BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007520
(600 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4HXT|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or329
Length = 252
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 98/178 (55%), Gaps = 7/178 (3%)
Query: 334 SGQRATIAKICDEVGLPKILQLLTSEDPDVQIHAVKVVANLAA-EDINQEKIVEEGGLDA 392
SG + I I D G+ +++LLTS D +VQ A + +AN+A+ D + IV+ GG++
Sbjct: 31 SGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEV 90
Query: 393 XXXXXRTSQNTTILRVASGAIANLAMNEMNQGL--IMSRGGGQLLAKTASKTDDPQTLRM 450
TS ++ + + A+ A+AN+A ++ + I+ GG ++L K + TD + +
Sbjct: 91 LVKLL-TSTDSEVQKEAARALANIASGP-DEAIKAIVDAGGVEVLVKLLTSTDS-EVQKE 147
Query: 451 VAGALANLC-GNEKLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFAKCESRAI 507
A ALAN+ G ++ + + G ++ L+ ++ S + +V + AR LAN A + AI
Sbjct: 148 AARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAI 205
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 61/112 (54%), Gaps = 3/112 (2%)
Query: 334 SGQRATIAKICDEVGLPKILQLLTSEDPDVQIHAVKVVANLAA-EDINQEKIVEEGGLDA 392
SG I I D G+ +++LLTS D +VQ A + +AN+A+ D + IV+ GG++
Sbjct: 115 SGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEV 174
Query: 393 XXXXXRTSQNTTILRVASGAIANLAMNEMNQ-GLIMSRGGGQLLAKTASKTD 443
TS ++ + + A+ A+AN+A + I+ GG ++L K + TD
Sbjct: 175 LVKLL-TSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTD 225
>pdb|4DB8|A Chain A, Designed Armadillo-Repeat Protein
pdb|4DB8|B Chain B, Designed Armadillo-Repeat Protein
pdb|4DB8|C Chain C, Designed Armadillo-Repeat Protein
pdb|4DB8|D Chain D, Designed Armadillo-Repeat Protein
Length = 252
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 91/177 (51%), Gaps = 9/177 (5%)
Query: 330 SRELSGQRATIAKICDEVGLPKILQLLTSEDPDVQIHAVKVVANLAAEDINQ-EKIVEEG 388
S+ LS I + D LP ++QLL+S + + A+ ++N+A+ Q + +++ G
Sbjct: 37 SQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAG 96
Query: 389 GLDAXXXXXRTSQNTTILRVASGAIANLAM--NEMNQGLIMSRGGGQLLAKTASKTDDPQ 446
L A +S N IL+ A A++N+A NE Q +I G L + S ++ Q
Sbjct: 97 ALPALVQLL-SSPNEQILQEALWALSNIASGGNEQIQAVI-DAGALPALVQLLSSPNE-Q 153
Query: 447 TLRMVAGALANLC--GNEKLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFAK 501
L+ AL+N+ GNE++ +++ GA+ AL+ ++ S N ++ + L+N A
Sbjct: 154 ILQEALWALSNIASGGNEQIQAVIDA-GALPALVQLLSSPNEQILQEALWALSNIAS 209
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 82/158 (51%), Gaps = 9/158 (5%)
Query: 349 LPKILQLLTSEDPDVQIHAVKVVANLAAEDINQ-EKIVEEGGLDAXXXXXRTSQNTTILR 407
LP++ Q L S+D Q+ A + + + ++ Q + +++ G L A +S N IL+
Sbjct: 14 LPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLL-SSPNEQILQ 72
Query: 408 VASGAIANLAM--NEMNQGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLC--GNEK 463
A A++N+A NE Q +I G L + S ++ Q L+ AL+N+ GNE+
Sbjct: 73 EALWALSNIASGGNEQIQAVI-DAGALPALVQLLSSPNE-QILQEALWALSNIASGGNEQ 130
Query: 464 LHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFAK 501
+ +++ GA+ AL+ ++ S N ++ + L+N A
Sbjct: 131 IQAVIDA-GALPALVQLLSSPNEQILQEALWALSNIAS 167
Score = 36.6 bits (83), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 76/149 (51%), Gaps = 9/149 (6%)
Query: 334 SGQRATIAKICDEVGLPKILQLLTSEDPDVQIHAVKVVANLAAEDINQ-EKIVEEGGLDA 392
SG I + D LP ++QLL+S + + A+ ++N+A+ Q + +++ G L A
Sbjct: 83 SGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPA 142
Query: 393 XXXXXRTSQNTTILRVASGAIANLAM--NEMNQGLIMSRGGGQLLAKTASKTDDPQTLRM 450
+S N IL+ A A++N+A NE Q +I G L + S ++ Q L+
Sbjct: 143 LVQLL-SSPNEQILQEALWALSNIASGGNEQIQAVI-DAGALPALVQLLSSPNE-QILQE 199
Query: 451 VAGALANLC--GNEKLHTMLEEDGAIKAL 477
AL+N+ GNE+ + +E GA++ L
Sbjct: 200 ALWALSNIASGGNEQKQAV-KEAGALEKL 227
>pdb|4DBA|A Chain A, Designed Armadillo Repeat Protein (Yiim3aii)
pdb|4DBA|B Chain B, Designed Armadillo Repeat Protein (Yiim3aii)
pdb|4DBA|C Chain C, Designed Armadillo Repeat Protein (Yiim3aii)
pdb|4DBA|D Chain D, Designed Armadillo Repeat Protein (Yiim3aii)
Length = 210
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 82/157 (52%), Gaps = 9/157 (5%)
Query: 349 LPKILQLLTSEDPDVQIHAVKVVANLAAEDINQ-EKIVEEGGLDAXXXXXRTSQNTTILR 407
LP++ Q L S+D Q+ A + + + ++ Q + +++ G L A +S N IL+
Sbjct: 14 LPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLL-SSPNEQILQ 72
Query: 408 VASGAIANLAM--NEMNQGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLC--GNEK 463
A A++N+A NE Q +I G L + S ++ Q L+ AL+N+ GNE+
Sbjct: 73 EALWALSNIASGGNEQIQAVI-DAGALPALVQLLSSPNE-QILQEALWALSNIASGGNEQ 130
Query: 464 LHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFA 500
+ +++ GA+ AL+ ++ S N ++ + L+N A
Sbjct: 131 IQAVIDA-GALPALVQLLSSPNEQILQEALWALSNIA 166
Score = 36.2 bits (82), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 78/153 (50%), Gaps = 9/153 (5%)
Query: 330 SRELSGQRATIAKICDEVGLPKILQLLTSEDPDVQIHAVKVVANLAAEDINQ-EKIVEEG 388
S+ LS I + D LP ++QLL+S + + A+ ++N+A+ Q + +++ G
Sbjct: 37 SQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAG 96
Query: 389 GLDAXXXXXRTSQNTTILRVASGAIANLAM--NEMNQGLIMSRGGGQLLAKTASKTDDPQ 446
L A +S N IL+ A A++N+A NE Q +I G L + S ++ Q
Sbjct: 97 ALPALVQLL-SSPNEQILQEALWALSNIASGGNEQIQAVI-DAGALPALVQLLSSPNE-Q 153
Query: 447 TLRMVAGALANLC--GNEKLHTMLEEDGAIKAL 477
L+ AL+N+ GNE+ + +E GA++ L
Sbjct: 154 ILQEALWALSNIASGGNEQKQAV-KEAGALEKL 185
>pdb|4DB6|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aii)
Length = 210
Score = 37.0 bits (84), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 76/149 (51%), Gaps = 9/149 (6%)
Query: 334 SGQRATIAKICDEVGLPKILQLLTSEDPDVQIHAVKVVANLAAEDINQ-EKIVEEGGLDA 392
SG I + D LP ++QLL+S + + A+ ++N+A+ Q + +++ G L A
Sbjct: 41 SGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPA 100
Query: 393 XXXXXRTSQNTTILRVASGAIANLAM--NEMNQGLIMSRGGGQLLAKTASKTDDPQTLRM 450
+S N IL+ A A++N+A NE Q +I G L + S ++ Q L+
Sbjct: 101 LVQLL-SSPNEQILQEALWALSNIASGGNEQIQAVI-DAGALPALVQLLSSPNE-QILQE 157
Query: 451 VAGALANLC--GNEKLHTMLEEDGAIKAL 477
AL+N+ GNE+ + +E GA++ L
Sbjct: 158 ALWALSNIASGGNEQKQAV-KEAGALEKL 185
>pdb|4DB9|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|B Chain B, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|C Chain C, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|D Chain D, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|E Chain E, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|F Chain F, Designed Armadillo Repeat Protein (Yiiim3aiii)
Length = 210
Score = 36.6 bits (83), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 75/149 (50%), Gaps = 9/149 (6%)
Query: 334 SGQRATIAKICDEVGLPKILQLLTSEDPDVQIHAVKVVANLAAEDINQ-EKIVEEGGLDA 392
SG I + D LP ++QLL+S + + A+ ++N+A+ Q + +++ G L A
Sbjct: 41 SGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPA 100
Query: 393 XXXXXRTSQNTTILRVASGAIANLAM--NEMNQGLIMSRGGGQLLAKTASKTDDPQTLRM 450
+S N IL+ A A++N+A NE Q +I G L + S ++ Q L+
Sbjct: 101 LVQLL-SSPNEQILQEALWALSNIASGGNEQIQAVI-DAGALPALVQLLSSPNE-QILQE 157
Query: 451 VAGALANLC--GNEKLHTMLEEDGAIKAL 477
AL+N+ GNE+ + +E GA AL
Sbjct: 158 ALWALSNIASGGNEQKQAV-KEAGAEPAL 185
Score = 32.3 bits (72), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 37/72 (51%)
Query: 334 SGQRATIAKICDEVGLPKILQLLTSEDPDVQIHAVKVVANLAAEDINQEKIVEEGGLDAX 393
SG I + D LP ++QLL+S + + A+ ++N+A+ Q++ V+E G +
Sbjct: 125 SGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGAEPA 184
Query: 394 XXXXRTSQNTTI 405
++S N I
Sbjct: 185 LEQLQSSPNEKI 196
>pdb|4B8J|A Chain A, Rimp_alpha1a
Length = 528
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 33/151 (21%), Positives = 64/151 (42%), Gaps = 2/151 (1%)
Query: 349 LPKILQLLTSED-PDVQIHAVKVVANLAAEDINQEKIVEEGGLDAXXXXXRTSQNTTILR 407
+P+ +Q LT ED P +Q A + N+A+ K+V + G S + +
Sbjct: 119 VPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVRE 178
Query: 408 VASGAIANLAMNEMN-QGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLCGNEKLHT 466
A A+ N+A + + L+++ G L ++ LR L+N C + +
Sbjct: 179 QAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPS 238
Query: 467 MLEEDGAIKALLAMVRSGNIDVIAQVARGLA 497
+ A+ AL ++ S + +V+ L+
Sbjct: 239 FEQTRPALPALARLIHSNDEEVLTDACWALS 269
Score = 29.6 bits (65), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 38/171 (22%), Positives = 69/171 (40%), Gaps = 22/171 (12%)
Query: 341 AKICDEVGLPKILQLLTSEDPDVQIHAVKVVANLA-AEDINQEKIVEEGGLDAXXXXXRT 399
A +C P++++LL P V I A++ V N+ +D + I++ L
Sbjct: 285 AGVC-----PRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQ 339
Query: 400 SQNTTILRVASGAIANLAMNE-------MNQGLIMSRGGGQL--LAKTASKTDDPQTLRM 450
+ +I + A I+N+ +N G+I G L L +TA +
Sbjct: 340 NLKKSIKKEACWTISNITAGNKDQIQAVINAGII-----GPLVNLLQTAEFDIKKEAAWA 394
Query: 451 VAGALANLCGNEKLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFAK 501
++ A + G+ L +G IK L ++ +I ++ GL N K
Sbjct: 395 ISNATSG--GSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILK 443
>pdb|3NOW|A Chain A, Unc-45 From Drosophila Melanogaster
Length = 810
Score = 32.7 bits (73), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 32/154 (20%), Positives = 66/154 (42%), Gaps = 28/154 (18%)
Query: 467 MLEEDGAIKALLAMVRSGNIDVIAQVARGLANFAKCESRA-----IVQGQRKGRSHLMED 521
++E+ +I AL+ + R GN + V N + +++ + + H+ E+
Sbjct: 416 LIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEE 475
Query: 522 SALEWLIANSKTNSASTRRHVELALCHLAQNED-NARDFISR------------------ 562
L+ + +K + + ALC LA+ E N+++ I+R
Sbjct: 476 HELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCGLKELRGKVVQE 535
Query: 563 GGAKELVQISIESS----REDIRNLAKKTMKSNP 592
GG K L+++++E + R + LA+ + NP
Sbjct: 536 GGVKALLRMALEGTEKGKRHATQALARIGITINP 569
>pdb|2YNS|A Chain A, Rimp_alpha_b54nls
pdb|2YNS|B Chain B, Rimp_alpha_b54nls
pdb|4B8O|A Chain A, Rimp_alpha_sv40tagnls
pdb|4B8P|A Chain A, Rimp_alpha_a89nls
pdb|4B8P|B Chain B, Rimp_alpha_a89nls
Length = 490
Score = 32.3 bits (72), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 33/151 (21%), Positives = 64/151 (42%), Gaps = 2/151 (1%)
Query: 349 LPKILQLLTSED-PDVQIHAVKVVANLAAEDINQEKIVEEGGLDAXXXXXRTSQNTTILR 407
+P+ +Q LT ED P +Q A + N+A+ K+V + G S + +
Sbjct: 81 VPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVRE 140
Query: 408 VASGAIANLAMNEMN-QGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLCGNEKLHT 466
A A+ N+A + + L+++ G L ++ LR L+N C + +
Sbjct: 141 QAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPS 200
Query: 467 MLEEDGAIKALLAMVRSGNIDVIAQVARGLA 497
+ A+ AL ++ S + +V+ L+
Sbjct: 201 FEQTRPALPALARLIHSNDEEVLTDACWALS 231
>pdb|1TCU|A Chain A, Crystal Structure Of The Purine Nucleoside Phosphorylase
From Schistosoma Mansoni In Complex With Phosphate And
Acetate
pdb|1TCU|B Chain B, Crystal Structure Of The Purine Nucleoside Phosphorylase
From Schistosoma Mansoni In Complex With Phosphate And
Acetate
pdb|1TCU|C Chain C, Crystal Structure Of The Purine Nucleoside Phosphorylase
From Schistosoma Mansoni In Complex With Phosphate And
Acetate
pdb|1TCV|A Chain A, Crystal Structure Of The Purine Nucleoside Phosphorylase
From Schistosoma Mansoni In Complex With Non-detergent
Sulfobetaine 195 And Acetate
pdb|1TCV|B Chain B, Crystal Structure Of The Purine Nucleoside Phosphorylase
From Schistosoma Mansoni In Complex With Non-detergent
Sulfobetaine 195 And Acetate
pdb|1TCV|C Chain C, Crystal Structure Of The Purine Nucleoside Phosphorylase
From Schistosoma Mansoni In Complex With Non-detergent
Sulfobetaine 195 And Acetate
pdb|1TD1|A Chain A, Crystal Structure Of The Purine Nucleoside Phosphorylase
From Schistosoma Mansoni In Complex With Acetate
pdb|1TD1|B Chain B, Crystal Structure Of The Purine Nucleoside Phosphorylase
From Schistosoma Mansoni In Complex With Acetate
pdb|1TD1|C Chain C, Crystal Structure Of The Purine Nucleoside Phosphorylase
From Schistosoma Mansoni In Complex With Acetate
pdb|3FNQ|A Chain A, Crystal Structure Of Schistosoma Purine Nucleoside
Phosphorylase In Complex With Hypoxanthine
pdb|3FNQ|B Chain B, Crystal Structure Of Schistosoma Purine Nucleoside
Phosphorylase In Complex With Hypoxanthine
pdb|3FNQ|C Chain C, Crystal Structure Of Schistosoma Purine Nucleoside
Phosphorylase In Complex With Hypoxanthine
pdb|3DJF|A Chain A, Crystal Structure Of Schistosoma Mansoni Purine Nucleoside
Phosphorylase In A Complex With Bcx-34
pdb|3DJF|B Chain B, Crystal Structure Of Schistosoma Mansoni Purine Nucleoside
Phosphorylase In A Complex With Bcx-34
pdb|3DJF|C Chain C, Crystal Structure Of Schistosoma Mansoni Purine Nucleoside
Phosphorylase In A Complex With Bcx-34
pdb|3E0Q|A Chain A, Crystal Structure Of Schistosoma Mansoni Purine Nucleoside
Phosphorylase Complexed With A Novel Monocyclic
Inhibitor
pdb|3E0Q|B Chain B, Crystal Structure Of Schistosoma Mansoni Purine Nucleoside
Phosphorylase Complexed With A Novel Monocyclic
Inhibitor
pdb|3E0Q|C Chain C, Crystal Structure Of Schistosoma Mansoni Purine Nucleoside
Phosphorylase Complexed With A Novel Monocyclic
Inhibitor
pdb|3E9R|A Chain A, Crystal Structure Of Purine Nucleoside Phosphorylase From
Schistosoma Mansoni In Complex With Adenine
pdb|3E9R|B Chain B, Crystal Structure Of Purine Nucleoside Phosphorylase From
Schistosoma Mansoni In Complex With Adenine
pdb|3E9R|C Chain C, Crystal Structure Of Purine Nucleoside Phosphorylase From
Schistosoma Mansoni In Complex With Adenine
pdb|3E9Z|A Chain A, Crystal Structure Of Purine Nucleoside Phosphorylase From
Schistosoma Mansoni In Complex With 6-Chloroguanine
pdb|3E9Z|B Chain B, Crystal Structure Of Purine Nucleoside Phosphorylase From
Schistosoma Mansoni In Complex With 6-Chloroguanine
pdb|3E9Z|C Chain C, Crystal Structure Of Purine Nucleoside Phosphorylase From
Schistosoma Mansoni In Complex With 6-Chloroguanine
pdb|3F8W|A Chain A, Crystal Structure Of Schistosoma Mansoni Purine Nucleoside
Phosphorylase In Complex With Adenosine
pdb|3F8W|B Chain B, Crystal Structure Of Schistosoma Mansoni Purine Nucleoside
Phosphorylase In Complex With Adenosine
pdb|3F8W|C Chain C, Crystal Structure Of Schistosoma Mansoni Purine Nucleoside
Phosphorylase In Complex With Adenosine
pdb|3FAZ|A Chain A, Crystal Structure Of Schistosoma Mansoni Purine Nucleoside
Phosphorylase In Complex With Inosine
pdb|3FAZ|B Chain B, Crystal Structure Of Schistosoma Mansoni Purine Nucleoside
Phosphorylase In Complex With Inosine
pdb|3FAZ|C Chain C, Crystal Structure Of Schistosoma Mansoni Purine Nucleoside
Phosphorylase In Complex With Inosine
pdb|3FB1|A Chain A, Crystal Structure Of Purine Nucleoside Phosphorylase In
Complex With Ribose-1-Phosphate
pdb|3FB1|B Chain B, Crystal Structure Of Purine Nucleoside Phosphorylase In
Complex With Ribose-1-Phosphate
pdb|3FB1|C Chain C, Crystal Structure Of Purine Nucleoside Phosphorylase In
Complex With Ribose-1-Phosphate
pdb|3IEX|A Chain A, Schistosoma Purine Nucleoside Phosphorylase In Complex
With Guanosine
pdb|3IEX|B Chain B, Schistosoma Purine Nucleoside Phosphorylase In Complex
With Guanosine
pdb|3IEX|C Chain C, Schistosoma Purine Nucleoside Phosphorylase In Complex
With Guanosine
Length = 287
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 28/51 (54%), Gaps = 6/51 (11%)
Query: 344 CDEVGLPKILQLLTSEDPDVQIHAVKVVANLAAEDI------NQEKIVEEG 388
CD VG+ I +++ + +Q+ AV +V N++ D+ N E+++ G
Sbjct: 216 CDVVGMSTIPEVVIARHCGIQVFAVSLVTNISVLDVESDLKPNHEEVLATG 266
>pdb|3OZ6|A Chain A, Crystal Structure Of Mapk From Cryptosporidium Parvum,
Cgd2_1960
pdb|3OZ6|B Chain B, Crystal Structure Of Mapk From Cryptosporidium Parvum,
Cgd2_1960
Length = 388
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 46/87 (52%), Gaps = 3/87 (3%)
Query: 206 VKKLLSDYQNSNQGQKEVHELCVKLKETRQLHESAVYEVQTLKSEY-KNLLEEKETMSDE 264
VKK+ +QNS Q+ E+ + L E HE+ V + L+++ +++ + M +
Sbjct: 39 VKKIFDAFQNSTDAQRTFREIMI-LTELSG-HENIVNLLNVLRADNDRDVYLVFDYMETD 96
Query: 265 LQAARQRLLVEEKQRKAIEYELVKLKK 291
L A + ++E ++ + Y+L+K+ K
Sbjct: 97 LHAVIRANILEPVHKQYVVYQLIKVIK 123
>pdb|2QVS|B Chain B, Crystal Structure Of Type Iia Holoenzyme Of Camp-Dependent
Protein Kinase
Length = 310
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 505 RAIVQGQRKGRSHLMEDSALEWLI-ANSKTNSASTRRHVELALCHLAQ 551
R I QG++ +++E + LI + +K+N + VE+A CH Q
Sbjct: 193 RIIAQGEKADSFYIIESGEVSILIRSKTKSNKNGGNQEVEIAHCHKGQ 240
>pdb|2GL7|A Chain A, Crystal Structure Of A Beta-CateninBCL9TCF4 COMPLEX
pdb|2GL7|D Chain D, Crystal Structure Of A Beta-CateninBCL9TCF4 COMPLEX
Length = 550
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 58/139 (41%), Gaps = 6/139 (4%)
Query: 349 LPKILQLLTSEDPDVQIHAVKVVANLAAEDI-NQEKIVEEGGLDAXX-XXXRTSQNTTIL 406
L ++QLL S+D +V A +++NL + N+ + + GG++A R I
Sbjct: 266 LGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDIT 325
Query: 407 RVASGAIANLAMN----EMNQGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLCGNE 462
A A+ +L EM Q + G ++ K ++ G + NL
Sbjct: 326 EPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCP 385
Query: 463 KLHTMLEEDGAIKALLAMV 481
H L E GAI L+ ++
Sbjct: 386 ANHAPLREQGAIPRLVQLL 404
>pdb|2QRV|A Chain A, Structure Of Dnmt3a-Dnmt3l C-Terminal Domain Complex
pdb|2QRV|D Chain D, Structure Of Dnmt3a-Dnmt3l C-Terminal Domain Complex
pdb|2QRV|E Chain E, Structure Of Dnmt3a-Dnmt3l C-Terminal Domain Complex
pdb|2QRV|H Chain H, Structure Of Dnmt3a-Dnmt3l C-Terminal Domain Complex
Length = 295
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 13/73 (17%)
Query: 85 NDKYEFEKQLRESQISYDESMRNLVTRSE------------FL-EKENAHLELEVEKILG 131
NDK E ++ L +I+ +R + TRS F+ EKE+ E+E++ G
Sbjct: 193 NDKLELQECLEHGRIAKFSKVRTITTRSNSIKQGKDQHFPVFMNEKEDILWCTEMERVFG 252
Query: 132 ELNHQKDQNNLKR 144
H D +N+ R
Sbjct: 253 FPVHYTDVSNMSR 265
>pdb|1I7X|A Chain A, Beta-CateninE-Cadherin Complex
pdb|1I7X|C Chain C, Beta-CateninE-Cadherin Complex
pdb|1I7W|A Chain A, Beta-CateninPHOSPHORYLATED E-Cadherin Complex
pdb|1I7W|C Chain C, Beta-CateninPHOSPHORYLATED E-Cadherin Complex
pdb|1JPP|A Chain A, The Structure Of A Beta-Catenin Binding Repeat From
Adenomatous Polyposis Coli (Apc) In Complex With
Beta-Catenin
pdb|1JPP|B Chain B, The Structure Of A Beta-Catenin Binding Repeat From
Adenomatous Polyposis Coli (Apc) In Complex With
Beta-Catenin
pdb|1M1E|A Chain A, Beta-Catenin Armadillo Repeat Domain Bound To Icat
pdb|1V18|A Chain A, The Crystal Structure Of Beta-Catenin Armadillo Repeat
Complexed With A Phosphorylated Apc 20mer Repeat
Length = 538
Score = 29.3 bits (64), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 58/139 (41%), Gaps = 6/139 (4%)
Query: 349 LPKILQLLTSEDPDVQIHAVKVVANLAAEDI-NQEKIVEEGGLDAXX-XXXRTSQNTTIL 406
L ++QLL S+D +V A +++NL + N+ + + GG++A R I
Sbjct: 269 LGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDIT 328
Query: 407 RVASGAIANLAMN----EMNQGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLCGNE 462
A A+ +L EM Q + G ++ K ++ G + NL
Sbjct: 329 EPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCP 388
Query: 463 KLHTMLEEDGAIKALLAMV 481
H L E GAI L+ ++
Sbjct: 389 ANHAPLREQGAIPRLVQLL 407
>pdb|3OUW|A Chain A, Structure Of Beta-Catenin With Lef-1
pdb|3OUX|A Chain A, Structure Of Beta-Catenin With Phosphorylated Lef-1
Length = 540
Score = 29.3 bits (64), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 58/139 (41%), Gaps = 6/139 (4%)
Query: 349 LPKILQLLTSEDPDVQIHAVKVVANLAAEDI-NQEKIVEEGGLDAXX-XXXRTSQNTTIL 406
L ++QLL S+D +V A +++NL + N+ + + GG++A R I
Sbjct: 271 LGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDIT 330
Query: 407 RVASGAIANLAMN----EMNQGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLCGNE 462
A A+ +L EM Q + G ++ K ++ G + NL
Sbjct: 331 EPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCP 390
Query: 463 KLHTMLEEDGAIKALLAMV 481
H L E GAI L+ ++
Sbjct: 391 ANHAPLREQGAIPRLVQLL 409
>pdb|2Z6G|A Chain A, Crystal Structure Of A Full-Length Zebrafish Beta-Catenin
Length = 780
Score = 29.3 bits (64), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 58/139 (41%), Gaps = 6/139 (4%)
Query: 349 LPKILQLLTSEDPDVQIHAVKVVANLAAEDI-NQEKIVEEGGLDAXX-XXXRTSQNTTIL 406
L ++QLL S+D +V A +++NL + N+ + + GG++A R I
Sbjct: 401 LGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDIT 460
Query: 407 RVASGAIANLAMN----EMNQGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLCGNE 462
A A+ +L EM Q + G ++ K ++ G + NL
Sbjct: 461 EPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCP 520
Query: 463 KLHTMLEEDGAIKALLAMV 481
H L E GAI L+ ++
Sbjct: 521 ANHAPLREQGAIPRLVQLL 539
>pdb|1JPW|A Chain A, Crystal Structure Of A Human Tcf-4 BETA-Catenin Complex
pdb|1JPW|B Chain B, Crystal Structure Of A Human Tcf-4 BETA-Catenin Complex
pdb|1JPW|C Chain C, Crystal Structure Of A Human Tcf-4 BETA-Catenin Complex
Length = 540
Score = 29.3 bits (64), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 58/139 (41%), Gaps = 6/139 (4%)
Query: 349 LPKILQLLTSEDPDVQIHAVKVVANLAAEDI-NQEKIVEEGGLDAXX-XXXRTSQNTTIL 406
L ++QLL S+D +V A +++NL + N+ + + GG++A R I
Sbjct: 272 LGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDIT 331
Query: 407 RVASGAIANLAMN----EMNQGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLCGNE 462
A A+ +L EM Q + G ++ K ++ G + NL
Sbjct: 332 EPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCP 391
Query: 463 KLHTMLEEDGAIKALLAMV 481
H L E GAI L+ ++
Sbjct: 392 ANHAPLREQGAIPRLVQLL 410
>pdb|2Z6H|A Chain A, Crystal Structure Of Beta-Catenin Armadillo Repeat Region
And Its C-Terminal Domain
Length = 644
Score = 29.3 bits (64), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 58/139 (41%), Gaps = 6/139 (4%)
Query: 349 LPKILQLLTSEDPDVQIHAVKVVANLAAEDI-NQEKIVEEGGLDAXX-XXXRTSQNTTIL 406
L ++QLL S+D +V A +++NL + N+ + + GG++A R I
Sbjct: 265 LGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDIT 324
Query: 407 RVASGAIANLAMN----EMNQGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLCGNE 462
A A+ +L EM Q + G ++ K ++ G + NL
Sbjct: 325 EPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCP 384
Query: 463 KLHTMLEEDGAIKALLAMV 481
H L E GAI L+ ++
Sbjct: 385 ANHAPLREQGAIPRLVQLL 403
>pdb|1QZ7|A Chain A, Beta-Catenin Binding Domain Of Axin In Complex With Beta-
Catenin
Length = 533
Score = 29.3 bits (64), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 58/139 (41%), Gaps = 6/139 (4%)
Query: 349 LPKILQLLTSEDPDVQIHAVKVVANLAAEDI-NQEKIVEEGGLDAXX-XXXRTSQNTTIL 406
L ++QLL S+D +V A +++NL + N+ + + GG++A R I
Sbjct: 270 LGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDIT 329
Query: 407 RVASGAIANLAMN----EMNQGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLCGNE 462
A A+ +L EM Q + G ++ K ++ G + NL
Sbjct: 330 EPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCP 389
Query: 463 KLHTMLEEDGAIKALLAMV 481
H L E GAI L+ ++
Sbjct: 390 ANHAPLREQGAIPRLVQLL 408
>pdb|1G3J|A Chain A, Crystal Structure Of The Xtcf3-CbdBETA-Catenin Armadillo
Repeat Complex
pdb|1G3J|C Chain C, Crystal Structure Of The Xtcf3-CbdBETA-Catenin Armadillo
Repeat Complex
pdb|1TH1|A Chain A, Beta-Catenin In Complex With A Phosphorylated Apc 20aa
Repeat Fragment
pdb|1TH1|B Chain B, Beta-Catenin In Complex With A Phosphorylated Apc 20aa
Repeat Fragment
Length = 532
Score = 28.9 bits (63), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 58/139 (41%), Gaps = 6/139 (4%)
Query: 349 LPKILQLLTSEDPDVQIHAVKVVANLAAEDI-NQEKIVEEGGLDAXX-XXXRTSQNTTIL 406
L ++QLL S+D +V A +++NL + N+ + + GG++A R I
Sbjct: 270 LGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDIT 329
Query: 407 RVASGAIANLAMN----EMNQGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLCGNE 462
A A+ +L EM Q + G ++ K ++ G + NL
Sbjct: 330 EPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCP 389
Query: 463 KLHTMLEEDGAIKALLAMV 481
H L E GAI L+ ++
Sbjct: 390 ANHAPLREQGAIPRLVQLL 408
>pdb|3TX7|A Chain A, Crystal Structure Of Lrh-1BETA-Catenin Complex
Length = 527
Score = 28.9 bits (63), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 58/139 (41%), Gaps = 6/139 (4%)
Query: 349 LPKILQLLTSEDPDVQIHAVKVVANLAAEDI-NQEKIVEEGGLDAXX-XXXRTSQNTTIL 406
L ++QLL S+D +V A +++NL + N+ + + GG++A R I
Sbjct: 266 LGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDIT 325
Query: 407 RVASGAIANLAMN----EMNQGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLCGNE 462
A A+ +L EM Q + G ++ K ++ G + NL
Sbjct: 326 EPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCP 385
Query: 463 KLHTMLEEDGAIKALLAMV 481
H L E GAI L+ ++
Sbjct: 386 ANHAPLREQGAIPRLVQLL 404
>pdb|2BCT|A Chain A, The Armadillo Repeat Region From Murine Beta-Catenin
Length = 516
Score = 28.9 bits (63), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 58/139 (41%), Gaps = 6/139 (4%)
Query: 349 LPKILQLLTSEDPDVQIHAVKVVANLAAEDI-NQEKIVEEGGLDAXX-XXXRTSQNTTIL 406
L ++QLL S+D +V A +++NL + N+ + + GG++A R I
Sbjct: 253 LGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDIT 312
Query: 407 RVASGAIANLAMN----EMNQGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLCGNE 462
A A+ +L EM Q + G ++ K ++ G + NL
Sbjct: 313 EPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCP 372
Query: 463 KLHTMLEEDGAIKALLAMV 481
H L E GAI L+ ++
Sbjct: 373 ANHAPLREQGAIPRLVQLL 391
>pdb|1T08|A Chain A, Crystal Structure Of Beta-CateninICAT HELICAL
DomainUNPHOSPHORYLATED APC R3
Length = 519
Score = 28.9 bits (63), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 58/139 (41%), Gaps = 6/139 (4%)
Query: 349 LPKILQLLTSEDPDVQIHAVKVVANLAAEDI-NQEKIVEEGGLDAXX-XXXRTSQNTTIL 406
L ++QLL S+D +V A +++NL + N+ + + GG++A R I
Sbjct: 257 LGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDIT 316
Query: 407 RVASGAIANLAMN----EMNQGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLCGNE 462
A A+ +L EM Q + G ++ K ++ G + NL
Sbjct: 317 EPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCP 376
Query: 463 KLHTMLEEDGAIKALLAMV 481
H L E GAI L+ ++
Sbjct: 377 ANHAPLREQGAIPRLVQLL 395
>pdb|4DJS|A Chain A, Structure Of Beta-Catenin In Complex With A Stapled
Peptide Inhibitor
Length = 518
Score = 28.9 bits (63), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 58/139 (41%), Gaps = 6/139 (4%)
Query: 349 LPKILQLLTSEDPDVQIHAVKVVANLAAEDI-NQEKIVEEGGLDAXX-XXXRTSQNTTIL 406
L ++QLL S+D +V A +++NL + N+ + + GG++A R I
Sbjct: 255 LGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDIT 314
Query: 407 RVASGAIANLAMN----EMNQGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLCGNE 462
A A+ +L EM Q + G ++ K ++ G + NL
Sbjct: 315 EPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCP 374
Query: 463 KLHTMLEEDGAIKALLAMV 481
H L E GAI L+ ++
Sbjct: 375 ANHAPLREQGAIPRLVQLL 393
>pdb|1JDH|A Chain A, Crystal Structure Of Beta-Catenin And Htcf-4
Length = 529
Score = 28.9 bits (63), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 58/139 (41%), Gaps = 6/139 (4%)
Query: 349 LPKILQLLTSEDPDVQIHAVKVVANLAAEDI-NQEKIVEEGGLDAXX-XXXRTSQNTTIL 406
L ++QLL S+D +V A +++NL + N+ + + GG++A R I
Sbjct: 268 LGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDIT 327
Query: 407 RVASGAIANLAMN----EMNQGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLCGNE 462
A A+ +L EM Q + G ++ K ++ G + NL
Sbjct: 328 EPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCP 387
Query: 463 KLHTMLEEDGAIKALLAMV 481
H L E GAI L+ ++
Sbjct: 388 ANHAPLREQGAIPRLVQLL 406
>pdb|1LUJ|A Chain A, Crystal Structure Of The Beta-CateninICAT COMPLEX
Length = 514
Score = 28.9 bits (63), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 58/139 (41%), Gaps = 6/139 (4%)
Query: 349 LPKILQLLTSEDPDVQIHAVKVVANLAAEDI-NQEKIVEEGGLDAXX-XXXRTSQNTTIL 406
L ++QLL S+D +V A +++NL + N+ + + GG++A R I
Sbjct: 253 LGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDIT 312
Query: 407 RVASGAIANLAMN----EMNQGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLCGNE 462
A A+ +L EM Q + G ++ K ++ G + NL
Sbjct: 313 EPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCP 372
Query: 463 KLHTMLEEDGAIKALLAMV 481
H L E GAI L+ ++
Sbjct: 373 ANHAPLREQGAIPRLVQLL 391
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.311 0.127 0.336
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,542,118
Number of Sequences: 62578
Number of extensions: 601816
Number of successful extensions: 2140
Number of sequences better than 100.0: 131
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 111
Number of HSP's that attempted gapping in prelim test: 1973
Number of HSP's gapped (non-prelim): 243
length of query: 600
length of database: 14,973,337
effective HSP length: 104
effective length of query: 496
effective length of database: 8,465,225
effective search space: 4198751600
effective search space used: 4198751600
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 54 (25.4 bits)