Query 007519
Match_columns 600
No_of_seqs 553 out of 2972
Neff 11.5
Searched_HMMs 29240
Date Mon Mar 25 03:47:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007519.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007519hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 1.3E-40 4.3E-45 348.6 30.9 487 55-565 66-579 (597)
2 2xpi_A Anaphase-promoting comp 100.0 3E-39 1E-43 338.1 38.4 458 83-566 63-546 (597)
3 1w3b_A UDP-N-acetylglucosamine 100.0 3.3E-27 1.1E-31 232.6 35.3 370 143-551 7-388 (388)
4 1w3b_A UDP-N-acetylglucosamine 100.0 7.8E-26 2.7E-30 222.8 36.4 350 203-565 5-368 (388)
5 4g26_A Pentatricopeptide repea 99.9 1.1E-26 3.8E-31 232.1 19.8 184 298-482 27-223 (501)
6 4g26_A Pentatricopeptide repea 99.9 2E-25 6.8E-30 223.1 19.7 198 314-512 7-221 (501)
7 2gw1_A Mitochondrial precursor 99.9 4.9E-23 1.7E-27 211.0 30.6 221 335-562 240-475 (514)
8 2gw1_A Mitochondrial precursor 99.9 3E-23 1E-27 212.6 28.7 368 166-542 6-489 (514)
9 3fp2_A TPR repeat-containing p 99.9 3.1E-23 1.1E-27 213.7 27.4 426 106-538 27-498 (537)
10 3fp2_A TPR repeat-containing p 99.9 1.2E-22 4E-27 209.4 28.7 415 135-566 25-492 (537)
11 2y4t_A DNAJ homolog subfamily 99.9 6.6E-22 2.3E-26 198.9 31.1 315 197-545 26-372 (450)
12 2y4t_A DNAJ homolog subfamily 99.9 4.6E-21 1.6E-25 192.7 32.1 360 164-554 24-443 (450)
13 1xi4_A Clathrin heavy chain; a 99.9 1.1E-16 3.9E-21 169.4 49.4 370 13-412 987-1415(1630)
14 3ieg_A DNAJ homolog subfamily 99.8 5.2E-19 1.8E-23 171.8 28.1 319 197-549 3-353 (359)
15 1xi4_A Clathrin heavy chain; a 99.8 7.8E-17 2.7E-21 170.6 45.3 466 40-557 871-1376(1630)
16 3ieg_A DNAJ homolog subfamily 99.8 4.2E-18 1.4E-22 165.4 29.6 301 235-565 3-335 (359)
17 1b89_A Protein (clathrin heavy 99.8 2.4E-18 8.3E-23 163.5 26.3 341 22-393 14-369 (449)
18 3hym_B Cell division cycle pro 99.8 3.9E-18 1.3E-22 163.5 26.8 251 299-553 58-322 (330)
19 1b89_A Protein (clathrin heavy 99.8 3.9E-18 1.4E-22 162.1 23.0 355 10-391 31-412 (449)
20 2xm6_A Protein corresponding t 99.8 9.7E-17 3.3E-21 162.6 33.5 365 164-548 37-452 (490)
21 1fch_A Peroxisomal targeting s 99.8 5.7E-18 2E-22 165.2 23.5 256 299-560 66-354 (368)
22 3hym_B Cell division cycle pro 99.8 2.9E-17 9.8E-22 157.5 27.2 263 295-564 20-298 (330)
23 1fch_A Peroxisomal targeting s 99.8 1E-17 3.6E-22 163.3 20.7 284 177-529 36-357 (368)
24 3mkr_A Coatomer subunit epsilo 99.8 1.8E-16 6E-21 148.0 27.6 241 273-558 41-287 (291)
25 2xm6_A Protein corresponding t 99.8 1.3E-15 4.6E-20 154.2 35.6 351 195-567 37-434 (490)
26 2ooe_A Cleavage stimulation fa 99.8 2E-15 6.9E-20 154.5 36.2 404 134-565 12-492 (530)
27 4g1t_A Interferon-induced prot 99.8 1.8E-16 6.2E-21 160.2 27.4 253 310-576 188-470 (472)
28 4eqf_A PEX5-related protein; a 99.8 3.4E-17 1.1E-21 159.5 20.0 255 299-560 67-351 (365)
29 2ooe_A Cleavage stimulation fa 99.8 3E-15 1E-19 153.3 34.4 402 41-495 12-489 (530)
30 3cv0_A Peroxisome targeting si 99.7 2.1E-16 7.1E-21 151.2 20.7 255 300-561 24-311 (327)
31 4eqf_A PEX5-related protein; a 99.7 2.6E-16 8.8E-21 153.2 21.0 263 197-494 65-352 (365)
32 3mkr_A Coatomer subunit epsilo 99.7 3.4E-16 1.2E-20 146.0 19.3 243 307-565 9-264 (291)
33 4g1t_A Interferon-induced prot 99.7 8.4E-16 2.9E-20 155.3 22.5 374 134-543 50-471 (472)
34 3cv0_A Peroxisome targeting si 99.7 2.5E-15 8.5E-20 143.7 22.4 274 198-532 22-316 (327)
35 2pl2_A Hypothetical conserved 99.7 2.1E-15 7.1E-20 134.4 17.8 194 364-562 2-211 (217)
36 3uq3_A Heat shock protein STI1 99.6 2.6E-14 8.9E-19 131.3 20.4 223 298-564 6-235 (258)
37 3uq3_A Heat shock protein STI1 99.6 1.6E-14 5.6E-19 132.7 18.8 233 266-543 5-254 (258)
38 3spa_A Mtrpol, DNA-directed RN 99.6 5.3E-16 1.8E-20 159.4 7.1 147 266-412 127-286 (1134)
39 3e4b_A ALGK; tetratricopeptide 99.6 3.2E-14 1.1E-18 141.7 19.7 371 50-461 11-420 (452)
40 3u4t_A TPR repeat-containing p 99.6 4.5E-14 1.5E-18 131.0 19.3 242 303-550 9-269 (272)
41 1xnf_A Lipoprotein NLPI; TPR, 99.6 1E-13 3.5E-18 128.8 21.3 241 309-559 17-269 (275)
42 3e4b_A ALGK; tetratricopeptide 99.6 1.8E-13 6.1E-18 136.3 23.1 374 172-562 9-418 (452)
43 3spa_A Mtrpol, DNA-directed RN 99.6 1.5E-15 5.1E-20 156.1 8.0 112 368-480 128-247 (1134)
44 2h6f_A Protein farnesyltransfe 99.6 4.4E-13 1.5E-17 129.2 22.4 244 298-549 98-366 (382)
45 2ho1_A Type 4 fimbrial biogene 99.5 3.9E-13 1.3E-17 123.0 19.7 195 368-565 38-238 (252)
46 2vq2_A PILW, putative fimbrial 99.5 5.5E-13 1.9E-17 119.6 20.0 197 366-565 7-211 (225)
47 2pl2_A Hypothetical conserved 99.5 4.4E-13 1.5E-17 119.2 19.0 110 381-495 98-211 (217)
48 2q7f_A YRRB protein; TPR, prot 99.5 2E-13 6.8E-18 124.2 16.6 175 369-548 59-239 (243)
49 3u4t_A TPR repeat-containing p 99.5 1.4E-12 4.8E-17 120.8 21.8 233 268-502 5-255 (272)
50 2q7f_A YRRB protein; TPR, prot 99.5 2.5E-13 8.6E-18 123.5 15.5 196 366-566 22-223 (243)
51 1ouv_A Conserved hypothetical 99.5 3.9E-12 1.3E-16 117.9 23.7 223 296-565 5-251 (273)
52 1ouv_A Conserved hypothetical 99.5 5.3E-12 1.8E-16 117.0 24.5 230 264-534 4-254 (273)
53 2ho1_A Type 4 fimbrial biogene 99.5 2.2E-12 7.4E-17 118.0 21.3 204 297-540 37-247 (252)
54 2h6f_A Protein farnesyltransfe 99.5 9.6E-13 3.3E-17 126.9 18.7 223 333-562 98-344 (382)
55 4a1s_A PINS, partner of inscut 99.5 3E-13 1E-17 133.8 14.6 260 302-564 53-371 (411)
56 2vq2_A PILW, putative fimbrial 99.5 4.7E-12 1.6E-16 113.4 20.9 206 297-542 8-222 (225)
57 3vtx_A MAMA; tetratricopeptide 99.5 2.8E-12 9.5E-17 110.9 18.4 163 397-564 4-169 (184)
58 4abn_A Tetratricopeptide repea 99.5 4E-13 1.4E-17 134.7 14.9 190 365-560 100-316 (474)
59 1xnf_A Lipoprotein NLPI; TPR, 99.5 1.6E-12 5.4E-17 120.7 17.2 239 210-456 18-269 (275)
60 3sf4_A G-protein-signaling mod 99.5 9.6E-13 3.3E-17 129.8 16.6 286 267-553 10-364 (406)
61 3sf4_A G-protein-signaling mod 99.5 3.3E-13 1.1E-17 133.2 12.8 269 198-495 10-333 (406)
62 3ro2_A PINS homolog, G-protein 99.5 1.1E-12 3.7E-17 125.6 15.9 259 303-564 11-331 (338)
63 3vtx_A MAMA; tetratricopeptide 99.4 4.1E-12 1.4E-16 109.9 16.0 165 366-535 4-174 (184)
64 4e6h_A MRNA 3'-END-processing 99.4 3.1E-10 1.1E-14 116.8 31.3 407 102-536 64-575 (679)
65 2ond_A Cleavage stimulation fa 99.4 8.1E-11 2.8E-15 111.0 23.5 219 314-538 33-277 (308)
66 4a1s_A PINS, partner of inscut 99.4 3.1E-12 1.1E-16 126.4 13.9 266 236-533 49-374 (411)
67 3ulq_A Response regulator aspa 99.4 2.5E-11 8.5E-16 118.6 19.6 226 306-532 112-369 (383)
68 3ro2_A PINS homolog, G-protein 99.4 6E-12 2E-16 120.4 14.4 98 435-533 225-334 (338)
69 4gyw_A UDP-N-acetylglucosamine 99.4 1.1E-11 3.8E-16 129.2 17.3 161 397-563 8-172 (723)
70 2ond_A Cleavage stimulation fa 99.3 5.7E-11 2E-15 112.0 19.1 179 314-495 81-267 (308)
71 3ulq_A Response regulator aspa 99.3 1.1E-11 3.6E-16 121.2 13.7 225 338-564 109-367 (383)
72 4e6h_A MRNA 3'-END-processing 99.3 1E-09 3.5E-14 113.0 27.9 124 40-163 64-222 (679)
73 4i17_A Hypothetical protein; T 99.3 8.4E-11 2.9E-15 105.5 16.9 205 330-546 5-224 (228)
74 3as5_A MAMA; tetratricopeptide 99.3 3.4E-11 1.2E-15 104.0 13.8 161 368-533 9-175 (186)
75 3as5_A MAMA; tetratricopeptide 99.3 1.6E-10 5.3E-15 99.8 17.6 163 399-566 9-174 (186)
76 1hz4_A MALT regulatory protein 99.3 1.9E-09 6.4E-14 104.8 27.3 51 274-324 22-80 (373)
77 3nf1_A KLC 1, kinesin light ch 99.3 3.6E-12 1.2E-16 120.5 7.2 97 297-393 27-137 (311)
78 3nf1_A KLC 1, kinesin light ch 99.3 1E-11 3.6E-16 117.4 9.9 244 265-533 26-309 (311)
79 3q15_A PSP28, response regulat 99.3 1E-09 3.5E-14 106.9 23.9 226 304-530 108-364 (378)
80 4abn_A Tetratricopeptide repea 99.3 5.8E-11 2E-15 119.0 14.8 178 383-565 84-287 (474)
81 4i17_A Hypothetical protein; T 99.2 1.3E-10 4.4E-15 104.3 15.5 185 368-565 8-209 (228)
82 3q15_A PSP28, response regulat 99.2 1.2E-09 4.1E-14 106.3 19.7 230 172-425 107-363 (378)
83 1qqe_A Vesicular transport pro 99.1 4.4E-10 1.5E-14 104.9 14.1 185 375-560 45-264 (292)
84 1hz4_A MALT regulatory protein 99.1 1.1E-08 3.8E-13 99.3 24.6 217 206-425 23-280 (373)
85 4gyw_A UDP-N-acetylglucosamine 99.1 4.4E-10 1.5E-14 117.2 14.8 162 366-533 8-176 (723)
86 3qky_A Outer membrane assembly 99.1 2.3E-09 7.8E-14 98.3 15.5 186 366-555 14-251 (261)
87 3mv2_B Coatomer subunit epsilo 99.1 1E-08 3.5E-13 93.5 19.1 242 276-540 23-291 (310)
88 3mv2_B Coatomer subunit epsilo 99.1 1.3E-08 4.3E-13 92.9 19.5 174 386-565 85-282 (310)
89 4ga2_A E3 SUMO-protein ligase 99.1 1.2E-10 4.1E-15 96.4 5.3 138 408-551 7-149 (150)
90 3qky_A Outer membrane assembly 99.0 7.3E-09 2.5E-13 94.9 16.8 170 395-566 12-225 (261)
91 3edt_B KLC 2, kinesin light ch 99.0 3.9E-10 1.3E-14 104.7 8.1 30 533-562 249-278 (283)
92 2pzi_A Probable serine/threoni 99.0 1E-09 3.4E-14 115.2 11.9 145 398-548 433-580 (681)
93 3urz_A Uncharacterized protein 99.0 3.6E-09 1.2E-13 93.1 13.8 125 404-534 60-189 (208)
94 2yhc_A BAMD, UPF0169 lipoprote 99.0 1E-08 3.4E-13 91.5 16.5 183 367-570 4-218 (225)
95 3edt_B KLC 2, kinesin light ch 99.0 8.4E-09 2.9E-13 95.6 15.6 198 334-532 45-282 (283)
96 1qqe_A Vesicular transport pro 99.0 2.9E-08 9.9E-13 92.5 18.5 211 304-540 44-278 (292)
97 3qou_A Protein YBBN; thioredox 99.0 9.3E-09 3.2E-13 95.5 15.0 172 384-560 103-279 (287)
98 2fo7_A Synthetic consensus TPR 99.0 9.5E-09 3.2E-13 83.0 13.4 126 401-562 4-129 (136)
99 2fo7_A Synthetic consensus TPR 99.0 2.2E-08 7.5E-13 80.8 14.9 122 369-494 3-128 (136)
100 3rjv_A Putative SEL1 repeat pr 98.9 4.6E-08 1.6E-12 86.1 17.6 162 396-567 16-199 (212)
101 4ga2_A E3 SUMO-protein ligase 98.9 2.7E-09 9.1E-14 88.2 8.9 121 439-563 3-127 (150)
102 2uy1_A Cleavage stimulation fa 98.9 1.1E-06 3.6E-11 88.0 27.7 363 117-530 7-412 (493)
103 3gyz_A Chaperone protein IPGC; 98.9 8.1E-09 2.8E-13 84.8 10.2 102 464-566 30-134 (151)
104 2r5s_A Uncharacterized protein 98.9 1.3E-08 4.4E-13 86.8 11.4 73 488-561 93-169 (176)
105 2vsy_A XCC0866; transferase, g 98.9 2.9E-08 1E-12 102.2 16.2 159 380-543 2-169 (568)
106 2pzi_A Probable serine/threoni 98.9 1.2E-07 4E-12 99.5 20.8 142 366-512 432-579 (681)
107 2vsy_A XCC0866; transferase, g 98.9 1.9E-08 6.5E-13 103.6 14.5 151 411-566 2-158 (568)
108 4gco_A Protein STI-1; structur 98.8 2E-08 6.8E-13 80.0 10.2 107 435-545 15-124 (126)
109 2ifu_A Gamma-SNAP; membrane fu 98.8 1.3E-07 4.6E-12 88.7 17.0 220 309-557 3-253 (307)
110 2uy1_A Cleavage stimulation fa 98.8 6.8E-07 2.3E-11 89.3 22.5 341 56-425 28-411 (493)
111 3urz_A Uncharacterized protein 98.8 3.7E-08 1.3E-12 86.5 11.8 155 404-565 10-186 (208)
112 2qfc_A PLCR protein; TPR, HTH, 98.8 1.5E-07 5.1E-12 87.7 16.5 162 399-561 76-262 (293)
113 2r5s_A Uncharacterized protein 98.8 5.4E-08 1.8E-12 82.9 12.1 155 370-530 9-172 (176)
114 2vgx_A Chaperone SYCD; alterna 98.8 1.6E-08 5.4E-13 83.3 8.1 92 469-561 21-114 (148)
115 4gco_A Protein STI-1; structur 98.8 3E-08 1E-12 78.9 9.3 101 464-565 7-110 (126)
116 2yhc_A BAMD, UPF0169 lipoprote 98.8 2.3E-07 8E-12 82.6 16.0 185 332-538 4-220 (225)
117 3u3w_A Transcriptional activat 98.7 5.6E-07 1.9E-11 83.8 18.6 160 403-563 80-264 (293)
118 2c2l_A CHIP, carboxy terminus 98.7 4.9E-08 1.7E-12 90.2 11.1 191 367-565 4-199 (281)
119 3qou_A Protein YBBN; thioredox 98.7 3.8E-07 1.3E-11 84.5 16.9 152 340-493 125-279 (287)
120 1hh8_A P67PHOX, NCF-2, neutrop 98.7 1.7E-07 5.6E-12 82.7 13.4 127 399-533 7-152 (213)
121 3rjv_A Putative SEL1 repeat pr 98.7 6.7E-07 2.3E-11 78.6 16.6 173 351-533 5-199 (212)
122 3dra_A Protein farnesyltransfe 98.7 8.8E-06 3E-10 75.0 24.5 221 314-542 50-299 (306)
123 2lni_A Stress-induced-phosphop 98.7 1.7E-07 5.8E-12 75.3 11.5 115 433-551 16-133 (133)
124 1a17_A Serine/threonine protei 98.7 2.1E-07 7.3E-12 78.1 12.4 124 436-563 16-144 (166)
125 3dra_A Protein farnesyltransfe 98.7 2.1E-06 7.3E-11 79.2 19.8 210 349-564 50-286 (306)
126 1hh8_A P67PHOX, NCF-2, neutrop 98.7 3.7E-07 1.3E-11 80.4 14.1 132 369-501 8-154 (213)
127 2vyi_A SGTA protein; chaperone 98.6 2.3E-07 8E-12 74.1 11.3 116 434-553 13-131 (131)
128 3u3w_A Transcriptional activat 98.6 3.1E-06 1.1E-10 78.7 20.4 158 373-531 81-266 (293)
129 2xcb_A PCRH, regulatory protei 98.6 1.6E-07 5.4E-12 76.7 9.9 91 470-561 19-111 (142)
130 1na0_A Designed protein CTPR3; 98.6 3.8E-07 1.3E-11 72.1 11.9 113 434-550 10-125 (125)
131 1p5q_A FKBP52, FK506-binding p 98.6 2.1E-07 7E-12 88.5 11.8 93 469-562 196-291 (336)
132 3gyz_A Chaperone protein IPGC; 98.6 1.2E-07 4E-12 77.8 8.7 96 435-534 38-136 (151)
133 2kck_A TPR repeat; tetratricop 98.6 3.6E-07 1.2E-11 70.7 11.2 99 468-567 5-108 (112)
134 2e2e_A Formate-dependent nitri 98.6 1.2E-07 4.2E-12 80.7 8.7 125 408-537 20-150 (177)
135 2vgx_A Chaperone SYCD; alterna 98.6 8.3E-08 2.8E-12 78.9 6.9 103 434-540 22-127 (148)
136 2ifu_A Gamma-SNAP; membrane fu 98.6 2.6E-07 8.8E-12 86.7 10.8 197 344-563 3-222 (307)
137 3upv_A Heat shock protein STI1 98.5 3.9E-07 1.3E-11 72.5 9.4 88 472-560 7-96 (126)
138 4f3v_A ESX-1 secretion system 98.5 3.6E-07 1.2E-11 82.2 10.0 125 404-533 108-239 (282)
139 2e2e_A Formate-dependent nitri 98.5 8.5E-07 2.9E-11 75.5 11.6 117 444-564 21-143 (177)
140 1hxi_A PEX5, peroxisome target 98.5 3.6E-07 1.2E-11 72.0 8.4 94 470-564 18-113 (121)
141 2qfc_A PLCR protein; TPR, HTH, 98.5 1.4E-06 4.9E-11 81.0 13.1 162 369-531 77-266 (293)
142 2xcb_A PCRH, regulatory protei 98.5 7E-07 2.4E-11 72.8 9.4 103 436-542 21-126 (142)
143 3gw4_A Uncharacterized protein 98.5 7.8E-07 2.7E-11 77.6 10.4 153 379-532 4-177 (203)
144 3sz7_A HSC70 cochaperone (SGT) 98.5 1.3E-06 4.5E-11 73.2 11.3 107 434-544 12-121 (164)
145 2c2l_A CHIP, carboxy terminus 98.5 1.9E-07 6.5E-12 86.2 6.5 90 11-100 4-99 (281)
146 1elw_A TPR1-domain of HOP; HOP 98.4 1.9E-06 6.4E-11 67.2 11.0 106 436-545 7-115 (118)
147 3upv_A Heat shock protein STI1 98.4 1E-06 3.5E-11 70.0 9.4 106 436-545 7-121 (126)
148 3lvg_A Clathrin heavy chain 1; 98.4 1.4E-07 4.8E-12 88.7 4.7 442 9-492 52-535 (624)
149 3gw4_A Uncharacterized protein 98.4 3.9E-06 1.3E-10 73.0 13.9 153 409-563 3-174 (203)
150 3q49_B STIP1 homology and U bo 98.4 1.4E-06 4.9E-11 70.3 10.1 99 432-534 8-109 (137)
151 3sz7_A HSC70 cochaperone (SGT) 98.4 9.3E-07 3.2E-11 74.1 9.3 96 468-564 10-107 (164)
152 4gcn_A Protein STI-1; structur 98.4 8.8E-07 3E-11 70.5 8.5 94 436-533 11-114 (127)
153 2fbn_A 70 kDa peptidylprolyl i 98.4 1.5E-06 5.2E-11 75.4 10.8 165 378-564 15-185 (198)
154 4f3v_A ESX-1 secretion system 98.4 2.6E-06 9E-11 76.6 12.3 173 54-226 18-237 (282)
155 1a17_A Serine/threonine protei 98.4 3E-06 1E-10 71.0 12.0 126 400-530 15-145 (166)
156 2dba_A Smooth muscle cell asso 98.4 3.2E-06 1.1E-10 69.1 11.9 108 435-546 30-143 (148)
157 1kt0_A FKBP51, 51 kDa FK506-bi 98.4 2E-06 6.8E-11 85.5 12.4 145 398-565 268-415 (457)
158 1elw_A TPR1-domain of HOP; HOP 98.4 2.3E-06 7.8E-11 66.7 9.8 96 469-565 4-101 (118)
159 4gcn_A Protein STI-1; structur 98.3 1.1E-06 3.8E-11 69.9 7.7 89 471-560 10-107 (127)
160 3q49_B STIP1 homology and U bo 98.3 2.7E-06 9.1E-11 68.7 9.8 94 468-562 8-103 (137)
161 2lni_A Stress-induced-phosphop 98.3 2.3E-06 7.9E-11 68.5 9.4 97 468-565 15-113 (133)
162 1na0_A Designed protein CTPR3; 98.3 8.1E-06 2.8E-10 64.2 12.4 92 400-495 11-103 (125)
163 1hxi_A PEX5, peroxisome target 98.3 3.4E-06 1.2E-10 66.3 9.1 97 436-536 20-119 (121)
164 1wao_1 Serine/threonine protei 98.3 1.7E-06 5.8E-11 86.3 9.0 118 439-560 12-134 (477)
165 2dba_A Smooth muscle cell asso 98.3 5.1E-06 1.7E-10 67.9 10.3 97 468-565 27-128 (148)
166 2vyi_A SGTA protein; chaperone 98.3 9.9E-06 3.4E-10 64.4 11.7 89 372-461 17-108 (131)
167 3q7a_A Farnesyltransferase alp 98.3 0.00041 1.4E-08 64.6 23.8 169 309-484 66-257 (349)
168 2xev_A YBGF; tetratricopeptide 98.3 2.9E-06 9.8E-11 67.6 8.3 99 438-540 7-114 (129)
169 3dss_A Geranylgeranyl transfer 98.3 0.00021 7.3E-09 66.2 21.7 218 308-533 40-306 (331)
170 2hr2_A Hypothetical protein; a 98.2 2.4E-06 8.2E-11 69.2 7.6 101 436-540 14-140 (159)
171 3dss_A Geranylgeranyl transfer 98.2 0.00013 4.6E-09 67.6 19.7 209 350-564 48-303 (331)
172 1ihg_A Cyclophilin 40; ppiase 98.2 2.7E-06 9.4E-11 81.6 8.5 135 400-557 225-362 (370)
173 2kck_A TPR repeat; tetratricop 98.2 8.3E-06 2.8E-10 62.8 9.8 99 434-536 7-111 (112)
174 3q7a_A Farnesyltransferase alp 98.2 8.1E-05 2.8E-09 69.4 17.9 210 349-564 71-330 (349)
175 1dce_A Protein (RAB geranylger 98.2 5.3E-05 1.8E-09 77.0 18.1 169 381-554 43-244 (567)
176 3lvg_A Clathrin heavy chain 1; 98.2 1.7E-06 5.9E-11 81.5 6.4 257 41-318 53-325 (624)
177 1p5q_A FKBP52, FK506-binding p 98.2 1.7E-05 5.9E-10 75.1 13.6 144 381-530 127-293 (336)
178 2xev_A YBGF; tetratricopeptide 98.2 2.1E-05 7.3E-10 62.4 11.7 86 405-495 9-102 (129)
179 2hr2_A Hypothetical protein; a 98.2 5.7E-06 1.9E-10 67.0 7.8 94 469-563 11-129 (159)
180 3k9i_A BH0479 protein; putativ 98.2 2.4E-06 8E-11 66.8 5.5 92 446-538 3-97 (117)
181 3rkv_A Putative peptidylprolyl 98.1 1.5E-06 5E-11 72.7 4.5 77 469-546 63-142 (162)
182 2if4_A ATFKBP42; FKBP-like, al 98.1 6.6E-06 2.3E-10 78.1 9.3 145 398-563 179-326 (338)
183 4b4t_Q 26S proteasome regulato 98.1 1.5E-05 5.3E-10 78.7 12.2 161 400-561 57-241 (434)
184 1elr_A TPR2A-domain of HOP; HO 98.1 6.2E-06 2.1E-10 65.6 7.6 93 471-564 6-107 (131)
185 1elr_A TPR2A-domain of HOP; HO 98.1 8.4E-06 2.9E-10 64.8 8.4 105 438-547 9-123 (131)
186 2fbn_A 70 kDa peptidylprolyl i 98.1 5.7E-06 1.9E-10 71.8 7.7 145 340-489 12-176 (198)
187 4b4t_Q 26S proteasome regulato 98.1 6E-05 2E-09 74.5 15.9 153 273-425 11-202 (434)
188 3rkv_A Putative peptidylprolyl 98.1 7E-06 2.4E-10 68.5 7.7 94 471-565 13-126 (162)
189 1wao_1 Serine/threonine protei 98.1 6.6E-06 2.3E-10 82.0 8.3 115 375-493 14-134 (477)
190 3k9i_A BH0479 protein; putativ 98.1 2.3E-06 7.8E-11 66.9 3.7 83 481-564 2-89 (117)
191 3ro3_A PINS homolog, G-protein 98.1 7E-06 2.4E-10 68.2 6.9 91 471-562 51-155 (164)
192 2if4_A ATFKBP42; FKBP-like, al 98.0 1.3E-05 4.4E-10 76.0 9.1 150 367-536 179-333 (338)
193 3ro3_A PINS homolog, G-protein 98.0 1.7E-05 5.8E-10 65.8 8.6 133 400-533 11-160 (164)
194 2l6j_A TPR repeat-containing p 98.0 7.4E-06 2.5E-10 63.1 5.9 91 468-559 3-101 (111)
195 3n71_A Histone lysine methyltr 98.0 3.1E-05 1.1E-09 76.7 10.3 123 443-566 319-465 (490)
196 1na3_A Designed protein CTPR2; 97.9 3.1E-05 1E-09 56.9 7.5 81 469-550 9-91 (91)
197 3ma5_A Tetratricopeptide repea 97.8 7.4E-05 2.5E-09 56.1 8.3 61 501-562 7-67 (100)
198 1kt0_A FKBP51, 51 kDa FK506-bi 97.8 0.00019 6.4E-09 71.2 12.5 125 367-495 268-412 (457)
199 1zu2_A Mitochondrial import re 97.7 3.7E-05 1.3E-09 62.1 5.0 108 447-565 16-147 (158)
200 2kat_A Uncharacterized protein 97.7 7E-05 2.4E-09 58.0 6.4 80 451-534 3-85 (115)
201 1klx_A Cysteine rich protein B 97.7 0.0002 6.8E-09 57.5 9.1 109 413-531 10-126 (138)
202 1zu2_A Mitochondrial import re 97.6 3.9E-05 1.3E-09 62.0 4.0 86 479-565 12-120 (158)
203 3bee_A Putative YFRE protein; 97.6 0.00022 7.6E-09 52.3 7.8 69 499-568 4-75 (93)
204 2kat_A Uncharacterized protein 97.6 0.00012 4.1E-09 56.6 6.6 76 416-495 3-79 (115)
205 2l6j_A TPR repeat-containing p 97.6 6.5E-05 2.2E-09 57.6 4.9 94 398-495 4-104 (111)
206 1ihg_A Cyclophilin 40; ppiase 97.6 0.00029 9.9E-09 67.5 10.4 115 370-488 226-360 (370)
207 1dce_A Protein (RAB geranylger 97.5 0.002 6.9E-08 65.4 15.4 147 411-563 42-219 (567)
208 1klx_A Cysteine rich protein B 97.5 0.0017 5.7E-08 52.0 12.0 113 446-567 8-128 (138)
209 3n71_A Histone lysine methyltr 97.4 0.00069 2.3E-08 67.1 10.5 131 206-360 318-463 (490)
210 3ly7_A Transcriptional activat 97.3 0.0057 1.9E-07 57.0 14.6 135 395-533 191-341 (372)
211 3ma5_A Tetratricopeptide repea 97.3 0.00078 2.7E-08 50.4 7.5 64 397-461 6-69 (100)
212 1na3_A Designed protein CTPR2; 97.2 0.00081 2.8E-08 49.0 7.1 64 501-565 9-72 (91)
213 3ly7_A Transcriptional activat 97.2 0.0033 1.1E-07 58.6 11.6 130 429-563 190-337 (372)
214 2kc7_A BFR218_protein; tetratr 97.2 0.0021 7.2E-08 47.7 8.6 64 475-539 6-72 (99)
215 3qww_A SET and MYND domain-con 97.1 0.0019 6.5E-08 62.8 9.6 94 445-539 310-424 (433)
216 3mkq_A Coatomer beta'-subunit; 97.0 0.011 3.8E-07 63.5 16.3 153 18-189 606-759 (814)
217 3qww_A SET and MYND domain-con 97.0 0.0017 6E-08 63.0 8.3 83 481-564 310-410 (433)
218 3qwp_A SET and MYND domain-con 96.9 0.0052 1.8E-07 59.8 11.0 100 440-540 294-414 (429)
219 2kc7_A BFR218_protein; tetratr 96.9 0.0022 7.5E-08 47.6 6.6 58 508-566 7-65 (99)
220 3qwp_A SET and MYND domain-con 96.9 0.0035 1.2E-07 61.0 9.3 88 476-564 294-399 (429)
221 3mkq_A Coatomer beta'-subunit; 96.8 0.031 1.1E-06 60.0 16.8 152 112-289 607-759 (814)
222 1qsa_A Protein (soluble lytic 96.7 0.68 2.3E-05 47.0 26.2 317 176-530 16-347 (618)
223 3ltm_A Alpha-REP4; protein eng 96.7 0.25 8.7E-06 42.4 19.1 157 67-224 27-183 (211)
224 3u64_A Protein TP_0956; tetrat 96.5 0.0094 3.2E-07 53.1 8.2 56 516-571 218-275 (301)
225 1pc2_A Mitochondria fission pr 96.4 0.0072 2.5E-07 48.2 6.6 88 447-537 12-106 (152)
226 2v5f_A Prolyl 4-hydroxylase su 96.4 0.0098 3.4E-07 44.6 7.1 72 471-543 7-87 (104)
227 3ltm_A Alpha-REP4; protein eng 96.3 0.2 6.9E-06 43.1 16.2 157 25-181 16-172 (211)
228 3ltj_A Alpharep-4; protein eng 96.2 0.23 7.9E-06 42.3 16.1 175 34-209 20-195 (201)
229 3bee_A Putative YFRE protein; 96.2 0.033 1.1E-06 40.5 9.0 66 468-534 5-75 (93)
230 3ltj_A Alpharep-4; protein eng 96.1 0.54 1.8E-05 39.9 19.5 162 63-225 18-179 (201)
231 3mkq_B Coatomer subunit alpha; 95.9 0.32 1.1E-05 39.8 14.1 45 378-424 16-60 (177)
232 4ady_A RPN2, 26S proteasome re 95.9 2.2 7.7E-05 45.1 29.2 159 342-504 500-664 (963)
233 1wy6_A Hypothetical protein ST 95.5 0.59 2E-05 35.8 15.4 141 408-568 17-157 (172)
234 3u64_A Protein TP_0956; tetrat 95.1 0.046 1.6E-06 48.7 7.0 107 448-563 178-296 (301)
235 3mkq_B Coatomer subunit alpha; 95.1 1.2 4E-05 36.5 15.0 19 375-393 97-115 (177)
236 1nzn_A CGI-135 protein, fissio 95.0 0.15 5.2E-06 39.0 8.6 90 448-540 16-112 (126)
237 1pc2_A Mitochondria fission pr 95.0 0.12 4E-06 41.2 8.3 86 414-502 14-105 (152)
238 1oyz_A Hypothetical protein YI 94.7 2.4 8.1E-05 38.2 18.2 219 33-261 28-260 (280)
239 1qsa_A Protein (soluble lytic 94.5 4.6 0.00016 41.0 30.3 371 145-564 16-409 (618)
240 2v5f_A Prolyl 4-hydroxylase su 94.3 0.12 4E-06 38.5 6.6 64 437-500 9-78 (104)
241 4h7y_A Dual specificity protei 94.2 0.15 5.2E-06 40.0 6.9 101 431-534 11-126 (161)
242 4h7y_A Dual specificity protei 93.8 0.93 3.2E-05 35.6 10.7 113 395-510 10-137 (161)
243 4b4t_P 26S proteasome regulato 93.3 2.2 7.5E-05 41.5 15.3 143 118-261 30-203 (445)
244 3ffl_A Anaphase-promoting comp 93.3 0.2 7E-06 40.2 6.5 128 7-143 16-163 (167)
245 1oyz_A Hypothetical protein YI 93.1 4.7 0.00016 36.2 19.1 17 195-211 140-156 (280)
246 1wy6_A Hypothetical protein ST 92.8 2.6 9E-05 32.4 12.6 139 208-364 18-157 (172)
247 4ady_A RPN2, 26S proteasome re 92.4 13 0.00044 39.5 26.2 254 175-436 383-664 (963)
248 4gns_B Protein CSD3, chitin bi 92.4 0.49 1.7E-05 49.0 9.5 53 509-562 345-397 (754)
249 3ffl_A Anaphase-promoting comp 91.7 0.91 3.1E-05 36.5 8.3 27 470-496 123-149 (167)
250 4fhn_B Nucleoporin NUP120; pro 90.5 18 0.00061 40.2 20.2 143 337-487 817-989 (1139)
251 1nzn_A CGI-135 protein, fissio 88.6 1.7 5.7E-05 33.2 7.1 86 413-501 16-107 (126)
252 2ff4_A Probable regulatory pro 88.5 0.82 2.8E-05 43.6 6.8 49 514-562 183-231 (388)
253 4fhn_B Nucleoporin NUP120; pro 88.5 7.7 0.00026 43.1 15.4 186 238-426 815-1049(1139)
254 1zbp_A Hypothetical protein VP 88.3 6.1 0.00021 34.7 11.4 127 407-540 6-138 (273)
255 4gns_B Protein CSD3, chitin bi 88.1 6.4 0.00022 40.8 13.4 53 441-496 345-398 (754)
256 3o48_A Mitochondria fission 1 87.7 1.6 5.6E-05 33.5 6.6 72 466-538 37-114 (134)
257 1v54_E Cytochrome C oxidase po 87.6 2.2 7.5E-05 30.7 6.6 63 413-477 25-87 (109)
258 2uwj_G Type III export protein 87.0 6.1 0.00021 28.3 8.5 58 275-335 48-105 (115)
259 1y8m_A FIS1; mitochondria, unk 87.0 6.1 0.00021 30.8 9.5 70 466-536 36-111 (144)
260 2p58_C Putative type III secre 86.9 5 0.00017 28.8 8.0 58 275-335 49-106 (116)
261 3lpz_A GET4 (YOR164C homolog); 86.4 20 0.00067 32.9 17.1 111 370-492 38-159 (336)
262 2wpv_A GET4, UPF0363 protein Y 84.5 23 0.0008 32.1 21.0 166 271-462 38-217 (312)
263 2ff4_A Probable regulatory pro 84.4 5 0.00017 38.2 9.8 67 404-471 177-247 (388)
264 3lpz_A GET4 (YOR164C homolog); 84.0 26 0.00087 32.1 21.1 166 270-461 39-215 (336)
265 1y8m_A FIS1; mitochondria, unk 83.8 6.1 0.00021 30.8 8.1 68 497-565 35-106 (144)
266 3txn_A 26S proteasome regulato 83.6 30 0.001 32.7 25.1 57 302-358 104-165 (394)
267 1v54_E Cytochrome C oxidase po 82.8 11 0.00038 27.2 8.7 63 312-375 25-87 (109)
268 4b4t_P 26S proteasome regulato 82.6 36 0.0012 32.9 20.3 185 311-495 30-244 (445)
269 2y69_E Cytochrome C oxidase su 82.4 8.7 0.0003 29.4 8.1 63 413-477 68-130 (152)
270 1zbp_A Hypothetical protein VP 82.2 6.7 0.00023 34.5 8.7 114 442-565 6-129 (273)
271 3o48_A Mitochondria fission 1 81.6 2.8 9.7E-05 32.1 5.4 67 498-565 37-107 (134)
272 2uwj_G Type III export protein 81.0 13 0.00045 26.7 8.7 61 374-437 46-106 (115)
273 2p58_C Putative type III secre 80.4 14 0.00047 26.6 8.9 60 374-436 47-106 (116)
274 2wpv_A GET4, UPF0363 protein Y 78.8 38 0.0013 30.7 18.7 111 370-492 36-157 (312)
275 2y69_E Cytochrome C oxidase su 73.2 27 0.00091 26.8 8.4 62 313-375 69-130 (152)
276 4b4t_R RPN7, 26S proteasome re 72.7 10 0.00036 36.5 8.1 94 369-462 133-237 (429)
277 4b4t_R RPN7, 26S proteasome re 70.9 18 0.00062 34.8 9.4 60 435-495 133-194 (429)
278 3esl_A Checkpoint serine/threo 65.5 59 0.002 27.1 10.4 56 411-467 92-148 (202)
279 2nsz_A Programmed cell death p 53.1 73 0.0025 24.3 8.4 66 269-334 10-80 (129)
280 1te4_A Conserved protein MTH18 51.9 16 0.00054 28.0 4.2 49 133-181 54-102 (131)
281 2ion_A PDCD4, programmed cell 48.2 62 0.0021 25.6 7.1 66 269-334 12-82 (152)
282 4b4t_S RPN3, 26S proteasome re 46.6 52 0.0018 32.2 7.5 25 471-495 233-257 (523)
283 4a1g_A Mitotic checkpoint seri 45.9 1.1E+02 0.0037 24.2 9.3 52 415-467 82-134 (152)
284 3txn_A 26S proteasome regulato 43.6 2.1E+02 0.0073 26.9 21.3 216 337-566 104-344 (394)
285 1wdy_A 2-5A-dependent ribonucl 43.1 1.6E+02 0.0056 25.4 11.6 213 139-356 6-240 (285)
286 2nsz_A Programmed cell death p 41.5 96 0.0033 23.6 7.1 64 371-434 11-79 (129)
287 2wvi_A Mitotic checkpoint seri 40.1 1.4E+02 0.0049 23.9 9.9 51 416-467 78-129 (164)
288 1te4_A Conserved protein MTH18 39.2 41 0.0014 25.5 4.8 68 70-137 53-120 (131)
289 3eiq_C Programmed cell death p 36.9 2.6E+02 0.0088 25.9 14.5 192 170-361 58-321 (358)
290 1n11_A Ankyrin; clathrin, BAND 36.0 2.8E+02 0.0097 26.1 15.8 175 16-193 16-203 (437)
291 2qx5_A Nucleoporin NIC96; mRNA 35.9 3.7E+02 0.013 27.4 19.7 22 480-501 549-570 (661)
292 4aez_C MAD3, mitotic spindle c 35.7 1.9E+02 0.0066 24.5 8.5 52 415-467 131-183 (223)
293 2d2s_A Exocyst complex compone 35.0 93 0.0032 26.8 6.7 26 467-492 89-114 (235)
294 2ion_A PDCD4, programmed cell 33.5 84 0.0029 24.8 5.7 64 371-434 13-81 (152)
295 1ya0_A SMG-7 transcript varian 32.7 1.1E+02 0.0039 29.9 7.6 42 516-557 166-207 (497)
296 3ygs_P Procaspase 9; apoptosis 32.5 54 0.0018 23.5 4.1 38 180-217 51-88 (97)
297 1wgl_A TOLL-interacting protei 31.9 38 0.0013 21.6 2.8 46 524-570 12-57 (59)
298 4b4t_S RPN3, 26S proteasome re 30.6 3.5E+02 0.012 26.5 10.5 60 167-226 232-299 (523)
299 4gq2_M Nucleoporin NUP120; bet 30.6 4.2E+02 0.014 28.6 12.3 52 241-293 816-867 (950)
300 2d2s_A Exocyst complex compone 30.1 1.1E+02 0.0038 26.3 6.3 24 203-226 24-47 (235)
301 1ug3_A EIF4GI, eukaryotic prot 27.2 3.5E+02 0.012 24.7 9.7 25 239-263 15-39 (339)
302 3bqo_A Telomeric repeat-bindin 26.9 2.7E+02 0.0092 23.0 8.6 66 485-551 94-166 (211)
303 3esl_A Checkpoint serine/threo 26.8 2.8E+02 0.0094 23.1 10.9 50 313-362 95-145 (202)
304 4gq2_M Nucleoporin NUP120; bet 26.5 4.2E+02 0.014 28.5 11.5 25 236-260 898-922 (950)
305 2fe3_A Peroxide operon regulat 25.5 2.1E+02 0.0071 22.2 6.8 60 323-383 13-72 (145)
306 3hra_A Ankyrin repeat family p 24.4 2.8E+02 0.0095 22.3 9.5 179 273-457 9-199 (201)
307 2p1h_A APAF-1, apoptotic prote 24.2 1.1E+02 0.0038 21.5 4.6 34 179-212 49-82 (94)
308 3kea_A K1L; tropism, ANK repea 22.7 3.8E+02 0.013 23.3 10.6 184 15-198 32-224 (285)
309 3ygs_P Procaspase 9; apoptosis 22.7 1E+02 0.0034 22.0 4.0 38 56-93 51-88 (97)
310 2zu6_B Programmed cell death p 22.2 2.7E+02 0.0092 25.1 7.6 66 270-335 170-240 (307)
311 2xig_A Ferric uptake regulatio 21.6 2.9E+02 0.0099 21.5 6.9 59 323-382 18-76 (150)
312 2fe3_A Peroxide operon regulat 21.5 2E+02 0.0068 22.3 5.9 14 414-427 37-50 (145)
313 2qfz_A TBC1 domain family memb 21.4 3E+02 0.01 25.2 8.1 79 318-396 230-315 (345)
314 3bqo_A Telomeric repeat-bindin 21.0 2.4E+02 0.0083 23.3 6.2 44 58-101 94-145 (211)
315 3jxi_A Vanilloid receptor-rela 20.5 2.6E+02 0.009 23.8 7.4 88 306-394 11-117 (260)
316 2ijq_A Hypothetical protein; s 20.2 3.3E+02 0.011 21.6 6.8 46 381-426 46-103 (161)
317 3mv2_A Coatomer subunit alpha; 20.0 4.9E+02 0.017 23.5 13.4 60 492-566 196-257 (325)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.3e-40 Score=348.57 Aligned_cols=487 Identities=9% Similarity=-0.006 Sum_probs=295.1
Q ss_pred CCChhHHHHHhhhcCCCChhhHHHHHHHHHhcCChHHHHHHhhcCCC--CCceeHHHHHHHHHHCCChhHHHHHhhcCCC
Q 007519 55 NGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPE--RNVVSWNSMVVGLIRNGELNEARKVFNSMPI 132 (600)
Q Consensus 55 ~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 132 (600)
.|....+...+..+..+++..|+.++..|.+.|++++|+.+|+++.. ||..++..++.+|.+.|++++|+.+|+++..
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 145 (597)
T 2xpi_A 66 DGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLDITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDL 145 (597)
T ss_dssp ----------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCG
T ss_pred cCccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHhhCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhc
Confidence 34444444444444444555555555555555555555555555543 4444555555555555555555555555532
Q ss_pred --CCcccHHHHHHHHHhcCCHhHHHHHHHhcccCCchhHHHHHHHHHhcCChhHHHHHHccCCCCCcchHHHHHHHHHhc
Q 007519 133 --KNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWN 210 (600)
Q Consensus 133 --~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~ 210 (600)
+++.+++.++.+|.+.|++++|.++|+++...+.. ...+.+.++. +.-...+..+|+.++.+|.+.
T Consensus 146 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~~~~~~~-------~~~~~~~~~~~~~l~~~~~~~ 213 (597)
T 2xpi_A 146 YNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKD-----EKNANKLLMQ-------DGGIKLEASMCYLRGQVYTNL 213 (597)
T ss_dssp GGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC---------------CC-------CSSCCHHHHHHHHHHHHHHHT
T ss_pred cccchhHHHHHHHHHHHHhhHHHHHHHHhccCCcccc-----cccccccccc-------ccccchhHHHHHHHHHHHHHc
Confidence 44444555555555555555555555432211100 0000000000 000012356777777777777
Q ss_pred CChhHHHHHHHHHHhhhcCCCCC-ChhhHHHHHHHHHhcCChhhHH--HH-hcccCCCC----chhHHHHHHHHHhcCCh
Q 007519 211 GFHKESLLLFIEMKGICDNGNNC-NVQSCNSMINGYIRFGRLEEAQ--NL-FDTVPVRD----EISWTSMIDGYLSVGQV 282 (600)
Q Consensus 211 ~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~--~~-~~~~~~~~----~~~~~~l~~~~~~~~~~ 282 (600)
|++++|+++|++|.+. .| +...+..+...+...+..+.+. .+ +..+.+.+ ..+++.++..|.+.|++
T Consensus 214 g~~~~A~~~~~~~~~~-----~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 288 (597)
T 2xpi_A 214 SNFDRAKECYKEALMV-----DAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDEL 288 (597)
T ss_dssp TCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHH
T ss_pred CCHHHHHHHHHHHHHh-----CchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchH
Confidence 7777777777777764 33 3444444544443322222111 11 22222222 22344456667777777
Q ss_pred HHHHHHHhhCCC--CChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhcccchhhhHHHHHHHhh
Q 007519 283 SNAYYLFHNMPD--RDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMK 360 (600)
Q Consensus 283 ~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 360 (600)
++|..+|+++.+ ++..+|+.++..|.+.|++++|+.+|+++.+.+ +.+..++..++.++.+.|+.+.|..+++.+.+
T Consensus 289 ~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 367 (597)
T 2xpi_A 289 RRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVD 367 (597)
T ss_dssp HHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 777777777766 677777777777777777777777777777654 33566777777777777777777777777764
Q ss_pred hcCCCchhHHHHHHHHHHhcCChHHHHHHHhcCC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHH
Q 007519 361 TESESDLILENCLISMYAKCGVIDNAYNIFSNMV---SRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFL 437 (600)
Q Consensus 361 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~ 437 (600)
.. +.+..+++.++.+|.+.|++++|.++|+++. +.+..+|+.++.+|.+.|++++|+++|+++.+.+ +.+..++.
T Consensus 368 ~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~ 445 (597)
T 2xpi_A 368 RH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYL 445 (597)
T ss_dssp HC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHH
T ss_pred hC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHH
Confidence 43 3356677777777777788888877777764 4456677777777878888888888887777653 44667777
Q ss_pred HHHHHhcccCchHHHHHHHHHHHhhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHhC-------CCCCC--HHHHHHH
Q 007519 438 GILSACSHAGLVSRGWELFNAMFDVYKIQP-GPEHYVSMINLLGRAGKIKEAEEFVLRL-------PFEPD--HRIWGAL 507 (600)
Q Consensus 438 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~--~~~~~~l 507 (600)
.++.+|.+.|++++|.++|+++.+. .| ++.+|+.++.+|.+.|++++|.++|+++ +..|+ ..+|..+
T Consensus 446 ~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l 522 (597)
T 2xpi_A 446 FLGMQHMQLGNILLANEYLQSSYAL---FQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANL 522 (597)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHH
Confidence 7777777778888888888777754 33 5667777778888888888887777776 23565 5677777
Q ss_pred HHHHhhhhCCHHHHHHHHHHHHhhCCCCCCcHHHHhHHHHhhCCcHHHHHHHHHHhhc
Q 007519 508 LGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLK 565 (600)
Q Consensus 508 ~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 565 (600)
+..|. ..|++++|+..++++++..|+++.++..++.+|.+.|++++|.++++.+.+.
T Consensus 523 ~~~~~-~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 579 (597)
T 2xpi_A 523 GHAYR-KLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAI 579 (597)
T ss_dssp HHHHH-HTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHH-HhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 77777 7788888888888887777777777778888888888888887766666554
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3e-39 Score=338.12 Aligned_cols=458 Identities=10% Similarity=0.013 Sum_probs=359.3
Q ss_pred HHhcCChHHHHHHhhcCCCCCceeHHHHHHHHHHCCChhHHHHHhhcCCC--CCcccHHHHHHHHHhcCCHhHHHHHHHh
Q 007519 83 LADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPI--KNVISWNAMIAGYVECCMMGEAIVLFEE 160 (600)
Q Consensus 83 ~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 160 (600)
+...|.+..+...+..+..++...|+.++..+.+.|++++|+.+|+++.. |+..++..++.+|...|++++|..+|+.
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 142 (597)
T 2xpi_A 63 TSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLDITGNPNDAFWLAQVYCCTGDYARAKCLLTK 142 (597)
T ss_dssp -------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ccccCccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHhhCCCchHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 44567777777788777778888899999999999999999999999875 7778888899999999999999999998
Q ss_pred cc--cCCchhHHHHHHHHHhcCChhHHHHHHccCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhhhcCCCCCChhhH
Q 007519 161 ME--ERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSC 238 (600)
Q Consensus 161 ~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 238 (600)
+. .++..+++.++.+|.+.|++++|.++|+++...+.. ..++... . ..+.+.+++..++
T Consensus 143 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~~~~-------------~-~~~~~~~~~~~~~ 203 (597)
T 2xpi_A 143 EDLYNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKD-----EKNANKL-------------L-MQDGGIKLEASMC 203 (597)
T ss_dssp TCGGGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC-----------------------------CCCSSCCHHHHHH
T ss_pred HhccccchhHHHHHHHHHHHHhhHHHHHHHHhccCCcccc-----ccccccc-------------c-ccccccchhHHHH
Confidence 84 578888999999999999999999999864432211 0111111 1 1134667788999
Q ss_pred HHHHHHHHhcCChhhHHHHhcccC---CCCchhHHHHHHHHHhcCChHHHHHH---HhhCCC----CChhhHHHHHHHHH
Q 007519 239 NSMINGYIRFGRLEEAQNLFDTVP---VRDEISWTSMIDGYLSVGQVSNAYYL---FHNMPD----RDAVAWTAMISGLV 308 (600)
Q Consensus 239 ~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~---~~~~~~----~~~~~~~~li~~~~ 308 (600)
+.++.+|.+.|++++|..+|+++. +.+...+..+...+...+..+.+... +..+.. .....|+.++..|.
T Consensus 204 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (597)
T 2xpi_A 204 YLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTS 283 (597)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHc
Confidence 999999999999999999999997 33445555565544433332222111 222222 12345666788899
Q ss_pred hCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhcccchhhhHHHHHHHhhhcCCCchhHHHHHHHHHHhcCChHHHHH
Q 007519 309 QNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYN 388 (600)
Q Consensus 309 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 388 (600)
+.|++++|.++|+++.+. +++..++..++.++.+.|++++|..+++.+.+.+.. +..++..++.++.+.|++++|..
T Consensus 284 ~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~ 360 (597)
T 2xpi_A 284 HEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPY-NLDVYPLHLASLHESGEKNKLYL 360 (597)
T ss_dssp THHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CCTTHHHHHHHHHHHTCHHHHHH
T ss_pred CcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHhCCHHHHHH
Confidence 999999999999999875 688999999999999999999999999999887644 77889999999999999999999
Q ss_pred HHhcCC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccCchHHHHHHHHHHHhhcCC
Q 007519 389 IFSNMV---SRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKI 465 (600)
Q Consensus 389 ~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 465 (600)
+++++. +.+..+|+.++..|.+.|++++|.++|+++.+.. +.+..+|..++.++.+.|++++|.++|+++.+. .
T Consensus 361 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~ 437 (597)
T 2xpi_A 361 ISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARL--F 437 (597)
T ss_dssp HHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--T
T ss_pred HHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--C
Confidence 999886 5678899999999999999999999999998853 445779999999999999999999999999864 2
Q ss_pred CCCcchHHHHHHHHhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHhhhhCCHHHHHHHHHHHHhh------CCCC-C
Q 007519 466 QPGPEHYVSMINLLGRAGKIKEAEEFVLRLP--FEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLEL------DPLN-A 536 (600)
Q Consensus 466 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~------~p~~-~ 536 (600)
..+..++..++.+|.+.|++++|.++|+++. .+.+..+|..++..+. ..|++++|+..++++++. +|++ .
T Consensus 438 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~ 516 (597)
T 2xpi_A 438 QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAF-NKSDMQTAINHFQNALLLVKKTQSNEKPWA 516 (597)
T ss_dssp TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHSCCCSGGGH
T ss_pred ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH-HhCCHHHHHHHHHHHHHhhhccccchhhHH
Confidence 3378899999999999999999999999985 3456888999999999 999999999999999997 5533 5
Q ss_pred CcHHHHhHHHHhhCCcHHHHHHHHHHhhcC
Q 007519 537 PAHVVLCNIYAASGRHVEEHKLRMDMGLKG 566 (600)
Q Consensus 537 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 566 (600)
.++..++.+|.+.|++++|.++++.+.+.+
T Consensus 517 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 546 (597)
T 2xpi_A 517 ATWANLGHAYRKLKMYDAAIDALNQGLLLS 546 (597)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 689999999999999999999888877654
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.96 E-value=3.3e-27 Score=232.57 Aligned_cols=370 Identities=11% Similarity=0.070 Sum_probs=246.8
Q ss_pred HHHHhcCCHhHHHHHHHhccc--CC-chhHHHHHHHHHhcCChhHHHHHHccCCC---CCcchHHHHHHHHHhcCChhHH
Q 007519 143 AGYVECCMMGEAIVLFEEMEE--RN-VVTWTSMISGYCRAGEVEEGYCLFRRMPR---KNVVSWTAMIGGFAWNGFHKES 216 (600)
Q Consensus 143 ~~~~~~~~~~~A~~~~~~~~~--~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a 216 (600)
..+.+.|++++|.+.++.+.+ |+ ...+..+...+...|++++|...++...+ .+..+|..+...+.+.|++++|
T Consensus 7 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A 86 (388)
T 1w3b_A 7 HREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEA 86 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHH
Confidence 444555666666665555442 22 23344444455555555555555544432 2334455555555555555555
Q ss_pred HHHHHHHHhhhcCCCCCC-hhhHHHHHHHHHhcCChhhHHHHhcccCCCCchhHHHHHHHHHhcCChHHHHHHHhhCCCC
Q 007519 217 LLLFIEMKGICDNGNNCN-VQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDR 295 (600)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 295 (600)
+..|+++.+. .|+ ..+|..+..++.+.|++++|...|+.+...+ ..
T Consensus 87 ~~~~~~al~~-----~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~----------------------------p~ 133 (388)
T 1w3b_A 87 IEHYRHALRL-----KPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN----------------------------PD 133 (388)
T ss_dssp HHHHHHHHHH-----CTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC----------------------------TT
T ss_pred HHHHHHHHHc-----CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----------------------------CC
Confidence 5555555543 232 3345555555555555555555554443100 01
Q ss_pred ChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhcccchhhhHHHHHHHhhhcCCCchhHHHHHHH
Q 007519 296 DAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLIS 375 (600)
Q Consensus 296 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 375 (600)
+...+..+...+...|++++|...|+++.+.. +.+..++..+...+...|+++.|...++.+.+.... +...+..+..
T Consensus 134 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~ 211 (388)
T 1w3b_A 134 LYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGN 211 (388)
T ss_dssp CTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHHHHHH
Confidence 22344445555555566666666666555541 223345555555666666666666666655554322 4556677778
Q ss_pred HHHhcCChHHHHHHHhcCC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccCchHHH
Q 007519 376 MYAKCGVIDNAYNIFSNMV---SRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRG 452 (600)
Q Consensus 376 ~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a 452 (600)
.+...|++++|...|++.. +.+..++..+..++...|++++|+..|+++.+.+ +.+..++..+..++...|++++|
T Consensus 212 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A 290 (388)
T 1w3b_A 212 VLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEA 290 (388)
T ss_dssp HHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence 8888888888888888765 4567888889999999999999999999998853 33467788888999999999999
Q ss_pred HHHHHHHHhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHhhhhCCHHHHHHHHHHHHh
Q 007519 453 WELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLP-FEP-DHRIWGALLGACGFCEGNAEIAEHAAKRLLE 530 (600)
Q Consensus 453 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~ 530 (600)
.+.++++.+. .+.+..++..++..+.+.|++++|.+.++++. ..| +..++..+...+. ..|++++|+..++++++
T Consensus 291 ~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~-~~g~~~~A~~~~~~a~~ 367 (388)
T 1w3b_A 291 EDCYNTALRL--CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQ-QQGKLQEALMHYKEAIR 367 (388)
T ss_dssp HHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHH-TTTCCHHHHHHHHHHHT
T ss_pred HHHHHHHHhh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH-HcCCHHHHHHHHHHHHh
Confidence 9999999875 23367889999999999999999999998875 445 4677888888888 99999999999999999
Q ss_pred hCCCCCCcHHHHhHHHHhhCC
Q 007519 531 LDPLNAPAHVVLCNIYAASGR 551 (600)
Q Consensus 531 ~~p~~~~~~~~l~~~~~~~g~ 551 (600)
+.|+++.++..++.++...|+
T Consensus 368 ~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 368 ISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp TCTTCHHHHHHHHHHHHHTCC
T ss_pred hCCCCHHHHHhHHHHHHHccC
Confidence 999999999999998887764
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.96 E-value=7.8e-26 Score=222.77 Aligned_cols=350 Identities=14% Similarity=0.090 Sum_probs=293.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhhhcCCCCCC-hhhHHHHHHHHHhcCChhhHHHHhcccC---CCCchhHHHHHHHHHh
Q 007519 203 MIGGFAWNGFHKESLLLFIEMKGICDNGNNCN-VQSCNSMINGYIRFGRLEEAQNLFDTVP---VRDEISWTSMIDGYLS 278 (600)
Q Consensus 203 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~ 278 (600)
+...+.+.|++++|++.+..+.+. .|+ ...+..+...+...|++++|...++... +.+..++..+...+.+
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~-----~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~ 79 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQ-----EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKE 79 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHH
Confidence 345566778888888888887764 444 4455566667777888888888777665 5566678888888888
Q ss_pred cCChHHHHHHHhhCCC--C-ChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChh-HHHHHHHHHhcccchhhhHHH
Q 007519 279 VGQVSNAYYLFHNMPD--R-DAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNA-TFSVLFGAAGATANIDLGRQI 354 (600)
Q Consensus 279 ~~~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~~~~~~a~~~ 354 (600)
.|++++|+..|+++.. | +..+|..+..++.+.|++++|+..|+++.+. .|+.. .+..+...+...|++++|...
T Consensus 80 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~ 157 (388)
T 1w3b_A 80 RGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQY--NPDLYCVRSDLGNLLKALGRLEEAKAC 157 (388)
T ss_dssp HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--CTTCTHHHHHHHHHHHTTSCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHH
Confidence 8888888888887654 3 4567899999999999999999999999886 46554 556667788889999999999
Q ss_pred HHHHhhhcCCCchhHHHHHHHHHHhcCChHHHHHHHhcCC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 007519 355 HCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMV---SRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHP 431 (600)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p 431 (600)
+..+.+... .+..++..+...+...|++++|...|+++. +.+...|..+...+...|++++|+..+++..... +.
T Consensus 158 ~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~ 235 (388)
T 1w3b_A 158 YLKAIETQP-NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PN 235 (388)
T ss_dssp HHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TT
T ss_pred HHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cC
Confidence 999887643 356788899999999999999999999986 5567789999999999999999999999998752 33
Q ss_pred ChhHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHhCC--CCCCHHHHHHHH
Q 007519 432 NSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQP-GPEHYVSMINLLGRAGKIKEAEEFVLRLP--FEPDHRIWGALL 508 (600)
Q Consensus 432 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~ 508 (600)
+..++..+..++...|++++|.+.++++.+. .| ++.++..++.+|.+.|++++|.+.++++. .+++..++..+.
T Consensus 236 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 312 (388)
T 1w3b_A 236 HAVVHGNLACVYYEQGLIDLAIDTYRRAIEL---QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLA 312 (388)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHH
Confidence 5678888999999999999999999999864 56 47789999999999999999999999875 445678888888
Q ss_pred HHHhhhhCCHHHHHHHHHHHHhhCCCCCCcHHHHhHHHHhhCCcHHHHHHHHHHhhc
Q 007519 509 GACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLK 565 (600)
Q Consensus 509 ~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 565 (600)
..+. ..|++++|+..++++++..|+++.++..++.++.+.|++++|.+.++.+.+.
T Consensus 313 ~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 368 (388)
T 1w3b_A 313 NIKR-EQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp HHHH-TTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred HHHH-HcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 8888 9999999999999999999999999999999999999999999988777653
No 5
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.95 E-value=1.1e-26 Score=232.08 Aligned_cols=184 Identities=15% Similarity=0.170 Sum_probs=173.6
Q ss_pred hhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhcccc---------hhhhHHHHHHHhhhcCCCchh
Q 007519 298 VAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATAN---------IDLGRQIHCVLMKTESESDLI 368 (600)
Q Consensus 298 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~---------~~~a~~~~~~~~~~~~~~~~~ 368 (600)
..++.+|.+|++.|++++|+++|++|.+.|+.||..||+.||.+|++.+. ++.|.++|+.|.+.|+.||..
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 45788999999999999999999999999999999999999999987554 678999999999999999999
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhcCC----CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhc
Q 007519 369 LENCLISMYAKCGVIDNAYNIFSNMV----SRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACS 444 (600)
Q Consensus 369 ~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~ 444 (600)
+|+++|.+|++.|++++|.++|++|. .||..+|+.+|.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|+
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~ 186 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSM 186 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence 99999999999999999999999986 78999999999999999999999999999999999999999999999999
Q ss_pred ccCchHHHHHHHHHHHhhcCCCCCcchHHHHHHHHhhc
Q 007519 445 HAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRA 482 (600)
Q Consensus 445 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 482 (600)
+.|++++|.+++++|.+. +..|+..+|+.++..|...
T Consensus 187 ~~g~~d~A~~ll~~Mr~~-g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 187 DTKNADKVYKTLQRLRDL-VRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HTTCHHHHHHHHHHHHHH-TSSBCHHHHHHHHHHHHSH
T ss_pred hCCCHHHHHHHHHHHHHh-CCCcCHHHHHHHHHHHhcC
Confidence 999999999999999987 9999999999999988753
No 6
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.93 E-value=2e-25 Score=223.08 Aligned_cols=198 Identities=9% Similarity=0.104 Sum_probs=171.8
Q ss_pred hHHHHHHHHHHHCCCCCCh-hHHHHHHHHHhcccchhhhHHHHHHHhhhcCCCchhHHHHHHHHHHhcCC---------h
Q 007519 314 VEATYLFMEMRAHGVPPLN-ATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGV---------I 383 (600)
Q Consensus 314 ~~a~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---------~ 383 (600)
..+..+.+++.+.++.+.+ ..++.+|.+|++.|++++|.++|+.|.+.|+.||..+|++||.+|++.+. +
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l 86 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGL 86 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHH
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchH
Confidence 3455666777777766554 46888999999999999999999999999999999999999999987665 6
Q ss_pred HHHHHHHhcCC----CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccCchHHHHHHHHHH
Q 007519 384 DNAYNIFSNMV----SRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAM 459 (600)
Q Consensus 384 ~~A~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 459 (600)
++|.++|++|. .||..+|+++|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|
T Consensus 87 ~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M 166 (501)
T 4g26_A 87 SRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHM 166 (501)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHH
Confidence 88999999986 78999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhCC---CCCCHHHHHHHHHHHh
Q 007519 460 FDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLP---FEPDHRIWGALLGACG 512 (600)
Q Consensus 460 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~p~~~~~~~l~~~~~ 512 (600)
.+. |+.||..+|++|+.+|++.|++++|.+++++|. ..|+..||+.++..+.
T Consensus 167 ~~~-G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~ 221 (501)
T 4g26_A 167 VES-EVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFK 221 (501)
T ss_dssp HHT-TCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHH
T ss_pred Hhc-CCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHh
Confidence 986 999999999999999999999999999999995 8899999999998876
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.92 E-value=4.9e-23 Score=210.99 Aligned_cols=221 Identities=11% Similarity=-0.067 Sum_probs=97.9
Q ss_pred HHHHHHHHhcccchhhhHHHHHHHhhhcCCCchhHHHHHHHHHHhcCChHHHHHHHhcCC---CCChhhHHHHHHHHHhc
Q 007519 335 FSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMV---SRDLVSWNSMVMGFSHH 411 (600)
Q Consensus 335 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~ 411 (600)
+..+...+...|+++.|...++.+.+.... ...+..+..++...|++++|...++++. +.+...+..+...+...
T Consensus 240 ~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 317 (514)
T 2gw1_A 240 LEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFIL 317 (514)
T ss_dssp HHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHh
Confidence 333334444444444444444444443322 3344444444444444444444444432 22334444444444444
Q ss_pred CChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCC-CcchHHHHHHHHhhcCChHHHHH
Q 007519 412 GLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQP-GPEHYVSMINLLGRAGKIKEAEE 490 (600)
Q Consensus 412 ~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~ 490 (600)
|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+. .| +...+..++..|.+.|++++|.+
T Consensus 318 ~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~la~~~~~~~~~~~A~~ 393 (514)
T 2gw1_A 318 QNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRK---FPEAPEVPNFFAEILTDKNDFDKALK 393 (514)
T ss_dssp TCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH---STTCSHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---cccCHHHHHHHHHHHHHCCCHHHHHH
Confidence 55555555554444431 222334444444444445555555555444432 22 23444444444555555555544
Q ss_pred HHHhCC----CCCC----HHHHHHHHHHHhhh---hCCHHHHHHHHHHHHhhCCCCCCcHHHHhHHHHhhCCcHHHHHHH
Q 007519 491 FVLRLP----FEPD----HRIWGALLGACGFC---EGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLR 559 (600)
Q Consensus 491 ~~~~~~----~~p~----~~~~~~l~~~~~~~---~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 559 (600)
.++++. ..++ ...+..+...+. . .|++++|+..++++++..|+++.++..++.++...|++++|...+
T Consensus 394 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 472 (514)
T 2gw1_A 394 QYDLAIELENKLDGIYVGIAPLVGKATLLT-RNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLF 472 (514)
T ss_dssp HHHHHHHHHHTSSSCSSCSHHHHHHHHHHH-TSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHhhhccchHHHHHHHHHHHHHHHh-hhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 444431 1111 113444444444 4 445555555555555544444444444555555555555555444
Q ss_pred HHH
Q 007519 560 MDM 562 (600)
Q Consensus 560 ~~~ 562 (600)
+..
T Consensus 473 ~~a 475 (514)
T 2gw1_A 473 EES 475 (514)
T ss_dssp HHH
T ss_pred HHH
Confidence 333
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.92 E-value=3e-23 Score=212.57 Aligned_cols=368 Identities=8% Similarity=-0.035 Sum_probs=305.5
Q ss_pred chhHHHHHHHHHhcCChhHHHHHHccCCC--CCcchHHHHHHHHHhcCChhHHHHHHHHHHhhhcCCCCCChhhHHHHHH
Q 007519 166 VVTWTSMISGYCRAGEVEEGYCLFRRMPR--KNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMIN 243 (600)
Q Consensus 166 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~ 243 (600)
...+......+.+.|++++|...|+++.+ |+..+|..+..++...|++++|+..++++.+. .+.+..++..+..
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~l~~ 81 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALEL----KPDYSKVLLRRAS 81 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH----CSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhcc----ChHHHHHHHHHHH
Confidence 45567788899999999999999999874 88889999999999999999999999999976 2345678999999
Q ss_pred HHHhcCChhhHHHHhcccCCCC----------------------------------------------------------
Q 007519 244 GYIRFGRLEEAQNLFDTVPVRD---------------------------------------------------------- 265 (600)
Q Consensus 244 ~~~~~~~~~~a~~~~~~~~~~~---------------------------------------------------------- 265 (600)
++...|++++|...|+.+...+
T Consensus 82 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (514)
T 2gw1_A 82 ANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSV 161 (514)
T ss_dssp HHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCH
T ss_pred HHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchh
Confidence 9999999999999998774111
Q ss_pred ------------------------chhHHHHHHHHHh---cCChHHHHHHHhhCCC----------------C-ChhhHH
Q 007519 266 ------------------------EISWTSMIDGYLS---VGQVSNAYYLFHNMPD----------------R-DAVAWT 301 (600)
Q Consensus 266 ------------------------~~~~~~l~~~~~~---~~~~~~A~~~~~~~~~----------------~-~~~~~~ 301 (600)
...+......+.. .|++++|+..|+++.. + +..++.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (514)
T 2gw1_A 162 TSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLE 241 (514)
T ss_dssp HHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHH
Confidence 2222333333443 8999999999987644 1 245788
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhcccchhhhHHHHHHHhhhcCCCchhHHHHHHHHHHhcC
Q 007519 302 AMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCG 381 (600)
Q Consensus 302 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 381 (600)
.+...+...|++++|+..|+++.+.. |+...+..+..++...|+++.|...++.+.+.... +..++..+...+...|
T Consensus 242 ~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~ 318 (514)
T 2gw1_A 242 HTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSN-NSSVYYHRGQMNFILQ 318 (514)
T ss_dssp HHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTT-CTHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcC-CHHHHHHHHHHHHHhC
Confidence 88999999999999999999999874 44778888888999999999999999998876543 5678889999999999
Q ss_pred ChHHHHHHHhcCC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccCchHHHHHHHHH
Q 007519 382 VIDNAYNIFSNMV---SRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNA 458 (600)
Q Consensus 382 ~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 458 (600)
++++|...++++. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...+++
T Consensus 319 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 397 (514)
T 2gw1_A 319 NYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDL 397 (514)
T ss_dssp CTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 9999999999875 5567889999999999999999999999998863 44567888888999999999999999999
Q ss_pred HHhhcCCCCC----cchHHHHHHHHhh---cCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHhhhhCCHHHHHHHHHHHH
Q 007519 459 MFDVYKIQPG----PEHYVSMINLLGR---AGKIKEAEEFVLRLP-FEP-DHRIWGALLGACGFCEGNAEIAEHAAKRLL 529 (600)
Q Consensus 459 ~~~~~~~~p~----~~~~~~l~~~~~~---~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~ 529 (600)
+.+...-.++ ...+..++..+.. .|++++|.+.++++. ..| +...+..+...+. ..|++++|+..+++++
T Consensus 398 a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~a~ 476 (514)
T 2gw1_A 398 AIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKL-QQEDIDEAITLFEESA 476 (514)
T ss_dssp HHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHH
T ss_pred HHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH-HhcCHHHHHHHHHHHH
Confidence 9875222222 3389999999999 999999999998874 334 5667788888888 9999999999999999
Q ss_pred hhCCCCCCcHHHH
Q 007519 530 ELDPLNAPAHVVL 542 (600)
Q Consensus 530 ~~~p~~~~~~~~l 542 (600)
++.|+++..+..+
T Consensus 477 ~~~~~~~~~~~~~ 489 (514)
T 2gw1_A 477 DLARTMEEKLQAI 489 (514)
T ss_dssp HHCSSHHHHHHHH
T ss_pred HhccccHHHHHHH
Confidence 9999877766655
No 9
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.92 E-value=3.1e-23 Score=213.72 Aligned_cols=426 Identities=12% Similarity=0.024 Sum_probs=286.4
Q ss_pred eHHHHHHHHHHCCChhHHHHHhhcCCC---CCcccHHHHHHHHHhcCCHhHHHHHHHhccc---CCchhHHHHHHHHHhc
Q 007519 106 SWNSMVVGLIRNGELNEARKVFNSMPI---KNVISWNAMIAGYVECCMMGEAIVLFEEMEE---RNVVTWTSMISGYCRA 179 (600)
Q Consensus 106 ~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~ 179 (600)
.+..+...+.+.|++++|++.|+++.. .++..+..+..++...|++++|.+.++++.+ .+..++..+..++...
T Consensus 27 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 106 (537)
T 3fp2_A 27 QLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESL 106 (537)
T ss_dssp HHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHc
Confidence 445555566666666666666666543 3445566666666666666666666666652 2345666677777777
Q ss_pred CChhHHHHHHccCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHhcCChhhHHHHhc
Q 007519 180 GEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFD 259 (600)
Q Consensus 180 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 259 (600)
|++++|...|+.+. .++......+..+...+....|...++++... ..+..+........+..+....+.+.+...+.
T Consensus 107 g~~~~A~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (537)
T 3fp2_A 107 GNFTDAMFDLSVLS-LNGDFDGASIEPMLERNLNKQAMKVLNENLSK-DEGRGSQVLPSNTSLASFFGIFDSHLEVSSVN 184 (537)
T ss_dssp TCHHHHHHHHHHHC------------CHHHHHHHHHHHHHHHHHCC--------CCCCCHHHHHHHHHTSCHHHHHHTSC
T ss_pred CCHHHHHHHHHHHh-cCCCCChHHHHHHHHHHHHHHHHHHHHHHHHh-CccccccccchHhHHHHHHHhcChHHHHHHHh
Confidence 77777777775332 12222222334445555566777777777653 11111111122333445556667777777777
Q ss_pred ccCCCCch---hHHHHHHHHHh--------cCChHHHHHHHhhCCC--CC--------hhhHHHHHHHHHhCCChhHHHH
Q 007519 260 TVPVRDEI---SWTSMIDGYLS--------VGQVSNAYYLFHNMPD--RD--------AVAWTAMISGLVQNELFVEATY 318 (600)
Q Consensus 260 ~~~~~~~~---~~~~l~~~~~~--------~~~~~~A~~~~~~~~~--~~--------~~~~~~li~~~~~~g~~~~a~~ 318 (600)
.....++. ....+...+.. .|++++|+.+|+++.+ |+ ..++..+...+...|++++|+.
T Consensus 185 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~ 264 (537)
T 3fp2_A 185 TSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQV 264 (537)
T ss_dssp CCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 66644433 33333333322 2478888888887765 32 2246667778888999999999
Q ss_pred HHHHHHHCCCCCChhHHHHHHHHHhcccchhhhHHHHHHHhhhcCCCchhHHHHHHHHHHhcCChHHHHHHHhcCC---C
Q 007519 319 LFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMV---S 395 (600)
Q Consensus 319 ~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~ 395 (600)
.|++..+. .|+...+..+...+...|+++.|...+..+.+.... +..++..+...+...|++++|...|+++. +
T Consensus 265 ~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~ 341 (537)
T 3fp2_A 265 LLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPE-YPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNP 341 (537)
T ss_dssp HHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Confidence 99999886 566777888888899999999999999988876543 56778888899999999999999998876 4
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCCC----cch
Q 007519 396 RDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPG----PEH 471 (600)
Q Consensus 396 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~ 471 (600)
.+...|..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.+.++++.+...-.++ ...
T Consensus 342 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 420 (537)
T 3fp2_A 342 ENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGP 420 (537)
T ss_dssp TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHH
Confidence 566788888999999999999999999988763 445567788888889999999999999988765211111 122
Q ss_pred HHHHHHHHhhc----------CChHHHHHHHHhCC-CCC-CHHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCCCc
Q 007519 472 YVSMINLLGRA----------GKIKEAEEFVLRLP-FEP-DHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPA 538 (600)
Q Consensus 472 ~~~l~~~~~~~----------g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 538 (600)
+..++.++... |++++|...++++. ..| +...+..+...+. ..|++++|+..+++++++.|+++..
T Consensus 421 ~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~~~~~~~ 498 (537)
T 3fp2_A 421 LIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKL-QMEKIDEAIELFEDSAILARTMDEK 498 (537)
T ss_dssp HHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHC--CHHH
T ss_pred HHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HhccHHHHHHHHHHHHHhCCCcHHH
Confidence 34455677777 99999999998864 334 5667777777888 8999999999999999999865544
No 10
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.91 E-value=1.2e-22 Score=209.40 Aligned_cols=415 Identities=10% Similarity=0.040 Sum_probs=316.0
Q ss_pred cccHHHHHHHHHhcCCHhHHHHHHHhccc---CCchhHHHHHHHHHhcCChhHHHHHHccCCC---CCcchHHHHHHHHH
Q 007519 135 VISWNAMIAGYVECCMMGEAIVLFEEMEE---RNVVTWTSMISGYCRAGEVEEGYCLFRRMPR---KNVVSWTAMIGGFA 208 (600)
Q Consensus 135 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~ 208 (600)
...+..+...+.+.|++++|...|+++.+ .+..++..+..+|.+.|++++|.+.|+++.+ .+..++..+...+.
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 104 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANE 104 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence 45677788889999999999999998874 4567888888999999999999999988764 35667888889999
Q ss_pred hcCChhHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHhcCChhhHHHHhcccCCC------CchhHHHHHHHHHhcCCh
Q 007519 209 WNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVR------DEISWTSMIDGYLSVGQV 282 (600)
Q Consensus 209 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~l~~~~~~~~~~ 282 (600)
..|++++|+..|+ .... .|+.. ...+..+...+....+...++.+... ........+..+....+.
T Consensus 105 ~~g~~~~A~~~~~-~~~~-----~~~~~--~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (537)
T 3fp2_A 105 SLGNFTDAMFDLS-VLSL-----NGDFD--GASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDS 176 (537)
T ss_dssp HHTCHHHHHHHHH-HHC------------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCH
T ss_pred HcCCHHHHHHHHH-HHhc-----CCCCC--hHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcCh
Confidence 9999999999996 3322 33322 12233444555566777777777532 112234455666777788
Q ss_pred HHHHHHHhhCCCCChh---hHHHHHHHHHhC--------CChhHHHHHHHHHHHCCCCCCh--------hHHHHHHHHHh
Q 007519 283 SNAYYLFHNMPDRDAV---AWTAMISGLVQN--------ELFVEATYLFMEMRAHGVPPLN--------ATFSVLFGAAG 343 (600)
Q Consensus 283 ~~A~~~~~~~~~~~~~---~~~~li~~~~~~--------g~~~~a~~~~~~m~~~g~~p~~--------~~~~~l~~~~~ 343 (600)
+.+...+......+.. ....+...+... |++++|+.+|+++.+. .|+. .++..+...+.
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~~~~~g~~~~ 254 (537)
T 3fp2_A 177 HLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSA--NTVDDPLRENAALALCYTGIFHF 254 (537)
T ss_dssp HHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH--CCCcchhhHHHHHHHHHHHHHHH
Confidence 8887777776664433 334444333332 4789999999999875 4442 24556667788
Q ss_pred cccchhhhHHHHHHHhhhcCCCchhHHHHHHHHHHhcCChHHHHHHHhcCC---CCChhhHHHHHHHHHhcCChHHHHHH
Q 007519 344 ATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMV---SRDLVSWNSMVMGFSHHGLANETLKV 420 (600)
Q Consensus 344 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~ 420 (600)
..|+++.|...+..+.+.... ...+..+...+...|++++|...++++. +.+..+|..+...+...|++++|+..
T Consensus 255 ~~~~~~~A~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 332 (537)
T 3fp2_A 255 LKNNLLDAQVLLQESINLHPT--PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKED 332 (537)
T ss_dssp HTTCHHHHHHHHHHHHHHCCC--HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hcccHHHHHHHHHHHHhcCCC--chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHH
Confidence 899999999999998887544 7788889999999999999999999876 55778999999999999999999999
Q ss_pred HHHHHHcCCCCChhHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHhCC---
Q 007519 421 FESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQP-GPEHYVSMINLLGRAGKIKEAEEFVLRLP--- 496 (600)
Q Consensus 421 ~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--- 496 (600)
++++.+.. +.+...+..+..++...|++++|.+.++++.+. .| +...+..++..+...|++++|.+.++++.
T Consensus 333 ~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 408 (537)
T 3fp2_A 333 FQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLK---FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLE 408 (537)
T ss_dssp HHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC
Confidence 99999863 345677888889999999999999999999875 45 57789999999999999999999998863
Q ss_pred -CCC----CHHHHHHHHHHHhhhh----------CCHHHHHHHHHHHHhhCCCCCCcHHHHhHHHHhhCCcHHHHHHHHH
Q 007519 497 -FEP----DHRIWGALLGACGFCE----------GNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMD 561 (600)
Q Consensus 497 -~~p----~~~~~~~l~~~~~~~~----------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 561 (600)
..+ ....+......+. .. |++++|+..++++++..|+++.++..++.+|...|++++|.+.++.
T Consensus 409 ~~~~~~~~~~~~~~~~a~~~~-~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 487 (537)
T 3fp2_A 409 EVQEKIHVGIGPLIGKATILA-RQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFED 487 (537)
T ss_dssp HHCSSCSSTTHHHHHHHHHHH-HHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CcchhhHHHHHHHHHHHHHHH-HHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 111 1222334444555 66 9999999999999999999999999999999999999999998877
Q ss_pred HhhcC
Q 007519 562 MGLKG 566 (600)
Q Consensus 562 ~~~~~ 566 (600)
..+..
T Consensus 488 al~~~ 492 (537)
T 3fp2_A 488 SAILA 492 (537)
T ss_dssp HHHHC
T ss_pred HHHhC
Confidence 66543
No 11
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.91 E-value=6.6e-22 Score=198.90 Aligned_cols=315 Identities=11% Similarity=0.021 Sum_probs=210.1
Q ss_pred cchHHHHHHHHHhcCChhHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHhcCChhhHHHHhcccC---CCCchhHHHHH
Q 007519 197 VVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVP---VRDEISWTSMI 273 (600)
Q Consensus 197 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~ 273 (600)
...+..+...+.+.|++++|+.+|+++.+. .+.+..++..+..++...|++++|...++.+. +.+..++..++
T Consensus 26 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~----~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 101 (450)
T 2y4t_A 26 VEKHLELGKKLLAAGQLADALSQFHAAVDG----DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRG 101 (450)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----CCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 345666777777777777777777777654 23345666667777777777777777766654 33344455555
Q ss_pred HHHHhcCChHHHHHHHhhCCC--CC-h---hhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhcccc
Q 007519 274 DGYLSVGQVSNAYYLFHNMPD--RD-A---VAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATAN 347 (600)
Q Consensus 274 ~~~~~~~~~~~A~~~~~~~~~--~~-~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~ 347 (600)
.+|.+.|++++|...|+++.. |+ . ..+..++..+... .+..+...+...|+
T Consensus 102 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------------------~~~~~a~~~~~~~~ 158 (450)
T 2y4t_A 102 HLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQ-----------------------RLRSQALNAFGSGD 158 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHTC
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHcCC
Confidence 555555555555555554433 11 1 3333332220000 01111223455566
Q ss_pred hhhhHHHHHHHhhhcCCCchhHHHHHHHHHHhcCChHHHHHHHhcCC---CCChhhHHHHHHHHHhcCChHHHHHHHHHH
Q 007519 348 IDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMV---SRDLVSWNSMVMGFSHHGLANETLKVFESM 424 (600)
Q Consensus 348 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m 424 (600)
++.|...++.+.+... .+..++..+..+|...|++++|...|+++. +.+..+|..++..+...|++++|+..|+++
T Consensus 159 ~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 237 (450)
T 2y4t_A 159 YTAAIAFLDKILEVCV-WDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVREC 237 (450)
T ss_dssp HHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 6666666665555432 245566677777777777777777777765 456777888888888888888888888888
Q ss_pred HHcCCCCCh-hHHHHH------------HHHhcccCchHHHHHHHHHHHhhcCCCCC-----cchHHHHHHHHhhcCChH
Q 007519 425 LESGTHPNS-VTFLGI------------LSACSHAGLVSRGWELFNAMFDVYKIQPG-----PEHYVSMINLLGRAGKIK 486 (600)
Q Consensus 425 ~~~~~~p~~-~~~~~l------------~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~ 486 (600)
... .|+. ..+..+ ...+...|++++|...|+++.+. .|+ ...+..++.++.+.|+++
T Consensus 238 ~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~~~~~l~~~~~~~g~~~ 312 (450)
T 2y4t_A 238 LKL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT---EPSIAEYTVRSKERICHCFSKDEKPV 312 (450)
T ss_dssp HHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHTTTCHH
T ss_pred HHh--CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHHHHCCCHH
Confidence 764 4443 333333 67788889999999999998864 454 347788889999999999
Q ss_pred HHHHHHHhCC-CCC-CHHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCCCcHHHHhHH
Q 007519 487 EAEEFVLRLP-FEP-DHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNI 545 (600)
Q Consensus 487 ~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 545 (600)
+|.+.++++. ..| +...|..+..+|. ..|++++|+..+++++++.|+++.++..++.+
T Consensus 313 ~A~~~~~~a~~~~p~~~~~~~~l~~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 372 (450)
T 2y4t_A 313 EAIRVCSEVLQMEPDNVNALKDRAEAYL-IEEMYDEAIQDYETAQEHNENDQQIREGLEKA 372 (450)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHhCcchHHHHHHHHHH
Confidence 9999998864 344 5778888888888 89999999999999999999888888888843
No 12
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.90 E-value=4.6e-21 Score=192.71 Aligned_cols=360 Identities=10% Similarity=0.024 Sum_probs=253.6
Q ss_pred CCchhHHHHHHHHHhcCChhHHHHHHccCCC---CCcchHHHHHHHHHhcCChhHHHHHHHHHHhhhcCCCCCChhhHHH
Q 007519 164 RNVVTWTSMISGYCRAGEVEEGYCLFRRMPR---KNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNS 240 (600)
Q Consensus 164 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 240 (600)
.+...+..++..+.+.|++++|..+|+++.+ .+..+|..+..++...|++++|+..|+++.+. .+.+..++..
T Consensus 24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~ 99 (450)
T 2y4t_A 24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQL----KMDFTAARLQ 99 (450)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc----CCCcHHHHHH
Confidence 3467788899999999999999999998764 46778999999999999999999999999986 2335778899
Q ss_pred HHHHHHhcCChhhHHHHhcccCCCC---c---hhHHHHHHHHHhcCChHHHHHHHhhCCCCChhhHHHHHHHHHhCCChh
Q 007519 241 MINGYIRFGRLEEAQNLFDTVPVRD---E---ISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFV 314 (600)
Q Consensus 241 l~~~~~~~~~~~~a~~~~~~~~~~~---~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 314 (600)
+..+|...|++++|...|+.+...+ . ..+..++..+... .+..+...+...|+++
T Consensus 100 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------------------~~~~~a~~~~~~~~~~ 160 (450)
T 2y4t_A 100 RGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQ-------------------RLRSQALNAFGSGDYT 160 (450)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHTCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHH-------------------HHHHHHHHHHHcCCHH
Confidence 9999999999999999999987433 3 5555555443221 1223344455566666
Q ss_pred HHHHHHHHHHHCCCCCChhHHHHHHHHHhcccchhhhHHHHHHHhhhcCCCchhHHHHHHHHHHhcCChHHHHHHHhcCC
Q 007519 315 EATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMV 394 (600)
Q Consensus 315 ~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 394 (600)
+|+..|+++.+.. +.+...+..+..++...|+++.|...+..+.+... .+..++..+..+|...|++++|...|+++.
T Consensus 161 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 238 (450)
T 2y4t_A 161 AAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKN-DNTEAFYKISTLYYQLGDHELSLSEVRECL 238 (450)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 6666666666542 33445566666666666666666666666655432 245666667777777777777777777664
Q ss_pred ---CCChhhHHHH------------HHHHHhcCChHHHHHHHHHHHHcCCCCC-----hhHHHHHHHHhcccCchHHHHH
Q 007519 395 ---SRDLVSWNSM------------VMGFSHHGLANETLKVFESMLESGTHPN-----SVTFLGILSACSHAGLVSRGWE 454 (600)
Q Consensus 395 ---~~~~~~~~~l------------~~~~~~~~~~~~a~~~~~~m~~~~~~p~-----~~~~~~l~~~~~~~g~~~~a~~ 454 (600)
+.+...+..+ +..+...|++++|+.+|+++.+. .|+ ...+..+..++.+.|++++|..
T Consensus 239 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 316 (450)
T 2y4t_A 239 KLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIR 316 (450)
T ss_dssp HHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred HhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 3333444433 77788889999999999988874 454 2366777788888999999999
Q ss_pred HHHHHHhhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHhCC-CCCCH-HHHHHHHHH------------HhhhhC---
Q 007519 455 LFNAMFDVYKIQP-GPEHYVSMINLLGRAGKIKEAEEFVLRLP-FEPDH-RIWGALLGA------------CGFCEG--- 516 (600)
Q Consensus 455 ~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~-~~~~~l~~~------------~~~~~g--- 516 (600)
.++++.+. .| +...+..++.+|...|++++|.+.++++. ..|+. ..+..+..+ +. ..|
T Consensus 317 ~~~~a~~~---~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~-~lg~~~ 392 (450)
T 2y4t_A 317 VCSEVLQM---EPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYK-ILGVKR 392 (450)
T ss_dssp HHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGG-GSCSST
T ss_pred HHHHHHHh---CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHH-HhCCCc
Confidence 99988764 45 57788889999999999999999988863 55653 444444422 22 333
Q ss_pred --CHHHHHHHHHH-HHhhCCCCCC----------cHHHHhHHHHhhCCcHH
Q 007519 517 --NAEIAEHAAKR-LLELDPLNAP----------AHVVLCNIYAASGRHVE 554 (600)
Q Consensus 517 --~~~~a~~~~~~-~~~~~p~~~~----------~~~~l~~~~~~~g~~~~ 554 (600)
+.+++.+.+++ +++..|++.. .+..+..+|...|+.++
T Consensus 393 ~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~ 443 (450)
T 2y4t_A 393 NAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEM 443 (450)
T ss_dssp TCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGG
T ss_pred cCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHH
Confidence 55677888886 7777775432 33445555555555443
No 13
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.85 E-value=1.1e-16 Score=169.35 Aligned_cols=370 Identities=12% Similarity=0.103 Sum_probs=230.4
Q ss_pred chhHHHHHHHhcCChhhHHHHhccCCC-CCc-----chHHHH---------------------------HHHHHcCCChh
Q 007519 13 HLTSSITKYSKRGFIDEAKALFQLMPQ-RNV-----VSYNAM---------------------------LSGFLQNGRLS 59 (600)
Q Consensus 13 ~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~-----~~~~~l---------------------------~~~~~~~~~~~ 59 (600)
-....+++|+..|.+.+|+++++++.- |+. ..-+.| ...+...|.++
T Consensus 987 eVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIkaD~~Rv~eyI~kLd~~d~~eIA~Iai~lglyE 1066 (1630)
T 1xi4_A 987 EVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIANIAISNELFE 1066 (1630)
T ss_pred HhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHhChhhHHHHHHHhhhccHHHHHHHHHhCCCHH
Confidence 345678899999999999999999863 331 122222 34455566667
Q ss_pred HHHHHhhhcCCCChhhHHHHHHHHHhcCChHHHHHHhhcCCCCCceeHHHHHHHHHHCCChhHHHHHhhcCCCCCcccHH
Q 007519 60 EARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWN 139 (600)
Q Consensus 60 ~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 139 (600)
+|..+|++... .....+.++. ..+++++|.++.++.. ++.+|..+..++...|++++|++.|.+. .|...|.
T Consensus 1067 EAf~IYkKa~~-~~~A~~VLie---~i~nldrAiE~Aervn--~p~vWsqLAKAql~~G~~kEAIdsYiKA--dD~say~ 1138 (1630)
T 1xi4_A 1067 EAFAIFRKFDV-NTSAVQVLIE---HIGNLDRAYEFAERCN--EPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYM 1138 (1630)
T ss_pred HHHHHHHHcCC-HHHHHHHHHH---HHhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCHHHHHHHHHhc--CChHHHH
Confidence 77777766542 1111122221 5566777777766553 3456777777777777777777777654 5666677
Q ss_pred HHHHHHHhcCCHhHHHHHHHhccc--CCchhHHHHHHHHHhcCChhHHHHHHccCCCCCcchHHHHHHHHHhcCChhHHH
Q 007519 140 AMIAGYVECCMMGEAIVLFEEMEE--RNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESL 217 (600)
Q Consensus 140 ~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 217 (600)
.++.++.+.|++++|.+.|....+ +++...+.++.+|++.++++....+. ..++...|..+...|...|++++|.
T Consensus 1139 eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele~fI---~~~n~ad~~~iGd~le~eg~YeeA~ 1215 (1630)
T 1xi4_A 1139 EVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFI---NGPNNAHIQQVGDRCYDEKMYDAAK 1215 (1630)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHHHHH---hCCCHHHHHHHHHHHHhcCCHHHHH
Confidence 777777777777777777766552 33334445777777777777544332 3345556666777777777777777
Q ss_pred HHHHHHHhhhcCCCCCChhhHHHHHHHHHhcCChhhHHHHhcccCCCCchhHHHHHHHHHhcCChHHHHHHHhhCCCCCh
Q 007519 218 LLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDA 297 (600)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 297 (600)
.+|... ..|..+..++.+.|++++|.+.+++. .++.+|..+..+|...|++..|...... ...+.
T Consensus 1216 ~~Y~kA------------~ny~rLA~tLvkLge~q~AIEaarKA--~n~~aWkev~~acve~~Ef~LA~~cgl~-Iiv~~ 1280 (1630)
T 1xi4_A 1216 LLYNNV------------SNFGRLASTLVHLGEYQAAVDGARKA--NSTRTWKEVCFACVDGKEFRLAQMCGLH-IVVHA 1280 (1630)
T ss_pred HHHHhh------------hHHHHHHHHHHHhCCHHHHHHHHHHh--CCHHHHHHHHHHHhhhhHHHHHHHHHHh-hhcCH
Confidence 777664 25777777777777777777777766 3456777777777777777777766654 22345
Q ss_pred hhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCh-hHHHHHHHHHhc--ccchhhhHHHHHHHhhhcCC------Cchh
Q 007519 298 VAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLN-ATFSVLFGAAGA--TANIDLGRQIHCVLMKTESE------SDLI 368 (600)
Q Consensus 298 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~------~~~~ 368 (600)
..+..++..|.+.|.+++|+.+++..... .|.. ..|+-+...+++ .++..++.+.|... .+++ -+..
T Consensus 1281 deLeeli~yYe~~G~feEAI~LlE~aL~L--eraH~gmftELaiLyaKy~peklmEhlk~f~~r--ini~k~~r~~e~~~ 1356 (1630)
T 1xi4_A 1281 DELEELINYYQDRGYFEELITMLEAALGL--ERAHMGMFTELAILYSKFKPQKMREHLELFWSR--VNIPKVLRAAEQAH 1356 (1630)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhcc--ChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHh--cccchHhHHHHHHH
Confidence 55667788888888888888888766643 3322 234444444433 33344444433321 1111 1456
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhcC-------------C--CCChhhHHHHHHHHHhcC
Q 007519 369 LENCLISMYAKCGVIDNAYNIFSNM-------------V--SRDLVSWNSMVMGFSHHG 412 (600)
Q Consensus 369 ~~~~l~~~~~~~~~~~~A~~~~~~~-------------~--~~~~~~~~~l~~~~~~~~ 412 (600)
.|..++..|.+.|+++.|..+.-+- . ..|+..|...+..|...+
T Consensus 1357 lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~kv~n~elyykai~Fyl~~~ 1415 (1630)
T 1xi4_A 1357 LWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEFK 1415 (1630)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhcccccHHHHHHHHHHHHhhC
Confidence 6777888888888888887332221 1 335566666666665444
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.85 E-value=5.2e-19 Score=171.77 Aligned_cols=319 Identities=12% Similarity=0.014 Sum_probs=198.2
Q ss_pred cchHHHHHHHHHhcCChhHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHhcCChhhHHHHhcccC---CCCchhHHHHH
Q 007519 197 VVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVP---VRDEISWTSMI 273 (600)
Q Consensus 197 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~ 273 (600)
+..+..+...+...|++++|+..|+++.+. .+.+..++..+..++...|++++|...++.+. +.+...+..+.
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~----~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 78 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDG----DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRG 78 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh----CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHH
Confidence 456777788888888888888888888875 23346677777778888888888888877765 33445555666
Q ss_pred HHHHhcCChHHHHHHHhhCCC--C----ChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhcccc
Q 007519 274 DGYLSVGQVSNAYYLFHNMPD--R----DAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATAN 347 (600)
Q Consensus 274 ~~~~~~~~~~~A~~~~~~~~~--~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~ 347 (600)
..+...|++++|...|+++.. | +...+..+...+. ...+..+...+...|+
T Consensus 79 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~ 135 (359)
T 3ieg_A 79 HLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGAD 135 (359)
T ss_dssp HHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTC
T ss_pred HHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccC
Confidence 666666666666666655433 2 1112222210000 0001111234444455
Q ss_pred hhhhHHHHHHHhhhcCCCchhHHHHHHHHHHhcCChHHHHHHHhcCC---CCChhhHHHHHHHHHhcCChHHHHHHHHHH
Q 007519 348 IDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMV---SRDLVSWNSMVMGFSHHGLANETLKVFESM 424 (600)
Q Consensus 348 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m 424 (600)
++.|...+..+.+... .+...+..+...+...|++++|...++++. +.+...+..+...+...|++++|...+++.
T Consensus 136 ~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 214 (359)
T 3ieg_A 136 YTAAITFLDKILEVCV-WDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVREC 214 (359)
T ss_dssp HHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCC-CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5555555554444322 234455566666666677777776666654 345566777777777777777777777777
Q ss_pred HHcCCCCCh-hHHH------------HHHHHhcccCchHHHHHHHHHHHhhcCCCCC-c----chHHHHHHHHhhcCChH
Q 007519 425 LESGTHPNS-VTFL------------GILSACSHAGLVSRGWELFNAMFDVYKIQPG-P----EHYVSMINLLGRAGKIK 486 (600)
Q Consensus 425 ~~~~~~p~~-~~~~------------~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~----~~~~~l~~~~~~~g~~~ 486 (600)
.+. .|+. ..+. .+...+...|++++|...++++.+. .|+ . ..+..++.++...|+++
T Consensus 215 ~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~la~~~~~~~~~~ 289 (359)
T 3ieg_A 215 LKL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT---EPSVAEYTVRSKERICHCFSKDEKPV 289 (359)
T ss_dssp HHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHHTTCHH
T ss_pred Hhh--CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCchHHHHHHHHHHHHHHHHccCHH
Confidence 664 2332 2222 2244567778888888888887764 343 2 23455777788888888
Q ss_pred HHHHHHHhCC-CCC-CHHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCCCcHHHHhHHHHhh
Q 007519 487 EAEEFVLRLP-FEP-DHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAAS 549 (600)
Q Consensus 487 ~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 549 (600)
+|.+.+++.. ..| +...+..+...+. ..|++++|+..++++++++|+++.+...+..+....
T Consensus 290 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~ 353 (359)
T 3ieg_A 290 EAIRICSEVLQMEPDNVNALKDRAEAYL-IEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLL 353 (359)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Confidence 8888887764 334 5566777777777 788888888888888888887777777776665443
No 15
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.85 E-value=7.8e-17 Score=170.57 Aligned_cols=466 Identities=12% Similarity=0.077 Sum_probs=334.9
Q ss_pred CCcchHHHHHHHHHcCCC-hhHHHHHhhhcCCCChhhHHHHHHHHHhcCChHHHHHHhhcCCC--------CCceeHHHH
Q 007519 40 RNVVSYNAMLSGFLQNGR-LSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPE--------RNVVSWNSM 110 (600)
Q Consensus 40 ~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~l 110 (600)
.++.++|+|+..|...++ ++.-+. .|..-=+.++.-||...|+.-|.-.|++-.- ..-..|-.+
T Consensus 871 ~~~~~hnalakiyid~n~npe~fL~-------~n~~yd~~~vgkyce~rDp~la~iay~~g~~d~eli~vt~~n~l~k~~ 943 (1630)
T 1xi4_A 871 EEPATHNALAKIYIDSNNNPERFLR-------ENPYYDSRVVGKYCEKRDPHLACVAYERGQCDLELINVCNENSLFKSL 943 (1630)
T ss_pred CCHHHHHHHHHHHhccCCCHHHHhh-------ccCcccHHHHHHHHHhcCcchHHHHhcccCCcHHHHHHHhcchhHHHH
Confidence 466677777777765443 332211 2222223444445555555555555554221 111233444
Q ss_pred HHHHHHCCChhHHHHHhhcCC-----------------CCCcccHHHHHHHHHhcCCHhHHHHHHHhcc-cCC-----ch
Q 007519 111 VVGLIRNGELNEARKVFNSMP-----------------IKNVISWNAMIAGYVECCMMGEAIVLFEEME-ERN-----VV 167 (600)
Q Consensus 111 ~~~~~~~~~~~~a~~~~~~~~-----------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~-----~~ 167 (600)
++.+.+..+.+---.++.+-. ..++.--...+++|...|.+.+|.++++++. +|+ ..
T Consensus 944 arylv~r~d~~lW~~vl~~~n~~RR~Lidqv~a~aL~e~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~ 1023 (1630)
T 1xi4_A 944 SRYLVRRKDPELWGSVLLESNPYRRPLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRN 1023 (1630)
T ss_pred HHHHHHhcCHHHHHHHhcCCcHHHHHHHHHHHHhhcccccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHH
Confidence 444444444443333331110 1455566778889999999999999999987 332 24
Q ss_pred hHHHHHHHHHhcCChhHHHHHHccCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHh
Q 007519 168 TWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIR 247 (600)
Q Consensus 168 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 247 (600)
..+.++....+. +..+..++.++...-+ ...+...+...|.+++|..+|++... .....+.+ +..
T Consensus 1024 LqnlLi~tAIka-D~~Rv~eyI~kLd~~d---~~eIA~Iai~lglyEEAf~IYkKa~~--------~~~A~~VL---ie~ 1088 (1630)
T 1xi4_A 1024 LQNLLILTAIKA-DRTRVMEYINRLDNYD---APDIANIAISNELFEEAFAIFRKFDV--------NTSAVQVL---IEH 1088 (1630)
T ss_pred HHHHHHHHHHHh-ChhhHHHHHHHhhhcc---HHHHHHHHHhCCCHHHHHHHHHHcCC--------HHHHHHHH---HHH
Confidence 555666666665 5677777776665333 45578889999999999999999631 12222233 237
Q ss_pred cCChhhHHHHhcccCCCCchhHHHHHHHHHhcCChHHHHHHHhhCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCC
Q 007519 248 FGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHG 327 (600)
Q Consensus 248 ~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 327 (600)
.+++++|.++.+++ .++.+|..+..++...|++++|+..|.+. .|...|..++.++.+.|++++|++.|...++..
T Consensus 1089 i~nldrAiE~Aerv--n~p~vWsqLAKAql~~G~~kEAIdsYiKA--dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~ 1164 (1630)
T 1xi4_A 1089 IGNLDRAYEFAERC--NEPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA 1164 (1630)
T ss_pred HhhHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCHHHHHHHHHhc--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc
Confidence 78999999999877 45778999999999999999999999775 677788899999999999999999999887754
Q ss_pred CCCChhHHHHHHHHHhcccchhhhHHHHHHHhhhcCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHH
Q 007519 328 VPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMG 407 (600)
Q Consensus 328 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~ 407 (600)
++....+.+..+|++.++++....+.. .++...+..+.+.|...|++++|..+|... ..|..+...
T Consensus 1165 --~e~~Idt~LafaYAKl~rleele~fI~-------~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA-----~ny~rLA~t 1230 (1630)
T 1xi4_A 1165 --RESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLAST 1230 (1630)
T ss_pred --ccccccHHHHHHHHhhcCHHHHHHHHh-------CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh-----hHHHHHHHH
Confidence 444444468889999988886554431 334556667999999999999999999985 589999999
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCCCcchHHHHHHHHhhcCChHH
Q 007519 408 FSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKE 487 (600)
Q Consensus 408 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 487 (600)
+.+.|++++|++.+++. .+..+|..+-.+|...|++..|..+... +..++..+..++..|.+.|.+++
T Consensus 1231 LvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~------Iiv~~deLeeli~yYe~~G~feE 1298 (1630)
T 1xi4_A 1231 LVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH------IVVHADELEELINYYQDRGYFEE 1298 (1630)
T ss_pred HHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHh------hhcCHHHHHHHHHHHHHcCCHHH
Confidence 99999999999999976 3558888889999999999999887653 23456678899999999999999
Q ss_pred HHHHHHhCC-CCCCH-HHHHHHHHHHh-hhhCCHHHHHHHHHHHHhhCC-----CCCCcHHHHhHHHHhhCCcHHHHH
Q 007519 488 AEEFVLRLP-FEPDH-RIWGALLGACG-FCEGNAEIAEHAAKRLLELDP-----LNAPAHVVLCNIYAASGRHVEEHK 557 (600)
Q Consensus 488 A~~~~~~~~-~~p~~-~~~~~l~~~~~-~~~g~~~~a~~~~~~~~~~~p-----~~~~~~~~l~~~~~~~g~~~~A~~ 557 (600)
|+.+++... ..|.. ..|..+...+. ++.++..++++.|..-..+.| .++..|..+...|.+.|+++.|..
T Consensus 1299 AI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1299 LITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred HHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 999997753 44433 34544444433 255778888888887777666 678889999999999999999985
No 16
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.83 E-value=4.2e-18 Score=165.36 Aligned_cols=301 Identities=13% Similarity=0.047 Sum_probs=224.6
Q ss_pred hhhHHHHHHHHHhcCChhhHHHHhcccC---CCCchhHHHHHHHHHhcCChHHHHHHHhhCCC---CChhhHHHHHHHHH
Q 007519 235 VQSCNSMINGYIRFGRLEEAQNLFDTVP---VRDEISWTSMIDGYLSVGQVSNAYYLFHNMPD---RDAVAWTAMISGLV 308 (600)
Q Consensus 235 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~ 308 (600)
...+..+...+...|++++|...|+.+. +.++.++..+...+...|++++|+..|+++.. .+...+..+...+.
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 82 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLL 82 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHH
Confidence 4556667777777777777777777665 44556666777777777777777777766543 24456666777777
Q ss_pred hCCChhHHHHHHHHHHHCCCCC---Chh-HHHHHHHHHhcccchhhhHHHHHHHhhhcCCCchhHHHHHHHHHHhcCChH
Q 007519 309 QNELFVEATYLFMEMRAHGVPP---LNA-TFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVID 384 (600)
Q Consensus 309 ~~g~~~~a~~~~~~m~~~g~~p---~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 384 (600)
..|++++|+..|++..+. .| +.. .+..+.... . ...+..+...+...|+++
T Consensus 83 ~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~-------~----------------~~~~~~~a~~~~~~~~~~ 137 (359)
T 3ieg_A 83 KQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKAD-------E----------------MQRLRSQALDAFDGADYT 137 (359)
T ss_dssp HHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHH-------H----------------HHHHHHHHHHHHHTTCHH
T ss_pred HcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHH-------H----------------HHHHHHHHHHHHHccCHH
Confidence 777777777777776654 34 221 111111110 0 111233467888999999
Q ss_pred HHHHHHhcCC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccCchHHHHHHHHHHHh
Q 007519 385 NAYNIFSNMV---SRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFD 461 (600)
Q Consensus 385 ~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 461 (600)
+|...++++. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+
T Consensus 138 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 216 (359)
T 3ieg_A 138 AAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLK 216 (359)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 9999999876 5677889999999999999999999999999753 55667888888999999999999999999987
Q ss_pred hcCCCCC-cchHH------------HHHHHHhhcCChHHHHHHHHhCC-CCCCHH-----HHHHHHHHHhhhhCCHHHHH
Q 007519 462 VYKIQPG-PEHYV------------SMINLLGRAGKIKEAEEFVLRLP-FEPDHR-----IWGALLGACGFCEGNAEIAE 522 (600)
Q Consensus 462 ~~~~~p~-~~~~~------------~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~-----~~~~l~~~~~~~~g~~~~a~ 522 (600)
. .|+ ...+. .++..+.+.|++++|.+.++++. ..|+.. .+..+...+. ..|++++|+
T Consensus 217 ~---~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~-~~~~~~~A~ 292 (359)
T 3ieg_A 217 L---DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFS-KDEKPVEAI 292 (359)
T ss_dssp H---CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHH-HTTCHHHHH
T ss_pred h---CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHH-HccCHHHHH
Confidence 5 453 33332 33777999999999999998864 344422 2344556677 999999999
Q ss_pred HHHHHHHhhCCCCCCcHHHHhHHHHhhCCcHHHHHHHHHHhhc
Q 007519 523 HAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLK 565 (600)
Q Consensus 523 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 565 (600)
..++++++..|+++.++..++.++...|++++|.+.++...+.
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 293 RICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH 335 (359)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999988776654
No 17
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.83 E-value=2.4e-18 Score=163.49 Aligned_cols=341 Identities=16% Similarity=0.152 Sum_probs=164.8
Q ss_pred HhcCChhhHHHHhccCCCCCcchHHHHHHHHHcCCChhHHHHHhhhcCCCChhhHHHHHHHHHhcCChHHHHHHhhcCCC
Q 007519 22 SKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPE 101 (600)
Q Consensus 22 ~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 101 (600)
.+.|+.++|.+.++++..| .+|..|+.++.+.|++++|++.|.+. +|..+|..++.++...|++++|+..++...+
T Consensus 14 ~~~~~ld~A~~fae~~~~~--~vWs~La~A~l~~g~~~eAIdsfika--~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark 89 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARK 89 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCCCh--HHHHHHHHHHHHcCCHHHHHHHHHcC--CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 4668899999999999555 58999999999999999999999775 6777999999999999999999998887765
Q ss_pred --CCceeHHHHHHHHHHCCChhHHHHHhhcCCCCCcccHHHHHHHHHhcCCHhHHHHHHHhcccCCchhHHHHHHHHHhc
Q 007519 102 --RNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRA 179 (600)
Q Consensus 102 --~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~ 179 (600)
+++.+.+.++.+|.+.|+++++.++++. |+..+|..++..|...|.+++|...|..+ ..|..++.++.+.
T Consensus 90 ~~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-----~n~~~LA~~L~~L 161 (449)
T 1b89_A 90 KARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHL 161 (449)
T ss_dssp -------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT-----TCHHHHHHHHHTT
T ss_pred hCccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----hhHHHHHHHHHHh
Confidence 5678899999999999999999888764 77789999999999999999999999977 5899999999999
Q ss_pred CChhHHHHHHccCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHhcCChhhHHHHhc
Q 007519 180 GEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFD 259 (600)
Q Consensus 180 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 259 (600)
|++++|.+.++++ .++.+|..++.+|...|+++.|......+. +.| .-...++..|.+.|.+++|..+++
T Consensus 162 g~yq~AVea~~KA--~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~------~~a--d~l~~lv~~Yek~G~~eEai~lLe 231 (449)
T 1b89_A 162 GEYQAAVDGARKA--NSTRTWKEVCFACVDGKEFRLAQMCGLHIV------VHA--DELEELINYYQDRGYFEELITMLE 231 (449)
T ss_dssp TCHHHHHHHHHHH--TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT------TCH--HHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHc--CCchhHHHHHHHHHHcCcHHHHHHHHHHHH------hCH--hhHHHHHHHHHHCCCHHHHHHHHH
Confidence 9999999999998 388999999999999999999966554322 233 335578899999999999999999
Q ss_pred ccCCC---CchhHHHHHHHHHh--cCChHHHHHHHhhCCC--------CChhhHHHHHHHHHhCCChhHHHHHHHHHHHC
Q 007519 260 TVPVR---DEISWTSMIDGYLS--VGQVSNAYYLFHNMPD--------RDAVAWTAMISGLVQNELFVEATYLFMEMRAH 326 (600)
Q Consensus 260 ~~~~~---~~~~~~~l~~~~~~--~~~~~~A~~~~~~~~~--------~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 326 (600)
..... ....|+.+.-.|++ .++..+.++.|..-.. .+...|..+...|.+.++++.|... |.++
T Consensus 232 ~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~t---m~~h 308 (449)
T 1b89_A 232 AALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT---MMNH 308 (449)
T ss_dssp HHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHH---HHHS
T ss_pred HHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHH---HHhC
Confidence 88733 44567777777766 4566777777765444 2567899999999999999998874 4443
Q ss_pred CCCCChhHHHHHHHHHhcccchhhhHHHHHHHhhhcCCCchhHHHHHHHHHHhcCChHHHHHHHhcC
Q 007519 327 GVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNM 393 (600)
Q Consensus 327 g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 393 (600)
+|+...-..+.....+..+.+.-.+........ .+...+-|+.++...=+...+..+|++.
T Consensus 309 --~~~a~~~~~f~~~~~kv~n~elyYkai~fyl~~----~p~~l~~ll~~l~~~ld~~r~v~~~~~~ 369 (449)
T 1b89_A 309 --PTDAWKEGQFKDIITKVANVELYYRAIQFYLEF----KPLLLNDLLMVLSPRLDHTRAVNYFSKV 369 (449)
T ss_dssp --TTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHH----CGGGHHHHHHHHGGGCCHHHHHHHHHHT
T ss_pred --ChhhhhhHHHHHHHhchhHHHHHHHHHHHHHhc----CHHHHHHHHHHHHhccCcHHHHHHHHHc
Confidence 344333333344444555544433333322211 2233455555555555555555555443
No 18
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.82 E-value=3.9e-18 Score=163.54 Aligned_cols=251 Identities=12% Similarity=-0.002 Sum_probs=166.5
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhccc-chhhhHHHHHHHhhhcCCCchhHHHHHHHHH
Q 007519 299 AWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATA-NIDLGRQIHCVLMKTESESDLILENCLISMY 377 (600)
Q Consensus 299 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 377 (600)
.+..++..+...|++++|+..++++.+.. +.+...+..+...+...| +++.|...++.+.+.... +...+..+...+
T Consensus 58 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~ 135 (330)
T 3hym_B 58 CLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKT-YGPAWIAYGHSF 135 (330)
T ss_dssp THHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTT-CTHHHHHHHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCc-cHHHHHHHHHHH
Confidence 33344444455555555555555554431 223334444444555555 555555555554443322 344566666777
Q ss_pred HhcCChHHHHHHHhcCC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccCchHHHHH
Q 007519 378 AKCGVIDNAYNIFSNMV---SRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWE 454 (600)
Q Consensus 378 ~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~ 454 (600)
...|++++|...++++. +.+...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|..
T Consensus 136 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~ 214 (330)
T 3hym_B 136 AVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEK 214 (330)
T ss_dssp HHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHH
Confidence 77777777777777665 3345666667777888888888888888887642 3445667777778888888888888
Q ss_pred HHHHHHhhcCC-------CCCcchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHhhhhCCHHHHHHHH
Q 007519 455 LFNAMFDVYKI-------QPGPEHYVSMINLLGRAGKIKEAEEFVLRLP-FEP-DHRIWGALLGACGFCEGNAEIAEHAA 525 (600)
Q Consensus 455 ~~~~~~~~~~~-------~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~g~~~~a~~~~ 525 (600)
.++++.+...- .....++..++.+|...|++++|.+.+++.. ..| +...+..+...+. ..|++++|+..+
T Consensus 215 ~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~ 293 (330)
T 3hym_B 215 WFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHS-LMGNFENAVDYF 293 (330)
T ss_dssp HHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHH-HHTCHHHHHHHH
T ss_pred HHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHH-HhccHHHHHHHH
Confidence 88887764211 2235678888888888999999988888764 333 4566777777777 889999999999
Q ss_pred HHHHhhCCCCCCcHHHHhHHH-HhhCCcH
Q 007519 526 KRLLELDPLNAPAHVVLCNIY-AASGRHV 553 (600)
Q Consensus 526 ~~~~~~~p~~~~~~~~l~~~~-~~~g~~~ 553 (600)
++++++.|+++..+..++.++ ...|+.+
T Consensus 294 ~~al~~~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 294 HTALGLRRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HTTTTTCSCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHHccCCCchHHHHHHHHHHHHHhCchh
Confidence 999999998888888888887 4556643
No 19
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.81 E-value=3.9e-18 Score=162.06 Aligned_cols=355 Identities=11% Similarity=0.109 Sum_probs=178.5
Q ss_pred CccchhHHHHHHHhcCChhhHHHHhccCCCCCcchHHHHHHHHHcCCChhHHHHHhhhcCC--CChhhHHHHHHHHHhcC
Q 007519 10 LVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPE--RNVVSWTAMICGLADAG 87 (600)
Q Consensus 10 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~g 87 (600)
++.+|..++.++.+.|++++|++.|.+. +|..+|..++..+...|++++|...++...+ +++.+.+.|+.+|.+.|
T Consensus 31 ~~~vWs~La~A~l~~g~~~eAIdsfika--~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~~~~~~i~~~Li~~Y~Klg 108 (449)
T 1b89_A 31 EPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTN 108 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHcC--CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHhC
Confidence 3458999999999999999999999775 6777999999999999999999998887775 56788999999999999
Q ss_pred ChHHHHHHhhcCCCCCceeHHHHHHHHHHCCChhHHHHHhhcCCCCCcccHHHHHHHHHhcCCHhHHHHHHHhcccCCch
Q 007519 88 RVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVV 167 (600)
Q Consensus 88 ~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 167 (600)
+++++.++++. |+..+|+.++..|...|.+++|...|..+ ..|..++.++.+.|++++|.+.+.++ .++.
T Consensus 109 ~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-----~n~~~LA~~L~~Lg~yq~AVea~~KA--~~~~ 178 (449)
T 1b89_A 109 RLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA--NSTR 178 (449)
T ss_dssp CHHHHTTTTTC---C----------------CTTTHHHHHHHT-----TCHHHHHHHHHTTTCHHHHHHHHHHH--TCHH
T ss_pred CHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----hhHHHHHHHHHHhccHHHHHHHHHHc--CCch
Confidence 99999888864 78889999999999999999999999988 69999999999999999999999998 4889
Q ss_pred hHHHHHHHHHhcCChhHHHHHHccCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHh
Q 007519 168 TWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIR 247 (600)
Q Consensus 168 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 247 (600)
+|..++.+|...|+++.|......+. ..+.-...++..|.+.|.+++|..+++..... -+-....|+-+.-+|++
T Consensus 179 ~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~l----e~ah~~~ftel~il~~k 253 (449)
T 1b89_A 179 TWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGYFEELITMLEAALGL----ERAHMGMFTELAILYSK 253 (449)
T ss_dssp HHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS----TTCCHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCC----cHHHHHHHHHHHHHHHh
Confidence 99999999999999999988887765 34444557899999999999999999999854 12335566666666665
Q ss_pred --cCChhhHHHHhcccC---C-----CCchhHHHHHHHHHhcCChHHHHHHHhhCCC---------------CChhhHHH
Q 007519 248 --FGRLEEAQNLFDTVP---V-----RDEISWTSMIDGYLSVGQVSNAYYLFHNMPD---------------RDAVAWTA 302 (600)
Q Consensus 248 --~~~~~~a~~~~~~~~---~-----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---------------~~~~~~~~ 302 (600)
.++..+.+++|..-. + .+...|..++..|...++++.|....-+-.. .+...|-.
T Consensus 254 y~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h~~~a~~~~~f~~~~~kv~n~elyYk 333 (449)
T 1b89_A 254 FKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYR 333 (449)
T ss_dssp TCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHSTTTTCCHHHHHHHHHHCSSTHHHHH
T ss_pred cCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHhCChhhhhhHHHHHHHhchhHHHHHHH
Confidence 455666666665443 2 3677899999999999999999876655432 23444555
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhcccchhhhHHHHHHHhhhcCCCchhHHHHHHHHHHhcCC
Q 007519 303 MISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGV 382 (600)
Q Consensus 303 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 382 (600)
.+..|. +.....+.-+-......+. .+.++..+.+.|++..+..++..+...+ +..+-.++-+.|....+
T Consensus 334 ai~fyl--~~~p~~l~~ll~~l~~~ld-----~~r~v~~~~~~~~l~l~~~yl~~v~~~n---~~~vnealn~l~ieeed 403 (449)
T 1b89_A 334 AIQFYL--EFKPLLLNDLLMVLSPRLD-----HTRAVNYFSKVKQLPLVKPYLRSVQNHN---NKSVNESLNNLFITEED 403 (449)
T ss_dssp HHHHHH--HHCGGGHHHHHHHHGGGCC-----HHHHHHHHHHTTCTTTTHHHHHHHHTTC---CHHHHHHHHHHHHHTTC
T ss_pred HHHHHH--hcCHHHHHHHHHHHHhccC-----cHHHHHHHHHcCCcHHHHHHHHHHHHhh---HHHHHHHHHHHHHhhhh
Confidence 555444 1122222222222111111 1233344445555555555554444332 33444455555555555
Q ss_pred hHHHHHHHh
Q 007519 383 IDNAYNIFS 391 (600)
Q Consensus 383 ~~~A~~~~~ 391 (600)
++.-+.-.+
T Consensus 404 ~~~lr~si~ 412 (449)
T 1b89_A 404 YQALRTSID 412 (449)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 554444333
No 20
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.80 E-value=9.7e-17 Score=162.60 Aligned_cols=365 Identities=9% Similarity=-0.041 Sum_probs=257.0
Q ss_pred CCchhHHHHHHHHHh----cCChhHHHHHHccCCC-CCcchHHHHHHHHHh----cCChhHHHHHHHHHHhhhcCCCCCC
Q 007519 164 RNVVTWTSMISGYCR----AGEVEEGYCLFRRMPR-KNVVSWTAMIGGFAW----NGFHKESLLLFIEMKGICDNGNNCN 234 (600)
Q Consensus 164 ~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~ 234 (600)
.++..+..+...|.. .+++++|...|++..+ .+..++..|...|.. .+++++|...|++..+. .+
T Consensus 37 g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~------~~ 110 (490)
T 2xm6_A 37 GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK------GL 110 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT------TC
T ss_pred CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC------CC
Confidence 345555555555555 5666666666665443 344556666666666 66677777777666542 24
Q ss_pred hhhHHHHHHHHHh----cCChhhHHHHhcccC-CCCchhHHHHHHHHHh----cCChHHHHHHHhhCCC-CChhhHHHHH
Q 007519 235 VQSCNSMINGYIR----FGRLEEAQNLFDTVP-VRDEISWTSMIDGYLS----VGQVSNAYYLFHNMPD-RDAVAWTAMI 304 (600)
Q Consensus 235 ~~~~~~l~~~~~~----~~~~~~a~~~~~~~~-~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~-~~~~~~~~li 304 (600)
...+..|...|.. .+++++|..+|+... ..++..+..+...|.. .+++++|+..|++..+ .+..++..+.
T Consensus 111 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg 190 (490)
T 2xm6_A 111 PQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLG 190 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4555556666665 566777777766655 3345556666666665 6677777777766543 4566677777
Q ss_pred HHHHh----CCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhc----ccchhhhHHHHHHHhhhcCCCchhHHHHHHHH
Q 007519 305 SGLVQ----NELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGA----TANIDLGRQIHCVLMKTESESDLILENCLISM 376 (600)
Q Consensus 305 ~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 376 (600)
..|.. .+++++|+..|++..+.| +...+..+...+.. .++.++|..+++...+.+ +...+..+...
T Consensus 191 ~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~ 264 (490)
T 2xm6_A 191 YMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYI 264 (490)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHH
T ss_pred HHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHH
Confidence 77776 788888888888877754 44555556666654 678888888888777654 34455566666
Q ss_pred HHh----cCChHHHHHHHhcCC-CCChhhHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCCCChhHHHHHHHHhccc
Q 007519 377 YAK----CGVIDNAYNIFSNMV-SRDLVSWNSMVMGFSHH-----GLANETLKVFESMLESGTHPNSVTFLGILSACSHA 446 (600)
Q Consensus 377 ~~~----~~~~~~A~~~~~~~~-~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 446 (600)
|.. .+++++|...|++.. ..+...+..+...|... +++++|+..|++..+.| +...+..+...+...
T Consensus 265 y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~ 341 (490)
T 2xm6_A 265 LEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRL 341 (490)
T ss_dssp HHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHS
T ss_pred HHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhC
Confidence 766 789999999998876 44667777888888877 89999999999998865 344556666666654
Q ss_pred C---chHHHHHHHHHHHhhcCCCCCcchHHHHHHHHhh----cCChHHHHHHHHhCCCCCCHHHHHHHHHHHhhh----h
Q 007519 447 G---LVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGR----AGKIKEAEEFVLRLPFEPDHRIWGALLGACGFC----E 515 (600)
Q Consensus 447 g---~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~----~ 515 (600)
| +.++|.++|++..+. .++..+..|+..|.. .+++++|.+.+++.....+...+..+...+. . .
T Consensus 342 g~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~Lg~~y~-~g~g~~ 416 (490)
T 2xm6_A 342 GSEEEHKKAVEWFRKAAAK----GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEIYY-YGLGVE 416 (490)
T ss_dssp CCHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HTSSSC
T ss_pred CCcccHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH-cCCCCC
Confidence 5 889999999999874 357788899999988 8999999999988754446777777777777 6 7
Q ss_pred CCHHHHHHHHHHHHhhCCC---CCCcHHHHhHHHHh
Q 007519 516 GNAEIAEHAAKRLLELDPL---NAPAHVVLCNIYAA 548 (600)
Q Consensus 516 g~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~ 548 (600)
+|.++|+..|+++.+..|+ ++.....++.++..
T Consensus 417 ~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~ 452 (490)
T 2xm6_A 417 RDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTAK 452 (490)
T ss_dssp CCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHH
T ss_pred CCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHh
Confidence 8999999999999999853 66677777766554
No 21
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.80 E-value=5.7e-18 Score=165.15 Aligned_cols=256 Identities=13% Similarity=0.032 Sum_probs=180.8
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhcccchhhhHHHHHHHhhhcCCCchhHHHHHHHHHH
Q 007519 299 AWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYA 378 (600)
Q Consensus 299 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 378 (600)
.+..+...+.+.|++++|+..|+++.+.. +.+...+..+..++...|+++.|...+..+.+... .+..++..+...+.
T Consensus 66 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~ 143 (368)
T 1fch_A 66 QPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELKP-DNQTALMALAVSFT 143 (368)
T ss_dssp SHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHH
Confidence 44455555555555555555555555542 22334444555555555555555555555554432 24445555556666
Q ss_pred hcCChHHHHHHHhcCC---CCChhhHHH---------------HHHHHHhcCChHHHHHHHHHHHHcCCCC-ChhHHHHH
Q 007519 379 KCGVIDNAYNIFSNMV---SRDLVSWNS---------------MVMGFSHHGLANETLKVFESMLESGTHP-NSVTFLGI 439 (600)
Q Consensus 379 ~~~~~~~A~~~~~~~~---~~~~~~~~~---------------l~~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~l 439 (600)
..|++++|...++++. +.+...+.. .+..+...|++++|+..|+++.+..... +..++..+
T Consensus 144 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l 223 (368)
T 1fch_A 144 NESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGL 223 (368)
T ss_dssp HTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHH
Confidence 6666666666665543 111111111 1233338899999999999998853111 46788888
Q ss_pred HHHhcccCchHHHHHHHHHHHhhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHhhhhC
Q 007519 440 LSACSHAGLVSRGWELFNAMFDVYKIQP-GPEHYVSMINLLGRAGKIKEAEEFVLRLP-FEP-DHRIWGALLGACGFCEG 516 (600)
Q Consensus 440 ~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~g 516 (600)
...+...|++++|...++++.+. .| +...+..++..|...|++++|.+.++++. ..| +...+..+...+. ..|
T Consensus 224 ~~~~~~~g~~~~A~~~~~~al~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~-~~g 299 (368)
T 1fch_A 224 GVLFNLSGEYDKAVDCFTAALSV---RPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCI-NLG 299 (368)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh---CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH-HCC
Confidence 99999999999999999999875 45 57789999999999999999999999874 344 5677888888888 999
Q ss_pred CHHHHHHHHHHHHhhCCCC-----------CCcHHHHhHHHHhhCCcHHHHHHHH
Q 007519 517 NAEIAEHAAKRLLELDPLN-----------APAHVVLCNIYAASGRHVEEHKLRM 560 (600)
Q Consensus 517 ~~~~a~~~~~~~~~~~p~~-----------~~~~~~l~~~~~~~g~~~~A~~~~~ 560 (600)
++++|+..+++++++.|++ +.++..++.+|...|++++|..+++
T Consensus 300 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 354 (368)
T 1fch_A 300 AHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADA 354 (368)
T ss_dssp CHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHT
T ss_pred CHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHH
Confidence 9999999999999998877 6889999999999999999999764
No 22
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.80 E-value=2.9e-17 Score=157.45 Aligned_cols=263 Identities=13% Similarity=0.029 Sum_probs=225.6
Q ss_pred CChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhcccchhhhHHHHHHHhhhcCCCchhHHHHHH
Q 007519 295 RDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLI 374 (600)
Q Consensus 295 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 374 (600)
.+...+..++..+...|++++|+.+|+++.+.. +.+...+..+..++...|+.+.|...+..+.+.... +...+..+.
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~ 97 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPS-NPVSWFAVG 97 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-STHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHHHH
Confidence 456677788888999999999999999998863 444556777888889999999999999998886543 567788899
Q ss_pred HHHHhcC-ChHHHHHHHhcCC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccCchH
Q 007519 375 SMYAKCG-VIDNAYNIFSNMV---SRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVS 450 (600)
Q Consensus 375 ~~~~~~~-~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~ 450 (600)
..+...| ++++|...|+++. +.+...|..+...+...|++++|+..++++.+.. +.+...+..+...+...|+++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHH
Confidence 9999999 9999999999876 4567789999999999999999999999999863 444567777889999999999
Q ss_pred HHHHHHHHHHhhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHhCC-C----------CCCHHHHHHHHHHHhhhhCCH
Q 007519 451 RGWELFNAMFDVYKIQP-GPEHYVSMINLLGRAGKIKEAEEFVLRLP-F----------EPDHRIWGALLGACGFCEGNA 518 (600)
Q Consensus 451 ~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~----------~p~~~~~~~l~~~~~~~~g~~ 518 (600)
+|.+.++++.+. .| +...+..++..+...|++++|.+.+++.. . +.....+..+...+. ..|++
T Consensus 177 ~A~~~~~~al~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~ 252 (330)
T 3hym_B 177 LAERFFSQALSI---APEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCR-KLKKY 252 (330)
T ss_dssp HHHHHHHHHHTT---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHH-HTTCH
T ss_pred HHHHHHHHHHHh---CCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHH-HhcCH
Confidence 999999999864 45 57889999999999999999999998763 1 233567888888888 99999
Q ss_pred HHHHHHHHHHHhhCCCCCCcHHHHhHHHHhhCCcHHHHHHHHHHhh
Q 007519 519 EIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGL 564 (600)
Q Consensus 519 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 564 (600)
++|+..++++++..|+++.++..++.++...|++++|.+.++...+
T Consensus 253 ~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 298 (330)
T 3hym_B 253 AEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALG 298 (330)
T ss_dssp HHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999998865544
No 23
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.78 E-value=1e-17 Score=163.29 Aligned_cols=284 Identities=12% Similarity=0.049 Sum_probs=133.9
Q ss_pred HhcCChhHHHH-HHccCCC--C-----CcchHHHHHHHHHhcCChhHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHhc
Q 007519 177 CRAGEVEEGYC-LFRRMPR--K-----NVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRF 248 (600)
Q Consensus 177 ~~~g~~~~A~~-~~~~~~~--~-----~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 248 (600)
...|++++|.. .|++... + +...+..+...+...|++++|+..|+++.+. .+.+..++..+..++...
T Consensus 36 ~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~l~~~~~~~ 111 (368)
T 1fch_A 36 PWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQ----DPKHMEAWQYLGTTQAEN 111 (368)
T ss_dssp ----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHS----CTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHC
Confidence 34456666666 5554432 1 2344566666666666666666666666653 122344555555555555
Q ss_pred CChhhHHHHhcccCCCCchhHHHHHHHHHhcCChHHHHHHHhhCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCC
Q 007519 249 GRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGV 328 (600)
Q Consensus 249 ~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 328 (600)
|++++|...++.+... ...+..++..+...+...|++++|+..++++....
T Consensus 112 g~~~~A~~~~~~al~~----------------------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~- 162 (368)
T 1fch_A 112 EQELLAISALRRCLEL----------------------------KPDNQTALMALAVSFTNESLQRQACEILRDWLRYT- 162 (368)
T ss_dssp TCHHHHHHHHHHHHHH----------------------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-
T ss_pred cCHHHHHHHHHHHHhc----------------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 5555555555544310 11244556666666666777777777777666642
Q ss_pred CCChhH-HHH---------------HHHHHhcccchhhhHHHHHHHhhhcCCCchhHHHHHHHHHHhcCChHHHHHHHhc
Q 007519 329 PPLNAT-FSV---------------LFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSN 392 (600)
Q Consensus 329 ~p~~~~-~~~---------------l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 392 (600)
|+... +.. .+..+...|+++.|...+..+.+.....
T Consensus 163 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~--------------------------- 214 (368)
T 1fch_A 163 -PAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTS--------------------------- 214 (368)
T ss_dssp -TTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTS---------------------------
T ss_pred -cCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCc---------------------------
Confidence 22211 110 1111123444444444444433332211
Q ss_pred CCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCC-Ccch
Q 007519 393 MVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQP-GPEH 471 (600)
Q Consensus 393 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~ 471 (600)
++..++..+...+...|++++|+..|+++.... +.+...+..+...+...|++++|...++++.+. .| +...
T Consensus 215 ---~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~~~~~~~ 287 (368)
T 1fch_A 215 ---IDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALEL---QPGYIRS 287 (368)
T ss_dssp ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHH
T ss_pred ---ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCcHHH
Confidence 023444455555555555555555555554431 223344445555555555555555555555442 23 3445
Q ss_pred HHHHHHHHhhcCChHHHHHHHHhCC-CCC------------CHHHHHHHHHHHhhhhCCHHHHHHHHHHHH
Q 007519 472 YVSMINLLGRAGKIKEAEEFVLRLP-FEP------------DHRIWGALLGACGFCEGNAEIAEHAAKRLL 529 (600)
Q Consensus 472 ~~~l~~~~~~~g~~~~A~~~~~~~~-~~p------------~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~ 529 (600)
+..++.+|.+.|++++|.+.++++. ..| ...+|..+..++. ..|+.++|..++++.+
T Consensus 288 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~l 357 (368)
T 1fch_A 288 RYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALS-MLGQSDAYGAADARDL 357 (368)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHH-HHTCGGGHHHHHTTCH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHH-HhCChHhHHHhHHHHH
Confidence 5555555555555555555554432 111 1344555555555 5555555555554443
No 24
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.78 E-value=1.8e-16 Score=147.98 Aligned_cols=241 Identities=10% Similarity=-0.020 Sum_probs=172.6
Q ss_pred HHHHHhcCChHHHHHHHhhCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhcccchhhhH
Q 007519 273 IDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGR 352 (600)
Q Consensus 273 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~ 352 (600)
..+|...|+++.|+..++....++..++..+...+...|+.++|++.++++...+..|+
T Consensus 41 ~r~yi~~g~~~~al~~~~~~~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~--------------------- 99 (291)
T 3mkr_A 41 YRAYLAQRKYGVVLDEIKPSSAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVT--------------------- 99 (291)
T ss_dssp HHHHHHTTCHHHHHHHSCTTSCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCS---------------------
T ss_pred HHHHHHCCCHHHHHHHhcccCChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCC---------------------
Confidence 34444444444444444333223334455555555566666666666666655544443
Q ss_pred HHHHHHhhhcCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 007519 353 QIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPN 432 (600)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~ 432 (600)
+...+..+..++...|++++|.+.+++ +.+...+..++..+.+.|++++|.+.|+++.+. .|+
T Consensus 100 -------------~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~ 162 (291)
T 3mkr_A 100 -------------NTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ--DED 162 (291)
T ss_dssp -------------CHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT
T ss_pred -------------CHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CcC
Confidence 334455667788889999999999998 678889999999999999999999999999986 465
Q ss_pred hhHH---HHHHHHhcccCchHHHHHHHHHHHhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHH
Q 007519 433 SVTF---LGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLP-FEP-DHRIWGAL 507 (600)
Q Consensus 433 ~~~~---~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l 507 (600)
.... ..++..+...|++++|..+|+++.+. .+.++..++.++.++.+.|++++|.+.++++. ..| +..++..+
T Consensus 163 ~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l 240 (291)
T 3mkr_A 163 ATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINL 240 (291)
T ss_dssp CHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 4322 12334444569999999999999985 23368889999999999999999999999964 445 56788888
Q ss_pred HHHHhhhhCCHHH-HHHHHHHHHhhCCCCCCcHHHHhHHHHhhCCcHHHHHH
Q 007519 508 LGACGFCEGNAEI-AEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKL 558 (600)
Q Consensus 508 ~~~~~~~~g~~~~-a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 558 (600)
+..+. ..|+..+ +.++++++++++|+++.+.. ...+.+.++++..-
T Consensus 241 ~~~~~-~~g~~~eaa~~~~~~~~~~~P~~~~~~d----~~~~~~~fd~~~~~ 287 (291)
T 3mkr_A 241 VVLSQ-HLGKPPEVTNRYLSQLKDAHRSHPFIKE----YRAKENDFDRLVLQ 287 (291)
T ss_dssp HHHHH-HTTCCHHHHHHHHHHHHHHCTTCHHHHH----HHHHHHHHHHHHHH
T ss_pred HHHHH-HcCCCHHHHHHHHHHHHHhCCCChHHHH----HHHHHHHHHHHHHH
Confidence 88888 8888865 67899999999998776544 45566677766653
No 25
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.77 E-value=1.3e-15 Score=154.22 Aligned_cols=351 Identities=11% Similarity=-0.015 Sum_probs=290.9
Q ss_pred CCcchHHHHHHHHHh----cCChhHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHh----cCChhhHHHHhcccC-CCC
Q 007519 195 KNVVSWTAMIGGFAW----NGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIR----FGRLEEAQNLFDTVP-VRD 265 (600)
Q Consensus 195 ~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~-~~~ 265 (600)
.+..++..+...|.. .+++++|+..|+...+. .+...+..|...|.. .+++++|..+|++.. ..+
T Consensus 37 g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~------~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~ 110 (490)
T 2xm6_A 37 GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ------GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGL 110 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC------CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 466777888888888 89999999999999863 356788888888988 899999999999887 446
Q ss_pred chhHHHHHHHHHh----cCChHHHHHHHhhCCC-CChhhHHHHHHHHHh----CCChhHHHHHHHHHHHCCCCCChhHHH
Q 007519 266 EISWTSMIDGYLS----VGQVSNAYYLFHNMPD-RDAVAWTAMISGLVQ----NELFVEATYLFMEMRAHGVPPLNATFS 336 (600)
Q Consensus 266 ~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~~~~ 336 (600)
+..+..|...|.. .+++++|+..|++..+ .+..++..+...|.. .+++++|+..|++..+.| +...+.
T Consensus 111 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~ 187 (490)
T 2xm6_A 111 PQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCN 187 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 7778888888988 8899999999998765 466788888888887 789999999999998875 566777
Q ss_pred HHHHHHhc----ccchhhhHHHHHHHhhhcCCCchhHHHHHHHHHHh----cCChHHHHHHHhcCC-CCChhhHHHHHHH
Q 007519 337 VLFGAAGA----TANIDLGRQIHCVLMKTESESDLILENCLISMYAK----CGVIDNAYNIFSNMV-SRDLVSWNSMVMG 407 (600)
Q Consensus 337 ~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~-~~~~~~~~~l~~~ 407 (600)
.+...+.. .++.++|...+....+.+ +...+..+...|.. .+++++|..+|++.. ..+...+..+...
T Consensus 188 ~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~ 264 (490)
T 2xm6_A 188 QLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYI 264 (490)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 77777776 889999999999888765 45666777888876 889999999999876 4566777888888
Q ss_pred HHh----cCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhccc-----CchHHHHHHHHHHHhhcCCCCCcchHHHHHHH
Q 007519 408 FSH----HGLANETLKVFESMLESGTHPNSVTFLGILSACSHA-----GLVSRGWELFNAMFDVYKIQPGPEHYVSMINL 478 (600)
Q Consensus 408 ~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~-----g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 478 (600)
+.. .++.++|+..|++..+.| +...+..+...+... +++++|...++++.+. .++..+..|+..
T Consensus 265 y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~ 337 (490)
T 2xm6_A 265 LEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ----GDATAQANLGAI 337 (490)
T ss_dssp HHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT----TCHHHHHHHHHH
T ss_pred HHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc----CCHHHHHHHHHH
Confidence 887 899999999999998764 445566666666666 8999999999999874 245678889999
Q ss_pred HhhcC---ChHHHHHHHHhCCCCCCHHHHHHHHHHHhhh----hCCHHHHHHHHHHHHhhCCCCCCcHHHHhHHHHh---
Q 007519 479 LGRAG---KIKEAEEFVLRLPFEPDHRIWGALLGACGFC----EGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAA--- 548 (600)
Q Consensus 479 ~~~~g---~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~--- 548 (600)
|...| ++++|.+.+++.....+...+..+...+. . .++.++|+..++++.+.. ++..+..|+.+|..
T Consensus 338 y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~-~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~g 414 (490)
T 2xm6_A 338 YFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALL-QGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGLG 414 (490)
T ss_dssp HHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSS
T ss_pred HHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCC
Confidence 88867 88999999988754467778888888887 6 789999999999998864 67889999999998
Q ss_pred -hCCcHHHHHHHHHHhhcCC
Q 007519 549 -SGRHVEEHKLRMDMGLKGV 567 (600)
Q Consensus 549 -~g~~~~A~~~~~~~~~~~~ 567 (600)
.+++++|..+++...+.+.
T Consensus 415 ~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 415 VERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp SCCCHHHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHHCCC
Confidence 8999999998888777663
No 26
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.77 E-value=2e-15 Score=154.53 Aligned_cols=404 Identities=11% Similarity=0.036 Sum_probs=256.2
Q ss_pred CcccHHHHHHHHHhcCCHhHHHHHHHhccc--C-CchhHHHHHHHHHhcCChhHHHHHHccCCC--CCcchHHHHHHHH-
Q 007519 134 NVISWNAMIAGYVECCMMGEAIVLFEEMEE--R-NVVTWTSMISGYCRAGEVEEGYCLFRRMPR--KNVVSWTAMIGGF- 207 (600)
Q Consensus 134 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~- 207 (600)
+...|..++. +.+.|++++|..+|+.+.+ | +...|..++..+.+.|++++|..+|++... |+...|...+...
T Consensus 12 ~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~lw~~~~~~~~ 90 (530)
T 2ooe_A 12 DLDAWSILIR-EAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLSYVR 90 (530)
T ss_dssp CHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHHHHHHHHHHH
T ss_pred CHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 4556677776 3667888888888888774 3 345677778888888888888888887765 5555566555433
Q ss_pred HhcCChhHHHH----HHHHHHhhhcCCCCC-ChhhHHHHHHHHHh---------cCChhhHHHHhcccCCC-Cc---hhH
Q 007519 208 AWNGFHKESLL----LFIEMKGICDNGNNC-NVQSCNSMINGYIR---------FGRLEEAQNLFDTVPVR-DE---ISW 269 (600)
Q Consensus 208 ~~~~~~~~a~~----~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~~-~~---~~~ 269 (600)
...|+.+.|.+ +|+..... .|..| +...|...+....+ .|+++.|..+|++.... .. ..|
T Consensus 91 ~~~~~~~~a~~~~~~~~~~al~~--~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~ 168 (530)
T 2ooe_A 91 ETKGKLPSYKEKMAQAYDFALDK--IGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLW 168 (530)
T ss_dssp HHTTTSTTHHHHHHHHHHHHHHH--TTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHH
T ss_pred HHccchhhHHHHHHHHHHHHHHH--CCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHH
Confidence 34566666655 66665543 13333 34556566555443 56677777777766531 11 112
Q ss_pred HHHHHHHHhcCChHHHHHHHhhCCCCChhhHHHHHHHHHhCCChhHHHHHHHHH------HHCC---CCCCh--------
Q 007519 270 TSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEM------RAHG---VPPLN-------- 332 (600)
Q Consensus 270 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m------~~~g---~~p~~-------- 332 (600)
..........|. ..+.. ++. ...+++..|..++..+ .+.. ++|+.
T Consensus 169 ~~~~~~e~~~~~-~~~~~---------------~l~--~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~ 230 (530)
T 2ooe_A 169 RDYNKYEEGINI-HLAKK---------------MIE--DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQV 230 (530)
T ss_dssp HHHHHHHHHHCH-HHHHH---------------HHH--TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHH
T ss_pred HHHHHHHHhhch-hHHHH---------------HHH--HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHH
Confidence 111111000000 00001 110 1234456666665542 2211 23331
Q ss_pred hHHHHHHHHHhc----ccch----hhhHHHHHHHhhhcCCCchhHHHHHHHHHHh-------cCChH-------HHHHHH
Q 007519 333 ATFSVLFGAAGA----TANI----DLGRQIHCVLMKTESESDLILENCLISMYAK-------CGVID-------NAYNIF 390 (600)
Q Consensus 333 ~~~~~l~~~~~~----~~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~-------~A~~~~ 390 (600)
..|...+..... .++. ..+..+++.+..... .+..+|..++..+.+ .|+++ +|..+|
T Consensus 231 ~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p-~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~ 309 (530)
T 2ooe_A 231 DMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLG-HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIY 309 (530)
T ss_dssp HHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHH
Confidence 233333322111 1122 355667777766533 356777777777765 68877 889999
Q ss_pred hcCC----CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh--hHHHHHHHHhcccCchHHHHHHHHHHHhhcC
Q 007519 391 SNMV----SRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNS--VTFLGILSACSHAGLVSRGWELFNAMFDVYK 464 (600)
Q Consensus 391 ~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 464 (600)
++.. +.+...|..++..+.+.|++++|..+|+++.+. .|+. ..|..++..+.+.|++++|.++|+++.+.
T Consensus 310 ~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~-- 385 (530)
T 2ooe_A 310 ERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED-- 385 (530)
T ss_dssp HHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--
Confidence 8765 335778888999999999999999999999874 5653 46777788888889999999999998864
Q ss_pred CCC-CcchHHHHHHH-HhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCCC---
Q 007519 465 IQP-GPEHYVSMINL-LGRAGKIKEAEEFVLRLP-FEP-DHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAP--- 537 (600)
Q Consensus 465 ~~p-~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~--- 537 (600)
.| +...+...+.. +...|+.++|.++|++.. ..| +...|..++.... ..|+.++|..+|++++...|.++.
T Consensus 386 -~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~-~~g~~~~Ar~~~~~al~~~~~~~~~~~ 463 (530)
T 2ooe_A 386 -ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLS-HLNEDNNTRVLFERVLTSGSLPPEKSG 463 (530)
T ss_dssp -TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TTTCHHHHHHHHHHHHHSCCSCGGGCH
T ss_pred -cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHH-hCCCHhhHHHHHHHHHhccCCCHHHHH
Confidence 34 23333333322 336899999999998763 344 5677888888777 889999999999999998776655
Q ss_pred -cHHHHhHHHHhhCCcHHHHHHHHHHhhc
Q 007519 538 -AHVVLCNIYAASGRHVEEHKLRMDMGLK 565 (600)
Q Consensus 538 -~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 565 (600)
.+...+......|+.+.+..+.+.+.+.
T Consensus 464 ~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 464 EIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp HHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 6667777777889999998877766544
No 27
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.76 E-value=1.8e-16 Score=160.18 Aligned_cols=253 Identities=11% Similarity=-0.022 Sum_probs=127.8
Q ss_pred CCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHh----cccchhhhHHHHHHHhhhcCCCchhHHHHHHHHHHhcCChHH
Q 007519 310 NELFVEATYLFMEMRAHGVPPLNATFSVLFGAAG----ATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDN 385 (600)
Q Consensus 310 ~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 385 (600)
.++.++|++.+++..+.. +.+...+..+...+. ..++.+.|...++...+.... +..++..+...|...|++++
T Consensus 188 ~~~~~~al~~~~~al~l~-p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~-~~~~~~~lg~~~~~~~~~~~ 265 (472)
T 4g1t_A 188 WPPSQNAIDPLRQAIRLN-PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPG-VTDVLRSAAKFYRRKDEPDK 265 (472)
T ss_dssp SCCCCCTHHHHHHHHHHC-SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHH
T ss_pred chHHHHHHHHHHHHhhcC-CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCcc-HHHHHHHHHHHHHHcCchHH
Confidence 445555555555554431 112222222222222 223445555555544443322 33444555555555666666
Q ss_pred HHHHHhcCC---CCChhhHHHHHHHHHh-------------------cCChHHHHHHHHHHHHcCCCCChhHHHHHHHHh
Q 007519 386 AYNIFSNMV---SRDLVSWNSMVMGFSH-------------------HGLANETLKVFESMLESGTHPNSVTFLGILSAC 443 (600)
Q Consensus 386 A~~~~~~~~---~~~~~~~~~l~~~~~~-------------------~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 443 (600)
|...+++.. +.+..++..+..+|.. .+..+.|...+++..+.. +.+...+..+...+
T Consensus 266 A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~ 344 (472)
T 4g1t_A 266 AIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLH 344 (472)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHH
T ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHH
Confidence 655555543 2333444444433321 223566777777776643 33445667777788
Q ss_pred cccCchHHHHHHHHHHHhhcCCCCC--cchHHHHHHH-HhhcCChHHHHHHHHhCC-CCCCHHHHHHHHHHHhhhhCCHH
Q 007519 444 SHAGLVSRGWELFNAMFDVYKIQPG--PEHYVSMINL-LGRAGKIKEAEEFVLRLP-FEPDHRIWGALLGACGFCEGNAE 519 (600)
Q Consensus 444 ~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~-~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l~~~~~~~~g~~~ 519 (600)
...|++++|.+.|+++.+. ...|. ...+..++.. +...|++++|++.+++.. ..|+..... +...
T Consensus 345 ~~~~~~~~A~~~~~kaL~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~----------~~~~ 413 (472)
T 4g1t_A 345 ALADQYEEAEYYFQKEFSK-ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKE----------KMKD 413 (472)
T ss_dssp HHTTCHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHH----------HHHH
T ss_pred HHhccHHHHHHHHHHHHhc-CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHH----------HHHH
Confidence 8888888888888887754 22221 1123333332 346778888888887753 556543222 2233
Q ss_pred HHHHHHHHHHhhCCCCCCcHHHHhHHHHhhCCcHHHHHHHHHHhhcCCccCCCcceE
Q 007519 520 IAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKVPGCSWL 576 (600)
Q Consensus 520 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 576 (600)
.+..++++.++.+|+++.++..|+.+|...|++++|.+.++...+.+-......+|+
T Consensus 414 ~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~ 470 (472)
T 4g1t_A 414 KLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWN 470 (472)
T ss_dssp HHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC-----------------------
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcC
Confidence 455667778888999999999999999999999999998877666554333334443
No 28
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.76 E-value=3.4e-17 Score=159.48 Aligned_cols=255 Identities=12% Similarity=0.011 Sum_probs=177.8
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhcccchhhhHHHHHHHhhhcCCCchhHHHHHHHHHH
Q 007519 299 AWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYA 378 (600)
Q Consensus 299 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 378 (600)
.+..+...+.+.|++++|+..|+++.+.. +.+...+..+..++...|+++.|...++.+.+... .+...+..+..+|.
T Consensus 67 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~ 144 (365)
T 4eqf_A 67 GAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQP-NNLKALMALAVSYT 144 (365)
T ss_dssp THHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHH
Confidence 34455555555555555555555555432 22344455555555555555555555555554432 23455566666666
Q ss_pred hcCChHHHHHHHhcCCC--C-C----------hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC--ChhHHHHHHHHh
Q 007519 379 KCGVIDNAYNIFSNMVS--R-D----------LVSWNSMVMGFSHHGLANETLKVFESMLESGTHP--NSVTFLGILSAC 443 (600)
Q Consensus 379 ~~~~~~~A~~~~~~~~~--~-~----------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p--~~~~~~~l~~~~ 443 (600)
..|++++|...|+++.. | + ...+..+...+...|++++|+.+++++.+.. +. +...+..+...+
T Consensus 145 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~l~~~~ 223 (365)
T 4eqf_A 145 NTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQN-GDMIDPDLQTGLGVLF 223 (365)
T ss_dssp HTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHS-CSSCCHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhC-cCccCHHHHHHHHHHH
Confidence 66666666666666541 1 1 2233445778889999999999999998863 22 567888888999
Q ss_pred cccCchHHHHHHHHHHHhhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHhhhhCCHHH
Q 007519 444 SHAGLVSRGWELFNAMFDVYKIQP-GPEHYVSMINLLGRAGKIKEAEEFVLRLP-FEP-DHRIWGALLGACGFCEGNAEI 520 (600)
Q Consensus 444 ~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~g~~~~ 520 (600)
...|++++|.+.++++.+. .| +..++..++.+|...|++++|.+.++++. ..| +..++..+...+. ..|++++
T Consensus 224 ~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~-~~g~~~~ 299 (365)
T 4eqf_A 224 HLSGEFNRAIDAFNAALTV---RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCI-NLGAYRE 299 (365)
T ss_dssp HHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCCHH
T ss_pred HHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHH-HCCCHHH
Confidence 9999999999999999875 45 57889999999999999999999998874 445 4778888888888 9999999
Q ss_pred HHHHHHHHHhhCCC------------CCCcHHHHhHHHHhhCCcHHHHHHHH
Q 007519 521 AEHAAKRLLELDPL------------NAPAHVVLCNIYAASGRHVEEHKLRM 560 (600)
Q Consensus 521 a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~ 560 (600)
|+..+++++++.|+ +..++..++.++...|+.+.+..+.+
T Consensus 300 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 351 (365)
T 4eqf_A 300 AVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANL 351 (365)
T ss_dssp HHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHT
T ss_pred HHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 99999999998875 36778999999999999999888664
No 29
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.75 E-value=3e-15 Score=153.29 Aligned_cols=402 Identities=11% Similarity=0.084 Sum_probs=208.9
Q ss_pred CcchHHHHHHHHHcCCChhHHHHHhhhcCC--C-ChhhHHHHHHHHHhcCChHHHHHHhhcCCC--CCceeHHHHHHHH-
Q 007519 41 NVVSYNAMLSGFLQNGRLSEARRLFEEMPE--R-NVVSWTAMICGLADAGRVCEARKLFEEMPE--RNVVSWNSMVVGL- 114 (600)
Q Consensus 41 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~- 114 (600)
+..+|..++.. .+.|++++|..+|+++.+ | +...|..++..+.+.|++++|+.+|+++.+ |+...|..++...
T Consensus 12 ~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~lw~~~~~~~~ 90 (530)
T 2ooe_A 12 DLDAWSILIRE-AQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLSYVR 90 (530)
T ss_dssp CHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 56678888874 678899999999998876 3 445788888888888999999999988876 7666677666533
Q ss_pred HHCCChhHHHH----HhhcCCC------CCcccHHHHHHHHHh---------cCCHhHHHHHHHhccc-CCc---hhHHH
Q 007519 115 IRNGELNEARK----VFNSMPI------KNVISWNAMIAGYVE---------CCMMGEAIVLFEEMEE-RNV---VTWTS 171 (600)
Q Consensus 115 ~~~~~~~~a~~----~~~~~~~------~~~~~~~~l~~~~~~---------~~~~~~A~~~~~~~~~-~~~---~~~~~ 171 (600)
...|+.+.|.+ +|++... ++...|...+..... .|+++.|..+|++..+ |.. ..|..
T Consensus 91 ~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~~ 170 (530)
T 2ooe_A 91 ETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRD 170 (530)
T ss_dssp HHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHHH
T ss_pred HHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHHH
Confidence 35677777665 5554321 234455555555443 5677777777777664 221 11111
Q ss_pred HHHHHHhcCChhHHHHHHccCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhh---hcCC---CCCC--------hhh
Q 007519 172 MISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGI---CDNG---NNCN--------VQS 237 (600)
Q Consensus 172 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---~~~~---~~~~--------~~~ 237 (600)
........|. ..+..++. ...+++..|..++++.... ++.. ++|+ ...
T Consensus 171 ~~~~e~~~~~-~~~~~~l~-----------------~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~ 232 (530)
T 2ooe_A 171 YNKYEEGINI-HLAKKMIE-----------------DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDM 232 (530)
T ss_dssp HHHHHHHHCH-HHHHHHHH-----------------TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHH
T ss_pred HHHHHHhhch-hHHHHHHH-----------------HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHH
Confidence 1111000110 01111111 0234455666555542211 1111 2333 123
Q ss_pred HHHHHHHHHhc----CCh----hhHHHHhcccC---CCCchhHHHHHHHHHh-------cCChH-------HHHHHHhhC
Q 007519 238 CNSMINGYIRF----GRL----EEAQNLFDTVP---VRDEISWTSMIDGYLS-------VGQVS-------NAYYLFHNM 292 (600)
Q Consensus 238 ~~~l~~~~~~~----~~~----~~a~~~~~~~~---~~~~~~~~~l~~~~~~-------~~~~~-------~A~~~~~~~ 292 (600)
|...+...... ++. +++..+|++.. +.++..|..++..+.+ .|+++ +|..+|++.
T Consensus 233 w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~A 312 (530)
T 2ooe_A 233 WKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERA 312 (530)
T ss_dssp HHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHH
Confidence 33333322221 122 24555555554 4456666666666654 56665 666666665
Q ss_pred CC---C-ChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCh--hHHHHHHHHHhcccchhhhHHHHHHHhhhcCCCc
Q 007519 293 PD---R-DAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLN--ATFSVLFGAAGATANIDLGRQIHCVLMKTESESD 366 (600)
Q Consensus 293 ~~---~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 366 (600)
.. | +...|..++..+.+.|++++|..+|+++.+. .|+. ..|......+.+.|+++.|..+++.+.+.... +
T Consensus 313 l~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~-~ 389 (530)
T 2ooe_A 313 ISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-R 389 (530)
T ss_dssp TTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTC-C
T ss_pred HHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCC-c
Confidence 42 2 3456666666666777777777777776663 3432 24544555555555566666655555443211 1
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhccc
Q 007519 367 LILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHA 446 (600)
Q Consensus 367 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 446 (600)
...+...... .+...|+.++|..+|++..+.. +.+...+..++..+...
T Consensus 390 ~~~~~~~a~~------------------------------~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~ 438 (530)
T 2ooe_A 390 HHVYVTAALM------------------------------EYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHL 438 (530)
T ss_dssp THHHHHHHHH------------------------------HHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTT
T ss_pred hHHHHHHHHH------------------------------HHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhC
Confidence 1111111111 1123455555555555554431 22334444555555555
Q ss_pred CchHHHHHHHHHHHhhcCCCCC--cchHHHHHHHHhhcCChHHHHHHHHhC
Q 007519 447 GLVSRGWELFNAMFDVYKIQPG--PEHYVSMINLLGRAGKIKEAEEFVLRL 495 (600)
Q Consensus 447 g~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~ 495 (600)
|+.++|..+|+++.......|+ ...|...+......|+.+.+.++.+++
T Consensus 439 g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~ 489 (530)
T 2ooe_A 439 NEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 489 (530)
T ss_dssp TCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHH
T ss_pred CCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5555555555555543222221 224444455555555555555555443
No 30
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.73 E-value=2.1e-16 Score=151.22 Aligned_cols=255 Identities=9% Similarity=-0.014 Sum_probs=175.1
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhcccchhhhHHHHHHHhhhcCCCchhHHHHHHHHHHh
Q 007519 300 WTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAK 379 (600)
Q Consensus 300 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 379 (600)
+..+...+...|++++|+.+|+++.+.. +.+...+..+..++...|+++.|...++.+.+... .+...+..+...+..
T Consensus 24 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~ 101 (327)
T 3cv0_A 24 PMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP-KDIAVHAALAVSHTN 101 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc-CCHHHHHHHHHHHHH
Confidence 3344444445555555555555544431 22333444444445555555555555554444322 134444555555556
Q ss_pred cCChHHHHHHHhcCC---CCChhhHHHH--------------HH-HHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHH
Q 007519 380 CGVIDNAYNIFSNMV---SRDLVSWNSM--------------VM-GFSHHGLANETLKVFESMLESGTHPNSVTFLGILS 441 (600)
Q Consensus 380 ~~~~~~A~~~~~~~~---~~~~~~~~~l--------------~~-~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~ 441 (600)
.|++++|...++++. +.+...+..+ .. .+...|++++|...++++.+.. +.+...+..+..
T Consensus 102 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 180 (327)
T 3cv0_A 102 EHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLGV 180 (327)
T ss_dssp TTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHH
Confidence 666666666555543 1222222222 22 3667788999999999998763 446678888889
Q ss_pred HhcccCchHHHHHHHHHHHhhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHhhhhCCH
Q 007519 442 ACSHAGLVSRGWELFNAMFDVYKIQP-GPEHYVSMINLLGRAGKIKEAEEFVLRLP-FEP-DHRIWGALLGACGFCEGNA 518 (600)
Q Consensus 442 ~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~g~~ 518 (600)
.+...|++++|.+.++++.+. .| +...+..++..+...|++++|.+.++++. ..| +...+..+...+. ..|++
T Consensus 181 ~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~-~~g~~ 256 (327)
T 3cv0_A 181 LYNLSNNYDSAAANLRRAVEL---RPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYS-NMSQY 256 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCH
T ss_pred HHHHhccHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH-HhccH
Confidence 999999999999999999875 45 57789999999999999999999998864 334 5677888888888 99999
Q ss_pred HHHHHHHHHHHhhCCC------------CCCcHHHHhHHHHhhCCcHHHHHHHHH
Q 007519 519 EIAEHAAKRLLELDPL------------NAPAHVVLCNIYAASGRHVEEHKLRMD 561 (600)
Q Consensus 519 ~~a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~ 561 (600)
++|+..++++++..|+ ++.++..++.++...|++++|..+++.
T Consensus 257 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 311 (327)
T 3cv0_A 257 DLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQ 311 (327)
T ss_dssp HHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 9999999999999997 678899999999999999999997753
No 31
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.73 E-value=2.6e-16 Score=153.21 Aligned_cols=263 Identities=9% Similarity=0.010 Sum_probs=135.7
Q ss_pred cchHHHHHHHHHhcCChhHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHhcCChhhHHHHhcccCCCCchhHHHHHHHH
Q 007519 197 VVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGY 276 (600)
Q Consensus 197 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~ 276 (600)
...|..+...+.+.|++++|+..|+++.+. .+.+..++..+..++...|++++|...|+++...
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~------------ 128 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQ----DPGDAEAWQFLGITQAENENEQAAIVALQRCLEL------------ 128 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHh----CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc------------
Confidence 345666666777777777777777777654 1224455556666666666666666555544310
Q ss_pred HhcCChHHHHHHHhhCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCh-----------hHHHHHHHHHhcc
Q 007519 277 LSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLN-----------ATFSVLFGAAGAT 345 (600)
Q Consensus 277 ~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-----------~~~~~l~~~~~~~ 345 (600)
...+..+|..+...|...|++++|+..|+++.+. .|+. ..+..+...+...
T Consensus 129 ----------------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~l~~~~~~~ 190 (365)
T 4eqf_A 129 ----------------QPNNLKALMALAVSYTNTSHQQDACEALKNWIKQ--NPKYKYLVKNKKGSPGLTRRMSKSPVDS 190 (365)
T ss_dssp ----------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CHHHHCC-------------------CC
T ss_pred ----------------CCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHh--CccchHHHhhhccchHHHHHHHHHHhhh
Confidence 0123445555666666666666666666666553 2221 1112234445555
Q ss_pred cchhhhHHHHHHHhhhcCCC-chhHHHHHHHHHHhcCChHHHHHHHhcCC---CCChhhHHHHHHHHHhcCChHHHHHHH
Q 007519 346 ANIDLGRQIHCVLMKTESES-DLILENCLISMYAKCGVIDNAYNIFSNMV---SRDLVSWNSMVMGFSHHGLANETLKVF 421 (600)
Q Consensus 346 ~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~ 421 (600)
|+++.|...++.+.+..... +..++..+...|...|++++|...|+++. +.+..+|..+..++...|++++|+..|
T Consensus 191 g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 270 (365)
T 4eqf_A 191 SVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAY 270 (365)
T ss_dssp HHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 55555555555555443221 34455555555555566666665555543 334555566666666666666666666
Q ss_pred HHHHHcCCCCChhHHHHHHHHhcccCchHHHHHHHHHHHhhcCCC----------CCcchHHHHHHHHhhcCChHHHHHH
Q 007519 422 ESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQ----------PGPEHYVSMINLLGRAGKIKEAEEF 491 (600)
Q Consensus 422 ~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~----------p~~~~~~~l~~~~~~~g~~~~A~~~ 491 (600)
+++.+.. +.+..++..+..+|...|++++|...|+++.+...-. .+..+|..+..++...|+.+.|.++
T Consensus 271 ~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 349 (365)
T 4eqf_A 271 TRALEIQ-PGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAA 349 (365)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHH
Confidence 6655531 2234455555555666666666666666555431000 0134455555555555555555555
Q ss_pred HHh
Q 007519 492 VLR 494 (600)
Q Consensus 492 ~~~ 494 (600)
.++
T Consensus 350 ~~~ 352 (365)
T 4eqf_A 350 NLG 352 (365)
T ss_dssp HTT
T ss_pred HHh
Confidence 443
No 32
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.71 E-value=3.4e-16 Score=146.04 Aligned_cols=243 Identities=10% Similarity=0.021 Sum_probs=179.6
Q ss_pred HHhCCChhHHHHHHHHHHHCCCCCCh--hHHHHHHHHHhcccchhhhHHHHHHHhhhcCCCchhHHHHHHHHHHhcCChH
Q 007519 307 LVQNELFVEATYLFMEMRAHGVPPLN--ATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVID 384 (600)
Q Consensus 307 ~~~~g~~~~a~~~~~~m~~~g~~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 384 (600)
....|++..|+..++..... .|+. .....+.+++...|+++.|...++. ..+|+...+..+...+...++.+
T Consensus 9 ~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~ 82 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRD 82 (291)
T ss_dssp HHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHH
T ss_pred HHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHH
Confidence 33445555555555443221 2222 1223344455555555555543322 12345566777888888999999
Q ss_pred HHHHHHhcCC-----CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccCchHHHHHHHHHH
Q 007519 385 NAYNIFSNMV-----SRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAM 459 (600)
Q Consensus 385 ~A~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 459 (600)
+|.+.++++. +.+...+..+..++...|++++|++.+++ +.+...+..+...+.+.|++++|.+.++++
T Consensus 83 ~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~ 156 (291)
T 3mkr_A 83 AIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKM 156 (291)
T ss_dssp HHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 9999998764 33566777888999999999999999987 566778888889999999999999999999
Q ss_pred HhhcCCCCCcchH---HHHHHHHhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCC
Q 007519 460 FDVYKIQPGPEHY---VSMINLLGRAGKIKEAEEFVLRLP--FEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPL 534 (600)
Q Consensus 460 ~~~~~~~p~~~~~---~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~ 534 (600)
.+. .|+.... ..++..+...|++++|..+|+++. .+.+...++.+..++. ..|++++|+..++++++.+|+
T Consensus 157 ~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~-~~g~~~eA~~~l~~al~~~p~ 232 (291)
T 3mkr_A 157 QDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHM-AQGRWEAAEGVLQEALDKDSG 232 (291)
T ss_dssp HHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTT
T ss_pred Hhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCC
Confidence 875 4653211 223344556699999999999975 4456778888888888 999999999999999999999
Q ss_pred CCCcHHHHhHHHHhhCCcHHH-HHHHHHHhhc
Q 007519 535 NAPAHVVLCNIYAASGRHVEE-HKLRMDMGLK 565 (600)
Q Consensus 535 ~~~~~~~l~~~~~~~g~~~~A-~~~~~~~~~~ 565 (600)
++.++..++.++...|+.+++ .++++.+.+.
T Consensus 233 ~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 233 HPETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 999999999999999999875 5677666544
No 33
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.71 E-value=8.4e-16 Score=155.26 Aligned_cols=374 Identities=10% Similarity=-0.055 Sum_probs=225.9
Q ss_pred CcccHHHHHHHHHhcCCHhHHHHHHHhccc-----------C-CchhHHHHHHHHHhcCChhHHHHHHccCCC-------
Q 007519 134 NVISWNAMIAGYVECCMMGEAIVLFEEMEE-----------R-NVVTWTSMISGYCRAGEVEEGYCLFRRMPR------- 194 (600)
Q Consensus 134 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----------~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------- 194 (600)
....|+.+..++...|+.++|++.|++..+ | ...+|+.+..+|...|++++|...+++..+
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 456788999999999999999999987652 2 235688889999999999999888876542
Q ss_pred ----CCcchHHHHHHHHHhc--CChhHHHHHHHHHHhhhcCCCCCC-hhhHHHHHHH---HHhcCChhhHHHHhcccC--
Q 007519 195 ----KNVVSWTAMIGGFAWN--GFHKESLLLFIEMKGICDNGNNCN-VQSCNSMING---YIRFGRLEEAQNLFDTVP-- 262 (600)
Q Consensus 195 ----~~~~~~~~li~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~-~~~~~~l~~~---~~~~~~~~~a~~~~~~~~-- 262 (600)
....++..+..++... +++++|+..|++..+. .|+ ...+..+..+ +...++.++|++.+++..
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~-----~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l 204 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEK-----KPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRL 204 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-----STTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHH
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhc
Confidence 1234566666666654 4689999999999876 454 3444444444 345677788888877665
Q ss_pred -CCCchhHHHHHHHHHh----cCChHHHHHHHhhCCC---CChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCh-h
Q 007519 263 -VRDEISWTSMIDGYLS----VGQVSNAYYLFHNMPD---RDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLN-A 333 (600)
Q Consensus 263 -~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~ 333 (600)
+.+..++..+...+.. .|++++|...+++... .+..++..+...|...|++++|+..+++..+. .|+. .
T Consensus 205 ~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~ 282 (472)
T 4g1t_A 205 NPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEY--IPNNAY 282 (472)
T ss_dssp CSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHH
T ss_pred CCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHh--CCChHH
Confidence 4555666666555544 4667888888876543 45667888888899999999999999988875 4443 3
Q ss_pred HHHHHHHHHhcccchhhhHHHHHHHhhhcCCCchhHHHHHHHHHHhcCChHHHHHHHhcCC---CCChhhHHHHHHHHHh
Q 007519 334 TFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMV---SRDLVSWNSMVMGFSH 410 (600)
Q Consensus 334 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~ 410 (600)
.+..+..++...+....... ...........+.++.|...+++.. +.+..++..+...+..
T Consensus 283 ~~~~lg~~y~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~ 346 (472)
T 4g1t_A 283 LHCQIGCCYRAKVFQVMNLR----------------ENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHAL 346 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHC----------------------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHH----------------HHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHH
Confidence 44444434322111110000 0000111112233567777777654 5567788899999999
Q ss_pred cCChHHHHHHHHHHHHcCCCCChh--HHHHHHH-HhcccCchHHHHHHHHHHHhhcCCCCCcchHHHHHHHHhhcCChHH
Q 007519 411 HGLANETLKVFESMLESGTHPNSV--TFLGILS-ACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKE 487 (600)
Q Consensus 411 ~~~~~~a~~~~~~m~~~~~~p~~~--~~~~l~~-~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 487 (600)
.|++++|+..|++..+....|... .+..+.. .....|+.++|+..|+++.+ +.|+....... ...
T Consensus 347 ~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~---i~~~~~~~~~~---------~~~ 414 (472)
T 4g1t_A 347 ADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK---INQKSREKEKM---------KDK 414 (472)
T ss_dssp TTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH---SCCCCHHHHHH---------HHH
T ss_pred hccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCcccHHHHHH---------HHH
Confidence 999999999999998754333221 1222222 23567999999999999885 45654322222 233
Q ss_pred HHHHHHhCC--CCCCHHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCCCcHHHHh
Q 007519 488 AEEFVLRLP--FEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLC 543 (600)
Q Consensus 488 A~~~~~~~~--~~p~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 543 (600)
+.+++++.. .+.+..+|..+...+. ..|++++|+..|++++++.|.+|.+...+|
T Consensus 415 l~~~~~~~l~~~p~~~~~~~~LG~~~~-~~g~~~~A~~~y~kALe~~~~~p~a~~~~G 471 (472)
T 4g1t_A 415 LQKIAKMRLSKNGADSEALHVLAFLQE-LNEKMQQADEDSERGLESGSLIPSASSWNG 471 (472)
T ss_dssp HHHHHHHHHHHCC-CTTHHHHHHHHHH-HHHHCC------------------------
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhcCCCCCcHhhcCC
Confidence 344444332 2345678888888888 999999999999999999998887766554
No 34
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.69 E-value=2.5e-15 Score=143.65 Aligned_cols=274 Identities=10% Similarity=-0.005 Sum_probs=135.1
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHhcCChhhHHHHhcccCCCCchhHHHHHHHHH
Q 007519 198 VSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYL 277 (600)
Q Consensus 198 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~ 277 (600)
..+..+...+...|++++|..+|+++.+. .+.+...+..+..++...|++++|...++.+...
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~------------- 84 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQA----APEREEAWRSLGLTQAENEKDGLAIIALNHARML------------- 84 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------------
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-------------
Confidence 34555666666666666666666666653 1223445555555555555555555555544311
Q ss_pred hcCChHHHHHHHhhCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChh-HHHHHHHHHhcccchhhhHHHHH
Q 007519 278 SVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNA-TFSVLFGAAGATANIDLGRQIHC 356 (600)
Q Consensus 278 ~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~ 356 (600)
...+..++..+...+...|++++|+..++++.+.. |+.. .+..+...+
T Consensus 85 ---------------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~-------------- 133 (327)
T 3cv0_A 85 ---------------DPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQ--PQYEQLGSVNLQAD-------------- 133 (327)
T ss_dssp ---------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--TTTTTC----------------------
T ss_pred ---------------CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CccHHHHHHHhHHH--------------
Confidence 01234455566666666677777777777666542 2222 111110000
Q ss_pred HHhhhcCCCchhHHHHH-HH-HHHhcCChHHHHHHHhcCC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 007519 357 VLMKTESESDLILENCL-IS-MYAKCGVIDNAYNIFSNMV---SRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHP 431 (600)
Q Consensus 357 ~~~~~~~~~~~~~~~~l-~~-~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p 431 (600)
++......+ .. .+...|++++|...++++. +.+...+..+...+...|++++|...++++.+.. +.
T Consensus 134 --------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~ 204 (327)
T 3cv0_A 134 --------VDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PD 204 (327)
T ss_dssp --------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT
T ss_pred --------HHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CC
Confidence 000000011 11 1334444444444444433 2234455555555555555555555555555432 22
Q ss_pred ChhHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHhCC-CCCC---------
Q 007519 432 NSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQP-GPEHYVSMINLLGRAGKIKEAEEFVLRLP-FEPD--------- 500 (600)
Q Consensus 432 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~--------- 500 (600)
+...+..+...+...|++++|...++++.+. .| +...+..++.+|...|++++|.+.++++. ..|+
T Consensus 205 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 281 (327)
T 3cv0_A 205 DAQLWNKLGATLANGNRPQEALDAYNRALDI---NPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEAS 281 (327)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----C
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccch
Confidence 3444555555555566666666666555543 23 34455556666666666666666655542 1222
Q ss_pred ----HHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhC
Q 007519 501 ----HRIWGALLGACGFCEGNAEIAEHAAKRLLELD 532 (600)
Q Consensus 501 ----~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~ 532 (600)
...+..+...+. ..|+.++|...++++++..
T Consensus 282 ~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~l~~~ 316 (327)
T 3cv0_A 282 REATRSMWDFFRMLLN-VMNRPDLVELTYAQNVEPF 316 (327)
T ss_dssp CTHHHHHHHHHHHHHH-HTTCHHHHHHHTTCCSHHH
T ss_pred hhcCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHhc
Confidence 344555555555 6666666666666555533
No 35
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.67 E-value=2.1e-15 Score=134.42 Aligned_cols=194 Identities=15% Similarity=0.078 Sum_probs=156.1
Q ss_pred CCchhHHHHHHHHHHhcCChHHHHHHHhcCC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHH
Q 007519 364 ESDLILENCLISMYAKCGVIDNAYNIFSNMV---SRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGIL 440 (600)
Q Consensus 364 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~ 440 (600)
+++...+..+...+...|++++|...|++.. +.+...|..+..++...|++++|+..|++..+.. +.+...+..+.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg 80 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLS 80 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 3456677788888999999999999998865 5577888999999999999999999999998853 34456777888
Q ss_pred HHhccc-----------CchHHHHHHHHHHHhhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHhCC-CCCCHHHHHHH
Q 007519 441 SACSHA-----------GLVSRGWELFNAMFDVYKIQP-GPEHYVSMINLLGRAGKIKEAEEFVLRLP-FEPDHRIWGAL 507 (600)
Q Consensus 441 ~~~~~~-----------g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l 507 (600)
.++... |++++|...++++.+. .| +...+..++.+|...|++++|++.+++.. ...+...+..+
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l 157 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERV---NPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh---CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHH
Confidence 888888 9999999999999875 67 57889999999999999999999998864 22677888888
Q ss_pred HHHHhhhhCCHHHHHHHHHHHHhhCCCCCCcHHHHhHHHHhhCCcHHHHHHHHHH
Q 007519 508 LGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDM 562 (600)
Q Consensus 508 ~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 562 (600)
...+. ..|++++|+..++++++++|+++.++..++.++...|++++|...++..
T Consensus 158 a~~~~-~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 158 AELYL-SMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHH-HHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC--------------
T ss_pred HHHHH-HcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 88888 9999999999999999999999999999999999999999999977654
No 36
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.63 E-value=2.6e-14 Score=131.34 Aligned_cols=223 Identities=12% Similarity=-0.037 Sum_probs=152.2
Q ss_pred hhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhcccchhhhHHHHHHHhhhcCCCchhHHHHHHHHH
Q 007519 298 VAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMY 377 (600)
Q Consensus 298 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 377 (600)
..|..+...+...|++++|+..|++..+.. .+...+..+..++...|+++.|...+..+.+.....
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~------------ 71 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREM------------ 71 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT------------
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCccc------------
Confidence 355666666677777777777777766654 444444444444445555555544444433321110
Q ss_pred HhcCChHHHHHHHhcCCCCC----hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccCchHHHH
Q 007519 378 AKCGVIDNAYNIFSNMVSRD----LVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGW 453 (600)
Q Consensus 378 ~~~~~~~~A~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~ 453 (600)
.++ ...|..+...+...|++++|...|++.... .|+. ..+...|++++|.
T Consensus 72 -----------------~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~ 125 (258)
T 3uq3_A 72 -----------------RADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKEL 125 (258)
T ss_dssp -----------------TCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHH
T ss_pred -----------------ccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHH
Confidence 011 456667777777888888888888887764 4443 2345567788888
Q ss_pred HHHHHHHhhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHhhhhCCHHHHHHHHHHHHh
Q 007519 454 ELFNAMFDVYKIQP-GPEHYVSMINLLGRAGKIKEAEEFVLRLP--FEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLE 530 (600)
Q Consensus 454 ~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~ 530 (600)
..++++... .| +...+..++..+...|++++|.+.+++.. .+.+...+..+...+. ..|++++|+..++++++
T Consensus 126 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~al~ 201 (258)
T 3uq3_A 126 KKAEAEAYV---NPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALA-KLMSFPEAIADCNKAIE 201 (258)
T ss_dssp HHHHHHHHC---CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHc---CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHH-HhCCHHHHHHHHHHHHH
Confidence 888887753 45 46677888888888888888888888764 3335667777777777 88888888888888888
Q ss_pred hCCCCCCcHHHHhHHHHhhCCcHHHHHHHHHHhh
Q 007519 531 LDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGL 564 (600)
Q Consensus 531 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 564 (600)
..|+++.++..++.++...|++++|...++...+
T Consensus 202 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 235 (258)
T 3uq3_A 202 KDPNFVRAYIRKATAQIAVKEYASALETLDAART 235 (258)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 8888888888888888888888888886666544
No 37
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.62 E-value=1.6e-14 Score=132.69 Aligned_cols=233 Identities=10% Similarity=-0.034 Sum_probs=156.3
Q ss_pred chhHHHHHHHHHhcCChHHHHHHHhhCCC--CChhhHHHHHHHHHhCCChhHHHHHHHHHHHCC--CCCC----hhHHHH
Q 007519 266 EISWTSMIDGYLSVGQVSNAYYLFHNMPD--RDAVAWTAMISGLVQNELFVEATYLFMEMRAHG--VPPL----NATFSV 337 (600)
Q Consensus 266 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g--~~p~----~~~~~~ 337 (600)
...+..+...+...|++++|+..|++..+ .+...|..+...+...|++++|+..+++..+.. ..|+ ...+..
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 45678889999999999999999987543 677889999999999999999999999987742 1112 234444
Q ss_pred HHHHHhcccchhhhHHHHHHHhhhcCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHH
Q 007519 338 LFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANET 417 (600)
Q Consensus 338 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 417 (600)
+..++...|+++.|...+..+.+.. |+ ...+...|++++|
T Consensus 85 l~~~~~~~~~~~~A~~~~~~a~~~~---------------------------------~~-------~~~~~~~~~~~~a 124 (258)
T 3uq3_A 85 IGNAYHKLGDLKKTIEYYQKSLTEH---------------------------------RT-------ADILTKLRNAEKE 124 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC---------------------------------CC-------HHHHHHHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcC---------------------------------ch-------hHHHHHHhHHHHH
Confidence 4444455555555555554444332 22 1234445666677
Q ss_pred HHHHHHHHHcCCCCChhHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHhCC
Q 007519 418 LKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQP-GPEHYVSMINLLGRAGKIKEAEEFVLRLP 496 (600)
Q Consensus 418 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 496 (600)
...++++.... +.+...+..+...+...|++++|...++++.+. .| +...+..++..|...|++++|.+.+++..
T Consensus 125 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al 200 (258)
T 3uq3_A 125 LKKAEAEAYVN-PEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKR---APEDARGYSNRAAALAKLMSFPEAIADCNKAI 200 (258)
T ss_dssp HHHHHHHHHCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcC-cchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc---CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 77777666531 223345556666677777777777777777654 33 46667777777777788888777777653
Q ss_pred -CCC-CHHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhC------CCCCCcHHHHh
Q 007519 497 -FEP-DHRIWGALLGACGFCEGNAEIAEHAAKRLLELD------PLNAPAHVVLC 543 (600)
Q Consensus 497 -~~p-~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~------p~~~~~~~~l~ 543 (600)
..| +...+..+...+. ..|++++|+..+++++++. |++..++..+.
T Consensus 201 ~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~ 254 (258)
T 3uq3_A 201 EKDPNFVRAYIRKATAQI-AVKEYASALETLDAARTKDAEVNNGSSAREIDQLYY 254 (258)
T ss_dssp HHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHH
Confidence 333 4566666777777 7888888888888888877 65555544444
No 38
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.60 E-value=5.3e-16 Score=159.39 Aligned_cols=147 Identities=11% Similarity=0.116 Sum_probs=120.9
Q ss_pred chhHHHHHHHHHhcCChHHHHHHHhhCC-------CCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHH
Q 007519 266 EISWTSMIDGYLSVGQVSNAYYLFHNMP-------DRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVL 338 (600)
Q Consensus 266 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~-------~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 338 (600)
..+|+++|++|++.|++++|..+|++|. .||+.+||+||.+|++.|+.++|.++|++|.+.|+.||..||+++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 3478899999999999999999986653 489999999999999999999999999999999999999999999
Q ss_pred HHHHhcccch-hhhHHHHHHHhhhcCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC-----CChhhHHHHHHHHHhcC
Q 007519 339 FGAAGATANI-DLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVS-----RDLVSWNSMVMGFSHHG 412 (600)
Q Consensus 339 ~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~~~~~~l~~~~~~~~ 412 (600)
|.++++.|.. +.|.+++++|.+.|+.||..+|++++....+.+-++.+.++...+.+ +.+.+...|...|.+.+
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~s~d~ 286 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDG 286 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHHCCCS
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHHHHccCC
Confidence 9999999985 78999999999999999999999999887776555555444443332 12344455666666554
No 39
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.60 E-value=3.2e-14 Score=141.70 Aligned_cols=371 Identities=10% Similarity=0.005 Sum_probs=159.9
Q ss_pred HHHHcCCChhHHHHHhhhcCC-CChhhHHHHHHHHHhcCCh---HHHHHHhhcCCCCCceeHHHHHHHHHHCC-----Ch
Q 007519 50 SGFLQNGRLSEARRLFEEMPE-RNVVSWTAMICGLADAGRV---CEARKLFEEMPERNVVSWNSMVVGLIRNG-----EL 120 (600)
Q Consensus 50 ~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~ 120 (600)
..+.+.|++++|.++|++..+ .++..+..|...|...|+. ++|+..|++..+.++..+..|...+...+ ++
T Consensus 11 ~~~~~~g~~~~A~~~~~~aa~~g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~~~~~ 90 (452)
T 3e4b_A 11 NEALKRGDTVTAQQNYQQLAELGYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGATEAEH 90 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCCTGGGTCC----------------------------CHHHHHHHHHTC--CCHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCcCH
Confidence 333444444444444444433 2333334444444444444 45555555444444444444444333333 44
Q ss_pred hHHHHHhhcCCC-CCcccHHHHHHHHHhcCCHhH---HHHHHHhcc-cCCchhHHHHHHHHHhcCCh----hHHHHHHcc
Q 007519 121 NEARKVFNSMPI-KNVISWNAMIAGYVECCMMGE---AIVLFEEME-ERNVVTWTSMISGYCRAGEV----EEGYCLFRR 191 (600)
Q Consensus 121 ~~a~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~---A~~~~~~~~-~~~~~~~~~l~~~~~~~g~~----~~A~~~~~~ 191 (600)
++|++.|++... .++..+..|...|...+..+. +.+.+.... ..++.....+...|...+.+ +.+..+++.
T Consensus 91 ~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~ 170 (452)
T 3e4b_A 91 HEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQHLDDVERICKA 170 (452)
T ss_dssp HHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHH
Confidence 455555544433 233344445555444433322 222222222 23455566666666666633 344445555
Q ss_pred CCCCCcchHHHHHHHHHhcC---ChhHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHhc----CChhhHHHHhcccCCC
Q 007519 192 MPRKNVVSWTAMIGGFAWNG---FHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRF----GRLEEAQNLFDTVPVR 264 (600)
Q Consensus 192 ~~~~~~~~~~~li~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~ 264 (600)
....++.++..+...|...| +.++|+..|+...+. | +++...+..+...|... +++++|..+|+...+.
T Consensus 171 a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~---g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~g 246 (452)
T 3e4b_A 171 ALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSR---G-TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIAPG 246 (452)
T ss_dssp HTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT---T-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHGGG
T ss_pred HHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHC---C-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHcCC
Confidence 55555557777777777777 777777777777754 2 33444445555555433 4666666666655432
Q ss_pred CchhHHHHHHHHHhcCChHHHHHHHhhCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhc
Q 007519 265 DEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGA 344 (600)
Q Consensus 265 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 344 (600)
++..+..+...|.. ....+++++|+..|++..+.| +...+..+...|.
T Consensus 247 ~~~a~~~Lg~~~~~----------------------------~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~- 294 (452)
T 3e4b_A 247 YPASWVSLAQLLYD----------------------------FPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY- 294 (452)
T ss_dssp STHHHHHHHHHHHH----------------------------SGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-
T ss_pred CHHHHHHHHHHHHh----------------------------CCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-
Confidence 33344444333110 023455666666666655544 2223333333222
Q ss_pred cc-----chhhhHHHHHHHhhhcCCCchhHHHHHHHHHHh----cCChHHHHHHHhcCC-CCChhhHHHHHHHHHh----
Q 007519 345 TA-----NIDLGRQIHCVLMKTESESDLILENCLISMYAK----CGVIDNAYNIFSNMV-SRDLVSWNSMVMGFSH---- 410 (600)
Q Consensus 345 ~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~-~~~~~~~~~l~~~~~~---- 410 (600)
.| +.++|...+.... . .++.....|...|.. ..++++|...|++.. ..+......+...|..
T Consensus 295 ~G~g~~~d~~~A~~~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~ 370 (452)
T 3e4b_A 295 EGKWVPADAKAAEAHFEKAV-G---REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADFAIAQLFSQGKGT 370 (452)
T ss_dssp HCSSSCCCHHHHHHHHHTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHHHHHHHHHHSCTTB
T ss_pred cCCCCCCCHHHHHHHHHHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHHHHHHHHHHhCCCC
Confidence 22 4444444444333 1 122333333333333 224555555555443 2233344444444432
Q ss_pred cCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccCchHHHHHHHHHHHh
Q 007519 411 HGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFD 461 (600)
Q Consensus 411 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 461 (600)
..+..+|..+|+...+.| .++.......+......++..+|.++.++..+
T Consensus 371 ~~d~~~A~~~~~~A~~~g-~~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~ 420 (452)
T 3e4b_A 371 KPDPLNAYVFSQLAKAQD-TPEANDLATQLEAPLTPAQRAEGQRLVQQELA 420 (452)
T ss_dssp CCCHHHHHHHHHHHHTTC-CHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 235556666666655554 22222222222333334455555555554443
No 40
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.60 E-value=4.5e-14 Score=130.97 Aligned_cols=242 Identities=14% Similarity=0.032 Sum_probs=132.6
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhcccchhhhHHHHHHHhhhcCCCc--hhHHHHHHHHHHhc
Q 007519 303 MISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESD--LILENCLISMYAKC 380 (600)
Q Consensus 303 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~ 380 (600)
....+...|++++|+..|++..+.. +.+...+..+..++...|+++.|...+..+.+....++ ...+..+...+...
T Consensus 9 ~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~ 87 (272)
T 3u4t_A 9 YADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKK 87 (272)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHc
Confidence 3344444455555555555444431 11222444444444455555555555554444221111 12245555566666
Q ss_pred CChHHHHHHHhcCC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccCchHHHHHHHH
Q 007519 381 GVIDNAYNIFSNMV---SRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFN 457 (600)
Q Consensus 381 ~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 457 (600)
|++++|...|++.. +.+..+|..+...+...|++++|+..|++..+. .+.+...+..+...+...+++++|.+.++
T Consensus 88 ~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 166 (272)
T 3u4t_A 88 GQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP-TTTDPKVFYELGQAYYYNKEYVKADSSFV 166 (272)
T ss_dssp TCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS-SCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc-CCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666665554 334456666666666666666666666666543 12233344444413333447777777777
Q ss_pred HHHhhcCCCC-CcchHHHHHHHHhhcCC---hHHHHHHHHhCC----CCCC------HHHHHHHHHHHhhhhCCHHHHHH
Q 007519 458 AMFDVYKIQP-GPEHYVSMINLLGRAGK---IKEAEEFVLRLP----FEPD------HRIWGALLGACGFCEGNAEIAEH 523 (600)
Q Consensus 458 ~~~~~~~~~p-~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~----~~p~------~~~~~~l~~~~~~~~g~~~~a~~ 523 (600)
++.+. .| +...+..++.++...|+ +++|...+++.. ..|+ ...+..+...+. ..|++++|+.
T Consensus 167 ~a~~~---~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~ 242 (272)
T 3u4t_A 167 KVLEL---KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYT-INRDKVKADA 242 (272)
T ss_dssp HHHHH---STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHh---CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHH-HcCCHHHHHH
Confidence 66653 34 34556666666666666 555666555542 1232 135566666777 8999999999
Q ss_pred HHHHHHhhCCCCCCcHHHHhHHHHhhC
Q 007519 524 AAKRLLELDPLNAPAHVVLCNIYAASG 550 (600)
Q Consensus 524 ~~~~~~~~~p~~~~~~~~l~~~~~~~g 550 (600)
.++++++++|+++.+...+.......+
T Consensus 243 ~~~~al~~~p~~~~a~~~l~~~~~~~~ 269 (272)
T 3u4t_A 243 AWKNILALDPTNKKAIDGLKMKLEHHH 269 (272)
T ss_dssp HHHHHHHHCTTCHHHHHHHC-------
T ss_pred HHHHHHhcCccHHHHHHHhhhhhcccc
Confidence 999999999988888888877766554
No 41
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.59 E-value=1e-13 Score=128.77 Aligned_cols=241 Identities=9% Similarity=-0.098 Sum_probs=181.8
Q ss_pred hCCChhHHHHHHHHHHHCCCCC---ChhHHHHHHHHHhcccchhhhHHHHHHHhhhcCCCchhHHHHHHHHHHhcCChHH
Q 007519 309 QNELFVEATYLFMEMRAHGVPP---LNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDN 385 (600)
Q Consensus 309 ~~g~~~~a~~~~~~m~~~g~~p---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 385 (600)
..|++++|+..|+++.+..... +...+..+...+...|+++.|...++.+.+.... +...+..+...+...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHccCHHH
Confidence 3467777888888777653211 2345666667777788888888888877765433 56777888888999999999
Q ss_pred HHHHHhcCC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccCchHHHHHHHHHHHhh
Q 007519 386 AYNIFSNMV---SRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDV 462 (600)
Q Consensus 386 A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 462 (600)
|...|+++. +.+...+..+...+...|++++|...|+++.+. .|+.......+..+...|++++|...+++....
T Consensus 96 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 96 AYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 999998876 456788999999999999999999999999885 566555555555667789999999999888765
Q ss_pred cCCCCCcchHHHHHHHHhhcCChHHHHHHHHhCC-CCCC-----HHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCC
Q 007519 463 YKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLP-FEPD-----HRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNA 536 (600)
Q Consensus 463 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-----~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 536 (600)
.|+......++..+...++.++|.+.+++.. ..|+ ...+..+...+. ..|++++|+..++++++.+|++.
T Consensus 174 ---~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~p~~~ 249 (275)
T 1xnf_A 174 ---SDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYL-SLGDLDSATALFKLAVANNVHNF 249 (275)
T ss_dssp ---SCCCSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCCTTC
T ss_pred ---CCcchHHHHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHH-HcCCHHHHHHHHHHHHhCCchhH
Confidence 3433333457778888899999999998864 3332 456777777888 99999999999999999999664
Q ss_pred CcHHHHhHHHHhhCCcHHHHHHH
Q 007519 537 PAHVVLCNIYAASGRHVEEHKLR 559 (600)
Q Consensus 537 ~~~~~l~~~~~~~g~~~~A~~~~ 559 (600)
.. .+.++...|++++|.+-+
T Consensus 250 ~~---~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 250 VE---HRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HH---HHHHHHHHHHHHHC----
T ss_pred HH---HHHHHHHHHHHHhhHHHH
Confidence 43 466788899999998754
No 42
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.58 E-value=1.8e-13 Score=136.34 Aligned_cols=374 Identities=7% Similarity=-0.056 Sum_probs=175.4
Q ss_pred HHHHHHhcCChhHHHHHHccCCC-CCcchHHHHHHHHHhcCCh---hHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHh
Q 007519 172 MISGYCRAGEVEEGYCLFRRMPR-KNVVSWTAMIGGFAWNGFH---KESLLLFIEMKGICDNGNNCNVQSCNSMINGYIR 247 (600)
Q Consensus 172 l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 247 (600)
+...+.+.|++++|.+.|++..+ .+..++..+...+...|+. ++|+..|++..+ . +...+..+...+..
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~----~---~~~A~~~Lg~~~~~ 81 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELGYSEAQVGLADIQVGTRDPAQIKQAEATYRAAAD----T---SPRAQARLGRLLAA 81 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCCTGGGTCC-----------------------------------CHHHHHHHHHT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHh----C---CHHHHHHHHHHHHh
Confidence 45556666777777777766543 3445555566666666666 666666666653 1 34444455553444
Q ss_pred cC-----ChhhHHHHhcccC-CCCchhHHHHHHHHHhcCChHHH---HHHHhhCCC-CChhhHHHHHHHHHhCCChhHHH
Q 007519 248 FG-----RLEEAQNLFDTVP-VRDEISWTSMIDGYLSVGQVSNA---YYLFHNMPD-RDAVAWTAMISGLVQNELFVEAT 317 (600)
Q Consensus 248 ~~-----~~~~a~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A---~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~a~ 317 (600)
.+ ++++|..+|++.. ..++..+..|...|...+..+++ .+.+..... .+...+..+...|...+.++++.
T Consensus 82 ~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~~~ 161 (452)
T 3e4b_A 82 KPGATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQHL 161 (452)
T ss_dssp C--CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGGGH
T ss_pred CCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcccCH
Confidence 33 5566666666655 23344556666666554443332 222222221 34455555666666666554444
Q ss_pred HHHHHHHHCCCCCChhHHHHHHHHHhccc---chhhhHHHHHHHhhhcCCCchhHHHHHHHHHHhc----CChHHHHHHH
Q 007519 318 YLFMEMRAHGVPPLNATFSVLFGAAGATA---NIDLGRQIHCVLMKTESESDLILENCLISMYAKC----GVIDNAYNIF 390 (600)
Q Consensus 318 ~~~~~m~~~g~~p~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~A~~~~ 390 (600)
.....+.+.-...+...+..+...+...| +.++|...+....+.|... ...+..+...|... +++++|...|
T Consensus 162 ~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~-a~~~~~Lg~~y~~g~~~~~d~~~A~~~~ 240 (452)
T 3e4b_A 162 DDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVT-AQRVDSVARVLGDATLGTPDEKTAQALL 240 (452)
T ss_dssp HHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSC-HHHHHHHHHHHTCGGGSSCCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHH-HHHHHHHHHHHhCCCCCCCCHHHHHHHH
Confidence 44333322212222335555555555566 6666666666666655432 22223344444333 5666666666
Q ss_pred hcCCCCChhhHHHHHHH-H--HhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccC-----chHHHHHHHHHHHhh
Q 007519 391 SNMVSRDLVSWNSMVMG-F--SHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAG-----LVSRGWELFNAMFDV 462 (600)
Q Consensus 391 ~~~~~~~~~~~~~l~~~-~--~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g-----~~~~a~~~~~~~~~~ 462 (600)
++..+.+...+..+... + ...+++++|+..|++..+.| +...+..+...|. .| ++++|.++|++..
T Consensus 241 ~~aa~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-- 314 (452)
T 3e4b_A 241 EKIAPGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-- 314 (452)
T ss_dssp HHHGGGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT--
T ss_pred HHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh--
Confidence 66553345555555555 3 34566666666666666554 3344444444443 33 6666666666553
Q ss_pred cCCCCCcchHHHHHHHHhh----cCChHHHHHHHHhCCCCCCHHHHHHHHHHHhh---hhCCHHHHHHHHHHHHhhCCCC
Q 007519 463 YKIQPGPEHYVSMINLLGR----AGKIKEAEEFVLRLPFEPDHRIWGALLGACGF---CEGNAEIAEHAAKRLLELDPLN 535 (600)
Q Consensus 463 ~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~---~~g~~~~a~~~~~~~~~~~p~~ 535 (600)
.-++..+..|+..|.. ..++++|.++|++.-...+......+...|.. ..+|..+|...++++.+..+..
T Consensus 315 ---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~~ 391 (452)
T 3e4b_A 315 ---GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTPE 391 (452)
T ss_dssp ---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCHH
T ss_pred ---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCHH
Confidence 1244555556655554 23666666666665322233333444444331 1236666666666666654422
Q ss_pred CCcHHHHhHHHHhhCCcHHHHHHHHHH
Q 007519 536 APAHVVLCNIYAASGRHVEEHKLRMDM 562 (600)
Q Consensus 536 ~~~~~~l~~~~~~~g~~~~A~~~~~~~ 562 (600)
.......+......++.++|.++.+..
T Consensus 392 a~~~l~~l~~~~~~~~~~~a~~~~~~~ 418 (452)
T 3e4b_A 392 ANDLATQLEAPLTPAQRAEGQRLVQQE 418 (452)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 222222222222334555555544433
No 43
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.58 E-value=1.5e-15 Score=156.10 Aligned_cols=112 Identities=10% Similarity=0.084 Sum_probs=53.8
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhcCC-------CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHH
Q 007519 368 ILENCLISMYAKCGVIDNAYNIFSNMV-------SRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGIL 440 (600)
Q Consensus 368 ~~~~~l~~~~~~~~~~~~A~~~~~~~~-------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~ 440 (600)
.+|+++|++|++.|++++|..+|.+|. .||+.+||+||.+|++.|++++|.++|++|.+.|+.||..||+++|
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI 207 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAAL 207 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 344444444444444444444443321 3444555555555555555555555555555555555555555555
Q ss_pred HHhcccCch-HHHHHHHHHHHhhcCCCCCcchHHHHHHHHh
Q 007519 441 SACSHAGLV-SRGWELFNAMFDVYKIQPGPEHYVSMINLLG 480 (600)
Q Consensus 441 ~~~~~~g~~-~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 480 (600)
.++++.|+. ++|.++|++|.+. |+.||..+|++++....
T Consensus 208 ~glcK~G~~~e~A~~Ll~EM~~k-G~~PD~vtY~~ll~~~e 247 (1134)
T 3spa_A 208 QCMGRQDQDAGTIERCLEQMSQE-GLKLQALFTAVLLSEED 247 (1134)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHH-TCCSHHHHHHSCCCHHH
T ss_pred HHHHhCCCcHHHHHHHHHHHHHc-CCCCChhhcccccChhh
Confidence 555554442 3444555555444 45555555554444333
No 44
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.56 E-value=4.4e-13 Score=129.24 Aligned_cols=244 Identities=10% Similarity=0.055 Sum_probs=184.8
Q ss_pred hhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC-hhHHHHHHHHHhcccc-hhhhHHHHHHHhhhcCCCchhHHHHHHH
Q 007519 298 VAWTAMISGLVQNELFVEATYLFMEMRAHGVPPL-NATFSVLFGAAGATAN-IDLGRQIHCVLMKTESESDLILENCLIS 375 (600)
Q Consensus 298 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 375 (600)
.+|+.+...+...|++++|+..+++.++. .|+ ...|..+..++...|+ +++|...++.+.+.... +...|..+..
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l--~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~g~ 174 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIEL--NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHh--CccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHHHH
Confidence 45666666777777777777777777764 343 4455666666777775 77777777777765544 5667778888
Q ss_pred HHHhcCChHHHHHHHhcCC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcc-cCchHH
Q 007519 376 MYAKCGVIDNAYNIFSNMV---SRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSH-AGLVSR 451 (600)
Q Consensus 376 ~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~-~g~~~~ 451 (600)
++...|++++|+..|+++. +.+...|..+..++...|++++|+..++++.+.. +-+...|..+..++.. .|..++
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~e 253 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDR 253 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSH
T ss_pred HHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcchH
Confidence 8888899999999988876 5677889999999999999999999999998863 3456778888888877 566577
Q ss_pred H-----HHHHHHHHhhcCCCC-CcchHHHHHHHHhhcC--ChHHHHHHHHhCCCCCC-HHHHHHHHHHHhhhhC------
Q 007519 452 G-----WELFNAMFDVYKIQP-GPEHYVSMINLLGRAG--KIKEAEEFVLRLPFEPD-HRIWGALLGACGFCEG------ 516 (600)
Q Consensus 452 a-----~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~p~-~~~~~~l~~~~~~~~g------ 516 (600)
| ++.+++++.. .| +...|..+..+|...| ++++|.+.+.++...|+ ...+..+...+. ..|
T Consensus 254 A~~~~el~~~~~Al~l---~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~-~~~~~~~~~ 329 (382)
T 2h6f_A 254 AVLEREVQYTLEMIKL---VPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYE-DMLENQCDN 329 (382)
T ss_dssp HHHHHHHHHHHHHHHH---STTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHH-HHHHTTCSS
T ss_pred HHHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHH-HHhcccccc
Confidence 7 5888888764 67 5778889999999888 68999999888765554 456677777776 653
Q ss_pred --C-HHHHHHHHHHH-HhhCCCCCCcHHHHhHHHHhh
Q 007519 517 --N-AEIAEHAAKRL-LELDPLNAPAHVVLCNIYAAS 549 (600)
Q Consensus 517 --~-~~~a~~~~~~~-~~~~p~~~~~~~~l~~~~~~~ 549 (600)
+ .++|+.+++++ ++++|.....|..++..+...
T Consensus 330 ~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 330 KEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp HHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 3 58999999999 899998888888887776544
No 45
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.54 E-value=3.9e-13 Score=123.04 Aligned_cols=195 Identities=8% Similarity=-0.050 Sum_probs=127.6
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhcCC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhc
Q 007519 368 ILENCLISMYAKCGVIDNAYNIFSNMV---SRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACS 444 (600)
Q Consensus 368 ~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~ 444 (600)
..+..+...+...|++++|...|+++. +.+...+..+...+...|++++|.+.++++.+.. +.+...+..+...+.
T Consensus 38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~ 116 (252)
T 2ho1_A 38 DAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFLY 116 (252)
T ss_dssp HHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHH
Confidence 444555666666666666666666654 3455666666777777777777777777766642 334556666666677
Q ss_pred ccCchHHHHHHHHHHHhhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHhhhhCCHHHH
Q 007519 445 HAGLVSRGWELFNAMFDVYKIQP-GPEHYVSMINLLGRAGKIKEAEEFVLRLP-FEP-DHRIWGALLGACGFCEGNAEIA 521 (600)
Q Consensus 445 ~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~g~~~~a 521 (600)
..|++++|.++++++.+ .+..| +...+..++..|...|++++|.+.++++. ..| +...+..+...+. ..|++++|
T Consensus 117 ~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A 194 (252)
T 2ho1_A 117 EQKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLY-KEREYVPA 194 (252)
T ss_dssp HTTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHH-HTTCHHHH
T ss_pred HHhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHH-HcCCHHHH
Confidence 77777777777777665 12344 35566667777777777777777776653 223 4555666666666 77777777
Q ss_pred HHHHHHHHhhCCCCCCcHHHHhHHHHhhCCcHHHHHHHHHHhhc
Q 007519 522 EHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLK 565 (600)
Q Consensus 522 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 565 (600)
+..++++++..|+++..+..++.++...|++++|.++++.+.+.
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 195 RQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 77777777777766677777777777777777777766665544
No 46
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.54 E-value=5.5e-13 Score=119.55 Aligned_cols=197 Identities=11% Similarity=0.025 Sum_probs=141.0
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHhcCC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHH
Q 007519 366 DLILENCLISMYAKCGVIDNAYNIFSNMV---SRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSA 442 (600)
Q Consensus 366 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 442 (600)
+...+..+...+...|++++|...|+++. +.+...+..+...+...|++++|...++++.... +.+...+..+...
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~ 85 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 34455666667777777777777777654 3456677777777778888888888888777652 3455666777777
Q ss_pred hccc-CchHHHHHHHHHHHhhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHhhhhCCH
Q 007519 443 CSHA-GLVSRGWELFNAMFDVYKIQP-GPEHYVSMINLLGRAGKIKEAEEFVLRLP-FEP-DHRIWGALLGACGFCEGNA 518 (600)
Q Consensus 443 ~~~~-g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~g~~ 518 (600)
+... |++++|...++++.+ .+..| +...+..++..+...|++++|.+.++++. ..| +...+..+...+. ..|++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~-~~~~~ 163 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKM-LAGQL 163 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH-HHTCH
T ss_pred HHHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHH-HcCCH
Confidence 7777 888888888887776 23334 25667777788888888888888877753 333 4566666666777 78888
Q ss_pred HHHHHHHHHHHhhCC-CCCCcHHHHhHHHHhhCCcHHHHHHHHHHhhc
Q 007519 519 EIAEHAAKRLLELDP-LNAPAHVVLCNIYAASGRHVEEHKLRMDMGLK 565 (600)
Q Consensus 519 ~~a~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 565 (600)
++|+..++++++..| +++..+..++..+...|+.++|..+++.+.+.
T Consensus 164 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 164 GDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 888888888888887 77777777777777888888888777776544
No 47
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.54 E-value=4.4e-13 Score=119.25 Aligned_cols=110 Identities=12% Similarity=0.095 Sum_probs=59.8
Q ss_pred CChHHHHHHHhcCC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccCchHHHHHHHH
Q 007519 381 GVIDNAYNIFSNMV---SRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFN 457 (600)
Q Consensus 381 ~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 457 (600)
|++++|...|++.. +.+...|..+..++...|++++|+..|++..+.. .+...+..+..++...|++++|...|+
T Consensus 98 g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~ 175 (217)
T 2pl2_A 98 GYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQYA 175 (217)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 66666666665554 3345566666666666666666666666666654 455556666666666666666666666
Q ss_pred HHHhhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHhC
Q 007519 458 AMFDVYKIQP-GPEHYVSMINLLGRAGKIKEAEEFVLRL 495 (600)
Q Consensus 458 ~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 495 (600)
++.+. .| +...+..++.++...|++++|.+.+++.
T Consensus 176 ~al~~---~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 176 KALEQ---APKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHH---STTCHHHHHHHHHHHTC--------------
T ss_pred HHHHh---CCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 66653 44 3555666666666666666666666553
No 48
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.53 E-value=2e-13 Score=124.16 Aligned_cols=175 Identities=11% Similarity=0.063 Sum_probs=106.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhcCC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcc
Q 007519 369 LENCLISMYAKCGVIDNAYNIFSNMV---SRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSH 445 (600)
Q Consensus 369 ~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 445 (600)
.+..+...+...|++++|...++++. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+..
T Consensus 59 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~ 137 (243)
T 2q7f_A 59 PYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVK 137 (243)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 34444455555555555555555443 3345556666666667777777777777766642 3345556666666677
Q ss_pred cCchHHHHHHHHHHHhhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHhCC-C-CCCHHHHHHHHHHHhhhhCCHHHHH
Q 007519 446 AGLVSRGWELFNAMFDVYKIQP-GPEHYVSMINLLGRAGKIKEAEEFVLRLP-F-EPDHRIWGALLGACGFCEGNAEIAE 522 (600)
Q Consensus 446 ~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~p~~~~~~~l~~~~~~~~g~~~~a~ 522 (600)
.|++++|...++++.+. .| +...+..++..+...|++++|.+.++++. . +.+..++..+...+. ..|++++|+
T Consensus 138 ~~~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~-~~~~~~~A~ 213 (243)
T 2q7f_A 138 LEQPKLALPYLQRAVEL---NENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYA-YKENREKAL 213 (243)
T ss_dssp TSCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCTTHHH
T ss_pred hccHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH-HccCHHHHH
Confidence 77777777777776653 23 45566667777777777777777776653 2 234555666666666 777777777
Q ss_pred HHHHHHHhhCCCCCCcHHHHhHHHHh
Q 007519 523 HAAKRLLELDPLNAPAHVVLCNIYAA 548 (600)
Q Consensus 523 ~~~~~~~~~~p~~~~~~~~l~~~~~~ 548 (600)
..++++++..|+++.++..+......
T Consensus 214 ~~~~~~~~~~p~~~~~~~~~~~l~~~ 239 (243)
T 2q7f_A 214 EMLDKAIDIQPDHMLALHAKKLLGHH 239 (243)
T ss_dssp HHHHHHHHHCTTCHHHHHHHTC----
T ss_pred HHHHHHHccCcchHHHHHHHHHHHhh
Confidence 77777777777666666655554433
No 49
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.52 E-value=1.4e-12 Score=120.80 Aligned_cols=233 Identities=9% Similarity=-0.003 Sum_probs=174.4
Q ss_pred hHHHHHHHHHhcCChHHHHHHHhhCCC---CChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCh--hHHHHHHHHH
Q 007519 268 SWTSMIDGYLSVGQVSNAYYLFHNMPD---RDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLN--ATFSVLFGAA 342 (600)
Q Consensus 268 ~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~--~~~~~l~~~~ 342 (600)
.+......+...|++++|+..|++..+ .+...+..+...+...|++++|+..+++..+.+..|+. ..+..+...+
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~ 84 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKIL 84 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence 445556667777777777777776543 34557777888888888888888888888774322221 2367777788
Q ss_pred hcccchhhhHHHHHHHhhhcCCCchhHHHHHHHHHHhcCChHHHHHHHhcCC---CCChhhHHHHHHHHHhcCChHHHHH
Q 007519 343 GATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMV---SRDLVSWNSMVMGFSHHGLANETLK 419 (600)
Q Consensus 343 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~ 419 (600)
...|+++.|...++.+.+.... +..++..+...|...|++++|...|++.. +.+...|..+...+...+++++|+.
T Consensus 85 ~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 163 (272)
T 3u4t_A 85 MKKGQDSLAIQQYQAAVDRDTT-RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADS 163 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHcccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888887776543 56778889999999999999999999887 4466777777734445569999999
Q ss_pred HHHHHHHcCCCCChhHHHHHHHHhcccCc---hHHHHHHHHHHHhhcCCCCCc------chHHHHHHHHhhcCChHHHHH
Q 007519 420 VFESMLESGTHPNSVTFLGILSACSHAGL---VSRGWELFNAMFDVYKIQPGP------EHYVSMINLLGRAGKIKEAEE 490 (600)
Q Consensus 420 ~~~~m~~~~~~p~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~p~~------~~~~~l~~~~~~~g~~~~A~~ 490 (600)
.|+++.+.. +.+...+..+..++...|+ +++|...++++.+...-.|+. .++..++..|...|++++|.+
T Consensus 164 ~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 242 (272)
T 3u4t_A 164 SFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADA 242 (272)
T ss_dssp HHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 999998852 3345667777777777787 888999999888764334542 578889999999999999999
Q ss_pred HHHhCC-CCCCHH
Q 007519 491 FVLRLP-FEPDHR 502 (600)
Q Consensus 491 ~~~~~~-~~p~~~ 502 (600)
.+++.. ..|+..
T Consensus 243 ~~~~al~~~p~~~ 255 (272)
T 3u4t_A 243 AWKNILALDPTNK 255 (272)
T ss_dssp HHHHHHHHCTTCH
T ss_pred HHHHHHhcCccHH
Confidence 998874 556543
No 50
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.51 E-value=2.5e-13 Score=123.49 Aligned_cols=196 Identities=13% Similarity=0.091 Sum_probs=153.4
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHhcCC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHH
Q 007519 366 DLILENCLISMYAKCGVIDNAYNIFSNMV---SRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSA 442 (600)
Q Consensus 366 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 442 (600)
....+..+...+...|++++|...|+++. +.+...+..+...+...|++++|+..++++.+.. +.+...+..+...
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 100 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNV 100 (243)
T ss_dssp --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHH
Confidence 45566677778888899999988888775 4567888899999999999999999999998863 4466778888899
Q ss_pred hcccCchHHHHHHHHHHHhhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHhCC-C-CCCHHHHHHHHHHHhhhhCCHH
Q 007519 443 CSHAGLVSRGWELFNAMFDVYKIQP-GPEHYVSMINLLGRAGKIKEAEEFVLRLP-F-EPDHRIWGALLGACGFCEGNAE 519 (600)
Q Consensus 443 ~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~p~~~~~~~l~~~~~~~~g~~~ 519 (600)
+...|++++|.+.++++.+. .| +...+..++..+...|++++|.+.++++. . +.+...+..+...+. ..|+++
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~ 176 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRA---GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLA-NEGMLD 176 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCCH
T ss_pred HHHhccHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHH-HcCCHH
Confidence 99999999999999999875 34 57788999999999999999999998874 3 345677888888888 999999
Q ss_pred HHHHHHHHHHhhCCCCCCcHHHHhHHHHhhCCcHHHHHHHHHHhhcC
Q 007519 520 IAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKG 566 (600)
Q Consensus 520 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 566 (600)
+|+..++++++..|+++.++..++.++...|++++|.+.++...+..
T Consensus 177 ~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 177 EALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 99999999999999999999999999999999999999887776543
No 51
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.51 E-value=3.9e-12 Score=117.85 Aligned_cols=223 Identities=10% Similarity=-0.071 Sum_probs=114.5
Q ss_pred ChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhc----ccchhhhHHHHHHHhhhcCCCchhHHH
Q 007519 296 DAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGA----TANIDLGRQIHCVLMKTESESDLILEN 371 (600)
Q Consensus 296 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 371 (600)
+..++..+...+...|++++|+..|++..+. .+...+..+...+.. .+++++|...++...+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 4566777777888888888888888887773 233445555555555 666666666666555543 334444
Q ss_pred HHHHHHHh----cCChHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcc--
Q 007519 372 CLISMYAK----CGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSH-- 445 (600)
Q Consensus 372 ~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~-- 445 (600)
.+...|.. .+++++|...| ++..+.+ +...+..+...|..
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~-------------------------------~~a~~~~---~~~a~~~lg~~~~~~~ 124 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYY-------------------------------SKACDLK---YAEGCASLGGIYHDGK 124 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHH-------------------------------HHHHHTT---CHHHHHHHHHHHHHCS
T ss_pred HHHHHHhCCCCcccCHHHHHHHH-------------------------------HHHHHcC---CccHHHHHHHHHHcCC
Confidence 44444444 45555555544 4444432 33333444444444
Q ss_pred --cCchHHHHHHHHHHHhhcCCCCCcchHHHHHHHHhh----cCChHHHHHHHHhCCCCCCHHHHHHHHHHHhhh----h
Q 007519 446 --AGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGR----AGKIKEAEEFVLRLPFEPDHRIWGALLGACGFC----E 515 (600)
Q Consensus 446 --~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~----~ 515 (600)
.+++++|.+.++++.+. + +...+..++..|.. .+++++|.+.+++.....+...+..+...+. . .
T Consensus 125 ~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~-~g~~~~ 199 (273)
T 1ouv_A 125 VVTRDFKKAVEYFTKACDL-N---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYH-HGEGAT 199 (273)
T ss_dssp SSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HTCSSC
T ss_pred CcccCHHHHHHHHHHHHhc-C---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-cCCCCC
Confidence 44555555555544432 1 23344444444444 4555555555544321123334444444444 4 4
Q ss_pred CCHHHHHHHHHHHHhhCCCCCCcHHHHhHHHHh----hCCcHHHHHHHHHHhhc
Q 007519 516 GNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAA----SGRHVEEHKLRMDMGLK 565 (600)
Q Consensus 516 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~ 565 (600)
+++++|+..++++.+..| +..+..++.+|.. .|++++|.++++...+.
T Consensus 200 ~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~ 251 (273)
T 1ouv_A 200 KNFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKL 251 (273)
T ss_dssp CCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHc
Confidence 555555555555555433 3444555555555 55555555544444433
No 52
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.51 E-value=5.3e-12 Score=117.00 Aligned_cols=230 Identities=10% Similarity=-0.057 Sum_probs=158.4
Q ss_pred CCchhHHHHHHHHHhcCChHHHHHHHhhCCCC-ChhhHHHHHHHHHh----CCChhHHHHHHHHHHHCCCCCChhHHHHH
Q 007519 264 RDEISWTSMIDGYLSVGQVSNAYYLFHNMPDR-DAVAWTAMISGLVQ----NELFVEATYLFMEMRAHGVPPLNATFSVL 338 (600)
Q Consensus 264 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 338 (600)
.++.++..+...+...|++++|+..|++..++ +..++..+...|.. .+++++|+..|++..+.+ +...+..+
T Consensus 4 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 80 (273)
T 1ouv_A 4 QDPKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLL 80 (273)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHH
Confidence 46677888999999999999999999987664 56788889999999 999999999999999875 67778888
Q ss_pred HHHHhc----ccchhhhHHHHHHHhhhcCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHhcCCh
Q 007519 339 FGAAGA----TANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLA 414 (600)
Q Consensus 339 ~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 414 (600)
...+.. .++.++|...++...+.+ +...+..+...|... ....+++
T Consensus 81 g~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~---------------------------~~~~~~~ 130 (273)
T 1ouv_A 81 GNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDG---------------------------KVVTRDF 130 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHC---------------------------SSSCCCH
T ss_pred HHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcC---------------------------CCcccCH
Confidence 888888 999999999999877654 344444444444440 0004555
Q ss_pred HHHHHHHHHHHHcCCCCChhHHHHHHHHhcc----cCchHHHHHHHHHHHhhcCCCCCcchHHHHHHHHhh----cCChH
Q 007519 415 NETLKVFESMLESGTHPNSVTFLGILSACSH----AGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGR----AGKIK 486 (600)
Q Consensus 415 ~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~ 486 (600)
++|+..|++..+.+ +...+..+...+.. .+++++|...+++..+. .++..+..++.+|.. .++++
T Consensus 131 ~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~~~~~~~ 203 (273)
T 1ouv_A 131 KKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL----KDSPGCFNAGNMYHHGEGATKNFK 203 (273)
T ss_dssp HHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTCSSCCCHH
T ss_pred HHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCccHH
Confidence 55555555555543 33344444444544 66666666666666653 134556666666666 77777
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHhhh----hCCHHHHHHHHHHHHhhCCC
Q 007519 487 EAEEFVLRLPFEPDHRIWGALLGACGFC----EGNAEIAEHAAKRLLELDPL 534 (600)
Q Consensus 487 ~A~~~~~~~~~~p~~~~~~~l~~~~~~~----~g~~~~a~~~~~~~~~~~p~ 534 (600)
+|.+.+++.....+...+..+...+. . .++.++|+..++++.+..|+
T Consensus 204 ~A~~~~~~a~~~~~~~a~~~l~~~~~-~g~~~~~~~~~A~~~~~~a~~~~~~ 254 (273)
T 1ouv_A 204 EALARYSKACELENGGGCFNLGAMQY-NGEGVTRNEKQAIENFKKGCKLGAK 254 (273)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH-TTSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHH-cCCCcccCHHHHHHHHHHHHHcCCH
Confidence 77777766532222455555666665 5 67778888888888777773
No 53
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.50 E-value=2.2e-12 Score=118.00 Aligned_cols=204 Identities=13% Similarity=0.029 Sum_probs=145.0
Q ss_pred hhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhcccchhhhHHHHHHHhhhcCCCchhHHHHHHHH
Q 007519 297 AVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISM 376 (600)
Q Consensus 297 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 376 (600)
...|..+...+...|++++|+..|+++.+.. +. +...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~-----------------------------------~~~~~~~la~~ 80 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PS-----------------------------------SADAHAALAVV 80 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TT-----------------------------------CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CC-----------------------------------hHHHHHHHHHH
Confidence 3456666666666777777777776666542 11 23344455556
Q ss_pred HHhcCChHHHHHHHhcCC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHhcccCchHHH
Q 007519 377 YAKCGVIDNAYNIFSNMV---SRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPN-SVTFLGILSACSHAGLVSRG 452 (600)
Q Consensus 377 ~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a 452 (600)
+...|++++|...++++. +.+...+..+...+...|++++|.++++++...+..|+ ...+..+..++...|++++|
T Consensus 81 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 160 (252)
T 2ho1_A 81 FQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQA 160 (252)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHH
Confidence 666666666666666554 34566777777888888888888888888876333453 45666777788888999999
Q ss_pred HHHHHHHHhhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHhhhhCCHHHHHHHHHHHH
Q 007519 453 WELFNAMFDVYKIQP-GPEHYVSMINLLGRAGKIKEAEEFVLRLP-FEP-DHRIWGALLGACGFCEGNAEIAEHAAKRLL 529 (600)
Q Consensus 453 ~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~ 529 (600)
.+.++++.+. .| +...+..++..|...|++++|.+.++++. ..| +...+..+...+. ..|+.++|...+++++
T Consensus 161 ~~~~~~~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~A~~~~~~~~ 236 (252)
T 2ho1_A 161 KEYFEKSLRL---NRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAK-VFEDRDTAASYGLQLK 236 (252)
T ss_dssp HHHHHHHHHH---CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhc---CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHH-HccCHHHHHHHHHHHH
Confidence 9999888764 34 46778888999999999999999988863 333 4556666667777 8999999999999999
Q ss_pred hhCCCCCCcHH
Q 007519 530 ELDPLNAPAHV 540 (600)
Q Consensus 530 ~~~p~~~~~~~ 540 (600)
+..|+++....
T Consensus 237 ~~~p~~~~~~~ 247 (252)
T 2ho1_A 237 RLYPGSLEYQE 247 (252)
T ss_dssp HHCTTSHHHHH
T ss_pred HHCCCCHHHHH
Confidence 99996655443
No 54
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.49 E-value=9.6e-13 Score=126.86 Aligned_cols=223 Identities=9% Similarity=0.088 Sum_probs=188.8
Q ss_pred hHHHHHHHHHhcccchhhhHHHHHHHhhhcCCCchhHHHHHHHHHHhcCC-hHHHHHHHhcCC---CCChhhHHHHHHHH
Q 007519 333 ATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGV-IDNAYNIFSNMV---SRDLVSWNSMVMGF 408 (600)
Q Consensus 333 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~---~~~~~~~~~l~~~~ 408 (600)
..+..+..++...|+.+.|...++.+.+.... +...|+.+..++...|+ +++|+..|+++. +.+...|..+..++
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~-~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~ 176 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLV 176 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 34566667788899999999999999887644 57788889999999997 999999999987 56788999999999
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCC-CcchHHHHHHHHhh-cCChH
Q 007519 409 SHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQP-GPEHYVSMINLLGR-AGKIK 486 (600)
Q Consensus 409 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~-~g~~~ 486 (600)
...|++++|+..|+++.+.. +-+...|..+..++...|++++|+..++++++. .| +...|+.++.+|.+ .|..+
T Consensus 177 ~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l---~P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 177 EWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE---DVRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhcCcch
Confidence 99999999999999999863 446678888899999999999999999999975 67 58899999999999 66657
Q ss_pred HH-----HHHHHhCC-CCC-CHHHHHHHHHHHhhhhC--CHHHHHHHHHHHHhhCCCCCCcHHHHhHHHHhhC-------
Q 007519 487 EA-----EEFVLRLP-FEP-DHRIWGALLGACGFCEG--NAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASG------- 550 (600)
Q Consensus 487 ~A-----~~~~~~~~-~~p-~~~~~~~l~~~~~~~~g--~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g------- 550 (600)
+| ++.+++.. ..| +...|..+...+. ..| ++++|+..++++ +.+|+++.++..++.+|.+.|
T Consensus 253 eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~-~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~ 330 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLVPHNESAWNYLKGILQ-DRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNK 330 (382)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHT-TTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSH
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-ccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccch
Confidence 77 47777653 555 4667888888887 777 689999999998 899999999999999999875
Q ss_pred --CcHHHHHHHHHH
Q 007519 551 --RHVEEHKLRMDM 562 (600)
Q Consensus 551 --~~~~A~~~~~~~ 562 (600)
.+++|.++++.+
T Consensus 331 ~~~~~~A~~~~~~l 344 (382)
T 2h6f_A 331 EDILNKALELCEIL 344 (382)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 258899988877
No 55
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.48 E-value=3e-13 Score=133.75 Aligned_cols=260 Identities=13% Similarity=-0.007 Sum_probs=159.6
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHCCCCCCh-----hHHHHHHHHHhcccchhhhHHHHHHHhhhc-----CCCchhHHH
Q 007519 302 AMISGLVQNELFVEATYLFMEMRAHGVPPLN-----ATFSVLFGAAGATANIDLGRQIHCVLMKTE-----SESDLILEN 371 (600)
Q Consensus 302 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~ 371 (600)
.+...+...|++++|+..|+++.+.+ |+. ..+..+...+...|+++.|...++.+.+.. .......+.
T Consensus 53 ~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 130 (411)
T 4a1s_A 53 LEGERLCNAGDCRAGVAFFQAAIQAG--TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSG 130 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHhc--ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHH
Confidence 34444555566666666666555542 221 234444555555566666665555443321 111234555
Q ss_pred HHHHHHHhcCChHHHHHHHhcCCC---------CChhhHHHHHHHHHhcCC-----------------hHHHHHHHHHHH
Q 007519 372 CLISMYAKCGVIDNAYNIFSNMVS---------RDLVSWNSMVMGFSHHGL-----------------ANETLKVFESML 425 (600)
Q Consensus 372 ~l~~~~~~~~~~~~A~~~~~~~~~---------~~~~~~~~l~~~~~~~~~-----------------~~~a~~~~~~m~ 425 (600)
.+...|...|++++|...+++... ....++..+...+...|+ +++|++.+++..
T Consensus 131 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al 210 (411)
T 4a1s_A 131 NLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENL 210 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHH
Confidence 666667777777777777666541 123456666777777777 777777777654
Q ss_pred Hc----CCCCC-hhHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCCC----cchHHHHHHHHhhcCChHHHHHHHHhCC
Q 007519 426 ES----GTHPN-SVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPG----PEHYVSMINLLGRAGKIKEAEEFVLRLP 496 (600)
Q Consensus 426 ~~----~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 496 (600)
+. +..|. ...+..+...+...|++++|.+.++++.+...-.++ ...+..++.+|...|++++|.+.+++..
T Consensus 211 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 290 (411)
T 4a1s_A 211 KLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTL 290 (411)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 42 11111 235666667777888888888888877654211111 2367778888888888888888877653
Q ss_pred ----CCCC----HHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCC------CCcHHHHhHHHHhhCCcHHHHHHHHHH
Q 007519 497 ----FEPD----HRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLN------APAHVVLCNIYAASGRHVEEHKLRMDM 562 (600)
Q Consensus 497 ----~~p~----~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~ 562 (600)
...+ ..++..+...+. ..|++++|+..+++++++.+.. ..++..++.+|...|++++|.+.++..
T Consensus 291 ~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 369 (411)
T 4a1s_A 291 ALAVELGEREVEAQSCYSLGNTYT-LLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQH 369 (411)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 1111 345566666677 8888888888888888865432 347778888888888888888866655
Q ss_pred hh
Q 007519 563 GL 564 (600)
Q Consensus 563 ~~ 564 (600)
.+
T Consensus 370 l~ 371 (411)
T 4a1s_A 370 LQ 371 (411)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 56
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.48 E-value=4.7e-12 Score=113.41 Aligned_cols=206 Identities=15% Similarity=0.094 Sum_probs=147.5
Q ss_pred hhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhcccchhhhHHHHHHHhhhcCCCchhHHHHHHHH
Q 007519 297 AVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISM 376 (600)
Q Consensus 297 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 376 (600)
...+..+...+...|++++|+..|+++.+.. |+ +...+..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~----------------------------------~~~~~~~l~~~ 51 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSD--PK----------------------------------NELAWLVRAEI 51 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT----------------------------------CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC--cc----------------------------------chHHHHHHHHH
Confidence 4456666666777777777777777666542 21 23344455556
Q ss_pred HHhcCChHHHHHHHhcCC---CCChhhHHHHHHHHHhc-CChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHhcccCchHH
Q 007519 377 YAKCGVIDNAYNIFSNMV---SRDLVSWNSMVMGFSHH-GLANETLKVFESMLESGTHPN-SVTFLGILSACSHAGLVSR 451 (600)
Q Consensus 377 ~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~ 451 (600)
+...|++++|...++++. +.+..++..+...+... |++++|...++++.+.+..|+ ...+..+..++...|++++
T Consensus 52 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 131 (225)
T 2vq2_A 52 YQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGL 131 (225)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHH
Confidence 666666666666666554 34566777788888888 888899988888887333343 4567777788888999999
Q ss_pred HHHHHHHHHhhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHhCC-CC--CCHHHHHHHHHHHhhhhCCHHHHHHHHHH
Q 007519 452 GWELFNAMFDVYKIQP-GPEHYVSMINLLGRAGKIKEAEEFVLRLP-FE--PDHRIWGALLGACGFCEGNAEIAEHAAKR 527 (600)
Q Consensus 452 a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~--p~~~~~~~l~~~~~~~~g~~~~a~~~~~~ 527 (600)
|...++++.+. .| +...+..++..+...|++++|.+.++++. .. .+...+..+...+. ..|+.+.+..+++.
T Consensus 132 A~~~~~~~~~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~~~ 207 (225)
T 2vq2_A 132 AEAYLKRSLAA---QPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAK-ALGNAQAAYEYEAQ 207 (225)
T ss_dssp HHHHHHHHHHH---STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHH-HTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHh---CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH-hcCcHHHHHHHHHH
Confidence 99999988864 45 47788889999999999999999998864 33 35556655555666 88999999999999
Q ss_pred HHhhCCCCCCcHHHH
Q 007519 528 LLELDPLNAPAHVVL 542 (600)
Q Consensus 528 ~~~~~p~~~~~~~~l 542 (600)
+.+..|+++.....+
T Consensus 208 ~~~~~p~~~~~~~~l 222 (225)
T 2vq2_A 208 LQANFPYSEELQTVL 222 (225)
T ss_dssp HHHHCTTCHHHHHHH
T ss_pred HHHhCCCCHHHHHHh
Confidence 999999776655443
No 57
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.47 E-value=2.8e-12 Score=110.94 Aligned_cols=163 Identities=13% Similarity=0.067 Sum_probs=119.7
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCC-CcchHHHH
Q 007519 397 DLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQP-GPEHYVSM 475 (600)
Q Consensus 397 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l 475 (600)
+..+|..+...+...|++++|++.|++..+.. +-+...+..+..++...|++++|...++.+... .| +...+..+
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~ 79 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL---DTTSAEAYYIL 79 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CchhHHHHHHH
Confidence 45667777777777888888888888777652 334456667777777888888888888777654 34 45666777
Q ss_pred HHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCCCcHHHHhHHHHhhCCcH
Q 007519 476 INLLGRAGKIKEAEEFVLRLP-FEP-DHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHV 553 (600)
Q Consensus 476 ~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 553 (600)
+..+...++++.|.+.+++.. ..| +...+..+...+. ..|++++|+..++++++++|+++.++..++.+|.+.|+++
T Consensus 80 ~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~-~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~ 158 (184)
T 3vtx_A 80 GSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYD-SMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRD 158 (184)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHH-HhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHH
Confidence 777788888888888777754 333 4556666666777 8888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHhh
Q 007519 554 EEHKLRMDMGL 564 (600)
Q Consensus 554 ~A~~~~~~~~~ 564 (600)
+|.+.++...+
T Consensus 159 ~A~~~~~~al~ 169 (184)
T 3vtx_A 159 EAVKYFKKALE 169 (184)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 88886655443
No 58
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.47 E-value=4e-13 Score=134.69 Aligned_cols=190 Identities=10% Similarity=-0.025 Sum_probs=166.1
Q ss_pred CchhHHHHHHHHHHhcCCh-HHHHHHHhcCC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHH
Q 007519 365 SDLILENCLISMYAKCGVI-DNAYNIFSNMV---SRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGIL 440 (600)
Q Consensus 365 ~~~~~~~~l~~~~~~~~~~-~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~ 440 (600)
.+...+..+...+...|++ ++|...|++.. +.+...|..+..+|...|++++|+..|++..+. .|+...+..+.
T Consensus 100 ~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~lg 177 (474)
T 4abn_A 100 VEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTH--CKNKVSLQNLS 177 (474)
T ss_dssp CCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CCCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCHHHHHHHH
Confidence 3566777788888888898 99998888875 456788999999999999999999999999874 67778888888
Q ss_pred HHhccc---------CchHHHHHHHHHHHhhcCCCC-CcchHHHHHHHHhhc--------CChHHHHHHHHhCC-CCC--
Q 007519 441 SACSHA---------GLVSRGWELFNAMFDVYKIQP-GPEHYVSMINLLGRA--------GKIKEAEEFVLRLP-FEP-- 499 (600)
Q Consensus 441 ~~~~~~---------g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~--------g~~~~A~~~~~~~~-~~p-- 499 (600)
.++... |++++|.+.++++.+. .| +...|..++.+|... |++++|.+.+++.. ..|
T Consensus 178 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~ 254 (474)
T 4abn_A 178 MVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM---DVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKA 254 (474)
T ss_dssp HHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGG
T ss_pred HHHHHhccCChhhhhhhHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCc
Confidence 999999 9999999999999875 56 578899999999998 99999999999875 455
Q ss_pred --CHHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCCCcHHHHhHHHHhhCCcHHHHHHHH
Q 007519 500 --DHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRM 560 (600)
Q Consensus 500 --~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 560 (600)
+...|..+...+. ..|++++|+..++++++++|+++.++..++.++...|++++|.+.+.
T Consensus 255 ~~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~ 316 (474)
T 4abn_A 255 SSNPDLHLNRATLHK-YEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKG 316 (474)
T ss_dssp GGCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ccCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 6778888888888 99999999999999999999999999999999999999999986443
No 59
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.46 E-value=1.6e-12 Score=120.66 Aligned_cols=239 Identities=9% Similarity=-0.045 Sum_probs=144.1
Q ss_pred cCChhHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHhcCChhhHHHHhcccC---CCCchhHHHHHHHHHhcCChHHHH
Q 007519 210 NGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVP---VRDEISWTSMIDGYLSVGQVSNAY 286 (600)
Q Consensus 210 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~ 286 (600)
.|++++|+..++++.+......+.+..++..+...+...|++++|...|+.+. +.+..++..+...+...|++++|+
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~ 97 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAY 97 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHH
Confidence 45667777777776653000001134556666667777777777777776654 445566666777777777777777
Q ss_pred HHHhhCCC---CChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhcccchhhhHHHHHHHhhhcC
Q 007519 287 YLFHNMPD---RDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTES 363 (600)
Q Consensus 287 ~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 363 (600)
..|++... .+..++..+...|...|++++|+..|+++.+. .|+.......+..+...|+.+.|...+........
T Consensus 98 ~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~ 175 (275)
T 1xnf_A 98 EAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSD 175 (275)
T ss_dssp HHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC
Confidence 77766543 35667778888888888888888888888775 45555555555555666777777777766655432
Q ss_pred CCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCC-------hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHH
Q 007519 364 ESDLILENCLISMYAKCGVIDNAYNIFSNMVSRD-------LVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTF 436 (600)
Q Consensus 364 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~ 436 (600)
. +...+ .++..+...++.++|...+.+....+ ...|..+...+...|++++|...|++..+. .|+..
T Consensus 176 ~-~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~-- 249 (275)
T 1xnf_A 176 K-EQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN--NVHNF-- 249 (275)
T ss_dssp C-CSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CCTTC--
T ss_pred c-chHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CchhH--
Confidence 2 23333 35555666666777777776665322 345666666666677777777777666653 34221
Q ss_pred HHHHHHhcccCchHHHHHHH
Q 007519 437 LGILSACSHAGLVSRGWELF 456 (600)
Q Consensus 437 ~~l~~~~~~~g~~~~a~~~~ 456 (600)
.....++...|++++|.+.+
T Consensus 250 ~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 250 VEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHhhHHHH
Confidence 11233444555555555544
No 60
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.46 E-value=9.6e-13 Score=129.81 Aligned_cols=286 Identities=13% Similarity=0.060 Sum_probs=166.9
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHhhCCC--C-C----hhhHHHHHHHHHhCCChhHHHHHHHHHHHC----CCCCC-hhH
Q 007519 267 ISWTSMIDGYLSVGQVSNAYYLFHNMPD--R-D----AVAWTAMISGLVQNELFVEATYLFMEMRAH----GVPPL-NAT 334 (600)
Q Consensus 267 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p~-~~~ 334 (600)
..+......+...|++++|+..|++... | + ...+..+...+...|++++|+..+++.... +-.|. ...
T Consensus 10 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 89 (406)
T 3sf4_A 10 LELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 89 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 3455666777778888888887776543 2 2 245667777777788888888877775432 11121 234
Q ss_pred HHHHHHHHhcccchhhhHHHHHHHhhhcCC-C----chhHHHHHHHHHHhcCC--------------------hHHHHHH
Q 007519 335 FSVLFGAAGATANIDLGRQIHCVLMKTESE-S----DLILENCLISMYAKCGV--------------------IDNAYNI 389 (600)
Q Consensus 335 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~----~~~~~~~l~~~~~~~~~--------------------~~~A~~~ 389 (600)
+..+...+...|+++.|...+..+.+.... + ...++..+...|...|+ +++|...
T Consensus 90 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~ 169 (406)
T 3sf4_A 90 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDF 169 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHH
Confidence 555566677777777777777755543211 0 13355666666777777 6777666
Q ss_pred HhcCC-----CC----ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCC----hhHHHHHHHHhcccCchHHHHHH
Q 007519 390 FSNMV-----SR----DLVSWNSMVMGFSHHGLANETLKVFESMLESGT-HPN----SVTFLGILSACSHAGLVSRGWEL 455 (600)
Q Consensus 390 ~~~~~-----~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~p~----~~~~~~l~~~~~~~g~~~~a~~~ 455 (600)
+++.. .+ ...++..+...+...|++++|...+++..+... .++ ..++..+...+...|++++|...
T Consensus 170 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 249 (406)
T 3sf4_A 170 YEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEY 249 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 66543 11 123556666667777777777777776654310 111 12455566666777777777777
Q ss_pred HHHHHhhcCCCCC----cchHHHHHHHHhhcCChHHHHHHHHhCC----CCCC----HHHHHHHHHHHhhhhCCHHHHHH
Q 007519 456 FNAMFDVYKIQPG----PEHYVSMINLLGRAGKIKEAEEFVLRLP----FEPD----HRIWGALLGACGFCEGNAEIAEH 523 (600)
Q Consensus 456 ~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~----~~~~~~l~~~~~~~~g~~~~a~~ 523 (600)
++++.+...-.++ ..++..++..|...|++++|.+.+++.. ..++ ..++..+...+. ..|++++|+.
T Consensus 250 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~ 328 (406)
T 3sf4_A 250 YKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYT-ALGNHDQAMH 328 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HHTCHHHHHH
T ss_pred HHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHH-HcCCHHHHHH
Confidence 7766543111111 4456666777777777777777766642 1111 334455555555 6777777777
Q ss_pred HHHHHHhhCCCCC------CcHHHHhHHHHhhCCcH
Q 007519 524 AAKRLLELDPLNA------PAHVVLCNIYAASGRHV 553 (600)
Q Consensus 524 ~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~ 553 (600)
.+++++++.+... .++..++.++...|+..
T Consensus 329 ~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 329 FAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSY 364 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhH
Confidence 7777777766442 23344444444444444
No 61
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.46 E-value=3.3e-13 Score=133.17 Aligned_cols=269 Identities=10% Similarity=-0.014 Sum_probs=189.3
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHHHhhhcCCCCCC-----hhhHHHHHHHHHhcCChhhHHHHhcccCCCCchhHHHH
Q 007519 198 VSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCN-----VQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSM 272 (600)
Q Consensus 198 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l 272 (600)
..+......+...|++++|...|+++.+. .|+ ...+..+...+...|++++|...+++..
T Consensus 10 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~-----~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al---------- 74 (406)
T 3sf4_A 10 LELALEGERLCKSGDCRAGVSFFEAAVQV-----GTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDL---------- 74 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH----------
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhc-----CcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH----------
Confidence 34556667777888888888888888765 232 2456666667777777777776665442
Q ss_pred HHHHHhcCChHHHHHHHhhCCC--CChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCC-CCC----hhHHHHHHHHHhcc
Q 007519 273 IDGYLSVGQVSNAYYLFHNMPD--RDAVAWTAMISGLVQNELFVEATYLFMEMRAHGV-PPL----NATFSVLFGAAGAT 345 (600)
Q Consensus 273 ~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~----~~~~~~l~~~~~~~ 345 (600)
.+...... ....++..+...+...|++++|+..+++..+... .++ ..++..+...+...
T Consensus 75 --------------~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~ 140 (406)
T 3sf4_A 75 --------------TLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAK 140 (406)
T ss_dssp --------------HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred --------------HHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHc
Confidence 11111111 1133566677777888888888888877654310 011 33667777788889
Q ss_pred cc--------------------hhhhHHHHHHHhhh----cCC-CchhHHHHHHHHHHhcCChHHHHHHHhcCC-----C
Q 007519 346 AN--------------------IDLGRQIHCVLMKT----ESE-SDLILENCLISMYAKCGVIDNAYNIFSNMV-----S 395 (600)
Q Consensus 346 ~~--------------------~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-----~ 395 (600)
|+ ++.|...+....+. +.. ....++..+...|...|++++|...+++.. .
T Consensus 141 g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 220 (406)
T 3sf4_A 141 GKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF 220 (406)
T ss_dssp HHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHT
T ss_pred CCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhc
Confidence 99 99999998866543 111 124467788899999999999999998876 1
Q ss_pred CC----hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CC----hhHHHHHHHHhcccCchHHHHHHHHHHHhhcCCC
Q 007519 396 RD----LVSWNSMVMGFSHHGLANETLKVFESMLESGTH-PN----SVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQ 466 (600)
Q Consensus 396 ~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~-p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 466 (600)
++ ..++..+...+...|++++|...+++....... ++ ..++..+...+...|++++|.+.++++.+...-.
T Consensus 221 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 300 (406)
T 3sf4_A 221 GDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL 300 (406)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhc
Confidence 22 237888899999999999999999998754111 11 3567778888999999999999999987642212
Q ss_pred CC----cchHHHHHHHHhhcCChHHHHHHHHhC
Q 007519 467 PG----PEHYVSMINLLGRAGKIKEAEEFVLRL 495 (600)
Q Consensus 467 p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~ 495 (600)
++ ..++..++.+|...|++++|.+.+++.
T Consensus 301 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 333 (406)
T 3sf4_A 301 NDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH 333 (406)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 22 567888999999999999999998875
No 62
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.45 E-value=1.1e-12 Score=125.63 Aligned_cols=259 Identities=14% Similarity=0.030 Sum_probs=174.4
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHCCCCCC-----hhHHHHHHHHHhcccchhhhHHHHHHHhhh----cCC-CchhHHHH
Q 007519 303 MISGLVQNELFVEATYLFMEMRAHGVPPL-----NATFSVLFGAAGATANIDLGRQIHCVLMKT----ESE-SDLILENC 372 (600)
Q Consensus 303 li~~~~~~g~~~~a~~~~~~m~~~g~~p~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~ 372 (600)
....+...|++++|+..|+++.+.. |+ ...+..+...+...|+++.|...+..+.+. +.. ....++..
T Consensus 11 ~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 88 (338)
T 3ro2_A 11 EGERLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGN 88 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHH
Confidence 3445566666666666666666542 22 134445555666666666666666644332 111 12445666
Q ss_pred HHHHHHhcCChHHHHHHHhcCC-----CCC----hhhHHHHHHHHHhcCC--------------------hHHHHHHHHH
Q 007519 373 LISMYAKCGVIDNAYNIFSNMV-----SRD----LVSWNSMVMGFSHHGL--------------------ANETLKVFES 423 (600)
Q Consensus 373 l~~~~~~~~~~~~A~~~~~~~~-----~~~----~~~~~~l~~~~~~~~~--------------------~~~a~~~~~~ 423 (600)
+...+...|++++|...+++.. .++ ..++..+...+...|+ +++|...+++
T Consensus 89 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 168 (338)
T 3ro2_A 89 LGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEE 168 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHH
Confidence 7777778888888887777654 122 2366777778888888 8888888877
Q ss_pred HHHc----CCCCC-hhHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCCC----cchHHHHHHHHhhcCChHHHHHHHHh
Q 007519 424 MLES----GTHPN-SVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPG----PEHYVSMINLLGRAGKIKEAEEFVLR 494 (600)
Q Consensus 424 m~~~----~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~ 494 (600)
.... +..|. ...+..+...+...|++++|.+.++++.+...-.++ ..++..++..+...|++++|.+.+++
T Consensus 169 a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 248 (338)
T 3ro2_A 169 NLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKK 248 (338)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 6542 11111 235666777888899999999999888754211111 33788889999999999999998877
Q ss_pred CC----CCCC----HHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCC------CCcHHHHhHHHHhhCCcHHHHHHHH
Q 007519 495 LP----FEPD----HRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLN------APAHVVLCNIYAASGRHVEEHKLRM 560 (600)
Q Consensus 495 ~~----~~p~----~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~ 560 (600)
.. ..++ ..++..+...+. ..|++++|+..++++++..|.. ..++..++.+|...|++++|...++
T Consensus 249 al~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 327 (338)
T 3ro2_A 249 TLLLARQLKDRAVEAQSCYSLGNTYT-LLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAE 327 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHhhcchhHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 53 1122 345666677777 8999999999999998865533 3478889999999999999999777
Q ss_pred HHhh
Q 007519 561 DMGL 564 (600)
Q Consensus 561 ~~~~ 564 (600)
...+
T Consensus 328 ~a~~ 331 (338)
T 3ro2_A 328 KHLE 331 (338)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6654
No 63
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.42 E-value=4.1e-12 Score=109.86 Aligned_cols=165 Identities=12% Similarity=0.097 Sum_probs=141.0
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHhcCC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHH
Q 007519 366 DLILENCLISMYAKCGVIDNAYNIFSNMV---SRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSA 442 (600)
Q Consensus 366 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 442 (600)
+..+|..+...|...|++++|...|++.. +.+..+|..+..++...|++++|+..+....... +.+...+..+...
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSA 82 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHH
Confidence 45678888999999999999999999876 5677889999999999999999999999998753 4445666677788
Q ss_pred hcccCchHHHHHHHHHHHhhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHhhhhCCHH
Q 007519 443 CSHAGLVSRGWELFNAMFDVYKIQP-GPEHYVSMINLLGRAGKIKEAEEFVLRLP-FEP-DHRIWGALLGACGFCEGNAE 519 (600)
Q Consensus 443 ~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~g~~~ 519 (600)
+...++++.+...+.++... .| +...+..++.+|.+.|++++|++.+++.. ..| +..++..+..++. ..|+++
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~---~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~-~~g~~~ 158 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIAL---NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYE-GKGLRD 158 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHH
T ss_pred HHHcCCHHHHHHHHHHHHHh---CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHH-HCCCHH
Confidence 88999999999999998864 45 57788999999999999999999998874 444 5677888888888 999999
Q ss_pred HHHHHHHHHHhhCCCC
Q 007519 520 IAEHAAKRLLELDPLN 535 (600)
Q Consensus 520 ~a~~~~~~~~~~~p~~ 535 (600)
+|+..++++++++|++
T Consensus 159 ~A~~~~~~al~~~p~~ 174 (184)
T 3vtx_A 159 EAVKYFKKALEKEEKK 174 (184)
T ss_dssp HHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHHhCCccC
Confidence 9999999999999954
No 64
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.41 E-value=3.1e-10 Score=116.80 Aligned_cols=407 Identities=9% Similarity=0.046 Sum_probs=252.3
Q ss_pred CCceeHHHHHHHHHHCCChhHHHHHhhcCCC--C-CcccHHHHHHHHHhcCC---HhHHHHHHHhccc-----CCchhHH
Q 007519 102 RNVVSWNSMVVGLIRNGELNEARKVFNSMPI--K-NVISWNAMIAGYVECCM---MGEAIVLFEEMEE-----RNVVTWT 170 (600)
Q Consensus 102 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~-----~~~~~~~ 170 (600)
.|...|..++..+.+.++++.+..+|+++.. | ....|...+..-.+.|+ ++.+..+|++... |++..|.
T Consensus 64 ~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW~ 143 (679)
T 4e6h_A 64 TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLWL 143 (679)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHHH
T ss_pred CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHHH
Confidence 4666788888888888888888888888766 3 34455566666667777 8888888887763 5666666
Q ss_pred HHHHHHHhcCCh--------hHHHHHHccCC------CC-CcchHHHHHHHHHh---------cCChhHHHHHHHHHHhh
Q 007519 171 SMISGYCRAGEV--------EEGYCLFRRMP------RK-NVVSWTAMIGGFAW---------NGFHKESLLLFIEMKGI 226 (600)
Q Consensus 171 ~l~~~~~~~g~~--------~~A~~~~~~~~------~~-~~~~~~~li~~~~~---------~~~~~~a~~~~~~~~~~ 226 (600)
..+....+.++. +...++|+... .+ +...|...+..... +++++.+..+|+.++..
T Consensus 144 ~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~i 223 (679)
T 4e6h_A 144 SYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQ 223 (679)
T ss_dssp HHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHhC
Confidence 666655554443 22335555422 22 23456666665432 33456677777776632
Q ss_pred hcCCCCCC--hhhHHHHHHHHHhcCChhhHHHHhcccCCCCchhHHHHHHHHHhcCChHHHHHHHhh-------CCC---
Q 007519 227 CDNGNNCN--VQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHN-------MPD--- 294 (600)
Q Consensus 227 ~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~-------~~~--- 294 (600)
+.. ..+|......-...+. ..+..++.+. ..+++.|...+.+ +..
T Consensus 224 -----P~~~~~~~w~~Y~~fe~~~~~-~~a~~~~~e~-----------------~~~y~~Ar~~~~e~~~~~~~l~r~~p 280 (679)
T 4e6h_A 224 -----PMDCLESMWQRYTQWEQDVNQ-LTARRHIGEL-----------------SAQYMNARSLYQDWLNITKGLKRNLP 280 (679)
T ss_dssp -----CCSSHHHHHHHHHHHHHHHCT-TTHHHHHHHH-----------------HHHHHHHHHHHHHHHHHTTTCCCCCC
T ss_pred -----ccHHHHHHHHHHHHHHHhcCc-chHHHHHHHh-----------------hHHHHHHHHHHHHHHHHHHhHhhccc
Confidence 211 1222222111111111 1111111110 0111222222211 110
Q ss_pred -----------C--C------hhhHHHHHHHHHhCC-------ChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhcccch
Q 007519 295 -----------R--D------AVAWTAMISGLVQNE-------LFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANI 348 (600)
Q Consensus 295 -----------~--~------~~~~~~li~~~~~~g-------~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~ 348 (600)
| + ...|...+.---..+ ..+++..+|++.+.. ++-....|......+...|+.
T Consensus 281 ~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~ 359 (679)
T 4e6h_A 281 ITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTD 359 (679)
T ss_dssp SSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCC
T ss_pred cccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcH
Confidence 0 0 124555554333322 124566788888775 344666777777777788888
Q ss_pred hhhH-HHHHHHhhhcCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC-------------CC------------hhhHH
Q 007519 349 DLGR-QIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVS-------------RD------------LVSWN 402 (600)
Q Consensus 349 ~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-------------~~------------~~~~~ 402 (600)
+.|. .+++..... .+.+..++..++....+.|++++|..+|+++.. |+ ...|.
T Consensus 360 ~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi 438 (679)
T 4e6h_A 360 STVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYC 438 (679)
T ss_dssp TTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHH
Confidence 8896 999988764 344666777888888899999999999988762 31 23688
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcc-cCchHHHHHHHHHHHhhcCCCCCcchHHHHHHHHhh
Q 007519 403 SMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSH-AGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGR 481 (600)
Q Consensus 403 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 481 (600)
..+....+.|+.+.|..+|.+..+.-..+....|...+..-.+ .++.+.|..+|+...+.++ -+...+...+.....
T Consensus 439 ~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p--~~~~~w~~y~~fe~~ 516 (679)
T 4e6h_A 439 VYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFA--TDGEYINKYLDFLIY 516 (679)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCC--CchHHHHHHHHHHHh
Confidence 8888888889999999999999875112223344333322223 3569999999999998622 256667788888889
Q ss_pred cCChHHHHHHHHhCC-CCC----CHHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCC
Q 007519 482 AGKIKEAEEFVLRLP-FEP----DHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNA 536 (600)
Q Consensus 482 ~g~~~~A~~~~~~~~-~~p----~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 536 (600)
.|+.+.|..+|++.. ..| ....|...+..-. ..|+.+.+..+.+++.+..|+++
T Consensus 517 ~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~-~~G~~~~~~~v~~R~~~~~P~~~ 575 (679)
T 4e6h_A 517 VNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFES-KVGSLNSVRTLEKRFFEKFPEVN 575 (679)
T ss_dssp HTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHH-HTCCSHHHHHHHHHHHHHSTTCC
T ss_pred CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCc
Confidence 999999999999965 333 2345666666666 88999999999999999999654
No 65
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.39 E-value=8.1e-11 Score=110.97 Aligned_cols=219 Identities=10% Similarity=0.056 Sum_probs=158.0
Q ss_pred hHHHHHHHHHHHCCCCCChhHHHHHHHHHh-------cccch-------hhhHHHHHHHhhhcCCCchhHHHHHHHHHHh
Q 007519 314 VEATYLFMEMRAHGVPPLNATFSVLFGAAG-------ATANI-------DLGRQIHCVLMKTESESDLILENCLISMYAK 379 (600)
Q Consensus 314 ~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~-------~~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 379 (600)
++|+..|++..... +.+...|..+...+. ..|++ +.|..+++...+.-.+.+...+..++..+..
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 56777777777642 334445555555443 24664 7788888777763222355677888888888
Q ss_pred cCChHHHHHHHhcCC--CC-Chh-hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHh-cccCchHHHHH
Q 007519 380 CGVIDNAYNIFSNMV--SR-DLV-SWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSAC-SHAGLVSRGWE 454 (600)
Q Consensus 380 ~~~~~~A~~~~~~~~--~~-~~~-~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~-~~~g~~~~a~~ 454 (600)
.|++++|..+|+++. .| +.. .|..++..+.+.|++++|..+|++..+.. +++...|....... ...|+.++|..
T Consensus 112 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~ 190 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFK 190 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHH
Confidence 889999998888876 33 343 78888888888999999999999988753 33444444333222 23689999999
Q ss_pred HHHHHHhhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHhCC----CCC--CHHHHHHHHHHHhhhhCCHHHHHHHHHH
Q 007519 455 LFNAMFDVYKIQP-GPEHYVSMINLLGRAGKIKEAEEFVLRLP----FEP--DHRIWGALLGACGFCEGNAEIAEHAAKR 527 (600)
Q Consensus 455 ~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p--~~~~~~~l~~~~~~~~g~~~~a~~~~~~ 527 (600)
+|+++.+. .| ++..|..++..+.+.|++++|..+|++.. .+| ....|..++.... ..|+.+.|..++++
T Consensus 191 ~~~~al~~---~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~-~~g~~~~a~~~~~~ 266 (308)
T 2ond_A 191 IFELGLKK---YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFES-NIGDLASILKVEKR 266 (308)
T ss_dssp HHHHHHHH---HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHH-HHSCHHHHHHHHHH
T ss_pred HHHHHHHh---CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH-HcCCHHHHHHHHHH
Confidence 99998875 45 57788888999999999999999998864 244 3456777777777 88999999999999
Q ss_pred HHhhCCCCCCc
Q 007519 528 LLELDPLNAPA 538 (600)
Q Consensus 528 ~~~~~p~~~~~ 538 (600)
+++..|+++..
T Consensus 267 a~~~~p~~~~~ 277 (308)
T 2ond_A 267 RFTAFREEYEG 277 (308)
T ss_dssp HHHHTTTTTSS
T ss_pred HHHHccccccc
Confidence 99999976543
No 66
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.38 E-value=3.1e-12 Score=126.41 Aligned_cols=266 Identities=13% Similarity=0.044 Sum_probs=166.1
Q ss_pred hhHHHHHHHHHhcCChhhHHHHhcccC---CCCc----hhHHHHHHHHHhcCChHHHHHHHhhCCC---------CChhh
Q 007519 236 QSCNSMINGYIRFGRLEEAQNLFDTVP---VRDE----ISWTSMIDGYLSVGQVSNAYYLFHNMPD---------RDAVA 299 (600)
Q Consensus 236 ~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~---------~~~~~ 299 (600)
..+..+...+...|++++|...|+++. +.++ .++..+...|...|++++|+..|++... ....+
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 128 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS 128 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence 344455566677777777777777665 2222 2455566666666666666666655432 11234
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhcccchhhhHHHHHHHhhhc-CCCchhHHHHHHHHHH
Q 007519 300 WTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTE-SESDLILENCLISMYA 378 (600)
Q Consensus 300 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~ 378 (600)
+..+...|...|++++|+..+++..+... +.+ ......++..+...|.
T Consensus 129 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~-------------------------------~~~~~~~~~~~~~~l~~~~~ 177 (411)
T 4a1s_A 129 SGNLGNTLKVMGRFDEAAICCERHLTLAR-------------------------------QLGDRLSEGRALYNLGNVYH 177 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHH-------------------------------HHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHH-------------------------------HhhchHHHHHHHHHHHHHHH
Confidence 55555556666666666666655443200 000 0011234444555555
Q ss_pred hcCC-----------------hHHHHHHHhcCCC---------CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-C
Q 007519 379 KCGV-----------------IDNAYNIFSNMVS---------RDLVSWNSMVMGFSHHGLANETLKVFESMLESGTH-P 431 (600)
Q Consensus 379 ~~~~-----------------~~~A~~~~~~~~~---------~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~-p 431 (600)
..|+ +++|...+++... .....+..+...+...|++++|+..+++..+.... +
T Consensus 178 ~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 257 (411)
T 4a1s_A 178 AKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFG 257 (411)
T ss_dssp HHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred HcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcC
Confidence 5555 5555555554421 12346677778888888888888888887653111 1
Q ss_pred C----hhHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCC----CcchHHHHHHHHhhcCChHHHHHHHHhCC-C---CC
Q 007519 432 N----SVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQP----GPEHYVSMINLLGRAGKIKEAEEFVLRLP-F---EP 499 (600)
Q Consensus 432 ~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~---~p 499 (600)
+ ...+..+...+...|++++|...++++.....-.. ...++..++.+|...|++++|.+.+++.. . .+
T Consensus 258 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 337 (411)
T 4a1s_A 258 DRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELG 337 (411)
T ss_dssp CHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC
Confidence 1 12667777888889999999999888775421111 15677888999999999999999988763 1 11
Q ss_pred C----HHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCC
Q 007519 500 D----HRIWGALLGACGFCEGNAEIAEHAAKRLLELDP 533 (600)
Q Consensus 500 ~----~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p 533 (600)
+ ..++..+...+. ..|++++|...+++++++.+
T Consensus 338 ~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~ 374 (411)
T 4a1s_A 338 DRIGEARACWSLGNAHS-AIGGHERALKYAEQHLQLAX 374 (411)
T ss_dssp CHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCC
T ss_pred ChHHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHHHHh
Confidence 1 335666777777 99999999999999998877
No 67
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.37 E-value=2.5e-11 Score=118.63 Aligned_cols=226 Identities=8% Similarity=-0.012 Sum_probs=124.2
Q ss_pred HHHhCCChhHHHHHHHHHHHCC-CCCC----hhHHHHHHHHHhcccchhhhHHHHHHHhhhcCCC------chhHHHHHH
Q 007519 306 GLVQNELFVEATYLFMEMRAHG-VPPL----NATFSVLFGAAGATANIDLGRQIHCVLMKTESES------DLILENCLI 374 (600)
Q Consensus 306 ~~~~~g~~~~a~~~~~~m~~~g-~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~~~l~ 374 (600)
.+...|++++|+..|++..+.- -.++ ..++..+...+...|+.+.|...+..+.+.-... ...+++.+.
T Consensus 112 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg 191 (383)
T 3ulq_A 112 YELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFA 191 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHH
Confidence 3444455555555555444320 0011 1234444444455555555555544333321110 123455566
Q ss_pred HHHHhcCChHHHHHHHhcCC-----CCC----hhhHHHHHHHHHhcCChHHHHHHHHHHHHc----CC-CCChhHHHHHH
Q 007519 375 SMYAKCGVIDNAYNIFSNMV-----SRD----LVSWNSMVMGFSHHGLANETLKVFESMLES----GT-HPNSVTFLGIL 440 (600)
Q Consensus 375 ~~~~~~~~~~~A~~~~~~~~-----~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~-~p~~~~~~~l~ 440 (600)
..|...|++++|...|++.. .++ ..++..+...|...|++++|+..+++..+. +. +....++..+.
T Consensus 192 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~ 271 (383)
T 3ulq_A 192 TNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLIT 271 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHH
Confidence 66677777777777666554 111 135666777777777777777777776652 22 22234566666
Q ss_pred HHhcccCchHHHHHHHHHHHhhcCC--CC-CcchHHHHHHHHhhcCC---hHHHHHHHHhCCCCCCH-HHHHHHHHHHhh
Q 007519 441 SACSHAGLVSRGWELFNAMFDVYKI--QP-GPEHYVSMINLLGRAGK---IKEAEEFVLRLPFEPDH-RIWGALLGACGF 513 (600)
Q Consensus 441 ~~~~~~g~~~~a~~~~~~~~~~~~~--~p-~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~p~~-~~~~~l~~~~~~ 513 (600)
.++...|++++|...++++.+...- .| ....+..+...|...|+ +++|..++++....|+. ..+..+...+.
T Consensus 272 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~- 350 (383)
T 3ulq_A 272 QIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKYYH- 350 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH-
Confidence 7777777777777777776643111 11 12234556677777777 67777777776544433 23444555555
Q ss_pred hhCCHHHHHHHHHHHHhhC
Q 007519 514 CEGNAEIAEHAAKRLLELD 532 (600)
Q Consensus 514 ~~g~~~~a~~~~~~~~~~~ 532 (600)
..|++++|...+++++++.
T Consensus 351 ~~g~~~~A~~~~~~al~~~ 369 (383)
T 3ulq_A 351 ERKNFQKASAYFLKVEQVR 369 (383)
T ss_dssp HTTCHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHH
Confidence 7777777777777776643
No 68
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.36 E-value=6e-12 Score=120.42 Aligned_cols=98 Identities=18% Similarity=0.136 Sum_probs=55.3
Q ss_pred HHHHHHHHhcccCchHHHHHHHHHHHhhcCCCCC----cchHHHHHHHHhhcCChHHHHHHHHhCC----CCCC----HH
Q 007519 435 TFLGILSACSHAGLVSRGWELFNAMFDVYKIQPG----PEHYVSMINLLGRAGKIKEAEEFVLRLP----FEPD----HR 502 (600)
Q Consensus 435 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~----~~ 502 (600)
++..+...+...|++++|...++++.+...-.++ ..++..++..|...|++++|.+.+++.. ..++ ..
T Consensus 225 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 304 (338)
T 3ro2_A 225 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 304 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHH
Confidence 3444445555555555555555555432111111 4456666777777777777777666542 0111 23
Q ss_pred HHHHHHHHHhhhhCCHHHHHHHHHHHHhhCC
Q 007519 503 IWGALLGACGFCEGNAEIAEHAAKRLLELDP 533 (600)
Q Consensus 503 ~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p 533 (600)
++..+...+. ..|++++|...+++++++.+
T Consensus 305 ~~~~la~~~~-~~g~~~~A~~~~~~a~~~~~ 334 (338)
T 3ro2_A 305 ACWSLGNAYT-ALGNHDQAMHFAEKHLEISR 334 (338)
T ss_dssp HHHHHHHHHH-HHTCHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHH-HcCChHHHHHHHHHHHHHHH
Confidence 4555666666 78888888888888887665
No 69
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.36 E-value=1.1e-11 Score=129.16 Aligned_cols=161 Identities=16% Similarity=0.156 Sum_probs=134.2
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCC-CcchHHH
Q 007519 397 DLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPN-SVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQP-GPEHYVS 474 (600)
Q Consensus 397 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~ 474 (600)
+...|+.+...+.+.|++++|++.|++..+. .|+ ...+..+..++.+.|++++|++.|+++.+. .| +...|..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l--~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l---~P~~~~a~~n 82 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI---SPTFADAYSN 82 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHH
Confidence 4567888888888899999999999888875 444 567788888888999999999999988864 67 4778889
Q ss_pred HHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCCCcHHHHhHHHHhhCCc
Q 007519 475 MINLLGRAGKIKEAEEFVLRLP-FEP-DHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRH 552 (600)
Q Consensus 475 l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 552 (600)
++.+|.+.|++++|++.+++.. ..| +...+..+...+. ..|++++|+..|+++++++|+++.++..++.++...|++
T Consensus 83 Lg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~-~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~ 161 (723)
T 4gyw_A 83 MGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHK-DSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDW 161 (723)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccH
Confidence 9999999999999999988864 455 4667888888888 899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh
Q 007519 553 VEEHKLRMDMG 563 (600)
Q Consensus 553 ~~A~~~~~~~~ 563 (600)
++|.+.++...
T Consensus 162 ~~A~~~~~kal 172 (723)
T 4gyw_A 162 TDYDERMKKLV 172 (723)
T ss_dssp TTHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99988655543
No 70
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.34 E-value=5.7e-11 Score=112.00 Aligned_cols=179 Identities=12% Similarity=0.065 Sum_probs=102.9
Q ss_pred hHHHHHHHHHHHCCCCCC-hhHHHHHHHHHhcccchhhhHHHHHHHhhhcCCCchh-HHHHHHHHHHhcCChHHHHHHHh
Q 007519 314 VEATYLFMEMRAHGVPPL-NATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLI-LENCLISMYAKCGVIDNAYNIFS 391 (600)
Q Consensus 314 ~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~ 391 (600)
++|..+|++..+. +.|+ ...+..+...+...|+++.|..+|+.+.+.... +.. +|..++..+.+.|++++|..+|+
T Consensus 81 ~~A~~~~~rAl~~-~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~ 158 (308)
T 2ond_A 81 DEAANIYERAIST-LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFK 158 (308)
T ss_dssp HHHHHHHHHHHTT-TTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSS-CTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-hCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccc-CccHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 5555555555542 1232 234455555555555666666666555553221 122 55666666666666666666666
Q ss_pred cCC---CCChhhHHHHHHHHH-hcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCC
Q 007519 392 NMV---SRDLVSWNSMVMGFS-HHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQP 467 (600)
Q Consensus 392 ~~~---~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p 467 (600)
+.. +.+...|...+.... ..|++++|..+|++..+. .+-+...+..++..+...|++++|..+|+++.....+.|
T Consensus 159 ~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p 237 (308)
T 2ond_A 159 KAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK-YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPP 237 (308)
T ss_dssp HHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCG
T ss_pred HHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCH
Confidence 654 222333332222211 257777777777777664 233455666666777777777777777777776422344
Q ss_pred --CcchHHHHHHHHhhcCChHHHHHHHHhC
Q 007519 468 --GPEHYVSMINLLGRAGKIKEAEEFVLRL 495 (600)
Q Consensus 468 --~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 495 (600)
....|..++..+.+.|+.++|..+++++
T Consensus 238 ~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 238 EKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp GGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 2456667777777777777777777665
No 71
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.32 E-value=1.1e-11 Score=121.24 Aligned_cols=225 Identities=9% Similarity=-0.030 Sum_probs=170.2
Q ss_pred HHHHHhcccchhhhHHHHHHHhhh----cCCC-chhHHHHHHHHHHhcCChHHHHHHHhcCC-----CCC-----hhhHH
Q 007519 338 LFGAAGATANIDLGRQIHCVLMKT----ESES-DLILENCLISMYAKCGVIDNAYNIFSNMV-----SRD-----LVSWN 402 (600)
Q Consensus 338 l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-----~~~-----~~~~~ 402 (600)
....+...|+++.|...+..+.+. +..+ ...++..+...|...|++++|...+++.. .++ ..+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 444677899999999999987764 1111 34678889999999999999999988775 121 35788
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCC-CCh----hHHHHHHHHhcccCchHHHHHHHHHHHhhc---CCCC-CcchHH
Q 007519 403 SMVMGFSHHGLANETLKVFESMLESGTH-PNS----VTFLGILSACSHAGLVSRGWELFNAMFDVY---KIQP-GPEHYV 473 (600)
Q Consensus 403 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~-p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~p-~~~~~~ 473 (600)
.+...|...|++++|+..+++..+.... ++. .++..+..+|...|++++|.+.++++.+.. +..| ...++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 8889999999999999999998764111 111 467788899999999999999999988621 1213 366788
Q ss_pred HHHHHHhhcCChHHHHHHHHhCC------CCCCH-HHHHHHHHHHhhhhCC---HHHHHHHHHHHHhhCCCCCCcHHHHh
Q 007519 474 SMINLLGRAGKIKEAEEFVLRLP------FEPDH-RIWGALLGACGFCEGN---AEIAEHAAKRLLELDPLNAPAHVVLC 543 (600)
Q Consensus 474 ~l~~~~~~~g~~~~A~~~~~~~~------~~p~~-~~~~~l~~~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~ 543 (600)
.++..|.+.|++++|.+.+++.. ..|.. ..+..+...+. ..|+ .++|+..+++. ...|....++..++
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la 346 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYL-SGPDEEAIQGFFDFLESK-MLYADLEDFAIDVA 346 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-SSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHH
Confidence 99999999999999999998863 12322 23455555666 8888 78888888876 33343556788999
Q ss_pred HHHHhhCCcHHHHHHHHHHhh
Q 007519 544 NIYAASGRHVEEHKLRMDMGL 564 (600)
Q Consensus 544 ~~~~~~g~~~~A~~~~~~~~~ 564 (600)
.+|...|++++|...++...+
T Consensus 347 ~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 347 KYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHH
Confidence 999999999999997766544
No 72
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.31 E-value=1e-09 Score=112.98 Aligned_cols=124 Identities=10% Similarity=0.163 Sum_probs=74.7
Q ss_pred CCcchHHHHHHHHHcCCChhHHHHHhhhcCC--C-ChhhHHHHHHHHHhcCC---hHHHHHHhhcCCC-----CCceeHH
Q 007519 40 RNVVSYNAMLSGFLQNGRLSEARRLFEEMPE--R-NVVSWTAMICGLADAGR---VCEARKLFEEMPE-----RNVVSWN 108 (600)
Q Consensus 40 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~-----~~~~~~~ 108 (600)
.|..+|..++..+.+.+.++.+..+|+.+.. | ....|...+..-.+.|+ ++.+..+|++... |++..|.
T Consensus 64 ~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW~ 143 (679)
T 4e6h_A 64 TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLWL 143 (679)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHHH
T ss_pred CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHHH
Confidence 4566777777777777788888888887775 2 33456666666667777 7888888877654 5566666
Q ss_pred HHHHHHHHCCCh--------hHHHHHhhcCC------CC-CcccHHHHHHHHH---------hcCCHhHHHHHHHhccc
Q 007519 109 SMVVGLIRNGEL--------NEARKVFNSMP------IK-NVISWNAMIAGYV---------ECCMMGEAIVLFEEMEE 163 (600)
Q Consensus 109 ~l~~~~~~~~~~--------~~a~~~~~~~~------~~-~~~~~~~l~~~~~---------~~~~~~~A~~~~~~~~~ 163 (600)
..+....+.++. +...++|+... .+ +...|...+.... ..++++.+.++|+.+..
T Consensus 144 ~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~ 222 (679)
T 4e6h_A 144 SYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLC 222 (679)
T ss_dssp HHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHh
Confidence 666655554443 22335555532 11 2234555554432 23346677777777664
No 73
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.30 E-value=8.4e-11 Score=105.51 Aligned_cols=205 Identities=9% Similarity=0.024 Sum_probs=140.3
Q ss_pred CChhHHHHHHHHHhcccchhhhHHHHHHHhhhcCCCchhHHHHHHHHHHhcCChHHHHHHHhcCC---CCChhhHHHHHH
Q 007519 330 PLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMV---SRDLVSWNSMVM 406 (600)
Q Consensus 330 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~ 406 (600)
.|+..+......+...|++++|...+..+.+...+++...+..+..++...|++++|...|++.. +.+...|..+..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA 84 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 34566677777788888888888888888777654555666667788888888888888887765 345567777888
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCh-------hHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCCC---cchHHHHH
Q 007519 407 GFSHHGLANETLKVFESMLESGTHPNS-------VTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPG---PEHYVSMI 476 (600)
Q Consensus 407 ~~~~~~~~~~a~~~~~~m~~~~~~p~~-------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~l~ 476 (600)
++...|++++|+..+++..+.. +.+. ..|..+...+...|++++|.+.|+++.+ ..|+ ...+..++
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD---VTSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---SSCHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh---cCCCcccHHHHHHHH
Confidence 8888888888888888887742 2233 3355666677777888888888888774 3554 45667777
Q ss_pred HHHhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCCCcHHHHhHHH
Q 007519 477 NLLGRAGKIKEAEEFVLRLP--FEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIY 546 (600)
Q Consensus 477 ~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 546 (600)
.+|...|+. .++++. ...+...+..... . ..+.+++|+..++++++++|+++.+...+..+.
T Consensus 161 ~~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~--~-~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~ 224 (228)
T 4i17_A 161 VLFYNNGAD-----VLRKATPLASSNKEKYASEKA--K-ADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVK 224 (228)
T ss_dssp HHHHHHHHH-----HHHHHGGGTTTCHHHHHHHHH--H-HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHH-----HHHHHHhcccCCHHHHHHHHH--H-HHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 777655543 222221 1222333333322 2 456779999999999999998877777766554
No 74
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.29 E-value=3.4e-11 Score=103.98 Aligned_cols=161 Identities=14% Similarity=0.049 Sum_probs=81.6
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhcCC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhc
Q 007519 368 ILENCLISMYAKCGVIDNAYNIFSNMV---SRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACS 444 (600)
Q Consensus 368 ~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~ 444 (600)
..+..+...+...|++++|...++++. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 344555666666677777777776665 2345555666666666666666666666665542 233444445555555
Q ss_pred ccCchHHHHHHHHHHHhhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHhhhhCCHHHH
Q 007519 445 HAGLVSRGWELFNAMFDVYKIQP-GPEHYVSMINLLGRAGKIKEAEEFVLRLP--FEPDHRIWGALLGACGFCEGNAEIA 521 (600)
Q Consensus 445 ~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~g~~~~a 521 (600)
..|++++|.+.++++.+. .| +...+..++..+...|++++|.+.++++. .+.+...+..+...+. ..|++++|
T Consensus 88 ~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~-~~~~~~~A 163 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEA---NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYE-QMGRHEEA 163 (186)
T ss_dssp HHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHH
T ss_pred HhcCHHHHHHHHHHHHhc---CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHH-HcCCHHHH
Confidence 555555555555555543 22 23344444444444444444444444432 1112333333333343 44444444
Q ss_pred HHHHHHHHhhCC
Q 007519 522 EHAAKRLLELDP 533 (600)
Q Consensus 522 ~~~~~~~~~~~p 533 (600)
...++++++..|
T Consensus 164 ~~~~~~~~~~~~ 175 (186)
T 3as5_A 164 LPHFKKANELDE 175 (186)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHcCC
Confidence 444444444444
No 75
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.29 E-value=1.6e-10 Score=99.76 Aligned_cols=163 Identities=17% Similarity=0.126 Sum_probs=140.2
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCC-CcchHHHHHH
Q 007519 399 VSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQP-GPEHYVSMIN 477 (600)
Q Consensus 399 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~ 477 (600)
..|..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+. .| +...+..++.
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~a~ 84 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLAD---APDNVKVATVLGL 84 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCCHHHHHHHHH
Confidence 456777888999999999999999987642 445677888889999999999999999999875 44 5778889999
Q ss_pred HHhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCCCcHHHHhHHHHhhCCcHHH
Q 007519 478 LLGRAGKIKEAEEFVLRLP--FEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEE 555 (600)
Q Consensus 478 ~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 555 (600)
.+...|++++|.+.++++. .+.+...+..+...+. ..|++++|+..++++++..|+++.++..++.++...|++++|
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 163 (186)
T 3as5_A 85 TYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALD-NLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEA 163 (186)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHH-HcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHH
Confidence 9999999999999998874 3446677777888888 999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcC
Q 007519 556 HKLRMDMGLKG 566 (600)
Q Consensus 556 ~~~~~~~~~~~ 566 (600)
.+.++...+..
T Consensus 164 ~~~~~~~~~~~ 174 (186)
T 3as5_A 164 LPHFKKANELD 174 (186)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHcC
Confidence 99887765543
No 76
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.29 E-value=1.9e-09 Score=104.82 Aligned_cols=51 Identities=14% Similarity=-0.040 Sum_probs=23.6
Q ss_pred HHHHhcCChHHHHHHHhhCCC----CCh----hhHHHHHHHHHhCCChhHHHHHHHHHH
Q 007519 274 DGYLSVGQVSNAYYLFHNMPD----RDA----VAWTAMISGLVQNELFVEATYLFMEMR 324 (600)
Q Consensus 274 ~~~~~~~~~~~A~~~~~~~~~----~~~----~~~~~li~~~~~~g~~~~a~~~~~~m~ 324 (600)
..+...|++++|...+++... .+. .+++.+...+...|++++|...+++..
T Consensus 22 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 80 (373)
T 1hz4_A 22 QVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTE 80 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 344455555555555444211 111 123344444555555555555555544
No 77
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.28 E-value=3.6e-12 Score=120.53 Aligned_cols=97 Identities=10% Similarity=0.050 Sum_probs=57.4
Q ss_pred hhhHHHHHHHHHhCCChhHHHHHHHHHHHC-------CCCCChhHHHHHHHHHhcccchhhhHHHHHHHhhhc------C
Q 007519 297 AVAWTAMISGLVQNELFVEATYLFMEMRAH-------GVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTE------S 363 (600)
Q Consensus 297 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-------g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~ 363 (600)
..++..+...+...|++++|+.+++++.+. ..+.....+..+...+...|+++.|...+..+.+.. .
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 456788888888999999999999888763 112223345555556666667776666666554431 1
Q ss_pred -CCchhHHHHHHHHHHhcCChHHHHHHHhcC
Q 007519 364 -ESDLILENCLISMYAKCGVIDNAYNIFSNM 393 (600)
Q Consensus 364 -~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 393 (600)
+....++..+...|...|++++|...++++
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 137 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRA 137 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHH
Confidence 112334444455555555555555554443
No 78
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.27 E-value=1e-11 Score=117.35 Aligned_cols=244 Identities=13% Similarity=0.086 Sum_probs=139.3
Q ss_pred CchhHHHHHHHHHhcCChHHHHHHHhhCCC--------C---ChhhHHHHHHHHHhCCChhHHHHHHHHHHHC------C
Q 007519 265 DEISWTSMIDGYLSVGQVSNAYYLFHNMPD--------R---DAVAWTAMISGLVQNELFVEATYLFMEMRAH------G 327 (600)
Q Consensus 265 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--------~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------g 327 (600)
...++..+...+...|++++|...|+++.. . ...++..+...|...|++++|+..+++.... +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 445678888999999999999999988754 1 2356788889999999999999999998764 2
Q ss_pred CCC-ChhHHHHHHHHHhcccchhhhHHHHHHHhhhcCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHH
Q 007519 328 VPP-LNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVM 406 (600)
Q Consensus 328 ~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~ 406 (600)
-.| ....+..+...+...|+++.|...+..+.+..... +..-.+.....+..+..
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~------------------------~~~~~~~~~~~~~~la~ 161 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKV------------------------LGKDHPDVAKQLNNLAL 161 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHH------------------------HCTTCHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHh------------------------cCCCChHHHHHHHHHHH
Confidence 223 24567778888999999999999998766531000 00000011223444455
Q ss_pred HHHhcCChHHHHHHHHHHHHc------CCCCC-hhHHHHHHHHhcccCchHHHHHHHHHHHhhc------CCCCC-cchH
Q 007519 407 GFSHHGLANETLKVFESMLES------GTHPN-SVTFLGILSACSHAGLVSRGWELFNAMFDVY------KIQPG-PEHY 472 (600)
Q Consensus 407 ~~~~~~~~~~a~~~~~~m~~~------~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~------~~~p~-~~~~ 472 (600)
.+...|++++|+++++++.+. +..|. ..++..+..++...|++++|.+.++++.+.. ...+. ...+
T Consensus 162 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 241 (311)
T 3nf1_A 162 LCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIW 241 (311)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHH
Confidence 555555555555555555442 11222 2344555566666666666666666665421 11121 1122
Q ss_pred HH------HHHHHhhcCChHHHHHHHHhCC-CCCC-HHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCC
Q 007519 473 VS------MINLLGRAGKIKEAEEFVLRLP-FEPD-HRIWGALLGACGFCEGNAEIAEHAAKRLLELDP 533 (600)
Q Consensus 473 ~~------l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p 533 (600)
.. +...+...+.+.+|...+.... ..|+ ..++..+...+. ..|++++|+..+++++++.|
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~l~~ 309 (311)
T 3nf1_A 242 MHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYR-RQGKFEAAETLEEAAMRSRK 309 (311)
T ss_dssp HHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHhh
Confidence 11 2222233344444444454443 2232 345566666666 77777777777777777665
No 79
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.26 E-value=1e-09 Score=106.85 Aligned_cols=226 Identities=9% Similarity=0.037 Sum_probs=108.2
Q ss_pred HHHHHhCCChhHHHHHHHHHHHCCC-CCC----hhHHHHHHHHHhcccchhhhHHHHHHHhhhcCC------CchhHHHH
Q 007519 304 ISGLVQNELFVEATYLFMEMRAHGV-PPL----NATFSVLFGAAGATANIDLGRQIHCVLMKTESE------SDLILENC 372 (600)
Q Consensus 304 i~~~~~~g~~~~a~~~~~~m~~~g~-~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~------~~~~~~~~ 372 (600)
...+...|++++|+..|++..+... .++ ..++..+...+...|+++.|...+..+.+.... ....+++.
T Consensus 108 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 187 (378)
T 3q15_A 108 GMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFV 187 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHH
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHH
Confidence 3445566677777777666654310 112 123344444555555555555555543332110 01233445
Q ss_pred HHHHHHhcCChHHHHHHHhcCCC-----CC----hhhHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCCChhHHHHH
Q 007519 373 LISMYAKCGVIDNAYNIFSNMVS-----RD----LVSWNSMVMGFSHHGLANETLKVFESMLES----GTHPNSVTFLGI 439 (600)
Q Consensus 373 l~~~~~~~~~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~p~~~~~~~l 439 (600)
+...|...|++++|...|++... ++ ..++..+..+|...|++++|+..+++..+. +.+....++..+
T Consensus 188 lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l 267 (378)
T 3q15_A 188 IAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGL 267 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHH
Confidence 55555555666555555554431 11 234445555566666666666666655541 111223444555
Q ss_pred HHHhcccCchHHHHHHHHHHHhhcCCCCC---cchHHHHHHHHhhcCC---hHHHHHHHHhCCCCCCHH-HHHHHHHHHh
Q 007519 440 LSACSHAGLVSRGWELFNAMFDVYKIQPG---PEHYVSMINLLGRAGK---IKEAEEFVLRLPFEPDHR-IWGALLGACG 512 (600)
Q Consensus 440 ~~~~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~p~~~-~~~~l~~~~~ 512 (600)
...+...|++++|...+++..+...-.++ ...+..+...|...|+ +++|...+++....|+.. .+..+...+.
T Consensus 268 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~ 347 (378)
T 3q15_A 268 SWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVFE 347 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHH
Confidence 55556666666666666655543221111 2233444445555555 555555555544333222 2333333444
Q ss_pred hhhCCHHHHHHHHHHHHh
Q 007519 513 FCEGNAEIAEHAAKRLLE 530 (600)
Q Consensus 513 ~~~g~~~~a~~~~~~~~~ 530 (600)
..|++++|...++++++
T Consensus 348 -~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 348 -SSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp -HTTCHHHHHHHHHHHHH
T ss_pred -HCCCHHHHHHHHHHHHH
Confidence 55566666655555554
No 80
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.25 E-value=5.8e-11 Score=119.02 Aligned_cols=178 Identities=9% Similarity=-0.018 Sum_probs=152.6
Q ss_pred hHHHHHHHhcCC---CCChhhHHHHHHHHHhcCCh-HHHHHHHHHHHHcCCCCChhHHHHHHHHhcccCchHHHHHHHHH
Q 007519 383 IDNAYNIFSNMV---SRDLVSWNSMVMGFSHHGLA-NETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNA 458 (600)
Q Consensus 383 ~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 458 (600)
++++...++... +.+...+..+...+...|++ ++|++.|++..+.. +.+...+..+..+|...|++++|.+.|++
T Consensus 84 ~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 455555555443 45778899999999999999 99999999999863 34467888999999999999999999999
Q ss_pred HHhhcCCCCCcchHHHHHHHHhhc---------CChHHHHHHHHhCC-CCC-CHHHHHHHHHHHhhhh--------CCHH
Q 007519 459 MFDVYKIQPGPEHYVSMINLLGRA---------GKIKEAEEFVLRLP-FEP-DHRIWGALLGACGFCE--------GNAE 519 (600)
Q Consensus 459 ~~~~~~~~p~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~--------g~~~ 519 (600)
+.+. .|+...+..++.+|... |++++|.+.+++.. ..| +...|..+..++. .. |+++
T Consensus 163 al~~---~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~-~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 163 ALTH---CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYL-SLYFNTGQNPKISQ 238 (474)
T ss_dssp HHTT---CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHHHHTTCCHHHHH
T ss_pred HHhh---CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HHHHhhccccchHH
Confidence 9854 68888999999999999 99999999999874 444 5678888888888 88 9999
Q ss_pred HHHHHHHHHHhhCC---CCCCcHHHHhHHHHhhCCcHHHHHHHHHHhhc
Q 007519 520 IAEHAAKRLLELDP---LNAPAHVVLCNIYAASGRHVEEHKLRMDMGLK 565 (600)
Q Consensus 520 ~a~~~~~~~~~~~p---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 565 (600)
+|+..++++++++| +++.++..++.+|...|++++|.+.++...+.
T Consensus 239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 287 (474)
T 4abn_A 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAAL 287 (474)
T ss_dssp HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999999999999 99999999999999999999999977666543
No 81
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.25 E-value=1.3e-10 Score=104.32 Aligned_cols=185 Identities=12% Similarity=0.015 Sum_probs=84.4
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhcCC---C-CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHH
Q 007519 368 ILENCLISMYAKCGVIDNAYNIFSNMV---S-RDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPN-SVTFLGILSA 442 (600)
Q Consensus 368 ~~~~~l~~~~~~~~~~~~A~~~~~~~~---~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~ 442 (600)
..+......+...|++++|...|++.. + ++...+..+..++...|++++|+..+++..+. .|+ ...+..+..+
T Consensus 8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~ 85 (228)
T 4i17_A 8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK--NYNLANAYIGKSAA 85 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh--CcchHHHHHHHHHH
Confidence 444444555555555555555555443 2 34444444555555555555555555555542 222 2344444455
Q ss_pred hcccCchHHHHHHHHHHHhhcCCCCC-c-------chHHHHHHHHhhcCChHHHHHHHHhCC-CCCC--H-HHHHHHHHH
Q 007519 443 CSHAGLVSRGWELFNAMFDVYKIQPG-P-------EHYVSMINLLGRAGKIKEAEEFVLRLP-FEPD--H-RIWGALLGA 510 (600)
Q Consensus 443 ~~~~g~~~~a~~~~~~~~~~~~~~p~-~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~--~-~~~~~l~~~ 510 (600)
+...|++++|...++++.+. .|+ . ..|..++..+...|++++|.+.+++.. ..|+ . ..+..+...
T Consensus 86 ~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 162 (228)
T 4i17_A 86 YRDMKNNQEYIATLTEGIKA---VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVL 162 (228)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHH
Confidence 55555555555555555443 232 2 234444455555555555555554432 3343 2 223333333
Q ss_pred HhhhhCCHHHHHHHHHHHHhhCCCCCCcHHHHhHHHHhhCCcHHHHHHHHHHhhc
Q 007519 511 CGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLK 565 (600)
Q Consensus 511 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 565 (600)
+. .. +...++++..+.+.++..+.. ......|.+++|...++...+.
T Consensus 163 ~~-~~-----~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~~~A~~~~~~a~~l 209 (228)
T 4i17_A 163 FY-NN-----GADVLRKATPLASSNKEKYAS--EKAKADAAFKKAVDYLGEAVTL 209 (228)
T ss_dssp HH-HH-----HHHHHHHHGGGTTTCHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HH-HH-----HHHHHHHHHhcccCCHHHHHH--HHHHHHHHHHHHHHHHHHHhhc
Confidence 32 22 222334444444333222221 1223334458898877665544
No 82
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.18 E-value=1.2e-09 Score=106.31 Aligned_cols=230 Identities=11% Similarity=-0.016 Sum_probs=114.9
Q ss_pred HHHHHHhcCChhHHHHHHccCCC-----CC----cchHHHHHHHHHhcCChhHHHHHHHHHHhhhcCCCC--C-ChhhHH
Q 007519 172 MISGYCRAGEVEEGYCLFRRMPR-----KN----VVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNN--C-NVQSCN 239 (600)
Q Consensus 172 l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~-~~~~~~ 239 (600)
....+...|++++|...|++..+ ++ ..++..+...+...|+++.|+..+++..+.+..... + ...+++
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 34455667777777777765542 22 235667777777788888888877777765322111 1 134566
Q ss_pred HHHHHHHhcCChhhHHHHhcccCCCCchhHHHHHHHHHhcCChHHHHHHHhhCCCC--ChhhHHHHHHHHHhCCChhHHH
Q 007519 240 SMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDR--DAVAWTAMISGLVQNELFVEAT 317 (600)
Q Consensus 240 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~a~ 317 (600)
.+..+|...|++++|...+++... +......+ ...++..+...|...|++++|+
T Consensus 187 ~lg~~y~~~~~~~~A~~~~~~al~------------------------~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~ 242 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPHLEAALE------------------------LAMDIQNDRFIAISLLNIANSYDRSGDDQMAV 242 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH------------------------HHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHH------------------------HHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 666777777777777776655431 11111110 1123444555555555555555
Q ss_pred HHHHHHHHC----CCCCChhHHHHHHHHHhcccchhhhHHHHHHHhhhcCC----CchhHHHHHHHHHHhcCC---hHHH
Q 007519 318 YLFMEMRAH----GVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESE----SDLILENCLISMYAKCGV---IDNA 386 (600)
Q Consensus 318 ~~~~~m~~~----g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~---~~~A 386 (600)
..|++..+. +.+....++..+..++.+.|+.+.|...++...+.... .....+..+...+...++ +.+|
T Consensus 243 ~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~a 322 (378)
T 3q15_A 243 EHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDL 322 (378)
T ss_dssp HHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHH
T ss_pred HHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence 555554431 11111233444444444555555555554443332111 111223333344444444 5555
Q ss_pred HHHHhcCCC--CChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 007519 387 YNIFSNMVS--RDLVSWNSMVMGFSHHGLANETLKVFESML 425 (600)
Q Consensus 387 ~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 425 (600)
...+++... .....+..+...|...|++++|...|++..
T Consensus 323 l~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al 363 (378)
T 3q15_A 323 LSYFEKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVL 363 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhCCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 555554331 112234445555556666666666555544
No 83
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.15 E-value=4.4e-10 Score=104.93 Aligned_cols=185 Identities=12% Similarity=0.026 Sum_probs=118.1
Q ss_pred HHHHhcCChHHHHHHHhcCCC-------C--ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCC---CCC--hhHHHHHH
Q 007519 375 SMYAKCGVIDNAYNIFSNMVS-------R--DLVSWNSMVMGFSHHGLANETLKVFESMLESGT---HPN--SVTFLGIL 440 (600)
Q Consensus 375 ~~~~~~~~~~~A~~~~~~~~~-------~--~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~---~p~--~~~~~~l~ 440 (600)
..|...|++++|...|.+... + ...+|+.+..+|...|++++|+..+++..+... .+. ..++..+.
T Consensus 45 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg 124 (292)
T 1qqe_A 45 TIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELG 124 (292)
T ss_dssp HHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 345566777766666665531 1 134677777788888888888888877665311 111 24566777
Q ss_pred HHhccc-CchHHHHHHHHHHHhhcCCCCC----cchHHHHHHHHhhcCChHHHHHHHHhCC-CCCCH--------HHHHH
Q 007519 441 SACSHA-GLVSRGWELFNAMFDVYKIQPG----PEHYVSMINLLGRAGKIKEAEEFVLRLP-FEPDH--------RIWGA 506 (600)
Q Consensus 441 ~~~~~~-g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~--------~~~~~ 506 (600)
..|... |++++|...|+++.+...-..+ ..++..++..|.+.|++++|...+++.. ..|+. ..+..
T Consensus 125 ~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 204 (292)
T 1qqe_A 125 EILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLK 204 (292)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHH
T ss_pred HHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHH
Confidence 778875 8889888888888764211111 3467788888899999999998888753 22321 14555
Q ss_pred HHHHHhhhhCCHHHHHHHHHHHHhhCCCCCCc-----HHHHhHHHH--hhCCcHHHHHHHH
Q 007519 507 LLGACGFCEGNAEIAEHAAKRLLELDPLNAPA-----HVVLCNIYA--ASGRHVEEHKLRM 560 (600)
Q Consensus 507 l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~-----~~~l~~~~~--~~g~~~~A~~~~~ 560 (600)
+..++. ..|++++|+..++++++++|+.+.. +..++.++. ..+++++|...++
T Consensus 205 lg~~~~-~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~ 264 (292)
T 1qqe_A 205 KGLCQL-AATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFD 264 (292)
T ss_dssp HHHHHH-HTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHT
T ss_pred HHHHHH-HcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhc
Confidence 666666 8899999999999999988865543 334555554 4466777777663
No 84
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.14 E-value=1.1e-08 Score=99.34 Aligned_cols=217 Identities=11% Similarity=-0.075 Sum_probs=98.5
Q ss_pred HHHhcCChhHHHHHHHHHHhhhcCCCCCCh----hhHHHHHHHHHhcCChhhHHHHhcccCC-----CCc----hhHHHH
Q 007519 206 GFAWNGFHKESLLLFIEMKGICDNGNNCNV----QSCNSMINGYIRFGRLEEAQNLFDTVPV-----RDE----ISWTSM 272 (600)
Q Consensus 206 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~----~~~~~l 272 (600)
.+...|++++|...+++.... ....+. .+++.+...+...|++++|...+++... .+. .++..+
T Consensus 23 ~~~~~g~~~~A~~~~~~al~~---~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 99 (373)
T 1hz4_A 23 VAINDGNPDEAERLAKLALEE---LPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ 99 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHT---CCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHc---CCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 344556666666666555543 101111 1233444455555555555555554431 111 112334
Q ss_pred HHHHHhcCChHHHHHHHhhCCC-------C----ChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCC----ChhHHHH
Q 007519 273 IDGYLSVGQVSNAYYLFHNMPD-------R----DAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPP----LNATFSV 337 (600)
Q Consensus 273 ~~~~~~~~~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p----~~~~~~~ 337 (600)
...+...|++++|...+++... + ....+..+...+...|++++|...+++........ ...++..
T Consensus 100 a~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 179 (373)
T 1hz4_A 100 SEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAM 179 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHH
Confidence 4444455555555544443321 1 11234445556666677777766666655432111 1123444
Q ss_pred HHHHHhcccchhhhHHHHHHHhhhcCCCch-hHHH-----HHHHHHHhcCChHHHHHHHhcCCCCC-------hhhHHHH
Q 007519 338 LFGAAGATANIDLGRQIHCVLMKTESESDL-ILEN-----CLISMYAKCGVIDNAYNIFSNMVSRD-------LVSWNSM 404 (600)
Q Consensus 338 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~-----~l~~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~l 404 (600)
+...+...|+++.|...++........++. ..+. ..+..+...|++++|...+++...+. ...+..+
T Consensus 180 la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~l 259 (373)
T 1hz4_A 180 LIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNI 259 (373)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHH
Confidence 444555566666666666554433211111 0111 12233445566666666665554221 1123344
Q ss_pred HHHHHhcCChHHHHHHHHHHH
Q 007519 405 VMGFSHHGLANETLKVFESML 425 (600)
Q Consensus 405 ~~~~~~~~~~~~a~~~~~~m~ 425 (600)
...+...|++++|...+++..
T Consensus 260 a~~~~~~g~~~~A~~~l~~a~ 280 (373)
T 1hz4_A 260 ARAQILLGEFEPAEIVLEELN 280 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHH
Confidence 455555555555555555543
No 85
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.13 E-value=4.4e-10 Score=117.18 Aligned_cols=162 Identities=12% Similarity=0.140 Sum_probs=139.3
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHhcCC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHH
Q 007519 366 DLILENCLISMYAKCGVIDNAYNIFSNMV---SRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPN-SVTFLGILS 441 (600)
Q Consensus 366 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~ 441 (600)
+...++.|..+|.+.|++++|+..|++.. +.+...|..+..+|.+.|++++|+..|++..+. .|+ ...|..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--~P~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 45677888899999999999999998876 556788999999999999999999999999885 454 578888899
Q ss_pred HhcccCchHHHHHHHHHHHhhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHhhhhCCH
Q 007519 442 ACSHAGLVSRGWELFNAMFDVYKIQP-GPEHYVSMINLLGRAGKIKEAEEFVLRLP-FEP-DHRIWGALLGACGFCEGNA 518 (600)
Q Consensus 442 ~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~g~~ 518 (600)
++...|++++|.+.|+++.+. .| +...+..++.+|.+.|++++|++.+++.. ..| +...+..+...+. ..|++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l---~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~-~~g~~ 161 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQI---NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQ-IVCDW 161 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHH-HTTCC
T ss_pred HHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHH-hcccH
Confidence 999999999999999999864 67 57889999999999999999999998864 556 4667888888888 99999
Q ss_pred HHHHHHHHHHHhhCC
Q 007519 519 EIAEHAAKRLLELDP 533 (600)
Q Consensus 519 ~~a~~~~~~~~~~~p 533 (600)
++|++.+++++++.|
T Consensus 162 ~~A~~~~~kal~l~~ 176 (723)
T 4gyw_A 162 TDYDERMKKLVSIVA 176 (723)
T ss_dssp TTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCh
Confidence 999999999988654
No 86
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.08 E-value=2.3e-09 Score=98.33 Aligned_cols=186 Identities=12% Similarity=0.004 Sum_probs=126.2
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHhcCC--CC-C---hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCC-hhHHH
Q 007519 366 DLILENCLISMYAKCGVIDNAYNIFSNMV--SR-D---LVSWNSMVMGFSHHGLANETLKVFESMLESGT-HPN-SVTFL 437 (600)
Q Consensus 366 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~-~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~p~-~~~~~ 437 (600)
+...+..+...+.+.|++++|...|+++. .| + ...+..+..++...|++++|+..|++..+... .|. ...+.
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 34444556666777788888888877765 22 3 45667777788888888888888888877521 111 23455
Q ss_pred HHHHHhcc--------cCchHHHHHHHHHHHhhcCCCCC-cchH-----------------HHHHHHHhhcCChHHHHHH
Q 007519 438 GILSACSH--------AGLVSRGWELFNAMFDVYKIQPG-PEHY-----------------VSMINLLGRAGKIKEAEEF 491 (600)
Q Consensus 438 ~l~~~~~~--------~g~~~~a~~~~~~~~~~~~~~p~-~~~~-----------------~~l~~~~~~~g~~~~A~~~ 491 (600)
.+..++.. .|++++|...|+++.+. .|+ .... ..++..|.+.|++++|...
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 170 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR---YPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVT 170 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH---CTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHH---CcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHH
Confidence 55566666 78888888888888765 342 2333 5668889999999999999
Q ss_pred HHhCC-CCCC----HHHHHHHHHHHhhhh----------CCHHHHHHHHHHHHhhCCCCCC---cHHHHhHHHHhhCCcH
Q 007519 492 VLRLP-FEPD----HRIWGALLGACGFCE----------GNAEIAEHAAKRLLELDPLNAP---AHVVLCNIYAASGRHV 553 (600)
Q Consensus 492 ~~~~~-~~p~----~~~~~~l~~~~~~~~----------g~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~ 553 (600)
++++. ..|+ ...+..+..++. .. |++++|+..++++++..|+++. +...+..++...|+++
T Consensus 171 ~~~~l~~~p~~~~~~~a~~~l~~~~~-~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~~~~~~~~~~ 249 (261)
T 3qky_A 171 YEAVFDAYPDTPWADDALVGAMRAYI-AYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAEELYTRARQRLTELE 249 (261)
T ss_dssp HHHHHHHCTTSTTHHHHHHHHHHHHH-HHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCchHHHHHHHHHHHHH-HhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHhh
Confidence 98863 3333 345566666665 55 8899999999999999997753 3445555555555554
Q ss_pred HH
Q 007519 554 EE 555 (600)
Q Consensus 554 ~A 555 (600)
++
T Consensus 250 ~~ 251 (261)
T 3qky_A 250 GD 251 (261)
T ss_dssp TC
T ss_pred hh
Confidence 43
No 87
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.07 E-value=1e-08 Score=93.51 Aligned_cols=242 Identities=11% Similarity=0.041 Sum_probs=154.8
Q ss_pred HHhcCChHHHHHHHhhCCCCChh-hHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhcccchhhhHHH
Q 007519 276 YLSVGQVSNAYYLFHNMPDRDAV-AWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQI 354 (600)
Q Consensus 276 ~~~~~~~~~A~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~ 354 (600)
..-.|.+..++.-...+...+.. .-.-+.++|...|++... ..-.|....+..+...+ ..+ +...
T Consensus 23 ~fy~G~yq~~i~e~~~~~~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~-~~~----a~~~ 88 (310)
T 3mv2_B 23 NYYTGNFVQCLQEIEKFSKVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFL-DTK----NIEE 88 (310)
T ss_dssp HHTTTCHHHHTHHHHTSSCCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHH-TTT----CCHH
T ss_pred HHHhhHHHHHHHHHHhcCccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHh-ccc----HHHH
Confidence 34568888888766665442222 222344677777777642 11233333443333333 222 6677
Q ss_pred HHHHhhhcCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC-----CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 007519 355 HCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVS-----RDLVSWNSMVMGFSHHGLANETLKVFESMLESGT 429 (600)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~ 429 (600)
++...+.+ .++......+..++...|++++|++++.+... .+...+..++..+.+.|+.+.|.+.+++|.+.
T Consensus 89 l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~-- 165 (310)
T 3mv2_B 89 LENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA-- 165 (310)
T ss_dssp HHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred HHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--
Confidence 77666554 33444445777888888999999999888742 34566777788888999999999999998774
Q ss_pred CC-----ChhHHHHHHHHh--cccC--chHHHHHHHHHHHhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhCCC---
Q 007519 430 HP-----NSVTFLGILSAC--SHAG--LVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPF--- 497 (600)
Q Consensus 430 ~p-----~~~~~~~l~~~~--~~~g--~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--- 497 (600)
.| +..+...+..++ ...| +.+.|..+|+++.+. .|+...-..+..++.+.|++++|.+.++.+..
T Consensus 166 ~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p 242 (310)
T 3mv2_B 166 IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYY 242 (310)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHH
T ss_pred CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 66 355555565553 2233 888899999988754 34422233344478888999999988876431
Q ss_pred --------CCC-HHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCCCcHH
Q 007519 498 --------EPD-HRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHV 540 (600)
Q Consensus 498 --------~p~-~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 540 (600)
.|+ +.++..++.... ..|+ +|.++++++.+..|++|.+..
T Consensus 243 ~~~~k~~~~p~~~~~LaN~i~l~~-~lgk--~a~~l~~qL~~~~P~hp~i~d 291 (310)
T 3mv2_B 243 SVEQKENAVLYKPTFLANQITLAL-MQGL--DTEDLTNQLVKLDHEHAFIKH 291 (310)
T ss_dssp HTTTCHHHHSSHHHHHHHHHHHHH-HTTC--TTHHHHHHHHHTTCCCHHHHH
T ss_pred cccccccCCCCCHHHHHHHHHHHH-HhCh--HHHHHHHHHHHhCCCChHHHH
Confidence 244 445545555555 5676 788889999999997765544
No 88
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.07 E-value=1.3e-08 Score=92.90 Aligned_cols=174 Identities=10% Similarity=0.016 Sum_probs=94.0
Q ss_pred HHHHHhcCC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-ChhHHHHHHHHhcccCchHHHHHHHHHHHh
Q 007519 386 AYNIFSNMV---SRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHP-NSVTFLGILSACSHAGLVSRGWELFNAMFD 461 (600)
Q Consensus 386 A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 461 (600)
|...|++.. .++..++..+..++...|++++|++++.+....+-.+ +...+..++..+.+.|+.+.|.+.+++|.+
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 445555443 2334444455566666666777766666655433211 234455555666666667777766666654
Q ss_pred hcCCCC-----CcchHHHHHHH--HhhcC--ChHHHHHHHHhCC-CCCCHHHHHHHHHHHhhhhCCHHHHHHHHHHHHhh
Q 007519 462 VYKIQP-----GPEHYVSMINL--LGRAG--KIKEAEEFVLRLP-FEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLEL 531 (600)
Q Consensus 462 ~~~~~p-----~~~~~~~l~~~--~~~~g--~~~~A~~~~~~~~-~~p~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~ 531 (600)
. .| +..+...|+.+ ....| ++++|..+|+++. ..|+..+-..++.++. ..|++++|...++++.+.
T Consensus 165 ~---~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~-~~g~~~eAe~~L~~l~~~ 240 (310)
T 3mv2_B 165 A---IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHL-QQRNIAEAQGIVELLLSD 240 (310)
T ss_dssp H---SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHH-HHTCHHHHHHHHHHHHSH
T ss_pred c---CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHH-HcCCHHHHHHHHHHHHHh
Confidence 3 44 23344444433 22233 6666666666654 3344222223333444 666677776666665554
Q ss_pred ----------CCCCCCcHHHHhHHHHhhCCcHHHHHHHHHHhhc
Q 007519 532 ----------DPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLK 565 (600)
Q Consensus 532 ----------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 565 (600)
+|+++.++..++......|+ +|.++++.+++.
T Consensus 241 ~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 241 YYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp HHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred cccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 35566666565555555665 566666555543
No 89
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.05 E-value=1.2e-10 Score=96.40 Aligned_cols=138 Identities=11% Similarity=0.001 Sum_probs=82.7
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCC-CcchHHHHHHHHhhcCCh
Q 007519 408 FSHHGLANETLKVFESMLESGTHPN-SVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQP-GPEHYVSMINLLGRAGKI 485 (600)
Q Consensus 408 ~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~ 485 (600)
+...|++++|+..++..... .|+ ...+..+...|...|++++|.+.|+++.+. .| ++..|..++.+|.+.|++
T Consensus 7 ~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~---~p~~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 7 RRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV---QERDPKAHRFLGLLYELEENT 81 (150)
T ss_dssp CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCch
Confidence 34445566666666555431 222 233444556666666666666666666643 45 456666666777777777
Q ss_pred HHHHHHHHhCC-CCC-CHHHHHHHHHHHhhhhCCHHHHHHH-HHHHHhhCCCCCCcHHHHhHHHHhhCC
Q 007519 486 KEAEEFVLRLP-FEP-DHRIWGALLGACGFCEGNAEIAEHA-AKRLLELDPLNAPAHVVLCNIYAASGR 551 (600)
Q Consensus 486 ~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~g~~~~a~~~-~~~~~~~~p~~~~~~~~l~~~~~~~g~ 551 (600)
++|...|++.. ..| +...+..+...+. ..|+.++|.+. ++++++++|+++.+|.....++...|+
T Consensus 82 ~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 82 DKAVECYRRSVELNPTQKDLVLKIAELLC-KNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 77776666653 344 3455666666666 66766555443 477777777777777777666666664
No 90
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.03 E-value=7.3e-09 Score=94.92 Aligned_cols=170 Identities=14% Similarity=0.058 Sum_probs=134.8
Q ss_pred CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC---hhHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCCC-cc
Q 007519 395 SRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPN---SVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPG-PE 470 (600)
Q Consensus 395 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~ 470 (600)
+.+...+-.+...+...|++++|+..|+++.+.. +.+ ...+..+..++...|++++|...|+++.+.+.-.|. ..
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 90 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ 90 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence 4566777788889999999999999999998753 223 456777888999999999999999999986332332 55
Q ss_pred hHHHHHHHHhh--------cCChHHHHHHHHhCC-CCCCH-HHH-----------------HHHHHHHhhhhCCHHHHHH
Q 007519 471 HYVSMINLLGR--------AGKIKEAEEFVLRLP-FEPDH-RIW-----------------GALLGACGFCEGNAEIAEH 523 (600)
Q Consensus 471 ~~~~l~~~~~~--------~g~~~~A~~~~~~~~-~~p~~-~~~-----------------~~l~~~~~~~~g~~~~a~~ 523 (600)
.+..++.++.. .|++++|.+.|+++. ..|+. ... ..+...+. ..|++++|+.
T Consensus 91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~ 169 (261)
T 3qky_A 91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYE-RRELYEAAAV 169 (261)
T ss_dssp HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HccCHHHHHH
Confidence 67788999988 999999999998864 33432 222 34455667 9999999999
Q ss_pred HHHHHHhhCCCCC---CcHHHHhHHHHhh----------CCcHHHHHHHHHHhhcC
Q 007519 524 AAKRLLELDPLNA---PAHVVLCNIYAAS----------GRHVEEHKLRMDMGLKG 566 (600)
Q Consensus 524 ~~~~~~~~~p~~~---~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~ 566 (600)
.++++++..|+++ ..+..++.+|... |++++|...++.+.+..
T Consensus 170 ~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~ 225 (261)
T 3qky_A 170 TYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF 225 (261)
T ss_dssp HHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC
Confidence 9999999999754 4788999999877 89999999887766543
No 91
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.03 E-value=3.9e-10 Score=104.73 Aligned_cols=30 Identities=20% Similarity=0.224 Sum_probs=17.1
Q ss_pred CCCCCcHHHHhHHHHhhCCcHHHHHHHHHH
Q 007519 533 PLNAPAHVVLCNIYAASGRHVEEHKLRMDM 562 (600)
Q Consensus 533 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 562 (600)
|..+.++..++.+|...|++++|..+++..
T Consensus 249 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 278 (283)
T 3edt_B 249 PTVNTTLRSLGALYRRQGKLEAAHTLEDCA 278 (283)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 333445556666666666666666655443
No 92
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.02 E-value=1e-09 Score=115.17 Aligned_cols=145 Identities=12% Similarity=-0.030 Sum_probs=65.4
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCC-CcchHHHHH
Q 007519 398 LVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQP-GPEHYVSMI 476 (600)
Q Consensus 398 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~ 476 (600)
...+..+..++...|++++|+..|++..+.. +.+...+..+..++...|++++|.+.|+++.+. .| +...+..++
T Consensus 433 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l---~P~~~~~~~~lg 508 (681)
T 2pzi_A 433 VELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLTGDYDSATKHFTEVLDT---FPGELAPKLALA 508 (681)
T ss_dssp SHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---STTCSHHHHHHH
T ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCChHHHHHHH
Confidence 3444444444444555555555554444421 222334444444444445555555555544432 33 244444444
Q ss_pred HHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCCCcHHHHhHHHHh
Q 007519 477 NLLGRAGKIKEAEEFVLRLP-FEP-DHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAA 548 (600)
Q Consensus 477 ~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 548 (600)
.+|.+.|++++ .+.|++.. ..| +...+..+..++. ..|++++|+..++++++++|+++.++..++.++..
T Consensus 509 ~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~-~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~ 580 (681)
T 2pzi_A 509 ATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARS-AEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLS 580 (681)
T ss_dssp HHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC-
T ss_pred HHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHH-HcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHc
Confidence 45555555544 44444432 222 2334444444444 44555555555555555555444444444444443
No 93
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.02 E-value=3.6e-09 Score=93.06 Aligned_cols=125 Identities=9% Similarity=0.055 Sum_probs=97.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCC-CcchHHHHHHHHhhc
Q 007519 404 MVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQP-GPEHYVSMINLLGRA 482 (600)
Q Consensus 404 l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~ 482 (600)
+..++...|++++|+..|++..+.. +-+...+..+..++...|++++|...|+++.+. .| +...+..++.+|...
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~lg~~~~~~ 135 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQL---EADNLAANIFLGNYYYLT 135 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHH
Confidence 8889999999999999999999863 445677888889999999999999999999875 67 578899999988776
Q ss_pred CC--hHHHHHHHHhCCCCCCHH--HHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCC
Q 007519 483 GK--IKEAEEFVLRLPFEPDHR--IWGALLGACGFCEGNAEIAEHAAKRLLELDPL 534 (600)
Q Consensus 483 g~--~~~A~~~~~~~~~~p~~~--~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~ 534 (600)
|+ .+.+...+++.. .|++. .+.....++. ..|++++|+..+++++++.|+
T Consensus 136 ~~~~~~~~~~~~~~~~-~~~~~~~a~~~~g~~~~-~~~~~~~A~~~~~~al~l~P~ 189 (208)
T 3urz_A 136 AEQEKKKLETDYKKLS-SPTKMQYARYRDGLSKL-FTTRYEKARNSLQKVILRFPS 189 (208)
T ss_dssp HHHHHHHHHHHHC----CCCHHHHHHHHHHHHHH-HHHTHHHHHHHHHHHTTTSCC
T ss_pred hHHHHHHHHHHHHHHh-CCCchhHHHHHHHHHHH-HccCHHHHHHHHHHHHHhCCC
Confidence 64 445666666654 34433 3444444556 789999999999999999994
No 94
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.01 E-value=1e-08 Score=91.55 Aligned_cols=183 Identities=7% Similarity=-0.038 Sum_probs=115.7
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhcCC--CCC----hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChh----HH
Q 007519 367 LILENCLISMYAKCGVIDNAYNIFSNMV--SRD----LVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSV----TF 436 (600)
Q Consensus 367 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~----~~ 436 (600)
...+..+...+...|++++|...|+++. .|+ ...+..+..++...|++++|+..|+++.+. .|+.. .+
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~P~~~~~~~a~ 81 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYVM 81 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCcHHHHH
Confidence 3344456667777888888888888775 232 245666777788888888888888887764 33322 23
Q ss_pred HHHHHHhcc------------------cCchHHHHHHHHHHHhhcCCCCC-cchHHHHHHHHhhcCChHHHHHHHHhCCC
Q 007519 437 LGILSACSH------------------AGLVSRGWELFNAMFDVYKIQPG-PEHYVSMINLLGRAGKIKEAEEFVLRLPF 497 (600)
Q Consensus 437 ~~l~~~~~~------------------~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 497 (600)
..+..++.. .|++++|...|+++.+. .|+ ...+..+.....-.+..
T Consensus 82 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~P~~~~a~~a~~~l~~~~~~~------------ 146 (225)
T 2yhc_A 82 YMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG---YPNSQYTTDATKRLVFLKDRL------------ 146 (225)
T ss_dssp HHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT---CTTCTTHHHHHHHHHHHHHHH------------
T ss_pred HHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH---CcCChhHHHHHHHHHHHHHHH------------
Confidence 333333332 45666666666666643 342 22222111100000000
Q ss_pred CCCHHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCC---CcHHHHhHHHHhhCCcHHHHHHHHHHhhcCCccC
Q 007519 498 EPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNA---PAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKV 570 (600)
Q Consensus 498 ~p~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 570 (600)
......+...+. ..|++++|+..++++++..|+++ .++..++.++.+.|++++|.+.++.+...+...+
T Consensus 147 ---~~~~~~~a~~~~-~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~ 218 (225)
T 2yhc_A 147 ---AKYEYSVAEYYT-ERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTL 218 (225)
T ss_dssp ---HHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCC
T ss_pred ---HHHHHHHHHHHH-HcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCch
Confidence 001123344566 89999999999999999999765 5688999999999999999999988887765443
No 95
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.99 E-value=8.4e-09 Score=95.57 Aligned_cols=198 Identities=13% Similarity=0.078 Sum_probs=115.3
Q ss_pred HHHHHHHHHhcccchhhhHHHHHHHhhh------cC-CCchhHHHHHHHHHHhcCChHHHHHHHhcCCC-------C---
Q 007519 334 TFSVLFGAAGATANIDLGRQIHCVLMKT------ES-ESDLILENCLISMYAKCGVIDNAYNIFSNMVS-------R--- 396 (600)
Q Consensus 334 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-------~--- 396 (600)
++..+...+...|+++.|...+..+.+. +. +....++..+...|...|++++|...+++... +
T Consensus 45 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 124 (283)
T 3edt_B 45 MLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHP 124 (283)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCCh
Confidence 3344444444555555555554443332 11 11244555666666777777777666665531 1
Q ss_pred -ChhhHHHHHHHHHhcCChHHHHHHHHHHHHc------CCCCC-hhHHHHHHHHhcccCchHHHHHHHHHHHhhc-----
Q 007519 397 -DLVSWNSMVMGFSHHGLANETLKVFESMLES------GTHPN-SVTFLGILSACSHAGLVSRGWELFNAMFDVY----- 463 (600)
Q Consensus 397 -~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~------~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----- 463 (600)
...++..+...+...|++++|...+++..+. +-.|. ..++..+..++...|++++|...++++.+..
T Consensus 125 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~ 204 (283)
T 3edt_B 125 DVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEF 204 (283)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Confidence 2356677778888888888888888887764 11232 3566777788888899999999888887531
Q ss_pred -CCCC-CcchHHHHHHHHhhcC------ChHHHHHHHHhCC-CCCC-HHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhC
Q 007519 464 -KIQP-GPEHYVSMINLLGRAG------KIKEAEEFVLRLP-FEPD-HRIWGALLGACGFCEGNAEIAEHAAKRLLELD 532 (600)
Q Consensus 464 -~~~p-~~~~~~~l~~~~~~~g------~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~ 532 (600)
...+ ....+..+...+...+ .+.++...++... ..|+ ..++..+...+. ..|++++|+..++++++..
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~ 282 (283)
T 3edt_B 205 GSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYR-RQGKLEAAHTLEDCASRNR 282 (283)
T ss_dssp SSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTC
T ss_pred CCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhh
Confidence 1223 2334444444444333 3444445555544 2333 345667777787 9999999999999988753
No 96
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.97 E-value=2.9e-08 Score=92.49 Aligned_cols=211 Identities=8% Similarity=-0.051 Sum_probs=108.8
Q ss_pred HHHHHhCCChhHHHHHHHHHHHC----CCCCC-hhHHHHHHHHHhcccchhhhHHHHHHHhhhcCCCchhHHHHHHHHHH
Q 007519 304 ISGLVQNELFVEATYLFMEMRAH----GVPPL-NATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYA 378 (600)
Q Consensus 304 i~~~~~~g~~~~a~~~~~~m~~~----g~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 378 (600)
...|...|++++|+..|++..+. |-+++ ..++..+..++...|++++|...++...+.. .
T Consensus 44 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~---------------~ 108 (292)
T 1qqe_A 44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIF---------------T 108 (292)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---------------H
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH---------------H
Confidence 44566677777777777665442 11111 2234444444444455555444444332211 1
Q ss_pred hcCChHHHHHHHhcCCCCChhhHHHHHHHHHhc-CChHHHHHHHHHHHHcCCCC-C----hhHHHHHHHHhcccCchHHH
Q 007519 379 KCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHH-GLANETLKVFESMLESGTHP-N----SVTFLGILSACSHAGLVSRG 452 (600)
Q Consensus 379 ~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~m~~~~~~p-~----~~~~~~l~~~~~~~g~~~~a 452 (600)
..|+...+ ..+++.+...|... |++++|+..|++..+..... + ..++..+...+...|++++|
T Consensus 109 ~~g~~~~~-----------a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A 177 (292)
T 1qqe_A 109 HRGQFRRG-----------ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEA 177 (292)
T ss_dssp HTTCHHHH-----------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HcCCHHHH-----------HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHH
Confidence 11111111 23455666666664 77777777777665531000 1 23466666777777777777
Q ss_pred HHHHHHHHhhcCCCCCcc-----hHHHHHHHHhhcCChHHHHHHHHhCC-CCCCHH------HHHHHHHHHh-hhhCCHH
Q 007519 453 WELFNAMFDVYKIQPGPE-----HYVSMINLLGRAGKIKEAEEFVLRLP-FEPDHR------IWGALLGACG-FCEGNAE 519 (600)
Q Consensus 453 ~~~~~~~~~~~~~~p~~~-----~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~------~~~~l~~~~~-~~~g~~~ 519 (600)
...|+++.+...-.+... .+..++.++...|++++|...+++.. ..|+.. .+..+..++. ...++++
T Consensus 178 ~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~ 257 (292)
T 1qqe_A 178 SDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLS 257 (292)
T ss_dssp HHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHH
T ss_pred HHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHH
Confidence 777777765411111111 45666777777777777777777753 344321 2223333332 1335677
Q ss_pred HHHHHHHHHHhhCCCCCCcHH
Q 007519 520 IAEHAAKRLLELDPLNAPAHV 540 (600)
Q Consensus 520 ~a~~~~~~~~~~~p~~~~~~~ 540 (600)
+|+..|+++..++|.+...+.
T Consensus 258 ~A~~~~~~~~~l~~~~~~~~~ 278 (292)
T 1qqe_A 258 EHCKEFDNFMRLDKWKITILN 278 (292)
T ss_dssp HHHHHHTTSSCCCHHHHHHHH
T ss_pred HHHHHhccCCccHHHHHHHHH
Confidence 777777777777764433333
No 97
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.97 E-value=9.3e-09 Score=95.48 Aligned_cols=172 Identities=10% Similarity=-0.035 Sum_probs=135.0
Q ss_pred HHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccCchHHHHHHHHHHHhhc
Q 007519 384 DNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVY 463 (600)
Q Consensus 384 ~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 463 (600)
+.....+....+.+...+..+...+...|++++|+..|++..+.. +-+...+..+...+...|++++|...++++...
T Consensus 103 ~~l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~- 180 (287)
T 3qou_A 103 EAIRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ- 180 (287)
T ss_dssp HHHHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG-
T ss_pred HHHHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh-
Confidence 444555555556666777788888999999999999999998852 335567778888999999999999999988754
Q ss_pred CCCCCcchHH-HHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCC--CCc
Q 007519 464 KIQPGPEHYV-SMINLLGRAGKIKEAEEFVLRLP-FEP-DHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLN--APA 538 (600)
Q Consensus 464 ~~~p~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~--~~~ 538 (600)
.|+..... .....+...|+.++|.+.+++.. ..| +...+..+...+. ..|++++|+..++++++.+|++ +..
T Consensus 181 --~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~-~~g~~~~A~~~l~~~l~~~p~~~~~~a 257 (287)
T 3qou_A 181 --DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLH-QVGRNEEALELLFGHLRXDLTAADGQT 257 (287)
T ss_dssp --GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTGGGGHH
T ss_pred --hcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHH-HcccHHHHHHHHHHHHhcccccccchH
Confidence 56533322 33334667788888888887764 445 5667788888888 9999999999999999999987 788
Q ss_pred HHHHhHHHHhhCCcHHHHHHHH
Q 007519 539 HVVLCNIYAASGRHVEEHKLRM 560 (600)
Q Consensus 539 ~~~l~~~~~~~g~~~~A~~~~~ 560 (600)
+..++.++...|+.++|...++
T Consensus 258 ~~~l~~~~~~~g~~~~a~~~~r 279 (287)
T 3qou_A 258 RXTFQEILAALGTGDALASXYR 279 (287)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCCCcHHHHHH
Confidence 9999999999999999998444
No 98
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.97 E-value=9.5e-09 Score=82.99 Aligned_cols=126 Identities=21% Similarity=0.290 Sum_probs=62.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCCCcchHHHHHHHHh
Q 007519 401 WNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLG 480 (600)
Q Consensus 401 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 480 (600)
|..+...+...|++++|..+++++.+.. +.+...+..+...+...|++++|..+++++... .|
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~------------- 66 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL---DP------------- 66 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CT-------------
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH---CC-------------
Confidence 4445555555556666666555555432 223344444445555555555555555555432 12
Q ss_pred hcCChHHHHHHHHhCCCCCCHHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCCCcHHHHhHHHHhhCCcHHHHHHHH
Q 007519 481 RAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRM 560 (600)
Q Consensus 481 ~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 560 (600)
.+...+..+...+. ..|++++|+..++++++..|.++..+..++.++...|++++|...++
T Consensus 67 ------------------~~~~~~~~l~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 127 (136)
T 2fo7_A 67 ------------------RSAEAWYNLGNAYY-KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQ 127 (136)
T ss_dssp ------------------TCHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred ------------------CchHHHHHHHHHHH-HhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHH
Confidence 22333344444444 55555555555555555555444555555555555555555555444
Q ss_pred HH
Q 007519 561 DM 562 (600)
Q Consensus 561 ~~ 562 (600)
.+
T Consensus 128 ~~ 129 (136)
T 2fo7_A 128 KA 129 (136)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 99
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.95 E-value=2.2e-08 Score=80.78 Aligned_cols=122 Identities=18% Similarity=0.300 Sum_probs=94.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhcCC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcc
Q 007519 369 LENCLISMYAKCGVIDNAYNIFSNMV---SRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSH 445 (600)
Q Consensus 369 ~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 445 (600)
.+..+...+...|++++|..+++++. +.+...+..+...+...|++++|..+++++...+ +.+...+..+...+..
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHH
Confidence 46778889999999999999999875 4567788889999999999999999999998764 4455677777788888
Q ss_pred cCchHHHHHHHHHHHhhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHh
Q 007519 446 AGLVSRGWELFNAMFDVYKIQP-GPEHYVSMINLLGRAGKIKEAEEFVLR 494 (600)
Q Consensus 446 ~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 494 (600)
.|++++|.+.++++.+. .| +...+..++..+...|++++|.+.+++
T Consensus 82 ~~~~~~A~~~~~~~~~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 128 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALEL---DPRSAEAWYNLGNAYYKQGDYDEAIEYYQK 128 (136)
T ss_dssp TTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHHccHHHHHHHHHH
Confidence 88899988888888764 33 344555556666666666666555544
No 100
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.94 E-value=4.6e-08 Score=86.15 Aligned_cols=162 Identities=9% Similarity=-0.057 Sum_probs=123.3
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccC----chHHHHHHHHHHHhhcCCCCCcch
Q 007519 396 RDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAG----LVSRGWELFNAMFDVYKIQPGPEH 471 (600)
Q Consensus 396 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g----~~~~a~~~~~~~~~~~~~~p~~~~ 471 (600)
.++..+..+...|...+++++|+..|++..+.| +...+..+...|.. + ++++|.++|++..+. -++..
T Consensus 16 g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~----g~~~a 87 (212)
T 3rjv_A 16 GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEA----GSKSG 87 (212)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHT----TCHHH
T ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHC----CCHHH
Confidence 456666777777777888888888888887754 45556666666766 6 888899988888653 25667
Q ss_pred HHHHHHHHhh----cCChHHHHHHHHhCC-CCCC---HHHHHHHHHHHhhh----hCCHHHHHHHHHHHHhhCCCCCCcH
Q 007519 472 YVSMINLLGR----AGKIKEAEEFVLRLP-FEPD---HRIWGALLGACGFC----EGNAEIAEHAAKRLLELDPLNAPAH 539 (600)
Q Consensus 472 ~~~l~~~~~~----~g~~~~A~~~~~~~~-~~p~---~~~~~~l~~~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~ 539 (600)
+..|...|.. .+++++|.+++++.. ..|. ...+..+...+. . .++.++|+..++++.+. |+++..+
T Consensus 88 ~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~-~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~ 165 (212)
T 3rjv_A 88 EIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYA-SGVHGPEDDVKASEYFKGSSSL-SRTGYAE 165 (212)
T ss_dssp HHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHH-HTSSSSCCHHHHHHHHHHHHHT-SCTTHHH
T ss_pred HHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHHHc-CCCHHHH
Confidence 7788888877 788999999988865 4442 667777777776 6 67899999999999888 5578888
Q ss_pred HHHhHHHHhh-C-----CcHHHHHHHHHHhhcCC
Q 007519 540 VVLCNIYAAS-G-----RHVEEHKLRMDMGLKGV 567 (600)
Q Consensus 540 ~~l~~~~~~~-g-----~~~~A~~~~~~~~~~~~ 567 (600)
..|+.+|... | ++++|..+++...+.|.
T Consensus 166 ~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 166 YWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 8999888754 3 88999998877776654
No 101
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.94 E-value=2.7e-09 Score=88.22 Aligned_cols=121 Identities=13% Similarity=0.029 Sum_probs=100.6
Q ss_pred HHHHhcccCchHHHHHHHHHHHhhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHhhhh
Q 007519 439 ILSACSHAGLVSRGWELFNAMFDVYKIQP-GPEHYVSMINLLGRAGKIKEAEEFVLRLP-FEP-DHRIWGALLGACGFCE 515 (600)
Q Consensus 439 l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~ 515 (600)
|...+...|++++|++.++.... ..| ++..+..++..|.+.|++++|.+.+++.. ..| +...|..+...+. ..
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~---~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~-~~ 78 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTP---SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYE-LE 78 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSC---SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HT
T ss_pred hHHHHHHcChHHHHHHHHHHhcc---cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-Hc
Confidence 44566778999999999998864 456 46677889999999999999999999874 555 5677888888888 99
Q ss_pred CCHHHHHHHHHHHHhhCCCCCCcHHHHhHHHHhhCCcHHHHH-HHHHHh
Q 007519 516 GNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHK-LRMDMG 563 (600)
Q Consensus 516 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~-~~~~~~ 563 (600)
|++++|+..++++++++|+++.++..++.+|.+.|++++|.+ +++...
T Consensus 79 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al 127 (150)
T 4ga2_A 79 ENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAA 127 (150)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998776 455443
No 102
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.90 E-value=1.1e-06 Score=87.95 Aligned_cols=363 Identities=9% Similarity=0.009 Sum_probs=201.1
Q ss_pred CC-ChhHHHHHhhcCCC--CCcccHHHHHHHHHhcCCHhHHHHHHHhccc--CCchhHHHHHHHHHhcCC-hhHHHHHHc
Q 007519 117 NG-ELNEARKVFNSMPI--KNVISWNAMIAGYVECCMMGEAIVLFEEMEE--RNVVTWTSMISGYCRAGE-VEEGYCLFR 190 (600)
Q Consensus 117 ~~-~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~g~-~~~A~~~~~ 190 (600)
.| +++.|..+|+++.. |. |+++.+..+|+.... |+...|...+....+.++ .+....+|+
T Consensus 7 ~~~~i~~aR~vyer~l~~~P~--------------~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe 72 (493)
T 2uy1_A 7 MGVELSSPSAIMEHARRLYMS--------------KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEVYE 72 (493)
T ss_dssp -----CCHHHHHHHHHHHHHT--------------TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHHHH
T ss_pred cCcchHHHHHHHHHHHHHCCC--------------CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHHHH
Confidence 45 36666666666543 33 778888888888774 777777777776666553 233444444
Q ss_pred cCCC------CCcchHHHHHHHHH----hcCChhHHHHHHHHHHhhhcCCCCCC--hhhHHHHHHHHHhcCChhhHHHHh
Q 007519 191 RMPR------KNVVSWTAMIGGFA----WNGFHKESLLLFIEMKGICDNGNNCN--VQSCNSMINGYIRFGRLEEAQNLF 258 (600)
Q Consensus 191 ~~~~------~~~~~~~~li~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~ 258 (600)
.... .+...|...+..+. .+++.+.+..+|+..+.. ++. ...|..... +........+..++
T Consensus 73 ~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~-----P~~~~~~lw~~Y~~-fE~~~~~~~~~~~~ 146 (493)
T 2uy1_A 73 FTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQT-----PMGSLSELWKDFEN-FELELNKITGKKIV 146 (493)
T ss_dssp HHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTS-----CCTTHHHHHHHHHH-HHHHHCHHHHHHHH
T ss_pred HHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhC-----hhhhHHHHHHHHHH-HHHHhccccHHHHH
Confidence 4321 24455666665543 245677777788877742 221 112222211 11111122222222
Q ss_pred cccCCCCchhHHHHHHHHHhcCChHHHHHHHhhCCC----CChhhHHHHHHHHHhCC--C-----hhHHHHHHHHHHHCC
Q 007519 259 DTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPD----RDAVAWTAMISGLVQNE--L-----FVEATYLFMEMRAHG 327 (600)
Q Consensus 259 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g--~-----~~~a~~~~~~m~~~g 327 (600)
.... +.+..|..+++.+.. .+...|...+.--...+ - .+++..+|++++..
T Consensus 147 ~~~~-----------------~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~- 208 (493)
T 2uy1_A 147 GDTL-----------------PIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDS- 208 (493)
T ss_dssp HHHH-----------------HHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-
T ss_pred HHHh-----------------HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHc-
Confidence 1110 111122222221111 12334544444322211 1 24566788887765
Q ss_pred CCCChhHHHHHHHHHhcccchhhhHHHHHHHhhhcCCCchhHHHHHHHHHHhcCChHHH-HHHHhcCC------------
Q 007519 328 VPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNA-YNIFSNMV------------ 394 (600)
Q Consensus 328 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A-~~~~~~~~------------ 394 (600)
.+.+...|...+.-+.+.|+++.|..+++..... +.+...+.. |....+.++. ..+.+...
T Consensus 209 ~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~----y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~ 282 (493)
T 2uy1_A 209 FYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLY----YGLVMDEEAVYGDLKRKYSMGEAESAEKVFS 282 (493)
T ss_dssp TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHH----HHHHTTCTHHHHHHHHHTC----------CH
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHH----HHhhcchhHHHHHHHHHHHhhccchhhhhcc
Confidence 3444566666666677788888888888888777 333333322 2221111111 11111110
Q ss_pred CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcc-cCchHHHHHHHHHHHhhcCCCCCcchHH
Q 007519 395 SRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSH-AGLVSRGWELFNAMFDVYKIQPGPEHYV 473 (600)
Q Consensus 395 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~~~~p~~~~~~ 473 (600)
......|...+....+.++.+.|..+|++. .. ...+...|......-.. .++.+.|..+|+.+.+.++- ++..+.
T Consensus 283 ~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~--~~~~~~ 358 (493)
T 2uy1_A 283 KELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPD--STLLKE 358 (493)
T ss_dssp HHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTT--CHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCC--CHHHHH
Confidence 112245777777777788899999999998 32 12233444322222222 33699999999999986322 345566
Q ss_pred HHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHhhhhCCHHHHHHHHHHHHh
Q 007519 474 SMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLE 530 (600)
Q Consensus 474 ~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~ 530 (600)
..++...+.|+.+.|..+|+++. .....|...+..-. ..|+.+.+..+++++.+
T Consensus 359 ~yid~e~~~~~~~~aR~l~er~~--k~~~lw~~~~~fE~-~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 359 EFFLFLLRIGDEENARALFKRLE--KTSRMWDSMIEYEF-MVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHSC--CBHHHHHHHHHHHH-HHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHH--HHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHH
Confidence 77888889999999999999984 34667777776666 78999999999998876
No 103
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.89 E-value=8.1e-09 Score=84.83 Aligned_cols=102 Identities=12% Similarity=-0.040 Sum_probs=86.1
Q ss_pred CCCC-CcchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCCCcHH
Q 007519 464 KIQP-GPEHYVSMINLLGRAGKIKEAEEFVLRLP-FEP-DHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHV 540 (600)
Q Consensus 464 ~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 540 (600)
.+.| +...+..++..+.+.|++++|.+.|+++. ..| +...|..+..++. ..|++++|+..|+++++++|+++.++.
T Consensus 30 ~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~-~~g~~~~Ai~~~~~al~l~P~~~~~~~ 108 (151)
T 3gyz_A 30 AIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQ-IKEQFQQAADLYAVAFALGKNDYTPVF 108 (151)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHSSSCCHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HHccHHHHHHHHHHHHhhCCCCcHHHH
Confidence 4566 46778888999999999999999998875 455 5667888888888 999999999999999999999999999
Q ss_pred HHhHHHHhhCCcHHHHHHHHHHhhcC
Q 007519 541 VLCNIYAASGRHVEEHKLRMDMGLKG 566 (600)
Q Consensus 541 ~l~~~~~~~g~~~~A~~~~~~~~~~~ 566 (600)
.++.+|...|++++|...++...+..
T Consensus 109 ~lg~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 109 HTGQCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 99999999999999999776665543
No 104
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.88 E-value=1.3e-08 Score=86.83 Aligned_cols=73 Identities=12% Similarity=0.008 Sum_probs=50.1
Q ss_pred HHHHHHhCC-CCC-CHHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCC--CCcHHHHhHHHHhhCCcHHHHHHHHH
Q 007519 488 AEEFVLRLP-FEP-DHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLN--APAHVVLCNIYAASGRHVEEHKLRMD 561 (600)
Q Consensus 488 A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~A~~~~~~ 561 (600)
|.+.+++.. ..| +...+..+...+. ..|++++|+..++++++.+|+. +..+..++.++...|+.++|...++.
T Consensus 93 a~~~~~~al~~~P~~~~~~~~la~~~~-~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~ 169 (176)
T 2r5s_A 93 ELKRLEQELAANPDNFELACELAVQYN-QVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRR 169 (176)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHH-HcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHH
Confidence 444444432 334 3556666666666 7888888888888888888754 44777888888888888888875543
No 105
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.88 E-value=2.9e-08 Score=102.23 Aligned_cols=159 Identities=13% Similarity=0.031 Sum_probs=120.1
Q ss_pred cCChHHHHHHHhcCC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccCchHHHHHHH
Q 007519 380 CGVIDNAYNIFSNMV---SRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELF 456 (600)
Q Consensus 380 ~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 456 (600)
.|++++|...|++.. +.+...|..+...+...|++++|.+.+++..+.. +.+...+..+..++...|++++|.+.+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 367788888888776 4457788888999999999999999999998752 334577888888999999999999999
Q ss_pred HHHHhhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHhhhh---CCHHHHHHHHHHHHh
Q 007519 457 NAMFDVYKIQP-GPEHYVSMINLLGRAGKIKEAEEFVLRLP-FEP-DHRIWGALLGACGFCE---GNAEIAEHAAKRLLE 530 (600)
Q Consensus 457 ~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~---g~~~~a~~~~~~~~~ 530 (600)
+++.+. .| +...+..++.+|.+.|++++|.+.+++.. ..| +...+..+...+. .. |+.++|+..++++++
T Consensus 81 ~~al~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~-~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 81 QQASDA---APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRR-RLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHhc---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HhhccccHHHHHHHHHHHHh
Confidence 999875 55 57788999999999999999999998864 444 4667777777887 88 999999999999999
Q ss_pred hCCCCCCcHHHHh
Q 007519 531 LDPLNAPAHVVLC 543 (600)
Q Consensus 531 ~~p~~~~~~~~l~ 543 (600)
.+|++...+..++
T Consensus 157 ~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 157 QGVGAVEPFAFLS 169 (568)
T ss_dssp HTCCCSCHHHHTT
T ss_pred cCCcccChHHHhC
Confidence 9998888777766
No 106
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.87 E-value=1.2e-07 Score=99.48 Aligned_cols=142 Identities=9% Similarity=0.007 Sum_probs=91.4
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHhcCC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHH
Q 007519 366 DLILENCLISMYAKCGVIDNAYNIFSNMV---SRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSA 442 (600)
Q Consensus 366 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 442 (600)
+...+..+..++...|++++|...|+++. +.+...|..+..++...|++++|+..|++..+.. +.+...+..+..+
T Consensus 432 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~ 510 (681)
T 2pzi_A 432 SVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTF-PGELAPKLALAAT 510 (681)
T ss_dssp CSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHH
T ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 34455566666666777777777776665 4456667777777777777777777777776642 2234556666667
Q ss_pred hcccCchHHHHHHHHHHHhhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHhCC-CCCCH-HHHHHHHHHHh
Q 007519 443 CSHAGLVSRGWELFNAMFDVYKIQP-GPEHYVSMINLLGRAGKIKEAEEFVLRLP-FEPDH-RIWGALLGACG 512 (600)
Q Consensus 443 ~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~-~~~~~l~~~~~ 512 (600)
+...|++++ .+.|+++.+. .| +...+..++.+|.+.|++++|.+.+++.. ..|+. ..+..+..++.
T Consensus 511 ~~~~g~~~~-~~~~~~al~~---~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~ 579 (681)
T 2pzi_A 511 AELAGNTDE-HKFYQTVWST---NDGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLL 579 (681)
T ss_dssp HHHHTCCCT-TCHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC
T ss_pred HHHcCChHH-HHHHHHHHHh---CCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHH
Confidence 777777777 7777777653 45 45667777777777777777777777764 55553 34444544544
No 107
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.87 E-value=1.9e-08 Score=103.64 Aligned_cols=151 Identities=17% Similarity=0.041 Sum_probs=115.2
Q ss_pred cCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCC-CcchHHHHHHHHhhcCChHHHH
Q 007519 411 HGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQP-GPEHYVSMINLLGRAGKIKEAE 489 (600)
Q Consensus 411 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~ 489 (600)
.|++++|++.+++..+.. +.+...+..+...+...|++++|.+.++++.+. .| +...+..++.+|...|++++|.
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~ 77 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL---HPGHPEAVARLGRVRWTQQRHAEAA 77 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT---STTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 478899999999988642 334677888889999999999999999999853 66 5788999999999999999999
Q ss_pred HHHHhCC-CCC-CHHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCCCcHHHHhHHHHhh---CCcHHHHHHHHHHhh
Q 007519 490 EFVLRLP-FEP-DHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAAS---GRHVEEHKLRMDMGL 564 (600)
Q Consensus 490 ~~~~~~~-~~p-~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~ 564 (600)
+.+++.. ..| +...+..+...+. ..|++++|+..++++++++|+++..+..++.++... |++++|.+.++...+
T Consensus 78 ~~~~~al~~~p~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 78 VLLQQASDAAPEHPGIALWLGHALE-DAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 9998864 444 5677888888888 999999999999999999999999999999999999 999999997766655
Q ss_pred cC
Q 007519 565 KG 566 (600)
Q Consensus 565 ~~ 566 (600)
.+
T Consensus 157 ~~ 158 (568)
T 2vsy_A 157 QG 158 (568)
T ss_dssp HT
T ss_pred cC
Confidence 44
No 108
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.83 E-value=2e-08 Score=79.97 Aligned_cols=107 Identities=13% Similarity=0.008 Sum_probs=69.6
Q ss_pred HHHHHHHHhcccCchHHHHHHHHHHHhhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHH
Q 007519 435 TFLGILSACSHAGLVSRGWELFNAMFDVYKIQP-GPEHYVSMINLLGRAGKIKEAEEFVLRLP-FEP-DHRIWGALLGAC 511 (600)
Q Consensus 435 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~ 511 (600)
.+......+.+.|++++|++.|+++.+. .| +...|..++.+|.+.|++++|++.+++.. ..| +...|..+..++
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~ 91 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKR---DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 3444555666667777777777766653 44 45666667777777777777777776653 333 355666666666
Q ss_pred hhhhCCHHHHHHHHHHHHhhCCCCCCcHHHHhHH
Q 007519 512 GFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNI 545 (600)
Q Consensus 512 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 545 (600)
. ..|++++|+..|+++++++|+++.++..|..+
T Consensus 92 ~-~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 92 V-AMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp H-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred H-HCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 6 77777777777777777777776666665543
No 109
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.81 E-value=1.3e-07 Score=88.66 Aligned_cols=220 Identities=11% Similarity=0.006 Sum_probs=154.1
Q ss_pred hCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhcccchhhhHHHHHHHhhhcCCCchhHHHHHHHHHHhcCChHHHHH
Q 007519 309 QNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYN 388 (600)
Q Consensus 309 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 388 (600)
..|++++|.+++++..+.. +.. .+...++++.|...+.. ....|...|++++|..
T Consensus 3 ~~~~~~eA~~~~~~a~k~~-~~~---------~~~~~~~~~~A~~~~~~---------------a~~~~~~~g~~~~A~~ 57 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYL-KTS---------FMKWKPDYDSAASEYAK---------------AAVAFKNAKQLEQAKD 57 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHH-CCC---------SSSCSCCHHHHHHHHHH---------------HHHHHHHTTCHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHc-ccc---------ccCCCCCHHHHHHHHHH---------------HHHHHHHcCCHHHHHH
Confidence 3577888999998877642 111 01114667777666654 3456778899999988
Q ss_pred HHhcCCC-----CC----hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCC---CCC--hhHHHHHHHHhcccCchHHHHH
Q 007519 389 IFSNMVS-----RD----LVSWNSMVMGFSHHGLANETLKVFESMLESGT---HPN--SVTFLGILSACSHAGLVSRGWE 454 (600)
Q Consensus 389 ~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~---~p~--~~~~~~l~~~~~~~g~~~~a~~ 454 (600)
.|.+... .+ ..+|+.+...|...|++++|+..|++..+.-. .|. ..++..+...|.. |++++|..
T Consensus 58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~ 136 (307)
T 2ifu_A 58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVH 136 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHH
Confidence 8877651 11 35788888999999999999999998765411 121 2467777788888 99999999
Q ss_pred HHHHHHhhcCCCC----CcchHHHHHHHHhhcCChHHHHHHHHhCC-C---CCC----HHHHHHHHHHHhhhhCCHHHHH
Q 007519 455 LFNAMFDVYKIQP----GPEHYVSMINLLGRAGKIKEAEEFVLRLP-F---EPD----HRIWGALLGACGFCEGNAEIAE 522 (600)
Q Consensus 455 ~~~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~---~p~----~~~~~~l~~~~~~~~g~~~~a~ 522 (600)
.++++.+...-.. ...++..++.+|.+.|++++|.+.+++.. . .++ ...+..+...+. ..|++++|+
T Consensus 137 ~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~-~~g~~~~A~ 215 (307)
T 2ifu_A 137 LYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQL-HRADYVAAQ 215 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HTTCHHHHH
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHH-HcCCHHHHH
Confidence 9999886421111 14678889999999999999999998863 1 122 124445555566 789999999
Q ss_pred HHHHHHHhhCCCCCCc-----HHHHhHHHHhhCCcHHHHH
Q 007519 523 HAAKRLLELDPLNAPA-----HVVLCNIYAASGRHVEEHK 557 (600)
Q Consensus 523 ~~~~~~~~~~p~~~~~-----~~~l~~~~~~~g~~~~A~~ 557 (600)
..+++++ +.|..... ...++.++ ..|+.+.+.+
T Consensus 216 ~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 216 KCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 9999999 99966543 33455545 5677666655
No 110
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.80 E-value=6.8e-07 Score=89.33 Aligned_cols=341 Identities=10% Similarity=0.011 Sum_probs=151.6
Q ss_pred CChhHHHHHhhhcCC--CChhhHHHHHHHHHhcCC-hHHHHHHhhcCCC------CCceeHHHHHHHHH----HCCChhH
Q 007519 56 GRLSEARRLFEEMPE--RNVVSWTAMICGLADAGR-VCEARKLFEEMPE------RNVVSWNSMVVGLI----RNGELNE 122 (600)
Q Consensus 56 ~~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~------~~~~~~~~l~~~~~----~~~~~~~ 122 (600)
|+++.+..+|++... |++..|...++...+.++ .+....+|+.... .+...|...+..+. ..++.+.
T Consensus 28 ~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~ 107 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEK 107 (493)
T ss_dssp TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHH
T ss_pred CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHH
Confidence 788888888888876 777777777776666653 3445555555432 34456666666543 2356667
Q ss_pred HHHHhhcCCCCCcccHHHHHHHHHh---cCCHhHHHHHHHhcccCCchhHHHHHHHHHhcCChhHHHHHHccCCC----C
Q 007519 123 ARKVFNSMPIKNVISWNAMIAGYVE---CCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPR----K 195 (600)
Q Consensus 123 a~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~ 195 (600)
+.++|++...........+-..|.. ......+.+++.+.. +.+..|..+++.+.. .
T Consensus 108 vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~-----------------~~y~~ar~~y~~~~~~~~~~ 170 (493)
T 2uy1_A 108 IRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTL-----------------PIFQSSFQRYQQIQPLIRGW 170 (493)
T ss_dssp HHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHh-----------------HHHHHHHHHHHHHHHHHhhc
Confidence 7777777765111122222222211 111112222221110 011111111111110 1
Q ss_pred CcchHHHHHHHHHhcC--C-----hhHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHhcCChhhHHHHhcccCCC--Cc
Q 007519 196 NVVSWTAMIGGFAWNG--F-----HKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVR--DE 266 (600)
Q Consensus 196 ~~~~~~~li~~~~~~~--~-----~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~ 266 (600)
+...|...+..-...+ - .+.+..+|++++.. .+.+...|...+..+.+.|+.+.|..++++.... +.
T Consensus 171 s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~----~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~P~~~ 246 (493)
T 2uy1_A 171 SVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDS----FYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEMSDGM 246 (493)
T ss_dssp SHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH----TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSS
T ss_pred cHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHc----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcH
Confidence 1223333332211110 0 22344555555543 2233444555555555555666665555544311 11
Q ss_pred hhHHHHHHHHHhcCChHHH-HHHHhhCC----------C--CChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChh
Q 007519 267 ISWTSMIDGYLSVGQVSNA-YYLFHNMP----------D--RDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNA 333 (600)
Q Consensus 267 ~~~~~l~~~~~~~~~~~~A-~~~~~~~~----------~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 333 (600)
..+. .|....+.++. ..+.+... . .....|...+....+.++.+.|..+|+.. +.. ..+..
T Consensus 247 ~l~~----~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~ 320 (493)
T 2uy1_A 247 FLSL----YYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPH 320 (493)
T ss_dssp HHHH----HHHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHH
T ss_pred HHHH----HHHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChH
Confidence 1111 11111111111 01111100 0 01134555555555556677777777766 211 12222
Q ss_pred HHHHHHHHHhc-ccchhhhHHHHHHHhhhcCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHhcC
Q 007519 334 TFSVLFGAAGA-TANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHG 412 (600)
Q Consensus 334 ~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~ 412 (600)
.|......-.. .++.+.|..+++...+.-. .++..+...++...+.|+.+.|..+|+.+. .....|...+..-...|
T Consensus 321 v~i~~A~lE~~~~~d~~~ar~ife~al~~~~-~~~~~~~~yid~e~~~~~~~~aR~l~er~~-k~~~lw~~~~~fE~~~G 398 (493)
T 2uy1_A 321 VFIYCAFIEYYATGSRATPYNIFSSGLLKHP-DSTLLKEEFFLFLLRIGDEENARALFKRLE-KTSRMWDSMIEYEFMVG 398 (493)
T ss_dssp HHHHHHHHHHHHHCCSHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-CBHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHCC
Confidence 23211111111 2246666676666555421 123344445555566666666666666663 24555666665555566
Q ss_pred ChHHHHHHHHHHH
Q 007519 413 LANETLKVFESML 425 (600)
Q Consensus 413 ~~~~a~~~~~~m~ 425 (600)
+.+.+..++++..
T Consensus 399 ~~~~~r~v~~~~~ 411 (493)
T 2uy1_A 399 SMELFRELVDQKM 411 (493)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 6666666665554
No 111
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.80 E-value=3.7e-08 Score=86.52 Aligned_cols=155 Identities=10% Similarity=0.024 Sum_probs=111.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCh-hHHHH----------------HHHHhcccCchHHHHHHHHHHHhhcCCC
Q 007519 404 MVMGFSHHGLANETLKVFESMLESGTHPNS-VTFLG----------------ILSACSHAGLVSRGWELFNAMFDVYKIQ 466 (600)
Q Consensus 404 l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~----------------l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 466 (600)
....+...|++++|+..|++..+. .|+. ..+.. +..++...|++++|...|+++.+. .
T Consensus 10 ~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~ 84 (208)
T 3urz_A 10 KVSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK---A 84 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---C
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---C
Confidence 344555667777777777766653 3332 33444 778889999999999999999875 6
Q ss_pred C-CcchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHhhhhC--CHHHHHHHHHHHHhhCCCCCCcHHH
Q 007519 467 P-GPEHYVSMINLLGRAGKIKEAEEFVLRLP-FEP-DHRIWGALLGACGFCEG--NAEIAEHAAKRLLELDPLNAPAHVV 541 (600)
Q Consensus 467 p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~g--~~~~a~~~~~~~~~~~p~~~~~~~~ 541 (600)
| +...+..++.+|...|++++|.+.|++.. ..| +...+..+...+. ..| +.+.+...++++....| ....+..
T Consensus 85 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~a~~~ 162 (208)
T 3urz_A 85 PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYY-LTAEQEKKKLETDYKKLSSPTK-MQYARYR 162 (208)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHHHHHHHHHHHHHC---CCCH-HHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHhCCCc-hhHHHHH
Confidence 6 58889999999999999999999999975 555 4667777777765 444 44566777777654444 2345667
Q ss_pred HhHHHHhhCCcHHHHHHHHHHhhc
Q 007519 542 LCNIYAASGRHVEEHKLRMDMGLK 565 (600)
Q Consensus 542 l~~~~~~~g~~~~A~~~~~~~~~~ 565 (600)
++.++...|++++|...++...+.
T Consensus 163 ~g~~~~~~~~~~~A~~~~~~al~l 186 (208)
T 3urz_A 163 DGLSKLFTTRYEKARNSLQKVILR 186 (208)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHTTT
T ss_pred HHHHHHHccCHHHHHHHHHHHHHh
Confidence 788889999999999987665543
No 112
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.79 E-value=1.5e-07 Score=87.74 Aligned_cols=162 Identities=7% Similarity=-0.085 Sum_probs=118.3
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh-----hHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCCC----c
Q 007519 399 VSWNSMVMGFSHHGLANETLKVFESMLESGTHPNS-----VTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPG----P 469 (600)
Q Consensus 399 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~-----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~ 469 (600)
..+...+..+...|++++|.+.+.+..+....... ..+..+...+...|++++|...++++.+...-..+ .
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 34455677788899999999999888775322111 12333455667888999999999988753221112 3
Q ss_pred chHHHHHHHHhhcCChHHHHHHHHhCC----CCCC-----HHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCC--C---
Q 007519 470 EHYVSMINLLGRAGKIKEAEEFVLRLP----FEPD-----HRIWGALLGACGFCEGNAEIAEHAAKRLLELDPL--N--- 535 (600)
Q Consensus 470 ~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~-----~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~--~--- 535 (600)
.+++.++..|...|++++|.+.+++.. ..|+ ..++..+...+. ..|++++|+..+++++++.++ +
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~-~~~~y~~Al~~~~kal~~~~~~~~~~~ 234 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALY-LDSRYEESLYQVNKAIEISCRINSMAL 234 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTTBCSS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHH-HHhhHHHHHHHHHHHHHHHHhcCcHHH
Confidence 478889999999999999999987753 1222 257778888888 999999999999999986542 1
Q ss_pred -CCcHHHHhHHHHhhCCcHHH-HHHHHH
Q 007519 536 -APAHVVLCNIYAASGRHVEE-HKLRMD 561 (600)
Q Consensus 536 -~~~~~~l~~~~~~~g~~~~A-~~~~~~ 561 (600)
..+|..++.+|...|++++| ...++.
T Consensus 235 ~~~~~~~lg~~y~~~g~~~~Ai~~~~~~ 262 (293)
T 2qfc_A 235 IGQLYYQRGECLRKLEYEEAEIEDAYKK 262 (293)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 46788999999999999999 664443
No 113
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.78 E-value=5.4e-08 Score=82.92 Aligned_cols=155 Identities=10% Similarity=0.006 Sum_probs=109.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHhcCC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHH-hcc
Q 007519 370 ENCLISMYAKCGVIDNAYNIFSNMV---SRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSA-CSH 445 (600)
Q Consensus 370 ~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~-~~~ 445 (600)
+..+...+...|++++|...|++.. +.+...+..+..++...|++++|+..|++.... .|+.......... +..
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~ 86 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNSYKSLIAKLELHQ 86 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChHHHHHHHHHHHHh
Confidence 3455667778888888888888877 456677888888888888888888888887653 3433322221111 112
Q ss_pred cCchHHHHHHHHHHHhhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHhCC-CCCC---HHHHHHHHHHHhhhhCCHHH
Q 007519 446 AGLVSRGWELFNAMFDVYKIQP-GPEHYVSMINLLGRAGKIKEAEEFVLRLP-FEPD---HRIWGALLGACGFCEGNAEI 520 (600)
Q Consensus 446 ~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~---~~~~~~l~~~~~~~~g~~~~ 520 (600)
.+....|...++++.+. .| +...+..++.++...|++++|...++++. ..|+ ...+..+...+. ..|+.++
T Consensus 87 ~~~~~~a~~~~~~al~~---~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~-~~g~~~~ 162 (176)
T 2r5s_A 87 QAAESPELKRLEQELAA---NPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILS-ALGQGNA 162 (176)
T ss_dssp HHTSCHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHH-HHCSSCH
T ss_pred hcccchHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHH-HhCCCCc
Confidence 22334467788887754 56 47788888888999999999998888753 4554 446777777777 8889888
Q ss_pred HHHHHHHHHh
Q 007519 521 AEHAAKRLLE 530 (600)
Q Consensus 521 a~~~~~~~~~ 530 (600)
|+..|++++.
T Consensus 163 A~~~y~~al~ 172 (176)
T 2r5s_A 163 IASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9888888764
No 114
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.77 E-value=1.6e-08 Score=83.25 Aligned_cols=92 Identities=15% Similarity=0.079 Sum_probs=49.6
Q ss_pred cchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCCCcHHHHhHHH
Q 007519 469 PEHYVSMINLLGRAGKIKEAEEFVLRLP-FEP-DHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIY 546 (600)
Q Consensus 469 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 546 (600)
...+..++..+.+.|++++|...|++.. ..| +...|..+..++. ..|++++|+..++++++++|+++.++..++.+|
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~ 99 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQ-AMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHH-HHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 4444555555555555555555555542 222 3444444444455 555555555555555555555555555555555
Q ss_pred HhhCCcHHHHHHHHH
Q 007519 547 AASGRHVEEHKLRMD 561 (600)
Q Consensus 547 ~~~g~~~~A~~~~~~ 561 (600)
...|++++|...++.
T Consensus 100 ~~~g~~~~A~~~~~~ 114 (148)
T 2vgx_A 100 LQXGELAEAESGLFL 114 (148)
T ss_dssp HHTTCHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHH
Confidence 555555555554433
No 115
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.77 E-value=3e-08 Score=78.92 Aligned_cols=101 Identities=11% Similarity=-0.019 Sum_probs=88.0
Q ss_pred CCCCC-cchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCCCcHH
Q 007519 464 KIQPG-PEHYVSMINLLGRAGKIKEAEEFVLRLP-FEP-DHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHV 540 (600)
Q Consensus 464 ~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 540 (600)
.+.|+ ...+...+..|.+.|++++|++.|++.. ..| +...|..+..++. ..|++++|+..++++++++|+++.+|.
T Consensus 7 ~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~-~~~~~~~A~~~~~~al~~~p~~~~a~~ 85 (126)
T 4gco_A 7 YINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLT-KLMEFQRALDDCDTCIRLDSKFIKGYI 85 (126)
T ss_dssp CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHH-hhccHHHHHHHHHHHHHhhhhhhHHHH
Confidence 35674 6678889999999999999999999864 445 5677888888888 999999999999999999999999999
Q ss_pred HHhHHHHhhCCcHHHHHHHHHHhhc
Q 007519 541 VLCNIYAASGRHVEEHKLRMDMGLK 565 (600)
Q Consensus 541 ~l~~~~~~~g~~~~A~~~~~~~~~~ 565 (600)
.++.++...|++++|.+.++...+.
T Consensus 86 ~lg~~~~~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 86 RKAACLVAMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 9999999999999999977665543
No 116
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.76 E-value=2.3e-07 Score=82.55 Aligned_cols=185 Identities=13% Similarity=-0.058 Sum_probs=130.0
Q ss_pred hhHHHHHHHHHhcccchhhhHHHHHHHhhhcCCCc--hhHHHHHHHHHHhcCChHHHHHHHhcCC--CC-Chh---hHHH
Q 007519 332 NATFSVLFGAAGATANIDLGRQIHCVLMKTESESD--LILENCLISMYAKCGVIDNAYNIFSNMV--SR-DLV---SWNS 403 (600)
Q Consensus 332 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~-~~~---~~~~ 403 (600)
...+..+...+...|+++.|...++.+.+...... ...+..+..+|.+.|++++|...|+++. .| +.. .+..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 34555666778899999999999999888654322 3567788899999999999999999986 23 222 4455
Q ss_pred HHHHHHh------------------cCChHHHHHHHHHHHHcCCCCChh-HHHHHHHHhcccCchHHHHHHHHHHHhhcC
Q 007519 404 MVMGFSH------------------HGLANETLKVFESMLESGTHPNSV-TFLGILSACSHAGLVSRGWELFNAMFDVYK 464 (600)
Q Consensus 404 l~~~~~~------------------~~~~~~a~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 464 (600)
+..++.. .|+.++|+..|+++.+. .|+.. ....... ...+.....
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~----------l~~~~~~~~---- 147 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKR----------LVFLKDRLA---- 147 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHH----------HHHHHHHHH----
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHH----------HHHHHHHHH----
Confidence 5555543 57899999999999874 45543 2221111 001111111
Q ss_pred CCCCcchHHHHHHHHhhcCChHHHHHHHHhCC-CCCCH----HHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCCCc
Q 007519 465 IQPGPEHYVSMINLLGRAGKIKEAEEFVLRLP-FEPDH----RIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPA 538 (600)
Q Consensus 465 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~----~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 538 (600)
.....++..|.+.|++++|...++++. ..|+. ..+..+..++. ..|+.++|+..++++....|++...
T Consensus 148 -----~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~-~~g~~~~A~~~~~~l~~~~~~~~~~ 220 (225)
T 2yhc_A 148 -----KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYR-QMQMNAQAEKVAKIIAANSSNTLEH 220 (225)
T ss_dssp -----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHCCSCCCCC
T ss_pred -----HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHH-HcCCcHHHHHHHHHHHhhCCCchhh
Confidence 122456788999999999999998864 33432 45667777788 9999999999999999988866543
No 117
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.74 E-value=5.6e-07 Score=83.82 Aligned_cols=160 Identities=8% Similarity=-0.065 Sum_probs=118.1
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCC-CCChh----HHHHHHHHhcccCchHHHHHHHHHHHhhcCCCCC----cchHH
Q 007519 403 SMVMGFSHHGLANETLKVFESMLESGT-HPNSV----TFLGILSACSHAGLVSRGWELFNAMFDVYKIQPG----PEHYV 473 (600)
Q Consensus 403 ~l~~~~~~~~~~~~a~~~~~~m~~~~~-~p~~~----~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~ 473 (600)
..+..+...|++++|..++++..+... .|+.. .+..+...+...|++++|...++++.+...-.++ ..+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 346678889999999999999886421 12211 2234556677788999999999999874222223 23688
Q ss_pred HHHHHHhhcCChHHHHHHHHhCC-----C---CCC-HHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCC------CCc
Q 007519 474 SMINLLGRAGKIKEAEEFVLRLP-----F---EPD-HRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLN------APA 538 (600)
Q Consensus 474 ~l~~~~~~~g~~~~A~~~~~~~~-----~---~p~-~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~ 538 (600)
.++.+|...|++++|.+.++++. . .+. ..++..+...+. ..|++++|+..+++++++.+.. +.+
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~-~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~ 238 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALY-LDSRYEESLYQVNKAIEISCRINSMALIGQL 238 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTTBCTTHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHcCcHHHHHHH
Confidence 99999999999999999887763 1 111 236777888888 9999999999999999865432 467
Q ss_pred HHHHhHHHHhhCC-cHHHHHHHHHHh
Q 007519 539 HVVLCNIYAASGR-HVEEHKLRMDMG 563 (600)
Q Consensus 539 ~~~l~~~~~~~g~-~~~A~~~~~~~~ 563 (600)
|..++.+|.+.|+ +++|.+.++...
T Consensus 239 ~~~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 239 YYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 8899999999995 599998555443
No 118
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.74 E-value=4.9e-08 Score=90.22 Aligned_cols=191 Identities=9% Similarity=-0.042 Sum_probs=128.2
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhcCC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHh
Q 007519 367 LILENCLISMYAKCGVIDNAYNIFSNMV---SRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSAC 443 (600)
Q Consensus 367 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 443 (600)
...+..+...+...|++++|...|++.. +.+...|..+..++...|++++|+..+++..+.. +.+...+..+..++
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 82 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQ 82 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 3455667777788888888888888765 4467788888888888999999999988887642 33456777778888
Q ss_pred cccCchHHHHHHHHHHHhhcCCCCC-cchHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHhhhhCCHHHHH
Q 007519 444 SHAGLVSRGWELFNAMFDVYKIQPG-PEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAE 522 (600)
Q Consensus 444 ~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~g~~~~a~ 522 (600)
...|++++|...|+++.+. .|+ ...+...+....+.++...... .......++......+ ..+ ..|+.++|+
T Consensus 83 ~~~g~~~~A~~~~~~al~l---~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~l-~~l--~~~~~~~A~ 155 (281)
T 2c2l_A 83 LEMESYDEAIANLQRAYSL---AKEQRLNFGDDIPSALRIAKKKRWNS-IEERRIHQESELHSYL-TRL--IAAEREREL 155 (281)
T ss_dssp HHTTCHHHHHHHHHHHHHH---HHHTTCCCCSHHHHHHHHHHHHHHHH-HHHTCCCCCCHHHHHH-HHH--HHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh---CccchhhHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHHHHH-HHH--HHHHHHHHH
Confidence 8899999999999888764 342 2222223333222222212112 2222223333333333 333 368999999
Q ss_pred HHHHHHHhhCCCCCCcHHHHhHHHHhh-CCcHHHHHHHHHHhhc
Q 007519 523 HAAKRLLELDPLNAPAHVVLCNIYAAS-GRHVEEHKLRMDMGLK 565 (600)
Q Consensus 523 ~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~ 565 (600)
+.++++++++|++......+...+.+. +.+++|.+++....+.
T Consensus 156 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 156 EECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp TTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 999999999998777777777777666 7788899988777653
No 119
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.73 E-value=3.8e-07 Score=84.52 Aligned_cols=152 Identities=6% Similarity=-0.004 Sum_probs=68.0
Q ss_pred HHHhcccchhhhHHHHHHHhhhcCCCchhHHHHHHHHHHhcCChHHHHHHHhcCC--CCChhhHHH-HHHHHHhcCChHH
Q 007519 340 GAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMV--SRDLVSWNS-MVMGFSHHGLANE 416 (600)
Q Consensus 340 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~-l~~~~~~~~~~~~ 416 (600)
..+...|+++.|...++.+.+.... +...+..+...+...|++++|...++++. .|+...... ....+...++.++
T Consensus 125 ~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~~~~~ 203 (287)
T 3qou_A 125 MQLMQESNYTDALPLLXDAWQLSNQ-NGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQAADTP 203 (287)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHTTS-CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHHTSCH
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhcccCc
Confidence 3334444444444444443333222 23344455555555555555555555554 222221111 1122344444555
Q ss_pred HHHHHHHHHHcCCCCChhHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHH
Q 007519 417 TLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVL 493 (600)
Q Consensus 417 a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 493 (600)
|+..+++..... +.+...+..+...+...|++++|.+.++++.+...-..+...+..++.+|...|+.++|...++
T Consensus 204 a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r 279 (287)
T 3qou_A 204 EIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASXYR 279 (287)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred cHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHHHH
Confidence 555555555431 2233444445555555555555555555555431101113445555555555555555544443
No 120
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.71 E-value=1.7e-07 Score=82.73 Aligned_cols=127 Identities=10% Similarity=-0.046 Sum_probs=104.9
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCC-CcchHHHHHH
Q 007519 399 VSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQP-GPEHYVSMIN 477 (600)
Q Consensus 399 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~ 477 (600)
..+..+...+...|++++|+..|++. +.|+...+..+..++...|++++|...++++.+. .| +...+..++.
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~~~~~~~~~~lg~ 79 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINR---DKHLAVAYFQRGM 79 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHH----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CccchHHHHHHHH
Confidence 34556777888999999999999876 4678888888889999999999999999999875 45 5778889999
Q ss_pred HHhhcCChHHHHHHHHhCC-CCCC-----------------HHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCC
Q 007519 478 LLGRAGKIKEAEEFVLRLP-FEPD-----------------HRIWGALLGACGFCEGNAEIAEHAAKRLLELDP 533 (600)
Q Consensus 478 ~~~~~g~~~~A~~~~~~~~-~~p~-----------------~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p 533 (600)
+|...|++++|.+.+++.. ..|+ ...+..+...+. ..|++++|+..+++++++.|
T Consensus 80 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~p 152 (213)
T 1hh8_A 80 LYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYA-KKEEWKKAEEQLALATSMKS 152 (213)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCC
T ss_pred HHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHH-HccCHHHHHHHHHHHHHcCc
Confidence 9999999999999998863 2222 256777777777 89999999999999999999
No 121
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.69 E-value=6.7e-07 Score=78.62 Aligned_cols=173 Identities=10% Similarity=-0.097 Sum_probs=123.7
Q ss_pred hHHHHHHHhhhcCCCchhHHHHHHHHHHhcCChHHHHHHHhcCC-CCChhhHHHHHHHHHhcC----ChHHHHHHHHHHH
Q 007519 351 GRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMV-SRDLVSWNSMVMGFSHHG----LANETLKVFESML 425 (600)
Q Consensus 351 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~~~~~~~l~~~~~~~~----~~~~a~~~~~~m~ 425 (600)
|...+....+.| ++..+..+...|...+++++|...|++.. ..++..+..+...|.. + ++++|+.+|++..
T Consensus 5 A~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 5 PGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKAV 80 (212)
T ss_dssp TTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence 444444444433 45555666777777778888888777765 4456677777777776 5 7889999999887
Q ss_pred HcCCCCChhHHHHHHHHhcc----cCchHHHHHHHHHHHhhcCCCCC---cchHHHHHHHHhh----cCChHHHHHHHHh
Q 007519 426 ESGTHPNSVTFLGILSACSH----AGLVSRGWELFNAMFDVYKIQPG---PEHYVSMINLLGR----AGKIKEAEEFVLR 494 (600)
Q Consensus 426 ~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~----~g~~~~A~~~~~~ 494 (600)
+.| +...+..+...|.. .+++++|.++|++..+. .|+ +..+..|..+|.. .+++++|.+++++
T Consensus 81 ~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~---~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 154 (212)
T 3rjv_A 81 EAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARD---SESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKG 154 (212)
T ss_dssp HTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSS---TTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHH
T ss_pred HCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHc---CCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 754 45566666666766 78899999999988753 342 6788889999888 7889999999988
Q ss_pred CC-CCCCHHHHHHHHHHHhhhhC-----CHHHHHHHHHHHHhhCC
Q 007519 495 LP-FEPDHRIWGALLGACGFCEG-----NAEIAEHAAKRLLELDP 533 (600)
Q Consensus 495 ~~-~~p~~~~~~~l~~~~~~~~g-----~~~~a~~~~~~~~~~~p 533 (600)
.. ..++...+..+...+....| +.++|+..++++.+...
T Consensus 155 A~~~~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 155 SSSLSRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHTSCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHcCCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 74 33455566666666652223 89999999999888754
No 122
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.69 E-value=8.8e-06 Score=75.02 Aligned_cols=221 Identities=10% Similarity=0.044 Sum_probs=135.0
Q ss_pred hHHHHHHHHHHHCCCCCChhH-HHHHHHHHhccc--chhhhHHHHHHHhhhcCCCchhHHHHHHHHH----Hhc---CCh
Q 007519 314 VEATYLFMEMRAHGVPPLNAT-FSVLFGAAGATA--NIDLGRQIHCVLMKTESESDLILENCLISMY----AKC---GVI 383 (600)
Q Consensus 314 ~~a~~~~~~m~~~g~~p~~~~-~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~---~~~ 383 (600)
++|+.+++.++.. .|+..| ++.--.++...+ +++++...+..+.....+ +..+++.-...+ ... +++
T Consensus 50 ~~aL~~t~~~L~~--nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~~~~~~ 126 (306)
T 3dra_A 50 ERALHITELGINE--LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNNNDFDP 126 (306)
T ss_dssp HHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTTTCCCT
T ss_pred HHHHHHHHHHHHH--CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhccccCCH
Confidence 4677777776664 444433 333333444444 566666666655554433 222333222222 233 677
Q ss_pred HHHHHHHhcCC---CCChhhHHHHHHHHHhcCChH--HHHHHHHHHHHcCCCCChhHHHHHHHHhcccCc------hHHH
Q 007519 384 DNAYNIFSNMV---SRDLVSWNSMVMGFSHHGLAN--ETLKVFESMLESGTHPNSVTFLGILSACSHAGL------VSRG 452 (600)
Q Consensus 384 ~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~--~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~------~~~a 452 (600)
++++.+++.+. +.+..+|+.-...+...|.++ ++++.++++.+.. +-|...|+.-...+...|. ++++
T Consensus 127 ~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~~eE 205 (306)
T 3dra_A 127 YREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTIDEE 205 (306)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhhHHHH
Confidence 77877777776 556677777777777777777 8888888888753 3344555544444444454 7777
Q ss_pred HHHHHHHHhhcCCCC-CcchHHHHHHHHhhcCChHH-HHHHHHhCC-C----CCCHHHHHHHHHHHhhhhCCHHHHHHHH
Q 007519 453 WELFNAMFDVYKIQP-GPEHYVSMINLLGRAGKIKE-AEEFVLRLP-F----EPDHRIWGALLGACGFCEGNAEIAEHAA 525 (600)
Q Consensus 453 ~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~-~----~p~~~~~~~l~~~~~~~~g~~~~a~~~~ 525 (600)
++.+..++.. .| |...|+.+..++.+.|+..+ +..+.+++. . ..+...+..+...+. ..|+.++|++++
T Consensus 206 l~~~~~aI~~---~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~-~~~~~~~A~~~~ 281 (306)
T 3dra_A 206 LNYVKDKIVK---CPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYT-QQKKYNESRTVY 281 (306)
T ss_dssp HHHHHHHHHH---CSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHH-HTTCHHHHHHHH
T ss_pred HHHHHHHHHh---CCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHH-ccCCHHHHHHHH
Confidence 7777777754 55 57777777777777776444 445666543 1 235566667777777 778888888888
Q ss_pred HHHHh-hCCCCCCcHHHH
Q 007519 526 KRLLE-LDPLNAPAHVVL 542 (600)
Q Consensus 526 ~~~~~-~~p~~~~~~~~l 542 (600)
+.+.+ .+|.....+...
T Consensus 282 ~~l~~~~Dpir~~yW~~~ 299 (306)
T 3dra_A 282 DLLKSKYNPIRSNFWDYQ 299 (306)
T ss_dssp HHHHHTTCGGGHHHHHHH
T ss_pred HHHHhccChHHHHHHHHH
Confidence 88776 677554444433
No 123
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.68 E-value=1.7e-07 Score=75.31 Aligned_cols=115 Identities=12% Similarity=0.037 Sum_probs=84.9
Q ss_pred hhHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHH
Q 007519 433 SVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQP-GPEHYVSMINLLGRAGKIKEAEEFVLRLP-FEP-DHRIWGALLG 509 (600)
Q Consensus 433 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~ 509 (600)
...+..+...+...|++++|...++++.+. .| +...+..++..|...|++++|.+.+++.. ..| +...+..+..
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~ 92 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKR---NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAA 92 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTT---CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 345556666667777777777777776642 34 46667777777777788888877777653 233 4567777777
Q ss_pred HHhhhhCCHHHHHHHHHHHHhhCCCCCCcHHHHhHHHHhhCC
Q 007519 510 ACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGR 551 (600)
Q Consensus 510 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 551 (600)
.+. ..|++++|+..++++++..|.++..+..++.++...|+
T Consensus 93 ~~~-~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 93 ALE-AMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHH-HTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHH-HHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 777 88999999999999999999888888888888887764
No 124
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.67 E-value=2.1e-07 Score=78.13 Aligned_cols=124 Identities=8% Similarity=-0.048 Sum_probs=91.4
Q ss_pred HHHHHHHhcccCchHHHHHHHHHHHhhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHh
Q 007519 436 FLGILSACSHAGLVSRGWELFNAMFDVYKIQP-GPEHYVSMINLLGRAGKIKEAEEFVLRLP-FEP-DHRIWGALLGACG 512 (600)
Q Consensus 436 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~ 512 (600)
+..+...+...|++++|...++++.+. .| +...+..++.++...|++++|.+.+++.. ..| +...+..+...+.
T Consensus 16 ~~~~a~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 16 LKTQANDYFKAKDYENAIKFYSQAIEL---NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 444555666777777777777777654 34 46677777888888888888888877753 333 4566777777777
Q ss_pred hhhCCHHHHHHHHHHHHhhCCCCCCcHHHHhHH--HHhhCCcHHHHHHHHHHh
Q 007519 513 FCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNI--YAASGRHVEEHKLRMDMG 563 (600)
Q Consensus 513 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~ 563 (600)
..|++++|+..++++++..|+++..+..+..+ +...|++++|.+.+....
T Consensus 93 -~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 93 -ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp -HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 88999999999999999999887777544444 778899999998776554
No 125
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.67 E-value=2.1e-06 Score=79.16 Aligned_cols=210 Identities=13% Similarity=0.112 Sum_probs=162.9
Q ss_pred hhhHHHHHHHhhhcCCCchhHHHHHHHHHHhcC--ChHHHHHHHhcCC---CCChhhHHHHHHHH----Hhc---CChHH
Q 007519 349 DLGRQIHCVLMKTESESDLILENCLISMYAKCG--VIDNAYNIFSNMV---SRDLVSWNSMVMGF----SHH---GLANE 416 (600)
Q Consensus 349 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~~~---~~~~~~~~~l~~~~----~~~---~~~~~ 416 (600)
+.|......+...... ...+++.--.++...| ++++++..++.+. +.+..+|+.-...+ ... +++++
T Consensus 50 ~~aL~~t~~~L~~nP~-~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~ 128 (306)
T 3dra_A 50 ERALHITELGINELAS-HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYR 128 (306)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHH
T ss_pred HHHHHHHHHHHHHCcH-HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHH
Confidence 4677777777765543 3445666666777777 9999999999887 55667787766555 555 78999
Q ss_pred HHHHHHHHHHcCCCCChhHHHHHHHHhcccCchH--HHHHHHHHHHhhcCCCC-CcchHHHHHHHHhhcCC------hHH
Q 007519 417 TLKVFESMLESGTHPNSVTFLGILSACSHAGLVS--RGWELFNAMFDVYKIQP-GPEHYVSMINLLGRAGK------IKE 487 (600)
Q Consensus 417 a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~--~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~------~~~ 487 (600)
++.+++++.+.. +-+...|..-...+.+.|.++ +++++++++.+. .| +-..|+.-..++.+.|+ +++
T Consensus 129 EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~---d~~N~sAW~~R~~ll~~l~~~~~~~~~~e 204 (306)
T 3dra_A 129 EFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT---DLKNNSAWSHRFFLLFSKKHLATDNTIDE 204 (306)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHSSGGGCCHHHHHH
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhccccchhhhHHH
Confidence 999999999863 556677777666677778887 999999999975 55 67788877777777776 899
Q ss_pred HHHHHHhCC-CCC-CHHHHHHHHHHHhhhhCC-HHHHHHHHHHHHhhC---CCCCCcHHHHhHHHHhhCCcHHHHHHHHH
Q 007519 488 AEEFVLRLP-FEP-DHRIWGALLGACGFCEGN-AEIAEHAAKRLLELD---PLNAPAHVVLCNIYAASGRHVEEHKLRMD 561 (600)
Q Consensus 488 A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~g~-~~~a~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 561 (600)
+++.++++. ..| |...|+.....+. +.|+ .+....+.+++.+++ |.++.++..++.+|.+.|+.++|.++++.
T Consensus 205 El~~~~~aI~~~p~n~SaW~y~~~ll~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~ 283 (306)
T 3dra_A 205 ELNYVKDKIVKCPQNPSTWNYLLGIHE-RFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDL 283 (306)
T ss_dssp HHHHHHHHHHHCSSCHHHHHHHHHHHH-HTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCccHHHHHHHHHH-hcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Confidence 999988864 444 6778888888877 7776 444667888888776 77889999999999999999999999988
Q ss_pred Hhh
Q 007519 562 MGL 564 (600)
Q Consensus 562 ~~~ 564 (600)
+.+
T Consensus 284 l~~ 286 (306)
T 3dra_A 284 LKS 286 (306)
T ss_dssp HHH
T ss_pred HHh
Confidence 865
No 126
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.66 E-value=3.7e-07 Score=80.43 Aligned_cols=132 Identities=10% Similarity=-0.031 Sum_probs=110.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccCc
Q 007519 369 LENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGL 448 (600)
Q Consensus 369 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~ 448 (600)
.+..+...+...|++++|...|++...++...|..+...+...|++++|+..|++..... +.+...+..+..++...|+
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~ 86 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEK 86 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHccc
Confidence 345677788899999999999999998899999999999999999999999999998863 4456778888899999999
Q ss_pred hHHHHHHHHHHHhhcCC-------------CC-CcchHHHHHHHHhhcCChHHHHHHHHhCC-CCCCH
Q 007519 449 VSRGWELFNAMFDVYKI-------------QP-GPEHYVSMINLLGRAGKIKEAEEFVLRLP-FEPDH 501 (600)
Q Consensus 449 ~~~a~~~~~~~~~~~~~-------------~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~ 501 (600)
+++|.+.|+++.+...- .| ....+..++.+|...|++++|.+.+++.. ..|+.
T Consensus 87 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 87 YDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp HHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred HHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence 99999999999874211 11 12678899999999999999999998864 55653
No 127
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.65 E-value=2.3e-07 Score=74.14 Aligned_cols=116 Identities=14% Similarity=0.058 Sum_probs=88.9
Q ss_pred hHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHH
Q 007519 434 VTFLGILSACSHAGLVSRGWELFNAMFDVYKIQP-GPEHYVSMINLLGRAGKIKEAEEFVLRLP-FEP-DHRIWGALLGA 510 (600)
Q Consensus 434 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~ 510 (600)
..+..+...+...|++++|...++++... .| +...+..++..+...|++++|.+.+++.. ..| +...+..+...
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIEL---NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHH
Confidence 44555566667777777777777777654 34 46677777888888888888888877753 333 45677777777
Q ss_pred HhhhhCCHHHHHHHHHHHHhhCCCCCCcHHHHhHHHHhhCCcH
Q 007519 511 CGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHV 553 (600)
Q Consensus 511 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 553 (600)
+. ..|++++|+..++++++..|+++..+..++.++...|+++
T Consensus 90 ~~-~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 131 (131)
T 2vyi_A 90 LS-SLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREAP 131 (131)
T ss_dssp HH-HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTCC
T ss_pred HH-HhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcCC
Confidence 77 8999999999999999999988889999999998888763
No 128
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.64 E-value=3.1e-06 Score=78.70 Aligned_cols=158 Identities=11% Similarity=-0.008 Sum_probs=119.1
Q ss_pred HHHHHHhcCChHHHHHHHhcCCC-----CC----hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh-----hHHHH
Q 007519 373 LISMYAKCGVIDNAYNIFSNMVS-----RD----LVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNS-----VTFLG 438 (600)
Q Consensus 373 l~~~~~~~~~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~-----~~~~~ 438 (600)
.+..+...|++++|...+++... ++ ...+..+...+...|++++|+..|++..+.....+. .+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 46678889999999999988652 11 113334666677788999999999999884323222 26888
Q ss_pred HHHHhcccCchHHHHHHHHHHHhhcC----CCC-CcchHHHHHHHHhhcCChHHHHHHHHhCC-------CCCC-HHHHH
Q 007519 439 ILSACSHAGLVSRGWELFNAMFDVYK----IQP-GPEHYVSMINLLGRAGKIKEAEEFVLRLP-------FEPD-HRIWG 505 (600)
Q Consensus 439 l~~~~~~~g~~~~a~~~~~~~~~~~~----~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~p~-~~~~~ 505 (600)
+..+|...|++++|...++++.+... ..+ ...++..++..|.+.|++++|.+.+++.. ..+. ...+.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 88999999999999999999885321 112 24578899999999999999999987753 2222 55677
Q ss_pred HHHHHHhhhhC-CHHHHHHHHHHHHhh
Q 007519 506 ALLGACGFCEG-NAEIAEHAAKRLLEL 531 (600)
Q Consensus 506 ~l~~~~~~~~g-~~~~a~~~~~~~~~~ 531 (600)
.+..++. ..| ++++|+..+++++++
T Consensus 241 ~lg~~~~-~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 241 QRGECLR-KLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHH-HTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHH-HhCCcHHHHHHHHHHHHHH
Confidence 7777887 889 579999999999873
No 129
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.63 E-value=1.6e-07 Score=76.68 Aligned_cols=91 Identities=15% Similarity=-0.018 Sum_probs=46.2
Q ss_pred chHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCCCcHHHHhHHHH
Q 007519 470 EHYVSMINLLGRAGKIKEAEEFVLRLP-FEP-DHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYA 547 (600)
Q Consensus 470 ~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 547 (600)
..+..++..+.+.|++++|.+.|++.. ..| +...|..+..++. ..|++++|+..++++++++|+++..+..++.++.
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQ-SLGLYEQALQSYSYGALMDINEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHH-HHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 334444555555555555555555442 222 3334444444444 5555555555555555555555555555555555
Q ss_pred hhCCcHHHHHHHHH
Q 007519 548 ASGRHVEEHKLRMD 561 (600)
Q Consensus 548 ~~g~~~~A~~~~~~ 561 (600)
..|++++|.+.++.
T Consensus 98 ~~g~~~~A~~~~~~ 111 (142)
T 2xcb_A 98 QLGDLDGAESGFYS 111 (142)
T ss_dssp HTTCHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHH
Confidence 55555555554443
No 130
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.62 E-value=3.8e-07 Score=72.13 Aligned_cols=113 Identities=23% Similarity=0.270 Sum_probs=82.3
Q ss_pred hHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHH
Q 007519 434 VTFLGILSACSHAGLVSRGWELFNAMFDVYKIQP-GPEHYVSMINLLGRAGKIKEAEEFVLRLP--FEPDHRIWGALLGA 510 (600)
Q Consensus 434 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~ 510 (600)
..+..+...+...|++++|.+.++++.+. .| +...+..++..+.+.|++++|...++++. .+.+...+..+...
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 86 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALEL---DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH---CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHH
Confidence 44555666666777777777777777654 23 45567777777777888888877777653 23355667777777
Q ss_pred HhhhhCCHHHHHHHHHHHHhhCCCCCCcHHHHhHHHHhhC
Q 007519 511 CGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASG 550 (600)
Q Consensus 511 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 550 (600)
+. ..|++++|+..++++++..|+++..+..++.++...|
T Consensus 87 ~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 87 YY-KQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HH-HhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 77 8899999999999999999988888888888776654
No 131
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.62 E-value=2.1e-07 Score=88.47 Aligned_cols=93 Identities=16% Similarity=0.093 Sum_probs=79.6
Q ss_pred cchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCCCcHHHHhHHH
Q 007519 469 PEHYVSMINLLGRAGKIKEAEEFVLRLP-FEP-DHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIY 546 (600)
Q Consensus 469 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 546 (600)
...|..++.+|.+.|++++|.+.+++.. ..| +...+..+..++. ..|++++|+..++++++++|+++.++..++.++
T Consensus 196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~-~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~ 274 (336)
T 1p5q_A 196 LASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHL-AVNDFELARADFQKVLQLYPNNKAAKTQLAVCQ 274 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 3578888999999999999999998864 344 5677888888888 999999999999999999999999999999999
Q ss_pred HhhCCcHHHHH-HHHHH
Q 007519 547 AASGRHVEEHK-LRMDM 562 (600)
Q Consensus 547 ~~~g~~~~A~~-~~~~~ 562 (600)
...|++++|.+ +++.|
T Consensus 275 ~~~~~~~~a~~~~~~~~ 291 (336)
T 1p5q_A 275 QRIRRQLAREKKLYANM 291 (336)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999955 55544
No 132
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.62 E-value=1.2e-07 Score=77.83 Aligned_cols=96 Identities=5% Similarity=-0.095 Sum_probs=61.1
Q ss_pred HHHHHHHHhcccCchHHHHHHHHHHHhhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHH
Q 007519 435 TFLGILSACSHAGLVSRGWELFNAMFDVYKIQP-GPEHYVSMINLLGRAGKIKEAEEFVLRLP-FEP-DHRIWGALLGAC 511 (600)
Q Consensus 435 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~ 511 (600)
.+..+...+.+.|++++|...|+++... .| ++..|..++.+|...|++++|.+.|++.. ..| ++..|..+..++
T Consensus 38 ~~~~lg~~~~~~g~~~eA~~~~~~al~~---~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~ 114 (151)
T 3gyz_A 38 DIYSYAYDFYNKGRIEEAEVFFRFLCIY---DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQ 114 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHH
Confidence 3444555566666666666666666643 45 45666666777777777777777666653 333 344556666666
Q ss_pred hhhhCCHHHHHHHHHHHHhhCCC
Q 007519 512 GFCEGNAEIAEHAAKRLLELDPL 534 (600)
Q Consensus 512 ~~~~g~~~~a~~~~~~~~~~~p~ 534 (600)
. ..|++++|+..|++++++.|+
T Consensus 115 ~-~lg~~~eA~~~~~~al~l~~~ 136 (151)
T 3gyz_A 115 L-RLKAPLKAKECFELVIQHSND 136 (151)
T ss_dssp H-HTTCHHHHHHHHHHHHHHCCC
T ss_pred H-HcCCHHHHHHHHHHHHHhCCC
Confidence 6 777777777777777777774
No 133
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.61 E-value=3.6e-07 Score=70.69 Aligned_cols=99 Identities=16% Similarity=0.081 Sum_probs=81.5
Q ss_pred CcchHHHHHHHHhhcCChHHHHHHHHhCC-C-CCCHHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCC--CCCcHHHHh
Q 007519 468 GPEHYVSMINLLGRAGKIKEAEEFVLRLP-F-EPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPL--NAPAHVVLC 543 (600)
Q Consensus 468 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~p~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~ 543 (600)
+...+..++..+...|++++|...+++.. . +.+...+..+...+. ..|++++|+..++++++..|+ ++..+..++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~ 83 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALY-NLERYEEAVDCYNYVINVIEDEYNKDVWAAKA 83 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHH-HccCHHHHHHHHHHHHHhCcccchHHHHHHHH
Confidence 46678888888889999999998888764 3 335667777777777 889999999999999999998 888899999
Q ss_pred HHHHhh-CCcHHHHHHHHHHhhcCC
Q 007519 544 NIYAAS-GRHVEEHKLRMDMGLKGV 567 (600)
Q Consensus 544 ~~~~~~-g~~~~A~~~~~~~~~~~~ 567 (600)
.++... |++++|.+.++...+...
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~p 108 (112)
T 2kck_A 84 DALRYIEGKEVEAEIAEARAKLEHH 108 (112)
T ss_dssp HHHTTCSSCSHHHHHHHHHHGGGCC
T ss_pred HHHHHHhCCHHHHHHHHHHHhhccc
Confidence 999999 999999998777665543
No 134
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.59 E-value=1.2e-07 Score=80.74 Aligned_cols=125 Identities=10% Similarity=0.112 Sum_probs=86.5
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCC-CcchHHHHHHH-HhhcCCh
Q 007519 408 FSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQP-GPEHYVSMINL-LGRAGKI 485 (600)
Q Consensus 408 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~-~~~~g~~ 485 (600)
+...|++++|+..+++..+.. +.+...+..+..++...|++++|...|+++.+. .| +...+..++.+ +...|++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~la~~l~~~~~~~ 95 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQL---RGENAELYAALATVLYYQASQH 95 (177)
T ss_dssp CC-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HCSCHHHHHHHHHHHHHHTTTC
T ss_pred hhhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHhcCCc
Confidence 445677888888888877652 345566777777888888888888888887764 34 46667777777 6677887
Q ss_pred --HHHHHHHHhCC-CCC-CHHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCCC
Q 007519 486 --KEAEEFVLRLP-FEP-DHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAP 537 (600)
Q Consensus 486 --~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 537 (600)
++|.+.+++.. ..| +...+..+...+. ..|++++|+..++++++..|+++.
T Consensus 96 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~p~~~~ 150 (177)
T 2e2e_A 96 MTAQTRAMIDKALALDSNEITALMLLASDAF-MQANYAQAIELWQKVMDLNSPRIN 150 (177)
T ss_dssp CCHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHTCCTTSC
T ss_pred chHHHHHHHHHHHHhCCCcHHHHHHHHHHHH-HcccHHHHHHHHHHHHhhCCCCcc
Confidence 88888887764 334 3556666666677 788888888888888888886544
No 135
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.58 E-value=8.3e-08 Score=78.86 Aligned_cols=103 Identities=11% Similarity=-0.024 Sum_probs=78.9
Q ss_pred hHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHH
Q 007519 434 VTFLGILSACSHAGLVSRGWELFNAMFDVYKIQP-GPEHYVSMINLLGRAGKIKEAEEFVLRLP-FEP-DHRIWGALLGA 510 (600)
Q Consensus 434 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~ 510 (600)
..+..+...+...|++++|...|+++... .| +...|..++.+|...|++++|.+.+++.. ..| +...+..+..+
T Consensus 22 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~ 98 (148)
T 2vgx_A 22 EQLYSLAFNQYQSGXYEDAHXVFQALCVL---DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAEC 98 (148)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHc---CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHH
Confidence 44555667777888888888888888764 45 57778888888888888888888888764 344 45566777777
Q ss_pred HhhhhCCHHHHHHHHHHHHhhCCCCCCcHH
Q 007519 511 CGFCEGNAEIAEHAAKRLLELDPLNAPAHV 540 (600)
Q Consensus 511 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 540 (600)
+. ..|++++|+..+++++++.|+++....
T Consensus 99 ~~-~~g~~~~A~~~~~~al~~~p~~~~~~~ 127 (148)
T 2vgx_A 99 LL-QXGELAEAESGLFLAQELIANXPEFXE 127 (148)
T ss_dssp HH-HTTCHHHHHHHHHHHHHHHTTCGGGHH
T ss_pred HH-HcCCHHHHHHHHHHHHHHCcCCCcchH
Confidence 77 899999999999999999887665543
No 136
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.57 E-value=2.6e-07 Score=86.74 Aligned_cols=197 Identities=8% Similarity=-0.026 Sum_probs=146.5
Q ss_pred cccchhhhHHHHHHHhhhcCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHH
Q 007519 344 ATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFES 423 (600)
Q Consensus 344 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 423 (600)
..|++++|..+++...+.... + .+...++++.|...|.+ ....|...|++++|...|.+
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~-~---------~~~~~~~~~~A~~~~~~-----------a~~~~~~~g~~~~A~~~~~~ 61 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKT-S---------FMKWKPDYDSAASEYAK-----------AAVAFKNAKQLEQAKDAYLQ 61 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCC-C---------SSSCSCCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHccc-c---------ccCCCCCHHHHHHHHHH-----------HHHHHHHcCCHHHHHHHHHH
Confidence 356788888888877664322 1 01115788888877654 46778899999999999998
Q ss_pred HHHcCCC---C-C-hhHHHHHHHHhcccCchHHHHHHHHHHHhhcCC--CC--CcchHHHHHHHHhhcCChHHHHHHHHh
Q 007519 424 MLESGTH---P-N-SVTFLGILSACSHAGLVSRGWELFNAMFDVYKI--QP--GPEHYVSMINLLGRAGKIKEAEEFVLR 494 (600)
Q Consensus 424 m~~~~~~---p-~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~ 494 (600)
..+.... + . ..+|..+..+|...|++++|...++++.+.+.- .| ...++..++.+|.. |++++|++.+++
T Consensus 62 al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~ 140 (307)
T 2ifu_A 62 EAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQ 140 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHH
Confidence 7764211 1 1 246778888899999999999999988764211 11 14578889999988 999999999988
Q ss_pred CC-CC---CC----HHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCCC------cHHHHhHHHHhhCCcHHHHHHHH
Q 007519 495 LP-FE---PD----HRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAP------AHVVLCNIYAASGRHVEEHKLRM 560 (600)
Q Consensus 495 ~~-~~---p~----~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~------~~~~l~~~~~~~g~~~~A~~~~~ 560 (600)
.. .. .+ ..++..+...+. ..|++++|+..+++++++.|++.. .+..++.++...|++++|...++
T Consensus 141 Al~~~~~~~~~~~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~ 219 (307)
T 2ifu_A 141 AAAVFENEERLRQAAELIGKASRLLV-RQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVR 219 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhCCChhHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 63 11 11 356777788888 999999999999999998775442 56677788888999999999776
Q ss_pred HHh
Q 007519 561 DMG 563 (600)
Q Consensus 561 ~~~ 563 (600)
...
T Consensus 220 ~al 222 (307)
T 2ifu_A 220 ESY 222 (307)
T ss_dssp HHT
T ss_pred HHh
Confidence 655
No 137
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.53 E-value=3.9e-07 Score=72.52 Aligned_cols=88 Identities=13% Similarity=-0.098 Sum_probs=43.1
Q ss_pred HHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCCCcHHHHhHHHHhh
Q 007519 472 YVSMINLLGRAGKIKEAEEFVLRLP-FEP-DHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAAS 549 (600)
Q Consensus 472 ~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 549 (600)
+..++..+.+.|++++|.+.|++.. ..| +...|..+..++. ..|++++|+..++++++++|+++..+..++.++...
T Consensus 7 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 85 (126)
T 3upv_A 7 ARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALA-KLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAV 85 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH-HhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Confidence 3444444455555555555554432 222 3334444444444 555555555555555555555555555555555555
Q ss_pred CCcHHHHHHHH
Q 007519 550 GRHVEEHKLRM 560 (600)
Q Consensus 550 g~~~~A~~~~~ 560 (600)
|++++|...++
T Consensus 86 ~~~~~A~~~~~ 96 (126)
T 3upv_A 86 KEYASALETLD 96 (126)
T ss_dssp TCHHHHHHHHH
T ss_pred hCHHHHHHHHH
Confidence 55555555443
No 138
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.53 E-value=3.6e-07 Score=82.25 Aligned_cols=125 Identities=12% Similarity=-0.060 Sum_probs=55.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCCC--cchHHHHHHHHhh
Q 007519 404 MVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPG--PEHYVSMINLLGR 481 (600)
Q Consensus 404 l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~ 481 (600)
+...+...|++++|.++|+.+... .|+......+...+.+.|++++|+..|+..... . .|. ...+..++.++.+
T Consensus 108 yA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~-~-d~~~~~~a~~~LG~al~~ 183 (282)
T 4f3v_A 108 FAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW-P-DKFLAGAAGVAHGVAAAN 183 (282)
T ss_dssp HHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC-S-CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc-C-CcccHHHHHHHHHHHHHH
Confidence 334445555555555555554432 233322223333444555555555555433221 0 110 1234445555555
Q ss_pred cCChHHHHHHHHhCCCC---CC-H-HHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCC
Q 007519 482 AGKIKEAEEFVLRLPFE---PD-H-RIWGALLGACGFCEGNAEIAEHAAKRLLELDP 533 (600)
Q Consensus 482 ~g~~~~A~~~~~~~~~~---p~-~-~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p 533 (600)
.|++++|++.|++.... |. . ........++. ..|+.++|...|+++.+.+|
T Consensus 184 LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~-~lGr~deA~~~l~~a~a~~P 239 (282)
T 4f3v_A 184 LALFTEAERRLTEANDSPAGEACARAIAWYLAMARR-SQGNESAAVALLEWLQTTHP 239 (282)
T ss_dssp TTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHSC
T ss_pred CCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhcCC
Confidence 55555555555544211 22 1 12333333333 55555555555555555555
No 139
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.51 E-value=8.5e-07 Score=75.46 Aligned_cols=117 Identities=9% Similarity=0.019 Sum_probs=62.5
Q ss_pred cccCchHHHHHHHHHHHhhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHH-HhhhhCCH-
Q 007519 444 SHAGLVSRGWELFNAMFDVYKIQP-GPEHYVSMINLLGRAGKIKEAEEFVLRLP-FEP-DHRIWGALLGA-CGFCEGNA- 518 (600)
Q Consensus 444 ~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~-~~~~~g~~- 518 (600)
...|++++|...+++..+. .| +...+..++..|...|++++|.+.+++.. ..| +...+..+... +. ..|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~-~~~~~~ 96 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRA---NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYY-QASQHM 96 (177)
T ss_dssp C-----CCCCHHHHHHHHH---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHH-HTTTCC
T ss_pred hhccCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-hcCCcc
Confidence 3455566666666655543 23 34555566666666666666666665543 222 33444444444 33 55555
Q ss_pred -HHHHHHHHHHHhhCCCCCCcHHHHhHHHHhhCCcHHHHHHHHHHhh
Q 007519 519 -EIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGL 564 (600)
Q Consensus 519 -~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 564 (600)
++|+..++++++..|+++..+..++.++...|++++|...++...+
T Consensus 97 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 143 (177)
T 2e2e_A 97 TAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMD 143 (177)
T ss_dssp CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 6666666666666665566666666666666666666665544443
No 140
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.50 E-value=3.6e-07 Score=71.96 Aligned_cols=94 Identities=16% Similarity=0.034 Sum_probs=77.3
Q ss_pred chHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCCCcHHHHhHHHH
Q 007519 470 EHYVSMINLLGRAGKIKEAEEFVLRLP-FEP-DHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYA 547 (600)
Q Consensus 470 ~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 547 (600)
..+..++..+.+.|++++|...+++.. ..| +...|..+..++. ..|++++|+..++++++++|+++.++..++.++.
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~-~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQA-ENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT 96 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 345667788889999999999988864 445 5667777777777 8899999999999999999988999999999999
Q ss_pred hhCCcHHHHHHHHHHhh
Q 007519 548 ASGRHVEEHKLRMDMGL 564 (600)
Q Consensus 548 ~~g~~~~A~~~~~~~~~ 564 (600)
..|++++|...++...+
T Consensus 97 ~~g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 97 NEHNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 99999999997766544
No 141
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.47 E-value=1.4e-06 Score=81.04 Aligned_cols=162 Identities=11% Similarity=-0.042 Sum_probs=118.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhcCC---CCCh------hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC---CC--hh
Q 007519 369 LENCLISMYAKCGVIDNAYNIFSNMV---SRDL------VSWNSMVMGFSHHGLANETLKVFESMLESGTH---PN--SV 434 (600)
Q Consensus 369 ~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~---p~--~~ 434 (600)
.+...+..+...|++++|.+.+.+.. +... ..+..+...+...|++++|+..+++..+.... +. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 34456677888999999998887554 1111 22344566677889999999999998764211 11 34
Q ss_pred HHHHHHHHhcccCchHHHHHHHHHHHhhcCCCCC-----cchHHHHHHHHhhcCChHHHHHHHHhCC-------CCC-CH
Q 007519 435 TFLGILSACSHAGLVSRGWELFNAMFDVYKIQPG-----PEHYVSMINLLGRAGKIKEAEEFVLRLP-------FEP-DH 501 (600)
Q Consensus 435 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~p-~~ 501 (600)
+++.+...|...|++++|...++++.+.....|+ ..++..++..|.+.|++++|.+.+++.. ... -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 7788888999999999999999998843222232 2588899999999999999999998753 111 15
Q ss_pred HHHHHHHHHHhhhhCCHHHH-HHHHHHHHhh
Q 007519 502 RIWGALLGACGFCEGNAEIA-EHAAKRLLEL 531 (600)
Q Consensus 502 ~~~~~l~~~~~~~~g~~~~a-~~~~~~~~~~ 531 (600)
.++..+...+. ..|+.++| ...+++++.+
T Consensus 237 ~~~~~lg~~y~-~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 237 QLYYQRGECLR-KLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHH-HTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HcCCcHHHHHHHHHHHHHH
Confidence 56777777888 99999999 7889988763
No 142
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.46 E-value=7e-07 Score=72.77 Aligned_cols=103 Identities=11% Similarity=-0.002 Sum_probs=70.5
Q ss_pred HHHHHHHhcccCchHHHHHHHHHHHhhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHh
Q 007519 436 FLGILSACSHAGLVSRGWELFNAMFDVYKIQP-GPEHYVSMINLLGRAGKIKEAEEFVLRLP-FEP-DHRIWGALLGACG 512 (600)
Q Consensus 436 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~ 512 (600)
+..+...+...|++++|...|+++... .| +...|..++.+|.+.|++++|.+.+++.. ..| +...+..+..++.
T Consensus 21 ~~~~a~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 21 LYALGFNQYQAGKWDDAQKIFQALCML---DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 344455666677777777777777654 44 46667777777777777777777777753 334 3445566666666
Q ss_pred hhhCCHHHHHHHHHHHHhhCCCCCCcHHHH
Q 007519 513 FCEGNAEIAEHAAKRLLELDPLNAPAHVVL 542 (600)
Q Consensus 513 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 542 (600)
..|++++|+..+++++++.|+++......
T Consensus 98 -~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 126 (142)
T 2xcb_A 98 -QLGDLDGAESGFYSARALAAAQPAHEALA 126 (142)
T ss_dssp -HTTCHHHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred -HcCCHHHHHHHHHHHHHhCCCCcchHHHH
Confidence 88888888888888888888666554443
No 143
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.46 E-value=7.8e-07 Score=77.56 Aligned_cols=153 Identities=11% Similarity=0.004 Sum_probs=83.9
Q ss_pred hcCChHHHHH---HHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCC-ChhHHHHHHHHhcccCchH
Q 007519 379 KCGVIDNAYN---IFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLES----GTHP-NSVTFLGILSACSHAGLVS 450 (600)
Q Consensus 379 ~~~~~~~A~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~p-~~~~~~~l~~~~~~~g~~~ 450 (600)
..|++++|.+ .+..........+..+...+...|++++|...+++.... +..| ....+..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 3466666666 443322334456666666677777777777777666542 1111 1234555556666777777
Q ss_pred HHHHHHHHHHhhcCCCC-C----cchHHHHHHHHhhcCChHHHHHHHHhCC----CCCCH----HHHHHHHHHHhhhhCC
Q 007519 451 RGWELFNAMFDVYKIQP-G----PEHYVSMINLLGRAGKIKEAEEFVLRLP----FEPDH----RIWGALLGACGFCEGN 517 (600)
Q Consensus 451 ~a~~~~~~~~~~~~~~p-~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~~----~~~~~l~~~~~~~~g~ 517 (600)
+|.+.+++..+...-.+ + ...+..++..+...|++++|.+.+++.. ..++. .++..+...+. ..|+
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~-~~g~ 162 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQ-QEKN 162 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HTTC
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHH-HCcC
Confidence 77777766654321112 1 3345666667777777777776665542 11111 22344445555 6677
Q ss_pred HHHHHHHHHHHHhhC
Q 007519 518 AEIAEHAAKRLLELD 532 (600)
Q Consensus 518 ~~~a~~~~~~~~~~~ 532 (600)
+++|+..+++++++.
T Consensus 163 ~~~A~~~~~~al~~~ 177 (203)
T 3gw4_A 163 LLEAQQHWLRARDIF 177 (203)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 777777777766643
No 144
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.46 E-value=1.3e-06 Score=73.19 Aligned_cols=107 Identities=14% Similarity=0.076 Sum_probs=84.3
Q ss_pred hHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHH
Q 007519 434 VTFLGILSACSHAGLVSRGWELFNAMFDVYKIQP-GPEHYVSMINLLGRAGKIKEAEEFVLRLP-FEP-DHRIWGALLGA 510 (600)
Q Consensus 434 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~ 510 (600)
..+..+...+...|++++|.+.|+++.+. .| +...+..++.+|.+.|++++|++.+++.. ..| +...|..+..+
T Consensus 12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 12 DKLKSEGNAAMARKEYSKAIDLYTQALSI---APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 45566667777888888888888888764 45 57778888888888899999888888764 444 46677778888
Q ss_pred HhhhhCCHHHHHHHHHHHHhhCCCCCCcHHHHhH
Q 007519 511 CGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCN 544 (600)
Q Consensus 511 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 544 (600)
+. ..|++++|+..++++++++|+++..+...+.
T Consensus 89 ~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l 121 (164)
T 3sz7_A 89 RF-DMADYKGAKEAYEKGIEAEGNGGSDAMKRGL 121 (164)
T ss_dssp HH-HTTCHHHHHHHHHHHHHHHSSSCCHHHHHHH
T ss_pred HH-HccCHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 88 9999999999999999999988886655543
No 145
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.45 E-value=1.9e-07 Score=86.23 Aligned_cols=90 Identities=13% Similarity=-0.040 Sum_probs=46.6
Q ss_pred ccchhHHHHHHHhcCChhhHHHHhccCCC--C-CcchHHHHHHHHHcCCChhHHHHHhhhcCC---CChhhHHHHHHHHH
Q 007519 11 VVHLTSSITKYSKRGFIDEAKALFQLMPQ--R-NVVSYNAMLSGFLQNGRLSEARRLFEEMPE---RNVVSWTAMICGLA 84 (600)
Q Consensus 11 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~ 84 (600)
...+..+...+.+.|++++|+..|+...+ | +...|..+..+|.+.|++++|...++++.+ .+...+..++.+|.
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQL 83 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 33444555555555555555555555432 2 344455555555555555555555555544 22344555555555
Q ss_pred hcCChHHHHHHhhcCC
Q 007519 85 DAGRVCEARKLFEEMP 100 (600)
Q Consensus 85 ~~g~~~~A~~~~~~~~ 100 (600)
..|++++|+..|++..
T Consensus 84 ~~g~~~~A~~~~~~al 99 (281)
T 2c2l_A 84 EMESYDEAIANLQRAY 99 (281)
T ss_dssp HTTCHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHH
Confidence 5555555555555443
No 146
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.43 E-value=1.9e-06 Score=67.23 Aligned_cols=106 Identities=13% Similarity=0.089 Sum_probs=60.5
Q ss_pred HHHHHHHhcccCchHHHHHHHHHHHhhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHh
Q 007519 436 FLGILSACSHAGLVSRGWELFNAMFDVYKIQP-GPEHYVSMINLLGRAGKIKEAEEFVLRLP-FEP-DHRIWGALLGACG 512 (600)
Q Consensus 436 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~ 512 (600)
+..+...+...|++++|...++++... .| +...+..++..+...|++++|.+.+++.. ..| +...+..+...+.
T Consensus 7 ~~~~~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 7 LKEKGNKALSVGNIDDALQCYSEAIKL---DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 344444555555666666666555543 23 34455556666666666666666665542 223 3445555555566
Q ss_pred hhhCCHHHHHHHHHHHHhhCCCCCCcHHHHhHH
Q 007519 513 FCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNI 545 (600)
Q Consensus 513 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 545 (600)
..|++++|+..++++++..|+++..+..++.+
T Consensus 84 -~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 115 (118)
T 1elw_A 84 -FLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 115 (118)
T ss_dssp -HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred -HHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 66777777777777777777665555555443
No 147
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.42 E-value=1e-06 Score=69.98 Aligned_cols=106 Identities=10% Similarity=-0.080 Sum_probs=67.1
Q ss_pred HHHHHHHhcccCchHHHHHHHHHHHhhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHh
Q 007519 436 FLGILSACSHAGLVSRGWELFNAMFDVYKIQP-GPEHYVSMINLLGRAGKIKEAEEFVLRLP-FEP-DHRIWGALLGACG 512 (600)
Q Consensus 436 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~ 512 (600)
+......+...|++++|...|+++.+. .| +...+..++.+|.+.|++++|.+.+++.. ..| +...+..+..++.
T Consensus 7 ~~~~g~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 7 ARLEGKEYFTKSDWPNAVKAYTEMIKR---APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 444455556666666666666666653 34 45666667777777777777777766653 333 3455666666666
Q ss_pred hhhCCHHHHHHHHHHHHhhC------CCCCCcHHHHhHH
Q 007519 513 FCEGNAEIAEHAAKRLLELD------PLNAPAHVVLCNI 545 (600)
Q Consensus 513 ~~~g~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~ 545 (600)
..|++++|+..++++++++ |+++.+...+..+
T Consensus 84 -~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~ 121 (126)
T 3upv_A 84 -AVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKA 121 (126)
T ss_dssp -HTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHH
T ss_pred -HHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHH
Confidence 7778888888888877777 6555555555443
No 148
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=98.42 E-value=1.4e-07 Score=88.71 Aligned_cols=442 Identities=10% Similarity=0.101 Sum_probs=263.2
Q ss_pred CCccchhHHHHHHHhcCChhhHHHHhccCCCCCcchHHHHHHHHHcCCChhHHHHHhhhcCC--CChhhHHHHHHHHHhc
Q 007519 9 SLVVHLTSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPE--RNVVSWTAMICGLADA 86 (600)
Q Consensus 9 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~ 86 (600)
..+..|..|..+....|.+.+|++.|-+. .|+..|..++.+..+.|.+++-.+.+....+ .++..=+.|+-+|++.
T Consensus 52 n~p~VWs~LgkAqL~~~~v~eAIdsyIkA--~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~IDteLi~ayAk~ 129 (624)
T 3lvg_A 52 NEPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKT 129 (624)
T ss_dssp CCCCCSSSHHHHTTTSSSCTTTTTSSCCC--SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTTTTHHHHHHHHTS
T ss_pred CCccHHHHHHHHHHccCchHHHHHHHHhC--CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccHHHHHHHHHhh
Confidence 44567777888888878777777765544 4555577777777778888887777776665 4555666777788887
Q ss_pred CChHHHHHHhhcCCCCCceeHHHHHHHHHHCCChhHHHHHhhcCCCCCcccHHHHHHHHHhcCCHhHHHHHHHhcccCCc
Q 007519 87 GRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNV 166 (600)
Q Consensus 87 g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 166 (600)
++..+-.+++. .||..-...+..-|...|.++.|.-+|..+. .|.-|..++...|++..|.+.-++ -.++
T Consensus 130 ~rL~elEefl~---~~N~A~iq~VGDrcf~e~lYeAAKilys~is-----N~akLAstLV~L~~yq~AVdaArK--Ans~ 199 (624)
T 3lvg_A 130 NRLAELEEFIN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS-----NFGRLASTLVHLGEYQAAVDGARK--ANST 199 (624)
T ss_dssp CSSSTTTSTTS---CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSC-----CCTTTSSSSSSCSGGGSSTTTTTT--CCSS
T ss_pred CcHHHHHHHHc---CCCcccHHHHHHHHHHccCHHHHHHHHHhCc-----cHHHHHHHHHHHHHHHHHHHHHHh--cCCh
Confidence 77555333222 2666667777777778888887777777553 334445556666776666544332 2577
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHccC-CCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhhhcCCCCCChhhHHHHHHHH
Q 007519 167 VTWTSMISGYCRAGEVEEGYCLFRRM-PRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGY 245 (600)
Q Consensus 167 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 245 (600)
.||..+-.+|...+.+.-|.-.--.+ ..+| -...++..|-..|.+++-+.+++..... -......|+-|.-.|
T Consensus 200 ktWKeV~~ACvd~~EfrLAqicGLniIvhad--eL~elv~~YE~~G~f~ELIsLlEaglgl----ErAHmGmFTELaILY 273 (624)
T 3lvg_A 200 RTWKEVCFACVDGKEFRLAQMCGLHIVVHAD--ELEELINYYQDRGYFEELITMLEAALGL----ERAHMGMFTELAILY 273 (624)
T ss_dssp CSHHHHTHHHHHSCTTTTTTHHHHHHHCCSS--CCSGGGSSSSTTCCCTTSTTTHHHHTTS----TTCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHhCchHHHHHHHhcchhcccHH--HHHHHHHHHHhCCCHHHHHHHHHHHhCC----CchhHHHHHHHHHHH
Confidence 88888888888888877654332111 1111 1223556677888888888888887732 134456666676666
Q ss_pred HhcCChhhHHHHhcccC-----------CCCchhHHHHHHHHHhcCChHHHHHHHhhC-------------CC--CChhh
Q 007519 246 IRFGRLEEAQNLFDTVP-----------VRDEISWTSMIDGYLSVGQVSNAYYLFHNM-------------PD--RDAVA 299 (600)
Q Consensus 246 ~~~~~~~~a~~~~~~~~-----------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-------------~~--~~~~~ 299 (600)
++- +.++..+.++..- -.....|..++-.|.+-.+++.|....-+- .. .|...
T Consensus 274 sKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ltMi~h~~~Aw~h~~Fkdii~KVaN~Ei 352 (624)
T 3lvg_A 274 SKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVEL 352 (624)
T ss_dssp HSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHHTTTSCHHHHCCGGGGTTTGGGCSCSHH
T ss_pred Hhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHHHHhCChhhccHHHHHHHHHHcchHHH
Confidence 654 4555555544432 124557888888888888888775432111 00 34555
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhcccchhhhHHHHHHHhhhcCCCchhHHHHHHHHHHh
Q 007519 300 WTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAK 379 (600)
Q Consensus 300 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 379 (600)
|...|.-|.+.. +...-.++.-+.. .+.++ .+++.+.+.+++.....++..... ..+..+-.++-+.|..
T Consensus 353 yYKAi~FYL~e~-P~lL~DLL~vL~p-rlDh~-----RvV~~~~k~~~LpLIkpYL~~Vq~---~N~~aVNeAln~L~IE 422 (624)
T 3lvg_A 353 YYRAIQFYLEFK-PLLLNDLLMVLSP-RLDHT-----RAVNYFSKVKQLPLVKPYLRSVQN---HNNKSVNESLNNLFIT 422 (624)
T ss_dssp HHHHHHHHTTSC-CTTSHHHHHHHCT-TCCST-----TTHHHHHTTTCGGGGTGGGTSCCC---SCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-hHHHHHHHHhccc-cCChH-----HHHHHHHhcCCchhhHHHHHHHHH---hhHHHHHHHHHHHHhh
Confidence 555555554322 2222222222211 11111 223334444454444444333222 2245556677778888
Q ss_pred cCChHHHHHHHhcCC------------CCChhhHHH-HHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhccc
Q 007519 380 CGVIDNAYNIFSNMV------------SRDLVSWNS-MVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHA 446 (600)
Q Consensus 380 ~~~~~~A~~~~~~~~------------~~~~~~~~~-l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 446 (600)
..+++.-+.-.+.-. +....-|.. -...|.+.+++++++.+.+ ....|.-.+...+.+
T Consensus 423 EEDy~~LR~SId~ydNFD~i~LA~rLEkHeL~eFRrIAA~LYkkn~rw~qsi~l~K---------kDklykDAietAa~S 493 (624)
T 3lvg_A 423 EEDYQALRTSIDAYDNFDNISLAQRLEKHELIEFRRIAAYLFKGNNRWKQSVELCK---------KDSLYKDAMQYASES 493 (624)
T ss_dssp TTCCHHHHHTTSSCCCSCTTHHHHHHHTCSSHHHHHHHHHHHHTTCHHHHHSSCSS---------TTCCTTGGGTTTTTC
T ss_pred hhhHHHHHHHHHHhccccHHHHHHHHhhCchHHHHHHHHHHHHhcccHHHHHHHHH---------hcccHHHHHHHHHHc
Confidence 888776665544332 122222332 3345667777777766532 222344456667778
Q ss_pred CchHHHHHHHHHHHhhcCCCCCcchHHHHHHHHhhcCChHHHHHHH
Q 007519 447 GLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFV 492 (600)
Q Consensus 447 g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 492 (600)
|+.+-+.++++-..+. -+...+.+.+..|...=+.+-++++-
T Consensus 494 ~~~elaeeLL~yFv~~----g~~EcF~a~LytCYdLlrpDvVlEla 535 (624)
T 3lvg_A 494 KDTELAEELLQWFLQE----EKRECFGACLFTCYDLLRPDVVLETA 535 (624)
T ss_dssp CCTTHHHHHHHHHHHH----CSTHHHHHHHHHTSSSSSCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHc----CchHHHHHHHHHHhhccChHHHHHHH
Confidence 8888888888887764 34556777777777777888888774
No 149
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.42 E-value=3.9e-06 Score=73.04 Aligned_cols=153 Identities=10% Similarity=-0.048 Sum_probs=111.3
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccCchHHHHHHHHHHHhhc---CCCC-CcchHHHHHHHHhhcCC
Q 007519 409 SHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVY---KIQP-GPEHYVSMINLLGRAGK 484 (600)
Q Consensus 409 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~p-~~~~~~~l~~~~~~~g~ 484 (600)
...|++++|.++++.+... .......+..+...+...|++++|...++++.... +..| ...++..++..|...|+
T Consensus 3 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ----CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 4679999999966655431 12344677788888999999999999999887632 1222 35678889999999999
Q ss_pred hHHHHHHHHhCC----CCC-C----HHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCC--CC----CcHHHHhHHHHhh
Q 007519 485 IKEAEEFVLRLP----FEP-D----HRIWGALLGACGFCEGNAEIAEHAAKRLLELDPL--NA----PAHVVLCNIYAAS 549 (600)
Q Consensus 485 ~~~A~~~~~~~~----~~p-~----~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~--~~----~~~~~l~~~~~~~ 549 (600)
+++|.+.+++.. ..+ + ...+..+...+. ..|++++|+..+++++++.+. ++ .++..++.++...
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~ 160 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVAL-HFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQE 160 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHC
Confidence 999999987753 122 2 234666666777 899999999999999975322 22 2357899999999
Q ss_pred CCcHHHHHHHHHHh
Q 007519 550 GRHVEEHKLRMDMG 563 (600)
Q Consensus 550 g~~~~A~~~~~~~~ 563 (600)
|++++|.+.++...
T Consensus 161 g~~~~A~~~~~~al 174 (203)
T 3gw4_A 161 KNLLEAQQHWLRAR 174 (203)
T ss_dssp TCHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHH
Confidence 99999999665554
No 150
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.41 E-value=1.4e-06 Score=70.29 Aligned_cols=99 Identities=8% Similarity=-0.126 Sum_probs=59.4
Q ss_pred ChhHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHH
Q 007519 432 NSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQP-GPEHYVSMINLLGRAGKIKEAEEFVLRLP-FEP-DHRIWGALL 508 (600)
Q Consensus 432 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~ 508 (600)
+...+..+...+...|++++|...|+++... .| +...+..++.++...|++++|...+++.. ..| +...+..+.
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 84 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITR---NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 84 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh---CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHH
Confidence 3455555666666666666666666666653 33 35556666666666666666666666543 233 344555555
Q ss_pred HHHhhhhCCHHHHHHHHHHHHhhCCC
Q 007519 509 GACGFCEGNAEIAEHAAKRLLELDPL 534 (600)
Q Consensus 509 ~~~~~~~g~~~~a~~~~~~~~~~~p~ 534 (600)
..+. ..|++++|+..+++++++.|+
T Consensus 85 ~~~~-~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 85 QCQL-EMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHH-HTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHH-HHhhHHHHHHHHHHHHHHChh
Confidence 5555 666666666666666666664
No 151
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.41 E-value=9.3e-07 Score=74.11 Aligned_cols=96 Identities=14% Similarity=-0.025 Sum_probs=84.9
Q ss_pred CcchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCCCcHHHHhHH
Q 007519 468 GPEHYVSMINLLGRAGKIKEAEEFVLRLP-FEP-DHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNI 545 (600)
Q Consensus 468 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 545 (600)
+...+..++..+.+.|++++|.+.|++.. ..| +...|..+..++. ..|++++|+..++++++++|+++..+..++.+
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYS-ASGQHEKAAEDAELATVVDPKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHH-HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 46678889999999999999999999874 445 5677888888888 99999999999999999999999999999999
Q ss_pred HHhhCCcHHHHHHHHHHhh
Q 007519 546 YAASGRHVEEHKLRMDMGL 564 (600)
Q Consensus 546 ~~~~g~~~~A~~~~~~~~~ 564 (600)
|...|++++|...++...+
T Consensus 89 ~~~~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIE 107 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHH
Confidence 9999999999997766554
No 152
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.41 E-value=8.8e-07 Score=70.45 Aligned_cols=94 Identities=12% Similarity=0.063 Sum_probs=43.7
Q ss_pred HHHHHHHhcccCchHHHHHHHHHHHhhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHhCC-C----CCC----HHHHH
Q 007519 436 FLGILSACSHAGLVSRGWELFNAMFDVYKIQP-GPEHYVSMINLLGRAGKIKEAEEFVLRLP-F----EPD----HRIWG 505 (600)
Q Consensus 436 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~----~p~----~~~~~ 505 (600)
+..+...+.+.|++++|++.|+++.+. .| +...|..++.+|.+.|++++|++.+++.. . .++ ..++.
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~---~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIEL---DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 344444555555555555555555432 33 24445555555555555555555554432 1 111 11233
Q ss_pred HHHHHHhhhhCCHHHHHHHHHHHHhhCC
Q 007519 506 ALLGACGFCEGNAEIAEHAAKRLLELDP 533 (600)
Q Consensus 506 ~l~~~~~~~~g~~~~a~~~~~~~~~~~p 533 (600)
.+..++. ..|++++|+..|+++++..|
T Consensus 88 ~lg~~~~-~~~~~~~A~~~~~kal~~~~ 114 (127)
T 4gcn_A 88 RAGNAFQ-KQNDLSLAVQWFHRSLSEFR 114 (127)
T ss_dssp HHHHHHH-HTTCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHH-HcCCHHHHHHHHHHHHhhCc
Confidence 3333444 45555555555555555444
No 153
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.41 E-value=1.5e-06 Score=75.43 Aligned_cols=165 Identities=10% Similarity=-0.031 Sum_probs=99.0
Q ss_pred HhcCChHHHHHHHhcCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccCchHHHHH
Q 007519 378 AKCGVIDNAYNIFSNMVS---RDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWE 454 (600)
Q Consensus 378 ~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~ 454 (600)
...|+++++.+.++.-.. .....+..+...+...|++++|+..|++.... .|+...+... ....-.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~--------~~~~~~- 83 (198)
T 2fbn_A 15 ENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDF--FIHTEEWDDQ--------ILLDKK- 83 (198)
T ss_dssp -------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TTTCTTCCCH--------HHHHHH-
T ss_pred hhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--Hhcccccchh--------hHHHHH-
Confidence 334555555555543321 13345555666666777777777777776653 2221100000 000000
Q ss_pred HHHHHHhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhC
Q 007519 455 LFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLP-FEP-DHRIWGALLGACGFCEGNAEIAEHAAKRLLELD 532 (600)
Q Consensus 455 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~ 532 (600)
.. .....+..++.+|...|++++|.+.+++.. ..| +...+..+..++. ..|++++|+..+++++++.
T Consensus 84 --~~--------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~-~~~~~~~A~~~~~~al~~~ 152 (198)
T 2fbn_A 84 --KN--------IEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANM-YFGFLEEAKENLYKAASLN 152 (198)
T ss_dssp --HH--------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHS
T ss_pred --HH--------HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH-HcccHHHHHHHHHHHHHHC
Confidence 00 012467778888889999999998888764 334 5667777888888 9999999999999999999
Q ss_pred CCCCCcHHHHhHHHHhhCCcHHHHH-HHHHHhh
Q 007519 533 PLNAPAHVVLCNIYAASGRHVEEHK-LRMDMGL 564 (600)
Q Consensus 533 p~~~~~~~~l~~~~~~~g~~~~A~~-~~~~~~~ 564 (600)
|+++.++..++.++...|+.+++.+ .++.+-.
T Consensus 153 p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~ 185 (198)
T 2fbn_A 153 PNNLDIRNSYELCVNKLKEARKKDKLTFGGMFD 185 (198)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHC-----------
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999888888874 5554433
No 154
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.40 E-value=2.6e-06 Score=76.61 Aligned_cols=173 Identities=8% Similarity=-0.042 Sum_probs=109.5
Q ss_pred cCCChhHHHHHhhhcCC--C-ChhhHHHH-------HHHHHhcCChHHHHHHhhcCCC--C-------C-----------
Q 007519 54 QNGRLSEARRLFEEMPE--R-NVVSWTAM-------ICGLADAGRVCEARKLFEEMPE--R-------N----------- 103 (600)
Q Consensus 54 ~~~~~~~A~~~~~~~~~--~-~~~~~~~l-------~~~~~~~g~~~~A~~~~~~~~~--~-------~----------- 103 (600)
..++...|.+.|.++.+ | ....|..+ ..++.+.++..+++..+..-.+ | +
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~~ 97 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITYP 97 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEEE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccccccc
Confidence 57888888888888775 2 23456655 4555555555666555555443 1 1
Q ss_pred ----ceeHHHHHHHHHHCCChhHHHHHhhcCCC--CCcccHHHHHHHHHhcCCHhHHHHHHHhcccC-C----chhHHHH
Q 007519 104 ----VVSWNSMVVGLIRNGELNEARKVFNSMPI--KNVISWNAMIAGYVECCMMGEAIVLFEEMEER-N----VVTWTSM 172 (600)
Q Consensus 104 ----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~----~~~~~~l 172 (600)
...+..++..+...|++++|.++|+.+.. |+......+...+.+.+++++|+..|+...+. + ...+..+
T Consensus 98 v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~L 177 (282)
T 4f3v_A 98 VTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAH 177 (282)
T ss_dssp CSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHH
T ss_pred cCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHH
Confidence 01233456677777888888888887765 33234455555677777777777777766542 1 2355666
Q ss_pred HHHHHhcCChhHHHHHHccCCC-CC-----cchHHHHHHHHHhcCChhHHHHHHHHHHhh
Q 007519 173 ISGYCRAGEVEEGYCLFRRMPR-KN-----VVSWTAMIGGFAWNGFHKESLLLFIEMKGI 226 (600)
Q Consensus 173 ~~~~~~~g~~~~A~~~~~~~~~-~~-----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 226 (600)
..++.+.|++++|++.|++... +. .........++.+.|+.++|..+|+++...
T Consensus 178 G~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 178 GVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 7777777777777777776642 21 124455666677777777777777777765
No 155
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.39 E-value=3e-06 Score=70.99 Aligned_cols=126 Identities=10% Similarity=-0.024 Sum_probs=79.6
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCC-CcchHHHHHHH
Q 007519 400 SWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQP-GPEHYVSMINL 478 (600)
Q Consensus 400 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~ 478 (600)
.|..+...+...|++++|...|++..... +.+...+..+..++...|++++|...++++.+. .| +...+..++.+
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~a~~ 90 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL---DKKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcccHHHHHHHHHH
Confidence 45555666666777777777777766642 334556666666677777777777777777654 34 45667777777
Q ss_pred HhhcCChHHHHHHHHhCC-CCC-CHHHHHHH--HHHHhhhhCCHHHHHHHHHHHHh
Q 007519 479 LGRAGKIKEAEEFVLRLP-FEP-DHRIWGAL--LGACGFCEGNAEIAEHAAKRLLE 530 (600)
Q Consensus 479 ~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l--~~~~~~~~g~~~~a~~~~~~~~~ 530 (600)
+...|++++|.+.+++.. ..| +...+..+ ...+. ..|++++|+..+++..+
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIV-KQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH-HHHHHHHHHHcccchHH
Confidence 777777777777776653 233 33333222 22244 66777888777777655
No 156
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.39 E-value=3.2e-06 Score=69.14 Aligned_cols=108 Identities=13% Similarity=-0.005 Sum_probs=63.6
Q ss_pred HHHHHHHHhcccCchHHHHHHHHHHHhhcCCCCC----cchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHH
Q 007519 435 TFLGILSACSHAGLVSRGWELFNAMFDVYKIQPG----PEHYVSMINLLGRAGKIKEAEEFVLRLP-FEP-DHRIWGALL 508 (600)
Q Consensus 435 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~ 508 (600)
.+..+...+...|++++|.+.|+++.+ ..|+ ...+..++..|...|++++|.+.+++.. ..| +...+..+.
T Consensus 30 ~~~~~a~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a 106 (148)
T 2dba_A 30 QLRKEGNELFKCGDYGGALAAYTQALG---LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRS 106 (148)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHT---SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH---HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHH
Confidence 344444455555555555555555543 2343 4455556666666666666666665543 223 345555666
Q ss_pred HHHhhhhCCHHHHHHHHHHHHhhCCCCCCcHHHHhHHH
Q 007519 509 GACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIY 546 (600)
Q Consensus 509 ~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 546 (600)
..+. ..|++++|+..+++++++.|+++.++..+..+.
T Consensus 107 ~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 143 (148)
T 2dba_A 107 QALE-KLGRLDQAVLDLQRCVSLEPKNKVFQEALRNIS 143 (148)
T ss_dssp HHHH-HHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHH-HcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 6666 777777777777777777776666655555443
No 157
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.39 E-value=2e-06 Score=85.48 Aligned_cols=145 Identities=10% Similarity=0.010 Sum_probs=98.8
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCCCcchHHHHHH
Q 007519 398 LVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMIN 477 (600)
Q Consensus 398 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 477 (600)
...|..+...+.+.|++++|+..|++..+. .|+...+ . -+...+ ... -....|..++.
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~----------~-~~~~~~-~~~--------~~~~~~~nla~ 325 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSW--LEMEYGL----------S-EKESKA-SES--------FLLAAFLNLAM 325 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HTTCCSC----------C-HHHHHH-HHH--------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccC----------C-hHHHHH-HHH--------HHHHHHHHHHH
Confidence 345666666666777777777777766653 2221100 0 000000 000 01457888999
Q ss_pred HHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCCCcHHHHhHHHHhhCCcHHH
Q 007519 478 LLGRAGKIKEAEEFVLRLP-FEP-DHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEE 555 (600)
Q Consensus 478 ~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 555 (600)
+|.+.|++++|+..+++.. ..| +...+..+..++. ..|++++|+..|+++++++|++..++..++.++.+.|+++++
T Consensus 326 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~-~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a 404 (457)
T 1kt0_A 326 CYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQL-LMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNER 404 (457)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHH-HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998864 344 5677888888888 999999999999999999999999999999999999999998
Q ss_pred HH-HHHHHhhc
Q 007519 556 HK-LRMDMGLK 565 (600)
Q Consensus 556 ~~-~~~~~~~~ 565 (600)
.+ +++.|-.+
T Consensus 405 ~~~~~~~~f~k 415 (457)
T 1kt0_A 405 DRRIYANMFKK 415 (457)
T ss_dssp HHHHHHHC---
T ss_pred HHHHHHHHHhh
Confidence 87 66665443
No 158
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.36 E-value=2.3e-06 Score=66.74 Aligned_cols=96 Identities=14% Similarity=0.070 Sum_probs=83.8
Q ss_pred cchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCCCcHHHHhHHH
Q 007519 469 PEHYVSMINLLGRAGKIKEAEEFVLRLP-FEP-DHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIY 546 (600)
Q Consensus 469 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 546 (600)
...+..++..+...|++++|.+.+++.. ..| +...+..+...+. ..|++++|+..++++++..|+++..+..++.++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYA-KKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHH-hhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 4567788899999999999999999874 334 6677777888888 999999999999999999999999999999999
Q ss_pred HhhCCcHHHHHHHHHHhhc
Q 007519 547 AASGRHVEEHKLRMDMGLK 565 (600)
Q Consensus 547 ~~~g~~~~A~~~~~~~~~~ 565 (600)
...|++++|.+.++...+.
T Consensus 83 ~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTT
T ss_pred HHHhhHHHHHHHHHHHHHc
Confidence 9999999999988766554
No 159
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.34 E-value=1.1e-06 Score=69.86 Aligned_cols=89 Identities=8% Similarity=-0.031 Sum_probs=46.8
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCCC-------cHHH
Q 007519 471 HYVSMINLLGRAGKIKEAEEFVLRLP-FEP-DHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAP-------AHVV 541 (600)
Q Consensus 471 ~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~-------~~~~ 541 (600)
.+..++..+.+.|++++|++.|++.. ..| +...|..+..++. ..|++++|+..+++++++.|+++. +|..
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYF-EEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHH-HhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 34445555555566666655555542 233 3344445555555 555666666666655555554332 3444
Q ss_pred HhHHHHhhCCcHHHHHHHH
Q 007519 542 LCNIYAASGRHVEEHKLRM 560 (600)
Q Consensus 542 l~~~~~~~g~~~~A~~~~~ 560 (600)
++.++...|++++|++.++
T Consensus 89 lg~~~~~~~~~~~A~~~~~ 107 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFH 107 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHH
Confidence 5555555566666555443
No 160
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.33 E-value=2.7e-06 Score=68.66 Aligned_cols=94 Identities=19% Similarity=-0.016 Sum_probs=53.0
Q ss_pred CcchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCCCcHHHHhHH
Q 007519 468 GPEHYVSMINLLGRAGKIKEAEEFVLRLP-FEP-DHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNI 545 (600)
Q Consensus 468 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 545 (600)
+...+..++..+...|++++|...+++.. ..| +...+..+...+. ..|++++|+..++++++++|+++..+..++.+
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 86 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYL-KMQQPEQALADCRRALELDGQSVKAHFFLGQC 86 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 34455555666666666666666655542 223 3444455555555 56666666666666666666555666666666
Q ss_pred HHhhCCcHHHHHHHHHH
Q 007519 546 YAASGRHVEEHKLRMDM 562 (600)
Q Consensus 546 ~~~~g~~~~A~~~~~~~ 562 (600)
+...|++++|...++..
T Consensus 87 ~~~~~~~~~A~~~~~~a 103 (137)
T 3q49_B 87 QLEMESYDEAIANLQRA 103 (137)
T ss_dssp HHHTTCHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHH
Confidence 66666666666644443
No 161
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.33 E-value=2.3e-06 Score=68.49 Aligned_cols=97 Identities=9% Similarity=-0.053 Sum_probs=85.4
Q ss_pred CcchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCCCcHHHHhHH
Q 007519 468 GPEHYVSMINLLGRAGKIKEAEEFVLRLP-FEP-DHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNI 545 (600)
Q Consensus 468 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 545 (600)
+...+..++..+...|++++|.+.+++.. ..| +...+..+...+. ..|++++|+..++++++..|+++.++..++.+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 93 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYT-KLLEFQLALKDCEECIQLEPTFIKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHT-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH-HhccHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 46678889999999999999999998864 445 5677888888888 99999999999999999999999999999999
Q ss_pred HHhhCCcHHHHHHHHHHhhc
Q 007519 546 YAASGRHVEEHKLRMDMGLK 565 (600)
Q Consensus 546 ~~~~g~~~~A~~~~~~~~~~ 565 (600)
+...|++++|.+.++...+.
T Consensus 94 ~~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHh
Confidence 99999999999988766554
No 162
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.32 E-value=8.1e-06 Score=64.23 Aligned_cols=92 Identities=17% Similarity=0.339 Sum_probs=42.0
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCC-CcchHHHHHHH
Q 007519 400 SWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQP-GPEHYVSMINL 478 (600)
Q Consensus 400 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~ 478 (600)
.|..+...+...|++++|.++++++.... +.+...+..+...+...|++++|..+++++.+. .| +...+..++..
T Consensus 11 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~la~~ 86 (125)
T 1na0_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL---DPNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh---CCccHHHHHHHHHH
Confidence 33444444444445555555554444431 223334444444444455555555555544432 12 33444445555
Q ss_pred HhhcCChHHHHHHHHhC
Q 007519 479 LGRAGKIKEAEEFVLRL 495 (600)
Q Consensus 479 ~~~~g~~~~A~~~~~~~ 495 (600)
|...|++++|.+.++++
T Consensus 87 ~~~~~~~~~A~~~~~~~ 103 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKA 103 (125)
T ss_dssp HHHTTCHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHH
Confidence 55555555555555443
No 163
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.28 E-value=3.4e-06 Score=66.27 Aligned_cols=97 Identities=18% Similarity=0.051 Sum_probs=67.8
Q ss_pred HHHHHHHhcccCchHHHHHHHHHHHhhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHh
Q 007519 436 FLGILSACSHAGLVSRGWELFNAMFDVYKIQP-GPEHYVSMINLLGRAGKIKEAEEFVLRLP-FEP-DHRIWGALLGACG 512 (600)
Q Consensus 436 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~ 512 (600)
+..+...+.+.|++++|...++++.+. .| +...+..++.++...|++++|+..+++.. ..| +...+..+..++.
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQK---EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT 96 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 334455667778888888888887764 55 56777788888888888888888887764 444 4556666777777
Q ss_pred hhhCCHHHHHHHHHHHHhhCCCCC
Q 007519 513 FCEGNAEIAEHAAKRLLELDPLNA 536 (600)
Q Consensus 513 ~~~g~~~~a~~~~~~~~~~~p~~~ 536 (600)
..|++++|+..++++++.+|+++
T Consensus 97 -~~g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 97 -NEHNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp -HHHHHHHHHHHHHHHHC------
T ss_pred -HcCCHHHHHHHHHHHHHhCcCCC
Confidence 88888888888888888888543
No 164
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.28 E-value=1.7e-06 Score=86.31 Aligned_cols=118 Identities=8% Similarity=-0.042 Sum_probs=95.3
Q ss_pred HHHHhcccCchHHHHHHHHHHHhhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHhhhh
Q 007519 439 ILSACSHAGLVSRGWELFNAMFDVYKIQP-GPEHYVSMINLLGRAGKIKEAEEFVLRLP-FEP-DHRIWGALLGACGFCE 515 (600)
Q Consensus 439 l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~ 515 (600)
+...+...|++++|.+.++++.+. .| +...+..++.+|.+.|++++|.+.+++.. ..| +...+..+..++. ..
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~-~~ 87 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIEL---NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM-AL 87 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHH-HH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-Hc
Confidence 344566788999999999988865 56 47788899999999999999999998864 455 4667788888888 99
Q ss_pred CCHHHHHHHHHHHHhhCCCCCCcHHHHhHH--HHhhCCcHHHHHHHH
Q 007519 516 GNAEIAEHAAKRLLELDPLNAPAHVVLCNI--YAASGRHVEEHKLRM 560 (600)
Q Consensus 516 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~A~~~~~ 560 (600)
|++++|+..+++++++.|+++..+..++.+ +.+.|++++|.+.++
T Consensus 88 g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 88 GKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp TCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 999999999999999999999999888888 888899999999776
No 165
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.27 E-value=5.1e-06 Score=67.95 Aligned_cols=97 Identities=13% Similarity=-0.067 Sum_probs=85.2
Q ss_pred CcchHHHHHHHHhhcCChHHHHHHHHhCC-CCCC----HHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCCCcHHHH
Q 007519 468 GPEHYVSMINLLGRAGKIKEAEEFVLRLP-FEPD----HRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVL 542 (600)
Q Consensus 468 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~----~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 542 (600)
+...+..++..+...|++++|.+.+++.. ..|+ ...+..+...+. ..|++++|+..++++++..|+++..+..+
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 105 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHL-KLEDYDKAETEASKAIEKDGGDVKALYRR 105 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHH-HHccHHHHHHHHHHHHhhCccCHHHHHHH
Confidence 46678889999999999999999998864 6676 466777777787 99999999999999999999999999999
Q ss_pred hHHHHhhCCcHHHHHHHHHHhhc
Q 007519 543 CNIYAASGRHVEEHKLRMDMGLK 565 (600)
Q Consensus 543 ~~~~~~~g~~~~A~~~~~~~~~~ 565 (600)
+.++...|++++|...++...+.
T Consensus 106 a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 106 SQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHc
Confidence 99999999999999988766554
No 166
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.26 E-value=9.9e-06 Score=64.37 Aligned_cols=89 Identities=10% Similarity=0.056 Sum_probs=38.3
Q ss_pred HHHHHHHhcCChHHHHHHHhcCC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccCc
Q 007519 372 CLISMYAKCGVIDNAYNIFSNMV---SRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGL 448 (600)
Q Consensus 372 ~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~ 448 (600)
.+...+...|++++|...|++.. +.+...+..+...+...|++++|+..+++..... +.+...+..+..++...|+
T Consensus 17 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 95 (131)
T 2vyi_A 17 TEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLALSSLNK 95 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHHHHhCC
Confidence 33444444444444444444432 2233344444444444444444444444444431 2223333444444444444
Q ss_pred hHHHHHHHHHHHh
Q 007519 449 VSRGWELFNAMFD 461 (600)
Q Consensus 449 ~~~a~~~~~~~~~ 461 (600)
+++|...++++.+
T Consensus 96 ~~~A~~~~~~~~~ 108 (131)
T 2vyi_A 96 HVEAVAYYKKALE 108 (131)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 4444444444443
No 167
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.26 E-value=0.00041 Score=64.65 Aligned_cols=169 Identities=9% Similarity=0.025 Sum_probs=90.4
Q ss_pred hCCChhHHHHHHHHHHHCCCCCChhH-HHHHHHHHhccc-chhhhHHHHHHHhhhcCCCchhHHHHHHHHHHhc-C-ChH
Q 007519 309 QNELFVEATYLFMEMRAHGVPPLNAT-FSVLFGAAGATA-NIDLGRQIHCVLMKTESESDLILENCLISMYAKC-G-VID 384 (600)
Q Consensus 309 ~~g~~~~a~~~~~~m~~~g~~p~~~~-~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-~~~ 384 (600)
..+..++|++++++++.. .|+..| ++.--.++...+ .++++..++..+.....+ +..+++.-...+... + +++
T Consensus 66 ~~e~se~AL~lt~~~L~~--nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l~~~~~~ 142 (349)
T 3q7a_A 66 KEEKSERALELTEIIVRM--NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRISPQDPV 142 (349)
T ss_dssp TTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHCCSCCH
T ss_pred hCCCCHHHHHHHHHHHHh--CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcCCChH
Confidence 344445677777777664 444332 333333333444 355566666555544333 333444443344443 4 666
Q ss_pred HHHHHHhcCC---CCChhhHHHHHHHHHhcCChH--------HHHHHHHHHHHcCCCCChhHHHHHHHHhcccCc-----
Q 007519 385 NAYNIFSNMV---SRDLVSWNSMVMGFSHHGLAN--------ETLKVFESMLESGTHPNSVTFLGILSACSHAGL----- 448 (600)
Q Consensus 385 ~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~--------~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~----- 448 (600)
+++.+++++. +.|..+|+.-...+.+.|.++ ++++.++++.+.. +-|...|+.-...+.+.+.
T Consensus 143 ~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~~ 221 (349)
T 3q7a_A 143 SEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETSS 221 (349)
T ss_dssp HHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCCH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccch
Confidence 7777777665 344556655555554444444 6777777776643 3344555554444444443
Q ss_pred --hHHHHHHHHHHHhhcCCCC-CcchHHHHHHHHhhcCC
Q 007519 449 --VSRGWELFNAMFDVYKIQP-GPEHYVSMINLLGRAGK 484 (600)
Q Consensus 449 --~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~ 484 (600)
++++++.++++... .| |...|+.+-..+.+.|+
T Consensus 222 ~~~~eELe~~~~aI~~---~P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 222 RSLQDELIYILKSIHL---IPHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp HHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhcCC
Confidence 56666666666643 45 45666666666655554
No 168
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.25 E-value=2.9e-06 Score=67.61 Aligned_cols=99 Identities=15% Similarity=0.048 Sum_probs=62.7
Q ss_pred HHHHHhcccCchHHHHHHHHHHHhhcCCCCC-c---chHHHHHHHHhhcCChHHHHHHHHhCC-CCCC----HHHHHHHH
Q 007519 438 GILSACSHAGLVSRGWELFNAMFDVYKIQPG-P---EHYVSMINLLGRAGKIKEAEEFVLRLP-FEPD----HRIWGALL 508 (600)
Q Consensus 438 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~---~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~----~~~~~~l~ 508 (600)
.+...+...|++++|...|+++.+. .|+ . ..+..++.++.+.|++++|.+.+++.. ..|+ ...+..+.
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la 83 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLEL---YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLG 83 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH---CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHH---CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHH
Confidence 3445566777777777777777654 332 2 366667777777777777777776653 2332 34455555
Q ss_pred HHHhhhhCCHHHHHHHHHHHHhhCCCCCCcHH
Q 007519 509 GACGFCEGNAEIAEHAAKRLLELDPLNAPAHV 540 (600)
Q Consensus 509 ~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 540 (600)
.++. ..|++++|+..++++++..|+++....
T Consensus 84 ~~~~-~~g~~~~A~~~~~~~~~~~p~~~~~~~ 114 (129)
T 2xev_A 84 LSQY-GEGKNTEAQQTLQQVATQYPGSDAARV 114 (129)
T ss_dssp HHHH-HTTCHHHHHHHHHHHHHHSTTSHHHHH
T ss_pred HHHH-HcCCHHHHHHHHHHHHHHCCCChHHHH
Confidence 5566 777777777777777777775544333
No 169
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.25 E-value=0.00021 Score=66.24 Aligned_cols=218 Identities=12% Similarity=0.084 Sum_probs=100.2
Q ss_pred HhCCChh-HHHHHHHHHHHCCCCCChhH-HHHHHHHHhcccc----------hhhhHHHHHHHhhhcCCCchhHHHHHHH
Q 007519 308 VQNELFV-EATYLFMEMRAHGVPPLNAT-FSVLFGAAGATAN----------IDLGRQIHCVLMKTESESDLILENCLIS 375 (600)
Q Consensus 308 ~~~g~~~-~a~~~~~~m~~~g~~p~~~~-~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 375 (600)
.+.|+++ +|+.+++.+... .|+..| ++.--..+...+. ++.+..++..+.....+ +..+|+.-.-
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~--nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PK-ny~aW~hR~w 116 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCW 116 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 3455554 678888887764 555443 2221111111111 34444555544443332 3334443333
Q ss_pred HHHhcC--ChHHHHHHHhcCC---CCChhhHHHHHHHHHhcCC-hHHHHHHHHHHHHcCCCCChhHHHHHHHHhccc---
Q 007519 376 MYAKCG--VIDNAYNIFSNMV---SRDLVSWNSMVMGFSHHGL-ANETLKVFESMLESGTHPNSVTFLGILSACSHA--- 446 (600)
Q Consensus 376 ~~~~~~--~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~--- 446 (600)
++...+ .+++++.+++.+. +.|...|+.-..++...|. ++++++.+.++.+.. +-|...|+.....+...
T Consensus 117 lL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SAW~~R~~ll~~l~~~ 195 (331)
T 3dss_A 117 LLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQ 195 (331)
T ss_dssp HHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHHSCC
T ss_pred HHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhhhc
Confidence 444444 3556666666554 4455555555555555555 356666666666542 22333333332222221
Q ss_pred -----------CchHHHHHHHHHHHhhcCCCC-CcchHHHHHHHHhhc-----------CChHHHHHHHHhCC-CCCCHH
Q 007519 447 -----------GLVSRGWELFNAMFDVYKIQP-GPEHYVSMINLLGRA-----------GKIKEAEEFVLRLP-FEPDHR 502 (600)
Q Consensus 447 -----------g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~~~-~~p~~~ 502 (600)
+.++++++.+..+... .| |...|+.+-..+.+. +.++++++.++++. ..|+.
T Consensus 196 ~~~~~~~~~~~~~~~eEle~~~~ai~~---~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~- 271 (331)
T 3dss_A 196 PDSGPQGRLPENVLLKELELVQNAFFT---DPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPEN- 271 (331)
T ss_dssp C------CCCHHHHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTC-
T ss_pred cccccccccchHHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCccc-
Confidence 3455555555555543 44 445555444444333 23445555554442 33432
Q ss_pred HHHHHHHHHh----hhhCCHHHHHHHHHHHHhhCC
Q 007519 503 IWGALLGACG----FCEGNAEIAEHAAKRLLELDP 533 (600)
Q Consensus 503 ~~~~l~~~~~----~~~g~~~~a~~~~~~~~~~~p 533 (600)
.|..+..+.. ...|..++....+.++++++|
T Consensus 272 ~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp 306 (331)
T 3dss_A 272 KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDP 306 (331)
T ss_dssp HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCG
T ss_pred chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCc
Confidence 2221111110 023444555555555555555
No 170
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.25 E-value=2.4e-06 Score=69.19 Aligned_cols=101 Identities=13% Similarity=0.037 Sum_probs=51.7
Q ss_pred HHHHHHHhcccCchHHHHHHHHHHHhhcCCCCC-------------cchHHHHHHHHhhcCChHHHHHHHHhCC-C----
Q 007519 436 FLGILSACSHAGLVSRGWELFNAMFDVYKIQPG-------------PEHYVSMINLLGRAGKIKEAEEFVLRLP-F---- 497 (600)
Q Consensus 436 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~---- 497 (600)
+......+...|++++|...|+++.+. .|+ ...|..++.++.+.|++++|+..+++.. .
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l---~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~ 90 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEI---SHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH---HTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhh---CCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 444555666777777777777777754 333 1144445555555555555554444432 2
Q ss_pred ---CCCH-HHH----HHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCCCcHH
Q 007519 498 ---EPDH-RIW----GALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHV 540 (600)
Q Consensus 498 ---~p~~-~~~----~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 540 (600)
.|+. ..| .....++. ..|++++|+..|++++++.|++..+..
T Consensus 91 ~e~~pd~~~A~~~~~~~rG~aL~-~lgr~eEAl~~y~kAlel~p~d~~~~~ 140 (159)
T 2hr2_A 91 GELNQDEGKLWISAVYSRALALD-GLGRGAEAMPEFKKVVEMIEERKGETP 140 (159)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHCCSCCT
T ss_pred ccCCCchHHHHHHHHHhHHHHHH-HCCCHHHHHHHHHHHHhcCCCcHHHHH
Confidence 4432 233 44444444 455555555555555555554444443
No 171
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.22 E-value=0.00013 Score=67.57 Aligned_cols=209 Identities=12% Similarity=0.085 Sum_probs=144.0
Q ss_pred hhHHHHHHHhhhcCCCchhHHHHHHHHHHhcCC----------hHHHHHHHhcCC---CCChhhHHHHHHHHHhcC--Ch
Q 007519 350 LGRQIHCVLMKTESESDLILENCLISMYAKCGV----------IDNAYNIFSNMV---SRDLVSWNSMVMGFSHHG--LA 414 (600)
Q Consensus 350 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~--~~ 414 (600)
.|......+...++. +..+++.--..+...+. +++++.+++.+. +.+..+|+.-...+...| ++
T Consensus 48 eaL~~t~~~L~~nP~-~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~ 126 (331)
T 3dss_A 48 SVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNW 126 (331)
T ss_dssp HHHHHHHHHHTTCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCH
T ss_pred HHHHHHHHHHHHCch-hHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccH
Confidence 566677766665433 22233332222222222 577888888776 668889988888888888 48
Q ss_pred HHHHHHHHHHHHcCCCCChhHHHHHHHHhcccCc-hHHHHHHHHHHHhhcCCCC-CcchHHHHHHHHhhc----------
Q 007519 415 NETLKVFESMLESGTHPNSVTFLGILSACSHAGL-VSRGWELFNAMFDVYKIQP-GPEHYVSMINLLGRA---------- 482 (600)
Q Consensus 415 ~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~-~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~---------- 482 (600)
++++.+++++.+.. +-|...|+.-...+...|. ++++++.+.++.+. .| |...|+....++.+.
T Consensus 127 ~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~---~p~N~SAW~~R~~ll~~l~~~~~~~~~~ 202 (331)
T 3dss_A 127 ARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR---NFSNYSSWHYRSCLLPQLHPQPDSGPQG 202 (331)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH---CSCCHHHHHHHHHHHHHHSCCC------
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHhhhcccccccc
Confidence 99999999999864 4566677666666667777 58999999999875 56 677888777776655
Q ss_pred ----CChHHHHHHHHhCC-CCC-CHHHHHHHHHHHhhhh-----------CCHHHHHHHHHHHHhhCCCCCCcHHHHhHH
Q 007519 483 ----GKIKEAEEFVLRLP-FEP-DHRIWGALLGACGFCE-----------GNAEIAEHAAKRLLELDPLNAPAHVVLCNI 545 (600)
Q Consensus 483 ----g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~-----------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 545 (600)
+.++++++.+++.. ..| |...|+.+...+. .. +.++++++.+++++++.|++..++..++..
T Consensus 203 ~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~-~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~ 281 (331)
T 3dss_A 203 RLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLG-AGSGRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILL 281 (331)
T ss_dssp CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH-SSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-hccCccccchHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHH
Confidence 45788888888764 445 6677776666655 33 357899999999999999875554444332
Q ss_pred H---HhhCCcHHHHHHHHHHhh
Q 007519 546 Y---AASGRHVEEHKLRMDMGL 564 (600)
Q Consensus 546 ~---~~~g~~~~A~~~~~~~~~ 564 (600)
. ...|..++...++..+.+
T Consensus 282 ~~~~~~~~~~~~~~~~l~~l~~ 303 (331)
T 3dss_A 282 MRALDPLLYEKETLQYFSTLKA 303 (331)
T ss_dssp HHHHCTTTTHHHHHHHHHHHHH
T ss_pred HHhhcccccHHHHHHHHHHHHH
Confidence 2 235777787777777664
No 172
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.21 E-value=2.7e-06 Score=81.63 Aligned_cols=135 Identities=13% Similarity=0.048 Sum_probs=98.4
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCC-CcchHHHHHHH
Q 007519 400 SWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQP-GPEHYVSMINL 478 (600)
Q Consensus 400 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~ 478 (600)
.+..+...+.+.|++++|+..|++..+. .|+.. .... .+... ...| +...|..++.+
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~--~~~~~----------~~~~-------~~~~~---~~~~~~~~~~~nla~~ 282 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRY--VEGSR----------AAAE-------DADGA---KLQPVALSCVLNIGAC 282 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHHH----------HHSC-------HHHHG---GGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHH--hhcCc----------cccC-------hHHHH---HHHHHHHHHHHHHHHH
Confidence 4555666666777777777777666542 00000 0000 01111 1234 46788899999
Q ss_pred HhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCCCcHHHHhHHHHhhCCcHHHH
Q 007519 479 LGRAGKIKEAEEFVLRLP-FEP-DHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEH 556 (600)
Q Consensus 479 ~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 556 (600)
|.+.|++++|.+.+++.. ..| +...+..+..++. ..|++++|+..++++++++|+++.++..+..++...++.+++.
T Consensus 283 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~-~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 283 KLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQ-GLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHH-HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998864 555 4667777888888 9999999999999999999999999999999999999988887
Q ss_pred H
Q 007519 557 K 557 (600)
Q Consensus 557 ~ 557 (600)
+
T Consensus 362 k 362 (370)
T 1ihg_A 362 K 362 (370)
T ss_dssp H
T ss_pred H
Confidence 6
No 173
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.21 E-value=8.3e-06 Score=62.76 Aligned_cols=99 Identities=16% Similarity=0.102 Sum_probs=64.3
Q ss_pred hHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHhCC-CCC---CHHHHHHHH
Q 007519 434 VTFLGILSACSHAGLVSRGWELFNAMFDVYKIQP-GPEHYVSMINLLGRAGKIKEAEEFVLRLP-FEP---DHRIWGALL 508 (600)
Q Consensus 434 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p---~~~~~~~l~ 508 (600)
..+..+...+...|++++|...++++.+. .| +...+..++.++...|++++|.+.+++.. ..| +...+..+.
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~ 83 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQL---DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKA 83 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHh---CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHH
Confidence 34445555566666667776666666653 23 45566667777777777777777776653 333 355666666
Q ss_pred HHHhhhh-CCHHHHHHHHHHHHhhCCCCC
Q 007519 509 GACGFCE-GNAEIAEHAAKRLLELDPLNA 536 (600)
Q Consensus 509 ~~~~~~~-g~~~~a~~~~~~~~~~~p~~~ 536 (600)
..+. .. |++++|++.++++++..|+++
T Consensus 84 ~~~~-~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 84 DALR-YIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HHHT-TCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHH-HHhCCHHHHHHHHHHHhhcccCCC
Confidence 6666 77 788888888888887777543
No 174
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.21 E-value=8.1e-05 Score=69.36 Aligned_cols=210 Identities=10% Similarity=0.100 Sum_probs=147.6
Q ss_pred hhhHHHHHHHhhhcCCCchhHHHHHHHHHHhcC-ChHHHHHHHhcCC---CCChhhHHHHHHHHHhc-C-ChHHHHHHHH
Q 007519 349 DLGRQIHCVLMKTESESDLILENCLISMYAKCG-VIDNAYNIFSNMV---SRDLVSWNSMVMGFSHH-G-LANETLKVFE 422 (600)
Q Consensus 349 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~-~-~~~~a~~~~~ 422 (600)
+.|..+...+...... +..+++.--..+...| .+++++..++.+. +.+..+|+.-...+... + ++++++++++
T Consensus 71 e~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~ 149 (349)
T 3q7a_A 71 ERALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIH 149 (349)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHH
Confidence 4567777777666544 3445566566666677 5999999999887 56778888877777776 7 8999999999
Q ss_pred HHHHcCCCCChhHHHHHHHHhcccCchH--------HHHHHHHHHHhhcCCCC-CcchHHHHHHHHhhcCC-------hH
Q 007519 423 SMLESGTHPNSVTFLGILSACSHAGLVS--------RGWELFNAMFDVYKIQP-GPEHYVSMINLLGRAGK-------IK 486 (600)
Q Consensus 423 ~m~~~~~~p~~~~~~~l~~~~~~~g~~~--------~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~-------~~ 486 (600)
++.+.. +-|...|..-...+.+.|.++ ++++.++++.+. .| |...|+....++.+.++ ++
T Consensus 150 k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~---dp~N~SAW~~R~~lL~~l~~~~~~~~~~~ 225 (349)
T 3q7a_A 150 GSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRV---DGRNNSAWGWRWYLRVSRPGAETSSRSLQ 225 (349)
T ss_dssp HHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHTTSTTCCCCHHHHH
T ss_pred HHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhccccccchHHHH
Confidence 998753 445566665555555556665 899999999875 56 67788888888888876 68
Q ss_pred HHHHHHHhCC-CCC-CHHHHHHHHHHHhhhhCCH--------------------HHHHHHHHHHHhhC------CCCCCc
Q 007519 487 EAEEFVLRLP-FEP-DHRIWGALLGACGFCEGNA--------------------EIAEHAAKRLLELD------PLNAPA 538 (600)
Q Consensus 487 ~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~g~~--------------------~~a~~~~~~~~~~~------p~~~~~ 538 (600)
++++.++++. ..| |...|+.+...+. +.|.. +........+.... +..+.+
T Consensus 226 eELe~~~~aI~~~P~n~SaW~Ylr~Ll~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~a 304 (349)
T 3q7a_A 226 DELIYILKSIHLIPHNVSAWNYLRGFLK-HFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLA 304 (349)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHH-hcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHH
Confidence 8888887764 445 6677877776665 55543 33333333333332 346677
Q ss_pred HHHHhHHHHhhCCcHHHHHHHHHHhh
Q 007519 539 HVVLCNIYAASGRHVEEHKLRMDMGL 564 (600)
Q Consensus 539 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 564 (600)
...|+.+|...|+.++|.++++.+.+
T Consensus 305 l~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 305 LEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 88999999999999999999988853
No 175
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.20 E-value=5.3e-05 Score=76.97 Aligned_cols=169 Identities=13% Similarity=0.009 Sum_probs=136.8
Q ss_pred CChHHHHHHHhcCC---CCChhhHHHHHHHHHhcCC----------hHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccC
Q 007519 381 GVIDNAYNIFSNMV---SRDLVSWNSMVMGFSHHGL----------ANETLKVFESMLESGTHPNSVTFLGILSACSHAG 447 (600)
Q Consensus 381 ~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g 447 (600)
...++|++.++.+. +.+..+|+.-..++...|+ ++++++.++++.+.. +-+...|..-..++.+.|
T Consensus 43 ~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 43 ELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLP 121 (567)
T ss_dssp CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCS
T ss_pred CCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcc
Confidence 34567788888876 5566788877777777776 899999999999853 445567777667777788
Q ss_pred --chHHHHHHHHHHHhhcCCCC-CcchHHHHHHHHhhcC-ChHHHHHHHHhCC-CCC-CHHHHHHHHHHHhhhh------
Q 007519 448 --LVSRGWELFNAMFDVYKIQP-GPEHYVSMINLLGRAG-KIKEAEEFVLRLP-FEP-DHRIWGALLGACGFCE------ 515 (600)
Q Consensus 448 --~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~------ 515 (600)
+++++++.++++.+. .| +...|+.-..++.+.| .++++.+.++++. ..| +...|+.....+. ..
T Consensus 122 ~~~~~~el~~~~k~l~~---d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~-~l~~~~~~ 197 (567)
T 1dce_A 122 EPNWARELELCARFLEA---DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLP-QLHPQPDS 197 (567)
T ss_dssp SCCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHH-HHSCCCCS
T ss_pred cccHHHHHHHHHHHHhh---ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHH-hhcccccc
Confidence 679999999999975 56 6788888888888999 8999999998875 555 6778888777765 42
Q ss_pred --------CCHHHHHHHHHHHHhhCCCCCCcHHHHhHHHHhhCCcHH
Q 007519 516 --------GNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVE 554 (600)
Q Consensus 516 --------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 554 (600)
+.++++++.+.+++..+|++..+|..+.+++.+.|+.++
T Consensus 198 ~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 198 GPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred cccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 567999999999999999999999999999999888555
No 176
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=98.20 E-value=1.7e-06 Score=81.52 Aligned_cols=257 Identities=14% Similarity=0.135 Sum_probs=167.0
Q ss_pred CcchHHHHHHHHHcCCChhHHHHHhhhcCCCChhhHHHHHHHHHhcCChHHHHHHhhcCCC--CCceeHHHHHHHHHHCC
Q 007519 41 NVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPE--RNVVSWNSMVVGLIRNG 118 (600)
Q Consensus 41 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~ 118 (600)
.+..|..|..+....++..+|++-|-+. .|+..|..++.+..+.|.+++-+..+....+ .++.+=+.|+-+|++.+
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIkA--~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~IDteLi~ayAk~~ 130 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTN 130 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCCC--SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTTTTHHHHHHHHTSC
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHhC--CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccHHHHHHHHHhhC
Confidence 3445666777776767776666655444 3444566667777777777777776666554 44445566677777776
Q ss_pred ChhHHHHHhhcCCCCCcccHHHHHHHHHhcCCHhHHHHHHHhcccCCchhHHHHHHHHHhcCChhHHHHHHccCCCCCcc
Q 007519 119 ELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVV 198 (600)
Q Consensus 119 ~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 198 (600)
+..+-.+++. .||......+..-|...|.++.|.-+|..+ ..|..|...+.+.|++..|.+.-++. .++.
T Consensus 131 rL~elEefl~---~~N~A~iq~VGDrcf~e~lYeAAKilys~i-----sN~akLAstLV~L~~yq~AVdaArKA--ns~k 200 (624)
T 3lvg_A 131 RLAELEEFIN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA--NSTR 200 (624)
T ss_dssp SSSTTTSTTS---CCSSSCTHHHHHHHHHSCCSTTSSTTGGGS-----CCCTTTSSSSSSCSGGGSSTTTTTTC--CSSC
T ss_pred cHHHHHHHHc---CCCcccHHHHHHHHHHccCHHHHHHHHHhC-----ccHHHHHHHHHHHHHHHHHHHHHHhc--CChh
Confidence 6655433222 255555566666666666666665555433 23444445556666666665443322 4778
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHhcCChhhHHHHhcccC---CCCchhHHHHHHH
Q 007519 199 SWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVP---VRDEISWTSMIDG 275 (600)
Q Consensus 199 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~ 275 (600)
||-.+-.+|...+.+..|..+--.+.- .|| -...++..|...|-+++-+.+++... ......++.|.-.
T Consensus 201 tWKeV~~ACvd~~EfrLAqicGLniIv------had--eL~elv~~YE~~G~f~ELIsLlEaglglErAHmGmFTELaIL 272 (624)
T 3lvg_A 201 TWKEVCFACVDGKEFRLAQMCGLHIVV------HAD--ELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAIL 272 (624)
T ss_dssp SHHHHTHHHHHSCTTTTTTHHHHHHHC------CSS--CCSGGGSSSSTTCCCTTSTTTHHHHTTSTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHhCchHHHHHHHhcchhcc------cHH--HHHHHHHHHHhCCCHHHHHHHHHHHhCCCchhHHHHHHHHHH
Confidence 999999999999999988777555542 222 23356677889999999999988776 4466678888888
Q ss_pred HHhcCChHHHHHHHhhCCC----C-------ChhhHHHHHHHHHhCCChhHHHH
Q 007519 276 YLSVGQVSNAYYLFHNMPD----R-------DAVAWTAMISGLVQNELFVEATY 318 (600)
Q Consensus 276 ~~~~~~~~~A~~~~~~~~~----~-------~~~~~~~li~~~~~~g~~~~a~~ 318 (600)
|++- +.++..+.++.... | ....|..++-.|.+-.+++.|..
T Consensus 273 YsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 273 YSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp HHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred HHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 8775 56666666655433 2 45578888888888888887754
No 177
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.19 E-value=1.7e-05 Score=75.12 Aligned_cols=144 Identities=8% Similarity=-0.023 Sum_probs=105.6
Q ss_pred CChHHHHHHHhcCC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC----------------hhHHHHHHH
Q 007519 381 GVIDNAYNIFSNMV---SRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPN----------------SVTFLGILS 441 (600)
Q Consensus 381 ~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~----------------~~~~~~l~~ 441 (600)
+++++|...++... +.+...|..+...+...|++++|+..|++.... .|+ ...+..+..
T Consensus 127 ~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~~~~~~nla~ 204 (336)
T 1p5q_A 127 KSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSW--LEYESSFSNEEAQKAQALRLASHLNLAM 204 (336)
T ss_dssp EEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--TTTCCCCCSHHHHHHHHHHHHHHHHHHH
T ss_pred eecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--hhccccCChHHHHHHHHHHHHHHHHHHH
Confidence 34444444444433 224456777778888888888888888888775 333 367788888
Q ss_pred HhcccCchHHHHHHHHHHHhhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHhhhhCCH
Q 007519 442 ACSHAGLVSRGWELFNAMFDVYKIQP-GPEHYVSMINLLGRAGKIKEAEEFVLRLP-FEP-DHRIWGALLGACGFCEGNA 518 (600)
Q Consensus 442 ~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~g~~ 518 (600)
++...|++++|...++++.+. .| +...+..++.+|...|++++|...|++.. ..| +...+..+...+. ..|+.
T Consensus 205 ~~~~~g~~~~A~~~~~~al~~---~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~-~~~~~ 280 (336)
T 1p5q_A 205 CHLKLQAFSAAIESCNKALEL---DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQ-RIRRQ 280 (336)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHH-HHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HHHHH
Confidence 888999999999999998865 45 57788889999999999999999998864 445 4556666777777 88888
Q ss_pred HHH-HHHHHHHHh
Q 007519 519 EIA-EHAAKRLLE 530 (600)
Q Consensus 519 ~~a-~~~~~~~~~ 530 (600)
++| ...++++++
T Consensus 281 ~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 281 LAREKKLYANMFE 293 (336)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 887 456676665
No 178
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.17 E-value=2.1e-05 Score=62.42 Aligned_cols=86 Identities=15% Similarity=0.123 Sum_probs=38.9
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCh----hHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCCC----cchHHHHH
Q 007519 405 VMGFSHHGLANETLKVFESMLESGTHPNS----VTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPG----PEHYVSMI 476 (600)
Q Consensus 405 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~ 476 (600)
...+...|++++|...|+++.+. .|+. ..+..+..++...|++++|...++++.+. .|+ ...+..++
T Consensus 9 a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~~~~~la 83 (129)
T 2xev_A 9 AFDALKNGKYDDASQLFLSFLEL--YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSR---YPTHDKAAGGLLKLG 83 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTSTTHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHH--CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHH---CCCCcccHHHHHHHH
Confidence 34444455555555555554443 1221 23334444444555555555555554443 221 23344444
Q ss_pred HHHhhcCChHHHHHHHHhC
Q 007519 477 NLLGRAGKIKEAEEFVLRL 495 (600)
Q Consensus 477 ~~~~~~g~~~~A~~~~~~~ 495 (600)
.+|...|++++|.+.++++
T Consensus 84 ~~~~~~g~~~~A~~~~~~~ 102 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQV 102 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHH
Confidence 5555555555555554443
No 179
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.15 E-value=5.7e-06 Score=67.00 Aligned_cols=94 Identities=16% Similarity=-0.021 Sum_probs=78.3
Q ss_pred cchHHHHHHHHhhcCChHHHHHHHHhCC-CCCC-------------HHHHHHHHHHHhhhhCCHHHHHHHHHHHHhh---
Q 007519 469 PEHYVSMINLLGRAGKIKEAEEFVLRLP-FEPD-------------HRIWGALLGACGFCEGNAEIAEHAAKRLLEL--- 531 (600)
Q Consensus 469 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-------------~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~--- 531 (600)
...+...+..+.+.|++++|.+.|++.. ..|+ ...|.....++. ..|++++|+..+++++++
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~-~Lgr~~eAl~~~~kAL~l~n~ 89 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALA-GLRSFDEALHSADKALHYFNR 89 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhhhc
Confidence 3456667888899999999999998863 3333 237888888888 999999999999999999
Q ss_pred ----CCCCCCcH----HHHhHHHHhhCCcHHHHHHHHHHh
Q 007519 532 ----DPLNAPAH----VVLCNIYAASGRHVEEHKLRMDMG 563 (600)
Q Consensus 532 ----~p~~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~ 563 (600)
+|+++..| ...+.++...|++++|+..++...
T Consensus 90 ~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAl 129 (159)
T 2hr2_A 90 RGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVV 129 (159)
T ss_dssp HCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHH
Confidence 99999999 999999999999999999665543
No 180
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.15 E-value=2.4e-06 Score=66.83 Aligned_cols=92 Identities=11% Similarity=0.029 Sum_probs=59.5
Q ss_pred cCchHHHHHHHHHHHhhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHhhhhCCHHHHH
Q 007519 446 AGLVSRGWELFNAMFDVYKIQP-GPEHYVSMINLLGRAGKIKEAEEFVLRLP-FEP-DHRIWGALLGACGFCEGNAEIAE 522 (600)
Q Consensus 446 ~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~g~~~~a~ 522 (600)
.|++++|+..|+++.+...-.| +...+..++.+|...|++++|.+.+++.. ..| +...+..+..++. ..|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~-~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLY-NLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHH-HcCCHHHHH
Confidence 4667777777777764210024 35667777777778888888887777754 334 3455666666666 788888888
Q ss_pred HHHHHHHhhCCCCCCc
Q 007519 523 HAAKRLLELDPLNAPA 538 (600)
Q Consensus 523 ~~~~~~~~~~p~~~~~ 538 (600)
..++++++..|+++..
T Consensus 82 ~~~~~al~~~p~~~~~ 97 (117)
T 3k9i_A 82 ELLLKIIAETSDDETI 97 (117)
T ss_dssp HHHHHHHHHHCCCHHH
T ss_pred HHHHHHHHhCCCcHHH
Confidence 8888888887766544
No 181
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.15 E-value=1.5e-06 Score=72.69 Aligned_cols=77 Identities=21% Similarity=0.073 Sum_probs=57.6
Q ss_pred cchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCC-CcHHHHhHH
Q 007519 469 PEHYVSMINLLGRAGKIKEAEEFVLRLP-FEP-DHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNA-PAHVVLCNI 545 (600)
Q Consensus 469 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~-~~~~~l~~~ 545 (600)
...|..++.+|.+.|++++|...+++.. ..| +...|..+..++. ..|++++|+..++++++++|+++ .+...+..+
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~-~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~ 141 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARI-AAWKLDEAEEDLKLLLRNHPAAASVVAREMKIV 141 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHH-HHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 4577788888888888888888887764 344 4567777777777 88999999999999999998766 444444444
Q ss_pred H
Q 007519 546 Y 546 (600)
Q Consensus 546 ~ 546 (600)
.
T Consensus 142 ~ 142 (162)
T 3rkv_A 142 T 142 (162)
T ss_dssp H
T ss_pred H
Confidence 3
No 182
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.13 E-value=6.6e-06 Score=78.07 Aligned_cols=145 Identities=8% Similarity=-0.054 Sum_probs=79.2
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCCCcchHHHHHH
Q 007519 398 LVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMIN 477 (600)
Q Consensus 398 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 477 (600)
...+..+...+...|++++|+..|++.... .|+... +...|+.+++...+. ...|..++.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~-----------~~~~~nla~ 238 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK-----------NPCHLNIAA 238 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH-----------THHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH-----------HHHHHHHHH
Confidence 345666667777788888888888887763 454332 223344444332221 126788888
Q ss_pred HHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCCCcHHHHhHHHH-hhCCcHH
Q 007519 478 LLGRAGKIKEAEEFVLRLP-FEP-DHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYA-ASGRHVE 554 (600)
Q Consensus 478 ~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~-~~g~~~~ 554 (600)
+|.+.|++++|...+++.. ..| +...+..+..++. ..|++++|+..++++++++|+++.++..+..+.. ..+..++
T Consensus 239 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~-~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~ 317 (338)
T 2if4_A 239 CLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKA-ELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQK 317 (338)
T ss_dssp HHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-TTTCHHHHHHHHHHTTC-------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999888864 444 5667788888888 8999999999999999999988888888887744 4466666
Q ss_pred HHHHHHHHh
Q 007519 555 EHKLRMDMG 563 (600)
Q Consensus 555 A~~~~~~~~ 563 (600)
+..+++.+-
T Consensus 318 a~~~~~~~l 326 (338)
T 2if4_A 318 QKEMYKGIF 326 (338)
T ss_dssp ---------
T ss_pred HHHHHHHhh
Confidence 666665554
No 183
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.13 E-value=1.5e-05 Score=78.73 Aligned_cols=161 Identities=8% Similarity=-0.090 Sum_probs=110.2
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCCh----hHHHHHHHHhcccCchHHHHHHHHHHHhhc---CCCC-Ccc
Q 007519 400 SWNSMVMGFSHHGLANETLKVFESMLESG-THPNS----VTFLGILSACSHAGLVSRGWELFNAMFDVY---KIQP-GPE 470 (600)
Q Consensus 400 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-~~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~p-~~~ 470 (600)
.+..++..|...|++++|.+.+..+...- ..++. ...+.+-..+...|+.+.+..+++...... +..+ -..
T Consensus 57 al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 136 (434)
T 4b4t_Q 57 SILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHS 136 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHH
Confidence 35667788888888888888888766531 11221 122333344566788899988888766431 2222 245
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHhCC-------CCCC-HHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCC--C-----
Q 007519 471 HYVSMINLLGRAGKIKEAEEFVLRLP-------FEPD-HRIWGALLGACGFCEGNAEIAEHAAKRLLELDPL--N----- 535 (600)
Q Consensus 471 ~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~p~-~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~--~----- 535 (600)
++..|+..|...|++++|..+++++. ..|. ..++...+..|. ..|++++|...+++++...+. +
T Consensus 137 ~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 215 (434)
T 4b4t_Q 137 LSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYH-KLRNLAKSKASLTAARTAANSIYCPTQTV 215 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHH-HhCcHHHHHHHHHHHHHHhhcCCCchHHH
Confidence 67788999999999999999887752 1222 346677777888 999999999999998875432 2
Q ss_pred CCcHHHHhHHHHhhCCcHHHHHHHHH
Q 007519 536 APAHVVLCNIYAASGRHVEEHKLRMD 561 (600)
Q Consensus 536 ~~~~~~l~~~~~~~g~~~~A~~~~~~ 561 (600)
...+..++..+...|++++|...+..
T Consensus 216 ~~~~~~~g~~~~~~~~y~~A~~~~~~ 241 (434)
T 4b4t_Q 216 AELDLMSGILHCEDKDYKTAFSYFFE 241 (434)
T ss_dssp HHHHHHHHHHTTSSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 14456777788888999999884433
No 184
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.12 E-value=6.2e-06 Score=65.64 Aligned_cols=93 Identities=10% Similarity=-0.044 Sum_probs=48.5
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCC-------CCcHHH
Q 007519 471 HYVSMINLLGRAGKIKEAEEFVLRLP--FEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLN-------APAHVV 541 (600)
Q Consensus 471 ~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~-------~~~~~~ 541 (600)
.+..++..+...|++++|...+++.. .+.+...+..+...+. ..|++++|+..++++++..|++ +.++..
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYF-EKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHH-HhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 34444555555555555555555432 1223344444444454 5566666666666665555433 445555
Q ss_pred HhHHHHhhCCcHHHHHHHHHHhh
Q 007519 542 LCNIYAASGRHVEEHKLRMDMGL 564 (600)
Q Consensus 542 l~~~~~~~g~~~~A~~~~~~~~~ 564 (600)
++.++...|++++|.+.++...+
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHH
Confidence 56666666666666665544433
No 185
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.12 E-value=8.4e-06 Score=64.84 Aligned_cols=105 Identities=8% Similarity=0.002 Sum_probs=57.0
Q ss_pred HHHHHhcccCchHHHHHHHHHHHhhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHhCC-C----CCC----HHHHHHH
Q 007519 438 GILSACSHAGLVSRGWELFNAMFDVYKIQP-GPEHYVSMINLLGRAGKIKEAEEFVLRLP-F----EPD----HRIWGAL 507 (600)
Q Consensus 438 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~----~p~----~~~~~~l 507 (600)
.+...+...|++++|...++++.+. .| +...+..++..|...|++++|...+++.. . .++ ...+..+
T Consensus 9 ~l~~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l 85 (131)
T 1elr_A 9 ELGNDAYKKKDFDTALKHYDKAKEL---DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHhc---CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHH
Confidence 3344444445555555555554432 22 34444555555555555555555554432 1 111 4455556
Q ss_pred HHHHhhhhCCHHHHHHHHHHHHhhCCCCCCcHHHHhHHHH
Q 007519 508 LGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYA 547 (600)
Q Consensus 508 ~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 547 (600)
...+. ..|++++|+..++++++..| ++.....+..+..
T Consensus 86 a~~~~-~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~ 123 (131)
T 1elr_A 86 GNSYF-KEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEK 123 (131)
T ss_dssp HHHHH-HTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHH
T ss_pred HHHHH-HhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHH
Confidence 66666 77777777777777777777 5555555555443
No 186
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.11 E-value=5.7e-06 Score=71.78 Aligned_cols=145 Identities=8% Similarity=-0.026 Sum_probs=81.7
Q ss_pred HHHhcccchhhhHHHHHHHhhhcCCCchhHHHHHHHHHHhcCChHHHHHHHhcCC---CCCh----------------hh
Q 007519 340 GAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMV---SRDL----------------VS 400 (600)
Q Consensus 340 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~----------------~~ 400 (600)
......++++.+.+.+....+... .....+..+...+...|++++|...|++.. +.+. ..
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (198)
T 2fbn_A 12 SGRENLYFQGAKKSIYDYTDEEKV-QSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISC 90 (198)
T ss_dssp ----------CCCSGGGCCHHHHH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHH
T ss_pred hhhhhhhhccccCchhhCCHHHHH-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHH
Confidence 344556677777777663322211 134456677888999999999999999875 2232 45
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCC-CcchHHHHHHHH
Q 007519 401 WNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQP-GPEHYVSMINLL 479 (600)
Q Consensus 401 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~ 479 (600)
|..+..++...|++++|+..+++..... +.+...+..+..++...|++++|...|+++.+. .| +...+..+..++
T Consensus 91 ~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~ 166 (198)
T 2fbn_A 91 NLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASL---NPNNLDIRNSYELCV 166 (198)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH---CCCcHHHHHHHHHHH
Confidence 5666666666677777777666666542 334455555566666666666666666666543 34 344555555555
Q ss_pred hhcCChHHHH
Q 007519 480 GRAGKIKEAE 489 (600)
Q Consensus 480 ~~~g~~~~A~ 489 (600)
...|+.+++.
T Consensus 167 ~~~~~~~~~~ 176 (198)
T 2fbn_A 167 NKLKEARKKD 176 (198)
T ss_dssp HHHHHHHC--
T ss_pred HHHHHHHHHH
Confidence 5555444444
No 187
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.10 E-value=6e-05 Score=74.46 Aligned_cols=153 Identities=5% Similarity=-0.088 Sum_probs=73.5
Q ss_pred HHHHHhcCChHHHHHHHhhCCC--C---C---------------hhhHHHHHHHHHhCCChhHHHHHHHHHHHCC-CCCC
Q 007519 273 IDGYLSVGQVSNAYYLFHNMPD--R---D---------------AVAWTAMISGLVQNELFVEATYLFMEMRAHG-VPPL 331 (600)
Q Consensus 273 ~~~~~~~~~~~~A~~~~~~~~~--~---~---------------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~ 331 (600)
...+.+.|++++|++.|..+.+ + + ..++..+...|...|++++|.+.+..+.+.- ..++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 4456667777777777766533 1 0 0125566667777777777777776654421 1111
Q ss_pred hhH---HH-HHHHHHhcccchhhhHHHHHHHhhh----cCCC-chhHHHHHHHHHHhcCChHHHHHHHhcCC----C---
Q 007519 332 NAT---FS-VLFGAAGATANIDLGRQIHCVLMKT----ESES-DLILENCLISMYAKCGVIDNAYNIFSNMV----S--- 395 (600)
Q Consensus 332 ~~~---~~-~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~--- 395 (600)
..+ .. .+-..+...|+.+.+..++...... +..+ -..++..+...|...|++++|..+++++. .
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 111 11 1122233445556665555543321 1111 12334445555555555555555554432 0
Q ss_pred --CChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 007519 396 --RDLVSWNSMVMGFSHHGLANETLKVFESML 425 (600)
Q Consensus 396 --~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 425 (600)
....++..++..|...|++++|..++++..
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 202 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAAR 202 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 012344444455555555555555555443
No 188
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.09 E-value=7e-06 Score=68.48 Aligned_cols=94 Identities=14% Similarity=-0.045 Sum_probs=70.6
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHhCC-C------------------CCC-HHHHHHHHHHHhhhhCCHHHHHHHHHHHHh
Q 007519 471 HYVSMINLLGRAGKIKEAEEFVLRLP-F------------------EPD-HRIWGALLGACGFCEGNAEIAEHAAKRLLE 530 (600)
Q Consensus 471 ~~~~l~~~~~~~g~~~~A~~~~~~~~-~------------------~p~-~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~ 530 (600)
.+...+..+.+.|++++|.+.|++.. . .|. ...+..+..++. ..|++++|+..++++++
T Consensus 13 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~-~~~~~~~A~~~~~~al~ 91 (162)
T 3rkv_A 13 ALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYL-NIGDLHEAEETSSEVLK 91 (162)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHh
Confidence 34445555555555555555554432 1 222 346677777777 99999999999999999
Q ss_pred hCCCCCCcHHHHhHHHHhhCCcHHHHHHHHHHhhc
Q 007519 531 LDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLK 565 (600)
Q Consensus 531 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 565 (600)
++|+++.+|..++.+|...|++++|...++...+.
T Consensus 92 ~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 92 REETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 99999999999999999999999999977665543
No 189
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.07 E-value=6.6e-06 Score=82.03 Aligned_cols=115 Identities=10% Similarity=0.096 Sum_probs=57.6
Q ss_pred HHHHhcCChHHHHHHHhcCC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccCchHH
Q 007519 375 SMYAKCGVIDNAYNIFSNMV---SRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSR 451 (600)
Q Consensus 375 ~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~ 451 (600)
..+.+.|++++|...|++.. +.+...|..+..++.+.|++++|++.+++..+.. +.+...+..+..++...|++++
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~e 92 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRA 92 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHH
Confidence 34455566666666665543 3345555555556666666666666666555531 2233445555555555566666
Q ss_pred HHHHHHHHHhhcCCCC-CcchHHHHHHH--HhhcCChHHHHHHHH
Q 007519 452 GWELFNAMFDVYKIQP-GPEHYVSMINL--LGRAGKIKEAEEFVL 493 (600)
Q Consensus 452 a~~~~~~~~~~~~~~p-~~~~~~~l~~~--~~~~g~~~~A~~~~~ 493 (600)
|.+.++++.+. .| +...+..+..+ +.+.|++++|.+.++
T Consensus 93 A~~~~~~al~~---~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 93 ALRDYETVVKV---KPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHH---STTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 66666555543 23 23334444433 455555555555555
No 190
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.06 E-value=2.3e-06 Score=66.89 Aligned_cols=83 Identities=14% Similarity=0.041 Sum_probs=66.9
Q ss_pred hcCChHHHHHHHHhCC-C---CCC-HHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCCCcHHHHhHHHHhhCCcHHH
Q 007519 481 RAGKIKEAEEFVLRLP-F---EPD-HRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEE 555 (600)
Q Consensus 481 ~~g~~~~A~~~~~~~~-~---~p~-~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 555 (600)
..|++++|+..+++.. . .|+ ...+..+...+. ..|++++|+..++++++..|+++.++..++.++...|++++|
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFR-TLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHH
Confidence 4688899999998864 4 354 346677777788 999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhh
Q 007519 556 HKLRMDMGL 564 (600)
Q Consensus 556 ~~~~~~~~~ 564 (600)
...++...+
T Consensus 81 ~~~~~~al~ 89 (117)
T 3k9i_A 81 VELLLKIIA 89 (117)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 996665543
No 191
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.05 E-value=7e-06 Score=68.20 Aligned_cols=91 Identities=19% Similarity=0.096 Sum_probs=48.2
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHhCC----CCCC----HHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCC------CC
Q 007519 471 HYVSMINLLGRAGKIKEAEEFVLRLP----FEPD----HRIWGALLGACGFCEGNAEIAEHAAKRLLELDPL------NA 536 (600)
Q Consensus 471 ~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~----~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~------~~ 536 (600)
++..++..+...|++++|.+.+++.. ..++ ...+..+...+. ..|++++|+..++++++..+. ..
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 129 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYT-LLQDYEKAIDYHLKHLAIAQELKDRIGEG 129 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHHHHHccchHhHH
Confidence 34444555555555555555544431 0011 223444444555 666666666666666654221 12
Q ss_pred CcHHHHhHHHHhhCCcHHHHHHHHHH
Q 007519 537 PAHVVLCNIYAASGRHVEEHKLRMDM 562 (600)
Q Consensus 537 ~~~~~l~~~~~~~g~~~~A~~~~~~~ 562 (600)
.++..++.++...|++++|.+.++..
T Consensus 130 ~~~~~la~~~~~~g~~~~A~~~~~~a 155 (164)
T 3ro3_A 130 RACWSLGNAYTALGNHDQAMHFAEKH 155 (164)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 45666677777777777777755443
No 192
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.04 E-value=1.3e-05 Score=76.04 Aligned_cols=150 Identities=11% Similarity=0.044 Sum_probs=81.9
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhcCC--CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhc
Q 007519 367 LILENCLISMYAKCGVIDNAYNIFSNMV--SRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACS 444 (600)
Q Consensus 367 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~ 444 (600)
...+..+...+.+.|++++|...|++.. .|+.. .+...|+.+++...+. ...|..+..++.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~-------~~~~~~~~~~~~~~l~----------~~~~~nla~~~~ 241 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDF-------MFQLYGKYQDMALAVK----------NPCHLNIAACLI 241 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHH-------HHTCCHHHHHHHHHHH----------THHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccch-------hhhhcccHHHHHHHHH----------HHHHHHHHHHHH
Confidence 4456677888899999999999999876 23222 1222333344333221 136777888899
Q ss_pred ccCchHHHHHHHHHHHhhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHhCC-CCCCHH-HHHHHHHHHhhhhCCHHHH
Q 007519 445 HAGLVSRGWELFNAMFDVYKIQP-GPEHYVSMINLLGRAGKIKEAEEFVLRLP-FEPDHR-IWGALLGACGFCEGNAEIA 521 (600)
Q Consensus 445 ~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~-~~~~l~~~~~~~~g~~~~a 521 (600)
+.|++++|...++++.+. .| +...+..++.+|...|++++|.+.|++.. ..|+.. .+..+........+..+.+
T Consensus 242 ~~g~~~~A~~~~~~al~~---~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 242 KLKRYDEAIGHCNIVLTE---EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp TTTCCHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999865 56 57789999999999999999999999975 666544 3444443323245677888
Q ss_pred HHHHHHHHhhCCCCC
Q 007519 522 EHAAKRLLELDPLNA 536 (600)
Q Consensus 522 ~~~~~~~~~~~p~~~ 536 (600)
...|+++++..|+++
T Consensus 319 ~~~~~~~l~~~p~~~ 333 (338)
T 2if4_A 319 KEMYKGIFKGKDEGG 333 (338)
T ss_dssp ---------------
T ss_pred HHHHHHhhCCCCCCC
Confidence 899999999988654
No 193
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.02 E-value=1.7e-05 Score=65.81 Aligned_cols=133 Identities=16% Similarity=0.119 Sum_probs=81.6
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CCh----hHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCCC----cc
Q 007519 400 SWNSMVMGFSHHGLANETLKVFESMLESGTH-PNS----VTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPG----PE 470 (600)
Q Consensus 400 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~-p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~ 470 (600)
++..+...+...|++++|+..+++..+.... ++. .++..+...+...|++++|.+.++++.+...-.++ ..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 3455555666666666666666665543100 111 24555666667777777777777766543111111 44
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHhCC----CCCC----HHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCC
Q 007519 471 HYVSMINLLGRAGKIKEAEEFVLRLP----FEPD----HRIWGALLGACGFCEGNAEIAEHAAKRLLELDP 533 (600)
Q Consensus 471 ~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~----~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p 533 (600)
.+..++..+...|++++|.+.+++.. ..++ ...+..+...+. ..|++++|+..+++++++..
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~a~~~~~ 160 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYT-ALGNHDQAMHFAEKHLEISR 160 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHH-HccCHHHHHHHHHHHHHHHH
Confidence 56677788888888888888776642 1111 234555666666 88999999999998887543
No 194
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.01 E-value=7.4e-06 Score=63.07 Aligned_cols=91 Identities=16% Similarity=-0.058 Sum_probs=73.2
Q ss_pred CcchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCC------CCcH
Q 007519 468 GPEHYVSMINLLGRAGKIKEAEEFVLRLP-FEP-DHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLN------APAH 539 (600)
Q Consensus 468 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~ 539 (600)
+...+..++..+...|++++|.+.+++.. ..| +...+..+..++. ..|++++|+..+++++++.|++ +..+
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 81 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALI-KLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQ 81 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHhCCCccHHHHHHHHH
Confidence 34567778888889999999999888864 344 5667777777888 9999999999999999999987 6777
Q ss_pred HHHhHHHHhhCCcHHHHHHH
Q 007519 540 VVLCNIYAASGRHVEEHKLR 559 (600)
Q Consensus 540 ~~l~~~~~~~g~~~~A~~~~ 559 (600)
..++.++...|++++|.+.+
T Consensus 82 ~~~~~~~~~~~~~~~a~~~~ 101 (111)
T 2l6j_A 82 YRLELAQGAVGSVQIPVVEV 101 (111)
T ss_dssp HHHHHHHHHHHCCCCCSSSS
T ss_pred HHHHHHHHHHHhHhhhHhHH
Confidence 88888888888877776544
No 195
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.95 E-value=3.1e-05 Score=76.67 Aligned_cols=123 Identities=9% Similarity=-0.017 Sum_probs=95.9
Q ss_pred hcccCchHHHHHHHHHHHhhcC--CCCC----cchHHHHHHHHhhcCChHHHHHHHHhCC---------CCCCH-HHHHH
Q 007519 443 CSHAGLVSRGWELFNAMFDVYK--IQPG----PEHYVSMINLLGRAGKIKEAEEFVLRLP---------FEPDH-RIWGA 506 (600)
Q Consensus 443 ~~~~g~~~~a~~~~~~~~~~~~--~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~---------~~p~~-~~~~~ 506 (600)
+...|++++|..++++..+... +.|+ ..+++.|+.+|...|++++|+.++++.. ..|+. .+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 4567889999888887765422 2222 5678899999999999999999887752 34443 46788
Q ss_pred HHHHHhhhhCCHHHHHHHHHHHHh-----hCCCCCCc---HHHHhHHHHhhCCcHHHHHHHHHHhhcC
Q 007519 507 LLGACGFCEGNAEIAEHAAKRLLE-----LDPLNAPA---HVVLCNIYAASGRHVEEHKLRMDMGLKG 566 (600)
Q Consensus 507 l~~~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 566 (600)
+...+. .+|++++|+.+++++++ +.|++|.+ ...+..++...|.+++|..++..+++..
T Consensus 399 La~~~~-~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 399 AGLTNW-HAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHH-HTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-HCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888 99999999999999988 67877654 4577888889999999999888887644
No 196
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.91 E-value=3.1e-05 Score=56.91 Aligned_cols=81 Identities=28% Similarity=0.339 Sum_probs=64.3
Q ss_pred cchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCCCcHHHHhHHH
Q 007519 469 PEHYVSMINLLGRAGKIKEAEEFVLRLP-FEP-DHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIY 546 (600)
Q Consensus 469 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 546 (600)
...+..++..+...|++++|.+.+++.. ..| +...+..+...+. ..|++++|+..++++++++|+++..+..++.++
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 87 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY-KQGDYDEAIEYYQKALELDPNNAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-HHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 4567777888888888888888887753 333 4566777777777 899999999999999999998888888888888
Q ss_pred HhhC
Q 007519 547 AASG 550 (600)
Q Consensus 547 ~~~g 550 (600)
...|
T Consensus 88 ~~~g 91 (91)
T 1na3_A 88 QKQG 91 (91)
T ss_dssp HHHC
T ss_pred HhcC
Confidence 7654
No 197
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.82 E-value=7.4e-05 Score=56.13 Aligned_cols=61 Identities=20% Similarity=0.015 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCCCcHHHHhHHHHhhCCcHHHHHHHHHH
Q 007519 501 HRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDM 562 (600)
Q Consensus 501 ~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 562 (600)
...+..+...+. ..|++++|+..++++++++|+++.++..++.+|...|++++|.+.++..
T Consensus 7 ~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 67 (100)
T 3ma5_A 7 PFTRYALAQEHL-KHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQG 67 (100)
T ss_dssp HHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 444555555555 6666666666666666666666666666666666666666666644433
No 198
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.77 E-value=0.00019 Score=71.21 Aligned_cols=125 Identities=11% Similarity=0.105 Sum_probs=86.5
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhcCC---CCC---------------hhhHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 007519 367 LILENCLISMYAKCGVIDNAYNIFSNMV---SRD---------------LVSWNSMVMGFSHHGLANETLKVFESMLESG 428 (600)
Q Consensus 367 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~---------------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 428 (600)
...+..+...+.+.|++++|...|++.. +.+ ...|..+..+|.+.|++++|+..+++..+..
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 347 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 347 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 3455667777888888888888888765 222 4667777777888888888888888877753
Q ss_pred CCCChhHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCC-CcchHHHHHHHHhhcCChHHHHH-HHHhC
Q 007519 429 THPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQP-GPEHYVSMINLLGRAGKIKEAEE-FVLRL 495 (600)
Q Consensus 429 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~-~~~~~ 495 (600)
+.+...+..+..+|...|++++|...|+++.+ +.| +...+..+..++.+.|+.++|.+ .+.+|
T Consensus 348 -p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~---l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~ 412 (457)
T 1kt0_A 348 -SANEKGLYRRGEAQLLMNEFESAKGDFEKVLE---VNPQNKAARLQISMCQKKAKEHNERDRRIYANM 412 (457)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT---TC----CHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred -CccHHHHHHHHHHHHHccCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677777777788888888888887764 355 46677777777777777776653 34444
No 199
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.70 E-value=3.7e-05 Score=62.09 Aligned_cols=108 Identities=11% Similarity=0.045 Sum_probs=59.9
Q ss_pred CchHHHHHHHHHHHhhcCCCC-CcchHHHHHHHHhhcCCh----------HHHHHHHHhCC-CCC-CHHHHHHHHHHHhh
Q 007519 447 GLVSRGWELFNAMFDVYKIQP-GPEHYVSMINLLGRAGKI----------KEAEEFVLRLP-FEP-DHRIWGALLGACGF 513 (600)
Q Consensus 447 g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~----------~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~ 513 (600)
+.+++|.+.+++..+. .| +...|..++.++...|++ ++|+..|++.. +.| +...|..+..++.
T Consensus 16 ~~feeA~~~~~~Ai~l---~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~- 91 (158)
T 1zu2_A 16 LLFEQIRQDAENTYKS---NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYT- 91 (158)
T ss_dssp HHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-
T ss_pred hHHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHH-
Confidence 4455555555555533 34 344555555555554432 35555555543 334 3345555555554
Q ss_pred hh-----------CCHHHHHHHHHHHHhhCCCCCCcHHHHhHHHHhhCCcHHHHHHHHHHhhc
Q 007519 514 CE-----------GNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLK 565 (600)
Q Consensus 514 ~~-----------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 565 (600)
.. |++++|+..|+++++++|++. .|...+ ...++|.++.-.+...
T Consensus 92 ~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~-~y~~al------~~~~ka~el~~~~~~~ 147 (158)
T 1zu2_A 92 SFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNT-HYLKSL------EMTAKAPQLHAEAYKQ 147 (158)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCH-HHHHHH------HHHHTHHHHHHHHHHS
T ss_pred HhcccCcchhhhhccHHHHHHHHHHHHHhCCCCH-HHHHHH------HHHHhCHhccCccccc
Confidence 43 589999999999999999653 222222 2335555555554444
No 200
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.68 E-value=7e-05 Score=57.98 Aligned_cols=80 Identities=15% Similarity=0.042 Sum_probs=59.8
Q ss_pred HHHHHHHHHHhhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHhhhhCCHHHHHHHHHH
Q 007519 451 RGWELFNAMFDVYKIQP-GPEHYVSMINLLGRAGKIKEAEEFVLRLP-FEP-DHRIWGALLGACGFCEGNAEIAEHAAKR 527 (600)
Q Consensus 451 ~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~g~~~~a~~~~~~ 527 (600)
.|.+.++++.+ ..| +...+..++..|...|++++|.+.+++.. ..| +...|..+..++. ..|++++|+..+++
T Consensus 3 ~a~~~~~~al~---~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~g~~~~A~~~~~~ 78 (115)
T 2kat_A 3 AITERLEAMLA---QGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQ-GQGDRAGARQAWES 78 (115)
T ss_dssp CHHHHHHHHHT---TTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHH---hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHH-HcCCHHHHHHHHHH
Confidence 56677777764 345 56778888888888888888888887764 334 4566777777777 88888888888888
Q ss_pred HHhhCCC
Q 007519 528 LLELDPL 534 (600)
Q Consensus 528 ~~~~~p~ 534 (600)
++++.|.
T Consensus 79 al~~~~~ 85 (115)
T 2kat_A 79 GLAAAQS 85 (115)
T ss_dssp HHHHHHH
T ss_pred HHHhccc
Confidence 8887773
No 201
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.67 E-value=0.0002 Score=57.50 Aligned_cols=109 Identities=6% Similarity=-0.050 Sum_probs=48.6
Q ss_pred ChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCCCcchHHHHHHHHhh----cCChHHH
Q 007519 413 LANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGR----AGKIKEA 488 (600)
Q Consensus 413 ~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A 488 (600)
++++|++.|++..+.| .|+.. +...|...+.+++|.++|++..+. -++..+..|...|.. .+++++|
T Consensus 10 d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 10 DLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred CHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCCCCCccHHHH
Confidence 3455555555555544 22222 334444444555555555555442 233444444444444 4444555
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHhhh----hCCHHHHHHHHHHHHhh
Q 007519 489 EEFVLRLPFEPDHRIWGALLGACGFC----EGNAEIAEHAAKRLLEL 531 (600)
Q Consensus 489 ~~~~~~~~~~p~~~~~~~l~~~~~~~----~g~~~~a~~~~~~~~~~ 531 (600)
.+++++.-..-+......+...+. . .+|.++|+..++++.+.
T Consensus 81 ~~~~~~Aa~~g~~~a~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 81 AQYYSKACGLNDQDGCLILGYKQY-AGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH-HTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHH-CCCCCCcCHHHHHHHHHHHHHC
Confidence 544444332233333344444333 3 34444444444444443
No 202
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.62 E-value=3.9e-05 Score=61.98 Aligned_cols=86 Identities=13% Similarity=-0.019 Sum_probs=69.5
Q ss_pred HhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHhhhhCC----------HHHHHHHHHHHHhhCCCCCCcHHHHhHHH
Q 007519 479 LGRAGKIKEAEEFVLRLP-FEP-DHRIWGALLGACGFCEGN----------AEIAEHAAKRLLELDPLNAPAHVVLCNIY 546 (600)
Q Consensus 479 ~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~g~----------~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 546 (600)
..+.+.+++|.+.+++.. ..| +...|..+..++. ..++ +++|+..|+++++++|+++.+|..++.+|
T Consensus 12 ~~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~-~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay 90 (158)
T 1zu2_A 12 FDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLL-ELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAY 90 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHH
Confidence 346677899999888864 445 5677777777776 6665 46999999999999999999999999999
Q ss_pred HhhC-----------CcHHHHHHHHHHhhc
Q 007519 547 AASG-----------RHVEEHKLRMDMGLK 565 (600)
Q Consensus 547 ~~~g-----------~~~~A~~~~~~~~~~ 565 (600)
...| ++++|.+.++...+.
T Consensus 91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l 120 (158)
T 1zu2_A 91 TSFAFLTPDETEAKHNFDLATQFFQQAVDE 120 (158)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcccCcchhhhhccHHHHHHHHHHHHHh
Confidence 9875 899999977665544
No 203
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.61 E-value=0.00022 Score=52.29 Aligned_cols=69 Identities=14% Similarity=-0.028 Sum_probs=52.8
Q ss_pred CCHHHHHHHHHHHhhhhCC---HHHHHHHHHHHHhhCCCCCCcHHHHhHHHHhhCCcHHHHHHHHHHhhcCCc
Q 007519 499 PDHRIWGALLGACGFCEGN---AEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVR 568 (600)
Q Consensus 499 p~~~~~~~l~~~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 568 (600)
+++..+..+..++. ..++ .++|..+++++++++|+++.+...++..+.+.|++++|+..|+.+.+....
T Consensus 4 ~~~~~~~~~a~al~-~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 4 VTATQLAAKATTLY-YLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCHHHHHHHHHHHH-HTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCHHHHHHHHHHHH-HhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 45556666666654 3333 688888888888888888888888888888888888888888888776554
No 204
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.60 E-value=0.00012 Score=56.64 Aligned_cols=76 Identities=14% Similarity=0.092 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHcCCCCChhHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHh
Q 007519 416 ETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQP-GPEHYVSMINLLGRAGKIKEAEEFVLR 494 (600)
Q Consensus 416 ~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 494 (600)
+|+..|++..+.. +.+...+..+..++...|++++|...++++.+. .| +...+..++.+|...|++++|...+++
T Consensus 3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 78 (115)
T 2kat_A 3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDF---DPTYSVAWKWLGKTLQGQGDRAGARQAWES 78 (115)
T ss_dssp CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4555666655431 233445555556666666666666666666643 33 345566666666666666666666655
Q ss_pred C
Q 007519 495 L 495 (600)
Q Consensus 495 ~ 495 (600)
.
T Consensus 79 a 79 (115)
T 2kat_A 79 G 79 (115)
T ss_dssp H
T ss_pred H
Confidence 4
No 205
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.59 E-value=6.5e-05 Score=57.59 Aligned_cols=94 Identities=12% Similarity=0.116 Sum_probs=60.4
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCCC-------cc
Q 007519 398 LVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPG-------PE 470 (600)
Q Consensus 398 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-------~~ 470 (600)
...|..+...+...|++++|+..|++..+.. +.+...+..+..++...|++++|.+.++++.+ ..|+ ..
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~~~ 79 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLR---YTSTAEHVAIRSK 79 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT---SCSSTTSHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH---hCCCccHHHHHHH
Confidence 4456666777777777777777777777642 33456666666777777777777777777764 3453 34
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHhC
Q 007519 471 HYVSMINLLGRAGKIKEAEEFVLRL 495 (600)
Q Consensus 471 ~~~~l~~~~~~~g~~~~A~~~~~~~ 495 (600)
.+..++.++...|++++|.+.++++
T Consensus 80 ~~~~~~~~~~~~~~~~~a~~~~~~~ 104 (111)
T 2l6j_A 80 LQYRLELAQGAVGSVQIPVVEVDEL 104 (111)
T ss_dssp HHHHHHHHHHHHHCCCCCSSSSSSC
T ss_pred HHHHHHHHHHHHHhHhhhHhHHHHh
Confidence 4555566666666665555555444
No 206
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.58 E-value=0.00029 Score=67.47 Aligned_cols=115 Identities=7% Similarity=-0.002 Sum_probs=56.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHhcCCC-------------------CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 007519 370 ENCLISMYAKCGVIDNAYNIFSNMVS-------------------RDLVSWNSMVMGFSHHGLANETLKVFESMLESGTH 430 (600)
Q Consensus 370 ~~~l~~~~~~~~~~~~A~~~~~~~~~-------------------~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~ 430 (600)
+..+...+.+.|++++|...|++... .+...|..+..++.+.|++++|+..+++..+.. +
T Consensus 226 ~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p 304 (370)
T 1ihg_A 226 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID-P 304 (370)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-T
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-c
Confidence 45566677777888888777765542 122344444444555555555555555544421 1
Q ss_pred CChhHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCC-CcchHHHHHHHHhhcCChHHH
Q 007519 431 PNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQP-GPEHYVSMINLLGRAGKIKEA 488 (600)
Q Consensus 431 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A 488 (600)
.+...+..+..++...|++++|.+.|+++.+. .| +...+..+..++...++.+++
T Consensus 305 ~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l---~P~~~~~~~~l~~~~~~~~~~~~a 360 (370)
T 1ihg_A 305 SNTKALYRRAQGWQGLKEYDQALADLKKAQEI---APEDKAIQAELLKVKQKIKAQKDK 360 (370)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHHHHH
Confidence 22334444444444555555555555544432 23 233344444444444444433
No 207
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.48 E-value=0.002 Score=65.38 Aligned_cols=147 Identities=12% Similarity=0.082 Sum_probs=116.0
Q ss_pred cCChHHHHHHHHHHHHcCCCCCh-hHHHHHHHHhcccCc----------hHHHHHHHHHHHhhcCCCC-CcchHHHHHHH
Q 007519 411 HGLANETLKVFESMLESGTHPNS-VTFLGILSACSHAGL----------VSRGWELFNAMFDVYKIQP-GPEHYVSMINL 478 (600)
Q Consensus 411 ~~~~~~a~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~----------~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~ 478 (600)
....++|++.++++... .|+. ..|+.--.++...|+ ++++.+.++.+.+. .| +..+|..-..+
T Consensus 42 ~~~~eeal~~~~~~l~~--nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~---~pK~y~aW~hR~w~ 116 (567)
T 1dce_A 42 GELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV---NPKSYGTWHHRCWL 116 (567)
T ss_dssp TCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh---CCCCHHHHHHHHHH
Confidence 34456889999999985 5655 445444445555565 89999999999875 56 57789888999
Q ss_pred HhhcC--ChHHHHHHHHhCC-CC-CCHHHHHHHHHHHhhhhC-CHHHHHHHHHHHHhhCCCCCCcHHHHhHHHHhh----
Q 007519 479 LGRAG--KIKEAEEFVLRLP-FE-PDHRIWGALLGACGFCEG-NAEIAEHAAKRLLELDPLNAPAHVVLCNIYAAS---- 549 (600)
Q Consensus 479 ~~~~g--~~~~A~~~~~~~~-~~-p~~~~~~~l~~~~~~~~g-~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~---- 549 (600)
+.+.| +++++++.++++. .. -+...|+.-..... ..| .++++++.++++++.+|.|..+|...+.++.+.
T Consensus 117 l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~-~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~ 195 (567)
T 1dce_A 117 LSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAA-QAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQP 195 (567)
T ss_dssp HHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCC
T ss_pred HHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHH-HcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccc
Confidence 99999 7799999999985 34 46788888888877 788 899999999999999999999999999998875
Q ss_pred ----------CCcHHHHHHHHHHh
Q 007519 550 ----------GRHVEEHKLRMDMG 563 (600)
Q Consensus 550 ----------g~~~~A~~~~~~~~ 563 (600)
+.++++.+.++...
T Consensus 196 ~~~~~~~~~~~~~~eel~~~~~ai 219 (567)
T 1dce_A 196 DSGPQGRLPENVLLKELELVQNAF 219 (567)
T ss_dssp CSSSCCSSCHHHHHHHHHHHHHHH
T ss_pred cccccccccHHHHHHHHHHHHHHH
Confidence 45677777554433
No 208
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.47 E-value=0.0017 Score=52.02 Aligned_cols=113 Identities=6% Similarity=-0.105 Sum_probs=91.1
Q ss_pred cCchHHHHHHHHHHHhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHhhh----hCCHHHH
Q 007519 446 AGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFC----EGNAEIA 521 (600)
Q Consensus 446 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~----~g~~~~a 521 (600)
.+++++|.++|++..+. + .|+ .. |...|...+.+++|.+.+++.-...+......+...+. . .+|.++|
T Consensus 8 ~~d~~~A~~~~~~aa~~-g-~~~--a~--lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~-~G~g~~~d~~~A 80 (138)
T 1klx_A 8 KKDLKKAIQYYVKACEL-N-EMF--GC--LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYE-NGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHHT-T-CTT--HH--HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HCSSSCCCHHHH
T ss_pred ccCHHHHHHHHHHHHcC-C-CHh--hh--HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHH-cCCCCCccHHHH
Confidence 45788999999998875 3 233 33 88888888889999999988754567777777777777 6 7899999
Q ss_pred HHHHHHHHhhCCCCCCcHHHHhHHHHh----hCCcHHHHHHHHHHhhcCC
Q 007519 522 EHAAKRLLELDPLNAPAHVVLCNIYAA----SGRHVEEHKLRMDMGLKGV 567 (600)
Q Consensus 522 ~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~ 567 (600)
+..++++.+. .++..+..|+.+|.. .+++++|.++++...+.|.
T Consensus 81 ~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 81 AQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 9999999876 478889999999998 8999999998887777664
No 209
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.39 E-value=0.00069 Score=67.06 Aligned_cols=131 Identities=8% Similarity=-0.074 Sum_probs=73.3
Q ss_pred HHHhcCChhHHHHHHHHHHhhhcCCCCCC----hhhHHHHHHHHHhcCChhhHHHHhcccCCCCchhHHHHHHHHHhcCC
Q 007519 206 GFAWNGFHKESLLLFIEMKGICDNGNNCN----VQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQ 281 (600)
Q Consensus 206 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~ 281 (600)
.+..+|++++|+.++++.++....-..|+ ..+++.|..+|...|++++|+.++++..
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL------------------- 378 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMV------------------- 378 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-------------------
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH-------------------
Confidence 35567889999888888876633333332 4567788888888888888887776543
Q ss_pred hHHHHHHHhhCCCC---C-hhhHHHHHHHHHhCCChhHHHHHHHHHHHC-----C-CCCChh-HHHHHHHHHhcccchhh
Q 007519 282 VSNAYYLFHNMPDR---D-AVAWTAMISGLVQNELFVEATYLFMEMRAH-----G-VPPLNA-TFSVLFGAAGATANIDL 350 (600)
Q Consensus 282 ~~~A~~~~~~~~~~---~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----g-~~p~~~-~~~~l~~~~~~~~~~~~ 350 (600)
.++.....+ + ..+++.|...|...|++++|+.++++..+. | -.|+.. +...+-.++...+...+
T Consensus 379 -----~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ 453 (490)
T 3n71_A 379 -----DGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQ 453 (490)
T ss_dssp -----HHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----HHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHH
Confidence 222222221 1 135566666666666666666666655431 2 112222 22223334444555555
Q ss_pred hHHHHHHHhh
Q 007519 351 GRQIHCVLMK 360 (600)
Q Consensus 351 a~~~~~~~~~ 360 (600)
|..++..+.+
T Consensus 454 ae~~~~~~~~ 463 (490)
T 3n71_A 454 NEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555554433
No 210
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.29 E-value=0.0057 Score=56.95 Aligned_cols=135 Identities=12% Similarity=-0.019 Sum_probs=73.4
Q ss_pred CCChhhHHHHHHHHH--hcC---ChHHHHHHHHHHHHcCCCCCh-hHHHHHHHHhcc---c-----CchHHHHHHHHHHH
Q 007519 395 SRDLVSWNSMVMGFS--HHG---LANETLKVFESMLESGTHPNS-VTFLGILSACSH---A-----GLVSRGWELFNAMF 460 (600)
Q Consensus 395 ~~~~~~~~~l~~~~~--~~~---~~~~a~~~~~~m~~~~~~p~~-~~~~~l~~~~~~---~-----g~~~~a~~~~~~~~ 460 (600)
+.+...|...+.+.. ..+ +..+|..+|++..+. .|+. ..+..+..++.. . .......+.++...
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~ 268 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIV 268 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHH
Confidence 456677777766543 223 346788888888874 5653 333333333320 0 01111111222111
Q ss_pred hhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHhCC-CCCCHHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCC
Q 007519 461 DVYKIQP-GPEHYVSMINLLGRAGKIKEAEEFVLRLP-FEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDP 533 (600)
Q Consensus 461 ~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p 533 (600)
.. ...| ++.++..+...+...|++++|...++++. ..|+...|..+...+. -.|+.++|+..+++++.++|
T Consensus 269 a~-~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~-~~G~~~eA~e~~~~AlrL~P 341 (372)
T 3ly7_A 269 TL-PELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYE-MKGMNREAADAYLTAFNLRP 341 (372)
T ss_dssp TC-GGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHSC
T ss_pred hc-ccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHhcCC
Confidence 11 1223 46666666666666677777777777654 4566555544444555 66777777777777777777
No 211
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.29 E-value=0.00078 Score=50.37 Aligned_cols=64 Identities=13% Similarity=0.174 Sum_probs=35.0
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccCchHHHHHHHHHHHh
Q 007519 397 DLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFD 461 (600)
Q Consensus 397 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 461 (600)
+...|..+..++...|++++|+..|++..+.. +.+...|..+..++...|++++|.+.++++.+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34455555555666666666666666655532 22334455555555566666666666655553
No 212
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.25 E-value=0.00081 Score=48.97 Aligned_cols=64 Identities=28% Similarity=0.198 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCCCcHHHHhHHHHhhCCcHHHHHHHHHHhhc
Q 007519 501 HRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLK 565 (600)
Q Consensus 501 ~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 565 (600)
...+..+...+. ..|++++|+..++++++..|+++.++..++.++...|++++|...++...+.
T Consensus 9 ~~~~~~la~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 9 AEAWYNLGNAYY-KQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 446667777777 9999999999999999999999999999999999999999999977766554
No 213
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.17 E-value=0.0033 Score=58.56 Aligned_cols=130 Identities=12% Similarity=0.088 Sum_probs=89.6
Q ss_pred CCCChhHHHHHHHHhcc-----cCchHHHHHHHHHHHhhcCCCCC-cchHHHHHHHHhh---cC-C-------hHHHHHH
Q 007519 429 THPNSVTFLGILSACSH-----AGLVSRGWELFNAMFDVYKIQPG-PEHYVSMINLLGR---AG-K-------IKEAEEF 491 (600)
Q Consensus 429 ~~p~~~~~~~l~~~~~~-----~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~---~g-~-------~~~A~~~ 491 (600)
.+.+...|...+++... ..+..+|..+|+++.+. .|+ ...+..+..+|.- .+ . ...+.+.
T Consensus 190 ~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l---DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a 266 (372)
T 3ly7_A 190 LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS---SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDN 266 (372)
T ss_dssp SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHH
Confidence 46677778877765432 34568899999999975 785 4555555554431 11 1 1122222
Q ss_pred HHhCC-CCCCHHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCCCcHHHHhHHHHhhCCcHHHHHHHHHHh
Q 007519 492 VLRLP-FEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMG 563 (600)
Q Consensus 492 ~~~~~-~~p~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 563 (600)
...+. .+.++..+..+...+. ..|++++|+..++++++++| +...|..+++++.-.|++++|.+.++...
T Consensus 267 ~~a~~~~~~~a~~~~alal~~l-~~gd~d~A~~~l~rAl~Ln~-s~~a~~llG~~~~~~G~~~eA~e~~~~Al 337 (372)
T 3ly7_A 267 IVTLPELNNLSIIYQIKAVSAL-VKGKTDESYQAINTGIDLEM-SWLNYVLLGKVYEMKGMNREAADAYLTAF 337 (372)
T ss_dssp HHTCGGGTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHhcccCCcCHHHHHHHHHHHH-hCCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 22333 3345666666666666 78999999999999999998 77788899999999999999999664433
No 214
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.15 E-value=0.0021 Score=47.70 Aligned_cols=64 Identities=20% Similarity=0.183 Sum_probs=48.2
Q ss_pred HHHHHhhcCChHHHHHHHHhCC-CCC-CHH-HHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCCCcH
Q 007519 475 MINLLGRAGKIKEAEEFVLRLP-FEP-DHR-IWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAH 539 (600)
Q Consensus 475 l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~-~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 539 (600)
.+..+.+.|++++|.+.+++.. ..| +.. .+..+..++. ..|++++|+..++++++++|+++.++
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYR-KLGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 4566778888888888887764 344 445 6666666777 88899999999999999888777665
No 215
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.08 E-value=0.0019 Score=62.75 Aligned_cols=94 Identities=11% Similarity=0.010 Sum_probs=69.5
Q ss_pred ccCchHHHHHHHHHHHhhc--CCCCC----cchHHHHHHHHhhcCChHHHHHHHHhCC---------CCCCH-HHHHHHH
Q 007519 445 HAGLVSRGWELFNAMFDVY--KIQPG----PEHYVSMINLLGRAGKIKEAEEFVLRLP---------FEPDH-RIWGALL 508 (600)
Q Consensus 445 ~~g~~~~a~~~~~~~~~~~--~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~---------~~p~~-~~~~~l~ 508 (600)
..|++++|..++++..+.. -+.|+ ..+++.|+.+|...|++++|+.++++.. ..|+. .+++.+.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 4577888888888776532 12332 5678889999999999999998887752 44543 4678888
Q ss_pred HHHhhhhCCHHHHHHHHHHHHh-----hCCCCCCcH
Q 007519 509 GACGFCEGNAEIAEHAAKRLLE-----LDPLNAPAH 539 (600)
Q Consensus 509 ~~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~~~ 539 (600)
..+. .+|++++|+.+++++++ +.|++|.+-
T Consensus 390 ~~~~-~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~ 424 (433)
T 3qww_A 390 RLYM-GLENKAAGEKALKKAIAIMEVAHGKDHPYIS 424 (433)
T ss_dssp HHHH-HTTCHHHHHHHHHHHHHHHHHHTCTTCHHHH
T ss_pred HHHH-hccCHHHHHHHHHHHHHHHHHHcCCCChHHH
Confidence 8888 99999999999999988 567555443
No 216
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=97.04 E-value=0.011 Score=63.48 Aligned_cols=153 Identities=14% Similarity=0.146 Sum_probs=93.4
Q ss_pred HHHHHhcCChhhHHH-HhccCCCCCcchHHHHHHHHHcCCChhHHHHHhhhcCCCChhhHHHHHHHHHhcCChHHHHHHh
Q 007519 18 ITKYSKRGFIDEAKA-LFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLF 96 (600)
Q Consensus 18 ~~~~~~~g~~~~A~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 96 (600)
.......+++++|.+ ++..+. +......++..+.+.|.++.|.++.+.. ..-.......|+++.|.++.
T Consensus 606 ~~~~~~~~~~~~a~~~~l~~i~--~~~~~~~~~~~l~~~~~~~~a~~~~~~~--------~~~f~~~l~~~~~~~A~~~~ 675 (814)
T 3mkq_A 606 FQTLTLRGEIEEAIENVLPNVE--GKDSLTKIARFLEGQEYYEEALNISPDQ--------DQKFELALKVGQLTLARDLL 675 (814)
T ss_dssp HHHHHHTTCHHHHHHHTGGGCC--CHHHHHHHHHHHHHTTCHHHHHHHCCCH--------HHHHHHHHHHTCHHHHHHHH
T ss_pred HhHHHHhCCHHHHHHHHHhcCC--chHHHHHHHHHHHhCCChHHheecCCCc--------chheehhhhcCCHHHHHHHH
Confidence 344456788888887 665543 1223377777788888888888766421 12234456788888888887
Q ss_pred hcCCCCCceeHHHHHHHHHHCCChhHHHHHhhcCCCCCcccHHHHHHHHHhcCCHhHHHHHHHhcccCCchhHHHHHHHH
Q 007519 97 EEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGY 176 (600)
Q Consensus 97 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~ 176 (600)
+.+. +...|..+...+.+.++++.|.+.|.++.. |..+...+...|+.+...++.+...... -++.-..+|
T Consensus 676 ~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d-----~~~l~~l~~~~~~~~~~~~~~~~a~~~~--~~~~A~~~~ 746 (814)
T 3mkq_A 676 TDES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD-----LESLFLLHSSFNNKEGLVTLAKDAETTG--KFNLAFNAY 746 (814)
T ss_dssp TTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC-----HHHHHHHHHHTTCHHHHHHHHHHHHHTT--CHHHHHHHH
T ss_pred HhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC-----hhhhHHHHHHcCCHHHHHHHHHHHHHcC--chHHHHHHH
Confidence 7664 456788888888888888888888887633 3445555555666555444433322211 112223334
Q ss_pred HhcCChhHHHHHH
Q 007519 177 CRAGEVEEGYCLF 189 (600)
Q Consensus 177 ~~~g~~~~A~~~~ 189 (600)
.+.|++++|.+++
T Consensus 747 ~~~g~~~~a~~~~ 759 (814)
T 3mkq_A 747 WIAGDIQGAKDLL 759 (814)
T ss_dssp HHHTCHHHHHHHH
T ss_pred HHcCCHHHHHHHH
Confidence 4555555555553
No 217
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.98 E-value=0.0017 Score=63.01 Aligned_cols=83 Identities=11% Similarity=0.001 Sum_probs=66.1
Q ss_pred hcCChHHHHHHHHhCC---------CCCC-HHHHHHHHHHHhhhhCCHHHHHHHHHHHHh-----hCCCCC---CcHHHH
Q 007519 481 RAGKIKEAEEFVLRLP---------FEPD-HRIWGALLGACGFCEGNAEIAEHAAKRLLE-----LDPLNA---PAHVVL 542 (600)
Q Consensus 481 ~~g~~~~A~~~~~~~~---------~~p~-~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~-----~~p~~~---~~~~~l 542 (600)
..|++++|+.++++.. ..|+ ..+++.+..+|. ..|++++|+.+++++++ +.|++| ..++.|
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~-~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nL 388 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCL-YMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKL 388 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHH-hhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 4578899998887641 2333 356888999999 99999999999999998 456555 568899
Q ss_pred hHHHHhhCCcHHHHHHHHHHhh
Q 007519 543 CNIYAASGRHVEEHKLRMDMGL 564 (600)
Q Consensus 543 ~~~~~~~g~~~~A~~~~~~~~~ 564 (600)
+.+|..+|++++|..+++...+
T Consensus 389 a~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 389 GRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhccCHHHHHHHHHHHHH
Confidence 9999999999999997665543
No 218
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.91 E-value=0.0052 Score=59.79 Aligned_cols=100 Identities=8% Similarity=-0.103 Sum_probs=73.4
Q ss_pred HHHhcccCchHHHHHHHHHHHhhcC--CCCC----cchHHHHHHHHhhcCChHHHHHHHHhCC---------CCCCH-HH
Q 007519 440 LSACSHAGLVSRGWELFNAMFDVYK--IQPG----PEHYVSMINLLGRAGKIKEAEEFVLRLP---------FEPDH-RI 503 (600)
Q Consensus 440 ~~~~~~~g~~~~a~~~~~~~~~~~~--~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~---------~~p~~-~~ 503 (600)
+..+...|++++|..+++++.+... +.|+ ..+++.|+.+|...|++++|+.++++.. ..|+. .+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 3445567888899888888875421 2232 5678888999999999999998887652 34443 45
Q ss_pred HHHHHHHHhhhhCCHHHHHHHHHHHHh-----hCCCCCCcHH
Q 007519 504 WGALLGACGFCEGNAEIAEHAAKRLLE-----LDPLNAPAHV 540 (600)
Q Consensus 504 ~~~l~~~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~~~~ 540 (600)
++.+...+. .+|++++|+.+++++++ +.|++|.+-.
T Consensus 374 l~nLa~~~~-~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~ 414 (429)
T 3qwp_A 374 VMKVGKLQL-HQGMFPQAMKNLRLAFDIMRVTHGREHSLIED 414 (429)
T ss_dssp HHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHH
T ss_pred HHHHHHHHH-hcCCHHHHHHHHHHHHHHHHHhcCCCChHHHH
Confidence 777888888 99999999999999988 5676665544
No 219
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.89 E-value=0.0022 Score=47.60 Aligned_cols=58 Identities=17% Similarity=0.142 Sum_probs=51.0
Q ss_pred HHHHhhhhCCHHHHHHHHHHHHhhCCCCCC-cHHHHhHHHHhhCCcHHHHHHHHHHhhcC
Q 007519 508 LGACGFCEGNAEIAEHAAKRLLELDPLNAP-AHVVLCNIYAASGRHVEEHKLRMDMGLKG 566 (600)
Q Consensus 508 ~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 566 (600)
...+. ..|++++|+..++++++..|+++. .+..++.++...|++++|.+.++...+..
T Consensus 7 a~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 7 IKELI-NQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHH-HHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHH-HcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 34455 889999999999999999999989 99999999999999999999777666543
No 220
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.86 E-value=0.0035 Score=61.05 Aligned_cols=88 Identities=14% Similarity=0.002 Sum_probs=69.6
Q ss_pred HHHHhhcCChHHHHHHHHhCC------CCCC----HHHHHHHHHHHhhhhCCHHHHHHHHHHHHh-----hCCCCC---C
Q 007519 476 INLLGRAGKIKEAEEFVLRLP------FEPD----HRIWGALLGACGFCEGNAEIAEHAAKRLLE-----LDPLNA---P 537 (600)
Q Consensus 476 ~~~~~~~g~~~~A~~~~~~~~------~~p~----~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~-----~~p~~~---~ 537 (600)
+.-+.+.|++++|++++++.. +.|+ ..+++.+...|. ..|++++|+.+++++++ +.|++| .
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~-~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~ 372 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACI-NLGLLEEALFYGTRTMEPYRIFFPGSHPVRGV 372 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHH-hhccHHHHHHHHHHHHHhHHHHcCCCChHHHH
Confidence 445668899999999987641 3333 346888888999 99999999999999988 445554 5
Q ss_pred cHHHHhHHHHhhCCcHHHHHHHHHHhh
Q 007519 538 AHVVLCNIYAASGRHVEEHKLRMDMGL 564 (600)
Q Consensus 538 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 564 (600)
.+..|+.+|...|++++|..+++...+
T Consensus 373 ~l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 373 QVMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 688999999999999999996665543
No 221
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.75 E-value=0.031 Score=59.99 Aligned_cols=152 Identities=15% Similarity=0.114 Sum_probs=83.4
Q ss_pred HHHHHCCChhHHHH-HhhcCCCCCcccHHHHHHHHHhcCCHhHHHHHHHhcccCCchhHHHHHHHHHhcCChhHHHHHHc
Q 007519 112 VGLIRNGELNEARK-VFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFR 190 (600)
Q Consensus 112 ~~~~~~~~~~~a~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 190 (600)
......+++++|.+ ++..+. +......++..+.+.|..+.|.++.+.. ..-.......|+++.|.++.+
T Consensus 607 ~~~~~~~~~~~a~~~~l~~i~--~~~~~~~~~~~l~~~~~~~~a~~~~~~~--------~~~f~~~l~~~~~~~A~~~~~ 676 (814)
T 3mkq_A 607 QTLTLRGEIEEAIENVLPNVE--GKDSLTKIARFLEGQEYYEEALNISPDQ--------DQKFELALKVGQLTLARDLLT 676 (814)
T ss_dssp HHHHHTTCHHHHHHHTGGGCC--CHHHHHHHHHHHHHTTCHHHHHHHCCCH--------HHHHHHHHHHTCHHHHHHHHT
T ss_pred hHHHHhCCHHHHHHHHHhcCC--chHHHHHHHHHHHhCCChHHheecCCCc--------chheehhhhcCCHHHHHHHHH
Confidence 33445677777766 554432 1222355666666777777776654321 111334566778888877776
Q ss_pred cCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHhcCChhhHHHHhcccCCCCchhHH
Q 007519 191 RMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRDEISWT 270 (600)
Q Consensus 191 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 270 (600)
.+. +...|..+...+.+.|+++.|.++|..+.. |..+...+...++.+...++-+.....+ -++
T Consensus 677 ~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d------------~~~l~~l~~~~~~~~~~~~~~~~a~~~~--~~~ 740 (814)
T 3mkq_A 677 DES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD------------LESLFLLHSSFNNKEGLVTLAKDAETTG--KFN 740 (814)
T ss_dssp TCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC------------HHHHHHHHHHTTCHHHHHHHHHHHHHTT--CHH
T ss_pred hhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC------------hhhhHHHHHHcCCHHHHHHHHHHHHHcC--chH
Confidence 663 456777888888888888888888777653 2334444444555554433322222111 112
Q ss_pred HHHHHHHhcCChHHHHHHH
Q 007519 271 SMIDGYLSVGQVSNAYYLF 289 (600)
Q Consensus 271 ~l~~~~~~~~~~~~A~~~~ 289 (600)
....+|.+.|++++|++++
T Consensus 741 ~A~~~~~~~g~~~~a~~~~ 759 (814)
T 3mkq_A 741 LAFNAYWIAGDIQGAKDLL 759 (814)
T ss_dssp HHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHH
Confidence 2333444556666555553
No 222
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=96.67 E-value=0.68 Score=47.02 Aligned_cols=317 Identities=9% Similarity=-0.045 Sum_probs=166.0
Q ss_pred HHhcCChhHHHHHHccCCCCCcchHHHHHHHHHhcC--ChhHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHhcCChhh
Q 007519 176 YCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNG--FHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEE 253 (600)
Q Consensus 176 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 253 (600)
..+.|++..+..+...+.......|...-..-...+ ...+....+.+-. +.+.....-..-+..+.+.+++..
T Consensus 16 a~~~~~~~~~~~l~~~l~~~pL~~yl~y~~l~~~l~~~~~~ev~~Fl~~~~-----~~p~~~~Lr~~~l~~l~~~~~w~~ 90 (618)
T 1qsa_A 16 AWDNRQMDVVEQMMPGLKDYPLYPYLEYRQITDDLMNQPAVTVTNFVRANP-----TLPPARTLQSRFVNELARREDWRG 90 (618)
T ss_dssp HHHTTCHHHHHHHSGGGTTSTTHHHHHHHHHHHTGGGCCHHHHHHHHHHCT-----TCHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHCCCHHHHHHHHHhhcCCCcHHHHHHHHHHhCcccCCHHHHHHHHHHCC-----CChhHHHHHHHHHHHHHhCCCHHH
Confidence 456688888888877775433333332222111112 3444444444332 112222333445666777888888
Q ss_pred HHHHhcccCCCCchhHHHHHHHHHhcCChHHHHHHHhhCCC---CChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCC
Q 007519 254 AQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPD---RDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPP 330 (600)
Q Consensus 254 a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 330 (600)
...++.. .+.+...-.....+....|+..+|......+-. .....+..+ |..+.+.|...
T Consensus 91 ~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~~p~~c~~l----------------~~~~~~~g~lt 153 (618)
T 1qsa_A 91 LLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPNACDKL----------------FSVWRASGKQD 153 (618)
T ss_dssp HHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCCTHHHHH----------------HHHHHHTTCSC
T ss_pred HHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCcHHHHHH----------------HHHHHHCCCCC
Confidence 8887776 455666666677777778886655554333211 122333444 44444333222
Q ss_pred ChhHHHHHHHHHhcccchhhhHHHHHHHhhhcCCCch-hHHHHHHHHHHhcCChHHHHHHHhcCCCCChh---hHHHHHH
Q 007519 331 LNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDL-ILENCLISMYAKCGVIDNAYNIFSNMVSRDLV---SWNSMVM 406 (600)
Q Consensus 331 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~l~~ 406 (600)
+...+.- +......|+...|..+...+ .++. .....++..+. +...+....... .++.. .+...+.
T Consensus 154 ~~~~~~R-~~~al~~~~~~~a~~l~~~l-----~~~~~~~a~~~~al~~---~p~~~~~~~~~~-~~~~~~~~~~~~~~~ 223 (618)
T 1qsa_A 154 PLAYLER-IRLAMKAGNTGLVTVLAGQM-----PADYQTIASAIISLAN---NPNTVLTFARTT-GATDFTRQMAAVAFA 223 (618)
T ss_dssp HHHHHHH-HHHHHHTTCHHHHHHHHHTC-----CGGGHHHHHHHHHHHH---CGGGHHHHHHHS-CCCHHHHHHHHHHHH
T ss_pred HHHHHHH-HHHHHHCCCHHHHHHHHHhC-----CHHHHHHHHHHHHHHh---ChHhHHHHHhcc-CCChhhHHHHHHHHH
Confidence 2222221 23333445555555554432 1221 12233333333 233333333332 22222 1122222
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCChhH----HHHHHHHhcccCchHHHHHHHHHHHhhcCCCCCcchHHHHHHHHhhc
Q 007519 407 GFSHHGLANETLKVFESMLESGTHPNSVT----FLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRA 482 (600)
Q Consensus 407 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~----~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 482 (600)
-+.+ .+.+.|...|....... ..+... ...+.......+...++...+...... .++.....-.+....+.
T Consensus 224 rlar-~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~e~~~r~Alr~ 298 (618)
T 1qsa_A 224 SVAR-QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR---SQSTSLIERRVRMALGT 298 (618)
T ss_dssp HHHH-HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT---CCCHHHHHHHHHHHHHH
T ss_pred HHHh-cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc---CCChHHHHHHHHHHHHC
Confidence 3333 47899999999887643 233322 223333445556455666666665432 23333344455555678
Q ss_pred CChHHHHHHHHhCCCCC--CHHHHHHHHHHHhhhhCCHHHHHHHHHHHHh
Q 007519 483 GKIKEAEEFVLRLPFEP--DHRIWGALLGACGFCEGNAEIAEHAAKRLLE 530 (600)
Q Consensus 483 g~~~~A~~~~~~~~~~p--~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~ 530 (600)
|+++.|.+.|+.++..+ .....-.+..+.. ..|+.++|..+|+++..
T Consensus 299 ~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~-~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 299 GDRRGLNTWLARLPMEAKEKDEWRYWQADLLL-ERGREAEAKEILHQLMQ 347 (618)
T ss_dssp TCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHH-HTTCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHccccccccHhHHHHHHHHHH-HcCCHHHHHHHHHHHhc
Confidence 99999999999997433 2333444555666 88999999999999875
No 223
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=96.66 E-value=0.25 Score=42.45 Aligned_cols=157 Identities=6% Similarity=0.022 Sum_probs=76.5
Q ss_pred hcCCCChhhHHHHHHHHHhcCChHHHHHHhhcCCCCCceeHHHHHHHHHHCCChhHHHHHhhcCCCCCcccHHHHHHHHH
Q 007519 67 EMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYV 146 (600)
Q Consensus 67 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~ 146 (600)
.+..++..+-...+..+.+.|..+....+.+.+..+|.......+.++...++.+....+.+.+.+++...-...+.++.
T Consensus 27 ~L~~~~~~vR~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~ 106 (211)
T 3ltm_A 27 NLQDDSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDERAVEPLIKALKDEDGWVRQSAAVALG 106 (211)
T ss_dssp HTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHHHhCCccHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 33334444444445555555554333334444444555555555555555555444444444444455555555555555
Q ss_pred hcCCHhHHHHHHHhcccCCchhHHHHHHHHHhcCChhHHHHHHccCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHH
Q 007519 147 ECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMK 224 (600)
Q Consensus 147 ~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 224 (600)
+.|+.+....+.+.+.+++..+....+.++.+.|+.+....+...+..++...-...+.++.+.+. ..+...+..+.
T Consensus 107 ~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-~~~~~~L~~~l 183 (211)
T 3ltm_A 107 QIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGG-ERVRAAMEKLA 183 (211)
T ss_dssp HHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-HHHHHHHHHHH
T ss_pred HhCcHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-hhHHHHHHHHH
Confidence 555544444444444455555555555555555554433333333334454444455555555544 33444444444
No 224
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.45 E-value=0.0094 Score=53.08 Aligned_cols=56 Identities=14% Similarity=0.094 Sum_probs=29.7
Q ss_pred CCHHHHHHHHHHHHhhCCCC-CCcHHHHhHHHHhh-CCcHHHHHHHHHHhhcCCccCC
Q 007519 516 GNAEIAEHAAKRLLELDPLN-APAHVVLCNIYAAS-GRHVEEHKLRMDMGLKGVRKVP 571 (600)
Q Consensus 516 g~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~ 571 (600)
|+.++|.++|+++++++|+. ..++...+..++.. |+.++|.+.++.......+..|
T Consensus 218 Gd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~~P 275 (301)
T 3u64_A 218 GGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPESVP 275 (301)
T ss_dssp CCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGGCS
T ss_pred CCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCC
Confidence 55555555555555555542 55555555555542 5555555555555444444333
No 225
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.40 E-value=0.0072 Score=48.17 Aligned_cols=88 Identities=14% Similarity=-0.039 Sum_probs=62.1
Q ss_pred CchHHHHHHHHHHHhhcCCCCCcchHHHHHHHHhhcC---ChHHHHHHHHhCC-CC-C-C-HHHHHHHHHHHhhhhCCHH
Q 007519 447 GLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAG---KIKEAEEFVLRLP-FE-P-D-HRIWGALLGACGFCEGNAE 519 (600)
Q Consensus 447 g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~-~~-p-~-~~~~~~l~~~~~~~~g~~~ 519 (600)
+....+.+.|.+.... + .++..+...++.++++++ +.+++..++++.. .. | + ...+..+.-++. +.|+++
T Consensus 12 ~~l~~~~~~y~~e~~~-~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~-kl~~Y~ 88 (152)
T 1pc2_A 12 EDLLKFEKKFQSEKAA-G-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNY-RLKEYE 88 (152)
T ss_dssp HHHHHHHHHHHHHHHT-T-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH-HTSCHH
T ss_pred HHHHHHHHHHHHHHcc-C-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHH-HccCHH
Confidence 4455666666666553 2 257778888888888888 6668888887764 23 5 2 334445555666 899999
Q ss_pred HHHHHHHHHHhhCCCCCC
Q 007519 520 IAEHAAKRLLELDPLNAP 537 (600)
Q Consensus 520 ~a~~~~~~~~~~~p~~~~ 537 (600)
+|.+.++++++.+|+|..
T Consensus 89 ~A~~y~~~lL~ieP~n~Q 106 (152)
T 1pc2_A 89 KALKYVRGLLQTEPQNNQ 106 (152)
T ss_dssp HHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHhcCCCCHH
Confidence 999999999999995443
No 226
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.39 E-value=0.0098 Score=44.59 Aligned_cols=72 Identities=19% Similarity=0.097 Sum_probs=49.9
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHhCC---------CCCCHHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCCCcHHH
Q 007519 471 HYVSMINLLGRAGKIKEAEEFVLRLP---------FEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVV 541 (600)
Q Consensus 471 ~~~~l~~~~~~~g~~~~A~~~~~~~~---------~~p~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 541 (600)
.+..|+..+.+.|+++.|...++... ..+...++..+..++. +.|+++.|+.++++++++.|+++.+...
T Consensus 7 dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~-~~g~~~~A~~~~~~al~l~P~~~~~~~n 85 (104)
T 2v5f_A 7 DCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVY-QQGDLDKALLLTKKLLELDPEHQRANGN 85 (104)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHH-HccCHHHHHHHHHHHHhcCCCCHHHHhh
Confidence 44456666666666666666665531 1134556777777787 9999999999999999999977666555
Q ss_pred Hh
Q 007519 542 LC 543 (600)
Q Consensus 542 l~ 543 (600)
+.
T Consensus 86 ~~ 87 (104)
T 2v5f_A 86 LK 87 (104)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 227
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=96.31 E-value=0.2 Score=43.09 Aligned_cols=157 Identities=10% Similarity=0.052 Sum_probs=114.5
Q ss_pred CChhhHHHHhccCCCCCcchHHHHHHHHHcCCChhHHHHHhhhcCCCChhhHHHHHHHHHhcCChHHHHHHhhcCCCCCc
Q 007519 25 GFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNV 104 (600)
Q Consensus 25 g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 104 (600)
++.+....+.+.+..++...-...+..+.+.|..+....+.+.+..+|..+-...+.++.+.++.+....+.+.+..+|.
T Consensus 16 ~~~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~~~~ 95 (211)
T 3ltm_A 16 ADPEKVEMYIKNLQDDSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDERAVEPLIKALKDEDG 95 (211)
T ss_dssp CCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSH
T ss_pred cCHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCCccHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCH
Confidence 34444455555566677777777778888878766556666666668877777778888888876666666666666888
Q ss_pred eeHHHHHHHHHHCCChhHHHHHhhcCCCCCcccHHHHHHHHHhcCCHhHHHHHHHhcccCCchhHHHHHHHHHhcCC
Q 007519 105 VSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGE 181 (600)
Q Consensus 105 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~ 181 (600)
......+.++.+.++.+..-.+.+-+.+++...-...+.++...|+.+....+...+.+++..+....+.++.+.+.
T Consensus 96 ~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~ 172 (211)
T 3ltm_A 96 WVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGG 172 (211)
T ss_dssp HHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc
Confidence 88888888888888876666666666668888888888888888887655556565556787777777888887776
No 228
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=96.24 E-value=0.23 Score=42.31 Aligned_cols=175 Identities=9% Similarity=0.037 Sum_probs=99.3
Q ss_pred hccCCCCCcchHHHHHHHHHcCCChhHHHHHhhhcCCCChhhHHHHHHHHHhcCChHHHHHHhhcCCCCCceeHHHHHHH
Q 007519 34 FQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVG 113 (600)
Q Consensus 34 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~ 113 (600)
++.+..++...-...+..+...|..+....+.+.+..++..+-...+.++.+.|..+....+.+.+..+|.......+.+
T Consensus 20 i~~L~~~~~~vr~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~~~~~~L~~~l~d~~~~vr~~a~~a 99 (201)
T 3ltj_A 20 IKNLQDDSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDERAVEPLIKALKDEDGWVRQSAAVA 99 (201)
T ss_dssp HHHTTCSCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHH
T ss_pred HHHhcCCCHHHHHHHHHHHHhcCChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 33444455555555555555555544444455555456666656666666666665555555555555666666667777
Q ss_pred HHHCCChhHHHHHhhcCCCCCcccHHHHHHHHHhcCCHhHHHHHHHhcccCCchhHHHHHHHHHhcCChhHHHHHHccC-
Q 007519 114 LIRNGELNEARKVFNSMPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRM- 192 (600)
Q Consensus 114 ~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~- 192 (600)
+.+.++.+....+.+.+.+++...-...+.++...++.+....+...+.+++..+....+.++.+.|+.+ +...+..+
T Consensus 100 L~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~~-~~~~L~~~l 178 (201)
T 3ltj_A 100 LGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGGER-VRAAMEKLA 178 (201)
T ss_dssp HHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHTCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCSHH-HHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCchh-HHHHHHHHH
Confidence 7777766555555555555666666666777777776555444555455566666666666666666543 33333333
Q ss_pred CCCCcchHHHHHHHHHh
Q 007519 193 PRKNVVSWTAMIGGFAW 209 (600)
Q Consensus 193 ~~~~~~~~~~li~~~~~ 209 (600)
..++...-...+.++.+
T Consensus 179 ~d~~~~vr~~A~~aL~~ 195 (201)
T 3ltj_A 179 ETGTGFARKVAVNYLET 195 (201)
T ss_dssp HHCCHHHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHH
Confidence 23444444444444443
No 229
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.24 E-value=0.033 Score=40.50 Aligned_cols=66 Identities=12% Similarity=-0.036 Sum_probs=46.5
Q ss_pred CcchHHHHHHHHhhcCC---hHHHHHHHHhCC-CCCC-HHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCC
Q 007519 468 GPEHYVSMINLLGRAGK---IKEAEEFVLRLP-FEPD-HRIWGALLGACGFCEGNAEIAEHAAKRLLELDPL 534 (600)
Q Consensus 468 ~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~ 534 (600)
++..+..++.++...++ .++|..++++.. ..|+ ......+...+. ..|++++|+..|+++++.+|.
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~-~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHF-ISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTCCCT
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhhCCC
Confidence 56677777777754444 688888887764 4554 445555555566 888888888888888888885
No 230
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=96.12 E-value=0.54 Score=39.93 Aligned_cols=162 Identities=6% Similarity=0.021 Sum_probs=98.4
Q ss_pred HHhhhcCCCChhhHHHHHHHHHhcCChHHHHHHhhcCCCCCceeHHHHHHHHHHCCChhHHHHHhhcCCCCCcccHHHHH
Q 007519 63 RLFEEMPERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVISWNAMI 142 (600)
Q Consensus 63 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~ 142 (600)
.+++.+..+|..+-...+.++.+.|..+....+.+.+..+|.......+.++...++.+..-.+.+.+.+++...-...+
T Consensus 18 ~~i~~L~~~~~~vr~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~~~~~~L~~~l~d~~~~vr~~a~ 97 (201)
T 3ltj_A 18 MYIKNLQDDSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDERAVEPLIKALKDEDGWVRQSAA 97 (201)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHhcCChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHHHHHHHH
Confidence 34444445666666666666666666555555555555566666666677777777665555555555567777777777
Q ss_pred HHHHhcCCHhHHHHHHHhcccCCchhHHHHHHHHHhcCChhHHHHHHccCCCCCcchHHHHHHHHHhcCChhHHHHHHHH
Q 007519 143 AGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIE 222 (600)
Q Consensus 143 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 222 (600)
.++...++.+....+.+.+.+++..+....+.++.+.++.+....+...+..++...-...+.++...|. ..+...+..
T Consensus 98 ~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~-~~~~~~L~~ 176 (201)
T 3ltj_A 98 VALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGG-ERVRAAMEK 176 (201)
T ss_dssp HHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHTCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-HHHHHHHHH
T ss_pred HHHHHhCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-hhHHHHHHH
Confidence 7777777765555555555566666666667777776665444444444445555555566666666654 345555555
Q ss_pred HHh
Q 007519 223 MKG 225 (600)
Q Consensus 223 ~~~ 225 (600)
+..
T Consensus 177 ~l~ 179 (201)
T 3ltj_A 177 LAE 179 (201)
T ss_dssp HHH
T ss_pred HHh
Confidence 543
No 231
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.93 E-value=0.32 Score=39.83 Aligned_cols=45 Identities=16% Similarity=0.355 Sum_probs=20.3
Q ss_pred HhcCChHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHH
Q 007519 378 AKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESM 424 (600)
Q Consensus 378 ~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m 424 (600)
...|+++.|.++.+.+ .+...|..|.......|+++-|.+.|.+.
T Consensus 16 L~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp HHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 3444555544444433 23344444444444444444444444443
No 232
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=95.88 E-value=2.2 Score=45.10 Aligned_cols=159 Identities=9% Similarity=0.043 Sum_probs=69.0
Q ss_pred HhcccchhhhHHHHHHHhhhcCCCchhHHHHHHHHHHhcCChHHHHHHHhcCC-CCChh-hHH---HHHHHHHhcCChHH
Q 007519 342 AGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMV-SRDLV-SWN---SMVMGFSHHGLANE 416 (600)
Q Consensus 342 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~~~-~~~---~l~~~~~~~~~~~~ 416 (600)
+.-.|+.+....++..+.+.. ..+..-...+.-++...|+.+.+..+++.+. ..+.. -|. ++..+|+..|+...
T Consensus 500 ~vGTgn~~ai~~LL~~~~e~~-~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~a 578 (963)
T 4ady_A 500 MLGTGKPEAIHDMFTYSQETQ-HGNITRGLAVGLALINYGRQELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSA 578 (963)
T ss_dssp HTTCCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHH
T ss_pred hcccCCHHHHHHHHHHHhccC-cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHH
Confidence 334556666666666544321 1111111222222334556555555555443 12221 122 22334556666666
Q ss_pred HHHHHHHHHHcCCCCChhHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCCCcchHHHHHHHHhhcCCh-HHHHHHHHhC
Q 007519 417 TLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKI-KEAEEFVLRL 495 (600)
Q Consensus 417 a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~-~~A~~~~~~~ 495 (600)
..++++.+.+.. ..+......+.-++...|+.+.+.++++.+.+. ..|...--..++-+....|.. .+|.+.+..+
T Consensus 579 Iq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~--~d~~VR~gAalALGli~aGn~~~~aid~L~~L 655 (963)
T 4ady_A 579 VKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKS--HNAHVRCGTAFALGIACAGKGLQSAIDVLDPL 655 (963)
T ss_dssp HHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGC--SCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHH
T ss_pred HHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHhccCCCcHHHHHHHHHH
Confidence 666666666531 112222222222333345555555555544432 233333333333333333332 5566666666
Q ss_pred CCCCCHHHH
Q 007519 496 PFEPDHRIW 504 (600)
Q Consensus 496 ~~~p~~~~~ 504 (600)
...++..+-
T Consensus 656 ~~D~d~~Vr 664 (963)
T 4ady_A 656 TKDPVDFVR 664 (963)
T ss_dssp HTCSSHHHH
T ss_pred ccCCCHHHH
Confidence 545555443
No 233
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=95.52 E-value=0.59 Score=35.84 Aligned_cols=141 Identities=13% Similarity=0.167 Sum_probs=91.2
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCCCcchHHHHHHHHhhcCChHH
Q 007519 408 FSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKE 487 (600)
Q Consensus 408 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 487 (600)
+.-.|..++..++..+.... .+..-++.++--....-+=+-..+.++.+-+-+.+. .+|+...
T Consensus 17 ~ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis--------------~C~NlKr 79 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLD--------------KCQNLKS 79 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGG--------------GCSCTHH
T ss_pred HHHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhhcCcH--------------hhhcHHH
Confidence 44567788888888777653 233444444433333334444455555554332222 3444444
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCCCcHHHHhHHHHhhCCcHHHHHHHHHHhhcCC
Q 007519 488 AEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGV 567 (600)
Q Consensus 488 A~~~~~~~~~~p~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 567 (600)
....+-.+. .+...++..+.... .+|..++-.+++..++...|.+|.....++.+|.+.|+..+|.+++.+.-++|+
T Consensus 80 Vi~C~~~~n--~~se~vd~ALd~lv-~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 80 VVECGVINN--TLNEHVNKALDILV-IQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHHHHHTT--CCCHHHHHHHHHHH-HTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhc--chHHHHHHHHHHHH-HhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 444444432 24445566667777 889999999999886665555899999999999999999999999999999988
Q ss_pred c
Q 007519 568 R 568 (600)
Q Consensus 568 ~ 568 (600)
+
T Consensus 157 k 157 (172)
T 1wy6_A 157 K 157 (172)
T ss_dssp H
T ss_pred H
Confidence 5
No 234
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=95.12 E-value=0.046 Score=48.75 Aligned_cols=107 Identities=14% Similarity=0.110 Sum_probs=65.2
Q ss_pred chHHHHHHHHHHHhhcCCCCC---cchHHHHHHHHhh-----cCChHHHHHHHHhCC-CCCC--HHHHHHHHHHHhhhhC
Q 007519 448 LVSRGWELFNAMFDVYKIQPG---PEHYVSMINLLGR-----AGKIKEAEEFVLRLP-FEPD--HRIWGALLGACGFCEG 516 (600)
Q Consensus 448 ~~~~a~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~-----~g~~~~A~~~~~~~~-~~p~--~~~~~~l~~~~~~~~g 516 (600)
....|...++++.+. .|+ -..|..|+..|.. -|+.++|.+.|++.. +.|+ ..++......+....|
T Consensus 178 ~l~~A~a~lerAleL---DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~g 254 (301)
T 3u64_A 178 TVHAAVMMLERACDL---WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLN 254 (301)
T ss_dssp HHHHHHHHHHHHHHH---CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTT
T ss_pred hHHHHHHHHHHHHHh---CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcC
Confidence 345666666666643 554 4567777777777 378888888887764 5663 4445555555551248
Q ss_pred CHHHHHHHHHHHHhhCCCC-CCcHHHHhHHHHhhCCcHHHHHHHHHHh
Q 007519 517 NAEIAEHAAKRLLELDPLN-APAHVVLCNIYAASGRHVEEHKLRMDMG 563 (600)
Q Consensus 517 ~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 563 (600)
+.+.+.+.+++++...|.. |. +.+...+.-++|..+++.+.
T Consensus 255 d~~~a~~~L~kAL~a~p~~~P~------~~lan~~~q~eA~~LL~~~~ 296 (301)
T 3u64_A 255 NRAGFDEALDRALAIDPESVPH------NKLLVILSQKRARWLKAHVQ 296 (301)
T ss_dssp CHHHHHHHHHHHHHCCGGGCSS------CHHHHHHHHHHHHHHHHTHH
T ss_pred CHHHHHHHHHHHHcCCCCCCCC------hhHHHHHHHHHHHHHHHHhH
Confidence 8888888888888877732 33 12233334456666555443
No 235
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.06 E-value=1.2 Score=36.51 Aligned_cols=19 Identities=11% Similarity=-0.073 Sum_probs=9.4
Q ss_pred HHHHhcCChHHHHHHHhcC
Q 007519 375 SMYAKCGVIDNAYNIFSNM 393 (600)
Q Consensus 375 ~~~~~~~~~~~A~~~~~~~ 393 (600)
..+.-.|+++++.++|.+.
T Consensus 97 ~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 97 LNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHHC
Confidence 3344455555555555443
No 236
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=94.99 E-value=0.15 Score=38.97 Aligned_cols=90 Identities=14% Similarity=-0.030 Sum_probs=59.6
Q ss_pred chHHHHHHHHHHHhhcCCCCCcchHHHHHHHHhhcCChHH---HHHHHHhCC-CC-C-CHHHHHH-HHHHHhhhhCCHHH
Q 007519 448 LVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKE---AEEFVLRLP-FE-P-DHRIWGA-LLGACGFCEGNAEI 520 (600)
Q Consensus 448 ~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~-~~-p-~~~~~~~-l~~~~~~~~g~~~~ 520 (600)
....+.+.|.+.... + .|+..+--.++++++++..... ++.+++.+. .. | ...-+.. +.-++. +.|++++
T Consensus 16 ~l~~~~~~y~~e~~~-~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~y-klg~Y~~ 92 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAA-G-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNY-RLKEYEK 92 (126)
T ss_dssp HHHHHHHHHHHHHHH-S-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHH-HTTCHHH
T ss_pred HHHHHHHHHHHHhcc-C-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH-HhhhHHH
Confidence 344555556555443 2 2667777778888888886665 777777754 22 4 2333333 333555 8999999
Q ss_pred HHHHHHHHHhhCCCCCCcHH
Q 007519 521 AEHAAKRLLELDPLNAPAHV 540 (600)
Q Consensus 521 a~~~~~~~~~~~p~~~~~~~ 540 (600)
|.+.++.+++.+|+|..+..
T Consensus 93 A~~~~~~lL~~eP~n~QA~~ 112 (126)
T 1nzn_A 93 ALKYVRGLLQTEPQNNQAKE 112 (126)
T ss_dssp HHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHH
Confidence 99999999999996654443
No 237
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=94.98 E-value=0.12 Score=41.24 Aligned_cols=86 Identities=15% Similarity=0.085 Sum_probs=60.4
Q ss_pred hHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccC---chHHHHHHHHHHHhhcCCCC--CcchHHHHHHHHhhcCChHHH
Q 007519 414 ANETLKVFESMLESGTHPNSVTFLGILSACSHAG---LVSRGWELFNAMFDVYKIQP--GPEHYVSMINLLGRAGKIKEA 488 (600)
Q Consensus 414 ~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A 488 (600)
...+.+-|.+..+.| .++..+.-.+..++++.+ ++++++.+++.+.+. . .| ....+..|+-+|.+.|++++|
T Consensus 14 l~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~-~-~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPK-G-SKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH-S-CHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-C-CccchHHHHHHHHHHHHHccCHHHH
Confidence 345556666666555 366666666667777776 677888888888875 2 25 366777788888999999999
Q ss_pred HHHHHhCC-CCCCHH
Q 007519 489 EEFVLRLP-FEPDHR 502 (600)
Q Consensus 489 ~~~~~~~~-~~p~~~ 502 (600)
.+.++.+. ..|+..
T Consensus 91 ~~y~~~lL~ieP~n~ 105 (152)
T 1pc2_A 91 LKYVRGLLQTEPQNN 105 (152)
T ss_dssp HHHHHHHHHHCTTCH
T ss_pred HHHHHHHHhcCCCCH
Confidence 99988864 566443
No 238
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=94.67 E-value=2.4 Score=38.17 Aligned_cols=219 Identities=11% Similarity=0.049 Sum_probs=119.3
Q ss_pred HhccCCCCCcchHHHHHHHHHcCCChhHHHHHhhhcCCCChhhHHHHHHHHHhcCCh----HHHHHHhhc--CCCCCcee
Q 007519 33 LFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWTAMICGLADAGRV----CEARKLFEE--MPERNVVS 106 (600)
Q Consensus 33 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~----~~A~~~~~~--~~~~~~~~ 106 (600)
+.+.+..++...-...+.++.+.|..+....+.+.+..++..+-...+.++.+.|.. .....++.. ..+++...
T Consensus 28 L~~~L~~~~~~vr~~A~~~L~~~~~~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~~~~l~~~L~~~~~~d~~~~v 107 (280)
T 1oyz_A 28 LFRLLDDHNSLKRISSARVLQLRGGQDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCEDNVFNILNNMALNDKSACV 107 (280)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHHHHHHHHHHHHHHCSCHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHccCCchHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccchHHHHHHHHHHhcCCCHHH
Confidence 334444566665556666666666544444444444456666666666777766632 233334432 12366666
Q ss_pred HHHHHHHHHHCCC-----hhHHHHHhhc-CCCCCcccHHHHHHHHHhcCCHhHHHHHHHhcccCCchhHHHHHHHHHhcC
Q 007519 107 WNSMVVGLIRNGE-----LNEARKVFNS-MPIKNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAG 180 (600)
Q Consensus 107 ~~~l~~~~~~~~~-----~~~a~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g 180 (600)
....+.++...+. ...+...+.. +..++...-...+.++...|+.+....+.+.+.+++..+....+.++...|
T Consensus 108 r~~a~~aL~~l~~~~~~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~ 187 (280)
T 1oyz_A 108 RATAIESTAQRCKKNPIYSPKIVEQSQITAFDKSTNVRRATAFAISVINDKATIPLLINLLKDPNGDVRNWAAFAININK 187 (280)
T ss_dssp HHHHHHHHHHHHHHCGGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC---CCHHHHHHHHTCSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhccCCcccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhhc
Confidence 6666666666541 2344444433 445777777777777877777554444555555677666666666666655
Q ss_pred -ChhHHH-HHHccCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHhcCChhhHHHHh
Q 007519 181 -EVEEGY-CLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLF 258 (600)
Q Consensus 181 -~~~~A~-~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 258 (600)
+...+. .+...+..++...-...+.++.+.|+.. +...+..... .++ .-...+.++.+.|+. .+...+
T Consensus 188 ~~~~~~~~~L~~~l~d~~~~vR~~A~~aL~~~~~~~-~~~~L~~~l~------d~~--vr~~a~~aL~~i~~~-~~~~~L 257 (280)
T 1oyz_A 188 YDNSDIRDCFVEMLQDKNEEVRIEAIIGLSYRKDKR-VLSVLCDELK------KNT--VYDDIIEAAGELGDK-TLLPVL 257 (280)
T ss_dssp CCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTCGG-GHHHHHHHHT------SSS--CCHHHHHHHHHHCCG-GGHHHH
T ss_pred cCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCHh-hHHHHHHHhc------Ccc--HHHHHHHHHHhcCch-hhhHHH
Confidence 123333 3444445567667777777788877654 4444444443 123 223445666666764 344444
Q ss_pred ccc
Q 007519 259 DTV 261 (600)
Q Consensus 259 ~~~ 261 (600)
..+
T Consensus 258 ~~~ 260 (280)
T 1oyz_A 258 DTM 260 (280)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
No 239
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=94.53 E-value=4.6 Score=40.96 Aligned_cols=371 Identities=9% Similarity=-0.029 Sum_probs=194.8
Q ss_pred HHhcCCHhHHHHHHHhcccCCchhHHHHHHHHHh--cCChhHHHHHHccCCC-CCc-chHHHHHHHHHhcCChhHHHHHH
Q 007519 145 YVECCMMGEAIVLFEEMEERNVVTWTSMISGYCR--AGEVEEGYCLFRRMPR-KNV-VSWTAMIGGFAWNGFHKESLLLF 220 (600)
Q Consensus 145 ~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~-~~~-~~~~~li~~~~~~~~~~~a~~~~ 220 (600)
..+.|++..+..+...+..-....|...-..-.. .....+....+++-.. |-. ..-...+..+.+.+++...+..+
T Consensus 16 a~~~~~~~~~~~l~~~l~~~pL~~yl~y~~l~~~l~~~~~~ev~~Fl~~~~~~p~~~~Lr~~~l~~l~~~~~w~~~l~~~ 95 (618)
T 1qsa_A 16 AWDNRQMDVVEQMMPGLKDYPLYPYLEYRQITDDLMNQPAVTVTNFVRANPTLPPARTLQSRFVNELARREDWRGLLAFS 95 (618)
T ss_dssp HHHTTCHHHHHHHSGGGTTSTTHHHHHHHHHHHTGGGCCHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHC
T ss_pred HHHCCCHHHHHHHHHhhcCCCcHHHHHHHHHHhCcccCCHHHHHHHHHHCCCChhHHHHHHHHHHHHHhCCCHHHHHHhc
Confidence 3456888888888776643222222221111122 2245666666666543 111 22344556677778877666643
Q ss_pred HHHHhhhcCCCCCChhhHHHHHHHHHhcCChhhHHHHhcccC---CCCchhHHHHHHHHHhcCChHHHHHHHhhCCCCCh
Q 007519 221 IEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVP---VRDEISWTSMIDGYLSVGQVSNAYYLFHNMPDRDA 297 (600)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 297 (600)
. ..+.+...-.....+....|+..+|......+= ...+..+..++..+.+.|.+...
T Consensus 96 ~--------~~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~~p~~c~~l~~~~~~~g~lt~~------------ 155 (618)
T 1qsa_A 96 P--------EKPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPNACDKLFSVWRASGKQDPL------------ 155 (618)
T ss_dssp C--------SCCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCCTHHHHHHHHHHHTTCSCHH------------
T ss_pred c--------CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHCCCCCHH------------
Confidence 2 123344444556677788888766655444332 34566677788777776655332
Q ss_pred hhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHH-HHHHHHHhcccchhhhHHHHHHHhhhcCCCchh---HHHHH
Q 007519 298 VAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATF-SVLFGAAGATANIDLGRQIHCVLMKTESESDLI---LENCL 373 (600)
Q Consensus 298 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l 373 (600)
..-.-+......|+...|..+... +.++...+ ..++....+..+ +...... ..++.. .+...
T Consensus 156 -~~~~R~~~al~~~~~~~a~~l~~~-----l~~~~~~~a~~~~al~~~p~~---~~~~~~~-----~~~~~~~~~~~~~~ 221 (618)
T 1qsa_A 156 -AYLERIRLAMKAGNTGLVTVLAGQ-----MPADYQTIASAIISLANNPNT---VLTFART-----TGATDFTRQMAAVA 221 (618)
T ss_dssp -HHHHHHHHHHHTTCHHHHHHHHHT-----CCGGGHHHHHHHHHHHHCGGG---HHHHHHH-----SCCCHHHHHHHHHH
T ss_pred -HHHHHHHHHHHCCCHHHHHHHHHh-----CCHHHHHHHHHHHHHHhChHh---HHHHHhc-----cCCChhhHHHHHHH
Confidence 122234556677888877766543 23443322 223333222222 2222111 122211 22222
Q ss_pred HHHHHhcCChHHHHHHHhcCC---CCChh----hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhccc
Q 007519 374 ISMYAKCGVIDNAYNIFSNMV---SRDLV----SWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHA 446 (600)
Q Consensus 374 ~~~~~~~~~~~~A~~~~~~~~---~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 446 (600)
+.-+.+ .+.+.|...+.... ..+.. .+..+.......+...++...+...... .++.......+....+.
T Consensus 222 ~~rlar-~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~e~~~r~Alr~ 298 (618)
T 1qsa_A 222 FASVAR-QDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR--SQSTSLIERRVRMALGT 298 (618)
T ss_dssp HHHHHH-HCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT--CCCHHHHHHHHHHHHHH
T ss_pred HHHHHh-cCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc--CCChHHHHHHHHHHHHC
Confidence 333333 47899999987664 12222 2233333334445356677777765543 34444444444445577
Q ss_pred CchHHHHHHHHHHHhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHhhhhCCHHHHHHHHH
Q 007519 447 GLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLPFEPDHRIWGALLGACGFCEGNAEIAEHAAK 526 (600)
Q Consensus 447 g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~g~~~~a~~~~~ 526 (600)
|+++.|.+.|+.+... ......-..-++.++...|+.++|..+|..+-... +|..++.+- +.|.... .
T Consensus 299 ~d~~~a~~~~~~l~~~--~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~~---~fYg~lAa~--~Lg~~~~-~---- 366 (618)
T 1qsa_A 299 GDRRGLNTWLARLPME--AKEKDEWRYWQADLLLERGREAEAKEILHQLMQQR---GFYPMVAAQ--RIGEEYE-L---- 366 (618)
T ss_dssp TCHHHHHHHHHHSCTT--GGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC---SHHHHHHHH--HTTCCCC-C----
T ss_pred CCHHHHHHHHHHcccc--ccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcCC---ChHHHHHHH--HcCCCCC-C----
Confidence 9999999999988642 11134445667888899999999999998875322 333333322 2232100 0
Q ss_pred HHHhhCCCCC-----CcHHHHhHHHHhhCCcHHHHHHHHHHhh
Q 007519 527 RLLELDPLNA-----PAHVVLCNIYAASGRHVEEHKLRMDMGL 564 (600)
Q Consensus 527 ~~~~~~p~~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 564 (600)
......+... ......+..+...|...+|...+..+.+
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~ 409 (618)
T 1qsa_A 367 KIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVK 409 (618)
T ss_dssp CCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CCCCCChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHh
Confidence 0000111011 1123445667788999999886666543
No 240
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=94.27 E-value=0.12 Score=38.51 Aligned_cols=64 Identities=6% Similarity=-0.018 Sum_probs=33.4
Q ss_pred HHHHHHhcccCchHHHHHHHHHHHhhcCC-----CCCcchHHHHHHHHhhcCChHHHHHHHHhCC-CCCC
Q 007519 437 LGILSACSHAGLVSRGWELFNAMFDVYKI-----QPGPEHYVSMINLLGRAGKIKEAEEFVLRLP-FEPD 500 (600)
Q Consensus 437 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-----~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~ 500 (600)
..+...+...|+++.|...++.+.+...- .+...++..|+.+|.+.|++++|...++++. ..|+
T Consensus 9 ~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~ 78 (104)
T 2v5f_A 9 FELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPE 78 (104)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC
Confidence 34444455555555555555555443210 1124455666666666666666666666553 4443
No 241
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=94.16 E-value=0.15 Score=40.00 Aligned_cols=101 Identities=10% Similarity=0.119 Sum_probs=65.7
Q ss_pred CChhHHHHHHHHhcccCch------HHHHHHHHHHHhhcCCCCCc-chHHHHHHH------HhhcCChHHHHHHHHhCC-
Q 007519 431 PNSVTFLGILSACSHAGLV------SRGWELFNAMFDVYKIQPGP-EHYVSMINL------LGRAGKIKEAEEFVLRLP- 496 (600)
Q Consensus 431 p~~~~~~~l~~~~~~~g~~------~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~------~~~~g~~~~A~~~~~~~~- 496 (600)
-|..+|...+....+.|+. ++.+++|+++.. .++|+. ..|...+.. +...++.++|.++|+.+.
T Consensus 11 ~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia--~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 11 NNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIE--ALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARA 88 (161)
T ss_dssp CSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHH--HSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHH--cCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 3556777777777777888 888889998887 455542 222222211 234578888888887763
Q ss_pred C-CCCHHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCC
Q 007519 497 F-EPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPL 534 (600)
Q Consensus 497 ~-~p~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~ 534 (600)
. +-=...|.....--. ++|+...|.+++.+++.+.|.
T Consensus 89 ~hKkFAKiwi~~AqFEi-Rqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 89 NCKKFAFVHISFAQFEL-SQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp HCTTBHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHTTCB
T ss_pred HhHHHHHHHHHHHHHHH-HcccHHHHHHHHHHHhccCCC
Confidence 1 111445555544445 788888888888888888874
No 242
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=93.82 E-value=0.93 Score=35.64 Aligned_cols=113 Identities=11% Similarity=0.163 Sum_probs=76.5
Q ss_pred CCChhhHHHHHHHHHhcCCh------HHHHHHHHHHHHcCCCCChh----HHHHHH---HHhcccCchHHHHHHHHHHHh
Q 007519 395 SRDLVSWNSMVMGFSHHGLA------NETLKVFESMLESGTHPNSV----TFLGIL---SACSHAGLVSRGWELFNAMFD 461 (600)
Q Consensus 395 ~~~~~~~~~l~~~~~~~~~~------~~a~~~~~~m~~~~~~p~~~----~~~~l~---~~~~~~g~~~~a~~~~~~~~~ 461 (600)
+.|..+|-..+...-+.|+. ++..++|++.... ++|+.. .|..+. ..+...++.++|.++|+.+..
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARA 88 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 56778888888888888888 8888888888775 677542 111111 112344889999999998876
Q ss_pred hcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHH
Q 007519 462 VYKIQPGPEHYVSMINLLGRAGKIKEAEEFVLRLP-FEP-DHRIWGALLGA 510 (600)
Q Consensus 462 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~ 510 (600)
. .-.. ..+|...+..-.+.|++..|.+++.+.. ..| +...+...+..
T Consensus 89 ~-hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~a~~n 137 (161)
T 4h7y_A 89 N-CKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEIALRN 137 (161)
T ss_dssp H-CTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHHHHHH
T ss_pred H-hHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHHHHHh
Confidence 5 3233 7777777788889999999999997753 334 23344444443
No 243
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.28 E-value=2.2 Score=41.48 Aligned_cols=143 Identities=9% Similarity=0.002 Sum_probs=69.7
Q ss_pred CChhHHHHHhhcCCC---------CCcccHHHHHHHHHhcCCHhHHHHHHHhcccCC---chhHHHHH----HHHHhcCC
Q 007519 118 GELNEARKVFNSMPI---------KNVISWNAMIAGYVECCMMGEAIVLFEEMEERN---VVTWTSMI----SGYCRAGE 181 (600)
Q Consensus 118 ~~~~~a~~~~~~~~~---------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~l~----~~~~~~g~ 181 (600)
|++++|++.+-.+.+ ........++..|...|+++...+.+..+.+.- ......++ ........
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~~ 109 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKS 109 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHCT
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCc
Confidence 567777665533321 123345566677777788777666555443211 11122222 22222232
Q ss_pred hh--HHHHHHccCCC---CC-------cchHHHHHHHHHhcCChhHHHHHHHHHHhhhcCCCCCC---hhhHHHHHHHHH
Q 007519 182 VE--EGYCLFRRMPR---KN-------VVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCN---VQSCNSMINGYI 246 (600)
Q Consensus 182 ~~--~A~~~~~~~~~---~~-------~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~ 246 (600)
.+ .-..+.+.+.. .- ......|...+...|++.+|..++.++... ..|..+. ...+...++.|.
T Consensus 110 ~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~E-t~~~~~~~~kve~~l~q~rl~l 188 (445)
T 4b4t_P 110 LDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVE-TYGSMEMSEKIQFILEQMELSI 188 (445)
T ss_dssp THHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-HCSSSCHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH-HHhcccHHHHHHHHHHHHHHHH
Confidence 22 22233333321 11 112345666677777777777777776543 1121111 234555556666
Q ss_pred hcCChhhHHHHhccc
Q 007519 247 RFGRLEEAQNLFDTV 261 (600)
Q Consensus 247 ~~~~~~~a~~~~~~~ 261 (600)
..+++.+|..++.++
T Consensus 189 ~~~d~~~a~~~~~ki 203 (445)
T 4b4t_P 189 LKGDYSQATVLSRKI 203 (445)
T ss_dssp HHTCHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHH
Confidence 666666666665554
No 244
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=93.27 E-value=0.2 Score=40.17 Aligned_cols=128 Identities=5% Similarity=0.023 Sum_probs=66.7
Q ss_pred CCCCccchhHHHHHHHhcCChhhHHHHhccCCC-----CCc-------chHHHHHHHHHcCCChhHHHHHhhhcCC----
Q 007519 7 PKSLVVHLTSSITKYSKRGFIDEAKALFQLMPQ-----RNV-------VSYNAMLSGFLQNGRLSEARRLFEEMPE---- 70 (600)
Q Consensus 7 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~-------~~~~~l~~~~~~~~~~~~A~~~~~~~~~---- 70 (600)
|+.+...+..-++.+...|.++.|+-+.+.+.. |+. .++..+.+++...|++..|...|++.++
T Consensus 16 ~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~ 95 (167)
T 3ffl_A 16 PRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKA 95 (167)
T ss_dssp -----CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHC
T ss_pred CCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHH
Confidence 444555666777788888888888877777542 332 1456667778888888888888887542
Q ss_pred --CChhhHHHHHHHHHhcCChHHHHHHhhcCCCCCceeHHHHHHHHHHCCChhHHHHHhhcCCC--CCcccHHHHHH
Q 007519 71 --RNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPI--KNVISWNAMIA 143 (600)
Q Consensus 71 --~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~ 143 (600)
.+..+...+.. ...... -+. ...+.+....+..++.+.+++++|+.+++.++. .++..-..|.+
T Consensus 96 l~k~~s~~~~~~~----~ss~p~---s~~--~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~Rt~kvnm~Lak 163 (167)
T 3ffl_A 96 LSKTSKVRPSTGN----SASTPQ---SQC--LPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSRQRTPKINMLLAN 163 (167)
T ss_dssp C---------------------------C--CCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGGCCHHHHHHHHH
T ss_pred HhcCCCccccccc----cCCCcc---ccc--ccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCchhcCHHHHHHHHH
Confidence 11111111100 000000 000 012233444567777777777777777777754 44444444433
No 245
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=93.12 E-value=4.7 Score=36.17 Aligned_cols=17 Identities=12% Similarity=-0.144 Sum_probs=6.2
Q ss_pred CCcchHHHHHHHHHhcC
Q 007519 195 KNVVSWTAMIGGFAWNG 211 (600)
Q Consensus 195 ~~~~~~~~li~~~~~~~ 211 (600)
++...-...+.++...|
T Consensus 140 ~~~~vR~~a~~aL~~~~ 156 (280)
T 1oyz_A 140 KSTNVRRATAFAISVIN 156 (280)
T ss_dssp SCHHHHHHHHHHHHTC-
T ss_pred CCHHHHHHHHHHHHhcC
Confidence 33333333344444433
No 246
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=92.76 E-value=2.6 Score=32.39 Aligned_cols=139 Identities=9% Similarity=-0.048 Sum_probs=79.7
Q ss_pred HhcCChhHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHhcCChhhHHHHhcccCCC-CchhHHHHHHHHHhcCChHHHH
Q 007519 208 AWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVR-DEISWTSMIDGYLSVGQVSNAY 286 (600)
Q Consensus 208 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~ 286 (600)
.-.|.+++..++..+.... .+..-||.++--....-+=+-..+.++.+-+- |. ..+|++....
T Consensus 18 ildG~v~qGveii~k~~~s------sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDi----------s~C~NlKrVi 81 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKS------STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDL----------DKCQNLKSVV 81 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHH------SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCG----------GGCSCTHHHH
T ss_pred HHhhhHHHHHHHHHHHcCC------CCccccceeeeecchhhchhHHHHHHHHHhhhcCc----------HhhhcHHHHH
Confidence 3456677777776666642 33445555555555555544444444444311 11 1223333333
Q ss_pred HHHhhCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhcccchhhhHHHHHHHhhhcCC
Q 007519 287 YLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESE 364 (600)
Q Consensus 287 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 364 (600)
..+-.+. .+....+..+..+..+|.-+.-.+++..+.. +.+|++..+..+..+|.+.|+..++.+++.++-+.|++
T Consensus 82 ~C~~~~n-~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 82 ECGVINN-TLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHTT-CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhc-chHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 3332222 2333455566677777877777777777544 24677777777777888888888888888877777764
No 247
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=92.42 E-value=13 Score=39.53 Aligned_cols=254 Identities=13% Similarity=0.090 Sum_probs=134.7
Q ss_pred HHHhcCChhHHHHHHccCCC----CCcc--hHHHHHHHHHhcCChhHHHHHHHHHHhhhcCCCC-----CChhhHHHHHH
Q 007519 175 GYCRAGEVEEGYCLFRRMPR----KNVV--SWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNN-----CNVQSCNSMIN 243 (600)
Q Consensus 175 ~~~~~g~~~~A~~~~~~~~~----~~~~--~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~~~l~~ 243 (600)
+....|+.++++.+++.... .+.. .-..+.-+....|..+++..++...... ++.+. +....-.++.-
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~-~~~~~~~~~~~~ir~gAaLGL 461 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVE-NSGTSGDEDVDVLLHGASLGI 461 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHH-HSSCCSCHHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcC-ccccccccccHHHHHHHHHHH
Confidence 45677888999999988764 1222 2223344455666666788888777653 11000 11111112222
Q ss_pred HH--HhcCChhhHHHHhcccC-CCCchhH--H--HHHHHHHhcCChHHHHHHHhhCCC-CChh--hHHHHHHHHHhCCCh
Q 007519 244 GY--IRFGRLEEAQNLFDTVP-VRDEISW--T--SMIDGYLSVGQVSNAYYLFHNMPD-RDAV--AWTAMISGLVQNELF 313 (600)
Q Consensus 244 ~~--~~~~~~~~a~~~~~~~~-~~~~~~~--~--~l~~~~~~~~~~~~A~~~~~~~~~-~~~~--~~~~li~~~~~~g~~ 313 (600)
++ .-.++ +++...+..+. ..+..+- . ++...+.-.|+-+....++..+.+ .+.. -.-.+.-++...|+.
T Consensus 462 Gla~~GS~~-eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~ 540 (963)
T 4ady_A 462 GLAAMGSAN-IEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQ 540 (963)
T ss_dssp HHHSTTCCC-HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCG
T ss_pred HHHhcCCCC-HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCCh
Confidence 22 22333 34444444443 3332221 1 233334455666666666655432 2222 223334455578899
Q ss_pred hHHHHHHHHHHHCCCCCChhHHHH---HHHHHhcccchhhhHHHHHHHhhhcCCCchhHHHHHHHHHHhcCChHHHHHHH
Q 007519 314 VEATYLFMEMRAHGVPPLNATFSV---LFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIF 390 (600)
Q Consensus 314 ~~a~~~~~~m~~~g~~p~~~~~~~---l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 390 (600)
+.+..+.+.+... .....-|.. +.-+|+..|+......++..+.... ..++.-...+.-++...|+.+.+.+++
T Consensus 541 e~~~~li~~L~~~--~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv 617 (963)
T 4ady_A 541 ELADDLITKMLAS--DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIV 617 (963)
T ss_dssp GGGHHHHHHHHHC--SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHT
T ss_pred HHHHHHHHHHHhC--CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHH
Confidence 9888888888764 222233332 3346788889888888888777542 223333333333444567777777887
Q ss_pred hcCC-CCChhhH--HHHHHHHHhcCCh-HHHHHHHHHHHHcCCCCChhHH
Q 007519 391 SNMV-SRDLVSW--NSMVMGFSHHGLA-NETLKVFESMLESGTHPNSVTF 436 (600)
Q Consensus 391 ~~~~-~~~~~~~--~~l~~~~~~~~~~-~~a~~~~~~m~~~~~~p~~~~~ 436 (600)
+.+. ..|..+- ..+..+....|.. .+++.++..+.. .++..+-
T Consensus 618 ~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~---D~d~~Vr 664 (963)
T 4ady_A 618 QLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK---DPVDFVR 664 (963)
T ss_dssp TTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT---CSSHHHH
T ss_pred HHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc---CCCHHHH
Confidence 7654 2333332 3333444444444 578888888864 4454433
No 248
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=92.35 E-value=0.49 Score=48.96 Aligned_cols=53 Identities=13% Similarity=-0.076 Sum_probs=48.5
Q ss_pred HHHhhhhCCHHHHHHHHHHHHhhCCCCCCcHHHHhHHHHhhCCcHHHHHHHHHH
Q 007519 509 GACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDM 562 (600)
Q Consensus 509 ~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 562 (600)
..|. ..|+++.|+.+.+++....|.+-.+|..|+.+|...|+++.|+-.+..+
T Consensus 345 ~FLl-~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 345 NFLL-NRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHH-HTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHh-ccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 3455 8899999999999999999999999999999999999999999987766
No 249
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=91.65 E-value=0.91 Score=36.46 Aligned_cols=27 Identities=15% Similarity=0.076 Sum_probs=17.6
Q ss_pred chHHHHHHHHhhcCChHHHHHHHHhCC
Q 007519 470 EHYVSMINLLGRAGKIKEAEEFVLRLP 496 (600)
Q Consensus 470 ~~~~~l~~~~~~~g~~~~A~~~~~~~~ 496 (600)
+.-.-+..+|.+.|++++|+.+++.++
T Consensus 123 Elkykia~C~~~l~~~~~Ai~~Le~Ip 149 (167)
T 3ffl_A 123 EVKYKLAECYTVLKQDKDAIAILDGIP 149 (167)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence 344446666677777777777777766
No 250
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=90.48 E-value=18 Score=40.17 Aligned_cols=143 Identities=14% Similarity=0.026 Sum_probs=86.1
Q ss_pred HHHHHHhcccchhhhHHHHHHHhhhcCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC----C----------------
Q 007519 337 VLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMVS----R---------------- 396 (600)
Q Consensus 337 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~---------------- 396 (600)
.++..+...+..+.+.++..... .++...-.+..++...|++++|.+.|.+... .
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~~-----~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~ 891 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWLN-----SDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEK 891 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHSC-----CCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHT
T ss_pred HHHHHHHHhhhHHHHHHHhhhcc-----CCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccc
Confidence 45555666666666665544322 2333334566778888899999888877631 0
Q ss_pred ------ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh----hHHHHHHHHhcccCchHHHHHHHHHHHhhcCCC
Q 007519 397 ------DLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNS----VTFLGILSACSHAGLVSRGWELFNAMFDVYKIQ 466 (600)
Q Consensus 397 ------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 466 (600)
-..-|..++..+.+.+.++.++++-+...+...+-+. ..|..++.++...|++++|...+-.+... .
T Consensus 892 ~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~---~ 968 (1139)
T 4fhn_B 892 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTT---P 968 (1139)
T ss_dssp TTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHS---S
T ss_pred ccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCH---H
Confidence 0123566777777788888887777766654211111 14566777778888888887777655432 1
Q ss_pred CCcchHHHHHHHHhhcCChHH
Q 007519 467 PGPEHYVSMINLLGRAGKIKE 487 (600)
Q Consensus 467 p~~~~~~~l~~~~~~~g~~~~ 487 (600)
--...+..|+..++..|..+.
T Consensus 969 ~r~~cLr~LV~~lce~~~~~~ 989 (1139)
T 4fhn_B 969 LKKSCLLDFVNQLTKQGKINQ 989 (1139)
T ss_dssp SCHHHHHHHHHHHHHHCCHHH
T ss_pred HHHHHHHHHHHHHHhCCChhh
Confidence 234456666666666655443
No 251
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=88.58 E-value=1.7 Score=33.24 Aligned_cols=86 Identities=15% Similarity=0.040 Sum_probs=57.5
Q ss_pred ChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccCchHH---HHHHHHHHHhhcCCCC--CcchHHHHHHHHhhcCChHH
Q 007519 413 LANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSR---GWELFNAMFDVYKIQP--GPEHYVSMINLLGRAGKIKE 487 (600)
Q Consensus 413 ~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~---a~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~ 487 (600)
....+.+-|.+....| .|+..+--.+..++.+..+... ++.+++.+.+. -.| .......|+-++.+.|++++
T Consensus 16 ~l~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~--~~p~~~Rd~lY~LAvg~yklg~Y~~ 92 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK--GSKEEQRDYVFYLAVGNYRLKEYEK 92 (126)
T ss_dssp HHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT--SCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHhhhHHH
Confidence 3445556666655555 3666655566667777665544 88888887763 224 35566678888899999999
Q ss_pred HHHHHHhCC-CCCCH
Q 007519 488 AEEFVLRLP-FEPDH 501 (600)
Q Consensus 488 A~~~~~~~~-~~p~~ 501 (600)
|.+.++.+. ..|+.
T Consensus 93 A~~~~~~lL~~eP~n 107 (126)
T 1nzn_A 93 ALKYVRGLLQTEPQN 107 (126)
T ss_dssp HHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHhCCCC
Confidence 999988864 55543
No 252
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=88.52 E-value=0.82 Score=43.62 Aligned_cols=49 Identities=18% Similarity=0.146 Sum_probs=28.1
Q ss_pred hhCCHHHHHHHHHHHHhhCCCCCCcHHHHhHHHHhhCCcHHHHHHHHHH
Q 007519 514 CEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDM 562 (600)
Q Consensus 514 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 562 (600)
..|+.++++..+++++..+|-+...+..++.++.+.|+..+|.+.++..
T Consensus 183 ~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~ 231 (388)
T 2ff4_A 183 ACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRV 231 (388)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5555555555555555555555555555556666666665555544443
No 253
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=88.51 E-value=7.7 Score=43.09 Aligned_cols=186 Identities=12% Similarity=0.078 Sum_probs=111.6
Q ss_pred HHHHHHHHHhcCChhhHHHHhcccCCCCchhHHHHHHHHHhcCChHHHHHHHhhCCC----C------------------
Q 007519 238 CNSMINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMPD----R------------------ 295 (600)
Q Consensus 238 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~------------------ 295 (600)
...++..+...+..+.+.++.... +.++...-.+..+|...|++++|...|.+... .
T Consensus 815 ~~~l~~~l~~~~~~~~~~~l~~~~-~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~ 893 (1139)
T 4fhn_B 815 VTELVEKLFLFKQYNACMQLIGWL-NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYH 893 (1139)
T ss_dssp HHHHHHHHHHHSCTTHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhc-cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccccc
Confidence 334566667777777776655444 44555555666777888888888888876532 0
Q ss_pred ----ChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCh----hHHHHHHHHHhcccchhhhHHHHHHHhhhcCCCch
Q 007519 296 ----DAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLN----ATFSVLFGAAGATANIDLGRQIHCVLMKTESESDL 367 (600)
Q Consensus 296 ----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 367 (600)
-..-|..++..+.+.+.++.++++-....+..-+-+. ..|..+++++...+++++|...+..+.....+ .
T Consensus 894 ~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r--~ 971 (1139)
T 4fhn_B 894 HQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLK--K 971 (1139)
T ss_dssp SCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC--H
T ss_pred ccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH--H
Confidence 1124677888888899999888888776654322221 14677888888999999998887665544332 2
Q ss_pred hHHHHHHHHHHhc------------CChHHHHHHHhcCC------CCChhhHHHHHHHHHhcCChHHH-HHHHHHHHH
Q 007519 368 ILENCLISMYAKC------------GVIDNAYNIFSNMV------SRDLVSWNSMVMGFSHHGLANET-LKVFESMLE 426 (600)
Q Consensus 368 ~~~~~l~~~~~~~------------~~~~~A~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~a-~~~~~~m~~ 426 (600)
.....|+...+.. |..++..+++..-- ...+.-|..|=.-+..+|++.+| .-+|+....
T Consensus 972 ~cLr~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~~R 1049 (1139)
T 4fhn_B 972 SCLLDFVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKLSR 1049 (1139)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHHHH
Confidence 3334455444443 33455555553221 11122344444445667777655 445555543
No 254
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=88.34 E-value=6.1 Score=34.72 Aligned_cols=127 Identities=13% Similarity=0.072 Sum_probs=67.4
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCCCcchHHHHHHHHhhcCChH
Q 007519 407 GFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMINLLGRAGKIK 486 (600)
Q Consensus 407 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 486 (600)
.+.+.|+.+++++.+..-.+.. +-|...-..++..+|-.|++++|.+-++.+.+. .|+...-..+..-+.++ +
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l---~p~~~~~a~~yr~lI~a---E 78 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL---FPEYLPGASQLRHLVKA---A 78 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHH---H
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh---CchhhHHHHHHHHHHHH---H
Confidence 4456677777777777666642 334444555667777888888888777777653 55432222121111111 1
Q ss_pred HHHH-HHHh--CC--CCCCHHHHHHHHHHHh-hhhCCHHHHHHHHHHHHhhCCCCCCcHH
Q 007519 487 EAEE-FVLR--LP--FEPDHRIWGALLGACG-FCEGNAEIAEHAAKRLLELDPLNAPAHV 540 (600)
Q Consensus 487 ~A~~-~~~~--~~--~~p~~~~~~~l~~~~~-~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 540 (600)
...+ +|.- .+ ......-...++.+.. ...|+.++|..+-.++++..|..+....
T Consensus 79 ~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~~G~~~ 138 (273)
T 1zbp_A 79 QARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFLAN 138 (273)
T ss_dssp HHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEEET
T ss_pred HHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcccCCCcC
Confidence 2221 2211 11 1112222333333322 1568888888888888887775555433
No 255
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=88.12 E-value=6.4 Score=40.82 Aligned_cols=53 Identities=9% Similarity=0.017 Sum_probs=45.0
Q ss_pred HHhcccCchHHHHHHHHHHHhhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHhCC
Q 007519 441 SACSHAGLVSRGWELFNAMFDVYKIQP-GPEHYVSMINLLGRAGKIKEAEEFVLRLP 496 (600)
Q Consensus 441 ~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 496 (600)
.-|...|+++.|+++-+++... .| +-.+|..|+.+|...|+++.|+-.++.+|
T Consensus 345 ~FLl~K~~~elAL~~Ak~AV~~---aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTSTEL---ALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH---CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHhccCcHHHHHHHHHHHHhc---CchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 3456789999999999988854 67 57899999999999999999999998886
No 256
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=87.72 E-value=1.6 Score=33.46 Aligned_cols=72 Identities=13% Similarity=0.024 Sum_probs=45.0
Q ss_pred CCCcchHHHHHHHHhhcCChH---HHHHHHHhCC-CCC-CHHH-HHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCCCc
Q 007519 466 QPGPEHYVSMINLLGRAGKIK---EAEEFVLRLP-FEP-DHRI-WGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPA 538 (600)
Q Consensus 466 ~p~~~~~~~l~~~~~~~g~~~---~A~~~~~~~~-~~p-~~~~-~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 538 (600)
.|++.+--.++++++++...+ +++.+++++- ..| ...- +-.+.-++. +.|+++.|.+..+.+++.+|+|..+
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~y-klgdY~~Ar~y~d~lL~~eP~N~QA 114 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCY-KLGEYSMAKRYVDTLFEHERNNKQV 114 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHTTCTTCHHH
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHH-HhhhHHHHHHHHHHHHhhCCCCHHH
Confidence 456666666777777776543 4556665542 334 2333 333444555 8888888888888888888865433
No 257
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=87.56 E-value=2.2 Score=30.74 Aligned_cols=63 Identities=19% Similarity=0.193 Sum_probs=46.3
Q ss_pred ChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCCCcchHHHHHH
Q 007519 413 LANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMIN 477 (600)
Q Consensus 413 ~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 477 (600)
+.-+..+-++.+....+.|++......+++|-+.+++..|.++++-++.+ ..+...+|..++.
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K--~~~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK--AGPHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--hcCchhhHHHHHH
Confidence 45566677777777778888888888888888888888888888888765 3333445666553
No 258
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=87.04 E-value=6.1 Score=28.28 Aligned_cols=58 Identities=17% Similarity=0.169 Sum_probs=38.3
Q ss_pred HHHhcCChHHHHHHHhhCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHH
Q 007519 275 GYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATF 335 (600)
Q Consensus 275 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~ 335 (600)
.+...|++++|..+.+.+..||...|.++.. .+.|-.+++...+.++..+| .|....|
T Consensus 48 SLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~sg-~p~~q~F 105 (115)
T 2uwj_G 48 SLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGGSS-DPALADF 105 (115)
T ss_dssp HHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHTCS-SHHHHHH
T ss_pred HHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC-CHHHHHH
Confidence 4556777777777777777777777766543 46777777777777777665 4444444
No 259
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=87.04 E-value=6.1 Score=30.79 Aligned_cols=70 Identities=13% Similarity=0.022 Sum_probs=48.4
Q ss_pred CCCcchHHHHHHHHhhcCChH---HHHHHHHhCC-CCC-CHHHHHH-HHHHHhhhhCCHHHHHHHHHHHHhhCCCCC
Q 007519 466 QPGPEHYVSMINLLGRAGKIK---EAEEFVLRLP-FEP-DHRIWGA-LLGACGFCEGNAEIAEHAAKRLLELDPLNA 536 (600)
Q Consensus 466 ~p~~~~~~~l~~~~~~~g~~~---~A~~~~~~~~-~~p-~~~~~~~-l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 536 (600)
.|+..+--.+++++.++...+ ++..+++.+- ..| +..-+.. +.-++. +.|++++|.++.+.+++.+|+|.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~y-kl~~Y~~Ar~y~d~lL~~eP~n~ 111 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCY-KLGEYSMAKRYVDTLFEHERNNK 111 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHTCCCCH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHH-HhhhHHHHHHHHHHHHhcCCCcH
Confidence 467777777888888877554 4566666653 334 3444433 334566 89999999999999999999554
No 260
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=86.93 E-value=5 Score=28.76 Aligned_cols=58 Identities=16% Similarity=0.150 Sum_probs=37.7
Q ss_pred HHHhcCChHHHHHHHhhCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHH
Q 007519 275 GYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATF 335 (600)
Q Consensus 275 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~ 335 (600)
.+...|++++|..+.+.+..||...|.++.. .+.|..+++...+.++..+| .|....|
T Consensus 49 SLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~sg-~p~~q~F 106 (116)
T 2p58_C 49 SLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLARSQ-DPRIQTF 106 (116)
T ss_dssp HHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTTCC-CHHHHHH
T ss_pred HHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC-CHHHHHH
Confidence 4566777777777777777777777766553 35666777777776666665 4443333
No 261
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=86.43 E-value=20 Score=32.88 Aligned_cols=111 Identities=15% Similarity=0.166 Sum_probs=67.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHH----HHHHHHcCCCCChhHHHHHHHHhcc
Q 007519 370 ENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKV----FESMLESGTHPNSVTFLGILSACSH 445 (600)
Q Consensus 370 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~----~~~m~~~~~~p~~~~~~~l~~~~~~ 445 (600)
|.++..=|.+++++++|.+++-. -...+.+.|+...+-++ ++-..+.+++++......++..+..
T Consensus 38 ~RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~ 106 (336)
T 3lpz_A 38 TRLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRL 106 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Confidence 34555567788888888877543 23445556666555444 3555556778887777666666544
Q ss_pred cCc--hHH---HHHHHHHHHhhcCCCC--CcchHHHHHHHHhhcCChHHHHHHH
Q 007519 446 AGL--VSR---GWELFNAMFDVYKIQP--GPEHYVSMINLLGRAGKIKEAEEFV 492 (600)
Q Consensus 446 ~g~--~~~---a~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~ 492 (600)
... .+. ..+.+..-.+ .+-.| ++.....++..|.+.|++.+|+..|
T Consensus 107 ~~~~~p~r~~fi~~ai~WS~~-~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 107 FQPGEPVRKRFVKEMIDWSKK-FGDYPAGDPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp SCTTCHHHHHHHHHHHHHHHH-HSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHHHhh-cCCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 332 111 1111222222 23223 6778888999999999999998776
No 262
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=84.49 E-value=23 Score=32.08 Aligned_cols=166 Identities=10% Similarity=0.016 Sum_probs=92.2
Q ss_pred HHHHHHHhcCChHHHHHHHhhCCCCChhhHHHHHHHHHhCCChhHHHH----HHHHHHHCCCCCChhHHHHHHHHHhccc
Q 007519 271 SMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATY----LFMEMRAHGVPPLNATFSVLFGAAGATA 346 (600)
Q Consensus 271 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~----~~~~m~~~g~~p~~~~~~~l~~~~~~~~ 346 (600)
++..=|.+.+++++|++++.. -...+.+.|++..|-+ +.+-..+.+++++......++..+....
T Consensus 38 tl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~p 106 (312)
T 2wpv_A 38 TIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAELD 106 (312)
T ss_dssp HHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCC
Confidence 444555556666666655432 2233455666554444 4555666788888888887777765533
Q ss_pred ch-----hhhHHHHHHHhhhcC--CCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHhc---CChHH
Q 007519 347 NI-----DLGRQIHCVLMKTES--ESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHH---GLANE 416 (600)
Q Consensus 347 ~~-----~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~ 416 (600)
.- .-......+..+.|. .-++.....+...|.+.|++.+|+..|-.....+...+..++.-+... |...+
T Consensus 107 ~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~~~e 186 (312)
T 2wpv_A 107 PSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIEDST 186 (312)
T ss_dssp TTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCCHHH
T ss_pred CCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCCcch
Confidence 21 222233333333322 236777888889999999999998877643333455554444433333 33222
Q ss_pred HHHHHHHHHHcCCCCChhHHHHHHHHhcccCchHHHHHHHHHHHhh
Q 007519 417 TLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDV 462 (600)
Q Consensus 417 a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 462 (600)
+-- ..-..++ -|.-.|+...|..++....+.
T Consensus 187 ~dl--------------f~~RaVL-~yL~l~n~~~A~~~~~~f~~~ 217 (312)
T 2wpv_A 187 VAE--------------FFSRLVF-NYLFISNISFAHESKDIFLER 217 (312)
T ss_dssp HHH--------------HHHHHHH-HHHHTTBHHHHHHHHHHHHHH
T ss_pred HHH--------------HHHHHHH-HHHHhcCHHHHHHHHHHHHHH
Confidence 211 1111222 234567888888887776543
No 263
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=84.36 E-value=5 Score=38.16 Aligned_cols=67 Identities=13% Similarity=0.114 Sum_probs=40.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccCchHHHHHHHHHHHh----hcCCCCCcch
Q 007519 404 MVMGFSHHGLANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFD----VYKIQPGPEH 471 (600)
Q Consensus 404 l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~p~~~~ 471 (600)
++..+...|++++++..+..+... -+-+...+..++.++.+.|+..+|.+.|+.+.+ ..|+.|++.+
T Consensus 177 ~~~~~l~~g~~~~a~~~l~~~~~~-~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 177 KAEAEIACGRASAVIAELEALTFE-HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 445555666666666666666554 244556666666666667776666666665543 2366665443
No 264
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=83.98 E-value=26 Score=32.12 Aligned_cols=166 Identities=11% Similarity=0.034 Sum_probs=93.6
Q ss_pred HHHHHHHHhcCChHHHHHHHhhCCCCChhhHHHHHHHHHhCCChhHHHH----HHHHHHHCCCCCChhHHHHHHHHHhcc
Q 007519 270 TSMIDGYLSVGQVSNAYYLFHNMPDRDAVAWTAMISGLVQNELFVEATY----LFMEMRAHGVPPLNATFSVLFGAAGAT 345 (600)
Q Consensus 270 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~----~~~~m~~~g~~p~~~~~~~l~~~~~~~ 345 (600)
.++..=|.+.+++++|++++.. -...+.+.|+...+-+ +++-+.+.++++|..+...++..+...
T Consensus 39 RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~ 107 (336)
T 3lpz_A 39 RLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLF 107 (336)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC
Confidence 3445556667777777766432 2334555666554433 445666778888888888888777655
Q ss_pred cchh-----hhHHHHHHHhhhc--CCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHH
Q 007519 346 ANID-----LGRQIHCVLMKTE--SESDLILENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETL 418 (600)
Q Consensus 346 ~~~~-----~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 418 (600)
..-+ -..+...+-.+.| ..-++.....+...|.+.+++.+|+..|-....+++..+..++.-+...+...++
T Consensus 108 ~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~e~- 186 (336)
T 3lpz_A 108 QPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESHTA- 186 (336)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGGGH-
T ss_pred CCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCccH-
Confidence 4321 1222233333333 2336777788889999999999999888533333345665554444333322111
Q ss_pred HHHHHHHHcCCCCChhHHHHHHHHhcccCchHHHHHHHHHHHh
Q 007519 419 KVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFD 461 (600)
Q Consensus 419 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 461 (600)
+...-..++ -|.-.+++..|..+++...+
T Consensus 187 -------------dlfiaRaVL-~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 187 -------------PLYCARAVL-PYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp -------------HHHHHHHHH-HHHHTTCHHHHHHHHHHHHH
T ss_pred -------------HHHHHHHHH-HHHHhCCHHHHHHHHHHHHH
Confidence 111122222 34456777777776665554
No 265
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=83.76 E-value=6.1 Score=30.76 Aligned_cols=68 Identities=3% Similarity=-0.216 Sum_probs=50.8
Q ss_pred CCCCHHHHHHHHHHHhhhhC---CHHHHHHHHHHHHhhCCC-CCCcHHHHhHHHHhhCCcHHHHHHHHHHhhc
Q 007519 497 FEPDHRIWGALLGACGFCEG---NAEIAEHAAKRLLELDPL-NAPAHVVLCNIYAASGRHVEEHKLRMDMGLK 565 (600)
Q Consensus 497 ~~p~~~~~~~l~~~~~~~~g---~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 565 (600)
..|+..+--.+..++. ++. +..+++.+++.+....|. .......|+-++.+.|++++|.++.+.+.+.
T Consensus 35 ~~vs~~t~F~YAw~Lv-~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~ 106 (144)
T 1y8m_A 35 PTATIQSRFNYAWGLI-KSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 106 (144)
T ss_dssp TTSCHHHHHHHHHHHH-HSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred CCCcHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 3566665555555555 444 567899999999998884 3466778899999999999999977766543
No 266
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=83.62 E-value=30 Score=32.66 Aligned_cols=57 Identities=14% Similarity=-0.009 Sum_probs=34.6
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHCCCCCChh-----HHHHHHHHHhcccchhhhHHHHHHH
Q 007519 302 AMISGLVQNELFVEATYLFMEMRAHGVPPLNA-----TFSVLFGAAGATANIDLGRQIHCVL 358 (600)
Q Consensus 302 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-----~~~~l~~~~~~~~~~~~a~~~~~~~ 358 (600)
.++..|...|++.+|..++.++.+.=-..|.. .+..-+..|...++...+...+...
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a 165 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSA 165 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 57788889999999998888887642122222 2233334455556666665555543
No 267
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=82.84 E-value=11 Score=27.17 Aligned_cols=63 Identities=10% Similarity=-0.032 Sum_probs=43.3
Q ss_pred ChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhcccchhhhHHHHHHHhhhcCCCchhHHHHHHH
Q 007519 312 LFVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLIS 375 (600)
Q Consensus 312 ~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 375 (600)
+.=++.+-++.+....+.|++......+++|.+.+++..|.++++-+...- .....+|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHHH
Confidence 344566777777777788888888888888888888888888887554322 222345655553
No 268
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=82.60 E-value=36 Score=32.87 Aligned_cols=185 Identities=9% Similarity=0.053 Sum_probs=103.5
Q ss_pred CChhHHHHHHHHHHHC-----CCCCChhHHHHHHHHHhcccchhhhHHHHHHHhhh-cCCCchh--HHHHHHHHHHhcCC
Q 007519 311 ELFVEATYLFMEMRAH-----GVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKT-ESESDLI--LENCLISMYAKCGV 382 (600)
Q Consensus 311 g~~~~a~~~~~~m~~~-----g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~--~~~~l~~~~~~~~~ 382 (600)
|+++.|++.+-.+.+. ...........++..|...++++...+.+..+.+. |...... +...++........
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~~ 109 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKS 109 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHCT
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCc
Confidence 4455555555444332 12333444555666666666666665555543332 2211111 11112222222222
Q ss_pred h--HHHHHHHhcCC---CC-------ChhhHHHHHHHHHhcCChHHHHHHHHHHHHc--CCCCC---hhHHHHHHHHhcc
Q 007519 383 I--DNAYNIFSNMV---SR-------DLVSWNSMVMGFSHHGLANETLKVFESMLES--GTHPN---SVTFLGILSACSH 445 (600)
Q Consensus 383 ~--~~A~~~~~~~~---~~-------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~--~~~p~---~~~~~~l~~~~~~ 445 (600)
. +.-..+.+... .. .......|...+...|++.+|..++..+... |..+. ...+...++.|..
T Consensus 110 ~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~ 189 (445)
T 4b4t_P 110 LDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSIL 189 (445)
T ss_dssp THHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 2 22233333332 11 1223456778888999999999999998643 22221 1345566788899
Q ss_pred cCchHHHHHHHHHHHhhc-CCC--CC--cchHHHHHHHHhhcCChHHHHHHHHhC
Q 007519 446 AGLVSRGWELFNAMFDVY-KIQ--PG--PEHYVSMINLLGRAGKIKEAEEFVLRL 495 (600)
Q Consensus 446 ~g~~~~a~~~~~~~~~~~-~~~--p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~ 495 (600)
.+++.+|..++.++.... ... |+ ...+...+..+...+++.+|.+.|.++
T Consensus 190 ~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~ 244 (445)
T 4b4t_P 190 KGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEI 244 (445)
T ss_dssp HTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 999999999998875321 112 22 345677888888999999998877665
No 269
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=82.44 E-value=8.7 Score=29.44 Aligned_cols=63 Identities=19% Similarity=0.193 Sum_probs=48.7
Q ss_pred ChHHHHHHHHHHHHcCCCCChhHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCCCcchHHHHHH
Q 007519 413 LANETLKVFESMLESGTHPNSVTFLGILSACSHAGLVSRGWELFNAMFDVYKIQPGPEHYVSMIN 477 (600)
Q Consensus 413 ~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 477 (600)
|.-+..+-++.+....+.|++......+.+|-+.+++..|.++|+-++.+ ..+...+|..+++
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K--~~~~~~iY~y~lq 130 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK--AGPHKEIYPYVIQ 130 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--cCCchhhHHHHHH
Confidence 44566677777777788899999999999999999999999999988875 3444556766654
No 270
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=82.19 E-value=6.7 Score=34.46 Aligned_cols=114 Identities=17% Similarity=0.117 Sum_probs=74.1
Q ss_pred HhcccCchHHHHHHHHHHHhhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHhCC-CCCCHHHHHHHHHHHhhhhCCHH
Q 007519 442 ACSHAGLVSRGWELFNAMFDVYKIQP-GPEHYVSMINLLGRAGKIKEAEEFVLRLP-FEPDHRIWGALLGACGFCEGNAE 519 (600)
Q Consensus 442 ~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l~~~~~~~~g~~~ 519 (600)
...+.|+++++++....-++. .| |...-..|+..||-.|+|++|.+-++... ..|+...-..+.....
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~---~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI------- 75 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKA---SPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLV------- 75 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHT---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHH-------
T ss_pred HHHhCCCHHHHHHHHHHHHHh---CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHH-------
Confidence 456789999999988888765 56 78888899999999999999998887764 5555433222222221
Q ss_pred HHHHHHHHHHh-----hCCCCCC-cHHHHhHHHH--hhCCcHHHHHHHHHHhhc
Q 007519 520 IAEHAAKRLLE-----LDPLNAP-AHVVLCNIYA--ASGRHVEEHKLRMDMGLK 565 (600)
Q Consensus 520 ~a~~~~~~~~~-----~~p~~~~-~~~~l~~~~~--~~g~~~~A~~~~~~~~~~ 565 (600)
.|+..-++.+. .-+..+. -...++.++. ..|+.++|.++.....+.
T Consensus 76 ~aE~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ 129 (273)
T 1zbp_A 76 KAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 129 (273)
T ss_dssp HHHHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc
Confidence 12222333333 1122232 3335555544 569999999988888654
No 271
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=81.64 E-value=2.8 Score=32.14 Aligned_cols=67 Identities=3% Similarity=-0.201 Sum_probs=50.0
Q ss_pred CCCHHHHHHHHHHHhhhhC---CHHHHHHHHHHHHhhCCC-CCCcHHHHhHHHHhhCCcHHHHHHHHHHhhc
Q 007519 498 EPDHRIWGALLGACGFCEG---NAEIAEHAAKRLLELDPL-NAPAHVVLCNIYAASGRHVEEHKLRMDMGLK 565 (600)
Q Consensus 498 ~p~~~~~~~l~~~~~~~~g---~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 565 (600)
.|...+--.+..++. ++. +..+++.+++.+.+..|. ....+..|+-++.+.|++++|.++.+.+.+.
T Consensus 37 ~vs~qt~F~yAw~Lv-~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~ 107 (134)
T 3o48_A 37 TATIQSRFNYAWGLI-KSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 107 (134)
T ss_dssp GSCHHHHHHHHHHHH-HSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred CCChhhHHHHHHHHH-cCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 455555444555554 444 566899999999998884 3577889999999999999999977766543
No 272
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=81.00 E-value=13 Score=26.66 Aligned_cols=61 Identities=21% Similarity=0.212 Sum_probs=46.3
Q ss_pred HHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHH
Q 007519 374 ISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTFL 437 (600)
Q Consensus 374 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~ 437 (600)
+..+...|++++|..+.+....||...|-++- -.+.|..+++..-+.++...| .|....|.
T Consensus 46 ~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALc--e~rlGl~s~le~rL~~la~sg-~p~~q~Fa 106 (115)
T 2uwj_G 46 ISSLANQGRYQEALAFAHGNPWPALEPWFALC--EWHLGLGAALDRRLAGLGGSS-DPALADFA 106 (115)
T ss_dssp HHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHH--HHHTTCHHHHHHHHHHHHTCS-SHHHHHHH
T ss_pred HHHHHcchhHHHHHHhcCCCCCchHHHHHHHH--HHhcccHHHHHHHHHHHHhCC-CHHHHHHH
Confidence 44567889999999999999999999887664 356788888888887887765 55544443
No 273
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=80.40 E-value=14 Score=26.58 Aligned_cols=60 Identities=20% Similarity=0.259 Sum_probs=44.5
Q ss_pred HHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHH
Q 007519 374 ISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKVFESMLESGTHPNSVTF 436 (600)
Q Consensus 374 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~ 436 (600)
+..+...|++++|..+.+....||...|-++-. .+.|..+++..-+.++...| .|....|
T Consensus 47 ~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~sg-~p~~q~F 106 (116)
T 2p58_C 47 LSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLARSQ-DPRIQTF 106 (116)
T ss_dssp HHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTTCC-CHHHHHH
T ss_pred HHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC-CHHHHHH
Confidence 345678899999999999999999998876644 45677778877777777665 4544444
No 274
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=78.79 E-value=38 Score=30.70 Aligned_cols=111 Identities=10% Similarity=0.055 Sum_probs=67.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHH----HHHHHHcCCCCChhHHHHHHHHhcc
Q 007519 370 ENCLISMYAKCGVIDNAYNIFSNMVSRDLVSWNSMVMGFSHHGLANETLKV----FESMLESGTHPNSVTFLGILSACSH 445 (600)
Q Consensus 370 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~----~~~m~~~~~~p~~~~~~~l~~~~~~ 445 (600)
|.++..=|.+++++++|.+++.. -...+.+.|+...|-++ ++-..+.+++++......++..+..
T Consensus 36 ~Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~ 104 (312)
T 2wpv_A 36 LRTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAE 104 (312)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 34555667777888888777543 23445566776655553 4555556778887777666665543
Q ss_pred cC--c---hHHHHHHHHHHHhhcCCCC--CcchHHHHHHHHhhcCChHHHHHHH
Q 007519 446 AG--L---VSRGWELFNAMFDVYKIQP--GPEHYVSMINLLGRAGKIKEAEEFV 492 (600)
Q Consensus 446 ~g--~---~~~a~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~ 492 (600)
-. . .+-..+.+..-.+. +-.+ ++.....++..|.+.|++.+|+..|
T Consensus 105 ~p~~~~~r~~fi~~ai~WS~~~-g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~ 157 (312)
T 2wpv_A 105 LDPSEPNLKDVITGMNNWSIKF-SEYKFGDPYLHNTIGSKLLEGDFVYEAERYF 157 (312)
T ss_dssp CCTTCTTHHHHHHHHHHHHHHT-SSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCCCCchHHHHHHHHHHHHhhc-CCCCCCCHHHHHHHHHHHhhcCCHHHHHHHH
Confidence 22 1 11122222222222 2222 6788889999999999999998866
No 275
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=73.24 E-value=27 Score=26.84 Aligned_cols=62 Identities=10% Similarity=-0.005 Sum_probs=42.8
Q ss_pred hhHHHHHHHHHHHCCCCCChhHHHHHHHHHhcccchhhhHHHHHHHhhhcCCCchhHHHHHHH
Q 007519 313 FVEATYLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLIS 375 (600)
Q Consensus 313 ~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 375 (600)
.=+..+-++.+....+.|++..+...+++|.+.+++..|..+++-+... ..+...+|..+++
T Consensus 69 ~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~lq 130 (152)
T 2y69_E 69 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHHH
Confidence 3356666777777778888888888888888888888888888755432 2223445655553
No 276
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=72.66 E-value=10 Score=36.52 Aligned_cols=94 Identities=12% Similarity=-0.070 Sum_probs=68.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhcCC------CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHc---CCCCChhH--HH
Q 007519 369 LENCLISMYAKCGVIDNAYNIFSNMV------SRDLVSWNSMVMGFSHHGLANETLKVFESMLES---GTHPNSVT--FL 437 (600)
Q Consensus 369 ~~~~l~~~~~~~~~~~~A~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~---~~~p~~~~--~~ 437 (600)
+...+.+.|.+.|++++|.+.|.++. ..-...+-.++..+...+++..+...+.+.... +-.|+... ..
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 55678899999999999999998886 233467777888899999999999999887653 22232221 11
Q ss_pred HHHHHhcccCchHHHHHHHHHHHhh
Q 007519 438 GILSACSHAGLVSRGWELFNAMFDV 462 (600)
Q Consensus 438 ~l~~~~~~~g~~~~a~~~~~~~~~~ 462 (600)
.-...+...+++..|.+.|-++...
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHhcc
Confidence 1123345678999999999988875
No 277
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=70.94 E-value=18 Score=34.84 Aligned_cols=60 Identities=7% Similarity=-0.025 Sum_probs=29.9
Q ss_pred HHHHHHHHhcccCchHHHHHHHHHHHhhcCCCC--CcchHHHHHHHHhhcCChHHHHHHHHhC
Q 007519 435 TFLGILSACSHAGLVSRGWELFNAMFDVYKIQP--GPEHYVSMINLLGRAGKIKEAEEFVLRL 495 (600)
Q Consensus 435 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 495 (600)
+...+...+.+.|+++.|.+++.++... ...+ -...+..+++.+...+++..+...++++
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~-~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka 194 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSK-AISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAV 194 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHH-HTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh-cCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 3444555555555555555555555543 1112 1334444555555555555555555444
No 278
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=65.48 E-value=59 Score=27.10 Aligned_cols=56 Identities=13% Similarity=0.128 Sum_probs=37.7
Q ss_pred cCChHHHHHHHHHHHHcCCCCCh-hHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCC
Q 007519 411 HGLANETLKVFESMLESGTHPNS-VTFLGILSACSHAGLVSRGWELFNAMFDVYKIQP 467 (600)
Q Consensus 411 ~~~~~~a~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p 467 (600)
.+...++.++|..|..+|+--.. ..|......+...|++.+|.++|+..++. +-.|
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~-~A~P 148 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAEN-NCRP 148 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCBS
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCcc
Confidence 34456777888888777765544 44555666667778888888888777765 4445
No 279
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=53.09 E-value=73 Score=24.27 Aligned_cols=66 Identities=14% Similarity=0.178 Sum_probs=40.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhCCCCCh---hhHHHHHHHHHhCCC--hhHHHHHHHHHHHCCCCCChhH
Q 007519 269 WTSMIDGYLSVGQVSNAYYLFHNMPDRDA---VAWTAMISGLVQNEL--FVEATYLFMEMRAHGVPPLNAT 334 (600)
Q Consensus 269 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~--~~~a~~~~~~m~~~g~~p~~~~ 334 (600)
...++.-|...|+.++|.+.++++..|.- .....+..++-+.++ .+.+..++..+...|+-+....
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~q~ 80 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQM 80 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHH
Confidence 34566667777777777777777765421 233444445555432 4567778888887776555443
No 280
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=51.85 E-value=16 Score=27.99 Aligned_cols=49 Identities=8% Similarity=-0.106 Sum_probs=20.8
Q ss_pred CCcccHHHHHHHHHhcCCHhHHHHHHHhcccCCchhHHHHHHHHHhcCC
Q 007519 133 KNVISWNAMIAGYVECCMMGEAIVLFEEMEERNVVTWTSMISGYCRAGE 181 (600)
Q Consensus 133 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~ 181 (600)
++...-...+.++.+.|+.+....+.+.+.+++..+....+.++.+.|+
T Consensus 54 ~~~~vR~~A~~aL~~~~~~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~ 102 (131)
T 1te4_A 54 EDWRIRGAAAWIIGNFQDERAVEPLIKLLEDDSGFVRSGAARSLEQIGG 102 (131)
T ss_dssp SCHHHHHHHHHHHGGGCSHHHHHHHHHHHHHCCTHHHHHHHHHHHHHCS
T ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc
Confidence 4444444444444444443332233333333444444444444444443
No 281
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=48.21 E-value=62 Score=25.60 Aligned_cols=66 Identities=14% Similarity=0.190 Sum_probs=38.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhCCCCC---hhhHHHHHHHHHhCCC--hhHHHHHHHHHHHCCCCCChhH
Q 007519 269 WTSMIDGYLSVGQVSNAYYLFHNMPDRD---AVAWTAMISGLVQNEL--FVEATYLFMEMRAHGVPPLNAT 334 (600)
Q Consensus 269 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~--~~~a~~~~~~m~~~g~~p~~~~ 334 (600)
...++.-|...|+.++|.+.++++..|. ..+...+..++-+.++ .+.+..++..+...|+-+....
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~q~ 82 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQM 82 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHH
Confidence 3455666666777777777777766542 1233344444544322 4557777777777765554443
No 282
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=46.56 E-value=52 Score=32.22 Aligned_cols=25 Identities=16% Similarity=0.320 Sum_probs=11.6
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHhC
Q 007519 471 HYVSMINLLGRAGKIKEAEEFVLRL 495 (600)
Q Consensus 471 ~~~~l~~~~~~~g~~~~A~~~~~~~ 495 (600)
.++.+++.|...+.++.|..++.+.
T Consensus 233 l~nllLRnYL~~~~y~qA~~lvsk~ 257 (523)
T 4b4t_S 233 LINLILRDFLNNGEVDSASDFISKL 257 (523)
T ss_dssp HHHHHHHHHHHSSCSTTHHHHHHHH
T ss_pred HHHHHHHHHHccCcHHHHHHHHhcC
Confidence 3444444444444444444444443
No 283
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=45.95 E-value=1.1e+02 Score=24.16 Aligned_cols=52 Identities=12% Similarity=0.197 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHcCCCCCh-hHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCC
Q 007519 415 NETLKVFESMLESGTHPNS-VTFLGILSACSHAGLVSRGWELFNAMFDVYKIQP 467 (600)
Q Consensus 415 ~~a~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p 467 (600)
+++.++|..|..+|+-... ..|......+...|++.+|.++|+..++. +-.|
T Consensus 82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~-~A~P 134 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQN-QAEP 134 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCBS
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCcc
Confidence 3467777777777655443 34555556666677777777777776664 4444
No 284
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=43.59 E-value=2.1e+02 Score=26.87 Aligned_cols=216 Identities=11% Similarity=0.025 Sum_probs=105.3
Q ss_pred HHHHHHhcccchhhhHHHHHHHhhhcCCCc-----hhHHHHHHHHHHhcCChHHHHHHHhcCC------CCChhhHHH--
Q 007519 337 VLFGAAGATANIDLGRQIHCVLMKTESESD-----LILENCLISMYAKCGVIDNAYNIFSNMV------SRDLVSWNS-- 403 (600)
Q Consensus 337 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~------~~~~~~~~~-- 403 (600)
.+...|...|++..|..++..+.+.=.+.| ..++..-++.|...+++.++...+.... .+++..-..
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 466777888888888877776655322212 3344555667778888888777775543 123322221
Q ss_pred --HHHHHH-hcCChHHHHHHHHHHHHcCCCCChh------HHHHHHHHhcccCchHHHHHHHH-HHHhhcCCCCCcchHH
Q 007519 404 --MVMGFS-HHGLANETLKVFESMLESGTHPNSV------TFLGILSACSHAGLVSRGWELFN-AMFDVYKIQPGPEHYV 473 (600)
Q Consensus 404 --l~~~~~-~~~~~~~a~~~~~~m~~~~~~p~~~------~~~~l~~~~~~~g~~~~a~~~~~-~~~~~~~~~p~~~~~~ 473 (600)
-...+. ..+++.+|...|-+..+.=-..... .|..+. +. -.++..+-..++. .....+ ..|....+.
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~-aL-l~~~r~el~~~l~~~~~~~~-~~pei~~l~ 260 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLC-KI-MLGQSDDVNQLVSGKLAITY-SGRDIDAMK 260 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH-HH-HTTCGGGHHHHHHSHHHHTT-CSHHHHHHH
T ss_pred HHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHH-HH-HcCCHHHHHHHhcccccccc-CCccHHHHH
Confidence 123355 6788888887776654320011111 121111 11 1222222222222 222211 234444455
Q ss_pred HHHHHHhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCCCcHHHHhHHHHhhCC
Q 007519 474 SMINLLGRAGKIKEAEEFVLRLP--FEPDHRIWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGR 551 (600)
Q Consensus 474 ~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 551 (600)
.++.+| ..+++.+..++++... +..|...... +..+. ..= -...+.++ ..|-.......++..+.- .
T Consensus 261 ~L~~a~-~~~dl~~f~~iL~~~~~~l~~D~~l~~h-~~~L~--~~I---r~~~L~~i--~~pYsrIsl~~iA~~l~l--s 329 (394)
T 3txn_A 261 SVAEAS-HKRSLADFQAALKEYKKELAEDVIVQAH-LGTLY--DTM---LEQNLCRI--IEPYSRVQVAHVAESIQL--P 329 (394)
T ss_dssp HHHHHH-HTTCHHHHHHHHHHSTTTTTTSHHHHHH-HHHHH--HHH---HHHHHHHH--HTTCSEEEHHHHHHHHTC--C
T ss_pred HHHHHH-HhCCHHHHHHHHHHHHHHHhcChHHHHH-HHHHH--HHH---HHHHHHHH--hHhhceeeHHHHHHHHCc--C
Confidence 555554 5567777777776653 3334432111 11110 000 01111222 456555667777766543 5
Q ss_pred cHHHHHHHHHHhhcC
Q 007519 552 HVEEHKLRMDMGLKG 566 (600)
Q Consensus 552 ~~~A~~~~~~~~~~~ 566 (600)
.+++......|...|
T Consensus 330 ~~evE~~L~~lI~dg 344 (394)
T 3txn_A 330 MPQVEKKLSQMILDK 344 (394)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHCC
Confidence 677777555555444
No 285
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=43.06 E-value=1.6e+02 Score=25.42 Aligned_cols=213 Identities=10% Similarity=-0.070 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCCHhHHHHHHHhcccCC---chhHHHHHHHHHhcCChhHHHHHHccCCCCCcchHH--HHHHHHHhcCCh
Q 007519 139 NAMIAGYVECCMMGEAIVLFEEMEERN---VVTWTSMISGYCRAGEVEEGYCLFRRMPRKNVVSWT--AMIGGFAWNGFH 213 (600)
Q Consensus 139 ~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~li~~~~~~~~~ 213 (600)
...+...++.|+.+....+++.-..++ ...-.+.+...+..|+.+-...+++.-..++..... +.+...+..|+.
T Consensus 6 ~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~ 85 (285)
T 1wdy_A 6 NHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSV 85 (285)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCH
T ss_pred chHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCH
Q ss_pred hHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHhcCChhhHHHHhcccCCCC------------chhHHHHHHHHHhcCC
Q 007519 214 KESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFGRLEEAQNLFDTVPVRD------------EISWTSMIDGYLSVGQ 281 (600)
Q Consensus 214 ~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------------~~~~~~l~~~~~~~~~ 281 (600)
+-+..+++.-. .+......-...+...+..|+.+-...+++.-...+ ...-.+.+...+..|+
T Consensus 86 ~~v~~Ll~~g~-----~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~ 160 (285)
T 1wdy_A 86 KLLKLFLSKGA-----DVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGH 160 (285)
T ss_dssp HHHHHHHHTTC-----CTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTC
T ss_pred HHHHHHHHcCC-----CCCccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHHcCC
Q ss_pred hHHHHHHHhhCCC---CChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCh--hHHHHHHHHHhcccchhhhHHHHH
Q 007519 282 VSNAYYLFHNMPD---RDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLN--ATFSVLFGAAGATANIDLGRQIHC 356 (600)
Q Consensus 282 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~--~~~~~l~~~~~~~~~~~~a~~~~~ 356 (600)
.+-+..+++.... .....-...+...+..+......++++.+.+.|..++. ..-.+.+...+..|+.+.+..+++
T Consensus 161 ~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 240 (285)
T 1wdy_A 161 VEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLE 240 (285)
T ss_dssp HHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCccCCCCCCHHHHHHHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHh
No 286
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=41.54 E-value=96 Score=23.60 Aligned_cols=64 Identities=19% Similarity=0.280 Sum_probs=41.2
Q ss_pred HHHHHHHHhcCChHHHHHHHhcCCCCCh---hhHHHHHHHHHhcCC--hHHHHHHHHHHHHcCCCCChh
Q 007519 371 NCLISMYAKCGVIDNAYNIFSNMVSRDL---VSWNSMVMGFSHHGL--ANETLKVFESMLESGTHPNSV 434 (600)
Q Consensus 371 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~~~--~~~a~~~~~~m~~~~~~p~~~ 434 (600)
..++.-|...|+.++|.+.++++..|.. .+...+..++-+.++ .+.+..++..+...|+-+...
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~q 79 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQ 79 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHH
Confidence 4677778888999999999988875532 233344445554432 356777787777766554443
No 287
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=40.10 E-value=1.4e+02 Score=23.85 Aligned_cols=51 Identities=12% Similarity=0.199 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHcCCCCCh-hHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCC
Q 007519 416 ETLKVFESMLESGTHPNS-VTFLGILSACSHAGLVSRGWELFNAMFDVYKIQP 467 (600)
Q Consensus 416 ~a~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p 467 (600)
+..++|..|..+|+-... ..|......+...|++.+|.++|+..++. +-.|
T Consensus 78 ~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~-~A~P 129 (164)
T 2wvi_A 78 EPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQ-KAEP 129 (164)
T ss_dssp CHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCBS
T ss_pred CHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCc
Confidence 366677777777665544 34455556666677777777777777664 4444
No 288
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=39.15 E-value=41 Score=25.53 Aligned_cols=68 Identities=6% Similarity=-0.083 Sum_probs=30.8
Q ss_pred CCChhhHHHHHHHHHhcCChHHHHHHhhcCCCCCceeHHHHHHHHHHCCChhHHHHHhhcCCCCCccc
Q 007519 70 ERNVVSWTAMICGLADAGRVCEARKLFEEMPERNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVIS 137 (600)
Q Consensus 70 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 137 (600)
.+|..+-...+.++.+.|+.+....+.+.+..+|.......+.++.+.|+.+....+.+.+.+++...
T Consensus 53 d~~~~vR~~A~~aL~~~~~~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~~~a~~~L~~~l~d~~~~v 120 (131)
T 1te4_A 53 NEDWRIRGAAAWIIGNFQDERAVEPLIKLLEDDSGFVRSGAARSLEQIGGERVRAAMEKLAETGTGFA 120 (131)
T ss_dssp CSCHHHHHHHHHHHGGGCSHHHHHHHHHHHHHCCTHHHHHHHHHHHHHCSHHHHHHHHHHTTSCCTHH
T ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHhCCCHHH
Confidence 34444444555555555543322222222223555555555666666665433333333333344433
No 289
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=36.88 E-value=2.6e+02 Score=25.88 Aligned_cols=192 Identities=10% Similarity=0.024 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCChhHHHHHHccCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHHhcC
Q 007519 170 TSMISGYCRAGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESLLLFIEMKGICDNGNNCNVQSCNSMINGYIRFG 249 (600)
Q Consensus 170 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 249 (600)
..++.-|...++.++|...++.+..|.....-.-.-.-....+-+.-.+....+...+-.++-+.......+...+....
T Consensus 58 ~~ii~EYf~~~d~~Ea~~~l~eL~~p~~~~~~v~~~I~~aLdr~~~erE~~s~LLs~L~~~~ls~~~i~~gf~~lle~ld 137 (358)
T 3eiq_C 58 TPIIQEYFEHGDTNEVAEMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLCGTVMSTNDVEKSFDKLLKDLP 137 (358)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTTCCGGGGGHHHHHHHHHTTSCHHHHHHHHHHHHTTTTTSCCHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHhCCchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhh
Q ss_pred Chh----hHHHHhcccC-----------------------------------------------------------CCCc
Q 007519 250 RLE----EAQNLFDTVP-----------------------------------------------------------VRDE 266 (600)
Q Consensus 250 ~~~----~a~~~~~~~~-----------------------------------------------------------~~~~ 266 (600)
++. .|..++-.+. ..=.
T Consensus 138 Dl~lDiP~a~~~la~flaRaV~d~~l~~~~l~~~~~~~~~~~~~~~l~~a~~~L~~~~~~~~~~~~WG~g~~~~~veelk 217 (358)
T 3eiq_C 138 ELALDTPRAPQLVGQFIARAVGDGILCNTYIDSYKGTVDCVQARAALDKATVLLSMSKGGKRKDSVWGSGGGQQPVNHLV 217 (358)
T ss_dssp HHHHHCTTHHHHHHHHHHHHHHTTCSCSSTTGGGC---CCHHHHHHHHHHHHHHTC---------CCCCCCSSSCHHHHH
T ss_pred hhccccccHHHHHHHHHHHHHHhCCCCHHHHHHHhhcccchHHHHHHHHHHHHHhccchHHHHHHhcCCCCCCccHHHHH
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHhhCCCC---ChhhHHHHHHHHHhCC--ChhHHHHHHHHHHHCCCCCChhHHHHHHHH
Q 007519 267 ISWTSMIDGYLSVGQVSNAYYLFHNMPDR---DAVAWTAMISGLVQNE--LFVEATYLFMEMRAHGVPPLNATFSVLFGA 341 (600)
Q Consensus 267 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g--~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~ 341 (600)
.....++.-|...|+.++|.+.++++..| .......+..++-+.+ ..+.+..++..+...|+-+.......+...
T Consensus 218 kki~~lL~EY~~s~D~~EA~~ci~EL~~p~fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~~~Gf~~v 297 (358)
T 3eiq_C 218 KEIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYERI 297 (358)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHCCTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCHHHHHHHHHHccCCcchHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_pred Hhccc----chhhhHHHHHHHhhh
Q 007519 342 AGATA----NIDLGRQIHCVLMKT 361 (600)
Q Consensus 342 ~~~~~----~~~~a~~~~~~~~~~ 361 (600)
+.... ++..|..++..+...
T Consensus 298 l~~ldDl~lDiP~A~~~la~~var 321 (358)
T 3eiq_C 298 YNEIPDINLDVPHSYSVLERFVEE 321 (358)
T ss_dssp HHHHHHHHHHCTTHHHHHHHHHHH
T ss_pred HHhccHhhcccccHHHHHHHHHHH
No 290
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=35.97 E-value=2.8e+02 Score=26.11 Aligned_cols=175 Identities=14% Similarity=0.078 Sum_probs=86.0
Q ss_pred HHHHHHHhcCChhhHHHHhccCCCCCcc--hHHHHHHHHHcCCChhHHHHHhhhcCCC---ChhhHHHHHHHHHhcCChH
Q 007519 16 SSITKYSKRGFIDEAKALFQLMPQRNVV--SYNAMLSGFLQNGRLSEARRLFEEMPER---NVVSWTAMICGLADAGRVC 90 (600)
Q Consensus 16 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~ 90 (600)
+.+...+..|+.+-...+++.-..++.. ...+.+...+..|+.+-+.-+++.-... +..-.+ .+...++.|+.+
T Consensus 16 t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t-~L~~A~~~g~~~ 94 (437)
T 1n11_A 16 TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQT-PLHCAARIGHTN 94 (437)
T ss_dssp CHHHHHHHHTCHHHHHHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSCC-HHHHHHHHTCHH
T ss_pred CHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCC-HHHHHHHCCCHH
Confidence 3455666778888877777765443321 1122344445667777777776654332 212222 233445667766
Q ss_pred HHHHHhhcCCCCC---ceeHHHHHHHHHHCCChhHHHHHhhcCCCC---CcccHHHHHHHHHhcCCHhHHHHHHHhcccC
Q 007519 91 EARKLFEEMPERN---VVSWNSMVVGLIRNGELNEARKVFNSMPIK---NVISWNAMIAGYVECCMMGEAIVLFEEMEER 164 (600)
Q Consensus 91 ~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 164 (600)
-+.-+++.-..++ ...++. +...+..|+.+.+..+++.-... +.... ..+...+..|+.+-+..+++.-..+
T Consensus 95 ~v~~Ll~~ga~~~~~~~~g~t~-L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~-t~L~~A~~~g~~~~v~~Ll~~g~~~ 172 (437)
T 1n11_A 95 MVKLLLENNANPNLATTAGHTP-LHIAAREGHVETVLALLEKEASQACMTKKGF-TPLHVAAKYGKVRVAELLLERDAHP 172 (437)
T ss_dssp HHHHHHHHTCCTTCCCTTCCCH-HHHHHHHTCHHHHHHHHHTTCCSCCCCTTSC-CHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred HHHHHHhCCCCCCCCCCCCCcH-HHHHHHcCCHHHHHHHHhCCCCCcCCCCCCC-CHHHHHHHcCCHHHHHHHHhCCCCC
Confidence 6666665433322 222222 23345567777776666654431 11111 1233344556666666665543332
Q ss_pred Cch--hHHHHHHHHHhcCChhHHHHHHccCC
Q 007519 165 NVV--TWTSMISGYCRAGEVEEGYCLFRRMP 193 (600)
Q Consensus 165 ~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~ 193 (600)
+.. .-.+.+...+..|+.+-..-+++.-.
T Consensus 173 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~ 203 (437)
T 1n11_A 173 NAAGKNGLTPLHVAVHHNNLDIVKLLLPRGG 203 (437)
T ss_dssp TCCCSSCCCHHHHHHHTTCHHHHHHHGGGTC
T ss_pred CCCCCCCCCHHHHHHHcCCHHHHHHHHhCCC
Confidence 221 11122344455566665555555443
No 291
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=35.92 E-value=3.7e+02 Score=27.41 Aligned_cols=22 Identities=14% Similarity=-0.094 Sum_probs=17.6
Q ss_pred hhcCChHHHHHHHHhCCCCCCH
Q 007519 480 GRAGKIKEAEEFVLRLPFEPDH 501 (600)
Q Consensus 480 ~~~g~~~~A~~~~~~~~~~p~~ 501 (600)
...|+++.|++.++++++-|..
T Consensus 549 ~~~g~~~~AL~~i~~L~llPl~ 570 (661)
T 2qx5_A 549 YFNKQWQETLSQMELLDLLPFS 570 (661)
T ss_dssp HHTTCHHHHHHHHHHTSCSCC-
T ss_pred HHcCCHHHHHHHHHhCCCCCCC
Confidence 6899999999999998755533
No 292
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=35.73 E-value=1.9e+02 Score=24.47 Aligned_cols=52 Identities=15% Similarity=0.257 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHcCCCCCh-hHHHHHHHHhcccCchHHHHHHHHHHHhhcCCCC
Q 007519 415 NETLKVFESMLESGTHPNS-VTFLGILSACSHAGLVSRGWELFNAMFDVYKIQP 467 (600)
Q Consensus 415 ~~a~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p 467 (600)
++...+|..|...|+--.. ..|......+...|++.+|.++|+..++. +-.|
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~-~A~P 183 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRM-KAKP 183 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TCBS
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCcc
Confidence 4555666666666655443 33445555556666666666666666654 3344
No 293
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=34.97 E-value=93 Score=26.77 Aligned_cols=26 Identities=15% Similarity=0.042 Sum_probs=16.7
Q ss_pred CCcchHHHHHHHHhhcCChHHHHHHH
Q 007519 467 PGPEHYVSMINLLGRAGKIKEAEEFV 492 (600)
Q Consensus 467 p~~~~~~~l~~~~~~~g~~~~A~~~~ 492 (600)
+++......+..+.+.|+-++|.++|
T Consensus 89 ~~~~~~r~~v~~L~rLg~~~~A~~lf 114 (235)
T 2d2s_A 89 NEIVHLKSGTENMIKLGLPEQALDLF 114 (235)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCChhHHHHHH
Confidence 34444555566677777777777766
No 294
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=33.50 E-value=84 Score=24.80 Aligned_cols=64 Identities=19% Similarity=0.280 Sum_probs=41.0
Q ss_pred HHHHHHHHhcCChHHHHHHHhcCCCCCh---hhHHHHHHHHHhcCC--hHHHHHHHHHHHHcCCCCChh
Q 007519 371 NCLISMYAKCGVIDNAYNIFSNMVSRDL---VSWNSMVMGFSHHGL--ANETLKVFESMLESGTHPNSV 434 (600)
Q Consensus 371 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~~~--~~~a~~~~~~m~~~~~~p~~~ 434 (600)
..++.-|...|+.++|.+.++++..|.. .+...+..++-+.++ .+.+..++..+...|+-+...
T Consensus 13 ~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~q 81 (152)
T 2ion_A 13 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQ 81 (152)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHH
Confidence 4677778888999999999998875532 233344445554332 345777777777666544443
No 295
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=32.71 E-value=1.1e+02 Score=29.88 Aligned_cols=42 Identities=19% Similarity=0.177 Sum_probs=25.8
Q ss_pred CCHHHHHHHHHHHHhhCCCCCCcHHHHhHHHHhhCCcHHHHH
Q 007519 516 GNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHK 557 (600)
Q Consensus 516 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 557 (600)
..+..|...|.++..+.|++...|+.|+-.....|+.-+|.-
T Consensus 166 ~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y 207 (497)
T 1ya0_A 166 NQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIF 207 (497)
T ss_dssp TCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHH
Confidence 445566666666666666666666666666666665555444
No 296
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=32.51 E-value=54 Score=23.48 Aligned_cols=38 Identities=8% Similarity=0.040 Sum_probs=26.2
Q ss_pred CChhHHHHHHccCCCCCcchHHHHHHHHHhcCChhHHH
Q 007519 180 GEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGFHKESL 217 (600)
Q Consensus 180 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 217 (600)
...++|.++++.+++++..+|..++.++...|+..-|.
T Consensus 51 t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La~ 88 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLAS 88 (97)
T ss_dssp CHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHHH
T ss_pred ChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHHH
Confidence 35677777777777777777777777776656555443
No 297
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=31.89 E-value=38 Score=21.58 Aligned_cols=46 Identities=17% Similarity=0.180 Sum_probs=23.2
Q ss_pred HHHHHHhhCCCCCCcHHHHhHHHHhhCCcHHHHHHHHHHhhcCCccC
Q 007519 524 AAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKGVRKV 570 (600)
Q Consensus 524 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 570 (600)
..+.+.++.| +......-.-.-...|+.+.|+..+-.|...+..++
T Consensus 12 ~l~~L~emFP-~ld~~~I~~vL~a~~gdvd~aI~~LL~m~~~~~~~~ 57 (59)
T 1wgl_A 12 DLKAIQDMFP-NMDQEVIRSVLEAQRGNKDAAINSLLQMGEEPSGPS 57 (59)
T ss_dssp HHHHHHHHCS-SSCHHHHHHHHTTTTTCHHHHHHHHHHSSCCCCSCC
T ss_pred HHHHHHHHCC-CCCHHHHHHHHHHcCCCHHHHHHHHHcCcCCCCCCC
Confidence 3444455566 333322222222345777777776666655555443
No 298
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=30.57 E-value=3.5e+02 Score=26.51 Aligned_cols=60 Identities=12% Similarity=-0.003 Sum_probs=40.2
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHccCCCCCc-chH-------HHHHHHHHhcCChhHHHHHHHHHHhh
Q 007519 167 VTWTSMISGYCRAGEVEEGYCLFRRMPRKNV-VSW-------TAMIGGFAWNGFHKESLLLFIEMKGI 226 (600)
Q Consensus 167 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~-------~~li~~~~~~~~~~~a~~~~~~~~~~ 226 (600)
..++.++..|...+.++.|..+..+..-|.. .+- .-+.+.+.-.+++.+|.+.|......
T Consensus 232 ~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 232 MLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 4567777788888888888888887765422 111 12345556677888888888777653
No 299
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=30.56 E-value=4.2e+02 Score=28.58 Aligned_cols=52 Identities=15% Similarity=0.160 Sum_probs=30.2
Q ss_pred HHHHHHhcCChhhHHHHhcccCCCCchhHHHHHHHHHhcCChHHHHHHHhhCC
Q 007519 241 MINGYIRFGRLEEAQNLFDTVPVRDEISWTSMIDGYLSVGQVSNAYYLFHNMP 293 (600)
Q Consensus 241 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 293 (600)
++..+...+.++-+.++...+. .++..--.+..+|...|++++|...|++..
T Consensus 816 l~~~L~~~~~~~~a~eL~~~~~-~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA 867 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGWLN-SDPIAVYLKALIYLKSKEAVKAVRCFKTTS 867 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGGCC-SSHHHHHHHHHHHHHTTCHHHHHHHHHTCC
T ss_pred HHHHHHHhcHHHHHHHHHhhcC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 4455555666666555444433 344444455666777777777777776654
No 300
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=30.12 E-value=1.1e+02 Score=26.30 Aligned_cols=24 Identities=4% Similarity=-0.117 Sum_probs=17.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhh
Q 007519 203 MIGGFAWNGFHKESLLLFIEMKGI 226 (600)
Q Consensus 203 li~~~~~~~~~~~a~~~~~~~~~~ 226 (600)
-++.+....++++|.+++++..+.
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~~ 47 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIESQ 47 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHH
Confidence 456677777788887777777654
No 301
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=27.18 E-value=3.5e+02 Score=24.66 Aligned_cols=25 Identities=16% Similarity=0.421 Sum_probs=12.9
Q ss_pred HHHHHHHHhcCChhhHHHHhcccCC
Q 007519 239 NSMINGYIRFGRLEEAQNLFDTVPV 263 (600)
Q Consensus 239 ~~l~~~~~~~~~~~~a~~~~~~~~~ 263 (600)
..++.-|...|+.++|...++++..
T Consensus 15 ~~ll~Ey~~~~d~~Ea~~ci~el~~ 39 (339)
T 1ug3_A 15 KAIIEEYLHLNDMKEAVQCVQELAS 39 (339)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTCC
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCC
Confidence 3444555555555555555555543
No 302
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=26.94 E-value=2.7e+02 Score=23.04 Aligned_cols=66 Identities=18% Similarity=0.105 Sum_probs=35.8
Q ss_pred hHHHHHHHHhCCCCCCHH--HH-----HHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCCCcHHHHhHHHHhhCC
Q 007519 485 IKEAEEFVLRLPFEPDHR--IW-----GALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGR 551 (600)
Q Consensus 485 ~~~A~~~~~~~~~~p~~~--~~-----~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 551 (600)
++.|+.+|+.+...-+.. .. ...+..|. +.|.+++|.+++++..+-.|.+...-..|..+-.+...
T Consensus 94 LESAl~v~~~I~~e~~~lheei~~Llk~qAV~VCi-ekg~Fk~A~eiLkr~f~~~~~~~~lr~kL~~II~~Kd~ 166 (211)
T 3bqo_A 94 LESALMIWGSIEKEHDKLHEEIQNLIKIQAIAVCM-ENGNFKEAEEVFERIFGDPNSHMPFKSKLLMIISQKDT 166 (211)
T ss_dssp HHHHHHHHTTSCSCCCHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHC-----CCTTHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH-HccchHHHHHHHHHHhcCCCCchHHHHHHHHHHHccCC
Confidence 366777777775222211 11 22345577 88999999999998888776555554455444443333
No 303
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=26.80 E-value=2.8e+02 Score=23.11 Aligned_cols=50 Identities=10% Similarity=0.013 Sum_probs=20.7
Q ss_pred hhHHHHHHHHHHHCCCCCChh-HHHHHHHHHhcccchhhhHHHHHHHhhhc
Q 007519 313 FVEATYLFMEMRAHGVPPLNA-TFSVLFGAAGATANIDLGRQIHCVLMKTE 362 (600)
Q Consensus 313 ~~~a~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 362 (600)
..+...+|..|...||-.... -|......+...|++.+|..++..-.+.+
T Consensus 95 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~ 145 (202)
T 3esl_A 95 FHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENN 145 (202)
T ss_dssp HHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 445555555555554433222 22233333334444444444444333333
No 304
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=26.47 E-value=4.2e+02 Score=28.55 Aligned_cols=25 Identities=4% Similarity=-0.189 Sum_probs=15.3
Q ss_pred hhHHHHHHHHHhcCChhhHHHHhcc
Q 007519 236 QSCNSMINGYIRFGRLEEAQNLFDT 260 (600)
Q Consensus 236 ~~~~~l~~~~~~~~~~~~a~~~~~~ 260 (600)
.-|..+++.+-+.+-++.+.++-+.
T Consensus 898 ~YY~hV~~LFE~~~a~~~vi~fA~l 922 (950)
T 4gq2_M 898 CYYLHLSKKLFEESAYIDALEFSLL 922 (950)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 3566666777777766666555443
No 305
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=25.47 E-value=2.1e+02 Score=22.17 Aligned_cols=60 Identities=8% Similarity=0.081 Sum_probs=29.0
Q ss_pred HHHCCCCCChhHHHHHHHHHhcccchhhhHHHHHHHhhhcCCCchhHHHHHHHHHHhcCCh
Q 007519 323 MRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVI 383 (600)
Q Consensus 323 m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 383 (600)
+.+.|++++..-.. ++..+...+..-.|.++++.+.+.+...+..+....++.+...|-+
T Consensus 13 l~~~g~r~T~qR~~-Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 72 (145)
T 2fe3_A 13 LKETGVRITPQRHA-ILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLV 72 (145)
T ss_dssp HHHTTCCCCHHHHH-HHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHcCCCCCHHHHH-HHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCE
Confidence 44455555444332 2222223344455566666655555555555545555555555543
No 306
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=24.39 E-value=2.8e+02 Score=22.31 Aligned_cols=179 Identities=9% Similarity=0.020 Sum_probs=0.0
Q ss_pred HHHHHhcCChHHHHHHHhhCCC----CChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHH--HHHHHHHhccc
Q 007519 273 IDGYLSVGQVSNAYYLFHNMPD----RDAVAWTAMISGLVQNELFVEATYLFMEMRAHGVPPLNATF--SVLFGAAGATA 346 (600)
Q Consensus 273 ~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~--~~l~~~~~~~~ 346 (600)
+...+..|+.+....++..-.. .+..-++.+..+..... .++++.+.+.|..++.... .+.+...+..|
T Consensus 9 L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~-----~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~ 83 (201)
T 3hra_A 9 LLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNND-----IEIAKALIDRGADINLQNSISDSPYLYAGAQG 83 (201)
T ss_dssp HHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHHTC-----HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred HHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCC-----HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcC
Q ss_pred chhhhHHHHHHHhhhcCCCchhHHHHHHHHHHhcCChHHHHHHHhcCC----CCChhhHHHHHHHHHhcCChHHHHHHHH
Q 007519 347 NIDLGRQIHCVLMKTESESDLILENCLISMYAKCGVIDNAYNIFSNMV----SRDLVSWNSMVMGFSHHGLANETLKVFE 422 (600)
Q Consensus 347 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 422 (600)
+.+.+..+++. ....+......-...+...+..|+.+-+..+++.-. ..+..-++.+..+.........-.++.+
T Consensus 84 ~~~~~~~Ll~~-~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~ 162 (201)
T 3hra_A 84 RTEILAYMLKH-ATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVK 162 (201)
T ss_dssp CHHHHHHHHHH-SCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHH
T ss_pred CHHHHHHHHhc-cCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHH
Q ss_pred HHHHcCCCCChhHHH--HHHHHhcccCchHHHHHHHH
Q 007519 423 SMLESGTHPNSVTFL--GILSACSHAGLVSRGWELFN 457 (600)
Q Consensus 423 ~m~~~~~~p~~~~~~--~l~~~~~~~g~~~~a~~~~~ 457 (600)
.+.+.|..++..... +.+......|+.+-+.-+++
T Consensus 163 ~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~ 199 (201)
T 3hra_A 163 LLMENGADQSIKDNSGRTAMDYANQKGYTEISKILAQ 199 (201)
T ss_dssp HHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHT
T ss_pred HHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHh
No 307
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=24.20 E-value=1.1e+02 Score=21.48 Aligned_cols=34 Identities=12% Similarity=0.295 Sum_probs=20.2
Q ss_pred cCChhHHHHHHccCCCCCcchHHHHHHHHHhcCC
Q 007519 179 AGEVEEGYCLFRRMPRKNVVSWTAMIGGFAWNGF 212 (600)
Q Consensus 179 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~ 212 (600)
....++|.++++.+.+++..+|..++.++...+.
T Consensus 49 ~t~~~kar~Lld~l~~kG~~af~~F~~aL~~~~~ 82 (94)
T 2p1h_A 49 PTQQQRAAMLIKMILKKDNDSYVSFYNALLHEGY 82 (94)
T ss_dssp SSHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTC
T ss_pred CChHHHHHHHHHHHHHcCHHHHHHHHHHHHHcCH
Confidence 3455566666666666666666666666655554
No 308
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=22.70 E-value=3.8e+02 Score=23.34 Aligned_cols=184 Identities=10% Similarity=0.002 Sum_probs=0.0
Q ss_pred hHHHHHHHhcCChhhHHHHhccCCCCCcchHHHHHHHHHcCCChhHHHHHhhhcCCCChhhHH--HHHHHHHhcCChHHH
Q 007519 15 TSSITKYSKRGFIDEAKALFQLMPQRNVVSYNAMLSGFLQNGRLSEARRLFEEMPERNVVSWT--AMICGLADAGRVCEA 92 (600)
Q Consensus 15 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~l~~~~~~~g~~~~A 92 (600)
.+.+...+..|+.+-+..+++.-..++...-.+.+...+..|+.+-+.-+++.-..++..... +-+...+..|+.+-+
T Consensus 32 ~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~~v 111 (285)
T 3kea_A 32 HSASYYAIADNNVRLVCTLLNAGALKNLLENEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNMQTV 111 (285)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHTTGGGSCCTTCCHHHHHTTSSSCHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHH
T ss_pred CCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHcCCHHHH
Q ss_pred HHHhhcCCC---CCceeHHHHHHHHHHCCChhHHHHHhhcCCCCCcc-cHHHHHHHHHhcCCHhHHHHHHHhcccCCchh
Q 007519 93 RKLFEEMPE---RNVVSWNSMVVGLIRNGELNEARKVFNSMPIKNVI-SWNAMIAGYVECCMMGEAIVLFEEMEERNVVT 168 (600)
Q Consensus 93 ~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 168 (600)
.-+++.-.. .|...+...+...+..|+.+-+.-+++.-...... .-...+...+..|+.+-+.-+++.-..++...
T Consensus 112 ~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~ 191 (285)
T 3kea_A 112 KLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDLAILLSCIHITIKNGHVDMMILLLDYMTSTNTNN 191 (285)
T ss_dssp HHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCCCSTHHHHHHHHHHTTCHHHHHHHHHHHHHTCTTC
T ss_pred HHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCccccccCCccHHHHHHHcChHHHHHHHHHcCCCCCccc
Q ss_pred HHH---HHHHHHhcCChhHHHHHHccCCCCCcc
Q 007519 169 WTS---MISGYCRAGEVEEGYCLFRRMPRKNVV 198 (600)
Q Consensus 169 ~~~---l~~~~~~~g~~~~A~~~~~~~~~~~~~ 198 (600)
..- .+...++.|+.+-+.-+++.-..++..
T Consensus 192 ~~g~t~~L~~A~~~~~~~~v~~Ll~~gad~~~~ 224 (285)
T 3kea_A 192 SLLFIPDIKLAIDNKDIEMLQALFKYDINIYSA 224 (285)
T ss_dssp CCBCCTTHHHHHHHTCHHHHHHHTTSCBCSTTT
T ss_pred CCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCC
No 309
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=22.67 E-value=1e+02 Score=22.03 Aligned_cols=38 Identities=26% Similarity=0.348 Sum_probs=26.9
Q ss_pred CChhHHHHHhhhcCCCChhhHHHHHHHHHhcCChHHHH
Q 007519 56 GRLSEARRLFEEMPERNVVSWTAMICGLADAGRVCEAR 93 (600)
Q Consensus 56 ~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 93 (600)
...+.|.+++..+++..+.+|..++.++...|...-|.
T Consensus 51 t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La~ 88 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLAS 88 (97)
T ss_dssp CHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHHH
T ss_pred ChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHHH
Confidence 46777777888777777777778777776656655443
No 310
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=22.19 E-value=2.7e+02 Score=25.09 Aligned_cols=66 Identities=15% Similarity=0.170 Sum_probs=40.0
Q ss_pred HHHHHHHHhcCChHHHHHHHhhCCCCCh---hhHHHHHHHHHhCCC--hhHHHHHHHHHHHCCCCCChhHH
Q 007519 270 TSMIDGYLSVGQVSNAYYLFHNMPDRDA---VAWTAMISGLVQNEL--FVEATYLFMEMRAHGVPPLNATF 335 (600)
Q Consensus 270 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~--~~~a~~~~~~m~~~g~~p~~~~~ 335 (600)
..++.-|...|+.++|.+.++++..|.- .....+..++-+.++ .+.+..++..+.+.|+-+.....
T Consensus 170 ~~lL~EY~~~~D~~EA~~ci~EL~~p~f~~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~q~~ 240 (307)
T 2zu6_B 170 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQMK 240 (307)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHCCGGGHHHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHcCCCcchHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 4566667777777777777777766521 233444444444333 45567788888877765554443
No 311
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=21.60 E-value=2.9e+02 Score=21.50 Aligned_cols=59 Identities=5% Similarity=0.063 Sum_probs=25.7
Q ss_pred HHHCCCCCChhHHHHHHHHHhcccchhhhHHHHHHHhhhcCCCchhHHHHHHHHHHhcCC
Q 007519 323 MRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDLILENCLISMYAKCGV 382 (600)
Q Consensus 323 m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 382 (600)
+.+.|++++..-.. ++..+...+..-.|.++++.+.+.+...+..+....++.+...|-
T Consensus 18 l~~~g~r~T~qR~~-IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 76 (150)
T 2xig_A 18 IKKNGLKNSKQREE-VVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENF 76 (150)
T ss_dssp HHHCC--CHHHHHH-HHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHcCCCCCHHHHH-HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCc
Confidence 34445444433322 222233333444555555555555444444444445555555444
No 312
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=21.46 E-value=2e+02 Score=22.28 Aligned_cols=14 Identities=0% Similarity=0.124 Sum_probs=5.7
Q ss_pred hHHHHHHHHHHHHc
Q 007519 414 ANETLKVFESMLES 427 (600)
Q Consensus 414 ~~~a~~~~~~m~~~ 427 (600)
.-.|.++++.+.+.
T Consensus 37 ~~sa~ei~~~l~~~ 50 (145)
T 2fe3_A 37 HPTADDIYKALEGK 50 (145)
T ss_dssp CCCHHHHHHHHGGG
T ss_pred CCCHHHHHHHHHHh
Confidence 33344444444433
No 313
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A
Probab=21.40 E-value=3e+02 Score=25.22 Aligned_cols=79 Identities=8% Similarity=-0.004 Sum_probs=52.3
Q ss_pred HHHHHHHHCCCCCChhHHHHHHHHHhcccchhhhHHHHHHHhhhcCCCch-hHH--HHHHHH----HHhcCChHHHHHHH
Q 007519 318 YLFMEMRAHGVPPLNATFSVLFGAAGATANIDLGRQIHCVLMKTESESDL-ILE--NCLISM----YAKCGVIDNAYNIF 390 (600)
Q Consensus 318 ~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~--~~l~~~----~~~~~~~~~A~~~~ 390 (600)
++++.+.+.|+.|...++..++..+.+.=.++.+..+|+.+...|..... ..+ .+++.. .....++++...++
T Consensus 230 ~L~~hL~~~~i~~~~f~~~W~~~lF~~~~p~~~~lrlWD~~l~~g~~~~~~~~~v~~AiL~~~~~~ll~~~d~~~il~~L 309 (345)
T 2qfz_A 230 QVHRHLDQHEVRYLQFAFRWMNNLLMREVPLRCTIRLWDTYQSEPDGFSHFHLYVCAAFLVRWRKEILEEKDFQELLLFL 309 (345)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHTTTTTTSCHHHHHHHHHHHTTSTTTTTTHHHHHHHHHHHHTHHHHHHCCCHHHHHHHH
T ss_pred HHHHHHHHcCCchhhHHHHHHHHHHcccCCHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHH
Confidence 45566667788888888888888888777888888888888777654332 222 222222 12356777777777
Q ss_pred hcCCCC
Q 007519 391 SNMVSR 396 (600)
Q Consensus 391 ~~~~~~ 396 (600)
+.+...
T Consensus 310 ~~~p~~ 315 (345)
T 2qfz_A 310 QNLPTA 315 (345)
T ss_dssp TSCSCT
T ss_pred HcCCCc
Confidence 777644
No 314
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=20.97 E-value=2.4e+02 Score=23.29 Aligned_cols=44 Identities=18% Similarity=0.241 Sum_probs=26.0
Q ss_pred hhHHHHHhhhcCC-CC-hh------hHHHHHHHHHhcCChHHHHHHhhcCCC
Q 007519 58 LSEARRLFEEMPE-RN-VV------SWTAMICGLADAGRVCEARKLFEEMPE 101 (600)
Q Consensus 58 ~~~A~~~~~~~~~-~~-~~------~~~~l~~~~~~~g~~~~A~~~~~~~~~ 101 (600)
++.|+.+++.+.+ .| .+ .--..+-.|.+.|.+++|.++|++...
T Consensus 94 LESAl~v~~~I~~e~~~lheei~~Llk~qAV~VCiekg~Fk~A~eiLkr~f~ 145 (211)
T 3bqo_A 94 LESALMIWGSIEKEHDKLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERIFG 145 (211)
T ss_dssp HHHHHHHHTTSCSCCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhc
Confidence 5678888887765 11 10 111223457777788888887777443
No 315
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=20.52 E-value=2.6e+02 Score=23.80 Aligned_cols=88 Identities=9% Similarity=-0.127 Sum_probs=44.2
Q ss_pred HHHhCCChhHHHHHHHHHHHCCCCCChh-------HHHHHHHHHh--cccchhhhHHHHHHHhhhc---------CCC-c
Q 007519 306 GLVQNELFVEATYLFMEMRAHGVPPLNA-------TFSVLFGAAG--ATANIDLGRQIHCVLMKTE---------SES-D 366 (600)
Q Consensus 306 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~-------~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~---------~~~-~ 366 (600)
..++.|+.+....+++.+.+.|..++.. ..+.|..+.. +.|+.+.+..+++.-...+ +.. +
T Consensus 11 ~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d 90 (260)
T 3jxi_A 11 DIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVY 90 (260)
T ss_dssp HHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCCSS
T ss_pred HHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcccccccc
Confidence 3456677777777777666666555533 2233443332 5566666666665432211 000 0
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhcCC
Q 007519 367 LILENCLISMYAKCGVIDNAYNIFSNMV 394 (600)
Q Consensus 367 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 394 (600)
..-. +.+...+..|+.+-+..+++.-.
T Consensus 91 ~~g~-t~L~~A~~~g~~~~v~~Ll~~ga 117 (260)
T 3jxi_A 91 YRGQ-TALHIAIERRCKHYVELLVEKGA 117 (260)
T ss_dssp EESB-CHHHHHHHTTCHHHHHHHHHTTC
T ss_pred cCCC-CHHHHHHHcCCHHHHHHHHhCCC
Confidence 0111 22333445677776666666543
No 316
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=20.20 E-value=3.3e+02 Score=21.65 Aligned_cols=46 Identities=13% Similarity=0.141 Sum_probs=26.8
Q ss_pred CChHHHHHHHhcCC----CC--ChhhHHHHHH------HHHhcCChHHHHHHHHHHHH
Q 007519 381 GVIDNAYNIFSNMV----SR--DLVSWNSMVM------GFSHHGLANETLKVFESMLE 426 (600)
Q Consensus 381 ~~~~~A~~~~~~~~----~~--~~~~~~~l~~------~~~~~~~~~~a~~~~~~m~~ 426 (600)
|++-+|.++++..- .+ ....|..||+ ...+.|+...|..++.+...
T Consensus 46 g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 46 GEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp TCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 55555555555443 12 2234444544 24567888888888887765
No 317
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=20.03 E-value=4.9e+02 Score=23.55 Aligned_cols=60 Identities=17% Similarity=0.145 Sum_probs=40.6
Q ss_pred HHhCCCCCCHH--HHHHHHHHHhhhhCCHHHHHHHHHHHHhhCCCCCCcHHHHhHHHHhhCCcHHHHHHHHHHhhcC
Q 007519 492 VLRLPFEPDHR--IWGALLGACGFCEGNAEIAEHAAKRLLELDPLNAPAHVVLCNIYAASGRHVEEHKLRMDMGLKG 566 (600)
Q Consensus 492 ~~~~~~~p~~~--~~~~l~~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 566 (600)
|....+.|... ++...+..+. +.+++..|-.+.++++++.| ++. ..+.|.++...-++.+
T Consensus 196 FT~c~LQp~H~~LaLr~AM~~a~-K~KNy~tAa~fArrLLel~p-~~~-------------~a~qArkil~~ce~~~ 257 (325)
T 3mv2_A 196 FTKAKLSPIHRTNALQVAMSQHF-KHKNFLQASYFAGEFLKIIS-SGP-------------RAEQARKIKNKADSMA 257 (325)
T ss_dssp GGGSCCCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCC-SSH-------------HHHHHHHHHHHHHTSC
T ss_pred hccCCCcHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHHhcCC-CHH-------------HHHHHHHHHHHHhcCC
Confidence 44444555433 4566666677 99999999999999999999 321 3345666666665543
Done!