHHhcc
Q 007519 374 ISMYAKCG---VIDNAYNIFSNMV----SRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHP-NSVTFLGILSACSH 445 (600)
Q Consensus 374 ~~~~~~~~---~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~ 445 (600)
.+.--..- ..+.....++++. ..-..+|-.+++.-.+..-.+.|..+|.+..+.+..+ +....++++..+|
T Consensus 335 a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c- 413 (656)
T KOG1914|consen 335 ADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC- 413 (656)
T ss_pred HhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-
Confidence 33221111 2444555555544 2223467778888888888999999999999998888 4556666666554
Q ss_pred cCchHHHHHHHHHHHhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhCC---CCCC--HHHHHHHHHHHhhhhCCHHH
Q 007519 446 AGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLP---FEPD--HRIWGALLGACGFCEGNAEI 520 (600)
Q Consensus 446 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~p~--~~~~~~l~~~~~~~~g~~~~ 520 (600)
.++..-|.++|+.-.+.++- ++.-....+..+...++-..|..+|++.. ..|+ ...|..++..-. .-||...
T Consensus 414 skD~~~AfrIFeLGLkkf~d--~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES-~vGdL~s 490 (656)
T KOG1914|consen 414 SKDKETAFRIFELGLKKFGD--SPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYES-NVGDLNS 490 (656)
T ss_pred cCChhHHHHHHHHHHHhcCC--ChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHH-hcccHHH
Confidence 67889999999988876443 34455667788889999999999998875 3443 467998888777 8899999
Q ss_pred HHHHHHHHHhhCCCC----CCcHHHHhHHHHhhCCcHHHHH
Q 007519 521 AEHAAKRLLELDPLN----APAHVVLCNIYAASGRHVEEHK 557 (600)
Q Consensus 521 a~~~~~~~~~~~p~~----~~~~~~l~~~~~~~g~~~~A~~ 557 (600)
+.++-++.....|.+ ...-..+.+-|.-.+++..-..
T Consensus 491 i~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~c~~~ 531 (656)
T KOG1914|consen 491 ILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYPCSLD 531 (656)
T ss_pred HHHHHHHHHHhcchhhcCCCChHHHHHHHHhhcccccccHH
Confidence 999999888866622 1223344555555555554444
No 142
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.04 E-value=0.01 Score=58.98 Aligned_cols=218 Identities=13% Similarity=0.088 Sum_probs=151.7
Q ss_pred ChhhHHHHhccCCCCCcchHHHHHHHHHcCCChhHHHHHhhhcCC-CChhhHHHHHHHH----------HhcCChHHHHH
Q 007519 26 FIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPE-RNVVSWTAMICGL----------ADAGRVCEARK 94 (600)
Q Consensus 26 ~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~l~~~~----------~~~g~~~~A~~ 94 (600)
..++|.+..+.- |.+..|..|.......-.++-|+..|-+... +.+.....|.... .--|++++|.+
T Consensus 678 gledA~qfiEdn--PHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek 755 (1189)
T KOG2041|consen 678 GLEDAIQFIEDN--PHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEK 755 (1189)
T ss_pred chHHHHHHHhcC--CchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhh
Confidence 356677666554 7777888888877777778888888777654 3332222222211 12489999999
Q ss_pred HhhcCCCCCceeHHHHHHHHHHCCChhHHHHHhhcCCC-----CCcccHHHHHHHHHhcCCHhHHHHHHHhcccCCchhH
Q 007519 95 LFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPI-----KNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTW 169 (600)
Q Consensus 95 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 169 (600)
+|-.+.++|.. +..+.+.||+-...++++.--. .-...++.+...++....|++|.+.+..... -
T Consensus 756 ~yld~drrDLA-----ielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~-----~ 825 (1189)
T KOG2041|consen 756 LYLDADRRDLA-----IELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD-----T 825 (1189)
T ss_pred hhhccchhhhh-----HHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-----h
Confidence 99888887754 7778888999999998887544 1225788888899999999999999886532 1
Q ss_pred HHHHHHHHhcCChhHHHHHHccCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHhcC
Q 007519 170 TSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFG 249 (600)
Q Consensus 170 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 249 (600)
...+.++.+..++++-+.+.+.+++ +....-.+...+...|.-++|.+.+-+-- .|- ..+..|...+
T Consensus 826 e~~~ecly~le~f~~LE~la~~Lpe-~s~llp~~a~mf~svGMC~qAV~a~Lr~s-------~pk-----aAv~tCv~Ln 892 (1189)
T KOG2041|consen 826 ENQIECLYRLELFGELEVLARTLPE-DSELLPVMADMFTSVGMCDQAVEAYLRRS-------LPK-----AAVHTCVELN 892 (1189)
T ss_pred HhHHHHHHHHHhhhhHHHHHHhcCc-ccchHHHHHHHHHhhchHHHHHHHHHhcc-------CcH-----HHHHHHHHHH
Confidence 2456777777788877777766665 44556677888888888888887765432 221 3456677888
Q ss_pred ChhhHHHHhcccCCCCchh
Q 007519 250 RLEEAQNLFDTVPVRDEIS 268 (600)
Q Consensus 250 ~~~~a~~~~~~~~~~~~~~ 268 (600)
+|.+|.++-+...-|...+
T Consensus 893 QW~~avelaq~~~l~qv~t 911 (1189)
T KOG2041|consen 893 QWGEAVELAQRFQLPQVQT 911 (1189)
T ss_pred HHHHHHHHHHhccchhHHH
Confidence 8888888888776555443
No 143
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.03 E-value=6.3e-05 Score=66.61 Aligned_cols=96 Identities=21% Similarity=0.206 Sum_probs=43.6
Q ss_pred ccCchHHHHHHHHHHHhhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHhCC-CCCCH-HHHHHHHHHHhhhhCCHHHH
Q 007519 445 HAGLVSRGWELFNAMFDVYKIQP-GPEHYVSMINLLGRAGKIKEAEEFVLRLP-FEPDH-RIWGALLGACGFCEGNAEIA 521 (600)
Q Consensus 445 ~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~-~~~~~l~~~~~~~~g~~~~a 521 (600)
+.+++.+|+..|.++++ +.| |+.-|..-..+|.+.|.++.|.+-.+... +.|.. .+|..+..++. ..|++++|
T Consensus 93 ~~~~Y~eAv~kY~~AI~---l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~-~~gk~~~A 168 (304)
T KOG0553|consen 93 KNKDYQEAVDKYTEAIE---LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYL-ALGKYEEA 168 (304)
T ss_pred HhhhHHHHHHHHHHHHh---cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHH-ccCcHHHH
Confidence 34444555555544442 244 34444444444555555555544444432 33332 24444444444 45555555
Q ss_pred HHHHHHHHhhCCCCCCcHHHHhH
Q 007519 522 EHAAKRLLELDPLNAPAHVVLCN 544 (600)
Q Consensus 522 ~~~~~~~~~~~p~~~~~~~~l~~ 544 (600)
++.|+++++++|++......|-.
T Consensus 169 ~~aykKaLeldP~Ne~~K~nL~~ 191 (304)
T KOG0553|consen 169 IEAYKKALELDPDNESYKSNLKI 191 (304)
T ss_pred HHHHHhhhccCCCcHHHHHHHHH
Confidence 55555555555544433333333
No 144
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.02 E-value=0.013 Score=58.32 Aligned_cols=218 Identities=11% Similarity=0.027 Sum_probs=134.7
Q ss_pred ChhHHHHHhhhcCCCChhhHHHHHHHHHhcCChHHHHHHhhcCCC-CCceeHHH----------HHHHHHHCCChhHHHH
Q 007519 57 RLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPE-RNVVSWNS----------MVVGLIRNGELNEARK 125 (600)
Q Consensus 57 ~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~----------l~~~~~~~~~~~~a~~ 125 (600)
.+++|.++.+.- |.+..|..|.......-.++-|+..|-+... +.+..--. -+..-.--|++++|.+
T Consensus 678 gledA~qfiEdn--PHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek 755 (1189)
T KOG2041|consen 678 GLEDAIQFIEDN--PHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEK 755 (1189)
T ss_pred chHHHHHHHhcC--CchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhh
Confidence 345555555443 6777888888776666667777766665543 22111000 1112223478888888
Q ss_pred HhhcCCCCCcccHHHHHHHHHhcCCHhHHHHHHHhccc-----CCchhHHHHHHHHHhcCChhHHHHHHccCCCCCcchH
Q 007519 126 VFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEE-----RNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSW 200 (600)
Q Consensus 126 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 200 (600)
++-.+-..|. .+..+.+.||+-...++++.-.. .-..+++.+.+.+.....|++|.+.+......
T Consensus 756 ~yld~drrDL-----Aielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~----- 825 (1189)
T KOG2041|consen 756 LYLDADRRDL-----AIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT----- 825 (1189)
T ss_pred hhhccchhhh-----hHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch-----
Confidence 8877755443 45667778888887777775432 12356777788888888888888887655321
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHhcCChhhHHHHhcccCCCCchhHHHHHHHHHhcC
Q 007519 201 TAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVG 280 (600)
Q Consensus 201 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~ 280 (600)
...+.++.+..++++-..+.+ ..+.+....-.+...+.+.|.-++|.+.|-+...|. ..+..|...+
T Consensus 826 e~~~ecly~le~f~~LE~la~--------~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~pk-----aAv~tCv~Ln 892 (1189)
T KOG2041|consen 826 ENQIECLYRLELFGELEVLAR--------TLPEDSELLPVMADMFTSVGMCDQAVEAYLRRSLPK-----AAVHTCVELN 892 (1189)
T ss_pred HhHHHHHHHHHhhhhHHHHHH--------hcCcccchHHHHHHHHHhhchHHHHHHHHHhccCcH-----HHHHHHHHHH
Confidence 124455555444444333322 235566667778888888888888888776655433 3456677778
Q ss_pred ChHHHHHHHhhCCCCChhh
Q 007519 281 QVSNAYYLFHNMPDRDAVA 299 (600)
Q Consensus 281 ~~~~A~~~~~~~~~~~~~~ 299 (600)
++.+|.++-++..-|.+.+
T Consensus 893 QW~~avelaq~~~l~qv~t 911 (1189)
T KOG2041|consen 893 QWGEAVELAQRFQLPQVQT 911 (1189)
T ss_pred HHHHHHHHHHhccchhHHH
Confidence 8888888877766554443
No 145
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.01 E-value=0.00099 Score=63.29 Aligned_cols=108 Identities=21% Similarity=0.257 Sum_probs=48.2
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCChhHHHH-HHHHhcccCchHHHHHHHHHHHhhcCCCCC-cchHHHHHHHHhhcCChH
Q 007519 409 SHHGLANETLKVFESMLESGTHPNSVTFLG-ILSACSHAGLVSRGWELFNAMFDVYKIQPG-PEHYVSMINLLGRAGKIK 486 (600)
Q Consensus 409 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~-l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~ 486 (600)
...|++++|+..++.+... .|+...|.. ....+...++.++|.+.++++... .|+ ......++.+|.+.|++.
T Consensus 317 ~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l---~P~~~~l~~~~a~all~~g~~~ 391 (484)
T COG4783 317 YLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALAL---DPNSPLLQLNLAQALLKGGKPQ 391 (484)
T ss_pred HHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc---CCCccHHHHHHHHHHHhcCChH
Confidence 3444455555555554442 333322222 224444555555555555555432 343 333444455555555555
Q ss_pred HHHHHHHhCC--CCCCHHHHHHHHHHHhhhhCCHHHHH
Q 007519 487 EAEEFVLRLP--FEPDHRIWGALLGACGFCEGNAEIAE 522 (600)
Q Consensus 487 ~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~g~~~~a~ 522 (600)
+|..++++.. .+.|+..|..+..+|. ..|+..++.
T Consensus 392 eai~~L~~~~~~~p~dp~~w~~LAqay~-~~g~~~~a~ 428 (484)
T COG4783 392 EAIRILNRYLFNDPEDPNGWDLLAQAYA-ELGNRAEAL 428 (484)
T ss_pred HHHHHHHHHhhcCCCCchHHHHHHHHHH-HhCchHHHH
Confidence 5555554432 2223444444555555 444444433
No 146
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.99 E-value=1.4e-05 Score=47.28 Aligned_cols=34 Identities=35% Similarity=0.532 Sum_probs=31.2
Q ss_pred hhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC
Q 007519 298 VAWTAMISGLVQNELFVEATYLFMEMRAHGVPPL 331 (600)
Q Consensus 298 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 331 (600)
.+||.+|.+|++.|++++|.++|++|.+.|+.||
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 3689999999999999999999999999999987
No 147
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.99 E-value=0.00013 Score=60.25 Aligned_cols=123 Identities=18% Similarity=0.129 Sum_probs=89.6
Q ss_pred HHHHHHHhcccCchHHHHHHHHHHHhhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHhCC-CCCCHH----HHHHHHH
Q 007519 436 FLGILSACSHAGLVSRGWELFNAMFDVYKIQP-GPEHYVSMINLLGRAGKIKEAEEFVLRLP-FEPDHR----IWGALLG 509 (600)
Q Consensus 436 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~----~~~~l~~ 509 (600)
|..++..+ ..++...+...++.+...++-.| .......++..+...|++++|...|+... ..|+.. ....+..
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~ 93 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLAR 93 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHH
Confidence 33444444 47888888888999987633322 23445567788999999999999999875 334432 3334555
Q ss_pred HHhhhhCCHHHHHHHHHHHHhhCCCCCCcHHHHhHHHHhhCCcHHHHHHHHH
Q 007519 510 ACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMD 561 (600)
Q Consensus 510 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 561 (600)
.+. ..|++++|+..++... -.+-.+..+...+.+|.+.|++++|...|+.
T Consensus 94 ~~~-~~~~~d~Al~~L~~~~-~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 94 ILL-QQGQYDEALATLQQIP-DEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHH-HcCCHHHHHHHHHhcc-CcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 666 8999999999997733 3333677888999999999999999997754
No 148
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.97 E-value=1.5e-05 Score=47.10 Aligned_cols=35 Identities=34% Similarity=0.739 Sum_probs=30.4
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh
Q 007519 399 VSWNSMVMGFSHHGLANETLKVFESMLESGTHPNS 433 (600)
Q Consensus 399 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 433 (600)
.+|+.++.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 36889999999999999999999999999988873
No 149
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.95 E-value=1.6e-05 Score=46.52 Aligned_cols=33 Identities=27% Similarity=0.365 Sum_probs=29.4
Q ss_pred hhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCC
Q 007519 298 VAWTAMISGLVQNELFVEATYLFMEMRAHGVPP 330 (600)
Q Consensus 298 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 330 (600)
.+|+.++.+|.+.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 578999999999999999999999999988887
No 150
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.93 E-value=0.00014 Score=57.79 Aligned_cols=99 Identities=16% Similarity=0.106 Sum_probs=47.4
Q ss_pred HHHHHhcccCchHHHHHHHHHHHhhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHhCC-CCCC----HHHHHHHHHHH
Q 007519 438 GILSACSHAGLVSRGWELFNAMFDVYKIQP-GPEHYVSMINLLGRAGKIKEAEEFVLRLP-FEPD----HRIWGALLGAC 511 (600)
Q Consensus 438 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~----~~~~~~l~~~~ 511 (600)
.+...+...|++++|.+.++.+...+.-.| ....+..++.++.+.|++++|.+.++.+. ..|+ ...+..+..++
T Consensus 7 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 86 (119)
T TIGR02795 7 DAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSL 86 (119)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHH
Confidence 333444455555555555555544311111 12334445555555555555555555542 2222 22344444444
Q ss_pred hhhhCCHHHHHHHHHHHHhhCCCCCC
Q 007519 512 GFCEGNAEIAEHAAKRLLELDPLNAP 537 (600)
Q Consensus 512 ~~~~g~~~~a~~~~~~~~~~~p~~~~ 537 (600)
. ..|+.++|+..++++++..|+++.
T Consensus 87 ~-~~~~~~~A~~~~~~~~~~~p~~~~ 111 (119)
T TIGR02795 87 Q-ELGDKEKAKATLQQVIKRYPGSSA 111 (119)
T ss_pred H-HhCChHHHHHHHHHHHHHCcCChh
Confidence 4 556666666666666666664433
No 151
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.92 E-value=9.8e-05 Score=55.85 Aligned_cols=93 Identities=27% Similarity=0.209 Sum_probs=68.5
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHhCC-CCCCH-HHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCCCcHHHHhHHHHh
Q 007519 471 HYVSMINLLGRAGKIKEAEEFVLRLP-FEPDH-RIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAA 548 (600)
Q Consensus 471 ~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~-~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 548 (600)
++..++..+...|++++|.+.+++.. ..|+. ..+..+...+. ..|++++|+..++++.+..|.++..+..++.++..
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYY-KLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHH
Confidence 35556777777888888888887753 34433 45555555666 77888888888888888888777788888888888
Q ss_pred hCCcHHHHHHHHHHhh
Q 007519 549 SGRHVEEHKLRMDMGL 564 (600)
Q Consensus 549 ~g~~~~A~~~~~~~~~ 564 (600)
.|++++|...+....+
T Consensus 81 ~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 81 LGKYEEALEAYEKALE 96 (100)
T ss_pred HHhHHHHHHHHHHHHc
Confidence 8888888887665543
No 152
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.90 E-value=2.5e-05 Score=45.71 Aligned_cols=33 Identities=24% Similarity=0.563 Sum_probs=28.1
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 007519 399 VSWNSMVMGFSHHGLANETLKVFESMLESGTHP 431 (600)
Q Consensus 399 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p 431 (600)
.+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 578888888888888888888888888888877
No 153
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.90 E-value=0.0001 Score=65.71 Aligned_cols=111 Identities=18% Similarity=0.063 Sum_probs=91.2
Q ss_pred CC-CcchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHhhhhC--CHHHHHHHHHHHHhhCCCCCCcHH
Q 007519 466 QP-GPEHYVSMINLLGRAGKIKEAEEFVLRLP-FEP-DHRIWGALLGACGFCEG--NAEIAEHAAKRLLELDPLNAPAHV 540 (600)
Q Consensus 466 ~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~g--~~~~a~~~~~~~~~~~p~~~~~~~ 540 (600)
.| |...|..|+..|...|+.+.|...|.+.. +.| ++..+..+..++....| +..++..+++++++++|.|..+..
T Consensus 152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~ 231 (287)
T COG4235 152 NPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALS 231 (287)
T ss_pred CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHH
Confidence 57 79999999999999999999999998874 444 55566666666542333 567899999999999999999999
Q ss_pred HHhHHHHhhCCcHHHHHHHHHHhhcCCccCCCcceE
Q 007519 541 VLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWL 576 (600)
Q Consensus 541 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 576 (600)
.|+..+...|++.+|...|+.|.+....-+|.-+.|
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~i 267 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLI 267 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHH
Confidence 999999999999999999999998877666654433
No 154
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.89 E-value=0.00013 Score=58.11 Aligned_cols=96 Identities=17% Similarity=0.033 Sum_probs=79.2
Q ss_pred chHHHHHHHHhhcCChHHHHHHHHhCC-CCCC----HHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCC---CCcHHH
Q 007519 470 EHYVSMINLLGRAGKIKEAEEFVLRLP-FEPD----HRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLN---APAHVV 541 (600)
Q Consensus 470 ~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~----~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~ 541 (600)
.++..++..+.+.|++++|.+.++.+. ..|+ ...+..+...+. ..|+++.|+..+++++...|++ +.++..
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYY-AQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH-hhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 466778889999999999999998874 3343 235555666777 9999999999999999998865 456889
Q ss_pred HhHHHHhhCCcHHHHHHHHHHhhcC
Q 007519 542 LCNIYAASGRHVEEHKLRMDMGLKG 566 (600)
Q Consensus 542 l~~~~~~~g~~~~A~~~~~~~~~~~ 566 (600)
++.++...|++++|...++.+.+..
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHHHhCChHHHHHHHHHHHHHC
Confidence 9999999999999999888777664
No 155
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.80 E-value=0.00092 Score=62.27 Aligned_cols=206 Identities=14% Similarity=0.153 Sum_probs=114.2
Q ss_pred hHHHHHHHHHcCCChhHHHHHhhhcCC-----CC----hhhHHHHHHHHHhcCChHHHHHHhhcCCCCCceeHHHHHHHH
Q 007519 44 SYNAMLSGFLQNGRLSEARRLFEEMPE-----RN----VVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGL 114 (600)
Q Consensus 44 ~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~ 114 (600)
.|......|-..|++++|.+.|.+..+ .+ ...|.....+|.+ +++++|++.++ ..+..|
T Consensus 37 ~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~-~~~~~Ai~~~~-----------~A~~~y 104 (282)
T PF14938_consen 37 LYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKK-GDPDEAIECYE-----------KAIEIY 104 (282)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH-TTHHHHHHHHH-----------HHHHHH
T ss_pred HHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh-hCHHHHHHHHH-----------HHHHHH
Confidence 455666777777777777777776542 11 1123333333322 25555554444 345667
Q ss_pred HHCCChhHHHHHhhcCCCCCcccHHHHHHHHHhc-CCHhHHHHHHHhccc-----CC----chhHHHHHHHHHhcCChhH
Q 007519 115 IRNGELNEARKVFNSMPIKNVISWNAMIAGYVEC-CMMGEAIVLFEEMEE-----RN----VVTWTSMISGYCRAGEVEE 184 (600)
Q Consensus 115 ~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~g~~~~ 184 (600)
...|++..|-+++.+ +...|... |+++.|.+.|++..+ .+ ...+..+...+.+.|++++
T Consensus 105 ~~~G~~~~aA~~~~~-----------lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~ 173 (282)
T PF14938_consen 105 REAGRFSQAAKCLKE-----------LAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEE 173 (282)
T ss_dssp HHCT-HHHHHHHHHH-----------HHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHH
T ss_pred HhcCcHHHHHHHHHH-----------HHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHH
Confidence 777777777665544 45666666 788888888877652 11 2345566777888888888
Q ss_pred HHHHHccCCC-----C----Cc-chHHHHHHHHHhcCChhHHHHHHHHHHhhhcCCCCCC--hhhHHHHHHHHHh--cCC
Q 007519 185 GYCLFRRMPR-----K----NV-VSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCN--VQSCNSMINGYIR--FGR 250 (600)
Q Consensus 185 A~~~~~~~~~-----~----~~-~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~--~~~ 250 (600)
|.++|+++.. + +. ..+...+-++...||+..|...+++.... ++++..+ -.....|+.++-. ...
T Consensus 174 A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~-~~~F~~s~E~~~~~~l~~A~~~~D~e~ 252 (282)
T PF14938_consen 174 AIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQ-DPSFASSREYKFLEDLLEAYEEGDVEA 252 (282)
T ss_dssp HHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTT-STTSTTSHHHHHHHHHHHHHHTT-CCC
T ss_pred HHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCCCCcHHHHHHHHHHHHHHhCCHHH
Confidence 8888876542 1 11 12334445667778888888888888764 3333333 2344555665543 234
Q ss_pred hhhHHHHhcccCCCCchhHHHHH
Q 007519 251 LEEAQNLFDTVPVRDEISWTSMI 273 (600)
Q Consensus 251 ~~~a~~~~~~~~~~~~~~~~~l~ 273 (600)
++.+..-|+.+.+.|+.--..|+
T Consensus 253 f~~av~~~d~~~~ld~w~~~~l~ 275 (282)
T PF14938_consen 253 FTEAVAEYDSISRLDNWKTKMLL 275 (282)
T ss_dssp HHHHCHHHTTSS---HHHHHHHH
T ss_pred HHHHHHHHcccCccHHHHHHHHH
Confidence 55666666666666655444433
No 156
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.77 E-value=5.3e-05 Score=55.67 Aligned_cols=20 Identities=25% Similarity=0.325 Sum_probs=8.4
Q ss_pred HHHHHhhcCChHHHHHHHHh
Q 007519 475 MINLLGRAGKIKEAEEFVLR 494 (600)
Q Consensus 475 l~~~~~~~g~~~~A~~~~~~ 494 (600)
++.+|.+.|++++|.+++++
T Consensus 31 la~~~~~~~~y~~A~~~~~~ 50 (84)
T PF12895_consen 31 LAQCYFQQGKYEEAIELLQK 50 (84)
T ss_dssp HHHHHHHTTHHHHHHHHHHC
T ss_pred HHHHHHHCCCHHHHHHHHHH
Confidence 34444444444444444433
No 157
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.76 E-value=0.022 Score=53.38 Aligned_cols=282 Identities=15% Similarity=0.141 Sum_probs=137.5
Q ss_pred hHHHHHHHHHhcCChHHHHHHhhcCCCCCceeHHHHHHHHHHCCChhHHHHHhhcCCCCCcccHHHHHHHHHhcCCHhHH
Q 007519 75 SWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEA 154 (600)
Q Consensus 75 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 154 (600)
+|..+...-...|+.+-|..+++.=..+. .-+..+...|+.+.|+.---+-.++|. +|..|+..-.... ..+-
T Consensus 2 S~a~IA~~A~~~GR~~LA~~LL~~Ep~~~-----~qVplLL~m~e~e~AL~kAi~SgD~DL-i~~vLl~L~~~l~-~s~f 74 (319)
T PF04840_consen 2 SYAEIARKAYEEGRPKLATKLLELEPRAS-----KQVPLLLKMGEDELALNKAIESGDTDL-IYLVLLHLKRKLS-LSQF 74 (319)
T ss_pred CHHHHHHHHHHcChHHHHHHHHHcCCChH-----HHHHHHhcCCchHHHHHHHHHcCCccH-HHHHHHHHHHhCC-HHHH
Confidence 46777788888999999998887433321 124445556666666542222222221 3333333222221 1111
Q ss_pred HHHHHhcccCCchhHHHHHHHHHhcCChhHHHHHHccCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhhhcCCCCCC
Q 007519 155 IVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCN 234 (600)
Q Consensus 155 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 234 (600)
..++.. .|. . ..+...|++..+.+.-..+|.+-.+........+-.++. ..+.+.-...+....+.+... .+
T Consensus 75 ~~il~~--~p~--a-~~l~~~~~r~~~~~~L~~~y~q~d~~~~~a~~~l~~~~~-~~~~~~~~~~L~~a~~~y~~~--k~ 146 (319)
T PF04840_consen 75 FKILNQ--NPV--A-SNLYKKYCREQDRELLKDFYYQEDRFQELANLHLQEALS-QKDVEEKISFLKQAQKLYSKS--KN 146 (319)
T ss_pred HHHHHh--Ccc--h-HHHHHHHHHhccHHHHHHHHHhcchHHHHHHHHHHHHHh-CCChHHHHHHHHHHHHHHHhc--ch
Confidence 111111 121 1 234445666666666555554432211112222222222 234444444444444332111 11
Q ss_pred hhhHHHHHHHHHhcCChhhHH-HHhcccCCCCchhHHHHHHHHHhcCChHHHHHHHhhCCCCChhhHHHHHHHHHhCCCh
Q 007519 235 VQSCNSMINGYIRFGRLEEAQ-NLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELF 313 (600)
Q Consensus 235 ~~~~~~l~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~ 313 (600)
......++.-..+.-++.+.+ .-+.. .-...+.+.-+.-+...|+...|.++-.+..-|+...|...+.+++..++|
T Consensus 147 ~~f~~~~~e~q~~Ll~~Q~~Le~~~~~--~f~~~Sl~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w 224 (319)
T PF04840_consen 147 DAFEAKLIEEQIKLLEYQKELEEKYNT--NFVGLSLNDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDW 224 (319)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcc--chhcCCHHHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCH
Confidence 112222222111111111000 00100 011223444455666778888888888777778888888888888888888
Q ss_pred hHHHHHHHHHHHCCCCCChhHHHHHHHHHhcccchhhhHHHHHHHhhhcCCCchhHHHHHHHHHHhcCChHHHHHH
Q 007519 314 VEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNI 389 (600)
Q Consensus 314 ~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 389 (600)
++-..+... +-++..|..++.+|.+.|+..+|..+...+ .+..-+..|.++|++.+|.+.
T Consensus 225 ~eL~~fa~s------kKsPIGyepFv~~~~~~~~~~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 225 DELEKFAKS------KKSPIGYEPFVEACLKYGNKKEASKYIPKI----------PDEERVEMYLKCGDYKEAAQE 284 (319)
T ss_pred HHHHHHHhC------CCCCCChHHHHHHHHHCCCHHHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHH
Confidence 776654331 223466777777777777777776666541 113456666777777666543
No 158
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.76 E-value=5.9e-05 Score=52.99 Aligned_cols=62 Identities=26% Similarity=0.156 Sum_probs=50.4
Q ss_pred CHHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCCCcHHHHhHHHHhhC-CcHHHHHHHHHH
Q 007519 500 DHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASG-RHVEEHKLRMDM 562 (600)
Q Consensus 500 ~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~ 562 (600)
++..|......+. ..|++++|+..|+++++++|+++.++..++.++...| ++++|.+.++..
T Consensus 2 ~a~~~~~~g~~~~-~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~a 64 (69)
T PF13414_consen 2 NAEAWYNLGQIYF-QQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKA 64 (69)
T ss_dssp SHHHHHHHHHHHH-HTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHH
Confidence 3456777777777 8888999999999999999888888888898888888 688888866544
No 159
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.76 E-value=0.04 Score=52.20 Aligned_cols=124 Identities=20% Similarity=0.269 Sum_probs=77.3
Q ss_pred HhcCC-hHHHHHHHhcCC---CCChhhHHHHHH----HHHh---cCChHHHHHHHHHHHHcCCCCChh----HHHHHHHH
Q 007519 378 AKCGV-IDNAYNIFSNMV---SRDLVSWNSMVM----GFSH---HGLANETLKVFESMLESGTHPNSV----TFLGILSA 442 (600)
Q Consensus 378 ~~~~~-~~~A~~~~~~~~---~~~~~~~~~l~~----~~~~---~~~~~~a~~~~~~m~~~~~~p~~~----~~~~l~~~ 442 (600)
-+.|. -++|.++++.+. +-|...-|.+.. +|.+ ...+.+-+.+-+-+.+.|++|-.. .-+.+.+|
T Consensus 390 W~~g~~dekalnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDA 469 (549)
T PF07079_consen 390 WEIGQCDEKALNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADA 469 (549)
T ss_pred HhcCCccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHH
Confidence 34444 677888877765 345544443322 2322 223444444445555667777543 23333332
Q ss_pred --hcccCchHHHHHHHHHHHhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHH
Q 007519 443 --CSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGA 506 (600)
Q Consensus 443 --~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ 506 (600)
+...|++.++.-.-..+. .+.|++.+|..++-.+....++++|..++..+| |+..+++.
T Consensus 470 EyLysqgey~kc~~ys~WL~---~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP--~n~~~~ds 530 (549)
T PF07079_consen 470 EYLYSQGEYHKCYLYSSWLT---KIAPSPQAYRLLGLCLMENKRYQEAWEYLQKLP--PNERMRDS 530 (549)
T ss_pred HHHHhcccHHHHHHHHHHHH---HhCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCC--CchhhHHH
Confidence 345788888876666555 468899999999888889999999999998887 45555443
No 160
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.75 E-value=0.0012 Score=66.44 Aligned_cols=140 Identities=14% Similarity=0.080 Sum_probs=85.1
Q ss_pred CCChhhHHHHHHHHHh--cC---ChHHHHHHHHHHHHcCCCCCh-hHHHHHHHHhccc--------CchHHHHHHHHHHH
Q 007519 395 SRDLVSWNSMVMGFSH--HG---LANETLKVFESMLESGTHPNS-VTFLGILSACSHA--------GLVSRGWELFNAMF 460 (600)
Q Consensus 395 ~~~~~~~~~l~~~~~~--~~---~~~~a~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~--------g~~~~a~~~~~~~~ 460 (600)
+.+...|..++.+... .+ +...|..+|++..+. .|+. ..+..+..++... +++..+.+..++..
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 5566777777776433 22 356788888888774 5654 3333322222111 12334444444433
Q ss_pred hhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhCC-CCCCHHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCCC
Q 007519 461 DVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLP-FEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAP 537 (600)
Q Consensus 461 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 537 (600)
.......++..+..++-.....|++++|...++++. ..|+...|..+...+. ..|+.++|+..+++++.++|.++.
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~-~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYE-LKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhcCCCCch
Confidence 221122245667777666667788888888887764 6677666777777777 778888888888888888886553
No 161
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.74 E-value=1.7e-05 Score=58.34 Aligned_cols=78 Identities=23% Similarity=0.261 Sum_probs=61.8
Q ss_pred cCChHHHHHHHHhCC-CCC---CHHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCCCcHHHHhHHHHhhCCcHHHHH
Q 007519 482 AGKIKEAEEFVLRLP-FEP---DHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHK 557 (600)
Q Consensus 482 ~g~~~~A~~~~~~~~-~~p---~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 557 (600)
.|+++.|+.+++++. ..| +...+..+..++. +.|++++|+.++++ .+.+|.++.....++.++...|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~-~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYF-QQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHH-HTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHH-HCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 578888988888874 333 3445555667777 99999999999999 77888777888888999999999999999
Q ss_pred HHHH
Q 007519 558 LRMD 561 (600)
Q Consensus 558 ~~~~ 561 (600)
.++.
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 7753
No 162
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.74 E-value=0.042 Score=51.94 Aligned_cols=127 Identities=17% Similarity=0.188 Sum_probs=82.5
Q ss_pred HHHHHHHHHhcccchhhhHHHHHHHhhhc-CCCchhHHHHHHHHHHhcCChHHHHHHHhcCC--CCChh-hHHHHHHHHH
Q 007519 334 TFSVLFGAAGATANIDLGRQIHCVLMKTE-SESDLILENCLISMYAKCGVIDNAYNIFSNMV--SRDLV-SWNSMVMGFS 409 (600)
Q Consensus 334 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~-~~~~l~~~~~ 409 (600)
.|...+....+..-++.|+.+|.++.+.+ +.+++.++++++..++ .|+...|..+|+.-. -||.. --+..+..+.
T Consensus 399 v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi 477 (660)
T COG5107 399 VFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPDSTLYKEKYLLFLI 477 (660)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 34445555556667777888888887777 5667777777777766 466777777777544 33433 3345566667
Q ss_pred hcCChHHHHHHHHHHHHcCCCCC--hhHHHHHHHHhcccCchHHHHHHHHHHHhh
Q 007519 410 HHGLANETLKVFESMLESGTHPN--SVTFLGILSACSHAGLVSRGWELFNAMFDV 462 (600)
Q Consensus 410 ~~~~~~~a~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 462 (600)
..++-+.|..+|+..... +..+ ...|..++..-..-|++..+..+=+++.+.
T Consensus 478 ~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~ 531 (660)
T COG5107 478 RINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL 531 (660)
T ss_pred HhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH
Confidence 777777888888755443 2222 356677777667777777777666666543
No 163
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.73 E-value=0.00035 Score=67.20 Aligned_cols=104 Identities=14% Similarity=0.106 Sum_probs=72.2
Q ss_pred HHhcccCchHHHHHHHHHHHhhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHhhhhCC
Q 007519 441 SACSHAGLVSRGWELFNAMFDVYKIQP-GPEHYVSMINLLGRAGKIKEAEEFVLRLP-FEP-DHRIWGALLGACGFCEGN 517 (600)
Q Consensus 441 ~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~g~ 517 (600)
..+...|+++.|++.|+++++. .| +...|..++.+|...|++++|+..++++. ..| +...|..+..++. ..|+
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~---~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~-~lg~ 85 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDL---DPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACM-KLEE 85 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHH-HhCC
Confidence 3345567777777777777753 45 46667777777788888888888777764 445 3455666666666 7888
Q ss_pred HHHHHHHHHHHHhhCCCCCCcHHHHhHHHHh
Q 007519 518 AEIAEHAAKRLLELDPLNAPAHVVLCNIYAA 548 (600)
Q Consensus 518 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 548 (600)
+++|+..++++++++|+++.....+..+..+
T Consensus 86 ~~eA~~~~~~al~l~P~~~~~~~~l~~~~~k 116 (356)
T PLN03088 86 YQTAKAALEKGASLAPGDSRFTKLIKECDEK 116 (356)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 8888888888888888777666665555333
No 164
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.69 E-value=0.088 Score=54.35 Aligned_cols=205 Identities=13% Similarity=0.157 Sum_probs=133.7
Q ss_pred HHHhcCChhhHHHHhccCCC--CCcchHHHHHHH--HHcCCChhHHHHHhhhcCC---CChhhHHHHHHHHHhcCChHHH
Q 007519 20 KYSKRGFIDEAKALFQLMPQ--RNVVSYNAMLSG--FLQNGRLSEARRLFEEMPE---RNVVSWTAMICGLADAGRVCEA 92 (600)
Q Consensus 20 ~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~--~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A 92 (600)
-....+++..|+....++.+ ||.. |.-++.+ +.+.|+.++|..+++.... .|..|...+-.+|.+.|..++|
T Consensus 18 d~ld~~qfkkal~~~~kllkk~Pn~~-~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~ 96 (932)
T KOG2053|consen 18 DLLDSSQFKKALAKLGKLLKKHPNAL-YAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEA 96 (932)
T ss_pred HHhhhHHHHHHHHHHHHHHHHCCCcH-HHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHH
Confidence 34566888888888888775 6654 3333433 5688999999988887653 5778999999999999999999
Q ss_pred HHHhhcCCC--CCceeHHHHHHHHHHCCChh----HHHHHhhcCCCCCcccHHHHHHHHHhcCC----------HhHHHH
Q 007519 93 RKLFEEMPE--RNVVSWNSMVVGLIRNGELN----EARKVFNSMPIKNVISWNAMIAGYVECCM----------MGEAIV 156 (600)
Q Consensus 93 ~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~----~a~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~A~~ 156 (600)
..+|++... |+......+..+|.+.+++. .|.++++..++ ++..+-++++.+...-. ..-|.+
T Consensus 97 ~~~Ye~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk-~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~ 175 (932)
T KOG2053|consen 97 VHLYERANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPK-RAYYFWSVISLILQSIFSENELLDPILLALAEK 175 (932)
T ss_pred HHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc-ccchHHHHHHHHHHhccCCcccccchhHHHHHH
Confidence 999999887 66555555666777777665 46667764433 44455555555543311 223455
Q ss_pred HHHhcccCC--chh---HHHHHHHHHhcCChhHHHHHHcc-----CCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhh
Q 007519 157 LFEEMEERN--VVT---WTSMISGYCRAGEVEEGYCLFRR-----MPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGI 226 (600)
Q Consensus 157 ~~~~~~~~~--~~~---~~~l~~~~~~~g~~~~A~~~~~~-----~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 226 (600)
.++.+.+.+ ..+ ...-...+...|++++|..++.. ....+...-+.-+..+...+++.+..++-.++...
T Consensus 176 m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k 255 (932)
T KOG2053|consen 176 MVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEK 255 (932)
T ss_pred HHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHh
Confidence 555555322 111 11223345567889999988832 22223333445566777788888888888877765
No 165
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.68 E-value=0.051 Score=51.06 Aligned_cols=274 Identities=13% Similarity=0.076 Sum_probs=149.8
Q ss_pred hHHHHHHHHHcCCChhHHHHHhhhcCCCChhhHHHHHHHHHhcCChHHHHHHhhcCCCCCce-eHHHHHHHHHHCCChhH
Q 007519 44 SYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVV-SWNSMVVGLIRNGELNE 122 (600)
Q Consensus 44 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~ 122 (600)
+|..+...-...|+..-|..+++.=+.+... +-.+.+-|+.+.|+.--- ...|+. +|..|+.. -+.-....
T Consensus 2 S~a~IA~~A~~~GR~~LA~~LL~~Ep~~~~q-----VplLL~m~e~e~AL~kAi--~SgD~DLi~~vLl~L-~~~l~~s~ 73 (319)
T PF04840_consen 2 SYAEIARKAYEEGRPKLATKLLELEPRASKQ-----VPLLLKMGEDELALNKAI--ESGDTDLIYLVLLHL-KRKLSLSQ 73 (319)
T ss_pred CHHHHHHHHHHcChHHHHHHHHHcCCChHHH-----HHHHhcCCchHHHHHHHH--HcCCccHHHHHHHHH-HHhCCHHH
Confidence 5788888888999999999988865443221 344556677666643222 223333 34444432 22222222
Q ss_pred HHHHhhcCCCCCcccHHHHHHHHHhcCCHhHHHHHHHhcccCCchhHHHHHHHHHhcCC-------hhHHHHHHccCCCC
Q 007519 123 ARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGE-------VEEGYCLFRRMPRK 195 (600)
Q Consensus 123 a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~-------~~~A~~~~~~~~~~ 195 (600)
-..++... |. -..+...|++..+.+.-..+|.+-.+........+-.++.. .+ +..|.+.|......
T Consensus 74 f~~il~~~--p~---a~~l~~~~~r~~~~~~L~~~y~q~d~~~~~a~~~l~~~~~~-~~~~~~~~~L~~a~~~y~~~k~~ 147 (319)
T PF04840_consen 74 FFKILNQN--PV---ASNLYKKYCREQDRELLKDFYYQEDRFQELANLHLQEALSQ-KDVEEKISFLKQAQKLYSKSKND 147 (319)
T ss_pred HHHHHHhC--cc---hHHHHHHHHHhccHHHHHHHHHhcchHHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHhcchh
Confidence 22222222 21 13344455665565555555543222111111112222211 22 23344444433221
Q ss_pred CcchHHHHHHHHHhcCChhHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHhcCChhhHHHHhcccCCCCchhHHHHHHH
Q 007519 196 NVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDG 275 (600)
Q Consensus 196 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~ 275 (600)
.....++.-.. +-+++-+++...+ +......+.+.-+.-+...|+...|.++-.+..-|+..-|...+.+
T Consensus 148 --~f~~~~~e~q~------~Ll~~Q~~Le~~~--~~~f~~~Sl~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~a 217 (319)
T PF04840_consen 148 --AFEAKLIEEQI------KLLEYQKELEEKY--NTNFVGLSLNDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKA 217 (319)
T ss_pred --HHHHHHHHHHH------HHHHHHHHHHHHh--ccchhcCCHHHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 11111111111 1111111111111 1122234556667777788888899999888888888899999999
Q ss_pred HHhcCChHHHHHHHhhCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhcccchhhhHH
Q 007519 276 YLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQ 353 (600)
Q Consensus 276 ~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~ 353 (600)
++..+++++-..+-.. ++++..|...+.+|.+.|+..+|..+... ++ +..-+..|.+.|++..|.+
T Consensus 218 La~~~~w~eL~~fa~s--kKsPIGyepFv~~~~~~~~~~eA~~yI~k-----~~-----~~~rv~~y~~~~~~~~A~~ 283 (319)
T PF04840_consen 218 LAENKDWDELEKFAKS--KKSPIGYEPFVEACLKYGNKKEASKYIPK-----IP-----DEERVEMYLKCGDYKEAAQ 283 (319)
T ss_pred HHhcCCHHHHHHHHhC--CCCCCChHHHHHHHHHCCCHHHHHHHHHh-----CC-----hHHHHHHHHHCCCHHHHHH
Confidence 9999999888776554 45678889999999999998888887775 12 2344556666777666544
No 166
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.68 E-value=0.0012 Score=56.43 Aligned_cols=128 Identities=18% Similarity=0.215 Sum_probs=84.0
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--hhHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCC-CcchHHH
Q 007519 398 LVSWNSMVMGFSHHGLANETLKVFESMLESGTHPN--SVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQP-GPEHYVS 474 (600)
Q Consensus 398 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~ 474 (600)
...+..+...+...|++++|...|++..+....+. ...+..+..++.+.|++++|...++++.+. .| +...+..
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~ 111 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL---NPKQPSALNN 111 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcccHHHHHH
Confidence 34566667777788888888888888876432222 245667777788888888888888888753 45 4556667
Q ss_pred HHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCCCcHHHHhHHHHhhC
Q 007519 475 MINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASG 550 (600)
Q Consensus 475 l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 550 (600)
++.+|...|+...+..-++. ..+.+++|++.++++++.+|++ +..++..+...|
T Consensus 112 lg~~~~~~g~~~~a~~~~~~-------------------A~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~ 165 (172)
T PRK02603 112 IAVIYHKRGEKAEEAGDQDE-------------------AEALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTG 165 (172)
T ss_pred HHHHHHHcCChHhHhhCHHH-------------------HHHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcC
Confidence 77777777776665533322 1233567888888888888855 444444444333
No 167
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.67 E-value=0.048 Score=50.64 Aligned_cols=268 Identities=14% Similarity=0.124 Sum_probs=164.1
Q ss_pred cCChHHHHHHHhhCC---CCChhhHHHHHHH--HHhCCChhHHHHHHHHHHHCCCCCChh--HHHHHHHHHhcccchhhh
Q 007519 279 VGQVSNAYYLFHNMP---DRDAVAWTAMISG--LVQNELFVEATYLFMEMRAHGVPPLNA--TFSVLFGAAGATANIDLG 351 (600)
Q Consensus 279 ~~~~~~A~~~~~~~~---~~~~~~~~~li~~--~~~~g~~~~a~~~~~~m~~~g~~p~~~--~~~~l~~~~~~~~~~~~a 351 (600)
.|+-..|.++-.+.. ..|....-.++.+ -.-.|+++.|.+-|+.|... |... .+..|.-..-+.|+.+.|
T Consensus 97 AGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaA 173 (531)
T COG3898 97 AGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAA 173 (531)
T ss_pred cCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHH
Confidence 344455554443322 2344444344433 23468888888888888752 2221 233333344567777777
Q ss_pred HHHHHHHhhhcCCCchhHHHHHHHHHHhcCChHHHHHHHhcCC-----CCChh--hHHHHHHHHH---hcCChHHHHHHH
Q 007519 352 RQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMV-----SRDLV--SWNSMVMGFS---HHGLANETLKVF 421 (600)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-----~~~~~--~~~~l~~~~~---~~~~~~~a~~~~ 421 (600)
+++-......-.. -.......+...+..|+++.|+++++.-. .+++. .-..|+.+-+ -..+...|...-
T Consensus 174 r~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A 252 (531)
T COG3898 174 RHYAERAAEKAPQ-LPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDA 252 (531)
T ss_pred HHHHHHHHhhccC-CchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHH
Confidence 7777665544332 23455677888888899999888887654 34432 1122222211 123455565555
Q ss_pred HHHHHcCCCCChhHHH-HHHHHhcccCchHHHHHHHHHHHhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhC---C-
Q 007519 422 ESMLESGTHPNSVTFL-GILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRL---P- 496 (600)
Q Consensus 422 ~~m~~~~~~p~~~~~~-~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~- 496 (600)
.+..+ +.|+..--. ....++.+.|+..++-.+++.+-+. .|.+.++.. ..+.+.|+.. ..-+++. .
T Consensus 253 ~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~---ePHP~ia~l--Y~~ar~gdta--~dRlkRa~~L~s 323 (531)
T COG3898 253 LEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKA---EPHPDIALL--YVRARSGDTA--LDRLKRAKKLES 323 (531)
T ss_pred HHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhc---CCChHHHHH--HHHhcCCCcH--HHHHHHHHHHHh
Confidence 54443 577764333 3347889999999999999998754 676665543 3345666543 2222222 1
Q ss_pred CCCCHH-HHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCCCcHHHHhHHHHhh-CCcHHHHHHHHH
Q 007519 497 FEPDHR-IWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAAS-GRHVEEHKLRMD 561 (600)
Q Consensus 497 ~~p~~~-~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~ 561 (600)
++|++. +......+.. ..|++..|..-.+.+....| ...+|..|+++-... |+-.++..+.-.
T Consensus 324 lk~nnaes~~~va~aAl-da~e~~~ARa~Aeaa~r~~p-res~~lLlAdIeeAetGDqg~vR~wlAq 388 (531)
T COG3898 324 LKPNNAESSLAVAEAAL-DAGEFSAARAKAEAAAREAP-RESAYLLLADIEEAETGDQGKVRQWLAQ 388 (531)
T ss_pred cCccchHHHHHHHHHHH-hccchHHHHHHHHHHhhhCc-hhhHHHHHHHHHhhccCchHHHHHHHHH
Confidence 456543 4445555556 78999999999999999999 888999999987655 998888886643
No 168
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.66 E-value=0.0003 Score=67.70 Aligned_cols=89 Identities=15% Similarity=0.003 Sum_probs=76.3
Q ss_pred HHHHHhhcCChHHHHHHHHhCC-CCCC-HHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCCCcHHHHhHHHHhhCCc
Q 007519 475 MINLLGRAGKIKEAEEFVLRLP-FEPD-HRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRH 552 (600)
Q Consensus 475 l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 552 (600)
.+..+...|++++|++.++++. ..|+ ...+..+..++. ..|++++|+..++++++++|+++..|..++.+|...|++
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~-~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANI-KLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCH
Confidence 4566778999999999999875 5554 556666777777 999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhh
Q 007519 553 VEEHKLRMDMGL 564 (600)
Q Consensus 553 ~~A~~~~~~~~~ 564 (600)
++|...++...+
T Consensus 87 ~eA~~~~~~al~ 98 (356)
T PLN03088 87 QTAKAALEKGAS 98 (356)
T ss_pred HHHHHHHHHHHH
Confidence 999997766543
No 169
>PRK15331 chaperone protein SicA; Provisional
Probab=97.64 E-value=0.00053 Score=55.70 Aligned_cols=93 Identities=11% Similarity=-0.014 Sum_probs=76.1
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCCCcHHHHhHHHHh
Q 007519 471 HYVSMINLLGRAGKIKEAEEFVLRLP-FEP-DHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAA 548 (600)
Q Consensus 471 ~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 548 (600)
.....+.-+...|++++|..+|+-+. ..| +..-|..+..++. ..+++++|+..|..+..++++||..+...+..+..
T Consensus 39 ~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q-~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~ 117 (165)
T PRK15331 39 GLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQ-LKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLL 117 (165)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHH
Confidence 34445556678999999999998874 334 4555666666677 89999999999999999999999999999999999
Q ss_pred hCCcHHHHHHHHHHhh
Q 007519 549 SGRHVEEHKLRMDMGL 564 (600)
Q Consensus 549 ~g~~~~A~~~~~~~~~ 564 (600)
.|+.+.|...++...+
T Consensus 118 l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 118 MRKAAKARQCFELVNE 133 (165)
T ss_pred hCCHHHHHHHHHHHHh
Confidence 9999999997766655
No 170
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.63 E-value=9.8e-05 Score=51.09 Aligned_cols=50 Identities=26% Similarity=0.179 Sum_probs=29.7
Q ss_pred hhCCHHHHHHHHHHHHhhCCCCCCcHHHHhHHHHhhCCcHHHHHHHHHHh
Q 007519 514 CEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMG 563 (600)
Q Consensus 514 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 563 (600)
..|++++|+..++++++..|+++.++..++.++...|++++|..+++.+.
T Consensus 9 ~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~ 58 (65)
T PF13432_consen 9 QQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERAL 58 (65)
T ss_dssp HCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 55666666666666666666666666666666666666666666555443
No 171
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.61 E-value=0.00017 Score=49.82 Aligned_cols=61 Identities=28% Similarity=0.260 Sum_probs=45.9
Q ss_pred HHHHHhhcCChHHHHHHHHhCC-CCCCH-HHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCC
Q 007519 475 MINLLGRAGKIKEAEEFVLRLP-FEPDH-RIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNA 536 (600)
Q Consensus 475 l~~~~~~~g~~~~A~~~~~~~~-~~p~~-~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 536 (600)
++..+.+.|++++|.+.|+++. ..|+. ..+..+..++. ..|++++|+..++++++..|++|
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~-~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILY-QQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHH-HTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCcCCC
Confidence 5667888889999998888864 55654 45566666666 88999999999999999998664
No 172
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.58 E-value=0.0045 Score=60.76 Aligned_cols=112 Identities=11% Similarity=0.031 Sum_probs=64.9
Q ss_pred HHHHHccCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHhcCChhhHHHHhcccCCC
Q 007519 185 GYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVR 264 (600)
Q Consensus 185 A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 264 (600)
+.++-+++...+..+...+...+.+...+..|-++|..|-. ...++......++|++|..+-+...+-
T Consensus 735 lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD------------~ksiVqlHve~~~W~eAFalAe~hPe~ 802 (1081)
T KOG1538|consen 735 LIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGD------------LKSLVQLHVETQRWDEAFALAEKHPEF 802 (1081)
T ss_pred HHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhcc------------HHHHhhheeecccchHhHhhhhhCccc
Confidence 33333344334444555555555555566666666666542 124445556666666666666666544
Q ss_pred CchhHHHHHHHHHhcCChHHHHHHHhhCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHC
Q 007519 265 DEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAH 326 (600)
Q Consensus 265 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 326 (600)
-+.+|..-.+-++...++++|.+. |.+.|+..+|.++++++-..
T Consensus 803 ~~dVy~pyaqwLAE~DrFeEAqkA------------------fhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 803 KDDVYMPYAQWLAENDRFEEAQKA------------------FHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred cccccchHHHHhhhhhhHHHHHHH------------------HHHhcchHHHHHHHHHhhhh
Confidence 444555555555566666665544 56778888888888877654
No 173
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.57 E-value=0.005 Score=50.61 Aligned_cols=132 Identities=12% Similarity=0.102 Sum_probs=91.7
Q ss_pred CCCChhHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhCC-CCCC---HHHH
Q 007519 429 THPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLP-FEPD---HRIW 504 (600)
Q Consensus 429 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~---~~~~ 504 (600)
..|+...-..+..+..+.|+..+|...|++...- -+.-|+.....+..+....+++..|...++++. .+|. +...
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG-~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~ 163 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSG-IFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGH 163 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhcc-ccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCch
Confidence 4566666666777778888888888888877752 233367777778888888888888888877753 2221 2233
Q ss_pred HHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCCCcHHHHhHHHHhhCCcHHHHHHHHHHh
Q 007519 505 GALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMG 563 (600)
Q Consensus 505 ~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 563 (600)
..+...+. ..|..++|+..|+.+++-.| .+..-...+..+.++|+.++|..-+..+.
T Consensus 164 Ll~aR~la-a~g~~a~Aesafe~a~~~yp-g~~ar~~Y~e~La~qgr~~ea~aq~~~v~ 220 (251)
T COG4700 164 LLFARTLA-AQGKYADAESAFEVAISYYP-GPQARIYYAEMLAKQGRLREANAQYVAVV 220 (251)
T ss_pred HHHHHHHH-hcCCchhHHHHHHHHHHhCC-CHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 34555666 77888888888888888888 67666677777788888777776444433
No 174
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.56 E-value=0.0006 Score=58.23 Aligned_cols=82 Identities=22% Similarity=0.122 Sum_probs=56.8
Q ss_pred cchHHHHHHHHhhcCChHHHHHHHHhCC-CCCC----HHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCCCcHHHHh
Q 007519 469 PEHYVSMINLLGRAGKIKEAEEFVLRLP-FEPD----HRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLC 543 (600)
Q Consensus 469 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~----~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 543 (600)
...+..++..+...|++++|...+++.. ..|+ ...+..+...+. ..|++++|+..++++++..|+++..+..++
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 113 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYA-SNGEHDKALEYYHQALELNPKQPSALNNIA 113 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence 4456666777777777777777776653 2222 245556666666 778888888888888888887777777777
Q ss_pred HHHHhhCC
Q 007519 544 NIYAASGR 551 (600)
Q Consensus 544 ~~~~~~g~ 551 (600)
.++...|+
T Consensus 114 ~~~~~~g~ 121 (172)
T PRK02603 114 VIYHKRGE 121 (172)
T ss_pred HHHHHcCC
Confidence 77777666
No 175
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.55 E-value=0.00022 Score=63.32 Aligned_cols=85 Identities=21% Similarity=0.144 Sum_probs=73.2
Q ss_pred HHHHhhcCChHHHHHHHHhCC-CCCCHHH-HHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCCCcHHHHhHHHHhhCCcH
Q 007519 476 INLLGRAGKIKEAEEFVLRLP-FEPDHRI-WGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHV 553 (600)
Q Consensus 476 ~~~~~~~g~~~~A~~~~~~~~-~~p~~~~-~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 553 (600)
+.-+.+.+++++|...|.+.. +.|...+ |..-..+|. +.|.++.|++-.+.++.++|....+|..|+.+|...|+++
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~-~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYS-KLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHH-HhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHH
Confidence 444678899999999998864 7776555 556666788 9999999999999999999999999999999999999999
Q ss_pred HHHHHHHH
Q 007519 554 EEHKLRMD 561 (600)
Q Consensus 554 ~A~~~~~~ 561 (600)
+|.+.|+.
T Consensus 167 ~A~~aykK 174 (304)
T KOG0553|consen 167 EAIEAYKK 174 (304)
T ss_pred HHHHHHHh
Confidence 99997643
No 176
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.54 E-value=0.00056 Score=58.19 Aligned_cols=91 Identities=16% Similarity=-0.015 Sum_probs=72.0
Q ss_pred cchHHHHHHHHhhcCChHHHHHHHHhCC-CCCC----HHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCCCcHHHHh
Q 007519 469 PEHYVSMINLLGRAGKIKEAEEFVLRLP-FEPD----HRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLC 543 (600)
Q Consensus 469 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~----~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 543 (600)
...+..++..+...|++++|...+++.. ..|+ ..++..+...+. ..|+.++|+..+++++++.|.+...+..++
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~-~~g~~~eA~~~~~~Al~~~~~~~~~~~~la 113 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHT-SNGEHTKALEYYFQALERNPFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCcCcHHHHHHHH
Confidence 5567778888888899999999888763 2232 246777777788 899999999999999999998888888888
Q ss_pred HHHH-------hhCCcHHHHHHHH
Q 007519 544 NIYA-------ASGRHVEEHKLRM 560 (600)
Q Consensus 544 ~~~~-------~~g~~~~A~~~~~ 560 (600)
.++. ..|++++|...++
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~ 137 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFD 137 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHH
Confidence 8888 7888887766443
No 177
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.54 E-value=0.0019 Score=59.86 Aligned_cols=132 Identities=16% Similarity=0.218 Sum_probs=93.8
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHH-hcccCchHHHHHHHHHHHhhcCCCCCcchHHHHHH
Q 007519 399 VSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSA-CSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMIN 477 (600)
Q Consensus 399 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~-~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 477 (600)
.+|-.++....+.+..+.|..+|.+..+.+ ..+...|...... +...++.+.|.++|+...+. +..+...|...+.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~--f~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK--FPSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH--HTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHH
Confidence 357778888888888888999998887432 3344445444443 33356777799999998875 3346677888888
Q ss_pred HHhhcCChHHHHHHHHhCC-CCCCH----HHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCC
Q 007519 478 LLGRAGKIKEAEEFVLRLP-FEPDH----RIWGALLGACGFCEGNAEIAEHAAKRLLELDPL 534 (600)
Q Consensus 478 ~~~~~g~~~~A~~~~~~~~-~~p~~----~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~ 534 (600)
.+.+.|+.+.|..+|++.. .-|.. ..|...+..-. +.|+.+....+.+++.+..|+
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~-~~Gdl~~v~~v~~R~~~~~~~ 139 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFES-KYGDLESVRKVEKRAEELFPE 139 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHH-HHS-HHHHHHHHHHHHHHTTT
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHhhh
Confidence 8899999999999998864 22332 47887777777 889999999999999888874
No 178
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.53 E-value=0.00013 Score=41.51 Aligned_cols=31 Identities=39% Similarity=0.624 Sum_probs=25.2
Q ss_pred hhHHHHHHHHHhCCChhHHHHHHHHHHHCCC
Q 007519 298 VAWTAMISGLVQNELFVEATYLFMEMRAHGV 328 (600)
Q Consensus 298 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 328 (600)
++|+.++++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 3688888888888888888888888887764
No 179
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.53 E-value=0.00093 Score=64.33 Aligned_cols=127 Identities=11% Similarity=0.120 Sum_probs=99.1
Q ss_pred HHHHHHhhhcCCCCCChhhHHHHHHHHHhcCChhhHHHHhcccCC------CCchhHHHHHHHHHhcCChHHHHHHHhhC
Q 007519 219 LFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPV------RDEISWTSMIDGYLSVGQVSNAYYLFHNM 292 (600)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 292 (600)
++..|.+.+..+.+.+...+..+++.+....+++.+..++.+... --+.+..+++..|.+.|..+.++.+++.=
T Consensus 50 ~~~~l~~k~~~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~ 129 (429)
T PF10037_consen 50 LYSELDKKFERKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNR 129 (429)
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhCh
Confidence 666666666666777888888888888888888888888777651 23445678888888888888888888765
Q ss_pred CC----CChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhcc
Q 007519 293 PD----RDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGAT 345 (600)
Q Consensus 293 ~~----~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~ 345 (600)
.. ||..++|.+|..+.+.|++..|.++...|..++.-.+..|+...+.+|.+-
T Consensus 130 ~~yGiF~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 130 LQYGIFPDNFSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hhcccCCChhhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 54 788889999999999999999999888888877777777777777766554
No 180
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.52 E-value=0.0016 Score=60.34 Aligned_cols=77 Identities=17% Similarity=0.114 Sum_probs=37.4
Q ss_pred hhcCChHHHHHHHHhCC-CCC-----CHHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCCCcHHHHhHHHHhhCCcH
Q 007519 480 GRAGKIKEAEEFVLRLP-FEP-----DHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHV 553 (600)
Q Consensus 480 ~~~g~~~~A~~~~~~~~-~~p-----~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 553 (600)
.+.|++.+|.+.+.+.. +.| +...|.....+.. +.|+.++|+...+.+++++|.-...+..-+.++...++|+
T Consensus 260 fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~-rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e 338 (486)
T KOG0550|consen 260 FKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNI-RLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWE 338 (486)
T ss_pred hhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhc-ccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555554432 222 2233333333334 4555555555555555555544455555555555555555
Q ss_pred HHHH
Q 007519 554 EEHK 557 (600)
Q Consensus 554 ~A~~ 557 (600)
+|.+
T Consensus 339 ~AV~ 342 (486)
T KOG0550|consen 339 EAVE 342 (486)
T ss_pred HHHH
Confidence 5555
No 181
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.51 E-value=0.0021 Score=52.12 Aligned_cols=93 Identities=9% Similarity=0.007 Sum_probs=50.7
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh-hHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCC-CcchHHH
Q 007519 397 DLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNS-VTFLGILSACSHAGLVSRGWELFNAMFDVYKIQP-GPEHYVS 474 (600)
Q Consensus 397 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~ 474 (600)
+....-.+...+...|++++|..+|+.+... .|.. .-|..|..++-..|++++|+..|..+.. +.| ++..+-.
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~--Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~---L~~ddp~~~~~ 108 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIY--DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQ---IKIDAPQAPWA 108 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh---cCCCCchHHHH
Confidence 3333444444555666666666666665542 3332 3344444555556666666666666553 234 4555556
Q ss_pred HHHHHhhcCChHHHHHHHHh
Q 007519 475 MINLLGRAGKIKEAEEFVLR 494 (600)
Q Consensus 475 l~~~~~~~g~~~~A~~~~~~ 494 (600)
++.++...|+.+.|.+.|+.
T Consensus 109 ag~c~L~lG~~~~A~~aF~~ 128 (157)
T PRK15363 109 AAECYLACDNVCYAIKALKA 128 (157)
T ss_pred HHHHHHHcCCHHHHHHHHHH
Confidence 66666666666666665554
No 182
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.50 E-value=0.00012 Score=51.29 Aligned_cols=52 Identities=21% Similarity=0.267 Sum_probs=42.5
Q ss_pred hhCCHHHHHHHHHHHHhhCCCCCCcHHHHhHHHHhhCCcHHHHHHHHHHhhc
Q 007519 514 CEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLK 565 (600)
Q Consensus 514 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 565 (600)
..|++++|+..++++++..|+++.+...++.+|.+.|++++|.++++.+...
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 6788888888888888888888888888888888889988888877655443
No 183
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.50 E-value=0.00087 Score=50.43 Aligned_cols=88 Identities=24% Similarity=0.280 Sum_probs=41.7
Q ss_pred HhcccCchHHHHHHHHHHHhhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHhhhhCCH
Q 007519 442 ACSHAGLVSRGWELFNAMFDVYKIQP-GPEHYVSMINLLGRAGKIKEAEEFVLRLP-FEP-DHRIWGALLGACGFCEGNA 518 (600)
Q Consensus 442 ~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~g~~ 518 (600)
.+...|++++|...++.+.+. .| +...+..++..+...|++++|.+.++... ..| +...+..+...+. ..|+.
T Consensus 9 ~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 84 (100)
T cd00189 9 LYYKLGDYDEALEYYEKALEL---DPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYY-KLGKY 84 (100)
T ss_pred HHHHHhcHHHHHHHHHHHHhc---CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHH-HHHhH
Confidence 334444555555555444432 22 22344445555555555555555554432 222 2234444444444 55666
Q ss_pred HHHHHHHHHHHhhCC
Q 007519 519 EIAEHAAKRLLELDP 533 (600)
Q Consensus 519 ~~a~~~~~~~~~~~p 533 (600)
+.|...++++++..|
T Consensus 85 ~~a~~~~~~~~~~~~ 99 (100)
T cd00189 85 EEALEAYEKALELDP 99 (100)
T ss_pred HHHHHHHHHHHccCC
Confidence 666666666555554
No 184
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.50 E-value=5.2e-05 Score=43.92 Aligned_cols=34 Identities=35% Similarity=0.418 Sum_probs=31.3
Q ss_pred HHHHHHhhCCCCCCcHHHHhHHHHhhCCcHHHHH
Q 007519 524 AAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHK 557 (600)
Q Consensus 524 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 557 (600)
+|+++++++|+++.+|..|+.+|...|++++|++
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 3789999999999999999999999999999863
No 185
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.49 E-value=0.00076 Score=62.31 Aligned_cols=254 Identities=13% Similarity=0.004 Sum_probs=144.3
Q ss_pred HHhCCChhHHHHHHHHHHHCCCCCCh----hHHHHHHHHHhcccchhhhHHHHHH--Hhh--hcCCC-chhHHHHHHHHH
Q 007519 307 LVQNELFVEATYLFMEMRAHGVPPLN----ATFSVLFGAAGATANIDLGRQIHCV--LMK--TESES-DLILENCLISMY 377 (600)
Q Consensus 307 ~~~~g~~~~a~~~~~~m~~~g~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~--~~~--~~~~~-~~~~~~~l~~~~ 377 (600)
+|+.|++...+.+|+..++.| .-|. .+|..|-.+|...+++++|.+++.. ... .|-+. .......|.+.+
T Consensus 27 Lck~gdcraGv~ff~aA~qvG-TeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtl 105 (639)
T KOG1130|consen 27 LCKMGDCRAGVDFFKAALQVG-TEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTL 105 (639)
T ss_pred HHhccchhhhHHHHHHHHHhc-chHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchh
Confidence 567777777777777777766 2232 3344455566666777777766541 111 11110 111122344444
Q ss_pred HhcCChHHHHHHHhcCC---------CCChhhHHHHHHHHHhcCC--------------------hHHHHHHHHHHHH--
Q 007519 378 AKCGVIDNAYNIFSNMV---------SRDLVSWNSMVMGFSHHGL--------------------ANETLKVFESMLE-- 426 (600)
Q Consensus 378 ~~~~~~~~A~~~~~~~~---------~~~~~~~~~l~~~~~~~~~--------------------~~~a~~~~~~m~~-- 426 (600)
.-.|.+++|.....+-. -.....+-.+...|...|+ ++.|.+.|.+-.+
T Consensus 106 Kv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~ 185 (639)
T KOG1130|consen 106 KVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELS 185 (639)
T ss_pred hhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666655433322 0112233334444443331 2334444433221
Q ss_pred --cCCC-CChhHHHHHHHHhcccCchHHHHHHHHHH---HhhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHhCC---
Q 007519 427 --SGTH-PNSVTFLGILSACSHAGLVSRGWELFNAM---FDVYKIQP-GPEHYVSMINLLGRAGKIKEAEEFVLRLP--- 496 (600)
Q Consensus 427 --~~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~---~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--- 496 (600)
.|-. .....|..|...|.-.|+++.|+...+.- .+.+|-.. ....+..|+.++.-.|+++.|.+.++...
T Consensus 186 ~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LA 265 (639)
T KOG1130|consen 186 EKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLA 265 (639)
T ss_pred HHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHH
Confidence 1111 11245666666677778999988765532 22233322 35678889999999999999998887631
Q ss_pred -----CCCCHHHHHHHHHHHhhhhCCHHHHHHHHHHHHhh----C--CCCCCcHHHHhHHHHhhCCcHHHHHHHHHH
Q 007519 497 -----FEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLEL----D--PLNAPAHVVLCNIYAASGRHVEEHKLRMDM 562 (600)
Q Consensus 497 -----~~p~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~----~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 562 (600)
......+..++...|. -..+++.|+.+..+=+.+ + ......++.|+.++...|..++|..+.+.-
T Consensus 266 ielg~r~vEAQscYSLgNtyt-ll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~h 341 (639)
T KOG1130|consen 266 IELGNRTVEAQSCYSLGNTYT-LLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELH 341 (639)
T ss_pred HHhcchhHHHHHHHHhhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 1223444556666666 667888888877765542 1 224678889999999999999998855443
No 186
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.48 E-value=0.0032 Score=58.68 Aligned_cols=130 Identities=12% Similarity=0.070 Sum_probs=62.5
Q ss_pred HHHHHHHhc-CChHHHHHHHhhCCC-----CC----hhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC-----hh-H
Q 007519 271 SMIDGYLSV-GQVSNAYYLFHNMPD-----RD----AVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPL-----NA-T 334 (600)
Q Consensus 271 ~l~~~~~~~-~~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-----~~-~ 334 (600)
.+...|... |++++|++.|++..+ .. ...+..+...+.+.|++++|+++|++....-...+ .. .
T Consensus 119 ~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~ 198 (282)
T PF14938_consen 119 ELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEY 198 (282)
T ss_dssp HHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHH
Confidence 344455555 566666666655433 11 12445566667777777777777777665432211 11 1
Q ss_pred HHHHHHHHhcccchhhhHHHHHHHhhhc--CCCc--hhHHHHHHHHHHh--cCChHHHHHHHhcCCCCChhh
Q 007519 335 FSVLFGAAGATANIDLGRQIHCVLMKTE--SESD--LILENCLISMYAK--CGVIDNAYNIFSNMVSRDLVS 400 (600)
Q Consensus 335 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~--~~~~~~l~~~~~~--~~~~~~A~~~~~~~~~~~~~~ 400 (600)
+...+-++...||+..|...++...... +..+ ..+...|+.++-. ...++.|..-|+.+.+.|...
T Consensus 199 ~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~~ld~w~ 270 (282)
T PF14938_consen 199 FLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSISRLDNWK 270 (282)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS---HHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccCccHHHH
Confidence 2222224445566666666666555432 2222 3344445555533 334566666666666555443
No 187
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.46 E-value=0.00017 Score=40.95 Aligned_cols=30 Identities=37% Similarity=0.722 Sum_probs=22.6
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 007519 400 SWNSMVMGFSHHGLANETLKVFESMLESGT 429 (600)
Q Consensus 400 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~ 429 (600)
+|+.++++|++.|++++|.++|++|.+.|+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 677777777777777777777777777653
No 188
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.44 E-value=0.0031 Score=63.51 Aligned_cols=130 Identities=12% Similarity=0.091 Sum_probs=93.5
Q ss_pred CCCCChhHHHHHHHHhcc-----cCchHHHHHHHHHHHhhcCCCCC-cchHHHHHHHHhhc--------CChHHHHHHHH
Q 007519 428 GTHPNSVTFLGILSACSH-----AGLVSRGWELFNAMFDVYKIQPG-PEHYVSMINLLGRA--------GKIKEAEEFVL 493 (600)
Q Consensus 428 ~~~p~~~~~~~l~~~~~~-----~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~--------g~~~~A~~~~~ 493 (600)
+.+.+...|...+.+... .++.+.|.++|+++.+. .|+ ...+..+..++... +++..+.+..+
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l---dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~ 408 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS---EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELD 408 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 346677888888877543 23477999999999864 785 55666655554332 22344555555
Q ss_pred hCC----CCCCHHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCCCcHHHHhHHHHhhCCcHHHHHHHHHH
Q 007519 494 RLP----FEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDM 562 (600)
Q Consensus 494 ~~~----~~p~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 562 (600)
+.. ...++..+..+..... ..|++++|...++++++++| +...|..++.++...|+.++|.+.++..
T Consensus 409 ~a~al~~~~~~~~~~~ala~~~~-~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A 479 (517)
T PRK10153 409 NIVALPELNVLPRIYEILAVQAL-VKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTA 479 (517)
T ss_pred HhhhcccCcCChHHHHHHHHHHH-hcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 432 2334556666655555 78999999999999999999 7889999999999999999999966543
No 189
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.44 E-value=0.1 Score=48.58 Aligned_cols=284 Identities=14% Similarity=0.112 Sum_probs=151.6
Q ss_pred hHHHHHHHHHh--cCChHHHHHHhhcCC---CCCceeHHHHHH--HHHHCCChhHHHHHhhcCCC-CCccc--HHHHHHH
Q 007519 75 SWTAMICGLAD--AGRVCEARKLFEEMP---ERNVVSWNSMVV--GLIRNGELNEARKVFNSMPI-KNVIS--WNAMIAG 144 (600)
Q Consensus 75 ~~~~l~~~~~~--~g~~~~A~~~~~~~~---~~~~~~~~~l~~--~~~~~~~~~~a~~~~~~~~~-~~~~~--~~~l~~~ 144 (600)
.|..|-.+++. .|+-..|.+.-.+.. ..|......|+. .-.-.|+++.|.+-|+-|.. |.... ...|.-.
T Consensus 84 gyqALStGliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~dPEtRllGLRgLyle 163 (531)
T COG3898 84 GYQALSTGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDDPETRLLGLRGLYLE 163 (531)
T ss_pred HHHHHhhhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcChHHHHHhHHHHHHH
Confidence 34444444433 456666666555433 244444433333 23345777777777777765 32211 1122222
Q ss_pred HHhcCCHhHHHHHHHhccc--C-CchhHHHHHHHHHhcCChhHHHHHHccCCC-----CCcc--hHHHHHHHH---HhcC
Q 007519 145 YVECCMMGEAIVLFEEMEE--R-NVVTWTSMISGYCRAGEVEEGYCLFRRMPR-----KNVV--SWTAMIGGF---AWNG 211 (600)
Q Consensus 145 ~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~--~~~~li~~~---~~~~ 211 (600)
.-+.|+.+.|+..-+..-. | -.....+++...+..|+++.|+++++.-.. ++.. .-..|+.+- .-.-
T Consensus 164 Aqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~lda 243 (531)
T COG3898 164 AQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDA 243 (531)
T ss_pred HHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcC
Confidence 2355777777776665543 2 235566677777777777777777765432 3321 111122111 1123
Q ss_pred ChhHHHHHHHHHHhhhcCCCCCChh-hHHHHHHHHHhcCChhhHHHHhcccCCCCchhHHHHHHHHHhcCChHHH----H
Q 007519 212 FHKESLLLFIEMKGICDNGNNCNVQ-SCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNA----Y 286 (600)
Q Consensus 212 ~~~~a~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A----~ 286 (600)
+...|...-.+..+. .||.. .-....+++.+.|++.++-.+++.+-+..++.--..+..+.+.|+.... .
T Consensus 244 dp~~Ar~~A~~a~KL-----~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~lY~~ar~gdta~dRlkRa 318 (531)
T COG3898 244 DPASARDDALEANKL-----APDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIALLYVRARSGDTALDRLKRA 318 (531)
T ss_pred ChHHHHHHHHHHhhc-----CCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHHHHHHHhcCCCcHHHHHHHH
Confidence 455566655555543 55532 2334456677778887777777777644444434444445555554332 1
Q ss_pred HHHhhCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHH-hcccchhhhHHHHHHHhhhcCCC
Q 007519 287 YLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAA-GATANIDLGRQIHCVLMKTESES 365 (600)
Q Consensus 287 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~-~~~~~~~~a~~~~~~~~~~~~~~ 365 (600)
+-+..|+..+..+...+..+-...|++..|..--+.... ..|....|..|...- ...|+-.++...+....+.--.|
T Consensus 319 ~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~APrdP 396 (531)
T COG3898 319 KKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKAPRDP 396 (531)
T ss_pred HHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCCCCC
Confidence 234455555666666666777777777766665555544 356666666665533 34466666666666555544333
No 190
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.41 E-value=0.00033 Score=49.11 Aligned_cols=64 Identities=23% Similarity=0.267 Sum_probs=49.3
Q ss_pred cchHHHHHHHHhhcCChHHHHHHHHhCC-CCCC-HHHHHHHHHHHhhhhC-CHHHHHHHHHHHHhhCC
Q 007519 469 PEHYVSMINLLGRAGKIKEAEEFVLRLP-FEPD-HRIWGALLGACGFCEG-NAEIAEHAAKRLLELDP 533 (600)
Q Consensus 469 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~~g-~~~~a~~~~~~~~~~~p 533 (600)
+..|..++..+...|++++|+..|++.. ..|+ ...|..+..++. ..| ++++|+..++++++++|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~-~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYM-KLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHH-HTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH-HhCccHHHHHHHHHHHHHcCc
Confidence 4567778888888888888888887764 4554 456666666677 888 68999999999988887
No 191
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.35 E-value=0.028 Score=50.79 Aligned_cols=171 Identities=8% Similarity=0.029 Sum_probs=100.1
Q ss_pred HHHHHHhcCChHHHHHHHhcCC--CCC-hhh---HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh--hHHHHHHHHhc
Q 007519 373 LISMYAKCGVIDNAYNIFSNMV--SRD-LVS---WNSMVMGFSHHGLANETLKVFESMLESGTHPNS--VTFLGILSACS 444 (600)
Q Consensus 373 l~~~~~~~~~~~~A~~~~~~~~--~~~-~~~---~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~--~~~~~l~~~~~ 444 (600)
....+...|++++|.+.|+.+. -|+ ... .-.++.++.+.+++++|...+++..+. .|+. ..+...+.+.+
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~--~P~~~~~~~a~Y~~g~~ 115 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYVLYMRGLT 115 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CcCCCchHHHHHHHHHh
Confidence 3444556778888888877775 222 222 123456677788888888888888764 2322 22323333322
Q ss_pred c--c---------------Cc---hHHHHHHHHHHHhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHH
Q 007519 445 H--A---------------GL---VSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIW 504 (600)
Q Consensus 445 ~--~---------------g~---~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~ 504 (600)
. . .+ ...|...|+.++ .-|-.+.-..+|...+..+...--...+
T Consensus 116 ~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li----------------~~yP~S~ya~~A~~rl~~l~~~la~~e~ 179 (243)
T PRK10866 116 NMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLV----------------RGYPNSQYTTDATKRLVFLKDRLAKYEL 179 (243)
T ss_pred hhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHH----------------HHCcCChhHHHHHHHHHHHHHHHHHHHH
Confidence 1 0 01 122333333333 3333344445555544443211111111
Q ss_pred HHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCC---CcHHHHhHHHHhhCCcHHHHHHHHHHh
Q 007519 505 GALLGACGFCEGNAEIAEHAAKRLLELDPLNA---PAHVVLCNIYAASGRHVEEHKLRMDMG 563 (600)
Q Consensus 505 ~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~ 563 (600)
.+...|. +.|.+.-|+.-++.+++..|+.+ .+...++.+|...|..++|..+.+.+.
T Consensus 180 -~ia~~Y~-~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 180 -SVAEYYT-KRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred -HHHHHHH-HcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 3344466 88999999999999999888655 556688899999999999999776654
No 192
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.35 E-value=0.00069 Score=48.11 Aligned_cols=55 Identities=20% Similarity=0.015 Sum_probs=39.8
Q ss_pred HHhhhhCCHHHHHHHHHHHHhhCCCCCCcHHHHhHHHHhhCCcHHHHHHHHHHhhc
Q 007519 510 ACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLK 565 (600)
Q Consensus 510 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 565 (600)
.+. ..++++.|++.++++++++|+++..+...+.++...|++++|.+.++...+.
T Consensus 4 ~~~-~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 4 IYL-QQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHH-hCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 344 6777777777777777777777777777777777777777777766555433
No 193
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.34 E-value=0.001 Score=61.45 Aligned_cols=128 Identities=9% Similarity=0.020 Sum_probs=84.6
Q ss_pred HHHHHHHHHhcccchhhhHHHHHHHh----hhcCCC-chhHHHHHHHHHHhcCChHHHHHHHhcCC-------CC--Chh
Q 007519 334 TFSVLFGAAGATANIDLGRQIHCVLM----KTESES-DLILENCLISMYAKCGVIDNAYNIFSNMV-------SR--DLV 399 (600)
Q Consensus 334 ~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-------~~--~~~ 399 (600)
.|..|-..|.-.|+++.|...++.-. +.|-.. ....+..+.+++.-.|+++.|.+.|+... .. ...
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 34555555566788888887776322 233221 23456678888888899999988887653 22 234
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHc----C-CCCChhHHHHHHHHhcccCchHHHHHHHHHHHh
Q 007519 400 SWNSMVMGFSHHGLANETLKVFESMLES----G-THPNSVTFLGILSACSHAGLVSRGWELFNAMFD 461 (600)
Q Consensus 400 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 461 (600)
+.-.|.+.|.-..++++|+.++.+-... + ..-....+.+|..++...|..++|..+.+.-.+
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 5566777888888888888887764432 1 122346777888888888888888877665443
No 194
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.33 E-value=0.06 Score=48.64 Aligned_cols=55 Identities=11% Similarity=-0.014 Sum_probs=30.4
Q ss_pred HHHhcccCchHHHHHHHHHHHhhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHh
Q 007519 440 LSACSHAGLVSRGWELFNAMFDVYKIQP-GPEHYVSMINLLGRAGKIKEAEEFVLR 494 (600)
Q Consensus 440 ~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 494 (600)
..-|.+.|.+..|..-++.+.+.+.-.| .......++.+|...|..++|.++...
T Consensus 182 a~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~ 237 (243)
T PRK10866 182 AEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKI 237 (243)
T ss_pred HHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 3445556666666666666665533333 244555566666666666666555443
No 195
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.29 E-value=0.14 Score=51.95 Aligned_cols=113 Identities=10% Similarity=0.095 Sum_probs=80.2
Q ss_pred CCChhhHHHHHHHHHhcCChhhHHHHhcccCCCCchhHHHHHHHHHhcCChHHHHHHHhhCCCCChhhHHHHHHHHHhCC
Q 007519 232 NCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNE 311 (600)
Q Consensus 232 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g 311 (600)
.-...+.+--+.-+...|+-.+|.++-.++.-||-..|-.-+.++...+++++-+++-+.... +.-|.-...+|.+.|
T Consensus 681 ~f~dlSl~dTv~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~~~kweeLekfAkskks--PIGy~PFVe~c~~~~ 758 (829)
T KOG2280|consen 681 SFVDLSLHDTVTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALADIKKWEELEKFAKSKKS--PIGYLPFVEACLKQG 758 (829)
T ss_pred ccccCcHHHHHHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHhhhhHHHHHHHHhccCC--CCCchhHHHHHHhcc
Confidence 344455666666677788888888888888888888888888888888888877766555443 667777788888888
Q ss_pred ChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhcccchhhhHHHH
Q 007519 312 LFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIH 355 (600)
Q Consensus 312 ~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 355 (600)
+.++|...+.+... . .-...+|.+.|++.+|.+.-
T Consensus 759 n~~EA~KYiprv~~-----l----~ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 759 NKDEAKKYIPRVGG-----L----QEKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred cHHHHhhhhhccCC-----h----HHHHHHHHHhccHHHHHHHH
Confidence 88888877754321 1 14556677777776665543
No 196
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.28 E-value=0.00088 Score=46.76 Aligned_cols=60 Identities=27% Similarity=0.409 Sum_probs=38.5
Q ss_pred ccCchHHHHHHHHHHHhhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHhCC-CCCCHHHHHHH
Q 007519 445 HAGLVSRGWELFNAMFDVYKIQP-GPEHYVSMINLLGRAGKIKEAEEFVLRLP-FEPDHRIWGAL 507 (600)
Q Consensus 445 ~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l 507 (600)
..|++++|.++|+.+... .| +...+..++.+|.+.|++++|.++++++. ..|+...+..+
T Consensus 3 ~~~~~~~A~~~~~~~l~~---~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l 64 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQR---NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQL 64 (68)
T ss_dssp HTTHHHHHHHHHHHHHHH---TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHH
Confidence 456777777777777654 44 46666667777777777777777777764 55555444443
No 197
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.25 E-value=0.069 Score=50.06 Aligned_cols=265 Identities=12% Similarity=0.005 Sum_probs=126.0
Q ss_pred HHHHhcCChhHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHhcCChhhHHHHhcccC---CCCchhHHHHHHHHHhcCC
Q 007519 205 GGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVP---VRDEISWTSMIDGYLSVGQ 281 (600)
Q Consensus 205 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~ 281 (600)
..+.+..++..|+..+....+. .+.+..-|..-+..+...++++++.--.+.-. +..........+++...++
T Consensus 57 n~~yk~k~Y~nal~~yt~Ai~~----~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~ 132 (486)
T KOG0550|consen 57 NAFYKQKTYGNALKNYTFAIDM----CPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSD 132 (486)
T ss_pred chHHHHhhHHHHHHHHHHHHHh----CccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhHH
Confidence 3455666777777777777765 12223344444444555555555544333222 2223333334444444555
Q ss_pred hHHHHHHHhhCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCC-CCChhHHHHHHH-HHhcccchhhhHHHHHHHh
Q 007519 282 VSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGV-PPLNATFSVLFG-AAGATANIDLGRQIHCVLM 359 (600)
Q Consensus 282 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~ 359 (600)
..+|.+.++. ...+ ....++..++....... +|.-.++..+-. ++.-.++.+.|.++-..+.
T Consensus 133 ~i~A~~~~~~-----~~~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~il 196 (486)
T KOG0550|consen 133 LIEAEEKLKS-----KQAY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDIL 196 (486)
T ss_pred HHHHHHHhhh-----hhhh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHH
Confidence 5555544441 1111 11122222222222111 122223332222 3344555555555544444
Q ss_pred hhcCCCchhHHHHHHH--HHHhcCChHHHHHHHhcCCCCChh---------------hHHHHHHHHHhcCChHHHHHHHH
Q 007519 360 KTESESDLILENCLIS--MYAKCGVIDNAYNIFSNMVSRDLV---------------SWNSMVMGFSHHGLANETLKVFE 422 (600)
Q Consensus 360 ~~~~~~~~~~~~~l~~--~~~~~~~~~~A~~~~~~~~~~~~~---------------~~~~l~~~~~~~~~~~~a~~~~~ 422 (600)
+.... ..+..++. ++--.++.+.|...|++...-++. .|..=.+-..+.|++..|.+.|.
T Consensus 197 kld~~---n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yt 273 (486)
T KOG0550|consen 197 KLDAT---NAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYT 273 (486)
T ss_pred hcccc---hhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHH
Confidence 43221 11111121 122245556666666665522211 12222233456777788888877
Q ss_pred HHHHc---CCCCChhHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCCC-cchHHHHHHHHhhcCChHHHHHHHHhC
Q 007519 423 SMLES---GTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPG-PEHYVSMINLLGRAGKIKEAEEFVLRL 495 (600)
Q Consensus 423 ~m~~~---~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 495 (600)
+.... ++.|+...|.....+..+.|+..+|+.-.+.+.. ++|. ...+..-+.++...++|++|.+-+++.
T Consensus 274 eal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~---iD~syikall~ra~c~l~le~~e~AV~d~~~a 347 (486)
T KOG0550|consen 274 EALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK---IDSSYIKALLRRANCHLALEKWEEAVEDYEKA 347 (486)
T ss_pred HhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh---cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77642 2334445566666666777888887777666653 3442 333444445556667777777777664
No 198
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.22 E-value=0.044 Score=54.18 Aligned_cols=79 Identities=13% Similarity=0.134 Sum_probs=43.2
Q ss_pred HHHhcccchhhhHHHHHHHhhhcCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhhHH-------------HHHH
Q 007519 340 GAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWN-------------SMVM 406 (600)
Q Consensus 340 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-------------~l~~ 406 (600)
.-+.+...+..|-++|..+-.. ..+++.....+++.+|..+-++.++--..+|- -.-.
T Consensus 755 ~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~DrFeEAqk 825 (1081)
T KOG1538|consen 755 TYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAENDRFEEAQK 825 (1081)
T ss_pred HHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccccccccchHHHHhhhhhhHHHHHH
Confidence 3334444555555555544332 24666667777777777777766532211222 2234
Q ss_pred HHHhcCChHHHHHHHHHHHHc
Q 007519 407 GFSHHGLANETLKVFESMLES 427 (600)
Q Consensus 407 ~~~~~~~~~~a~~~~~~m~~~ 427 (600)
+|.+.|+-.+|..+++++...
T Consensus 826 AfhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 826 AFHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred HHHHhcchHHHHHHHHHhhhh
Confidence 556666667777777666543
No 199
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.21 E-value=0.0036 Score=48.84 Aligned_cols=82 Identities=22% Similarity=0.095 Sum_probs=38.9
Q ss_pred HHHHHhhcCChHHHHHHHHhCC---CCCC--HHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCC---CCCcHHHHhHHH
Q 007519 475 MINLLGRAGKIKEAEEFVLRLP---FEPD--HRIWGALLGACGFCEGNAEIAEHAAKRLLELDPL---NAPAHVVLCNIY 546 (600)
Q Consensus 475 l~~~~~~~g~~~~A~~~~~~~~---~~p~--~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~ 546 (600)
+..++-..|+.++|..++++.. .... ...+..+...+. ..|+.++|+.++++.....|+ +......++.++
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr-~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLR-NLGRYDEALALLEEALEEFPDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHH
Confidence 3444445555555555554432 1111 123333444444 555555555555555555554 333334444555
Q ss_pred HhhCCcHHHHH
Q 007519 547 AASGRHVEEHK 557 (600)
Q Consensus 547 ~~~g~~~~A~~ 557 (600)
...|+.++|.+
T Consensus 86 ~~~gr~~eAl~ 96 (120)
T PF12688_consen 86 YNLGRPKEALE 96 (120)
T ss_pred HHCCCHHHHHH
Confidence 55555555555
No 200
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.21 E-value=0.005 Score=46.17 Aligned_cols=79 Identities=10% Similarity=0.129 Sum_probs=63.8
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHCCC-CCChhHHHHHHHHHhccc--------chhhhHHHHHHHhhhcCCCchhHHH
Q 007519 301 TAMISGLVQNELFVEATYLFMEMRAHGV-PPLNATFSVLFGAAGATA--------NIDLGRQIHCVLMKTESESDLILEN 371 (600)
Q Consensus 301 ~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~~ 371 (600)
...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. ++-....+++.+...+++|+..+|+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 3456666777999999999999999999 899999999999876543 2345667888888888889988888
Q ss_pred HHHHHHHh
Q 007519 372 CLISMYAK 379 (600)
Q Consensus 372 ~l~~~~~~ 379 (600)
.++..+.+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 88877654
No 201
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.19 E-value=0.0051 Score=52.29 Aligned_cols=63 Identities=14% Similarity=0.172 Sum_probs=33.3
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--hhHHHHHHHHhcccCchHHHHHHHHHHHh
Q 007519 399 VSWNSMVMGFSHHGLANETLKVFESMLESGTHPN--SVTFLGILSACSHAGLVSRGWELFNAMFD 461 (600)
Q Consensus 399 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 461 (600)
..|..+...+...|++++|+..|++.......|. ..++..+..++...|++++|...++++..
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~ 100 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE 100 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3445555555556666666666666554321111 12445555555556666666666655553
No 202
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.14 E-value=0.0068 Score=56.23 Aligned_cols=126 Identities=17% Similarity=0.098 Sum_probs=60.3
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHH-HhcccchhhhHHHHHHHhhhcCCCchhHHHHHHHHH
Q 007519 299 AWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGA-AGATANIDLGRQIHCVLMKTESESDLILENCLISMY 377 (600)
Q Consensus 299 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 377 (600)
+|-.++....+.+..+.|..+|.+.++.+ ..+...|...... +...++.+.|..+|+...+. +..+...+...++.+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 45556666666666666666666665332 1122223222222 22234444556666554443 333444555555555
Q ss_pred HhcCChHHHHHHHhcCCC--C----ChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 007519 378 AKCGVIDNAYNIFSNMVS--R----DLVSWNSMVMGFSHHGLANETLKVFESMLE 426 (600)
Q Consensus 378 ~~~~~~~~A~~~~~~~~~--~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 426 (600)
.+.++.+.|+.+|++... + ....|...+..-.+.|+.+.+..+.+++.+
T Consensus 81 ~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 81 IKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 555555555555555541 1 123555555555555555555555555554
No 203
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.14 E-value=0.25 Score=46.98 Aligned_cols=132 Identities=13% Similarity=0.128 Sum_probs=87.5
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCChhHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCCCcc-hHHHH
Q 007519 398 LVSWNSMVMGFSHHGLANETLKVFESMLESG-THPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPE-HYVSM 475 (600)
Q Consensus 398 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~-~~~~l 475 (600)
..+|...++...+..-.+.|..+|-+..+.| +.++...+++++..++ .|+...|.++|+.-... -||.. -.+-.
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~---f~d~~~y~~ky 472 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK---FPDSTLYKEKY 472 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh---CCCchHHHHHH
Confidence 3456667777777777788888888888777 5566677777766554 56777778888766653 23332 33345
Q ss_pred HHHHhhcCChHHHHHHHHhCC--CCCC--HHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCC
Q 007519 476 INLLGRAGKIKEAEEFVLRLP--FEPD--HRIWGALLGACGFCEGNAEIAEHAAKRLLELDPL 534 (600)
Q Consensus 476 ~~~~~~~g~~~~A~~~~~~~~--~~p~--~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~ 534 (600)
+..+.+-++-+.|..+|+... +..+ ...|..++..-. .-|+...+..+-+++.++.|.
T Consensus 473 l~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs-~~G~lN~v~sLe~rf~e~~pQ 534 (660)
T COG5107 473 LLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYES-MVGSLNNVYSLEERFRELVPQ 534 (660)
T ss_pred HHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHH-hhcchHHHHhHHHHHHHHcCc
Confidence 556677777788888887542 1222 456666776666 778888787777777777773
No 204
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.10 E-value=0.062 Score=50.96 Aligned_cols=161 Identities=19% Similarity=0.173 Sum_probs=105.8
Q ss_pred HHHHHHHHhcCChHHHHHHHhcCCCC-------ChhhHHHHHHHHHh---cCChHHHHHHHHHHHHcCCCCChhHHHHHH
Q 007519 371 NCLISMYAKCGVIDNAYNIFSNMVSR-------DLVSWNSMVMGFSH---HGLANETLKVFESMLESGTHPNSVTFLGIL 440 (600)
Q Consensus 371 ~~l~~~~~~~~~~~~A~~~~~~~~~~-------~~~~~~~l~~~~~~---~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~ 440 (600)
-.++-.|-...+++...++.+.+... ...+-.....++-+ .|+.++|+.++..+......+++.+|..+.
T Consensus 145 ~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~G 224 (374)
T PF13281_consen 145 INLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLG 224 (374)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHH
Confidence 34555688888888888888888632 22233344556666 789999999999866666677778877776
Q ss_pred HHhc---------ccCchHHHHHHHHHHHhhcCCCCCcchHHHHHHHHhhcCCh----HHHHHHH---Hh-C------CC
Q 007519 441 SACS---------HAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKI----KEAEEFV---LR-L------PF 497 (600)
Q Consensus 441 ~~~~---------~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~----~~A~~~~---~~-~------~~ 497 (600)
+.|- .....++|+..|.+.- .+.|+...--.++..+.-.|.. .+..++. .. + ..
T Consensus 225 RIyKD~~~~s~~~d~~~ldkAi~~Y~kgF---e~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~ 301 (374)
T PF13281_consen 225 RIYKDLFLESNFTDRESLDKAIEWYRKGF---EIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEK 301 (374)
T ss_pred HHHHHHHHHcCccchHHHHHHHHHHHHHH---cCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccc
Confidence 6542 1234778888888765 4456644333444444444432 1222322 11 1 13
Q ss_pred CCCHHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCC
Q 007519 498 EPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLN 535 (600)
Q Consensus 498 ~p~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~ 535 (600)
..+...+..++.++. -.||.+.|.+.+++++++.|+.
T Consensus 302 ~~dYWd~ATl~Ea~v-L~~d~~ka~~a~e~~~~l~~~~ 338 (374)
T PF13281_consen 302 MQDYWDVATLLEASV-LAGDYEKAIQAAEKAFKLKPPA 338 (374)
T ss_pred cccHHHHHHHHHHHH-HcCCHHHHHHHHHHHhhcCCcc
Confidence 346667788888888 8999999999999999998843
No 205
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.08 E-value=0.079 Score=43.85 Aligned_cols=131 Identities=11% Similarity=0.093 Sum_probs=87.4
Q ss_pred CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCCCcchHHH
Q 007519 395 SRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVS 474 (600)
Q Consensus 395 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ 474 (600)
.|++..--.|..++...|++.+|...|++...--+.-|......+.++....+++..|...++.+.+...-.-++.....
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll 165 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL 165 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence 34555555677888888888888888888876444456667777778888888888888888888764211114666777
Q ss_pred HHHHHhhcCChHHHHHHHHhCC-CCCCHHHHHHHHHHHhhhhCCHHHHHHHHH
Q 007519 475 MINLLGRAGKIKEAEEFVLRLP-FEPDHRIWGALLGACGFCEGNAEIAEHAAK 526 (600)
Q Consensus 475 l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l~~~~~~~~g~~~~a~~~~~ 526 (600)
+.+.|...|+..+|+..|+... .-|+...--.....+. ++|+..++..-+.
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~~ypg~~ar~~Y~e~La-~qgr~~ea~aq~~ 217 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAISYYPGPQARIYYAEMLA-KQGRLREANAQYV 217 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHhCCCHHHHHHHHHHHH-HhcchhHHHHHHH
Confidence 8888888888888888887764 3344443333333444 6676555544333
No 206
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.08 E-value=0.0045 Score=56.25 Aligned_cols=98 Identities=11% Similarity=0.065 Sum_probs=46.5
Q ss_pred HHHHHHHhcccCchHHHHHHHHHHHhhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHhCC-CCCC----HHHHHHHHH
Q 007519 436 FLGILSACSHAGLVSRGWELFNAMFDVYKIQP-GPEHYVSMINLLGRAGKIKEAEEFVLRLP-FEPD----HRIWGALLG 509 (600)
Q Consensus 436 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~----~~~~~~l~~ 509 (600)
|...+......|++++|...|+.+.+.+.-.+ .+..+..++.+|...|++++|...|+.+. ..|+ ...+..+..
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~ 225 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV 225 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence 33333333444566666666666655421111 02344555555556666666655555542 1121 222333333
Q ss_pred HHhhhhCCHHHHHHHHHHHHhhCCC
Q 007519 510 ACGFCEGNAEIAEHAAKRLLELDPL 534 (600)
Q Consensus 510 ~~~~~~g~~~~a~~~~~~~~~~~p~ 534 (600)
.+. ..|+.+.|...++++++..|+
T Consensus 226 ~~~-~~g~~~~A~~~~~~vi~~yP~ 249 (263)
T PRK10803 226 IMQ-DKGDTAKAKAVYQQVIKKYPG 249 (263)
T ss_pred HHH-HcCCHHHHHHHHHHHHHHCcC
Confidence 344 555666666666665555553
No 207
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.06 E-value=0.013 Score=45.72 Aligned_cols=91 Identities=16% Similarity=0.250 Sum_probs=59.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCh--hHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCC-CcchHHHHHHHHh
Q 007519 404 MVMGFSHHGLANETLKVFESMLESGTHPNS--VTFLGILSACSHAGLVSRGWELFNAMFDVYKIQP-GPEHYVSMINLLG 480 (600)
Q Consensus 404 l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~ 480 (600)
...++-..|+.++|+.+|++....|..... ..+..+...+...|++++|..+++.....+.-.+ +......+..++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 455667778888888888888887765543 3455566777788888888888887776422111 1222333445667
Q ss_pred hcCChHHHHHHHHh
Q 007519 481 RAGKIKEAEEFVLR 494 (600)
Q Consensus 481 ~~g~~~~A~~~~~~ 494 (600)
..|+.++|.+.+-.
T Consensus 87 ~~gr~~eAl~~~l~ 100 (120)
T PF12688_consen 87 NLGRPKEALEWLLE 100 (120)
T ss_pred HCCCHHHHHHHHHH
Confidence 77888887776643
No 208
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.97 E-value=0.0082 Score=54.61 Aligned_cols=84 Identities=12% Similarity=-0.031 Sum_probs=44.8
Q ss_pred hhcCChHHHHHHHHhCC-CCCCH----HHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCC---CcHHHHhHHHHhhCC
Q 007519 480 GRAGKIKEAEEFVLRLP-FEPDH----RIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNA---PAHVVLCNIYAASGR 551 (600)
Q Consensus 480 ~~~g~~~~A~~~~~~~~-~~p~~----~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~ 551 (600)
.+.|++++|...|+.+. ..|+. ..+..+...+. ..|++++|+..|+++++..|+++ .++..++.++...|+
T Consensus 154 ~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~-~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~ 232 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNY-NKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGD 232 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCC
Confidence 44566666666665543 22322 23444444455 66666666666666666555443 333344555656666
Q ss_pred cHHHHHHHHHHhh
Q 007519 552 HVEEHKLRMDMGL 564 (600)
Q Consensus 552 ~~~A~~~~~~~~~ 564 (600)
+++|..+++.+.+
T Consensus 233 ~~~A~~~~~~vi~ 245 (263)
T PRK10803 233 TAKAKAVYQQVIK 245 (263)
T ss_pred HHHHHHHHHHHHH
Confidence 6666665554443
No 209
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=96.93 E-value=0.02 Score=55.45 Aligned_cols=95 Identities=14% Similarity=0.061 Sum_probs=46.5
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHHC--CCCCChhHHHHHHHHHhcccchhhhHHHHHHHhhhcCCCchhHHHHHHHH
Q 007519 299 AWTAMISGLVQNELFVEATYLFMEMRAH--GVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISM 376 (600)
Q Consensus 299 ~~~~li~~~~~~g~~~~a~~~~~~m~~~--g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 376 (600)
....++..+....+.+.+..++.+.+.. ....-..|..++++.|...|..+.+..++..-...|+=||..+++.|++.
T Consensus 68 dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lmd~ 147 (429)
T PF10037_consen 68 DLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLMDH 147 (429)
T ss_pred HHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHHHH
Confidence 3444444444444455555555544443 12222333445555555555555555555555555555555555555555
Q ss_pred HHhcCChHHHHHHHhcC
Q 007519 377 YAKCGVIDNAYNIFSNM 393 (600)
Q Consensus 377 ~~~~~~~~~A~~~~~~~ 393 (600)
+.+.|++..|.++...|
T Consensus 148 fl~~~~~~~A~~V~~~~ 164 (429)
T PF10037_consen 148 FLKKGNYKSAAKVATEM 164 (429)
T ss_pred HhhcccHHHHHHHHHHH
Confidence 55555555555554444
No 210
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.93 E-value=0.043 Score=48.02 Aligned_cols=140 Identities=14% Similarity=0.106 Sum_probs=99.2
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccCchHHHHHHHHHHHhhc----CCCCCcchHHHH
Q 007519 400 SWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVY----KIQPGPEHYVSM 475 (600)
Q Consensus 400 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~~~p~~~~~~~l 475 (600)
+-+.++..+...|.+.-.+..+++..+..-+.++.....+.+.-.+.|+.+.|...|++..+.. +...+..+....
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 3455667777788888888999999886545566677778888889999999999999665442 222233334445
Q ss_pred HHHHhhcCChHHHHHHHHhCC-CCCCHHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCCCcHH
Q 007519 476 INLLGRAGKIKEAEEFVLRLP-FEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHV 540 (600)
Q Consensus 476 ~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 540 (600)
...|.-++++.+|...+++++ ..|....++.--..|..-.|+..+|++..+.+++..| .+.+..
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P-~~~l~e 323 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDP-RHYLHE 323 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCC-ccchhh
Confidence 566778889999999999987 4444444433333333367999999999999999999 444433
No 211
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=96.87 E-value=0.013 Score=43.97 Aligned_cols=77 Identities=13% Similarity=0.218 Sum_probs=56.3
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCC-CCChhHHHHHHHHhcccC--------chHHHHHHHHHHHhhcCCCCCcchHHH
Q 007519 404 MVMGFSHHGLANETLKVFESMLESGT-HPNSVTFLGILSACSHAG--------LVSRGWELFNAMFDVYKIQPGPEHYVS 474 (600)
Q Consensus 404 l~~~~~~~~~~~~a~~~~~~m~~~~~-~p~~~~~~~l~~~~~~~g--------~~~~a~~~~~~~~~~~~~~p~~~~~~~ 474 (600)
.|..+...+++...-.+|+.++..|+ .|+..+|+.++.+.++.. ++-..+.+|+.+... +++|+..+|+.
T Consensus 31 ~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~-~lKP~~etYni 109 (120)
T PF08579_consen 31 NINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSN-KLKPNDETYNI 109 (120)
T ss_pred HHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHh-ccCCcHHHHHH
Confidence 45555666888888888888888888 788888888887655432 345567778888765 78888888888
Q ss_pred HHHHHhh
Q 007519 475 MINLLGR 481 (600)
Q Consensus 475 l~~~~~~ 481 (600)
++..+.+
T Consensus 110 vl~~Llk 116 (120)
T PF08579_consen 110 VLGSLLK 116 (120)
T ss_pred HHHHHHH
Confidence 7776654
No 212
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.84 E-value=0.0034 Score=44.47 Aligned_cols=63 Identities=25% Similarity=0.263 Sum_probs=43.0
Q ss_pred HHHHhhcCChHHHHHHHHhCC-CCCCH-HHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCCCcH
Q 007519 476 INLLGRAGKIKEAEEFVLRLP-FEPDH-RIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAH 539 (600)
Q Consensus 476 ~~~~~~~g~~~~A~~~~~~~~-~~p~~-~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 539 (600)
...|.+.+++++|.++++++. ..|+. ..+......+. ..|++++|...++++++..|+++...
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~-~~g~~~~A~~~l~~~l~~~p~~~~~~ 66 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLF-QLGRYEEALEDLERALELSPDDPDAR 66 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHH-HhccHHHHHHHHHHHHHHCCCcHHHH
Confidence 346777888888888887764 45544 34444555555 88888888888888888888554443
No 213
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.80 E-value=0.055 Score=47.51 Aligned_cols=165 Identities=15% Similarity=0.099 Sum_probs=91.1
Q ss_pred HHHHHHhcCChHHHHHHHhcCCC--C----ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh--hHHHHHHHHhc
Q 007519 373 LISMYAKCGVIDNAYNIFSNMVS--R----DLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNS--VTFLGILSACS 444 (600)
Q Consensus 373 l~~~~~~~~~~~~A~~~~~~~~~--~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~--~~~~~l~~~~~ 444 (600)
....+...|++.+|...|+.+.. | -....-.++.++.+.|++++|...++++.+. -|+. ..+...+.+.+
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~--yP~~~~~~~A~Y~~g~~ 88 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL--YPNSPKADYALYMLGLS 88 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH---TT-TTHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCcchhhHHHHHHHH
Confidence 34445566777777777777651 1 1234445667777888888888888887764 2332 12222222221
Q ss_pred c-------------cCchHHHHHHHHHHHhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 007519 445 H-------------AGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGAC 511 (600)
Q Consensus 445 ~-------------~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~ 511 (600)
. .+...+|...| ..++.-|-.+....+|.+.+..+...--. .-..+...+
T Consensus 89 ~~~~~~~~~~~~~D~~~~~~A~~~~----------------~~li~~yP~S~y~~~A~~~l~~l~~~la~-~e~~ia~~Y 151 (203)
T PF13525_consen 89 YYKQIPGILRSDRDQTSTRKAIEEF----------------EELIKRYPNSEYAEEAKKRLAELRNRLAE-HELYIARFY 151 (203)
T ss_dssp HHHHHHHHH-TT---HHHHHHHHHH----------------HHHHHH-TTSTTHHHHHHHHHHHHHHHHH-HHHHHHHHH
T ss_pred HHHhCccchhcccChHHHHHHHHHH----------------HHHHHHCcCchHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 1 11122333333 33444444555555665555444310001 111234456
Q ss_pred hhhhCCHHHHHHHHHHHHhhCCCCC---CcHHHHhHHHHhhCCcHHHHH
Q 007519 512 GFCEGNAEIAEHAAKRLLELDPLNA---PAHVVLCNIYAASGRHVEEHK 557 (600)
Q Consensus 512 ~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~ 557 (600)
. +.|.+..|+.-++.+++..|+.+ .+...++.+|.+.|..+.|..
T Consensus 152 ~-~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~~ 199 (203)
T PF13525_consen 152 Y-KRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAADT 199 (203)
T ss_dssp H-CTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred H-HcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHHH
Confidence 6 89999999999999999999654 446778888999999885543
No 214
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.78 E-value=0.0019 Score=40.20 Aligned_cols=41 Identities=34% Similarity=0.410 Sum_probs=35.1
Q ss_pred HHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCCCcHHHHhH
Q 007519 503 IWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCN 544 (600)
Q Consensus 503 ~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 544 (600)
++..+...+. ..|+.++|++.++++++..|+|+..+..++.
T Consensus 3 ~~~~la~~~~-~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 3 AWLALARAYR-RLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHH-HcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 5667777888 9999999999999999999999888877764
No 215
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.77 E-value=0.054 Score=46.38 Aligned_cols=117 Identities=16% Similarity=0.162 Sum_probs=76.3
Q ss_pred CCChhHHHHHHHHHh-----cccchhhhHHHHHHHhhhcCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHH
Q 007519 329 PPLNATFSVLFGAAG-----ATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNS 403 (600)
Q Consensus 329 ~p~~~~~~~l~~~~~-----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 403 (600)
.-+..+|..++..+. +.|.++-....+..|.+.|+.-|..+|+.|++.+=+ |.+- -..+|+ +
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ-----------~ 110 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQ-----------A 110 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHH-----------H
Confidence 445566666666554 346677777778888888888888888888887764 3321 111111 1
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccCch-HHHHHHHHHHH
Q 007519 404 MVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLV-SRGWELFNAMF 460 (600)
Q Consensus 404 l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~ 460 (600)
+..-| -.+.+-|++++++|...|+-||..++..++..+.+.+.. .+..++.-.|-
T Consensus 111 ~F~hy--p~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p~~K~~rmmYWmp 166 (228)
T PF06239_consen 111 EFMHY--PRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSHPMKKYRRMMYWMP 166 (228)
T ss_pred HhccC--cHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 11111 234567899999999999999999999999998776642 33334433333
No 216
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.76 E-value=0.0058 Score=58.47 Aligned_cols=97 Identities=14% Similarity=0.050 Sum_probs=66.7
Q ss_pred CcchHHHHHHHHhhcCChHHHHHHHHhC-CCCCCHH----HHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCCCcHHHH
Q 007519 468 GPEHYVSMINLLGRAGKIKEAEEFVLRL-PFEPDHR----IWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVL 542 (600)
Q Consensus 468 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~----~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 542 (600)
+...++.++.+|...|++++|+..|++. ...|+.. .|.++..++. ..|+.++|+..+++++++.+ + .|..+
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya-~LGr~dEAla~LrrALelsn--~-~f~~i 149 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHA-YREEGKKAADCLRTALRDYN--L-KFSTI 149 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhcc--h-hHHHH
Confidence 4677888888899999999999998884 4677643 4777888888 88999999999999888732 1 12111
Q ss_pred hH--HHHhhCCcHHHHHHHHHHhhcCCc
Q 007519 543 CN--IYAASGRHVEEHKLRMDMGLKGVR 568 (600)
Q Consensus 543 ~~--~~~~~g~~~~A~~~~~~~~~~~~~ 568 (600)
.. .+....+.++..++++.+.+.|.+
T Consensus 150 ~~DpdL~plR~~pef~eLlee~rk~G~~ 177 (453)
T PLN03098 150 LNDPDLAPFRASPEFKELQEEARKGGED 177 (453)
T ss_pred HhCcchhhhcccHHHHHHHHHHHHhCCc
Confidence 10 111233445666677777777764
No 217
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.75 E-value=0.81 Score=46.71 Aligned_cols=314 Identities=12% Similarity=0.104 Sum_probs=177.1
Q ss_pred HHHHHHHcCCChhHHHHHhhhcCCCC---hhhHHHHHHHHHhcCC---hHHHHHHhhcCCC--CCceeHHHHHHHHHHCC
Q 007519 47 AMLSGFLQNGRLSEARRLFEEMPERN---VVSWTAMICGLADAGR---VCEARKLFEEMPE--RNVVSWNSMVVGLIRNG 118 (600)
Q Consensus 47 ~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~ 118 (600)
.+++-+...+.+..|.++-+.+..|. ..+|.....-+.+.-+ -+.+..+-+++.. ....+|..+++.....|
T Consensus 442 ~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~~~~iSy~~iA~~Ay~~G 521 (829)
T KOG2280|consen 442 VVIDRLVDRHLYSVAIQVAKLLNLPESQGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKLTPGISYAAIARRAYQEG 521 (829)
T ss_pred hhhHHHHhcchhHHHHHHHHHhCCccccccHHHHHHHHHHHhccCccchHHHHHHHHHhcccCCCceeHHHHHHHHHhcC
Confidence 34555667788888888888877655 5666666666666632 2333334444444 45567888888888888
Q ss_pred ChhHHHHHhhcCCC--------CCcccHHHHHHHHHhcCCHhHHHHHHHhccc-CCchhHHHHHHHHHhcCChhHHHHHH
Q 007519 119 ELNEARKVFNSMPI--------KNVISWNAMIAGYVECCMMGEAIVLFEEMEE-RNVVTWTSMISGYCRAGEVEEGYCLF 189 (600)
Q Consensus 119 ~~~~a~~~~~~~~~--------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~ 189 (600)
+++-|..+++.=+. .+..-+...+.-+...||.+-...++-.+.+ -+...+. ....+.-.|..+|
T Consensus 522 R~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~------~~l~~~p~a~~lY 595 (829)
T KOG2280|consen 522 RFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSLF------MTLRNQPLALSLY 595 (829)
T ss_pred cHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHH------HHHHhchhhhHHH
Confidence 88888888776543 1223344444555555665555555544432 1111111 1111222233333
Q ss_pred ccCCC-CCcchHHHHHHHHHhcCChhHHHHHH--HHHHhhhc--CCCCCChhhHHHHHHHHHhcCChh---h-------H
Q 007519 190 RRMPR-KNVVSWTAMIGGFAWNGFHKESLLLF--IEMKGICD--NGNNCNVQSCNSMINGYIRFGRLE---E-------A 254 (600)
Q Consensus 190 ~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~--~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~---~-------a 254 (600)
....+ .|..+ +- .+.++++-..++..| +...+. + ++..|+.. ...+++.+..... + -
T Consensus 596 ~~~~r~~~~~~---l~-d~y~q~dn~~~~a~~~~q~~~~~-~~~~~r~~~lk---~~a~~~a~sk~~s~e~ka~ed~~kL 667 (829)
T KOG2280|consen 596 RQFMRHQDRAT---LY-DFYNQDDNHQALASFHLQASYAA-ETIEGRIPALK---TAANAFAKSKEKSFEAKALEDQMKL 667 (829)
T ss_pred HHHHHhhchhh---hh-hhhhcccchhhhhhhhhhhhhhh-hhhcccchhHH---HHHHHHhhhhhhhhHHHHHHHHHHH
Confidence 32221 11111 00 111122222221111 110010 1 12333332 3333344333211 1 1
Q ss_pred HHHhcccC-----CCCchhHHHHHHHHHhcCChHHHHHHHhhCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCC
Q 007519 255 QNLFDTVP-----VRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVP 329 (600)
Q Consensus 255 ~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 329 (600)
..+.+.+. .-...+.+.-+.-+...|+..+|.++-.+..-||-..|-.-+.+++..++|++-+++-+.+.
T Consensus 668 l~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~~~kweeLekfAkskk----- 742 (829)
T KOG2280|consen 668 LKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALADIKKWEELEKFAKSKK----- 742 (829)
T ss_pred HHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHhhhhHHHHHHHHhccC-----
Confidence 11111111 11233455556677889999999999999999999999999999999999988666554332
Q ss_pred CChhHHHHHHHHHhcccchhhhHHHHHHHhhhcCCCchhHHHHHHHHHHhcCChHHHHHH
Q 007519 330 PLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNI 389 (600)
Q Consensus 330 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 389 (600)
++..|.....+|.+.|+.++|..++.+.... .-.+.+|.+.|++.+|.++
T Consensus 743 -sPIGy~PFVe~c~~~~n~~EA~KYiprv~~l---------~ekv~ay~~~~~~~eAad~ 792 (829)
T KOG2280|consen 743 -SPIGYLPFVEACLKQGNKDEAKKYIPRVGGL---------QEKVKAYLRVGDVKEAADL 792 (829)
T ss_pred -CCCCchhHHHHHHhcccHHHHhhhhhccCCh---------HHHHHHHHHhccHHHHHHH
Confidence 3677888999999999999999988654321 1467888888988888654
No 218
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.69 E-value=0.16 Score=44.66 Aligned_cols=136 Identities=14% Similarity=0.092 Sum_probs=93.2
Q ss_pred hhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhcccchhhhHHHHHHHhhhcCCCchhHHHH-----
Q 007519 298 VAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENC----- 372 (600)
Q Consensus 298 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----- 372 (600)
...+.++..+.-.|.+.-.+..+++..+...+.++.....+.+...+.|+.+.|...++...+..-..+-...+.
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence 345566667777788888888888888876566677777788888888898888888887766543333333333
Q ss_pred HHHHHHhcCChHHHHHHHhcCC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhH
Q 007519 373 LISMYAKCGVIDNAYNIFSNMV---SRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVT 435 (600)
Q Consensus 373 l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~ 435 (600)
....|.-++++..|...+.+++ +.|+..-|.-.-++.-.|+..+|++.++.|... .|...+
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l 321 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYL 321 (366)
T ss_pred hhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccch
Confidence 2334566778888888887776 334555555555555667888888888888764 454443
No 219
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.61 E-value=0.081 Score=47.76 Aligned_cols=102 Identities=17% Similarity=0.122 Sum_probs=75.4
Q ss_pred CCChhHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCC-CcchHHHHHHHHhhcC---ChHHHHHHHHhCC-CCCCHH-H
Q 007519 430 HPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQP-GPEHYVSMINLLGRAG---KIKEAEEFVLRLP-FEPDHR-I 503 (600)
Q Consensus 430 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~-~~p~~~-~ 503 (600)
+-|...|..|..+|...|+++.|...|.+..+. .| ++..+..+++++..+. ...++..+++++. .+|+.. +
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL---~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~ira 229 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRL---AGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRA 229 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHH
Confidence 556678888888999999999999999888764 44 5667777777765433 4567888888864 566544 4
Q ss_pred HHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCC
Q 007519 504 WGALLGACGFCEGNAEIAEHAAKRLLELDPLN 535 (600)
Q Consensus 504 ~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~ 535 (600)
...+...+. ..|++.+|...++.+++..|.+
T Consensus 230 l~lLA~~af-e~g~~~~A~~~Wq~lL~~lp~~ 260 (287)
T COG4235 230 LSLLAFAAF-EQGDYAEAAAAWQMLLDLLPAD 260 (287)
T ss_pred HHHHHHHHH-HcccHHHHHHHHHHHHhcCCCC
Confidence 444444566 8899999999999999987733
No 220
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.54 E-value=0.017 Score=54.02 Aligned_cols=94 Identities=17% Similarity=0.083 Sum_probs=77.1
Q ss_pred chHHHHHHHHhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCCCcHHHHhHHHH
Q 007519 470 EHYVSMINLLGRAGKIKEAEEFVLRLP--FEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYA 547 (600)
Q Consensus 470 ~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 547 (600)
.+++.|+-+|.+.+++.+|++..++.. .+++...+---..++. ..|+++.|+..|+++++++|+|..+...|+..-.
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l-~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~ 336 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALL-ALGEYDLARDDFQKALKLEPSNKAARAELIKLKQ 336 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHH-hhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 367788999999999999999988864 3456667777788888 9999999999999999999999888888888877
Q ss_pred hhCCcHHHHH-HHHHHhh
Q 007519 548 ASGRHVEEHK-LRMDMGL 564 (600)
Q Consensus 548 ~~g~~~~A~~-~~~~~~~ 564 (600)
+.....+..+ +|.-|-.
T Consensus 337 k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 337 KIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 7777776644 7776643
No 221
>PRK11906 transcriptional regulator; Provisional
Probab=96.53 E-value=0.022 Score=54.71 Aligned_cols=156 Identities=14% Similarity=0.141 Sum_probs=98.4
Q ss_pred hhH--HHHHHHHHhc-----CChHHHHHHHHHHHHc-CCCCCh-hHHHHHHHHhcc---------cCchHHHHHHHHHHH
Q 007519 399 VSW--NSMVMGFSHH-----GLANETLKVFESMLES-GTHPNS-VTFLGILSACSH---------AGLVSRGWELFNAMF 460 (600)
Q Consensus 399 ~~~--~~l~~~~~~~-----~~~~~a~~~~~~m~~~-~~~p~~-~~~~~l~~~~~~---------~g~~~~a~~~~~~~~ 460 (600)
..| ..++.+.... ...+.|+.+|.+.... .+.|+. ..|..+..++.. ..+..+|.++-+++.
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 556 5556554442 2345788888888721 245654 344444443321 223456666666666
Q ss_pred hhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHhCC-CCCCHH-HHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCCC
Q 007519 461 DVYKIQP-GPEHYVSMINLLGRAGKIKEAEEFVLRLP-FEPDHR-IWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAP 537 (600)
Q Consensus 461 ~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~-~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 537 (600)
+ +.| |+.....++.++.-.|+++.|...|++.. ..|+.. +|......+. -.|+.++|.+.++++++++|....
T Consensus 332 e---ld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~-~~G~~~~a~~~i~~alrLsP~~~~ 407 (458)
T PRK11906 332 D---ITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHF-HNEKIEEARICIDKSLQLEPRRRK 407 (458)
T ss_pred h---cCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHH-HcCCHHHHHHHHHHHhccCchhhH
Confidence 4 456 67777788888888888999999998875 677654 4444444445 679999999999999999995544
Q ss_pred cHHHH--hHHHHhhCCcHHHHHHH
Q 007519 538 AHVVL--CNIYAASGRHVEEHKLR 559 (600)
Q Consensus 538 ~~~~l--~~~~~~~g~~~~A~~~~ 559 (600)
+-..- +..|+.. ..++|++++
T Consensus 408 ~~~~~~~~~~~~~~-~~~~~~~~~ 430 (458)
T PRK11906 408 AVVIKECVDMYVPN-PLKNNIKLY 430 (458)
T ss_pred HHHHHHHHHHHcCC-chhhhHHHH
Confidence 43332 3345444 457888844
No 222
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.49 E-value=0.087 Score=47.36 Aligned_cols=119 Identities=17% Similarity=0.194 Sum_probs=83.8
Q ss_pred HHhcccCchHHHHHHHHHHHhhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHH---HHHHhhhhC
Q 007519 441 SACSHAGLVSRGWELFNAMFDVYKIQP-GPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGAL---LGACGFCEG 516 (600)
Q Consensus 441 ~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l---~~~~~~~~g 516 (600)
......|++.+|...|..+... .| +......|+++|...|+.+.|..++..++.......+..+ +.... +..
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~---~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~-qaa 217 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQA---APENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLE-QAA 217 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHh---CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHH-HHh
Confidence 3456778888999988888764 34 4667778899999999999999999998844433333331 12222 222
Q ss_pred CHHHHHHHHHHHHhhCCCCCCcHHHHhHHHHhhCCcHHHHH-HHHHHhh
Q 007519 517 NAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHK-LRMDMGL 564 (600)
Q Consensus 517 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~-~~~~~~~ 564 (600)
+..+. ..+++-...+|+|...-..++..+...|+.++|.+ ++..|++
T Consensus 218 ~~~~~-~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~ 265 (304)
T COG3118 218 ATPEI-QDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRR 265 (304)
T ss_pred cCCCH-HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 22221 22445566889999999999999999999999999 7777765
No 223
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.40 E-value=0.033 Score=47.60 Aligned_cols=89 Identities=10% Similarity=0.078 Sum_probs=64.7
Q ss_pred CCChhhHHHHHHHHHh-----CCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhcc----------------cchhhhH
Q 007519 294 DRDAVAWTAMISGLVQ-----NELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGAT----------------ANIDLGR 352 (600)
Q Consensus 294 ~~~~~~~~~li~~~~~-----~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~----------------~~~~~a~ 352 (600)
.++..+|..++..|.+ .|..+=....++.|.+-|+.-|..+|+.|+..+-+. .+.+-+.
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i 123 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAI 123 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHH
Confidence 3566666666666654 466677777888888888888888888888887542 1234577
Q ss_pred HHHHHHhhhcCCCchhHHHHHHHHHHhcCC
Q 007519 353 QIHCVLMKTESESDLILENCLISMYAKCGV 382 (600)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 382 (600)
++++.|...|+-||..++..+++.+++.+.
T Consensus 124 ~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 124 DLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 788888888888888888888887776554
No 224
>PRK09687 putative lyase; Provisional
Probab=96.32 E-value=0.89 Score=42.11 Aligned_cols=227 Identities=11% Similarity=-0.031 Sum_probs=92.6
Q ss_pred CCceeHHHHHHHHHHCCChhHHHHHhhcCCCCCcccHHHHHHHHHhcCCH----hHHHHHHHhc--ccCCchhHHHHHHH
Q 007519 102 RNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMM----GEAIVLFEEM--EERNVVTWTSMISG 175 (600)
Q Consensus 102 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~A~~~~~~~--~~~~~~~~~~l~~~ 175 (600)
+|.......+..+...|..+....+.+-+..+|+..-...+.++...|+. .++...+..+ .+++..+....+.+
T Consensus 35 ~d~~vR~~A~~aL~~~~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~D~d~~VR~~A~~a 114 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGGQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALEDKSACVRASAINA 114 (280)
T ss_pred CCHHHHHHHHHHHHhcCcchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 44444444455555444433322222222234444444555555555542 2344444443 23444444444444
Q ss_pred HHhcCCh-----hHHHHHHcc-CCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHhcC
Q 007519 176 YCRAGEV-----EEGYCLFRR-MPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFG 249 (600)
Q Consensus 176 ~~~~g~~-----~~A~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 249 (600)
++..+.- ..+...+.. +..++..+-...+.++.+.++ ..++..+..+.. .+|...-...+.++.+.+
T Consensus 115 LG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~------d~~~~VR~~A~~aLg~~~ 187 (280)
T PRK09687 115 TGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVIND-EAAIPLLINLLK------DPNGDVRNWAAFALNSNK 187 (280)
T ss_pred HhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCC-HHHHHHHHHHhc------CCCHHHHHHHHHHHhcCC
Confidence 4443211 122222222 222344444444555555444 344444444443 233333333333333321
Q ss_pred -ChhhHHHHh-cccCCCCchhHHHHHHHHHhcCChHHHHHHHhhCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCC
Q 007519 250 -RLEEAQNLF-DTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHG 327 (600)
Q Consensus 250 -~~~~a~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 327 (600)
+...+...+ ..+..++..+....+.++.+.|+..-.-.+.+.+..++ .....+.++...|+. +|+..+..+.+.
T Consensus 188 ~~~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~~~av~~Li~~L~~~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~- 263 (280)
T PRK09687 188 YDNPDIREAFVAMLQDKNEEIRIEAIIGLALRKDKRVLSVLIKELKKGT--VGDLIIEAAGELGDK-TLLPVLDTLLYK- 263 (280)
T ss_pred CCCHHHHHHHHHHhcCCChHHHHHHHHHHHccCChhHHHHHHHHHcCCc--hHHHHHHHHHhcCCH-hHHHHHHHHHhh-
Confidence 112222222 22224445555555555555555322222223332222 223445555555553 455555555543
Q ss_pred CCCChhHHHHHHH
Q 007519 328 VPPLNATFSVLFG 340 (600)
Q Consensus 328 ~~p~~~~~~~l~~ 340 (600)
.||..+-...+.
T Consensus 264 -~~d~~v~~~a~~ 275 (280)
T PRK09687 264 -FDDNEIITKAID 275 (280)
T ss_pred -CCChhHHHHHHH
Confidence 234444433333
No 225
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.31 E-value=0.63 Score=40.85 Aligned_cols=50 Identities=16% Similarity=0.151 Sum_probs=27.6
Q ss_pred HHHHhcccCchHHHHHHHHHHHhhcCCCC-CcchHHHHHHHHhhcCChHHH
Q 007519 439 ILSACSHAGLVSRGWELFNAMFDVYKIQP-GPEHYVSMINLLGRAGKIKEA 488 (600)
Q Consensus 439 l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A 488 (600)
+...|.+.|.+..|..-++.+.+.+.-.+ .......++.+|.+.|..+.|
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 34456666777777777777666533222 134455666666666666543
No 226
>PRK09687 putative lyase; Provisional
Probab=96.28 E-value=0.94 Score=41.94 Aligned_cols=236 Identities=14% Similarity=0.029 Sum_probs=132.8
Q ss_pred HHHhccCCCCCcchHHHHHHHHHcCCChhHHHHHhhhcCCCChhhHHHHHHHHHhcCCh----HHHHHHhhcC--CCCCc
Q 007519 31 KALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRV----CEARKLFEEM--PERNV 104 (600)
Q Consensus 31 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~----~~A~~~~~~~--~~~~~ 104 (600)
..+++.+..+|.......+.++...|..+-...+..-+..+|+..-...+.++..-|+. .++...+..+ .+++.
T Consensus 26 ~~L~~~L~d~d~~vR~~A~~aL~~~~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~D~d~ 105 (280)
T PRK09687 26 DELFRLLDDHNSLKRISSIRVLQLRGGQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALEDKSA 105 (280)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcCcchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhcCCCH
Confidence 33444445567767777777777766544444444433346666666666667776653 4566666654 33666
Q ss_pred eeHHHHHHHHHHCCCh-----hHHHHHhhc-CCCCCcccHHHHHHHHHhcCCHhHHHHHHHhcccCCchhHHHHHHHHHh
Q 007519 105 VSWNSMVVGLIRNGEL-----NEARKVFNS-MPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCR 178 (600)
Q Consensus 105 ~~~~~l~~~~~~~~~~-----~~a~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~ 178 (600)
......+.++...+.. ..+...+.. +.+++..+-...+.++.+.++.+....+...+.++|..+...-+.++.+
T Consensus 106 ~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~~~ai~~L~~~L~d~~~~VR~~A~~aLg~ 185 (280)
T PRK09687 106 CVRASAINATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVINDEAAIPLLINLLKDPNGDVRNWAAFALNS 185 (280)
T ss_pred HHHHHHHHHHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCCHHHHHHHHHHhcCCCHHHHHHHHHHHhc
Confidence 6666666666555321 223343433 3346666667777777777765444444444445666666666666665
Q ss_pred cC-ChhHHHHHHc-cCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHhcCChhhHHH
Q 007519 179 AG-EVEEGYCLFR-RMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQN 256 (600)
Q Consensus 179 ~g-~~~~A~~~~~-~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 256 (600)
.+ +...+...+. .+..++..+-...+.++.+.|+ ..|+..+-...+. ++ .....+.++...|+. +|..
T Consensus 186 ~~~~~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~-~~av~~Li~~L~~------~~--~~~~a~~ALg~ig~~-~a~p 255 (280)
T PRK09687 186 NKYDNPDIREAFVAMLQDKNEEIRIEAIIGLALRKD-KRVLSVLIKELKK------GT--VGDLIIEAAGELGDK-TLLP 255 (280)
T ss_pred CCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHccCC-hhHHHHHHHHHcC------Cc--hHHHHHHHHHhcCCH-hHHH
Confidence 43 1334444433 3344666677777777777776 4555555555532 12 234566777777775 5666
Q ss_pred HhcccC--CCCchhHHHHHHHH
Q 007519 257 LFDTVP--VRDEISWTSMIDGY 276 (600)
Q Consensus 257 ~~~~~~--~~~~~~~~~l~~~~ 276 (600)
.+..+. .+|..+....+.++
T Consensus 256 ~L~~l~~~~~d~~v~~~a~~a~ 277 (280)
T PRK09687 256 VLDTLLYKFDDNEIITKAIDKL 277 (280)
T ss_pred HHHHHHhhCCChhHHHHHHHHH
Confidence 666554 34555555555444
No 227
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.23 E-value=0.0054 Score=44.15 Aligned_cols=59 Identities=19% Similarity=0.215 Sum_probs=30.1
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHhCC-----CC---CC-HHHHHHHHHHHhhhhCCHHHHHHHHHHHHh
Q 007519 471 HYVSMINLLGRAGKIKEAEEFVLRLP-----FE---PD-HRIWGALLGACGFCEGNAEIAEHAAKRLLE 530 (600)
Q Consensus 471 ~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~---p~-~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~ 530 (600)
+++.++..|...|++++|++.+++.. .. |+ ..++..+...+. ..|++++|++.++++++
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~-~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYY-RLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHH-HTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHh
Confidence 45555555666666666655554431 11 11 223444444555 66666666666666554
No 228
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.23 E-value=0.0057 Score=44.03 Aligned_cols=60 Identities=15% Similarity=0.054 Sum_probs=48.2
Q ss_pred HHHHHHHHHHhhhhCCHHHHHHHHHHHHhh----CCC---CCCcHHHHhHHHHhhCCcHHHHHHHHHH
Q 007519 502 RIWGALLGACGFCEGNAEIAEHAAKRLLEL----DPL---NAPAHVVLCNIYAASGRHVEEHKLRMDM 562 (600)
Q Consensus 502 ~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~----~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 562 (600)
.+++.+...+. ..|++++|+..+++++++ .++ ...++..++.++...|++++|.++++..
T Consensus 6 ~~~~~la~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~a 72 (78)
T PF13424_consen 6 NAYNNLARVYR-ELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKA 72 (78)
T ss_dssp HHHHHHHHHHH-HTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 46777888888 999999999999999973 222 2467889999999999999999977654
No 229
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.19 E-value=0.13 Score=41.16 Aligned_cols=50 Identities=14% Similarity=0.123 Sum_probs=25.1
Q ss_pred ccCchHHHHHHHHHHHhhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHh
Q 007519 445 HAGLVSRGWELFNAMFDVYKIQP-GPEHYVSMINLLGRAGKIKEAEEFVLR 494 (600)
Q Consensus 445 ~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 494 (600)
+.|++++|.+.|+.+...+...| .......|+.+|.+.|++++|...+++
T Consensus 22 ~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~r 72 (142)
T PF13512_consen 22 QKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDR 72 (142)
T ss_pred HhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 44555555555555555433333 233444455555555555555555544
No 230
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.14 E-value=0.015 Score=48.04 Aligned_cols=68 Identities=28% Similarity=0.279 Sum_probs=51.1
Q ss_pred HHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCCCcHHHHhHHHHhhCCcHHHHHHHHHHh-----hcCCccCC
Q 007519 503 IWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMG-----LKGVRKVP 571 (600)
Q Consensus 503 ~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~ 571 (600)
.+..++..+. ..|+++.|+..+++++..+|-+...|..++.+|...|+..+|.+.++.++ +-|+.|.|
T Consensus 64 ~~~~l~~~~~-~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~ 136 (146)
T PF03704_consen 64 ALERLAEALL-EAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSP 136 (146)
T ss_dssp HHHHHHHHHH-HTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----H
T ss_pred HHHHHHHHHH-hccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCH
Confidence 4445556666 88999999999999999999999999999999999999999999777664 35666654
No 231
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=96.09 E-value=2.3 Score=44.72 Aligned_cols=49 Identities=16% Similarity=0.272 Sum_probs=29.2
Q ss_pred hCCHHHHHHHHHHHHhh---CCCCCCcHH------HHhHHHHhhCCcHHHHHHHHHHh
Q 007519 515 EGNAEIAEHAAKRLLEL---DPLNAPAHV------VLCNIYAASGRHVEEHKLRMDMG 563 (600)
Q Consensus 515 ~g~~~~a~~~~~~~~~~---~p~~~~~~~------~l~~~~~~~g~~~~A~~~~~~~~ 563 (600)
.|+.++.......+..+ .|+...... .+...+...|+.++|..+..+..
T Consensus 547 ~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~ 604 (608)
T PF10345_consen 547 EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLD 604 (608)
T ss_pred cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence 57776655555555442 233333222 34455777899999998776654
No 232
>PRK11906 transcriptional regulator; Provisional
Probab=96.02 E-value=0.3 Score=47.31 Aligned_cols=110 Identities=14% Similarity=0.052 Sum_probs=54.4
Q ss_pred hHHHHHHHHHHHhhcCCCCC-cchHHHHHHHHhh---------cCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHhhhhC
Q 007519 449 VSRGWELFNAMFDVYKIQPG-PEHYVSMINLLGR---------AGKIKEAEEFVLRLP-FEP-DHRIWGALLGACGFCEG 516 (600)
Q Consensus 449 ~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~---------~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~g 516 (600)
.+.|..+|.++.....++|+ ...|..+..++.. .....+|.++.++.. ..| |+.....+..+.. ..|
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~-~~~ 352 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITG-LSG 352 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-hhc
Confidence 44555566666533344553 4444444433321 112334444444432 333 3333333333333 445
Q ss_pred CHHHHHHHHHHHHhhCCCCCCcHHHHhHHHHhhCCcHHHHHHH
Q 007519 517 NAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLR 559 (600)
Q Consensus 517 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 559 (600)
+.+.|...|+++..++|+.+.++...++.+.-.|+.++|.+..
T Consensus 353 ~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i 395 (458)
T PRK11906 353 QAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICI 395 (458)
T ss_pred chhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 5666666666666666666666666666666666666666633
No 233
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.00 E-value=0.023 Score=53.24 Aligned_cols=88 Identities=20% Similarity=-0.011 Sum_probs=67.8
Q ss_pred HHHHhhcCChHHHHHHHHhCC-----------------CCCCHHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCCCc
Q 007519 476 INLLGRAGKIKEAEEFVLRLP-----------------FEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPA 538 (600)
Q Consensus 476 ~~~~~~~g~~~~A~~~~~~~~-----------------~~p~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 538 (600)
+..|.+.|++..|..-|+++. ......+++++..++. +.+++..|++...+.++++|+|...
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~l-Kl~~~~~Ai~~c~kvLe~~~~N~KA 293 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYL-KLKEYKEAIESCNKVLELDPNNVKA 293 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHH-hhhhHHHHHHHHHHHHhcCCCchhH
Confidence 344556666666665555531 1122445666777777 9999999999999999999999999
Q ss_pred HHHHhHHHHhhCCcHHHHHHHHHHhh
Q 007519 539 HVVLCNIYAASGRHVEEHKLRMDMGL 564 (600)
Q Consensus 539 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 564 (600)
...-+.+|...|+++.|+..++.+.+
T Consensus 294 LyRrG~A~l~~~e~~~A~~df~ka~k 319 (397)
T KOG0543|consen 294 LYRRGQALLALGEYDLARDDFQKALK 319 (397)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 99999999999999999997766554
No 234
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=95.99 E-value=2 Score=43.00 Aligned_cols=181 Identities=13% Similarity=0.072 Sum_probs=121.1
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHhcCCCC---ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHH
Q 007519 366 DLILENCLISMYAKCGVIDNAYNIFSNMVSR---DLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSA 442 (600)
Q Consensus 366 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 442 (600)
+...|...+..-.+.|+.+.+.-.|++..-| =...|-..+.-....|+.+-|..++....+-.++-.+.+-..-..-
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f 375 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF 375 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH
Confidence 4566777778888899999999999888743 2345666666666669888888888777665433333322222233
Q ss_pred hcccCchHHHHHHHHHHHhhcCCCCC-cchHHHHHHHHhhcCChHHHH---HHHHhCC-CCCCHHHHHHH----HH-HHh
Q 007519 443 CSHAGLVSRGWELFNAMFDVYKIQPG-PEHYVSMINLLGRAGKIKEAE---EFVLRLP-FEPDHRIWGAL----LG-ACG 512 (600)
Q Consensus 443 ~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~---~~~~~~~-~~p~~~~~~~l----~~-~~~ 512 (600)
+-..|+++.|..+++.+... . |+ ...-..-+....+.|..+.+. +++.... ..-+......+ .. .+.
T Consensus 376 ~e~~~n~~~A~~~lq~i~~e--~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~ 452 (577)
T KOG1258|consen 376 EESNGNFDDAKVILQRIESE--Y-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYK 452 (577)
T ss_pred HHhhccHHHHHHHHHHHHhh--C-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHH
Confidence 45678999999999999875 3 65 333333455567888888887 5554442 22222222222 22 123
Q ss_pred hhhCCHHHHHHHHHHHHhhCCCCCCcHHHHhHHHHhhC
Q 007519 513 FCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASG 550 (600)
Q Consensus 513 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 550 (600)
-.++.+.|..++.++.+..|++-..|..++......+
T Consensus 453 -i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 453 -IREDADLARIILLEANDILPDCKVLYLELIRFELIQP 489 (577)
T ss_pred -HhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCC
Confidence 4588999999999999999988888888888877665
No 235
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.98 E-value=2.5 Score=44.05 Aligned_cols=54 Identities=9% Similarity=0.161 Sum_probs=41.9
Q ss_pred HHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 007519 372 CLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESML 425 (600)
Q Consensus 372 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 425 (600)
-++..+....+.+.+..+.+...+.++..|..++..+++.+..+...+...+..
T Consensus 710 dl~~~~~q~~d~E~~it~~~~~g~~~p~l~~~~L~yF~~~~~i~~~~~~v~~vl 763 (933)
T KOG2114|consen 710 DLMLYFQQISDPETVITLCERLGKEDPSLWLHALKYFVSEESIEDCYEIVYKVL 763 (933)
T ss_pred HHHHHHHHhhChHHHHHHHHHhCccChHHHHHHHHHHhhhcchhhHHHHHHHHH
Confidence 456667778888888888888888888899999999999887766665555443
No 236
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.92 E-value=0.042 Score=52.80 Aligned_cols=62 Identities=13% Similarity=0.150 Sum_probs=47.1
Q ss_pred ChhHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCCCc----chHHHHHHHHhhcCChHHHHHHHHhCC
Q 007519 432 NSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGP----EHYVSMINLLGRAGKIKEAEEFVLRLP 496 (600)
Q Consensus 432 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~ 496 (600)
+...++.+..+|...|++++|...|++.++ +.|+. ..|..++.+|...|+.++|++.+++..
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALe---L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrAL 139 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALE---LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTAL 139 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 345677777888888888888888888775 36653 347888888888888888888887764
No 237
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=95.87 E-value=0.4 Score=45.68 Aligned_cols=31 Identities=10% Similarity=0.079 Sum_probs=24.8
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 007519 397 DLVSWNSMVMGFSHHGLANETLKVFESMLES 427 (600)
Q Consensus 397 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 427 (600)
+-..+.+++.+..-.|++++|.+.+++|...
T Consensus 304 dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 304 DYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 4445667788888899999999999998875
No 238
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=95.76 E-value=1.7 Score=40.44 Aligned_cols=123 Identities=10% Similarity=0.027 Sum_probs=55.6
Q ss_pred hCC-ChhHHHHHHHHHHHC--------CCCCCh-----hHHHHHHHHHhcccchhh---hHHHHHHHhhhcCCCchhHHH
Q 007519 309 QNE-LFVEATYLFMEMRAH--------GVPPLN-----ATFSVLFGAAGATANIDL---GRQIHCVLMKTESESDLILEN 371 (600)
Q Consensus 309 ~~g-~~~~a~~~~~~m~~~--------g~~p~~-----~~~~~l~~~~~~~~~~~~---a~~~~~~~~~~~~~~~~~~~~ 371 (600)
..+ +++.|..++++..+. ...|+. .++..++.++...+..+. |..+++.+.+ .....+.++-
T Consensus 47 ~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~-e~~~~~~~~~ 125 (278)
T PF08631_consen 47 SKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLES-EYGNKPEVFL 125 (278)
T ss_pred HcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHH-hCCCCcHHHH
Confidence 344 666666666554332 122332 244455555555554433 3334333322 2222334444
Q ss_pred HHHHHHHhcCChHHHHHHHhcCCC-C--ChhhHHHHHHHH---HhcCChHHHHHHHHHHHHcCCCCCh
Q 007519 372 CLISMYAKCGVIDNAYNIFSNMVS-R--DLVSWNSMVMGF---SHHGLANETLKVFESMLESGTHPNS 433 (600)
Q Consensus 372 ~l~~~~~~~~~~~~A~~~~~~~~~-~--~~~~~~~l~~~~---~~~~~~~~a~~~~~~m~~~~~~p~~ 433 (600)
.-++.+.+.++.+.+.+++.+|.. . ....+..++..+ ... ....+...+..+....+.|..
T Consensus 126 L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~i~~l~~~-~~~~a~~~ld~~l~~r~~~~~ 192 (278)
T PF08631_consen 126 LKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHHIKQLAEK-SPELAAFCLDYLLLNRFKSSE 192 (278)
T ss_pred HHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHHHHHHHHhh-CcHHHHHHHHHHHHHHhCCCh
Confidence 445555556666666666666651 1 223344433333 222 233444555544444344443
No 239
>PRK15331 chaperone protein SicA; Provisional
Probab=95.65 E-value=0.28 Score=40.26 Aligned_cols=91 Identities=12% Similarity=0.103 Sum_probs=54.3
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCCCcchHHHHHHHHhhcCChH
Q 007519 407 GFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIK 486 (600)
Q Consensus 407 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 486 (600)
-+-..|++++|..+|+-+.-.+ .-+..-+..|..++-..+++++|...|..+... . .-|+..+-..+..|...|+.+
T Consensus 46 ~~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l-~-~~dp~p~f~agqC~l~l~~~~ 122 (165)
T PRK15331 46 EFYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTL-L-KNDYRPVFFTGQCQLLMRKAA 122 (165)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-c-cCCCCccchHHHHHHHhCCHH
Confidence 3456677777777777666532 223333444555556667777777777766542 1 124455555677777777777
Q ss_pred HHHHHHHhCCCCCC
Q 007519 487 EAEEFVLRLPFEPD 500 (600)
Q Consensus 487 ~A~~~~~~~~~~p~ 500 (600)
.|++.|......|.
T Consensus 123 ~A~~~f~~a~~~~~ 136 (165)
T PRK15331 123 KARQCFELVNERTE 136 (165)
T ss_pred HHHHHHHHHHhCcc
Confidence 77777766554444
No 240
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.59 E-value=0.2 Score=40.08 Aligned_cols=82 Identities=20% Similarity=0.127 Sum_probs=58.8
Q ss_pred cchHHHHHHHHhhcCChHHHHHHHHhCC----CCC-CHHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCCCc-HH--
Q 007519 469 PEHYVSMINLLGRAGKIKEAEEFVLRLP----FEP-DHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPA-HV-- 540 (600)
Q Consensus 469 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p-~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~-~~-- 540 (600)
+..+..-+....+.|++++|.+.|+.+. ..| ....-..++.++. +.|+++.|+..+++.+++.|.++.+ |.
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy-~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y 88 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYY-KQGDYEEAIAAYDRFIRLHPTHPNVDYAYY 88 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHH-HccCHHHHHHHHHHHHHhCCCCCCccHHHH
Confidence 3344445566679999999999998874 223 2345566777888 9999999999999999999988754 33
Q ss_pred HHhHHHHhhCC
Q 007519 541 VLCNIYAASGR 551 (600)
Q Consensus 541 ~l~~~~~~~g~ 551 (600)
..+.++.+...
T Consensus 89 ~~gL~~~~~~~ 99 (142)
T PF13512_consen 89 MRGLSYYEQDE 99 (142)
T ss_pred HHHHHHHHHhh
Confidence 33444444443
No 241
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.58 E-value=0.72 Score=40.30 Aligned_cols=87 Identities=18% Similarity=0.097 Sum_probs=46.9
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHhCC-------CCCCH-HHHHHHHHHHhhhhCCHHHHHHHHHHHHh----hCCCCCCc
Q 007519 471 HYVSMINLLGRAGKIKEAEEFVLRLP-------FEPDH-RIWGALLGACGFCEGNAEIAEHAAKRLLE----LDPLNAPA 538 (600)
Q Consensus 471 ~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~p~~-~~~~~l~~~~~~~~g~~~~a~~~~~~~~~----~~p~~~~~ 538 (600)
.+..+...|++..++++|-..+.+-. .-|+. ..+...+-.+. ...|+..|...++.--. ..|++..+
T Consensus 152 l~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L-~~~Dyv~aekc~r~~~qip~f~~sed~r~ 230 (308)
T KOG1585|consen 152 LYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYL-YAHDYVQAEKCYRDCSQIPAFLKSEDSRS 230 (308)
T ss_pred HHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHh-hHHHHHHHHHHhcchhcCccccChHHHHH
Confidence 34445556667777777666554432 11221 12333333344 45677777777766444 34555666
Q ss_pred HHHHhHHHHhhCCcHHHHHHH
Q 007519 539 HVVLCNIYAASGRHVEEHKLR 559 (600)
Q Consensus 539 ~~~l~~~~~~~g~~~~A~~~~ 559 (600)
...|+.+| ..|+.+++..+.
T Consensus 231 lenLL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 231 LENLLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred HHHHHHHh-ccCCHHHHHHHH
Confidence 66666655 456666665543
No 242
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.55 E-value=0.094 Score=46.72 Aligned_cols=89 Identities=20% Similarity=0.223 Sum_probs=39.8
Q ss_pred ccCchHHHHHHHHHHHhhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHhC----CCCCCH-HHHHHHHHHHhhhhCCH
Q 007519 445 HAGLVSRGWELFNAMFDVYKIQP-GPEHYVSMINLLGRAGKIKEAEEFVLRL----PFEPDH-RIWGALLGACGFCEGNA 518 (600)
Q Consensus 445 ~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~~-~~~~~l~~~~~~~~g~~ 518 (600)
..|++..|...|...++.+.-.+ .+..+..|++.+...|++++|...|..+ +..|.. ..+.-+..+.. ..|+.
T Consensus 153 ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~-~l~~~ 231 (262)
T COG1729 153 KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLG-RLGNT 231 (262)
T ss_pred HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHH-HhcCH
Confidence 34445555555555554322111 2334444555555555555555554333 222222 22333333333 45555
Q ss_pred HHHHHHHHHHHhhCCC
Q 007519 519 EIAEHAAKRLLELDPL 534 (600)
Q Consensus 519 ~~a~~~~~~~~~~~p~ 534 (600)
++|...++++++..|+
T Consensus 232 d~A~atl~qv~k~YP~ 247 (262)
T COG1729 232 DEACATLQQVIKRYPG 247 (262)
T ss_pred HHHHHHHHHHHHHCCC
Confidence 5555555555555553
No 243
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.52 E-value=0.13 Score=39.78 Aligned_cols=82 Identities=20% Similarity=0.124 Sum_probs=38.2
Q ss_pred HHhhcCChHHHHHHHHhCC-CC-CCHHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCC----CcHHHHhHHHHhhCC
Q 007519 478 LLGRAGKIKEAEEFVLRLP-FE-PDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNA----PAHVVLCNIYAASGR 551 (600)
Q Consensus 478 ~~~~~g~~~~A~~~~~~~~-~~-p~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~----~~~~~l~~~~~~~g~ 551 (600)
++...|+.+.|++.|.+.. +. ...+.||.-..++. -+|+.++|+.-+++++++..+.. ..|..-+..|...|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~R-Lq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALR-LQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHH-HcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 3444555555555554432 22 23444555555555 55555555555555555432221 223344444555555
Q ss_pred cHHHHHHHH
Q 007519 552 HVEEHKLRM 560 (600)
Q Consensus 552 ~~~A~~~~~ 560 (600)
-+.|..=|+
T Consensus 131 dd~AR~DFe 139 (175)
T KOG4555|consen 131 DDAARADFE 139 (175)
T ss_pred hHHHHHhHH
Confidence 555554333
No 244
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.50 E-value=0.11 Score=42.89 Aligned_cols=55 Identities=11% Similarity=0.199 Sum_probs=25.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccCchHHHHHHHHHH
Q 007519 404 MVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAM 459 (600)
Q Consensus 404 l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 459 (600)
++..+...|++++|..+++.+.... +-+...+..++.++...|+...|.+.|+++
T Consensus 68 l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~ 122 (146)
T PF03704_consen 68 LAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERY 122 (146)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 3344444555555555555554431 334444555555555555555555554443
No 245
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.46 E-value=0.15 Score=40.32 Aligned_cols=48 Identities=21% Similarity=0.375 Sum_probs=24.3
Q ss_pred CCCCCcchHHHHHHHHhhcCChHHHHHHHHhC----CCCCCHHHHHHHHHHH
Q 007519 464 KIQPGPEHYVSMINLLGRAGKIKEAEEFVLRL----PFEPDHRIWGALLGAC 511 (600)
Q Consensus 464 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~~~~~~~l~~~~ 511 (600)
...|+..+..+++.+|+..|++..|+++++.. +++-+...|..++..+
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 34455555555555555555555555555443 2333345555555543
No 246
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=95.41 E-value=0.95 Score=38.81 Aligned_cols=163 Identities=17% Similarity=0.113 Sum_probs=95.1
Q ss_pred CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCCCcchHH
Q 007519 395 SRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPN-SVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYV 473 (600)
Q Consensus 395 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~ 473 (600)
+.-+.+||-+.--+...|+++.|.+.|+...+. .|. ..+...-.-++...|++..|.+-+...-+...-+|-...|.
T Consensus 96 P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~EL--Dp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWL 173 (297)
T COG4785 96 PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL--DPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWL 173 (297)
T ss_pred CCcHHHHHHHHHHHHhcccchHHHHHhhhHhcc--CCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHH
Confidence 344678888888899999999999999998875 333 22222222334567888888876665544322222222232
Q ss_pred HHHHHHhhcCChHHHHHHH-HhCCCCCCHHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCC-------CCcHHHHhHH
Q 007519 474 SMINLLGRAGKIKEAEEFV-LRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLN-------APAHVVLCNI 545 (600)
Q Consensus 474 ~l~~~~~~~g~~~~A~~~~-~~~~~~p~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~-------~~~~~~l~~~ 545 (600)
.+. ...-+..+|..-+ ++.. ..+..-|...+..+. .|.+. -+.+++++.+...++ ..+|..|+.-
T Consensus 174 Yl~---E~k~dP~~A~tnL~qR~~-~~d~e~WG~~iV~~y--LgkiS-~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~ 246 (297)
T COG4785 174 YLN---EQKLDPKQAKTNLKQRAE-KSDKEQWGWNIVEFY--LGKIS-EETLMERLKADATDNTSLAEHLTETYFYLGKY 246 (297)
T ss_pred HHH---HhhCCHHHHHHHHHHHHH-hccHhhhhHHHHHHH--Hhhcc-HHHHHHHHHhhccchHHHHHHHHHHHHHHHHH
Confidence 222 2334667776554 3333 334444444443332 23321 123344444433322 3678889999
Q ss_pred HHhhCCcHHHHHHHHHHhhcC
Q 007519 546 YAASGRHVEEHKLRMDMGLKG 566 (600)
Q Consensus 546 ~~~~g~~~~A~~~~~~~~~~~ 566 (600)
+...|+.++|..+++.....+
T Consensus 247 ~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 247 YLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred HhccccHHHHHHHHHHHHHHh
Confidence 999999999999887665443
No 247
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=95.35 E-value=0.038 Score=31.88 Aligned_cols=32 Identities=34% Similarity=0.199 Sum_probs=25.9
Q ss_pred HHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCC
Q 007519 502 RIWGALLGACGFCEGNAEIAEHAAKRLLELDPL 534 (600)
Q Consensus 502 ~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~ 534 (600)
.+|..+...+. ..|++++|+..++++++++|+
T Consensus 2 ~~~~~~g~~~~-~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYF-QLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHH-HTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHH-HhCCchHHHHHHHHHHHHCcC
Confidence 45677777788 899999999999999999985
No 248
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=95.31 E-value=0.056 Score=31.09 Aligned_cols=32 Identities=41% Similarity=0.320 Sum_probs=24.6
Q ss_pred HHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCC
Q 007519 503 IWGALLGACGFCEGNAEIAEHAAKRLLELDPLN 535 (600)
Q Consensus 503 ~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~ 535 (600)
.|..+...+. ..|++++|++.++++++++|+|
T Consensus 3 ~~~~lg~~~~-~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 3 AWYYLGQAYY-QLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHH-HTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHH-HhCCHHHHHHHHHHHHHHCcCC
Confidence 4556666677 8899999999999999998854
No 249
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=95.30 E-value=3 Score=40.40 Aligned_cols=150 Identities=9% Similarity=0.003 Sum_probs=80.5
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC---ChhHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCC--Ccc
Q 007519 396 RDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHP---NSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQP--GPE 470 (600)
Q Consensus 396 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p--~~~ 470 (600)
....+|..++..+.+.|+++.|...+..+...+..+ .+.....-.......|+..+|...++..... .+.. +..
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~-~~~~~~~~~ 222 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC-RLSKNIDSI 222 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH-Hhhhccccc
Confidence 345567777888888888888888888877643221 2233333445556677788888877777652 1111 111
Q ss_pred hHHHHHHHHhhcCChHHHHHH-HHhCCCCCCHHHHHHHHHHHhhhh------CCHHHHHHHHHHHHhhCCCCCCcHHHHh
Q 007519 471 HYVSMINLLGRAGKIKEAEEF-VLRLPFEPDHRIWGALLGACGFCE------GNAEIAEHAAKRLLELDPLNAPAHVVLC 543 (600)
Q Consensus 471 ~~~~l~~~~~~~g~~~~A~~~-~~~~~~~p~~~~~~~l~~~~~~~~------g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 543 (600)
....+...+.. ..+..... ........-...+..+...+. .. ++.+++...|+++.++.|.....+..++
T Consensus 223 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a 299 (352)
T PF02259_consen 223 SNAELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLD-ELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWA 299 (352)
T ss_pred cHHHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHH-hhccccccccHHHHHHHHHHHHHhChhHHHHHHHHH
Confidence 11111111100 00000000 000000001122223333333 33 7888999999999999998888888888
Q ss_pred HHHHhh
Q 007519 544 NIYAAS 549 (600)
Q Consensus 544 ~~~~~~ 549 (600)
..+.+.
T Consensus 300 ~~~~~~ 305 (352)
T PF02259_consen 300 LFNDKL 305 (352)
T ss_pred HHHHHH
Confidence 877654
No 250
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.30 E-value=0.18 Score=46.45 Aligned_cols=124 Identities=13% Similarity=0.083 Sum_probs=72.6
Q ss_pred HHHHHhcccCchHHHHHHHHHHHhhcCC--CC--CcchHHHHHHHHhhcCChHHHHHHHHhC-------CCCCCH-----
Q 007519 438 GILSACSHAGLVSRGWELFNAMFDVYKI--QP--GPEHYVSMINLLGRAGKIKEAEEFVLRL-------PFEPDH----- 501 (600)
Q Consensus 438 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~~----- 501 (600)
.+..++...+.++++++.|+.+.+--.- +| ...++..|...|.+..++++|.-+..+. .+..-.
T Consensus 127 ~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~ 206 (518)
T KOG1941|consen 127 SMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRA 206 (518)
T ss_pred hHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHH
Confidence 3445566666777777777776542111 11 2456777888888888888776554443 211111
Q ss_pred HHHHHHHHHHhhhhCCHHHHHHHHHHHHhh--CCCCC----CcHHHHhHHHHhhCCcHHHHH-HHHHH
Q 007519 502 RIWGALLGACGFCEGNAEIAEHAAKRLLEL--DPLNA----PAHVVLCNIYAASGRHVEEHK-LRMDM 562 (600)
Q Consensus 502 ~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~--~p~~~----~~~~~l~~~~~~~g~~~~A~~-~~~~~ 562 (600)
.....+..++. ..|....|.+..+++.++ .-.|. .....++++|...|+.+.|+. +-+.|
T Consensus 207 ~~lyhmaValR-~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 207 MSLYHMAVALR-LLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHH-HhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 12222334455 777777777777777662 22233 334467777888888888877 44443
No 251
>PRK11619 lytic murein transglycosylase; Provisional
Probab=95.25 E-value=4.8 Score=42.35 Aligned_cols=321 Identities=9% Similarity=-0.035 Sum_probs=154.1
Q ss_pred HHhcCChhHHHHHHccCCCCCcchHHHHHHHHHh--cCChhHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHhcCChhh
Q 007519 176 YCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAW--NGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEE 253 (600)
Q Consensus 176 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 253 (600)
..+.|++..+.++...+.......|......... ....++....+++-- +.+.....-...+..+.+.+++..
T Consensus 43 a~~~g~~~~~~~~~~~l~d~pL~~yl~y~~L~~~l~~~~~~ev~~Fl~~~~-----~~P~~~~Lr~~~l~~La~~~~w~~ 117 (644)
T PRK11619 43 AWDNRQMDVVEQLMPTLKDYPLYPYLEYRQLTQDLMNQPAVQVTNFIRANP-----TLPPARSLQSRFVNELARREDWRG 117 (644)
T ss_pred HHHCCCHHHHHHHHHhccCCCcHhHHHHHHHHhccccCCHHHHHHHHHHCC-----CCchHHHHHHHHHHHHHHccCHHH
Confidence 4566788888777777754434433333222222 223444444443322 112222223334455566777777
Q ss_pred HHHHhcccCCCCchhHHHHHHHHHhcCChHHHHHHHhhCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChh
Q 007519 254 AQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNA 333 (600)
Q Consensus 254 a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 333 (600)
....+.. .+.+.........+....|+.++|......+-.. ..-..+..-.+|+...+.|...+..
T Consensus 118 ~~~~~~~-~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~-------------g~~~p~~cd~l~~~~~~~g~lt~~d 183 (644)
T PRK11619 118 LLAFSPE-KPKPVEARCNYYYAKWATGQQQEAWQGAKELWLT-------------GKSLPNACDKLFSVWQQSGKQDPLA 183 (644)
T ss_pred HHHhcCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc-------------CCCCChHHHHHHHHHHHcCCCCHHH
Confidence 7774422 2455555566667777777766665444433110 0011233333444444333222222
Q ss_pred HHHHHHHHHhcccchhhhHHHHHHHhhhcCCCc-hhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHH--Hh
Q 007519 334 TFSVLFGAAGATANIDLGRQIHCVLMKTESESD-LILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGF--SH 410 (600)
Q Consensus 334 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~--~~ 410 (600)
.+.- +......|+...|..+...+. ++ ......++..+. +...+...+.... ++...-..++.++ ..
T Consensus 184 ~w~R-~~~al~~~~~~lA~~l~~~l~-----~~~~~~a~a~~al~~---~p~~~~~~~~~~~-~~~~~~~~~~~~l~Rla 253 (644)
T PRK11619 184 YLER-IRLAMKAGNTGLVTYLAKQLP-----ADYQTIASALIKLQN---DPNTVETFARTTG-PTDFTRQMAAVAFASVA 253 (644)
T ss_pred HHHH-HHHHHHCCCHHHHHHHHHhcC-----hhHHHHHHHHHHHHH---CHHHHHHHhhccC-CChhhHHHHHHHHHHHH
Confidence 2222 222334455555555554431 11 112233333333 3334443333321 2221111111122 23
Q ss_pred cCChHHHHHHHHHHHHcC-CCCChh--HHHHHHHHhcccCchHHHHHHHHHHHhhcCCCCCcchHHHHHHHHhhcCChHH
Q 007519 411 HGLANETLKVFESMLESG-THPNSV--TFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKE 487 (600)
Q Consensus 411 ~~~~~~a~~~~~~m~~~~-~~p~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 487 (600)
..+.+.|..++....... ..+... ....+.......+..+++...+...... ..+......-+..-.+.++++.
T Consensus 254 r~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~---~~~~~~~e~r~r~Al~~~dw~~ 330 (644)
T PRK11619 254 RQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMR---SQSTSLLERRVRMALGTGDRRG 330 (644)
T ss_pred HhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccc---cCCcHHHHHHHHHHHHccCHHH
Confidence 455688888888775432 333222 2233332223322255666666654321 2244455555666668888888
Q ss_pred HHHHHHhCC--CCCCHHHHHHHHHHHhhhhCCHHHHHHHHHHHH
Q 007519 488 AEEFVLRLP--FEPDHRIWGALLGACGFCEGNAEIAEHAAKRLL 529 (600)
Q Consensus 488 A~~~~~~~~--~~p~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~ 529 (600)
+...+..|+ ..-...-.-.+..+.. ..|+.++|...|+++.
T Consensus 331 ~~~~i~~L~~~~~~~~rw~YW~aRa~~-~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 331 LNTWLARLPMEAKEKDEWRYWQADLLL-EQGRKAEAEEILRQLM 373 (644)
T ss_pred HHHHHHhcCHhhccCHhhHHHHHHHHH-HcCCHHHHHHHHHHHh
Confidence 888888886 2222333344555656 6788899988888874
No 252
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=95.24 E-value=3.8 Score=41.12 Aligned_cols=398 Identities=12% Similarity=0.094 Sum_probs=187.9
Q ss_pred HHHHhccCCC--CCcchHHHHHHHHHcCCChhHHHHHhhhcCC--CChh-hHHHHHHHHHhcCChHHHHHHhhcCCC---
Q 007519 30 AKALFQLMPQ--RNVVSYNAMLSGFLQNGRLSEARRLFEEMPE--RNVV-SWTAMICGLADAGRVCEARKLFEEMPE--- 101 (600)
Q Consensus 30 A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~--- 101 (600)
-.+.++.... -+-..++.++.---.....+.+...+..++. |-.+ -|......=.+-|..+.+.++|++...
T Consensus 31 ~~~~we~~~~~~~~f~~wt~li~~~~~~~~~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip 110 (577)
T KOG1258|consen 31 SLDYWEILSNDSLDFDAWTTLIQENDSIEDVDALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIP 110 (577)
T ss_pred hhhHhhccccchhcccchHHHHhccCchhHHHHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhh
Confidence 3444444433 3444566666554444555666777777664 4443 345555555677888888888887765
Q ss_pred CCceeHHHHHHHHH-HCCChhHHHHHhhcCCC------CCcccHHHHHHHHHhcCCHhHHHHHHHhcccCCchhHHHHHH
Q 007519 102 RNVVSWNSMVVGLI-RNGELNEARKVFNSMPI------KNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMIS 174 (600)
Q Consensus 102 ~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~ 174 (600)
.+...|......+. ..|+.+...+.|++.+. .+...|...|..-...+++.....+++..++-....++....
T Consensus 111 ~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~f~ 190 (577)
T KOG1258|consen 111 LSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRHFD 190 (577)
T ss_pred hHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHHHH
Confidence 34445554444333 45777777777777765 344566677777677777888888888777644444444443
Q ss_pred HHHhc---------CChhHHHHHHccCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhhhcCCCCCCh--hhHHHHHH
Q 007519 175 GYCRA---------GEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNV--QSCNSMIN 243 (600)
Q Consensus 175 ~~~~~---------g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~~~~l~~ 243 (600)
.|.+. ...+.+.++-........ ....++..+-.+ ..+... +.+.+. ..-+.+..
T Consensus 191 ~f~~~l~~~~~~~l~~~d~~~~l~~~~~~~~~---------~~~~~~~~e~~~--~~v~~~---~~~s~~l~~~~~~l~~ 256 (577)
T KOG1258|consen 191 RFKQLLNQNEEKILLSIDELIQLRSDVAERSK---------ITHSQEPLEELE--IGVKDS---TDPSKSLTEEKTILKR 256 (577)
T ss_pred HHHHHHhcCChhhhcCHHHHHHHhhhHHhhhh---------cccccChhHHHH--HHHhhc---cCccchhhHHHHHHHH
Confidence 33221 111222111111100000 000000000000 000000 000000 00001111
Q ss_pred H-------HHhcCChhhHHHHhcccC-----------CCCchhHHHHHHHHHhcCChHHHHHHHhhCCCC---ChhhHHH
Q 007519 244 G-------YIRFGRLEEAQNLFDTVP-----------VRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDR---DAVAWTA 302 (600)
Q Consensus 244 ~-------~~~~~~~~~a~~~~~~~~-----------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~ 302 (600)
. +...-........++... +.+..+|..-+.--...|+++.+.-+|+...-| =...|-.
T Consensus 257 ~~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWik 336 (577)
T KOG1258|consen 257 IVSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIK 336 (577)
T ss_pred HHHHHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHH
Confidence 1 111111111122222221 123345666666666677777777776665442 1234444
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHH-HHhcccchhhhHHHHHHHhhhcCCCchhHHHHHHHHHHhcC
Q 007519 303 MISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFG-AAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCG 381 (600)
Q Consensus 303 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 381 (600)
.+.-....|+.+-|-.++....+-- .|+......+-. .+-..|+...|..+++.+...- +.-..+-..-+....+.|
T Consensus 337 y~~~m~~~~~~~~~~~~~~~~~~i~-~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~-pg~v~~~l~~~~~e~r~~ 414 (577)
T KOG1258|consen 337 YARWMESSGDVSLANNVLARACKIH-VKKTPIIHLLEARFEESNGNFDDAKVILQRIESEY-PGLVEVVLRKINWERRKG 414 (577)
T ss_pred HHHHHHHcCchhHHHHHHHhhhhhc-CCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhC-CchhhhHHHHHhHHHHhc
Confidence 4444445577776666665554432 222222222222 2334567777777777666554 212222223334445566
Q ss_pred ChHHHH---HHHhcCC--CCChhhHHHHHHH-----HHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhc
Q 007519 382 VIDNAY---NIFSNMV--SRDLVSWNSMVMG-----FSHHGLANETLKVFESMLESGTHPNSVTFLGILSACS 444 (600)
Q Consensus 382 ~~~~A~---~~~~~~~--~~~~~~~~~l~~~-----~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~ 444 (600)
+.+.+. +++.... ..+....+.+.-- +.-.++.+.|..++.++.+. ++++...|..++..+.
T Consensus 415 ~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~ 486 (577)
T KOG1258|consen 415 NLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIREDADLARIILLEANDI-LPDCKVLYLELIRFEL 486 (577)
T ss_pred chhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHH
Confidence 666665 3333332 1222222222221 23356677777777777664 4555555555554443
No 253
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=95.24 E-value=6.2 Score=43.77 Aligned_cols=253 Identities=9% Similarity=-0.008 Sum_probs=143.8
Q ss_pred HHhhhcCCCChhhHHHHHHHHHhcCChHHHHHHhhcCCCCCceeHHHHHHHHHHCCChh-HHHHHhhcCCCCCcccHHHH
Q 007519 63 RLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELN-EARKVFNSMPIKNVISWNAM 141 (600)
Q Consensus 63 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~a~~~~~~~~~~~~~~~~~l 141 (600)
.+.+.+..+|+.+-..-+..+.+.+..+....+.+.+..+|.......+.++.+.++.. ....+...+..+|+..-...
T Consensus 625 ~L~~~L~D~d~~VR~~Av~~L~~~~~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~~d~~VR~~A 704 (897)
T PRK13800 625 ELAPYLADPDPGVRRTAVAVLTETTPPGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPPAPALRDHLGSPDPVVRAAA 704 (897)
T ss_pred HHHHHhcCCCHHHHHHHHHHHhhhcchhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCchHHHHHHhcCCCHHHHHHH
Confidence 44444455777777777777777666443333444444466655555555555443221 11122222333566666666
Q ss_pred HHHHHhcCCHhHHHHHHHhcccCCchhHHHHHHHHHhcCChhHHHHHHccCCCCCcchHHHHHHHHHhcCChhH-HHHHH
Q 007519 142 IAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKE-SLLLF 220 (600)
Q Consensus 142 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~-a~~~~ 220 (600)
+.++...+.. ....++..+..+|..+-...+.++.+.+..+. +...+..++...-...+.++...+..+. +...+
T Consensus 705 ~~aL~~~~~~-~~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~---l~~~l~D~~~~VR~~aa~aL~~~~~~~~~~~~~L 780 (897)
T PRK13800 705 LDVLRALRAG-DAALFAAALGDPDHRVRIEAVRALVSVDDVES---VAGAATDENREVRIAVAKGLATLGAGGAPAGDAV 780 (897)
T ss_pred HHHHHhhccC-CHHHHHHHhcCCCHHHHHHHHHHHhcccCcHH---HHHHhcCCCHHHHHHHHHHHHHhccccchhHHHH
Confidence 6666554321 12334455556777666666777666554432 2333445666666666677776665443 34555
Q ss_pred HHHHhhhcCCCCCChhhHHHHHHHHHhcCChhhHH-HHhcccCCCCchhHHHHHHHHHhcCChHHHHHHHhhCCCCChhh
Q 007519 221 IEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQ-NLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVA 299 (600)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 299 (600)
..+.. .+|...-...+.++...+..+.+. .+...+..++..+-...+.++...+..+....+...+.+++...
T Consensus 781 ~~ll~------D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~~~a~~~L~~~L~D~~~~V 854 (897)
T PRK13800 781 RALTG------DPDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAADVAVPALVEALTDPHLDV 854 (897)
T ss_pred HHHhc------CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccccchHHHHHHHhcCCCHHH
Confidence 55543 456666677777777777655443 23344445666677777777777776544444455555677777
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHH
Q 007519 300 WTAMISGLVQNELFVEATYLFMEMRA 325 (600)
Q Consensus 300 ~~~li~~~~~~g~~~~a~~~~~~m~~ 325 (600)
-...+.++.+.+....+...+....+
T Consensus 855 R~~A~~aL~~~~~~~~a~~~L~~al~ 880 (897)
T PRK13800 855 RKAAVLALTRWPGDPAARDALTTALT 880 (897)
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHHh
Confidence 77777777775444566667766665
No 254
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.21 E-value=2.2 Score=38.19 Aligned_cols=218 Identities=19% Similarity=0.140 Sum_probs=94.5
Q ss_pred CChhHHHHHHHHHHHCCCCC-ChhHHHHHHHHHhcccchhhhHHHHHHHhhh-cCCCchhHHHHHHHHHHhcCChHHHHH
Q 007519 311 ELFVEATYLFMEMRAHGVPP-LNATFSVLFGAAGATANIDLGRQIHCVLMKT-ESESDLILENCLISMYAKCGVIDNAYN 388 (600)
Q Consensus 311 g~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~ 388 (600)
+....+...+.......... ....+......+...+....+...+...... ........+......+...+++..+..
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 34444445554444432111 2344444444555555555555555544432 222233333444444445555555555
Q ss_pred HHhcCCC--CCh-hhHHHHHH-HHHhcCChHHHHHHHHHHHHcCCCC----ChhHHHHHHHHhcccCchHHHHHHHHHHH
Q 007519 389 IFSNMVS--RDL-VSWNSMVM-GFSHHGLANETLKVFESMLESGTHP----NSVTFLGILSACSHAGLVSRGWELFNAMF 460 (600)
Q Consensus 389 ~~~~~~~--~~~-~~~~~l~~-~~~~~~~~~~a~~~~~~m~~~~~~p----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 460 (600)
.+..... ++. ........ .+...|+++.|...+.+... ..| ....+......+...++.+.+...+....
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 194 (291)
T COG0457 117 LLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALE--LDPELNELAEALLALGALLEALGRYEEALELLEKAL 194 (291)
T ss_pred HHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHH
Confidence 5554442 111 11222222 45555555555555555533 122 11222222222344455555555555554
Q ss_pred hhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHhCC-CCCC-HHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCC
Q 007519 461 DVYKIQP-GPEHYVSMINLLGRAGKIKEAEEFVLRLP-FEPD-HRIWGALLGACGFCEGNAEIAEHAAKRLLELDP 533 (600)
Q Consensus 461 ~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p 533 (600)
.. ... ....+..+...+...++++.|...+.... ..|+ ...+......+. ..+..+.+...+.+.....|
T Consensus 195 ~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 267 (291)
T COG0457 195 KL--NPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLL-ELGRYEEALEALEKALELDP 267 (291)
T ss_pred hh--CcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHH-HcCCHHHHHHHHHHHHHhCc
Confidence 32 111 23444445555555555555555554442 2222 223333333333 44455555555555555555
No 255
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.20 E-value=0.33 Score=44.85 Aligned_cols=120 Identities=13% Similarity=0.129 Sum_probs=66.5
Q ss_pred HHhcccchhhhHHHHHHHhhhcC-----CCchhHHHHHHHHHHhcCChHHHHHHHhcCC-------CCCh------hhHH
Q 007519 341 AAGATANIDLGRQIHCVLMKTES-----ESDLILENCLISMYAKCGVIDNAYNIFSNMV-------SRDL------VSWN 402 (600)
Q Consensus 341 ~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-------~~~~------~~~~ 402 (600)
++...+.++++.+.|+.+.+-.. -....++..|...|....|+++|.-+..+.. -.|. .+.-
T Consensus 131 Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~ly 210 (518)
T KOG1941|consen 131 AHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLY 210 (518)
T ss_pred HhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHH
Confidence 44444445555555543333211 1134456667777777777776655444332 1222 1223
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHH----cCCCCCh-hHHHHHHHHhcccCchHHHHHHHHHHH
Q 007519 403 SMVMGFSHHGLANETLKVFESMLE----SGTHPNS-VTFLGILSACSHAGLVSRGWELFNAMF 460 (600)
Q Consensus 403 ~l~~~~~~~~~~~~a~~~~~~m~~----~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~ 460 (600)
.|.-++...|+.-.|.+.-++..+ .|-+|.. .....+.+.|-..|+.+.|+.-|+.+.
T Consensus 211 hmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 211 HMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 344566677777777777666543 3433322 345566677888889888888777665
No 256
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.20 E-value=0.78 Score=46.14 Aligned_cols=118 Identities=21% Similarity=0.205 Sum_probs=73.9
Q ss_pred cCChHHHHHHHHHHHHcCCCCChhHHHHHH-HHhcccCchHHHHHHHHHHHhhc-CCCC-CcchHHHHHHHHhhcCChHH
Q 007519 411 HGLANETLKVFESMLESGTHPNSVTFLGIL-SACSHAGLVSRGWELFNAMFDVY-KIQP-GPEHYVSMINLLGRAGKIKE 487 (600)
Q Consensus 411 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~-~~~~~~g~~~~a~~~~~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~ 487 (600)
..+.+.|.+++..+.+. -|+...|...- +.+...|++++|.+.|+++.... .++. ....+--++..+.-.++|++
T Consensus 246 ~~~~~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~ 323 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEE 323 (468)
T ss_pred CCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHH
Confidence 34566777888877764 56666555443 45566788888888888655311 1111 23345556677778888888
Q ss_pred HHHHHHhCC--CCCCHHHHHHHHHHHhhhhCCH-------HHHHHHHHHHHh
Q 007519 488 AEEFVLRLP--FEPDHRIWGALLGACGFCEGNA-------EIAEHAAKRLLE 530 (600)
Q Consensus 488 A~~~~~~~~--~~p~~~~~~~l~~~~~~~~g~~-------~~a~~~~~~~~~ 530 (600)
|.+.+.++. ..-....|..+.++|....|+. ++|..+++++-.
T Consensus 324 A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 324 AAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 888887775 2334555666666665566766 666666666544
No 257
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.20 E-value=0.32 Score=43.49 Aligned_cols=57 Identities=19% Similarity=0.247 Sum_probs=26.7
Q ss_pred HHHHhcccCchHHHHHHHHHHHhhcCCCCC-cchHHHHHHHHhhcCChHHHHHHHHhC
Q 007519 439 ILSACSHAGLVSRGWELFNAMFDVYKIQPG-PEHYVSMINLLGRAGKIKEAEEFVLRL 495 (600)
Q Consensus 439 l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 495 (600)
|..++...|+++.|..+|..+.+.++-.|. +..+.-|+....+.|+.++|...|+++
T Consensus 184 LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv 241 (262)
T COG1729 184 LGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQV 241 (262)
T ss_pred HHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 444444455555555555544444333332 344444444445555555555444443
No 258
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.14 E-value=0.66 Score=42.49 Aligned_cols=45 Identities=13% Similarity=0.108 Sum_probs=19.3
Q ss_pred CChHHHHHHHhcCC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 007519 381 GVIDNAYNIFSNMV---SRDLVSWNSMVMGFSHHGLANETLKVFESML 425 (600)
Q Consensus 381 ~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 425 (600)
|+..+|-..++++. +.|...++..-.+|.-.|+.+.-...+++..
T Consensus 117 g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIi 164 (491)
T KOG2610|consen 117 GKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKII 164 (491)
T ss_pred ccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhc
Confidence 34444444444433 3344444444444444444444444444443
No 259
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.05 E-value=1.8 Score=39.32 Aligned_cols=175 Identities=18% Similarity=0.110 Sum_probs=101.3
Q ss_pred HHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccCchHHHHHHHHHHHhhcC
Q 007519 385 NAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYK 464 (600)
Q Consensus 385 ~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 464 (600)
...+++++..++....--.-.......|++.+|..+|....... +-+......+..++...|+.+.|..++..+-.. .
T Consensus 121 qlr~~ld~~~~~~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~-~ 198 (304)
T COG3118 121 QLRQFLDKVLPAEEEEALAEAKELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQ-A 198 (304)
T ss_pred HHHHHHHHhcChHHHHHHHHhhhhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCccc-c
Confidence 44445555544422222222344567788888888888877652 333455556677888888888888888765432 0
Q ss_pred CCCCcchHHHHHHHHhhcCChHHHHHHHHhCCCCC-CHHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhC--CCCCCcHHH
Q 007519 465 IQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEP-DHRIWGALLGACGFCEGNAEIAEHAAKRLLELD--PLNAPAHVV 541 (600)
Q Consensus 465 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~--p~~~~~~~~ 541 (600)
-.........-+..+.+.....+...+-.+.-..| |...-..+...+. ..|+.+.|...+-.+++.+ -.+...-..
T Consensus 199 ~~~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~-~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~ 277 (304)
T COG3118 199 QDKAAHGLQAQIELLEQAAATPEIQDLQRRLAADPDDVEAALALADQLH-LVGRNEAALEHLLALLRRDRGFEDGEARKT 277 (304)
T ss_pred hhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhcccccCcHHHHH
Confidence 01111122233455555555555555555554455 4444455555666 7788888887777777643 335666777
Q ss_pred HhHHHHhhCCcHHHHH-HHHHH
Q 007519 542 LCNIYAASGRHVEEHK-LRMDM 562 (600)
Q Consensus 542 l~~~~~~~g~~~~A~~-~~~~~ 562 (600)
++..+.-.|..+.+.. +++.|
T Consensus 278 lle~f~~~g~~Dp~~~~~RRkL 299 (304)
T COG3118 278 LLELFEAFGPADPLVLAYRRKL 299 (304)
T ss_pred HHHHHHhcCCCCHHHHHHHHHH
Confidence 7777777775554433 44443
No 260
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=94.98 E-value=6.9 Score=42.75 Aligned_cols=117 Identities=15% Similarity=0.128 Sum_probs=68.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccCch
Q 007519 370 ENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLV 449 (600)
Q Consensus 370 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~ 449 (600)
|.-.++...+.|-+.+|+.++.--.+.-...|.+....+...+.+++|.-.|+..-+ ..-.+.+|...|++
T Consensus 911 ~~e~~n~I~kh~Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dW 981 (1265)
T KOG1920|consen 911 FPECKNYIKKHGLYDEALALYKPDSEKQKVIYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDW 981 (1265)
T ss_pred cHHHHHHHHhcccchhhhheeccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccH
Confidence 344455555666666666655443333334555555556666777777666665422 12345666777888
Q ss_pred HHHHHHHHHHHhhcCCCCC--cchHHHHHHHHhhcCChHHHHHHHHhCCCCC
Q 007519 450 SRGWELFNAMFDVYKIQPG--PEHYVSMINLLGRAGKIKEAEEFVLRLPFEP 499 (600)
Q Consensus 450 ~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p 499 (600)
.+|..+..++.. .-+ ..+-..|+.-+...+++-+|.++..+....|
T Consensus 982 r~~l~~a~ql~~----~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd~ 1029 (1265)
T KOG1920|consen 982 REALSLAAQLSE----GKDELVILAEELVSRLVEQRKHYEAAKILLEYLSDP 1029 (1265)
T ss_pred HHHHHHHHhhcC----CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcCH
Confidence 888777665532 112 1122567777778888888888877765443
No 261
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.98 E-value=1.4 Score=43.76 Aligned_cols=70 Identities=16% Similarity=0.213 Sum_probs=30.6
Q ss_pred HhcCChhhHHHHhcccCCCCchhHHHHHHHHHhcCChHHHHHHHhhCCCCChhhHHHHHHHHHhCCChhHHHHHHHH
Q 007519 246 IRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFME 322 (600)
Q Consensus 246 ~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 322 (600)
.+.|+++.|.++.++.. ++..|..|.+...+.|+++-|++.|.+..+ +..|+-.|.-.|+.+...++.+.
T Consensus 329 l~lg~L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d-----~~~L~lLy~~~g~~~~L~kl~~~ 398 (443)
T PF04053_consen 329 LQLGNLDIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD-----FSGLLLLYSSTGDREKLSKLAKI 398 (443)
T ss_dssp HHCT-HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT------HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC-----ccccHHHHHHhCCHHHHHHHHHH
Confidence 44555555555544443 333455555555555555555555444432 33333344444444443333333
No 262
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.86 E-value=1.8 Score=42.98 Aligned_cols=157 Identities=12% Similarity=0.087 Sum_probs=98.7
Q ss_pred HHhcCChhHHHHHHH--HHHhhhcCCCCCChhhHHHHHHHHHhcCChhhHHHHhcccCCCCchhHHHHHHHHHhcCChHH
Q 007519 207 FAWNGFHKESLLLFI--EMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSN 284 (600)
Q Consensus 207 ~~~~~~~~~a~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 284 (600)
..-.++++.+.+..+ ++.. .+ | ..-.+.+++.+.+.|-.+.|+++... + ..-.+...+.|+++.
T Consensus 271 av~~~d~~~v~~~i~~~~ll~----~i-~-~~~~~~i~~fL~~~G~~e~AL~~~~D-----~---~~rFeLAl~lg~L~~ 336 (443)
T PF04053_consen 271 AVLRGDFEEVLRMIAASNLLP----NI-P-KDQGQSIARFLEKKGYPELALQFVTD-----P---DHRFELALQLGNLDI 336 (443)
T ss_dssp HHHTT-HHH-----HHHHTGG----G----HHHHHHHHHHHHHTT-HHHHHHHSS------H---HHHHHHHHHCT-HHH
T ss_pred HHHcCChhhhhhhhhhhhhcc----cC-C-hhHHHHHHHHHHHCCCHHHHHhhcCC-----h---HHHhHHHHhcCCHHH
Confidence 344566666655554 2221 11 2 44466777777788888888877542 2 244566778899999
Q ss_pred HHHHHhhCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhcccchhhhHHHHHHHhhhcCC
Q 007519 285 AYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESE 364 (600)
Q Consensus 285 A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 364 (600)
|.++.++.. +...|..|.......|+++-|.+.|.+... +..|+-.|...|+.+...++.......|.
T Consensus 337 A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~- 404 (443)
T PF04053_consen 337 ALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERGD- 404 (443)
T ss_dssp HHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT--
T ss_pred HHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHccC-
Confidence 988877665 566899999999999999999888886543 45666667777888777777777666654
Q ss_pred CchhHHHHHHHHHHhcCChHHHHHHHhcCC
Q 007519 365 SDLILENCLISMYAKCGVIDNAYNIFSNMV 394 (600)
Q Consensus 365 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 394 (600)
++....++.-.|+.++..+++.+..
T Consensus 405 -----~n~af~~~~~lgd~~~cv~lL~~~~ 429 (443)
T PF04053_consen 405 -----INIAFQAALLLGDVEECVDLLIETG 429 (443)
T ss_dssp -----HHHHHHHHHHHT-HHHHHHHHHHTT
T ss_pred -----HHHHHHHHHHcCCHHHHHHHHHHcC
Confidence 2444555566688888888777654
No 263
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=94.81 E-value=1.3 Score=44.71 Aligned_cols=160 Identities=16% Similarity=0.050 Sum_probs=105.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCCh-----hHHHHHHHHhc----ccCchHHHHHHHHHHHhhcCCCCCcc
Q 007519 401 WNSMVMGFSHHGLANETLKVFESMLESG-THPNS-----VTFLGILSACS----HAGLVSRGWELFNAMFDVYKIQPGPE 470 (600)
Q Consensus 401 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~-~~p~~-----~~~~~l~~~~~----~~g~~~~a~~~~~~~~~~~~~~p~~~ 470 (600)
...++....-.||-+.+++.+.+..+.+ +.-.. ..|..++..+. ...+.+.|.++++.+.+. -|+..
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~---yP~s~ 267 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR---YPNSA 267 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh---CCCcH
Confidence 3456666677788888888887765532 11111 12333333222 256788999999999875 57644
Q ss_pred hHH-HHHHHHhhcCChHHHHHHHHhCCC------CCCHHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCCCcHHHH-
Q 007519 471 HYV-SMINLLGRAGKIKEAEEFVLRLPF------EPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVL- 542 (600)
Q Consensus 471 ~~~-~l~~~~~~~g~~~~A~~~~~~~~~------~p~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l- 542 (600)
.|. .-++.+...|++++|.+.+++... +-....+..+...+. ..+++++|...+.++.+.+.-+..+|..+
T Consensus 268 lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~-~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~ 346 (468)
T PF10300_consen 268 LFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHM-FQHDWEEAAEYFLRLLKESKWSKAFYAYLA 346 (468)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHH-HHchHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 444 456777889999999999997541 112233444555556 78999999999999999766455555544
Q ss_pred hHHHHhhCCc-------HHHHHHHHHHhh
Q 007519 543 CNIYAASGRH-------VEEHKLRMDMGL 564 (600)
Q Consensus 543 ~~~~~~~g~~-------~~A~~~~~~~~~ 564 (600)
+-++...|+. ++|.+++..+..
T Consensus 347 a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 347 AACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 4445577888 888887766654
No 264
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=94.75 E-value=1.6 Score=34.24 Aligned_cols=141 Identities=14% Similarity=0.153 Sum_probs=78.1
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCCCcchHHHHHHHHhhcCChHH
Q 007519 408 FSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKE 487 (600)
Q Consensus 408 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 487 (600)
+.-.|..++..+++.+.... .+..-++.++--....-+=+-..+.++.+-+-+.+.|- ...-.++..|...|
T Consensus 12 ~ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~C-~NlKrVi~C~~~~n---- 83 (161)
T PF09205_consen 12 RILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISKC-GNLKRVIECYAKRN---- 83 (161)
T ss_dssp HHHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG--S-THHHHHHHHHTT----
T ss_pred HHHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhhcCchhh-cchHHHHHHHHHhc----
Confidence 34567778888888777653 23333444433222233333444445544332222221 11223344444444
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCCCcHHHHhHHHHhhCCcHHHHHHHHHHhhcCC
Q 007519 488 AEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGV 567 (600)
Q Consensus 488 A~~~~~~~~~~p~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 567 (600)
.+...+...+.... .+|..++-.+++..+.+.+..+|.....++.+|.+.|+..++.+++...-++|+
T Consensus 84 -----------~~se~vD~ALd~lv-~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 84 -----------KLSEYVDLALDILV-KQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp --------------HHHHHHHHHHH-HTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred -----------chHHHHHHHHHHHH-HhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 23444556666777 889988888888888764433889999999999999999999999999888887
Q ss_pred c
Q 007519 568 R 568 (600)
Q Consensus 568 ~ 568 (600)
+
T Consensus 152 k 152 (161)
T PF09205_consen 152 K 152 (161)
T ss_dssp H
T ss_pred H
Confidence 4
No 265
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=94.62 E-value=3.1 Score=37.07 Aligned_cols=59 Identities=20% Similarity=0.070 Sum_probs=46.2
Q ss_pred HHHHHhhhhCCHHHHHHHHHHHHhhCCCCCCc---HHHHhHHHHhhCCcHHHHHHHHHHhhcC
Q 007519 507 LLGACGFCEGNAEIAEHAAKRLLELDPLNAPA---HVVLCNIYAASGRHVEEHKLRMDMGLKG 566 (600)
Q Consensus 507 l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 566 (600)
+...|. +.|.+..|+.-++.+++.-|+.+.+ +..+..+|...|..++|.+.-+.+...-
T Consensus 173 IaryY~-kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~ 234 (254)
T COG4105 173 IARYYL-KRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANY 234 (254)
T ss_pred HHHHHH-HhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcC
Confidence 334566 8999999999999999988766544 5566778999999999999887766543
No 266
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=94.58 E-value=9.3 Score=42.41 Aligned_cols=254 Identities=8% Similarity=-0.035 Sum_probs=160.8
Q ss_pred HHHHhhcCCCCCceeHHHHHHHHHHCCChhHHHHHhhcCCCCCcccHHHHHHHHHhcCCH-hHHHHHHHhcccCCchhHH
Q 007519 92 ARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMM-GEAIVLFEEMEERNVVTWT 170 (600)
Q Consensus 92 A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~A~~~~~~~~~~~~~~~~ 170 (600)
...+.+.+..+|+......+..+.+.+..+....+...+.+++...-...+.++.+.+.. .....+...+..+|..+..
T Consensus 623 ~~~L~~~L~D~d~~VR~~Av~~L~~~~~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~~d~~VR~ 702 (897)
T PRK13800 623 VAELAPYLADPDPGVRRTAVAVLTETTPPGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPPAPALRDHLGSPDPVVRA 702 (897)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHhhhcchhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCchHHHHHHhcCCCHHHHH
Confidence 345555566788888888888888888765444455555557777666777776665432 2222233334457777777
Q ss_pred HHHHHHHhcCChhHHHHHHccCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHhcCC
Q 007519 171 SMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGR 250 (600)
Q Consensus 171 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 250 (600)
..+.++...+.-+ ...+...+..+|...-...+.++.+.+..+. +..... .++...-...+.++...+.
T Consensus 703 ~A~~aL~~~~~~~-~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~----l~~~l~------D~~~~VR~~aa~aL~~~~~ 771 (897)
T PRK13800 703 AALDVLRALRAGD-AALFAAALGDPDHRVRIEAVRALVSVDDVES----VAGAAT------DENREVRIAVAKGLATLGA 771 (897)
T ss_pred HHHHHHHhhccCC-HHHHHHHhcCCCHHHHHHHHHHHhcccCcHH----HHHHhc------CCCHHHHHHHHHHHHHhcc
Confidence 7777776554221 2345556667787777777777777655432 222222 4566666677777777765
Q ss_pred hhh-HHH-HhcccCCCCchhHHHHHHHHHhcCChHHHH-HHHhhCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCC
Q 007519 251 LEE-AQN-LFDTVPVRDEISWTSMIDGYLSVGQVSNAY-YLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHG 327 (600)
Q Consensus 251 ~~~-a~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~-~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 327 (600)
.+. +.. +...+..+++.+....+.++...|....+. .+...+.+++...-...+.++...+. +++...+..+.+
T Consensus 772 ~~~~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-~~a~~~L~~~L~-- 848 (897)
T PRK13800 772 GGAPAGDAVRALTGDPDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAA-DVAVPALVEALT-- 848 (897)
T ss_pred ccchhHHHHHHHhcCCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccc-cchHHHHHHHhc--
Confidence 443 223 333345778888999999999999876553 34455556777777777888887775 456666666664
Q ss_pred CCCChhHHHHHHHHHhcccchhhhHHHHHHHhh
Q 007519 328 VPPLNATFSVLFGAAGATANIDLGRQIHCVLMK 360 (600)
Q Consensus 328 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 360 (600)
.|+...-...+.++.+......+...+..+.+
T Consensus 849 -D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~ 880 (897)
T PRK13800 849 -DPHLDVRKAAVLALTRWPGDPAARDALTTALT 880 (897)
T ss_pred -CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHh
Confidence 56777777777777776434456666665554
No 267
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.45 E-value=2.2 Score=34.69 Aligned_cols=126 Identities=15% Similarity=0.053 Sum_probs=60.2
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCCCcchHHHHHHHHhh
Q 007519 402 NSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGR 481 (600)
Q Consensus 402 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 481 (600)
..++..+...+.......+++.+...+ ..+....+.++..|++.+ .++..+.++. .++.......+..+.+
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~-------~~~~yd~~~~~~~c~~ 81 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN-------KSNHYDIEKVGKLCEK 81 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh-------ccccCCHHHHHHHHHH
Confidence 344555555566666666666666554 244445555555555432 2222333321 1122233345555666
Q ss_pred cCChHHHHHHHHhCCCCCCHHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCCCcHHHHhHHHH
Q 007519 482 AGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYA 547 (600)
Q Consensus 482 ~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 547 (600)
.+.++++.-++.+++. +...+..+....++.+.|++++++ +.++..|..++..+.
T Consensus 82 ~~l~~~~~~l~~k~~~------~~~Al~~~l~~~~d~~~a~~~~~~-----~~~~~lw~~~~~~~l 136 (140)
T smart00299 82 AKLYEEAVELYKKDGN------FKDAIVTLIEHLGNYEKAIEYFVK-----QNNPELWAEVLKALL 136 (140)
T ss_pred cCcHHHHHHHHHhhcC------HHHHHHHHHHcccCHHHHHHHHHh-----CCCHHHHHHHHHHHH
Confidence 6666666666666542 112222222022566666666654 224445555554443
No 268
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=94.43 E-value=0.32 Score=38.53 Aligned_cols=80 Identities=13% Similarity=0.165 Sum_probs=41.9
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHHc---------------CCCCChhHHHHHHHHhcccCchHHHHHHHHHHHhh
Q 007519 398 LVSWNSMVMGFSHHGLANETLKVFESMLES---------------GTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDV 462 (600)
Q Consensus 398 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~---------------~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 462 (600)
..++..++.++++.|+.+....+++..-.- ...|+..+..+++.+|+..|++..|.++++...+.
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~ 81 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRK 81 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 344555556666666665555555443110 12244555555555555556666666666655555
Q ss_pred cCCCCCcchHHHHHH
Q 007519 463 YKIQPGPEHYVSMIN 477 (600)
Q Consensus 463 ~~~~p~~~~~~~l~~ 477 (600)
++++-+..+|..|++
T Consensus 82 Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 82 YPIPIPKEFWRRLLE 96 (126)
T ss_pred cCCCCCHHHHHHHHH
Confidence 554445555555443
No 269
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.27 E-value=2.7 Score=41.16 Aligned_cols=96 Identities=14% Similarity=0.182 Sum_probs=67.1
Q ss_pred HHHHHHhcccCchHHHHHHHHHHHhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhCC--CCCCHH--HHHHHHHHHh
Q 007519 437 LGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLP--FEPDHR--IWGALLGACG 512 (600)
Q Consensus 437 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~--~~~~l~~~~~ 512 (600)
..+..++-+.|+.++|.+.++++.+.+...-...+...|++.|...+.+.++..++.+.. .-|... .|+..+-...
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaR 342 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKAR 342 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHH
Confidence 446667778899999999999998753222235577789999999999999999998875 134443 3444443322
Q ss_pred hhhCC---------------HHHHHHHHHHHHhhCC
Q 007519 513 FCEGN---------------AEIAEHAAKRLLELDP 533 (600)
Q Consensus 513 ~~~g~---------------~~~a~~~~~~~~~~~p 533 (600)
..+| ...|.+.+.++.+.+|
T Consensus 343 -av~d~fs~e~a~rRGls~ae~~aveAi~RAvefNP 377 (539)
T PF04184_consen 343 -AVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNP 377 (539)
T ss_pred -hhccccCchhhhhcCCChhHHHHHHHHHHHHHhCC
Confidence 2232 2346788999999887
No 270
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.22 E-value=3.6 Score=36.18 Aligned_cols=23 Identities=9% Similarity=-0.094 Sum_probs=11.2
Q ss_pred HHHHHHHHHhCCChhHHHHHHHH
Q 007519 300 WTAMISGLVQNELFVEATYLFME 322 (600)
Q Consensus 300 ~~~li~~~~~~g~~~~a~~~~~~ 322 (600)
|+.....|...|.++.|-..+++
T Consensus 94 ~eKAs~lY~E~GspdtAAmaleK 116 (308)
T KOG1585|consen 94 YEKASELYVECGSPDTAAMALEK 116 (308)
T ss_pred HHHHHHHHHHhCCcchHHHHHHH
Confidence 33344455555555555444444
No 271
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.13 E-value=0.47 Score=43.41 Aligned_cols=161 Identities=11% Similarity=-0.052 Sum_probs=119.6
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCCCcchHH----HHHHHHhhcC
Q 007519 408 FSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYV----SMINLLGRAG 483 (600)
Q Consensus 408 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~----~l~~~~~~~g 483 (600)
+...|...+|...++++.+. .+.|...+...=++|...|+.+.-...++++.. ...|+...|. .+...+..+|
T Consensus 113 ~~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip--~wn~dlp~~sYv~GmyaFgL~E~g 189 (491)
T KOG2610|consen 113 LWGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIP--KWNADLPCYSYVHGMYAFGLEECG 189 (491)
T ss_pred hhccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhcc--ccCCCCcHHHHHHHHHHhhHHHhc
Confidence 34578888888999999875 577777777777899999999999999998885 4566654444 4556677999
Q ss_pred ChHHHHHHHHhCC-CCC-CHHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCC----CCCcHHHHhHHHHhhCCcHHHHH
Q 007519 484 KIKEAEEFVLRLP-FEP-DHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPL----NAPAHVVLCNIYAASGRHVEEHK 557 (600)
Q Consensus 484 ~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~A~~ 557 (600)
-+++|++.-++.. +.| |...-+...-.+. ..|+..++.++..+--..-.. -...|.+.+-.+...+.++.|.+
T Consensus 190 ~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVle-m~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~ale 268 (491)
T KOG2610|consen 190 IYDDAEKQADRALQINRFDCWASHAKAHVLE-MNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALE 268 (491)
T ss_pred cchhHHHHHHhhccCCCcchHHHHHHHHHHH-hcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHH
Confidence 9999999998874 444 5666677777777 889999999888775543221 23567777878888899999999
Q ss_pred HHHHHhhcCCccCCC
Q 007519 558 LRMDMGLKGVRKVPG 572 (600)
Q Consensus 558 ~~~~~~~~~~~~~~~ 572 (600)
+++.-.-+...++.+
T Consensus 269 IyD~ei~k~l~k~Da 283 (491)
T KOG2610|consen 269 IYDREIWKRLEKDDA 283 (491)
T ss_pred HHHHHHHHHhhccch
Confidence 887554444444443
No 272
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=93.97 E-value=4.3 Score=36.17 Aligned_cols=221 Identities=14% Similarity=0.174 Sum_probs=120.8
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHC---CC--CCChhHHHHHHHHHhcccchhhhHHHHHHHhhh-----cCCCchhH
Q 007519 300 WTAMISGLVQNELFVEATYLFMEMRAH---GV--PPLNATFSVLFGAAGATANIDLGRQIHCVLMKT-----ESESDLIL 369 (600)
Q Consensus 300 ~~~li~~~~~~g~~~~a~~~~~~m~~~---g~--~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~ 369 (600)
...++..+.+.|++++.+..|.+|..- .+ .-+..+.+.++...+...+.+....+++.-.+. +-..--.+
T Consensus 68 LKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKT 147 (440)
T KOG1464|consen 68 LKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKT 147 (440)
T ss_pred HHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeec
Confidence 344555666666666666666665421 11 234456666666666566666555555522211 11111223
Q ss_pred HHHHHHHHHhcCChHHHHHHHhcCC--------CC-------ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCCh
Q 007519 370 ENCLISMYAKCGVIDNAYNIFSNMV--------SR-------DLVSWNSMVMGFSHHGLANETLKVFESMLESG-THPNS 433 (600)
Q Consensus 370 ~~~l~~~~~~~~~~~~A~~~~~~~~--------~~-------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-~~p~~ 433 (600)
-.-|...|...+.+.+...+++++. .. -...|..-|..|....+-.+...++++..... --|.+
T Consensus 148 NtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHP 227 (440)
T KOG1464|consen 148 NTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHP 227 (440)
T ss_pred cchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCch
Confidence 3456677777777777777776653 11 12466667778888877777777887765432 23444
Q ss_pred hHHHHHHHHh-----cccCchHHHHHHHHHHHhhcCCC--CC---cchHHHHHHHHhhcCC----hHHHHHHHHhCCCCC
Q 007519 434 VTFLGILSAC-----SHAGLVSRGWELFNAMFDVYKIQ--PG---PEHYVSMINLLGRAGK----IKEAEEFVLRLPFEP 499 (600)
Q Consensus 434 ~~~~~l~~~~-----~~~g~~~~a~~~~~~~~~~~~~~--p~---~~~~~~l~~~~~~~g~----~~~A~~~~~~~~~~p 499 (600)
.... +++-| .+.|.+++|-.-|-++.+.+.-. |. ..-|..|+.++.++|- .++|.- ....|
T Consensus 228 lImG-vIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLANMLmkS~iNPFDsQEAKP----yKNdP 302 (440)
T KOG1464|consen 228 LIMG-VIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSGINPFDSQEAKP----YKNDP 302 (440)
T ss_pred HHHh-HHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHHHHHHHcCCCCCcccccCC----CCCCH
Confidence 4433 34433 46788888876555555433222 21 2235566777777762 112110 11455
Q ss_pred CHHHHHHHHHHHhhhhCCHHHHHHHHHH
Q 007519 500 DHRIWGALLGACGFCEGNAEIAEHAAKR 527 (600)
Q Consensus 500 ~~~~~~~l~~~~~~~~g~~~~a~~~~~~ 527 (600)
.......++.+|. .+++.+-+++++.
T Consensus 303 EIlAMTnlv~aYQ--~NdI~eFE~Il~~ 328 (440)
T KOG1464|consen 303 EILAMTNLVAAYQ--NNDIIEFERILKS 328 (440)
T ss_pred HHHHHHHHHHHHh--cccHHHHHHHHHh
Confidence 6667778888876 5565554444443
No 273
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.92 E-value=9.2 Score=39.77 Aligned_cols=99 Identities=15% Similarity=0.171 Sum_probs=66.8
Q ss_pred HHHHHcCCChhHHHHHhhhcCC--C---ChhhHHHHHHHHHhcCChHHHHHHhhcCCCCCceeHHHHHHHHHHCCChhHH
Q 007519 49 LSGFLQNGRLSEARRLFEEMPE--R---NVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEA 123 (600)
Q Consensus 49 ~~~~~~~~~~~~A~~~~~~~~~--~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 123 (600)
++.+.+.+.+++|+...+.... + -.......+..+.-.|++++|-...-.|...+..-|..-+.-+...++....
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~I 442 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTDI 442 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccchh
Confidence 5566777788888887777664 1 1235666677777778888888888778777777777777777777766655
Q ss_pred HHHhhcCCC-CCcccHHHHHHHHHh
Q 007519 124 RKVFNSMPI-KNVISWNAMIAGYVE 147 (600)
Q Consensus 124 ~~~~~~~~~-~~~~~~~~l~~~~~~ 147 (600)
..++-.-.. .++..|..++-.+..
T Consensus 443 a~~lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 443 APYLPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred hccCCCCCcccCchHHHHHHHHHHH
Confidence 554433333 456677777766665
No 274
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=93.86 E-value=12 Score=40.98 Aligned_cols=102 Identities=14% Similarity=0.082 Sum_probs=53.9
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCChhHHH----HHHHHhcccCchHHHHHHHHHHHhhcCCCCCcchHHHHHHHHh
Q 007519 405 VMGFSHHGLANETLKVFESMLESGTHPNSVTFL----GILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLG 480 (600)
Q Consensus 405 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~----~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 480 (600)
++.--++|.+.+|+.+ ..|+...+. .....+...+.+++|.-.|+..-+ ..--+.+|.
T Consensus 915 ~n~I~kh~Ly~~aL~l--------y~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk----------lekAl~a~~ 976 (1265)
T KOG1920|consen 915 KNYIKKHGLYDEALAL--------YKPDSEKQKVIYEAYADHLREELMSDEAALMYERCGK----------LEKALKAYK 976 (1265)
T ss_pred HHHHHhcccchhhhhe--------eccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc----------HHHHHHHHH
Confidence 3333444445554444 345554443 334445556677777666665432 223466778
Q ss_pred hcCChHHHHHHHHhCCCCCCHHH--HHHHHHHHhhhhCCHHHHHHHH
Q 007519 481 RAGKIKEAEEFVLRLPFEPDHRI--WGALLGACGFCEGNAEIAEHAA 525 (600)
Q Consensus 481 ~~g~~~~A~~~~~~~~~~p~~~~--~~~l~~~~~~~~g~~~~a~~~~ 525 (600)
.+|+|.+|+.+..++....+... -..+...+. ..++.-+|-++.
T Consensus 977 ~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~-e~~kh~eAa~il 1022 (1265)
T KOG1920|consen 977 ECGDWREALSLAAQLSEGKDELVILAEELVSRLV-EQRKHYEAAKIL 1022 (1265)
T ss_pred HhccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHH-HcccchhHHHHH
Confidence 88888888888877653333322 134444444 444444443333
No 275
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=93.82 E-value=0.33 Score=40.88 Aligned_cols=128 Identities=15% Similarity=0.048 Sum_probs=81.3
Q ss_pred HHHhcccCchHHHHHHHHHHHhhcCCCCC---cchHHHHHHHHhhcCChHHHHHHHHhCC-CCCCH-HHHHHHHHHHhhh
Q 007519 440 LSACSHAGLVSRGWELFNAMFDVYKIQPG---PEHYVSMINLLGRAGKIKEAEEFVLRLP-FEPDH-RIWGALLGACGFC 514 (600)
Q Consensus 440 ~~~~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~-~~~~~l~~~~~~~ 514 (600)
..-+...|++++|..-|..++....-.|. ...|..-+.++.+.+.++.|.+-..+.. +.|.. ..+..-..+|- +
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeaye-k 180 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYE-K 180 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHH-h
Confidence 34466789999999999998875222221 3355566677888999999988876653 66643 23333344566 7
Q ss_pred hCCHHHHHHHHHHHHhhCCCCCCcHHHHhHHHHhhCCcHHHHH--HHHHHhhcCCc
Q 007519 515 EGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHK--LRMDMGLKGVR 568 (600)
Q Consensus 515 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~--~~~~~~~~~~~ 568 (600)
...+++|+.-|+++++.+|....+-...++.--......+..+ +...+++.|.-
T Consensus 181 ~ek~eealeDyKki~E~dPs~~ear~~i~rl~~~i~ernEkmKee~m~kLKdlGN~ 236 (271)
T KOG4234|consen 181 MEKYEEALEDYKKILESDPSRREAREAIARLPPKINERNEKMKEEMMEKLKDLGNF 236 (271)
T ss_pred hhhHHHHHHHHHHHHHhCcchHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 7889999999999999999655444444433322222233333 55555665544
No 276
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=93.72 E-value=1.6 Score=38.71 Aligned_cols=187 Identities=12% Similarity=0.091 Sum_probs=116.0
Q ss_pred cCChHHHHHHHhcCC--C-----CChhhHHHHHHHHHhcCChHHHHHHHHHHHHc---CC--CCChhHHHHHHHHhcccC
Q 007519 380 CGVIDNAYNIFSNMV--S-----RDLVSWNSMVMGFSHHGLANETLKVFESMLES---GT--HPNSVTFLGILSACSHAG 447 (600)
Q Consensus 380 ~~~~~~A~~~~~~~~--~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~---~~--~p~~~~~~~l~~~~~~~g 447 (600)
..++++|+.-|+++. . ........++....+.|++++.++.+.++... .+ .-+..+.+++++.-+...
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~ 119 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSK 119 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhh
Confidence 345677777776654 1 12234455677788888888888877777542 11 234456777777666666
Q ss_pred chHHHHHHHHHHHhhcCCCCC----cchHHHHHHHHhhcCChHHHHHHHHhCC-------CCCC-------HHHHHHHHH
Q 007519 448 LVSRGWELFNAMFDVYKIQPG----PEHYVSMINLLGRAGKIKEAEEFVLRLP-------FEPD-------HRIWGALLG 509 (600)
Q Consensus 448 ~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~p~-------~~~~~~l~~ 509 (600)
+.+.-.++++.-.+...-..+ -.+-..|...|...|.+.+-.+++.++. -..| ...|..-+.
T Consensus 120 ~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQ 199 (440)
T KOG1464|consen 120 NMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQ 199 (440)
T ss_pred hhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhh
Confidence 666665555544332111122 3344568888888888888888887762 0111 233444455
Q ss_pred HHhhhhCCHHHHHHHHHHHHhhCCC--CCCcHHHH----hHHHHhhCCcHHHHH-HHHHHhhcCC
Q 007519 510 ACGFCEGNAEIAEHAAKRLLELDPL--NAPAHVVL----CNIYAASGRHVEEHK-LRMDMGLKGV 567 (600)
Q Consensus 510 ~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l----~~~~~~~g~~~~A~~-~~~~~~~~~~ 567 (600)
.|. .+.+...-..+|++++.+..- +|.+...+ +....+.|.|++|.. +++..+...-
T Consensus 200 mYT-~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDE 263 (440)
T KOG1464|consen 200 MYT-EQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDE 263 (440)
T ss_pred hhh-hhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhcccc
Confidence 566 777778888899998885532 45443332 445677899999988 8888775443
No 277
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=93.45 E-value=5.4 Score=35.55 Aligned_cols=191 Identities=21% Similarity=0.176 Sum_probs=120.5
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhcCC-----CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHH
Q 007519 367 LILENCLISMYAKCGVIDNAYNIFSNMV-----SRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILS 441 (600)
Q Consensus 367 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~ 441 (600)
...+......+...+++..+...+.... ......+......+...+++..+...+.........+ .........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 137 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLAL 137 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHH
Confidence 3455566667777777777777666543 3344556666666777777788888888777643222 122222222
Q ss_pred -HhcccCchHHHHHHHHHHHhhcCCCC----CcchHHHHHHHHhhcCChHHHHHHHHhCC-CCCC--HHHHHHHHHHHhh
Q 007519 442 -ACSHAGLVSRGWELFNAMFDVYKIQP----GPEHYVSMINLLGRAGKIKEAEEFVLRLP-FEPD--HRIWGALLGACGF 513 (600)
Q Consensus 442 -~~~~~g~~~~a~~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~--~~~~~~l~~~~~~ 513 (600)
.+...|+++.+...+.+... ..| ....+......+...++.+.|...+.+.. ..++ ...+..+...+.
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~- 213 (291)
T COG0457 138 GALYELGDYEEALELYEKALE---LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYL- 213 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHh---cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHH-
Confidence 56777888888888887743 233 23344444445667778888888877764 3333 455555666666
Q ss_pred hhCCHHHHHHHHHHHHhhCCCCCCcHHHHhHHHHhhCCcHHHHHHHHHH
Q 007519 514 CEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDM 562 (600)
Q Consensus 514 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 562 (600)
..++.+.+...+..+....|.....+..+...+...|.++++...+...
T Consensus 214 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (291)
T COG0457 214 KLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKA 262 (291)
T ss_pred HcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHH
Confidence 6777888888888888887754555666666666666677777755443
No 278
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.42 E-value=2.7 Score=35.59 Aligned_cols=114 Identities=11% Similarity=0.034 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHcCCCCChhHHH--HHHHHhcccCchHHHHHHHHHHHhhcCCCCC----cchHHHHHHHHhhcCChHHHH
Q 007519 416 ETLKVFESMLESGTHPNSVTFL--GILSACSHAGLVSRGWELFNAMFDVYKIQPG----PEHYVSMINLLGRAGKIKEAE 489 (600)
Q Consensus 416 ~a~~~~~~m~~~~~~p~~~~~~--~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~ 489 (600)
+.....+++....-......+. .+...+...|++++|...++..... ..| ..+--.|.+.....|.+|+|+
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL 146 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAAL 146 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 4445555555432111122222 2335677888999999888877643 112 222334667788999999999
Q ss_pred HHHHhCCCCC-CHHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCC
Q 007519 490 EFVLRLPFEP-DHRIWGALLGACGFCEGNAEIAEHAAKRLLELDP 533 (600)
Q Consensus 490 ~~~~~~~~~p-~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p 533 (600)
..++....+. .+.....-...+. ..|+..+|...|+++++..+
T Consensus 147 ~~L~t~~~~~w~~~~~elrGDill-~kg~k~~Ar~ay~kAl~~~~ 190 (207)
T COG2976 147 KTLDTIKEESWAAIVAELRGDILL-AKGDKQEARAAYEKALESDA 190 (207)
T ss_pred HHHhccccccHHHHHHHHhhhHHH-HcCchHHHHHHHHHHHHccC
Confidence 9998876221 2222333444667 88999999999999998775
No 279
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=93.39 E-value=3.6 Score=33.43 Aligned_cols=38 Identities=21% Similarity=0.114 Sum_probs=15.5
Q ss_pred HHHHHHcCCChhHHHHHhhhcCC---CChhhHHHHHHHHHh
Q 007519 48 MLSGFLQNGRLSEARRLFEEMPE---RNVVSWTAMICGLAD 85 (600)
Q Consensus 48 l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~ 85 (600)
++..+...+.+.....+++.+.. .++..++.++..|++
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~ 53 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESALKLNSENPALQTKLIELYAK 53 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHH
Confidence 34444434444444444444332 122344444444443
No 280
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=93.37 E-value=0.26 Score=38.21 Aligned_cols=58 Identities=22% Similarity=0.147 Sum_probs=51.7
Q ss_pred HHhhhhCCHHHHHHHHHHHHhhCCCCCCcHHHHhHHHHhhCCcHHHHH-HHHHHhhcCCc
Q 007519 510 ACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHK-LRMDMGLKGVR 568 (600)
Q Consensus 510 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~-~~~~~~~~~~~ 568 (600)
+.. ..|+.+.|++.|.+++.+-|.++.+|+.-+.++.-+|+.++|.. +-+.++-.|-+
T Consensus 52 ala-E~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~ 110 (175)
T KOG4555|consen 52 ALA-EAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ 110 (175)
T ss_pred HHH-hccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc
Confidence 345 78999999999999999999999999999999999999999999 77777666654
No 281
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.23 E-value=2.1 Score=35.15 Aligned_cols=108 Identities=20% Similarity=0.187 Sum_probs=61.7
Q ss_pred cccCchHHHHHHHHHHHhhcCCCCC-cchHHHHHHHHhhcCChHHHHHHHHhCC-CCCCHHHHHHHHHHHhhhhCCHHHH
Q 007519 444 SHAGLVSRGWELFNAMFDVYKIQPG-PEHYVSMINLLGRAGKIKEAEEFVLRLP-FEPDHRIWGALLGACGFCEGNAEIA 521 (600)
Q Consensus 444 ~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l~~~~~~~~g~~~~a 521 (600)
...++.+.+..++..+.- +.|. +..-..-+..+...|+|.+|..+++++. ..|....-..++..|....||.+ =
T Consensus 21 l~~~~~~D~e~lL~ALrv---LRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~~-W 96 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRV---LRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDPS-W 96 (160)
T ss_pred HccCChHHHHHHHHHHHH---hCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCChH-H
Confidence 455677777777777763 4564 3333345566778888888888888876 34445555566666663444432 2
Q ss_pred HHHHHHHHhhCCCCCCcHHHHhHHHHhhCCcHHHHH
Q 007519 522 EHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHK 557 (600)
Q Consensus 522 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 557 (600)
..+..++++..+ ++.+... ...+....+...|..
T Consensus 97 r~~A~evle~~~-d~~a~~L-v~~Ll~~~~~~~a~~ 130 (160)
T PF09613_consen 97 RRYADEVLESGA-DPDARAL-VRALLARADLEPAHE 130 (160)
T ss_pred HHHHHHHHhcCC-ChHHHHH-HHHHHHhccccchhh
Confidence 233444555555 4444433 344444444444444
No 282
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=93.02 E-value=1.3 Score=37.51 Aligned_cols=94 Identities=16% Similarity=0.113 Sum_probs=58.6
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCChh-----HHHHHHHHhcccCchHHHHHHHHHHHhhcCCCCC-cchHHHHHHH
Q 007519 405 VMGFSHHGLANETLKVFESMLESGTHPNSV-----TFLGILSACSHAGLVSRGWELFNAMFDVYKIQPG-PEHYVSMINL 478 (600)
Q Consensus 405 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-----~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~ 478 (600)
.+-+...|++++|..-|...... +++... .|..-..++.+.+.++.|+.-..+.++ +.|+ ...+..-+.+
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale~-cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaie---l~pty~kAl~RRAea 177 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALES-CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIE---LNPTYEKALERRAEA 177 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHHh-CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHh---cCchhHHHHHHHHHH
Confidence 34467788888888888887764 344332 333334456677777777776666654 3453 3334444567
Q ss_pred HhhcCChHHHHHHHHhCC-CCCCHH
Q 007519 479 LGRAGKIKEAEEFVLRLP-FEPDHR 502 (600)
Q Consensus 479 ~~~~g~~~~A~~~~~~~~-~~p~~~ 502 (600)
|.+...+++|++=|.++. ..|...
T Consensus 178 yek~ek~eealeDyKki~E~dPs~~ 202 (271)
T KOG4234|consen 178 YEKMEKYEEALEDYKKILESDPSRR 202 (271)
T ss_pred HHhhhhHHHHHHHHHHHHHhCcchH
Confidence 777788888887777764 455433
No 283
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=92.89 E-value=3.8 Score=32.23 Aligned_cols=61 Identities=13% Similarity=0.156 Sum_probs=39.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccCchHHHHHHHHHHHhh
Q 007519 401 WNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDV 462 (600)
Q Consensus 401 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 462 (600)
....+..+..+|.-++-.+++.++.+. -.+++.....+..+|.+.|+..++.+++.++.+.
T Consensus 89 vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek 149 (161)
T PF09205_consen 89 VDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEK 149 (161)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 445566777778777777777777653 3667777777778888888888888888877765
No 284
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=92.82 E-value=0.24 Score=28.37 Aligned_cols=31 Identities=26% Similarity=0.145 Sum_probs=23.4
Q ss_pred HHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCC
Q 007519 503 IWGALLGACGFCEGNAEIAEHAAKRLLELDPL 534 (600)
Q Consensus 503 ~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~ 534 (600)
+|..+...+. ..|+.++|+..++++++++|+
T Consensus 3 ~~~~lg~~y~-~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 3 AYYNLGKIYE-QLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHH-HTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHH-HcCCHHHHHHHHHHHHhhCCC
Confidence 4555666666 788888888888888888773
No 285
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=92.66 E-value=0.019 Score=47.21 Aligned_cols=128 Identities=13% Similarity=0.131 Sum_probs=74.7
Q ss_pred HHHHHhcccchhhhHHHHHHHhhhcCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHH
Q 007519 338 LFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANET 417 (600)
Q Consensus 338 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 417 (600)
++..+.+.+.+.....+++.+.+.+...+....+.++..|++.++.++..++++.... .-...++..|.+.|.++++
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~a 89 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEEA 89 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHHH
Confidence 3455566666777777777766665556677778888888888777777777774332 2234456666677777777
Q ss_pred HHHHHHHHHcCCCCChhHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCCCcchHHHHHHHHhhcCC
Q 007519 418 LKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGK 484 (600)
Q Consensus 418 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 484 (600)
.-++.++.... ..+..+...++++.|.++..+ .+++..|..++..+...+.
T Consensus 90 ~~Ly~~~~~~~---------~al~i~~~~~~~~~a~e~~~~-------~~~~~l~~~l~~~~l~~~~ 140 (143)
T PF00637_consen 90 VYLYSKLGNHD---------EALEILHKLKDYEEAIEYAKK-------VDDPELWEQLLKYCLDSKP 140 (143)
T ss_dssp HHHHHCCTTHT---------TCSSTSSSTHCSCCCTTTGGG-------CSSSHHHHHHHHHHCTSTC
T ss_pred HHHHHHcccHH---------HHHHHHHHHccHHHHHHHHHh-------cCcHHHHHHHHHHHHhcCc
Confidence 77666543211 111113344555555532221 2456677777777666554
No 286
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=91.74 E-value=1.1 Score=36.83 Aligned_cols=81 Identities=21% Similarity=0.159 Sum_probs=57.2
Q ss_pred hHHHHHHH---HhhcCChHHHHHHHHhCC-CCCCHHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCCCcHHHHhHHH
Q 007519 471 HYVSMINL---LGRAGKIKEAEEFVLRLP-FEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIY 546 (600)
Q Consensus 471 ~~~~l~~~---~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 546 (600)
+.+.|+.. -.+.++.+++..+++.+. +.|.......+-.......|++.+|+++++.+.+-.|..+..--.++.++
T Consensus 9 iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL 88 (160)
T PF09613_consen 9 IVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCL 88 (160)
T ss_pred HHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHH
Confidence 44444443 357789999999999986 77877766665554333889999999999998887776665555555555
Q ss_pred HhhCC
Q 007519 547 AASGR 551 (600)
Q Consensus 547 ~~~g~ 551 (600)
...|+
T Consensus 89 ~~~~D 93 (160)
T PF09613_consen 89 YALGD 93 (160)
T ss_pred HHcCC
Confidence 55554
No 287
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=91.57 E-value=1.7 Score=38.93 Aligned_cols=89 Identities=11% Similarity=0.059 Sum_probs=60.4
Q ss_pred CChhhHHHHHHHHHh-----CCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhcccc----------------hhhhHH
Q 007519 295 RDAVAWTAMISGLVQ-----NELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATAN----------------IDLGRQ 353 (600)
Q Consensus 295 ~~~~~~~~li~~~~~-----~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~----------------~~~a~~ 353 (600)
+|..+|-..+..+.. .+..+-....++.|.+-|+.-|..+|..|+..+-+..- -+-+..
T Consensus 65 RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~ 144 (406)
T KOG3941|consen 65 RDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIK 144 (406)
T ss_pred ccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHH
Confidence 455555555555533 24455556667777788888888888888877654321 233567
Q ss_pred HHHHHhhhcCCCchhHHHHHHHHHHhcCCh
Q 007519 354 IHCVLMKTESESDLILENCLISMYAKCGVI 383 (600)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 383 (600)
+++.|...|+.||..+-..|++++.+.+-.
T Consensus 145 vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 145 VLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred HHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 788888888888888888888888776653
No 288
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=91.50 E-value=1.3 Score=35.69 Aligned_cols=95 Identities=17% Similarity=0.157 Sum_probs=54.5
Q ss_pred hHHHHHHHH---hhcCChHHHHHHHHhCC-CCCCHHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCCCcHHHHhHHH
Q 007519 471 HYVSMINLL---GRAGKIKEAEEFVLRLP-FEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIY 546 (600)
Q Consensus 471 ~~~~l~~~~---~~~g~~~~A~~~~~~~~-~~p~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 546 (600)
+.+.|++.. ...++++++..+++.+. +.|+......+-.......|++.+|+++++.+.+-.|..+..--.++..+
T Consensus 9 iv~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL 88 (153)
T TIGR02561 9 LLGGLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCL 88 (153)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHH
Confidence 344444433 35778888888887775 56665555444443322778888888888887776664444444444444
Q ss_pred HhhCCcHHHHH-HHHHHhhcCC
Q 007519 547 AASGRHVEEHK-LRMDMGLKGV 567 (600)
Q Consensus 547 ~~~g~~~~A~~-~~~~~~~~~~ 567 (600)
.-.|| ..++ .-.++.+.+-
T Consensus 89 ~al~D--p~Wr~~A~~~le~~~ 108 (153)
T TIGR02561 89 NAKGD--AEWHVHADEVLARDA 108 (153)
T ss_pred HhcCC--hHHHHHHHHHHHhCC
Confidence 45555 3344 3334444443
No 289
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=91.31 E-value=0.18 Score=29.00 Aligned_cols=24 Identities=33% Similarity=0.483 Sum_probs=18.9
Q ss_pred CC-CcchHHHHHHHHhhcCChHHHH
Q 007519 466 QP-GPEHYVSMINLLGRAGKIKEAE 489 (600)
Q Consensus 466 ~p-~~~~~~~l~~~~~~~g~~~~A~ 489 (600)
.| +...|..|+.+|...|++++|+
T Consensus 9 ~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 9 NPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 56 5778888888888888888775
No 290
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=91.24 E-value=0.4 Score=28.00 Aligned_cols=25 Identities=20% Similarity=0.060 Sum_probs=13.0
Q ss_pred HHHHHHHHhhhhCCHHHHHHHHHHHH
Q 007519 504 WGALLGACGFCEGNAEIAEHAAKRLL 529 (600)
Q Consensus 504 ~~~l~~~~~~~~g~~~~a~~~~~~~~ 529 (600)
|..+...+. ..|++++|+.++++++
T Consensus 2 l~~Lg~~~~-~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYR-QQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHH-HCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHH
Confidence 344555555 5555666665555544
No 291
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.16 E-value=22 Score=37.25 Aligned_cols=72 Identities=17% Similarity=0.052 Sum_probs=35.8
Q ss_pred HHHHhcCCHhHHHHHHHhccc--C---CchhHHHHHHHHHhcCChhHHHHHHccCCCCCcchHHHHHHHHHhcCChh
Q 007519 143 AGYVECCMMGEAIVLFEEMEE--R---NVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHK 214 (600)
Q Consensus 143 ~~~~~~~~~~~A~~~~~~~~~--~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 214 (600)
+-+.+.+.+++|....+.... + -.......|..+.-.|++++|-...-.|...+..-|...+..+...++..
T Consensus 364 ~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~ 440 (846)
T KOG2066|consen 364 DWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLT 440 (846)
T ss_pred HHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccc
Confidence 334444555555555444332 1 11234445555555566666665555555555555555555555554443
No 292
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=91.14 E-value=1 Score=38.39 Aligned_cols=96 Identities=15% Similarity=0.219 Sum_probs=62.8
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHccCCCCC------cchHHHHHHHHHhcCChhHHHHHHHHHHhhhcCCCCCChhhHHH
Q 007519 167 VTWTSMISGYCRAGEVEEGYCLFRRMPRKN------VVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNS 240 (600)
Q Consensus 167 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 240 (600)
..+..+.+.|++.|+.+.|.+.|.++.+.. ...+-.+|+.....+++..+...+.+.....+.+..++...-..
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 456778888999999999999998887632 23567788888888999999888888887643333322222111
Q ss_pred HHHH--HHhcCChhhHHHHhcccC
Q 007519 241 MING--YIRFGRLEEAQNLFDTVP 262 (600)
Q Consensus 241 l~~~--~~~~~~~~~a~~~~~~~~ 262 (600)
+..+ +...+++..|-+.|-...
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHccC
Confidence 2221 224566666666655554
No 293
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=91.12 E-value=0.62 Score=42.77 Aligned_cols=91 Identities=15% Similarity=0.167 Sum_probs=57.7
Q ss_pred HhcccCchHHHHHHHHHHHhhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHhCC-CC-CCHHHHHHHHHHHhhhhCCH
Q 007519 442 ACSHAGLVSRGWELFNAMFDVYKIQP-GPEHYVSMINLLGRAGKIKEAEEFVLRLP-FE-PDHRIWGALLGACGFCEGNA 518 (600)
Q Consensus 442 ~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~-p~~~~~~~l~~~~~~~~g~~ 518 (600)
-|.+.|.+++|+.+|...+. ..| ++..+..-+.+|.+..++..|+.-.+... +. --...|..-+.+-. ..|..
T Consensus 106 ~yFKQgKy~EAIDCYs~~ia---~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~-~Lg~~ 181 (536)
T KOG4648|consen 106 TYFKQGKYEEAIDCYSTAIA---VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARE-SLGNN 181 (536)
T ss_pred hhhhccchhHHHHHhhhhhc---cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHH-HHhhH
Confidence 35567777777777776653 456 66677777777777777776665554443 11 11123333333434 66788
Q ss_pred HHHHHHHHHHHhhCCCCC
Q 007519 519 EIAEHAAKRLLELDPLNA 536 (600)
Q Consensus 519 ~~a~~~~~~~~~~~p~~~ 536 (600)
++|.+-++..+++.|++.
T Consensus 182 ~EAKkD~E~vL~LEP~~~ 199 (536)
T KOG4648|consen 182 MEAKKDCETVLALEPKNI 199 (536)
T ss_pred HHHHHhHHHHHhhCcccH
Confidence 888888888888888643
No 294
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=90.96 E-value=4.4 Score=34.55 Aligned_cols=94 Identities=11% Similarity=-0.038 Sum_probs=48.9
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChh--HHHHHHHHHhcccchhhhHHHHHHHhhhcCCCc-------hhH
Q 007519 299 AWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNA--TFSVLFGAAGATANIDLGRQIHCVLMKTESESD-------LIL 369 (600)
Q Consensus 299 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-------~~~ 369 (600)
.+..+...|++.|+.+.|++.|.++.+....|... .+..++..+.-.+++..+......+...-.... ..+
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 45566666677777777777777766654333322 344455555556666666555554433222111 111
Q ss_pred HHHHHHHHHhcCChHHHHHHHhcCC
Q 007519 370 ENCLISMYAKCGVIDNAYNIFSNMV 394 (600)
Q Consensus 370 ~~~l~~~~~~~~~~~~A~~~~~~~~ 394 (600)
|..+ .+...+++..|-+.|-...
T Consensus 118 ~~gL--~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 118 YEGL--ANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHH--HHHHhchHHHHHHHHHccC
Confidence 2222 2234567777766665554
No 295
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=90.75 E-value=1 Score=27.74 Aligned_cols=27 Identities=15% Similarity=0.465 Sum_probs=15.1
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHH
Q 007519 400 SWNSMVMGFSHHGLANETLKVFESMLE 426 (600)
Q Consensus 400 ~~~~l~~~~~~~~~~~~a~~~~~~m~~ 426 (600)
+|..+..+|...|++++|+++|++..+
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~ 29 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALA 29 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344455555555555555555555555
No 296
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=90.53 E-value=19 Score=35.51 Aligned_cols=170 Identities=8% Similarity=-0.039 Sum_probs=80.4
Q ss_pred HHHHHcCCChhHHHHHhhhcCC--CChhhHHHHHHHHHhcCChHHHHHHhhcCCCCCceeHHHHHHHHHHCCChhHHHHH
Q 007519 49 LSGFLQNGRLSEARRLFEEMPE--RNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKV 126 (600)
Q Consensus 49 ~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 126 (600)
++++...| +.++..+-.... ++...+..-..++....+......+.+.+..++.......+.++...++......+
T Consensus 45 LdgL~~~G--~~a~~~L~~aL~~d~~~ev~~~aa~al~~~~~~~~~~~L~~~L~d~~~~vr~aaa~ALg~i~~~~a~~~L 122 (410)
T TIGR02270 45 VDGLVLAG--KAATELLVSALAEADEPGRVACAALALLAQEDALDLRSVLAVLQAGPEGLCAGIQAALGWLGGRQAEPWL 122 (410)
T ss_pred HHHHHHhh--HhHHHHHHHHHhhCCChhHHHHHHHHHhccCChHHHHHHHHHhcCCCHHHHHHHHHHHhcCCchHHHHHH
Confidence 45555555 445555544442 33334433333333222222234444444445555666666666666666655555
Q ss_pred hhcCCCCCcccHHHHHHHHHhcCCHhHHHHHHHhcccCCchhHHHHHHHHHhcCChhHHHHHHccCCCCCcchHHHHHHH
Q 007519 127 FNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGG 206 (600)
Q Consensus 127 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~ 206 (600)
..-...+++......+.++...+. +-...+...+..+|..+...-+.++...++.+..-.+..-....|...-..-+.+
T Consensus 123 ~~~L~~~~p~vR~aal~al~~r~~-~~~~~L~~~L~d~d~~Vra~A~raLG~l~~~~a~~~L~~al~d~~~~VR~aA~~a 201 (410)
T TIGR02270 123 EPLLAASEPPGRAIGLAALGAHRH-DPGPALEAALTHEDALVRAAALRALGELPRRLSESTLRLYLRDSDPEVRFAALEA 201 (410)
T ss_pred HHHhcCCChHHHHHHHHHHHhhcc-ChHHHHHHHhcCCCHHHHHHHHHHHHhhccccchHHHHHHHcCCCHHHHHHHHHH
Confidence 555545555555555555554331 1122222223345555555555555555544333332222334455555555555
Q ss_pred HHhcCChhHHHHHHHH
Q 007519 207 FAWNGFHKESLLLFIE 222 (600)
Q Consensus 207 ~~~~~~~~~a~~~~~~ 222 (600)
....|. ..|...+..
T Consensus 202 l~~lG~-~~A~~~l~~ 216 (410)
T TIGR02270 202 GLLAGS-RLAWGVCRR 216 (410)
T ss_pred HHHcCC-HhHHHHHHH
Confidence 555555 444444443
No 297
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=90.42 E-value=2.9 Score=40.52 Aligned_cols=122 Identities=14% Similarity=0.091 Sum_probs=61.4
Q ss_pred HhcCChHHHHHHHH-HHHHcCCCCChhHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCCCcchHHHHHHHHhhcCChHH
Q 007519 409 SHHGLANETLKVFE-SMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKE 487 (600)
Q Consensus 409 ~~~~~~~~a~~~~~-~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 487 (600)
...|+.-.|-+-+. .+....-.|+.....+ ......|+++.+.+.+..... -+.....+..++++...+.|++++
T Consensus 300 ~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~--~i~~~lg~ye~~~~~~s~~~~--~~~s~~~~~~~~~r~~~~l~r~~~ 375 (831)
T PRK15180 300 LADGDIIAASQQLFAALRNQQQDPVLIQLRS--VIFSHLGYYEQAYQDISDVEK--IIGTTDSTLRCRLRSLHGLARWRE 375 (831)
T ss_pred hhccCHHHHHHHHHHHHHhCCCCchhhHHHH--HHHHHhhhHHHHHHHhhchhh--hhcCCchHHHHHHHhhhchhhHHH
Confidence 34555555444333 3333222333332222 234556677776666655543 223345566666666666777777
Q ss_pred HHHHHHhCC--CCCCHHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCC
Q 007519 488 AEEFVLRLP--FEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLN 535 (600)
Q Consensus 488 A~~~~~~~~--~~p~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~ 535 (600)
|...-.-|. .-.++.+......+.. ..|-++++...+++.+.++|..
T Consensus 376 a~s~a~~~l~~eie~~ei~~iaa~sa~-~l~~~d~~~~~wk~~~~~~~~~ 424 (831)
T PRK15180 376 ALSTAEMMLSNEIEDEEVLTVAAGSAD-ALQLFDKSYHYWKRVLLLNPET 424 (831)
T ss_pred HHHHHHHHhccccCChhheeeecccHH-HHhHHHHHHHHHHHHhccCChh
Confidence 766665553 1112233332233333 4566666777777776666543
No 298
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=90.41 E-value=0.44 Score=27.84 Aligned_cols=24 Identities=13% Similarity=0.202 Sum_probs=20.0
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHh
Q 007519 471 HYVSMINLLGRAGKIKEAEEFVLR 494 (600)
Q Consensus 471 ~~~~l~~~~~~~g~~~~A~~~~~~ 494 (600)
++..|+.+|.+.|++++|++++++
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHH
Confidence 467889999999999999999877
No 299
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=89.90 E-value=21 Score=35.15 Aligned_cols=185 Identities=8% Similarity=-0.052 Sum_probs=73.2
Q ss_pred HHHHHhcccCCchhHHHHHHHHHhcCChhHHHHHHccCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhhhcCCCCCC
Q 007519 155 IVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCN 234 (600)
Q Consensus 155 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 234 (600)
..+++.+..++..+....+.++.+.+.......+...+..++.......+.++...+. .+...+....+ .+|
T Consensus 89 ~~L~~~L~d~~~~vr~aaa~ALg~i~~~~a~~~L~~~L~~~~p~vR~aal~al~~r~~--~~~~~L~~~L~------d~d 160 (410)
T TIGR02270 89 RSVLAVLQAGPEGLCAGIQAALGWLGGRQAEPWLEPLLAASEPPGRAIGLAALGAHRH--DPGPALEAALT------HED 160 (410)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHhcCCchHHHHHHHHHhcCCChHHHHHHHHHHHhhcc--ChHHHHHHHhc------CCC
Confidence 3333333344444445555555555444444444333333343333333333333221 12222222221 333
Q ss_pred hhhHHHHHHHHHhcCChhhHHHHhcccCCCCchhHHHHHHHHHhcCChHHHHHHHhh-CCCCChhhHHHHHHHHHhCCCh
Q 007519 235 VQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHN-MPDRDAVAWTAMISGLVQNELF 313 (600)
Q Consensus 235 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~-~~~~~~~~~~~li~~~~~~g~~ 313 (600)
...-...+.++...+..+..-.+..-....++.+-..-+.+....|. .+|...+.. ...++....-.+...+... ..
T Consensus 161 ~~Vra~A~raLG~l~~~~a~~~L~~al~d~~~~VR~aA~~al~~lG~-~~A~~~l~~~~~~~g~~~~~~l~~~lal~-~~ 238 (410)
T TIGR02270 161 ALVRAAALRALGELPRRLSESTLRLYLRDSDPEVRFAALEAGLLAGS-RLAWGVCRRFQVLEGGPHRQRLLVLLAVA-GG 238 (410)
T ss_pred HHHHHHHHHHHHhhccccchHHHHHHHcCCCHHHHHHHHHHHHHcCC-HhHHHHHHHHHhccCccHHHHHHHHHHhC-Cc
Confidence 44444444444444443332222222234444455555555555554 344433333 2223333222222222222 22
Q ss_pred hHHHHHHHHHHHCCCCCChhHHHHHHHHHhcccchhhhHHH
Q 007519 314 VEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQI 354 (600)
Q Consensus 314 ~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~ 354 (600)
++++..+..+.+. ++ +-...+.++...|+...+..+
T Consensus 239 ~~a~~~L~~ll~d---~~--vr~~a~~AlG~lg~p~av~~L 274 (410)
T TIGR02270 239 PDAQAWLRELLQA---AA--TRREALRAVGLVGDVEAAPWC 274 (410)
T ss_pred hhHHHHHHHHhcC---hh--hHHHHHHHHHHcCCcchHHHH
Confidence 2555555544432 11 334444455555554443333
No 300
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=89.85 E-value=0.81 Score=37.47 Aligned_cols=86 Identities=14% Similarity=0.192 Sum_probs=58.1
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHhcCChhhHHHHhcccCCCCchhHHHHHHHHHhcCCh
Q 007519 203 MIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQV 282 (600)
Q Consensus 203 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 282 (600)
++..+.+.+.++....+++.+... +...+....+.++..|++.++.++...+++.... .-...++..+.+.|.+
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~---~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~ 86 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKE---NKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLY 86 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHT---STC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhc---ccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchH
Confidence 466667778888888888888854 4445677888899999999888888888884432 3334556666666666
Q ss_pred HHHHHHHhhCCC
Q 007519 283 SNAYYLFHNMPD 294 (600)
Q Consensus 283 ~~A~~~~~~~~~ 294 (600)
++|..++.++..
T Consensus 87 ~~a~~Ly~~~~~ 98 (143)
T PF00637_consen 87 EEAVYLYSKLGN 98 (143)
T ss_dssp HHHHHHHHCCTT
T ss_pred HHHHHHHHHccc
Confidence 666666655443
No 301
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=89.59 E-value=3.8 Score=36.84 Aligned_cols=98 Identities=17% Similarity=0.155 Sum_probs=69.2
Q ss_pred HHHHhcCC--CCChhhHHHHHHHHHh-----cCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccC------------
Q 007519 387 YNIFSNMV--SRDLVSWNSMVMGFSH-----HGLANETLKVFESMLESGTHPNSVTFLGILSACSHAG------------ 447 (600)
Q Consensus 387 ~~~~~~~~--~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g------------ 447 (600)
+..|.... +.|-.+|-..+..+.. .+.++-....++.|.+.|+.-|..+|+.|+..+-+..
T Consensus 54 e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~ 133 (406)
T KOG3941|consen 54 EKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFL 133 (406)
T ss_pred hhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHh
Confidence 44455555 4566677777766654 3566767777888888888888888888887764432
Q ss_pred ----chHHHHHHHHHHHhhcCCCCCcchHHHHHHHHhhcCCh
Q 007519 448 ----LVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKI 485 (600)
Q Consensus 448 ----~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 485 (600)
+-+=++.++++|.. +|+.||..+-..|+.++++.+..
T Consensus 134 HYP~QQ~C~I~vLeqME~-hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 134 HYPQQQNCAIKVLEQMEW-HGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred hCchhhhHHHHHHHHHHH-cCCCCchHHHHHHHHHhcccccc
Confidence 22336778888876 48888888888888888877743
No 302
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=89.39 E-value=1.7 Score=39.66 Aligned_cols=59 Identities=22% Similarity=0.276 Sum_probs=35.0
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHhhhhCCHHHHHHHHHHHHh
Q 007519 471 HYVSMINLLGRAGKIKEAEEFVLRLP-FEP-DHRIWGALLGACGFCEGNAEIAEHAAKRLLE 530 (600)
Q Consensus 471 ~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~ 530 (600)
++..+++.+...|+++.+.+.++++. ..| +...|..++.++. ..|+...|+..|+++.+
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~-~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYL-VNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHH-HcCCchHHHHHHHHHHH
Confidence 55556666666666666666666553 333 4555666666666 66666666666666555
No 303
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=89.35 E-value=10 Score=30.72 Aligned_cols=70 Identities=20% Similarity=0.139 Sum_probs=43.9
Q ss_pred ccCchHHHHHHHHHHHhhcCCCCC-cchHHHHHHHHhhcCChHHHHHHHHhCCCCC-CHHHHHHHHHHHhhhhCC
Q 007519 445 HAGLVSRGWELFNAMFDVYKIQPG-PEHYVSMINLLGRAGKIKEAEEFVLRLPFEP-DHRIWGALLGACGFCEGN 517 (600)
Q Consensus 445 ~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~l~~~~~~~~g~ 517 (600)
..++.+.+..++..+.- +.|+ ...-..-+..+...|+|++|.++++++...+ ....-..+...|....||
T Consensus 22 ~~~d~~D~e~lLdALrv---LrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~D 93 (153)
T TIGR02561 22 RSADPYDAQAMLDALRV---LRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGD 93 (153)
T ss_pred hcCCHHHHHHHHHHHHH---hCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCC
Confidence 46777888888877763 4563 3333334566788899999999998887444 333334455555534444
No 304
>PRK11619 lytic murein transglycosylase; Provisional
Probab=89.34 E-value=32 Score=36.39 Aligned_cols=243 Identities=7% Similarity=-0.060 Sum_probs=122.5
Q ss_pred CCChhHHHHHHHHHHHCC-CCCChh--HHHHHHHHHhcccchhhhHHHHHHHhhhcCCCchhHHHHHHHHHHhcCChHHH
Q 007519 310 NELFVEATYLFMEMRAHG-VPPLNA--TFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNA 386 (600)
Q Consensus 310 ~g~~~~a~~~~~~m~~~g-~~p~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 386 (600)
..+.+.|..++....... ..+... ....+.......+..+.+...+....... .+......-+....+.++++.+
T Consensus 254 r~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~ 331 (644)
T PRK11619 254 RQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGL 331 (644)
T ss_pred HhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHH
Confidence 455678888888764443 222221 12222222222211344444444332222 2334445555566678888888
Q ss_pred HHHHhcCCC--CChhhH-HHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccCch---HH--HHHHHHH
Q 007519 387 YNIFSNMVS--RDLVSW-NSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLV---SR--GWELFNA 458 (600)
Q Consensus 387 ~~~~~~~~~--~~~~~~-~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~---~~--a~~~~~~ 458 (600)
...+..|.. .+..-| -=+..++...|+.++|...|+.+.. .. +|-.++.+ .+.|.. .. .-.. .
T Consensus 332 ~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~---~~---~fYG~LAa-~~Lg~~~~~~~~~~~~~-~- 402 (644)
T PRK11619 332 NTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ---QR---GFYPMVAA-QRLGEEYPLKIDKAPKP-D- 402 (644)
T ss_pred HHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc---CC---CcHHHHHH-HHcCCCCCCCCCCCCch-h-
Confidence 888888752 111111 1245565667888888888888742 22 23332221 111211 00 0000 0
Q ss_pred HHhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHhhhhCCHHHHHHHHHHHHhh---CCCC
Q 007519 459 MFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLEL---DPLN 535 (600)
Q Consensus 459 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~---~p~~ 535 (600)
. .+ +. ..-..-+..+...|+...|...+..+....+......+..... ..|....++....+.... .-..
T Consensus 403 --~--~~-~~-~~~~~ra~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~A~-~~g~~~~ai~~~~~~~~~~~~~~rf 475 (644)
T PRK11619 403 --S--AL-TQ-GPEMARVRELMYWNMDNTARSEWANLVASRSKTEQAQLARYAF-NQQWWDLSVQATIAGKLWDHLEERF 475 (644)
T ss_pred --h--hh-cc-ChHHHHHHHHHHCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-HCCCHHHHHHHHhhchhHHHHHHhC
Confidence 0 00 00 0112234556778999999888877653445555544444444 788888888777654331 1113
Q ss_pred CCcHHHHhHHHHhhCCcHHHHHHHHHHhhcCCccC
Q 007519 536 APAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKV 570 (600)
Q Consensus 536 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 570 (600)
|..|...+..+.+.-.++.++-.--...|.++.+.
T Consensus 476 p~~~~~~~~~~a~~~~v~~~lv~ai~rqES~f~p~ 510 (644)
T PRK11619 476 PLAWNDEFRRYTSGKGIPQSYAMAIARQESAWNPK 510 (644)
T ss_pred CcchHHHHHHHHHHcCCCHHHHHHHHHHhcCCCCC
Confidence 44566666666666666666643333345555543
No 305
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.32 E-value=8.5 Score=33.75 Aligned_cols=23 Identities=9% Similarity=-0.185 Sum_probs=17.9
Q ss_pred hhCCHHHHHHHHHHHHhhCCCCC
Q 007519 514 CEGNAEIAEHAAKRLLELDPLNA 536 (600)
Q Consensus 514 ~~g~~~~a~~~~~~~~~~~p~~~ 536 (600)
..+++.+|+.+|++.....-+|+
T Consensus 166 ~leqY~~Ai~iyeqva~~s~~n~ 188 (288)
T KOG1586|consen 166 QLEQYSKAIDIYEQVARSSLDNN 188 (288)
T ss_pred HHHHHHHHHHHHHHHHHHhccch
Confidence 66889999999999887555443
No 306
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=89.31 E-value=12 Score=31.34 Aligned_cols=125 Identities=11% Similarity=0.085 Sum_probs=78.2
Q ss_pred CCCCCChhhHHHHHHHHHhcCChhhHHHHhcccCCCCchhHHHHHHHHHhc--CChHHHHHHHhhCCCCChhhHHHHHHH
Q 007519 229 NGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSV--GQVSNAYYLFHNMPDRDAVAWTAMISG 306 (600)
Q Consensus 229 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~A~~~~~~~~~~~~~~~~~li~~ 306 (600)
.+++|+...+..+++.+.+.|++.....++..-.-+|.......+-.+... .-..-|++++.++. ..+..++..
T Consensus 23 ~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~----~~~~~iiev 98 (167)
T PF07035_consen 23 HNIPVQHELYELLIDLLIRNGQFSQLHQLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG----TAYEEIIEV 98 (167)
T ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh----hhHHHHHHH
Confidence 378888889999999999999888887777665544444333332222211 11334455555544 245667778
Q ss_pred HHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhcccchhhhHHHHHHHhhh
Q 007519 307 LVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKT 361 (600)
Q Consensus 307 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 361 (600)
+...|++-+|+++.+..... +......++.+..+.+|...-..+++...+.
T Consensus 99 LL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~ 149 (167)
T PF07035_consen 99 LLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEER 149 (167)
T ss_pred HHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 88999999999988765332 2223355667777777766666666544443
No 307
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=89.29 E-value=2.4 Score=38.65 Aligned_cols=72 Identities=11% Similarity=0.202 Sum_probs=51.4
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhcCC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHH-----cCCCCChhHHHHH
Q 007519 368 ILENCLISMYAKCGVIDNAYNIFSNMV---SRDLVSWNSMVMGFSHHGLANETLKVFESMLE-----SGTHPNSVTFLGI 439 (600)
Q Consensus 368 ~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~-----~~~~p~~~~~~~l 439 (600)
.++..++..+...|+.+.+.+.++++. +-+...|..++.+|.+.|+...|+..|+.+.+ .|+.|...+....
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 345567777777888888888777776 44667888888888888888888888877765 3666665554433
No 308
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=89.24 E-value=58 Score=39.20 Aligned_cols=120 Identities=6% Similarity=-0.010 Sum_probs=74.9
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHhcCChhhHHHHhcc-cCCCCchhHHHHHHHHHhcC
Q 007519 202 AMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDT-VPVRDEISWTSMIDGYLSVG 280 (600)
Q Consensus 202 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~l~~~~~~~~ 280 (600)
.+..+-.+.+.+.+|+-.++.-... +........-|..+...|..-+++|...-+... ... +.. ...+-.....|
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~-ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~--~sl-~~qil~~e~~g 1463 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRST-EKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFAD--PSL-YQQILEHEASG 1463 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccc-cchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcC--ccH-HHHHHHHHhhc
Confidence 4555667788888888888874211 001122233444555588888888877766653 222 222 23344456678
Q ss_pred ChHHHHHHHhhCCC--CC-hhhHHHHHHHHHhCCChhHHHHHHHHHHH
Q 007519 281 QVSNAYYLFHNMPD--RD-AVAWTAMISGLVQNELFVEATYLFMEMRA 325 (600)
Q Consensus 281 ~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 325 (600)
++..|...|+.+.. |+ ..+++.++......|.++.++-..+-...
T Consensus 1464 ~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~ 1511 (2382)
T KOG0890|consen 1464 NWADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLII 1511 (2382)
T ss_pred cHHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhh
Confidence 88888888888876 33 55777777777777777777765554443
No 309
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=88.93 E-value=17 Score=32.62 Aligned_cols=73 Identities=12% Similarity=-0.048 Sum_probs=40.2
Q ss_pred HHHHhCCChhHHHHHHHHHHHCC--CCCChhHHHHHHHHHhcccchhhhHHHHHHHhhhcCCCchhHHHHHHHHH
Q 007519 305 SGLVQNELFVEATYLFMEMRAHG--VPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMY 377 (600)
Q Consensus 305 ~~~~~~g~~~~a~~~~~~m~~~g--~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 377 (600)
..-.+.|++++|...|+.+..+. -+-...+...++-++.+.++.+.|....++..+.-......-|...+.++
T Consensus 42 ~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgL 116 (254)
T COG4105 42 LTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGL 116 (254)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHH
Confidence 33456778888888888777652 11123344445556666667777766666555544333333333344333
No 310
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=88.86 E-value=20 Score=33.50 Aligned_cols=140 Identities=14% Similarity=0.128 Sum_probs=73.6
Q ss_pred hhHHHHHHHHHHHCCCCCChhHHHHHHHHHhc--cc----chhhhHHHHHHHhhhcCCCchhHHHHHHHHHHhcCChHHH
Q 007519 313 FVEATYLFMEMRAHGVPPLNATFSVLFGAAGA--TA----NIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNA 386 (600)
Q Consensus 313 ~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~--~~----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 386 (600)
+++.+.+++.|.+.|..-+..+|.+....... .. ....+..+++.|.+...-.+
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLT-------------------- 137 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLT-------------------- 137 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCcccc--------------------
Confidence 34567788888888888877766553333222 11 23344555555554332100
Q ss_pred HHHHhcCCCCChhhHHHHHHHHHhcCC----hHHHHHHHHHHHHcCCCCChh--HHHHHHHHhcccCc--hHHHHHHHHH
Q 007519 387 YNIFSNMVSRDLVSWNSMVMGFSHHGL----ANETLKVFESMLESGTHPNSV--TFLGILSACSHAGL--VSRGWELFNA 458 (600)
Q Consensus 387 ~~~~~~~~~~~~~~~~~l~~~~~~~~~----~~~a~~~~~~m~~~~~~p~~~--~~~~l~~~~~~~g~--~~~a~~~~~~ 458 (600)
.++-.++..++.. ..++ .+.+..+|+.+.+.|+..+.. ....++..+..... ..++.++++.
T Consensus 138 --------s~~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~ 207 (297)
T PF13170_consen 138 --------SPEDYPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNA 207 (297)
T ss_pred --------CccchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHH
Confidence 1111222222211 1111 356677788888877766543 33333333322222 4567788887
Q ss_pred HHhhcCCCCCcchHHHHHHHHhhcC
Q 007519 459 MFDVYKIQPGPEHYVSMINLLGRAG 483 (600)
Q Consensus 459 ~~~~~~~~p~~~~~~~l~~~~~~~g 483 (600)
+.+. ++++....|..++-.-.-.+
T Consensus 208 l~~~-~~kik~~~yp~lGlLall~~ 231 (297)
T PF13170_consen 208 LKKN-GVKIKYMHYPTLGLLALLED 231 (297)
T ss_pred HHHc-CCccccccccHHHHHHhcCC
Confidence 7775 88877767776655443333
No 311
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.37 E-value=6.8 Score=32.53 Aligned_cols=56 Identities=9% Similarity=0.131 Sum_probs=35.3
Q ss_pred HHhcCChHHHHHHHhcCCCC-C---hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 007519 377 YAKCGVIDNAYNIFSNMVSR-D---LVSWNSMVMGFSHHGLANETLKVFESMLESGTHPN 432 (600)
Q Consensus 377 ~~~~~~~~~A~~~~~~~~~~-~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~ 432 (600)
+...|.++......+.+..+ + ...-..|.-+-.+.|++.+|.+.|..+......|.
T Consensus 142 LvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~apr 201 (221)
T COG4649 142 LVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAPR 201 (221)
T ss_pred HhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCcH
Confidence 45667777777666666522 1 22334566666778888888888888776544443
No 312
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=87.48 E-value=1.3 Score=24.86 Aligned_cols=27 Identities=22% Similarity=0.091 Sum_probs=17.6
Q ss_pred HHHHHhhhhCCHHHHHHHHHHHHhhCCC
Q 007519 507 LLGACGFCEGNAEIAEHAAKRLLELDPL 534 (600)
Q Consensus 507 l~~~~~~~~g~~~~a~~~~~~~~~~~p~ 534 (600)
+..++. ..|+.++|+..++++++..|+
T Consensus 6 ~a~~~~-~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 6 LARCYY-KLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHH-HHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHH-HccCHHHHHHHHHHHHHHCcC
Confidence 344445 667777777777777777663
No 313
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=87.33 E-value=1.4 Score=26.45 Aligned_cols=27 Identities=26% Similarity=0.201 Sum_probs=13.0
Q ss_pred HHHHHHHHHhhhhCCHHHHHHHHHHHHh
Q 007519 503 IWGALLGACGFCEGNAEIAEHAAKRLLE 530 (600)
Q Consensus 503 ~~~~l~~~~~~~~g~~~~a~~~~~~~~~ 530 (600)
+++.+...+. ..|++++|+.+++++++
T Consensus 4 ~~~~la~~~~-~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 4 ALNNLANAYR-AQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHH-HCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-hhhhcchhhHHHHHHHH
Confidence 3444444444 45555555555555544
No 314
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=87.20 E-value=2.8 Score=41.77 Aligned_cols=101 Identities=18% Similarity=0.094 Sum_probs=77.8
Q ss_pred hcccCchHHHHHHHHHHHhhcCCCC--CcchHHHHHHHHhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHhhhhCCH
Q 007519 443 CSHAGLVSRGWELFNAMFDVYKIQP--GPEHYVSMINLLGRAGKIKEAEEFVLRLP--FEPDHRIWGALLGACGFCEGNA 518 (600)
Q Consensus 443 ~~~~g~~~~a~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~g~~ 518 (600)
+...|+...|..++..+.. ..| .......|+..+.+.|...+|-.++.... ..-.+.++..+.+++. ...++
T Consensus 617 wr~~gn~~~a~~cl~~a~~---~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l-~l~~i 692 (886)
T KOG4507|consen 617 WRAVGNSTFAIACLQRALN---LAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYL-ALKNI 692 (886)
T ss_pred eeecCCcHHHHHHHHHHhc---cChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHH-HHhhh
Confidence 3456899999999988764 355 34566778888889998889988876643 3334556777778888 88999
Q ss_pred HHHHHHHHHHHhhCCCCCCcHHHHhHHHH
Q 007519 519 EIAEHAAKRLLELDPLNAPAHVVLCNIYA 547 (600)
Q Consensus 519 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 547 (600)
+.|++.++++.++.|+++.+-..|..+-+
T Consensus 693 ~~a~~~~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 693 SGALEAFRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred HHHHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence 99999999999999998888777655433
No 315
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=87.19 E-value=0.83 Score=24.27 Aligned_cols=24 Identities=25% Similarity=0.259 Sum_probs=19.0
Q ss_pred CcHHHHhHHHHhhCCcHHHHHHHH
Q 007519 537 PAHVVLCNIYAASGRHVEEHKLRM 560 (600)
Q Consensus 537 ~~~~~l~~~~~~~g~~~~A~~~~~ 560 (600)
.....++.++...|++++|..+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 456678888899999999888664
No 316
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=87.13 E-value=8.9 Score=28.46 Aligned_cols=60 Identities=20% Similarity=0.198 Sum_probs=42.2
Q ss_pred HHHHhcCChHHHHHHHhhCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHH
Q 007519 274 DGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFS 336 (600)
Q Consensus 274 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~ 336 (600)
..+...|++++|..+.+.+..||...|.++.. .+.|..+....-+.+|..+| .|....|.
T Consensus 47 sSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg-~p~lq~Fa 106 (115)
T TIGR02508 47 SSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAASG-DPRLQTFV 106 (115)
T ss_pred HHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC-CHHHHHHH
Confidence 45667788888888888887788888776653 46677777777777777776 45444443
No 317
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=87.03 E-value=14 Score=30.90 Aligned_cols=115 Identities=10% Similarity=0.138 Sum_probs=52.2
Q ss_pred CCcchHHHHHHHHHcCCChhHHHHHhhhcCCCChhhHHHHHHHHHhcC--ChHHHHHHhhcCCCCCceeHHHHHHHHHHC
Q 007519 40 RNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAG--RVCEARKLFEEMPERNVVSWNSMVVGLIRN 117 (600)
Q Consensus 40 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~ 117 (600)
++...+..+++.+.+.|++.....++.--.=+|.......+-.+.... -..-|.+.+.++. ..+..++..+...
T Consensus 27 ~~~~L~~lli~lLi~~~~~~~L~qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~----~~~~~iievLL~~ 102 (167)
T PF07035_consen 27 VQHELYELLIDLLIRNGQFSQLHQLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG----TAYEEIIEVLLSK 102 (167)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh----hhHHHHHHHHHhC
Confidence 455556666666666666666555554433333332222221111110 0122223333222 2344455556666
Q ss_pred CChhHHHHHhhcCCCCCcccHHHHHHHHHhcCCHhHHHHHH
Q 007519 118 GELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLF 158 (600)
Q Consensus 118 ~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 158 (600)
|++-+|++..+.....+......++.+..+.+|...--.++
T Consensus 103 g~vl~ALr~ar~~~~~~~~~~~~fLeAA~~~~D~~lf~~V~ 143 (167)
T PF07035_consen 103 GQVLEALRYARQYHKVDSVPARKFLEAAANSNDDQLFYAVF 143 (167)
T ss_pred CCHHHHHHHHHHcCCcccCCHHHHHHHHHHcCCHHHHHHHH
Confidence 66666666665544433334444555555555544333333
No 318
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=86.98 E-value=79 Score=38.16 Aligned_cols=310 Identities=13% Similarity=0.046 Sum_probs=165.5
Q ss_pred HHHHHHHhcCChhhHHHHhcccC----CC--CchhHHHHHHHHHhcCChHHHHHHHhh-CCCCChhhHHHHHHHHHhCCC
Q 007519 240 SMINGYIRFGRLEEAQNLFDTVP----VR--DEISWTSMIDGYLSVGQVSNAYYLFHN-MPDRDAVAWTAMISGLVQNEL 312 (600)
Q Consensus 240 ~l~~~~~~~~~~~~a~~~~~~~~----~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~-~~~~~~~~~~~li~~~~~~g~ 312 (600)
.+..+-.+.+.+.+|...++.-. +. ....+..+...|...+++|....+... ...++. ..-|.-....|+
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~sl---~~qil~~e~~g~ 1464 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADPSL---YQQILEHEASGN 1464 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCccH---HHHHHHHHhhcc
Confidence 34445567788888888888731 11 222344555589999999988887773 333332 234445677899
Q ss_pred hhHHHHHHHHHHHCCCCCChhHHHHHHHHHhcccchhhhHHHHHHHhhhcCCCchhHHHHHHHHHHhcCChHHHHHHHhc
Q 007519 313 FVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSN 392 (600)
Q Consensus 313 ~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 392 (600)
+..|...|+.+.+.+ ++...+++-++......+.+.......+-......+-....++.=+.+--+.++++.......
T Consensus 1465 ~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l~qwD~~e~~l~- 1542 (2382)
T KOG0890|consen 1465 WADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLGVEAAWRLSQWDLLESYLS- 1542 (2382)
T ss_pred HHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHHHHHHhhhcchhhhhhhhh-
Confidence 999999999999874 334667877777766677776666544433322222122223333444466777776666655
Q ss_pred CCCCChhhHHHH--HHHHHhc--CChHHHHHHHHHHHHcCCCCCh---------hHHHHHHHHhcccCchHHHHHHHHHH
Q 007519 393 MVSRDLVSWNSM--VMGFSHH--GLANETLKVFESMLESGTHPNS---------VTFLGILSACSHAGLVSRGWELFNAM 459 (600)
Q Consensus 393 ~~~~~~~~~~~l--~~~~~~~--~~~~~a~~~~~~m~~~~~~p~~---------~~~~~l~~~~~~~g~~~~a~~~~~~~ 459 (600)
..+..+|... +..+.+. .+.-.-.+.++.+++.-+.|=. ..|..++....- .++-...
T Consensus 1543 --~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l-------~el~~~~ 1613 (2382)
T KOG0890|consen 1543 --DRNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLL-------LELENSI 1613 (2382)
T ss_pred --cccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHH-------HHHHHHH
Confidence 4455555554 2222222 1221222333333332111100 112222221110 1111111
Q ss_pred HhhcCCCCCc------chHHHHHHHHhhcCChHHHHHHHHhC----CCCC-----CHHHHHHHHHHHhhhhCCHHHHHHH
Q 007519 460 FDVYKIQPGP------EHYVSMINLLGRAGKIKEAEEFVLRL----PFEP-----DHRIWGALLGACGFCEGNAEIAEHA 524 (600)
Q Consensus 460 ~~~~~~~p~~------~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p-----~~~~~~~l~~~~~~~~g~~~~a~~~ 524 (600)
....+..++. ..|..-+..-....+..+-.-.+++. ...| -..+|......++ ..|..+.|-..
T Consensus 1614 ~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR-~aG~~q~A~na 1692 (2382)
T KOG0890|consen 1614 EELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIAR-LAGHLQRAQNA 1692 (2382)
T ss_pred HHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHH-hcccHHHHHHH
Confidence 1111333321 11222221111111122211111111 1222 2456777777787 88999998888
Q ss_pred HHHHHhhCCCCCCcHHHHhHHHHhhCCcHHHHHHHHHHhhcC
Q 007519 525 AKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKG 566 (600)
Q Consensus 525 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 566 (600)
.-.+.+..+ +.++.-.+..+...|+...|..+++...+..
T Consensus 1693 ll~A~e~r~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1693 LLNAKESRL--PEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred HHhhhhccc--chHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 877777664 6778888888999999999999776665443
No 319
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.75 E-value=47 Score=35.29 Aligned_cols=174 Identities=11% Similarity=0.042 Sum_probs=83.4
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHhcccCCc---hhHHHHHHHHHhcCChhHHHHHHccCCC-CCcchHHHHHHHHHhcCCh
Q 007519 138 WNAMIAGYVECCMMGEAIVLFEEMEERNV---VTWTSMISGYCRAGEVEEGYCLFRRMPR-KNVVSWTAMIGGFAWNGFH 213 (600)
Q Consensus 138 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~~~~ 213 (600)
...-+..+.+...++-|..+.+.-.-+.. .......+.+.+.|++++|...|-+-.. -++ ..+|.-|......
T Consensus 337 le~kL~iL~kK~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~---s~Vi~kfLdaq~I 413 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEP---SEVIKKFLDAQRI 413 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCCh---HHHHHHhcCHHHH
Confidence 33444445555555555555443221111 1222333445566777777766554332 111 1244555555555
Q ss_pred hHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHhcCChhhHHHHhcccCCCCchh--HHHHHHHHHhcCChHHHHHHHhh
Q 007519 214 KESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEIS--WTSMIDGYLSVGQVSNAYYLFHN 291 (600)
Q Consensus 214 ~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~A~~~~~~ 291 (600)
..-..+++.+.+. |.. +...-..|+.+|.+.++.++-.++.+... ..... .-..+..+.+.+-.++|..+-..
T Consensus 414 knLt~YLe~L~~~---gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~~fd~e~al~Ilr~snyl~~a~~LA~k 488 (933)
T KOG2114|consen 414 KNLTSYLEALHKK---GLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEWFFDVETALEILRKSNYLDEAELLATK 488 (933)
T ss_pred HHHHHHHHHHHHc---ccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-CcceeeeHHHHHHHHHHhChHHHHHHHHHH
Confidence 5555566666543 433 33334566777777777777666666554 11111 23344444455555555444333
Q ss_pred CCCCChhhHHHHHHHHHhCCChhHHHHHHHHH
Q 007519 292 MPDRDAVAWTAMISGLVQNELFVEATYLFMEM 323 (600)
Q Consensus 292 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 323 (600)
... +..... -.+...+++++|++.+..+
T Consensus 489 ~~~-he~vl~---ille~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 489 FKK-HEWVLD---ILLEDLHNYEEALRYISSL 516 (933)
T ss_pred hcc-CHHHHH---HHHHHhcCHHHHHHHHhcC
Confidence 322 122222 2233456666666666543
No 320
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=86.36 E-value=51 Score=35.34 Aligned_cols=50 Identities=14% Similarity=0.085 Sum_probs=25.2
Q ss_pred hcCChHHHHHHHHHHHHcCCC-----CChhHHHHHHHHhcccCchHHHHHHHHHHH
Q 007519 410 HHGLANETLKVFESMLESGTH-----PNSVTFLGILSACSHAGLVSRGWELFNAMF 460 (600)
Q Consensus 410 ~~~~~~~a~~~~~~m~~~~~~-----p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 460 (600)
..|++++|+++.+..... ++ +....+..+..+..-.|++++|..+.+...
T Consensus 470 ~~~~~e~a~~lar~al~~-L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~ 524 (894)
T COG2909 470 NRGDPEEAEDLARLALVQ-LPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAE 524 (894)
T ss_pred hcCCHHHHHHHHHHHHHh-cccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHH
Confidence 455666666666555543 12 122333344444455566666665555444
No 321
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=86.21 E-value=1.3 Score=40.70 Aligned_cols=81 Identities=20% Similarity=0.067 Sum_probs=65.8
Q ss_pred HHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCCCcHHHHhHHHHhhCCcH
Q 007519 476 INLLGRAGKIKEAEEFVLRL-PFEP-DHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHV 553 (600)
Q Consensus 476 ~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 553 (600)
+.-|.++|++++|+..|.+. -..| ++.++..-..+|. +...+..|+.-...++.++-....+|..-+.+-...|+..
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYl-k~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~ 182 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYL-KQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNM 182 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHH-HHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHH
Confidence 45688999999999999875 4667 6777777778888 9999999999999999988766677777777777777777
Q ss_pred HHHH
Q 007519 554 EEHK 557 (600)
Q Consensus 554 ~A~~ 557 (600)
+|.+
T Consensus 183 EAKk 186 (536)
T KOG4648|consen 183 EAKK 186 (536)
T ss_pred HHHH
Confidence 7776
No 322
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.14 E-value=13 Score=37.42 Aligned_cols=98 Identities=14% Similarity=0.188 Sum_probs=45.6
Q ss_pred hcCChHHHHHHHhhCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhcccchhhhHHHHHH
Q 007519 278 SVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCV 357 (600)
Q Consensus 278 ~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 357 (600)
+.|+++.|.++..+. .+..-|..|..+..+.|++..|.+.|..... |..|+-.+...|+-+....+-..
T Consensus 649 ~lgrl~iA~~la~e~--~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~ 717 (794)
T KOG0276|consen 649 KLGRLDIAFDLAVEA--NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASL 717 (794)
T ss_pred hcCcHHHHHHHHHhh--cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHH
Confidence 344444444443322 2334455555555566666666555554432 23344444444444444333333
Q ss_pred HhhhcCCCchhHHHHHHHHHHhcCChHHHHHHHhc
Q 007519 358 LMKTESESDLILENCLISMYAKCGVIDNAYNIFSN 392 (600)
Q Consensus 358 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 392 (600)
..+.|.. |....+|...|+++++.+++.+
T Consensus 718 ~~~~g~~------N~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 718 AKKQGKN------NLAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred HHhhccc------chHHHHHHHcCCHHHHHHHHHh
Confidence 3333322 2233345556666666655543
No 323
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=85.90 E-value=35 Score=32.98 Aligned_cols=59 Identities=10% Similarity=0.044 Sum_probs=35.0
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhcCCCC-------ChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 007519 368 ILENCLISMYAKCGVIDNAYNIFSNMVSR-------DLVSWNSMVMGFSHHGLANETLKVFESMLE 426 (600)
Q Consensus 368 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 426 (600)
.++..++..+.+.|.++.|...+..+... .+...-.-+..+...|+..+|+..++....
T Consensus 147 ~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 147 ETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34455556666666666666666655421 233344445566667777777777776665
No 324
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=85.73 E-value=4.7 Score=29.68 Aligned_cols=62 Identities=15% Similarity=0.163 Sum_probs=45.4
Q ss_pred ChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCCCcchHHHHH
Q 007519 413 LANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMI 476 (600)
Q Consensus 413 ~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~ 476 (600)
+.-++.+-++.+....+.|++....+.+++|-+.+++..|.++++-++.+.+ .+...|..++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~--~~~~~y~~~l 83 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCG--AHKEIYPYIL 83 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--CchhhHHHHH
Confidence 4456667777777777888888888889999999999999999887775422 2344555554
No 325
>PRK12798 chemotaxis protein; Reviewed
Probab=85.55 E-value=37 Score=32.98 Aligned_cols=181 Identities=15% Similarity=0.197 Sum_probs=110.2
Q ss_pred cCChHHHHHHHhcCC----CCChhhHHHHHHH-HHhcCChHHHHHHHHHHHHcCCCCCh----hHHHHHHHHhcccCchH
Q 007519 380 CGVIDNAYNIFSNMV----SRDLVSWNSMVMG-FSHHGLANETLKVFESMLESGTHPNS----VTFLGILSACSHAGLVS 450 (600)
Q Consensus 380 ~~~~~~A~~~~~~~~----~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~m~~~~~~p~~----~~~~~l~~~~~~~g~~~ 450 (600)
.|+.++|.+.+..+. ++....+-.|+.+ .....+..+|+.+|+...-. -|.. .....-+......|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLl--aPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLL--APGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHh--CCchHHHHHHHHHhhHHHHhcCcHH
Confidence 588888888888876 3445566666655 44566788899998887642 3432 23333444567888999
Q ss_pred HHHHHHHHHHhhcCCCCCcchHH-HHHHHHhhcC---ChHHHHHHHHhCCCCCCHHHHHHHHHHHhhhhCCHHHHHHHHH
Q 007519 451 RGWELFNAMFDVYKIQPGPEHYV-SMINLLGRAG---KIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAK 526 (600)
Q Consensus 451 ~a~~~~~~~~~~~~~~p~~~~~~-~l~~~~~~~g---~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~g~~~~a~~~~~ 526 (600)
++..+-.....++.-.|-...|. .+...+.+.+ ..+.-..++..|.-.-....|..+..... ..|+.+.|....+
T Consensus 203 rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Al-i~Gk~~lA~~As~ 281 (421)
T PRK12798 203 KFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAAL-IDGKTELARFASE 281 (421)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHH-HcCcHHHHHHHHH
Confidence 88888887777766666433332 2333333333 33444455555542223456777777777 7899999999999
Q ss_pred HHHhhCCCCCCcHHHHhHHHH-----hhCCcHHHHHHHHHHhh
Q 007519 527 RLLELDPLNAPAHVVLCNIYA-----ASGRHVEEHKLRMDMGL 564 (600)
Q Consensus 527 ~~~~~~p~~~~~~~~l~~~~~-----~~g~~~~A~~~~~~~~~ 564 (600)
++..+.. ....-...+..|. -..++++|.+.+..+.+
T Consensus 282 ~A~~L~~-~~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I~~ 323 (421)
T PRK12798 282 RALKLAD-PDSADAARARLYRGAALVASDDAESALEELSQIDR 323 (421)
T ss_pred HHHHhcc-CCCcchHHHHHHHHHHccCcccHHHHHHHHhcCCh
Confidence 9988764 3333333333332 23556666665555443
No 326
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=85.15 E-value=32 Score=31.96 Aligned_cols=61 Identities=11% Similarity=0.001 Sum_probs=29.7
Q ss_pred hHHHHHHHHHhcCChH---HHHHHHHHHHHcCCCCC-hhHHHHHHHHhcccCchHHHHHHHHHHHhh
Q 007519 400 SWNSMVMGFSHHGLAN---ETLKVFESMLESGTHPN-SVTFLGILSACSHAGLVSRGWELFNAMFDV 462 (600)
Q Consensus 400 ~~~~l~~~~~~~~~~~---~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 462 (600)
+...++.+|...+..+ +|..+++.+... -|+ ...+..-+..+.+.++.+.+.+.+.+|...
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e--~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESE--YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHh--CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 3444555555544433 344444444332 122 233333344555566666666666666653
No 327
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=85.14 E-value=3.9 Score=30.41 Aligned_cols=61 Identities=13% Similarity=0.170 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHcCCCCChhHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCCCcchHHHHHH
Q 007519 415 NETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMIN 477 (600)
Q Consensus 415 ~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 477 (600)
-+..+-++.+....+.|++......+.+|.+.+++..|.++|+-++.+.+ +....|..++.
T Consensus 27 we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~--~~~~~Y~~~lq 87 (108)
T PF02284_consen 27 WELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG--NKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT--T-TTHHHHHHH
T ss_pred HHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--ChHHHHHHHHH
Confidence 35666666666677888888888888888888888888888888876533 33336666553
No 328
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=84.72 E-value=2.4 Score=24.07 Aligned_cols=29 Identities=10% Similarity=0.085 Sum_probs=22.0
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHHHhh
Q 007519 198 VSWTAMIGGFAWNGFHKESLLLFIEMKGI 226 (600)
Q Consensus 198 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 226 (600)
.+|..+...+...|++++|+..|++.++.
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 35677788888888888888888888765
No 329
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=84.06 E-value=1.9 Score=22.87 Aligned_cols=22 Identities=23% Similarity=0.268 Sum_probs=13.5
Q ss_pred HHHHHHHHhhcCChHHHHHHHH
Q 007519 472 YVSMINLLGRAGKIKEAEEFVL 493 (600)
Q Consensus 472 ~~~l~~~~~~~g~~~~A~~~~~ 493 (600)
...++.++...|++++|..+++
T Consensus 4 ~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 4 RLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHcCCHHHHHHHHh
Confidence 3445666666666666666654
No 330
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.86 E-value=18 Score=36.61 Aligned_cols=47 Identities=13% Similarity=0.155 Sum_probs=24.2
Q ss_pred HHhcCChhHHHHHHccCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHH
Q 007519 176 YCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMK 224 (600)
Q Consensus 176 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 224 (600)
..+.|+++.|.++..+. .+..-|..|.++....+++..|.++|....
T Consensus 647 al~lgrl~iA~~la~e~--~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~ 693 (794)
T KOG0276|consen 647 ALKLGRLDIAFDLAVEA--NSEVKWRQLGDAALSAGELPLASECFLRAR 693 (794)
T ss_pred hhhcCcHHHHHHHHHhh--cchHHHHHHHHHHhhcccchhHHHHHHhhc
Confidence 34445555555544332 233445555555555566555555555544
No 331
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=83.28 E-value=2.1 Score=26.37 Aligned_cols=27 Identities=19% Similarity=0.207 Sum_probs=22.5
Q ss_pred HHHhHHHHhhCCcHHHHHHHHHHhhcC
Q 007519 540 VVLCNIYAASGRHVEEHKLRMDMGLKG 566 (600)
Q Consensus 540 ~~l~~~~~~~g~~~~A~~~~~~~~~~~ 566 (600)
..|+.+|...|+.+.|.++++++...|
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 468899999999999999888877544
No 332
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=82.51 E-value=13 Score=31.95 Aligned_cols=74 Identities=12% Similarity=0.114 Sum_probs=40.4
Q ss_pred hHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccCchHHHHHHHHHHHhhcCC--CCCcchHHHHHHHHhhcCChHHH
Q 007519 414 ANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKI--QPGPEHYVSMINLLGRAGKIKEA 488 (600)
Q Consensus 414 ~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A 488 (600)
-++|...|-.+...+.--+.. ....+..|....+.++++.++.++.+...- .+|+..+.+|+..|.+.|+++.|
T Consensus 122 d~~A~~~fL~~E~~~~l~t~e-lq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 122 DQEALRRFLQLEGTPELETAE-LQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred cHHHHHHHHHHcCCCCCCCHH-HHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 355666666665554333333 333333333456666666666666654322 34566666777777666666665
No 333
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=82.04 E-value=3.6 Score=22.25 Aligned_cols=29 Identities=31% Similarity=0.182 Sum_probs=17.2
Q ss_pred HHHHHHHHhhhhCCHHHHHHHHHHHHhhCC
Q 007519 504 WGALLGACGFCEGNAEIAEHAAKRLLELDP 533 (600)
Q Consensus 504 ~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p 533 (600)
+..+...+. ..|+++.|+..++++++..|
T Consensus 4 ~~~~a~~~~-~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 4 LYNLGNAYL-KLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHH-HHhhHHHHHHHHHHHHccCC
Confidence 334444444 66666666666666666655
No 334
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=82.02 E-value=3.5 Score=23.22 Aligned_cols=28 Identities=14% Similarity=0.217 Sum_probs=20.3
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhh
Q 007519 199 SWTAMIGGFAWNGFHKESLLLFIEMKGI 226 (600)
Q Consensus 199 ~~~~li~~~~~~~~~~~a~~~~~~~~~~ 226 (600)
.|..+...+...|++++|++.|++..+.
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 4566777778888888888888887765
No 335
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.83 E-value=36 Score=30.07 Aligned_cols=19 Identities=32% Similarity=0.438 Sum_probs=10.3
Q ss_pred CCHHHHHHHHHHHHhhCCC
Q 007519 516 GNAEIAEHAAKRLLELDPL 534 (600)
Q Consensus 516 g~~~~a~~~~~~~~~~~p~ 534 (600)
.|.-.+...+++-.+++|.
T Consensus 209 ~D~v~a~~ALeky~~~dP~ 227 (288)
T KOG1586|consen 209 ADEVNAQRALEKYQELDPA 227 (288)
T ss_pred ccHHHHHHHHHHHHhcCCc
Confidence 4555555555555555654
No 336
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=81.82 E-value=4.5 Score=35.49 Aligned_cols=118 Identities=14% Similarity=0.085 Sum_probs=69.4
Q ss_pred HhcccCchHHHHHHHHHHHhhcCCCCCc-chHHHHHHHHhhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHhhhhCCHH
Q 007519 442 ACSHAGLVSRGWELFNAMFDVYKIQPGP-EHYVSMINLLGRAGKIKEAEEFVLRL-PFEPDHRIWGALLGACGFCEGNAE 519 (600)
Q Consensus 442 ~~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~g~~~ 519 (600)
.|.....++.|+..+.+.+ .+.|+. .-|..=+..+.+..+++.+..--.+. .+.|+..--...++.+......++
T Consensus 19 k~f~~k~y~~ai~~y~raI---~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~ 95 (284)
T KOG4642|consen 19 KCFIPKRYDDAIDCYSRAI---CINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYD 95 (284)
T ss_pred cccchhhhchHHHHHHHHH---hcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhcccc
Confidence 4556667888888777776 346764 44455666677777777776554443 467776665666655543677788
Q ss_pred HHHHHHHHHHhhCCC-----CCCcHHHHhHHHHhhCCcHHHHHHHHHH
Q 007519 520 IAEHAAKRLLELDPL-----NAPAHVVLCNIYAASGRHVEEHKLRMDM 562 (600)
Q Consensus 520 ~a~~~~~~~~~~~p~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 562 (600)
+|+..++++.++.-. -..+...|..+-...=...+..++++..
T Consensus 96 eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~~ 143 (284)
T KOG4642|consen 96 EAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQEL 143 (284)
T ss_pred HHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHHh
Confidence 888888887653211 2233444444333333334444455443
No 337
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=81.73 E-value=1 Score=41.50 Aligned_cols=108 Identities=19% Similarity=0.162 Sum_probs=45.5
Q ss_pred ccCchHHHHHHHHHHHhhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHhCC-CCCCHH-HHHHHHHHHhhhhCCHHHH
Q 007519 445 HAGLVSRGWELFNAMFDVYKIQP-GPEHYVSMINLLGRAGKIKEAEEFVLRLP-FEPDHR-IWGALLGACGFCEGNAEIA 521 (600)
Q Consensus 445 ~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~-~~~~l~~~~~~~~g~~~~a 521 (600)
..|.++.|++.|-..+.. .| ....|..-..++.+.++...|++=++... +.||.. .|-.-..+-. ..|++++|
T Consensus 126 n~G~~~~ai~~~t~ai~l---np~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~r-llg~~e~a 201 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIEL---NPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAER-LLGNWEEA 201 (377)
T ss_pred cCcchhhhhccccccccc---CCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHH-HhhchHHH
Confidence 344555555555554432 23 23344444444555555555554444432 333322 1222222222 34555555
Q ss_pred HHHHHHHHhhCCCCCCcHHHHhHHHHhhCCcHHHHH
Q 007519 522 EHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHK 557 (600)
Q Consensus 522 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 557 (600)
...+..+.+++- +..+-..|-.+.-+.+..++-..
T Consensus 202 a~dl~~a~kld~-dE~~~a~lKeV~p~a~ki~e~~~ 236 (377)
T KOG1308|consen 202 AHDLALACKLDY-DEANSATLKEVFPNAGKIEEHRR 236 (377)
T ss_pred HHHHHHHHhccc-cHHHHHHHHHhccchhhhhhchh
Confidence 555555555444 33333333333333344333333
No 338
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=81.53 E-value=11 Score=31.61 Aligned_cols=45 Identities=18% Similarity=0.226 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHhhCCCCCCcHHHHhHHHHhhCCcHHHHHHHHHHhhcCCcc
Q 007519 518 AEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRK 569 (600)
Q Consensus 518 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 569 (600)
+++|...|+++...+| +-..|..-+... ++|-++..++.+.+...
T Consensus 96 F~kA~~~FqkAv~~~P-~ne~Y~ksLe~~------~kap~lh~e~~~~~~~~ 140 (186)
T PF06552_consen 96 FEKATEYFQKAVDEDP-NNELYRKSLEMA------AKAPELHMEIHKQGLGQ 140 (186)
T ss_dssp HHHHHHHHHHHHHH-T-T-HHHHHHHHHH------HTHHHHHHHHHHSSS--
T ss_pred HHHHHHHHHHHHhcCC-CcHHHHHHHHHH------HhhHHHHHHHHHHHhhh
Confidence 5677888888888999 444554443333 35666776666665443
No 339
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=81.49 E-value=36 Score=29.76 Aligned_cols=124 Identities=14% Similarity=0.175 Sum_probs=74.4
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCCC----cchHHHH
Q 007519 400 SWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPG----PEHYVSM 475 (600)
Q Consensus 400 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l 475 (600)
+.+..++.+.+.+...+++...++-.+.+ +.+..+-..+++.++-.|++++|..-++-+.+ +.|+ ...|..+
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~---l~p~~t~~a~lyr~l 78 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAAT---LSPQDTVGASLYRHL 78 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhh---cCcccchHHHHHHHH
Confidence 34455677888888999999888777652 33445555677889999999999988877654 3554 3444444
Q ss_pred HHHHhhcCChHHHHH-HHHh--CC---CCCCHHHHHHHHHHHhhhh-CCHHHHHHHHHHHHhhCCC
Q 007519 476 INLLGRAGKIKEAEE-FVLR--LP---FEPDHRIWGALLGACGFCE-GNAEIAEHAAKRLLELDPL 534 (600)
Q Consensus 476 ~~~~~~~g~~~~A~~-~~~~--~~---~~p~~~~~~~l~~~~~~~~-g~~~~a~~~~~~~~~~~p~ 534 (600)
+.+ +.+.. +|.- -+ ..|.+.-...+..+...+. |.-+.+..+-+++++..|.
T Consensus 79 ir~-------ea~R~evfag~~~Pgflg~p~p~wva~L~aala~h~dg~gea~~alreqal~aa~~ 137 (273)
T COG4455 79 IRC-------EAARNEVFAGGAVPGFLGGPSPEWVAALLAALALHSDGAGEARTALREQALKAAPV 137 (273)
T ss_pred HHH-------HHHHHHHhccCCCCCCcCCCCHHHHHHHHHHHhcccCCcchHHHHHHHHHHhhCCC
Confidence 432 23332 2321 12 2233333344444433233 4556567777788887773
No 340
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=81.26 E-value=3.8 Score=26.47 Aligned_cols=31 Identities=32% Similarity=0.243 Sum_probs=23.4
Q ss_pred HHHHHhhhhCCHHHHHHHHHHHHhhCCCCCCc
Q 007519 507 LLGACGFCEGNAEIAEHAAKRLLELDPLNAPA 538 (600)
Q Consensus 507 l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 538 (600)
+.-++. +.|+++.|.+..+.+++.+|+|..+
T Consensus 7 lAig~y-kl~~Y~~A~~~~~~lL~~eP~N~Qa 37 (53)
T PF14853_consen 7 LAIGHY-KLGEYEKARRYCDALLEIEPDNRQA 37 (53)
T ss_dssp HHHHHH-HTT-HHHHHHHHHHHHHHTTS-HHH
T ss_pred HHHHHH-HhhhHHHHHHHHHHHHhhCCCcHHH
Confidence 334556 8999999999999999999965543
No 341
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=81.17 E-value=11 Score=27.83 Aligned_cols=60 Identities=10% Similarity=0.019 Sum_probs=42.4
Q ss_pred hhHHHHHHHHHHHCCCCCChhHHHHHHHHHhcccchhhhHHHHHHHh-hhcCCCchhHHHHHH
Q 007519 313 FVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLM-KTESESDLILENCLI 374 (600)
Q Consensus 313 ~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~l~ 374 (600)
.=++.+-++.+....+.|++......+++|.+.+++..|.++++-+. +.+. +...|..++
T Consensus 23 ~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~--~~~~y~~~l 83 (103)
T cd00923 23 GWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA--HKEIYPYIL 83 (103)
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--chhhHHHHH
Confidence 33566677777777788888888888888888888888888888555 3332 233455444
No 342
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=80.83 E-value=41 Score=30.85 Aligned_cols=49 Identities=14% Similarity=0.139 Sum_probs=21.5
Q ss_pred HHHhcCChHHHHHHHhhCCC---CChhhHHHHHHHHHhCCChhHHHHHHHHH
Q 007519 275 GYLSVGQVSNAYYLFHNMPD---RDAVAWTAMISGLVQNELFVEATYLFMEM 323 (600)
Q Consensus 275 ~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m 323 (600)
.|..+|.+.+|.++.+.... -+...|..++..+...|+--.+...++.+
T Consensus 288 ~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 288 AYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 34444444444444444433 12334444444444444444444444433
No 343
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=80.35 E-value=2.6 Score=31.03 Aligned_cols=49 Identities=24% Similarity=0.116 Sum_probs=23.5
Q ss_pred HHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCC--CCcHHHHhHHHHhhCCc
Q 007519 503 IWGALLGACGFCEGNAEIAEHAAKRLLELDPLN--APAHVVLCNIYAASGRH 552 (600)
Q Consensus 503 ~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~ 552 (600)
....+...+. ..|+++.|+..+-.+++.+|+. ...-..++.++.-.|.-
T Consensus 24 ar~~lA~~~~-~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~ 74 (90)
T PF14561_consen 24 ARYALADALL-AAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPG 74 (90)
T ss_dssp HHHHHHHHHH-HTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT
T ss_pred HHHHHHHHHH-HCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCC
Confidence 3344444444 5566666666666666554432 34444555555555553
No 344
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=80.03 E-value=39 Score=32.73 Aligned_cols=55 Identities=22% Similarity=0.121 Sum_probs=40.8
Q ss_pred HHHhhhhCCHHHHHHHHHHHHhhCCC-CCCcHHHHhHHHH-hhCCcHHHHHHHHHHhh
Q 007519 509 GACGFCEGNAEIAEHAAKRLLELDPL-NAPAHVVLCNIYA-ASGRHVEEHKLRMDMGL 564 (600)
Q Consensus 509 ~~~~~~~g~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~ 564 (600)
..+. +.|-+..|.+..+-++.++|. ||......++.|. +.++++--+++.+....
T Consensus 111 ~~L~-~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 111 QSLG-RRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred HHHH-hcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 3455 778888888888888888887 7777777777765 66777777776665544
No 345
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=79.70 E-value=14 Score=31.79 Aligned_cols=75 Identities=23% Similarity=0.161 Sum_probs=54.2
Q ss_pred hhcCChHHHHHHHHhCCCCC--CHHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCC----CCCcHHHHhHHHHhhCCcH
Q 007519 480 GRAGKIKEAEEFVLRLPFEP--DHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPL----NAPAHVVLCNIYAASGRHV 553 (600)
Q Consensus 480 ~~~g~~~~A~~~~~~~~~~p--~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~ 553 (600)
.+.|+ ++|.+.|-.+...| +...+-..++.+. ...|.++++.++-+++++.+. |+.++..|+.++.+.|+++
T Consensus 118 sr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY-~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e 195 (203)
T PF11207_consen 118 SRFGD-QEALRRFLQLEGTPELETAELQYALATYY-TKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYE 195 (203)
T ss_pred hccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHH-HccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchh
Confidence 34454 66777776665333 3344445555555 688999999999999995432 6788999999999999998
Q ss_pred HHH
Q 007519 554 EEH 556 (600)
Q Consensus 554 ~A~ 556 (600)
.|-
T Consensus 196 ~AY 198 (203)
T PF11207_consen 196 QAY 198 (203)
T ss_pred hhh
Confidence 874
No 346
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=79.65 E-value=5.6 Score=33.38 Aligned_cols=60 Identities=15% Similarity=0.275 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHhhcCCCCC-cchHHHHHHHHhhcC----C-------hHHHHHHHHhCC-CCCCHHHHHHHHHHHh
Q 007519 450 SRGWELFNAMFDVYKIQPG-PEHYVSMINLLGRAG----K-------IKEAEEFVLRLP-FEPDHRIWGALLGACG 512 (600)
Q Consensus 450 ~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g----~-------~~~A~~~~~~~~-~~p~~~~~~~l~~~~~ 512 (600)
++|+.-|++++ .+.|+ ..++.+++.+|...+ + +++|.+.|++.. .+|+...|+..+..+.
T Consensus 52 edAisK~eeAL---~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~~ 124 (186)
T PF06552_consen 52 EDAISKFEEAL---KINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMAA 124 (186)
T ss_dssp HHHHHHHHHHH---HH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHH---hcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 33444444444 35775 467777777776544 2 333444444433 6788888887777654
No 347
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=79.56 E-value=9.9 Score=35.29 Aligned_cols=92 Identities=20% Similarity=0.100 Sum_probs=70.7
Q ss_pred cchHHHHHHHHhhcCChHHHHHHHHhCC----CCCC--HHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCCCcHHHH
Q 007519 469 PEHYVSMINLLGRAGKIKEAEEFVLRLP----FEPD--HRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVL 542 (600)
Q Consensus 469 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~--~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 542 (600)
+..|--=+.-|.+..++..|...|.+-. ..|+ ...|++-..+-. ..|++..++.-..+++.++|.+...|..=
T Consensus 81 Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~-~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~ 159 (390)
T KOG0551|consen 81 AENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQL-YLGNYRSALNDCSAALKLKPTHLKAYIRG 159 (390)
T ss_pred HHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHH-HHHHHHHHHHHHHHHHhcCcchhhhhhhh
Confidence 3345555677889999999999997753 3343 334555555444 78999999999999999999999999999
Q ss_pred hHHHHhhCCcHHHHHHHHH
Q 007519 543 CNIYAASGRHVEEHKLRMD 561 (600)
Q Consensus 543 ~~~~~~~g~~~~A~~~~~~ 561 (600)
+.++....++++|..+.++
T Consensus 160 Akc~~eLe~~~~a~nw~ee 178 (390)
T KOG0551|consen 160 AKCLLELERFAEAVNWCEE 178 (390)
T ss_pred hHHHHHHHHHHHHHHHHhh
Confidence 9999999997777765543
No 348
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=79.52 E-value=71 Score=31.94 Aligned_cols=58 Identities=16% Similarity=0.088 Sum_probs=42.2
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCC--ChhHHHHHHHHhcccCchHHHHHHHHHHH
Q 007519 402 NSMVMGFSHHGLANETLKVFESMLESGTHP--NSVTFLGILSACSHAGLVSRGWELFNAMF 460 (600)
Q Consensus 402 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 460 (600)
..+..+..+.|+.++|++.+++|.+.. ++ +......|+.++...+.+.++..++.+.-
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~-p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd 322 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEF-PNLDNLNIRENLIEALLELQAYADVQALLAKYD 322 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhC-CccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 446667778888888888888887642 22 22355677888888888888888888764
No 349
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=78.71 E-value=5.4 Score=23.76 Aligned_cols=27 Identities=26% Similarity=0.478 Sum_probs=16.2
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHH
Q 007519 400 SWNSMVMGFSHHGLANETLKVFESMLE 426 (600)
Q Consensus 400 ~~~~l~~~~~~~~~~~~a~~~~~~m~~ 426 (600)
+++.+...|...|++++|..++++...
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 455666666666666666666666543
No 350
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=78.51 E-value=14 Score=27.67 Aligned_cols=60 Identities=8% Similarity=0.029 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHCCCCCChhHHHHHHHHHhcccchhhhHHHHHHHhhhcCCCchhHHHHHHH
Q 007519 315 EATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLIS 375 (600)
Q Consensus 315 ~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 375 (600)
+..+-++.+....+.|++......+++|.+.+++..|.++++-+... ..+...+|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K-~~~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK-CGNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TTT-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccChHHHHHHHHH
Confidence 55666677777778888888888888888888888888888755432 1122225555543
No 351
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=77.94 E-value=6.1 Score=34.14 Aligned_cols=124 Identities=16% Similarity=0.089 Sum_probs=81.8
Q ss_pred cCCCCChhHHHHHH--HHhcccCchHHHHHHHHHHHhhcCCCCC-cchHHHHHHHHhhcCChHHHHHHHHhC-CCCCCH-
Q 007519 427 SGTHPNSVTFLGIL--SACSHAGLVSRGWELFNAMFDVYKIQPG-PEHYVSMINLLGRAGKIKEAEEFVLRL-PFEPDH- 501 (600)
Q Consensus 427 ~~~~p~~~~~~~l~--~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~- 501 (600)
.+++|+...-...= ..|...|-...|.--|.... .+.|+ +.++|.|+--+...|+++.|.+.|+.. +..|..
T Consensus 57 ~~l~~eeRA~l~fERGvlYDSlGL~~LAR~DftQaL---ai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~ 133 (297)
T COG4785 57 RALTDEERAQLLFERGVLYDSLGLRALARNDFSQAL---AIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYN 133 (297)
T ss_pred ccCChHHHHHHHHHhcchhhhhhHHHHHhhhhhhhh---hcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcch
Confidence 34555554332222 23566777888887777665 56786 788999999999999999999999886 466643
Q ss_pred HHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCCCcHHHHhHHHHh--hCCcHHHHH
Q 007519 502 RIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAA--SGRHVEEHK 557 (600)
Q Consensus 502 ~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~--~g~~~~A~~ 557 (600)
.+..+-.-++. --|+++.|.+-+.+--.-+|+||. ...|.|.. .-+..+|..
T Consensus 134 Ya~lNRgi~~Y-Y~gR~~LAq~d~~~fYQ~D~~DPf---R~LWLYl~E~k~dP~~A~t 187 (297)
T COG4785 134 YAHLNRGIALY-YGGRYKLAQDDLLAFYQDDPNDPF---RSLWLYLNEQKLDPKQAKT 187 (297)
T ss_pred HHHhccceeee-ecCchHhhHHHHHHHHhcCCCChH---HHHHHHHHHhhCCHHHHHH
Confidence 22222222233 468999999988888888887763 23344443 345556666
No 352
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=77.72 E-value=80 Score=31.59 Aligned_cols=169 Identities=11% Similarity=0.069 Sum_probs=80.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHhcCC--CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccC
Q 007519 370 ENCLISMYAKCGVIDNAYNIFSNMV--SRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAG 447 (600)
Q Consensus 370 ~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g 447 (600)
..+++..+.....++-.+.+..+|. ..+-..+..++.+|... ..++-..+|+++.+.. -+......-+..+...+
T Consensus 69 l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~d--fnDvv~~ReLa~~yEki 145 (711)
T COG1747 69 LVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVEYD--FNDVVIGRELADKYEKI 145 (711)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhc--chhHHHHHHHHHHHHHh
Confidence 3445555555555555555555554 44455556666666665 3455566666665532 22222222222233335
Q ss_pred chHHHHHHHHHHHhhcCCCCC------cchHHHHHHHHhhcCChHHHHHHHHhCC----CCCCHHHHHHHHHHHhhhhCC
Q 007519 448 LVSRGWELFNAMFDVYKIQPG------PEHYVSMINLLGRAGKIKEAEEFVLRLP----FEPDHRIWGALLGACGFCEGN 517 (600)
Q Consensus 448 ~~~~a~~~~~~~~~~~~~~p~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~~~~~~~l~~~~~~~~g~ 517 (600)
+.+.+..+|.++... +-|. ...|..|...- ..+.+....+..++. ..--...+..+..-|. ...+
T Consensus 146 k~sk~a~~f~Ka~yr--fI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys-~~eN 220 (711)
T COG1747 146 KKSKAAEFFGKALYR--FIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYS-ENEN 220 (711)
T ss_pred chhhHHHHHHHHHHH--hcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhc-cccC
Confidence 666666666665542 2231 11222222211 334444554444443 1111222333333444 5556
Q ss_pred HHHHHHHHHHHHhhCCCCCCcHHHHhHHH
Q 007519 518 AEIAEHAAKRLLELDPLNAPAHVVLCNIY 546 (600)
Q Consensus 518 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 546 (600)
+.+|+++++.+++.+..|..+-..++.-+
T Consensus 221 ~~eai~Ilk~il~~d~k~~~ar~~~i~~l 249 (711)
T COG1747 221 WTEAIRILKHILEHDEKDVWARKEIIENL 249 (711)
T ss_pred HHHHHHHHHHHhhhcchhhhHHHHHHHHH
Confidence 66677776666666655555555554443
No 353
>PRK10941 hypothetical protein; Provisional
Probab=76.49 E-value=14 Score=33.92 Aligned_cols=52 Identities=25% Similarity=0.140 Sum_probs=32.2
Q ss_pred HHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCCCcHHHHhHHHHhhCCcHHHHH
Q 007519 505 GALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHK 557 (600)
Q Consensus 505 ~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 557 (600)
+.+-.++. +.++++.|+++.+.++.+.|+++.-+..-|.+|.+.|.+..|..
T Consensus 185 ~nLK~~~~-~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~ 236 (269)
T PRK10941 185 DTLKAALM-EEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALS 236 (269)
T ss_pred HHHHHHHH-HcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHH
Confidence 34444455 66666666666666666666666666666666666666666666
No 354
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.30 E-value=86 Score=31.17 Aligned_cols=381 Identities=13% Similarity=0.092 Sum_probs=179.3
Q ss_pred hHHHHHHHhcC--ChhhHHHHhccCCC---CC-c--chHHHHHHHH-HcCCChhHHHHHhhhc-------CCC-C--hhh
Q 007519 15 TSSITKYSKRG--FIDEAKALFQLMPQ---RN-V--VSYNAMLSGF-LQNGRLSEARRLFEEM-------PER-N--VVS 75 (600)
Q Consensus 15 ~~l~~~~~~~g--~~~~A~~~~~~~~~---~~-~--~~~~~l~~~~-~~~~~~~~A~~~~~~~-------~~~-~--~~~ 75 (600)
-.++..+...| +...+++.++.... |+ + .+-..|...+ .-..+++.|..-+++. +.- | ..+
T Consensus 11 lGlAe~~rt~~PPkIkk~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydvKf~a 90 (629)
T KOG2300|consen 11 LGLAEHFRTSGPPKIKKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDVKFQA 90 (629)
T ss_pred HHHHHHHhhcCChhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhhhhHH
Confidence 34555666666 66677777776653 22 1 1222233322 2345566555555544 321 2 247
Q ss_pred HHHHHHHHHhcC-ChHHHHHHhhcCCC--CCceeHH-----HHHHHHHHCCChhHHHHHhhcCCC-CCc--ccHHHHHHH
Q 007519 76 WTAMICGLADAG-RVCEARKLFEEMPE--RNVVSWN-----SMVVGLIRNGELNEARKVFNSMPI-KNV--ISWNAMIAG 144 (600)
Q Consensus 76 ~~~l~~~~~~~g-~~~~A~~~~~~~~~--~~~~~~~-----~l~~~~~~~~~~~~a~~~~~~~~~-~~~--~~~~~l~~~ 144 (600)
++.|...|.... .+..+..++++..+ .+...|. .|+....-..|+..|.+++.--.. .|. ..|..++..
T Consensus 91 ~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~wsckllfQLaql~~idkD~~sA~elLavga~sAd~~~~~ylr~~ft 170 (629)
T KOG2300|consen 91 ASLLAHLHHQLAQSFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHIIDKDFPSALELLAVGAESADHICFPYLRMLFT 170 (629)
T ss_pred HHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhhhccchhHHHHHhccccccchhhhHHHHHHHH
Confidence 788888888766 77888888877765 3333333 366777788899999998665443 222 233333322
Q ss_pred HHhcCCHhHHHHHHHhcccCCchhHHHHHHHHHhc-----CC--hhHHHHHHccCCCCCcchHHHHHHHHHhcCChhHHH
Q 007519 145 YVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRA-----GE--VEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESL 217 (600)
Q Consensus 145 ~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~-----g~--~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 217 (600)
+... .-.+.++|......++..+... ++ -.+.+++| -.+.-+..|...|+...+.
T Consensus 171 ls~~---------~ll~me~d~~dV~~ll~~~~qi~~n~~sdk~~~E~LkvF---------yl~lql~yy~~~gq~rt~k 232 (629)
T KOG2300|consen 171 LSML---------MLLIMERDDYDVEKLLQRCGQIWQNISSDKTQKEMLKVF---------YLVLQLSYYLLPGQVRTVK 232 (629)
T ss_pred HHHH---------HHHHhCccHHHHHHHHHHHHHHHhccCCChHHHHHHHHH---------HHHHHHHHHhcccchhhhH
Confidence 2110 0000122222222222221110 00 01111111 1222234455667777777
Q ss_pred HHHHHHHhhhcCCCCC------------ChhhHHHHHHHHHhcCChhhHHHHhcccCCCCchhHHHHHHHHHh--cCChH
Q 007519 218 LLFIEMKGICDNGNNC------------NVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLS--VGQVS 283 (600)
Q Consensus 218 ~~~~~~~~~~~~~~~~------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~ 283 (600)
..++++......+..+ ....+..+-+ +.+-.+ ..-..+...+..+|.+ ..-.|
T Consensus 233 ~~lkQLQ~siqtist~~~~h~e~ilgsps~~l~~wlpk---------eqicaL----V~l~tv~hsm~~gy~~~~~K~tD 299 (629)
T KOG2300|consen 233 PALKQLQDSIQTISTSSRGHDEKILGSPSPILFEWLPK---------EQICAL----VYLVTVIHSMPAGYFKKAQKYTD 299 (629)
T ss_pred HHHHHHHHHHhccCCCCCCccccccCCCChHHHhhccH---------hhhHhh----hhhhHHhhhhhhHHHHHHHHHHH
Confidence 7777666542222222 1111111111 000000 0000111122233322 12345
Q ss_pred HHHHHHhhCCCCC--h--------hhHHHHHHHHHhCCChhHHHHHHHHHHHCCC-CCCh-------hHHHHHHH-HHhc
Q 007519 284 NAYYLFHNMPDRD--A--------VAWTAMISGLVQNELFVEATYLFMEMRAHGV-PPLN-------ATFSVLFG-AAGA 344 (600)
Q Consensus 284 ~A~~~~~~~~~~~--~--------~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~~-------~~~~~l~~-~~~~ 344 (600)
+++...++.+..| . .+...++.+-.-.|++.+|++-...|.+.-. .|.+ .....++. -|..
T Consensus 300 e~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~s 379 (629)
T KOG2300|consen 300 EAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHS 379 (629)
T ss_pred HHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhh
Confidence 5555555555433 1 1222333334557889999888888876421 2321 12233333 2345
Q ss_pred ccchhhhHHHHHHHhhhcCCCchhHH--HHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHH--------HHH--HHhcC
Q 007519 345 TANIDLGRQIHCVLMKTESESDLILE--NCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSM--------VMG--FSHHG 412 (600)
Q Consensus 345 ~~~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l--------~~~--~~~~~ 412 (600)
.+..+.|..-|..+.+.-...|...+ ..+.-.|.+.|+-+.-.++++.+.+++..++..- +.+ ....+
T Consensus 380 v~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn 459 (629)
T KOG2300|consen 380 VNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQN 459 (629)
T ss_pred cchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhc
Confidence 66777777766655554333333222 2345567777777777777777766654333221 111 12456
Q ss_pred ChHHHHHHHHHHHH
Q 007519 413 LANETLKVFESMLE 426 (600)
Q Consensus 413 ~~~~a~~~~~~m~~ 426 (600)
++.+|...+++-.+
T Consensus 460 ~lnEaK~~l~e~Lk 473 (629)
T KOG2300|consen 460 DLNEAKRFLRETLK 473 (629)
T ss_pred cHHHHHHHHHHHHh
Confidence 66666666666544
No 355
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=75.51 E-value=5.1 Score=22.27 Aligned_cols=26 Identities=12% Similarity=0.011 Sum_probs=19.1
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhh
Q 007519 201 TAMIGGFAWNGFHKESLLLFIEMKGI 226 (600)
Q Consensus 201 ~~li~~~~~~~~~~~a~~~~~~~~~~ 226 (600)
-.+..++.+.|++++|.+.|+++...
T Consensus 4 ~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 4 YRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 34566677778888888888888765
No 356
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.43 E-value=26 Score=32.40 Aligned_cols=96 Identities=9% Similarity=0.099 Sum_probs=62.0
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHhcCC-CCChh-----hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHH
Q 007519 366 DLILENCLISMYAKCGVIDNAYNIFSNMV-SRDLV-----SWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGI 439 (600)
Q Consensus 366 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~~~-----~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 439 (600)
+..+...++.......+++.+...+-++. .|+.. +-...++ ++..-++++++.++..=...|+-||..+++.+
T Consensus 63 s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~ir-lllky~pq~~i~~l~npIqYGiF~dqf~~c~l 141 (418)
T KOG4570|consen 63 SSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIR-LLLKYDPQKAIYTLVNPIQYGIFPDQFTFCLL 141 (418)
T ss_pred ceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHH-HHHccChHHHHHHHhCcchhccccchhhHHHH
Confidence 34444445555555666777777666655 22210 1111122 23344677888888888888888888888888
Q ss_pred HHHhcccCchHHHHHHHHHHHhh
Q 007519 440 LSACSHAGLVSRGWELFNAMFDV 462 (600)
Q Consensus 440 ~~~~~~~g~~~~a~~~~~~~~~~ 462 (600)
++.+.+.+++..|.++.-.++..
T Consensus 142 ~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 142 MDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred HHHHHhcccHHHHHHHHHHHHHH
Confidence 88888888888888877776654
No 357
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=75.40 E-value=56 Score=28.63 Aligned_cols=72 Identities=14% Similarity=0.152 Sum_probs=52.2
Q ss_pred HHHHHHHhcccCchHHHHHHHHHHHhhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHhCC-CCC----CHHHHHHHHH
Q 007519 436 FLGILSACSHAGLVSRGWELFNAMFDVYKIQP-GPEHYVSMINLLGRAGKIKEAEEFVLRLP-FEP----DHRIWGALLG 509 (600)
Q Consensus 436 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p----~~~~~~~l~~ 509 (600)
....+..+.+.+.+++++...+.-++. +| |...-..++..|+-.|+|++|..-++-.. +.| ....|..++.
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVka---kPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir 80 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKA---KPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIR 80 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhc---CCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHH
Confidence 344456677788899999888776653 66 67778889999999999999987766543 333 4556666655
Q ss_pred H
Q 007519 510 A 510 (600)
Q Consensus 510 ~ 510 (600)
+
T Consensus 81 ~ 81 (273)
T COG4455 81 C 81 (273)
T ss_pred H
Confidence 4
No 358
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=75.18 E-value=1.1e+02 Score=32.28 Aligned_cols=183 Identities=14% Similarity=0.138 Sum_probs=92.9
Q ss_pred hHHHHHHHhhhcCCCc---hhHHHHHHHHHHhcCChHHHHHHHhcCC-CCChh----------hHHHHHHHHHhcCChHH
Q 007519 351 GRQIHCVLMKTESESD---LILENCLISMYAKCGVIDNAYNIFSNMV-SRDLV----------SWNSMVMGFSHHGLANE 416 (600)
Q Consensus 351 a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~~~----------~~~~l~~~~~~~~~~~~ 416 (600)
-..++.+|.++--.|+ ..+...++-.|....+++...++.+.+. -||.. .|.-.++---+-|+-++
T Consensus 182 l~~~L~~mR~RlDnp~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~iP~t~~vve~~nv~f~YaFALNRRNr~GDRak 261 (1226)
T KOG4279|consen 182 LNDYLDKMRTRLDNPDVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKRIPDTLKVVETHNVRFHYAFALNRRNRPGDRAK 261 (1226)
T ss_pred HHHHHHHHHhhcCCccccCHHHHHHHHhhhccccchHHHHHHHHHHHhCcchhhhhccCceEEEeeehhcccCCCccHHH
Confidence 3344555555443343 3344455566666777777777766654 22211 12111222224467777
Q ss_pred HHHHHHHHHHc--CCCCChhH-----HHHHH--HHhcccCchHHHHHHHHHHHhhcCCCCCcchHHHHHHHHhhcCC-hH
Q 007519 417 TLKVFESMLES--GTHPNSVT-----FLGIL--SACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGK-IK 486 (600)
Q Consensus 417 a~~~~~~m~~~--~~~p~~~~-----~~~l~--~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~-~~ 486 (600)
|+...-.+.+. .+.||..+ |.-+. ..|...+..+.|.++|+++. .+.|....--.+...+...|. ++
T Consensus 262 AL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaF---eveP~~~sGIN~atLL~aaG~~Fe 338 (1226)
T KOG4279|consen 262 ALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAF---EVEPLEYSGINLATLLRAAGEHFE 338 (1226)
T ss_pred HHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHh---ccCchhhccccHHHHHHHhhhhcc
Confidence 77776666654 24566543 22221 33455667788888888775 456754332233333333332 22
Q ss_pred HHHHH------HHhC-CCCCCH------HHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCCC
Q 007519 487 EAEEF------VLRL-PFEPDH------RIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAP 537 (600)
Q Consensus 487 ~A~~~------~~~~-~~~p~~------~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 537 (600)
...++ +..+ ..+... +-....+.+-. -.+|+.+|++..+.+++++|....
T Consensus 339 ns~Elq~IgmkLn~LlgrKG~leklq~YWdV~~y~~asV-LAnd~~kaiqAae~mfKLk~P~WY 401 (1226)
T KOG4279|consen 339 NSLELQQIGMKLNSLLGRKGALEKLQEYWDVATYFEASV-LANDYQKAIQAAEMMFKLKPPVWY 401 (1226)
T ss_pred chHHHHHHHHHHHHHhhccchHHHHHHHHhHHHhhhhhh-hccCHHHHHHHHHHHhccCCceeh
Confidence 22111 1111 011110 01122333334 568999999999999999985443
No 359
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=75.12 E-value=32 Score=25.69 Aligned_cols=61 Identities=21% Similarity=0.327 Sum_probs=45.3
Q ss_pred HHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHH
Q 007519 374 ISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFL 437 (600)
Q Consensus 374 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~ 437 (600)
+..+...|++++|..+.+....||...|-++-. .+.|..+++..-+.+|...| .|....|.
T Consensus 46 lsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg-~p~lq~Fa 106 (115)
T TIGR02508 46 LSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAASG-DPRLQTFV 106 (115)
T ss_pred HHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC-CHHHHHHH
Confidence 445678899999999999998899988876643 45677777777777887766 55554443
No 360
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=74.67 E-value=7.4 Score=27.46 Aligned_cols=44 Identities=14% Similarity=-0.034 Sum_probs=32.1
Q ss_pred hhCCHHHHHHHHHHHHhhCCCCC---CcHHHHhHHHHhhCCcHHHHH
Q 007519 514 CEGNAEIAEHAAKRLLELDPLNA---PAHVVLCNIYAASGRHVEEHK 557 (600)
Q Consensus 514 ~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~ 557 (600)
...+.++|+..++++++..++.+ .++..|+.+|...|++.+.++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~ 64 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLA 64 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677888888888888766444 344456677788888888877
No 361
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=74.60 E-value=1.2e+02 Score=32.11 Aligned_cols=159 Identities=9% Similarity=0.038 Sum_probs=82.5
Q ss_pred CcchHHHHHHHHH-hcCChhHHHHHHHHHHhhhcCCCCCChh-----hHHHHHHHHHhcCChhhHHHHhcccCCC----C
Q 007519 196 NVVSWTAMIGGFA-WNGFHKESLLLFIEMKGICDNGNNCNVQ-----SCNSMINGYIRFGRLEEAQNLFDTVPVR----D 265 (600)
Q Consensus 196 ~~~~~~~li~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~-----~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~ 265 (600)
+..++..+...+. ...+++.|...+.+.....+. ++.. .-..++..+.+.+... |...+++.... .
T Consensus 58 ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~---~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~ 133 (608)
T PF10345_consen 58 EARVRLRLASILLEETENLDLAETYLEKAILLCER---HRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYG 133 (608)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc---cchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccC
Confidence 3345666666666 567888888888877665222 2211 1223455555555544 77776665411 1
Q ss_pred chhHH----HH-HHHHHhcCChHHHHHHHhhCCC-------CChhhHHHHHHHH--HhCCChhHHHHHHHHHHHCCC---
Q 007519 266 EISWT----SM-IDGYLSVGQVSNAYYLFHNMPD-------RDAVAWTAMISGL--VQNELFVEATYLFMEMRAHGV--- 328 (600)
Q Consensus 266 ~~~~~----~l-~~~~~~~~~~~~A~~~~~~~~~-------~~~~~~~~li~~~--~~~g~~~~a~~~~~~m~~~g~--- 328 (600)
...|. -+ +..+...++...|.+.++.+.. +.+..+-.++.+. .+.+..+++++.++++.....
T Consensus 134 ~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q 213 (608)
T PF10345_consen 134 HSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQ 213 (608)
T ss_pred chhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcc
Confidence 11122 22 2222233677777777766543 1222333333332 345656777777777644322
Q ss_pred ------CCChhHHHHHHHHHh--cccchhhhHHHHHHH
Q 007519 329 ------PPLNATFSVLFGAAG--ATANIDLGRQIHCVL 358 (600)
Q Consensus 329 ------~p~~~~~~~l~~~~~--~~~~~~~a~~~~~~~ 358 (600)
.|...++..++..++ ..|++..+...++.+
T Consensus 214 ~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 214 LDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred cCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 224445666666443 455655666555543
No 362
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=74.05 E-value=7 Score=21.99 Aligned_cols=28 Identities=14% Similarity=0.083 Sum_probs=20.9
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhh
Q 007519 199 SWTAMIGGFAWNGFHKESLLLFIEMKGI 226 (600)
Q Consensus 199 ~~~~li~~~~~~~~~~~a~~~~~~~~~~ 226 (600)
+|..+...+...|++++|...|++..+.
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4666777777888888888888777754
No 363
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=73.77 E-value=12 Score=33.03 Aligned_cols=44 Identities=16% Similarity=0.001 Sum_probs=31.7
Q ss_pred hhCCHHHHHHHHHHHHhhCCCCCCcHHHHhHHHHhhCCcHHHHH
Q 007519 514 CEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHK 557 (600)
Q Consensus 514 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 557 (600)
..|++-++++.....+...|+|..+|..-+.+....=+.++|..
T Consensus 242 ~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~ 285 (329)
T KOG0545|consen 242 KKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKA 285 (329)
T ss_pred hHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHH
Confidence 66777777777777777777777777777777666666666666
No 364
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=73.57 E-value=1.3e+02 Score=31.91 Aligned_cols=23 Identities=9% Similarity=0.005 Sum_probs=14.6
Q ss_pred HHHHHHhhcCChHHHHHHHHhCC
Q 007519 474 SMINLLGRAGKIKEAEEFVLRLP 496 (600)
Q Consensus 474 ~l~~~~~~~g~~~~A~~~~~~~~ 496 (600)
..+.-+...|++++|..+|+-..
T Consensus 419 ~~A~~~e~~g~~~dAi~Ly~La~ 441 (613)
T PF04097_consen 419 QAAREAEERGRFEDAILLYHLAE 441 (613)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHTT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHh
Confidence 34445567777777777777765
No 365
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=73.34 E-value=86 Score=34.21 Aligned_cols=27 Identities=11% Similarity=0.188 Sum_probs=18.9
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHH
Q 007519 299 AWTAMISGLVQNELFVEATYLFMEMRA 325 (600)
Q Consensus 299 ~~~~li~~~~~~g~~~~a~~~~~~m~~ 325 (600)
-|..|+..|...|..++|+++|.+...
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d 532 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVD 532 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhc
Confidence 366677777777777777777777665
No 366
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=73.15 E-value=38 Score=30.84 Aligned_cols=87 Identities=9% Similarity=0.038 Sum_probs=46.3
Q ss_pred HHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhcccchhhhHHHHHHHhhhcCCCchhHHHHHHHHHHh----
Q 007519 304 ISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAK---- 379 (600)
Q Consensus 304 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---- 379 (600)
|.+++..++|.+++...-+--+.--+.........|-.|.+.+.+..+.++-....+..-.-+..-|..+++.|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLl 169 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLL 169 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHh
Confidence 5667777777777666555443222222334444455566666666666665544443333333345555555433
Q ss_pred -cCChHHHHHHH
Q 007519 380 -CGVIDNAYNIF 390 (600)
Q Consensus 380 -~~~~~~A~~~~ 390 (600)
.|.+++|+++.
T Consensus 170 PLG~~~eAeelv 181 (309)
T PF07163_consen 170 PLGHFSEAEELV 181 (309)
T ss_pred ccccHHHHHHHH
Confidence 45566665554
No 367
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=72.98 E-value=1e+02 Score=30.62 Aligned_cols=61 Identities=7% Similarity=-0.107 Sum_probs=32.7
Q ss_pred hHHHHHHHHHhcC-ChhHHHHHHHHHHhhhcCCCC-CChhhHHHHHHHHHhcCChhhHHHHhcc
Q 007519 199 SWTAMIGGFAWNG-FHKESLLLFIEMKGICDNGNN-CNVQSCNSMINGYIRFGRLEEAQNLFDT 260 (600)
Q Consensus 199 ~~~~li~~~~~~~-~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 260 (600)
++..|...+.... .+..+..++++..+. ..+++ ..-.....|+..+.-..++..|.+++..
T Consensus 90 a~SlLa~lh~~~~~s~~~~KalLrkaiel-sq~~p~wsckllfQLaql~~idkD~~sA~elLav 152 (629)
T KOG2300|consen 90 AASLLAHLHHQLAQSFPPAKALLRKAIEL-SQSVPYWSCKLLFQLAQLHIIDKDFPSALELLAV 152 (629)
T ss_pred HHHHHHHHHHHhcCCCchHHHHHHHHHHH-hcCCchhhHHHHHHHHHHHhhhccchhHHHHHhc
Confidence 4555555555544 566666677766665 22222 1222333455555566677777766543
No 368
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=72.14 E-value=56 Score=29.08 Aligned_cols=98 Identities=13% Similarity=0.065 Sum_probs=63.2
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCChhHH-HHHHHHhcccCchHHHHHHHHHHHhhcCCCCC-cchHHHHHHHHhhcCCh
Q 007519 408 FSHHGLANETLKVFESMLESGTHPNSVTF-LGILSACSHAGLVSRGWELFNAMFDVYKIQPG-PEHYVSMINLLGRAGKI 485 (600)
Q Consensus 408 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~-~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~ 485 (600)
|....++..|+..|.+... +.|+..+| ..=+.++.+..+++.+..--.+.+ .+.|+ +....-+...+.....+
T Consensus 20 ~f~~k~y~~ai~~y~raI~--~nP~~~~Y~tnralchlk~~~~~~v~~dcrral---ql~~N~vk~h~flg~~~l~s~~~ 94 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAIC--INPTVASYYTNRALCHLKLKHWEPVEEDCRRAL---QLDPNLVKAHYFLGQWLLQSKGY 94 (284)
T ss_pred ccchhhhchHHHHHHHHHh--cCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHH---hcChHHHHHHHHHHHHHHhhccc
Confidence 3445567888887777665 57777554 344556667778887777666665 45675 33444566677778888
Q ss_pred HHHHHHHHhC-------CCCCCHHHHHHHHHH
Q 007519 486 KEAEEFVLRL-------PFEPDHRIWGALLGA 510 (600)
Q Consensus 486 ~~A~~~~~~~-------~~~p~~~~~~~l~~~ 510 (600)
++|...+.+. +..|....+..+..+
T Consensus 95 ~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~a 126 (284)
T KOG4642|consen 95 DEAIKVLQRAYSLLREQPFTFGDDIPKALRDA 126 (284)
T ss_pred cHHHHHHHHHHHHHhcCCCCCcchHHHHHHHH
Confidence 8888877665 244445555655554
No 369
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=72.07 E-value=82 Score=29.05 Aligned_cols=262 Identities=9% Similarity=0.106 Sum_probs=0.0
Q ss_pred HHHHHhcCChhHHHHHHccCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHhcCChh
Q 007519 173 ISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLE 252 (600)
Q Consensus 173 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 252 (600)
+.......++++|.++...-...+...+..+..++.+..+..++.--.+.....++...+.....-.. -++
T Consensus 3 ~~~~L~~~df~~a~~ll~~~~~~~l~~L~~i~~~l~~l~~~~~~~i~~~~W~~~Fd~~WPlv~~~~~~---------yW~ 73 (292)
T PF13929_consen 3 LLKFLSKQDFDEANKLLQSNPENSLDPLKSIVSTLSQLPQSTEKKINIENWKKFFDSHWPLVDPSETA---------YWS 73 (292)
T ss_pred HHHHHHHhhHHHHHHHHccCCcchhHHHHHHHHHHHhCccccccccCHHHHHHHHHhcCCCCCCCccc---------hHH
Q ss_pred hHHHHhcccC--CCCchhHHHHHHHHHhcCC-------hHHHHHHHhh----CCCCChhhHHHHHHHHHhCCChhHHHHH
Q 007519 253 EAQNLFDTVP--VRDEISWTSMIDGYLSVGQ-------VSNAYYLFHN----MPDRDAVAWTAMISGLVQNELFVEATYL 319 (600)
Q Consensus 253 ~a~~~~~~~~--~~~~~~~~~l~~~~~~~~~-------~~~A~~~~~~----~~~~~~~~~~~li~~~~~~g~~~~a~~~ 319 (600)
.-.++|.-+- .|.......++.-|....+ -++-+.+++- +......-|..++ .+.....+|+.+
T Consensus 74 ~R~~Fl~lLn~~~p~~y~~~~~~~DYf~lK~s~g~~Lt~~Dli~FL~~~i~~~~~~k~~~Y~~LV---k~N~~Vv~aL~L 150 (292)
T PF13929_consen 74 LRLKFLKLLNIADPQNYSVRRFINDYFLLKKSMGCELTKEDLISFLKLVIINLSSNKSFNYWDLV---KRNKIVVEALKL 150 (292)
T ss_pred HHHHHHHHHhhcCcccCCHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhccccccchHHHHHH---HhhHHHHHHHHH
Q ss_pred HHHHHH-CCCCCChhHHHHHHHHHhcccchhhhHHHHH----HHhhhcCCCchhHHHHHHHHHHhcCChHHHHHHHhcCC
Q 007519 320 FMEMRA-HGVPPLNATFSVLFGAAGATANIDLGRQIHC----VLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMV 394 (600)
Q Consensus 320 ~~~m~~-~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 394 (600)
|+.... ..+--|..+...+++......+. .-..+++ .....+-.++..+...+++.+++.+++.+-.+++....
T Consensus 151 ~~~~~~~~~Ii~d~evislLL~sMv~~~~~-~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~ 229 (292)
T PF13929_consen 151 YDGLNPDESIIFDEEVISLLLKSMVIDENT-KLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQFWEQCI 229 (292)
T ss_pred hhccCcccceeeChHHHHHHHHHHHhcccc-chhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHHHHHHhc
Q ss_pred -----CCChhhHHHHHHHHHhcCChHHHHHHHHH-----HHHcCCCCChhHHHHHHHHhcccC
Q 007519 395 -----SRDLVSWNSMVMGFSHHGLANETLKVFES-----MLESGTHPNSVTFLGILSACSHAG 447 (600)
Q Consensus 395 -----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~-----m~~~~~~p~~~~~~~l~~~~~~~g 447 (600)
..|...|..+|......|+..-...+..+ ++..|+..+...-..+-..+...|
T Consensus 230 ~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~LF~~vd 292 (292)
T PF13929_consen 230 PNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSELFKKVD 292 (292)
T ss_pred ccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHHHHhcC
No 370
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=71.86 E-value=59 Score=27.32 Aligned_cols=120 Identities=14% Similarity=0.147 Sum_probs=73.2
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCChh-HHHHHHHHhcccCchHHHHHHHHHHHhhcCCCCCcchHH-----HHHHHHhh
Q 007519 408 FSHHGLANETLKVFESMLESGTHPNSV-TFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYV-----SMINLLGR 481 (600)
Q Consensus 408 ~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~-----~l~~~~~~ 481 (600)
+++.+..++|+.-|..+.+.|...=+. ............|+...|...|.++-.. .|.+.... .-..++..
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~d---t~~P~~~rd~ARlraa~lLvD 144 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAAD---TSIPQIGRDLARLRAAYLLVD 144 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhcc---CCCcchhhHHHHHHHHHHHhc
Confidence 355677888888888888776432221 1112233456778888888888888754 23222222 22345678
Q ss_pred cCChHHHHHHHHhCC--CCCCHHHHHHHHHHHhhhhCCHHHHHHHHHHHHh
Q 007519 482 AGKIKEAEEFVLRLP--FEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLE 530 (600)
Q Consensus 482 ~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~ 530 (600)
.|.+++....++-+. -.|-..+-...+....++.|++..|...|+++..
T Consensus 145 ~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 145 NGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred cccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 888888887777764 2332233333333333378888888888888766
No 371
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=71.45 E-value=8.4 Score=27.20 Aligned_cols=47 Identities=13% Similarity=0.094 Sum_probs=24.9
Q ss_pred ccCchHHHHHHHHHHHhhcCCCCC-cchHHHHHHHHhhcCChHHHHHH
Q 007519 445 HAGLVSRGWELFNAMFDVYKIQPG-PEHYVSMINLLGRAGKIKEAEEF 491 (600)
Q Consensus 445 ~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~ 491 (600)
.....++|+..|..+.++..-.|+ -.++..|+.+|+..|++.+++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666666654222222 33455556666666666665554
No 372
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=71.31 E-value=9.5 Score=23.50 Aligned_cols=24 Identities=13% Similarity=0.293 Sum_probs=15.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHc
Q 007519 404 MVMGFSHHGLANETLKVFESMLES 427 (600)
Q Consensus 404 l~~~~~~~~~~~~a~~~~~~m~~~ 427 (600)
+..+|...|+.+.|.+++++....
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Confidence 456666677777777777766654
No 373
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=70.29 E-value=1.7e+02 Score=32.04 Aligned_cols=56 Identities=20% Similarity=0.269 Sum_probs=41.3
Q ss_pred hhHHHHHHHhcCChhhHHHHhccCCCCCcchHHH-----HHH---HHHcCCChhHHHHHhhhcC
Q 007519 14 LTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNA-----MLS---GFLQNGRLSEARRLFEEMP 69 (600)
Q Consensus 14 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-----l~~---~~~~~~~~~~A~~~~~~~~ 69 (600)
+..-+..+....++++|..+-+....|++..... +.. -+..+|++++|.+.|+++.
T Consensus 310 ~~~qi~~lL~~k~fe~ai~L~e~~~~~~p~~~~~i~~~~~l~~a~~lf~q~~f~ea~~~F~~~~ 373 (877)
T KOG2063|consen 310 FEKQIQDLLQEKSFEEAISLAEILDSPNPKEKRQISCIKILIDAFELFLQKQFEEAMSLFEKSE 373 (877)
T ss_pred hHHHHHHHHHhhhHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhc
Confidence 6677888888888999999988888766553222 122 2457899999999999886
No 374
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=70.22 E-value=20 Score=25.91 Aligned_cols=60 Identities=10% Similarity=0.077 Sum_probs=31.9
Q ss_pred HHHHhcccCCchhHHHHHHHHH---hcCChhHHHHHHccCCCCCcchHHHHHHHHHhcCChhHH
Q 007519 156 VLFEEMEERNVVTWTSMISGYC---RAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKES 216 (600)
Q Consensus 156 ~~~~~~~~~~~~~~~~l~~~~~---~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 216 (600)
++++.+.+.+..+....-..-+ ..|+.+.|.++++.+. ..+..|..++.++...|.-+-|
T Consensus 23 ~v~d~ll~~~ilT~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 23 DVCDKCLEQGLLTEEDRNRIEAATENHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELA 85 (88)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHhccccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhh
Confidence 3344444444444443333333 4466666666666666 5666666666666666554443
No 375
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=70.12 E-value=3.7 Score=40.04 Aligned_cols=95 Identities=12% Similarity=0.114 Sum_probs=66.5
Q ss_pred HHHhcccCchHHHHHHHHHHHhhcCCCCC-cchHHHHHHHHhhcCChHHHHHHHHhC-CCCCCH-HHHHHHHHHHhhhhC
Q 007519 440 LSACSHAGLVSRGWELFNAMFDVYKIQPG-PEHYVSMINLLGRAGKIKEAEEFVLRL-PFEPDH-RIWGALLGACGFCEG 516 (600)
Q Consensus 440 ~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~~g 516 (600)
+......+.++.|..++.++++ +.|+ +..|..=..++.+.+++..|..=+.++ +..|.. ..|..-..+|. +.+
T Consensus 11 an~~l~~~~fd~avdlysKaI~---ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m-~l~ 86 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIE---LDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVM-ALG 86 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHh---cCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHH-hHH
Confidence 3445567788999999998885 4775 444444457788888888887665554 455643 34444455666 778
Q ss_pred CHHHHHHHHHHHHhhCCCCCCc
Q 007519 517 NAEIAEHAAKRLLELDPLNAPA 538 (600)
Q Consensus 517 ~~~~a~~~~~~~~~~~p~~~~~ 538 (600)
.+.+|+..++....+.|+++..
T Consensus 87 ~~~~A~~~l~~~~~l~Pnd~~~ 108 (476)
T KOG0376|consen 87 EFKKALLDLEKVKKLAPNDPDA 108 (476)
T ss_pred HHHHHHHHHHHhhhcCcCcHHH
Confidence 8889999999999899955543
No 376
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=69.94 E-value=90 Score=28.64 Aligned_cols=159 Identities=13% Similarity=0.044 Sum_probs=72.3
Q ss_pred hcCChHHHHHHHhhCCCCChhhHHHHHHHHHhCCChhHHHH----HHHHHHHCCCCCChhHHHHHHHHHhcccchh-hhH
Q 007519 278 SVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATY----LFMEMRAHGVPPLNATFSVLFGAAGATANID-LGR 352 (600)
Q Consensus 278 ~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~----~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~-~a~ 352 (600)
+.+++++|++++.. =...+.+.|+...|-+ +++-..+.++++|......++..+...+.-+ .-.
T Consensus 2 ~~kky~eAidLL~~-----------Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~ 70 (260)
T PF04190_consen 2 KQKKYDEAIDLLYS-----------GALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERK 70 (260)
T ss_dssp HTT-HHHHHHHHHH-----------HHHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHH
T ss_pred ccccHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHH
Confidence 34556666655432 1233455555544333 3344444566677666666665554433211 122
Q ss_pred HHHHHHh---hhc--CCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 007519 353 QIHCVLM---KTE--SESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLES 427 (600)
Q Consensus 353 ~~~~~~~---~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 427 (600)
.+.+.+. +.+ ..-++.....+...|.+.|++.+|+..|-....++...+..++......|...++
T Consensus 71 ~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~---------- 140 (260)
T PF04190_consen 71 KFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEA---------- 140 (260)
T ss_dssp HHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--H----------
T ss_pred HHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcch----------
Confidence 2222222 222 1235677778888889999998888776554443333332233222222222221
Q ss_pred CCCCChhHHHHHHHHhcccCchHHHHHHHHHHHhh
Q 007519 428 GTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDV 462 (600)
Q Consensus 428 ~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 462 (600)
+...-. .+--|.-.|+...|...+....+.
T Consensus 141 ----dlfi~R-aVL~yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 141 ----DLFIAR-AVLQYLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp ----HHHHHH-HHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred ----hHHHHH-HHHHHHHhcCHHHHHHHHHHHHHH
Confidence 111112 222345567777777777666543
No 377
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=68.23 E-value=1.3e+02 Score=29.84 Aligned_cols=92 Identities=17% Similarity=0.104 Sum_probs=56.2
Q ss_pred hcCChHHHHHHHHhCC-CCCCHHH----HHHHHHHHhhhhCCH------HHHHHHHHHHHhhCCCCCCcHHHHhHHHHhh
Q 007519 481 RAGKIKEAEEFVLRLP-FEPDHRI----WGALLGACGFCEGNA------EIAEHAAKRLLELDPLNAPAHVVLCNIYAAS 549 (600)
Q Consensus 481 ~~g~~~~A~~~~~~~~-~~p~~~~----~~~l~~~~~~~~g~~------~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 549 (600)
..|+.++|+.++-.++ ++||..- |..++..+....+|- -+-+.+.++++-.+..|.......+.-....
T Consensus 710 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 (831)
T PRK15180 710 TEGRLDEALSVLISLKRIEPDVSRLMREYKQIIRLFNESRKDGGSTITSYEHLDYAKKLLVFDSENAYALKYAALNAMHL 789 (831)
T ss_pred ccccHHHHHHHHHhhhccCccHHHHHHHHHHHHHHhhhhcccCCcccchhhhHhhhhhheeeccchHHHHHHHHhhHhHH
Confidence 4578899999887775 7787653 444555443122221 2234444455545555554444333334567
Q ss_pred CCcHHHHHHHHHHhhcCCccCCC
Q 007519 550 GRHVEEHKLRMDMGLKGVRKVPG 572 (600)
Q Consensus 550 g~~~~A~~~~~~~~~~~~~~~~~ 572 (600)
.++..|.++|+.+++-+.+.+|-
T Consensus 790 ~~~~~~~~~~~~~~~~~~~~~~~ 812 (831)
T PRK15180 790 RDYTQALQYWQRLEKVNGPTEPV 812 (831)
T ss_pred HHHHHHHHHHHHHHhccCCCcch
Confidence 88999999999998877766663
No 378
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=67.58 E-value=9.7 Score=20.92 Aligned_cols=29 Identities=24% Similarity=0.241 Sum_probs=21.7
Q ss_pred CCHHHHHHHHHHHHhhCCCCCCcHHHHhH
Q 007519 516 GNAEIAEHAAKRLLELDPLNAPAHVVLCN 544 (600)
Q Consensus 516 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 544 (600)
|+.+.+..+|++++...|.++..+...+.
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 46778888888888888877777666554
No 379
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=67.10 E-value=27 Score=27.35 Aligned_cols=59 Identities=15% Similarity=0.228 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHcCCCCChhHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCCCcchHHHHH
Q 007519 416 ETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMI 476 (600)
Q Consensus 416 ~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~ 476 (600)
+..+-++.+....+.|++......+++|-+.+++..|.++|+-++.+ +.+....|-.++
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K--~g~~k~~Y~y~v 125 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK--CGAQKQVYPYYV 125 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh--cccHHHHHHHHH
Confidence 45566667777778899999999999999999999999999988764 334333455443
No 380
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=66.55 E-value=2e+02 Score=31.23 Aligned_cols=167 Identities=11% Similarity=0.096 Sum_probs=81.8
Q ss_pred HHHHHhcCCHhHHHHHHHhcccCCc--hhHHHHHHHHHhcCChhHHHHHHccCCCCCcchHHHHHHHHHhcCChhHHHHH
Q 007519 142 IAGYVECCMMGEAIVLFEEMEERNV--VTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLL 219 (600)
Q Consensus 142 ~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 219 (600)
=+.|...|+++.|.++-+.- |+. .++..-.+.|.+.+++..|-+++-++ ...+..+.--+....+.+.-..+
T Consensus 365 Wk~yLd~g~y~kAL~~ar~~--p~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t----~~~FEEVaLKFl~~~~~~~L~~~ 438 (911)
T KOG2034|consen 365 WKTYLDKGEFDKALEIARTR--PDALETVLLKQADFLFQDKEYLRAAEIYAET----LSSFEEVALKFLEINQERALRTF 438 (911)
T ss_pred HHHHHhcchHHHHHHhccCC--HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHh----hhhHHHHHHHHHhcCCHHHHHHH
Confidence 35566777777777665543 221 23334445666777777777777766 23344444444444444422222
Q ss_pred HHHHHhhhcCCCCCChhhHH-----HHHHHHH-hcCChh----hHHHHhccc--------C-----CCCchhHHHHHHHH
Q 007519 220 FIEMKGICDNGNNCNVQSCN-----SMINGYI-RFGRLE----EAQNLFDTV--------P-----VRDEISWTSMIDGY 276 (600)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~-----~l~~~~~-~~~~~~----~a~~~~~~~--------~-----~~~~~~~~~l~~~~ 276 (600)
+.+=++ .++|...+-. .++..|. +.++.+ ++..-++.- . ..+.....+..+.+
T Consensus 439 L~KKL~----~lt~~dk~q~~~Lv~WLlel~L~~Ln~l~~~de~~~en~~~~~~~~~re~~~~~~~~~~~~nretv~~l~ 514 (911)
T KOG2034|consen 439 LDKKLD----RLTPEDKTQRDALVTWLLELYLEQLNDLDSTDEEALENWRLEYDEVQREFSKFLVLHKDELNRETVYQLL 514 (911)
T ss_pred HHHHHh----hCChHHHHHHHHHHHHHHHHHHHHHhcccccChhHHHHHHHHHHHHHHHHHHHHHhhHHhhhHHHHHHHH
Confidence 222222 2333332222 2233322 223332 111111100 0 11222233444455
Q ss_pred HhcCChHHHHHHHhhCCCCChhhHHHHHHHHHhCCChhHHHHHHHHH
Q 007519 277 LSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEM 323 (600)
Q Consensus 277 ~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 323 (600)
...|+.++...+-.-+. .|..++..+++.|.+++|++++..-
T Consensus 515 ~~~~~~e~ll~fA~l~~-----d~~~vv~~~~q~e~yeeaLevL~~~ 556 (911)
T KOG2034|consen 515 ASHGRQEELLQFANLIK-----DYEFVVSYWIQQENYEEALEVLLNQ 556 (911)
T ss_pred HHccCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 55666666655543332 4667788888888888888887643
No 381
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=66.40 E-value=61 Score=29.61 Aligned_cols=21 Identities=19% Similarity=0.218 Sum_probs=9.1
Q ss_pred HHHHHhcCChHHHHHHHHHHH
Q 007519 405 VMGFSHHGLANETLKVFESML 425 (600)
Q Consensus 405 ~~~~~~~~~~~~a~~~~~~m~ 425 (600)
|-.|.+.+.+..+.++-..-.
T Consensus 125 ILLysKv~Ep~amlev~~~WL 145 (309)
T PF07163_consen 125 ILLYSKVQEPAAMLEVASAWL 145 (309)
T ss_pred HHHHHHhcCHHHHHHHHHHHH
Confidence 333444444444444444433
No 382
>PRK10941 hypothetical protein; Provisional
Probab=65.05 E-value=24 Score=32.37 Aligned_cols=68 Identities=12% Similarity=-0.009 Sum_probs=47.4
Q ss_pred HHHHHHHHhhcCChHHHHHHHHhCC-CCCC-HHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCCCcHH
Q 007519 472 YVSMINLLGRAGKIKEAEEFVLRLP-FEPD-HRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHV 540 (600)
Q Consensus 472 ~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 540 (600)
.+.+-.+|.+.++++.|+++.+.+. +.|+ +.-+.--.-.+. +.|.+..|..-++.-++..|++|.+-.
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~-qL~c~~~A~~DL~~fl~~~P~dp~a~~ 253 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYA-QLDCEHVALSDLSYFVEQCPEDPISEM 253 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCcHHHHHHHHHHHHhCCCchhHHH
Confidence 4446667778888888888887764 4454 444555555666 778888888888888888886665443
No 383
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=64.65 E-value=96 Score=30.40 Aligned_cols=18 Identities=11% Similarity=0.187 Sum_probs=8.6
Q ss_pred hcCChHHHHHHHHHHHHc
Q 007519 410 HHGLANETLKVFESMLES 427 (600)
Q Consensus 410 ~~~~~~~a~~~~~~m~~~ 427 (600)
..+++..|.++|+.+...
T Consensus 143 n~~~y~aA~~~l~~l~~r 160 (379)
T PF09670_consen 143 NRYDYGAAARILEELLRR 160 (379)
T ss_pred hcCCHHHHHHHHHHHHHh
Confidence 444455555555544443
No 384
>PF13934 ELYS: Nuclear pore complex assembly
Probab=64.06 E-value=1.1e+02 Score=27.40 Aligned_cols=101 Identities=13% Similarity=0.143 Sum_probs=50.3
Q ss_pred hHHHHHHHH--HhcCChHHHHHHhhcCCCCCceeHHHHHHHHHHCCChhHHHHHhhcCCCC--CcccHHHHHHHHHhcCC
Q 007519 75 SWTAMICGL--ADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIK--NVISWNAMIAGYVECCM 150 (600)
Q Consensus 75 ~~~~l~~~~--~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~l~~~~~~~~~ 150 (600)
.|..+++++ ...+++++|.+.+-.-.-+ ..--..++.++...|+.+.|+.+++....+ +......++.. ..++.
T Consensus 78 ~~~~~~~g~W~LD~~~~~~A~~~L~~ps~~-~~~~~~Il~~L~~~~~~~lAL~y~~~~~p~l~s~~~~~~~~~~-La~~~ 155 (226)
T PF13934_consen 78 KYIKFIQGFWLLDHGDFEEALELLSHPSLI-PWFPDKILQALLRRGDPKLALRYLRAVGPPLSSPEALTLYFVA-LANGL 155 (226)
T ss_pred HHHHHHHHHHHhChHhHHHHHHHhCCCCCC-cccHHHHHHHHHHCCChhHHHHHHHhcCCCCCCHHHHHHHHHH-HHcCC
Confidence 344444544 3456666776666332111 112234666667777777777777665441 22222222223 45566
Q ss_pred HhHHHHHHHhcccCC-chhHHHHHHHHH
Q 007519 151 MGEAIVLFEEMEERN-VVTWTSMISGYC 177 (600)
Q Consensus 151 ~~~A~~~~~~~~~~~-~~~~~~l~~~~~ 177 (600)
+.+|..+.+...++. ...+..++..+.
T Consensus 156 v~EAf~~~R~~~~~~~~~l~e~l~~~~~ 183 (226)
T PF13934_consen 156 VTEAFSFQRSYPDELRRRLFEQLLEHCL 183 (226)
T ss_pred HHHHHHHHHhCchhhhHHHHHHHHHHHH
Confidence 666666666544321 234444444444
No 385
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=63.89 E-value=33 Score=30.28 Aligned_cols=30 Identities=7% Similarity=-0.083 Sum_probs=20.0
Q ss_pred CcHHHHhHHHHhhCCcHHHHHHHHHHhhcC
Q 007519 537 PAHVVLCNIYAASGRHVEEHKLRMDMGLKG 566 (600)
Q Consensus 537 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 566 (600)
.+...+|..+.+.|+.++|.+++..+...+
T Consensus 166 ~l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 166 TLLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 445566777777788888888666555433
No 386
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=63.73 E-value=48 Score=25.45 Aligned_cols=27 Identities=11% Similarity=0.155 Sum_probs=23.9
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHH
Q 007519 299 AWTAMISGLVQNELFVEATYLFMEMRA 325 (600)
Q Consensus 299 ~~~~li~~~~~~g~~~~a~~~~~~m~~ 325 (600)
-|..++..|...|.+++|++++.++..
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 578889999999999999999998877
No 387
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=62.30 E-value=46 Score=30.88 Aligned_cols=96 Identities=11% Similarity=0.186 Sum_probs=42.2
Q ss_pred cCCCCCChhhHHHHHHHHHhcCChhhHHHHhcccCC-CCc-----hhHHHHHHHHHhcCChHHHHHHHhhCCC----CCh
Q 007519 228 DNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPV-RDE-----ISWTSMIDGYLSVGQVSNAYYLFHNMPD----RDA 297 (600)
Q Consensus 228 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~-----~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~ 297 (600)
..|.+.+..+...++..-....+++.++.++-++.. ++. .+..+.+..+.+ -+.++++.++..-.. +|-
T Consensus 57 ~~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlllk-y~pq~~i~~l~npIqYGiF~dq 135 (418)
T KOG4570|consen 57 ERGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLLK-YDPQKAIYTLVNPIQYGIFPDQ 135 (418)
T ss_pred hcCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHHc-cChHHHHHHHhCcchhccccch
Confidence 335555555555555555555566666655544431 110 011111221111 233344443333222 455
Q ss_pred hhHHHHHHHHHhCCChhHHHHHHHHHH
Q 007519 298 VAWTAMISGLVQNELFVEATYLFMEMR 324 (600)
Q Consensus 298 ~~~~~li~~~~~~g~~~~a~~~~~~m~ 324 (600)
.+++.+|+.+.+.+++.+|.++...|.
T Consensus 136 f~~c~l~D~flk~~n~~~aa~vvt~~~ 162 (418)
T KOG4570|consen 136 FTFCLLMDSFLKKENYKDAASVVTEVM 162 (418)
T ss_pred hhHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 555555555555555555555554443
No 388
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=62.21 E-value=57 Score=26.56 Aligned_cols=76 Identities=13% Similarity=0.226 Sum_probs=49.0
Q ss_pred HHHHHHHHhcCChHHHHHHHhcCC---------CCChhhHHHHHHHHHhcCC-hHHHHHHHHHHHHcCCCCChhHHHHHH
Q 007519 371 NCLISMYAKCGVIDNAYNIFSNMV---------SRDLVSWNSMVMGFSHHGL-ANETLKVFESMLESGTHPNSVTFLGIL 440 (600)
Q Consensus 371 ~~l~~~~~~~~~~~~A~~~~~~~~---------~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~m~~~~~~p~~~~~~~l~ 440 (600)
++++......+++.....+++.+. ..+...|.+++.+.....- --.+..+|.-|++.+.+++...|..++
T Consensus 43 N~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li 122 (145)
T PF13762_consen 43 NCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLI 122 (145)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 444444444455555544444442 2345678888888866555 345677788888777888888888888
Q ss_pred HHhccc
Q 007519 441 SACSHA 446 (600)
Q Consensus 441 ~~~~~~ 446 (600)
.++.+.
T Consensus 123 ~~~l~g 128 (145)
T PF13762_consen 123 KAALRG 128 (145)
T ss_pred HHHHcC
Confidence 877665
No 389
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=61.58 E-value=31 Score=25.03 Aligned_cols=38 Identities=18% Similarity=0.224 Sum_probs=20.6
Q ss_pred cCCChhHHHHHhhhcCCCChhhHHHHHHHHHhcCChHHH
Q 007519 54 QNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEA 92 (600)
Q Consensus 54 ~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 92 (600)
..|+.+.|.+++..+. ..+..|..+++++...|...-|
T Consensus 48 ~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 48 NHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELA 85 (88)
T ss_pred ccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhh
Confidence 3455555666655555 4555555555555555544333
No 390
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=61.18 E-value=14 Score=33.85 Aligned_cols=61 Identities=18% Similarity=0.198 Sum_probs=34.8
Q ss_pred hhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCCCcHH
Q 007519 480 GRAGKIKEAEEFVLRL-PFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHV 540 (600)
Q Consensus 480 ~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 540 (600)
.+.|+.++|.++|+.. ...|+..-...-.+.+....+++-+|-++|-+++.+.|.|..+..
T Consensus 127 ~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALv 188 (472)
T KOG3824|consen 127 RKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALV 188 (472)
T ss_pred HhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHh
Confidence 4667777777777664 345544332222222222556666777777777777776555443
No 391
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=60.16 E-value=1.7e+02 Score=28.45 Aligned_cols=57 Identities=16% Similarity=0.129 Sum_probs=34.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhCCC------CChhhHHHHHHHHHhCCChhHHHHHHHHHHH
Q 007519 269 WTSMIDGYLSVGQVSNAYYLFHNMPD------RDAVAWTAMISGLVQNELFVEATYLFMEMRA 325 (600)
Q Consensus 269 ~~~l~~~~~~~~~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 325 (600)
+.-+.+.|..+|+++.|++.|.+..+ .-+..|-.+|..-.-.|+|..+.....+..+
T Consensus 153 ~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s 215 (466)
T KOG0686|consen 153 LEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAES 215 (466)
T ss_pred HHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh
Confidence 44566667777777777777776544 1223455556655666777766666655544
No 392
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=60.07 E-value=81 Score=25.29 Aligned_cols=70 Identities=16% Similarity=0.060 Sum_probs=42.5
Q ss_pred CCCcchHHHHHHHHhhcCChHH---HHHHHHhCC--CCCCH-H-HHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCC
Q 007519 466 QPGPEHYVSMINLLGRAGKIKE---AEEFVLRLP--FEPDH-R-IWGALLGACGFCEGNAEIAEHAAKRLLELDPLNA 536 (600)
Q Consensus 466 ~p~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~--~~p~~-~-~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 536 (600)
.++..+--.+.+++.++.+.++ ...+++++. ..|+. . ....+.-++. +.++++.++++...+++.+|+|.
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~y-RlkeY~~s~~yvd~ll~~e~~n~ 105 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHY-RLKEYSKSLRYVDALLETEPNNR 105 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHH-HHhhHHHHHHHHHHHHhhCCCcH
Confidence 4556666667777777765544 345555543 23321 2 2233334455 78888888888888888888443
No 393
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=60.07 E-value=1.5e+02 Score=30.37 Aligned_cols=119 Identities=15% Similarity=0.194 Sum_probs=57.4
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCh------------hHHHHHHHHhcccCchHHHHHHHHHHHhhc--CCCC-------
Q 007519 409 SHHGLANETLKVFESMLESGTHPNS------------VTFLGILSACSHAGLVSRGWELFNAMFDVY--KIQP------- 467 (600)
Q Consensus 409 ~~~~~~~~a~~~~~~m~~~~~~p~~------------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~p------- 467 (600)
....-+++|...|.-.... ..|+. .+...+...+...|+.+.|..++++..=.+ .+.|
T Consensus 249 ~hs~sYeqaq~~F~~av~~-~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg 327 (665)
T KOG2422|consen 249 EHSNSYEQAQRDFYLAVIV-HDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSG 327 (665)
T ss_pred ecchHHHHHHHHHHHHHhh-cCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccc
Confidence 3445566777776665543 22322 233334455666777777777666654110 0111
Q ss_pred ----------CcchHHHH---HHHHhhcCChHHHHHHHHhCC-CCC--CHHHHHHHHHHHhhhhCCHHHHHHHHHHH
Q 007519 468 ----------GPEHYVSM---INLLGRAGKIKEAEEFVLRLP-FEP--DHRIWGALLGACGFCEGNAEIAEHAAKRL 528 (600)
Q Consensus 468 ----------~~~~~~~l---~~~~~~~g~~~~A~~~~~~~~-~~p--~~~~~~~l~~~~~~~~g~~~~a~~~~~~~ 528 (600)
+...|.+| +..+.+.|-+..|.++.+-+- +.| |+.....++..|+.+..+++--+++++..
T Consensus 328 ~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~ 404 (665)
T KOG2422|consen 328 NCRLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEP 404 (665)
T ss_pred cccCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 11112222 233345566666665555442 333 34444555555544555555555555544
No 394
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=59.72 E-value=17 Score=31.59 Aligned_cols=36 Identities=25% Similarity=0.234 Sum_probs=23.5
Q ss_pred CCCCHHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCC
Q 007519 497 FEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDP 533 (600)
Q Consensus 497 ~~p~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p 533 (600)
..|++.++..++.++. ..|+.++|.+..+++..+.|
T Consensus 140 ~~P~~~~~~~~a~~l~-~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 140 RRPDPNVYQRYALALA-LLGDPEEARQWLARARRLYP 175 (193)
T ss_pred hCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCC
Confidence 4566666666666666 66666666666666666666
No 395
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=59.10 E-value=2.1e+02 Score=28.96 Aligned_cols=48 Identities=8% Similarity=-0.076 Sum_probs=25.2
Q ss_pred chHHHHHHHHHHHhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhC
Q 007519 448 LVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRL 495 (600)
Q Consensus 448 ~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 495 (600)
+.+...++...+.+..|..--...+.-+-..|....++++|++++..+
T Consensus 184 D~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~i 231 (711)
T COG1747 184 DKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENENWTEAIRILKHI 231 (711)
T ss_pred cHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccCHHHHHHHHHHH
Confidence 444445555555544444333444444555566666666666666544
No 396
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=58.88 E-value=1.2e+02 Score=27.05 Aligned_cols=38 Identities=16% Similarity=0.243 Sum_probs=23.6
Q ss_pred CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh
Q 007519 395 SRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNS 433 (600)
Q Consensus 395 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 433 (600)
.|.+.....++..+. .+++++|.+++.++-+.|+.|..
T Consensus 236 ~PhP~~v~~ml~~~~-~~~~~~A~~il~~lw~lgysp~D 273 (333)
T KOG0991|consen 236 EPHPLLVKKMLQACL-KRNIDEALKILAELWKLGYSPED 273 (333)
T ss_pred CCChHHHHHHHHHHH-hccHHHHHHHHHHHHHcCCCHHH
Confidence 455555555555443 34577777777777777776654
No 397
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=58.56 E-value=2.5e+02 Score=29.79 Aligned_cols=22 Identities=27% Similarity=0.392 Sum_probs=16.3
Q ss_pred HhhcCChHHHHHHHHhCCCCCC
Q 007519 479 LGRAGKIKEAEEFVLRLPFEPD 500 (600)
Q Consensus 479 ~~~~g~~~~A~~~~~~~~~~p~ 500 (600)
+...|++++|++.++++.+-|.
T Consensus 515 ~~~~g~~~~AL~~i~~L~liP~ 536 (613)
T PF04097_consen 515 LYHAGQYEQALDIIEKLDLIPL 536 (613)
T ss_dssp HHHTT-HHHHHHHHHHTT-S-S
T ss_pred HHHcCCHHHHHHHHHhCCCCCC
Confidence 4688999999999999986663
No 398
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=58.44 E-value=29 Score=30.12 Aligned_cols=33 Identities=24% Similarity=0.391 Sum_probs=21.1
Q ss_pred CCCCCcchHHHHHHHHhhcCChHHHHHHHHhCC
Q 007519 464 KIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLP 496 (600)
Q Consensus 464 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 496 (600)
...|++.+|..++.++...|+.++|.+..+++.
T Consensus 139 ~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~ 171 (193)
T PF11846_consen 139 RRRPDPNVYQRYALALALLGDPEEARQWLARAR 171 (193)
T ss_pred HhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 345666666666666666666666666666653
No 399
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=58.33 E-value=81 Score=24.04 Aligned_cols=51 Identities=16% Similarity=0.165 Sum_probs=25.0
Q ss_pred HHHhcCChHHHHHHHhhCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCC
Q 007519 275 GYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHG 327 (600)
Q Consensus 275 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 327 (600)
.+.+.|++++|+..=.....||...|.+|. -.+.|-.+++...+.++...|
T Consensus 49 sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~--a~klGL~~~~e~~l~rla~~g 99 (116)
T PF09477_consen 49 SLMNRGDYQEALLLPQCHCYPDLEPWAALC--AWKLGLASALESRLTRLASSG 99 (116)
T ss_dssp HHHHTT-HHHHHHHHTTS--GGGHHHHHHH--HHHCT-HHHHHHHHHHHCT-S
T ss_pred HHHhhHHHHHHHHhcccCCCccHHHHHHHH--HHhhccHHHHHHHHHHHHhCC
Confidence 445556666663333333345666655443 345666666666666665554
No 400
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=58.24 E-value=45 Score=32.61 Aligned_cols=22 Identities=18% Similarity=0.217 Sum_probs=11.3
Q ss_pred HHHHHHHHCCChhHHHHHhhcC
Q 007519 109 SMVVGLIRNGELNEARKVFNSM 130 (600)
Q Consensus 109 ~l~~~~~~~~~~~~a~~~~~~~ 130 (600)
.|++..+-.||+..|+++++.+
T Consensus 127 gLlRvh~LLGDY~~Alk~l~~i 148 (404)
T PF10255_consen 127 GLLRVHCLLGDYYQALKVLENI 148 (404)
T ss_pred HHHHHHHhccCHHHHHHHhhcc
Confidence 3444455555555555555444
No 401
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=57.43 E-value=1.3e+02 Score=26.04 Aligned_cols=55 Identities=9% Similarity=-0.008 Sum_probs=24.4
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccCchHHHHHHHHHHHhh
Q 007519 406 MGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDV 462 (600)
Q Consensus 406 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 462 (600)
......|.+++|+.+++.....+..+ .....-.+.+...|+-++|+.-|++....
T Consensus 134 rvq~q~~k~D~AL~~L~t~~~~~w~~--~~~elrGDill~kg~k~~Ar~ay~kAl~~ 188 (207)
T COG2976 134 RVQLQQKKADAALKTLDTIKEESWAA--IVAELRGDILLAKGDKQEARAAYEKALES 188 (207)
T ss_pred HHHHHhhhHHHHHHHHhccccccHHH--HHHHHhhhHHHHcCchHHHHHHHHHHHHc
Confidence 34445555555555555443322111 11111224455555555555555555543
No 402
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=56.64 E-value=1.9e+02 Score=28.89 Aligned_cols=36 Identities=22% Similarity=0.293 Sum_probs=16.7
Q ss_pred HHHhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHh
Q 007519 477 NLLGRAGKIKEAEEFVLRLP--FEPDHRIWGALLGACG 512 (600)
Q Consensus 477 ~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~ 512 (600)
-.|...|+.-.|.+.|.+.. +..++..|..+..+|.
T Consensus 343 ~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCi 380 (696)
T KOG2471|consen 343 LLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCI 380 (696)
T ss_pred HHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 33444555555555544442 3344444444444443
No 403
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=56.56 E-value=1.6e+02 Score=27.03 Aligned_cols=51 Identities=14% Similarity=0.049 Sum_probs=35.5
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHCCCCCChhH-------HHHHHHHHhcccchhhhHH
Q 007519 303 MISGLVQNELFVEATYLFMEMRAHGVPPLNAT-------FSVLFGAAGATANIDLGRQ 353 (600)
Q Consensus 303 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~-------~~~l~~~~~~~~~~~~a~~ 353 (600)
+.+...+.+++++|+..|.+....|+..|..+ ...+...|.+.|+.....+
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~ 66 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGD 66 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHH
Confidence 44556778889999999999999888776554 4455566666666544333
No 404
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=56.55 E-value=36 Score=25.21 Aligned_cols=49 Identities=18% Similarity=0.111 Sum_probs=31.6
Q ss_pred hhCCHHHHHHHHHHHHhhCCCC---------CCcHHHHhHHHHhhCCcHHHHHHHHHH
Q 007519 514 CEGNAEIAEHAAKRLLELDPLN---------APAHVVLCNIYAASGRHVEEHKLRMDM 562 (600)
Q Consensus 514 ~~g~~~~a~~~~~~~~~~~p~~---------~~~~~~l~~~~~~~g~~~~A~~~~~~~ 562 (600)
+.||+..|.+.+.+.++..... ......++..+...|++++|...+++.
T Consensus 10 ~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eA 67 (94)
T PF12862_consen 10 RSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEA 67 (94)
T ss_pred HcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 5788888877777777632211 123345666677788888888855444
No 405
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=56.54 E-value=2.6e+02 Score=29.27 Aligned_cols=114 Identities=17% Similarity=0.099 Sum_probs=50.9
Q ss_pred chHHHHHHHHHHHhhcCCCCCcchHHHHHHHHhhc---CChHHHHHHHHhCCCCCCHHHHHHHHHHHhh---hhCCHHHH
Q 007519 448 LVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRA---GKIKEAEEFVLRLPFEPDHRIWGALLGACGF---CEGNAEIA 521 (600)
Q Consensus 448 ~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~---~~g~~~~a 521 (600)
+.+.|..++.+.... + .|+...+ ++..+... .+...|.++|...-..-....+-.+...+.. ...+.+.|
T Consensus 308 d~~~A~~~~~~aA~~-g-~~~a~~~--lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A 383 (552)
T KOG1550|consen 308 DYEKALKLYTKAAEL-G-NPDAQYL--LGVLYETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELA 383 (552)
T ss_pred cHHHHHHHHHHHHhc-C-CchHHHH--HHHHHHcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHH
Confidence 445566666665542 2 2232222 23332222 2455666666665422233332222222220 12256667
Q ss_pred HHHHHHHHhhCCCCCCcHHHHhHHHHhh-CCcHHHHHHHHHHhhcCC
Q 007519 522 EHAAKRLLELDPLNAPAHVVLCNIYAAS-GRHVEEHKLRMDMGLKGV 567 (600)
Q Consensus 522 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~ 567 (600)
...++++-+.++ +.+...++..+.-. ++++.+.-.+..+.+.|.
T Consensus 384 ~~~~k~aA~~g~--~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~~g~ 428 (552)
T KOG1550|consen 384 FAYYKKAAEKGN--PSAAYLLGAFYEYGVGRYDTALALYLYLAELGY 428 (552)
T ss_pred HHHHHHHHHccC--hhhHHHHHHHHHHccccccHHHHHHHHHHHhhh
Confidence 777776666552 33333333332211 566666555555554444
No 406
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=55.77 E-value=2.6e+02 Score=29.18 Aligned_cols=79 Identities=14% Similarity=-0.015 Sum_probs=39.1
Q ss_pred ChHHHHHHHHhCCCCCCHHHHHHHHHHHhh---hhCCHHHHHHHHHHHHhhCCCCCCcHHHHhHHHHhh-C--CcHHHHH
Q 007519 484 KIKEAEEFVLRLPFEPDHRIWGALLGACGF---CEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAAS-G--RHVEEHK 557 (600)
Q Consensus 484 ~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~---~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g--~~~~A~~ 557 (600)
+.+.+...+.+....-+......+...+.. ...+.+.|...|.++.... +.....++..+..- | .+..|.+
T Consensus 454 ~~~~~~~~~~~a~~~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~~~~a~~ 530 (552)
T KOG1550|consen 454 TLERAFSLYSRAAAQGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFNLGYMHEHGEGIKVLHLAKR 530 (552)
T ss_pred chhHHHHHHHHHHhccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhhhhhHHhcCcCcchhHHHHH
Confidence 344455555554433334444444433321 1235667777776666555 55555566555431 1 1466666
Q ss_pred HHHHHhhc
Q 007519 558 LRMDMGLK 565 (600)
Q Consensus 558 ~~~~~~~~ 565 (600)
+++...+.
T Consensus 531 ~~~~~~~~ 538 (552)
T KOG1550|consen 531 YYDQASEE 538 (552)
T ss_pred HHHHHHhc
Confidence 66655543
No 407
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=55.56 E-value=1.6e+02 Score=26.58 Aligned_cols=57 Identities=9% Similarity=-0.045 Sum_probs=35.5
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHh-cccchhhhHHHHHHH
Q 007519 302 AMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAG-ATANIDLGRQIHCVL 358 (600)
Q Consensus 302 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~-~~~~~~~a~~~~~~~ 358 (600)
.++....+.|+++++...++++...+...+..--+.+-.+|- ..|....+.+++...
T Consensus 6 ~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~ 63 (236)
T PF00244_consen 6 YLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSI 63 (236)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhH
Confidence 356667788999999999999998877666665555555552 234444555555533
No 408
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=55.37 E-value=1.2e+02 Score=28.50 Aligned_cols=18 Identities=28% Similarity=0.309 Sum_probs=13.2
Q ss_pred HHHHHHHHHHhhCCCCCC
Q 007519 520 IAEHAAKRLLELDPLNAP 537 (600)
Q Consensus 520 ~a~~~~~~~~~~~p~~~~ 537 (600)
.|++...++.+.+|.-|.
T Consensus 380 ~AvEAihRAvEFNPHVPk 397 (556)
T KOG3807|consen 380 NAVEAIHRAVEFNPHVPK 397 (556)
T ss_pred HHHHHHHHHhhcCCCCcH
Confidence 577888888888884333
No 409
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=54.34 E-value=49 Score=30.39 Aligned_cols=55 Identities=25% Similarity=0.241 Sum_probs=41.0
Q ss_pred HHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCCCcHHHHhHHHHhhCCcHHHHHHH
Q 007519 504 WGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLR 559 (600)
Q Consensus 504 ~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 559 (600)
++.....|. ..|.+.+|+++-++++.++|-+...+..|...+...|+--.|.+-+
T Consensus 282 lgkva~~yl-e~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khy 336 (361)
T COG3947 282 LGKVARAYL-EAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHY 336 (361)
T ss_pred HHHHHHHHH-HcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHH
Confidence 334445566 7888888888888888888888888888888888888855555533
No 410
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=53.82 E-value=40 Score=32.97 Aligned_cols=92 Identities=13% Similarity=0.146 Sum_probs=63.7
Q ss_pred CCcchHHHHHHHHHcCCChhHHHHHhhhcCCCC----------------hhhHHHHHHHHHhcCChHHHHHHhhcCCC--
Q 007519 40 RNVVSYNAMLSGFLQNGRLSEARRLFEEMPERN----------------VVSWTAMICGLADAGRVCEARKLFEEMPE-- 101 (600)
Q Consensus 40 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~----------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-- 101 (600)
.+...-..++..+....++.+-++..+....|+ -.+.-.|++..+-.||+..|+++++.+.-
T Consensus 73 W~~~~VLnvL~sLv~kS~I~e~l~~~~~~~~~~~~~~~~g~~~l~~~LGYFSligLlRvh~LLGDY~~Alk~l~~idl~~ 152 (404)
T PF10255_consen 73 WNVYSVLNVLYSLVDKSQINEQLEAEKRGEDPDEVAGEYGSSPLYKMLGYFSLIGLLRVHCLLGDYYQALKVLENIDLNK 152 (404)
T ss_pred ccHHHHHHHHHHHHHHHhHHHHHHHhhccCCchhhhcccccccHHHHhhHHHHHHHHHHHHhccCHHHHHHHhhccCccc
Confidence 444444555666667777777666666644322 12455667777888999999999887642
Q ss_pred ---------CCceeHHHHHHHHHHCCChhHHHHHhhcCC
Q 007519 102 ---------RNVVSWNSMVVGLIRNGELNEARKVFNSMP 131 (600)
Q Consensus 102 ---------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 131 (600)
-.+.++.-+.-+|...+++.+|.+.|..+.
T Consensus 153 ~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 153 KGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred chhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 134467778888899999999999998764
No 411
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=52.94 E-value=1e+02 Score=23.54 Aligned_cols=54 Identities=20% Similarity=0.218 Sum_probs=31.0
Q ss_pred HHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 007519 373 LISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESG 428 (600)
Q Consensus 373 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 428 (600)
-+..+.+.|++++|+..=.....||...|-+|- -.+.|-.+++...+.++...|
T Consensus 46 r~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~--a~klGL~~~~e~~l~rla~~g 99 (116)
T PF09477_consen 46 RLSSLMNRGDYQEALLLPQCHCYPDLEPWAALC--AWKLGLASALESRLTRLASSG 99 (116)
T ss_dssp HHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHH--HHHCT-HHHHHHHHHHHCT-S
T ss_pred HHHHHHhhHHHHHHHHhcccCCCccHHHHHHHH--HHhhccHHHHHHHHHHHHhCC
Confidence 344566778888885544445567777775543 346677777777777666554
No 412
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=52.81 E-value=24 Score=37.51 Aligned_cols=28 Identities=18% Similarity=0.058 Sum_probs=14.7
Q ss_pred cchHHHHHHHHhhcCChHHHHHHHHhCC
Q 007519 469 PEHYVSMINLLGRAGKIKEAEEFVLRLP 496 (600)
Q Consensus 469 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 496 (600)
..+|..|+..-.+.|+.+-|+..|++..
T Consensus 672 ~d~w~rLge~Al~qgn~~IaEm~yQ~~k 699 (1202)
T KOG0292|consen 672 KDVWERLGEEALRQGNHQIAEMCYQRTK 699 (1202)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHhh
Confidence 3455555555555555555555555443
No 413
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=51.82 E-value=2.4e+02 Score=27.44 Aligned_cols=114 Identities=13% Similarity=0.072 Sum_probs=77.8
Q ss_pred HHHHHHHhhcCChHHHHHHHHhCCCCC-----CHHHHH---HHHHHHhhhhCCHHHHHHHHHHHHhh---CCCC----CC
Q 007519 473 VSMINLLGRAGKIKEAEEFVLRLPFEP-----DHRIWG---ALLGACGFCEGNAEIAEHAAKRLLEL---DPLN----AP 537 (600)
Q Consensus 473 ~~l~~~~~~~g~~~~A~~~~~~~~~~p-----~~~~~~---~l~~~~~~~~g~~~~a~~~~~~~~~~---~p~~----~~ 537 (600)
..|...+...|+.++|..++.+.+... -..-.. .-++.|. ..+|+-.|--+-+++... +|+- -.
T Consensus 135 k~L~~ike~~Gdi~~Aa~il~el~VETygsm~~~ekV~fiLEQmrKOG-~~~D~vra~i~skKI~~K~F~~~~~~~lKlk 213 (439)
T KOG1498|consen 135 KMLAKIKEEQGDIAEAADILCELQVETYGSMEKSEKVAFILEQMRLCL-LRLDYVRAQIISKKINKKFFEKPDVQELKLK 213 (439)
T ss_pred HHHHHHHHHcCCHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHhhHHhcCCccHHHHHHH
Confidence 357778889999999999998886221 111111 2234566 788998888777777652 2311 24
Q ss_pred cHHHHhHHHHhhCCcHHHHHHHHHHhhcCCccCCCcceEEECCeEEEEee
Q 007519 538 AHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWLMRNGGIQMFLS 587 (600)
Q Consensus 538 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 587 (600)
.|..++....+.+.+=++.+.++.+-..|..++....|+.+-..+--|..
T Consensus 214 yY~lmI~l~lh~~~Yl~v~~~Yraiy~t~~vk~d~~kw~~vL~~iv~f~~ 263 (439)
T KOG1498|consen 214 YYELMIRLGLHDRAYLNVCRSYRAIYDTGNVKEDPEKWIEVLRSIVSFCV 263 (439)
T ss_pred HHHHHHHhcccccchhhHHHHHHHHhcccccccChhhhhhhhhhheeEEe
Confidence 57777888888899999999998888888777766667766444444433
No 414
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=51.54 E-value=2.5e+02 Score=28.76 Aligned_cols=23 Identities=39% Similarity=0.644 Sum_probs=17.6
Q ss_pred HHHHHHHhcCChHHHHHHHhcCC
Q 007519 372 CLISMYAKCGVIDNAYNIFSNMV 394 (600)
Q Consensus 372 ~l~~~~~~~~~~~~A~~~~~~~~ 394 (600)
.++.-|.+.+++++|..++..|.
T Consensus 413 eL~~~yl~~~qi~eAi~lL~smn 435 (545)
T PF11768_consen 413 ELISQYLRCDQIEEAINLLLSMN 435 (545)
T ss_pred HHHHHHHhcCCHHHHHHHHHhCC
Confidence 56667788888888888887775
No 415
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=50.82 E-value=2.5e+02 Score=27.38 Aligned_cols=122 Identities=8% Similarity=0.022 Sum_probs=66.2
Q ss_pred CCChhhHHHHHHHHHhcCChhhHHHHhcccCCCCchhHHHHHHHHH---hcCChHHHHHHHhhCCCCChhhHHH---HHH
Q 007519 232 NCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYL---SVGQVSNAYYLFHNMPDRDAVAWTA---MIS 305 (600)
Q Consensus 232 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~A~~~~~~~~~~~~~~~~~---li~ 305 (600)
+--..++..+-..+...|+.+.|.+++++..---..++......+. ..|.. . ++--...|...|-+ .|.
T Consensus 37 PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~---r--L~~~~~eNR~fflal~r~i~ 111 (360)
T PF04910_consen 37 PYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNC---R--LDYRRPENRQFFLALFRYIQ 111 (360)
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCcc---c--cCCccccchHHHHHHHHHHH
Confidence 4456667777777777777777777766654100000111000000 00000 0 00000023333433 455
Q ss_pred HHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHh-cccchhhhHHHHHHH
Q 007519 306 GLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAG-ATANIDLGRQIHCVL 358 (600)
Q Consensus 306 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~-~~~~~~~a~~~~~~~ 358 (600)
.+.+.|.+..|+++.+-+......-|+.....+|..++ +.+..+-..++.+..
T Consensus 112 ~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~ 165 (360)
T PF04910_consen 112 SLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESP 165 (360)
T ss_pred HHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhH
Confidence 67889999999999999988765546667777777554 556666666666543
No 416
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=50.71 E-value=1.3e+02 Score=23.96 Aligned_cols=43 Identities=9% Similarity=0.190 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHcCCCCCh-hHHHHHHHHhcccCchHHHHHHHHH
Q 007519 416 ETLKVFESMLESGTHPNS-VTFLGILSACSHAGLVSRGWELFNA 458 (600)
Q Consensus 416 ~a~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~ 458 (600)
.+.++|..|...|+--.. ..|......+...|++++|.++|+.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 555666666655544333 3334444445555555555555543
No 417
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=50.50 E-value=2.1e+02 Score=26.60 Aligned_cols=17 Identities=18% Similarity=-0.031 Sum_probs=8.9
Q ss_pred CHHHHHHHHHHHHhhCC
Q 007519 517 NAEIAEHAAKRLLELDP 533 (600)
Q Consensus 517 ~~~~a~~~~~~~~~~~p 533 (600)
|.++|...|+++-+...
T Consensus 206 d~~~A~~wy~~Aa~~g~ 222 (292)
T COG0790 206 DLKKAFRWYKKAAEQGD 222 (292)
T ss_pred CHHHHHHHHHHHHHCCC
Confidence 45555555555555443
No 418
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=50.44 E-value=29 Score=30.54 Aligned_cols=60 Identities=25% Similarity=0.330 Sum_probs=35.9
Q ss_pred HHhhcCChHHHHHHHHhCC-CCCC-HHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCCCc
Q 007519 478 LLGRAGKIKEAEEFVLRLP-FEPD-HRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPA 538 (600)
Q Consensus 478 ~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 538 (600)
...+.|+.+.|.+++.+.. ..|+ ...|--+...-. +.|+.+.|.+.|++.++++|++...
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~e-kag~~daAa~a~~~~L~ldp~D~~g 65 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTE-KAGEFDAAAAAYEEVLELDPEDHGG 65 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhh-hcccHHHHHHHHHHHHcCCcccccc
Confidence 3456667777777766653 3333 344554444444 6777777777777777777755443
No 419
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=49.55 E-value=86 Score=23.19 Aligned_cols=17 Identities=35% Similarity=0.520 Sum_probs=7.6
Q ss_pred HHhcCChhhHHHHhccc
Q 007519 245 YIRFGRLEEAQNLFDTV 261 (600)
Q Consensus 245 ~~~~~~~~~a~~~~~~~ 261 (600)
....|+.++|...+++.
T Consensus 51 ~~~~G~~~~A~~~l~eA 67 (94)
T PF12862_consen 51 HRRFGHYEEALQALEEA 67 (94)
T ss_pred HHHhCCHHHHHHHHHHH
Confidence 33444444444444433
No 420
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=49.30 E-value=33 Score=31.73 Aligned_cols=44 Identities=20% Similarity=0.151 Sum_probs=34.4
Q ss_pred CChh-hHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHH
Q 007519 295 RDAV-AWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVL 338 (600)
Q Consensus 295 ~~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 338 (600)
+|+. .|+..|....+.||.++|+.++++..+.|+.--..+|...
T Consensus 254 ~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~ 298 (303)
T PRK10564 254 NDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISS 298 (303)
T ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHH
Confidence 3443 5678999999999999999999999999877655565443
No 421
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=49.25 E-value=70 Score=25.98 Aligned_cols=65 Identities=18% Similarity=0.091 Sum_probs=43.4
Q ss_pred hHHHHHHHHhCCCCCCHHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCCCcHHHHhHHHHhhCCcH
Q 007519 485 IKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHV 553 (600)
Q Consensus 485 ~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 553 (600)
-+.|.++.+-|. ............. ..|++.-|.++...++..+|+|...-...+.+|...|.-.
T Consensus 57 ~~~A~~~v~l~G---G~d~vl~~A~~~~-~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~ 121 (141)
T PF14863_consen 57 EEEAKRYVELAG---GADKVLERAQAAL-AAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQS 121 (141)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHH-HCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHcC---CHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhc
Confidence 355666666664 2233333444455 7899999999999999999988888888888887766433
No 422
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=48.52 E-value=1.1e+02 Score=31.37 Aligned_cols=130 Identities=17% Similarity=0.011 Sum_probs=85.3
Q ss_pred CCChhHHHHHHHHhcc--cCchHHHHHHHHHHHhhcCCCCCcchHHHHHHHHh-hcCChHHHHHHHHhCC-CCCC--HHH
Q 007519 430 HPNSVTFLGILSACSH--AGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLG-RAGKIKEAEEFVLRLP-FEPD--HRI 503 (600)
Q Consensus 430 ~p~~~~~~~l~~~~~~--~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~-~~p~--~~~ 503 (600)
-|+..+...++.-... ...-+.+..++..|.+ ...|-=.++| ++..|. -.|+...|...+...- ..|. ...
T Consensus 568 ~~~~~~~k~~~~r~~~~~i~e~e~~~~~~~~~~~--~~~p~w~~ln-~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~ 644 (886)
T KOG4507|consen 568 MPDDHARKILLSRINNYTIPEEEIGSFLFHAINK--PNAPIWLILN-EAGLYWRAVGNSTFAIACLQRALNLAPLQQDVP 644 (886)
T ss_pred CchHHHHHHHHHHHhcccCcHHHHHHHHHHHhcC--CCCCeEEEee-cccceeeecCCcHHHHHHHHHHhccChhhhccc
Confidence 3555555555433321 1233445555555543 3334322222 334444 4689999999887753 4442 223
Q ss_pred HHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCCCcHHHHhHHHHhhCCcHHHHH-HHHHHh
Q 007519 504 WGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHK-LRMDMG 563 (600)
Q Consensus 504 ~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~-~~~~~~ 563 (600)
...+..... +.|-...|-.++.+.+.+....|.++..++.++....+++.|++ +.+.|.
T Consensus 645 ~v~la~~~~-~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~ 704 (886)
T KOG4507|consen 645 LVNLANLLI-HYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAFRQALK 704 (886)
T ss_pred HHHHHHHHH-HhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHHHHHHh
Confidence 455666666 88888899999999999888789999999999999999999999 555554
No 423
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=48.29 E-value=48 Score=24.02 Aligned_cols=58 Identities=12% Similarity=0.168 Sum_probs=31.2
Q ss_pred HHHhcccCCchhHHHHHHHHHhcCChhHHHHHHccCCCCCcchHHHHHHHHHhcCChh
Q 007519 157 LFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHK 214 (600)
Q Consensus 157 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 214 (600)
++..+.+.++.+....-..-+...+.+++.++++.++.++..+|..+..++...|...
T Consensus 21 v~~~L~~~~Vlt~~~~e~I~~~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~~ 78 (84)
T cd08326 21 LWDHLLSRGVFTPDMIEEIQAAGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQTD 78 (84)
T ss_pred HHHHHHhcCCCCHHHHHHHHcCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCchH
Confidence 3333334444444444444444455666666666666666666666666665555433
No 424
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=48.27 E-value=4e+02 Score=29.08 Aligned_cols=68 Identities=12% Similarity=0.085 Sum_probs=36.8
Q ss_pred HHHHhcCChhhHHHHhcccCCCCchhHHHHHHHHHhcCChHHHHHHHhhCCCCChhhHHHHHHHHHhCCChh
Q 007519 243 NGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFV 314 (600)
Q Consensus 243 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 314 (600)
+.|...|++++|.++-+.-...-..++..-.+.|...+++..|-++|.++. ..+..+.--+....+.+
T Consensus 366 k~yLd~g~y~kAL~~ar~~p~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t~----~~FEEVaLKFl~~~~~~ 433 (911)
T KOG2034|consen 366 KTYLDKGEFDKALEIARTRPDALETVLLKQADFLFQDKEYLRAAEIYAETL----SSFEEVALKFLEINQER 433 (911)
T ss_pred HHHHhcchHHHHHHhccCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhh----hhHHHHHHHHHhcCCHH
Confidence 456667777777766554311111233333455666667777777776652 34444555555555555
No 425
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=47.86 E-value=2.8e+02 Score=27.14 Aligned_cols=57 Identities=18% Similarity=0.158 Sum_probs=31.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhcCC------CCChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 007519 369 LENCLISMYAKCGVIDNAYNIFSNMV------SRDLVSWNSMVMGFSHHGLANETLKVFESML 425 (600)
Q Consensus 369 ~~~~l~~~~~~~~~~~~A~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 425 (600)
.+.-+.+.|..+|+++.|.+.|.+.. +.-+..|-.+|..-.-.|++........+..
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~ 214 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAE 214 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHH
Confidence 34456666777777777777776644 1123344444444445555555555444443
No 426
>PRK13342 recombination factor protein RarA; Reviewed
Probab=47.81 E-value=3e+02 Score=27.46 Aligned_cols=45 Identities=22% Similarity=0.174 Sum_probs=30.1
Q ss_pred HHHHHHHHHh---CCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhc
Q 007519 300 WTAMISGLVQ---NELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGA 344 (600)
Q Consensus 300 ~~~li~~~~~---~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 344 (600)
+..++.++.+ .++.+.|+.++..|.+.|..|....-..++.++..
T Consensus 230 ~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~ed 277 (413)
T PRK13342 230 HYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASED 277 (413)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 3444555444 57899999999999999888765544444444433
No 427
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=47.40 E-value=47 Score=29.32 Aligned_cols=57 Identities=16% Similarity=0.307 Sum_probs=45.5
Q ss_pred HhcccCchHHHHHHHHHHHhhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHhC-CCCCCH
Q 007519 442 ACSHAGLVSRGWELFNAMFDVYKIQP-GPEHYVSMINLLGRAGKIKEAEEFVLRL-PFEPDH 501 (600)
Q Consensus 442 ~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~ 501 (600)
.....++.+.+.+++.++. ++.| ....|-.+...-.++|+++.|.+.+++. ...|+.
T Consensus 4 ~~~~~~D~~aaaely~qal---~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 4 MLAESGDAEAAAELYNQAL---ELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred hhcccCChHHHHHHHHHHh---hcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 3457788999999999887 4567 5788889999999999999999998875 455543
No 428
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=46.14 E-value=3.2e+02 Score=30.87 Aligned_cols=147 Identities=14% Similarity=0.082 Sum_probs=78.5
Q ss_pred HHhcCChhHHHHHHHHHHhhh--------------------cCCCCCC-----hhhHHHHHHHHHhcCChhhHHHHhccc
Q 007519 207 FAWNGFHKESLLLFIEMKGIC--------------------DNGNNCN-----VQSCNSMINGYIRFGRLEEAQNLFDTV 261 (600)
Q Consensus 207 ~~~~~~~~~a~~~~~~~~~~~--------------------~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~ 261 (600)
|...|...+|+..|.+....+ ..|..|+ ..-|..+++.+-+.+-.+.+.++-...
T Consensus 930 yl~tge~~kAl~cF~~a~Sg~ge~~aL~~lv~~~~p~~~sv~dG~t~s~e~t~lhYYlkv~rlle~hn~~E~vcQlA~~A 1009 (1480)
T KOG4521|consen 930 YLGTGEPVKALNCFQSALSGFGEGNALRKLVYFLLPKRFSVADGKTPSEELTALHYYLKVVRLLEEHNHAEEVCQLAVKA 1009 (1480)
T ss_pred eecCCchHHHHHHHHHHhhccccHHHHHHHHHHhcCCCCchhcCCCCCchHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 556778888888887775530 1122222 223555666666666666655554333
Q ss_pred C-------CCCchhHHHHHHHHHhcCChHHHHHHHhhCCC--CChhhHHHHHHHHHhCCChh------------HHHH-H
Q 007519 262 P-------VRDEISWTSMIDGYLSVGQVSNAYYLFHNMPD--RDAVAWTAMISGLVQNELFV------------EATY-L 319 (600)
Q Consensus 262 ~-------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~------------~a~~-~ 319 (600)
. +.-..+++.+.+.....|.+-+|...+-.... .-......++..++..|+++ +... +
T Consensus 1010 Ie~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~npdserrrdcLRqlvivLfecg~l~~L~~fpfigl~~eve~~l 1089 (1480)
T KOG4521|consen 1010 IENLPDDNPSVALISTTVFNHHLDLGHWFQAYKAILRNPDSERRRDCLRQLVIVLFECGELEALATFPFIGLEQEVEDFL 1089 (1480)
T ss_pred HHhCCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhccchHHHhhCCccchHHHHHHHH
Confidence 2 12233566777777777877777766654433 11234555666666666553 3333 3
Q ss_pred HHHHHHCCCCCChhHHHHHHHHHhcccchhhhHH
Q 007519 320 FMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQ 353 (600)
Q Consensus 320 ~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~ 353 (600)
++..-+....-....|..|..-+...+++.+|-.
T Consensus 1090 ~esaaRs~~~mk~nyYelLYAfh~~RhN~Rkaat 1123 (1480)
T KOG4521|consen 1090 RESAARSSPSMKKNYYELLYAFHVARHNFRKAAT 1123 (1480)
T ss_pred HHHHhhcCccccccHHHHHHHHHHhhcchhHHHH
Confidence 3333332222223345555555566777766544
No 429
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=45.98 E-value=2.2e+02 Score=25.71 Aligned_cols=162 Identities=12% Similarity=0.096 Sum_probs=81.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHh-cccCchHHHHHHHHHHHhhcCCCCCcchHHHHHHHHhhc
Q 007519 404 MVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSAC-SHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRA 482 (600)
Q Consensus 404 l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~-~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 482 (600)
++...-+.|+++++...++++...+...+..--+.+..+| ...|....+++++........-..+ .....++.-|.+.
T Consensus 7 ~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~~~-~~~~~~i~~yk~k 85 (236)
T PF00244_consen 7 LAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEENKGN-EKQVKLIKDYKKK 85 (236)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhcccch-hHHHHHHHHHHHH
Confidence 4566677888888888888888876666665555555555 2335556666666665543211111 2233333333211
Q ss_pred ------CChHHHHHHHHhCC----CCCCHHHHHHHHHH--Hh----hhhC-----CHHHHHHHHHHHHh-----hCCCCC
Q 007519 483 ------GKIKEAEEFVLRLP----FEPDHRIWGALLGA--CG----FCEG-----NAEIAEHAAKRLLE-----LDPLNA 536 (600)
Q Consensus 483 ------g~~~~A~~~~~~~~----~~p~~~~~~~l~~~--~~----~~~g-----~~~~a~~~~~~~~~-----~~p~~~ 536 (600)
.--.+..++++... ..+...+|-.-+.+ +. ...| -.+.|...|+++.+ +.|.+|
T Consensus 86 ie~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L~~~~p 165 (236)
T PF00244_consen 86 IEDELIDICNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKALEAYEEALEIAKKELPPTHP 165 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHHSCTTSH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhccccccccccccchhhHHHHHHHHHhhhhHHHHHhcccCCCCc
Confidence 11234555555532 12223332222111 11 0112 23677888888776 566555
Q ss_pred CcHHHHh----HHHHhhCCcHHHHHHHHHHhhcC
Q 007519 537 PAHVVLC----NIYAASGRHVEEHKLRMDMGLKG 566 (600)
Q Consensus 537 ~~~~~l~----~~~~~~g~~~~A~~~~~~~~~~~ 566 (600)
.-..... ..|--.|+.++|.++-+..-+..
T Consensus 166 ~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a 199 (236)
T PF00244_consen 166 LRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEA 199 (236)
T ss_dssp HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence 3332221 22345799999999766554433
No 430
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=45.15 E-value=3.4e+02 Score=27.41 Aligned_cols=240 Identities=9% Similarity=0.008 Sum_probs=131.6
Q ss_pred hHHHHHHHHHHHCCCCCChhHHHHHHHHHhccc------chhhhHHHHHHHhhhc-C-CCchhHHHHHHHHHHhcCChH-
Q 007519 314 VEATYLFMEMRAHGVPPLNATFSVLFGAAGATA------NIDLGRQIHCVLMKTE-S-ESDLILENCLISMYAKCGVID- 384 (600)
Q Consensus 314 ~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~------~~~~a~~~~~~~~~~~-~-~~~~~~~~~l~~~~~~~~~~~- 384 (600)
+....+|++..+. -|+...+...|..|...- .+.....+++...+.+ . +.....|..+.-.+.......
T Consensus 299 s~~~~v~ee~v~~--l~t~sm~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~ 376 (568)
T KOG2396|consen 299 SRCCAVYEEAVKT--LPTESMWECYITFCLERFTFLRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEARE 376 (568)
T ss_pred HHHHHHHHHHHHH--hhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchHhH
Confidence 4455777776653 566666666666654322 3344445555443332 2 224555666666666555443
Q ss_pred HHHHHHhcCCCCChhhHHHHHHHHHhcC-ChHH-HHHHHHHHHHcCCCCChhHHHHHHHHhcccCc-hHHH--HHHHHHH
Q 007519 385 NAYNIFSNMVSRDLVSWNSMVMGFSHHG-LANE-TLKVFESMLESGTHPNSVTFLGILSACSHAGL-VSRG--WELFNAM 459 (600)
Q Consensus 385 ~A~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~-a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~-~~~a--~~~~~~~ 459 (600)
-|..+..+....+...|-.-+....+.. +++- -.+++......-..+....|+... .|+ .+.. ..++..+
T Consensus 377 ~a~~l~~e~f~~s~k~~~~kl~~~~~s~sD~q~~f~~l~n~~r~~~~s~~~~~w~s~~-----~~dsl~~~~~~~Ii~a~ 451 (568)
T KOG2396|consen 377 VAVKLTTELFRDSGKMWQLKLQVLIESKSDFQMLFEELFNHLRKQVCSELLISWASAS-----EGDSLQEDTLDLIISAL 451 (568)
T ss_pred HHHHhhHHHhcchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcchhHHHHHHHh-----hccchhHHHHHHHHHHH
Confidence 3344443555667777766665555332 2221 122233333322223333343333 122 1111 1222223
Q ss_pred HhhcCCCCCc-chHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHH--hhhhCCHHHHHHHHHHHHhhCCC
Q 007519 460 FDVYKIQPGP-EHYVSMINLLGRAGKIKEAEEFVLRLP-FEP-DHRIWGALLGAC--GFCEGNAEIAEHAAKRLLELDPL 534 (600)
Q Consensus 460 ~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~--~~~~g~~~~a~~~~~~~~~~~p~ 534 (600)
.. ...|+. ..-+.+.+.+.+.|-..+|...+..+. .+| ....+..++..- . ..-+...+..+|+.+..-...
T Consensus 452 ~s--~~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lpp~sl~l~r~miq~e~~~-~sc~l~~~r~~yd~a~~~fg~ 528 (568)
T KOG2396|consen 452 LS--VIGADSVTLKSKYLDWAYESGGYKKARKVYKSLQELPPFSLDLFRKMIQFEKEQ-ESCNLANIREYYDRALREFGA 528 (568)
T ss_pred HH--hcCCceeehhHHHHHHHHHhcchHHHHHHHHHHHhCCCccHHHHHHHHHHHhhH-hhcCchHHHHHHHHHHHHhCC
Confidence 22 234543 344567888889999999999998875 333 445555555431 2 234577888899988885556
Q ss_pred CCCcHHHHhHHHHhhCCcHHHHH-HHHHHh
Q 007519 535 NAPAHVVLCNIYAASGRHVEEHK-LRMDMG 563 (600)
Q Consensus 535 ~~~~~~~l~~~~~~~g~~~~A~~-~~~~~~ 563 (600)
++..|......-...|..+.+-. +++.|+
T Consensus 529 d~~lw~~y~~~e~~~g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 529 DSDLWMDYMKEELPLGRPENCGQIYWRAMK 558 (568)
T ss_pred ChHHHHHHHHhhccCCCcccccHHHHHHHH
Confidence 88888877777778888888877 555554
No 431
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=44.12 E-value=5.1e+02 Score=29.10 Aligned_cols=321 Identities=11% Similarity=0.023 Sum_probs=157.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhhhcCCCCCChhhHHH---HHHHHHhcC---ChhhHHHHhcccCCC--CchhHHH
Q 007519 200 WTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNS---MINGYIRFG---RLEEAQNLFDTVPVR--DEISWTS 271 (600)
Q Consensus 200 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~---l~~~~~~~~---~~~~a~~~~~~~~~~--~~~~~~~ 271 (600)
+.++=+++...+.+++|+..++.+...++..-+--...+.. ++.-....| .+++|+.-|+.+... -+--|--
T Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 557 (932)
T PRK13184 478 CLAVPDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHGGVGAPLEYLG 557 (932)
T ss_pred cccCcHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCCchHHHh
Confidence 44555788889999999999999987532111111222222 222222334 366777777777632 2333333
Q ss_pred HHHHHHhcCChHHHHHHHhhCCC-----C------C--------------hhhHHHHHHHHHh---CCChhHHHHHHHHH
Q 007519 272 MIDGYLSVGQVSNAYYLFHNMPD-----R------D--------------AVAWTAMISGLVQ---NELFVEATYLFMEM 323 (600)
Q Consensus 272 l~~~~~~~~~~~~A~~~~~~~~~-----~------~--------------~~~~~~li~~~~~---~g~~~~a~~~~~~m 323 (600)
-.-.|-+.|++++-++.+.-..+ | + ..+|.-++-+... .-...+-..+|+.+
T Consensus 558 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 637 (932)
T PRK13184 558 KALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYKHRREALVFMLLALWIAPEKISSREEEKFLEIL 637 (932)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 34456677887777666544322 1 1 1122222222211 11122334455544
Q ss_pred HHCCCCCChh--------HHHHH-HH--HHhcccchhhhHHHHHHHhhhcCCCchhHHHHHHHHHHhcCChHHHHHHHhc
Q 007519 324 RAHGVPPLNA--------TFSVL-FG--AAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSN 392 (600)
Q Consensus 324 ~~~g~~p~~~--------~~~~l-~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 392 (600)
..+ .+|... ++..- +. ...-.|..----.+++.+... ++-....-+.-..+..|.++-+.+....
T Consensus 638 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 713 (932)
T PRK13184 638 YHK-QQATLFCQLDKTPLQFRSSKMELFLSFWSGFTPFLPELFQRAWDL---RDYRALADIFYVACDLGNWEFFSQFSDI 713 (932)
T ss_pred Hhh-ccCCceeeccCchhhhhhhhHHHHHHHHhcCchhhHHHHHHHhhc---ccHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 433 222222 11110 10 001122222233333333322 1223333334445778888777665544
Q ss_pred CC--------CCC--------hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChh--HHHHHHHHhcccCchHHHHH
Q 007519 393 MV--------SRD--------LVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSV--TFLGILSACSHAGLVSRGWE 454 (600)
Q Consensus 393 ~~--------~~~--------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~--~~~~l~~~~~~~g~~~~a~~ 454 (600)
+. +.+ ...|-.-+.++.....++++.+.+.. ++|... .+..++.-+.-.++.+....
T Consensus 714 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 (932)
T PRK13184 714 LAEVSDEITFTESIVEQKVEELMFFLKGLEALSNKEDYEKAFKHLDN-----TDPTLILYAFDLFAIQALLDEEGESIIQ 788 (932)
T ss_pred HHHHhhhccchHHHHhhhHHHHHHHHHHHHHHHccccHHHHHhhhhh-----CCHHHHHHHHHHHHHHHHHhccchHHHH
Confidence 43 111 12233334555555666666654433 344433 23333333334445555555
Q ss_pred HHHHHHhhcCCCCC--cchHHHHHHHHhhcCChHHHHHHHHhCC---CCCCHHHHHHHHHHHhhhhCCHHHHHHHHHHHH
Q 007519 455 LFNAMFDVYKIQPG--PEHYVSMINLLGRAGKIKEAEEFVLRLP---FEPDHRIWGALLGACGFCEGNAEIAEHAAKRLL 529 (600)
Q Consensus 455 ~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~p~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~ 529 (600)
+.+.+.+. ..... ......-+.+|.-..++++|-+++...+ ...+......+-+++....++.+.|..++....
T Consensus 789 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 867 (932)
T PRK13184 789 LLQLIYDY-VSEEERHDHLLVYEIQAHLWNRDLKKAYKLLNRYPLDLLLDEYSEAFVLYGCYLALTEDREAAKAHFSGCR 867 (932)
T ss_pred HHHHHHhc-cCChhhhhhhhHHHHHHHHHhccHHHHHHHHHhCChhhhccccchHHHHHHHHHHhcCchhHHHHHHhhcc
Confidence 55544331 22111 3344566788889999999999998876 223333333344443336788888888888777
Q ss_pred h
Q 007519 530 E 530 (600)
Q Consensus 530 ~ 530 (600)
+
T Consensus 868 ~ 868 (932)
T PRK13184 868 E 868 (932)
T ss_pred c
Confidence 5
No 432
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=44.05 E-value=29 Score=27.56 Aligned_cols=33 Identities=27% Similarity=0.528 Sum_probs=25.0
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHH
Q 007519 408 FSHHGLANETLKVFESMLESGTHPNSVTFLGILSA 442 (600)
Q Consensus 408 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 442 (600)
....|.-.+|..+|++|++.|-+||. |+.|+..
T Consensus 105 lR~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~ 137 (140)
T PF11663_consen 105 LRAYGSKTDAYAVFRKMLERGNPPDD--WDALLKE 137 (140)
T ss_pred hhhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHH
Confidence 34456677899999999999999986 5555544
No 433
>PRK13342 recombination factor protein RarA; Reviewed
Probab=43.55 E-value=3.5e+02 Score=27.00 Aligned_cols=43 Identities=16% Similarity=0.223 Sum_probs=27.9
Q ss_pred HHHHHHHHHh---cCChHHHHHHHHHHHHcCCCCChhHHHHHHHHh
Q 007519 401 WNSMVMGFSH---HGLANETLKVFESMLESGTHPNSVTFLGILSAC 443 (600)
Q Consensus 401 ~~~l~~~~~~---~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 443 (600)
+.-++.++.+ ..+.+.|+.++..|.+.|..|....-..+..++
T Consensus 230 ~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~ 275 (413)
T PRK13342 230 HYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIAS 275 (413)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 3344455444 478888999999999888777755444444443
No 434
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=43.21 E-value=5.5e+02 Score=29.22 Aligned_cols=58 Identities=12% Similarity=0.066 Sum_probs=30.8
Q ss_pred HHHHHHHhcccCchHHHHHHHHHHHhhcCCCCC----cchHHHHHHHHhhcCChHHHHHHHHhC
Q 007519 436 FLGILSACSHAGLVSRGWELFNAMFDVYKIQPG----PEHYVSMINLLGRAGKIKEAEEFVLRL 495 (600)
Q Consensus 436 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~ 495 (600)
|...++.+.+.+-.+.+.++--.+++. +.++ +.+++++.+.....|.+-+|.+.+-+.
T Consensus 986 Ylkv~rlle~hn~~E~vcQlA~~AIe~--l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~n 1047 (1480)
T KOG4521|consen 986 YLKVVRLLEEHNHAEEVCQLAVKAIEN--LPDDNPSVALISTTVFNHHLDLGHWFQAYKAILRN 1047 (1480)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHh--CCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHcC
Confidence 334444455555555555555555442 2221 445556666666666666666665443
No 435
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=43.14 E-value=1.3e+02 Score=23.82 Aligned_cols=37 Identities=16% Similarity=0.169 Sum_probs=31.1
Q ss_pred CCCCCHHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCC
Q 007519 496 PFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDP 533 (600)
Q Consensus 496 ~~~p~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p 533 (600)
.+-|++.+....+.+|. +-+|+..|+++++-....-+
T Consensus 79 DlVP~pkvIEaaLRA~R-RvNDfa~aVRilE~iK~K~g 115 (149)
T KOG4077|consen 79 DLVPSPKVIEAALRACR-RVNDFATAVRILEAIKDKCG 115 (149)
T ss_pred ccCCChHHHHHHHHHHH-HhccHHHHHHHHHHHHHhcc
Confidence 36788888999999999 89999999999988776555
No 436
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=42.90 E-value=3.7e+02 Score=27.18 Aligned_cols=105 Identities=10% Similarity=0.112 Sum_probs=66.6
Q ss_pred HHHhcCCCCChhhH-HHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhc--ccCchHHHHHHHHHHHhhcC
Q 007519 388 NIFSNMVSRDLVSW-NSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACS--HAGLVSRGWELFNAMFDVYK 464 (600)
Q Consensus 388 ~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~--~~g~~~~a~~~~~~~~~~~~ 464 (600)
..+..+..++..++ +.++..+.+.|-+.+|...+..+... .+|+...|..++..-. ..-++.-+..+++.+...+|
T Consensus 449 ~a~~s~~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~l-pp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg 527 (568)
T KOG2396|consen 449 SALLSVIGADSVTLKSKYLDWAYESGGYKKARKVYKSLQEL-PPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFG 527 (568)
T ss_pred HHHHHhcCCceeehhHHHHHHHHHhcchHHHHHHHHHHHhC-CCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhC
Confidence 33444445555443 44666677777788888888887764 3555566666654321 11236777888888887767
Q ss_pred CCCCcchHHHHHHHHhhcCChHHHHHHHHhC
Q 007519 465 IQPGPEHYVSMINLLGRAGKIKEAEEFVLRL 495 (600)
Q Consensus 465 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 495 (600)
.|+..|...+..=...|..+.+-.++.++
T Consensus 528 --~d~~lw~~y~~~e~~~g~~en~~~~~~ra 556 (568)
T KOG2396|consen 528 --ADSDLWMDYMKEELPLGRPENCGQIYWRA 556 (568)
T ss_pred --CChHHHHHHHHhhccCCCcccccHHHHHH
Confidence 56667776666666777777776666553
No 437
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=42.77 E-value=4.9e+02 Score=28.51 Aligned_cols=219 Identities=11% Similarity=0.007 Sum_probs=107.0
Q ss_pred HHHhcCChHHHHHHHhhCCC----CCh-------hhHHHHHH-HHHhCCChhHHHHHHHHHHHC----CCCCChhHHHHH
Q 007519 275 GYLSVGQVSNAYYLFHNMPD----RDA-------VAWTAMIS-GLVQNELFVEATYLFMEMRAH----GVPPLNATFSVL 338 (600)
Q Consensus 275 ~~~~~~~~~~A~~~~~~~~~----~~~-------~~~~~li~-~~~~~g~~~~a~~~~~~m~~~----g~~p~~~~~~~l 338 (600)
......++++|..++.++.. ++. ..|+.+-. .....|+++.|.++-+..... -..+....+..+
T Consensus 424 ~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~ 503 (894)
T COG2909 424 LLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVL 503 (894)
T ss_pred HHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhh
Confidence 34456778888777765432 221 13443332 234567888888887776653 112233344445
Q ss_pred HHHHhcccchhhhHHHHHHHhhhcCCCchhHHHHHH-----HHHHhcCChH--HHHHHHhcCC-----C-----CChhhH
Q 007519 339 FGAAGATANIDLGRQIHCVLMKTESESDLILENCLI-----SMYAKCGVID--NAYNIFSNMV-----S-----RDLVSW 401 (600)
Q Consensus 339 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-----~~~~~~~~~~--~A~~~~~~~~-----~-----~~~~~~ 401 (600)
..+..-.|+.++|..+.+...+.....+...+.... ..+..+|... +.+..|.... . .-..+.
T Consensus 504 ~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r 583 (894)
T COG2909 504 GEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIR 583 (894)
T ss_pred hHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHH
Confidence 556667788888888888666654444444443322 2234455322 2222222221 1 112233
Q ss_pred HHHHHHHHhc-CChHHHHHHHHHHHHcCCCCChhHHH--HHHHHhcccCchHHHHHHHHHHHhhcCCCCCcch-H---HH
Q 007519 402 NSMVMGFSHH-GLANETLKVFESMLESGTHPNSVTFL--GILSACSHAGLVSRGWELFNAMFDVYKIQPGPEH-Y---VS 474 (600)
Q Consensus 402 ~~l~~~~~~~-~~~~~a~~~~~~m~~~~~~p~~~~~~--~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~-~---~~ 474 (600)
..+..++.+. +...++..-+.-.......|-...+. .++......|+.++|...+.++... ...++..+ | ..
T Consensus 584 ~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l-~~~~~~~~~~~a~~~ 662 (894)
T COG2909 584 AQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERL-LLNGQYHVDYLAAAY 662 (894)
T ss_pred HHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH-hcCCCCCchHHHHHH
Confidence 3344444441 11122222222222221122222222 4556677788999988888877654 22332111 1 11
Q ss_pred HHH--HHhhcCChHHHHHHHHh
Q 007519 475 MIN--LLGRAGKIKEAEEFVLR 494 (600)
Q Consensus 475 l~~--~~~~~g~~~~A~~~~~~ 494 (600)
.+. .-...|+.+.|.....+
T Consensus 663 ~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 663 KVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HhhHHHhcccCCHHHHHHHHHh
Confidence 222 22467777777776655
No 438
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=42.76 E-value=63 Score=24.81 Aligned_cols=26 Identities=12% Similarity=0.211 Sum_probs=15.9
Q ss_pred hHHHHHHHHHhcCChHHHHHHhhcCC
Q 007519 75 SWTAMICGLADAGRVCEARKLFEEMP 100 (600)
Q Consensus 75 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 100 (600)
-|..|+..|...|.+++|.+++.+..
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~ 66 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLA 66 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHh
Confidence 45566666666666666666665544
No 439
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=42.42 E-value=2.8e+02 Score=25.53 Aligned_cols=30 Identities=13% Similarity=-0.040 Sum_probs=19.6
Q ss_pred CCchhHHHHHHHHHhcCChHHHHHHHhhCC
Q 007519 264 RDEISWTSMIDGYLSVGQVSNAYYLFHNMP 293 (600)
Q Consensus 264 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 293 (600)
-++.....+...|.+.|++.+|...|-.-.
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~ 117 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFLLGT 117 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHHTS-
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHHhcC
Confidence 356677778888888888888877765443
No 440
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=41.98 E-value=1.8e+02 Score=23.14 Aligned_cols=43 Identities=21% Similarity=0.313 Sum_probs=34.6
Q ss_pred HHHHHHHHHHhhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHh
Q 007519 451 RGWELFNAMFDVYKIQP-GPEHYVSMINLLGRAGKIKEAEEFVLR 494 (600)
Q Consensus 451 ~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 494 (600)
.+.++|+.|... ++.- -+..|...+..+...|++++|.++++.
T Consensus 81 ~~~~if~~l~~~-~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSK-GIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHH-TTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHc-CccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 788889888886 6655 477788889999999999999998864
No 441
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=41.79 E-value=2.3e+02 Score=28.17 Aligned_cols=41 Identities=27% Similarity=0.288 Sum_probs=27.3
Q ss_pred HHhCCCCCCHH--HHHHHHHHHhhhhCCHHHHHHHHHHHHhhCC
Q 007519 492 VLRLPFEPDHR--IWGALLGACGFCEGNAEIAEHAAKRLLELDP 533 (600)
Q Consensus 492 ~~~~~~~p~~~--~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p 533 (600)
|....+.|... ++...+..+. +.+++..|-.+.++++++.|
T Consensus 289 FThc~LQp~H~~LaLr~AM~~~~-K~KNf~tAa~FArRLLel~p 331 (422)
T PF06957_consen 289 FTHCKLQPSHLILALRSAMSQAF-KLKNFITAASFARRLLELNP 331 (422)
T ss_dssp HCCS---HHHHHHHHHHHHHHCC-CTTBHHHHHHHHHHHHCT--
T ss_pred HhcCCCcHHHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHHcCC
Confidence 33344555433 4566666677 99999999999999999998
No 442
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=41.38 E-value=73 Score=18.58 Aligned_cols=25 Identities=24% Similarity=0.028 Sum_probs=12.7
Q ss_pred HHHHhhhhCCHHHHHHH--HHHHHhhCC
Q 007519 508 LGACGFCEGNAEIAEHA--AKRLLELDP 533 (600)
Q Consensus 508 ~~~~~~~~g~~~~a~~~--~~~~~~~~p 533 (600)
...+. ..|++++|+.+ ++-+..++|
T Consensus 8 a~~~y-~~~ky~~A~~~~~y~~l~~ld~ 34 (36)
T PF07720_consen 8 AYNFY-QKGKYDEAIHFFQYAFLCALDK 34 (36)
T ss_dssp HHHHH-HTT-HHHHHHHHHHHHHHHHTT
T ss_pred HHHHH-HHhhHHHHHHHHHHHHHHHhcc
Confidence 33344 56666666666 335554544
No 443
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=41.32 E-value=90 Score=19.62 Aligned_cols=34 Identities=18% Similarity=0.264 Sum_probs=24.7
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHH
Q 007519 408 FSHHGLANETLKVFESMLESGTHPNSVTFLGILS 441 (600)
Q Consensus 408 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~ 441 (600)
..+.|-..++..++++|.+.|+.-+...+..++.
T Consensus 12 Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 12 AKRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 3456777788888888888888777777666554
No 444
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=41.17 E-value=31 Score=31.70 Aligned_cols=56 Identities=18% Similarity=0.371 Sum_probs=42.7
Q ss_pred cccCchHHHHHHHHHHHhhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHhCC-CCCCHH
Q 007519 444 SHAGLVSRGWELFNAMFDVYKIQP-GPEHYVSMINLLGRAGKIKEAEEFVLRLP-FEPDHR 502 (600)
Q Consensus 444 ~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~ 502 (600)
.+.|+.++|..+|+.+.. +.| ++.++.-++.......++-+|-+++-+.. ..|...
T Consensus 127 ~~~Gk~ekA~~lfeHAla---laP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~ns 184 (472)
T KOG3824|consen 127 RKDGKLEKAMTLFEHALA---LAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNS 184 (472)
T ss_pred HhccchHHHHHHHHHHHh---cCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCch
Confidence 478999999999999874 577 47777777777777788888888886654 666443
No 445
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=40.36 E-value=2.3e+02 Score=24.28 Aligned_cols=25 Identities=36% Similarity=0.533 Sum_probs=13.0
Q ss_pred HHhhhhCCHHHHHHHHHHHHhhCCCCC
Q 007519 510 ACGFCEGNAEIAEHAAKRLLELDPLNA 536 (600)
Q Consensus 510 ~~~~~~g~~~~a~~~~~~~~~~~p~~~ 536 (600)
.|. +.|.+++|.+++++..+ +|++.
T Consensus 120 VCm-~~g~Fk~A~eiLkr~~~-d~~~~ 144 (200)
T cd00280 120 VCM-ENGEFKKAEEVLKRLFS-DPESQ 144 (200)
T ss_pred HHH-hcCchHHHHHHHHHHhc-CCCch
Confidence 344 55555555555555555 44333
No 446
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=40.33 E-value=67 Score=18.23 Aligned_cols=26 Identities=12% Similarity=0.212 Sum_probs=17.9
Q ss_pred CHHHHHHHHHHHHhhCCCCCCcHHHHh
Q 007519 517 NAEIAEHAAKRLLELDPLNAPAHVVLC 543 (600)
Q Consensus 517 ~~~~a~~~~~~~~~~~p~~~~~~~~l~ 543 (600)
.++.|..+|++.+...| ++..+...+
T Consensus 2 E~dRAR~IyeR~v~~hp-~~k~WikyA 27 (32)
T PF02184_consen 2 EFDRARSIYERFVLVHP-EVKNWIKYA 27 (32)
T ss_pred hHHHHHHHHHHHHHhCC-CchHHHHHH
Confidence 45677778888777777 666665544
No 447
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=39.13 E-value=44 Score=22.48 Aligned_cols=21 Identities=10% Similarity=0.069 Sum_probs=8.7
Q ss_pred HHHhcccCchHHHHHHHHHHH
Q 007519 440 LSACSHAGLVSRGWELFNAMF 460 (600)
Q Consensus 440 ~~~~~~~g~~~~a~~~~~~~~ 460 (600)
+.++...|++++|.++++.+.
T Consensus 30 I~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 30 IYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHH
Confidence 344444444444444444433
No 448
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=39.01 E-value=1.7e+02 Score=23.90 Aligned_cols=62 Identities=6% Similarity=0.027 Sum_probs=33.2
Q ss_pred HHHHHHHCCCCCChhHHHHHHHHHhcccchhhhHHHHHHHhhhcCCCchhHHHHHHHHHHhcC
Q 007519 319 LFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCG 381 (600)
Q Consensus 319 ~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 381 (600)
+.+.+.+.|++++..-. .++..+...++.-.|..++..+.+.+...+..+.-.-++.+...|
T Consensus 8 ~~~~lk~~glr~T~qR~-~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 8 AIERLKEAGLRLTPQRL-AVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHHcCCCcCHHHH-HHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 33445556665554432 334444555555667777777776666655554444444444444
No 449
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=38.98 E-value=1e+02 Score=24.80 Aligned_cols=46 Identities=15% Similarity=0.135 Sum_probs=25.1
Q ss_pred chHHHHHHHHHHHhhcCCCC--CcchHHHHHHHHhhcCChHHHHHHHHhC
Q 007519 448 LVSRGWELFNAMFDVYKIQP--GPEHYVSMINLLGRAGKIKEAEEFVLRL 495 (600)
Q Consensus 448 ~~~~a~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 495 (600)
+..+.+.+++.+.+. -.| .......|.-++.+.|++++++++++.+
T Consensus 50 dv~~GI~iLe~l~~~--~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~l 97 (149)
T KOG3364|consen 50 DVQEGIVILEDLLKS--AHPERRRECLYYLAVGHYRLKEYSKSLRYVDAL 97 (149)
T ss_pred HHHHhHHHHHHHhhh--cCcccchhhhhhhHHHHHHHhhHHHHHHHHHHH
Confidence 445556666666541 123 2334444555666666666666666554
No 450
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=37.36 E-value=3.8e+02 Score=25.64 Aligned_cols=112 Identities=13% Similarity=0.058 Sum_probs=53.7
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHhhcCC-CCCceeHHHHHHHHHHCCChhHHHHHhhcCCCCCc------------cc
Q 007519 71 RNVVSWTAMICGLADAGRVCEARKLFEEMP-ERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNV------------IS 137 (600)
Q Consensus 71 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------------~~ 137 (600)
++...-..-+.++...|..+....+.+.+. .+|..+....+.++.+.++......+++.+.++.. ..
T Consensus 86 ~~~~vr~~a~~aLg~~~~~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~~a~~~l~~~l~~~~~~~a~~~~~~~~~~~ 165 (335)
T COG1413 86 EDPRVRDAAADALGELGDPEAVPPLVELLENDENEGVRAAAARALGKLGDERALDPLLEALQDEDSGSAAAALDAALLDV 165 (335)
T ss_pred CCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCchhhhHHHHHHhccchhhhhhhhccchHHHH
Confidence 343333333445555555555544444444 25555556666666666666655555555544321 12
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHhcccCCchhHHHHHHHHHhcCCh
Q 007519 138 WNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEV 182 (600)
Q Consensus 138 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 182 (600)
....+..+...|+...-..+.+....++..+....+.+..+.+..
T Consensus 166 r~~a~~~l~~~~~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~ 210 (335)
T COG1413 166 RAAAAEALGELGDPEAIPLLIELLEDEDADVRRAAASALGQLGSE 210 (335)
T ss_pred HHHHHHHHHHcCChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcc
Confidence 333344444444444444444433344444444444445444444
No 451
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=37.35 E-value=1.1e+02 Score=28.03 Aligned_cols=53 Identities=28% Similarity=0.107 Sum_probs=40.5
Q ss_pred HHHHHhhhhCCHHHHHHHHHHHHhhCCCCCCcHHHHhHHHHhhCCcHHHHHHHH
Q 007519 507 LLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRM 560 (600)
Q Consensus 507 l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 560 (600)
+-+.+. ..++++.|.+..++.+.++|+++.-+.--|.+|.+.|...-|.+-++
T Consensus 187 lk~~~~-~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~ 239 (269)
T COG2912 187 LKAALL-RELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLS 239 (269)
T ss_pred HHHHHH-HhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHH
Confidence 334455 77888888888888888888888777788888888888777777443
No 452
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=36.75 E-value=2.4e+02 Score=23.12 Aligned_cols=53 Identities=15% Similarity=0.137 Sum_probs=38.2
Q ss_pred CChhhHHHHHHHHHhCCC-hhHHHHHHHHHHHCCCCCChhHHHHHHHHHhcccc
Q 007519 295 RDAVAWTAMISGLVQNEL-FVEATYLFMEMRAHGVPPLNATFSVLFGAAGATAN 347 (600)
Q Consensus 295 ~~~~~~~~li~~~~~~g~-~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~ 347 (600)
.+...|.+++.+..+..- ---+..+|.-|.+.+.+++..-|..++.+|.+...
T Consensus 77 ~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~g~~ 130 (145)
T PF13762_consen 77 LDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALRGYF 130 (145)
T ss_pred cccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCC
Confidence 345677788887755555 34567788888887788888888888888766533
No 453
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=36.74 E-value=1.8e+02 Score=21.80 Aligned_cols=24 Identities=17% Similarity=-0.003 Sum_probs=12.6
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHh
Q 007519 471 HYVSMINLLGRAGKIKEAEEFVLR 494 (600)
Q Consensus 471 ~~~~l~~~~~~~g~~~~A~~~~~~ 494 (600)
....|.-.|.+.|+.+.|.+-|+.
T Consensus 74 ~HAhLGlLys~~G~~e~a~~eFet 97 (121)
T COG4259 74 YHAHLGLLYSNSGKDEQAVREFET 97 (121)
T ss_pred HHHHHHHHHhhcCChHHHHHHHHH
Confidence 334455555555555555555544
No 454
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=36.51 E-value=1.5e+02 Score=25.26 Aligned_cols=18 Identities=39% Similarity=0.523 Sum_probs=9.0
Q ss_pred HHhhcCChHHHHHHHHhC
Q 007519 478 LLGRAGKIKEAEEFVLRL 495 (600)
Q Consensus 478 ~~~~~g~~~~A~~~~~~~ 495 (600)
.|.+.|.+++|.+++++.
T Consensus 120 VCm~~g~Fk~A~eiLkr~ 137 (200)
T cd00280 120 VCMENGEFKKAEEVLKRL 137 (200)
T ss_pred HHHhcCchHHHHHHHHHH
Confidence 344555555555555444
No 455
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=36.14 E-value=1.2e+02 Score=19.61 Aligned_cols=36 Identities=11% Similarity=-0.010 Sum_probs=24.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhhhcCCCCCChhhHHHHHH
Q 007519 203 MIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMIN 243 (600)
Q Consensus 203 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~ 243 (600)
+.-++.+.|+++.|.+..+.+++. .|+..-...|-.
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~~-----eP~N~Qa~~L~~ 42 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLEI-----EPDNRQAQSLKE 42 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHH-----TTS-HHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhh-----CCCcHHHHHHHH
Confidence 455677888888888888888865 777655444433
No 456
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=35.81 E-value=2.4e+02 Score=25.00 Aligned_cols=65 Identities=18% Similarity=0.099 Sum_probs=40.7
Q ss_pred cchHHHHHHHHhhcCChHH-------HHHHHHhCC------C-CCCHHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCC
Q 007519 469 PEHYVSMINLLGRAGKIKE-------AEEFVLRLP------F-EPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDP 533 (600)
Q Consensus 469 ~~~~~~l~~~~~~~g~~~~-------A~~~~~~~~------~-~p~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p 533 (600)
...+..+++.|-..|+.+. |.+.|.+.- . .-+..+...+++.+..+.|+.++|.+.+.+++...-
T Consensus 118 A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~ 196 (214)
T PF09986_consen 118 AGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKK 196 (214)
T ss_pred HHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCC
Confidence 4455567777777777444 444443321 1 123445555666554489999999999999987543
No 457
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=35.73 E-value=59 Score=21.86 Aligned_cols=21 Identities=24% Similarity=0.172 Sum_probs=8.5
Q ss_pred HHHHHHhcCChhHHHHHHHHH
Q 007519 203 MIGGFAWNGFHKESLLLFIEM 223 (600)
Q Consensus 203 li~~~~~~~~~~~a~~~~~~~ 223 (600)
+|.++...|++++|.++++++
T Consensus 29 vI~gllqlg~~~~a~eYi~~~ 49 (62)
T PF14689_consen 29 VIYGLLQLGKYEEAKEYIKEL 49 (62)
T ss_dssp HHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHH
Confidence 344444444444444444443
No 458
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=35.33 E-value=2.2e+02 Score=30.95 Aligned_cols=161 Identities=11% Similarity=0.025 Sum_probs=89.9
Q ss_pred HHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccCchHH
Q 007519 372 CLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSR 451 (600)
Q Consensus 372 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~ 451 (600)
++|..+.+.|-++-|+.+.+.-.. -.......|+.+.|++.-.++ -+..+|..|...-...|+.+-
T Consensus 625 aiIaYLqKkgypeiAL~FVkD~~t--------RF~LaLe~gnle~ale~akkl------dd~d~w~rLge~Al~qgn~~I 690 (1202)
T KOG0292|consen 625 AIIAYLQKKGYPEIALHFVKDERT--------RFELALECGNLEVALEAAKKL------DDKDVWERLGEEALRQGNHQI 690 (1202)
T ss_pred HHHHHHHhcCCcceeeeeecCcch--------heeeehhcCCHHHHHHHHHhc------CcHHHHHHHHHHHHHhcchHH
Confidence 445555566666655544433221 112334567777776655443 245567777777777888888
Q ss_pred HHHHHHHHHhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHhhhhCCHHHHHHHHHHHHhh
Q 007519 452 GWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLEL 531 (600)
Q Consensus 452 a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~ 531 (600)
|...|++... |..|...|.-.|+.++-.++.+..+.+.|..+. +..++ -.|+.++-..+++..
T Consensus 691 aEm~yQ~~kn----------fekLsfLYliTgn~eKL~Km~~iae~r~D~~~~--~qnal--Yl~dv~ervkIl~n~--- 753 (1202)
T KOG0292|consen 691 AEMCYQRTKN----------FEKLSFLYLITGNLEKLSKMMKIAEIRNDATGQ--FQNAL--YLGDVKERVKILENG--- 753 (1202)
T ss_pred HHHHHHHhhh----------hhheeEEEEEeCCHHHHHHHHHHHHhhhhhHHH--HHHHH--HhccHHHHHHHHHhc---
Confidence 8877776642 444555677778877777776666544443321 11221 247777666555432
Q ss_pred CCCCCCcHHHHhHHHHhhCCcHHHHHHHHHHhhcCCc
Q 007519 532 DPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVR 568 (600)
Q Consensus 532 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 568 (600)
..-+.+|.. -...|.-++|.++.++....++.
T Consensus 754 -g~~~laylt----a~~~G~~~~ae~l~ee~~~~~~~ 785 (1202)
T KOG0292|consen 754 -GQLPLAYLT----AAAHGLEDQAEKLGEELEKQVPS 785 (1202)
T ss_pred -CcccHHHHH----HhhcCcHHHHHHHHHhhccccCC
Confidence 112222221 23457777777788877764443
No 459
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=35.32 E-value=4.4e+02 Score=25.86 Aligned_cols=24 Identities=8% Similarity=0.034 Sum_probs=11.6
Q ss_pred HHHHHHHHhhcCChHHHHHHHHhC
Q 007519 472 YVSMINLLGRAGKIKEAEEFVLRL 495 (600)
Q Consensus 472 ~~~l~~~~~~~g~~~~A~~~~~~~ 495 (600)
.|.|++.|...+.++.|.++..+.
T Consensus 212 iN~LLr~yL~n~lydqa~~lvsK~ 235 (493)
T KOG2581|consen 212 INLLLRNYLHNKLYDQADKLVSKS 235 (493)
T ss_pred HHHHHHHHhhhHHHHHHHHHhhcc
Confidence 344444444455555555555444
No 460
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=34.26 E-value=1.2e+02 Score=22.42 Aligned_cols=48 Identities=10% Similarity=0.203 Sum_probs=26.6
Q ss_pred CCchhHHHHHHHHHhcCChhHHHHHHccCCCCCcchHHHHHHHHHhcC
Q 007519 164 RNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNG 211 (600)
Q Consensus 164 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~ 211 (600)
.++.+-...-..-+...+.+++.++++.+++.++.+|..+..++...+
T Consensus 32 ~gvlt~~~~~~I~~~~t~~~k~~~Lld~L~~RG~~AF~~F~~aL~~~~ 79 (90)
T cd08332 32 KDILTDSMAESIMAKPTSFSQNVALLNLLPKRGPRAFSAFCEALRETS 79 (90)
T ss_pred cCCCCHHHHHHHHcCCCcHHHHHHHHHHHHHhChhHHHHHHHHHHhcC
Confidence 333333333333334445566666666666666666666666665444
No 461
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=34.19 E-value=4.8e+02 Score=27.98 Aligned_cols=44 Identities=9% Similarity=0.135 Sum_probs=27.4
Q ss_pred HHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 007519 375 SMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLES 427 (600)
Q Consensus 375 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 427 (600)
..+++.|.+++-.++|+- . ..+.+-.-.+++.+|++.-+.|.+.
T Consensus 352 ~LlgrKG~leklq~YWdV------~---~y~~asVLAnd~~kaiqAae~mfKL 395 (1226)
T KOG4279|consen 352 SLLGRKGALEKLQEYWDV------A---TYFEASVLANDYQKAIQAAEMMFKL 395 (1226)
T ss_pred HHhhccchHHHHHHHHhH------H---HhhhhhhhccCHHHHHHHHHHHhcc
Confidence 345667777766666542 1 2234445567888888888888764
No 462
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=33.90 E-value=4.3e+02 Score=25.23 Aligned_cols=116 Identities=18% Similarity=0.143 Sum_probs=77.6
Q ss_pred hHHHHHHHHHHHHcCCCCChhHHHHHHHHhc------ccCchHHHHHHHHHHHhhcCCCCCcchHHHHHHHHhhcCChHH
Q 007519 414 ANETLKVFESMLESGTHPNSVTFLGILSACS------HAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKE 487 (600)
Q Consensus 414 ~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~------~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 487 (600)
++++..++++....+ .|..+.....|.++- ..-++.....+|+.+.. +.|++.+-.+=.-+.....-.+.
T Consensus 272 I~eg~all~rA~~~~-~pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~---~apSPvV~LNRAVAla~~~Gp~a 347 (415)
T COG4941 272 IDEGLALLDRALASR-RPGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQ---AAPSPVVTLNRAVALAMREGPAA 347 (415)
T ss_pred HHHHHHHHHHHHHcC-CCChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHH---hCCCCeEeehHHHHHHHhhhHHh
Confidence 678888888888776 488887777776552 22367777788887764 46764443333334455555677
Q ss_pred HHHHHHhCCCCCC---HHHHHHHHH-HHhhhhCCHHHHHHHHHHHHhhCCC
Q 007519 488 AEEFVLRLPFEPD---HRIWGALLG-ACGFCEGNAEIAEHAAKRLLELDPL 534 (600)
Q Consensus 488 A~~~~~~~~~~p~---~~~~~~l~~-~~~~~~g~~~~a~~~~~~~~~~~p~ 534 (600)
++.+++.+...|. ...|...-. .+. +.|..++|...|++++.+.++
T Consensus 348 gLa~ve~L~~~~~L~gy~~~h~~RadlL~-rLgr~~eAr~aydrAi~La~~ 397 (415)
T COG4941 348 GLAMVEALLARPRLDGYHLYHAARADLLA-RLGRVEEARAAYDRAIALARN 397 (415)
T ss_pred HHHHHHHhhcccccccccccHHHHHHHHH-HhCChHHHHHHHHHHHHhcCC
Confidence 7777777764432 223344433 355 899999999999999998884
No 463
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=33.82 E-value=4.1e+02 Score=25.02 Aligned_cols=135 Identities=12% Similarity=0.160 Sum_probs=67.9
Q ss_pred hHHHHHHHHHHHHcCCCCChhHHHHHHHHhcc--cC----chHHHHHHHHHHHhhcCCCCC--cchHHHHHHHHhhcCCh
Q 007519 414 ANETLKVFESMLESGTHPNSVTFLGILSACSH--AG----LVSRGWELFNAMFDVYKIQPG--PEHYVSMINLLGRAGKI 485 (600)
Q Consensus 414 ~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~--~g----~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~ 485 (600)
+++.+.+++.|.+.|++-+..+|.+....... .. ...+|..+++.|++.+.+--+ ..++..|+. ...++.
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA--~~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLA--MTSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHh--cccccH
Confidence 34566788888888888888777653332222 22 356788899999887554333 333333322 244443
Q ss_pred H----HHHHHHHhCC---CCC-CH-HHHHHHHHHHhhhhCC--HHHHHHHHHHHHhhCCC-CCCcHHHHhHHHHhhCC
Q 007519 486 K----EAEEFVLRLP---FEP-DH-RIWGALLGACGFCEGN--AEIAEHAAKRLLELDPL-NAPAHVVLCNIYAASGR 551 (600)
Q Consensus 486 ~----~A~~~~~~~~---~~p-~~-~~~~~l~~~~~~~~g~--~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~ 551 (600)
+ .++.+++.+. +.. +. .....++..+- ...+ ..++..+++.+.+.+-. ....|..+|-...-.+.
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~-~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLall~~~ 232 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSE-GDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLLALLEDP 232 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhcc-ccchHHHHHHHHHHHHHHHcCCccccccccHHHHHHhcCCc
Confidence 3 3444444442 322 22 23333443332 1111 34666777766663321 22334444444333333
No 464
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=33.34 E-value=1e+02 Score=28.69 Aligned_cols=40 Identities=18% Similarity=0.287 Sum_probs=31.2
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHH
Q 007519 398 LVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFL 437 (600)
Q Consensus 398 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~ 437 (600)
..-|+..|..-.+.||+++|+.++++.+..|+.--..+|.
T Consensus 257 e~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFi 296 (303)
T PRK10564 257 ESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFI 296 (303)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHH
Confidence 3456788888899999999999999999888665555543
No 465
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=33.04 E-value=4.8e+02 Score=25.57 Aligned_cols=26 Identities=8% Similarity=-0.258 Sum_probs=15.3
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCC
Q 007519 407 GFSHHGLANETLKVFESMLESGTHPN 432 (600)
Q Consensus 407 ~~~~~~~~~~a~~~~~~m~~~~~~p~ 432 (600)
.+...+++..|.++|+++.....+|+
T Consensus 139 ~l~n~~dy~aA~~~~~~L~~r~l~~~ 164 (380)
T TIGR02710 139 RAINAFDYLFAHARLETLLRRLLSAV 164 (380)
T ss_pred HHHHhcChHHHHHHHHHHHhcccChh
Confidence 34556666666666666666544333
No 466
>KOG2758 consensus Translation initiation factor 3, subunit e (eIF-3e) [Translation, ribosomal structure and biogenesis]
Probab=32.32 E-value=4.4e+02 Score=24.91 Aligned_cols=78 Identities=21% Similarity=0.250 Sum_probs=53.1
Q ss_pred HHHHHHHHhhcCCCCC-cchHHHHHHHHhhcCChHHHHHHH---HhCCCCCCHHHHHHHHHHHh--hhhCCHHHHHHHHH
Q 007519 453 WELFNAMFDVYKIQPG-PEHYVSMINLLGRAGKIKEAEEFV---LRLPFEPDHRIWGALLGACG--FCEGNAEIAEHAAK 526 (600)
Q Consensus 453 ~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~---~~~~~~p~~~~~~~l~~~~~--~~~g~~~~a~~~~~ 526 (600)
...++.+.+.+++.|+ ..+...++.....+|++..|-.++ ..+...|+....+.+-+-++ .-..+|+.|.+-+-
T Consensus 112 ~~~l~~L~e~ynf~~e~i~~lykyakfqyeCGNY~gAs~yLY~~r~l~~~~d~n~lsalwGKlASEIL~qnWd~A~edL~ 191 (432)
T KOG2758|consen 112 VQNLQHLQEHYNFTPERIETLYKYAKFQYECGNYSGASDYLYFYRALVSDPDRNYLSALWGKLASEILTQNWDGALEDLT 191 (432)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 5677778888888886 667777888888999999988764 33444555433333332221 13578888888888
Q ss_pred HHHh
Q 007519 527 RLLE 530 (600)
Q Consensus 527 ~~~~ 530 (600)
++.+
T Consensus 192 rLre 195 (432)
T KOG2758|consen 192 RLRE 195 (432)
T ss_pred HHHH
Confidence 7776
No 467
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=31.97 E-value=1.2e+02 Score=21.98 Aligned_cols=54 Identities=19% Similarity=0.315 Sum_probs=26.8
Q ss_pred ccCCCCCcchHHHHHHHHHcCCChhHHHHHhhhcCCCChhhHHHHHHHHHhcCC
Q 007519 35 QLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGR 88 (600)
Q Consensus 35 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~ 88 (600)
..+.+.++.+-...-..-...-+.+.|..++..++...+.+|..+.+++...|.
T Consensus 23 ~~L~~~~Vlt~~~~e~I~~~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~ 76 (84)
T cd08326 23 DHLLSRGVFTPDMIEEIQAAGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQ 76 (84)
T ss_pred HHHHhcCCCCHHHHHHHHcCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCc
Confidence 333333444443333333344455555555555555555555555555555443
No 468
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=31.83 E-value=1.2e+02 Score=27.59 Aligned_cols=24 Identities=17% Similarity=0.110 Sum_probs=16.8
Q ss_pred HHHHHHHHhhcCChHHHHHHHHhC
Q 007519 472 YVSMINLLGRAGKIKEAEEFVLRL 495 (600)
Q Consensus 472 ~~~l~~~~~~~g~~~~A~~~~~~~ 495 (600)
...++..|.+.|++++|.++|+.+
T Consensus 181 ~~~~A~ey~~~g~~~~A~~~l~~~ 204 (247)
T PF11817_consen 181 SLEMAEEYFRLGDYDKALKLLEPA 204 (247)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHH
Confidence 335666777777777777777665
No 469
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=31.48 E-value=4.4e+02 Score=24.69 Aligned_cols=163 Identities=15% Similarity=0.173 Sum_probs=0.0
Q ss_pred ChhHHHHHhhcCCCCCcccHHHHHHHHHhcCCHhHHHH--HHHhcccCCchhHHHHHHHHHhcCChhHHHHHHccCCC--
Q 007519 119 ELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIV--LFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPR-- 194 (600)
Q Consensus 119 ~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~--~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-- 194 (600)
+++-+.-.+++++..+ .....+-....+....-++.+ +.+.+.+.....+..+-..-.-..+...+......+.+
T Consensus 12 ~FD~~~~~L~~l~~~~-~~~~~i~~~~ekLs~~ldvVe~~L~~~I~~~s~~f~~a~~~v~el~~~l~~a~~~~~~~R~~L 90 (291)
T PF10475_consen 12 DFDPVRYELEKLPEDE-LDLEDIEELQEKLSHYLDVVEKKLSREISEKSDSFFQAMSSVQELQDELEEALVICKNLRRNL 90 (291)
T ss_pred CCCchHHHHHhCCCcc-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred ----CCcch-HHHHHHHHHhcCChhHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHhcCChhhHHHHhcccC-------
Q 007519 195 ----KNVVS-WTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVP------- 262 (600)
Q Consensus 195 ----~~~~~-~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~------- 262 (600)
.+... -..++....+.++.....+.+..+. ....-...+..+...|++..|++++....
T Consensus 91 ~~~~~~~~~~~L~Il~~~rkr~~l~~ll~~L~~i~---------~v~~~~~~l~~ll~~~dy~~Al~li~~~~~~l~~l~ 161 (291)
T PF10475_consen 91 KSADENLTKSGLEILRLQRKRQNLKKLLEKLEQIK---------TVQQTQSRLQELLEEGDYPGALDLIEECQQLLEELK 161 (291)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcc
Q ss_pred --------------------------------CCCchhHHHHHHHHHhcCChHHHHHHHhh
Q 007519 263 --------------------------------VRDEISWTSMIDGYLSVGQVSNAYYLFHN 291 (600)
Q Consensus 263 --------------------------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 291 (600)
.-|+..|..+..+|.-.|+...+.+-+..
T Consensus 162 ~~~c~~~L~~~L~e~~~~i~~~ld~~l~~~~~~Fd~~~Y~~v~~AY~lLgk~~~~~dkl~~ 222 (291)
T PF10475_consen 162 GYSCVRHLSSQLQETLELIEEQLDSDLSKVCQDFDPDKYSKVQEAYQLLGKTQSAMDKLQM 222 (291)
T ss_pred cchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhHHHHHHHHH
No 470
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=31.42 E-value=1.1e+02 Score=30.45 Aligned_cols=48 Identities=8% Similarity=0.090 Sum_probs=19.9
Q ss_pred cCChHHHHHHHHHHHHcCCCCChhHHHHHH-HHhcccCchHHHHHHHHHHH
Q 007519 411 HGLANETLKVFESMLESGTHPNSVTFLGIL-SACSHAGLVSRGWELFNAMF 460 (600)
Q Consensus 411 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~-~~~~~~g~~~~a~~~~~~~~ 460 (600)
.+.++.|+.++.+..+ +.||...|-..- .++.+.+++..|..=+.++.
T Consensus 17 ~~~fd~avdlysKaI~--ldpnca~~~anRa~a~lK~e~~~~Al~Da~kai 65 (476)
T KOG0376|consen 17 DKVFDVAVDLYSKAIE--LDPNCAIYFANRALAHLKVESFGGALHDALKAI 65 (476)
T ss_pred cchHHHHHHHHHHHHh--cCCcceeeechhhhhheeechhhhHHHHHHhhh
Confidence 3444444444444443 234333222221 34444444444444444443
No 471
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=31.32 E-value=4.5e+02 Score=24.73 Aligned_cols=78 Identities=10% Similarity=0.090 Sum_probs=50.0
Q ss_pred HHHHHHHHHCCCCCChhHHHHHHHHHhcccchhhhHHHHHHHhhhcCCCchhHHHHHHHHHH----------hcCChHHH
Q 007519 317 TYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYA----------KCGVIDNA 386 (600)
Q Consensus 317 ~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----------~~~~~~~A 386 (600)
.++++.|...++.|.-..|..+.-.+.+.=.+..+..+|+.+...... |..|+..|+ -.|++...
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD~~r-----fd~Ll~iCcsmlil~Re~il~~DF~~n 337 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSDPQR-----FDFLLYICCSMLILVRERILEGDFTVN 337 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcChhh-----hHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 467788888888888888887777777777777888888766653322 444444443 23555555
Q ss_pred HHHHhcCCCCChh
Q 007519 387 YNIFSNMVSRDLV 399 (600)
Q Consensus 387 ~~~~~~~~~~~~~ 399 (600)
.++++.-..-|+.
T Consensus 338 mkLLQ~yp~tdi~ 350 (370)
T KOG4567|consen 338 MKLLQNYPTTDIS 350 (370)
T ss_pred HHHHhcCCCCCHH
Confidence 5555555444443
No 472
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=31.04 E-value=2.9e+02 Score=22.62 Aligned_cols=62 Identities=16% Similarity=0.042 Sum_probs=42.1
Q ss_pred HHHHhhCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhcccc
Q 007519 286 YYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATAN 347 (600)
Q Consensus 286 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~ 347 (600)
...+++..-+-+.--..++..+.+.+++-.|.++++++.+.+...+..|....++.+...|-
T Consensus 9 ~~~lk~~glr~T~qR~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Gl 70 (145)
T COG0735 9 IERLKEAGLRLTPQRLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGL 70 (145)
T ss_pred HHHHHHcCCCcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCC
Confidence 33333333333444566778888888889999999999998877777776666666655543
No 473
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=30.98 E-value=3.6e+02 Score=25.70 Aligned_cols=77 Identities=13% Similarity=0.140 Sum_probs=47.0
Q ss_pred HHHhcCChHHHHHHHhcCC-------CCChhhHH--HHHHHHHhcCChHHHHHHHHHHHH-----cCCCCChh-HHHHHH
Q 007519 376 MYAKCGVIDNAYNIFSNMV-------SRDLVSWN--SMVMGFSHHGLANETLKVFESMLE-----SGTHPNSV-TFLGIL 440 (600)
Q Consensus 376 ~~~~~~~~~~A~~~~~~~~-------~~~~~~~~--~l~~~~~~~~~~~~a~~~~~~m~~-----~~~~p~~~-~~~~l~ 440 (600)
..-+.++.++|.++++++. .|+.+.|- .+...+...|+..++.+++.+..+ .|++|+.. .|..+-
T Consensus 84 ~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~fY~ls 163 (380)
T KOG2908|consen 84 VSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSSFYSLS 163 (380)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhhHHHHH
Confidence 3344556777777776664 45555443 345566778888888888888877 57777553 344443
Q ss_pred -HHhcccCchHHH
Q 007519 441 -SACSHAGLVSRG 452 (600)
Q Consensus 441 -~~~~~~g~~~~a 452 (600)
..|-..|++...
T Consensus 164 sqYyk~~~d~a~y 176 (380)
T KOG2908|consen 164 SQYYKKIGDFASY 176 (380)
T ss_pred HHHHHHHHhHHHH
Confidence 334445555543
No 474
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=30.33 E-value=3.6e+02 Score=23.32 Aligned_cols=155 Identities=15% Similarity=0.131 Sum_probs=0.0
Q ss_pred cCCCCCChhhHHHHHHHHHhcCChhhHHHHhcccC------------CCCchhHHHHHHHHHhcCChHHHHHHHhhCCC-
Q 007519 228 DNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVP------------VRDEISWTSMIDGYLSVGQVSNAYYLFHNMPD- 294 (600)
Q Consensus 228 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~- 294 (600)
+.|..++...++.++..+.+..-...-...+-.+. ..+......-+..|-+.|++.+--.+|-.+..
T Consensus 1 eAGm~l~~Eh~~yiiklL~qlq~s~qEi~~vl~~KsR~~~~~~~~~~~~~l~~~~~eie~Ckek~DW~klg~ly~nv~~g 80 (233)
T PF14669_consen 1 EAGMVLDPEHFNYIIKLLYQLQASKQEIDAVLEIKSRLQARQFKKNWLSDLASAVVEIEHCKEKGDWTKLGNLYINVKMG 80 (233)
T ss_pred CCcccCCHHHHHHHHHHHHhhcCchhhhHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhhccHHHHhhHHhhHHhh
Q ss_pred ------------------------CChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhcccchhh
Q 007519 295 ------------------------RDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDL 350 (600)
Q Consensus 295 ------------------------~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~ 350 (600)
+....|-....+-++.-+.+++.+.+---.. .+++-.|.+..++.+
T Consensus 81 ce~~~dlq~~~~~va~~Ltkd~Kdk~~vPFceFAetV~k~~q~~e~dK~~LGRiG----------iS~m~~Yhk~~qW~K 150 (233)
T PF14669_consen 81 CEKFADLQRFCACVAEALTKDSKDKPGVPFCEFAETVCKDPQNDEVDKTLLGRIG----------ISLMYSYHKTLQWSK 150 (233)
T ss_pred cCCHHHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHhcCCccchhhhhhhhHHH----------HHHHHHHHHHHHHHH
Q ss_pred hHHHHHHHhhhcC--------------CCchhHHHHHHHHHHhcCChHHHHHHHhc
Q 007519 351 GRQIHCVLMKTES--------------ESDLILENCLISMYAKCGVIDNAYNIFSN 392 (600)
Q Consensus 351 a~~~~~~~~~~~~--------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 392 (600)
++.++..+.+..+ .+--.+.|.....+.+.|.++.|..++++
T Consensus 151 GrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 151 GRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred HHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhc
No 475
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=29.89 E-value=2.5e+02 Score=23.65 Aligned_cols=35 Identities=9% Similarity=0.004 Sum_probs=15.2
Q ss_pred hhhhHHHHHHHhhhcCCCchhHHHHHHHHHHhcCC
Q 007519 348 IDLGRQIHCVLMKTESESDLILENCLISMYAKCGV 382 (600)
Q Consensus 348 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 382 (600)
.-.|.+++..+.+.+...+..+....++.+...|-
T Consensus 41 hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Gl 75 (169)
T PRK11639 41 AISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGF 75 (169)
T ss_pred CCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCC
Confidence 33444444444444444444433334444444443
No 476
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=29.84 E-value=2.9e+02 Score=21.98 Aligned_cols=41 Identities=29% Similarity=0.391 Sum_probs=24.3
Q ss_pred HHHHHHHHHhhcCCCCC-cchHHHHHHHHhhcCChHHHHHHHH
Q 007519 452 GWELFNAMFDVYKIQPG-PEHYVSMINLLGRAGKIKEAEEFVL 493 (600)
Q Consensus 452 a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~ 493 (600)
..++|..|... ++.-. +..|...+..+...|++.+|.++++
T Consensus 82 p~~if~~L~~~-~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 82 PRELFQFLYSK-GIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred HHHHHHHHHHC-CcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 44556655554 44442 4455566666667777777776664
No 477
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=29.82 E-value=5e+02 Score=24.78 Aligned_cols=134 Identities=15% Similarity=0.180 Sum_probs=0.0
Q ss_pred CCChhhHHHHHHHHHhcCC------------hHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccCchHHHHHHHHHHHhh
Q 007519 395 SRDLVSWNSMVMGFSHHGL------------ANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDV 462 (600)
Q Consensus 395 ~~~~~~~~~l~~~~~~~~~------------~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 462 (600)
+.|+.+|-.++..--..-. .+.-+.++++..+. -+-+......++..+.+..+.+...+-|+++...
T Consensus 16 P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~-np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~ 94 (321)
T PF08424_consen 16 PHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKH-NPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFK 94 (321)
T ss_pred cccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q ss_pred cCCCC-CcchHHHHHHHHhh---cCChHHHHHHHHhCC-------CCC----------CHHHHHHHHHHHh--hhhCCHH
Q 007519 463 YKIQP-GPEHYVSMINLLGR---AGKIKEAEEFVLRLP-------FEP----------DHRIWGALLGACG--FCEGNAE 519 (600)
Q Consensus 463 ~~~~p-~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~-------~~p----------~~~~~~~l~~~~~--~~~g~~~ 519 (600)
.| +...|...+..... .-.+++..++|.+.. ... +......++..|. ...|-.+
T Consensus 95 ---~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E 171 (321)
T PF08424_consen 95 ---NPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTE 171 (321)
T ss_pred ---CCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchH
Q ss_pred HHHHHHHHHHhhC
Q 007519 520 IAEHAAKRLLELD 532 (600)
Q Consensus 520 ~a~~~~~~~~~~~ 532 (600)
.|+.+++-+++++
T Consensus 172 ~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 172 RAVALWQALLEFN 184 (321)
T ss_pred HHHHHHHHHHHHH
No 478
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=29.23 E-value=3.6e+02 Score=28.36 Aligned_cols=23 Identities=13% Similarity=0.288 Sum_probs=14.4
Q ss_pred HHHHHHHhcCChhhHHHHhcccC
Q 007519 240 SMINGYIRFGRLEEAQNLFDTVP 262 (600)
Q Consensus 240 ~l~~~~~~~~~~~~a~~~~~~~~ 262 (600)
.|+.+|...|++-.+.++++.+.
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~ 55 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFI 55 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHh
Confidence 56666666666666666665554
No 479
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=29.12 E-value=54 Score=30.91 Aligned_cols=117 Identities=15% Similarity=0.087 Sum_probs=60.2
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCCC-cchHHHHHHHHhhcCChHH
Q 007519 409 SHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPG-PEHYVSMINLLGRAGKIKE 487 (600)
Q Consensus 409 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~ 487 (600)
...|.+++|++.|...+... +|....|..=..++.+.++...|++-+.... .+.|| ..-|-.=..+-.-.|+|++
T Consensus 125 ln~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~---ein~Dsa~~ykfrg~A~rllg~~e~ 200 (377)
T KOG1308|consen 125 LNDGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAI---EINPDSAKGYKFRGYAERLLGNWEE 200 (377)
T ss_pred hcCcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhh---ccCcccccccchhhHHHHHhhchHH
Confidence 34566777777777666542 3344444444556666777777777666665 34554 3333333344445677777
Q ss_pred HHHHHHhCC-CCCCHHHHHHHHHHHhhhhCCHHHHHHHHHHHHh
Q 007519 488 AEEFVLRLP-FEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLE 530 (600)
Q Consensus 488 A~~~~~~~~-~~p~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~ 530 (600)
|...+.... ..-+..+-..+-...- +.+..++-...+++..+
T Consensus 201 aa~dl~~a~kld~dE~~~a~lKeV~p-~a~ki~e~~~k~er~~~ 243 (377)
T KOG1308|consen 201 AAHDLALACKLDYDEANSATLKEVFP-NAGKIEEHRRKYERARE 243 (377)
T ss_pred HHHHHHHHHhccccHHHHHHHHHhcc-chhhhhhchhHHHHHHH
Confidence 776665543 2222222222222222 34444444444554444
No 480
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=28.93 E-value=7.9e+02 Score=26.80 Aligned_cols=54 Identities=15% Similarity=0.196 Sum_probs=38.7
Q ss_pred hcCChHHHHHHHhcCCCCC---hh-hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 007519 379 KCGVIDNAYNIFSNMVSRD---LV-SWNSMVMGFSHHGLANETLKVFESMLESGTHPN 432 (600)
Q Consensus 379 ~~~~~~~A~~~~~~~~~~~---~~-~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~ 432 (600)
-.++++.++.+++.+...+ .. .|-..++.-...|+...+..+++.....-..|+
T Consensus 474 l~~nmd~~R~iWn~imty~~~~iag~Wle~~~lE~~~g~~~~~R~~~R~ay~~~~~~~ 531 (881)
T KOG0128|consen 474 LLKNMDKAREIWNFIMTYGGGSIAGKWLEAINLEREYGDGPSARKVLRKAYSQVVDPE 531 (881)
T ss_pred HhhchhhhhHhhhccccCCcchHHHHHHHHHhHHHHhCCchhHHHHHHHHHhcCcCch
Confidence 4688999999999887432 33 455555556677888888888888877655665
No 481
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=28.53 E-value=2.4e+02 Score=20.72 Aligned_cols=27 Identities=22% Similarity=0.241 Sum_probs=13.4
Q ss_pred CcchHHHHHHHHhhcCChHHHHHHHHh
Q 007519 468 GPEHYVSMINLLGRAGKIKEAEEFVLR 494 (600)
Q Consensus 468 ~~~~~~~l~~~~~~~g~~~~A~~~~~~ 494 (600)
|......+...+...|++++|++.+-+
T Consensus 21 D~~ar~~lA~~~~~~g~~e~Al~~Ll~ 47 (90)
T PF14561_consen 21 DLDARYALADALLAAGDYEEALDQLLE 47 (90)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 344455555555555555555554433
No 482
>PF13934 ELYS: Nuclear pore complex assembly
Probab=28.07 E-value=4.4e+02 Score=23.58 Aligned_cols=69 Identities=25% Similarity=0.224 Sum_probs=29.6
Q ss_pred HHHHhcccCchHHHHHHHHHHHhhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHh
Q 007519 439 ILSACSHAGLVSRGWELFNAMFDVYKIQP-GPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACG 512 (600)
Q Consensus 439 l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~ 512 (600)
++.++...|+.+.|..+++...- .+ +......+... ...|.+.+|..+.+.....-....+..++..+.
T Consensus 114 Il~~L~~~~~~~lAL~y~~~~~p----~l~s~~~~~~~~~~-La~~~v~EAf~~~R~~~~~~~~~l~e~l~~~~~ 183 (226)
T PF13934_consen 114 ILQALLRRGDPKLALRYLRAVGP----PLSSPEALTLYFVA-LANGLVTEAFSFQRSYPDELRRRLFEQLLEHCL 183 (226)
T ss_pred HHHHHHHCCChhHHHHHHHhcCC----CCCCHHHHHHHHHH-HHcCCHHHHHHHHHhCchhhhHHHHHHHHHHHH
Confidence 44444445555555555553321 11 12222222222 444556666655555442222334444444443
No 483
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=27.62 E-value=2e+02 Score=20.47 Aligned_cols=49 Identities=12% Similarity=0.075 Sum_probs=21.8
Q ss_pred CCcchHHHHHHHHHcCCChhHHHHHhhhcCCCChhhHHHHHHHHHhcCC
Q 007519 40 RNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGR 88 (600)
Q Consensus 40 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~ 88 (600)
++...-...+.++.+.++.+-...+.+.+..+|+.+-...+.++.+-|+
T Consensus 12 ~~~~vr~~a~~~L~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~~ 60 (88)
T PF13646_consen 12 PDPQVRAEAARALGELGDPEAIPALIELLKDEDPMVRRAAARALGRIGD 60 (88)
T ss_dssp SSHHHHHHHHHHHHCCTHHHHHHHHHHHHTSSSHHHHHHHHHHHHCCHH
T ss_pred CCHHHHHHHHHHHHHcCCHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC
Confidence 3444444444555444444333333333333555555555555555543
No 484
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=27.23 E-value=5.3e+02 Score=24.27 Aligned_cols=73 Identities=14% Similarity=0.210 Sum_probs=48.4
Q ss_pred HHHHHHHHHcCCCCChhHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCCCcchHHHHHHHHh----------hcCChHH
Q 007519 418 LKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLG----------RAGKIKE 487 (600)
Q Consensus 418 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~----------~~g~~~~ 487 (600)
.++|+.+...++.|.-..|..+.-.+.+.=.+...+.+|+.+... |. -+..|+..|+ -.|++..
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD----~~--rfd~Ll~iCcsmlil~Re~il~~DF~~ 336 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSD----PQ--RFDFLLYICCSMLILVRERILEGDFTV 336 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcC----hh--hhHHHHHHHHHHHHHHHHHHHhcchHH
Confidence 467777777788888887777766667766777788888877643 22 2444444443 2567777
Q ss_pred HHHHHHhCC
Q 007519 488 AEEFVLRLP 496 (600)
Q Consensus 488 A~~~~~~~~ 496 (600)
-+++++..+
T Consensus 337 nmkLLQ~yp 345 (370)
T KOG4567|consen 337 NMKLLQNYP 345 (370)
T ss_pred HHHHHhcCC
Confidence 777776654
No 485
>PRK09462 fur ferric uptake regulator; Provisional
Probab=27.22 E-value=3.5e+02 Score=22.13 Aligned_cols=58 Identities=9% Similarity=0.133 Sum_probs=27.7
Q ss_pred HHHCCCCCChhHHHHHHHHHhc-ccchhhhHHHHHHHhhhcCCCchhHHHHHHHHHHhcC
Q 007519 323 MRAHGVPPLNATFSVLFGAAGA-TANIDLGRQIHCVLMKTESESDLILENCLISMYAKCG 381 (600)
Q Consensus 323 m~~~g~~p~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 381 (600)
+.+.|++++..-... +..+.. .+..-.|.++++.+.+.+...+..+....++.+...|
T Consensus 8 l~~~glr~T~qR~~I-l~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~G 66 (148)
T PRK09462 8 LKKAGLKVTLPRLKI-LEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAG 66 (148)
T ss_pred HHHcCCCCCHHHHHH-HHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
Confidence 344555554443322 222222 2345566666666666655555544444444544444
No 486
>cd08323 CARD_APAF1 Caspase activation and recruitment domain similar to that found in Apoptotic Protease-Activating Factor 1. Caspase activation and recruitment domain (CARD) similar to that found in apoptotic protease-activating factor 1 (APAF-1), which is an activator of caspase-9. APAF-1 contains WD-40 repeats, a CARD, and an ATPase domain. Upon stimulation, APAF-1, together with caspase-9, forms the heptameric 'apoptosome', which leads to the processing and activation of caspase-9, starting a caspase cascade which leads to apoptosis. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effect
Probab=27.16 E-value=2.1e+02 Score=20.84 Aligned_cols=54 Identities=15% Similarity=0.197 Sum_probs=25.6
Q ss_pred HHhcccCCchhHHHHHHHHHhcCChhHHHHHHccCCCCCcchHHHHHHHHHhcC
Q 007519 158 FEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNG 211 (600)
Q Consensus 158 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~ 211 (600)
++.+.+.++.+....-..-.+....++|..+++.+..++..+|..+..++...|
T Consensus 20 ld~L~~~gvlt~~~~e~I~~~~t~~~qa~~Lld~L~trG~~Af~~F~~aL~~~~ 73 (86)
T cd08323 20 MDHMISDGVLTLDEEEKVKSKATQKEKAVMLINMILTKDNHAYVSFYNALLHEG 73 (86)
T ss_pred HHHHHhcCCCCHHHHHHHHcCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 333333333333333333334444555555555555555555555555554444
No 487
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=26.95 E-value=1.4e+02 Score=27.24 Aligned_cols=53 Identities=11% Similarity=0.135 Sum_probs=25.3
Q ss_pred HHHHhcccCchHHHHHHHHHHHhhcC---C-CCCcchHHHHHHHHhhcCChHHHHHH
Q 007519 439 ILSACSHAGLVSRGWELFNAMFDVYK---I-QPGPEHYVSMINLLGRAGKIKEAEEF 491 (600)
Q Consensus 439 l~~~~~~~g~~~~a~~~~~~~~~~~~---~-~p~~~~~~~l~~~~~~~g~~~~A~~~ 491 (600)
+..-|...|++++|.++|+.+...+. + .+...+...+..++.+.|+.+....+
T Consensus 184 ~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~ 240 (247)
T PF11817_consen 184 MAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTT 240 (247)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 34455666666666666666543221 1 11233333444445555555544433
No 488
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=26.65 E-value=2.4e+02 Score=20.04 Aligned_cols=61 Identities=11% Similarity=0.097 Sum_probs=26.1
Q ss_pred cCCchhHHHHHHHHHhcCChhHHHHHHccCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHH
Q 007519 163 ERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMK 224 (600)
Q Consensus 163 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 224 (600)
+++...-...+...++.++.+-.-.+.+.+..++..+-...+.++.+.|+ +++...+.++.
T Consensus 11 ~~~~~vr~~a~~~L~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~~-~~~~~~L~~~l 71 (88)
T PF13646_consen 11 DPDPQVRAEAARALGELGDPEAIPALIELLKDEDPMVRRAAARALGRIGD-PEAIPALIKLL 71 (88)
T ss_dssp SSSHHHHHHHHHHHHCCTHHHHHHHHHHHHTSSSHHHHHHHHHHHHCCHH-HHTHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-HHHHHHHHHHH
Confidence 34444444444555544433332233333333444444445555554443 33444444443
No 489
>KOG2168 consensus Cullins [Cell cycle control, cell division, chromosome partitioning]
Probab=25.92 E-value=9e+02 Score=26.49 Aligned_cols=17 Identities=24% Similarity=0.214 Sum_probs=14.1
Q ss_pred hhcCChHHHHHHHHhCC
Q 007519 480 GRAGKIKEAEEFVLRLP 496 (600)
Q Consensus 480 ~~~g~~~~A~~~~~~~~ 496 (600)
...|++++|.+.++.+.
T Consensus 718 y~~~~~e~aL~~le~l~ 734 (835)
T KOG2168|consen 718 YHNGEWEEALSILEHLD 734 (835)
T ss_pred HhhhHHHHHHHHHHHHh
Confidence 47789999999988875
No 490
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=25.84 E-value=1.1e+02 Score=28.42 Aligned_cols=80 Identities=10% Similarity=0.028 Sum_probs=57.3
Q ss_pred CCCCCcchHHHHHHHHhhcCChHHHHHHHHhCC-CCCC-HHHHHHHHH-HHhhhhCCHHHHHHHHHHHHhhCCCCCCcHH
Q 007519 464 KIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLP-FEPD-HRIWGALLG-ACGFCEGNAEIAEHAAKRLLELDPLNAPAHV 540 (600)
Q Consensus 464 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~-~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 540 (600)
.+..|+..|...+.--.+.|.+.+...++.+.. ..|. ...|-.... -+. ..++++.+..++.+.+.++|++|.+|.
T Consensus 102 kff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~-~~ani~s~Ra~f~~glR~N~~~p~iw~ 180 (435)
T COG5191 102 KFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELF-EIANIESSRAMFLKGLRMNSRSPRIWI 180 (435)
T ss_pred cCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhh-hhccHHHHHHHHHhhhccCCCCchHHH
Confidence 344477788877776677788888888877653 5553 444443222 244 779999999999999999999998887
Q ss_pred HHhH
Q 007519 541 VLCN 544 (600)
Q Consensus 541 ~l~~ 544 (600)
....
T Consensus 181 eyfr 184 (435)
T COG5191 181 EYFR 184 (435)
T ss_pred HHHH
Confidence 6544
No 491
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]
Probab=25.71 E-value=5.5e+02 Score=25.42 Aligned_cols=69 Identities=16% Similarity=0.181 Sum_probs=42.1
Q ss_pred HcCCCCChhHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCCCcchHHHHHHH--------HhhcCChHHHHHHHHhCC
Q 007519 426 ESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINL--------LGRAGKIKEAEEFVLRLP 496 (600)
Q Consensus 426 ~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~--------~~~~g~~~~A~~~~~~~~ 496 (600)
...+.|+..+.+.+...++..-..+-...+|+-..+. -.|-...+..|+-. -.+...-+++.++++.|+
T Consensus 176 tkkitPd~Y~lnWf~sLFas~~Stev~~a~WdlY~qq--aDPF~vffLaliiLiNake~ILq~~sdsKEe~ikfLenmp 252 (669)
T KOG3636|consen 176 TKKITPDMYTLNWFASLFASSMSTEVCHALWDLYIQQ--ADPFLVFFLALIILINAKEEILQVKSDSKEEAIKFLENMP 252 (669)
T ss_pred ccccCchHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--CCceehHHHHHHHhcccHHHHhhhccccHHHHHHHHHcCc
Confidence 3457888887777766665555666666777766652 34443333333321 135556788888888886
No 492
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=25.47 E-value=2.9e+02 Score=23.35 Aligned_cols=33 Identities=12% Similarity=0.045 Sum_probs=13.9
Q ss_pred CChHHHHHHHHHHHHcCCCCChhHHHHHHHHhc
Q 007519 412 GLANETLKVFESMLESGTHPNSVTFLGILSACS 444 (600)
Q Consensus 412 ~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~ 444 (600)
++.-.|.++++.+.+.+..++..|....+..+.
T Consensus 39 ~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~ 71 (169)
T PRK11639 39 PGAISAYDLLDLLREAEPQAKPPTVYRALDFLL 71 (169)
T ss_pred CCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHH
Confidence 333444445555544443344433333333333
No 493
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=25.39 E-value=9.1e+02 Score=26.37 Aligned_cols=58 Identities=17% Similarity=0.125 Sum_probs=27.6
Q ss_pred eeHHHHHHHHHHCCChhHHHHHhhcC---CCCCcccHHHHHHHHH---hcCCHhHHHHHHHhcc
Q 007519 105 VSWNSMVVGLIRNGELNEARKVFNSM---PIKNVISWNAMIAGYV---ECCMMGEAIVLFEEME 162 (600)
Q Consensus 105 ~~~~~l~~~~~~~~~~~~a~~~~~~~---~~~~~~~~~~l~~~~~---~~~~~~~A~~~~~~~~ 162 (600)
..++.||..+.+.|++++....-..| ...++..|..-+.... ..++...+..+|++..
T Consensus 114 ~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ekal 177 (881)
T KOG0128|consen 114 AQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLPPHLWLEWLKDELSMTQSEERKEVEELFEKAL 177 (881)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCcchhHHHHHHHHHh
Confidence 34455666666666665443333333 2234444444443222 2355555555555554
No 494
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=25.31 E-value=1.6e+02 Score=22.64 Aligned_cols=46 Identities=17% Similarity=0.188 Sum_probs=29.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccCch
Q 007519 404 MVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLV 449 (600)
Q Consensus 404 l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~ 449 (600)
++..+...+..-.|.++++.+.+.+..++..|....++.+...|-+
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli 51 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLV 51 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCE
Confidence 4455555566667778888887776666666666666666555543
No 495
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=25.23 E-value=2.8e+02 Score=20.28 Aligned_cols=26 Identities=4% Similarity=-0.013 Sum_probs=11.9
Q ss_pred HHHHHHhhhcCCCchhHHHHHHHHHH
Q 007519 353 QIHCVLMKTESESDLILENCLISMYA 378 (600)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~l~~~~~ 378 (600)
++|+.....|+..|+.+|..+++...
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~ 54 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLR 54 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHH
Confidence 34444444444444444444444433
No 496
>PHA00425 DNA packaging protein, small subunit
Probab=25.02 E-value=2.6e+02 Score=19.83 Aligned_cols=52 Identities=23% Similarity=0.337 Sum_probs=30.4
Q ss_pred hHHHHHHHHHHHhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHH
Q 007519 449 VSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGA 510 (600)
Q Consensus 449 ~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~ 510 (600)
.+.|...+..+.. .-.-++..||++...+.+.. |.-.+..||..++..+..+
T Consensus 15 TE~a~~mL~DL~d--dekRtPQLYnAIgKlL~RHk--------F~isKl~pD~~iLg~la~~ 66 (88)
T PHA00425 15 TEMAQRMLADLKD--DEKRTPQLYNAIGKLLDRHK--------FQISKLQPDENILGGLAAA 66 (88)
T ss_pred HHHHHHHHHHhcC--ccccChHHHHHHHHHHHHhc--------ccccccCCcHHHHHHHHHH
Confidence 4556666666653 22335677888777766654 3333467777765555444
No 497
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=24.64 E-value=5.1e+02 Score=23.14 Aligned_cols=21 Identities=29% Similarity=0.354 Sum_probs=10.1
Q ss_pred HHHHHhcCChhhHHHHhcccC
Q 007519 242 INGYIRFGRLEEAQNLFDTVP 262 (600)
Q Consensus 242 ~~~~~~~~~~~~a~~~~~~~~ 262 (600)
|......|+++.|.+....+.
T Consensus 71 Ir~~I~~G~Ie~Aie~in~l~ 91 (228)
T KOG2659|consen 71 IRRAIEEGQIEEAIEKVNQLN 91 (228)
T ss_pred HHHHHHhccHHHHHHHHHHhC
Confidence 334445555555555544443
No 498
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=24.54 E-value=3.3e+02 Score=28.58 Aligned_cols=75 Identities=11% Similarity=0.046 Sum_probs=51.5
Q ss_pred HHHHHHHhcCChhHHHHHHccCCCC---C---cchHHHHHHHHHhcCChhH--HHHHHHHHHhhhcCCCCCChhhHHHHH
Q 007519 171 SMISGYCRAGEVEEGYCLFRRMPRK---N---VVSWTAMIGGFAWNGFHKE--SLLLFIEMKGICDNGNNCNVQSCNSMI 242 (600)
Q Consensus 171 ~l~~~~~~~g~~~~A~~~~~~~~~~---~---~~~~~~li~~~~~~~~~~~--a~~~~~~~~~~~~~~~~~~~~~~~~l~ 242 (600)
+|+.+|...|++.++.++++..... + ...+|..|+...+.|.++- ...-..+..+. ..+.-|..||..++
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~--a~ln~d~~t~all~ 110 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQ--ARLNGDSLTYALLC 110 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHH--hhcCCcchHHHHHH
Confidence 7899999999999999999887642 2 3468888999999997652 22222222221 13566788888887
Q ss_pred HHHHh
Q 007519 243 NGYIR 247 (600)
Q Consensus 243 ~~~~~ 247 (600)
.+-..
T Consensus 111 ~~sln 115 (1117)
T COG5108 111 QASLN 115 (1117)
T ss_pred HhhcC
Confidence 75544
No 499
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=24.53 E-value=6e+02 Score=23.97 Aligned_cols=178 Identities=13% Similarity=0.091 Sum_probs=0.0
Q ss_pred ChHHHHHHHhhC--CCCChhhHHHHHHHHHhCC-----ChhHHHHHHHH---------HHHCCCCCC--hhHHHHHHHHH
Q 007519 281 QVSNAYYLFHNM--PDRDAVAWTAMISGLVQNE-----LFVEATYLFME---------MRAHGVPPL--NATFSVLFGAA 342 (600)
Q Consensus 281 ~~~~A~~~~~~~--~~~~~~~~~~li~~~~~~g-----~~~~a~~~~~~---------m~~~g~~p~--~~~~~~l~~~~ 342 (600)
.+..+++++..+ .+.+...|..++..+.... ..+.....|+. +.+.|..+. .......++..
T Consensus 55 ~~~~~l~l~~~~~~~E~~~~vw~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~lr~~ 134 (324)
T PF11838_consen 55 SYSDFLDLLEYLLPNETDYVVWSTALSNLSSLRNRLYAEDEELQEAFRKFVRRLLEPLYERLGWDPRPGEDHNDRLLRAL 134 (324)
T ss_dssp -HHHHHHHHGGG-GT--SHHHHHHHHHHHHHHHHHHCSC-HHHHHHHHHHHHHHHHHHHHH--SSSS--SCHHHHHHHHH
T ss_pred CHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHcCCCCcccccHHHHHHHHH
Q ss_pred -hcccc-----hhhhHHHHHHHhhhcC----CCchhHHHHHHHHHHhcCChHHHHHHHhcCC-CCChhhHHHHHHHHHhc
Q 007519 343 -GATAN-----IDLGRQIHCVLMKTES----ESDLILENCLISMYAKCGVIDNAYNIFSNMV-SRDLVSWNSMVMGFSHH 411 (600)
Q Consensus 343 -~~~~~-----~~~a~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~~~~~~~l~~~~~~~ 411 (600)
....- ...+.+.+......+. ..++.....+.....+.|+.+.-..+++... .++......++.+++..
T Consensus 135 ~~~~a~~~~~~~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~~~~~~k~~~l~aLa~~ 214 (324)
T PF11838_consen 135 LLSLACGDPECVAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNSTSPEEKRRLLSALACS 214 (324)
T ss_dssp HHHHHHT-HHHHHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTTSTHHHHHHHHHHHTT-
T ss_pred HHHHhccchhHHHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhccCCHHHHHHHHHhhhcc
Q ss_pred CChHHHHHHHHHHHHcCCCCChhHHHHHHHHh-cccCchHHHHHHHHH
Q 007519 412 GLANETLKVFESMLESGTHPNSVTFLGILSAC-SHAGLVSRGWELFNA 458 (600)
Q Consensus 412 ~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~-~~~g~~~~a~~~~~~ 458 (600)
.+.+...++++.....+..++......+.... ......+.+++.+..
T Consensus 215 ~d~~~~~~~l~~~l~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (324)
T PF11838_consen 215 PDPELLKRLLDLLLSNDKVRSQDIRYVLAGLASSNPVGRDLAWEFFKE 262 (324)
T ss_dssp S-HHHHHHHHHHHHCTSTS-TTTHHHHHHHHH-CSTTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHcCCcccccHHHHHHHHHHhcCChhhHHHHHHHHHH
No 500
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=24.45 E-value=6.2e+02 Score=24.12 Aligned_cols=94 Identities=11% Similarity=0.034 Sum_probs=49.5
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHhhcCCCCCceeHHHHHHHHHHCCChhHHHHHhhcCC-CCCcccHHHHHHHHHhcC
Q 007519 71 RNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMP-IKNVISWNAMIAGYVECC 149 (600)
Q Consensus 71 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~l~~~~~~~~ 149 (600)
++..+.......+...+..+....+.+.+...+.......+.++...|+......+.+.+. .++..+-.....++.+.+
T Consensus 55 ~~~~vr~~aa~~l~~~~~~~av~~l~~~l~d~~~~vr~~a~~aLg~~~~~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~ 134 (335)
T COG1413 55 EDLLVRLSAAVALGELGSEEAVPLLRELLSDEDPRVRDAAADALGELGDPEAVPPLVELLENDENEGVRAAAARALGKLG 134 (335)
T ss_pred CCHHHHHHHHHHHhhhchHHHHHHHHHHhcCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCcHhHHHHHHHHHHhcC
Confidence 3333333333334444443333333333334555445555556666666666555555555 366666666666666666
Q ss_pred CHhHHHHHHHhcccC
Q 007519 150 MMGEAIVLFEEMEER 164 (600)
Q Consensus 150 ~~~~A~~~~~~~~~~ 164 (600)
+......+++.+.++
T Consensus 135 ~~~a~~~l~~~l~~~ 149 (335)
T COG1413 135 DERALDPLLEALQDE 149 (335)
T ss_pred chhhhHHHHHHhccc
Confidence 666666666555543
Done!