Query 007520
Match_columns 600
No_of_seqs 285 out of 2035
Neff 7.2
Searched_HMMs 46136
Date Thu Mar 28 11:43:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007520.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007520hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0166 Karyopherin (importin) 99.9 5.9E-24 1.3E-28 229.0 24.2 279 306-593 106-394 (514)
2 KOG4224 Armadillo repeat prote 99.9 7.8E-25 1.7E-29 222.1 14.0 274 306-590 82-360 (550)
3 COG5064 SRP1 Karyopherin (impo 99.9 6.7E-24 1.5E-28 213.7 19.2 274 306-590 111-396 (526)
4 PLN03200 cellulose synthase-in 99.9 5.6E-23 1.2E-27 249.3 29.5 273 306-587 443-759 (2102)
5 PLN03200 cellulose synthase-in 99.9 6.5E-23 1.4E-27 248.8 29.1 273 306-589 401-719 (2102)
6 KOG4224 Armadillo repeat prote 99.9 1.5E-22 3.2E-27 205.6 20.5 279 306-595 123-410 (550)
7 KOG0166 Karyopherin (importin) 99.9 1.5E-21 3.3E-26 210.4 25.2 297 281-590 125-433 (514)
8 COG5064 SRP1 Karyopherin (impo 99.8 7.5E-20 1.6E-24 184.7 18.2 270 306-588 154-438 (526)
9 PF05804 KAP: Kinesin-associat 99.8 2.5E-18 5.4E-23 194.6 29.0 277 306-593 287-611 (708)
10 KOG4199 Uncharacterized conser 99.8 6.7E-18 1.4E-22 170.6 27.3 397 168-597 26-451 (461)
11 KOG2122 Beta-catenin-binding p 99.8 2.7E-16 5.8E-21 180.3 28.8 256 333-595 325-603 (2195)
12 PF05804 KAP: Kinesin-associat 99.7 3E-16 6.4E-21 177.8 25.7 244 332-593 275-520 (708)
13 KOG1048 Neural adherens juncti 99.7 5.1E-16 1.1E-20 172.5 20.7 281 307-589 231-637 (717)
14 KOG4199 Uncharacterized conser 99.7 9.8E-14 2.1E-18 140.7 27.8 261 307-576 102-385 (461)
15 KOG2122 Beta-catenin-binding p 99.6 4.2E-15 9E-20 170.8 14.3 212 334-553 380-603 (2195)
16 PF04826 Arm_2: Armadillo-like 99.5 9.3E-13 2E-17 133.6 19.1 195 343-551 8-205 (254)
17 PF04826 Arm_2: Armadillo-like 99.5 1.7E-12 3.7E-17 131.7 18.2 182 384-579 8-191 (254)
18 KOG1048 Neural adherens juncti 99.4 2.6E-12 5.6E-17 143.3 14.3 194 348-551 234-452 (717)
19 cd00020 ARM Armadillo/beta-cat 99.3 4.4E-11 9.5E-16 105.9 14.4 118 425-551 2-120 (120)
20 KOG1222 Kinesin associated pro 99.3 4.8E-10 1E-14 118.5 22.5 261 307-578 302-605 (791)
21 cd00020 ARM Armadillo/beta-cat 99.3 6.4E-11 1.4E-15 104.9 13.3 116 342-459 2-119 (120)
22 PRK09687 putative lyase; Provi 99.1 4.2E-09 9.2E-14 108.9 20.4 241 306-590 20-279 (280)
23 PF10508 Proteasom_PSMB: Prote 99.1 1.1E-08 2.4E-13 114.3 24.1 273 307-591 75-364 (503)
24 PF10508 Proteasom_PSMB: Prote 99.1 8.9E-09 1.9E-13 115.1 22.7 215 350-576 41-256 (503)
25 KOG4500 Rho/Rac GTPase guanine 99.1 4.1E-09 9E-14 110.4 17.0 264 306-578 84-417 (604)
26 KOG0240 Kinesin (SMY1 subfamil 99.0 2.6E-08 5.5E-13 107.8 20.7 201 1-238 329-534 (607)
27 PRK09687 putative lyase; Provi 99.0 3.7E-08 8E-13 101.9 18.7 167 345-550 21-187 (280)
28 PF03224 V-ATPase_H_N: V-ATPas 98.9 9.6E-08 2.1E-12 100.4 20.9 225 349-583 57-304 (312)
29 KOG4500 Rho/Rac GTPase guanine 98.9 3.2E-08 7E-13 103.9 16.4 238 344-590 84-387 (604)
30 KOG2160 Armadillo/beta-catenin 98.9 5.2E-08 1.1E-12 101.2 17.7 180 323-502 97-283 (342)
31 PF03224 V-ATPase_H_N: V-ATPas 98.9 4.3E-08 9.3E-13 103.1 16.4 189 348-543 106-306 (312)
32 cd00256 VATPase_H VATPase_H, r 98.8 1.5E-07 3.3E-12 101.8 18.1 199 352-550 148-424 (429)
33 KOG2160 Armadillo/beta-catenin 98.8 2.8E-07 6.2E-12 95.8 18.8 185 358-551 94-282 (342)
34 KOG1222 Kinesin associated pro 98.7 3.2E-07 7E-12 97.5 16.4 204 361-577 277-481 (791)
35 cd00256 VATPase_H VATPase_H, r 98.7 1.8E-06 3.9E-11 93.6 22.1 255 333-588 82-420 (429)
36 KOG2973 Uncharacterized conser 98.7 1.9E-06 4.1E-11 87.7 20.3 261 312-586 6-308 (353)
37 PRK13800 putative oxidoreducta 98.6 2.6E-06 5.6E-11 101.8 22.8 55 525-590 810-864 (897)
38 KOG3678 SARM protein (with ste 98.6 1.1E-06 2.5E-11 93.1 16.6 249 306-576 177-436 (832)
39 KOG3678 SARM protein (with ste 98.6 5.9E-07 1.3E-11 95.2 14.3 175 381-565 173-350 (832)
40 KOG0946 ER-Golgi vesicle-tethe 98.6 5E-06 1.1E-10 93.1 21.8 270 307-586 20-339 (970)
41 KOG4646 Uncharacterized conser 98.6 3E-07 6.5E-12 83.0 9.9 150 388-546 16-165 (173)
42 PRK13800 putative oxidoreducta 98.6 3.7E-06 8E-11 100.5 21.5 151 392-590 746-896 (897)
43 KOG2759 Vacuolar H+-ATPase V1 98.6 9.4E-07 2E-11 93.2 14.1 193 358-550 168-437 (442)
44 KOG4646 Uncharacterized conser 98.5 2.3E-06 5E-11 77.3 12.5 131 349-481 18-150 (173)
45 KOG0168 Putative ubiquitin fus 98.4 4.5E-06 9.7E-11 94.1 16.2 216 349-575 169-392 (1051)
46 KOG0168 Putative ubiquitin fus 98.4 1.1E-05 2.4E-10 91.1 18.5 230 336-575 200-438 (1051)
47 KOG1293 Proteins containing ar 98.3 9.4E-06 2E-10 89.7 14.3 150 396-553 384-535 (678)
48 PF01602 Adaptin_N: Adaptin N 98.2 3.8E-05 8.3E-10 86.0 18.3 216 310-553 80-298 (526)
49 KOG1293 Proteins containing ar 98.2 1.1E-05 2.4E-10 89.1 13.0 144 357-503 387-534 (678)
50 KOG2973 Uncharacterized conser 98.2 4.2E-05 9.1E-10 78.0 16.0 208 349-573 5-225 (353)
51 PF00038 Filament: Intermediat 98.2 0.002 4.4E-08 67.6 29.5 197 34-239 46-255 (312)
52 KOG0161 Myosin class II heavy 98.1 0.0042 9.1E-08 77.9 33.3 227 45-275 939-1172(1930)
53 KOG2759 Vacuolar H+-ATPase V1 98.1 0.00011 2.3E-09 78.0 16.7 238 349-587 116-432 (442)
54 PF01602 Adaptin_N: Adaptin N 98.1 7E-05 1.5E-09 83.9 16.6 245 308-585 113-361 (526)
55 KOG0161 Myosin class II heavy 98.0 0.01 2.3E-07 74.5 33.3 172 17-192 1013-1201(1930)
56 KOG0946 ER-Golgi vesicle-tethe 98.0 0.00043 9.4E-09 78.1 19.3 214 349-574 24-265 (970)
57 KOG0996 Structural maintenance 97.8 0.021 4.5E-07 67.5 30.2 105 168-272 467-572 (1293)
58 PF00514 Arm: Armadillo/beta-c 97.8 3.7E-05 8E-10 55.6 5.3 40 461-500 1-40 (41)
59 KOG0996 Structural maintenance 97.8 0.014 3E-07 68.9 28.6 152 100-269 437-590 (1293)
60 KOG2171 Karyopherin (importin) 97.8 0.00045 9.7E-09 81.1 16.3 223 314-551 353-594 (1075)
61 PF05536 Neurochondrin: Neuroc 97.8 0.0022 4.8E-08 72.5 21.2 197 348-550 6-212 (543)
62 PF00514 Arm: Armadillo/beta-c 97.8 5.4E-05 1.2E-09 54.8 5.3 40 512-551 2-41 (41)
63 KOG2171 Karyopherin (importin) 97.7 0.0016 3.5E-08 76.6 19.0 173 353-540 354-535 (1075)
64 TIGR02270 conserved hypothetic 97.7 0.0036 7.8E-08 68.3 20.4 232 307-592 52-298 (410)
65 PF07888 CALCOCO1: Calcium bin 97.7 0.14 3E-06 57.2 32.2 81 175-255 278-359 (546)
66 TIGR02168 SMC_prok_B chromosom 97.6 0.076 1.6E-06 65.4 33.3 43 223-265 435-477 (1179)
67 PTZ00429 beta-adaptin; Provisi 97.6 0.0098 2.1E-07 69.4 23.5 223 308-552 31-286 (746)
68 KOG2734 Uncharacterized conser 97.5 0.014 3E-07 62.5 21.2 229 333-572 111-370 (536)
69 KOG4151 Myosin assembly protei 97.5 0.00072 1.6E-08 76.8 12.2 238 335-585 492-733 (748)
70 PF09726 Macoilin: Transmembra 97.5 0.046 9.9E-07 63.4 27.0 18 17-34 418-435 (697)
71 PRK02224 chromosome segregatio 97.5 0.19 4.1E-06 60.4 32.9 16 48-63 205-220 (880)
72 KOG0933 Structural maintenance 97.4 0.29 6.3E-06 57.4 31.7 252 101-356 292-575 (1174)
73 COG1196 Smc Chromosome segrega 97.4 0.2 4.3E-06 62.1 33.0 14 307-320 514-527 (1163)
74 PF13646 HEAT_2: HEAT repeats; 97.4 0.00059 1.3E-08 57.2 7.9 86 474-588 1-87 (88)
75 PF05536 Neurochondrin: Neuroc 97.4 0.0044 9.6E-08 70.0 17.0 189 311-503 7-215 (543)
76 COG1413 FOG: HEAT repeat [Ener 97.4 0.0084 1.8E-07 63.4 18.1 157 347-553 43-211 (335)
77 PF13646 HEAT_2: HEAT repeats; 97.4 0.00037 8.1E-09 58.4 6.3 87 432-547 1-88 (88)
78 PRK02224 chromosome segregatio 97.4 0.16 3.6E-06 60.9 30.6 26 108-133 277-302 (880)
79 KOG0977 Nuclear envelope prote 97.4 0.043 9.2E-07 61.1 23.1 170 56-239 70-260 (546)
80 TIGR02270 conserved hypothetic 97.3 0.013 2.9E-07 63.9 18.8 153 346-550 53-206 (410)
81 COG5369 Uncharacterized conser 97.3 0.0014 3E-08 71.4 10.7 187 367-560 409-603 (743)
82 COG1196 Smc Chromosome segrega 97.3 0.31 6.8E-06 60.4 32.0 28 179-206 806-833 (1163)
83 KOG1789 Endocytosis protein RM 97.2 0.035 7.5E-07 64.8 21.2 258 308-574 1770-2099(2235)
84 KOG2023 Nuclear transport rece 97.2 0.0079 1.7E-07 67.2 15.7 234 306-551 171-463 (885)
85 PTZ00429 beta-adaptin; Provisi 97.2 0.034 7.4E-07 65.0 21.7 177 346-552 31-209 (746)
86 KOG4673 Transcription factor T 97.2 0.13 2.8E-06 57.8 24.5 99 97-195 403-506 (961)
87 TIGR00606 rad50 rad50. This fa 97.2 0.39 8.4E-06 60.3 32.4 40 86-129 823-862 (1311)
88 PF05667 DUF812: Protein of un 97.2 0.24 5.2E-06 56.5 27.7 120 74-194 397-516 (594)
89 PF14664 RICTOR_N: Rapamycin-i 97.2 0.034 7.4E-07 59.9 20.0 238 336-588 14-264 (371)
90 KOG0250 DNA repair protein RAD 97.2 0.52 1.1E-05 56.0 30.4 137 120-275 319-455 (1074)
91 PF00038 Filament: Intermediat 97.1 0.45 9.7E-06 49.9 30.8 193 69-261 45-249 (312)
92 PF07888 CALCOCO1: Calcium bin 97.1 0.3 6.5E-06 54.6 26.6 119 143-261 218-344 (546)
93 COG1413 FOG: HEAT repeat [Ener 97.1 0.015 3.3E-07 61.4 16.2 187 309-549 43-240 (335)
94 PF14664 RICTOR_N: Rapamycin-i 97.1 0.017 3.6E-07 62.4 16.4 184 377-573 14-198 (371)
95 KOG1517 Guanine nucleotide bin 97.1 0.011 2.4E-07 69.0 15.4 210 346-556 511-737 (1387)
96 PRK03918 chromosome segregatio 97.1 1.1 2.5E-05 53.7 33.5 9 491-499 748-756 (880)
97 PF12348 CLASP_N: CLASP N term 97.1 0.019 4.1E-07 57.2 15.4 184 357-551 17-206 (228)
98 KOG0977 Nuclear envelope prote 97.0 0.3 6.5E-06 54.6 25.5 143 14-156 53-215 (546)
99 KOG4674 Uncharacterized conser 97.0 1.5 3.3E-05 55.3 33.4 150 54-211 803-982 (1822)
100 smart00185 ARM Armadillo/beta- 97.0 0.0017 3.7E-08 46.1 5.3 39 462-500 2-40 (41)
101 COG5369 Uncharacterized conser 97.0 0.0054 1.2E-07 67.0 11.1 246 343-590 427-738 (743)
102 KOG2734 Uncharacterized conser 97.0 0.064 1.4E-06 57.7 18.8 238 306-550 122-399 (536)
103 PF10165 Ric8: Guanine nucleot 97.0 0.012 2.6E-07 65.1 14.3 176 409-592 1-217 (446)
104 KOG4413 26S proteasome regulat 97.0 0.13 2.8E-06 53.5 20.4 277 307-589 80-373 (524)
105 PF09759 Atx10homo_assoc: Spin 97.0 0.0025 5.4E-08 55.7 6.9 67 363-429 2-71 (102)
106 KOG1517 Guanine nucleotide bin 96.9 0.011 2.5E-07 68.8 13.8 197 306-503 509-734 (1387)
107 PRK11637 AmiB activator; Provi 96.9 0.5 1.1E-05 52.0 26.4 26 165-190 158-183 (428)
108 KOG2259 Uncharacterized conser 96.9 0.0027 5.8E-08 70.8 8.2 248 314-591 203-473 (823)
109 smart00185 ARM Armadillo/beta- 96.9 0.0021 4.6E-08 45.7 5.1 39 513-551 3-41 (41)
110 TIGR00606 rad50 rad50. This fa 96.9 0.94 2E-05 57.0 31.4 47 110-156 836-882 (1311)
111 PF12128 DUF3584: Protein of u 96.8 1.5 3.2E-05 54.8 32.3 44 168-211 738-781 (1201)
112 KOG4413 26S proteasome regulat 96.8 0.075 1.6E-06 55.2 17.4 189 350-549 85-284 (524)
113 PHA02562 46 endonuclease subun 96.8 0.87 1.9E-05 51.7 28.1 36 237-272 353-388 (562)
114 PF13513 HEAT_EZ: HEAT-like re 96.8 0.0028 6.1E-08 48.6 5.3 55 445-499 1-55 (55)
115 PRK04863 mukB cell division pr 96.7 0.68 1.5E-05 58.3 28.2 105 93-215 439-544 (1486)
116 KOG4593 Mitotic checkpoint pro 96.7 1.6 3.4E-05 49.8 28.1 144 21-164 80-226 (716)
117 PF04063 DUF383: Domain of unk 96.7 0.02 4.2E-07 56.1 11.7 119 445-572 9-153 (192)
118 PF05701 WEMBL: Weak chloropla 96.7 1.7 3.7E-05 49.2 31.9 71 223-293 283-353 (522)
119 PRK03918 chromosome segregatio 96.7 2 4.4E-05 51.6 31.1 7 22-28 174-180 (880)
120 PF00261 Tropomyosin: Tropomyo 96.6 0.56 1.2E-05 47.5 22.2 182 15-208 17-204 (237)
121 KOG4674 Uncharacterized conser 96.6 3 6.5E-05 52.7 31.9 178 16-197 737-929 (1822)
122 PF09759 Atx10homo_assoc: Spin 96.6 0.008 1.7E-07 52.5 7.5 65 488-560 2-68 (102)
123 KOG1242 Protein containing ada 96.6 0.059 1.3E-06 60.1 16.0 217 345-589 211-440 (569)
124 PF12348 CLASP_N: CLASP N term 96.6 0.026 5.5E-07 56.3 12.2 174 400-589 18-202 (228)
125 PF01576 Myosin_tail_1: Myosin 96.6 0.00053 1.1E-08 81.5 0.0 138 63-200 98-235 (859)
126 COG5231 VMA13 Vacuolar H+-ATPa 96.6 0.023 4.9E-07 58.8 11.6 188 355-550 157-427 (432)
127 KOG2023 Nuclear transport rece 96.5 0.024 5.2E-07 63.5 12.2 180 387-577 127-313 (885)
128 PF04063 DUF383: Domain of unk 96.5 0.024 5.3E-07 55.4 10.8 102 402-503 8-134 (192)
129 KOG0999 Microtubule-associated 96.4 2 4.4E-05 47.5 26.1 87 43-133 44-137 (772)
130 PF12128 DUF3584: Protein of u 96.4 3.2 6.9E-05 51.8 31.4 70 203-272 451-520 (1201)
131 KOG0933 Structural maintenance 96.4 3.1 6.8E-05 49.2 28.3 167 222-396 393-574 (1174)
132 PF09726 Macoilin: Transmembra 96.4 0.81 1.8E-05 53.3 24.0 209 64-294 422-660 (697)
133 PF13513 HEAT_EZ: HEAT-like re 96.3 0.0062 1.3E-07 46.7 4.6 55 361-416 1-55 (55)
134 KOG1059 Vesicle coat complex A 96.3 0.056 1.2E-06 61.2 13.5 216 306-551 141-365 (877)
135 KOG1789 Endocytosis protein RM 96.3 0.053 1.2E-06 63.4 13.5 138 363-502 1741-1884(2235)
136 PF08569 Mo25: Mo25-like; Int 96.2 0.23 4.9E-06 52.9 17.3 208 341-554 70-286 (335)
137 PF04849 HAP1_N: HAP1 N-termin 96.1 2.1 4.7E-05 44.6 24.5 139 105-270 162-304 (306)
138 KOG1029 Endocytic adaptor prot 96.1 3.9 8.5E-05 47.1 26.1 69 130-198 422-490 (1118)
139 PRK11637 AmiB activator; Provi 96.0 3.2 6.9E-05 45.7 25.7 7 23-29 46-52 (428)
140 PF11841 DUF3361: Domain of un 96.0 0.21 4.5E-06 47.2 13.9 123 381-503 4-133 (160)
141 KOG0978 E3 ubiquitin ligase in 96.0 4.3 9.4E-05 46.9 27.3 43 114-156 493-535 (698)
142 PF13764 E3_UbLigase_R4: E3 ub 96.0 0.57 1.2E-05 55.2 20.2 247 343-596 113-412 (802)
143 KOG0212 Uncharacterized conser 95.9 0.16 3.5E-06 56.2 14.5 228 306-551 205-444 (675)
144 KOG1242 Protein containing ada 95.9 0.19 4E-06 56.3 15.2 174 360-551 267-444 (569)
145 KOG0212 Uncharacterized conser 95.9 0.035 7.6E-07 61.2 9.2 227 345-585 82-313 (675)
146 PF11841 DUF3361: Domain of un 95.7 0.16 3.4E-06 48.1 11.6 118 341-459 5-130 (160)
147 COG5096 Vesicle coat complex, 95.5 0.44 9.5E-06 55.4 16.8 168 356-552 28-196 (757)
148 KOG3036 Protein involved in ce 95.5 0.65 1.4E-05 46.8 15.5 137 333-470 106-257 (293)
149 PRK09039 hypothetical protein; 95.5 1.6 3.4E-05 46.8 19.9 42 175-216 111-152 (343)
150 KOG1241 Karyopherin (importin) 95.4 0.54 1.2E-05 53.9 16.6 226 348-592 173-438 (859)
151 PF10481 CENP-F_N: Cenp-F N-te 95.3 0.68 1.5E-05 46.9 15.1 159 21-205 22-187 (307)
152 KOG3036 Protein involved in ce 95.3 1.5 3.2E-05 44.3 17.3 178 364-551 95-291 (293)
153 PF08569 Mo25: Mo25-like; Int 95.3 1.6 3.4E-05 46.5 18.9 197 383-589 71-279 (335)
154 KOG1824 TATA-binding protein-i 95.3 0.36 7.8E-06 56.4 14.7 257 313-588 9-281 (1233)
155 PF01576 Myosin_tail_1: Myosin 95.3 0.0048 1E-07 73.4 0.0 160 114-273 205-366 (859)
156 PF11707 Npa1: Ribosome 60S bi 95.3 0.67 1.5E-05 49.3 16.2 202 390-596 58-306 (330)
157 KOG0964 Structural maintenance 95.3 8.9 0.00019 45.5 27.7 32 221-252 418-449 (1200)
158 KOG1240 Protein kinase contain 95.2 1.1 2.3E-05 54.0 18.6 223 311-551 424-725 (1431)
159 KOG0213 Splicing factor 3b, su 95.2 0.29 6.3E-06 55.8 13.5 234 306-553 796-1067(1172)
160 PHA02562 46 endonuclease subun 95.2 6.2 0.00013 44.8 25.0 27 103-129 220-246 (562)
161 PF15070 GOLGA2L5: Putative go 95.2 5.8 0.00013 45.7 24.3 64 189-252 148-233 (617)
162 KOG0018 Structural maintenance 95.2 7.6 0.00016 46.5 25.1 218 51-290 678-897 (1141)
163 COG5181 HSH155 U2 snRNP splice 95.1 0.093 2E-06 58.5 9.1 196 349-553 606-831 (975)
164 KOG1059 Vesicle coat complex A 95.1 0.93 2E-05 51.7 16.9 176 349-551 146-328 (877)
165 KOG0567 HEAT repeat-containing 95.0 0.74 1.6E-05 46.8 14.6 179 341-549 61-278 (289)
166 KOG2611 Neurochondrin/leucine- 94.9 1.8 3.9E-05 47.5 17.8 129 352-482 16-162 (698)
167 PF12717 Cnd1: non-SMC mitotic 94.9 0.2 4.4E-06 48.3 10.1 90 444-552 1-93 (178)
168 PF10165 Ric8: Guanine nucleot 94.9 0.18 3.9E-06 55.8 11.0 114 452-573 2-132 (446)
169 KOG1943 Beta-tubulin folding c 94.7 1.9 4E-05 51.4 18.8 223 347-576 341-595 (1133)
170 PF12755 Vac14_Fab1_bd: Vacuol 94.7 0.23 4.9E-06 43.1 8.8 89 406-499 3-94 (97)
171 PF04078 Rcd1: Cell differenti 94.7 2.9 6.3E-05 42.7 17.9 199 360-561 8-228 (262)
172 PF12755 Vac14_Fab1_bd: Vacuol 94.7 0.27 6E-06 42.6 9.3 64 471-545 26-91 (97)
173 KOG0414 Chromosome condensatio 94.7 0.17 3.8E-06 60.2 10.4 130 432-585 921-1056(1251)
174 PF08324 PUL: PUL domain; Int 94.6 0.68 1.5E-05 47.4 13.9 173 406-586 80-267 (268)
175 COG5240 SEC21 Vesicle coat com 94.6 0.47 1E-05 52.7 12.9 209 348-570 304-576 (898)
176 PF11698 V-ATPase_H_C: V-ATPas 94.6 0.087 1.9E-06 47.3 6.1 71 472-550 43-114 (119)
177 KOG0250 DNA repair protein RAD 94.6 6.3 0.00014 47.3 22.7 122 94-215 328-450 (1074)
178 COG5181 HSH155 U2 snRNP splice 94.4 0.27 5.9E-06 54.9 10.6 147 306-459 601-758 (975)
179 PF11701 UNC45-central: Myosin 94.4 0.13 2.8E-06 48.6 7.3 146 390-549 5-157 (157)
180 KOG1241 Karyopherin (importin) 94.3 1.7 3.7E-05 50.0 16.8 157 348-507 361-536 (859)
181 KOG1943 Beta-tubulin folding c 94.3 1.6 3.4E-05 52.0 16.9 223 308-548 340-608 (1133)
182 KOG1077 Vesicle coat complex A 94.3 1.9 4.1E-05 49.3 16.7 165 390-564 331-501 (938)
183 KOG0971 Microtubule-associated 94.2 15 0.00033 43.3 28.6 22 169-190 420-441 (1243)
184 PF05004 IFRD: Interferon-rela 94.2 3.8 8.2E-05 43.2 18.4 190 349-550 45-256 (309)
185 TIGR03185 DNA_S_dndD DNA sulfu 94.2 14 0.00031 42.9 30.3 43 88-130 247-289 (650)
186 PF08045 CDC14: Cell division 94.2 1.1 2.4E-05 45.8 13.7 94 487-588 106-202 (257)
187 KOG3665 ZYG-1-like serine/thre 94.2 0.6 1.3E-05 54.6 13.4 197 370-592 494-696 (699)
188 KOG0976 Rho/Rac1-interacting s 94.1 14 0.00031 42.8 26.6 29 211-239 369-397 (1265)
189 PF12719 Cnd3: Nuclear condens 94.1 1.6 3.5E-05 45.5 15.5 169 389-576 27-210 (298)
190 KOG0213 Splicing factor 3b, su 94.1 0.17 3.7E-06 57.6 8.3 193 353-552 805-1025(1172)
191 KOG4151 Myosin assembly protei 94.0 0.48 1E-05 54.5 11.9 188 377-578 493-685 (748)
192 KOG4643 Uncharacterized coiled 93.9 18 0.0004 43.1 31.0 73 162-237 379-459 (1195)
193 PF09731 Mitofilin: Mitochondr 93.8 9.2 0.0002 43.9 22.3 51 12-65 246-297 (582)
194 PF10174 Cast: RIM-binding pro 93.8 18 0.0004 42.8 29.4 23 168-190 226-248 (775)
195 COG1579 Zn-ribbon protein, pos 93.8 8.5 0.00018 38.9 19.4 27 107-133 49-75 (239)
196 PF11698 V-ATPase_H_C: V-ATPas 93.8 0.15 3.2E-06 45.8 5.9 71 431-501 44-115 (119)
197 PF05004 IFRD: Interferon-rela 93.7 2.4 5.3E-05 44.6 16.0 151 349-500 88-256 (309)
198 PRK14707 hypothetical protein; 93.7 3.6 7.8E-05 52.4 18.9 282 281-576 138-429 (2710)
199 KOG0976 Rho/Rac1-interacting s 93.7 18 0.00038 42.2 31.7 68 66-133 140-210 (1265)
200 KOG0964 Structural maintenance 93.6 20 0.00044 42.7 29.8 49 224-272 414-462 (1200)
201 PF06160 EzrA: Septation ring 93.6 17 0.00036 41.7 29.7 41 171-211 276-316 (560)
202 KOG1824 TATA-binding protein-i 93.5 1.2 2.5E-05 52.4 13.8 176 351-554 861-1039(1233)
203 PF09730 BicD: Microtubule-ass 93.5 6.9 0.00015 45.7 20.1 66 104-169 266-333 (717)
204 KOG1029 Endocytic adaptor prot 93.5 19 0.00041 41.9 26.6 31 224-254 545-575 (1118)
205 KOG4535 HEAT and armadillo rep 93.5 0.091 2E-06 57.1 4.6 178 405-588 407-598 (728)
206 KOG4673 Transcription factor T 93.3 18 0.0004 41.4 24.0 141 19-205 490-637 (961)
207 PRK09039 hypothetical protein; 93.3 5.4 0.00012 42.7 17.9 68 222-289 117-184 (343)
208 PRK04778 septation ring format 93.3 19 0.00041 41.3 28.4 22 12-33 160-181 (569)
209 PRK14707 hypothetical protein; 93.3 4.2 9E-05 51.8 18.5 264 306-579 202-474 (2710)
210 KOG2611 Neurochondrin/leucine- 93.2 3.8 8.3E-05 45.0 16.3 161 338-503 47-227 (698)
211 PF12717 Cnd1: non-SMC mitotic 93.2 2 4.4E-05 41.2 13.3 91 402-502 1-93 (178)
212 PRK04778 septation ring format 93.2 19 0.00042 41.2 27.0 35 88-122 150-184 (569)
213 KOG1060 Vesicle coat complex A 93.1 1.6 3.4E-05 50.4 13.7 164 354-552 294-459 (968)
214 PF14668 RICTOR_V: Rapamycin-i 93.0 0.31 6.6E-06 40.0 6.1 68 406-473 4-71 (73)
215 PF06025 DUF913: Domain of Unk 93.0 14 0.00031 40.1 20.7 95 389-483 107-207 (379)
216 COG5215 KAP95 Karyopherin (imp 92.9 3.3 7.2E-05 46.4 15.4 217 317-552 185-438 (858)
217 PF07926 TPR_MLP1_2: TPR/MLP1/ 92.9 5.7 0.00012 36.4 15.1 65 68-133 25-89 (132)
218 KOG0971 Microtubule-associated 92.8 25 0.00054 41.6 29.4 118 87-210 315-440 (1243)
219 PF11701 UNC45-central: Myosin 92.7 0.85 1.8E-05 43.1 9.7 147 431-588 4-154 (157)
220 KOG0995 Centromere-associated 92.7 18 0.00038 40.8 20.8 29 222-250 340-368 (581)
221 PF05911 DUF869: Plant protein 92.6 2.3 5E-05 50.0 14.8 124 31-159 592-715 (769)
222 PF08045 CDC14: Cell division 92.6 1.2 2.6E-05 45.5 11.0 96 362-457 106-204 (257)
223 KOG0963 Transcription factor/C 92.6 22 0.00048 40.3 27.2 52 239-291 307-358 (629)
224 PF10174 Cast: RIM-binding pro 92.5 28 0.0006 41.3 31.6 51 106-156 360-410 (775)
225 KOG4643 Uncharacterized coiled 92.5 29 0.00063 41.6 26.7 57 114-173 405-461 (1195)
226 KOG0963 Transcription factor/C 92.5 23 0.0005 40.2 26.7 41 88-128 213-267 (629)
227 KOG0612 Rho-associated, coiled 92.4 33 0.00072 41.9 26.5 98 100-204 671-780 (1317)
228 PF15619 Lebercilin: Ciliary p 92.4 12 0.00026 36.8 20.9 85 46-138 16-103 (194)
229 KOG1062 Vesicle coat complex A 92.4 7.2 0.00016 45.4 17.7 28 349-376 144-171 (866)
230 KOG2259 Uncharacterized conser 92.3 0.65 1.4E-05 52.5 9.3 179 349-553 283-477 (823)
231 PF05384 DegS: Sensor protein 92.3 10 0.00022 36.0 16.1 123 19-157 29-152 (159)
232 PF15066 CAGE1: Cancer-associa 92.2 21 0.00045 39.1 22.4 58 103-161 362-427 (527)
233 PF04078 Rcd1: Cell differenti 92.1 0.88 1.9E-05 46.4 9.3 164 333-499 77-260 (262)
234 PF06371 Drf_GBD: Diaphanous G 91.9 0.39 8.4E-06 46.1 6.5 78 381-459 100-186 (187)
235 PF08324 PUL: PUL domain; Int 91.9 7.2 0.00016 39.8 16.2 135 364-503 80-233 (268)
236 KOG1077 Vesicle coat complex A 91.8 20 0.00044 41.4 20.1 170 359-550 253-432 (938)
237 COG2433 Uncharacterized conser 91.8 1.7 3.7E-05 48.8 11.8 89 99-205 418-506 (652)
238 KOG0414 Chromosome condensatio 91.6 1 2.3E-05 53.9 10.4 140 390-551 921-1064(1251)
239 KOG0612 Rho-associated, coiled 91.5 42 0.0009 41.2 27.3 99 104-205 617-725 (1317)
240 PF14668 RICTOR_V: Rapamycin-i 91.5 0.64 1.4E-05 38.2 6.2 67 364-430 4-70 (73)
241 PF06160 EzrA: Septation ring 91.4 31 0.00067 39.5 26.7 126 12-137 156-298 (560)
242 KOG1061 Vesicle coat complex A 91.4 1.1 2.3E-05 51.6 10.1 208 346-576 85-293 (734)
243 PF08581 Tup_N: Tup N-terminal 91.4 2.3 5E-05 35.5 9.5 72 103-191 4-75 (79)
244 PF06371 Drf_GBD: Diaphanous G 91.3 0.76 1.6E-05 44.1 7.8 78 423-500 100-186 (187)
245 KOG2025 Chromosome condensatio 91.1 6 0.00013 45.4 15.2 113 347-469 85-199 (892)
246 PRK01156 chromosome segregatio 90.9 44 0.00096 40.4 34.6 21 223-243 358-378 (895)
247 PF05918 API5: Apoptosis inhib 90.7 5.1 0.00011 45.4 14.4 119 402-547 35-158 (556)
248 COG1579 Zn-ribbon protein, pos 90.7 20 0.00044 36.2 19.6 16 174-189 67-82 (239)
249 PRK01156 chromosome segregatio 90.7 46 0.001 40.3 32.1 44 224-267 677-720 (895)
250 KOG1061 Vesicle coat complex A 90.7 1 2.2E-05 51.9 8.9 108 306-420 83-191 (734)
251 KOG2025 Chromosome condensatio 90.7 6.9 0.00015 45.0 15.2 116 306-428 82-200 (892)
252 PF10473 CENP-F_leu_zip: Leuci 90.7 14 0.00031 34.3 16.2 97 45-153 6-102 (140)
253 KOG0018 Structural maintenance 90.7 46 0.001 40.2 26.3 51 78-128 296-349 (1141)
254 KOG2999 Regulator of Rac1, req 90.5 8.7 0.00019 43.0 15.4 157 349-505 85-246 (713)
255 KOG2062 26S proteasome regulat 90.5 3.6 7.7E-05 47.4 12.8 97 389-500 555-652 (929)
256 PF02985 HEAT: HEAT repeat; I 90.5 0.52 1.1E-05 31.7 4.1 29 473-501 1-29 (31)
257 KOG2129 Uncharacterized conser 90.4 13 0.00028 40.0 16.1 69 88-158 150-221 (552)
258 COG5231 VMA13 Vacuolar H+-ATPa 90.4 3.4 7.3E-05 43.3 11.5 189 402-591 162-426 (432)
259 PF07814 WAPL: Wings apart-lik 90.1 11 0.00023 40.7 16.0 207 349-563 23-312 (361)
260 KOG2274 Predicted importin 9 [ 90.1 6.5 0.00014 46.3 14.7 196 343-551 567-780 (1005)
261 PF08317 Spc7: Spc7 kinetochor 90.0 16 0.00034 38.8 17.0 17 174-190 252-268 (325)
262 COG5096 Vesicle coat complex, 90.0 8.9 0.00019 44.9 16.0 156 402-585 33-188 (757)
263 KOG4653 Uncharacterized conser 90.0 11 0.00024 44.2 16.4 186 349-552 729-919 (982)
264 KOG0999 Microtubule-associated 90.0 37 0.0008 38.1 24.5 184 97-290 37-256 (772)
265 PF05557 MAD: Mitotic checkpoi 89.9 0.093 2E-06 61.7 0.0 32 106-137 174-205 (722)
266 COG5215 KAP95 Karyopherin (imp 89.9 24 0.00051 39.9 18.1 208 349-576 178-421 (858)
267 KOG1062 Vesicle coat complex A 89.8 32 0.0007 40.3 19.8 83 323-419 85-172 (866)
268 PRK10884 SH3 domain-containing 89.8 2.5 5.4E-05 41.9 9.9 26 107-132 143-168 (206)
269 PF02985 HEAT: HEAT repeat; I 89.6 0.56 1.2E-05 31.5 3.7 28 349-376 2-29 (31)
270 PF13764 E3_UbLigase_R4: E3 ub 89.5 10 0.00022 45.1 16.0 177 384-574 113-330 (802)
271 PF10168 Nup88: Nuclear pore c 89.4 33 0.00072 40.5 20.2 44 88-135 582-625 (717)
272 KOG4535 HEAT and armadillo rep 89.2 0.52 1.1E-05 51.4 4.9 155 347-502 433-604 (728)
273 PF12530 DUF3730: Protein of u 89.0 27 0.00059 35.1 18.3 199 350-577 3-217 (234)
274 PF04849 HAP1_N: HAP1 N-termin 88.8 34 0.00073 35.9 22.3 125 146-273 158-286 (306)
275 KOG0804 Cytoplasmic Zn-finger 88.7 16 0.00034 39.9 15.4 22 71-92 325-346 (493)
276 PRK04863 mukB cell division pr 88.6 84 0.0018 40.3 32.8 30 171-200 440-469 (1486)
277 PF14662 CCDC155: Coiled-coil 88.6 25 0.00055 34.2 21.3 50 108-157 6-55 (193)
278 KOG1060 Vesicle coat complex A 88.6 11 0.00024 43.9 14.9 172 349-551 37-209 (968)
279 PF12718 Tropomyosin_1: Tropom 88.2 22 0.00048 33.1 14.8 11 144-154 79-89 (143)
280 PF15397 DUF4618: Domain of un 88.1 34 0.00073 35.1 22.6 137 102-240 5-157 (258)
281 KOG2274 Predicted importin 9 [ 87.9 14 0.0003 43.7 15.3 217 357-588 460-684 (1005)
282 PF00261 Tropomyosin: Tropomyo 87.9 32 0.0007 34.7 25.4 44 224-267 172-215 (237)
283 PF10168 Nup88: Nuclear pore c 87.7 20 0.00044 42.2 17.1 35 175-209 680-714 (717)
284 PF15070 GOLGA2L5: Putative go 87.7 61 0.0013 37.6 30.2 12 46-57 54-65 (617)
285 PF09730 BicD: Microtubule-ass 87.6 66 0.0014 37.8 21.8 59 232-290 125-183 (717)
286 KOG0804 Cytoplasmic Zn-finger 87.5 16 0.00034 39.9 14.5 23 172-194 427-449 (493)
287 PF09789 DUF2353: Uncharacteri 87.5 42 0.00091 35.5 21.3 109 20-140 2-116 (319)
288 KOG1832 HIV-1 Vpr-binding prot 87.2 3 6.6E-05 48.7 9.5 161 381-561 594-783 (1516)
289 PF09728 Taxilin: Myosin-like 87.0 44 0.00096 35.2 28.9 229 15-292 76-308 (309)
290 PF12460 MMS19_C: RNAPII trans 86.9 26 0.00055 38.5 16.6 187 348-553 190-396 (415)
291 PF06008 Laminin_I: Laminin Do 86.9 39 0.00085 34.6 23.5 77 133-209 144-221 (264)
292 PF12719 Cnd3: Nuclear condens 86.7 10 0.00023 39.5 12.9 169 348-534 27-209 (298)
293 PF05918 API5: Apoptosis inhib 86.7 6.7 0.00014 44.5 11.8 89 443-549 34-123 (556)
294 PF15188 CCDC-167: Coiled-coil 86.4 2.1 4.6E-05 36.1 5.9 63 43-121 6-68 (85)
295 KOG2062 26S proteasome regulat 86.4 3.7 8E-05 47.3 9.6 116 357-489 565-682 (929)
296 smart00787 Spc7 Spc7 kinetocho 86.4 35 0.00077 36.0 16.5 52 68-123 141-192 (312)
297 KOG2999 Regulator of Rac1, req 86.4 17 0.00036 40.8 14.2 175 390-573 85-266 (713)
298 KOG1949 Uncharacterized conser 86.2 25 0.00055 40.6 15.8 183 353-551 180-370 (1005)
299 KOG4360 Uncharacterized coiled 85.9 28 0.0006 38.7 15.5 28 105-132 161-188 (596)
300 KOG1240 Protein kinase contain 85.7 28 0.0006 42.6 16.5 167 359-547 435-642 (1431)
301 PF12031 DUF3518: Domain of un 85.7 2.1 4.5E-05 43.1 6.5 83 404-486 139-230 (257)
302 KOG0243 Kinesin-like protein [ 85.4 98 0.0021 37.7 24.5 105 88-192 458-565 (1041)
303 TIGR03007 pepcterm_ChnLen poly 85.3 68 0.0015 35.9 23.5 85 102-193 203-295 (498)
304 KOG1832 HIV-1 Vpr-binding prot 85.1 3.5 7.7E-05 48.2 8.7 170 340-529 594-797 (1516)
305 PF15619 Lebercilin: Ciliary p 85.0 41 0.00089 33.0 20.9 84 107-190 23-113 (194)
306 KOG0567 HEAT repeat-containing 85.0 31 0.00068 35.4 14.4 82 474-585 189-272 (289)
307 KOG1058 Vesicle coat complex C 84.8 39 0.00086 39.4 16.6 60 400-460 271-346 (948)
308 PF04111 APG6: Autophagy prote 84.6 9.9 0.00021 40.2 11.4 27 103-129 43-69 (314)
309 PF08826 DMPK_coil: DMPK coile 84.4 9.1 0.0002 30.3 8.3 52 75-134 5-56 (61)
310 KOG1853 LIS1-interacting prote 84.4 50 0.0011 33.5 18.3 52 103-157 52-103 (333)
311 KOG1078 Vesicle coat complex C 84.1 24 0.00053 41.1 14.6 54 484-550 478-531 (865)
312 KOG1103 Predicted coiled-coil 84.0 61 0.0013 34.3 19.1 91 87-205 141-231 (561)
313 PF08702 Fib_alpha: Fibrinogen 83.9 38 0.00082 31.7 13.9 102 34-139 28-133 (146)
314 KOG2032 Uncharacterized conser 83.8 11 0.00024 41.7 11.4 146 386-541 252-406 (533)
315 COG4942 Membrane-bound metallo 83.5 75 0.0016 34.9 27.7 50 49-99 38-87 (420)
316 PF06008 Laminin_I: Laminin Do 83.1 58 0.0013 33.3 25.1 68 194-261 146-214 (264)
317 PF12460 MMS19_C: RNAPII trans 82.8 64 0.0014 35.3 17.4 188 389-589 190-390 (415)
318 KOG2137 Protein kinase [Signal 82.5 13 0.00029 42.8 11.9 137 389-540 390-526 (700)
319 PF08614 ATG16: Autophagy prot 82.5 8.7 0.00019 37.5 9.4 34 96-129 17-50 (194)
320 PF06705 SF-assemblin: SF-asse 82.4 59 0.0013 32.9 22.2 39 178-216 202-241 (247)
321 PRK11281 hypothetical protein; 82.4 1.4E+02 0.003 37.2 27.2 38 107-144 224-261 (1113)
322 KOG0995 Centromere-associated 82.3 95 0.0021 35.2 28.9 20 113-132 374-393 (581)
323 KOG1820 Microtubule-associated 82.0 43 0.00093 40.0 16.2 180 354-549 260-441 (815)
324 PRK11281 hypothetical protein; 82.0 1.4E+02 0.0031 37.0 25.6 88 45-136 83-182 (1113)
325 TIGR01843 type_I_hlyD type I s 81.9 80 0.0017 34.1 21.4 75 174-248 152-230 (423)
326 COG5116 RPN2 26S proteasome re 81.9 4.5 9.8E-05 45.3 7.6 96 431-549 552-648 (926)
327 PF01347 Vitellogenin_N: Lipop 81.8 22 0.00047 41.0 13.9 171 390-594 397-591 (618)
328 PF01347 Vitellogenin_N: Lipop 81.5 14 0.00031 42.5 12.2 198 349-588 397-617 (618)
329 TIGR01005 eps_transp_fam exopo 81.4 37 0.0008 40.3 15.9 169 102-297 186-372 (754)
330 KOG1248 Uncharacterized conser 81.4 72 0.0016 39.1 17.7 192 357-561 707-910 (1176)
331 PF09731 Mitofilin: Mitochondr 81.4 1.1E+02 0.0023 35.2 20.0 19 88-106 314-332 (582)
332 PF10481 CENP-F_N: Cenp-F N-te 81.3 69 0.0015 32.9 15.5 37 105-141 20-56 (307)
333 PF08167 RIX1: rRNA processing 81.2 10 0.00022 36.1 9.1 107 349-459 27-142 (165)
334 KOG0211 Protein phosphatase 2A 81.0 33 0.00071 40.6 14.7 179 349-549 481-662 (759)
335 KOG2956 CLIP-associating prote 80.7 90 0.0019 34.7 16.7 172 360-550 300-476 (516)
336 KOG0994 Extracellular matrix g 80.4 1.5E+02 0.0034 36.4 22.5 24 198-221 1536-1559(1758)
337 KOG0163 Myosin class VI heavy 80.4 33 0.00072 39.9 13.8 78 15-106 905-982 (1259)
338 COG5209 RCD1 Uncharacterized p 80.2 22 0.00047 35.7 11.0 133 367-500 120-267 (315)
339 PF07814 WAPL: Wings apart-lik 80.2 18 0.00039 39.0 11.6 93 390-482 23-116 (361)
340 PF13851 GAS: Growth-arrest sp 80.1 64 0.0014 31.8 20.8 38 153-190 133-171 (201)
341 PF06025 DUF913: Domain of Unk 80.0 95 0.0021 33.7 19.1 156 408-573 79-254 (379)
342 KOG0915 Uncharacterized conser 79.6 25 0.00054 43.9 13.3 154 348-505 1131-1310(1702)
343 KOG1566 Conserved protein Mo25 79.5 88 0.0019 33.0 16.6 208 341-554 73-289 (342)
344 TIGR01069 mutS2 MutS2 family p 79.4 28 0.0006 41.5 13.8 47 17-63 504-550 (771)
345 KOG4657 Uncharacterized conser 79.4 71 0.0015 31.9 15.2 108 27-138 18-128 (246)
346 KOG4653 Uncharacterized conser 79.0 17 0.00037 42.8 11.3 174 400-592 738-917 (982)
347 PF04111 APG6: Autophagy prote 79.0 29 0.00063 36.7 12.5 19 45-63 60-78 (314)
348 PF04156 IncA: IncA protein; 79.0 58 0.0013 31.4 13.9 30 99-128 126-155 (191)
349 PF05701 WEMBL: Weak chloropla 79.0 1.2E+02 0.0026 34.4 32.4 55 68-126 180-234 (522)
350 PF13251 DUF4042: Domain of un 78.9 15 0.00033 35.6 9.6 137 363-502 2-175 (182)
351 PF05483 SCP-1: Synaptonemal c 78.9 1.3E+02 0.0029 34.8 32.2 263 17-290 78-383 (786)
352 PF05622 HOOK: HOOK protein; 78.7 0.65 1.4E-05 54.6 0.0 97 107-211 264-373 (713)
353 PF09403 FadA: Adhesion protei 78.6 53 0.0011 30.0 12.4 59 16-83 26-85 (126)
354 PF05557 MAD: Mitotic checkpoi 78.6 0.66 1.4E-05 54.7 0.0 32 174-205 186-217 (722)
355 PF12325 TMF_TATA_bd: TATA ele 78.6 51 0.0011 29.8 13.6 25 219-243 94-118 (120)
356 KOG1058 Vesicle coat complex C 78.6 25 0.00054 41.0 12.2 134 349-501 136-272 (948)
357 PF08647 BRE1: BRE1 E3 ubiquit 78.4 29 0.00063 29.9 10.2 89 93-185 4-92 (96)
358 PF07111 HCR: Alpha helical co 78.2 1.4E+02 0.0031 34.7 25.2 85 19-112 75-160 (739)
359 smart00787 Spc7 Spc7 kinetocho 78.2 76 0.0017 33.5 15.2 49 106-154 214-262 (312)
360 smart00638 LPD_N Lipoprotein N 78.0 88 0.0019 35.7 17.1 124 444-594 410-547 (574)
361 KOG0915 Uncharacterized conser 77.8 48 0.001 41.6 14.9 174 390-573 1000-1182(1702)
362 KOG0211 Protein phosphatase 2A 77.6 53 0.0011 38.9 15.0 181 351-551 441-625 (759)
363 PF09789 DUF2353: Uncharacteri 77.6 1E+02 0.0022 32.7 18.1 91 60-154 79-177 (319)
364 KOG2956 CLIP-associating prote 77.4 50 0.0011 36.5 13.6 142 350-501 332-477 (516)
365 PF12031 DUF3518: Domain of un 77.1 6.3 0.00014 39.8 6.4 85 446-537 139-231 (257)
366 KOG1248 Uncharacterized conser 76.9 1.9E+02 0.0042 35.6 19.3 211 357-588 664-893 (1176)
367 COG5098 Chromosome condensatio 76.6 9.8 0.00021 43.7 8.3 128 401-551 908-1037(1128)
368 TIGR01000 bacteriocin_acc bact 76.4 1.3E+02 0.0028 33.4 17.7 13 120-132 239-251 (457)
369 TIGR03185 DNA_S_dndD DNA sulfu 76.3 1.6E+02 0.0035 34.3 29.3 15 197-211 401-415 (650)
370 KOG4464 Signaling protein RIC- 75.9 59 0.0013 35.5 13.4 155 392-554 49-234 (532)
371 COG4477 EzrA Negative regulato 75.9 1.4E+02 0.0031 33.6 23.5 28 212-239 345-372 (570)
372 KOG1991 Nuclear transport rece 75.8 1.7E+02 0.0037 35.3 18.3 198 344-551 459-671 (1010)
373 KOG2032 Uncharacterized conser 75.8 21 0.00046 39.5 10.4 150 346-500 253-414 (533)
374 COG0419 SbcC ATPase involved i 75.8 2E+02 0.0043 35.1 30.3 12 18-29 204-215 (908)
375 PF14389 Lzipper-MIP1: Leucine 75.8 14 0.00029 31.5 7.2 69 64-136 12-87 (88)
376 COG5209 RCD1 Uncharacterized p 75.8 13 0.00027 37.3 7.9 135 333-469 127-277 (315)
377 KOG1937 Uncharacterized conser 75.7 1.3E+02 0.0029 33.1 25.4 30 222-251 456-485 (521)
378 PF14992 TMCO5: TMCO5 family 75.6 75 0.0016 32.9 13.8 95 16-137 3-97 (280)
379 PF09744 Jnk-SapK_ap_N: JNK_SA 75.6 73 0.0016 30.2 12.8 59 66-128 56-114 (158)
380 COG5240 SEC21 Vesicle coat com 75.3 74 0.0016 36.2 14.4 187 350-551 267-460 (898)
381 PF10363 DUF2435: Protein of u 75.3 9.6 0.00021 32.7 6.3 68 434-503 7-74 (92)
382 PF14662 CCDC155: Coiled-coil 75.2 85 0.0019 30.7 23.8 74 57-131 33-109 (193)
383 KOG1967 DNA repair/transcripti 75.2 19 0.00042 42.7 10.4 146 430-587 867-1018(1030)
384 PF14988 DUF4515: Domain of un 75.0 91 0.002 30.9 23.8 68 47-132 9-76 (206)
385 KOG1020 Sister chromatid cohes 74.8 36 0.00077 42.6 12.8 106 432-554 818-924 (1692)
386 PF05700 BCAS2: Breast carcino 74.8 20 0.00043 35.9 9.4 74 66-139 138-211 (221)
387 PF13851 GAS: Growth-arrest sp 74.6 92 0.002 30.7 16.0 91 162-255 23-120 (201)
388 KOG1020 Sister chromatid cohes 74.5 1.2E+02 0.0026 38.4 16.9 138 349-503 818-962 (1692)
389 KOG1853 LIS1-interacting prote 74.3 1E+02 0.0023 31.2 14.2 37 43-83 53-89 (333)
390 KOG1967 DNA repair/transcripti 73.9 10 0.00022 44.9 7.7 146 306-454 864-1018(1030)
391 COG5116 RPN2 26S proteasome re 73.6 22 0.00048 40.1 9.9 101 388-502 551-651 (926)
392 PF14915 CCDC144C: CCDC144C pr 73.6 1.2E+02 0.0026 31.6 20.8 172 76-292 4-194 (305)
393 KOG1991 Nuclear transport rece 73.5 1.8E+02 0.0039 35.2 17.7 122 360-485 431-560 (1010)
394 PF10234 Cluap1: Clusterin-ass 73.5 1E+02 0.0022 31.8 14.2 36 17-54 135-170 (267)
395 PRK10884 SH3 domain-containing 73.4 40 0.00086 33.5 10.9 33 103-135 125-157 (206)
396 PRK00409 recombination and DNA 73.3 50 0.0011 39.5 13.7 41 23-63 515-555 (782)
397 TIGR03007 pepcterm_ChnLen poly 72.9 1.6E+02 0.0035 32.8 20.9 34 224-257 313-346 (498)
398 KOG4593 Mitotic checkpoint pro 72.9 1.9E+02 0.0042 33.6 27.5 73 171-243 184-259 (716)
399 KOG0301 Phospholipase A2-activ 72.8 1.3E+02 0.0028 34.9 15.7 174 402-588 557-742 (745)
400 COG5185 HEC1 Protein involved 72.8 1.6E+02 0.0035 32.7 23.5 138 102-250 294-432 (622)
401 PF06120 Phage_HK97_TLTM: Tail 72.6 95 0.0021 32.6 14.0 116 96-213 48-167 (301)
402 PF12325 TMF_TATA_bd: TATA ele 72.1 76 0.0017 28.7 11.9 37 15-51 21-57 (120)
403 PF14073 Cep57_CLD: Centrosome 72.0 98 0.0021 29.9 17.3 158 105-290 6-168 (178)
404 KOG2933 Uncharacterized conser 71.9 19 0.00041 37.7 8.5 103 431-550 130-233 (334)
405 smart00638 LPD_N Lipoprotein N 71.2 99 0.0022 35.3 15.3 133 390-549 395-543 (574)
406 PF10212 TTKRSYEDQ: Predicted 71.1 68 0.0015 36.0 13.0 103 95-207 412-514 (518)
407 PRK10929 putative mechanosensi 70.4 2.8E+02 0.0061 34.5 26.4 45 146-190 188-232 (1109)
408 PF14666 RICTOR_M: Rapamycin-i 70.2 1.2E+02 0.0027 30.4 13.8 130 403-551 78-225 (226)
409 COG4026 Uncharacterized protei 70.2 29 0.00063 34.5 8.8 86 57-154 129-214 (290)
410 COG5218 YCG1 Chromosome conden 69.7 83 0.0018 35.9 13.2 106 472-590 91-196 (885)
411 PF10146 zf-C4H2: Zinc finger- 69.5 1E+02 0.0022 31.2 12.9 37 96-132 32-68 (230)
412 PF02183 HALZ: Homeobox associ 69.3 17 0.00037 26.9 5.5 31 104-134 13-43 (45)
413 KOG1899 LAR transmembrane tyro 69.2 1.2E+02 0.0026 34.8 14.3 159 22-205 172-333 (861)
414 PRK12704 phosphodiesterase; Pr 69.1 2.1E+02 0.0046 32.5 16.9 6 25-30 39-44 (520)
415 COG4942 Membrane-bound metallo 68.9 1.9E+02 0.004 31.9 29.1 44 51-95 54-97 (420)
416 KOG1788 Uncharacterized conser 68.9 1.5E+02 0.0032 36.3 15.4 233 335-573 672-960 (2799)
417 TIGR01843 type_I_hlyD type I s 68.8 1.7E+02 0.0038 31.4 20.5 17 20-36 84-100 (423)
418 PF00769 ERM: Ezrin/radixin/mo 68.7 1.3E+02 0.0028 30.6 13.8 104 21-129 9-115 (246)
419 PF05622 HOOK: HOOK protein; 67.8 1.7 3.7E-05 51.1 0.0 185 103-294 193-401 (713)
420 KOG2933 Uncharacterized conser 67.8 40 0.00087 35.4 9.8 139 349-500 90-233 (334)
421 KOG3665 ZYG-1-like serine/thre 67.5 56 0.0012 38.5 12.3 185 335-545 501-691 (699)
422 PF13251 DUF4042: Domain of un 66.7 52 0.0011 32.0 9.9 110 431-551 40-174 (182)
423 KOG4809 Rab6 GTPase-interactin 66.6 2.3E+02 0.005 32.1 24.4 170 16-197 253-434 (654)
424 PF06637 PV-1: PV-1 protein (P 66.5 1.3E+02 0.0027 32.5 13.2 97 16-142 284-381 (442)
425 PF04156 IncA: IncA protein; 66.4 1.3E+02 0.0027 29.0 13.8 12 105-116 139-150 (191)
426 PRK10780 periplasmic chaperone 66.4 74 0.0016 30.1 10.9 39 3-41 28-67 (165)
427 PF12530 DUF3730: Protein of u 66.4 1.5E+02 0.0032 29.8 17.5 137 390-551 2-151 (234)
428 PF05911 DUF869: Plant protein 65.9 2.9E+02 0.0063 33.0 27.6 47 88-134 119-165 (769)
429 PF11864 DUF3384: Domain of un 65.8 1.4E+02 0.003 33.3 14.6 91 447-550 231-329 (464)
430 PRK06569 F0F1 ATP synthase sub 65.4 1.3E+02 0.0027 28.6 12.6 45 68-112 59-104 (155)
431 PF11865 DUF3385: Domain of un 65.4 50 0.0011 31.2 9.5 144 349-500 12-156 (160)
432 KOG0249 LAR-interacting protei 65.4 2.8E+02 0.006 32.5 17.4 51 45-95 59-115 (916)
433 PF08167 RIX1: rRNA processing 65.3 90 0.002 29.6 11.3 112 390-505 27-147 (165)
434 PF10498 IFT57: Intra-flagella 64.9 1.3E+02 0.0028 32.5 13.5 80 167-252 232-311 (359)
435 PF07798 DUF1640: Protein of u 64.3 1.4E+02 0.003 28.7 14.3 18 66-83 86-103 (177)
436 PF06705 SF-assemblin: SF-asse 64.0 1.7E+02 0.0037 29.6 30.5 31 174-204 122-152 (247)
437 KOG0962 DNA repair protein RAD 63.8 3.9E+02 0.0084 33.7 30.6 130 4-138 722-868 (1294)
438 PF08614 ATG16: Autophagy prot 63.5 47 0.001 32.4 9.2 84 31-122 91-177 (194)
439 COG5098 Chromosome condensatio 63.4 73 0.0016 37.0 11.4 130 359-503 908-1039(1128)
440 PF13094 CENP-Q: CENP-Q, a CEN 63.1 22 0.00048 33.5 6.6 55 9-63 16-80 (160)
441 KOG2137 Protein kinase [Signal 63.0 67 0.0015 37.3 11.3 171 306-485 346-521 (700)
442 KOG1078 Vesicle coat complex C 62.8 2.2E+02 0.0048 33.6 15.3 61 354-419 252-312 (865)
443 PF09304 Cortex-I_coil: Cortex 62.5 1.1E+02 0.0024 27.0 13.7 65 176-260 12-76 (107)
444 COG0419 SbcC ATPase involved i 62.5 3.6E+02 0.0078 32.9 31.8 25 111-135 418-442 (908)
445 PF12718 Tropomyosin_1: Tropom 62.4 1.3E+02 0.0029 27.9 15.7 25 110-134 73-97 (143)
446 PF08216 CTNNBL: Catenin-beta- 62.3 8.5 0.00018 34.0 3.3 43 448-490 63-105 (108)
447 PF10211 Ax_dynein_light: Axon 61.7 1.6E+02 0.0035 28.7 12.4 37 100-136 124-160 (189)
448 PRK09169 hypothetical protein; 61.0 3.1E+02 0.0066 36.6 17.3 132 348-482 164-300 (2316)
449 COG2433 Uncharacterized conser 60.8 91 0.002 35.6 11.5 46 49-102 422-467 (652)
450 PF10146 zf-C4H2: Zinc finger- 60.7 1.9E+02 0.0042 29.2 13.6 39 49-95 32-70 (230)
451 PF09787 Golgin_A5: Golgin sub 60.6 2.9E+02 0.0064 31.2 22.3 21 174-194 314-334 (511)
452 PF07926 TPR_MLP1_2: TPR/MLP1/ 60.3 1.4E+02 0.0029 27.3 14.0 70 174-249 18-87 (132)
453 COG5218 YCG1 Chromosome conden 60.0 3.2E+02 0.007 31.5 22.9 115 346-468 90-204 (885)
454 PF14225 MOR2-PAG1_C: Cell mor 59.3 2.2E+02 0.0047 29.3 16.0 181 347-553 63-259 (262)
455 PF14726 RTTN_N: Rotatin, an a 58.9 1E+02 0.0022 26.9 9.3 68 470-546 28-95 (98)
456 KOG1899 LAR transmembrane tyro 58.6 3.4E+02 0.0074 31.3 18.5 112 24-158 125-237 (861)
457 PF12231 Rif1_N: Rap1-interact 58.0 88 0.0019 33.8 11.0 175 358-549 4-202 (372)
458 smart00338 BRLZ basic region l 58.0 35 0.00077 26.9 6.0 35 103-137 26-60 (65)
459 PF08317 Spc7: Spc7 kinetochor 57.9 2.5E+02 0.0055 29.7 24.1 17 195-211 185-201 (325)
460 PF00170 bZIP_1: bZIP transcri 57.9 79 0.0017 24.8 7.9 30 104-133 27-56 (64)
461 KOG0301 Phospholipase A2-activ 57.5 97 0.0021 35.8 11.2 128 350-482 592-726 (745)
462 PF15369 KIAA1328: Uncharacter 57.5 56 0.0012 34.4 8.7 49 173-221 33-81 (328)
463 PF07716 bZIP_2: Basic region 57.0 38 0.00082 25.8 5.7 29 103-131 25-53 (54)
464 PF05667 DUF812: Protein of un 56.9 3.7E+02 0.0079 31.2 28.0 96 97-192 402-503 (594)
465 KOG0978 E3 ubiquitin ligase in 56.7 3.9E+02 0.0085 31.4 29.5 40 141-180 426-465 (698)
466 PRK10929 putative mechanosensi 56.3 5E+02 0.011 32.5 30.3 98 108-205 206-311 (1109)
467 PRK09169 hypothetical protein; 56.0 5.6E+02 0.012 34.3 18.4 108 306-415 160-274 (2316)
468 PF05010 TACC: Transforming ac 56.0 2.2E+02 0.0047 28.3 25.1 200 46-265 6-205 (207)
469 PF09755 DUF2046: Uncharacteri 55.9 2.7E+02 0.0059 29.4 28.4 26 254-279 259-284 (310)
470 COG1340 Uncharacterized archae 55.7 2.7E+02 0.0058 29.2 28.9 32 103-134 69-100 (294)
471 TIGR03017 EpsF chain length de 55.3 3.2E+02 0.0068 29.9 23.4 61 41-101 140-201 (444)
472 KOG4464 Signaling protein RIC- 55.3 83 0.0018 34.4 9.7 134 433-574 48-198 (532)
473 PF11559 ADIP: Afadin- and alp 55.2 1.8E+02 0.0038 27.0 13.3 15 25-39 60-74 (151)
474 PF07989 Microtub_assoc: Micro 54.9 85 0.0018 25.9 7.8 34 105-138 2-35 (75)
475 PF05529 Bap31: B-cell recepto 54.8 55 0.0012 31.8 8.0 40 59-102 153-192 (192)
476 PF10363 DUF2435: Protein of u 54.8 31 0.00068 29.5 5.5 69 349-419 5-73 (92)
477 cd03569 VHS_Hrs_Vps27p VHS dom 54.3 44 0.00095 31.0 6.8 72 348-419 42-115 (142)
478 cd03568 VHS_STAM VHS domain fa 53.8 69 0.0015 29.8 8.1 73 472-551 37-110 (144)
479 PF03980 Nnf1: Nnf1 ; InterPr 53.6 93 0.002 27.2 8.5 30 102-131 79-108 (109)
480 KOG0992 Uncharacterized conser 53.3 3.7E+02 0.0081 30.2 28.4 168 11-211 142-332 (613)
481 KOG4438 Centromere-associated 53.2 3.5E+02 0.0075 29.8 30.1 28 3-30 119-148 (446)
482 PF14726 RTTN_N: Rotatin, an a 53.0 84 0.0018 27.3 7.9 64 386-451 28-91 (98)
483 PF10212 TTKRSYEDQ: Predicted 52.7 3.9E+02 0.0085 30.2 19.0 90 175-273 415-504 (518)
484 COG3883 Uncharacterized protei 52.1 2.9E+02 0.0062 28.5 21.0 48 82-133 42-89 (265)
485 PF11932 DUF3450: Protein of u 52.1 2.5E+02 0.0055 28.4 12.7 26 107-132 60-85 (251)
486 PF04012 PspA_IM30: PspA/IM30 52.1 2.5E+02 0.0053 27.7 17.8 178 47-271 28-218 (221)
487 PF00769 ERM: Ezrin/radixin/mo 52.0 2.7E+02 0.0059 28.3 14.6 52 99-150 57-108 (246)
488 PF05483 SCP-1: Synaptonemal c 51.6 4.6E+02 0.0099 30.7 30.2 53 153-205 328-381 (786)
489 PF00170 bZIP_1: bZIP transcri 51.4 56 0.0012 25.7 6.1 52 50-133 12-63 (64)
490 PF05266 DUF724: Protein of un 51.3 1.6E+02 0.0034 28.8 10.4 31 103-133 110-140 (190)
491 KOG4360 Uncharacterized coiled 51.1 2.7E+02 0.006 31.2 13.0 91 10-112 205-295 (596)
492 cd03561 VHS VHS domain family; 51.1 67 0.0014 29.2 7.4 72 348-419 38-113 (133)
493 cd07593 BAR_MUG137_fungi The B 50.4 2.7E+02 0.0059 27.8 13.4 81 51-138 80-163 (215)
494 cd03568 VHS_STAM VHS domain fa 50.4 55 0.0012 30.5 6.8 72 348-419 38-111 (144)
495 TIGR01069 mutS2 MutS2 family p 50.3 2.7E+02 0.0059 33.3 14.1 10 45-54 511-520 (771)
496 KOG0239 Kinesin (KAR3 subfamil 50.2 4.1E+02 0.0089 31.2 15.2 20 274-293 297-316 (670)
497 PF13514 AAA_27: AAA domain 49.8 6.1E+02 0.013 31.7 28.7 260 14-291 653-931 (1111)
498 PF05781 MRVI1: MRVI1 protein; 49.5 3.2E+02 0.007 31.0 13.5 120 39-210 203-322 (538)
499 PF05010 TACC: Transforming ac 49.4 2.8E+02 0.006 27.6 23.3 183 83-288 3-186 (207)
500 PF04821 TIMELESS: Timeless pr 49.3 1E+02 0.0022 31.7 9.2 144 347-502 13-209 (266)
No 1
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=5.9e-24 Score=228.99 Aligned_cols=279 Identities=17% Similarity=0.205 Sum_probs=234.4
Q ss_pred cccCchHHHhcccCCC-CccccchHHHH---h-hcCchhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhC-Ccc
Q 007520 306 YTKDYISKGSSRFGAP-MSLQKSNPSRE---L-SGQRATIAKICDEVGLPKILQLLTSEDPDVQIHAVKVVANLAA-EDI 379 (600)
Q Consensus 306 ~~~g~i~~Lv~~L~s~-~~~~r~~a~~~---L-~~~~~~~~~i~e~GgV~~Lv~LL~s~~~~vr~~Aa~aL~nLa~-~~~ 379 (600)
...|.+|.+|.++... .+..+..|+++ + +++......+++.|++|.++.++.+++..+++.|+|+|+|++. .+.
T Consensus 106 i~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~ 185 (514)
T KOG0166|consen 106 IQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPD 185 (514)
T ss_pred HHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChH
Confidence 5569999999999755 56667777766 3 3466677788999999999999999999999999999999999 566
Q ss_pred hHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcCCccHHHHHH-hCchhhhHhhhccCCCHHHHHHHHHHHHHH
Q 007520 380 NQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMNEMNQGLIMS-RGGGQLLAKTASKTDDPQTLRMVAGALANL 458 (600)
Q Consensus 380 ~~~~iv~~G~I~~Lv~lL~~~~~~~v~~~Al~aL~NLa~~~~~r~~I~~-~G~I~~Lv~lL~~~~~~~v~~~Aa~aL~nL 458 (600)
.|..++.+|++++|+.++.......+.+.+.|+|.|||.+..-...+.. ..++|.|..++. +.|+.+...|||+|++|
T Consensus 186 ~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~-~~D~~Vl~Da~WAlsyL 264 (514)
T KOG0166|consen 186 CRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLH-STDEEVLTDACWALSYL 264 (514)
T ss_pred HHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHH
Confidence 6888999999999999998655557889999999999998432222222 447899999994 58999999999999999
Q ss_pred h-CCchhHHHHHHcChHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchhhhhcchhhHHHHHhCCcHHHHHHhhc-CCCH
Q 007520 459 C-GNEKLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSK-TNSA 536 (600)
Q Consensus 459 a-~~~e~r~~i~~~G~i~~Lv~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~q~~~~~r~~l~e~g~l~~Lv~Ll~-s~~~ 536 (600)
+ +.++....+++.|+++.|+.+|.+.++.++..|+++++|++.++ ...-..+++.|++|.|..++. ++..
T Consensus 265 sdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~--------d~QTq~vi~~~~L~~l~~ll~~s~~~ 336 (514)
T KOG0166|consen 265 TDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGS--------DEQTQVVINSGALPVLSNLLSSSPKE 336 (514)
T ss_pred hcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeecc--------HHHHHHHHhcChHHHHHHHhccCcch
Confidence 9 55677788899999999999999999999999999999998765 345567889999999999988 5667
Q ss_pred HHHHHHHHHHHHhhc-CchhHHHHHHcccHHHHHHhhhcCChHHHHHHHHHHHhcCcc
Q 007520 537 STRRHVELALCHLAQ-NEDNARDFISRGGAKELVQISIESSREDIRNLAKKTMKSNPR 593 (600)
Q Consensus 537 ~v~~~Aa~aL~nLa~-~~~~~~~lv~~G~l~~Lv~ll~~~~~~~ir~~A~~~L~~~p~ 593 (600)
.++..|||++.|++. +.+..+.++++|.+|.|++++..+.-.--+++||.+.+....
T Consensus 337 ~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~ 394 (514)
T KOG0166|consen 337 SIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSS 394 (514)
T ss_pred hHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhccc
Confidence 799999999999966 556889999999999999999988865677777776655443
No 2
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=7.8e-25 Score=222.08 Aligned_cols=274 Identities=19% Similarity=0.236 Sum_probs=240.9
Q ss_pred cccCchHHHhcccCCCCccccchH---HHHhhcCchhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCcchHH
Q 007520 306 YTKDYISKGSSRFGAPMSLQKSNP---SRELSGQRATIAKICDEVGLPKILQLLTSEDPDVQIHAVKVVANLAAEDINQE 382 (600)
Q Consensus 306 ~~~g~i~~Lv~~L~s~~~~~r~~a---~~~L~~~~~~~~~i~e~GgV~~Lv~LL~s~~~~vr~~Aa~aL~nLa~~~~~~~ 382 (600)
+......+....+.+..+.....+ +++++.+.+++.-|+..+|+.+|+.-+.++..++|..+++|++||+..+.++.
T Consensus 82 Vsres~epvl~llqs~d~~Iq~aa~~alGnlAVn~enk~liv~l~Gl~~Li~qmmtd~vevqcnaVgCitnLaT~d~nk~ 161 (550)
T KOG4224|consen 82 VSRESNEPVLALLQSCDKCIQCAAGEALGNLAVNMENKGLIVSLLGLDLLILQMMTDGVEVQCNAVGCITNLATFDSNKV 161 (550)
T ss_pred hhhhhhhHHHHHHhCcchhhhhhhhhhhccceeccCCceEEEeccChHHHHHHhcCCCcEEEeeehhhhhhhhccccchh
Confidence 444445555555555543332222 22366788888889999999999977778888999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcCCccHHHHHHhCchhhhHhhhccCCCHHHHHHHHHHHHHHhCCc
Q 007520 383 KIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMNEMNQGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLCGNE 462 (600)
Q Consensus 383 ~iv~~G~I~~Lv~lL~~~~~~~v~~~Al~aL~NLa~~~~~r~~I~~~G~I~~Lv~lL~~~~~~~v~~~Aa~aL~nLa~~~ 462 (600)
.|...|++.+|..+- .+.+..+++.+.++|.|++...++|+.++..|++|.|+.++. +.+++++..++.+|.|++.+.
T Consensus 162 kiA~sGaL~pltrLa-kskdirvqrnatgaLlnmThs~EnRr~LV~aG~lpvLVsll~-s~d~dvqyycttaisnIaVd~ 239 (550)
T KOG4224|consen 162 KIARSGALEPLTRLA-KSKDIRVQRNATGALLNMTHSRENRRVLVHAGGLPVLVSLLK-SGDLDVQYYCTTAISNIAVDR 239 (550)
T ss_pred hhhhccchhhhHhhc-ccchhhHHHHHHHHHHHhhhhhhhhhhhhccCCchhhhhhhc-cCChhHHHHHHHHhhhhhhhH
Confidence 999999999999954 488889999999999999999999999999999999999995 588999999999999999999
Q ss_pred hhHHHHHHcC--hHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchhhhhcchhhHHHHHhCCcHHHHHHhhcCCCHHHHH
Q 007520 463 KLHTMLEEDG--AIKALLAMVRSGNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSKTNSASTRR 540 (600)
Q Consensus 463 e~r~~i~~~G--~i~~Lv~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~q~~~~~r~~l~e~g~l~~Lv~Ll~s~~~~v~~ 540 (600)
..|..+++.| .++.|+.+++++++.++..|.-+|+||+++ ..++..+++.|++|.++.+++++.-+...
T Consensus 240 ~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasd---------t~Yq~eiv~ag~lP~lv~Llqs~~~plil 310 (550)
T KOG4224|consen 240 RARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASD---------TEYQREIVEAGSLPLLVELLQSPMGPLIL 310 (550)
T ss_pred HHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhccc---------chhhhHHHhcCCchHHHHHHhCcchhHHH
Confidence 9999999988 999999999999999999999999999976 45777899999999999999999888889
Q ss_pred HHHHHHHHhhcCchhHHHHHHcccHHHHHHhhhcCChHHHHHHHHHHHhc
Q 007520 541 HVELALCHLAQNEDNARDFISRGGAKELVQISIESSREDIRNLAKKTMKS 590 (600)
Q Consensus 541 ~Aa~aL~nLa~~~~~~~~lv~~G~l~~Lv~ll~~~~~~~ir~~A~~~L~~ 590 (600)
..+.+++|++.++-+..-|+++|.+.+|+++++..+.++++-.|+.+|-.
T Consensus 311 asVaCIrnisihplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrn 360 (550)
T KOG4224|consen 311 ASVACIRNISIHPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRN 360 (550)
T ss_pred HHHHHHhhcccccCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHH
Confidence 99999999999999999999999999999999999988888888877644
No 3
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.92 E-value=6.7e-24 Score=213.74 Aligned_cols=274 Identities=16% Similarity=0.203 Sum_probs=227.9
Q ss_pred cccCchHHHhcccCCC-CccccchHHHH---hh-cCchhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhC-Ccc
Q 007520 306 YTKDYISKGSSRFGAP-MSLQKSNPSRE---LS-GQRATIAKICDEVGLPKILQLLTSEDPDVQIHAVKVVANLAA-EDI 379 (600)
Q Consensus 306 ~~~g~i~~Lv~~L~s~-~~~~r~~a~~~---L~-~~~~~~~~i~e~GgV~~Lv~LL~s~~~~vr~~Aa~aL~nLa~-~~~ 379 (600)
++.|++|.++.+++.. .......|+++ ++ +......-+++.|+||.++.+|.+.+.+|++.|+|+|+|++. ++.
T Consensus 111 IdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~ 190 (526)
T COG5064 111 IDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEG 190 (526)
T ss_pred HhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchh
Confidence 7899999999999654 33444456655 33 344445557899999999999999999999999999999999 566
Q ss_pred hHHHHHHcCCHHHHHHHHccCC-CHHHHHHHHHHHHHhhcC--C-ccHHHHHHhCchhhhHhhhccCCCHHHHHHHHHHH
Q 007520 380 NQEKIVEEGGLDALLLLLRTSQ-NTTILRVASGAIANLAMN--E-MNQGLIMSRGGGQLLAKTASKTDDPQTLRMVAGAL 455 (600)
Q Consensus 380 ~~~~iv~~G~I~~Lv~lL~~~~-~~~v~~~Al~aL~NLa~~--~-~~r~~I~~~G~I~~Lv~lL~~~~~~~v~~~Aa~aL 455 (600)
.|..+..+|++.+++.+|.++. +..+.+.+.|+|.|||+. | +.-..|-. ++|.|.+++ .+.|+++...|||+|
T Consensus 191 ~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~isq--alpiL~KLi-ys~D~evlvDA~WAi 267 (526)
T COG5064 191 CRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQ--ALPILAKLI-YSRDPEVLVDACWAI 267 (526)
T ss_pred HHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHHHH--HHHHHHHHH-hhcCHHHHHHHHHHH
Confidence 7888999999999999987543 457889999999999986 3 34444433 689999999 458999999999999
Q ss_pred HHHhCCc-hhHHHHHHcChHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchhhhhcchhhHHHHHhCCcHHHHHHhhcCC
Q 007520 456 ANLCGNE-KLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSKTN 534 (600)
Q Consensus 456 ~nLa~~~-e~r~~i~~~G~i~~Lv~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~q~~~~~r~~l~e~g~l~~Lv~Ll~s~ 534 (600)
..|+..+ +....+++.|..+.|+.+|.+++..++..|++.++|+...+ ...-+.++..|+++.+..++.++
T Consensus 268 SYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~--------D~QTqviI~~G~L~a~~~lLs~~ 339 (526)
T COG5064 268 SYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGS--------DDQTQVIINCGALKAFRSLLSSP 339 (526)
T ss_pred HHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecC--------ccceehheecccHHHHHHHhcCh
Confidence 9999775 45567889999999999999999999999999999998654 23345688999999999999999
Q ss_pred CHHHHHHHHHHHHHhhc-CchhHHHHHHcccHHHHHHhhhcCChHHHHHHHHHHHhc
Q 007520 535 SASTRRHVELALCHLAQ-NEDNARDFISRGGAKELVQISIESSREDIRNLAKKTMKS 590 (600)
Q Consensus 535 ~~~v~~~Aa~aL~nLa~-~~~~~~~lv~~G~l~~Lv~ll~~~~~~~ir~~A~~~L~~ 590 (600)
...++..|||++.|++. +.+..+.+++...+|+|+.++.+......++++|.+++.
T Consensus 340 ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAisNa 396 (526)
T COG5064 340 KENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNA 396 (526)
T ss_pred hhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999965 667889999999999999999876655677888877653
No 4
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.91 E-value=5.6e-23 Score=249.31 Aligned_cols=273 Identities=19% Similarity=0.217 Sum_probs=232.0
Q ss_pred cccCchHHHhcccCCCCccccchHHHH---hhc-CchhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCcchH
Q 007520 306 YTKDYISKGSSRFGAPMSLQKSNPSRE---LSG-QRATIAKICDEVGLPKILQLLTSEDPDVQIHAVKVVANLAAEDINQ 381 (600)
Q Consensus 306 ~~~g~i~~Lv~~L~s~~~~~r~~a~~~---L~~-~~~~~~~i~e~GgV~~Lv~LL~s~~~~vr~~Aa~aL~nLa~~~~~~ 381 (600)
.+.|++|.|+.+|+++....+..++.. ++. ++.++..+++.||||+|+.+|.+++..++..|+++|+|++.++.+.
T Consensus 443 i~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qi 522 (2102)
T PLN03200 443 GGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDI 522 (2102)
T ss_pred HHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHH
Confidence 678999999999999887777666654 443 6667889999999999999999999999999999999999976654
Q ss_pred HH-HHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcCCccH-------------------------------------
Q 007520 382 EK-IVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMNEMNQ------------------------------------- 423 (600)
Q Consensus 382 ~~-iv~~G~I~~Lv~lL~~~~~~~v~~~Al~aL~NLa~~~~~r------------------------------------- 423 (600)
.. +..+|++++|+.+|. +.+..++..|+++|.||+.+.+..
T Consensus 523 r~iV~~aGAIppLV~LL~-sgd~~~q~~Aa~AL~nLi~~~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~ 601 (2102)
T PLN03200 523 RACVESAGAVPALLWLLK-NGGPKGQEIAAKTLTKLVRTADAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLV 601 (2102)
T ss_pred HHHHHHCCCHHHHHHHHh-CCCHHHHHHHHHHHHHHHhccchhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHH
Confidence 44 558899999999998 557889999999999997432111
Q ss_pred HH-HHHhCchhhhHhhhccCCCHHHHHHHHHHHHHHhC-CchhHHHHHHcChHHHHHHHHcCCCHHHHHHHHHHHHHhhc
Q 007520 424 GL-IMSRGGGQLLAKTASKTDDPQTLRMVAGALANLCG-NEKLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFAK 501 (600)
Q Consensus 424 ~~-I~~~G~I~~Lv~lL~~~~~~~v~~~Aa~aL~nLa~-~~e~r~~i~~~G~i~~Lv~lL~s~~~~v~~~A~~aL~nLa~ 501 (600)
.. +...||++.|+.++. ++++.+++.|+|+|.|++. +++.+..++..|+|++++.+|.+++.+++..|+|+|.|++.
T Consensus 602 ~~g~~~~ggL~~Lv~LL~-sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~ 680 (2102)
T PLN03200 602 REGSAANDALRTLIQLLS-SSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSR 680 (2102)
T ss_pred HHhhhccccHHHHHHHHc-CCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHh
Confidence 11 113689999999996 4788999999999999985 46788889999999999999999999999999999999996
Q ss_pred CCchhhhhcchhhHHHHHhCCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCchhHHHHHHcccHHHHHHhhhcCChHHHH
Q 007520 502 CESRAIVQGQRKGRSHLMEDSALEWLIANSKTNSASTRRHVELALCHLAQNEDNARDFISRGGAKELVQISIESSREDIR 581 (600)
Q Consensus 502 ~~~~~~~q~~~~~r~~l~e~g~l~~Lv~Ll~s~~~~v~~~Aa~aL~nLa~~~~~~~~lv~~G~l~~Lv~ll~~~~~~~ir 581 (600)
+. ....+..+++.|++|+|+.++.+.+..+...|+.+|.||+.+++.+..+...|++++|++++++++...-+
T Consensus 681 ~~-------~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e~~~ei~~~~~I~~Lv~lLr~G~~~~k~ 753 (2102)
T PLN03200 681 SI-------KENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPEVAAEALAEDIILPLTRVLREGTLEGKR 753 (2102)
T ss_pred CC-------CHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCchHHHHHHhcCcHHHHHHHHHhCChHHHH
Confidence 42 14556678899999999999999999999999999999999999999999999999999999998855444
Q ss_pred HHHHHH
Q 007520 582 NLAKKT 587 (600)
Q Consensus 582 ~~A~~~ 587 (600)
++|+.+
T Consensus 754 ~Aa~AL 759 (2102)
T PLN03200 754 NAARAL 759 (2102)
T ss_pred HHHHHH
Confidence 544433
No 5
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.91 E-value=6.5e-23 Score=248.76 Aligned_cols=273 Identities=17% Similarity=0.183 Sum_probs=231.2
Q ss_pred cccCchHHHhcccCCCCccccchHHHH---hh-cCchhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhC-Ccch
Q 007520 306 YTKDYISKGSSRFGAPMSLQKSNPSRE---LS-GQRATIAKICDEVGLPKILQLLTSEDPDVQIHAVKVVANLAA-EDIN 380 (600)
Q Consensus 306 ~~~g~i~~Lv~~L~s~~~~~r~~a~~~---L~-~~~~~~~~i~e~GgV~~Lv~LL~s~~~~vr~~Aa~aL~nLa~-~~~~ 380 (600)
.+.|+++.|++++..+....+..++.+ ++ ++.+.+..++..||+|.|+.+|.+++...+..|+++|+|++. ++.+
T Consensus 401 ~~~daik~LV~LL~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~nden 480 (2102)
T PLN03200 401 NHAEAKKVLVGLITMATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDES 480 (2102)
T ss_pred HhccchhhhhhhhccCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHH
Confidence 456889999999999988888877766 44 457788889999999999999999999999999999999997 6778
Q ss_pred HHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcCCccHHH-HHHhCchhhhHhhhccCCCHHHHHHHHHHHHHHh
Q 007520 381 QEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMNEMNQGL-IMSRGGGQLLAKTASKTDDPQTLRMVAGALANLC 459 (600)
Q Consensus 381 ~~~iv~~G~I~~Lv~lL~~~~~~~v~~~Al~aL~NLa~~~~~r~~-I~~~G~I~~Lv~lL~~~~~~~v~~~Aa~aL~nLa 459 (600)
+..|+++|+||+|+.+|. +++..++..|+|+|.||+.++.+... |.+.|+|++|+.+|.. +++.++..|+++|.||+
T Consensus 481 r~aIieaGaIP~LV~LL~-s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~s-gd~~~q~~Aa~AL~nLi 558 (2102)
T PLN03200 481 KWAITAAGGIPPLVQLLE-TGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKN-GGPKGQEIAAKTLTKLV 558 (2102)
T ss_pred HHHHHHCCCHHHHHHHHc-CCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhC-CCHHHHHHHHHHHHHHH
Confidence 999999999999999998 66889999999999999998655555 5478999999999964 68899999999999996
Q ss_pred CCchh-----------------HH--------------------H-HHHcChHHHHHHHHcCCCHHHHHHHHHHHHHhhc
Q 007520 460 GNEKL-----------------HT--------------------M-LEEDGAIKALLAMVRSGNIDVIAQVARGLANFAK 501 (600)
Q Consensus 460 ~~~e~-----------------r~--------------------~-i~~~G~i~~Lv~lL~s~~~~v~~~A~~aL~nLa~ 501 (600)
.+.+. +. . ....|+++.|+.++.++++.++..|+++|.|++.
T Consensus 559 ~~~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a 638 (2102)
T PLN03200 559 RTADAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFS 638 (2102)
T ss_pred hccchhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhc
Confidence 32111 00 0 1135899999999999999999999999999997
Q ss_pred CCchhhhhcchhhHHHHHhCCcHHHHHHhhcCCCHHHHHHHHHHHHHhhc--CchhHHHHHHcccHHHHHHhhhcCChHH
Q 007520 502 CESRAIVQGQRKGRSHLMEDSALEWLIANSKTNSASTRRHVELALCHLAQ--NEDNARDFISRGGAKELVQISIESSRED 579 (600)
Q Consensus 502 ~~~~~~~q~~~~~r~~l~e~g~l~~Lv~Ll~s~~~~v~~~Aa~aL~nLa~--~~~~~~~lv~~G~l~~Lv~ll~~~~~~~ 579 (600)
++ ++....++..|++|+|+.++.+++..++..++|+|.+++. +..++..+++.|++++|++++.+.+ ..
T Consensus 639 ~~--------~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d-~~ 709 (2102)
T PLN03200 639 SR--------QDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSS-IE 709 (2102)
T ss_pred CC--------hHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCCC-hH
Confidence 65 4566779999999999999999999999999999999985 3445677889999999999998765 56
Q ss_pred HHHHHHHHHh
Q 007520 580 IRNLAKKTMK 589 (600)
Q Consensus 580 ir~~A~~~L~ 589 (600)
+.+.|..+|.
T Consensus 710 v~e~Al~ALa 719 (2102)
T PLN03200 710 VAEQAVCALA 719 (2102)
T ss_pred HHHHHHHHHH
Confidence 7777766554
No 6
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=1.5e-22 Score=205.59 Aligned_cols=279 Identities=17% Similarity=0.157 Sum_probs=238.9
Q ss_pred cccCchHHHhcccCCCCccccchHHHH---hhcCchhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCcchHH
Q 007520 306 YTKDYISKGSSRFGAPMSLQKSNPSRE---LSGQRATIAKICDEVGLPKILQLLTSEDPDVQIHAVKVVANLAAEDINQE 382 (600)
Q Consensus 306 ~~~g~i~~Lv~~L~s~~~~~r~~a~~~---L~~~~~~~~~i~e~GgV~~Lv~LL~s~~~~vr~~Aa~aL~nLa~~~~~~~ 382 (600)
+.-+|+..|+..+-.+....+..+.+. |+..++++.++...||+.++.++-++.+..+|..|..+|.|++...++|.
T Consensus 123 v~l~Gl~~Li~qmmtd~vevqcnaVgCitnLaT~d~nk~kiA~sGaL~pltrLakskdirvqrnatgaLlnmThs~EnRr 202 (550)
T KOG4224|consen 123 VSLLGLDLLILQMMTDGVEVQCNAVGCITNLATFDSNKVKIARSGALEPLTRLAKSKDIRVQRNATGALLNMTHSRENRR 202 (550)
T ss_pred EeccChHHHHHHhcCCCcEEEeeehhhhhhhhccccchhhhhhccchhhhHhhcccchhhHHHHHHHHHHHhhhhhhhhh
Confidence 456677776666555655566656654 66678899999999999999998899999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcCCccHHHHHHhC--chhhhHhhhccCCCHHHHHHHHHHHHHHhC
Q 007520 383 KIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMNEMNQGLIMSRG--GGQLLAKTASKTDDPQTLRMVAGALANLCG 460 (600)
Q Consensus 383 ~iv~~G~I~~Lv~lL~~~~~~~v~~~Al~aL~NLa~~~~~r~~I~~~G--~I~~Lv~lL~~~~~~~v~~~Aa~aL~nLa~ 460 (600)
.++.+|++|.|+.++. +.+..++..|+.++.|++.+..+|+.+++.| .||.|+.++. ++++.+...|..+|+||+.
T Consensus 203 ~LV~aG~lpvLVsll~-s~d~dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~Lv~Lmd-~~s~kvkcqA~lALrnlas 280 (550)
T KOG4224|consen 203 VLVHAGGLPVLVSLLK-SGDLDVQYYCTTAISNIAVDRRARKILAQAEPKLVPALVDLMD-DGSDKVKCQAGLALRNLAS 280 (550)
T ss_pred hhhccCCchhhhhhhc-cCChhHHHHHHHHhhhhhhhHHHHHHHHhcccchHHHHHHHHh-CCChHHHHHHHHHHhhhcc
Confidence 9999999999999999 6788999999999999999999999999977 9999999995 5788999999999999999
Q ss_pred CchhHHHHHHcChHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchhhhhcchhhHHHHHhCCcHHHHHHhhcCCC-HHHH
Q 007520 461 NEKLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSKTNS-ASTR 539 (600)
Q Consensus 461 ~~e~r~~i~~~G~i~~Lv~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~q~~~~~r~~l~e~g~l~~Lv~Ll~s~~-~~v~ 539 (600)
+.+++..+++.|++|.++.+++++........+.+++|++.+. -+...+.+.|.+.+||+++..++ +.++
T Consensus 281 dt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihp---------lNe~lI~dagfl~pLVrlL~~~dnEeiq 351 (550)
T KOG4224|consen 281 DTEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHP---------LNEVLIADAGFLRPLVRLLRAGDNEEIQ 351 (550)
T ss_pred cchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhccccc---------CcccceecccchhHHHHHHhcCCchhhh
Confidence 9999999999999999999999998888889999999999763 34456889999999999999875 6699
Q ss_pred HHHHHHHHHhhc-CchhHHHHHHcccHHHHHHhhhcCChHHHH--HHHHHHHhcCcccc
Q 007520 540 RHVELALCHLAQ-NEDNARDFISRGGAKELVQISIESSREDIR--NLAKKTMKSNPRLQ 595 (600)
Q Consensus 540 ~~Aa~aL~nLa~-~~~~~~~lv~~G~l~~Lv~ll~~~~~~~ir--~~A~~~L~~~p~~~ 595 (600)
.+|+.+|+||+. +..++..|.++|+++.|..++.+++..-.. ..+...|..+-.|+
T Consensus 352 chAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~Lal~d~~k 410 (550)
T KOG4224|consen 352 CHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLALNDNDK 410 (550)
T ss_pred hhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHHhccccH
Confidence 999999999977 566889999999999999999987754322 23344454444433
No 7
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=1.5e-21 Score=210.42 Aligned_cols=297 Identities=15% Similarity=0.192 Sum_probs=237.3
Q ss_pred hHHHHHHHHhccCCCCCCccccccc-cccCchHHHhcccCCCCccccchHHHH---hhcCch-hHHHHHhcCCHHHHHHh
Q 007520 281 AIEYELVKLKKTAPEHDDDFEDKKP-YTKDYISKGSSRFGAPMSLQKSNPSRE---LSGQRA-TIAKICDEVGLPKILQL 355 (600)
Q Consensus 281 ~le~~~~~l~~~l~~l~~~~~~~~~-~~~g~i~~Lv~~L~s~~~~~r~~a~~~---L~~~~~-~~~~i~e~GgV~~Lv~L 355 (600)
.++.+.++..-..+..+.+ .++. ++.|++|.++.++.++....+..|+++ ++++.+ .+..++..|++++|+.+
T Consensus 125 ~lq~eAAWaLTnIAsgtse--~T~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~ 202 (514)
T KOG0166|consen 125 TLQFEAAWALTNIASGTSE--QTKVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRL 202 (514)
T ss_pred hHHHHHHHHHHHHhcCchh--hccccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHH
Confidence 3455555555454333333 3333 899999999999999999898888877 556544 66678899999999999
Q ss_pred hCCCCH-HHHHHHHHHHHHhhCCc-chHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcC-CccHHHHHHhCch
Q 007520 356 LTSEDP-DVQIHAVKVVANLAAED-INQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMN-EMNQGLIMSRGGG 432 (600)
Q Consensus 356 L~s~~~-~vr~~Aa~aL~nLa~~~-~~~~~iv~~G~I~~Lv~lL~~~~~~~v~~~Al~aL~NLa~~-~~~r~~I~~~G~I 432 (600)
+...+. ...+.+.|+|.||+.+. +.-..-.-..++|.|..++. +.|+++...|+|||++|+.+ ++.-..+++.|++
T Consensus 203 l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~-~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv 281 (514)
T KOG0166|consen 203 LNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLH-STDEEVLTDACWALSYLTDGSNEKIQMVIDAGVV 281 (514)
T ss_pred hccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHhcCChHHHHHHHHccch
Confidence 986665 78899999999999843 22111112336899999998 77999999999999999977 7788888999999
Q ss_pred hhhHhhhccCCCHHHHHHHHHHHHHHh-CCchhHHHHHHcChHHHHHHHHc-CCCHHHHHHHHHHHHHhhcCCchhhhhc
Q 007520 433 QLLAKTASKTDDPQTLRMVAGALANLC-GNEKLHTMLEEDGAIKALLAMVR-SGNIDVIAQVARGLANFAKCESRAIVQG 510 (600)
Q Consensus 433 ~~Lv~lL~~~~~~~v~~~Aa~aL~nLa-~~~e~r~~i~~~G~i~~Lv~lL~-s~~~~v~~~A~~aL~nLa~~~~~~~~q~ 510 (600)
|.|+.+|.. .++.++..|++++.|++ +++.-.+.+++.|+++.|..++. ++...++..|||+++|++.++
T Consensus 282 ~~LV~lL~~-~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~------- 353 (514)
T KOG0166|consen 282 PRLVDLLGH-SSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGN------- 353 (514)
T ss_pred HHHHHHHcC-CCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCC-------
Confidence 999999965 66788899999999997 45566677889999999999998 666668999999999999875
Q ss_pred chhhHHHHHhCCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcC--chhHHHHHHcccHHHHHHhhhcCChHHHHHHHHHHH
Q 007520 511 QRKGRSHLMEDSALEWLIANSKTNSASTRRHVELALCHLAQN--EDNARDFISRGGAKELVQISIESSREDIRNLAKKTM 588 (600)
Q Consensus 511 ~~~~r~~l~e~g~l~~Lv~Ll~s~~~~v~~~Aa~aL~nLa~~--~~~~~~lv~~G~l~~Lv~ll~~~~~~~ir~~A~~~L 588 (600)
....+.+++.|.+|+|+.++.+++-.++..|+||++|++.+ ++....+++.|.+++|+.++...+ ..+...+...|
T Consensus 354 -~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g~~~qi~yLv~~giI~plcdlL~~~D-~~ii~v~Ld~l 431 (514)
T KOG0166|consen 354 -QEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSSGTPEQIKYLVEQGIIKPLCDLLTCPD-VKIILVALDGL 431 (514)
T ss_pred -HHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhcccCCHHHHHHHHHcCCchhhhhcccCCC-hHHHHHHHHHH
Confidence 45667789999999999999999999999999999999764 456788889999999999995444 44555555544
Q ss_pred hc
Q 007520 589 KS 590 (600)
Q Consensus 589 ~~ 590 (600)
..
T Consensus 432 ~n 433 (514)
T KOG0166|consen 432 EN 433 (514)
T ss_pred HH
Confidence 43
No 8
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.84 E-value=7.5e-20 Score=184.66 Aligned_cols=270 Identities=15% Similarity=0.144 Sum_probs=224.8
Q ss_pred cccCchHHHhcccCCCCccccchHHHH---hhcCc-hhHHHHHhcCCHHHHHHhhCCCCH--HHHHHHHHHHHHhhC--C
Q 007520 306 YTKDYISKGSSRFGAPMSLQKSNPSRE---LSGQR-ATIAKICDEVGLPKILQLLTSEDP--DVQIHAVKVVANLAA--E 377 (600)
Q Consensus 306 ~~~g~i~~Lv~~L~s~~~~~r~~a~~~---L~~~~-~~~~~i~e~GgV~~Lv~LL~s~~~--~vr~~Aa~aL~nLa~--~ 377 (600)
++.|++|.++.+|.++...++.++.++ ++++. .++..+.+.|++++++.++.+.-. .+.+.+.|.|.||+. +
T Consensus 154 vd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGkn 233 (526)
T COG5064 154 VDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKN 233 (526)
T ss_pred EeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCC
Confidence 899999999999999998899888877 56654 466678899999999999976544 678999999999997 4
Q ss_pred c-chHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcC-CccHHHHHHhCchhhhHhhhccCCCHHHHHHHHHHH
Q 007520 378 D-INQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMN-EMNQGLIMSRGGGQLLAKTASKTDDPQTLRMVAGAL 455 (600)
Q Consensus 378 ~-~~~~~iv~~G~I~~Lv~lL~~~~~~~v~~~Al~aL~NLa~~-~~~r~~I~~~G~I~~Lv~lL~~~~~~~v~~~Aa~aL 455 (600)
| ++-..+.. ++|.|.+++. +.|+++...|+||+..|+.. .+...++++.|+.+.|+++|.+ ++..++.-|++.+
T Consensus 234 P~P~w~~isq--alpiL~KLiy-s~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~-~sa~iqtPalR~v 309 (526)
T COG5064 234 PPPDWSNISQ--ALPILAKLIY-SRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSH-ESAKIQTPALRSV 309 (526)
T ss_pred CCCchHHHHH--HHHHHHHHHh-hcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcC-ccccccCHHHHhh
Confidence 4 34444544 4888999988 67889999999999999988 4567788899999999999964 7778999999999
Q ss_pred HHHhCCch-hHHHHHHcChHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchhhhhcchhhHHHHHhCCcHHHHHHhhcCC
Q 007520 456 ANLCGNEK-LHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSKTN 534 (600)
Q Consensus 456 ~nLa~~~e-~r~~i~~~G~i~~Lv~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~q~~~~~r~~l~e~g~l~~Lv~Ll~s~ 534 (600)
+|+....+ -...++..|+++++..+|.++...++..|||+++|++..+. ..-..+++.+.+|+|+.++...
T Consensus 310 GNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAGnt--------eqiqavid~nliPpLi~lls~a 381 (526)
T COG5064 310 GNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITAGNT--------EQIQAVIDANLIPPLIHLLSSA 381 (526)
T ss_pred cCeeecCccceehheecccHHHHHHHhcChhhhhhhhhheeecccccCCH--------HHHHHHHhcccchHHHHHHHHH
Confidence 99975544 45667889999999999999888999999999999998763 3455688999999999999999
Q ss_pred CHHHHHHHHHHHHHhhc----CchhHHHHHHcccHHHHHHhhhcCChHHHHHHHHHHH
Q 007520 535 SASTRRHVELALCHLAQ----NEDNARDFISRGGAKELVQISIESSREDIRNLAKKTM 588 (600)
Q Consensus 535 ~~~v~~~Aa~aL~nLa~----~~~~~~~lv~~G~l~~Lv~ll~~~~~~~ir~~A~~~L 588 (600)
+-.++..||||+.|.+. .|+..+.+++.|++.+|+.++.-.+. .+-+.+...+
T Consensus 382 e~k~kKEACWAisNatsgg~~~PD~iryLv~qG~IkpLc~~L~~~dN-kiiev~LD~~ 438 (526)
T COG5064 382 EYKIKKEACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVDN-KIIEVALDAI 438 (526)
T ss_pred HHHHHHHHHHHHHhhhccccCCchHHHHHHHccchhHHHHHHhccCc-cchhhhHHHH
Confidence 99999999999999965 35677888899999999999976553 3444454443
No 9
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.83 E-value=2.5e-18 Score=194.59 Aligned_cols=277 Identities=17% Similarity=0.166 Sum_probs=228.9
Q ss_pred cccCchHHHhcccCCCCccccchHHHH---hhcCchhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCcchHH
Q 007520 306 YTKDYISKGSSRFGAPMSLQKSNPSRE---LSGQRATIAKICDEVGLPKILQLLTSEDPDVQIHAVKVVANLAAEDINQE 382 (600)
Q Consensus 306 ~~~g~i~~Lv~~L~s~~~~~r~~a~~~---L~~~~~~~~~i~e~GgV~~Lv~LL~s~~~~vr~~Aa~aL~nLa~~~~~~~ 382 (600)
...|+++.|+.+|++++......++.. |+...+++..+.+.|.|++|+.++.+++.+++..++.+|.|||.++..|.
T Consensus 287 ~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd~~~R~ 366 (708)
T PF05804_consen 287 VNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLLPSENEDLVNVALRLLFNLSFDPELRS 366 (708)
T ss_pred HhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHhCcCHHHHH
Confidence 689999999999999877666655554 88899999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcCCccHHHHHHhCchhhhHhhhccCCCHHHHHHHHHHHHHHhCCc
Q 007520 383 KIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMNEMNQGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLCGNE 462 (600)
Q Consensus 383 ~iv~~G~I~~Lv~lL~~~~~~~v~~~Al~aL~NLa~~~~~r~~I~~~G~I~~Lv~lL~~~~~~~v~~~Aa~aL~nLa~~~ 462 (600)
.++..|++|.|+.+|.+ +..+..|+.+|+|||.++.++..+...+++|.++.++..++++.+...+++++.|||.++
T Consensus 367 ~mV~~GlIPkLv~LL~d---~~~~~val~iLy~LS~dd~~r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~ 443 (708)
T PF05804_consen 367 QMVSLGLIPKLVELLKD---PNFREVALKILYNLSMDDEARSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLALNK 443 (708)
T ss_pred HHHHCCCcHHHHHHhCC---CchHHHHHHHHHHhccCHhhHHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcCH
Confidence 99999999999999983 345677999999999999999999999999999999877677777778889999999999
Q ss_pred hhHHHHHHcChHHHHHHHH-c-------------------------------------CCCHHHHHHHHHHHHHhhcCCc
Q 007520 463 KLHTMLEEDGAIKALLAMV-R-------------------------------------SGNIDVIAQVARGLANFAKCES 504 (600)
Q Consensus 463 e~r~~i~~~G~i~~Lv~lL-~-------------------------------------s~~~~v~~~A~~aL~nLa~~~~ 504 (600)
.+...+.+.|+++.|+... + .++++....++++|+||+..+.
T Consensus 444 rnaqlm~~g~gL~~L~~ra~~~~D~lLlKlIRNiS~h~~~~k~~f~~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~l 523 (708)
T PF05804_consen 444 RNAQLMCEGNGLQSLMKRALKTRDPLLLKLIRNISQHDGPLKELFVDFIGDLAKIVSSGDSEEFVVECLGILANLTIPDL 523 (708)
T ss_pred HHHHHHHhcCcHHHHHHHHHhcccHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhcccCCc
Confidence 9998888888877655432 1 1244556677888888875432
Q ss_pred hhhhhcchhhHHHHHhCCcHHHHHHhhcCC--CHHHHHHHHHHHHHhhcCchhHHHHHHcccHHHHHHhhhcCChHH--H
Q 007520 505 RAIVQGQRKGRSHLMEDSALEWLIANSKTN--SASTRRHVELALCHLAQNEDNARDFISRGGAKELVQISIESSRED--I 580 (600)
Q Consensus 505 ~~~~q~~~~~r~~l~e~g~l~~Lv~Ll~s~--~~~v~~~Aa~aL~nLa~~~~~~~~lv~~G~l~~Lv~ll~~~~~~~--i 580 (600)
+....+.+.+.+|+|..++.++ .+.+...++.++..+|.++.++..+.+.|.++.|+.++.+...++ +
T Consensus 524 --------d~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~d~~~A~lL~~sgli~~Li~LL~~kqeDdE~V 595 (708)
T PF05804_consen 524 --------DWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLASDPECAPLLAKSGLIPTLIELLNAKQEDDEIV 595 (708)
T ss_pred --------CHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHCCHHHHHHHHhCChHHHHHHHHHhhCchHHHH
Confidence 2344566789999999998765 467889999999999999999999999999999999998765332 4
Q ss_pred HHHHH---HHHhcCcc
Q 007520 581 RNLAK---KTMKSNPR 593 (600)
Q Consensus 581 r~~A~---~~L~~~p~ 593 (600)
.+... +.|.+.++
T Consensus 596 lQil~~f~~ll~h~~t 611 (708)
T PF05804_consen 596 LQILYVFYQLLFHEET 611 (708)
T ss_pred HHHHHHHHHHHcChHH
Confidence 44433 55555443
No 10
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.82 E-value=6.7e-18 Score=170.63 Aligned_cols=397 Identities=15% Similarity=0.180 Sum_probs=283.0
Q ss_pred hhhhhhhhhhhHHHHHHHHHHhHhHHHhhhhhHHHHHHHHHHHhhhhhccc-chhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 007520 168 QKALADTTQLYEKKIAELNKKLEDEHACFEGAVEQLDMVKKLLSDYQNSNQ-GQKEVHELCVKLKETRQLHESAVYEVQT 246 (600)
Q Consensus 168 ~~~l~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~~~~~~~~~~~q~~~~-~~~e~~~l~~~~~d~~~~~e~~~~el~~ 246 (600)
..+...++.+|+.++..|.+++++-- ....+.. +.+....++.+.+.- .-.|..+|.+.+.| ++++ +
T Consensus 26 eea~~e~I~qfe~qgi~l~nIik~~s-v~~~~~q--p~i~~~~~~i~e~i~~~~~E~s~ll~~l~d---~ck~-~----- 93 (461)
T KOG4199|consen 26 SEAKEETIKQFEAQGINLANIIKDLS-VNPQTGQ--PVINETVDKIKEHIGQKLEETTELLEQLAD---ECKK-S----- 93 (461)
T ss_pred cccchHHHHHHHhccCcccccccccC-CCCCCCC--ccHHHhHHHHHHHHHhhhHHHHHHHHHHHH---HHhh-h-----
Confidence 34556699999999999999999653 3222222 335666667776664 33467777777775 3332 1
Q ss_pred HHHHHHHHHHhhhhchHHHHHHHHhhhHHHHhhhhHHHHHHHHhccCCCCCCccccccc-cccCchHHHhcccCCCCccc
Q 007520 247 LKSEYKNLLEEKETMSDELQAARQRLLVEEKQRKAIEYELVKLKKTAPEHDDDFEDKKP-YTKDYISKGSSRFGAPMSLQ 325 (600)
Q Consensus 247 l~~~~~~l~~~~~~~~~el~~~~~~l~~e~~~~~~le~~~~~l~~~l~~l~~~~~~~~~-~~~g~i~~Lv~~L~s~~~~~ 325 (600)
+..+. ....++..+-+..+.. + .+.....-+...++.+... .+..++ ++..++..++..|.......
T Consensus 94 ~A~r~---la~~~ga~~~~it~~~-l-a~~~~~~~l~ksL~al~~l-------t~~qpdl~da~g~~vvv~lL~~~~~~~ 161 (461)
T KOG4199|consen 94 LAHRV---LAGKNGAHDALITLLE-L-AESPNESVLKKSLEAINSL-------THKQPDLFDAEAMAVVLKLLALKVESE 161 (461)
T ss_pred HHHHH---HhccCCCcchhhhHHH-H-hhCCchhHHHHHHHHHHHh-------hcCCcchhccccHHHHHHHHhcccchH
Confidence 22111 2223344444443333 2 2222223333444444432 222233 78888888888886543322
Q ss_pred cch-----HHHH-hhcCchhHHHHHhcCCHHHHHHhhC-CCCHHHHHHHHHHHHHhhCCcc----------hHHHHHHcC
Q 007520 326 KSN-----PSRE-LSGQRATIAKICDEVGLPKILQLLT-SEDPDVQIHAVKVVANLAAEDI----------NQEKIVEEG 388 (600)
Q Consensus 326 r~~-----a~~~-L~~~~~~~~~i~e~GgV~~Lv~LL~-s~~~~vr~~Aa~aL~nLa~~~~----------~~~~iv~~G 388 (600)
-.. .+.. .-.++-+++.|++.+.++.+...|. .+...+.+.+.++++.|..+++ +...|+..|
T Consensus 162 dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~ 241 (461)
T KOG4199|consen 162 EVTLLTLQWLQKACIMHEVNRQLFMELKILELILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEG 241 (461)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhh
Confidence 221 1222 4568889999999999999986664 4444677888999999887654 356788889
Q ss_pred CHHHHHHHHccCCCHHHHHHHHHHHHHhhcCCccHHHHHHhCchhhhHhhhccCCCHHHH---HHHHHHHHHHhCCchhH
Q 007520 389 GLDALLLLLRTSQNTTILRVASGAIANLAMNEMNQGLIMSRGGGQLLAKTASKTDDPQTL---RMVAGALANLCGNEKLH 465 (600)
Q Consensus 389 ~I~~Lv~lL~~~~~~~v~~~Al~aL~NLa~~~~~r~~I~~~G~I~~Lv~lL~~~~~~~v~---~~Aa~aL~nLa~~~e~r 465 (600)
++..|+..+..+-++.+...++.+|..|+..++.+..|.+.||+..|+.++.++++...+ +.++..|+.|+++++++
T Consensus 242 ~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~DsvK 321 (461)
T KOG4199|consen 242 ILTALTEALQAGIDPDSLVSLSTTLKALAVRDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDSVK 321 (461)
T ss_pred hHHHHHHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCchH
Confidence 999999999988888899999999999999999999999999999999999876665544 56778999999999999
Q ss_pred HHHHHcChHHHHHHHH--cCCCHHHHHHHHHHHHHhhcCCchhhhhcchhhHHHHHhCCcHHHHHHhhcCC--CHHHHHH
Q 007520 466 TMLEEDGAIKALLAMV--RSGNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSKTN--SASTRRH 541 (600)
Q Consensus 466 ~~i~~~G~i~~Lv~lL--~s~~~~v~~~A~~aL~nLa~~~~~~~~q~~~~~r~~l~e~g~l~~Lv~Ll~s~--~~~v~~~ 541 (600)
..|++.||.+.++.++ ++++|.|...++.+++-|+...| +.-..+++.|+-...+..++.. ...++++
T Consensus 322 s~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR~p--------dhsa~~ie~G~a~~avqAmkahP~~a~vQrn 393 (461)
T KOG4199|consen 322 STIVEKGGLDKIITLALRHSDDPLVIQEVMAIISILCLRSP--------DHSAKAIEAGAADLAVQAMKAHPVAAQVQRN 393 (461)
T ss_pred HHHHHhcChHHHHHHHHHcCCChHHHHHHHHHHHHHHhcCc--------chHHHHHhcchHHHHHHHHHhCcHHHHHHHH
Confidence 9999999999999997 58899999999999999998874 4555688999999999887654 4779999
Q ss_pred HHHHHHHhhcCch-hHHHHHHcccHHHHHHhhhcCChH--HHHHHHHHHHhcCcccccc
Q 007520 542 VELALCHLAQNED-NARDFISRGGAKELVQISIESSRE--DIRNLAKKTMKSNPRLQAD 597 (600)
Q Consensus 542 Aa~aL~nLa~~~~-~~~~lv~~G~l~~Lv~ll~~~~~~--~ir~~A~~~L~~~p~~~~e 597 (600)
|||+++||+..+. ++..++. .|++.|++..++.++. ..-..|.+-|-.+-+++.|
T Consensus 394 ac~~IRNiv~rs~~~~~~~l~-~GiE~Li~~A~~~h~tce~~akaALRDLGc~v~lre~ 451 (461)
T KOG4199|consen 394 ACNMIRNIVVRSAENRTILLA-NGIEKLIRTAKANHETCEAAAKAALRDLGCDVYLREE 451 (461)
T ss_pred HHHHHHHHHHhhhhccchHHh-ccHHHHHHHHHhcCccHHHHHHHHHHhcCcchhhHHH
Confidence 9999999976554 5555554 5779999988766543 3555566666555555443
No 11
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.76 E-value=2.7e-16 Score=180.34 Aligned_cols=256 Identities=20% Similarity=0.221 Sum_probs=209.3
Q ss_pred hhcCchhHHHHHhcCCHHHHHHhhCC------------CCHHHHHHHHHHHHHhhC-CcchHHHHH-HcCCHHHHHHHHc
Q 007520 333 LSGQRATIAKICDEVGLPKILQLLTS------------EDPDVQIHAVKVVANLAA-EDINQEKIV-EEGGLDALLLLLR 398 (600)
Q Consensus 333 L~~~~~~~~~i~e~GgV~~Lv~LL~s------------~~~~vr~~Aa~aL~nLa~-~~~~~~~iv-~~G~I~~Lv~lL~ 398 (600)
++.+++.+..+.+.||++.|-.|+.. ....+|+.|+.+|.||++ +..|+..++ ..|++.++|..|.
T Consensus 325 ~SFDEEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~ 404 (2195)
T KOG2122|consen 325 LSFDEEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLCSQRGFMEAVVAQLI 404 (2195)
T ss_pred hhccHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhhhhhhHHHHHHHHHh
Confidence 67789999999999998888877641 135689999999999999 556677777 5788999999998
Q ss_pred cCCCHHHHHHHHHHHHHhhcC-CccHHHHH-HhCchhhhHhhhccCCCHHHHHHHHHHHHHHh-CCchhHHHHHH-cChH
Q 007520 399 TSQNTTILRVASGAIANLAMN-EMNQGLIM-SRGGGQLLAKTASKTDDPQTLRMVAGALANLC-GNEKLHTMLEE-DGAI 474 (600)
Q Consensus 399 ~~~~~~v~~~Al~aL~NLa~~-~~~r~~I~-~~G~I~~Lv~lL~~~~~~~v~~~Aa~aL~nLa-~~~e~r~~i~~-~G~i 474 (600)
....++....+++|+||+|. +.|-..+. +.|-+..|+.+........++..++.+||||+ +..+++..|.. .|++
T Consensus 405 -s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcteNKA~iCaVDGAL 483 (2195)
T KOG2122|consen 405 -SAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKKESTLKAVLSALWNLSAHCTENKAEICAVDGAL 483 (2195)
T ss_pred -cChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhcccccchhhhcccchH
Confidence 55667899999999999999 66655555 58989999887656556678999999999997 55789999887 6999
Q ss_pred HHHHHHHc----CCCHHHHHHHHHHHHHhhcCCchhhhhcchhhHHHHHhCCcHHHHHHhhcCCCHHHHHHHHHHHHHh-
Q 007520 475 KALLAMVR----SGNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSKTNSASTRRHVELALCHL- 549 (600)
Q Consensus 475 ~~Lv~lL~----s~~~~v~~~A~~aL~nLa~~~~~~~~q~~~~~r~~l~e~g~l~~Lv~Ll~s~~~~v~~~Aa~aL~nL- 549 (600)
..||++|. +....+.+.|.++|.|++.+-. ..+.+|+++.++.++..|+..|++.+-.|.-++|++||||
T Consensus 484 aFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IA-----t~E~yRQILR~~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLS 558 (2195)
T KOG2122|consen 484 AFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIA-----TCEDYRQILRRHNCLQTLLQHLKSHSLTIVSNACGTLWNLS 558 (2195)
T ss_pred HHHHhhccccCCcchhhhhhcCccHHHHHHhHhh-----ccchHHHHHHHhhHHHHHHHHhhhcceEEeecchhhhhhhh
Confidence 99999995 4566789999999999986521 1267999999999999999999999999999999999999
Q ss_pred hcCchhHHHHHHcccHHHHHHhhhcCChHHHHHHHHHHHhcCcccc
Q 007520 550 AQNEDNARDFISRGGAKELVQISIESSREDIRNLAKKTMKSNPRLQ 595 (600)
Q Consensus 550 a~~~~~~~~lv~~G~l~~Lv~ll~~~~~~~ir~~A~~~L~~~p~~~ 595 (600)
+.++...+.+++.|+++.|.+++++.+.. |..-+...|.+...|+
T Consensus 559 AR~p~DQq~LwD~gAv~mLrnLIhSKhkM-Ia~GSaaALrNLln~R 603 (2195)
T KOG2122|consen 559 ARSPEDQQMLWDDGAVPMLRNLIHSKHKM-IAMGSAAALRNLLNFR 603 (2195)
T ss_pred cCCHHHHHHHHhcccHHHHHHHHhhhhhh-hhhhHHHHHHHHhcCC
Confidence 56888889999999999999999987754 4444444444444443
No 12
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.74 E-value=3e-16 Score=177.84 Aligned_cols=244 Identities=18% Similarity=0.231 Sum_probs=209.5
Q ss_pred HhhcCchhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCcchHHHHHHcCCHHHHHHHHccCCCHHHHHHHHH
Q 007520 332 ELSGQRATIAKICDEVGLPKILQLLTSEDPDVQIHAVKVVANLAAEDINQEKIVEEGGLDALLLLLRTSQNTTILRVASG 411 (600)
Q Consensus 332 ~L~~~~~~~~~i~e~GgV~~Lv~LL~s~~~~vr~~Aa~aL~nLa~~~~~~~~iv~~G~I~~Lv~lL~~~~~~~v~~~Al~ 411 (600)
+++.+.....++...|+|+.|+.+|.+++.++...++.+|.+|+.+.+|+..+.+.|+|++|+.++. +++..+...+++
T Consensus 275 NLAed~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl~-s~~~~l~~~aLr 353 (708)
T PF05804_consen 275 NLAEDPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLLP-SENEDLVNVALR 353 (708)
T ss_pred HHhcChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHhc-CCCHHHHHHHHH
Confidence 3667888888999999999999999999999999999999999999999999999999999999998 678889999999
Q ss_pred HHHHhhcCCccHHHHHHhCchhhhHhhhccCCCHHHHHHHHHHHHHHhCCchhHHHHHHcChHHHHHHHH-cCCCHHHHH
Q 007520 412 AIANLAMNEMNQGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLCGNEKLHTMLEEDGAIKALLAMV-RSGNIDVIA 490 (600)
Q Consensus 412 aL~NLa~~~~~r~~I~~~G~I~~Lv~lL~~~~~~~v~~~Aa~aL~nLa~~~e~r~~i~~~G~i~~Lv~lL-~s~~~~v~~ 490 (600)
+|.||+.++++|..|++.|++|.|+.+|.+ +..+..++.+|.|||.+++.+..|...+++|.++.++ ..+++.+..
T Consensus 354 lL~NLSfd~~~R~~mV~~GlIPkLv~LL~d---~~~~~val~iLy~LS~dd~~r~~f~~TdcIp~L~~~Ll~~~~~~v~~ 430 (708)
T PF05804_consen 354 LLFNLSFDPELRSQMVSLGLIPKLVELLKD---PNFREVALKILYNLSMDDEARSMFAYTDCIPQLMQMLLENSEEEVQL 430 (708)
T ss_pred HHHHhCcCHHHHHHHHHCCCcHHHHHHhCC---CchHHHHHHHHHHhccCHhhHHHHhhcchHHHHHHHHHhCCCccccH
Confidence 999999999999999999999999999954 3455668889999999999999999999999999986 456777778
Q ss_pred HHHHHHHHhhcCCchhhhhcchhhHHHHHhCCcHHHHHHhh-cCCCHHHHHHHHHHHHHhhcCchhHHHHHHcccHHHHH
Q 007520 491 QVARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANS-KTNSASTRRHVELALCHLAQNEDNARDFISRGGAKELV 569 (600)
Q Consensus 491 ~A~~aL~nLa~~~~~~~~q~~~~~r~~l~e~g~l~~Lv~Ll-~s~~~~v~~~Aa~aL~nLa~~~~~~~~lv~~G~l~~Lv 569 (600)
.++.++.||+.. +.+.+.|.+.||++.|+... +..++- ....++|++.+++..+.+.. +.+..|+
T Consensus 431 eliaL~iNLa~~---------~rnaqlm~~g~gL~~L~~ra~~~~D~l----LlKlIRNiS~h~~~~k~~f~-~~i~~L~ 496 (708)
T PF05804_consen 431 ELIALLINLALN---------KRNAQLMCEGNGLQSLMKRALKTRDPL----LLKLIRNISQHDGPLKELFV-DFIGDLA 496 (708)
T ss_pred HHHHHHHHHhcC---------HHHHHHHHhcCcHHHHHHHHHhcccHH----HHHHHHHHHhcCchHHHHHH-HHHHHHH
Confidence 899999999965 34556788889999999964 444433 33589999998854444442 4899999
Q ss_pred HhhhcCChHHHHHHHHHHHhcCcc
Q 007520 570 QISIESSREDIRNLAKKTMKSNPR 593 (600)
Q Consensus 570 ~ll~~~~~~~ir~~A~~~L~~~p~ 593 (600)
.++..++.++..-.+..+|.+.+.
T Consensus 497 ~~v~~~~~ee~~vE~LGiLaNL~~ 520 (708)
T PF05804_consen 497 KIVSSGDSEEFVVECLGILANLTI 520 (708)
T ss_pred HHhhcCCcHHHHHHHHHHHHhccc
Confidence 999988888888888888887753
No 13
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.71 E-value=5.1e-16 Score=172.55 Aligned_cols=281 Identities=22% Similarity=0.265 Sum_probs=212.9
Q ss_pred ccCchHHHhcccCCCCccccchHHHH---h-hcCchhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhC-C--cc
Q 007520 307 TKDYISKGSSRFGAPMSLQKSNPSRE---L-SGQRATIAKICDEVGLPKILQLLTSEDPDVQIHAVKVVANLAA-E--DI 379 (600)
Q Consensus 307 ~~g~i~~Lv~~L~s~~~~~r~~a~~~---L-~~~~~~~~~i~e~GgV~~Lv~LL~s~~~~vr~~Aa~aL~nLa~-~--~~ 379 (600)
..-.+|..+.++.+..+.....|+.. + .++...+..+.+.|||+.||.+|.+.+.+|+..|+++|.||.+ . +.
T Consensus 231 ~d~~lpe~i~mL~~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~ 310 (717)
T KOG1048|consen 231 RDPTLPEVISMLMSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDS 310 (717)
T ss_pred cccccHHHHHHHhccChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcc
Confidence 34456777888887766665555543 3 4567777889999999999999999999999999999999997 3 45
Q ss_pred hHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcCCccHHHHHHhCchhhhHhhhcc-------------CCCHH
Q 007520 380 NQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMNEMNQGLIMSRGGGQLLAKTASK-------------TDDPQ 446 (600)
Q Consensus 380 ~~~~iv~~G~I~~Lv~lL~~~~~~~v~~~Al~aL~NLa~~~~~r~~I~~~G~I~~Lv~lL~~-------------~~~~~ 446 (600)
|+..|.+.+||+.++.+|+...|.++++.+.++||||+.++..+..|+.. ++..|..-+-. ..++.
T Consensus 311 NKlai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~lK~~ii~~-al~tLt~~vI~P~Sgw~~~~~~~~~~~~~ 389 (717)
T KOG1048|consen 311 NKLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSNDALKMLIITS-ALSTLTDNVIIPHSGWEEEPAPRKAEDST 389 (717)
T ss_pred cchhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchhHHHHHHHHH-HHHHHHHhhcccccccCCCCcccccccce
Confidence 89999999999999999998889999999999999999998888777765 44444332211 01356
Q ss_pred HHHHHHHHHHHHhC-CchhHHHHHH-cChHHHHHHHHc------CCCHHHHHHHHHHHHHhhcCCc-h------------
Q 007520 447 TLRMVAGALANLCG-NEKLHTMLEE-DGAIKALLAMVR------SGNIDVIAQVARGLANFAKCES-R------------ 505 (600)
Q Consensus 447 v~~~Aa~aL~nLa~-~~e~r~~i~~-~G~i~~Lv~lL~------s~~~~v~~~A~~aL~nLa~~~~-~------------ 505 (600)
+...++++|+|++. ..+.|..+.+ .|.|..|+..++ ..+....++|+.+|+||+..-. +
T Consensus 390 vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~ 469 (717)
T KOG1048|consen 390 VFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANI 469 (717)
T ss_pred eeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhcc
Confidence 78889999999975 5778888876 588888888874 3445567778888888763211 0
Q ss_pred --------------hh-----------------------------------------------------hhc--------
Q 007520 506 --------------AI-----------------------------------------------------VQG-------- 510 (600)
Q Consensus 506 --------------~~-----------------------------------------------------~q~-------- 510 (600)
+. +.|
T Consensus 470 ~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~ 549 (717)
T KOG1048|consen 470 ARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAG 549 (717)
T ss_pred cccccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhcc
Confidence 00 000
Q ss_pred ----chhhHH-HHHhCCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCchhHHHHHHcccHHHHHHhhhcCCh-----HHH
Q 007520 511 ----QRKGRS-HLMEDSALEWLIANSKTNSASTRRHVELALCHLAQNEDNARDFISRGGAKELVQISIESSR-----EDI 580 (600)
Q Consensus 511 ----~~~~r~-~l~e~g~l~~Lv~Ll~s~~~~v~~~Aa~aL~nLa~~~~~~~~lv~~G~l~~Lv~ll~~~~~-----~~i 580 (600)
....+. ++....++|+|+.+++.+++.|...++.+|+||+.+..++..|. .++++.|++.+..+.. +++
T Consensus 550 ~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~rnk~lig-k~a~~~lv~~Lp~~~~~~~~sedt 628 (717)
T KOG1048|consen 550 LWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDIRNKELIG-KYAIPDLVRCLPGSGPSTSLSEDT 628 (717)
T ss_pred CCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccCchhhhhhh-cchHHHHHHhCcCCCCCcCchHHH
Confidence 011233 44778999999999999999999999999999999999977666 7899999999987665 444
Q ss_pred HHHHHHHHh
Q 007520 581 RNLAKKTMK 589 (600)
Q Consensus 581 r~~A~~~L~ 589 (600)
.-.+-.+|.
T Consensus 629 v~~vc~tl~ 637 (717)
T KOG1048|consen 629 VRAVCHTLN 637 (717)
T ss_pred HHHHHHhHH
Confidence 444444443
No 14
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.65 E-value=9.8e-14 Score=140.74 Aligned_cols=261 Identities=16% Similarity=0.188 Sum_probs=205.2
Q ss_pred ccCchHHHhcccCCC---CccccchHHHHhhcCchhHHHHHhcCCHHHHHHhhC--CCCHHHHHHHHHHHHHhh-CCcch
Q 007520 307 TKDYISKGSSRFGAP---MSLQKSNPSRELSGQRATIAKICDEVGLPKILQLLT--SEDPDVQIHAVKVVANLA-AEDIN 380 (600)
Q Consensus 307 ~~g~i~~Lv~~L~s~---~~~~r~~a~~~L~~~~~~~~~i~e~GgV~~Lv~LL~--s~~~~vr~~Aa~aL~nLa-~~~~~ 380 (600)
..|..+.++..+... .......++.+++..-.....++...|...++.+|. +++.++--....++..-+ .++.|
T Consensus 102 ~~ga~~~~it~~~la~~~~~~~l~ksL~al~~lt~~qpdl~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~n 181 (461)
T KOG4199|consen 102 KNGAHDALITLLELAESPNESVLKKSLEAINSLTHKQPDLFDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACIMHEVN 181 (461)
T ss_pred cCCCcchhhhHHHHhhCCchhHHHHHHHHHHHhhcCCcchhccccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHH
Confidence 455666665555432 222222333334444444456778999999998884 667778777777777655 48999
Q ss_pred HHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcCCcc----------HHHHHHhCchhhhHhhhccCCCHHHHHH
Q 007520 381 QEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMNEMN----------QGLIMSRGGGQLLAKTASKTDDPQTLRM 450 (600)
Q Consensus 381 ~~~iv~~G~I~~Lv~lL~~~~~~~v~~~Al~aL~NLa~~~~~----------r~~I~~~G~I~~Lv~lL~~~~~~~v~~~ 450 (600)
|..|++.++++.+...|.......+.+.++++++-|...++. .+.|+..|++..|++.+.-.-+|.+...
T Consensus 182 rQ~~m~~~il~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~ 261 (461)
T KOG4199|consen 182 RQLFMELKILELILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVS 261 (461)
T ss_pred HHHHHHhhHHHHHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHH
Confidence 999999999998887765433345777799999999887664 5677888889999999987788999999
Q ss_pred HHHHHHHHhCCchhHHHHHHcChHHHHHHHHcC-CCHHHH---HHHHHHHHHhhcCCchhhhhcchhhHHHHHhCCcHHH
Q 007520 451 VAGALANLCGNEKLHTMLEEDGAIKALLAMVRS-GNIDVI---AQVARGLANFAKCESRAIVQGQRKGRSHLMEDSALEW 526 (600)
Q Consensus 451 Aa~aL~nLa~~~e~r~~i~~~G~i~~Lv~lL~s-~~~~v~---~~A~~aL~nLa~~~~~~~~q~~~~~r~~l~e~g~l~~ 526 (600)
++.+|..|+..++++..+.+.||+..|+.++.+ ++...+ ..++.+|+.|+..+ ..++.+++.||.+.
T Consensus 262 l~~tl~~lAVr~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~D---------svKs~IV~~gg~~~ 332 (461)
T KOG4199|consen 262 LSTTLKALAVRDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSD---------SVKSTIVEKGGLDK 332 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCC---------chHHHHHHhcChHH
Confidence 999999999999999999999999999999975 444444 66899999999664 67889999999999
Q ss_pred HHHhh--cCCCHHHHHHHHHHHHHhhc-CchhHHHHHHcccHHHHHHhhhcCC
Q 007520 527 LIANS--KTNSASTRRHVELALCHLAQ-NEDNARDFISRGGAKELVQISIESS 576 (600)
Q Consensus 527 Lv~Ll--~s~~~~v~~~Aa~aL~nLa~-~~~~~~~lv~~G~l~~Lv~ll~~~~ 576 (600)
|+.++ ++++|.|...++.+++.||. .|++...+++.|+-...++.++.-.
T Consensus 333 ii~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP 385 (461)
T KOG4199|consen 333 IITLALRHSDDPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHP 385 (461)
T ss_pred HHHHHHHcCCChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCc
Confidence 99974 45789999999999999985 7889999999999888888887644
No 15
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.61 E-value=4.2e-15 Score=170.76 Aligned_cols=212 Identities=20% Similarity=0.244 Sum_probs=185.4
Q ss_pred hcCchhHHHHHhc-CCHHHHHHhhCCCCHHHHHHHHHHHHHhhC-Ccch-HHHHHHcCCHHHHHHHHccCCCHHHHHHHH
Q 007520 334 SGQRATIAKICDE-VGLPKILQLLTSEDPDVQIHAVKVVANLAA-EDIN-QEKIVEEGGLDALLLLLRTSQNTTILRVAS 410 (600)
Q Consensus 334 ~~~~~~~~~i~e~-GgV~~Lv~LL~s~~~~vr~~Aa~aL~nLa~-~~~~-~~~iv~~G~I~~Lv~lL~~~~~~~v~~~Al 410 (600)
+++..+++.+|.. |.+..+|..|.+...++....+.+|.||+| -+.| +..+-+.|-+..|+.+.-....+......+
T Consensus 380 FGDv~NKa~LCs~rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavL 459 (2195)
T KOG2122|consen 380 FGDVANKATLCSQRGFMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKKESTLKAVL 459 (2195)
T ss_pred cccccchhhhhhhhhHHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcccchHHHHH
Confidence 4577788888876 558999999999999999999999999999 4445 666668899999988755466667788899
Q ss_pred HHHHHhhcC-CccHHHHHH-hCchhhhHhhhccC---CCHHHHHHHHHHHHHHh----CCchhHHHHHHcChHHHHHHHH
Q 007520 411 GAIANLAMN-EMNQGLIMS-RGGGQLLAKTASKT---DDPQTLRMVAGALANLC----GNEKLHTMLEEDGAIKALLAMV 481 (600)
Q Consensus 411 ~aL~NLa~~-~~~r~~I~~-~G~I~~Lv~lL~~~---~~~~v~~~Aa~aL~nLa----~~~e~r~~i~~~G~i~~Lv~lL 481 (600)
.|||||+.+ .+|+..|+. .|++.+|+.+|... ..-.+++.+.++|+|++ ..+++|+.+.++.++..|++.|
T Consensus 460 SALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~L 539 (2195)
T KOG2122|consen 460 SALWNLSAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHL 539 (2195)
T ss_pred HHHhhhhhcccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHh
Confidence 999999998 999999999 89999999999652 34468889999999986 5688999999999999999999
Q ss_pred cCCCHHHHHHHHHHHHHhhcCCchhhhhcchhhHHHHHhCCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCc
Q 007520 482 RSGNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSKTNSASTRRHVELALCHLAQNE 553 (600)
Q Consensus 482 ~s~~~~v~~~A~~aL~nLa~~~~~~~~q~~~~~r~~l~e~g~l~~Lv~Ll~s~~~~v~~~Aa~aL~nLa~~~ 553 (600)
++.+-.+..++|++||||+..+ +..++.+++.|+++.|..++++.+..+-+.++.+|.||....
T Consensus 540 KS~SLTiVSNaCGTLWNLSAR~--------p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~R 603 (2195)
T KOG2122|consen 540 KSHSLTIVSNACGTLWNLSARS--------PEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNFR 603 (2195)
T ss_pred hhcceEEeecchhhhhhhhcCC--------HHHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcCC
Confidence 9999999999999999999887 567889999999999999999999999999999999996554
No 16
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.51 E-value=9.3e-13 Score=133.63 Aligned_cols=195 Identities=26% Similarity=0.273 Sum_probs=169.5
Q ss_pred HHhcCCHHHHHHhhC-CCCHHHHHHHHHHHHHhhCCcchHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcCCc
Q 007520 343 ICDEVGLPKILQLLT-SEDPDVQIHAVKVVANLAAEDINQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMNEM 421 (600)
Q Consensus 343 i~e~GgV~~Lv~LL~-s~~~~vr~~Aa~aL~nLa~~~~~~~~iv~~G~I~~Lv~lL~~~~~~~v~~~Al~aL~NLa~~~~ 421 (600)
+.+.+.++.|+.+|. +.++.+++.|..+++|.+.++.++..|.+.||++.+..+|. ++++.++..|+++|.||+.+.+
T Consensus 8 ~l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~-~p~~~vr~~AL~aL~Nls~~~e 86 (254)
T PF04826_consen 8 ILEAQELQKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLN-DPNPSVREKALNALNNLSVNDE 86 (254)
T ss_pred CcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcC-CCChHHHHHHHHHHHhcCCChh
Confidence 356778999999997 67899999999999999999999999999999999999999 7899999999999999999999
Q ss_pred cHHHHHHhCchhhhHhhh-ccCCCHHHHHHHHHHHHHHhCCchhHHHHHHcChHHHHHHHHcCCCHHHHHHHHHHHHHhh
Q 007520 422 NQGLIMSRGGGQLLAKTA-SKTDDPQTLRMVAGALANLCGNEKLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFA 500 (600)
Q Consensus 422 ~r~~I~~~G~I~~Lv~lL-~~~~~~~v~~~Aa~aL~nLa~~~e~r~~i~~~G~i~~Lv~lL~s~~~~v~~~A~~aL~nLa 500 (600)
++..|-. .++.++... ..+.++.++..++.+|.||+..++.+..+.. .++.++.+|.+++..++..++++|.||+
T Consensus 87 n~~~Ik~--~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~~--~i~~ll~LL~~G~~~~k~~vLk~L~nLS 162 (254)
T PF04826_consen 87 NQEQIKM--YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLAN--YIPDLLSLLSSGSEKTKVQVLKVLVNLS 162 (254)
T ss_pred hHHHHHH--HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHHh--hHHHHHHHHHcCChHHHHHHHHHHHHhc
Confidence 9998754 577776644 3345678999999999999988888777754 7999999999999999999999999999
Q ss_pred cCCchhhhhcchhhHHHHHhCCcHHHHHHhhcCC-CHHHHHHHHHHHHHhhc
Q 007520 501 KCESRAIVQGQRKGRSHLMEDSALEWLIANSKTN-SASTRRHVELALCHLAQ 551 (600)
Q Consensus 501 ~~~~~~~~q~~~~~r~~l~e~g~l~~Lv~Ll~s~-~~~v~~~Aa~aL~nLa~ 551 (600)
.. +.....++..+++..++.+++.. +..+...+.+.+.|+..
T Consensus 163 ~n---------p~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~ 205 (254)
T PF04826_consen 163 EN---------PDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINE 205 (254)
T ss_pred cC---------HHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHH
Confidence 55 45555677888999999998875 78899999999999954
No 17
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.47 E-value=1.7e-12 Score=131.66 Aligned_cols=182 Identities=23% Similarity=0.234 Sum_probs=159.1
Q ss_pred HHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcCCccHHHHHHhCchhhhHhhhccCCCHHHHHHHHHHHHHHhCCch
Q 007520 384 IVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMNEMNQGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLCGNEK 463 (600)
Q Consensus 384 iv~~G~I~~Lv~lL~~~~~~~v~~~Al~aL~NLa~~~~~r~~I~~~G~I~~Lv~lL~~~~~~~v~~~Aa~aL~nLa~~~e 463 (600)
+.+.+.++.|+.+|....|+.+++.++.++.|.+..+.++..|.+.||++.+..+|.+ +++.++..|+++|.||+.+.+
T Consensus 8 ~l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~-p~~~vr~~AL~aL~Nls~~~e 86 (254)
T PF04826_consen 8 ILEAQELQKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLND-PNPSVREKALNALNNLSVNDE 86 (254)
T ss_pred CcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCC-CChHHHHHHHHHHHhcCCChh
Confidence 4566778999999998889999999999999999999999999999999999999954 889999999999999999999
Q ss_pred hHHHHHHcChHHHHHHHHc--CCCHHHHHHHHHHHHHhhcCCchhhhhcchhhHHHHHhCCcHHHHHHhhcCCCHHHHHH
Q 007520 464 LHTMLEEDGAIKALLAMVR--SGNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSKTNSASTRRH 541 (600)
Q Consensus 464 ~r~~i~~~G~i~~Lv~lL~--s~~~~v~~~A~~aL~nLa~~~~~~~~q~~~~~r~~l~e~g~l~~Lv~Ll~s~~~~v~~~ 541 (600)
++..+.. .++.++.... ..+..++..++++|.||+..+ .++..+. +.++.++.++..++..++..
T Consensus 87 n~~~Ik~--~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~---------~~~~~l~--~~i~~ll~LL~~G~~~~k~~ 153 (254)
T PF04826_consen 87 NQEQIKM--YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTN---------DYHHMLA--NYIPDLLSLLSSGSEKTKVQ 153 (254)
T ss_pred hHHHHHH--HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCc---------chhhhHH--hhHHHHHHHHHcCChHHHHH
Confidence 9887754 5677777553 347789999999999998663 3444453 47999999999999999999
Q ss_pred HHHHHHHhhcCchhHHHHHHcccHHHHHHhhhcCChHH
Q 007520 542 VELALCHLAQNEDNARDFISRGGAKELVQISIESSRED 579 (600)
Q Consensus 542 Aa~aL~nLa~~~~~~~~lv~~G~l~~Lv~ll~~~~~~~ 579 (600)
+..+|.||+.++...+.++..+++..|+.+...+.+.+
T Consensus 154 vLk~L~nLS~np~~~~~Ll~~q~~~~~~~Lf~~~~~~~ 191 (254)
T PF04826_consen 154 VLKVLVNLSENPDMTRELLSAQVLSSFLSLFNSSESKE 191 (254)
T ss_pred HHHHHHHhccCHHHHHHHHhccchhHHHHHHccCCccH
Confidence 99999999999999999999999999999998775554
No 18
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.40 E-value=2.6e-12 Score=143.34 Aligned_cols=194 Identities=25% Similarity=0.377 Sum_probs=165.4
Q ss_pred CHHHHHHhhCCCCHHHHHHHHHHHHHhhC-CcchHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcC---CccH
Q 007520 348 GLPKILQLLTSEDPDVQIHAVKVVANLAA-EDINQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMN---EMNQ 423 (600)
Q Consensus 348 gV~~Lv~LL~s~~~~vr~~Aa~aL~nLa~-~~~~~~~iv~~G~I~~Lv~lL~~~~~~~v~~~Al~aL~NLa~~---~~~r 423 (600)
-+|..+.+|.+.++.++..|+.-|..++. +...+..+.+.|||+.||.+|. +++.+++..||+||.||... ++|+
T Consensus 234 ~lpe~i~mL~~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~-~~~~evq~~acgaLRNLvf~~~~~~NK 312 (717)
T KOG1048|consen 234 TLPEVISMLMSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLD-HRNDEVQRQACGALRNLVFGKSTDSNK 312 (717)
T ss_pred ccHHHHHHHhccChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhc-CCcHHHHHHHHHHHHhhhcccCCcccc
Confidence 47888999999999999999999999998 7777889999999999999999 77899999999999999976 4699
Q ss_pred HHHHHhCchhhhHhhhccCCCHHHHHHHHHHHHHHhCCchhHHHHHHcChHHHHHHHHc---C-------C----CHHHH
Q 007520 424 GLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLCGNEKLHTMLEEDGAIKALLAMVR---S-------G----NIDVI 489 (600)
Q Consensus 424 ~~I~~~G~I~~Lv~lL~~~~~~~v~~~Aa~aL~nLa~~~e~r~~i~~~G~i~~Lv~lL~---s-------~----~~~v~ 489 (600)
-.|.+.+||+.++.+|....|.++++.++++||||+.++.++..|+.+. +..|..-+- + + +..+.
T Consensus 313 lai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~lK~~ii~~a-l~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf 391 (717)
T KOG1048|consen 313 LAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSNDALKMLIITSA-LSTLTDNVIIPHSGWEEEPAPRKAEDSTVF 391 (717)
T ss_pred hhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchhHHHHHHHHHH-HHHHHHhhcccccccCCCCcccccccceee
Confidence 9999999999999999887888999999999999999988888877654 444444331 1 1 25678
Q ss_pred HHHHHHHHHhhcCCchhhhhcchhhHHHHHh-CCcHHHHHHhhcC------CCHHHHHHHHHHHHHhhc
Q 007520 490 AQVARGLANFAKCESRAIVQGQRKGRSHLME-DSALEWLIANSKT------NSASTRRHVELALCHLAQ 551 (600)
Q Consensus 490 ~~A~~aL~nLa~~~~~~~~q~~~~~r~~l~e-~g~l~~Lv~Ll~s------~~~~v~~~Aa~aL~nLa~ 551 (600)
.++.++|+|+++.. ...|+.|.+ .|.|..|+..+++ .|....++++.+|+||+-
T Consensus 392 ~n~tgcLRNlSs~~--------~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSY 452 (717)
T KOG1048|consen 392 RNVTGCLRNLSSAG--------QEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSY 452 (717)
T ss_pred ehhhhhhccccchh--------HHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCc
Confidence 89999999998754 567888988 6899999998763 467788899999999964
No 19
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.31 E-value=4.4e-11 Score=105.92 Aligned_cols=118 Identities=22% Similarity=0.293 Sum_probs=106.6
Q ss_pred HHHHhCchhhhHhhhccCCCHHHHHHHHHHHHHHhCC-chhHHHHHHcChHHHHHHHHcCCCHHHHHHHHHHHHHhhcCC
Q 007520 425 LIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLCGN-EKLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFAKCE 503 (600)
Q Consensus 425 ~I~~~G~I~~Lv~lL~~~~~~~v~~~Aa~aL~nLa~~-~e~r~~i~~~G~i~~Lv~lL~s~~~~v~~~A~~aL~nLa~~~ 503 (600)
.+++.|+++.|+.+|.+ +++.++..++++|++++.+ ++....+.+.|+++.++.+|.++++.++..|+++|+||+...
T Consensus 2 ~~~~~~~i~~l~~~l~~-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~ 80 (120)
T cd00020 2 AVIQAGGLPALVSLLSS-SDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGP 80 (120)
T ss_pred hHHHcCChHHHHHHHHc-CCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCc
Confidence 46788999999999965 6689999999999999977 888899999999999999999999999999999999999764
Q ss_pred chhhhhcchhhHHHHHhCCcHHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 007520 504 SRAIVQGQRKGRSHLMEDSALEWLIANSKTNSASTRRHVELALCHLAQ 551 (600)
Q Consensus 504 ~~~~~q~~~~~r~~l~e~g~l~~Lv~Ll~s~~~~v~~~Aa~aL~nLa~ 551 (600)
+..+..+...|+++.|+.++.+++..++..++++|++|+.
T Consensus 81 --------~~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 81 --------EDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120 (120)
T ss_pred --------HHHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence 3456678889999999999999999999999999999973
No 20
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.29 E-value=4.8e-10 Score=118.49 Aligned_cols=261 Identities=15% Similarity=0.151 Sum_probs=197.5
Q ss_pred ccCchHHHhcccCCCCccccchHHHH---hhcCchhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCcchHHH
Q 007520 307 TKDYISKGSSRFGAPMSLQKSNPSRE---LSGQRATIAKICDEVGLPKILQLLTSEDPDVQIHAVKVVANLAAEDINQEK 383 (600)
Q Consensus 307 ~~g~i~~Lv~~L~s~~~~~r~~a~~~---L~~~~~~~~~i~e~GgV~~Lv~LL~s~~~~vr~~Aa~aL~nLa~~~~~~~~ 383 (600)
....+..||..++..+...-.....- ++...+++..+.+.|.|.+|+.++.+..++++......|.|++.+.+.+.+
T Consensus 302 rkniV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf~eNK~~M~~~~iveKL~klfp~~h~dL~~~tl~LlfNlSFD~glr~K 381 (791)
T KOG1222|consen 302 RKNIVAMLVKALDRSNSSLLTLVIKFLKKLSIFDENKIVMEQNGIVEKLLKLFPIQHPDLRKATLMLLFNLSFDSGLRPK 381 (791)
T ss_pred HHhHHHHHHHHHcccchHHHHHHHHHHHHhhhhccchHHHHhccHHHHHHHhcCCCCHHHHHHHHHHhhhccccccccHH
Confidence 45567778888877654333333222 667788888888999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcCCccHHHHHHhCchhhhHhhhccCCCHHHHHHHHHHHHHHhCCch
Q 007520 384 IVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMNEMNQGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLCGNEK 463 (600)
Q Consensus 384 iv~~G~I~~Lv~lL~~~~~~~v~~~Al~aL~NLa~~~~~r~~I~~~G~I~~Lv~lL~~~~~~~v~~~Aa~aL~nLa~~~e 463 (600)
++..|.+|.|+.+|.++. -...|+..|..++.+++.+..+.-..+|+.+...+..+.+..+-...+..-.|||.+..
T Consensus 382 Mv~~GllP~l~~ll~~d~---~~~iA~~~lYh~S~dD~~K~MfayTdci~~lmk~v~~~~~~~vdl~lia~ciNl~lnkR 458 (791)
T KOG1222|consen 382 MVNGGLLPHLASLLDSDT---KHGIALNMLYHLSCDDDAKAMFAYTDCIKLLMKDVLSGTGSEVDLALIALCINLCLNKR 458 (791)
T ss_pred HhhccchHHHHHHhCCcc---cchhhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHhccc
Confidence 999999999999998432 34568889999999999999999999999999887665665665555555567775544
Q ss_pred hHHHHHHcChHH-------------------------------------HHHHHHc-CCCHHHHHHHHHHHHHhhcCCch
Q 007520 464 LHTMLEEDGAIK-------------------------------------ALLAMVR-SGNIDVIAQVARGLANFAKCESR 505 (600)
Q Consensus 464 ~r~~i~~~G~i~-------------------------------------~Lv~lL~-s~~~~v~~~A~~aL~nLa~~~~~ 505 (600)
+.+.+.+..++. .|.+.+. +.+......|+++|+||+..+..
T Consensus 459 NaQlvceGqgL~~LM~ra~k~~D~lLmK~vRniSqHeg~tqn~FidyvgdLa~i~~nd~~E~F~~EClGtlanL~v~dld 538 (791)
T KOG1222|consen 459 NAQLVCEGQGLDLLMERAIKSRDLLLMKVVRNISQHEGATQNMFIDYVGDLAGIAKNDNSESFGLECLGTLANLKVTDLD 538 (791)
T ss_pred cceEEecCcchHHHHHHHhcccchHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHhhcccCCCC
Confidence 433333322222 2333332 33444566788888998876533
Q ss_pred hhhhcchhhHHHHHhCCcHHHHHHhhcCC--CHHHHHHHHHHHHHhhcCchhHHHHHHcccHHHHHHhhhcCChH
Q 007520 506 AIVQGQRKGRSHLMEDSALEWLIANSKTN--SASTRRHVELALCHLAQNEDNARDFISRGGAKELVQISIESSRE 578 (600)
Q Consensus 506 ~~~q~~~~~r~~l~e~g~l~~Lv~Ll~s~--~~~v~~~Aa~aL~nLa~~~~~~~~lv~~G~l~~Lv~ll~~~~~~ 578 (600)
...++.....+||+-..+..+ ...++...+.++.-++.+..++.-+..+|.++.|+++++++...
T Consensus 539 --------w~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~d~~cA~Lla~a~~i~tlieLL~a~QeD 605 (791)
T KOG1222|consen 539 --------WAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMARDLDCARLLAPAKLIDTLIELLQACQED 605 (791)
T ss_pred --------HHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhhhhHHHHHhCccccHHHHHHHHHhhccc
Confidence 344577789999999988765 35577788888888899998988888999999999999987543
No 21
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.27 E-value=6.4e-11 Score=104.87 Aligned_cols=116 Identities=33% Similarity=0.482 Sum_probs=105.2
Q ss_pred HHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCC-cchHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcCC
Q 007520 342 KICDEVGLPKILQLLTSEDPDVQIHAVKVVANLAAE-DINQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMNE 420 (600)
Q Consensus 342 ~i~e~GgV~~Lv~LL~s~~~~vr~~Aa~aL~nLa~~-~~~~~~iv~~G~I~~Lv~lL~~~~~~~v~~~Al~aL~NLa~~~ 420 (600)
.+++.|+++.|+.+|.++++.++..|+.+|++++.+ +.....+++.|+++.++.+|. ++++.++..|+++|+||+.++
T Consensus 2 ~~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~-~~~~~v~~~a~~~L~~l~~~~ 80 (120)
T cd00020 2 AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLK-SEDEEVVKAALWALRNLAAGP 80 (120)
T ss_pred hHHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHh-CCCHHHHHHHHHHHHHHccCc
Confidence 467899999999999999999999999999999985 888889999999999999999 568899999999999999984
Q ss_pred -ccHHHHHHhCchhhhHhhhccCCCHHHHHHHHHHHHHHh
Q 007520 421 -MNQGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLC 459 (600)
Q Consensus 421 -~~r~~I~~~G~I~~Lv~lL~~~~~~~v~~~Aa~aL~nLa 459 (600)
..+..+...|+++.|+.++.. .+..++..++++|+||+
T Consensus 81 ~~~~~~~~~~g~l~~l~~~l~~-~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 81 EDNKLIVLEAGGVPKLVNLLDS-SNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHHHHHHHCCChHHHHHHHhc-CCHHHHHHHHHHHHHhh
Confidence 567777889999999999964 67899999999999987
No 22
>PRK09687 putative lyase; Provisional
Probab=99.13 E-value=4.2e-09 Score=108.88 Aligned_cols=241 Identities=15% Similarity=0.053 Sum_probs=148.0
Q ss_pred cccCchHHHhcccCCCCccccchHHHHhhcCchhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCcchHHHHH
Q 007520 306 YTKDYISKGSSRFGAPMSLQKSNPSRELSGQRATIAKICDEVGLPKILQLLTSEDPDVQIHAVKVVANLAAEDINQEKIV 385 (600)
Q Consensus 306 ~~~g~i~~Lv~~L~s~~~~~r~~a~~~L~~~~~~~~~i~e~GgV~~Lv~LL~s~~~~vr~~Aa~aL~nLa~~~~~~~~iv 385 (600)
|..-.++.|...+.+....++..++..|..-. ....++.+..++.++++.+|..|+++|+.+-..+..
T Consensus 20 ~~~~~~~~L~~~L~d~d~~vR~~A~~aL~~~~-------~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~----- 87 (280)
T PRK09687 20 CKKLNDDELFRLLDDHNSLKRISSIRVLQLRG-------GQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC----- 87 (280)
T ss_pred HhhccHHHHHHHHhCCCHHHHHHHHHHHHhcC-------cchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc-----
Confidence 34445667777777777777776666542211 122356677888888889999999888887653221
Q ss_pred HcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcCCccHHHHHHhCchhhhHhhhccCCCHHHHHHHHHHHHHHhCCchhH
Q 007520 386 EEGGLDALLLLLRTSQNTTILRVASGAIANLAMNEMNQGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLCGNEKLH 465 (600)
Q Consensus 386 ~~G~I~~Lv~lL~~~~~~~v~~~Al~aL~NLa~~~~~r~~I~~~G~I~~Lv~lL~~~~~~~v~~~Aa~aL~nLa~~~e~r 465 (600)
....++.|..++..++++.|+..|+.+|.+++...... ...++..+...+.+ +++.|+..++++|..+.
T Consensus 88 ~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~----~~~a~~~l~~~~~D-~~~~VR~~a~~aLg~~~------ 156 (280)
T PRK09687 88 QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY----SPKIVEQSQITAFD-KSTNVRFAVAFALSVIN------ 156 (280)
T ss_pred hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc----chHHHHHHHHHhhC-CCHHHHHHHHHHHhccC------
Confidence 11246667766555778888888888888886442211 11133445555533 56778888888876442
Q ss_pred HHHHHcChHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchhhhhcchhhHHHHHhCCcHHHHHHhhcCCCHHHHHHHHHH
Q 007520 466 TMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSKTNSASTRRHVELA 545 (600)
Q Consensus 466 ~~i~~~G~i~~Lv~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~q~~~~~r~~l~e~g~l~~Lv~Ll~s~~~~v~~~Aa~a 545 (600)
+..+++.|+.+|.++++.|+..|+.+|+.+...++ .+++.|+.++.+.+..|+..|+++
T Consensus 157 ----~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~-----------------~~~~~L~~~L~D~~~~VR~~A~~a 215 (280)
T PRK09687 157 ----DEAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNP-----------------DIREAFVAMLQDKNEEIRIEAIIG 215 (280)
T ss_pred ----CHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCH-----------------HHHHHHHHHhcCCChHHHHHHHHH
Confidence 22367777888877777888888888887742221 355556666666666666666666
Q ss_pred HHHhhc------------CchhHHHHH-------HcccHHHHHHhhhcCChHHHHHHHHHHHhc
Q 007520 546 LCHLAQ------------NEDNARDFI-------SRGGAKELVQISIESSREDIRNLAKKTMKS 590 (600)
Q Consensus 546 L~nLa~------------~~~~~~~lv-------~~G~l~~Lv~ll~~~~~~~ir~~A~~~L~~ 590 (600)
|..+-. ++..+...+ ...+++.|.+++.....+.++..|...|+.
T Consensus 216 Lg~~~~~~av~~Li~~L~~~~~~~~a~~ALg~ig~~~a~p~L~~l~~~~~d~~v~~~a~~a~~~ 279 (280)
T PRK09687 216 LALRKDKRVLSVLIKELKKGTVGDLIIEAAGELGDKTLLPVLDTLLYKFDDNEIITKAIDKLKR 279 (280)
T ss_pred HHccCChhHHHHHHHHHcCCchHHHHHHHHHhcCCHhHHHHHHHHHhhCCChhHHHHHHHHHhc
Confidence 653311 111111111 123678888888744556788888777764
No 23
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.11 E-value=1.1e-08 Score=114.26 Aligned_cols=273 Identities=15% Similarity=0.163 Sum_probs=205.8
Q ss_pred ccCchHHHhcccCCCCccccchHHHH---hhcCchh-HHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCcchHH
Q 007520 307 TKDYISKGSSRFGAPMSLQKSNPSRE---LSGQRAT-IAKICDEVGLPKILQLLTSEDPDVQIHAVKVVANLAAEDINQE 382 (600)
Q Consensus 307 ~~g~i~~Lv~~L~s~~~~~r~~a~~~---L~~~~~~-~~~i~e~GgV~~Lv~LL~s~~~~vr~~Aa~aL~nLa~~~~~~~ 382 (600)
..+..+.|...+.++.+.++..++.. +..+... ...+.+.+.++.++..+.+++..+...|+.+|.+++.++....
T Consensus 75 ~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~ 154 (503)
T PF10508_consen 75 LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLE 154 (503)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHH
Confidence 45667788889999999999888775 3334443 4556677788999999999999999999999999999888877
Q ss_pred HHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcC-CccHHHHHHhCchhhhHhhhccCCCHHHHHHHHHHHHHHhCC
Q 007520 383 KIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMN-EMNQGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLCGN 461 (600)
Q Consensus 383 ~iv~~G~I~~Lv~lL~~~~~~~v~~~Al~aL~NLa~~-~~~r~~I~~~G~I~~Lv~lL~~~~~~~v~~~Aa~aL~nLa~~ 461 (600)
.++..++++.|..++. ..+..++..+..++.+++.. ++....+...|.++.++..+.+ +|.-++.+++.+|..|+..
T Consensus 155 ~l~~~~~~~~L~~l~~-~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~-dDiLvqlnalell~~La~~ 232 (503)
T PF10508_consen 155 QLFDSNLLSKLKSLMS-QSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDS-DDILVQLNALELLSELAET 232 (503)
T ss_pred HHhCcchHHHHHHHHh-ccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcC-ccHHHHHHHHHHHHHHHcC
Confidence 8888888999999997 44667888899999999866 8888888889999999999965 8888999999999999999
Q ss_pred chhHHHHHHcChHHHHHHHHcC--CCH---HH-HHHHHHHHHHhhcCCchhhhhcchhhHHHHHhCCcHHHHHHhhcCCC
Q 007520 462 EKLHTMLEEDGAIKALLAMVRS--GNI---DV-IAQVARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSKTNS 535 (600)
Q Consensus 462 ~e~r~~i~~~G~i~~Lv~lL~s--~~~---~v-~~~A~~aL~nLa~~~~~~~~q~~~~~r~~l~e~g~l~~Lv~Ll~s~~ 535 (600)
+.+...+.+.|+++.|+.++.. .+| .+ .-......++++...|..... .. ...+..|..++.+.|
T Consensus 233 ~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~~v~~-------~~--p~~~~~l~~~~~s~d 303 (503)
T PF10508_consen 233 PHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQEVLE-------LY--PAFLERLFSMLESQD 303 (503)
T ss_pred hhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcChHHHHH-------HH--HHHHHHHHHHhCCCC
Confidence 9999999999999999999952 333 11 223346667776543221110 00 124445566778899
Q ss_pred HHHHHHHHHHHHHhhcCchhHHHH-HHc-ccHHH----HHHhhhcCChHHHHHHHHHHHhcC
Q 007520 536 ASTRRHVELALCHLAQNEDNARDF-ISR-GGAKE----LVQISIESSREDIRNLAKKTMKSN 591 (600)
Q Consensus 536 ~~v~~~Aa~aL~nLa~~~~~~~~l-v~~-G~l~~----Lv~ll~~~~~~~ir~~A~~~L~~~ 591 (600)
+..+..|..++..++...+.+..+ ... +.+.. ......++ +.+++..+.+.|.+.
T Consensus 304 ~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~-~~~lk~r~l~al~~i 364 (503)
T PF10508_consen 304 PTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSG-STELKLRALHALASI 364 (503)
T ss_pred hhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCC-chHHHHHHHHHHHHH
Confidence 999999999999999988887777 433 23333 33333332 345777777666554
No 24
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.10 E-value=8.9e-09 Score=115.06 Aligned_cols=215 Identities=13% Similarity=0.112 Sum_probs=182.2
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhhCCcchHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcCCcc-HHHHHH
Q 007520 350 PKILQLLTSEDPDVQIHAVKVVANLAAEDINQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMNEMN-QGLIMS 428 (600)
Q Consensus 350 ~~Lv~LL~s~~~~vr~~Aa~aL~nLa~~~~~~~~iv~~G~I~~Lv~lL~~~~~~~v~~~Al~aL~NLa~~~~~-r~~I~~ 428 (600)
+.++..|.+.+.+....++.+|..+......... ..+..+.|...|. ++++.++..++..|.+++.+.+. ...+.+
T Consensus 41 ~~lf~~L~~~~~e~v~~~~~iL~~~l~~~~~~~l--~~~~~~~L~~gL~-h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~ 117 (503)
T PF10508_consen 41 PVLFDCLNTSNREQVELICDILKRLLSALSPDSL--LPQYQPFLQRGLT-HPSPKVRRLALKQLGRIARHSEGAAQLLVD 117 (503)
T ss_pred HHHHHHHhhcChHHHHHHHHHHHHHHhccCHHHH--HHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHhcCCHHHHHHhcC
Confidence 3377888877888788888888887763333322 3345777888888 78899999999999999988554 555667
Q ss_pred hCchhhhHhhhccCCCHHHHHHHHHHHHHHhCCchhHHHHHHcChHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchhhh
Q 007520 429 RGGGQLLAKTASKTDDPQTLRMVAGALANLCGNEKLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFAKCESRAIV 508 (600)
Q Consensus 429 ~G~I~~Lv~lL~~~~~~~v~~~Aa~aL~nLa~~~e~r~~i~~~G~i~~Lv~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~ 508 (600)
.+.++.++.++.. ++..+...|+.+|.+|+..+.....+.+.+++..|..++...+..++.++..++.+++..+
T Consensus 118 ~~l~~~i~~~L~~-~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S----- 191 (503)
T PF10508_consen 118 NELLPLIIQCLRD-PDLSVAKAAIKALKKLASHPEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHS----- 191 (503)
T ss_pred ccHHHHHHHHHcC-CcHHHHHHHHHHHHHHhCCchhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcC-----
Confidence 8999999999954 7889999999999999999888888889899999999998888899999999999999776
Q ss_pred hcchhhHHHHHhCCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCchhHHHHHHcccHHHHHHhhhcCC
Q 007520 509 QGQRKGRSHLMEDSALEWLIANSKTNSASTRRHVELALCHLAQNEDNARDFISRGGAKELVQISIESS 576 (600)
Q Consensus 509 q~~~~~r~~l~e~g~l~~Lv~Ll~s~~~~v~~~Aa~aL~nLa~~~~~~~~lv~~G~l~~Lv~ll~~~~ 576 (600)
+.....+...|.++.++..+.++|.-++.+++.+|..|+..+.+...+.+.|+++.|..++..+.
T Consensus 192 ---~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~~g~~yL~~~gi~~~L~~~l~~~~ 256 (503)
T PF10508_consen 192 ---PEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAETPHGLQYLEQQGIFDKLSNLLQDSE 256 (503)
T ss_pred ---HHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChhHHHHHHhCCHHHHHHHHHhccc
Confidence 45666788899999999999999999999999999999999999999999999999999997653
No 25
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=99.07 E-value=4.1e-09 Score=110.43 Aligned_cols=264 Identities=15% Similarity=0.136 Sum_probs=189.0
Q ss_pred cccCchHHHhcccCCCCccccc---hHHHH-hhcCchhHHHHHhcCCHHHHHHhhCC---C----CHHHHHHHHHHHHHh
Q 007520 306 YTKDYISKGSSRFGAPMSLQKS---NPSRE-LSGQRATIAKICDEVGLPKILQLLTS---E----DPDVQIHAVKVVANL 374 (600)
Q Consensus 306 ~~~g~i~~Lv~~L~s~~~~~r~---~a~~~-L~~~~~~~~~i~e~GgV~~Lv~LL~s---~----~~~vr~~Aa~aL~nL 374 (600)
+++|.+..|.....|++..... .++++ +..+++++..+++.||-+.++.+|+. . +......+++.|.|.
T Consensus 84 I~a~~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny 163 (604)
T KOG4500|consen 84 IDAEALELLRQTPSSPDTEVHEQCFRALGNICYDNNENRAAFFNLGGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNY 163 (604)
T ss_pred hHHHHHHHHHhCCCCCcccHHHHHHHHHhhhhccCchhHHHHHhcCCceehHhhhccccccCCccHHHHHHHHHHHHHHh
Confidence 5667777777777777444433 44555 45588899999999998888877752 2 246677788889997
Q ss_pred hC-CcchHHHHHHcCCHHHHHHHHccC-CC--------------------------------------------HHHHHH
Q 007520 375 AA-EDINQEKIVEEGGLDALLLLLRTS-QN--------------------------------------------TTILRV 408 (600)
Q Consensus 375 a~-~~~~~~~iv~~G~I~~Lv~lL~~~-~~--------------------------------------------~~v~~~ 408 (600)
.- +++.+..+++.|+++.|..++--+ .+ +.+.+.
T Consensus 164 ~l~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM 243 (604)
T KOG4500|consen 164 ILDSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYPFCKDCSLVFMLLQLLPSMVREDIDEM 243 (604)
T ss_pred hCCcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhhhhhccchHHHHHHHHHHHhhccchhhH
Confidence 76 677799999999998776554311 11 123334
Q ss_pred HHHHHHHhhcCCccHHHHHHhCchhhhHhhhccCCCH-------HHHHHHHHHHHHHh-CCchhHHHHHHcChHHHHHHH
Q 007520 409 ASGAIANLAMNEMNQGLIMSRGGGQLLAKTASKTDDP-------QTLRMVAGALANLC-GNEKLHTMLEEDGAIKALLAM 480 (600)
Q Consensus 409 Al~aL~NLa~~~~~r~~I~~~G~I~~Lv~lL~~~~~~-------~v~~~Aa~aL~nLa-~~~e~r~~i~~~G~i~~Lv~l 480 (600)
+...|...+.++..+-.+++.|.+..++.++....+. .....++....-|. +++..+..+.+...+..++++
T Consensus 244 ~feila~~aend~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDeSMq~L~~~p~~l~~~~sw 323 (604)
T KOG4500|consen 244 IFEILAKAAENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDESMQKLHADPQFLDFLESW 323 (604)
T ss_pred HHHHHHHHhcCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCchHHHHHhcCcHHHHHHHHH
Confidence 4555666666666777777788888887777552211 12233444333333 555555444444488999999
Q ss_pred HcCCCHHHHHHHHHHHHHhhcCCchhhhhcchhhHHHHHhCCcHHHHHHhhcC-----CCHHHHHHHHHHHHHhhcCchh
Q 007520 481 VRSGNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSKT-----NSASTRRHVELALCHLAQNEDN 555 (600)
Q Consensus 481 L~s~~~~v~~~A~~aL~nLa~~~~~~~~q~~~~~r~~l~e~g~l~~Lv~Ll~s-----~~~~v~~~Aa~aL~nLa~~~~~ 555 (600)
+++.|......+.-+++|++..++. .-.|++.|.+..|+..+.. ++..+++.++.||+|++-...+
T Consensus 324 ~~S~d~~l~t~g~LaigNfaR~D~~---------ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~n 394 (604)
T KOG4500|consen 324 FRSDDSNLITMGSLAIGNFARRDDI---------CIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPVSN 394 (604)
T ss_pred hcCCchhHHHHHHHHHHhhhccchH---------HHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccCCc
Confidence 9999999999999999999987643 3348888999999986543 5788999999999999999999
Q ss_pred HHHHHHcccHHHHHHhhhcCChH
Q 007520 556 ARDFISRGGAKELVQISIESSRE 578 (600)
Q Consensus 556 ~~~lv~~G~l~~Lv~ll~~~~~~ 578 (600)
+..++.+|..+.++-.+...++|
T Consensus 395 ka~~~~aGvteaIL~~lk~~~pp 417 (604)
T KOG4500|consen 395 KAHFAPAGVTEAILLQLKLASPP 417 (604)
T ss_pred hhhccccchHHHHHHHHHhcCCc
Confidence 99999999999998888766654
No 26
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=99.01 E-value=2.6e-08 Score=107.82 Aligned_cols=201 Identities=24% Similarity=0.178 Sum_probs=146.4
Q ss_pred CcccchhhhhhhhchHHHhHHHHHHHHHHhHHHHHHHHhhhccH--HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 007520 1 MKVVNMVKLKEEFDYESLCRKLETQVDHLTAEIERKQKLRENDK--CELEKLLRECQISYDEAKDNLVTQVELLTAKIEM 78 (600)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (600)
|.|.|||.+++||+|+..||+++++.|++++..++.++.+++.+ +.-|....+++..+.+..+.-+
T Consensus 329 k~ikN~v~~n~e~~~e~~~r~~e~~kd~~~~~~~~~~~~~~sl~~~~~~E~~~~de~~~~~~~~k~~~------------ 396 (607)
T KOG0240|consen 329 KTIKNTVWVNLELTAEEWKRKLEKKKDKNVALKEELEKLRNSLKRWRNGEEVKEDEDFSLKEEAKMSA------------ 396 (607)
T ss_pred ccccchhhhhhHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhcccCcccchhhhhHHHHHHhhh------------
Confidence 57899999999999999999999999999999999999997555 5566677778888777776333
Q ss_pred HHHhhhchhHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHhhhHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHhhhhhh
Q 007520 79 QQKLRENDKYEFEKQLRESQISYDESMRNLVTRSEFLEKENAHLELEVEKILGELNHQKDQNNLKREKIVQLEISLKNSK 158 (600)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (600)
.-.+ -..++.++..- ...++..+..++. .|.||.+..+.+..+..+|..+|++-.
T Consensus 397 -----------~~~~-------~~~~i~~~~~~---~~~~~~~~~e~~~----~L~qqlD~kd~~~n~~sqL~~~lk~q~ 451 (607)
T KOG0240|consen 397 -----------ILSE-------EEMSITKLKGS---LEEEEDILTERIE----SLYQQLDQKDDQINKQSQLMEKLKEQL 451 (607)
T ss_pred -----------hhhh-------hhhhhhhcccc---hHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000 00111111110 1222223333333 468888999999999999999999999
Q ss_pred hhhhhhhHHhhhhhhhhhhhHHHHHHHHHHhHhHHHhhhhhHHHHHHHHHHHhhhhhcccc---hhhHHHHHHHHHHHHH
Q 007520 159 QYEMENSTYQKALADTTQLYEKKIAELNKKLEDEHACFEGAVEQLDMVKKLLSDYQNSNQG---QKEVHELCVKLKETRQ 235 (600)
Q Consensus 159 ~~~~~n~~~~~~l~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~~~~~~~~~~~q~~~~~---~~e~~~l~~~~~d~~~ 235 (600)
..+.|+..+.+.+.+..|.+...+.++..--++|-.....|.+++.+.....+.-+.++.. .+|++++++..+.-..
T Consensus 452 ~~qee~~s~~~~~~e~~q~e~~~~Q~~~e~~~~e~~e~~~al~el~~~~~~~~~~~~~~~~~n~~sel~sl~~~~~~~~~ 531 (607)
T KOG0240|consen 452 LDQEELLSSTRRLYEDIQQELSEIQEENEAAKDEVKEVLTALEELAVNYDQKSEEKESKLSQNLKSELQSLQEPSEHQSK 531 (607)
T ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhhhhhhHHHHHhhhhcccchhH
Confidence 9999999999999999999999999999888888888888989888855555544444433 3355555555544443
Q ss_pred HHH
Q 007520 236 LHE 238 (600)
Q Consensus 236 ~~e 238 (600)
-..
T Consensus 532 r~~ 534 (607)
T KOG0240|consen 532 RIT 534 (607)
T ss_pred HHH
Confidence 333
No 27
>PRK09687 putative lyase; Provisional
Probab=98.96 E-value=3.7e-08 Score=101.90 Aligned_cols=167 Identities=15% Similarity=0.149 Sum_probs=130.1
Q ss_pred hcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCcchHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcCCccHH
Q 007520 345 DEVGLPKILQLLTSEDPDVQIHAVKVVANLAAEDINQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMNEMNQG 424 (600)
Q Consensus 345 e~GgV~~Lv~LL~s~~~~vr~~Aa~aL~nLa~~~~~~~~iv~~G~I~~Lv~lL~~~~~~~v~~~Al~aL~NLa~~~~~r~ 424 (600)
..-.++.|+.+|.+++..+|..|+.+|..+-. ...++.+..++. ++++.++..++++|..|...+..
T Consensus 21 ~~~~~~~L~~~L~d~d~~vR~~A~~aL~~~~~----------~~~~~~l~~ll~-~~d~~vR~~A~~aLg~lg~~~~~-- 87 (280)
T PRK09687 21 KKLNDDELFRLLDDHNSLKRISSIRVLQLRGG----------QDVFRLAIELCS-SKNPIERDIGADILSQLGMAKRC-- 87 (280)
T ss_pred hhccHHHHHHHHhCCCHHHHHHHHHHHHhcCc----------chHHHHHHHHHh-CCCHHHHHHHHHHHHhcCCCccc--
Confidence 34458999999999999999999999987642 224566777766 77899999999999998764322
Q ss_pred HHHHhCchhhhHhhhccCCCHHHHHHHHHHHHHHhCCchhHHHHHHcChHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCc
Q 007520 425 LIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLCGNEKLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFAKCES 504 (600)
Q Consensus 425 ~I~~~G~I~~Lv~lL~~~~~~~v~~~Aa~aL~nLa~~~e~r~~i~~~G~i~~Lv~lL~s~~~~v~~~A~~aL~nLa~~~~ 504 (600)
...+++.|..++.+.+++.|+..|+.+|++++...... ...++..+...+.++++.|+..|+++|+.+..
T Consensus 88 ---~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~----~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~--- 157 (280)
T PRK09687 88 ---QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY----SPKIVEQSQITAFDKSTNVRFAVAFALSVIND--- 157 (280)
T ss_pred ---hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc----chHHHHHHHHHhhCCCHHHHHHHHHHHhccCC---
Confidence 22367778877556688899999999999996433211 11245567777888899999999999987642
Q ss_pred hhhhhcchhhHHHHHhCCcHHHHHHhhcCCCHHHHHHHHHHHHHhh
Q 007520 505 RAIVQGQRKGRSHLMEDSALEWLIANSKTNSASTRRHVELALCHLA 550 (600)
Q Consensus 505 ~~~~q~~~~~r~~l~e~g~l~~Lv~Ll~s~~~~v~~~Aa~aL~nLa 550 (600)
..+++.|+.++.++++.|+..|+.+|..+.
T Consensus 158 ----------------~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~ 187 (280)
T PRK09687 158 ----------------EAAIPLLINLLKDPNGDVRNWAAFALNSNK 187 (280)
T ss_pred ----------------HHHHHHHHHHhcCCCHHHHHHHHHHHhcCC
Confidence 248899999999999999999999999984
No 28
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=98.93 E-value=9.6e-08 Score=100.43 Aligned_cols=225 Identities=17% Similarity=0.133 Sum_probs=160.1
Q ss_pred HHHHHHhhC--CCCHHHHHHHHHHHHHhhC-CcchHHHHHHc------CCHHHHHHHHccCCCHHHHHHHHHHHHHhhcC
Q 007520 349 LPKILQLLT--SEDPDVQIHAVKVVANLAA-EDINQEKIVEE------GGLDALLLLLRTSQNTTILRVASGAIANLAMN 419 (600)
Q Consensus 349 V~~Lv~LL~--s~~~~vr~~Aa~aL~nLa~-~~~~~~~iv~~------G~I~~Lv~lL~~~~~~~v~~~Al~aL~NLa~~ 419 (600)
+..++.+|. +.++++....+..+..+.. ++.....+... ....+++.++. .+|..+...|+..|+.|...
T Consensus 57 ~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~-~~D~~i~~~a~~iLt~Ll~~ 135 (312)
T PF03224_consen 57 ASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLD-RNDSFIQLKAAFILTSLLSQ 135 (312)
T ss_dssp -----HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S--SSHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhc-CCCHHHHHHHHHHHHHHHHc
Confidence 556666664 4788999999999998877 45445555541 25788888776 66899999999999999988
Q ss_pred CccHHHHHHhCchhhhHhhhccC---CCHHHHHHHHHHHHHHhCCchhHHHHHHcChHHHHHHHH-----c--CCCHHHH
Q 007520 420 EMNQGLIMSRGGGQLLAKTASKT---DDPQTLRMVAGALANLCGNEKLHTMLEEDGAIKALLAMV-----R--SGNIDVI 489 (600)
Q Consensus 420 ~~~r~~I~~~G~I~~Lv~lL~~~---~~~~v~~~Aa~aL~nLa~~~e~r~~i~~~G~i~~Lv~lL-----~--s~~~~v~ 489 (600)
...+..-...+.++.++..+.+. ++...+..|+.+|.+|...+.+|..+.+.|+++.++.++ . ..+..++
T Consensus 136 ~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~ 215 (312)
T PF03224_consen 136 GPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQLQ 215 (312)
T ss_dssp TTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHH---------HHHHH
T ss_pred CCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHhcCcHHHHHHHHHhhcccCCCCchhHH
Confidence 55444443355677777777542 333566888999999999999999999999999999999 2 3445677
Q ss_pred HHHHHHHHHhhcCCchhhhhcchhhHHHHHhCCcHHHHHHhhcC-CCHHHHHHHHHHHHHhhcCch--hHHHHHHcccHH
Q 007520 490 AQVARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSKT-NSASTRRHVELALCHLAQNED--NARDFISRGGAK 566 (600)
Q Consensus 490 ~~A~~aL~nLa~~~~~~~~q~~~~~r~~l~e~g~l~~Lv~Ll~s-~~~~v~~~Aa~aL~nLa~~~~--~~~~lv~~G~l~ 566 (600)
..++.++|.|++. +.....+...+.++.|+.+++. ..+.|.+-+..+|.||...+. +...|+..|+++
T Consensus 216 Y~~ll~lWlLSF~---------~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~ 286 (312)
T PF03224_consen 216 YQALLCLWLLSFE---------PEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLLK 286 (312)
T ss_dssp HHHHHHHHHHTTS---------HHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHH
T ss_pred HHHHHHHHHHhcC---------HHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHHH
Confidence 8899999999976 4556668888899999998775 468999999999999987666 899999998888
Q ss_pred HHHHhhhcC-ChHHHHHH
Q 007520 567 ELVQISIES-SREDIRNL 583 (600)
Q Consensus 567 ~Lv~ll~~~-~~~~ir~~ 583 (600)
.|-.+.... +.+++.+-
T Consensus 287 ~l~~L~~rk~~Dedl~ed 304 (312)
T PF03224_consen 287 TLQNLSERKWSDEDLTED 304 (312)
T ss_dssp HHHHHHSS--SSHHHHHH
T ss_pred HHHHHhcCCCCCHHHHHH
Confidence 877776532 34555543
No 29
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=98.92 E-value=3.2e-08 Score=103.88 Aligned_cols=238 Identities=16% Similarity=0.214 Sum_probs=168.7
Q ss_pred HhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhC-CcchHHHHHHcCCHHHHHHHHccC------CCHHHHHHHHHHHHHh
Q 007520 344 CDEVGLPKILQLLTSEDPDVQIHAVKVVANLAA-EDINQEKIVEEGGLDALLLLLRTS------QNTTILRVASGAIANL 416 (600)
Q Consensus 344 ~e~GgV~~Lv~LL~s~~~~vr~~Aa~aL~nLa~-~~~~~~~iv~~G~I~~Lv~lL~~~------~~~~v~~~Al~aL~NL 416 (600)
+.+|.+.+|.....|++.++...++.+|+|+++ ++++|..|.+.||-.-++..|++. .+.+....+++.|.|-
T Consensus 84 I~a~~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny 163 (604)
T KOG4500|consen 84 IDAEALELLRQTPSSPDTEVHEQCFRALGNICYDNNENRAAFFNLGGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNY 163 (604)
T ss_pred hHHHHHHHHHhCCCCCcccHHHHHHHHHhhhhccCchhHHHHHhcCCceehHhhhccccccCCccHHHHHHHHHHHHHHh
Confidence 567788999999999999999999999999998 889999999999977777776642 1336677789999998
Q ss_pred hcC-CccHHHHHHhCchhhhHhhhccC---------------------------------------------CCHHHHHH
Q 007520 417 AMN-EMNQGLIMSRGGGQLLAKTASKT---------------------------------------------DDPQTLRM 450 (600)
Q Consensus 417 a~~-~~~r~~I~~~G~I~~Lv~lL~~~---------------------------------------------~~~~v~~~ 450 (600)
... +..+..+++.|+++.|..++--+ -.++...+
T Consensus 164 ~l~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM 243 (604)
T KOG4500|consen 164 ILDSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYPFCKDCSLVFMLLQLLPSMVREDIDEM 243 (604)
T ss_pred hCCcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhhhhhccchHHHHHHHHHHHhhccchhhH
Confidence 876 88899999999988776554211 11222333
Q ss_pred HHHHHHHHhCCchhHHHHHHcChHHHHHHHHcC-C-------CHHHHHHHHHHHHHhhcCCchhhhhcchhhHHHHHhCC
Q 007520 451 VAGALANLCGNEKLHTMLEEDGAIKALLAMVRS-G-------NIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLMEDS 522 (600)
Q Consensus 451 Aa~aL~nLa~~~e~r~~i~~~G~i~~Lv~lL~s-~-------~~~v~~~A~~aL~nLa~~~~~~~~q~~~~~r~~l~e~g 522 (600)
....|+..+.++..+-.+++.|.+..++.+++. + .......++....-|..++ +... .+...+
T Consensus 244 ~feila~~aend~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGD--------eSMq-~L~~~p 314 (604)
T KOG4500|consen 244 IFEILAKAAENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGD--------ESMQ-KLHADP 314 (604)
T ss_pred HHHHHHHHhcCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCc--------hHHH-HHhcCc
Confidence 344444445555666666677777777777642 1 1122233444444443332 1222 233444
Q ss_pred -cHHHHHHhhcCCCHHHHHHHHHHHHHhhcCchhHHHHHHcccHHHHHHhhhcCChH----HHHHHHHHHHhc
Q 007520 523 -ALEWLIANSKTNSASTRRHVELALCHLAQNEDNARDFISRGGAKELVQISIESSRE----DIRNLAKKTMKS 590 (600)
Q Consensus 523 -~l~~Lv~Ll~s~~~~v~~~Aa~aL~nLa~~~~~~~~lv~~G~l~~Lv~ll~~~~~~----~ir~~A~~~L~~ 590 (600)
.+..++..+.++|......++.++.|+++.++++-.+++.|.+..|+.++...... ....++..+|.+
T Consensus 315 ~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRn 387 (604)
T KOG4500|consen 315 QFLDFLESWFRSDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRN 387 (604)
T ss_pred HHHHHHHHHhcCCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHh
Confidence 78899999999999999999999999999999999999999999999998653211 233444455544
No 30
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.91 E-value=5.2e-08 Score=101.21 Aligned_cols=180 Identities=19% Similarity=0.199 Sum_probs=151.5
Q ss_pred ccccchHHHH---hhcCchhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhC-CcchHHHHHHcCCHHHHHHHHc
Q 007520 323 SLQKSNPSRE---LSGQRATIAKICDEVGLPKILQLLTSEDPDVQIHAVKVVANLAA-EDINQEKIVEEGGLDALLLLLR 398 (600)
Q Consensus 323 ~~~r~~a~~~---L~~~~~~~~~i~e~GgV~~Lv~LL~s~~~~vr~~Aa~aL~nLa~-~~~~~~~iv~~G~I~~Lv~lL~ 398 (600)
...+..++.. +..+-++...++..||+++++.++.+.++.+|..|+++|+.++. +|..+..+.+.|+++.|+.+|.
T Consensus 97 le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ls 176 (342)
T KOG2160|consen 97 LEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKILS 176 (342)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHHc
Confidence 3455556655 44566788899999999999999999999999999999999998 7888999999999999999999
Q ss_pred cCCCHHHHHHHHHHHHHhhcC-CccHHHHHHhCchhhhHhhhccC-CCHHHHHHHHHHHHHHhC-CchhHHHHHHcChHH
Q 007520 399 TSQNTTILRVASGAIANLAMN-EMNQGLIMSRGGGQLLAKTASKT-DDPQTLRMVAGALANLCG-NEKLHTMLEEDGAIK 475 (600)
Q Consensus 399 ~~~~~~v~~~Al~aL~NLa~~-~~~r~~I~~~G~I~~Lv~lL~~~-~~~~v~~~Aa~aL~nLa~-~~e~r~~i~~~G~i~ 475 (600)
.+.+..++..|+.|+++|-++ +.....+...+|+..|..++... .+..+++.++..+..|.. +...+..+...|...
T Consensus 177 ~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~~f~~ 256 (342)
T KOG2160|consen 177 SDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSLGFQR 256 (342)
T ss_pred cCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhH
Confidence 888888999999999999998 88999999999999999999653 566788899999999974 344555556677777
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHhhcC
Q 007520 476 ALLAMVRSGNIDVIAQVARGLANFAKC 502 (600)
Q Consensus 476 ~Lv~lL~s~~~~v~~~A~~aL~nLa~~ 502 (600)
.+..+..+.+..+...+..++..+...
T Consensus 257 ~~~~l~~~l~~~~~e~~l~~~l~~l~~ 283 (342)
T KOG2160|consen 257 VLENLISSLDFEVNEAALTALLSLLSE 283 (342)
T ss_pred HHHHHhhccchhhhHHHHHHHHHHHHH
Confidence 788888888888898888888777643
No 31
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=98.88 E-value=4.3e-08 Score=103.09 Aligned_cols=189 Identities=16% Similarity=0.139 Sum_probs=143.1
Q ss_pred CHHHHHHhhCCCCHHHHHHHHHHHHHhhCCcchHHHHHHcCCHHHHHHHHccC---CCHHHHHHHHHHHHHhhcCCccHH
Q 007520 348 GLPKILQLLTSEDPDVQIHAVKVVANLAAEDINQEKIVEEGGLDALLLLLRTS---QNTTILRVASGAIANLAMNEMNQG 424 (600)
Q Consensus 348 gV~~Lv~LL~s~~~~vr~~Aa~aL~nLa~~~~~~~~iv~~G~I~~Lv~lL~~~---~~~~v~~~Al~aL~NLa~~~~~r~ 424 (600)
...+++.++.++|..++..|+.+|..+....+.+......+.++.++.++.+. ++.++...|+.+|.+|...+..|.
T Consensus 106 ~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~ 185 (312)
T PF03224_consen 106 PYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQ 185 (312)
T ss_dssp -HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHH
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHH
Confidence 47888999999999999999999999887444433332245678888888742 233566889999999999999999
Q ss_pred HHHHhCchhhhHhhh------ccCCCHHHHHHHHHHHHHHhCCchhHHHHHHcChHHHHHHHHc-CCCHHHHHHHHHHHH
Q 007520 425 LIMSRGGGQLLAKTA------SKTDDPQTLRMVAGALANLCGNEKLHTMLEEDGAIKALLAMVR-SGNIDVIAQVARGLA 497 (600)
Q Consensus 425 ~I~~~G~I~~Lv~lL------~~~~~~~v~~~Aa~aL~nLa~~~e~r~~i~~~G~i~~Lv~lL~-s~~~~v~~~A~~aL~ 497 (600)
.+.+.|+++.|..++ ..+.+.+++..++.++|-|+.+++....+...+.|+.|+.+++ +....|.+-++.+|.
T Consensus 186 ~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~ 265 (312)
T PF03224_consen 186 VFWKSNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLLSFEPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILR 265 (312)
T ss_dssp HHHTHHHHHHHHHHHH---------HHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHH
T ss_pred HHHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHhcCHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHH
Confidence 999999999999999 4456668999999999999999999999999999999999996 677899999999999
Q ss_pred HhhcCCchhhhhcchhhHHHHHhCCcHHHHHHhhcC--CCHHHHHHHH
Q 007520 498 NFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSKT--NSASTRRHVE 543 (600)
Q Consensus 498 nLa~~~~~~~~q~~~~~r~~l~e~g~l~~Lv~Ll~s--~~~~v~~~Aa 543 (600)
||...++. .....|+..|+++.+-.+... .|+++..-..
T Consensus 266 Nl~~~~~~-------~~~~~mv~~~~l~~l~~L~~rk~~Dedl~edl~ 306 (312)
T PF03224_consen 266 NLLSKAPK-------SNIELMVLCGLLKTLQNLSERKWSDEDLTEDLE 306 (312)
T ss_dssp HTTSSSST-------THHHHHHHH-HHHHHHHHHSS--SSHHHHHHHH
T ss_pred HHHhccHH-------HHHHHHHHccHHHHHHHHhcCCCCCHHHHHHHH
Confidence 99976532 245567787777777766554 4777665443
No 32
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=98.82 E-value=1.5e-07 Score=101.83 Aligned_cols=199 Identities=15% Similarity=0.145 Sum_probs=149.2
Q ss_pred HHHhhCC-CCHHHHHHHHHHHHHhhCCcchHHHHHHcCCHHHHHHHHccCC-CHHHHHHHHHHHHHhhcCCccHHHHHHh
Q 007520 352 ILQLLTS-EDPDVQIHAVKVVANLAAEDINQEKIVEEGGLDALLLLLRTSQ-NTTILRVASGAIANLAMNEMNQGLIMSR 429 (600)
Q Consensus 352 Lv~LL~s-~~~~vr~~Aa~aL~nLa~~~~~~~~iv~~G~I~~Lv~lL~~~~-~~~v~~~Al~aL~NLa~~~~~r~~I~~~ 429 (600)
|...|.+ .+...+..|+.+|..|...+..|..+.+.+|+++|+.+|+... +..++..++.|+|-|+.++.........
T Consensus 148 l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~ 227 (429)
T cd00256 148 LKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVLADGVPTLVKLLSNATLGFQLQYQSIFCIWLLTFNPHAAEVLKRL 227 (429)
T ss_pred HHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHHccCHHHHHHHHhhccccHHHHHHHHHHHHHHhccHHHHHhhccc
Confidence 3344443 3577788899999999999999999999999999999998655 6789999999999999998777777778
Q ss_pred CchhhhHhhhccCCCHHHHHHHHHHHHHHhCC-------chhHHHHHHcChHHHHHHHHc--CCCHHHHH----------
Q 007520 430 GGGQLLAKTASKTDDPQTLRMVAGALANLCGN-------EKLHTMLEEDGAIKALLAMVR--SGNIDVIA---------- 490 (600)
Q Consensus 430 G~I~~Lv~lL~~~~~~~v~~~Aa~aL~nLa~~-------~e~r~~i~~~G~i~~Lv~lL~--s~~~~v~~---------- 490 (600)
|.|+.|+.++..+....+.+-++.+|.||... ......+++.|.++.+-.+.. =.|+++..
T Consensus 228 ~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~~l~~L~~rk~~DedL~edl~~L~e~L~ 307 (429)
T cd00256 228 SLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLKTLQSLEQRKYDDEDLTDDLKFLTEELK 307 (429)
T ss_pred cHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHHHHHHHhcCCCCcHHHHHHHHHHHHHHH
Confidence 99999999998877789999999999999753 234455666666554333332 12332211
Q ss_pred ---------------------------------------------HHHHHHHHhhc--CCchh----------hhhcchh
Q 007520 491 ---------------------------------------------QVARGLANFAK--CESRA----------IVQGQRK 513 (600)
Q Consensus 491 ---------------------------------------------~A~~aL~nLa~--~~~~~----------~~q~~~~ 513 (600)
.....|..+-. .+|.. ..+-+|.
T Consensus 308 ~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~EN~~kf~~~~~~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~ 387 (429)
T cd00256 308 NSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRENADRLNEKNYELLKILIHLLETSVDPIILAVACHDIGEYVRHYPR 387 (429)
T ss_pred HHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHHHHHHHHhcchHHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCcc
Confidence 23344444431 12211 1222477
Q ss_pred hHHHHHhCCcHHHHHHhhcCCCHHHHHHHHHHHHHhh
Q 007520 514 GRSHLMEDSALEWLIANSKTNSASTRRHVELALCHLA 550 (600)
Q Consensus 514 ~r~~l~e~g~l~~Lv~Ll~s~~~~v~~~Aa~aL~nLa 550 (600)
||..+.+.|+=..++.++.++|+.|+..|..|+..|-
T Consensus 388 gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm 424 (429)
T cd00256 388 GKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKLM 424 (429)
T ss_pred HHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998773
No 33
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.81 E-value=2.8e-07 Score=95.76 Aligned_cols=185 Identities=16% Similarity=0.105 Sum_probs=157.8
Q ss_pred CCCHHHHHHHHHHHHHhhCCcchHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcC-CccHHHHHHhCchhhhH
Q 007520 358 SEDPDVQIHAVKVVANLAAEDINQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMN-EMNQGLIMSRGGGQLLA 436 (600)
Q Consensus 358 s~~~~vr~~Aa~aL~nLa~~~~~~~~iv~~G~I~~Lv~lL~~~~~~~v~~~Al~aL~NLa~~-~~~r~~I~~~G~I~~Lv 436 (600)
+.+.+-+..|..-|.-++.+-+|...++..||+.+++..+. +.+..++..|+++|...+.| |..+..+++.|+++.|+
T Consensus 94 s~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~-~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll 172 (342)
T KOG2160|consen 94 SVDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLE-NSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLL 172 (342)
T ss_pred cCCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhc-CCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHH
Confidence 45677888888888888888889999999999999999887 77899999999999999998 99999999999999999
Q ss_pred hhhccCCCHHHHHHHHHHHHHHhCC-chhHHHHHHcChHHHHHHHHcC--CCHHHHHHHHHHHHHhhcCCchhhhhcchh
Q 007520 437 KTASKTDDPQTLRMVAGALANLCGN-EKLHTMLEEDGAIKALLAMVRS--GNIDVIAQVARGLANFAKCESRAIVQGQRK 513 (600)
Q Consensus 437 ~lL~~~~~~~v~~~Aa~aL~nLa~~-~e~r~~i~~~G~i~~Lv~lL~s--~~~~v~~~A~~aL~nLa~~~~~~~~q~~~~ 513 (600)
..|..+++..++..|..++++|..+ +.+...+...+|...|..+|.+ .+..++..|+..+..|...+ ..
T Consensus 173 ~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~--------~s 244 (342)
T KOG2160|consen 173 KILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQED--------KS 244 (342)
T ss_pred HHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhh--------hh
Confidence 9997655546778999999999854 7888889998899999999987 66778888999999998654 23
Q ss_pred hHHHHHhCCcHHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 007520 514 GRSHLMEDSALEWLIANSKTNSASTRRHVELALCHLAQ 551 (600)
Q Consensus 514 ~r~~l~e~g~l~~Lv~Ll~s~~~~v~~~Aa~aL~nLa~ 551 (600)
.+..+...|....++.+..+.+.++...+..++..+..
T Consensus 245 ~~d~~~~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~ 282 (342)
T KOG2160|consen 245 DEDIASSLGFQRVLENLISSLDFEVNEAALTALLSLLS 282 (342)
T ss_pred hhhHHHHhhhhHHHHHHhhccchhhhHHHHHHHHHHHH
Confidence 34456667777788888888899999999998888754
No 34
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.73 E-value=3.2e-07 Score=97.48 Aligned_cols=204 Identities=16% Similarity=0.148 Sum_probs=166.9
Q ss_pred HHHHHHHHHHHHHhhCCcchHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcCCccHHHHHHhCchhhhHhhhc
Q 007520 361 PDVQIHAVKVVANLAAEDINQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMNEMNQGLIMSRGGGQLLAKTAS 440 (600)
Q Consensus 361 ~~vr~~Aa~aL~nLa~~~~~~~~iv~~G~I~~Lv~lL~~~~~~~v~~~Al~aL~NLa~~~~~r~~I~~~G~I~~Lv~lL~ 440 (600)
..+.+.|+-.|.|++.+-..-.++...+.+..||..|. ..+.++.......|..|+...+|+..+...|.|..|+.++.
T Consensus 277 eqLLrva~ylLlNlAed~~~ElKMrrkniV~mLVKaLd-r~n~~Ll~lv~~FLkKLSIf~eNK~~M~~~~iveKL~klfp 355 (791)
T KOG1222|consen 277 EQLLRVAVYLLLNLAEDISVELKMRRKNIVAMLVKALD-RSNSSLLTLVIKFLKKLSIFDENKIVMEQNGIVEKLLKLFP 355 (791)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHHHc-ccchHHHHHHHHHHHHhhhhccchHHHHhccHHHHHHHhcC
Confidence 44567788889999998888888888889999999998 44677888899999999999999999999999999999984
Q ss_pred cCCCHHHHHHHHHHHHHHhCCchhHHHHHHcChHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchhhhhcchhhHHHHHh
Q 007520 441 KTDDPQTLRMVAGALANLCGNEKLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLME 520 (600)
Q Consensus 441 ~~~~~~v~~~Aa~aL~nLa~~~e~r~~i~~~G~i~~Lv~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~q~~~~~r~~l~e 520 (600)
+.+|+++...+..|.||+.+..++..++..|.+|-|+.++.++.. .-.|+..|..++.+ ...+..+.-
T Consensus 356 -~~h~dL~~~tl~LlfNlSFD~glr~KMv~~GllP~l~~ll~~d~~--~~iA~~~lYh~S~d---------D~~K~Mfay 423 (791)
T KOG1222|consen 356 -IQHPDLRKATLMLLFNLSFDSGLRPKMVNGGLLPHLASLLDSDTK--HGIALNMLYHLSCD---------DDAKAMFAY 423 (791)
T ss_pred -CCCHHHHHHHHHHhhhccccccccHHHhhccchHHHHHHhCCccc--chhhhhhhhhhccC---------cHHHHHHHH
Confidence 689999999999999999999999999999999999999976543 22467777887744 356667777
Q ss_pred CCcHHHHHHhh-cCCCHHHHHHHHHHHHHhhcCchhHHHHHHcccHHHHHHhhhcCCh
Q 007520 521 DSALEWLIANS-KTNSASTRRHVELALCHLAQNEDNARDFISRGGAKELVQISIESSR 577 (600)
Q Consensus 521 ~g~l~~Lv~Ll-~s~~~~v~~~Aa~aL~nLa~~~~~~~~lv~~G~l~~Lv~ll~~~~~ 577 (600)
..+|+.+...+ ...+..|-........|||.+..+++.++++.|+..|+...-.+..
T Consensus 424 Tdci~~lmk~v~~~~~~~vdl~lia~ciNl~lnkRNaQlvceGqgL~~LM~ra~k~~D 481 (791)
T KOG1222|consen 424 TDCIKLLMKDVLSGTGSEVDLALIALCINLCLNKRNAQLVCEGQGLDLLMERAIKSRD 481 (791)
T ss_pred HHHHHHHHHHHHhcCCceecHHHHHHHHHHHhccccceEEecCcchHHHHHHHhcccc
Confidence 88999999854 4445556555555567889999999988888888888776655443
No 35
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=98.71 E-value=1.8e-06 Score=93.56 Aligned_cols=255 Identities=17% Similarity=0.106 Sum_probs=182.9
Q ss_pred hhcCchhHHHHHhc-----CCHHHHHHhhCCCCHHHHHHHHHHHHHhhCC-cchHHHHHHcCCHHHHHHHHccCCCHHHH
Q 007520 333 LSGQRATIAKICDE-----VGLPKILQLLTSEDPDVQIHAVKVVANLAAE-DINQEKIVEEGGLDALLLLLRTSQNTTIL 406 (600)
Q Consensus 333 L~~~~~~~~~i~e~-----GgV~~Lv~LL~s~~~~vr~~Aa~aL~nLa~~-~~~~~~iv~~G~I~~Lv~lL~~~~~~~v~ 406 (600)
+..++.....+.+. ....+++.+|..++..+...|+.+|..+... +.+.......-.+..|...+....+....
T Consensus 82 l~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~ 161 (429)
T cd00256 82 LQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILAKLACFGLAKMEGSDLDYYFNWLKEQLNNITNNDYV 161 (429)
T ss_pred HHhchHHHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHHHHHHhcCccccchhHHHHHHHHHHHHhhccCCcchH
Confidence 34444444555554 3477888899999999999999999998763 32211111111234455566544446677
Q ss_pred HHHHHHHHHhhcCCccHHHHHHhCchhhhHhhhccCC-CHHHHHHHHHHHHHHhCCchhHHHHHHcChHHHHHHHHc-CC
Q 007520 407 RVASGAIANLAMNEMNQGLIMSRGGGQLLAKTASKTD-DPQTLRMVAGALANLCGNEKLHTMLEEDGAIKALLAMVR-SG 484 (600)
Q Consensus 407 ~~Al~aL~NLa~~~~~r~~I~~~G~I~~Lv~lL~~~~-~~~v~~~Aa~aL~nLa~~~e~r~~i~~~G~i~~Lv~lL~-s~ 484 (600)
..|+.+|.+|...+..|..+.+.+|+++|+.+|.... +.+.+..++-++|-|+.+++....+...|.|+.|+.+++ +.
T Consensus 162 ~~~v~~L~~LL~~~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~l~~i~k~s~ 241 (429)
T cd00256 162 QTAARCLQMLLRVDEYRFAFVLADGVPTLVKLLSNATLGFQLQYQSIFCIWLLTFNPHAAEVLKRLSLIQDLSDILKEST 241 (429)
T ss_pred HHHHHHHHHHhCCchHHHHHHHccCHHHHHHHHhhccccHHHHHHHHHHHHHHhccHHHHHhhccccHHHHHHHHHHhhh
Confidence 7889999999999999999999999999999996544 568999999999999999888887888899999999997 66
Q ss_pred CHHHHHHHHHHHHHhhcCCc----h--hh---hh----------------------------------------------
Q 007520 485 NIDVIAQVARGLANFAKCES----R--AI---VQ---------------------------------------------- 509 (600)
Q Consensus 485 ~~~v~~~A~~aL~nLa~~~~----~--~~---~q---------------------------------------------- 509 (600)
-..|.+-++.+|.||...+. . .. ..
T Consensus 242 KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~~l~~L~~rk~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~ 321 (429)
T cd00256 242 KEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLKTLQSLEQRKYDDEDLTDDLKFLTEELKNSVQDLSSFDEYKS 321 (429)
T ss_pred hHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 77899999999999986431 0 00 00
Q ss_pred ----c-------c------hhhHHHHHhC--CcHHHHHHhhc-CCCHHHHHHHHHHHHHhhcC-chhHHHHHHcccHHHH
Q 007520 510 ----G-------Q------RKGRSHLMED--SALEWLIANSK-TNSASTRRHVELALCHLAQN-EDNARDFISRGGAKEL 568 (600)
Q Consensus 510 ----~-------~------~~~r~~l~e~--g~l~~Lv~Ll~-s~~~~v~~~Aa~aL~nLa~~-~~~~~~lv~~G~l~~L 568 (600)
| | .++-..|.+. ..+..|+.++. +.|+.+..-||.=++.++.+ |..+..+-+.|+=..+
T Consensus 322 El~sg~L~WSp~H~se~FW~EN~~kf~~~~~~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~v 401 (429)
T cd00256 322 ELRSGRLHWSPVHKSEKFWRENADRLNEKNYELLKILIHLLETSVDPIILAVACHDIGEYVRHYPRGKDVVEQLGGKQRV 401 (429)
T ss_pred HHhcCCccCCCCCCCchHHHHHHHHHHhcchHHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCccHHHHHHHcCcHHHH
Confidence 0 0 2233334443 35567778774 56777888888888888875 4566666678998889
Q ss_pred HHhhhcCChHHHHHHHHHHH
Q 007520 569 VQISIESSREDIRNLAKKTM 588 (600)
Q Consensus 569 v~ll~~~~~~~ir~~A~~~L 588 (600)
++++.+++ ++++-.|..++
T Consensus 402 M~Lm~h~d-~~Vr~eAL~av 420 (429)
T cd00256 402 MRLLNHED-PNVRYEALLAV 420 (429)
T ss_pred HHHhcCCC-HHHHHHHHHHH
Confidence 99998765 56777766444
No 36
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.70 E-value=1.9e-06 Score=87.68 Aligned_cols=261 Identities=18% Similarity=0.144 Sum_probs=173.9
Q ss_pred HHHhcccCCCCccccchHHHH-hhcCchhHHHHHhcC---CHHHHHHhhCCCCHHHHHHHHHHHHHhhCCcchHHHHHHc
Q 007520 312 SKGSSRFGAPMSLQKSNPSRE-LSGQRATIAKICDEV---GLPKILQLLTSEDPDVQIHAVKVVANLAAEDINQEKIVEE 387 (600)
Q Consensus 312 ~~Lv~~L~s~~~~~r~~a~~~-L~~~~~~~~~i~e~G---gV~~Lv~LL~s~~~~vr~~Aa~aL~nLa~~~~~~~~iv~~ 387 (600)
..++.++.+.++.++..|... +..... ..++...+ .++.+..++....+ .+.|+.+|.|++.++..+..+...
T Consensus 6 ~elv~ll~~~sP~v~~~AV~~l~~lt~~-~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~~l~~~ll~~ 82 (353)
T KOG2973|consen 6 VELVELLHSLSPPVRKAAVEHLLGLTGR-GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKEELRKKLLQD 82 (353)
T ss_pred HHHHHHhccCChHHHHHHHHHHhhcccc-chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhHHHHHHHHHH
Confidence 357788888888888877776 433333 22233333 37778888876555 677899999999999999998887
Q ss_pred CCHHHHHHHHccCCCHHHHHHHHHHHHHhhcCCccHHHHHH--h----CchhhhHhhhccCCCH--HHHHHHHHHHHHHh
Q 007520 388 GGLDALLLLLRTSQNTTILRVASGAIANLAMNEMNQGLIMS--R----GGGQLLAKTASKTDDP--QTLRMVAGALANLC 459 (600)
Q Consensus 388 G~I~~Lv~lL~~~~~~~v~~~Al~aL~NLa~~~~~r~~I~~--~----G~I~~Lv~lL~~~~~~--~v~~~Aa~aL~nLa 459 (600)
.+..++..+. ++...+...++.+|.||+..++....+.. . .++..++..+.+.+-. .-....+..++||+
T Consensus 83 -~~k~l~~~~~-~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~nls 160 (353)
T KOG2973|consen 83 -LLKVLMDMLT-DPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFANLS 160 (353)
T ss_pred -HHHHHHHHhc-CcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHHHHHh
Confidence 6777777776 44345778899999999999776655544 2 3444444433222111 33456677999999
Q ss_pred CCchhHHHHHHcChHHH-HHHHHcCCCHHHHH-HHHHHHHHhhcCCchhhhhcchhhHHHHHh--CCcHHHHH-------
Q 007520 460 GNEKLHTMLEEDGAIKA-LLAMVRSGNIDVIA-QVARGLANFAKCESRAIVQGQRKGRSHLME--DSALEWLI------- 528 (600)
Q Consensus 460 ~~~e~r~~i~~~G~i~~-Lv~lL~s~~~~v~~-~A~~aL~nLa~~~~~~~~q~~~~~r~~l~e--~g~l~~Lv------- 528 (600)
..+.+|..+.....++. .+..+.+.+..||. .++++|.|.|+... ....++. ...+|.|+
T Consensus 161 ~~~~gR~l~~~~k~~p~~kll~ft~~~s~vRr~GvagtlkN~cFd~~---------~h~~lL~e~~~lLp~iLlPlagpe 231 (353)
T KOG2973|consen 161 QFEAGRKLLLEPKRFPDQKLLPFTSEDSQVRRGGVAGTLKNCCFDAK---------LHEVLLDESINLLPAILLPLAGPE 231 (353)
T ss_pred hhhhhhhHhcchhhhhHhhhhcccccchhhhccchHHHHHhhhccch---------hHHHHhcchHHHHHHHHhhcCCcc
Confidence 99999999887765443 22223445566654 48899999997642 2222322 12333322
Q ss_pred --------------Hhhc-----CCCHHHHHHHHHHHHHhhcCchhHHHHHHcccHHHHHHhhhcCChHHHHHHHHH
Q 007520 529 --------------ANSK-----TNSASTRRHVELALCHLAQNEDNARDFISRGGAKELVQISIESSREDIRNLAKK 586 (600)
Q Consensus 529 --------------~Ll~-----s~~~~v~~~Aa~aL~nLa~~~~~~~~lv~~G~l~~Lv~ll~~~~~~~ir~~A~~ 586 (600)
+++. .+++.++..-..+|.-||.....++.+.+-|+-+.|-.+-.....++++.++-+
T Consensus 232 e~sEEdm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT~~GRe~lR~kgvYpilRElhk~e~ded~~~ace~ 308 (353)
T KOG2973|consen 232 ELSEEDMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCATRAGREVLRSKGVYPILRELHKWEEDEDIREACEQ 308 (353)
T ss_pred ccCHHHHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhhhHhHHHHHhcCchHHHHHHhcCCCcHHHHHHHHH
Confidence 2222 247899999999999999999998888888776665555555556667766553
No 37
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.64 E-value=2.6e-06 Score=101.80 Aligned_cols=55 Identities=18% Similarity=0.134 Sum_probs=32.7
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHhhcCchhHHHHHHcccHHHHHHhhhcCChHHHHHHHHHHHhc
Q 007520 525 EWLIANSKTNSASTRRHVELALCHLAQNEDNARDFISRGGAKELVQISIESSREDIRNLAKKTMKS 590 (600)
Q Consensus 525 ~~Lv~Ll~s~~~~v~~~Aa~aL~nLa~~~~~~~~lv~~G~l~~Lv~ll~~~~~~~ir~~A~~~L~~ 590 (600)
+.++..+.++++.||..|+.+|..+.. ...++.|+.++.+++ ..+|..|...|-.
T Consensus 810 ~~l~~aL~d~d~~VR~~Aa~aL~~l~~----------~~a~~~L~~~L~D~~-~~VR~~A~~aL~~ 864 (897)
T PRK13800 810 AAATAALRASAWQVRQGAARALAGAAA----------DVAVPALVEALTDPH-LDVRKAAVLALTR 864 (897)
T ss_pred HHHHHHhcCCChHHHHHHHHHHHhccc----------cchHHHHHHHhcCCC-HHHHHHHHHHHhc
Confidence 445555666666666666666655421 224467777776654 4677777776644
No 38
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=98.62 E-value=1.1e-06 Score=93.08 Aligned_cols=249 Identities=19% Similarity=0.225 Sum_probs=176.9
Q ss_pred cccCchHHHhcccCCCCcc--ccchHHHHhh--cCchhHHHHHhcCCHHHHHHhhC-CCCHHHHHHHHHHHHHhhC-Ccc
Q 007520 306 YTKDYISKGSSRFGAPMSL--QKSNPSRELS--GQRATIAKICDEVGLPKILQLLT-SEDPDVQIHAVKVVANLAA-EDI 379 (600)
Q Consensus 306 ~~~g~i~~Lv~~L~s~~~~--~r~~a~~~L~--~~~~~~~~i~e~GgV~~Lv~LL~-s~~~~vr~~Aa~aL~nLa~-~~~ 379 (600)
...|++..|+.++.++... ++..+++.|. ...+++..++..| +..++.+-+ .+.++..+..+.+|.++.. ++.
T Consensus 177 R~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mFKHSee 255 (832)
T KOG3678|consen 177 RLDGGLDLLLRMFQAPNLETSVRVEAARLLEQILVAENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHMFKHSEE 255 (832)
T ss_pred hccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHhhhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHhhhhHH
Confidence 3678899999999888543 3655655421 2233444444444 555554443 4567888899999999998 677
Q ss_pred hHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcC--CccHHHHHHhCchhhhHhhhccCCCHHHHHHHHHHHHH
Q 007520 380 NQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMN--EMNQGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALAN 457 (600)
Q Consensus 380 ~~~~iv~~G~I~~Lv~lL~~~~~~~v~~~Al~aL~NLa~~--~~~r~~I~~~G~I~~Lv~lL~~~~~~~v~~~Aa~aL~n 457 (600)
.+..++..||+..++-.++ ..++.+.++|+.||.|++.+ -..+..|++..+-..|..+.+. .|.-++..||.+++-
T Consensus 256 t~~~Lvaa~~lD~vl~~~r-Rt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~s-kDel~R~~AClAV~v 333 (832)
T KOG3678|consen 256 TCQRLVAAGGLDAVLYWCR-RTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFS-KDELLRLHACLAVAV 333 (832)
T ss_pred HHHHHHhhcccchheeecc-cCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcc-hHHHHHHHHHHHHhh
Confidence 8999999999999998888 55788999999999999987 6778888888777788877754 576788899999999
Q ss_pred HhCCchhHHHHHHcChHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchhhhhcchhhHHHHHhCCcHHHHHHhhcCCCHH
Q 007520 458 LCGNEKLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSKTNSAS 537 (600)
Q Consensus 458 La~~~e~r~~i~~~G~i~~Lv~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~q~~~~~r~~l~e~g~l~~Lv~Ll~s~~~~ 537 (600)
|+.+.+.-..+...|.+..+-.++.+.||. .++. +....+||. -...++.|+.++.+..-.
T Consensus 334 lat~KE~E~~VrkS~TlaLVEPlva~~DP~----------~FAR-D~hd~aQG~--------~~d~LqRLvPlLdS~R~E 394 (832)
T KOG3678|consen 334 LATNKEVEREVRKSGTLALVEPLVASLDPG----------RFAR-DAHDYAQGR--------GPDDLQRLVPLLDSNRLE 394 (832)
T ss_pred hhhhhhhhHHHhhccchhhhhhhhhccCcc----------hhhh-hhhhhhccC--------ChHHHHHhhhhhhcchhh
Confidence 999999988888888887777777777774 2232 111122210 023677888888877666
Q ss_pred HHHHHHHHHHHhhcC--chh-HHHHHHcccHHHHHHhhhcCC
Q 007520 538 TRRHVELALCHLAQN--EDN-ARDFISRGGAKELVQISIESS 576 (600)
Q Consensus 538 v~~~Aa~aL~nLa~~--~~~-~~~lv~~G~l~~Lv~ll~~~~ 576 (600)
.+.-+++-+|.=+.- ..+ ...+-+-|+|..|.++..+++
T Consensus 395 Aq~i~AF~l~~EAaIKs~Q~K~kVFseIGAIQaLKevaSS~d 436 (832)
T KOG3678|consen 395 AQCIGAFYLCAEAAIKSLQGKTKVFSEIGAIQALKEVASSPD 436 (832)
T ss_pred hhhhHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhcCch
Confidence 666666655554432 223 344457799999999997544
No 39
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=98.61 E-value=5.9e-07 Score=95.20 Aligned_cols=175 Identities=23% Similarity=0.316 Sum_probs=145.0
Q ss_pred HHHHHHcCCHHHHHHHHccCCCH--HHHHHHHHHHHHhhcCCccHHHHHHhCchhhhHhhhccCCCHHHHHHHHHHHHHH
Q 007520 381 QEKIVEEGGLDALLLLLRTSQNT--TILRVASGAIANLAMNEMNQGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANL 458 (600)
Q Consensus 381 ~~~iv~~G~I~~Lv~lL~~~~~~--~v~~~Al~aL~NLa~~~~~r~~I~~~G~I~~Lv~lL~~~~~~~v~~~Aa~aL~nL 458 (600)
+..|...|++..|+.++. .++. .++..|...|-.+.. .+|+..++..| +..++.+......++..+.+++.|.+|
T Consensus 173 CD~iR~~~~lD~Llrmf~-aPn~et~vRve~~rlLEq~~~-aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~m 249 (832)
T KOG3678|consen 173 CDAIRLDGGLDLLLRMFQ-APNLETSVRVEAARLLEQILV-AENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHM 249 (832)
T ss_pred hhHhhccchHHHHHHHHh-CCchhHHHHHHHHHHHHHHHh-hhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHH
Confidence 556777889999999998 4444 357778888877655 47888888876 666666665556778999999999999
Q ss_pred h-CCchhHHHHHHcChHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchhhhhcchhhHHHHHhCCcHHHHHHhhcCCCHH
Q 007520 459 C-GNEKLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSKTNSAS 537 (600)
Q Consensus 459 a-~~~e~r~~i~~~G~i~~Lv~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~q~~~~~r~~l~e~g~l~~Lv~Ll~s~~~~ 537 (600)
- +.++.+..++..|++..++-..+..+|.+..+|+-+|+|++.+. ...++..|++..+.+||..+..+.|+-
T Consensus 250 FKHSeet~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~-------~~a~qrrmveKr~~EWLF~LA~skDel 322 (832)
T KOG3678|consen 250 FKHSEETCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHG-------GQAVQRRMVEKRAAEWLFPLAFSKDEL 322 (832)
T ss_pred hhhhHHHHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhc-------hhHHHHHHHHhhhhhhhhhhhcchHHH
Confidence 7 55788999999999999999999889999999999999999874 245777899999999999999999999
Q ss_pred HHHHHHHHHHHhhcCchhHHHHHHcccH
Q 007520 538 TRRHVELALCHLAQNEDNARDFISRGGA 565 (600)
Q Consensus 538 v~~~Aa~aL~nLa~~~~~~~~lv~~G~l 565 (600)
++.+||.+++.|+.+.+.-..+...|.+
T Consensus 323 ~R~~AClAV~vlat~KE~E~~VrkS~Tl 350 (832)
T KOG3678|consen 323 LRLHACLAVAVLATNKEVEREVRKSGTL 350 (832)
T ss_pred HHHHHHHHHhhhhhhhhhhHHHhhccch
Confidence 9999999999999988876666666543
No 40
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.60 E-value=5e-06 Score=93.12 Aligned_cols=270 Identities=15% Similarity=0.142 Sum_probs=196.6
Q ss_pred ccCchHHHhcccCCCC-ccccchHHHHhhcCchhHHHHHhcCCHHHHHHhhCC--CCHHHHHHHHHHHHHhhCCcc----
Q 007520 307 TKDYISKGSSRFGAPM-SLQKSNPSRELSGQRATIAKICDEVGLPKILQLLTS--EDPDVQIHAVKVVANLAAEDI---- 379 (600)
Q Consensus 307 ~~g~i~~Lv~~L~s~~-~~~r~~a~~~L~~~~~~~~~i~e~GgV~~Lv~LL~s--~~~~vr~~Aa~aL~nLa~~~~---- 379 (600)
.+..|+.|+..+.+.+ ..-|..|+..+-+-....+..+..-|+++|+..|.. .|++....+...++++..+++
T Consensus 20 ~aETI~kLcDRvessTL~eDRR~A~rgLKa~srkYR~~Vga~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~v 99 (970)
T KOG0946|consen 20 AAETIEKLCDRVESSTLLEDRRDAVRGLKAFSRKYREEVGAQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPEV 99 (970)
T ss_pred HHhHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchhh
Confidence 4567889998888764 455666666644333334445667789999999964 588999999999999887442
Q ss_pred --h-H----------HHHH-HcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcC--CccHHHHHH-hCchhhhHhhhccC
Q 007520 380 --N-Q----------EKIV-EEGGLDALLLLLRTSQNTTILRVASGAIANLAMN--EMNQGLIMS-RGGGQLLAKTASKT 442 (600)
Q Consensus 380 --~-~----------~~iv-~~G~I~~Lv~lL~~~~~~~v~~~Al~aL~NLa~~--~~~r~~I~~-~G~I~~Lv~lL~~~ 442 (600)
+ + ..++ ..+.|..|+..+. ..|-.|+..+...|.+|-.+ +..+..++. +-||..|+.+|.+
T Consensus 100 ~dds~qsdd~g~~iae~fik~qd~I~lll~~~e-~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~D- 177 (970)
T KOG0946|consen 100 MDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLE-EFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRD- 177 (970)
T ss_pred cccchhhhHHHHHHHHHHHcCchhHHHHHHHHH-hhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhh-
Confidence 1 1 2233 4567888888887 55778999999999999877 677888776 8899999999965
Q ss_pred CCHHHHHHHHHHHHHHhCC-chhHHHHHHcChHHHHHHHHcC---CCH-HHHHHHHHHHHHhhcCCchhhhhcchhhHHH
Q 007520 443 DDPQTLRMVAGALANLCGN-EKLHTMLEEDGAIKALLAMVRS---GNI-DVIAQVARGLANFAKCESRAIVQGQRKGRSH 517 (600)
Q Consensus 443 ~~~~v~~~Aa~aL~nLa~~-~e~r~~i~~~G~i~~Lv~lL~s---~~~-~v~~~A~~aL~nLa~~~~~~~~q~~~~~r~~ 517 (600)
....++-.++..|+.|+.+ +.++..++=.+++..|+.++.. -+. -|...|+..|.||-..+ ..++..
T Consensus 178 srE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N--------~SNQ~~ 249 (970)
T KOG0946|consen 178 SREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNN--------ISNQNF 249 (970)
T ss_pred hhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhC--------cchhhH
Confidence 4446777788899999866 5566666668899999999952 233 47788999999999876 457889
Q ss_pred HHhCCcHHHHHHhhcC---CCH--------H--HHHHHHHHHHHhhcCc-------hhHHHHHHcccHHHHHHhhhcCC-
Q 007520 518 LMEDSALEWLIANSKT---NSA--------S--TRRHVELALCHLAQNE-------DNARDFISRGGAKELVQISIESS- 576 (600)
Q Consensus 518 l~e~g~l~~Lv~Ll~s---~~~--------~--v~~~Aa~aL~nLa~~~-------~~~~~lv~~G~l~~Lv~ll~~~~- 576 (600)
|.+.+.||.|..++.. ++. . -...+..+++.++... .+.+.+...+++..|+.++-++.
T Consensus 250 FrE~~~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~v 329 (970)
T KOG0946|consen 250 FREGSYIPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGV 329 (970)
T ss_pred HhccccHHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCC
Confidence 9999999999987654 221 1 1234555666665421 14467778999999999988774
Q ss_pred hHHHHHHHHH
Q 007520 577 REDIRNLAKK 586 (600)
Q Consensus 577 ~~~ir~~A~~ 586 (600)
+.+|+..++-
T Consensus 330 p~dIltesii 339 (970)
T KOG0946|consen 330 PADILTESII 339 (970)
T ss_pred cHhHHHHHHH
Confidence 3356665553
No 41
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=98.59 E-value=3e-07 Score=83.00 Aligned_cols=150 Identities=17% Similarity=0.169 Sum_probs=121.5
Q ss_pred CCHHHHHHHHccCCCHHHHHHHHHHHHHhhcCCccHHHHHHhCchhhhHhhhccCCCHHHHHHHHHHHHHHhCCchhHHH
Q 007520 388 GGLDALLLLLRTSQNTTILRVASGAIANLAMNEMNQGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLCGNEKLHTM 467 (600)
Q Consensus 388 G~I~~Lv~lL~~~~~~~v~~~Al~aL~NLa~~~~~r~~I~~~G~I~~Lv~lL~~~~~~~v~~~Aa~aL~nLa~~~e~r~~ 467 (600)
+.+..||.-+....+.+.++....-|+|++.+|.|-..+...+++...+..|.. .+..+...+++.|||+|.++.+...
T Consensus 16 ~Ylq~LV~efq~tt~~eakeqv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~e-~ne~LvefgIgglCNlC~d~~n~~~ 94 (173)
T KOG4646|consen 16 EYLQHLVDEFQTTTNIEAKEQVTANLANFAYDPINYSHLRQLDVLDLFVDSLEE-QNELLVEFGIGGLCNLCLDKTNAKF 94 (173)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhccCcchHHHHHHhhHHHHHHHHhhc-ccHHHHHHhHHHHHhhccChHHHHH
Confidence 457788888887889999999999999999999999999999999999999954 7778999999999999999999999
Q ss_pred HHHcChHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchhhhhcchhhHHHHHhCCcHHHHHHhhcCCCHHHHHHHHHHH
Q 007520 468 LEEDGAIKALLAMVRSGNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSKTNSASTRRHVELAL 546 (600)
Q Consensus 468 i~~~G~i~~Lv~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~q~~~~~r~~l~e~g~l~~Lv~Ll~s~~~~v~~~Aa~aL 546 (600)
|++.+++|..+..+.++...+...|+.++.-|+..+ ..-|..+....++..+.+.-.+.+...+--|..+|
T Consensus 95 I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~--------Rt~r~ell~p~Vv~~v~r~~~s~s~~~rnLa~~fl 165 (173)
T KOG4646|consen 95 IREALGLPLIIFVLSSPPEITVHSAALFLQLLEFGE--------RTERDELLSPAVVRTVQRWRESKSHDERNLASAFL 165 (173)
T ss_pred HHHhcCCceEEeecCCChHHHHHHHHHHHHHhcCcc--------cchhHHhccHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 999999999999999999999999999999998664 33455565555555555544333333333333333
No 42
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.57 E-value=3.7e-06 Score=100.50 Aligned_cols=151 Identities=21% Similarity=0.233 Sum_probs=99.1
Q ss_pred HHHHHHccCCCHHHHHHHHHHHHHhhcCCccHHHHHHhCchhhhHhhhccCCCHHHHHHHHHHHHHHhCCchhHHHHHHc
Q 007520 392 ALLLLLRTSQNTTILRVASGAIANLAMNEMNQGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLCGNEKLHTMLEED 471 (600)
Q Consensus 392 ~Lv~lL~~~~~~~v~~~Al~aL~NLa~~~~~r~~I~~~G~I~~Lv~lL~~~~~~~v~~~Aa~aL~nLa~~~e~r~~i~~~ 471 (600)
.|+.++. ++++.++..++.+|..+.... .++++.|..++.+ +++.++..|+.+|.++...+
T Consensus 746 ~l~~~l~-D~~~~VR~~aa~aL~~~~~~~--------~~~~~~L~~ll~D-~d~~VR~aA~~aLg~~g~~~--------- 806 (897)
T PRK13800 746 SVAGAAT-DENREVRIAVAKGLATLGAGG--------APAGDAVRALTGD-PDPLVRAAALAALAELGCPP--------- 806 (897)
T ss_pred HHHHHhc-CCCHHHHHHHHHHHHHhcccc--------chhHHHHHHHhcC-CCHHHHHHHHHHHHhcCCcc---------
Confidence 3444444 455566666666665554321 1125566666643 56677777777777653321
Q ss_pred ChHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchhhhhcchhhHHHHHhCCcHHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 007520 472 GAIKALLAMVRSGNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSKTNSASTRRHVELALCHLAQ 551 (600)
Q Consensus 472 G~i~~Lv~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~q~~~~~r~~l~e~g~l~~Lv~Ll~s~~~~v~~~Aa~aL~nLa~ 551 (600)
..+..++..|.++++.||..|+.+|..+.. ...++.|+.++.+++..||..|+.+|..+..
T Consensus 807 ~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-------------------~~a~~~L~~~L~D~~~~VR~~A~~aL~~~~~ 867 (897)
T PRK13800 807 DDVAAATAALRASAWQVRQGAARALAGAAA-------------------DVAVPALVEALTDPHLDVRKAAVLALTRWPG 867 (897)
T ss_pred hhHHHHHHHhcCCChHHHHHHHHHHHhccc-------------------cchHHHHHHHhcCCCHHHHHHHHHHHhccCC
Confidence 122456667777777788878887777642 2367999999999999999999999999732
Q ss_pred CchhHHHHHHcccHHHHHHhhhcCChHHHHHHHHHHHhc
Q 007520 552 NEDNARDFISRGGAKELVQISIESSREDIRNLAKKTMKS 590 (600)
Q Consensus 552 ~~~~~~~lv~~G~l~~Lv~ll~~~~~~~ir~~A~~~L~~ 590 (600)
++. ..+.|...+.+.+ ..+|..|...|.+
T Consensus 868 ~~~---------a~~~L~~al~D~d-~~Vr~~A~~aL~~ 896 (897)
T PRK13800 868 DPA---------ARDALTTALTDSD-ADVRAYARRALAH 896 (897)
T ss_pred CHH---------HHHHHHHHHhCCC-HHHHHHHHHHHhh
Confidence 222 4567777777654 6799999988864
No 43
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=98.56 E-value=9.4e-07 Score=93.20 Aligned_cols=193 Identities=16% Similarity=0.143 Sum_probs=142.5
Q ss_pred CCCHHHHHHHHHHHHHhhCCcchHHHHHHcCCHHHHHHHH-ccCCCHHHHHHHHHHHHHhhcCCccHHHHHHhCchhhhH
Q 007520 358 SEDPDVQIHAVKVVANLAAEDINQEKIVEEGGLDALLLLL-RTSQNTTILRVASGAIANLAMNEMNQGLIMSRGGGQLLA 436 (600)
Q Consensus 358 s~~~~vr~~Aa~aL~nLa~~~~~~~~iv~~G~I~~Lv~lL-~~~~~~~v~~~Al~aL~NLa~~~~~r~~I~~~G~I~~Lv 436 (600)
+.++.....|+.||-.+...++.|..++.++|+..++.++ .+..+-.++...+.|+|-|+.+|.....+...+.|+.|.
T Consensus 168 ~~~~~~~~~~~rcLQ~ll~~~eyR~~~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn~~~ae~~~~~~li~~L~ 247 (442)
T KOG2759|consen 168 STNNDYIQFAARCLQTLLRVDEYRYAFVIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFNPHAAEKLKRFDLIQDLS 247 (442)
T ss_pred cCCCchHHHHHHHHHHHhcCcchhheeeecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcCHHHHHHHhhccHHHHHH
Confidence 4778888999999999999999999999999999999999 545677899999999999999998888887789999999
Q ss_pred hhhccCCCHHHHHHHHHHHHHHhCCc-------hhHHHHHHcChHHHHHHHHc--CCCHHHHH-----------------
Q 007520 437 KTASKTDDPQTLRMVAGALANLCGNE-------KLHTMLEEDGAIKALLAMVR--SGNIDVIA----------------- 490 (600)
Q Consensus 437 ~lL~~~~~~~v~~~Aa~aL~nLa~~~-------e~r~~i~~~G~i~~Lv~lL~--s~~~~v~~----------------- 490 (600)
.++..+....|.+-++.+++|++... +....++..++.+.+-.+-. =.|+++..
T Consensus 248 ~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~v~k~l~~L~~rkysDEDL~~di~~L~e~L~~svq~Ls 327 (442)
T KOG2759|consen 248 DIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCKVLKTLQSLEERKYSDEDLVDDIEFLTEKLKNSVQDLS 327 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCchHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhhc
Confidence 99988777789999999999998543 23334444444333222221 12222211
Q ss_pred --------------------------------------HHHHHHHHhhcCC--chh----------hhhcchhhHHHHHh
Q 007520 491 --------------------------------------QVARGLANFAKCE--SRA----------IVQGQRKGRSHLME 520 (600)
Q Consensus 491 --------------------------------------~A~~aL~nLa~~~--~~~----------~~q~~~~~r~~l~e 520 (600)
..++.|..+-..+ |.. ..+-.|.|+..+.+
T Consensus 328 SFDeY~sEl~sG~L~WSP~Hk~e~FW~eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k 407 (442)
T KOG2759|consen 328 SFDEYKSELRSGRLEWSPVHKSEKFWRENADRLNENNYELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEK 407 (442)
T ss_pred cHHHHHHHHHhCCcCCCccccccchHHHhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHH
Confidence 1222222221111 110 01123789999999
Q ss_pred CCcHHHHHHhhcCCCHHHHHHHHHHHHHhh
Q 007520 521 DSALEWLIANSKTNSASTRRHVELALCHLA 550 (600)
Q Consensus 521 ~g~l~~Lv~Ll~s~~~~v~~~Aa~aL~nLa 550 (600)
.||=+.++++++++|+.|+.+|..|+..|-
T Consensus 408 ~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm 437 (442)
T KOG2759|consen 408 YGGKERVMNLLNHEDPEVRYHALLAVQKLM 437 (442)
T ss_pred hchHHHHHHHhcCCCchHHHHHHHHHHHHH
Confidence 999999999999999999999999998774
No 44
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=98.48 E-value=2.3e-06 Score=77.34 Aligned_cols=131 Identities=19% Similarity=0.186 Sum_probs=108.6
Q ss_pred HHHHHHhh-CCCCHHHHHHHHHHHHHhhCCcchHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcCCccHHHHH
Q 007520 349 LPKILQLL-TSEDPDVQIHAVKVVANLAAEDINQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMNEMNQGLIM 427 (600)
Q Consensus 349 V~~Lv~LL-~s~~~~vr~~Aa~aL~nLa~~~~~~~~iv~~G~I~~Lv~lL~~~~~~~v~~~Al~aL~NLa~~~~~r~~I~ 427 (600)
++.|+.-. ...+.+.++....-|+|.+.+|.|-..+.+.+++...+..|. .++..+...+.+.|+|+|.++.|...|.
T Consensus 18 lq~LV~efq~tt~~eakeqv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~-e~ne~LvefgIgglCNlC~d~~n~~~I~ 96 (173)
T KOG4646|consen 18 LQHLVDEFQTTTNIEAKEQVTANLANFAYDPINYSHLRQLDVLDLFVDSLE-EQNELLVEFGIGGLCNLCLDKTNAKFIR 96 (173)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhccCcchHHHHHHhhHHHHHHHHhh-cccHHHHHHhHHHHHhhccChHHHHHHH
Confidence 55566333 467888999999999999999999999999999999999998 7788899999999999999999999999
Q ss_pred HhCchhhhHhhhccCCCHHHHHHHHHHHHHHhCC-chhHHHHHHcChHHHHHHHH
Q 007520 428 SRGGGQLLAKTASKTDDPQTLRMVAGALANLCGN-EKLHTMLEEDGAIKALLAMV 481 (600)
Q Consensus 428 ~~G~I~~Lv~lL~~~~~~~v~~~Aa~aL~nLa~~-~e~r~~i~~~G~i~~Lv~lL 481 (600)
+.+|+|.++..+++ +...+...|+.++..|+.. ...+..+....++..+..+-
T Consensus 97 ea~g~plii~~lss-p~e~tv~sa~~~l~~l~~~~Rt~r~ell~p~Vv~~v~r~~ 150 (173)
T KOG4646|consen 97 EALGLPLIIFVLSS-PPEITVHSAALFLQLLEFGERTERDELLSPAVVRTVQRWR 150 (173)
T ss_pred HhcCCceEEeecCC-ChHHHHHHHHHHHHHhcCcccchhHHhccHHHHHHHHHHH
Confidence 99999999999954 5557888999999999854 56677776655555554443
No 45
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.44 E-value=4.5e-06 Score=94.10 Aligned_cols=216 Identities=18% Similarity=0.161 Sum_probs=164.8
Q ss_pred HHHHHHhhCCC-CHHHHHHHHHHHHH-hhC-CcchHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcC-CccHH
Q 007520 349 LPKILQLLTSE-DPDVQIHAVKVVAN-LAA-EDINQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMN-EMNQG 424 (600)
Q Consensus 349 V~~Lv~LL~s~-~~~vr~~Aa~aL~n-La~-~~~~~~~iv~~G~I~~Lv~lL~~~~~~~v~~~Al~aL~NLa~~-~~~r~ 424 (600)
+..|+.-|... ++..+-.|+.-|+. |+. +++.-..|.-.-.+|.|+.+|+.-.+.++.-.||+||++|+.. |.-..
T Consensus 169 ~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a 248 (1051)
T KOG0168|consen 169 AKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSA 248 (1051)
T ss_pred HHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhh
Confidence 55555555444 66666666666653 444 4444333433347999999999778899999999999999987 99999
Q ss_pred HHHHhCchhhhHhhhccCCCHHHHHHHHHHHHHHhCCchhHHHHHHcChHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCc
Q 007520 425 LIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLCGNEKLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFAKCES 504 (600)
Q Consensus 425 ~I~~~G~I~~Lv~lL~~~~~~~v~~~Aa~aL~nLa~~~e~r~~i~~~G~i~~Lv~lL~s~~~~v~~~A~~aL~nLa~~~~ 504 (600)
.+++.++||.|+.-|..-...++.+.++.+|-.|+.... ..+...|++.+.+.+++--...+++.|+.+.+|+|..-+
T Consensus 249 ~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~--~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~ 326 (1051)
T KOG0168|consen 249 IVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHP--KAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIR 326 (1051)
T ss_pred eeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcc--HHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 999999999998777555677899999999998886532 256789999999999998888999999999999987521
Q ss_pred hhhhhcchhhHHHHHhCCcHHHHHHhhcCCCHHHHHHHHHHHHHhhc----CchhHHHHHHcccHHHHHHhhhcC
Q 007520 505 RAIVQGQRKGRSHLMEDSALEWLIANSKTNSASTRRHVELALCHLAQ----NEDNARDFISRGGAKELVQISIES 575 (600)
Q Consensus 505 ~~~~q~~~~~r~~l~e~g~l~~Lv~Ll~s~~~~v~~~Aa~aL~nLa~----~~~~~~~lv~~G~l~~Lv~ll~~~ 575 (600)
++.=..++ .++|.|..++...|..+.+.++.+++.++. +++.-+.+...|.+.....++.-.
T Consensus 327 -------sd~f~~v~--ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt 392 (1051)
T KOG0168|consen 327 -------SDEFHFVM--EALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVT 392 (1051)
T ss_pred -------CccchHHH--HHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcC
Confidence 11112233 489999999999999999999998888853 455667777788887777776543
No 46
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.42 E-value=1.1e-05 Score=91.06 Aligned_cols=230 Identities=14% Similarity=0.118 Sum_probs=175.5
Q ss_pred CchhHHHHHhcCCHHHHHHhhC-CCCHHHHHHHHHHHHHhhC-CcchHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHH
Q 007520 336 QRATIAKICDEVGLPKILQLLT-SEDPDVQIHAVKVVANLAA-EDINQEKIVEEGGLDALLLLLRTSQNTTILRVASGAI 413 (600)
Q Consensus 336 ~~~~~~~i~e~GgV~~Lv~LL~-s~~~~vr~~Aa~aL~nLa~-~~~~~~~iv~~G~I~~Lv~lL~~~~~~~v~~~Al~aL 413 (600)
+.+...-|--.-.||.|+.+|+ ..+.++.-.||.||.+|+. .|.....+|..++||.|+.-|..-...++.+.++.||
T Consensus 200 nEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqAL 279 (1051)
T KOG0168|consen 200 NEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQAL 279 (1051)
T ss_pred chhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhheeecccchHHHHHhhhhhhhhHHHHHHHHHH
Confidence 4444443333345899999997 4579999999999999997 8999999999999999998887677788999999999
Q ss_pred HHhhcCCccHHHHHHhCchhhhHhhhccCCCHHHHHHHHHHHHHHhCC--chhHHHHHHcChHHHHHHHHcCCCHHHHHH
Q 007520 414 ANLAMNEMNQGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLCGN--EKLHTMLEEDGAIKALLAMVRSGNIDVIAQ 491 (600)
Q Consensus 414 ~NLa~~~~~r~~I~~~G~I~~Lv~lL~~~~~~~v~~~Aa~aL~nLa~~--~e~r~~i~~~G~i~~Lv~lL~s~~~~v~~~ 491 (600)
-.|++. .-.+|..+|++...+..|. .-+..+++.|+.+.+|+|.. ++--..++ .++|.|..+|...+..+.+.
T Consensus 280 E~iSR~--H~~AiL~AG~l~a~LsylD-FFSi~aQR~AlaiaaN~Cksi~sd~f~~v~--ealPlL~~lLs~~D~k~ies 354 (1051)
T KOG0168|consen 280 EKISRR--HPKAILQAGALSAVLSYLD-FFSIHAQRVALAIAANCCKSIRSDEFHFVM--EALPLLTPLLSYQDKKPIES 354 (1051)
T ss_pred HHHHhh--ccHHHHhcccHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCCccchHHH--HHHHHHHHHHhhccchhHHH
Confidence 999875 3468899999999888883 34568899999999999943 23223333 38899999999888888888
Q ss_pred HHHHHHHhhcCCchhhhhcchhhHHHHHhCCcHHHHHHhhcCCC----HHHHHHHHHHHHHhhcC-chhHHHHHHcccHH
Q 007520 492 VARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSKTNS----ASTRRHVELALCHLAQN-EDNARDFISRGGAK 566 (600)
Q Consensus 492 A~~aL~nLa~~~~~~~~q~~~~~r~~l~e~g~l~~Lv~Ll~s~~----~~v~~~Aa~aL~nLa~~-~~~~~~lv~~G~l~ 566 (600)
++-++..++-.-.. .++.=+.+...|.|.....++.-.+ ..+.......|..||.+ +.....+...+...
T Consensus 355 ~~ic~~ri~d~f~h-----~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~vIrmls~msS~~pl~~~tl~k~~I~~ 429 (1051)
T KOG0168|consen 355 VCICLTRIADGFQH-----GPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTGVIRMLSLMSSGSPLLFRTLLKLDIAD 429 (1051)
T ss_pred HHHHHHHHHHhccc-----ChHHHHHHhchhHHHHHHHHHhcCcccccccchhHHHHHHHHHccCChHHHHHHHHhhHHH
Confidence 88888888632110 1333345667899998888876553 33455667777888776 66778888889999
Q ss_pred HHHHhhhcC
Q 007520 567 ELVQISIES 575 (600)
Q Consensus 567 ~Lv~ll~~~ 575 (600)
.|..++...
T Consensus 430 ~L~~il~g~ 438 (1051)
T KOG0168|consen 430 TLKRILQGY 438 (1051)
T ss_pred HHHHHHhcc
Confidence 999988643
No 47
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=98.30 E-value=9.4e-06 Score=89.71 Aligned_cols=150 Identities=12% Similarity=0.096 Sum_probs=122.1
Q ss_pred HHccCCCHHHHHHHHHHHHHhhcC-CccHHHHHHhCchhhhHhhhccCCCHHHHHHHHHHHHHHhC-CchhHHHHHHcCh
Q 007520 396 LLRTSQNTTILRVASGAIANLAMN-EMNQGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLCG-NEKLHTMLEEDGA 473 (600)
Q Consensus 396 lL~~~~~~~v~~~Al~aL~NLa~~-~~~r~~I~~~G~I~~Lv~lL~~~~~~~v~~~Aa~aL~nLa~-~~e~r~~i~~~G~ 473 (600)
.+....|.....+|+.++.++++. ...+.-..+..++.+|++++.. ++..+...++++|+||.. ..+.+..|+..||
T Consensus 384 ~~~~~kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~d-p~~~i~~~~lgai~NlVmefs~~kskfl~~ng 462 (678)
T KOG1293|consen 384 CLPPIKDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMD-PEIMIMGITLGAICNLVMEFSNLKSKFLRNNG 462 (678)
T ss_pred cccccccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhC-cchhHHHHHHHHHHHHHhhcccHHHHHHHcCc
Confidence 333356788888999999999987 5556666668899999999954 666788889999999974 4789999999999
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchhhhhcchhhHHHHHhCCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCc
Q 007520 474 IKALLAMVRSGNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSKTNSASTRRHVELALCHLAQNE 553 (600)
Q Consensus 474 i~~Lv~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~q~~~~~r~~l~e~g~l~~Lv~Ll~s~~~~v~~~Aa~aL~nLa~~~ 553 (600)
|..+..++.+.++.++..+.|+|+++...+.+ .-+..+...=+...|+.++++++.+|++.+...|+||..+.
T Consensus 463 Id~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de-------~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~~ 535 (678)
T KOG1293|consen 463 IDILESMLTDPDFNSRANSLWVLRHLMFNCDE-------EEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCNS 535 (678)
T ss_pred HHHHHHHhcCCCchHHHHHHHHHHHHHhcchH-------HHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcCc
Confidence 99999999999999999999999999977532 22233333345567788999999999999999999997664
No 48
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=98.24 E-value=3.8e-05 Score=86.03 Aligned_cols=216 Identities=17% Similarity=0.192 Sum_probs=136.0
Q ss_pred chHHHhcccCCCCccccchHHHHhhc--CchhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhC-CcchHHHHHH
Q 007520 310 YISKGSSRFGAPMSLQKSNPSRELSG--QRATIAKICDEVGLPKILQLLTSEDPDVQIHAVKVVANLAA-EDINQEKIVE 386 (600)
Q Consensus 310 ~i~~Lv~~L~s~~~~~r~~a~~~L~~--~~~~~~~i~e~GgV~~Lv~LL~s~~~~vr~~Aa~aL~nLa~-~~~~~~~iv~ 386 (600)
++..+..-+.++++..+..|++.++. +++... -.++.+..++.++++.||..|+.++..+.. +|+.- ..
T Consensus 80 ~~n~l~kdl~~~n~~~~~lAL~~l~~i~~~~~~~-----~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~---~~ 151 (526)
T PF01602_consen 80 IINSLQKDLNSPNPYIRGLALRTLSNIRTPEMAE-----PLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDLV---ED 151 (526)
T ss_dssp HHHHHHHHHCSSSHHHHHHHHHHHHHH-SHHHHH-----HHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCH---HG
T ss_pred HHHHHHHhhcCCCHHHHHHHHhhhhhhcccchhh-----HHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHHH---HH
Confidence 34555566667777777777777332 222222 136777888999999999999999999886 44432 11
Q ss_pred cCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcCCccHHHHHHhCchhhhHhhhccCCCHHHHHHHHHHHHHHhCCchhHH
Q 007520 387 EGGLDALLLLLRTSQNTTILRVASGAIANLAMNEMNQGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLCGNEKLHT 466 (600)
Q Consensus 387 ~G~I~~Lv~lL~~~~~~~v~~~Al~aL~NLa~~~~~r~~I~~~G~I~~Lv~lL~~~~~~~v~~~Aa~aL~nLa~~~e~r~ 466 (600)
. .++.+..+|. ++++.+...|+.++..+..++.....+. ...++.|..++ ...+|-.+..++.+|..++.......
T Consensus 152 ~-~~~~l~~lL~-d~~~~V~~~a~~~l~~i~~~~~~~~~~~-~~~~~~L~~~l-~~~~~~~q~~il~~l~~~~~~~~~~~ 227 (526)
T PF01602_consen 152 E-LIPKLKQLLS-DKDPSVVSAALSLLSEIKCNDDSYKSLI-PKLIRILCQLL-SDPDPWLQIKILRLLRRYAPMEPEDA 227 (526)
T ss_dssp G-HHHHHHHHTT-HSSHHHHHHHHHHHHHHHCTHHHHTTHH-HHHHHHHHHHH-TCCSHHHHHHHHHHHTTSTSSSHHHH
T ss_pred H-HHHHHhhhcc-CCcchhHHHHHHHHHHHccCcchhhhhH-HHHHHHhhhcc-cccchHHHHHHHHHHHhcccCChhhh
Confidence 1 4788888886 7788999999999999921211111111 12334444444 34677777777777777765432211
Q ss_pred HHHHcChHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchhhhhcchhhHHHHHhCCcHHHHHHhhcCCCHHHHHHHHHHH
Q 007520 467 MLEEDGAIKALLAMVRSGNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSKTNSASTRRHVELAL 546 (600)
Q Consensus 467 ~i~~~G~i~~Lv~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~q~~~~~r~~l~e~g~l~~Lv~Ll~s~~~~v~~~Aa~aL 546 (600)
. ....++.+..++.+.++.|...|+.++..+.... . .-..+++.|+.++.+.++.++..++.+|
T Consensus 228 ~--~~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~---------~-----~~~~~~~~L~~lL~s~~~nvr~~~L~~L 291 (526)
T PF01602_consen 228 D--KNRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSP---------E-----LLQKAINPLIKLLSSSDPNVRYIALDSL 291 (526)
T ss_dssp H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSH---------H-----HHHHHHHHHHHHHTSSSHHHHHHHHHHH
T ss_pred h--HHHHHHHHHHHhhccccHHHHHHHHHHHHhhcch---------H-----HHHhhHHHHHHHhhcccchhehhHHHHH
Confidence 0 0346666777777777777777777777766431 0 1234667777777777777777777777
Q ss_pred HHhhcCc
Q 007520 547 CHLAQNE 553 (600)
Q Consensus 547 ~nLa~~~ 553 (600)
..++...
T Consensus 292 ~~l~~~~ 298 (526)
T PF01602_consen 292 SQLAQSN 298 (526)
T ss_dssp HHHCCHC
T ss_pred HHhhccc
Confidence 7775543
No 49
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=98.23 E-value=1.1e-05 Score=89.09 Aligned_cols=144 Identities=17% Similarity=0.183 Sum_probs=116.1
Q ss_pred CCCCHHHHHHHHHHHHHhhC-CcchHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcC-CccHHHHHHhCchhh
Q 007520 357 TSEDPDVQIHAVKVVANLAA-EDINQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMN-EMNQGLIMSRGGGQL 434 (600)
Q Consensus 357 ~s~~~~vr~~Aa~aL~nLa~-~~~~~~~iv~~G~I~~Lv~lL~~~~~~~v~~~Al~aL~NLa~~-~~~r~~I~~~G~I~~ 434 (600)
...|..++.+|+-++.+++. -..-+..+-...++.+|++++. +|+..+...++++|+||... .+.+..+++.|||..
T Consensus 387 ~~kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~-dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~ 465 (678)
T KOG1293|consen 387 PIKDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLM-DPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDI 465 (678)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhh-CcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHH
Confidence 35678888888888888775 2333444666778999999997 77888999999999999988 889999999999999
Q ss_pred hHhhhccCCCHHHHHHHHHHHHHHhCCchhHHHH--HHcChHHHHHHHHcCCCHHHHHHHHHHHHHhhcCC
Q 007520 435 LAKTASKTDDPQTLRMVAGALANLCGNEKLHTML--EEDGAIKALLAMVRSGNIDVIAQVARGLANFAKCE 503 (600)
Q Consensus 435 Lv~lL~~~~~~~v~~~Aa~aL~nLa~~~e~r~~i--~~~G~i~~Lv~lL~s~~~~v~~~A~~aL~nLa~~~ 503 (600)
+..++.. .++.++..+.|+|+++..+.+....+ ...=....++.+..+++.+|+++|...|+||+ |+
T Consensus 466 l~s~~~~-~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~-c~ 534 (678)
T KOG1293|consen 466 LESMLTD-PDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLT-CN 534 (678)
T ss_pred HHHHhcC-CCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhh-cC
Confidence 9999964 78899999999999999765443332 22223345667778999999999999999998 54
No 50
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.22 E-value=4.2e-05 Score=78.04 Aligned_cols=208 Identities=21% Similarity=0.205 Sum_probs=146.2
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHhhCCcchHHHHH-HcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcCCccHHHHH
Q 007520 349 LPKILQLLTSEDPDVQIHAVKVVANLAAEDINQEKIV-EEGGLDALLLLLRTSQNTTILRVASGAIANLAMNEMNQGLIM 427 (600)
Q Consensus 349 V~~Lv~LL~s~~~~vr~~Aa~aL~nLa~~~~~~~~iv-~~G~I~~Lv~lL~~~~~~~v~~~Al~aL~NLa~~~~~r~~I~ 427 (600)
.-.++.++.+.++.|+..|+..|.+++.. +.+.... +.-.++.+..++... ++ .+.|+.+|.|++..+..+..++
T Consensus 5 l~elv~ll~~~sP~v~~~AV~~l~~lt~~-~~~~~~~~~~~~lk~l~qL~~~~-~~--~~~a~~alVnlsq~~~l~~~ll 80 (353)
T KOG2973|consen 5 LVELVELLHSLSPPVRKAAVEHLLGLTGR-GLQSLSKYSEALLKDLTQLLKDL-DP--AEPAATALVNLSQKEELRKKLL 80 (353)
T ss_pred HHHHHHHhccCChHHHHHHHHHHhhcccc-chhhhccchhhhHHHHHHHccCc-cc--ccHHHHHHHHHHhhHHHHHHHH
Confidence 34578999999999999999999999887 3333222 233477788888733 33 5668999999999999999999
Q ss_pred HhCchhhhHhhhccCCCHHHHHHHHHHHHHHhCCchhHHHHHH-------cChHHHHHHHHc-CCCHHH-HHHHHHHHHH
Q 007520 428 SRGGGQLLAKTASKTDDPQTLRMVAGALANLCGNEKLHTMLEE-------DGAIKALLAMVR-SGNIDV-IAQVARGLAN 498 (600)
Q Consensus 428 ~~G~I~~Lv~lL~~~~~~~v~~~Aa~aL~nLa~~~e~r~~i~~-------~G~i~~Lv~lL~-s~~~~v-~~~A~~aL~n 498 (600)
.. .+..++.++.+ +.......+|.+|+||+.+++....+.. .|.+.....+.+ +.+... ....+..++|
T Consensus 81 ~~-~~k~l~~~~~~-p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~n 158 (353)
T KOG2973|consen 81 QD-LLKVLMDMLTD-PQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFAN 158 (353)
T ss_pred HH-HHHHHHHHhcC-cccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHHHH
Confidence 88 77788888855 3346778889999999998877665532 344444444444 333222 3457888999
Q ss_pred hhcCCchhhhhcchhhHHHHHhCCcHH--HHHHhhcCCCHHHHH-HHHHHHHHhhcCchhHHHHHHcccHHHHHHhhh
Q 007520 499 FAKCESRAIVQGQRKGRSHLMEDSALE--WLIANSKTNSASTRR-HVELALCHLAQNEDNARDFISRGGAKELVQISI 573 (600)
Q Consensus 499 La~~~~~~~~q~~~~~r~~l~e~g~l~--~Lv~Ll~s~~~~v~~-~Aa~aL~nLa~~~~~~~~lv~~G~l~~Lv~ll~ 573 (600)
|+.. +.+|..+.+...++ .|+.+-. .+..+|+ ..+++|.|+|.+..+...+.. ..+..|.-++.
T Consensus 159 ls~~---------~~gR~l~~~~k~~p~~kll~ft~-~~s~vRr~GvagtlkN~cFd~~~h~~lL~-e~~~lLp~iLl 225 (353)
T KOG2973|consen 159 LSQF---------EAGRKLLLEPKRFPDQKLLPFTS-EDSQVRRGGVAGTLKNCCFDAKLHEVLLD-ESINLLPAILL 225 (353)
T ss_pred Hhhh---------hhhhhHhcchhhhhHhhhhcccc-cchhhhccchHHHHHhhhccchhHHHHhc-chHHHHHHHHh
Confidence 9866 56888888766443 3333333 5555654 578999999999998888887 44455555543
No 51
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=98.22 E-value=0.002 Score=67.64 Aligned_cols=197 Identities=19% Similarity=0.226 Sum_probs=117.5
Q ss_pred HHHHHhhhccHHHHHHHHHHHHHHHHHHhh---hHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHhhhHHHHHH---
Q 007520 34 ERKQKLRENDKCELEKLLRECQISYDEAKD---NLVTQVELLTAKIEMQQKLRENDKYEFEKQLRESQISYDESMRN--- 107 (600)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 107 (600)
.+-...++.+-.++.+.+.++....+.++- ++..+++.++.+|+.....+ ..++.++...+.++++....
T Consensus 46 ~~~~~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~~~~----~~le~el~~lrk~ld~~~~~r~~ 121 (312)
T PF00038_consen 46 SRIKEMYEEELRELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEELAER----KDLEEELESLRKDLDEETLARVD 121 (312)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHH----HHHHHHHhhhhhhhhhhhhhHhH
Confidence 334444565555666666666655555543 44668888999999998888 88999888888877765433
Q ss_pred HHHhHHHHHHHhhhH----HHHHHHHHhhhhhhhhhhhhHH-HHHHHHHHhhhhhhhhh-hhhhHHhhhhhhhhhhhHHH
Q 007520 108 LVTRSEFLEKENAHL----ELEVEKILGELNHQKDQNNLKR-EKIVQLEISLKNSKQYE-MENSTYQKALADTTQLYEKK 181 (600)
Q Consensus 108 l~~~~~~~~~e~~~~----~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~n~~~~~~l~~~~~~~~~~ 181 (600)
|+.+++.|..|...+ +.|++.|...+. .+....+. .....|...|+.+..++ .....+ -.+.-..|..+
T Consensus 122 le~~i~~L~eEl~fl~~~heeEi~~L~~~~~--~~~~~e~~~~~~~dL~~~L~eiR~~ye~~~~~~---~~e~e~~y~~k 196 (312)
T PF00038_consen 122 LENQIQSLKEELEFLKQNHEEEIEELREQIQ--SSVTVEVDQFRSSDLSAALREIRAQYEEIAQKN---REELEEWYQSK 196 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSTT------------------HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhhhccc--cccceeecccccccchhhhhhHHHHHHHHHhhh---hhhhhhhcccc
Confidence 666666666655444 346666665554 11112211 22344566666666444 222222 24567888889
Q ss_pred HHHHHHHhHhHHHhhhhhHHHHHHHHHHHhhhhhcccchh-hHHHHHHHHHHHHHHHHH
Q 007520 182 IAELNKKLEDEHACFEGAVEQLDMVKKLLSDYQNSNQGQK-EVHELCVKLKETRQLHES 239 (600)
Q Consensus 182 ~~~l~~~l~~e~~~~~~~~~~~~~~~~~~~~~q~~~~~~~-e~~~l~~~~~d~~~~~e~ 239 (600)
+.+++............+.+++..+++.+..++.-..+.. ....|+..+.++...+..
T Consensus 197 ~~~l~~~~~~~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~ 255 (312)
T PF00038_consen 197 LEELRQQSEKSSEELESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLDE 255 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHH
Confidence 9999888877777777788888777776665554433222 345666666666655554
No 52
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=98.11 E-value=0.0042 Score=77.88 Aligned_cols=227 Identities=17% Similarity=0.183 Sum_probs=125.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhHH---HHHHHHHHHHHHHHHhhhchhHHHHHHHHH---HHhhhHHHHHHHHHhHHHHHHH
Q 007520 45 CELEKLLRECQISYDEAKDNLV---TQVELLTAKIEMQQKLRENDKYEFEKQLRE---SQISYDESMRNLVTRSEFLEKE 118 (600)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~e 118 (600)
.++++.+.+-...+.+++..+. .+|++|+-.+.. ...+-..|-+|... ...++...+...+.+...+.|-
T Consensus 939 ~~l~~~~~~~E~~~~k~~~Ek~~~e~~~~~l~~e~~~----~~e~~~kL~kekk~lEe~~~~l~~~l~~~eek~~~l~k~ 1014 (1930)
T KOG0161|consen 939 QELKEQLEELELTLQKLELEKNAAENKLKNLEEEINS----LDENISKLSKEKKELEERIRELQDDLQAEEEKAKSLNKA 1014 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444432 234444444433 22222344443333 3345666667777778888888
Q ss_pred hhhHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHhhhhhhhhhhhhhHHhhhhhhhhhhhHHHHHHHHHHhHhHHHhhhh
Q 007520 119 NAHLELEVEKILGELNHQKDQNNLKREKIVQLEISLKNSKQYEMENSTYQKALADTTQLYEKKIAELNKKLEDEHACFEG 198 (600)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~l~~~l~~e~~~~~~ 198 (600)
+.+|+..++++...+++++....+.-....-++.+|+..+....+=......|...-..-+.++..++-.++++.+....
T Consensus 1015 ~~kle~~l~~le~~le~e~~~r~e~Ek~~rkle~el~~~~e~~~~~~~~~~el~~~l~kke~El~~l~~k~e~e~~~~~~ 1094 (1930)
T KOG0161|consen 1015 KAKLEQQLDDLEVTLEREKRIRMELEKAKRKLEGELKDLQESIEELKKQKEELDNQLKKKESELSQLQSKLEDEQAEVAQ 1094 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 88888888888888888888888877777778888744443333222222233334444455555556666666666555
Q ss_pred hHHHHHHHHHHHhhhhhcc-cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHhhhHH
Q 007520 199 AVEQLDMVKKLLSDYQNSN-QGQKEVHELCVKLKETRQLHESAVYEVQTLKSEYKNLLEEKETMSDELQAARQRLLVE 275 (600)
Q Consensus 199 ~~~~~~~~~~~~~~~q~~~-~~~~e~~~l~~~~~d~~~~~e~~~~el~~l~~~~~~l~~~~~~~~~el~~~~~~l~~e 275 (600)
.+.++..+..-+.+++..- ..-+-...++....|+.++++.+..++.+.-+..............++.++++.+.++
T Consensus 1095 l~k~i~eL~~~i~el~e~le~er~~r~K~ek~r~dL~~ele~l~~~Lee~~~~t~~q~e~~~k~e~e~~~l~~~leee 1172 (1930)
T KOG0161|consen 1095 LQKQIKELEARIKELEEELEAERASRAKAERQRRDLSEELEELKEELEEQGGTTAAQLELNKKREAEVQKLRRDLEEE 1172 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555443322 1222336677777777777777777755553333222333344455666666555543
No 53
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=98.11 E-value=0.00011 Score=78.00 Aligned_cols=238 Identities=17% Similarity=0.090 Sum_probs=177.1
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHhhCCcchHHHHHHcC-CHHHHHHHHccCCCHHHHHHHHHHHHHhhcCCccHHHHH
Q 007520 349 LPKILQLLTSEDPDVQIHAVKVVANLAAEDINQEKIVEEG-GLDALLLLLRTSQNTTILRVASGAIANLAMNEMNQGLIM 427 (600)
Q Consensus 349 V~~Lv~LL~s~~~~vr~~Aa~aL~nLa~~~~~~~~iv~~G-~I~~Lv~lL~~~~~~~v~~~Al~aL~NLa~~~~~r~~I~ 427 (600)
..+.+.+|...+.-+...+..++..++.+........+.. ....|-.++.++.+......|++||..+...++.|..++
T Consensus 116 ~~~fl~ll~r~d~~iv~~~~~Ils~la~~g~~~~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~eyR~~~v 195 (442)
T KOG2759|consen 116 WLSFLNLLNRQDTFIVEMSFRILSKLACFGNCKMELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRVDEYRYAFV 195 (442)
T ss_pred hHHHHHHHhcCChHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcCcchhheee
Confidence 6778899999998888888999998886433321111111 123344556655666778889999999999999999999
Q ss_pred HhCchhhhHhhh-ccCCCHHHHHHHHHHHHHHhCCchhHHHHHHcChHHHHHHHHc-CCCHHHHHHHHHHHHHhhcCCch
Q 007520 428 SRGGGQLLAKTA-SKTDDPQTLRMVAGALANLCGNEKLHTMLEEDGAIKALLAMVR-SGNIDVIAQVARGLANFAKCESR 505 (600)
Q Consensus 428 ~~G~I~~Lv~lL-~~~~~~~v~~~Aa~aL~nLa~~~e~r~~i~~~G~i~~Lv~lL~-s~~~~v~~~A~~aL~nLa~~~~~ 505 (600)
..+|+..++..+ +...+.+++...+.++|-|+.++.....+...+.++.|..+++ +....|.+-++.+++|+....++
T Consensus 196 ~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn~~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~ 275 (442)
T KOG2759|consen 196 IADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFNPHAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPD 275 (442)
T ss_pred ecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcCHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCch
Confidence 999999999988 5556778999999999999999999988888899999999996 56678999999999999876642
Q ss_pred h------hhh---cc---------------------------------------------------------------hh
Q 007520 506 A------IVQ---GQ---------------------------------------------------------------RK 513 (600)
Q Consensus 506 ~------~~q---~~---------------------------------------------------------------~~ 513 (600)
. ..+ ++ .+
T Consensus 276 ~~~~k~~~~~mv~~~v~k~l~~L~~rkysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~e 355 (442)
T KOG2759|consen 276 RETKKDIASQMVLCKVLKTLQSLEERKYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKFWRE 355 (442)
T ss_pred hhHHHHHHHHHHhcCchHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccchHHH
Confidence 1 100 00 11
Q ss_pred hHHHHHh--CCcHHHHHHhhcCC-CHHHHHHHHHHHHHhhc-CchhHHHHHHcccHHHHHHhhhcCChHHHHHHHHHH
Q 007520 514 GRSHLME--DSALEWLIANSKTN-SASTRRHVELALCHLAQ-NEDNARDFISRGGAKELVQISIESSREDIRNLAKKT 587 (600)
Q Consensus 514 ~r~~l~e--~g~l~~Lv~Ll~s~-~~~v~~~Aa~aL~nLa~-~~~~~~~lv~~G~l~~Lv~ll~~~~~~~ir~~A~~~ 587 (600)
+-..+.+ ...+..|+.++... ||.+-.-||.=+..... .|+.+..+..-||=..+++++.+++ +++|=.|..+
T Consensus 356 Na~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~d-~~Vry~ALla 432 (442)
T KOG2759|consen 356 NADRLNENNYELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHED-PEVRYHALLA 432 (442)
T ss_pred hHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCCC-chHHHHHHHH
Confidence 2233333 23567778877765 47777778888888865 6777777888999999999998876 5677665533
No 54
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=98.10 E-value=7e-05 Score=83.95 Aligned_cols=245 Identities=18% Similarity=0.169 Sum_probs=159.8
Q ss_pred cCchHHHhcccCCCCccccchHHHH-hh---cCchhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCcchHHH
Q 007520 308 KDYISKGSSRFGAPMSLQKSNPSRE-LS---GQRATIAKICDEVGLPKILQLLTSEDPDVQIHAVKVVANLAAEDINQEK 383 (600)
Q Consensus 308 ~g~i~~Lv~~L~s~~~~~r~~a~~~-L~---~~~~~~~~i~e~GgV~~Lv~LL~s~~~~vr~~Aa~aL~nLa~~~~~~~~ 383 (600)
...++.+...+.++.+.+|..|+.+ +. .+++... .. -++.+..+|.+.++.|+..|+.++..+..++.....
T Consensus 113 ~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~---~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i~~~~~~~~~ 188 (526)
T PF01602_consen 113 EPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDLVE---DE-LIPKLKQLLSDKDPSVVSAALSLLSEIKCNDDSYKS 188 (526)
T ss_dssp HHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCHH---GG-HHHHHHHHTTHSSHHHHHHHHHHHHHHHCTHHHHTT
T ss_pred hHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHHHH---HH-HHHHHhhhccCCcchhHHHHHHHHHHHccCcchhhh
Confidence 3456677778888888888877765 22 2333222 22 478888999999999999999999998222221111
Q ss_pred HHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcCCccHHHHHHhCchhhhHhhhccCCCHHHHHHHHHHHHHHhCCch
Q 007520 384 IVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMNEMNQGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLCGNEK 463 (600)
Q Consensus 384 iv~~G~I~~Lv~lL~~~~~~~v~~~Al~aL~NLa~~~~~r~~I~~~G~I~~Lv~lL~~~~~~~v~~~Aa~aL~nLa~~~e 463 (600)
+... .++.|..++. .+++-++..++.+|..++........- ...++.+..++. +.++.+.-.++.++..+...+.
T Consensus 189 ~~~~-~~~~L~~~l~-~~~~~~q~~il~~l~~~~~~~~~~~~~--~~~i~~l~~~l~-s~~~~V~~e~~~~i~~l~~~~~ 263 (526)
T PF01602_consen 189 LIPK-LIRILCQLLS-DPDPWLQIKILRLLRRYAPMEPEDADK--NRIIEPLLNLLQ-SSSPSVVYEAIRLIIKLSPSPE 263 (526)
T ss_dssp HHHH-HHHHHHHHHT-CCSHHHHHHHHHHHTTSTSSSHHHHHH--HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHSSSHH
T ss_pred hHHH-HHHHhhhccc-ccchHHHHHHHHHHHhcccCChhhhhH--HHHHHHHHHHhh-ccccHHHHHHHHHHHHhhcchH
Confidence 1111 2344444443 778888888999999887763222211 446777888875 4667888899999998887766
Q ss_pred hHHHHHHcChHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchhhhhcchhhHHHHHhCCcHHHHHHhhcCCCHHHHHHHH
Q 007520 464 LHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSKTNSASTRRHVE 543 (600)
Q Consensus 464 ~r~~i~~~G~i~~Lv~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~q~~~~~r~~l~e~g~l~~Lv~Ll~s~~~~v~~~Aa 543 (600)
.-..+++.|+.++.++++.++..++.+|..++...+. .+. ..-..+..+..+++..++..+.
T Consensus 264 -----~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~~~------------~v~-~~~~~~~~l~~~~d~~Ir~~~l 325 (526)
T PF01602_consen 264 -----LLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSNPP------------AVF-NQSLILFFLLYDDDPSIRKKAL 325 (526)
T ss_dssp -----HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHCHH------------HHG-THHHHHHHHHCSSSHHHHHHHH
T ss_pred -----HHHhhHHHHHHHhhcccchhehhHHHHHHHhhcccch------------hhh-hhhhhhheecCCCChhHHHHHH
Confidence 3346888999999999999999999999999865311 222 2222333344488999999999
Q ss_pred HHHHHhhcCchhHHHHHHcccHHHHHHhhhcCChHHHHHHHH
Q 007520 544 LALCHLAQNEDNARDFISRGGAKELVQISIESSREDIRNLAK 585 (600)
Q Consensus 544 ~aL~nLa~~~~~~~~lv~~G~l~~Lv~ll~~~~~~~ir~~A~ 585 (600)
.+|..++... +... .++.|...+...+.++++..+.
T Consensus 326 ~lL~~l~~~~-n~~~-----Il~eL~~~l~~~~d~~~~~~~i 361 (526)
T PF01602_consen 326 DLLYKLANES-NVKE-----ILDELLKYLSELSDPDFRRELI 361 (526)
T ss_dssp HHHHHH--HH-HHHH-----HHHHHHHHHHHC--HHHHHHHH
T ss_pred HHHhhccccc-chhh-----HHHHHHHHHHhccchhhhhhHH
Confidence 9999997533 3333 4556666664443343444433
No 55
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=97.99 E-value=0.01 Score=74.48 Aligned_cols=172 Identities=24% Similarity=0.296 Sum_probs=107.7
Q ss_pred HHhHHHHHHHHHHhHHHHHHHHhh---hccHHHHHHHHHHHHHHHHHHhhhH----------HHHHHHHHHHHHHHHHhh
Q 007520 17 SLCRKLETQVDHLTAEIERKQKLR---ENDKCELEKLLRECQISYDEAKDNL----------VTQVELLTAKIEMQQKLR 83 (600)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~ 83 (600)
-+|.|||.+||-+-...||+++.+ |+.+..++-.+...+.++.+.+..- .+|+..+..+++......
T Consensus 1013 k~~~kle~~l~~le~~le~e~~~r~e~Ek~~rkle~el~~~~e~~~~~~~~~~el~~~l~kke~El~~l~~k~e~e~~~~ 1092 (1930)
T KOG0161|consen 1013 KAKAKLEQQLDDLEVTLEREKRIRMELEKAKRKLEGELKDLQESIEELKKQKEELDNQLKKKESELSQLQSKLEDEQAEV 1092 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 468899999999998888888888 3334455556666666666544321 223333333333333333
Q ss_pred hchhHHHHHHHHHHHh---hhHHHHHHHHHhHHHHHHHhhhHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHhhhhhhhh
Q 007520 84 ENDKYEFEKQLRESQI---SYDESMRNLVTRSEFLEKENAHLELEVEKILGELNHQKDQNNLKREKIVQLEISLKNSKQY 160 (600)
Q Consensus 84 ~~~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (600)
..+++...+.+. +-.|++....+...-+++.+++|+.++.+|..++..+-+...-.-+.....|.++...++-
T Consensus 1093 ----~~l~k~i~eL~~~i~el~e~le~er~~r~K~ek~r~dL~~ele~l~~~Lee~~~~t~~q~e~~~k~e~e~~~l~~~ 1168 (1930)
T KOG0161|consen 1093 ----AQLQKQIKELEARIKELEEELEAERASRAKAERQRRDLSEELEELKEELEEQGGTTAAQLELNKKREAEVQKLRRD 1168 (1930)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555443 4445555556666688999999999999999999877544443333334445666665554
Q ss_pred h-hhhhHHhhhhhhhhhhhHHHHHHHHHHhHhH
Q 007520 161 E-MENSTYQKALADTTQLYEKKIAELNKKLEDE 192 (600)
Q Consensus 161 ~-~~n~~~~~~l~~~~~~~~~~~~~l~~~l~~e 192 (600)
. -+++.+...+++-.+.+...+++|..++++.
T Consensus 1169 leee~~~~e~~~~~lr~~~~~~~~el~~qle~l 1201 (1930)
T KOG0161|consen 1169 LEEETLDHEAQIEELRKKHADSLAELQEQLEQL 1201 (1930)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 6677776666666666666666666555544
No 56
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.98 E-value=0.00043 Score=78.08 Aligned_cols=214 Identities=15% Similarity=0.154 Sum_probs=162.5
Q ss_pred HHHHHHhh-CCCCHHHHHHHHHHHHHhhCCcchHHHHHHcCCHHHHHHHHcc-CCCHHHHHHHHHHHHHhhcCCc-----
Q 007520 349 LPKILQLL-TSEDPDVQIHAVKVVANLAAEDINQEKIVEEGGLDALLLLLRT-SQNTTILRVASGAIANLAMNEM----- 421 (600)
Q Consensus 349 V~~Lv~LL-~s~~~~vr~~Aa~aL~nLa~~~~~~~~iv~~G~I~~Lv~lL~~-~~~~~v~~~Al~aL~NLa~~~~----- 421 (600)
|+.|+.=+ ++.-.+-|+.|+..|-.++. ..|..+... |+++|+..|.. ..|+++...++.++.++..+++
T Consensus 24 I~kLcDRvessTL~eDRR~A~rgLKa~sr--kYR~~Vga~-Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~v~ 100 (970)
T KOG0946|consen 24 IEKLCDRVESSTLLEDRRDAVRGLKAFSR--KYREEVGAQ-GMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPEVM 100 (970)
T ss_pred HHHHHHHHhhccchhhHHHHHHHHHHHHH--HHHHHHHHc-ccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchhhc
Confidence 77777333 45567778999999988875 345555544 78999999975 4688999999999999998853
Q ss_pred -c-----------HHHHH-HhCchhhhHhhhccCCCHHHHHHHHHHHHHHh--CCchhHHHHHH-cChHHHHHHHHcCCC
Q 007520 422 -N-----------QGLIM-SRGGGQLLAKTASKTDDPQTLRMVAGALANLC--GNEKLHTMLEE-DGAIKALLAMVRSGN 485 (600)
Q Consensus 422 -~-----------r~~I~-~~G~I~~Lv~lL~~~~~~~v~~~Aa~aL~nLa--~~~e~r~~i~~-~G~i~~Lv~lL~s~~ 485 (600)
+ ...++ ..+-|..|+..+.. .|..|+..++..|.+|. ..++.+..+.. .-||..++.+|++..
T Consensus 101 dds~qsdd~g~~iae~fik~qd~I~lll~~~e~-~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~Dsr 179 (970)
T KOG0946|consen 101 DDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEE-FDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSR 179 (970)
T ss_pred ccchhhhHHHHHHHHHHHcCchhHHHHHHHHHh-hchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhh
Confidence 2 22233 25778888888854 67789999999999994 45678877665 478999999999999
Q ss_pred HHHHHHHHHHHHHhhcCCchhhhhcchhhHHHHHhCCcHHHHHHhhcCC---C-HHHHHHHHHHHHHhhc-CchhHHHHH
Q 007520 486 IDVIAQVARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSKTN---S-ASTRRHVELALCHLAQ-NEDNARDFI 560 (600)
Q Consensus 486 ~~v~~~A~~aL~nLa~~~~~~~~q~~~~~r~~l~e~g~l~~Lv~Ll~s~---~-~~v~~~Aa~aL~nLa~-~~~~~~~lv 560 (600)
..+|..|...|..|+.+++. .+..+.=.++...|+.++... | --|..-|...|-||-. +..+...+.
T Consensus 180 E~IRNe~iLlL~eL~k~n~~--------IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~Fr 251 (970)
T KOG0946|consen 180 EPIRNEAILLLSELVKDNSS--------IQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFR 251 (970)
T ss_pred hhhchhHHHHHHHHHccCch--------HHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHh
Confidence 99999999999999988643 344444467888888887653 2 2366778888888865 566888888
Q ss_pred HcccHHHHHHhhhc
Q 007520 561 SRGGAKELVQISIE 574 (600)
Q Consensus 561 ~~G~l~~Lv~ll~~ 574 (600)
+.+.+|.|..++.-
T Consensus 252 E~~~i~rL~klL~~ 265 (970)
T KOG0946|consen 252 EGSYIPRLLKLLSV 265 (970)
T ss_pred ccccHHHHHhhcCc
Confidence 88999999977753
No 57
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.84 E-value=0.021 Score=67.50 Aligned_cols=105 Identities=25% Similarity=0.242 Sum_probs=55.5
Q ss_pred hhhhhhhhhhhHHHHHHHHHHhHhHHHhhhhhHHHHHHHHHHHhhhhh-cccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 007520 168 QKALADTTQLYEKKIAELNKKLEDEHACFEGAVEQLDMVKKLLSDYQN-SNQGQKEVHELCVKLKETRQLHESAVYEVQT 246 (600)
Q Consensus 168 ~~~l~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~~~~~~~~~~~q~-~~~~~~e~~~l~~~~~d~~~~~e~~~~el~~ 246 (600)
+..+...|+...+++..+.+-+...-.....+.+++++...-+.++-. .+....-+.+++..+..+...+.....++.+
T Consensus 467 ~~~l~~~t~~~~~e~~~~ekel~~~~~~~n~~~~e~~vaesel~~L~~~~~~~~~~~e~lk~~L~~~~~~~~e~~~~l~~ 546 (1293)
T KOG0996|consen 467 LDSLKQETEGIREEIEKLEKELMPLLKQVNEARSELDVAESELDILLSRHETGLKKVEELKGKLLASSESLKEKKTELDD 546 (1293)
T ss_pred HHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555666666666666666666666666666666664444443322 2222233455555555555555555555555
Q ss_pred HHHHHHHHHHhhhhchHHHHHHHHhh
Q 007520 247 LKSEYKNLLEEKETMSDELQAARQRL 272 (600)
Q Consensus 247 l~~~~~~l~~~~~~~~~el~~~~~~l 272 (600)
++..+..++........++..+++..
T Consensus 547 ~k~~l~~~k~e~~~~~k~l~~~~~e~ 572 (1293)
T KOG0996|consen 547 LKEELPSLKQELKEKEKELPKLRKEE 572 (1293)
T ss_pred HHHhhhhHHHHHHHHHHhHHHHHHHH
Confidence 55555444445555555555544333
No 58
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=97.83 E-value=3.7e-05 Score=55.61 Aligned_cols=40 Identities=25% Similarity=0.390 Sum_probs=37.9
Q ss_pred CchhHHHHHHcChHHHHHHHHcCCCHHHHHHHHHHHHHhh
Q 007520 461 NEKLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFA 500 (600)
Q Consensus 461 ~~e~r~~i~~~G~i~~Lv~lL~s~~~~v~~~A~~aL~nLa 500 (600)
+++++..+++.|+++.|+.+|.++++.++..|+|+|+||+
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 4678899999999999999999999999999999999997
No 59
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.83 E-value=0.014 Score=68.87 Aligned_cols=152 Identities=20% Similarity=0.183 Sum_probs=73.6
Q ss_pred hhHHHHHHHHHhHHHHHHHhhhHHHHHHHHHhhhhhhhhhhhhHHHHHH-HHHHhhhhhhhhhhhhhHHhhhhhhhhhhh
Q 007520 100 SYDESMRNLVTRSEFLEKENAHLELEVEKILGELNHQKDQNNLKREKIV-QLEISLKNSKQYEMENSTYQKALADTTQLY 178 (600)
Q Consensus 100 ~~~~~~~~l~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~ 178 (600)
+|..++-+..+.|+-|....-..+.++++.+..+.+..........+.. .|.--+++.+ ......+.+
T Consensus 437 ~~~~~i~~~~~ei~~L~~~~~~~~~~l~e~~~~l~~~t~~~~~e~~~~ekel~~~~~~~n-----------~~~~e~~va 505 (1293)
T KOG0996|consen 437 KARIEIQKCQTEIEQLEELLEKEERELDEILDSLKQETEGIREEIEKLEKELMPLLKQVN-----------EARSELDVA 505 (1293)
T ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHH
Confidence 4445555555666655555555566666655555444433222222211 1111111111 222356667
Q ss_pred HHHHHHHHHHhHhHHHhhhhhHHHHHHHHHHHhhhhhcc-cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007520 179 EKKIAELNKKLEDEHACFEGAVEQLDMVKKLLSDYQNSN-QGQKEVHELCVKLKETRQLHESAVYEVQTLKSEYKNLLEE 257 (600)
Q Consensus 179 ~~~~~~l~~~l~~e~~~~~~~~~~~~~~~~~~~~~q~~~-~~~~e~~~l~~~~~d~~~~~e~~~~el~~l~~~~~~l~~~ 257 (600)
++++..|.+.=+.....++.+.+.|.. .+.+. ...+++..++..+.++.+++.....++-.++....++.+.
T Consensus 506 esel~~L~~~~~~~~~~~e~lk~~L~~-------~~~~~~e~~~~l~~~k~~l~~~k~e~~~~~k~l~~~~~e~~~~~~~ 578 (1293)
T KOG0996|consen 506 ESELDILLSRHETGLKKVEELKGKLLA-------SSESLKEKKTELDDLKEELPSLKQELKEKEKELPKLRKEERNLKSQ 578 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 777777777666555444444333333 32222 3344566666666666666666555554444444444444
Q ss_pred hhhchHHHHHHH
Q 007520 258 KETMSDELQAAR 269 (600)
Q Consensus 258 ~~~~~~el~~~~ 269 (600)
....-..+.-++
T Consensus 579 ~~~~rqrveE~k 590 (1293)
T KOG0996|consen 579 LNKLRQRVEEAK 590 (1293)
T ss_pred HHHHHHHHHHHH
Confidence 444433333333
No 60
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.81 E-value=0.00045 Score=81.06 Aligned_cols=223 Identities=16% Similarity=0.177 Sum_probs=139.9
Q ss_pred HhcccCCCCccccchHHHHhhcCchhHHHHHhc---CCHHHHHHhhCCCCHHHHHHHHHHHHHhhC-C-cchHHHHHHcC
Q 007520 314 GSSRFGAPMSLQKSNPSRELSGQRATIAKICDE---VGLPKILQLLTSEDPDVQIHAVKVVANLAA-E-DINQEKIVEEG 388 (600)
Q Consensus 314 Lv~~L~s~~~~~r~~a~~~L~~~~~~~~~i~e~---GgV~~Lv~LL~s~~~~vr~~Aa~aL~nLa~-~-~~~~~~iv~~G 388 (600)
+-.++.|.....|..++.+++.-.+...+.+.. ..++-++..|.++++.||-.|+.+++.++. . +....+..+.
T Consensus 353 l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~- 431 (1075)
T KOG2171|consen 353 LEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHER- 431 (1075)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHh-
Confidence 334556666666776666643321211222211 124444577889999999999999999998 3 4445555554
Q ss_pred CHHHHHHHHccCCCHHHHHHHHHHHHHhhcCCccHHHHHH---hCchhhhHhhhccCCCHHHHHHHHHHHHHHhCCc--h
Q 007520 389 GLDALLLLLRTSQNTTILRVASGAIANLAMNEMNQGLIMS---RGGGQLLAKTASKTDDPQTLRMVAGALANLCGNE--K 463 (600)
Q Consensus 389 ~I~~Lv~lL~~~~~~~v~~~Al~aL~NLa~~~~~r~~I~~---~G~I~~Lv~lL~~~~~~~v~~~Aa~aL~nLa~~~--e 463 (600)
.++.|+..+.+..++.++.+|+.||-|++.. +-..++. .+.+.+++.+|..++.+.+++.++.+|+..+... .
T Consensus 432 l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~--~~~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~ 509 (1075)
T KOG2171|consen 432 LPPALIALLDSTQNVRVQAHAAAALVNFSEE--CDKSILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQEK 509 (1075)
T ss_pred ccHHHHHHhcccCchHHHHHHHHHHHHHHHh--CcHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhh
Confidence 7788999998788889999999999999865 2222222 3455545556667788899999999999987432 2
Q ss_pred hHHHHHHcChHHHHHHHHcCCC-HH---HHHHHHHHHHHhhcCCchhhhhcchhhHHHHHh--CCcHHHHHHh---hcCC
Q 007520 464 LHTMLEEDGAIKALLAMVRSGN-ID---VIAQVARGLANFAKCESRAIVQGQRKGRSHLME--DSALEWLIAN---SKTN 534 (600)
Q Consensus 464 ~r~~i~~~G~i~~Lv~lL~s~~-~~---v~~~A~~aL~nLa~~~~~~~~q~~~~~r~~l~e--~g~l~~Lv~L---l~s~ 534 (600)
....+ .-.+|.|...|...+ .+ ++-.+..+++-++. ..||+.|.. .-++..+..+ ....
T Consensus 510 F~pY~--d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~----------AVGke~F~~~a~eliqll~~~~~~~~~~ 577 (1075)
T KOG2171|consen 510 FIPYF--DRLMPLLKNFLQNADDKDLRELRGKTMECLSLIAR----------AVGKEKFLPLAEELIQLLLELQGSDQDD 577 (1075)
T ss_pred hHhHH--HHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHH----------HhhhhhhhHhHHHHHHHHHhhcccchhh
Confidence 22211 246677888886443 33 34444455554442 346666654 2355555555 3334
Q ss_pred CHHHHHHHHHHHHHhhc
Q 007520 535 SASTRRHVELALCHLAQ 551 (600)
Q Consensus 535 ~~~v~~~Aa~aL~nLa~ 551 (600)
+...+.....+..+||.
T Consensus 578 dd~~~sy~~~~warmc~ 594 (1075)
T KOG2171|consen 578 DDPLRSYMIAFWARMCR 594 (1075)
T ss_pred ccccHHHHHHHHHHHHH
Confidence 56677777777777764
No 61
>PF05536 Neurochondrin: Neurochondrin
Probab=97.79 E-value=0.0022 Score=72.45 Aligned_cols=197 Identities=20% Similarity=0.156 Sum_probs=140.2
Q ss_pred CHHHHHHhhCCCCHHHHHHHHHHHHHhhCCcc----hHHHHHHcCCHHHHHHHHccC------CCHHHHHHHHHHHHHhh
Q 007520 348 GLPKILQLLTSEDPDVQIHAVKVVANLAAEDI----NQEKIVEEGGLDALLLLLRTS------QNTTILRVASGAIANLA 417 (600)
Q Consensus 348 gV~~Lv~LL~s~~~~vr~~Aa~aL~nLa~~~~----~~~~iv~~G~I~~Lv~lL~~~------~~~~v~~~Al~aL~NLa 417 (600)
.+...+.+|++.+.+-|-.+.-.+.++..+.+ .+..+.++=|.+.|-.+|++. +....+..|...|..+|
T Consensus 6 ~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~ 85 (543)
T PF05536_consen 6 SLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFC 85 (543)
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHc
Confidence 37788899999886666666667777776332 244577887888888999862 33456777999999999
Q ss_pred cCCccHHHHHHhCchhhhHhhhccCCCHHHHHHHHHHHHHHhCCchhHHHHHHcChHHHHHHHHcCCCHHHHHHHHHHHH
Q 007520 418 MNEMNQGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLCGNEKLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLA 497 (600)
Q Consensus 418 ~~~~~r~~I~~~G~I~~Lv~lL~~~~~~~v~~~Aa~aL~nLa~~~e~r~~i~~~G~i~~Lv~lL~s~~~~v~~~A~~aL~ 497 (600)
..|+....--=.+-||.|++++..+.+..+...+..+|..++..++++..+++.|+++.|+..+.+ ++.....|+.+|.
T Consensus 86 ~~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al~lL~ 164 (543)
T PF05536_consen 86 RDPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPN-QSFQMEIALNLLL 164 (543)
T ss_pred CChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHh-CcchHHHHHHHHH
Confidence 987664332223469999999977666588999999999999999999999999999999999976 5666888999999
Q ss_pred HhhcCCchhhhhcchhhHHHHHhCCcHHHHHHhhcCCCHHHHHHHHHHHHHhh
Q 007520 498 NFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSKTNSASTRRHVELALCHLA 550 (600)
Q Consensus 498 nLa~~~~~~~~q~~~~~r~~l~e~g~l~~Lv~Ll~s~~~~v~~~Aa~aL~nLa 550 (600)
+++......... +.-..+ ...++.|-..........+..++..|..+-
T Consensus 165 ~Lls~~~~~~~~---~~~~~l--~~il~~La~~fs~~~~~~kfell~~L~~~L 212 (543)
T PF05536_consen 165 NLLSRLGQKSWA---EDSQLL--HSILPSLARDFSSFHGEDKFELLEFLSAFL 212 (543)
T ss_pred HHHHhcchhhhh---hhHHHH--HHHHHHHHHHHHhhccchHHHHHHHHHHhc
Confidence 987543211000 000011 133444555555555566667777777773
No 62
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=97.77 E-value=5.4e-05 Score=54.76 Aligned_cols=40 Identities=18% Similarity=0.242 Sum_probs=37.3
Q ss_pred hhhHHHHHhCCcHHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 007520 512 RKGRSHLMEDSALEWLIANSKTNSASTRRHVELALCHLAQ 551 (600)
Q Consensus 512 ~~~r~~l~e~g~l~~Lv~Ll~s~~~~v~~~Aa~aL~nLa~ 551 (600)
++++..+++.|++|.|+.++.++++.++..|+|+|+||+.
T Consensus 2 ~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 2 PENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 4678889999999999999999999999999999999974
No 63
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.72 E-value=0.0016 Score=76.56 Aligned_cols=173 Identities=16% Similarity=0.110 Sum_probs=121.1
Q ss_pred HHhhCCCCHHHHHHHHHHHHHhhC-CcchHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcC--CccHHHHHHh
Q 007520 353 LQLLTSEDPDVQIHAVKVVANLAA-EDINQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMN--EMNQGLIMSR 429 (600)
Q Consensus 353 v~LL~s~~~~vr~~Aa~aL~nLa~-~~~~~~~iv~~G~I~~Lv~lL~~~~~~~v~~~Al~aL~NLa~~--~~~r~~I~~~ 429 (600)
-.++.|.+..-|..|..+|..++. +.+.-...... +++..+..|. ++++.|+..|+.|+..++.+ |...+.--+
T Consensus 354 ~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~-Il~~Vl~~l~-DphprVr~AA~naigQ~stdl~p~iqk~~~e- 430 (1075)
T KOG2171|consen 354 EAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLPK-ILPIVLNGLN-DPHPRVRYAALNAIGQMSTDLQPEIQKKHHE- 430 (1075)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHHH-HHHHHHhhcC-CCCHHHHHHHHHHHHhhhhhhcHHHHHHHHH-
Confidence 366789999999999999998886 33333222222 4666667777 88999999999999999988 554444444
Q ss_pred CchhhhHhhhccCCCHHHHHHHHHHHHHHhCC-c-hhHHHHHHcChHHHHHH-HHcCCCHHHHHHHHHHHHHhhcCCchh
Q 007520 430 GGGQLLAKTASKTDDPQTLRMVAGALANLCGN-E-KLHTMLEEDGAIKALLA-MVRSGNIDVIAQVARGLANFAKCESRA 506 (600)
Q Consensus 430 G~I~~Lv~lL~~~~~~~v~~~Aa~aL~nLa~~-~-e~r~~i~~~G~i~~Lv~-lL~s~~~~v~~~A~~aL~nLa~~~~~~ 506 (600)
-.++.|+..+.+..++.+...|+.++-|++.. + +.-..+. .+.+..++. ++.++.+.+++.|+.+|+..|..
T Consensus 431 ~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYL-d~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~A---- 505 (1075)
T KOG2171|consen 431 RLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYL-DGLMEKKLLLLLQSSKPYVQEQAVTAIASVADA---- 505 (1075)
T ss_pred hccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHH-HHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHH----
Confidence 36778889998888889999999999998743 2 2212111 244443333 44689999999999999999853
Q ss_pred hhhcchhhHHHHHh--CCcHHHHHHhhcCCC-HHHHH
Q 007520 507 IVQGQRKGRSHLME--DSALEWLIANSKTNS-ASTRR 540 (600)
Q Consensus 507 ~~q~~~~~r~~l~e--~g~l~~Lv~Ll~s~~-~~v~~ 540 (600)
....|.. ...+|.|...+.+.+ ...+.
T Consensus 506 -------A~~~F~pY~d~~Mp~L~~~L~n~~~~d~r~ 535 (1075)
T KOG2171|consen 506 -------AQEKFIPYFDRLMPLLKNFLQNADDKDLRE 535 (1075)
T ss_pred -------HhhhhHhHHHHHHHHHHHHHhCCCchhhHH
Confidence 2333444 457788888777654 44433
No 64
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=97.69 E-value=0.0036 Score=68.25 Aligned_cols=232 Identities=15% Similarity=0.059 Sum_probs=141.1
Q ss_pred ccCchHHHhcccCC-CCccccchHHHHhhcCchhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCcchHHHHH
Q 007520 307 TKDYISKGSSRFGA-PMSLQKSNPSRELSGQRATIAKICDEVGLPKILQLLTSEDPDVQIHAVKVVANLAAEDINQEKIV 385 (600)
Q Consensus 307 ~~g~i~~Lv~~L~s-~~~~~r~~a~~~L~~~~~~~~~i~e~GgV~~Lv~LL~s~~~~vr~~Aa~aL~nLa~~~~~~~~iv 385 (600)
+..+++.++..+.. ........++..+...+.. .++..|+..|.+.++.++..++.+|+-+-
T Consensus 52 G~~a~~~L~~aL~~d~~~ev~~~aa~al~~~~~~-------~~~~~L~~~L~d~~~~vr~aaa~ALg~i~---------- 114 (410)
T TIGR02270 52 GKAATELLVSALAEADEPGRVACAALALLAQEDA-------LDLRSVLAVLQAGPEGLCAGIQAALGWLG---------- 114 (410)
T ss_pred hHhHHHHHHHHHhhCCChhHHHHHHHHHhccCCh-------HHHHHHHHHhcCCCHHHHHHHHHHHhcCC----------
Confidence 34567777777743 3344433333333222111 13888999999989999999998887522
Q ss_pred HcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcCCccHHHHHHhCchhhhHhhhccCCCHHHHHHHHHHHHHHhCCchhH
Q 007520 386 EEGGLDALLLLLRTSQNTTILRVASGAIANLAMNEMNQGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLCGNEKLH 465 (600)
Q Consensus 386 ~~G~I~~Lv~lL~~~~~~~v~~~Al~aL~NLa~~~~~r~~I~~~G~I~~Lv~lL~~~~~~~v~~~Aa~aL~nLa~~~e~r 465 (600)
..+..+.|+.+|. +.++.++..++.++.... ....+.+..+|. +.++.++..|+.+|+.+.
T Consensus 115 ~~~a~~~L~~~L~-~~~p~vR~aal~al~~r~-----------~~~~~~L~~~L~-d~d~~Vra~A~raLG~l~------ 175 (410)
T TIGR02270 115 GRQAEPWLEPLLA-ASEPPGRAIGLAALGAHR-----------HDPGPALEAALT-HEDALVRAAALRALGELP------ 175 (410)
T ss_pred chHHHHHHHHHhc-CCChHHHHHHHHHHHhhc-----------cChHHHHHHHhc-CCCHHHHHHHHHHHHhhc------
Confidence 2235677888887 667888887776666521 224567888885 578899999999998554
Q ss_pred HHHHHcChHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchhhh--------hcchhhH--HHHH----hCCcHHHHHHhh
Q 007520 466 TMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFAKCESRAIV--------QGQRKGR--SHLM----EDSALEWLIANS 531 (600)
Q Consensus 466 ~~i~~~G~i~~Lv~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~--------q~~~~~r--~~l~----e~g~l~~Lv~Ll 531 (600)
....++.|...+.+.++.|+..|++++..+-. +.+.. .|.+..+ ..+. ....+++|..++
T Consensus 176 ----~~~a~~~L~~al~d~~~~VR~aA~~al~~lG~--~~A~~~l~~~~~~~g~~~~~~l~~~lal~~~~~a~~~L~~ll 249 (410)
T TIGR02270 176 ----RRLSESTLRLYLRDSDPEVRFAALEAGLLAGS--RLAWGVCRRFQVLEGGPHRQRLLVLLAVAGGPDAQAWLRELL 249 (410)
T ss_pred ----cccchHHHHHHHcCCCHHHHHHHHHHHHHcCC--HhHHHHHHHHHhccCccHHHHHHHHHHhCCchhHHHHHHHHh
Confidence 33566778888899999999999999977742 22110 0101100 0111 124566666666
Q ss_pred cCCCHHHHHHHHHHHHHhhcCchhHHHHHHcccHHHHHHhhhcCChHHHHHHHHHHHhcCc
Q 007520 532 KTNSASTRRHVELALCHLAQNEDNARDFISRGGAKELVQISIESSREDIRNLAKKTMKSNP 592 (600)
Q Consensus 532 ~s~~~~v~~~Aa~aL~nLa~~~~~~~~lv~~G~l~~Lv~ll~~~~~~~ir~~A~~~L~~~p 592 (600)
+++. ++..++.+|..+-. ..+++.|+..+....-..+-..|.+.+...+
T Consensus 250 ~d~~--vr~~a~~AlG~lg~----------p~av~~L~~~l~d~~~aR~A~eA~~~ItG~~ 298 (410)
T TIGR02270 250 QAAA--TRREALRAVGLVGD----------VEAAPWCLEAMREPPWARLAGEAFSLITGMD 298 (410)
T ss_pred cChh--hHHHHHHHHHHcCC----------cchHHHHHHHhcCcHHHHHHHHHHHHhhCCC
Confidence 6543 77777777766532 2366777777655432233333344444433
No 65
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=97.67 E-value=0.14 Score=57.17 Aligned_cols=81 Identities=16% Similarity=0.255 Sum_probs=59.9
Q ss_pred hhhhHHHHHHHHHHhHhHHHhhhhhHHHHHHHHHHHhhhhhc-ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007520 175 TQLYEKKIAELNKKLEDEHACFEGAVEQLDMVKKLLSDYQNS-NQGQKEVHELCVKLKETRQLHESAVYEVQTLKSEYKN 253 (600)
Q Consensus 175 ~~~~~~~~~~l~~~l~~e~~~~~~~~~~~~~~~~~~~~~q~~-~~~~~e~~~l~~~~~d~~~~~e~~~~el~~l~~~~~~ 253 (600)
.+....+...|+..|..-..+..+++.+...|.+-|++.... ..+..||++..-..++++........+++.-+++.+.
T Consensus 278 ~~~~~~e~e~LkeqLr~~qe~lqaSqq~~~~L~~EL~~~~~~RDrt~aeLh~aRLe~aql~~qLad~~l~lke~~~q~~q 357 (546)
T PF07888_consen 278 AQQLQQENEALKEQLRSAQEQLQASQQEAELLRKELSDAVNVRDRTMAELHQARLEAAQLKLQLADASLELKEGRSQWAQ 357 (546)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666788888887788888888888898888887766 5788888888877888887777777776666655543
Q ss_pred HH
Q 007520 254 LL 255 (600)
Q Consensus 254 l~ 255 (600)
.+
T Consensus 358 Ek 359 (546)
T PF07888_consen 358 EK 359 (546)
T ss_pred HH
Confidence 33
No 66
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=97.63 E-value=0.076 Score=65.37 Aligned_cols=43 Identities=28% Similarity=0.323 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHH
Q 007520 223 VHELCVKLKETRQLHESAVYEVQTLKSEYKNLLEEKETMSDEL 265 (600)
Q Consensus 223 ~~~l~~~~~d~~~~~e~~~~el~~l~~~~~~l~~~~~~~~~el 265 (600)
+..+...+..+......+..++..+...+..+.........++
T Consensus 435 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~ 477 (1179)
T TIGR02168 435 LKELQAELEELEEELEELQEELERLEEALEELREELEEAEQAL 477 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444443334333333333333333333
No 67
>PTZ00429 beta-adaptin; Provisional
Probab=97.61 E-value=0.0098 Score=69.43 Aligned_cols=223 Identities=12% Similarity=0.136 Sum_probs=134.4
Q ss_pred cCchHHHhcccCCCCccccchHHHH-hh---cCchhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhC-CcchHH
Q 007520 308 KDYISKGSSRFGAPMSLQKSNPSRE-LS---GQRATIAKICDEVGLPKILQLLTSEDPDVQIHAVKVVANLAA-EDINQE 382 (600)
Q Consensus 308 ~g~i~~Lv~~L~s~~~~~r~~a~~~-L~---~~~~~~~~i~e~GgV~~Lv~LL~s~~~~vr~~Aa~aL~nLa~-~~~~~~ 382 (600)
.|-+..|-..|.+.....+..+++- ++ ...+. ..+.+.++.++.+.+..++.-..-.|.+.+. +++...
T Consensus 31 kge~~ELr~~L~s~~~~~kk~alKkvIa~mt~G~Dv------S~LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~pelal 104 (746)
T PTZ00429 31 RGEGAELQNDLNGTDSYRKKAAVKRIIANMTMGRDV------SYLFVDVVKLAPSTDLELKKLVYLYVLSTARLQPEKAL 104 (746)
T ss_pred cchHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCc------hHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccChHHHH
Confidence 4555666666666555555555543 21 11111 1135666677788888888887777777766 333221
Q ss_pred HHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcCCccHHHHHHhCchhhhHhhhccCCCHHHHHHHHHHHHHHhC-C
Q 007520 383 KIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMNEMNQGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLCG-N 461 (600)
Q Consensus 383 ~iv~~G~I~~Lv~lL~~~~~~~v~~~Al~aL~NLa~~~~~r~~I~~~G~I~~Lv~lL~~~~~~~v~~~Aa~aL~nLa~-~ 461 (600)
. ++..+.+=+. ++++.++..|+++|+++-.. .+++. .++++...+. +.+|-|++.|+.++..+-. +
T Consensus 105 L-----aINtl~KDl~-d~Np~IRaLALRtLs~Ir~~-----~i~e~-l~~~lkk~L~-D~~pYVRKtAalai~Kly~~~ 171 (746)
T PTZ00429 105 L-----AVNTFLQDTT-NSSPVVRALAVRTMMCIRVS-----SVLEY-TLEPLRRAVA-DPDPYVRKTAAMGLGKLFHDD 171 (746)
T ss_pred H-----HHHHHHHHcC-CCCHHHHHHHHHHHHcCCcH-----HHHHH-HHHHHHHHhc-CCCHHHHHHHHHHHHHHHhhC
Confidence 1 2344455555 66787888787777776432 12222 3455666664 4778888888888888753 3
Q ss_pred chhHHHHHHcChHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchhhhhcc--------------hhhHHHHH----h---
Q 007520 462 EKLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFAKCESRAIVQGQ--------------RKGRSHLM----E--- 520 (600)
Q Consensus 462 ~e~r~~i~~~G~i~~Lv~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~q~~--------------~~~r~~l~----e--- 520 (600)
++ .+.+.|.++.|..+|.+.++.|..+|+.+|..+...++....-.+ +-++-.++ .
T Consensus 172 pe---lv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P 248 (746)
T PTZ00429 172 MQ---LFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKIESSNEWVNRLVYHLPECNEWGQLYILELLAAQRP 248 (746)
T ss_pred cc---cccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCC
Confidence 33 234567778888888888888888888888888655432110000 00011111 0
Q ss_pred ------CCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcC
Q 007520 521 ------DSALEWLIANSKTNSASTRRHVELALCHLAQN 552 (600)
Q Consensus 521 ------~g~l~~Lv~Ll~s~~~~v~~~Aa~aL~nLa~~ 552 (600)
...+..+...+++.++.|...|+.++++++..
T Consensus 249 ~~~~e~~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~ 286 (746)
T PTZ00429 249 SDKESAETLLTRVLPRMSHQNPAVVMGAIKVVANLASR 286 (746)
T ss_pred CCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCc
Confidence 13455666677788999999999999999764
No 68
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.54 E-value=0.014 Score=62.55 Aligned_cols=229 Identities=17% Similarity=0.187 Sum_probs=161.0
Q ss_pred hhcCchhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCc------ch----HHHHHHcCCHHHHHHHHccCCC
Q 007520 333 LSGQRATIAKICDEVGLPKILQLLTSEDPDVQIHAVKVVANLAAED------IN----QEKIVEEGGLDALLLLLRTSQN 402 (600)
Q Consensus 333 L~~~~~~~~~i~e~GgV~~Lv~LL~s~~~~vr~~Aa~aL~nLa~~~------~~----~~~iv~~G~I~~Lv~lL~~~~~ 402 (600)
++..++-...+++.+||+.|+.+|..+|.++....+..|.-|+..+ +. -..+++.++++.|+.-+..- |
T Consensus 111 lAt~PdLYp~lveln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvqnveRL-d 189 (536)
T KOG2734|consen 111 LATMPDLYPILVELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQNVERL-D 189 (536)
T ss_pred hhcChHHHHHHHHhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHHHHHHh-h
Confidence 7778888889999999999999999999999999999999888521 11 34566778888888776521 2
Q ss_pred HH------HHHHHHHHHHHhhcC-CccHHHHHHhCchhhhHhhh-ccCCCHHHHHHHHHHHHHHhCC-chhHHHHHHcCh
Q 007520 403 TT------ILRVASGAIANLAMN-EMNQGLIMSRGGGQLLAKTA-SKTDDPQTLRMVAGALANLCGN-EKLHTMLEEDGA 473 (600)
Q Consensus 403 ~~------v~~~Al~aL~NLa~~-~~~r~~I~~~G~I~~Lv~lL-~~~~~~~v~~~Aa~aL~nLa~~-~e~r~~i~~~G~ 473 (600)
+. -...++..+-|+... +..+..+++.|.+..|+.=+ ..+.-..-...|..+|+-+-.+ .+++..+....|
T Consensus 190 Esvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~~~~l~G 269 (536)
T KOG2734|consen 190 ESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKLLGPLDG 269 (536)
T ss_pred hcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhhhcCccc
Confidence 22 234567778888876 88889999998888877633 2222223334455566655444 457887888888
Q ss_pred HHHHHHHHc---CCC------HHHHHHHHHHHHHhhcCCchhhhhcchhhHHHHHhCCcHHHHHHhhcCCCHHHHHHHHH
Q 007520 474 IKALLAMVR---SGN------IDVIAQVARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSKTNSASTRRHVEL 544 (600)
Q Consensus 474 i~~Lv~lL~---s~~------~~v~~~A~~aL~nLa~~~~~~~~q~~~~~r~~l~e~g~l~~Lv~Ll~s~~~~v~~~Aa~ 544 (600)
+..++.-+. ..+ .....+...+|+.+... +.+|..+....|++...-+++. -.-.+..+..
T Consensus 270 iD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~---------~~nr~~Fl~~EGlqLm~Lmlr~-Kk~sr~Salk 339 (536)
T KOG2734|consen 270 IDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMA---------PANRERFLKGEGLQLMNLMLRE-KKVSRGSALK 339 (536)
T ss_pred HHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcC---------hhhhhhhhccccHHHHHHHHHH-HHHhhhhHHH
Confidence 888887762 222 23445555566655543 6788899998888876666665 3445667888
Q ss_pred HHHHhhcCc---hhHHHHHHcccHHHHHHhh
Q 007520 545 ALCHLAQNE---DNARDFISRGGAKELVQIS 572 (600)
Q Consensus 545 aL~nLa~~~---~~~~~lv~~G~l~~Lv~ll 572 (600)
+|-+...++ ++|..+++.+|+..+..+.
T Consensus 340 vLd~am~g~~gt~~C~kfVe~lGLrtiF~~F 370 (536)
T KOG2734|consen 340 VLDHAMFGPEGTPNCNKFVEILGLRTIFPLF 370 (536)
T ss_pred HHHHHHhCCCchHHHHHHHHHHhHHHHHHHH
Confidence 888886655 4889999988887776553
No 69
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.52 E-value=0.00072 Score=76.80 Aligned_cols=238 Identities=15% Similarity=0.056 Sum_probs=166.2
Q ss_pred cCchhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCcchHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHH
Q 007520 335 GQRATIAKICDEVGLPKILQLLTSEDPDVQIHAVKVVANLAAEDINQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIA 414 (600)
Q Consensus 335 ~~~~~~~~i~e~GgV~~Lv~LL~s~~~~vr~~Aa~aL~nLa~~~~~~~~iv~~G~I~~Lv~lL~~~~~~~v~~~Al~aL~ 414 (600)
.+...++..++.||...|+++.....+..+.++.++|..-..++..+ ....++++.+.+.++....=...++.+|+
T Consensus 492 ~~K~~~~~~Ik~~~~~aLlrl~~~q~e~akl~~~~aL~~~i~f~~~~----~~~v~~~~~s~~~~d~~~~en~E~L~alt 567 (748)
T KOG4151|consen 492 KEKYERAKKIKPGGYEALLRLGQQQFEEAKLKWYHALAGKIDFPGER----SYEVVKPLDSALHNDEKGLENFEALEALT 567 (748)
T ss_pred hhHHhcCccccccHHHHHHHHHHHhchHHHHHHHHHHhhhcCCCCCc----hhhhhhhhcchhhhhHHHHHHHHHHHHhh
Confidence 35566788899999999999998888889999999998322234333 22356777777663332222234899999
Q ss_pred HhhcC-CccHHHHHHhCchhhhHhhhccCCCHHHHHHHHHHHHHHhCCchhHHH-HHH-cChHHHHHHHHcCCCHHHHHH
Q 007520 415 NLAMN-EMNQGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLCGNEKLHTM-LEE-DGAIKALLAMVRSGNIDVIAQ 491 (600)
Q Consensus 415 NLa~~-~~~r~~I~~~G~I~~Lv~lL~~~~~~~v~~~Aa~aL~nLa~~~e~r~~-i~~-~G~i~~Lv~lL~s~~~~v~~~ 491 (600)
||+.. +..|..|+..-+++.+-.++.. +++..++.++..+.||...+..... +++ ..+++.....+...+.....+
T Consensus 568 nLas~s~s~r~~i~ke~~~~~ie~~~~e-e~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~~E~~~lA 646 (748)
T KOG4151|consen 568 NLASISESDRQKILKEKALGKIEELMTE-ENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVADEKFELA 646 (748)
T ss_pred cccCcchhhHHHHHHHhcchhhHHHhhc-ccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhhhhHHhhh
Confidence 99987 6677778887677777666644 7888999999999999988765544 444 456677776776677777788
Q ss_pred HHHHHHHhhcCCchhhhhcchhhHHHHHhCCcHHHHHHhhcCCCHHHHHHHHHHHHHhhc-CchhHHHHHHcccHHHHHH
Q 007520 492 VARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSKTNSASTRRHVELALCHLAQ-NEDNARDFISRGGAKELVQ 570 (600)
Q Consensus 492 A~~aL~nLa~~~~~~~~q~~~~~r~~l~e~g~l~~Lv~Ll~s~~~~v~~~Aa~aL~nLa~-~~~~~~~lv~~G~l~~Lv~ 570 (600)
+++++..++.-..+++. + ......+...++.++.+.++.+++.+....+|+.. ..+.+..+.....++.+..
T Consensus 647 ~a~a~a~I~sv~~n~c~------~-~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~~~~~ei~~~~~~~~~~~~l~~ 719 (748)
T KOG4151|consen 647 GAGALAAITSVVENHCS------R-ILELLEWLEILVRAIQDEDDEIQHRGLVIILNLFEALFEIAEKIFETEVMELLSG 719 (748)
T ss_pred ccccccchhhcchhhhh------h-HHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHHHHHHHHHHHhccchHHHHHHH
Confidence 88888866654432221 1 34446788999999999999999999999999754 4556677776666666655
Q ss_pred hhhcCChHHHHHHHH
Q 007520 571 ISIESSREDIRNLAK 585 (600)
Q Consensus 571 ll~~~~~~~ir~~A~ 585 (600)
.-.- +....++.+.
T Consensus 720 ~~~~-~~a~~~~~~~ 733 (748)
T KOG4151|consen 720 LQKL-NRAPKREDAA 733 (748)
T ss_pred HHHh-hhhhhhhhhh
Confidence 5432 3333444433
No 70
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=97.52 E-value=0.046 Score=63.44 Aligned_cols=18 Identities=33% Similarity=0.530 Sum_probs=14.9
Q ss_pred HHhHHHHHHHHHHhHHHH
Q 007520 17 SLCRKLETQVDHLTAEIE 34 (600)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~ 34 (600)
+-+.|||.++.+|.+|+.
T Consensus 418 ~a~~rLE~dvkkLraeLq 435 (697)
T PF09726_consen 418 DAISRLEADVKKLRAELQ 435 (697)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 456799999999998864
No 71
>PRK02224 chromosome segregation protein; Provisional
Probab=97.47 E-value=0.19 Score=60.43 Aligned_cols=16 Identities=13% Similarity=0.144 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHhh
Q 007520 48 EKLLRECQISYDEAKD 63 (600)
Q Consensus 48 ~~~~~~~~~~~~~~~~ 63 (600)
+..+.+++..+.+++.
T Consensus 205 ~~~l~~~~~~l~el~~ 220 (880)
T PRK02224 205 HERLNGLESELAELDE 220 (880)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334444444444443
No 72
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.45 E-value=0.29 Score=57.37 Aligned_cols=252 Identities=15% Similarity=0.138 Sum_probs=129.3
Q ss_pred hHHHHHHHHHhHHHHHHHhhhHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHhhhhhhh----hhhhhhHHhhhhhhhhh
Q 007520 101 YDESMRNLVTRSEFLEKENAHLELEVEKILGELNHQKDQNNLKREKIVQLEISLKNSKQ----YEMENSTYQKALADTTQ 176 (600)
Q Consensus 101 ~~~~~~~l~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~n~~~~~~l~~~~~ 176 (600)
.-++++.|..++.-+..++++.+..+.-...+|+..+...-.++..+..++..|+.-.- -+..+...+.+..+-..
T Consensus 292 m~~~~~~L~~~~~~~~~~~tr~~t~l~~~~~tl~~e~~k~e~i~~~i~e~~~~l~~k~~~~~~~~~~~~~~ke~~~~~s~ 371 (1174)
T KOG0933|consen 292 MGGEVKALEDKLDSLQNEITREETSLNLKKETLNGEEEKLEEIRKNIEEDRKKLKEKEKAMAKVEEGYEKLKEAFQEDSK 371 (1174)
T ss_pred hchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Confidence 33566788888888888888888888888888877777777777666666665554110 01122222222222222
Q ss_pred hhHHHHHHHHHHhH---hHHHhhhhhHHHHHHHHHHHhhhhhcccc--------hhhHHHHHHHHHHHHHHHHHHHHHHH
Q 007520 177 LYEKKIAELNKKLE---DEHACFEGAVEQLDMVKKLLSDYQNSNQG--------QKEVHELCVKLKETRQLHESAVYEVQ 245 (600)
Q Consensus 177 ~~~~~~~~l~~~l~---~e~~~~~~~~~~~~~~~~~~~~~q~~~~~--------~~e~~~l~~~~~d~~~~~e~~~~el~ 245 (600)
.|++.-..+..+.. ++..--..-++|+...|..+|+.+.-.++ ..|+...+...+.+.+.+..-..+++
T Consensus 372 ~~e~~e~~~eslt~G~Ss~~~~e~~l~~ql~~aK~~~~~~~t~~k~a~~k~e~~~~elk~~e~e~~t~~~~~~~~~~~ld 451 (1174)
T KOG0933|consen 372 LLEKAEELVESLTAGLSSNEDEEKTLEDQLRDAKITLSEASTEIKQAKLKLEHLRKELKLREGELATASAEYVKDIEELD 451 (1174)
T ss_pred HHHHHHHHHHHHhcccccCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHHHHHHHHHHH
Confidence 22222222221110 00001122345666666666655443322 22444455555555566666566666
Q ss_pred HHHHHHHHHHHhhhhch---HHHHHHHHhhhHHHHhhhhHHHHHHHHhccCCCCCCccccc-cccc----cCchHHHhcc
Q 007520 246 TLKSEYKNLLEEKETMS---DELQAARQRLLVEEKQRKAIEYELVKLKKTAPEHDDDFEDK-KPYT----KDYISKGSSR 317 (600)
Q Consensus 246 ~l~~~~~~l~~~~~~~~---~el~~~~~~l~~e~~~~~~le~~~~~l~~~l~~l~~~~~~~-~~~~----~g~i~~Lv~~ 317 (600)
.++..+.+++++.+.+. .-...++++.........+++.....+...++-+.+...+. +.|+ .|.+..|+..
T Consensus 452 ~~q~eve~l~~~l~~l~~~~~~~e~l~q~~~~l~~~~~~lk~~~~~l~a~~~~~~f~Y~dP~~nfdrs~V~G~Va~Li~v 531 (1174)
T KOG0933|consen 452 ALQNEVEKLKKRLQSLGYKIGQEEALKQRRAKLHEDIGRLKDELDRLLARLANYEFTYQDPEPNFDRSKVKGLVAKLIKV 531 (1174)
T ss_pred HHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCccchHHHHHHHHHHHhee
Confidence 66666666777666652 12233334444444455666666666666554444433322 1143 5566666655
Q ss_pred cCCCCccccchHHHHh---------hcCchhHHHHHhcCCHHHHHHhh
Q 007520 318 FGAPMSLQKSNPSREL---------SGQRATIAKICDEVGLPKILQLL 356 (600)
Q Consensus 318 L~s~~~~~r~~a~~~L---------~~~~~~~~~i~e~GgV~~Lv~LL 356 (600)
-+... ..|+... ..+...-..+.+.|.+..=+.++
T Consensus 532 kd~~~----~tAle~~aGgrLynvVv~te~tgkqLLq~g~l~rRvTiI 575 (1174)
T KOG0933|consen 532 KDRSY----ATALETTAGGRLYNVVVDTEDTGKQLLQRGNLRRRVTII 575 (1174)
T ss_pred CcchH----HHHHHHHhcCcceeEEeechHHHHHHhhcccccceeEEE
Confidence 44332 2233221 11344556677878766555444
No 73
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=97.43 E-value=0.2 Score=62.08 Aligned_cols=14 Identities=0% Similarity=-0.187 Sum_probs=7.8
Q ss_pred ccCchHHHhcccCC
Q 007520 307 TKDYISKGSSRFGA 320 (600)
Q Consensus 307 ~~g~i~~Lv~~L~s 320 (600)
..|.++++..+++-
T Consensus 514 ~~Gv~G~v~~li~v 527 (1163)
T COG1196 514 LPGVYGPVAELIKV 527 (1163)
T ss_pred CCCccchHHHhcCc
Confidence 45566666655543
No 74
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.43 E-value=0.00059 Score=57.16 Aligned_cols=86 Identities=24% Similarity=0.337 Sum_probs=71.5
Q ss_pred HHHHHHHH-cCCCHHHHHHHHHHHHHhhcCCchhhhhcchhhHHHHHhCCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcC
Q 007520 474 IKALLAMV-RSGNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSKTNSASTRRHVELALCHLAQN 552 (600)
Q Consensus 474 i~~Lv~lL-~s~~~~v~~~A~~aL~nLa~~~~~~~~q~~~~~r~~l~e~g~l~~Lv~Ll~s~~~~v~~~Aa~aL~nLa~~ 552 (600)
|+.|+..| .++++.++..++.+|+.+. ...+++.|+.++.++++.++..|+++|..+.
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~-------------------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~-- 59 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELG-------------------DPEAIPALIELLKDEDPMVRRAAARALGRIG-- 59 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCT-------------------HHHHHHHHHHHHTSSSHHHHHHHHHHHHCCH--
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcC-------------------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhC--
Confidence 57889988 7999999999999999553 1247999999999999999999999999872
Q ss_pred chhHHHHHHcccHHHHHHhhhcCChHHHHHHHHHHH
Q 007520 553 EDNARDFISRGGAKELVQISIESSREDIRNLAKKTM 588 (600)
Q Consensus 553 ~~~~~~lv~~G~l~~Lv~ll~~~~~~~ir~~A~~~L 588 (600)
...+++.|..++.+++...++..|...|
T Consensus 60 --------~~~~~~~L~~~l~~~~~~~vr~~a~~aL 87 (88)
T PF13646_consen 60 --------DPEAIPALIKLLQDDDDEVVREAAAEAL 87 (88)
T ss_dssp --------HHHTHHHHHHHHTC-SSHHHHHHHHHHH
T ss_pred --------CHHHHHHHHHHHcCCCcHHHHHHHHhhc
Confidence 3458899999998877777888888766
No 75
>PF05536 Neurochondrin: Neurochondrin
Probab=97.42 E-value=0.0044 Score=70.05 Aligned_cols=189 Identities=15% Similarity=0.144 Sum_probs=129.4
Q ss_pred hHHHhcccCCCCccccchHHH---H-hhcCc---hhHHHHHhcCCHHHHHHhhCC-------CCHHHHHHHHHHHHHhhC
Q 007520 311 ISKGSSRFGAPMSLQKSNPSR---E-LSGQR---ATIAKICDEVGLPKILQLLTS-------EDPDVQIHAVKVVANLAA 376 (600)
Q Consensus 311 i~~Lv~~L~s~~~~~r~~a~~---~-L~~~~---~~~~~i~e~GgV~~Lv~LL~s-------~~~~vr~~Aa~aL~nLa~ 376 (600)
+...+.+|++.....|..++- . +..++ ..++.+.++-|.+-|-++|.+ +....+.-|+.+|..++.
T Consensus 7 l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~~ 86 (543)
T PF05536_consen 7 LEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFCR 86 (543)
T ss_pred HHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHcC
Confidence 445555666655555554432 2 33322 234568899888888899976 346678889999999998
Q ss_pred CcchH--HHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcCCccHHHHHHhCchhhhHhhhccCCCHHHHHHHHHH
Q 007520 377 EDINQ--EKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMNEMNQGLIMSRGGGQLLAKTASKTDDPQTLRMVAGA 454 (600)
Q Consensus 377 ~~~~~--~~iv~~G~I~~Lv~lL~~~~~~~v~~~Al~aL~NLa~~~~~r~~I~~~G~I~~Lv~lL~~~~~~~v~~~Aa~a 454 (600)
.|+.. ..++.. ||.|+.++....+..+...|..+|..++.+++++..+++.|+++.|+..+.+ .+.....|+.+
T Consensus 87 ~~~~a~~~~~~~~--IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~--~~~~~E~Al~l 162 (543)
T PF05536_consen 87 DPELASSPQMVSR--IPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPN--QSFQMEIALNL 162 (543)
T ss_pred ChhhhcCHHHHHH--HHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHh--CcchHHHHHHH
Confidence 77653 555554 9999999986666578888999999999999999999999999999999965 55677888888
Q ss_pred HHHHhCCchhHHHHHHc----ChHHHHHHHHcCCCHHHHHHHHHHHHHhhcCC
Q 007520 455 LANLCGNEKLHTMLEED----GAIKALLAMVRSGNIDVIAQVARGLANFAKCE 503 (600)
Q Consensus 455 L~nLa~~~e~r~~i~~~----G~i~~Lv~lL~s~~~~v~~~A~~aL~nLa~~~ 503 (600)
+.+++........-... ..++.+-..+...+.......+..|.++-...
T Consensus 163 L~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~ 215 (543)
T PF05536_consen 163 LLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRS 215 (543)
T ss_pred HHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcC
Confidence 88887543311100111 22333333344444455666777777775443
No 76
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=97.41 E-value=0.0084 Score=63.42 Aligned_cols=157 Identities=24% Similarity=0.306 Sum_probs=103.5
Q ss_pred CCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCcchHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcCCccHHHH
Q 007520 347 VGLPKILQLLTSEDPDVQIHAVKVVANLAAEDINQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMNEMNQGLI 426 (600)
Q Consensus 347 GgV~~Lv~LL~s~~~~vr~~Aa~aL~nLa~~~~~~~~iv~~G~I~~Lv~lL~~~~~~~v~~~Al~aL~NLa~~~~~r~~I 426 (600)
..++.++.++.+++..+|..|+..++.+.. .-+++++..++. +.+..++..|..+|..+-.
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~~----------~~av~~l~~~l~-d~~~~vr~~a~~aLg~~~~-------- 103 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVALGELGS----------EEAVPLLRELLS-DEDPRVRDAAADALGELGD-------- 103 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhhch----------HHHHHHHHHHhc-CCCHHHHHHHHHHHHccCC--------
Confidence 457777788877778888877777554322 125777777777 5667777777776665532
Q ss_pred HHhCchhhhHhhhccCCCHHHHHHHHHHHHHHhCCchhHHHHHHcChHHHHHHHHcCCCH------------HHHHHHHH
Q 007520 427 MSRGGGQLLAKTASKTDDPQTLRMVAGALANLCGNEKLHTMLEEDGAIKALLAMVRSGNI------------DVIAQVAR 494 (600)
Q Consensus 427 ~~~G~I~~Lv~lL~~~~~~~v~~~Aa~aL~nLa~~~e~r~~i~~~G~i~~Lv~lL~s~~~------------~v~~~A~~ 494 (600)
..++++|+.++..+.+..++..++++|..+ .+..++..++..+..... .++..+..
T Consensus 104 --~~a~~~li~~l~~d~~~~vR~~aa~aL~~~----------~~~~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~ 171 (335)
T COG1413 104 --PEAVPPLVELLENDENEGVRAAAARALGKL----------GDERALDPLLEALQDEDSGSAAAALDAALLDVRAAAAE 171 (335)
T ss_pred --hhHHHHHHHHHHcCCcHhHHHHHHHHHHhc----------CchhhhHHHHHHhccchhhhhhhhccchHHHHHHHHHH
Confidence 225777777776446667777888887743 223346666666655442 34444555
Q ss_pred HHHHhhcCCchhhhhcchhhHHHHHhCCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCc
Q 007520 495 GLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSKTNSASTRRHVELALCHLAQNE 553 (600)
Q Consensus 495 aL~nLa~~~~~~~~q~~~~~r~~l~e~g~l~~Lv~Ll~s~~~~v~~~Aa~aL~nLa~~~ 553 (600)
+|..+- +...++.+..++.+.+..++..|+.+|..+....
T Consensus 172 ~l~~~~-------------------~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~ 211 (335)
T COG1413 172 ALGELG-------------------DPEAIPLLIELLEDEDADVRRAAASALGQLGSEN 211 (335)
T ss_pred HHHHcC-------------------ChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch
Confidence 555443 3347788888888888888888888888886654
No 77
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.40 E-value=0.00037 Score=58.38 Aligned_cols=87 Identities=25% Similarity=0.249 Sum_probs=69.8
Q ss_pred hhhhHhhhccCCCHHHHHHHHHHHHHHhCCchhHHHHHHcChHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchhhhhcc
Q 007520 432 GQLLAKTASKTDDPQTLRMVAGALANLCGNEKLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFAKCESRAIVQGQ 511 (600)
Q Consensus 432 I~~Lv~lL~~~~~~~v~~~Aa~aL~nLa~~~e~r~~i~~~G~i~~Lv~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~q~~ 511 (600)
|+.|+..|.+++++.++..++.+|+++. ...+++.|+.++.++++.|+..|+.+|+.+..
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~----------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~~---------- 60 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELG----------DPEAIPALIELLKDEDPMVRRAAARALGRIGD---------- 60 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCT----------HHHHHHHHHHHHTSSSHHHHHHHHHHHHCCHH----------
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcC----------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC----------
Confidence 5788998866788999999999998431 22578999999999999999999999998742
Q ss_pred hhhHHHHHhCCcHHHHHHhhcCC-CHHHHHHHHHHHH
Q 007520 512 RKGRSHLMEDSALEWLIANSKTN-SASTRRHVELALC 547 (600)
Q Consensus 512 ~~~r~~l~e~g~l~~Lv~Ll~s~-~~~v~~~Aa~aL~ 547 (600)
..+++.|..++.++ +..++..|+.+|.
T Consensus 61 ---------~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 61 ---------PEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp ---------HHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred ---------HHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 23889999988775 5667888888874
No 78
>PRK02224 chromosome segregation protein; Provisional
Probab=97.37 E-value=0.16 Score=60.95 Aligned_cols=26 Identities=27% Similarity=0.284 Sum_probs=11.0
Q ss_pred HHHhHHHHHHHhhhHHHHHHHHHhhh
Q 007520 108 LVTRSEFLEKENAHLELEVEKILGEL 133 (600)
Q Consensus 108 l~~~~~~~~~e~~~~~~~~~~~~~~~ 133 (600)
+..++..+......++.+++++...+
T Consensus 277 l~~~i~~~~~~~~~le~e~~~l~~~l 302 (880)
T PRK02224 277 LAEEVRDLRERLEELEEERDDLLAEA 302 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333344444444444444444444
No 79
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=97.35 E-value=0.043 Score=61.13 Aligned_cols=170 Identities=19% Similarity=0.190 Sum_probs=101.9
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHhhhH---HHHHHHHHhHHHHHHHhhhHHHHHHHHHhh
Q 007520 56 ISYDEAKDNLVTQVELLTAKIEMQQKLRENDKYEFEKQLRESQISYD---ESMRNLVTRSEFLEKENAHLELEVEKILGE 132 (600)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~e~~~~~~~~~~~~~~ 132 (600)
+.|...+.-+..+...+|.-|+.++...-...+.-.+++.+.+.+++ ++++.|..+|+-..++..--+..+++.+..
T Consensus 70 ~di~~lr~~~~~~ts~ik~~ye~El~~ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~ 149 (546)
T KOG0977|consen 70 HDINLLRGVVGRETSGIKAKYEAELATARKLLDETARERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSR 149 (546)
T ss_pred HHHHHHHhhccCCCcchhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhh
Confidence 33344444444444455555555544443333444444444444332 556667777776667777777777777777
Q ss_pred hhhhhhhhhhHHHHHHHHHHhhhhhhhhhhhhhHHhhhhhhhhhhhHHHHHHHHHHhHhHHHhhhhhHHHHHH-HHHHHh
Q 007520 133 LNHQKDQNNLKREKIVQLEISLKNSKQYEMENSTYQKALADTTQLYEKKIAELNKKLEDEHACFEGAVEQLDM-VKKLLS 211 (600)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~~~-~~~~~~ 211 (600)
+++-.+..+.....+..+|-+++.++ ........++..+++.+.+|..++-..+-.+.. ++.|-+
T Consensus 150 l~~leAe~~~~krr~~~le~e~~~Lk--------------~en~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Lleel~f 215 (546)
T KOG0977|consen 150 LSELEAEINTLKRRIKALEDELKRLK--------------AENSRLREELARARKQLDDETLLRVDLQNRVQTLLEELAF 215 (546)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHH--------------HHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 77777776666666666666665544 233455667777788888888777777777666 555656
Q ss_pred hhhhcccchhhH-----------------HHHHHHHHHHHHHHHH
Q 007520 212 DYQNSNQGQKEV-----------------HELCVKLKETRQLHES 239 (600)
Q Consensus 212 ~~q~~~~~~~e~-----------------~~l~~~~~d~~~~~e~ 239 (600)
..+.+++...|+ ..|..++.|++.+|+.
T Consensus 216 ~~~~h~~eI~e~~~~~~rd~t~~~r~~F~~eL~~Ai~eiRaqye~ 260 (546)
T KOG0977|consen 216 LKRIHKQEIEEERRKARRDTTADNREYFKNELALAIREIRAQYEA 260 (546)
T ss_pred HHhccHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHH
Confidence 666666555554 4555556666666654
No 80
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=97.33 E-value=0.013 Score=63.87 Aligned_cols=153 Identities=17% Similarity=0.117 Sum_probs=114.2
Q ss_pred cCCHHHHHHhh-CCCCHHHHHHHHHHHHHhhCCcchHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcCCccHH
Q 007520 346 EVGLPKILQLL-TSEDPDVQIHAVKVVANLAAEDINQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMNEMNQG 424 (600)
Q Consensus 346 ~GgV~~Lv~LL-~s~~~~vr~~Aa~aL~nLa~~~~~~~~iv~~G~I~~Lv~lL~~~~~~~v~~~Al~aL~NLa~~~~~r~ 424 (600)
..+++.++..| ..++.+++..++.++. ..++.. ++..|+..|. +.++.++..++.+|.-+
T Consensus 53 ~~a~~~L~~aL~~d~~~ev~~~aa~al~--~~~~~~--------~~~~L~~~L~-d~~~~vr~aaa~ALg~i-------- 113 (410)
T TIGR02270 53 KAATELLVSALAEADEPGRVACAALALL--AQEDAL--------DLRSVLAVLQ-AGPEGLCAGIQAALGWL-------- 113 (410)
T ss_pred HhHHHHHHHHHhhCCChhHHHHHHHHHh--ccCChH--------HHHHHHHHhc-CCCHHHHHHHHHHHhcC--------
Confidence 34588888888 4667777765554443 222211 3788999998 66777888888888743
Q ss_pred HHHHhCchhhhHhhhccCCCHHHHHHHHHHHHHHhCCchhHHHHHHcChHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCc
Q 007520 425 LIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLCGNEKLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFAKCES 504 (600)
Q Consensus 425 ~I~~~G~I~~Lv~lL~~~~~~~v~~~Aa~aL~nLa~~~e~r~~i~~~G~i~~Lv~lL~s~~~~v~~~A~~aL~nLa~~~~ 504 (600)
...++.+.|+.+|. +.++.++..++.++.. ......+.+..+|.+.++.|+..|+++|+.+...
T Consensus 114 --~~~~a~~~L~~~L~-~~~p~vR~aal~al~~-----------r~~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~~-- 177 (410)
T TIGR02270 114 --GGRQAEPWLEPLLA-ASEPPGRAIGLAALGA-----------HRHDPGPALEAALTHEDALVRAAALRALGELPRR-- 177 (410)
T ss_pred --CchHHHHHHHHHhc-CCChHHHHHHHHHHHh-----------hccChHHHHHHHhcCCCHHHHHHHHHHHHhhccc--
Confidence 23356788888884 5788888888877765 2223456889999999999999999999998632
Q ss_pred hhhhhcchhhHHHHHhCCcHHHHHHhhcCCCHHHHHHHHHHHHHhh
Q 007520 505 RAIVQGQRKGRSHLMEDSALEWLIANSKTNSASTRRHVELALCHLA 550 (600)
Q Consensus 505 ~~~~q~~~~~r~~l~e~g~l~~Lv~Ll~s~~~~v~~~Aa~aL~nLa 550 (600)
.+++.|...+.+.++.|+..|++++..+-
T Consensus 178 -----------------~a~~~L~~al~d~~~~VR~aA~~al~~lG 206 (410)
T TIGR02270 178 -----------------LSESTLRLYLRDSDPEVRFAALEAGLLAG 206 (410)
T ss_pred -----------------cchHHHHHHHcCCCHHHHHHHHHHHHHcC
Confidence 47777888899999999999999987773
No 81
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=97.31 E-value=0.0014 Score=71.37 Aligned_cols=187 Identities=14% Similarity=0.110 Sum_probs=139.9
Q ss_pred HHHHHHHhhCC-cchHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcC-CccHHHHHHhCchhhhHhhhccCCC
Q 007520 367 AVKVVANLAAE-DINQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMN-EMNQGLIMSRGGGQLLAKTASKTDD 444 (600)
Q Consensus 367 Aa~aL~nLa~~-~~~~~~iv~~G~I~~Lv~lL~~~~~~~v~~~Al~aL~NLa~~-~~~r~~I~~~G~I~~Lv~lL~~~~~ 444 (600)
++.+|..++.+ .--|..+.+..++.+|+.+|. .|+..+...+.++++|+... ...+.-+.+.|.|..|+.++. +.|
T Consensus 409 ~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls-~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~-sKD 486 (743)
T COG5369 409 IVLFLKSMSRSVTFLRTGLLDYPIVELLIDALS-NPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVM-SKD 486 (743)
T ss_pred HHHHHHHhhHHHHHHHhhccccchHHHHHHHhc-CccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhh-cch
Confidence 34445555553 334777888888999999998 56666777799999999876 778889999999999999996 467
Q ss_pred HHHHHHHHHHHHHHhCCc--hhHHHHHHcChHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchhhhhcchhhHHHHHhCC
Q 007520 445 PQTLRMVAGALANLCGNE--KLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLMEDS 522 (600)
Q Consensus 445 ~~v~~~Aa~aL~nLa~~~--e~r~~i~~~G~i~~Lv~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~q~~~~~r~~l~e~g 522 (600)
..++....|+++.+..+. +.+-.+...-++..++.+..+++-.|+.++.-.|+|++ |+... +++.+..++...
T Consensus 487 daLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNft-c~~~k----nEkskdv~~K~~ 561 (743)
T COG5369 487 DALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFT-CDTSK----NEKSKDVFIKAT 561 (743)
T ss_pred hhhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcc-ccccc----ccccceeEEecC
Confidence 789999999999998553 33445566677889999999999999999999999998 54221 012233333211
Q ss_pred ----cHHHHHHhhcCCCHHHHHHHHHHHHHhhcCchhHHHHH
Q 007520 523 ----ALEWLIANSKTNSASTRRHVELALCHLAQNEDNARDFI 560 (600)
Q Consensus 523 ----~l~~Lv~Ll~s~~~~v~~~Aa~aL~nLa~~~~~~~~lv 560 (600)
....|+..+...+|-.-...+..|.+++...++.+.++
T Consensus 562 p~~ylfk~l~~k~e~~np~~i~~~~yilv~~aa~d~~l~~~V 603 (743)
T COG5369 562 PRRYLFKRLIDKYEENNPMEILEGCYILVRNAACDDTLDYIV 603 (743)
T ss_pred hHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHhccchHHHHH
Confidence 34556666777787777788999999987777666665
No 82
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=97.27 E-value=0.31 Score=60.40 Aligned_cols=28 Identities=18% Similarity=0.342 Sum_probs=12.2
Q ss_pred HHHHHHHHHHhHhHHHhhhhhHHHHHHH
Q 007520 179 EKKIAELNKKLEDEHACFEGAVEQLDMV 206 (600)
Q Consensus 179 ~~~~~~l~~~l~~e~~~~~~~~~~~~~~ 206 (600)
...+..+...+++...+....+.++..+
T Consensus 806 ~~~~~~~~~~~~~~~~~~~~~~~ei~~l 833 (1163)
T COG1196 806 ERRLDALERELESLEQRRERLEQEIEEL 833 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444443
No 83
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=97.25 E-value=0.035 Score=64.84 Aligned_cols=258 Identities=12% Similarity=0.145 Sum_probs=165.3
Q ss_pred cCchHHHhcccCCCC-ccccchHHHH---hhcCchhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCcchHHH
Q 007520 308 KDYISKGSSRFGAPM-SLQKSNPSRE---LSGQRATIAKICDEVGLPKILQLLTSEDPDVQIHAVKVVANLAAEDINQEK 383 (600)
Q Consensus 308 ~g~i~~Lv~~L~s~~-~~~r~~a~~~---L~~~~~~~~~i~e~GgV~~Lv~LL~s~~~~vr~~Aa~aL~nLa~~~~~~~~ 383 (600)
-|-++-+...++... +.....++.. +..+.++...++..|.+..|+.+|.| -+..|..+..+|+.|++++.....
T Consensus 1770 ig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan~~Cv~~~a~~~vL~~LL~lLHS-~PS~R~~vL~vLYAL~S~~~i~ke 1848 (2235)
T KOG1789|consen 1770 IGNFPLLITYLRCRKHPKLQILALQVILLATANKECVTDLATCNVLTTLLTLLHS-QPSMRARVLDVLYALSSNGQIGKE 1848 (2235)
T ss_pred hcccHHHHHHHHHcCCchHHHHHHHHHHHHhcccHHHHHHHhhhHHHHHHHHHhc-ChHHHHHHHHHHHHHhcCcHHHHH
Confidence 456677777776543 3333445554 56688999999999999999999976 477899999999999999999888
Q ss_pred HHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcC----CccHHHHHH----------hCchhhhHhhhcc-CCCHH--
Q 007520 384 IVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMN----EMNQGLIMS----------RGGGQLLAKTASK-TDDPQ-- 446 (600)
Q Consensus 384 iv~~G~I~~Lv~lL~~~~~~~v~~~Al~aL~NLa~~----~~~r~~I~~----------~G~I~~Lv~lL~~-~~~~~-- 446 (600)
..+.||+..+..++..+.++..+..++..|+.|..+ |..+-.++. -++-...+.++.. +++|+
T Consensus 1849 A~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL~kFLP~~f~d~~RD~PEAaVH~fE~T~EnPELi 1928 (2235)
T KOG1789|consen 1849 ALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITLIKFLPEIFADSLRDSPEAAVHMFESTSENPELI 1928 (2235)
T ss_pred HHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeeehHHhchHHHHHHHhcCHHHHHHHHhccCCCcccc
Confidence 999999999999998788888899999999999865 322222222 0112344555532 12222
Q ss_pred ----HHHHHHHHHHHHhC--------Cc-------------------------hhHHHHHH------------cChHHHH
Q 007520 447 ----TLRMVAGALANLCG--------NE-------------------------KLHTMLEE------------DGAIKAL 477 (600)
Q Consensus 447 ----v~~~Aa~aL~nLa~--------~~-------------------------e~r~~i~~------------~G~i~~L 477 (600)
.+...-+.+..+++ ++ -+|..+.+ .|.+..+
T Consensus 1929 Wn~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~Ea~~E~aVGG~~~R~Fi~~P~f~LR~Pk~FL~~LLek~ 2008 (2235)
T KOG1789|consen 1929 WNEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSEADKECAVGGSINREFVVGPGFNLRHPKLFLTELLEKV 2008 (2235)
T ss_pred cCHhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcchhhhccCcccchhhhHHHhhCCCCcccCHHHHHHHHHHHH
Confidence 23333334444441 00 01222222 1233345
Q ss_pred HHHHcCCCHH--HHHHHHHHHHHhhcCCchhhhhcchhhHHHHHhCCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCchh
Q 007520 478 LAMVRSGNID--VIAQVARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSKTNSASTRRHVELALCHLAQNEDN 555 (600)
Q Consensus 478 v~lL~s~~~~--v~~~A~~aL~nLa~~~~~~~~q~~~~~r~~l~e~g~l~~Lv~Ll~s~~~~v~~~Aa~aL~nLa~~~~~ 555 (600)
+.+|...++. ...--..++..|.... +.....+...|.+|.++..+...+..+-..|..+|-.|+.+.-+
T Consensus 2009 lelm~~~~peqh~l~lLt~A~V~L~r~h--------P~LADqip~LGylPK~~~Am~~~n~s~P~SaiRVlH~Lsen~~C 2080 (2235)
T KOG1789|consen 2009 LELMSRPTPEQHELDLLTKAFVELVRHH--------PNLADQLPSLGYLPKFCTAMCLQNTSAPRSAIRVLHELSENQFC 2080 (2235)
T ss_pred HHHhcCCCcccchhHHHHHHHHHHHHhC--------cchhhhCCCccchHHHHHHHHhcCCcCcHHHHHHHHHHhhccHH
Confidence 5555433321 2222233333443332 34444566789999999977666556668888889999999989
Q ss_pred HHHHHHcccHHHHHHhhhc
Q 007520 556 ARDFISRGGAKELVQISIE 574 (600)
Q Consensus 556 ~~~lv~~G~l~~Lv~ll~~ 574 (600)
+..|....++..++..+..
T Consensus 2081 ~~AMA~l~~i~~~m~~mkK 2099 (2235)
T KOG1789|consen 2081 CDAMAQLPCIDGIMKSMKK 2099 (2235)
T ss_pred HHHHhccccchhhHHHHHh
Confidence 9999877666667776654
No 84
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.24 E-value=0.0079 Score=67.17 Aligned_cols=234 Identities=14% Similarity=0.050 Sum_probs=145.6
Q ss_pred cccCchHHHhcccCCCCccccchHHHHhhcCch-hHHH-HHhc-CCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCcchHH
Q 007520 306 YTKDYISKGSSRFGAPMSLQKSNPSRELSGQRA-TIAK-ICDE-VGLPKILQLLTSEDPDVQIHAVKVVANLAAEDINQE 382 (600)
Q Consensus 306 ~~~g~i~~Lv~~L~s~~~~~r~~a~~~L~~~~~-~~~~-i~e~-GgV~~Lv~LL~s~~~~vr~~Aa~aL~nLa~~~~~~~ 382 (600)
.-.-.+|.++.+.+++++..|..|+..++..-. ..+. ++.- .-+..++.+-..++++||...|.++.-|......+-
T Consensus 171 pl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl 250 (885)
T KOG2023|consen 171 PLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKL 250 (885)
T ss_pred chHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhc
Confidence 445578999999999988888888776332111 1111 1111 125666677788999999999999998886433332
Q ss_pred HHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcCCccHHHHHH--hCchhhhHhhhccCCCHHHHHH-H--------
Q 007520 383 KIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMNEMNQGLIMS--RGGGQLLAKTASKTDDPQTLRM-V-------- 451 (600)
Q Consensus 383 ~iv~~G~I~~Lv~lL~~~~~~~v~~~Al~aL~NLa~~~~~r~~I~~--~G~I~~Lv~lL~~~~~~~v~~~-A-------- 451 (600)
..--.+++..++..-+ +.|+.+.-.||.....+|..+..+..+.. ...||.|+.-+..+++..+... .
T Consensus 251 ~phl~~IveyML~~tq-d~dE~VALEACEFwla~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpD 329 (885)
T KOG2023|consen 251 VPHLDNIVEYMLQRTQ-DVDENVALEACEFWLALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPD 329 (885)
T ss_pred ccchHHHHHHHHHHcc-CcchhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCc
Confidence 2222345666666655 67888888999999999999866666655 4567777654433221111100 0
Q ss_pred -----------------------------------HHHHHHHhCCc----hhHHHHHHcChHHHHHHHH----cCCCHHH
Q 007520 452 -----------------------------------AGALANLCGNE----KLHTMLEEDGAIKALLAMV----RSGNIDV 488 (600)
Q Consensus 452 -----------------------------------a~aL~nLa~~~----e~r~~i~~~G~i~~Lv~lL----~s~~~~v 488 (600)
+..-|||-... +.-.-+.....++.++.+| .+++=.+
T Consensus 330 reeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanvf~~elL~~l~PlLk~~L~~~~W~v 409 (885)
T KOG2023|consen 330 REEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANVFGDELLPILLPLLKEHLSSEEWKV 409 (885)
T ss_pred hhhhccchhhhchhccCccccccccccccccccccccccccHhhccHHHHHHHHHhhHHHHHHHHHHHHHHHcCcchhhh
Confidence 00012221000 0111122334556666665 3566678
Q ss_pred HHHHHHHHHHhhcCCchhhhhcchhhHHHHHhC--CcHHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 007520 489 IAQVARGLANFAKCESRAIVQGQRKGRSHLMED--SALEWLIANSKTNSASTRRHVELALCHLAQ 551 (600)
Q Consensus 489 ~~~A~~aL~nLa~~~~~~~~q~~~~~r~~l~e~--g~l~~Lv~Ll~s~~~~v~~~Aa~aL~nLa~ 551 (600)
++.+.-+|+.+|.++ -.-|+.+ -.+|.|+.++.+..+.||.-.||+|...+.
T Consensus 410 rEagvLAlGAIAEGc-----------M~g~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~ 463 (885)
T KOG2023|consen 410 REAGVLALGAIAEGC-----------MQGFVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSK 463 (885)
T ss_pred hhhhHHHHHHHHHHH-----------hhhcccchHHHHHHHHHHhccCccceeeeeeeeHhhhhh
Confidence 999999999998542 2224332 367888889999999999999999988764
No 85
>PTZ00429 beta-adaptin; Provisional
Probab=97.23 E-value=0.034 Score=65.01 Aligned_cols=177 Identities=12% Similarity=0.075 Sum_probs=126.9
Q ss_pred cCCHHHHHHhhCCCCHHHHHHHHH-HHHHhhCCcchHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcC-CccH
Q 007520 346 EVGLPKILQLLTSEDPDVQIHAVK-VVANLAAEDINQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMN-EMNQ 423 (600)
Q Consensus 346 ~GgV~~Lv~LL~s~~~~vr~~Aa~-aL~nLa~~~~~~~~iv~~G~I~~Lv~lL~~~~~~~v~~~Al~aL~NLa~~-~~~r 423 (600)
.|-+..|-..|.+.+..-+..|++ ++++++...+.-. +.+.++.++. +++..+++.+...|.+++.. ++..
T Consensus 31 kge~~ELr~~L~s~~~~~kk~alKkvIa~mt~G~DvS~------LF~dVvk~~~-S~d~elKKLvYLYL~~ya~~~pela 103 (746)
T PTZ00429 31 RGEGAELQNDLNGTDSYRKKAAVKRIIANMTMGRDVSY------LFVDVVKLAP-STDLELKKLVYLYVLSTARLQPEKA 103 (746)
T ss_pred cchHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCchH------HHHHHHHHhC-CCCHHHHHHHHHHHHHHcccChHHH
Confidence 445666777777777766666665 5566666543322 4555667776 67899999999999999874 4432
Q ss_pred HHHHHhCchhhhHhhhccCCCHHHHHHHHHHHHHHhCCchhHHHHHHcChHHHHHHHHcCCCHHHHHHHHHHHHHhhcCC
Q 007520 424 GLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLCGNEKLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFAKCE 503 (600)
Q Consensus 424 ~~I~~~G~I~~Lv~lL~~~~~~~v~~~Aa~aL~nLa~~~e~r~~i~~~G~i~~Lv~lL~s~~~~v~~~A~~aL~nLa~~~ 503 (600)
-. ++..+.+=+. +++|.++-.|+++|+++.... ... -.++.+...+.+.+|-||..|+.++..+-..+
T Consensus 104 lL-----aINtl~KDl~-d~Np~IRaLALRtLs~Ir~~~-i~e-----~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~ 171 (746)
T PTZ00429 104 LL-----AVNTFLQDTT-NSSPVVRALAVRTMMCIRVSS-VLE-----YTLEPLRRAVADPDPYVRKTAAMGLGKLFHDD 171 (746)
T ss_pred HH-----HHHHHHHHcC-CCCHHHHHHHHHHHHcCCcHH-HHH-----HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhC
Confidence 22 3445555553 478888888888888765432 111 24566777788999999999999999997554
Q ss_pred chhhhhcchhhHHHHHhCCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcC
Q 007520 504 SRAIVQGQRKGRSHLMEDSALEWLIANSKTNSASTRRHVELALCHLAQN 552 (600)
Q Consensus 504 ~~~~~q~~~~~r~~l~e~g~l~~Lv~Ll~s~~~~v~~~Aa~aL~nLa~~ 552 (600)
|+ .+.+.|.++.|..++.+.++.|..+|..+|..+...
T Consensus 172 pe-----------lv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~ 209 (746)
T PTZ00429 172 MQ-----------LFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDY 209 (746)
T ss_pred cc-----------cccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHh
Confidence 33 244578999999999999999999999999999754
No 86
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=97.22 E-value=0.13 Score=57.80 Aligned_cols=99 Identities=26% Similarity=0.256 Sum_probs=72.4
Q ss_pred HHhhhHHHHHHHHHhHHHHHHHhhhHHHHHHHHHhhhhhh--hhhhhhHHHHHHHHHHhhhhhhhhhhhhhHHhhhhhh-
Q 007520 97 SQISYDESMRNLVTRSEFLEKENAHLELEVEKILGELNHQ--KDQNNLKREKIVQLEISLKNSKQYEMENSTYQKALAD- 173 (600)
Q Consensus 97 ~~~~~~~~~~~l~~~~~~~~~e~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~- 173 (600)
..-+|...+..|+.|+-.+-||.--|+.||+.|++++... ++.-.+..+.+.+|-.+=...-.+++-||+..|+|--
T Consensus 403 l~~e~~QRva~lEkKvqa~~kERDalr~e~kslk~ela~~l~~DeLaEkdE~I~~lm~EGEkLSK~ql~qs~iIkKLRAk 482 (961)
T KOG4673|consen 403 LREEYHQRVATLEKKVQALTKERDALRREQKSLKKELAAALLKDELAEKDEIINQLMAEGEKLSKKQLAQSAIIKKLRAK 482 (961)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 3558999999999999999999999999999999988433 2333445666666666555555666778888877754
Q ss_pred --hhhhhHHHHHHHHHHhHhHHHh
Q 007520 174 --TTQLYEKKIAELNKKLEDEHAC 195 (600)
Q Consensus 174 --~~~~~~~~~~~l~~~l~~e~~~ 195 (600)
+...+.++.-++.+.|++|-.+
T Consensus 483 ~ke~etl~~K~ge~i~~L~sE~~~ 506 (961)
T KOG4673|consen 483 IKEAETLEEKKGELITKLQSEENK 506 (961)
T ss_pred hhhhhHHHHHhhhHHHHHHHHHHH
Confidence 4555566777777777776443
No 87
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.22 E-value=0.39 Score=60.33 Aligned_cols=40 Identities=15% Similarity=0.228 Sum_probs=18.0
Q ss_pred hhHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHhhhHHHHHHHH
Q 007520 86 DKYEFEKQLRESQISYDESMRNLVTRSEFLEKENAHLELEVEKI 129 (600)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~e~~~~~~~~~~~ 129 (600)
++..++.++...+..+. .+..+++.+..+...+..++.+|
T Consensus 823 s~~ele~ei~~~~~el~----~l~~~~e~l~~e~e~~~~eI~~L 862 (1311)
T TIGR00606 823 TVQQVNQEKQEKQHELD----TVVSKIELNRKLIQDQQEQIQHL 862 (1311)
T ss_pred CHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666555444333 33333333344444444444444
No 88
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=97.21 E-value=0.24 Score=56.54 Aligned_cols=120 Identities=20% Similarity=0.247 Sum_probs=79.9
Q ss_pred HHHHHHHHhhhchhHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHhhhHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHh
Q 007520 74 AKIEMQQKLRENDKYEFEKQLRESQISYDESMRNLVTRSEFLEKENAHLELEVEKILGELNHQKDQNNLKREKIVQLEIS 153 (600)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (600)
.+|+.....+.+-+.+|..+-.+++....+.+..|..+...-.-|-.+...+++.+...+..=....-.+.+...+|..+
T Consensus 397 ~kL~~~v~~s~~rl~~L~~qWe~~R~pL~~e~r~lk~~~~~~~~e~~~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e 476 (594)
T PF05667_consen 397 AKLQALVEASEQRLVELAQQWEKHRAPLIEEYRRLKEKASNRESESKQKLQEIKELREEIKEIEEEIRQKEELYKQLVKE 476 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555556777777777777777777777766655555555555556555555544444444444555566666
Q ss_pred hhhhhhhhhhhhHHhhhhhhhhhhhHHHHHHHHHHhHhHHH
Q 007520 154 LKNSKQYEMENSTYQKALADTTQLYEKKIAELNKKLEDEHA 194 (600)
Q Consensus 154 ~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~l~~~l~~e~~ 194 (600)
++...+- .-=+.|.+-+-+-|....+|=.|+.|+|.|=..
T Consensus 477 ~e~~~k~-~~Rs~Yt~RIlEIv~NI~KQk~eI~KIl~DTr~ 516 (594)
T PF05667_consen 477 LEKLPKD-VNRSAYTRRILEIVKNIRKQKEEIEKILSDTRE 516 (594)
T ss_pred HHhCCCC-CCHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 6655544 445789999999999999999999999987644
No 89
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=97.20 E-value=0.034 Score=59.95 Aligned_cols=238 Identities=16% Similarity=0.127 Sum_probs=153.0
Q ss_pred CchhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCcchHHHHHHcCCHHHHHHHHccC-CCHHHHHHHHHHHH
Q 007520 336 QRATIAKICDEVGLPKILQLLTSEDPDVQIHAVKVVANLAAEDINQEKIVEEGGLDALLLLLRTS-QNTTILRVASGAIA 414 (600)
Q Consensus 336 ~~~~~~~i~e~GgV~~Lv~LL~s~~~~vr~~Aa~aL~nLa~~~~~~~~iv~~G~I~~Lv~lL~~~-~~~~v~~~Al~aL~ 414 (600)
++..+..+.-..-.+.+..++-+++..+|..|..+++-+..++..-..+.+.+.--.++..|..+ .+..=+..|+..++
T Consensus 14 ~p~l~~~~~~~~~~~~i~~~lL~~~~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR 93 (371)
T PF14664_consen 14 HPTLKYDLVLSFFGERIQCMLLSDSKEVRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIR 93 (371)
T ss_pred CchhhhhhhHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHH
Confidence 33333333333334555545555569999999999999999988888888887655555666533 23323667888888
Q ss_pred HhhcCCccHHHHHHhCchhhhHhhhccCCCHHHHHHHHHHHHHHh-CCchhHHHHHHcChHHHHHHHHcCCCHHHHHHHH
Q 007520 415 NLAMNEMNQGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLC-GNEKLHTMLEEDGAIKALLAMVRSGNIDVIAQVA 493 (600)
Q Consensus 415 NLa~~~~~r~~I~~~G~I~~Lv~lL~~~~~~~v~~~Aa~aL~nLa-~~~e~r~~i~~~G~i~~Lv~lL~s~~~~v~~~A~ 493 (600)
.+...+.+... +..|.+..++.+... .+...+..|..+|+.|+ .+|+ .+...||+..|+..+-++...+...++
T Consensus 94 ~~l~~~~~~~~-~~~~vvralvaiae~-~~D~lr~~cletL~El~l~~P~---lv~~~gG~~~L~~~l~d~~~~~~~~l~ 168 (371)
T PF14664_consen 94 AFLEIKKGPKE-IPRGVVRALVAIAEH-EDDRLRRICLETLCELALLNPE---LVAECGGIRVLLRALIDGSFSISESLL 168 (371)
T ss_pred HHHHhcCCccc-CCHHHHHHHHHHHhC-CchHHHHHHHHHHHHHHhhCHH---HHHHcCCHHHHHHHHHhccHhHHHHHH
Confidence 88766443322 356678888888855 55578888899999997 4565 356789999999999777667888888
Q ss_pred HHHHHhhcCCchhhhhcchhhHHHHHhCCcHHHHHHhhcCC-------CH--HHHHHHHHHHHHhhcCchhHHHHHH--c
Q 007520 494 RGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSKTN-------SA--STRRHVELALCHLAQNEDNARDFIS--R 562 (600)
Q Consensus 494 ~aL~nLa~~~~~~~~q~~~~~r~~l~e~g~l~~Lv~Ll~s~-------~~--~v~~~Aa~aL~nLa~~~~~~~~lv~--~ 562 (600)
.++..+-.+ +..|..+...--+..++.-..+. +. ..-..+..++..+-.+....-.+.. .
T Consensus 169 ~~lL~lLd~---------p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~ 239 (371)
T PF14664_consen 169 DTLLYLLDS---------PRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDF 239 (371)
T ss_pred HHHHHHhCC---------cchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCc
Confidence 888888743 44566555544555555532221 22 2333444555444333332222332 2
Q ss_pred ccHHHHHHhhhcCChHHHHHHHHHHH
Q 007520 563 GGAKELVQISIESSREDIRNLAKKTM 588 (600)
Q Consensus 563 G~l~~Lv~ll~~~~~~~ir~~A~~~L 588 (600)
.++..|+..++.++ +.+|.....++
T Consensus 240 ~~lksLv~~L~~p~-~~ir~~Ildll 264 (371)
T PF14664_consen 240 RGLKSLVDSLRLPN-PEIRKAILDLL 264 (371)
T ss_pred hHHHHHHHHHcCCC-HHHHHHHHHHH
Confidence 57888999998776 34666665444
No 90
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=97.19 E-value=0.52 Score=56.05 Aligned_cols=137 Identities=20% Similarity=0.261 Sum_probs=69.0
Q ss_pred hhHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHhhhhhhhhhhhhhHHhhhhhhhhhhhHHHHHHHHHHhHhHHHhhhhh
Q 007520 120 AHLELEVEKILGELNHQKDQNNLKREKIVQLEISLKNSKQYEMENSTYQKALADTTQLYEKKIAELNKKLEDEHACFEGA 199 (600)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~l~~~l~~e~~~~~~~ 199 (600)
+..+..+..++.+-+-|+.....++.....+-......+-.+-+=.++-+++.+.+-.++++|+++.+..-++ .
T Consensus 319 teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~~~~------~ 392 (1074)
T KOG0250|consen 319 TEIEAKIGELKDEVDAQDEEIEEARKDLDDLRREVNDLKEEIREIENSIRKLKKEVDRLEKQIADLEKQTNNE------L 392 (1074)
T ss_pred hHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh------h
Confidence 3333333333334344444333333333333333333333333334455566666666777777766666211 1
Q ss_pred HHHHHHHHHHHhhhhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHhhhHH
Q 007520 200 VEQLDMVKKLLSDYQNSNQGQKEVHELCVKLKETRQLHESAVYEVQTLKSEYKNLLEEKETMSDELQAARQRLLVE 275 (600)
Q Consensus 200 ~~~~~~~~~~~~~~q~~~~~~~e~~~l~~~~~d~~~~~e~~~~el~~l~~~~~~l~~~~~~~~~el~~~~~~l~~e 275 (600)
.+++.. -..++..|+.+++.+..+..++.++..+++..+........+...++..+++....-
T Consensus 393 ~~~~~e-------------~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i~~~i~~l~k~i~~~ 455 (1074)
T KOG0250|consen 393 GSELEE-------------RENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEKEHIEGEILQLRKKIENI 455 (1074)
T ss_pred hhhHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 111111 122456677777777777777777777777665544444444555566655555443
No 91
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=97.14 E-value=0.45 Score=49.93 Aligned_cols=193 Identities=18% Similarity=0.213 Sum_probs=97.1
Q ss_pred HHHHHHHHHHHHHhhhchhHHHHHHHHHHHh---hhHHHHHHHHHhHHHHHHHhhhHHHHHHHHHhhhhhhhhhhhhHHH
Q 007520 69 VELLTAKIEMQQKLRENDKYEFEKQLRESQI---SYDESMRNLVTRSEFLEKENAHLELEVEKILGELNHQKDQNNLKRE 145 (600)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (600)
++.++.-|+.++..-..-.+.+.+|..+... .+...+..+..+|+.....+..++.++..|+++++...........
T Consensus 45 ~~~~~~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~ 124 (312)
T PF00038_consen 45 VSRIKEMYEEELRELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLEN 124 (312)
T ss_dssp -HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcccccchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHH
Confidence 3333333444333333333333333333332 4556777888889888999999999999999999888877777777
Q ss_pred HHHHHHHhhhhhhhhhhhh-hHHhhhhh-hhhhhh-HHHHHHHHHHhHhHHHhhh----hhHHHHHH-HHHHHhhhhhcc
Q 007520 146 KIVQLEISLKNSKQYEMEN-STYQKALA-DTTQLY-EKKIAELNKKLEDEHACFE----GAVEQLDM-VKKLLSDYQNSN 217 (600)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~n-~~~~~~l~-~~~~~~-~~~~~~l~~~l~~e~~~~~----~~~~~~~~-~~~~~~~~q~~~ 217 (600)
++..|.-++.-.++...+- ......+. +++..+ .....+|...|.+=.+.+. ..-.+++. .+.-+.+++...
T Consensus 125 ~i~~L~eEl~fl~~~heeEi~~L~~~~~~~~~~e~~~~~~~dL~~~L~eiR~~ye~~~~~~~~e~e~~y~~k~~~l~~~~ 204 (312)
T PF00038_consen 125 QIQSLKEELEFLKQNHEEEIEELREQIQSSVTVEVDQFRSSDLSAALREIRAQYEEIAQKNREELEEWYQSKLEELRQQS 204 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSTT----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhccccccceeecccccccchhhhhhHHHHHHHHHhhhhhhhhhhcccccccccccc
Confidence 7777776665544332111 11111111 111111 1223344444443222221 11112222 333344333333
Q ss_pred -cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 007520 218 -QGQKEVHELCVKLKETRQLHESAVYEVQTLKSEYKNLLEEKETM 261 (600)
Q Consensus 218 -~~~~e~~~l~~~~~d~~~~~e~~~~el~~l~~~~~~l~~~~~~~ 261 (600)
....++...+..+.+++..+.++..++..+.+..+.|.......
T Consensus 205 ~~~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~l 249 (312)
T PF00038_consen 205 EKSSEELESAKEELKELRRQIQSLQAELESLRAKNASLERQLREL 249 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHH
Confidence 33335666677777777777776666666665555444444333
No 92
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=97.13 E-value=0.3 Score=54.60 Aligned_cols=119 Identities=20% Similarity=0.236 Sum_probs=55.9
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhhHHhhhhhhhhhhhHHHHHHHHHHhHhHHHhh-------hhhHHHHHHHHHHHhhhhh
Q 007520 143 KREKIVQLEISLKNSKQYEMENSTYQKALADTTQLYEKKIAELNKKLEDEHACF-------EGAVEQLDMVKKLLSDYQN 215 (600)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~l~~~l~~e~~~~-------~~~~~~~~~~~~~~~~~q~ 215 (600)
...++.+||-.++...|...|+.+....+.+-....+....+|+..|+...... ...+.+++.++..|...|.
T Consensus 218 ~~~ri~~LEedi~~l~qk~~E~e~~~~~lk~~~~elEq~~~eLk~rLk~~~~~~~~~~~~~~~~~~e~e~LkeqLr~~qe 297 (546)
T PF07888_consen 218 ARQRIRELEEDIKTLTQKEKEQEKELDKLKELKAELEQLEAELKQRLKETVVQLKQEETQAQQLQQENEALKEQLRSAQE 297 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 445556666666666666666655555555555555555555555554433322 2233333334433333322
Q ss_pred c-ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 007520 216 S-NQGQKEVHELCVKLKETRQLHESAVYEVQTLKSEYKNLLEEKETM 261 (600)
Q Consensus 216 ~-~~~~~e~~~l~~~~~d~~~~~e~~~~el~~l~~~~~~l~~~~~~~ 261 (600)
. ..+..+..-|...+.++...-.....||+.-+-+.++++.+.+..
T Consensus 298 ~lqaSqq~~~~L~~EL~~~~~~RDrt~aeLh~aRLe~aql~~qLad~ 344 (546)
T PF07888_consen 298 QLQASQQEAELLRKELSDAVNVRDRTMAELHQARLEAAQLKLQLADA 344 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 2 122233444455555555544444445444443344444444433
No 93
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=97.11 E-value=0.015 Score=61.39 Aligned_cols=187 Identities=21% Similarity=0.254 Sum_probs=125.8
Q ss_pred CchHHHhcccCCCCccccchHHHHhhcCchhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCcchHHHHHHcC
Q 007520 309 DYISKGSSRFGAPMSLQKSNPSRELSGQRATIAKICDEVGLPKILQLLTSEDPDVQIHAVKVVANLAAEDINQEKIVEEG 388 (600)
Q Consensus 309 g~i~~Lv~~L~s~~~~~r~~a~~~L~~~~~~~~~i~e~GgV~~Lv~LL~s~~~~vr~~Aa~aL~nLa~~~~~~~~iv~~G 388 (600)
..++.+...+.+.....+..++..+.. +-..-.++.+..++.+.++.+|..|+.+|+.+-. ..
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~-------~~~~~av~~l~~~l~d~~~~vr~~a~~aLg~~~~----------~~ 105 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVALGE-------LGSEEAVPLLRELLSDEDPRVRDAAADALGELGD----------PE 105 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhh-------hchHHHHHHHHHHhcCCCHHHHHHHHHHHHccCC----------hh
Confidence 456667777777655566655544211 1122348999999999999999999998776432 12
Q ss_pred CHHHHHHHHccCCCHHHHHHHHHHHHHhhcCCccHHHHHHhCchhhhHhhhccCCC---------H--HHHHHHHHHHHH
Q 007520 389 GLDALLLLLRTSQNTTILRVASGAIANLAMNEMNQGLIMSRGGGQLLAKTASKTDD---------P--QTLRMVAGALAN 457 (600)
Q Consensus 389 ~I~~Lv~lL~~~~~~~v~~~Al~aL~NLa~~~~~r~~I~~~G~I~~Lv~lL~~~~~---------~--~v~~~Aa~aL~n 457 (600)
.+++|+.++..+++..++..|.++|..+-.. .++.+++..+.+... + .++..++.+|..
T Consensus 106 a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~----------~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~l~~ 175 (335)
T COG1413 106 AVPPLVELLENDENEGVRAAAARALGKLGDE----------RALDPLLEALQDEDSGSAAAALDAALLDVRAAAAEALGE 175 (335)
T ss_pred HHHHHHHHHHcCCcHhHHHHHHHHHHhcCch----------hhhHHHHHHhccchhhhhhhhccchHHHHHHHHHHHHHH
Confidence 5899999998778888999999999887543 236777777744221 1 123333333332
Q ss_pred HhCCchhHHHHHHcChHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchhhhhcchhhHHHHHhCCcHHHHHHhhcCCCHH
Q 007520 458 LCGNEKLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSKTNSAS 537 (600)
Q Consensus 458 La~~~e~r~~i~~~G~i~~Lv~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~q~~~~~r~~l~e~g~l~~Lv~Ll~s~~~~ 537 (600)
+.+...++.+..++.+.+..|+..|+.+|..+...+ ....+.+...+.+++..
T Consensus 176 ----------~~~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~-----------------~~~~~~l~~~~~~~~~~ 228 (335)
T COG1413 176 ----------LGDPEAIPLLIELLEDEDADVRRAAASALGQLGSEN-----------------VEAADLLVKALSDESLE 228 (335)
T ss_pred ----------cCChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch-----------------hhHHHHHHHHhcCCCHH
Confidence 223346778888898888899999999999987541 23456666667777777
Q ss_pred HHHHHHHHHHHh
Q 007520 538 TRRHVELALCHL 549 (600)
Q Consensus 538 v~~~Aa~aL~nL 549 (600)
++..++.+|..+
T Consensus 229 vr~~~~~~l~~~ 240 (335)
T COG1413 229 VRKAALLALGEI 240 (335)
T ss_pred HHHHHHHHhccc
Confidence 777777666555
No 94
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=97.10 E-value=0.017 Score=62.37 Aligned_cols=184 Identities=10% Similarity=0.031 Sum_probs=135.1
Q ss_pred CcchHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcCCccHHHHHHhCchhhhHhhhccC-CCHHHHHHHHHHH
Q 007520 377 EDINQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMNEMNQGLIMSRGGGQLLAKTASKT-DDPQTLRMVAGAL 455 (600)
Q Consensus 377 ~~~~~~~iv~~G~I~~Lv~lL~~~~~~~v~~~Al~aL~NLa~~~~~r~~I~~~G~I~~Lv~lL~~~-~~~~v~~~Aa~aL 455 (600)
++..+..+.-....+.+..++- +++.+++..+.++++.+..++..-..+...+.--.++..|... .+..-+..|...+
T Consensus 14 ~p~l~~~~~~~~~~~~i~~~lL-~~~~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkli 92 (371)
T PF14664_consen 14 HPTLKYDLVLSFFGERIQCMLL-SDSKEVRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLI 92 (371)
T ss_pred CchhhhhhhHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHH
Confidence 4544444443334444544444 3448899999999999999988888888877555566666543 3345677888888
Q ss_pred HHHhCCchhHHHHHHcChHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchhhhhcchhhHHHHHhCCcHHHHHHhhcCCC
Q 007520 456 ANLCGNEKLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSKTNS 535 (600)
Q Consensus 456 ~nLa~~~e~r~~i~~~G~i~~Lv~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~q~~~~~r~~l~e~g~l~~Lv~Ll~s~~ 535 (600)
+.+..-+.+... ...|++..++.+..+.++..+..|..+|+-|+..+|+ .+...||+.+|++.+.++.
T Consensus 93 R~~l~~~~~~~~-~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~-----------lv~~~gG~~~L~~~l~d~~ 160 (371)
T PF14664_consen 93 RAFLEIKKGPKE-IPRGVVRALVAIAEHEDDRLRRICLETLCELALLNPE-----------LVAECGGIRVLLRALIDGS 160 (371)
T ss_pred HHHHHhcCCccc-CCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHH-----------HHHHcCCHHHHHHHHHhcc
Confidence 877644332221 3568899999999999999999999999999988765 3667999999999988887
Q ss_pred HHHHHHHHHHHHHhhcCchhHHHHHHcccHHHHHHhhh
Q 007520 536 ASTRRHVELALCHLAQNEDNARDFISRGGAKELVQISI 573 (600)
Q Consensus 536 ~~v~~~Aa~aL~nLa~~~~~~~~lv~~G~l~~Lv~ll~ 573 (600)
..+....+.++.++-.++..++.+...--+..+.....
T Consensus 161 ~~~~~~l~~~lL~lLd~p~tR~yl~~~~dL~~l~apft 198 (371)
T PF14664_consen 161 FSISESLLDTLLYLLDSPRTRKYLRPGFDLESLLAPFT 198 (371)
T ss_pred HhHHHHHHHHHHHHhCCcchhhhhcCCccHHHHHHhhh
Confidence 77999999999999988888877765444555544443
No 95
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.09 E-value=0.011 Score=68.97 Aligned_cols=210 Identities=20% Similarity=0.167 Sum_probs=151.9
Q ss_pred cCCHHHHHHhhCCCCHHHHHHHHHHHHH-hhCCcchHHHHHHcCCHHHHHHHHccC--CCHHHHHHHHHHHHHhhcC-Cc
Q 007520 346 EVGLPKILQLLTSEDPDVQIHAVKVVAN-LAAEDINQEKIVEEGGLDALLLLLRTS--QNTTILRVASGAIANLAMN-EM 421 (600)
Q Consensus 346 ~GgV~~Lv~LL~s~~~~vr~~Aa~aL~n-La~~~~~~~~iv~~G~I~~Lv~lL~~~--~~~~v~~~Al~aL~NLa~~-~~ 421 (600)
-|-.|-++.+|.+...+++-.-+-+=+. |+.++..+..+++.+|-...+..|.++ -+++-+..|+.+|+.++.+ +-
T Consensus 511 VGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~l 590 (1387)
T KOG1517|consen 511 VGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKL 590 (1387)
T ss_pred cchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccch
Confidence 3446888899999999988776655555 555888888999988988888888752 2446788899999999998 77
Q ss_pred cHHHHHHhCchhhhHhhhccCCCHHHHHHHHHHHHHHh-CCchhHHHHHHcChHHHHHHHHcCCCHHHHHHHHHHHHHhh
Q 007520 422 NQGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLC-GNEKLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFA 500 (600)
Q Consensus 422 ~r~~I~~~G~I~~Lv~lL~~~~~~~v~~~Aa~aL~nLa-~~~e~r~~i~~~G~i~~Lv~lL~s~~~~v~~~A~~aL~nLa 500 (600)
.+..-.+.+.|..=+..|.++..|-++.-+|-+|+.|= .++..|=.=++.++...|+.+|.++-+.||.+|+.||..|.
T Consensus 591 GQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl 670 (1387)
T KOG1517|consen 591 GQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFL 670 (1387)
T ss_pred hHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHh
Confidence 88888888888866677744335667777777999885 44555554466788899999999999999999999999997
Q ss_pred cCCchhhhhcchhhH---------HHHHhC---CcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCchhH
Q 007520 501 KCESRAIVQGQRKGR---------SHLMED---SALEWLIANSKTNSASTRRHVELALCHLAQNEDNA 556 (600)
Q Consensus 501 ~~~~~~~~q~~~~~r---------~~l~e~---g~l~~Lv~Ll~s~~~~v~~~Aa~aL~nLa~~~~~~ 556 (600)
....+....+ ...+ ..-++. .|...++.++..+.+-++...+.+|.+++......
T Consensus 671 ~~~~d~fde~-~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~ev~v~ls~~~~g~~~~ 737 (1387)
T KOG1517|consen 671 SNGSDNFDEQ-TLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTEVVVALSHFVVGYVSH 737 (1387)
T ss_pred cccccccchh-hhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchHHHHHHHHHHHHHHHhhHHH
Confidence 6421100000 0011 011121 12246777889999999999999999987655443
No 96
>PRK03918 chromosome segregation protein; Provisional
Probab=97.07 E-value=1.1 Score=53.75 Aligned_cols=9 Identities=0% Similarity=0.006 Sum_probs=3.9
Q ss_pred HHHHHHHHh
Q 007520 491 QVARGLANF 499 (600)
Q Consensus 491 ~A~~aL~nL 499 (600)
.+-..+..|
T Consensus 748 ~~~~if~~l 756 (880)
T PRK03918 748 IASEIFEEL 756 (880)
T ss_pred HHHHHHHHH
Confidence 334444444
No 97
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=97.06 E-value=0.019 Score=57.22 Aligned_cols=184 Identities=15% Similarity=0.065 Sum_probs=110.8
Q ss_pred CCCCHHHHHHHHHHHHHhhC-C--cchHHHHHHc--CCHHHHHHHHccCCCHHHHHHHHHHHHHhhcC-CccHHHHHHhC
Q 007520 357 TSEDPDVQIHAVKVVANLAA-E--DINQEKIVEE--GGLDALLLLLRTSQNTTILRVASGAIANLAMN-EMNQGLIMSRG 430 (600)
Q Consensus 357 ~s~~~~vr~~Aa~aL~nLa~-~--~~~~~~iv~~--G~I~~Lv~lL~~~~~~~v~~~Al~aL~NLa~~-~~~r~~I~~~G 430 (600)
.+.+...|..|+..|..+.. + ......++.. ..+..++..+. +....+...|+.++..|+.. ...-...++ .
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~-d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~-~ 94 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLS-DLRSKVSKTACQLLSDLARQLGSHFEPYAD-I 94 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S--HH---HHHHHHHHHHHHHHHHGGGGHHHHH-H
T ss_pred CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHhHhHHHHHH-H
Confidence 57788999999999998876 3 2334444332 23455555555 33455788899999999977 333333333 3
Q ss_pred chhhhHhhhccCCCHHHHHHHHHHHHHHhCCchhHHHHHHcChHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchhhhhc
Q 007520 431 GGQLLAKTASKTDDPQTLRMVAGALANLCGNEKLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFAKCESRAIVQG 510 (600)
Q Consensus 431 ~I~~Lv~lL~~~~~~~v~~~Aa~aL~nLa~~~e~r~~i~~~G~i~~Lv~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~q~ 510 (600)
.+|.|+..+.+ ....++..|..+|..++..-..-..+ .++.+...+.+.++.++..++..|..+...-+...
T Consensus 95 ~l~~Ll~~~~~-~~~~i~~~a~~~L~~i~~~~~~~~~~----~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~--- 166 (228)
T PF12348_consen 95 LLPPLLKKLGD-SKKFIREAANNALDAIIESCSYSPKI----LLEILSQGLKSKNPQVREECAEWLAIILEKWGSDS--- 166 (228)
T ss_dssp HHHHHHHGGG----HHHHHHHHHHHHHHHTTS-H--HH----HHHHHHHHTT-S-HHHHHHHHHHHHHHHTT--------
T ss_pred HHHHHHHHHcc-ccHHHHHHHHHHHHHHHHHCCcHHHH----HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchH---
Confidence 78889998855 45567777778999888654311111 14556667789999999999999999875432000
Q ss_pred chhhHHHHHhCCcHHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 007520 511 QRKGRSHLMEDSALEWLIANSKTNSASTRRHVELALCHLAQ 551 (600)
Q Consensus 511 ~~~~r~~l~e~g~l~~Lv~Ll~s~~~~v~~~Aa~aL~nLa~ 551 (600)
........-...++.+...+.++++.||..|-.+++.+..
T Consensus 167 -~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~ 206 (228)
T PF12348_consen 167 -SVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYS 206 (228)
T ss_dssp -GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHH
T ss_pred -hhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Confidence 0000001113467788889999999999999999999954
No 98
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=97.03 E-value=0.3 Score=54.57 Aligned_cols=143 Identities=20% Similarity=0.194 Sum_probs=94.9
Q ss_pred chHHHhHHHHHHHHHHhHHHH-----------HHHHhhhccHHHHHHHHHHHHHHHHHHhhhH---HHHHHHHHHHHHHH
Q 007520 14 DYESLCRKLETQVDHLTAEIE-----------RKQKLRENDKCELEKLLRECQISYDEAKDNL---VTQVELLTAKIEMQ 79 (600)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 79 (600)
||=.=-|-||+|=-.|..++. .-+-.||.|+-.+.+.+.++....++++.++ ..|+..|+..+++.
T Consensus 53 ~YIekVR~LEaqN~~L~~di~~lr~~~~~~ts~ik~~ye~El~~ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~ 132 (546)
T KOG0977|consen 53 VYIEKVRFLEAQNRKLEHDINLLRGVVGRETSGIKAKYEAELATARKLLDETARERAKLEIEITKLREELKELRKKLEKA 132 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 454455666666655554443 2234558788888899999999999999876 56888888888888
Q ss_pred HHhhhc---hhHHHHHHHHHHHhhh---HHHHHHHHHhHHHHHHHhhhHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHh
Q 007520 80 QKLREN---DKYEFEKQLRESQISY---DESMRNLVTRSEFLEKENAHLELEVEKILGELNHQKDQNNLKREKIVQLEIS 153 (600)
Q Consensus 80 ~~~~~~---~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (600)
.+.+.. +.+.+++-+...+..| .-.++.++.....|.+||.+|..++.++++.+++....-....-+++.|..+
T Consensus 133 ~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Llee 212 (546)
T KOG0977|consen 133 EKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQLDDETLLRVDLQNRVQTLLEE 212 (546)
T ss_pred HHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 766622 2233333333333332 2345667777778899999999999998888877776655555556655555
Q ss_pred hhh
Q 007520 154 LKN 156 (600)
Q Consensus 154 ~~~ 156 (600)
|.-
T Consensus 213 l~f 215 (546)
T KOG0977|consen 213 LAF 215 (546)
T ss_pred HHH
Confidence 544
No 99
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=97.01 E-value=1.5 Score=55.25 Aligned_cols=150 Identities=17% Similarity=0.233 Sum_probs=89.9
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHhh-------hHHHHH
Q 007520 54 CQISYDEAKDNLVTQVELLTAKIEMQQKLRENDKYEFEKQLRESQISYDESMRNLVTRSEFLEKENA-------HLELEV 126 (600)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~e~~-------~~~~~~ 126 (600)
|..+|.+.+. ++..|+-++++..+.. ..+.+.+...-..|.-.+..+...+..+..+++ -|+..+
T Consensus 803 ~e~~i~eL~~----el~~lk~klq~~~~~~----r~l~~~~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~le~k~ 874 (1822)
T KOG4674|consen 803 CESRIKELER----ELQKLKKKLQEKSSDL----RELTNSLEKQLENAQNLVDELESELKSLLTSLDSVSTNIAKLEIKL 874 (1822)
T ss_pred HHHHHHHHHH----HHHHHHHHHHHHHHHH----HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444 7778888888888777 566666666666666665555555554444444 344444
Q ss_pred HHHHhhhhhhhh----hh-------------------hhHHHHHHHHHHhhhhhhhhhhhhhHHhhhhhhhhhhhHHHHH
Q 007520 127 EKILGELNHQKD----QN-------------------NLKREKIVQLEISLKNSKQYEMENSTYQKALADTTQLYEKKIA 183 (600)
Q Consensus 127 ~~~~~~~~~~~~----~~-------------------~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~ 183 (600)
..|.+.|...+. .+ ....+-..+|..++-++.||+..++....+|...-..+++--.
T Consensus 875 ~eL~k~l~~~~~~~~~l~~~~~~~d~~~~~~~Lr~~~eq~~~l~~~L~~a~s~i~~yqe~~~s~eqsl~~~ks~lde~~~ 954 (1822)
T KOG4674|consen 875 SELEKRLKSAKTQLLNLDSKSSNEDATILEDTLRKELEEITDLKEELTDALSQIREYQEEYSSLEQSLESVKSELDETRL 954 (1822)
T ss_pred HHHHHHHHHhHHHHhhccccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444411111 11 1222334677888888999998888888877776666666666
Q ss_pred HHHHHhHhHHHhhhhhHHHHHHHHHHHh
Q 007520 184 ELNKKLEDEHACFEGAVEQLDMVKKLLS 211 (600)
Q Consensus 184 ~l~~~l~~e~~~~~~~~~~~~~~~~~~~ 211 (600)
++...|+..+.-..+.+..+..|+.-++
T Consensus 955 ~~ea~ie~~~~k~tslE~~ls~L~~~~~ 982 (1822)
T KOG4674|consen 955 ELEAKIESLHKKITSLEEELSELEKEIE 982 (1822)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666666666555444444
No 100
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=96.99 E-value=0.0017 Score=46.14 Aligned_cols=39 Identities=21% Similarity=0.463 Sum_probs=35.9
Q ss_pred chhHHHHHHcChHHHHHHHHcCCCHHHHHHHHHHHHHhh
Q 007520 462 EKLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFA 500 (600)
Q Consensus 462 ~e~r~~i~~~G~i~~Lv~lL~s~~~~v~~~A~~aL~nLa 500 (600)
++++..+++.|+++.|+.++.++++.++..|+++|+||+
T Consensus 2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 347778899999999999999999999999999999997
No 101
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=96.98 E-value=0.0054 Score=66.98 Aligned_cols=246 Identities=15% Similarity=0.109 Sum_probs=164.9
Q ss_pred HHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhC-CcchHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcCCc
Q 007520 343 ICDEVGLPKILQLLTSEDPDVQIHAVKVVANLAA-EDINQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMNEM 421 (600)
Q Consensus 343 i~e~GgV~~Lv~LL~s~~~~vr~~Aa~aL~nLa~-~~~~~~~iv~~G~I~~Lv~lL~~~~~~~v~~~Al~aL~NLa~~~~ 421 (600)
+.....+++|+.+|+.++..+...+...++|+.. +..-+..+...|.|..|+.++. +.|..++....|.|+.+..+.+
T Consensus 427 L~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~-sKDdaLqans~wvlrHlmyncq 505 (743)
T COG5369 427 LLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVM-SKDDALQANSEWVLRHLMYNCQ 505 (743)
T ss_pred ccccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhh-cchhhhhhcchhhhhhhhhcCc
Confidence 3344558899999999888888888999999887 7778999999999999999998 5677899999999999998833
Q ss_pred c--HHHHHHhCchhhhHhhhccCCCHHHHHHHHHHHHHHhCC----chhHHHHHHc----ChHHHHHHHHcCCCHHHHHH
Q 007520 422 N--QGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLCGN----EKLHTMLEED----GAIKALLAMVRSGNIDVIAQ 491 (600)
Q Consensus 422 ~--r~~I~~~G~I~~Lv~lL~~~~~~~v~~~Aa~aL~nLa~~----~e~r~~i~~~----G~i~~Lv~lL~s~~~~v~~~ 491 (600)
+ +-.....-|+..++.+.. .+.-.++..+..+|+|+..+ ++.+..+... -....|+..+...+|-....
T Consensus 506 ~~ekf~~Lakig~~kvl~~~N-Dpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~ylfk~l~~k~e~~np~~i~~ 584 (743)
T COG5369 506 KNEKFKFLAKIGVEKVLSYTN-DPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYLFKRLIDKYEENNPMEILE 584 (743)
T ss_pred chhhhhhHHhcCHHHHHHHhc-CcccccHHHHHHHHHhcccccccccccceeEEecChHHHHHHHHHHHHHhcCchhhhh
Confidence 3 445566667888888873 35558999999999999643 2233322221 14556777778888887888
Q ss_pred HHHHHHHhhcCCchhh--hhcchh----hHHHHHh------------------------------CCcHHHHHHhh----
Q 007520 492 VARGLANFAKCESRAI--VQGQRK----GRSHLME------------------------------DSALEWLIANS---- 531 (600)
Q Consensus 492 A~~aL~nLa~~~~~~~--~q~~~~----~r~~l~e------------------------------~g~l~~Lv~Ll---- 531 (600)
.+..|.+++.++.+-. .+...+ ....+.+ .|+...++..-
T Consensus 585 ~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil~e~a~r~~L~pg~~~~~v~~p~s~~~v~l~e~~d~f~r~~~~~p~~D 664 (743)
T COG5369 585 GCYILVRNAACDDTLDYIVQSQEDMLDSIFEILDEFAGRTPLSPGSKEEHVLLPISYTIVNLSENSDKFKRLVLTTPHLD 664 (743)
T ss_pred hHHHHHHHHhccchHHHHHHhHHHHHHHHHHHHHHHcccCCCCCCCCcccccCccceeeecccccccccccceecCCCcc
Confidence 8999999988876421 000000 0000000 12222222210
Q ss_pred --c----CCCHHHHHHHHHHHHHhhcCch---------hHHHHHHcccHHHHHHhhhcCChHHHHHHHHHHHhc
Q 007520 532 --K----TNSASTRRHVELALCHLAQNED---------NARDFISRGGAKELVQISIESSREDIRNLAKKTMKS 590 (600)
Q Consensus 532 --~----s~~~~v~~~Aa~aL~nLa~~~~---------~~~~lv~~G~l~~Lv~ll~~~~~~~ir~~A~~~L~~ 590 (600)
. .++..+--.+.|.+.|+.+... .+..+..+.|+..++..+...+++.+|+.+..+|.+
T Consensus 665 ~~~~d~~~~NdE~~~agiw~~in~~w~~~~~~vtratveR~~iL~~~G~~e~l~k~q~~~Sl~vrek~~taL~~ 738 (743)
T COG5369 665 NMKKDSTTRNDELSIAGIWIIINLSWKEDGSEVTRATVERIQILCANGIREWLVKIQAKDSLIVREKIGTALEN 738 (743)
T ss_pred ccccccCCCchhhhhccceEEEecccCccCCccchhhHHHHHHHHHccHHHHHHHHhccCcHHHHHHHHHHHHh
Confidence 0 1245577788899888865332 223333444556666666666667899999888764
No 102
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.98 E-value=0.064 Score=57.69 Aligned_cols=238 Identities=18% Similarity=0.118 Sum_probs=161.0
Q ss_pred cccCchHHHhcccCCCCccccchHHH---Hhhc------C----chhHHHHHhcCCHHHHHHhhCCC------CHHHHHH
Q 007520 306 YTKDYISKGSSRFGAPMSLQKSNPSR---ELSG------Q----RATIAKICDEVGLPKILQLLTSE------DPDVQIH 366 (600)
Q Consensus 306 ~~~g~i~~Lv~~L~s~~~~~r~~a~~---~L~~------~----~~~~~~i~e~GgV~~Lv~LL~s~------~~~vr~~ 366 (600)
++..+++.|+.+++..++......+. .+.. . ..-+..+++.+.++.|+.-+..- .......
T Consensus 122 veln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvqnveRLdEsvkeea~gv~~ 201 (536)
T KOG2734|consen 122 VELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQNVERLDESVKEEADGVHN 201 (536)
T ss_pred HHhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHHHHHHhhhcchhhhhhhHH
Confidence 56678888889988876655443332 1211 1 12455677777788888666422 2334455
Q ss_pred HHHHHHHhhC-CcchHHHHHHcCCHHHHHHHHc-cCCCHHHHHHHHHHHHHhhcC-CccHHHHHHhCchhhhHhhhcc--
Q 007520 367 AVKVVANLAA-EDINQEKIVEEGGLDALLLLLR-TSQNTTILRVASGAIANLAMN-EMNQGLIMSRGGGQLLAKTASK-- 441 (600)
Q Consensus 367 Aa~aL~nLa~-~~~~~~~iv~~G~I~~Lv~lL~-~~~~~~v~~~Al~aL~NLa~~-~~~r~~I~~~G~I~~Lv~lL~~-- 441 (600)
+..++-|+.. .+..+..+++.|.+..|+.-+. ..+-..-...|...|+-+..+ ..++......+||..++.-+.-
T Consensus 202 ~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~~~~l~GiD~lL~~la~yk 281 (536)
T KOG2734|consen 202 TLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKLLGPLDGIDVLLRQLAVYK 281 (536)
T ss_pred HHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhhhcCcccHHHHHhhcchhh
Confidence 6677778887 6778899999988888887554 223334567788888888877 5588888888999998876632
Q ss_pred CCC------HHHHHHHHHHHHHHhCCchhHHHHHHcChHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchhhhhcchhhH
Q 007520 442 TDD------PQTLRMVAGALANLCGNEKLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFAKCESRAIVQGQRKGR 515 (600)
Q Consensus 442 ~~~------~~v~~~Aa~aL~nLa~~~e~r~~i~~~G~i~~Lv~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~q~~~~~r 515 (600)
..+ .+...+..-+||.+...+.++..+....|+....-+++. ....+-.+.++|-......+. ..+.
T Consensus 282 ~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGlqLm~Lmlr~-Kk~sr~SalkvLd~am~g~~g------t~~C 354 (536)
T KOG2734|consen 282 RHDPATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGLQLMNLMLRE-KKVSRGSALKVLDHAMFGPEG------TPNC 354 (536)
T ss_pred ccCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccHHHHHHHHHH-HHHhhhhHHHHHHHHHhCCCc------hHHH
Confidence 112 245566667888888899999999998888877766765 333456678888877755431 2455
Q ss_pred HHHHhCCcHHHHHHhhc-CC---------CHHHHHHHHHHHHHhh
Q 007520 516 SHLMEDSALEWLIANSK-TN---------SASTRRHVELALCHLA 550 (600)
Q Consensus 516 ~~l~e~g~l~~Lv~Ll~-s~---------~~~v~~~Aa~aL~nLa 550 (600)
..+++.+|+..+..+.. .+ ....-.+.+..|+.|-
T Consensus 355 ~kfVe~lGLrtiF~~FMk~p~k~~~~~~t~~e~eEhv~siiaSl~ 399 (536)
T KOG2734|consen 355 NKFVEILGLRTIFPLFMKTPLKRKKRKISADEHEEHVCSILASLL 399 (536)
T ss_pred HHHHHHHhHHHHHHHHhhCccchhcccCcHHHHHHHHHHHHHHHH
Confidence 66888889988888532 22 2445566777776663
No 103
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=96.98 E-value=0.012 Score=65.14 Aligned_cols=176 Identities=15% Similarity=0.096 Sum_probs=122.7
Q ss_pred HHHHHHHhhcCCccHHHHHHhCchhhhHhhh---------ccCCCHHHHHHHHHHHHHHhC-CchhHHHHHHcChHHHHH
Q 007520 409 ASGAIANLAMNEMNQGLIMSRGGGQLLAKTA---------SKTDDPQTLRMVAGALANLCG-NEKLHTMLEEDGAIKALL 478 (600)
Q Consensus 409 Al~aL~NLa~~~~~r~~I~~~G~I~~Lv~lL---------~~~~~~~v~~~Aa~aL~nLa~-~~e~r~~i~~~G~i~~Lv 478 (600)
|+.+|+-|++++.+...+....++..|+.+. ....++.+...|..||+|+.. ++..|..+.+.|+.+.++
T Consensus 1 ~L~~LRiLsRd~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~ 80 (446)
T PF10165_consen 1 CLETLRILSRDPTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLC 80 (446)
T ss_pred CHHHHHHHccCcccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHH
Confidence 4567888888888888888877888887776 455788999999999999974 578999999999999999
Q ss_pred HHHcCC-----CHHHHHHHHHHHHHhhcCCchhhhhcchhhHHHHHh-CCcHHHHHHhhcC-----------------CC
Q 007520 479 AMVRSG-----NIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLME-DSALEWLIANSKT-----------------NS 535 (600)
Q Consensus 479 ~lL~s~-----~~~v~~~A~~aL~nLa~~~~~~~~q~~~~~r~~l~e-~g~l~~Lv~Ll~s-----------------~~ 535 (600)
..|+.. +.++..-.+++|--++... ...+..+++ .+++..|+..+.. .+
T Consensus 81 ~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~--------~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~ 152 (446)
T PF10165_consen 81 ERLKNYSDSSQPSDVEFLDSRLLFLLTALR--------PDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMD 152 (446)
T ss_pred HHHHcccccCCChhHHHHHHHHHHHHhcCC--------hhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcch
Confidence 999755 7888888999998888665 334544555 5777777764321 13
Q ss_pred HHHHHHHHHHHHHhhcCchhHHHHHHcccHHHHHHhhhcC--------ChHHHHHHHHHHHhcCc
Q 007520 536 ASTRRHVELALCHLAQNEDNARDFISRGGAKELVQISIES--------SREDIRNLAKKTMKSNP 592 (600)
Q Consensus 536 ~~v~~~Aa~aL~nLa~~~~~~~~lv~~G~l~~Lv~ll~~~--------~~~~ir~~A~~~L~~~p 592 (600)
......+..++.|+..+......-...+.++.|+.++... ........++.+|.+.|
T Consensus 153 ~~~l~EiLKllFNit~~~~~~~~~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlp 217 (446)
T PF10165_consen 153 EEALSEILKLLFNITLHYPKSVPEEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLP 217 (446)
T ss_pred HHHHHHHHHHHHHhhhccCcccchhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCC
Confidence 3456667888888865443222212233444554444322 11236677777777666
No 104
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=96.98 E-value=0.13 Score=53.52 Aligned_cols=277 Identities=17% Similarity=0.138 Sum_probs=177.6
Q ss_pred ccCchHHHhcccCCCCccccchHHHH----hhcCc----hhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCc
Q 007520 307 TKDYISKGSSRFGAPMSLQKSNPSRE----LSGQR----ATIAKICDEVGLPKILQLLTSEDPDVQIHAVKVVANLAAED 378 (600)
Q Consensus 307 ~~g~i~~Lv~~L~s~~~~~r~~a~~~----L~~~~----~~~~~i~e~GgV~~Lv~LL~s~~~~vr~~Aa~aL~nLa~~~ 378 (600)
...-+|.|-..+..++..++..+.+. +...+ ..+..++..|-++.++..+..+|.+|-..|...|..++..+
T Consensus 80 apnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggeddeVAkAAiesikrialfp 159 (524)
T KOG4413|consen 80 APNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRIALFP 159 (524)
T ss_pred chhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcH
Confidence 34445666667777777777776654 22222 23444567777888889999999999999999999999988
Q ss_pred chHHHHHHcCCHHHHH--HHHccCCCHHHHHHHHHHHHHhhcC-CccHHHHHHhCchhhhHhhhccCCCHHHHHHHHHHH
Q 007520 379 INQEKIVEEGGLDALL--LLLRTSQNTTILRVASGAIANLAMN-EMNQGLIMSRGGGQLLAKTASKTDDPQTLRMVAGAL 455 (600)
Q Consensus 379 ~~~~~iv~~G~I~~Lv--~lL~~~~~~~v~~~Al~aL~NLa~~-~~~r~~I~~~G~I~~Lv~lL~~~~~~~v~~~Aa~aL 455 (600)
..-..+.......++- .+.... +.-++......+-.+... +......-..|.+..|..-|..+.|.-++..++...
T Consensus 160 aaleaiFeSellDdlhlrnlaakc-ndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElv 238 (524)
T KOG4413|consen 160 AALEAIFESELLDDLHLRNLAAKC-NDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELV 238 (524)
T ss_pred HHHHHhcccccCChHHHhHHHhhh-hhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHH
Confidence 8877777766655542 222212 223455566666666544 666666666888888888786667777888888999
Q ss_pred HHHhCCchhHHHHHHcChHHHHHHHHc--CCCHHHHHHHHHHHHHhhcCCchhhhhcchhhHHHHHh--CCcHHHHHHhh
Q 007520 456 ANLCGNEKLHTMLEEDGAIKALLAMVR--SGNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLME--DSALEWLIANS 531 (600)
Q Consensus 456 ~nLa~~~e~r~~i~~~G~i~~Lv~lL~--s~~~~v~~~A~~aL~nLa~~~~~~~~q~~~~~r~~l~e--~g~l~~Lv~Ll 531 (600)
..|+.....+..+...|.|..+...+. +.+|--...++.....+-... ++.. ..-+.+.+ --++.-.+.++
T Consensus 239 teLaeteHgreflaQeglIdlicnIIsGadsdPfekfralmgfgkffgke--aimd---vseeaicealiiaidgsfEmi 313 (524)
T KOG4413|consen 239 TELAETEHGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKE--AIMD---VSEEAICEALIIAIDGSFEMI 313 (524)
T ss_pred HHHHHHhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcch--HHhh---cCHHHHHHHHHHHHHhhHHhh
Confidence 999988888999999999999999985 344544444444444432111 1100 00011111 01344455577
Q ss_pred cCCCHHHHHHHHHHHHHhhcCchhHHHHHHccc--HHHHHHhhhcCChHHHHHHHHHHHh
Q 007520 532 KTNSASTRRHVELALCHLAQNEDNARDFISRGG--AKELVQISIESSREDIRNLAKKTMK 589 (600)
Q Consensus 532 ~s~~~~v~~~Aa~aL~nLa~~~~~~~~lv~~G~--l~~Lv~ll~~~~~~~ir~~A~~~L~ 589 (600)
...|+..+..|..++..|.++.+.++-+...|- ...|+.-+-+.+...-.+++.+.|.
T Consensus 314 EmnDpdaieaAiDalGilGSnteGadlllkTgppaaehllarafdqnahakqeaaihaLa 373 (524)
T KOG4413|consen 314 EMNDPDAIEAAIDALGILGSNTEGADLLLKTGPPAAEHLLARAFDQNAHAKQEAAIHALA 373 (524)
T ss_pred hcCCchHHHHHHHHHHhccCCcchhHHHhccCChHHHHHHHHHhcccccchHHHHHHHHH
Confidence 788999999999999999888887766666543 2333322222232234455555554
No 105
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=96.96 E-value=0.0025 Score=55.68 Aligned_cols=67 Identities=28% Similarity=0.266 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHhhC-CcchHHHHHHcCCHHHHHHHHc-cCCCHHHHHHHHHHHHHhhcC-CccHHHHHHh
Q 007520 363 VQIHAVKVVANLAA-EDINQEKIVEEGGLDALLLLLR-TSQNTTILRVASGAIANLAMN-EMNQGLIMSR 429 (600)
Q Consensus 363 vr~~Aa~aL~nLa~-~~~~~~~iv~~G~I~~Lv~lL~-~~~~~~v~~~Al~aL~NLa~~-~~~r~~I~~~ 429 (600)
++...+.+|+||++ ++.++..+.+.||+|.++.... +..+|-+++.|.+|++||+.. ++|+..|.+.
T Consensus 2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~L 71 (102)
T PF09759_consen 2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQL 71 (102)
T ss_pred cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence 35667889999998 8889999999999999998865 356788999999999999987 8888888773
No 106
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.94 E-value=0.011 Score=68.78 Aligned_cols=197 Identities=16% Similarity=0.114 Sum_probs=150.9
Q ss_pred cccCchHHHhcccCCCCccccchHH--HH--hhcCchhHHHHHhcCCHHHHHHhhCC-C--CHHHHHHHHHHHHHhhC-C
Q 007520 306 YTKDYISKGSSRFGAPMSLQKSNPS--RE--LSGQRATIAKICDEVGLPKILQLLTS-E--DPDVQIHAVKVVANLAA-E 377 (600)
Q Consensus 306 ~~~g~i~~Lv~~L~s~~~~~r~~a~--~~--L~~~~~~~~~i~e~GgV~~Lv~LL~s-~--~~~vr~~Aa~aL~nLa~-~ 377 (600)
+.-|++|..+.+|.+.....|..-+ .+ |+.++++...++..+|-..+++.|.. . +++-|..|+-+|+.++. +
T Consensus 509 LsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf 588 (1387)
T KOG1517|consen 509 LSVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNF 588 (1387)
T ss_pred hccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHccc
Confidence 7789999999999999877776433 33 88899999999999998888888865 2 45778889999999887 5
Q ss_pred cchHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcC-CccHHHHHHhCchhhhHhhhccCCCHHHHHHHHHHHH
Q 007520 378 DINQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMN-EMNQGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALA 456 (600)
Q Consensus 378 ~~~~~~iv~~G~I~~Lv~lL~~~~~~~v~~~Al~aL~NLa~~-~~~r~~I~~~G~I~~Lv~lL~~~~~~~v~~~Aa~aL~ 456 (600)
+-.+....+.+.+..-+..|.+++.+-++.-++-+|..|=.+ +.+|-.=++.++...|+.+|.+ +-|+|+.+|+.||.
T Consensus 589 ~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD-~vpEVRaAAVFALg 667 (1387)
T KOG1517|consen 589 KLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSD-PVPEVRAAAVFALG 667 (1387)
T ss_pred chhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcC-ccHHHHHHHHHHHH
Confidence 666777888887887777787444566777788888888776 7888888889999999999965 77899999999999
Q ss_pred HHhCC-----chhHHHH------------HHcC---hHHHHHHHHcCCCHHHHHHHHHHHHHhhcCC
Q 007520 457 NLCGN-----EKLHTML------------EEDG---AIKALLAMVRSGNIDVIAQVARGLANFAKCE 503 (600)
Q Consensus 457 nLa~~-----~e~r~~i------------~~~G---~i~~Lv~lL~s~~~~v~~~A~~aL~nLa~~~ 503 (600)
.+.++ ++....+ ++.- +...++.++..+.+-|+..++-+|+.++...
T Consensus 668 tfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~ev~v~ls~~~~g~ 734 (1387)
T KOG1517|consen 668 TFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTEVVVALSHFVVGY 734 (1387)
T ss_pred HHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchHHHHHHHHHHHHHHHhh
Confidence 88643 2211111 1111 2236677778899999999999999887653
No 107
>PRK11637 AmiB activator; Provisional
Probab=96.92 E-value=0.5 Score=52.02 Aligned_cols=26 Identities=15% Similarity=0.143 Sum_probs=11.2
Q ss_pred hHHhhhhhhhhhhhHHHHHHHHHHhH
Q 007520 165 STYQKALADTTQLYEKKIAELNKKLE 190 (600)
Q Consensus 165 ~~~~~~l~~~~~~~~~~~~~l~~~l~ 190 (600)
+.|...+.+.-..+=.++.+..+.|+
T Consensus 158 ~~~l~~i~~~d~~~l~~l~~~~~~L~ 183 (428)
T PRK11637 158 LAYFGYLNQARQETIAELKQTREELA 183 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444
No 108
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.91 E-value=0.0027 Score=70.76 Aligned_cols=248 Identities=13% Similarity=0.128 Sum_probs=148.3
Q ss_pred HhcccCCCCccccchHHHH-hhcCchhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhC-C------cchHHHHH
Q 007520 314 GSSRFGAPMSLQKSNPSRE-LSGQRATIAKICDEVGLPKILQLLTSEDPDVQIHAVKVVANLAA-E------DINQEKIV 385 (600)
Q Consensus 314 Lv~~L~s~~~~~r~~a~~~-L~~~~~~~~~i~e~GgV~~Lv~LL~s~~~~vr~~Aa~aL~nLa~-~------~~~~~~iv 385 (600)
+.....+....++..|+.. |..++..+- -.......+.++..++..||..|+++++-... . ..+...++
T Consensus 203 l~~~~~~~D~~Vrt~A~eglL~L~eg~kL---~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~kl~ 279 (823)
T KOG2259|consen 203 LIYLEHDQDFRVRTHAVEGLLALSEGFKL---SKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESEEEKLK 279 (823)
T ss_pred HHHHhcCCCcchHHHHHHHHHhhcccccc---cHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhhhhhhH
Confidence 4555555555556666655 444332111 11125566788889999999999887775443 2 12233444
Q ss_pred HcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcC-CccHHHHHHhCchhhhHhhhccCCCHHHHHHHHHHHHHH--h---
Q 007520 386 EEGGLDALLLLLRTSQNTTILRVASGAIANLAMN-EMNQGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANL--C--- 459 (600)
Q Consensus 386 ~~G~I~~Lv~lL~~~~~~~v~~~Al~aL~NLa~~-~~~r~~I~~~G~I~~Lv~lL~~~~~~~v~~~Aa~aL~nL--a--- 459 (600)
+. +...++..++ +-+-.++-.|+.+|..+-.. ++.-..-.+..++..+-.--..+..|. ....+- +
T Consensus 280 D~-aF~~vC~~v~-D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~ahkrpk------~l~s~GewSsGk 351 (823)
T KOG2259|consen 280 DA-AFSSVCRAVR-DRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAHKRPK------ALYSSGEWSSGK 351 (823)
T ss_pred HH-HHHHHHHHHh-cCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhcccchH------HHHhcCCcccCc
Confidence 43 5666777776 44555677777777666433 222222222211211100000001111 111111 0
Q ss_pred ---------CCchhHHHHHHcChHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchhhhhcchhhHHHHHhCCcHHHHHHh
Q 007520 460 ---------GNEKLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIAN 530 (600)
Q Consensus 460 ---------~~~e~r~~i~~~G~i~~Lv~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~q~~~~~r~~l~e~g~l~~Lv~L 530 (600)
.+++.-.-|+.+|+..+++.-+.+.-..|+.+|+..|+.|+...|... ..++..|+.+
T Consensus 352 ~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~FA-------------~~aldfLvDM 418 (823)
T KOG2259|consen 352 EWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGFA-------------VRALDFLVDM 418 (823)
T ss_pred cccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCcH-------------HHHHHHHHHH
Confidence 122334457788999999999998889999999999999997665532 2478999999
Q ss_pred hcCCCHHHHHHHHHHHHHhhcCchhHHHHHHcccHHHHHHhhhcCChHHHHHHHHHHHhcC
Q 007520 531 SKTNSASTRRHVELALCHLAQNEDNARDFISRGGAKELVQISIESSREDIRNLAKKTMKSN 591 (600)
Q Consensus 531 l~s~~~~v~~~Aa~aL~nLa~~~~~~~~lv~~G~l~~Lv~ll~~~~~~~ir~~A~~~L~~~ 591 (600)
+++....||..|..+|..++.+- .++..-++.++..+.+.+ .++|+....+|+..
T Consensus 419 fNDE~~~VRL~ai~aL~~Is~~l-----~i~eeql~~il~~L~D~s-~dvRe~l~elL~~~ 473 (823)
T KOG2259|consen 419 FNDEIEVVRLKAIFALTMISVHL-----AIREEQLRQILESLEDRS-VDVREALRELLKNA 473 (823)
T ss_pred hccHHHHHHHHHHHHHHHHHHHh-----eecHHHHHHHHHHHHhcC-HHHHHHHHHHHHhc
Confidence 99999999999999999997662 223345566666666544 46777777666554
No 109
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=96.90 E-value=0.0021 Score=45.65 Aligned_cols=39 Identities=15% Similarity=0.264 Sum_probs=35.6
Q ss_pred hhHHHHHhCCcHHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 007520 513 KGRSHLMEDSALEWLIANSKTNSASTRRHVELALCHLAQ 551 (600)
Q Consensus 513 ~~r~~l~e~g~l~~Lv~Ll~s~~~~v~~~Aa~aL~nLa~ 551 (600)
.++..+.+.|+++.|+.++.++++.++..++++|+||+.
T Consensus 3 ~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~~ 41 (41)
T smart00185 3 EQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS 41 (41)
T ss_pred HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence 367778999999999999999999999999999999973
No 110
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.88 E-value=0.94 Score=56.98 Aligned_cols=47 Identities=11% Similarity=0.125 Sum_probs=19.7
Q ss_pred HhHHHHHHHhhhHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHhhhh
Q 007520 110 TRSEFLEKENAHLELEVEKILGELNHQKDQNNLKREKIVQLEISLKN 156 (600)
Q Consensus 110 ~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (600)
.+++.+..++..+..+..++...++.-....+...++..++...+..
T Consensus 836 ~el~~l~~~~e~l~~e~e~~~~eI~~Lq~ki~el~~~klkl~~~l~~ 882 (1311)
T TIGR00606 836 HELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQR 882 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333334444444444444444433333344444444444443
No 111
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=96.84 E-value=1.5 Score=54.78 Aligned_cols=44 Identities=18% Similarity=0.252 Sum_probs=25.4
Q ss_pred hhhhhhhhhhhHHHHHHHHHHhHhHHHhhhhhHHHHHHHHHHHh
Q 007520 168 QKALADTTQLYEKKIAELNKKLEDEHACFEGAVEQLDMVKKLLS 211 (600)
Q Consensus 168 ~~~l~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~~~~~~~~~ 211 (600)
...++...+.++.++.+|.+...+|-+....=...+..+++-+.
T Consensus 738 ~~~i~~~~~~~~~~~~~le~~~~~eL~~~GvD~~~I~~l~~~i~ 781 (1201)
T PF12128_consen 738 KQEIAAAKQEAKEQLKELEQQYNQELAGKGVDPERIQQLKQEIE 781 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 34455567777777777777777765544333334444444444
No 112
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=96.84 E-value=0.075 Score=55.21 Aligned_cols=189 Identities=16% Similarity=0.169 Sum_probs=138.7
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhhC-Ccch----HHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcCCccHH
Q 007520 350 PKILQLLTSEDPDVQIHAVKVVANLAA-EDIN----QEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMNEMNQG 424 (600)
Q Consensus 350 ~~Lv~LL~s~~~~vr~~Aa~aL~nLa~-~~~~----~~~iv~~G~I~~Lv~lL~~~~~~~v~~~Al~aL~NLa~~~~~r~ 424 (600)
+.|-.-|..++..|+.-+++.++-+.. ++.| -..++.+|.++.++..+- +.|.++...|...+..++..+..-.
T Consensus 85 pdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIg-geddeVAkAAiesikrialfpaale 163 (524)
T KOG4413|consen 85 PDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIG-GEDDEVAKAAIESIKRIALFPAALE 163 (524)
T ss_pred HHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHc-CCcHHHHHHHHHHHHHHHhcHHHHH
Confidence 344445567788889889888887765 3433 234558888999999988 6788899999999999999999888
Q ss_pred HHHHhCchhhh--HhhhccCCCHHHHHHHHHHHHHHh-CCchhHHHHHHcChHHHHHHHHcC-CCHHHHHHHHHHHHHhh
Q 007520 425 LIMSRGGGQLL--AKTASKTDDPQTLRMVAGALANLC-GNEKLHTMLEEDGAIKALLAMVRS-GNIDVIAQVARGLANFA 500 (600)
Q Consensus 425 ~I~~~G~I~~L--v~lL~~~~~~~v~~~Aa~aL~nLa-~~~e~r~~i~~~G~i~~Lv~lL~s-~~~~v~~~A~~aL~nLa 500 (600)
.|.......++ .++...+ +.-++..+...+-.+. ..+........+|.+..|..-|.. .|.-|+..+......|+
T Consensus 164 aiFeSellDdlhlrnlaakc-ndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvteLa 242 (524)
T KOG4413|consen 164 AIFESELLDDLHLRNLAAKC-NDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELA 242 (524)
T ss_pred HhcccccCChHHHhHHHhhh-hhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHH
Confidence 88886666653 3443343 3356667777777664 567777777788999888888875 78889999999999998
Q ss_pred cCCchhhhhcchhhHHHHHhCCcHHHHHHhhcCC--CHHHHHHHHHHHHHh
Q 007520 501 KCESRAIVQGQRKGRSHLMEDSALEWLIANSKTN--SASTRRHVELALCHL 549 (600)
Q Consensus 501 ~~~~~~~~q~~~~~r~~l~e~g~l~~Lv~Ll~s~--~~~v~~~Aa~aL~nL 549 (600)
.. ..+|+.+.+.|.|+.+..++... +|--..++......+
T Consensus 243 et---------eHgreflaQeglIdlicnIIsGadsdPfekfralmgfgkf 284 (524)
T KOG4413|consen 243 ET---------EHGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKF 284 (524)
T ss_pred HH---------hhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHH
Confidence 55 57899999999999999987543 444444444444333
No 113
>PHA02562 46 endonuclease subunit; Provisional
Probab=96.80 E-value=0.87 Score=51.72 Aligned_cols=36 Identities=19% Similarity=0.203 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHhh
Q 007520 237 HESAVYEVQTLKSEYKNLLEEKETMSDELQAARQRL 272 (600)
Q Consensus 237 ~e~~~~el~~l~~~~~~l~~~~~~~~~el~~~~~~l 272 (600)
..++..+...++..+..+........++|..+...+
T Consensus 353 i~~~~~~~~~l~~ei~~l~~~~~~~~~~l~~l~~~l 388 (562)
T PHA02562 353 LITLVDKAKKVKAAIEELQAEFVDNAEELAKLQDEL 388 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHH
Confidence 333333333344333333333334444444444433
No 114
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=96.79 E-value=0.0028 Score=48.60 Aligned_cols=55 Identities=24% Similarity=0.195 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHhCCchhHHHHHHcChHHHHHHHHcCCCHHHHHHHHHHHHHh
Q 007520 445 PQTLRMVAGALANLCGNEKLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANF 499 (600)
Q Consensus 445 ~~v~~~Aa~aL~nLa~~~e~r~~i~~~G~i~~Lv~lL~s~~~~v~~~A~~aL~nL 499 (600)
|.++..|+++|++++........-.-..+++.|+.+|.++++.|+..|+++|++|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 5688999999999886544433335567899999999999999999999999875
No 115
>PRK04863 mukB cell division protein MukB; Provisional
Probab=96.75 E-value=0.68 Score=58.29 Aligned_cols=105 Identities=11% Similarity=0.137 Sum_probs=62.7
Q ss_pred HHHHHHhhhHHHHHHHHHhHHHHHHHhhhHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHhhhhhhhhh-hhhhHHhhhh
Q 007520 93 QLRESQISYDESMRNLVTRSEFLEKENAHLELEVEKILGELNHQKDQNNLKREKIVQLEISLKNSKQYE-MENSTYQKAL 171 (600)
Q Consensus 93 ~~~~~~~~~~~~~~~l~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~n~~~~~~l 171 (600)
+|.....+|.+.+..+..++..++.+...+..+++.+....+.-....+........ ..-.+ ..-...++.+
T Consensus 439 eLe~~LenF~aklee~e~qL~elE~kL~~lea~leql~~~~~~l~~~~Gkv~~~~a~-------~~~~~~~~~~~~~~~~ 511 (1486)
T PRK04863 439 NAEDWLEEFQAKEQEATEELLSLEQKLSVAQAAHSQFEQAYQLVRKIAGEVSRSEAW-------DVARELLRRLREQRHL 511 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHH-------HHHHHHHHHhHHHHHH
Confidence 455555667777777777776666666666666666655554333222222211110 00001 2334567889
Q ss_pred hhhhhhhHHHHHHHHHHhHhHHHhhhhhHHHHHHHHHHHhhhhh
Q 007520 172 ADTTQLYEKKIAELNKKLEDEHACFEGAVEQLDMVKKLLSDYQN 215 (600)
Q Consensus 172 ~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~~~~~~~~~~~q~ 215 (600)
++..++...++.+|..-++..+. .+|++.++.+
T Consensus 512 ~~~~~~~~~~~~~l~~~~~~q~~-----------~~~~~~~~~~ 544 (1486)
T PRK04863 512 AEQLQQLRMRLSELEQRLRQQQR-----------AERLLAEFCK 544 (1486)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHH
Confidence 99999999999999998886643 4566665544
No 116
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.74 E-value=1.6 Score=49.81 Aligned_cols=144 Identities=22% Similarity=0.202 Sum_probs=91.3
Q ss_pred HHHHHHHHHhHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhchhHHHHH---HHHHH
Q 007520 21 KLETQVDHLTAEIERKQKLRENDKCELEKLLRECQISYDEAKDNLVTQVELLTAKIEMQQKLRENDKYEFEK---QLRES 97 (600)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 97 (600)
|-|.++.+.+...+|--++--..++.+-..+..-+.+....+..|..+++...-+.+.-.+.-+--..++++ |+-..
T Consensus 80 r~el~~~k~~~i~~r~~~~~~dr~~~~~~~l~~~q~a~~~~e~~lq~q~e~~~n~~q~~~~k~~el~~e~~~k~ae~~~l 159 (716)
T KOG4593|consen 80 RAELELTKAQSILARNYEAEVDRKHKLLTRLRQLQEALKGQEEKLQEQLERNRNQCQANLKKELELLREKEDKLAELGTL 159 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444443333333444445666666666666666555555544433333333333344444 44456
Q ss_pred HhhhHHHHHHHHHhHHHHHHHhhhHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHhhhhhhhhhhhh
Q 007520 98 QISYDESMRNLVTRSEFLEKENAHLELEVEKILGELNHQKDQNNLKREKIVQLEISLKNSKQYEMEN 164 (600)
Q Consensus 98 ~~~~~~~~~~l~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n 164 (600)
++.|++++..+..+..-.+..-+++..++..++++++.|.......-.++....-++.+-+++..-|
T Consensus 160 r~k~dss~s~~q~e~~~~~~~~~~~~s~l~~~eke~~~~~~ql~~~~q~~~~~~~~l~e~~~~~qq~ 226 (716)
T KOG4593|consen 160 RNKLDSSLSELQWEVMLQEMRAKRLHSELQNEEKELDRQHKQLQEENQKIQELQASLEERADHEQQN 226 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7899999999999999999999999999999999998887777776666666666665555555433
No 117
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=96.70 E-value=0.02 Score=56.07 Aligned_cols=119 Identities=18% Similarity=0.151 Sum_probs=88.7
Q ss_pred HHHHHHHHHHHHHHhCCchhHHHHHHc----------------ChHHHHHHHHcC------CCHHHHHHHHHHHHHhhcC
Q 007520 445 PQTLRMVAGALANLCGNEKLHTMLEED----------------GAIKALLAMVRS------GNIDVIAQVARGLANFAKC 502 (600)
Q Consensus 445 ~~v~~~Aa~aL~nLa~~~e~r~~i~~~----------------G~i~~Lv~lL~s------~~~~v~~~A~~aL~nLa~~ 502 (600)
......++.+|+||+..+.++..+.+. ..+..|+.++-. ...+-....+.+|+|++..
T Consensus 9 ~~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS~~ 88 (192)
T PF04063_consen 9 SPLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLSQL 88 (192)
T ss_pred cchHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhcCC
Confidence 356677889999999988888766542 245667776633 2234467799999999976
Q ss_pred CchhhhhcchhhHHHHHhC--Cc--HHHHHHhhcCCCHHHHHHHHHHHHHhhcCchhHHHHHHcccHHHHHHhh
Q 007520 503 ESRAIVQGQRKGRSHLMED--SA--LEWLIANSKTNSASTRRHVELALCHLAQNEDNARDFISRGGAKELVQIS 572 (600)
Q Consensus 503 ~~~~~~q~~~~~r~~l~e~--g~--l~~Lv~Ll~s~~~~v~~~Aa~aL~nLa~~~~~~~~lv~~G~l~~Lv~ll 572 (600)
+.+|..|.+. +. +..|+.++.+.+.--|..++.+|.|+|.+.+....+.....+..|-.++
T Consensus 89 ---------~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~~~H~~LL~~~~~~iLp~LL 153 (192)
T PF04063_consen 89 ---------PEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDTDSHEWLLSDDEVDILPYLL 153 (192)
T ss_pred ---------HHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccHhHHHHhcCchhhhhHHHHH
Confidence 7899999873 44 7788888888877778889999999999999999998754344444444
No 118
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=96.66 E-value=1.7 Score=49.22 Aligned_cols=71 Identities=23% Similarity=0.254 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHhhhHHHHhhhhHHHHHHHHhccC
Q 007520 223 VHELCVKLKETRQLHESAVYEVQTLKSEYKNLLEEKETMSDELQAARQRLLVEEKQRKAIEYELVKLKKTA 293 (600)
Q Consensus 223 ~~~l~~~~~d~~~~~e~~~~el~~l~~~~~~l~~~~~~~~~el~~~~~~l~~e~~~~~~le~~~~~l~~~l 293 (600)
+..+...+.++...+.....|+..+...+.-|+........++..++.+...-......++.++...+..+
T Consensus 283 l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eL 353 (522)
T PF05701_consen 283 LASAKKELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSEL 353 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHH
Confidence 45566666666666666666666666666666666666677777766666555555555555555555443
No 119
>PRK03918 chromosome segregation protein; Provisional
Probab=96.66 E-value=2 Score=51.60 Aligned_cols=7 Identities=0% Similarity=0.558 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 007520 22 LETQVDH 28 (600)
Q Consensus 22 ~~~~~~~ 28 (600)
++.+++.
T Consensus 174 ~~~~~~~ 180 (880)
T PRK03918 174 IKRRIER 180 (880)
T ss_pred HHHHHHH
Confidence 3333333
No 120
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=96.64 E-value=0.56 Score=47.47 Aligned_cols=182 Identities=23% Similarity=0.252 Sum_probs=90.8
Q ss_pred hHHHhHHHHHHHHHHh------HHHHHHHHhhhccHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhchhH
Q 007520 15 YESLCRKLETQVDHLT------AEIERKQKLRENDKCELEKLLRECQISYDEAKDNLVTQVELLTAKIEMQQKLRENDKY 88 (600)
Q Consensus 15 ~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (600)
|..+..+|+...+.+. ....|.....|.+-+-.+.++.++...+.++++.+. +.++---.|+........-+.
T Consensus 17 ~~~~~~~l~~~~~~~~~aE~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e~~~d-e~er~~k~lE~r~~~~eeri~ 95 (237)
T PF00261_consen 17 LEEAEEKLKEAEKRAEKAEAEVASLQRRIQLLEEELERAEERLEEATEKLEEAEKRAD-ESERARKVLENREQSDEERIE 95 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHH-HHCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhHHHHHHHHHH
Confidence 4444455444444442 445566666675555555556666666666666554 445444455555555555555
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHhHHHHHHHhhhHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHhhhhhhhhhhhhhHHh
Q 007520 89 EFEKQLRESQISYDESMRNLVTRSEFLEKENAHLELEVEKILGELNHQKDQNNLKREKIVQLEISLKNSKQYEMENSTYQ 168 (600)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~ 168 (600)
.+|.++........ ....+|+....-...++.++.+....+ ...-.++..||..|+...+.-..-....
T Consensus 96 ~lE~~l~ea~~~~e----e~e~k~~E~~rkl~~~E~~Le~aEeR~-------e~~E~ki~eLE~el~~~~~~lk~lE~~~ 164 (237)
T PF00261_consen 96 ELEQQLKEAKRRAE----EAERKYEEVERKLKVLEQELERAEERA-------EAAESKIKELEEELKSVGNNLKSLEASE 164 (237)
T ss_dssp HCHHHHHHHHHHHH----HHHHHHHHCHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH-------hhhchhHHHHHHHHHHHHHHHHHhhhhh
Confidence 55555554433222 222233333333333333333322221 1222333444444433322111111111
Q ss_pred hhhhhhhhhhHHHHHHHHHHhHhHHHhhhhhHHHHHHHHH
Q 007520 169 KALADTTQLYEKKIAELNKKLEDEHACFEGAVEQLDMVKK 208 (600)
Q Consensus 169 ~~l~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~~~~~~ 208 (600)
.........|+++|..|+..|..--.|...|+..+..|.+
T Consensus 165 ~~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~ 204 (237)
T PF00261_consen 165 EKASEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEK 204 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2223355778899999998888777888888877777433
No 121
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=96.63 E-value=3 Score=52.75 Aligned_cols=178 Identities=24% Similarity=0.239 Sum_probs=105.0
Q ss_pred HHHhHHHHHHHHHHhHHHHHHHHhhhccHHHHHH----------HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhc
Q 007520 16 ESLCRKLETQVDHLTAEIERKQKLRENDKCELEK----------LLRECQISYDEAKDNLVTQVELLTAKIEMQQKLREN 85 (600)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (600)
.+..++++.+|+.|+.|++=-.-.+++=+.|+++ .+...|....+.+..+. ..+-+++.++..-.+
T Consensus 737 ~~k~~~le~ev~~LKqE~~ll~~t~~rL~~e~~~l~~e~~~L~~~l~~lQt~~~~~e~s~~----~~k~~~e~~i~eL~~ 812 (1822)
T KOG4674|consen 737 NEKLEKLEAELSNLKQEKLLLKETEERLSQELEKLSAEQESLQLLLDNLQTQKNELEESEM----ATKDKCESRIKELER 812 (1822)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 3556788888888877765433333322233332 33444444444444332 344556666666666
Q ss_pred hhHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHhhhHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHhhhhhhhhh--hh
Q 007520 86 DKYEFEKQLRESQISYDESMRNLVTRSEFLEKENAHLELEVEKILGELNHQKDQNNLKREKIVQLEISLKNSKQYE--ME 163 (600)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 163 (600)
+..++-+.+-++..++.+....+..++++..+-.-.+..++..++..+-........+..+..+|+-.|+..+... +.
T Consensus 813 el~~lk~klq~~~~~~r~l~~~~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~le~k~~eL~k~l~~~~~~~~~l~ 892 (1822)
T KOG4674|consen 813 ELQKLKKKLQEKSSDLRELTNSLEKQLENAQNLVDELESELKSLLTSLDSVSTNIAKLEIKLSELEKRLKSAKTQLLNLD 892 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhcc
Confidence 6666666666666666666666666666655555555555566555555555555566677777777777766655 33
Q ss_pred h---hHHhhhhhhhhhhhHHHHHHHHHHhHhHHHhhh
Q 007520 164 N---STYQKALADTTQLYEKKIAELNKKLEDEHACFE 197 (600)
Q Consensus 164 n---~~~~~~l~~~~~~~~~~~~~l~~~l~~e~~~~~ 197 (600)
+ ..-...+.|+...-.+++.+|+..|.+......
T Consensus 893 ~~~~~~d~~~~~~~Lr~~~eq~~~l~~~L~~a~s~i~ 929 (1822)
T KOG4674|consen 893 SKSSNEDATILEDTLRKELEEITDLKEELTDALSQIR 929 (1822)
T ss_pred ccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 233445566666777777777777776655443
No 122
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=96.62 E-value=0.008 Score=52.55 Aligned_cols=65 Identities=14% Similarity=0.239 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHhhcCCchhhhhcchhhHHHHHhCCcHHHHHHhhc--CCCHHHHHHHHHHHHHhhcCchhHHHHH
Q 007520 488 VIAQVARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSK--TNSASTRRHVELALCHLAQNEDNARDFI 560 (600)
Q Consensus 488 v~~~A~~aL~nLa~~~~~~~~q~~~~~r~~l~e~g~l~~Lv~Ll~--s~~~~v~~~Aa~aL~nLa~~~~~~~~lv 560 (600)
.+...+++|+||+..+ +..+..+.+.||+|.++..+. ..+|-++++|.++++||+.+....+.++
T Consensus 2 ~K~~lvrlianl~~~~--------~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I 68 (102)
T PF09759_consen 2 FKRDLVRLIANLCYKN--------KEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFI 68 (102)
T ss_pred cHHHHHHHHHHHHhCC--------HHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 3567889999999765 567888999999999999754 4579999999999999987655444444
No 123
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=96.62 E-value=0.059 Score=60.14 Aligned_cols=217 Identities=13% Similarity=0.101 Sum_probs=134.7
Q ss_pred hcCCHHHHHHhh---CCCCHHHHHHHHHHHHHhhC-CcchHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcCC
Q 007520 345 DEVGLPKILQLL---TSEDPDVQIHAVKVVANLAA-EDINQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMNE 420 (600)
Q Consensus 345 e~GgV~~Lv~LL---~s~~~~vr~~Aa~aL~nLa~-~~~~~~~iv~~G~I~~Lv~lL~~~~~~~v~~~Al~aL~NLa~~~ 420 (600)
+.+-++.+..+| .+....+|..|..+...+.. .+....+ . .+|+++.-+... .=.....++..|..++...
T Consensus 211 EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK---~-llpsll~~l~~~-kWrtK~aslellg~m~~~a 285 (569)
T KOG1242|consen 211 EPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAVK---L-LLPSLLGSLLEA-KWRTKMASLELLGAMADCA 285 (569)
T ss_pred CchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchhh---H-hhhhhHHHHHHH-hhhhHHHHHHHHHHHHHhc
Confidence 444444444444 46678889888877776554 2322211 1 234444333312 2234667888888888887
Q ss_pred ccHHHHHHhCchhhhHhhhccCCCHHHHHHHHHHHHHHhC---CchhHHHHHHcChHHHHHHHHcCCCHHHHHHHHHHHH
Q 007520 421 MNQGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLCG---NEKLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLA 497 (600)
Q Consensus 421 ~~r~~I~~~G~I~~Lv~lL~~~~~~~v~~~Aa~aL~nLa~---~~e~r~~i~~~G~i~~Lv~lL~s~~~~v~~~A~~aL~ 497 (600)
+-+-...-...||.+.+.|-+ .++.++..+..+|..++. ++++.. .+|.|+..+.++...+. .++..|.
T Consensus 286 p~qLs~~lp~iiP~lsevl~D-T~~evr~a~~~~l~~~~svidN~dI~~------~ip~Lld~l~dp~~~~~-e~~~~L~ 357 (569)
T KOG1242|consen 286 PKQLSLCLPDLIPVLSEVLWD-TKPEVRKAGIETLLKFGSVIDNPDIQK------IIPTLLDALADPSCYTP-ECLDSLG 357 (569)
T ss_pred hHHHHHHHhHhhHHHHHHHcc-CCHHHHHHHHHHHHHHHHhhccHHHHH------HHHHHHHHhcCcccchH-HHHHhhc
Confidence 777777778899999999965 788999999999999874 344333 67888888876653322 2223332
Q ss_pred HhhcCCchhhhhcchhhHHHHHhCCcHHHHHH----hhcCCCHHHHHHHHHHHHHhhcCchhHHHHH--HcccHHHHHHh
Q 007520 498 NFAKCESRAIVQGQRKGRSHLMEDSALEWLIA----NSKTNSASTRRHVELALCHLAQNEDNARDFI--SRGGAKELVQI 571 (600)
Q Consensus 498 nLa~~~~~~~~q~~~~~r~~l~e~g~l~~Lv~----Ll~s~~~~v~~~Aa~aL~nLa~~~~~~~~lv--~~G~l~~Lv~l 571 (600)
.-++-. .++.-.+..++. -++..+..+++.++.++.|||.--+....+. -...+|.|-..
T Consensus 358 ~ttFV~--------------~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk~~ 423 (569)
T KOG1242|consen 358 ATTFVA--------------EVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKEN 423 (569)
T ss_pred ceeeee--------------eecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHHH
Confidence 222110 112233334444 4555678899999999999987543333333 23367777777
Q ss_pred hhcCChHHHHHHHHHHHh
Q 007520 572 SIESSREDIRNLAKKTMK 589 (600)
Q Consensus 572 l~~~~~~~ir~~A~~~L~ 589 (600)
+... .|++|..|.++|.
T Consensus 424 ~~d~-~PEvR~vaarAL~ 440 (569)
T KOG1242|consen 424 LDDA-VPEVRAVAARALG 440 (569)
T ss_pred hcCC-ChhHHHHHHHHHH
Confidence 7766 6788988888773
No 124
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=96.60 E-value=0.026 Score=56.26 Aligned_cols=174 Identities=14% Similarity=0.067 Sum_probs=101.8
Q ss_pred CCCHHHHHHHHHHHHHhhcCC---ccHHHHHH--hCchhhhHhhhccCCCHHHHHHHHHHHHHHhCCchhHHHHHHcChH
Q 007520 400 SQNTTILRVASGAIANLAMNE---MNQGLIMS--RGGGQLLAKTASKTDDPQTLRMVAGALANLCGNEKLHTMLEEDGAI 474 (600)
Q Consensus 400 ~~~~~v~~~Al~aL~NLa~~~---~~r~~I~~--~G~I~~Lv~lL~~~~~~~v~~~Aa~aL~nLa~~~e~r~~i~~~G~i 474 (600)
+.+=..+..++.-|..+.... .....+.. ...+..+...+.+ ..+.+...|+.++..|+..-...-.-.-...+
T Consensus 18 ~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d-~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l 96 (228)
T PF12348_consen 18 ESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSD-LRSKVSKTACQLLSDLARQLGSHFEPYADILL 96 (228)
T ss_dssp -SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-H-H---HHHHHHHHHHHHHHHHGGGGHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhh-hHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHH
Confidence 445556667777777776543 34444443 2344566666643 45578889999999887432111111234577
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhhcCCchhhhhcchhhHHHHHhCCc-HHHHHHhhcCCCHHHHHHHHHHHHHhhcCc
Q 007520 475 KALLAMVRSGNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLMEDSA-LEWLIANSKTNSASTRRHVELALCHLAQNE 553 (600)
Q Consensus 475 ~~Lv~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~q~~~~~r~~l~e~g~-l~~Lv~Ll~s~~~~v~~~Aa~aL~nLa~~~ 553 (600)
|.|+..+.++...++..|..+|..++...+- .... ++.+...+.+.++.+|..++..+..+....
T Consensus 97 ~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~--------------~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~ 162 (228)
T PF12348_consen 97 PPLLKKLGDSKKFIREAANNALDAIIESCSY--------------SPKILLEILSQGLKSKNPQVREECAEWLAIILEKW 162 (228)
T ss_dssp HHHHHGGG---HHHHHHHHHHHHHHHTTS-H----------------HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHccccHHHHHHHHHHHHHHHHHCCc--------------HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHc
Confidence 8898888888889999999999999865320 1123 566777889999999999999998886533
Q ss_pred h-hHHHHHH----cccHHHHHHhhhcCChHHHHHHHHHHHh
Q 007520 554 D-NARDFIS----RGGAKELVQISIESSREDIRNLAKKTMK 589 (600)
Q Consensus 554 ~-~~~~lv~----~G~l~~Lv~ll~~~~~~~ir~~A~~~L~ 589 (600)
. ....+-. ...++.+..++.+++ +++|+.|..++.
T Consensus 163 ~~~~~~l~~~~~~~~l~~~l~~~l~D~~-~~VR~~Ar~~~~ 202 (228)
T PF12348_consen 163 GSDSSVLQKSAFLKQLVKALVKLLSDAD-PEVREAARECLW 202 (228)
T ss_dssp ----GGG--HHHHHHHHHHHHHHHTSS--HHHHHHHHHHHH
T ss_pred cchHhhhcccchHHHHHHHHHHHCCCCC-HHHHHHHHHHHH
Confidence 3 1122211 336677778887765 679999886663
No 125
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=96.60 E-value=0.00053 Score=81.50 Aligned_cols=138 Identities=19% Similarity=0.260 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHhhhHHHHHHHHHhhhhhhhhhhhh
Q 007520 63 DNLVTQVELLTAKIEMQQKLRENDKYEFEKQLRESQISYDESMRNLVTRSEFLEKENAHLELEVEKILGELNHQKDQNNL 142 (600)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 142 (600)
+..-.|+..|+-.|+......+.-...+-+--...-.+..+.+.++...-..++|++..|..|+.+|...+..-......
T Consensus 98 kkrE~El~~Lrr~LEe~~~~~e~~~~~lrkkh~~~~~eL~eqle~lqk~k~~lEK~k~~l~~e~~dL~~~l~~~~k~k~~ 177 (859)
T PF01576_consen 98 KKREAELAKLRRDLEEANLQHEATLAELRKKHQDAVAELNEQLEQLQKQKAKLEKEKSQLEAELDDLQAQLDSLQKAKQE 177 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 33344666666666655544433333333322222233334444444444466677777778888887777444443333
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhhHHhhhhhhhhhhhHHHHHHHHHHhHhHHHhhhhhH
Q 007520 143 KREKIVQLEISLKNSKQYEMENSTYQKALADTTQLYEKKIAELNKKLEDEHACFEGAV 200 (600)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~l~~~l~~e~~~~~~~~ 200 (600)
.-.++.++|..|...+-.-.+.-....-+.....-+..++.+|+..|++.-.....+.
T Consensus 178 ~Ek~~K~lE~qL~El~~klee~er~~~el~~~k~kL~~E~~eL~~qLee~e~~~~~l~ 235 (859)
T PF01576_consen 178 AEKKRKQLEAQLNELQAKLEESERQRNELTEQKAKLQSENSELTRQLEEAESQLSQLQ 235 (859)
T ss_dssp ----------------------------------------------------------
T ss_pred HHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455777888888887777777777788888888888888888888887766554443
No 126
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=96.59 E-value=0.023 Score=58.76 Aligned_cols=188 Identities=14% Similarity=0.034 Sum_probs=122.2
Q ss_pred hhCCCCHHHHHHHHHHHHHhhCCcchHHHHH-HcCCHHHHHHHHccC-CCHHHHHHHHHHHHHhhcCCccHHHHHH-hCc
Q 007520 355 LLTSEDPDVQIHAVKVVANLAAEDINQEKIV-EEGGLDALLLLLRTS-QNTTILRVASGAIANLAMNEMNQGLIMS-RGG 431 (600)
Q Consensus 355 LL~s~~~~vr~~Aa~aL~nLa~~~~~~~~iv-~~G~I~~Lv~lL~~~-~~~~v~~~Al~aL~NLa~~~~~r~~I~~-~G~ 431 (600)
++.+-++-.+-.|+.+|.++...++.|..+- +.-+-..++.+++++ .+.+++.+.+.++|-|+.++.+...|-. .+-
T Consensus 157 l~Q~i~~lTrlfav~cl~~l~~~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~~~aqdi~K~~dl 236 (432)
T COG5231 157 LSQLIDFLTRLFAVSCLSNLEFDVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSKECAQDIDKMDDL 236 (432)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 3344456678889999999999888876665 344566788888754 3467899999999999999877755444 455
Q ss_pred hhhhHhhhccCCCHHHHHHHHHHHHHHhC-Cc-hhHHHHHHcC-hHH---------------------------------
Q 007520 432 GQLLAKTASKTDDPQTLRMVAGALANLCG-NE-KLHTMLEEDG-AIK--------------------------------- 475 (600)
Q Consensus 432 I~~Lv~lL~~~~~~~v~~~Aa~aL~nLa~-~~-e~r~~i~~~G-~i~--------------------------------- 475 (600)
|..|+.+........+.+-+++.+.|++. .| .....+.-.| +.+
T Consensus 237 i~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k~l 316 (432)
T COG5231 237 INDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTKKL 316 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhhhh
Confidence 66777777554455788888888888874 21 1111111111 111
Q ss_pred -------------------------------------------HHHHHHcCCCHHH-HHHHHHHHHHhhcCCchhhhhcc
Q 007520 476 -------------------------------------------ALLAMVRSGNIDV-IAQVARGLANFAKCESRAIVQGQ 511 (600)
Q Consensus 476 -------------------------------------------~Lv~lL~s~~~~v-~~~A~~aL~nLa~~~~~~~~q~~ 511 (600)
.|..+++..++.+ ..-||.-+..+.. ..
T Consensus 317 ~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr--------~~ 388 (432)
T COG5231 317 CIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVR--------AS 388 (432)
T ss_pred hHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHH--------hC
Confidence 1222222111110 1112222222222 23
Q ss_pred hhhHHHHHhCCcHHHHHHhhcCCCHHHHHHHHHHHHHhh
Q 007520 512 RKGRSHLMEDSALEWLIANSKTNSASTRRHVELALCHLA 550 (600)
Q Consensus 512 ~~~r~~l~e~g~l~~Lv~Ll~s~~~~v~~~Aa~aL~nLa 550 (600)
|+++..+...|+-+.++.+++++|+.|+..|..|+..+-
T Consensus 389 PE~~~vl~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i 427 (432)
T COG5231 389 PEINAVLSKYGVKEIIMNLINHDDDDVKFEALQALQTCI 427 (432)
T ss_pred chHHHHHHHhhhHHHHHHHhcCCCchhhHHHHHHHHHHH
Confidence 778889999999999999999999999999999987763
No 127
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.53 E-value=0.024 Score=63.48 Aligned_cols=180 Identities=13% Similarity=0.079 Sum_probs=124.5
Q ss_pred cCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcCC-c-cHHHHHH---hCchhhhHhhhccCCCHHHHHHHHHHHHHHhCC
Q 007520 387 EGGLDALLLLLRTSQNTTILRVASGAIANLAMNE-M-NQGLIMS---RGGGQLLAKTASKTDDPQTLRMVAGALANLCGN 461 (600)
Q Consensus 387 ~G~I~~Lv~lL~~~~~~~v~~~Al~aL~NLa~~~-~-~r~~I~~---~G~I~~Lv~lL~~~~~~~v~~~Aa~aL~nLa~~ 461 (600)
..++|.|+.+|. +++....+-|.+||..+|.+. . ....... .-.+|.++...+ +++|.++..|+.++-...-.
T Consensus 127 pelLp~L~~~L~-s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~-h~spkiRs~A~~cvNq~i~~ 204 (885)
T KOG2023|consen 127 PELLPQLCELLD-SPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFK-HPSPKIRSHAVGCVNQFIII 204 (885)
T ss_pred hhHHHHHHHHhc-CCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHh-CCChhHHHHHHhhhhheeec
Confidence 346899999998 667678889999999999762 1 1111111 124677888875 47899999999988766433
Q ss_pred chhHHHHHHcChHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchhhhhcchhhHHHHHhCCcHHHHHHhhcCCCHHHHHH
Q 007520 462 EKLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSKTNSASTRRH 541 (600)
Q Consensus 462 ~e~r~~i~~~G~i~~Lv~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~q~~~~~r~~l~e~g~l~~Lv~Ll~s~~~~v~~~ 541 (600)
..-.-...-...+..++.+..+.++.||.++|.+|..|..-.++... =--.+.++-++...++.|+.|.-.
T Consensus 205 ~~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~---------phl~~IveyML~~tqd~dE~VALE 275 (885)
T KOG2023|consen 205 QTQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLV---------PHLDNIVEYMLQRTQDVDENVALE 275 (885)
T ss_pred CcHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcc---------cchHHHHHHHHHHccCcchhHHHH
Confidence 22111122235667777777899999999999999999854332111 011467788888888899999999
Q ss_pred HHHHHHHhhcCchhHHHHHH--cccHHHHHHhhhcCCh
Q 007520 542 VELALCHLAQNEDNARDFIS--RGGAKELVQISIESSR 577 (600)
Q Consensus 542 Aa~aL~nLa~~~~~~~~lv~--~G~l~~Lv~ll~~~~~ 577 (600)
||.....+|..+-.+..+.. ...+|.|++-+..++.
T Consensus 276 ACEFwla~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~ 313 (885)
T KOG2023|consen 276 ACEFWLALAEQPICKEVLQPYLDKLIPVLLSGMVYSDD 313 (885)
T ss_pred HHHHHHHHhcCcCcHHHHHHHHHHHHHHHHccCccccc
Confidence 99999999998844444432 3577888777665543
No 128
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=96.48 E-value=0.024 Score=55.42 Aligned_cols=102 Identities=15% Similarity=0.082 Sum_probs=78.2
Q ss_pred CHHHHHHHHHHHHHhhcCCccHHHHHHh----------------CchhhhHhhhcc-----CCCHHHHHHHHHHHHHHhC
Q 007520 402 NTTILRVASGAIANLAMNEMNQGLIMSR----------------GGGQLLAKTASK-----TDDPQTLRMVAGALANLCG 460 (600)
Q Consensus 402 ~~~v~~~Al~aL~NLa~~~~~r~~I~~~----------------G~I~~Lv~lL~~-----~~~~~v~~~Aa~aL~nLa~ 460 (600)
.......++++|+||+..+..+..++.. ..+..|+..+.. .+...-....+.++.|++.
T Consensus 8 ~~~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS~ 87 (192)
T PF04063_consen 8 KSPLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLSQ 87 (192)
T ss_pred CcchHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhcC
Confidence 3446677999999999998887766652 246667777655 2334567788899999999
Q ss_pred CchhHHHHHHc--Ch--HHHHHHHHcCCCHHHHHHHHHHHHHhhcCC
Q 007520 461 NEKLHTMLEED--GA--IKALLAMVRSGNIDVIAQVARGLANFAKCE 503 (600)
Q Consensus 461 ~~e~r~~i~~~--G~--i~~Lv~lL~s~~~~v~~~A~~aL~nLa~~~ 503 (600)
.+++|..|.+. +. +..|+.++.+.+.--+..++++|.|+|++.
T Consensus 88 ~~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~ 134 (192)
T PF04063_consen 88 LPEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDT 134 (192)
T ss_pred CHHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccH
Confidence 99999999864 34 667777777777777788999999999874
No 129
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.44 E-value=2 Score=47.49 Aligned_cols=87 Identities=22% Similarity=0.244 Sum_probs=62.1
Q ss_pred cHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH---HHHHHHHHhhhchhHHHH----HHHHHHHhhhHHHHHHHHHhHHHH
Q 007520 43 DKCELEKLLRECQISYDEAKDNLVTQVELLT---AKIEMQQKLRENDKYEFE----KQLRESQISYDESMRNLVTRSEFL 115 (600)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~~~~~ 115 (600)
+|..|++++.|-+..+.-+. ||++.++ .+++.+.+.+..|-.+-| .|-+--...|-..|-.|++.++-+
T Consensus 44 eK~~Lkqq~eEleaeyd~~R----~Eldqtkeal~q~~s~hkk~~~~g~e~EesLLqESaakE~~yl~kI~eleneLKq~ 119 (772)
T KOG0999|consen 44 EKEDLKQQLEELEAEYDLAR----TELDQTKEALGQYRSQHKKVARDGEEREESLLQESAAKEEYYLQKILELENELKQL 119 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 55666666666666555444 4777776 478888888876654433 333444557888999999999999
Q ss_pred HHHhhhHHHHHHHHHhhh
Q 007520 116 EKENAHLELEVEKILGEL 133 (600)
Q Consensus 116 ~~e~~~~~~~~~~~~~~~ 133 (600)
+.+.++...|.+||.+.-
T Consensus 120 r~el~~~q~E~erl~~~~ 137 (772)
T KOG0999|consen 120 RQELTNVQEENERLEKVH 137 (772)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999999887763
No 130
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=96.44 E-value=3.2 Score=51.82 Aligned_cols=70 Identities=23% Similarity=0.387 Sum_probs=39.9
Q ss_pred HHHHHHHHhhhhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHhh
Q 007520 203 LDMVKKLLSDYQNSNQGQKEVHELCVKLKETRQLHESAVYEVQTLKSEYKNLLEEKETMSDELQAARQRL 272 (600)
Q Consensus 203 ~~~~~~~~~~~q~~~~~~~e~~~l~~~~~d~~~~~e~~~~el~~l~~~~~~l~~~~~~~~~el~~~~~~l 272 (600)
+..++..+...+.......++..+...+..+..........+..+......+++.......++...+..+
T Consensus 451 l~~l~~~~~~~~~~~e~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~ 520 (1201)
T PF12128_consen 451 LAELKQQLKNPQYTEEEKEQLEQADKRLEQAQEQQNQAQQAVEELQAEEQELRKERDQAEEELRQARREL 520 (1201)
T ss_pred HHHHHHHHhCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444556677777777776666666655566555555666565566655554444
No 131
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.40 E-value=3.1 Score=49.23 Aligned_cols=167 Identities=14% Similarity=0.120 Sum_probs=85.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHhhhHHHHhhhhHHHHHHHHhccCCCCCCccc
Q 007520 222 EVHELCVKLKETRQLHESAVYEVQTLKSEYKNLLEEKETMSDELQAARQRLLVEEKQRKAIEYELVKLKKTAPEHDDDFE 301 (600)
Q Consensus 222 e~~~l~~~~~d~~~~~e~~~~el~~l~~~~~~l~~~~~~~~~el~~~~~~l~~e~~~~~~le~~~~~l~~~l~~l~~~~~ 301 (600)
+-..|+.++.++...+.....+++..+-.+.-+.++......++......-.........++.+++.+...+..+..+..
T Consensus 393 ~e~~l~~ql~~aK~~~~~~~t~~k~a~~k~e~~~~elk~~e~e~~t~~~~~~~~~~~ld~~q~eve~l~~~l~~l~~~~~ 472 (1174)
T KOG0933|consen 393 EEKTLEDQLRDAKITLSEASTEIKQAKLKLEHLRKELKLREGELATASAEYVKDIEELDALQNEVEKLKKRLQSLGYKIG 472 (1174)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 34667777888877777777776666666655666666665555554433333334444555555555555544443333
Q ss_pred cccccccCchHHHhcccCCCCcc-----ccchHHHH------hhcCch--hHHHHHhcCCHHHHHHhhCC-CCHHHHHHH
Q 007520 302 DKKPYTKDYISKGSSRFGAPMSL-----QKSNPSRE------LSGQRA--TIAKICDEVGLPKILQLLTS-EDPDVQIHA 367 (600)
Q Consensus 302 ~~~~~~~g~i~~Lv~~L~s~~~~-----~r~~a~~~------L~~~~~--~~~~i~e~GgV~~Lv~LL~s-~~~~vr~~A 367 (600)
.+..|-...+..... -...++.+ +...++ +...-.-.|.|..|+.+-.. ....+...|
T Consensus 473 --------~~e~l~q~~~~l~~~~~~lk~~~~~l~a~~~~~~f~Y~dP~~nfdrs~V~G~Va~Li~vkd~~~~tAle~~a 544 (1174)
T KOG0933|consen 473 --------QEEALKQRRAKLHEDIGRLKDELDRLLARLANYEFTYQDPEPNFDRSKVKGLVAKLIKVKDRSYATALETTA 544 (1174)
T ss_pred --------hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCccchHHHHHHHHHHHheeCcchHHHHHHHHh
Confidence 333222211110000 00001111 222222 22222223556666655542 234556667
Q ss_pred HHHHHHhhC-CcchHHHHHHcCCHHHHHHH
Q 007520 368 VKVVANLAA-EDINQEKIVEEGGLDALLLL 396 (600)
Q Consensus 368 a~aL~nLa~-~~~~~~~iv~~G~I~~Lv~l 396 (600)
.+-|+|+.. .+.....+.+.|.+..=+.+
T Consensus 545 GgrLynvVv~te~tgkqLLq~g~l~rRvTi 574 (1174)
T KOG0933|consen 545 GGRLYNVVVDTEDTGKQLLQRGNLRRRVTI 574 (1174)
T ss_pred cCcceeEEeechHHHHHHhhcccccceeEE
Confidence 778888877 55567777887776544333
No 132
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=96.36 E-value=0.81 Score=53.32 Aligned_cols=209 Identities=17% Similarity=0.256 Sum_probs=109.5
Q ss_pred hHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHhhhHHHHHHHHHhhhhhhhhh----
Q 007520 64 NLVTQVELLTAKIEMQQKLRENDKYEFEKQLRESQISYDESMRNLVTRSEFLEKENAHLELEVEKILGELNHQKDQ---- 139 (600)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~---- 139 (600)
++..+|++|+..|+. +...|.||+-.-..|+..=..+...+..|++||-.|+-.+-.|....++-|..
T Consensus 422 rLE~dvkkLraeLq~--------~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~L 493 (697)
T PF09726_consen 422 RLEADVKKLRAELQS--------SRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQL 493 (697)
T ss_pred HHHHHHHHHHHHHHh--------hhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455577777766653 36778888877777777777777778788888887777777666655444432
Q ss_pred ---hhhHHHHHHHHHHhhhhhhhhh-hhhhHHhh--------------hhhhhhhhhHHHHHHHHHHhHhHHHhhhhhHH
Q 007520 140 ---NNLKREKIVQLEISLKNSKQYE-MENSTYQK--------------ALADTTQLYEKKIAELNKKLEDEHACFEGAVE 201 (600)
Q Consensus 140 ---~~~~~~~~~~~~~~~~~~~~~~-~~n~~~~~--------------~l~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~ 201 (600)
-.+..+....+|.+|.+=+... .|--+-.+ .+....+++|.++..|.. -....++
T Consensus 494 EkrL~eE~~~R~~lEkQL~eErk~r~~ee~~aar~~~~~~~~r~e~~e~~r~r~~~lE~E~~~lr~-------elk~kee 566 (697)
T PF09726_consen 494 EKRLAEERRQRASLEKQLQEERKARKEEEEKAARALAQAQATRQECAESCRQRRRQLESELKKLRR-------ELKQKEE 566 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhccccchhccchhHHHHHHHHHHHHHHHHHHHH-------HHHHHHH
Confidence 2233444555565555544332 11111111 122223333333333332 2344566
Q ss_pred HHHHHHHHHhhhhhc-ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHhhhH------
Q 007520 202 QLDMVKKLLSDYQNS-NQGQKEVHELCVKLKETRQLHESAVYEVQTLKSEYKNLLEEKETMSDELQAARQRLLV------ 274 (600)
Q Consensus 202 ~~~~~~~~~~~~q~~-~~~~~e~~~l~~~~~d~~~~~e~~~~el~~l~~~~~~l~~~~~~~~~el~~~~~~l~~------ 274 (600)
++..|..=+..++++ .-.+.|.+.|..++.-++..-..+ ...++...+.+.++...|-.-+..+..
T Consensus 567 ~~~~~e~~~~~lr~~~~e~~~~~e~L~~aL~amqdk~~~L-------E~sLsaEtriKldLfsaLg~akrq~ei~~~~~~ 639 (697)
T PF09726_consen 567 QIRELESELQELRKYEKESEKDTEVLMSALSAMQDKNQHL-------ENSLSAETRIKLDLFSALGDAKRQLEIAQGQLR 639 (697)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH-------HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666555556665 333445666666655555555542 222223334444444444444444433
Q ss_pred -HHHhhhhHHHHHHHHhccCC
Q 007520 275 -EEKQRKAIEYELVKLKKTAP 294 (600)
Q Consensus 275 -e~~~~~~le~~~~~l~~~l~ 294 (600)
.+..+.+++.-++.+....+
T Consensus 640 ~~d~ei~~lk~ki~~~~av~p 660 (697)
T PF09726_consen 640 KKDKEIEELKAKIAQLLAVMP 660 (697)
T ss_pred HHHHHHHHHHHHHHHHHhcCC
Confidence 44445555555555544443
No 133
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=96.33 E-value=0.0062 Score=46.65 Aligned_cols=55 Identities=25% Similarity=0.211 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHhhCCcchHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHh
Q 007520 361 PDVQIHAVKVVANLAAEDINQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANL 416 (600)
Q Consensus 361 ~~vr~~Aa~aL~nLa~~~~~~~~iv~~G~I~~Lv~lL~~~~~~~v~~~Al~aL~NL 416 (600)
+.+|..|+++|++++.............+++.|+.+|. +++..|+..|+++|.+|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~-d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQ-DDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTT-SSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHhcC
Confidence 46899999999998875444333344447999999998 56779999999999875
No 134
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.32 E-value=0.056 Score=61.18 Aligned_cols=216 Identities=13% Similarity=0.104 Sum_probs=135.1
Q ss_pred cccCchHHHhcccCCCCccccchHHHH---hhc-CchhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhC-Ccch
Q 007520 306 YTKDYISKGSSRFGAPMSLQKSNPSRE---LSG-QRATIAKICDEVGLPKILQLLTSEDPDVQIHAVKVVANLAA-EDIN 380 (600)
Q Consensus 306 ~~~g~i~~Lv~~L~s~~~~~r~~a~~~---L~~-~~~~~~~i~e~GgV~~Lv~LL~s~~~~vr~~Aa~aL~nLa~-~~~~ 380 (600)
+.++..+.++.++.+..+-.|-.|... ++. +++.. ...+|.|+.-|..+|+.|+..|+.+++-|+. +|.|
T Consensus 141 LARDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeAl-----r~~FprL~EkLeDpDp~V~SAAV~VICELArKnPkn 215 (877)
T KOG1059|consen 141 LARDLADDVFTLLNSSKPYVRKKAILLLYKVFLKYPEAL-----RPCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQN 215 (877)
T ss_pred hhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhhHhH-----hhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcc
Confidence 344555666677777766666665544 222 33322 2357889999999999999999999999998 7877
Q ss_pred HHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcC-CccHHHHHHhCchhhhHhhhccCCCHHHHHHHHHHHH--H
Q 007520 381 QEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMN-EMNQGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALA--N 457 (600)
Q Consensus 381 ~~~iv~~G~I~~Lv~lL~~~~~~~v~~~Al~aL~NLa~~-~~~r~~I~~~G~I~~Lv~lL~~~~~~~v~~~Aa~aL~--n 457 (600)
.-.+ -|.+..+|.++.+.=+....+...++|+-- |..... .+++|.+++.++....+...++.++- |
T Consensus 216 yL~L-----AP~ffkllttSsNNWmLIKiiKLF~aLtplEPRLgKK-----Lieplt~li~sT~AmSLlYECvNTVVa~s 285 (877)
T KOG1059|consen 216 YLQL-----APLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLGKK-----LIEPITELMESTVAMSLLYECVNTVVAVS 285 (877)
T ss_pred cccc-----cHHHHHHHhccCCCeehHHHHHHHhhccccCchhhhh-----hhhHHHHHHHhhHHHHHHHHHHHHheeeh
Confidence 5322 366677777666655566667777777765 433332 56777777754333344444444222 3
Q ss_pred Hh-CCchhHHHHHHcChHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchhhhhcchhhHHHHHhCCcHHHHHHhhcCCCH
Q 007520 458 LC-GNEKLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSKTNSA 536 (600)
Q Consensus 458 La-~~~e~r~~i~~~G~i~~Lv~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~q~~~~~r~~l~e~g~l~~Lv~Ll~s~~~ 536 (600)
++ +.++.-..+ .-++..|=.++.+.|+.++.-++-+++-++...|.+.. .--..+++.+.+.|+
T Consensus 286 ~s~g~~d~~asi--qLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vq-------------a~kdlIlrcL~DkD~ 350 (877)
T KOG1059|consen 286 MSSGMSDHSASI--QLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQ-------------AHKDLILRCLDDKDE 350 (877)
T ss_pred hccCCCCcHHHH--HHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHH-------------HhHHHHHHHhccCCc
Confidence 32 212221111 12455555566788888888888888888766543221 134566778888888
Q ss_pred HHHHHHHHHHHHhhc
Q 007520 537 STRRHVELALCHLAQ 551 (600)
Q Consensus 537 ~v~~~Aa~aL~nLa~ 551 (600)
.+|-+|...|.-|+.
T Consensus 351 SIRlrALdLl~gmVs 365 (877)
T KOG1059|consen 351 SIRLRALDLLYGMVS 365 (877)
T ss_pred hhHHHHHHHHHHHhh
Confidence 888888888887754
No 135
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=96.31 E-value=0.053 Score=63.38 Aligned_cols=138 Identities=17% Similarity=0.112 Sum_probs=115.5
Q ss_pred HHHHHHHHHHHhhC-CcchHHHHH----HcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcCCccHHHHHHhCchhhhHh
Q 007520 363 VQIHAVKVVANLAA-EDINQEKIV----EEGGLDALLLLLRTSQNTTILRVASGAIANLAMNEMNQGLIMSRGGGQLLAK 437 (600)
Q Consensus 363 vr~~Aa~aL~nLa~-~~~~~~~iv----~~G~I~~Lv~lL~~~~~~~v~~~Al~aL~NLa~~~~~r~~I~~~G~I~~Lv~ 437 (600)
-..-+..+|.|+.. +|+....+. -.|..+.+..+++...++.+...|+.++.-++.+.++-..++..|.+..|+.
T Consensus 1741 ~v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan~~Cv~~~a~~~vL~~LL~ 1820 (2235)
T KOG1789|consen 1741 KVLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATANKECVTDLATCNVLTTLLT 1820 (2235)
T ss_pred HHHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcccHHHHHHHhhhHHHHHHH
Confidence 34567889999876 775433322 3456788888888778888999999999999999999999999999999999
Q ss_pred hhccCCCHHHHHHHHHHHHHHhCCchhHHHHHHcChHHHHHHHH-cCCCHHHHHHHHHHHHHhhcC
Q 007520 438 TASKTDDPQTLRMVAGALANLCGNEKLHTMLEEDGAIKALLAMV-RSGNIDVIAQVARGLANFAKC 502 (600)
Q Consensus 438 lL~~~~~~~v~~~Aa~aL~nLa~~~e~r~~i~~~G~i~~Lv~lL-~s~~~~v~~~A~~aL~nLa~~ 502 (600)
+|- .-|..+..++.+|..|+.++++.......|++.-++.++ .+.++.++.+++..|+-|..+
T Consensus 1821 lLH--S~PS~R~~vL~vLYAL~S~~~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Ad 1884 (2235)
T KOG1789|consen 1821 LLH--SQPSMRARVLDVLYALSSNGQIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQAD 1884 (2235)
T ss_pred HHh--cChHHHHHHHHHHHHHhcCcHHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhc
Confidence 994 467889999999999999999998889999999888887 578889999999999999764
No 136
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=96.24 E-value=0.23 Score=52.85 Aligned_cols=208 Identities=13% Similarity=0.052 Sum_probs=148.2
Q ss_pred HHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhC-CcchHH--H--HHHcCCHHHHHHHHccCCCHHHHHHHHHHHHH
Q 007520 341 AKICDEVGLPKILQLLTSEDPDVQIHAVKVVANLAA-EDINQE--K--IVEEGGLDALLLLLRTSQNTTILRVASGAIAN 415 (600)
Q Consensus 341 ~~i~e~GgV~~Lv~LL~s~~~~vr~~Aa~aL~nLa~-~~~~~~--~--iv~~G~I~~Lv~lL~~~~~~~v~~~Al~aL~N 415 (600)
..+...|-+..|+..|..-+-+.|..++.+..++.. ..+.+. . .+....-..|..++....++++.-.+...|+.
T Consensus 70 ~Ei~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~dial~~g~mlRe 149 (335)
T PF08569_consen 70 QEIYRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENPDIALNCGDMLRE 149 (335)
T ss_dssp HHHHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGSTTTHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCccccchHHHHHHH
Confidence 456667888899999998899999999999999886 333332 1 12221122333344445567777889999999
Q ss_pred hhcCCccHHHHHHhCchhhhHhhhccCCCHHHHHHHHHHHHHH-hCCchhHHHHHHc---ChHHHHHHHHcCCCHHHHHH
Q 007520 416 LAMNEMNQGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANL-CGNEKLHTMLEED---GAIKALLAMVRSGNIDVIAQ 491 (600)
Q Consensus 416 La~~~~~r~~I~~~G~I~~Lv~lL~~~~~~~v~~~Aa~aL~nL-a~~~e~r~~i~~~---G~i~~Lv~lL~s~~~~v~~~ 491 (600)
.+.++.....|.....+..+..... .++-++...|..++..| ..++.....+... ..+.....+|.+++.-++++
T Consensus 150 c~k~e~l~~~iL~~~~f~~ff~~~~-~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrq 228 (335)
T PF08569_consen 150 CIKHESLAKIILYSECFWKFFKYVQ-LPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQ 228 (335)
T ss_dssp HTTSHHHHHHHHTSGGGGGHHHHTT-SSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHH
T ss_pred HHhhHHHHHHHhCcHHHHHHHHHhc-CCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehh
Confidence 9999988888988777878888774 47779999999988886 5667777776654 35566777789999999999
Q ss_pred HHHHHHHhhcCCchhhhhcchhhHHHHHhCCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCch
Q 007520 492 VARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSKTNSASTRRHVELALCHLAQNED 554 (600)
Q Consensus 492 A~~aL~nLa~~~~~~~~q~~~~~r~~l~e~g~l~~Lv~Ll~s~~~~v~~~Aa~aL~nLa~~~~ 554 (600)
++..|+.|-.+.++. ......+-+..-+..++.++++.+..+|..|-.++-..+.+|.
T Consensus 229 slkLL~ellldr~n~-----~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp~ 286 (335)
T PF08569_consen 229 SLKLLGELLLDRSNF-----NVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANPN 286 (335)
T ss_dssp HHHHHHHHHHSGGGH-----HHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-SS
T ss_pred hHHHHHHHHHchhHH-----HHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCCC
Confidence 999999998664321 1112223345678888999999999999999999988877665
No 137
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=96.12 E-value=2.1 Score=44.57 Aligned_cols=139 Identities=22% Similarity=0.281 Sum_probs=88.7
Q ss_pred HHHHHHhHHHHHHHhhhHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHhhhhhhhhhhhhhHHhhhhhhhhh---hhHHH
Q 007520 105 MRNLVTRSEFLEKENAHLELEVEKILGELNHQKDQNNLKREKIVQLEISLKNSKQYEMENSTYQKALADTTQ---LYEKK 181 (600)
Q Consensus 105 ~~~l~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~---~~~~~ 181 (600)
+..|..|+.-|+-||.+|+.|...|..+-. ..-++..+| +.|-+. ....+
T Consensus 162 le~Lq~Klk~LEeEN~~LR~Ea~~L~~et~-------~~EekEqqL--------------------v~dcv~QL~~An~q 214 (306)
T PF04849_consen 162 LEALQEKLKSLEEENEQLRSEASQLKTETD-------TYEEKEQQL--------------------VLDCVKQLSEANQQ 214 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHh-------hccHHHHHH--------------------HHHHHHHhhhcchh
Confidence 578888888888889888888888765521 111111111 112222 22345
Q ss_pred HHHHHHHhHhHHHhhhhhHHHHHHHHHHHhhhhhcccchh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 007520 182 IAELNKKLEDEHACFEGAVEQLDMVKKLLSDYQNSNQGQK-EVHELCVKLKETRQLHESAVYEVQTLKSEYKNLLEEKET 260 (600)
Q Consensus 182 ~~~l~~~l~~e~~~~~~~~~~~~~~~~~~~~~q~~~~~~~-e~~~l~~~~~d~~~~~e~~~~el~~l~~~~~~l~~~~~~ 260 (600)
++.|+.-|..-.-....-++++..|...+-|+|+.-+... |...|...+..+..--..+..|+++++.+.++-..-...
T Consensus 215 ia~LseELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~E~~~mL~E 294 (306)
T PF04849_consen 215 IASLSEELARKTEENRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKYAECMAMLHE 294 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666655554444445566777777777777777776665 777777777777766667777888888777666555555
Q ss_pred chHHHHHHHH
Q 007520 261 MSDELQAARQ 270 (600)
Q Consensus 261 ~~~el~~~~~ 270 (600)
..+|+..+++
T Consensus 295 aQEElk~lR~ 304 (306)
T PF04849_consen 295 AQEELKTLRK 304 (306)
T ss_pred HHHHHHHhhC
Confidence 6667666654
No 138
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.06 E-value=3.9 Score=47.08 Aligned_cols=69 Identities=16% Similarity=0.050 Sum_probs=32.3
Q ss_pred HhhhhhhhhhhhhHHHHHHHHHHhhhhhhhhhhhhhHHhhhhhhhhhhhHHHHHHHHHHhHhHHHhhhh
Q 007520 130 LGELNHQKDQNNLKREKIVQLEISLKNSKQYEMENSTYQKALADTTQLYEKKIAELNKKLEDEHACFEG 198 (600)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~l~~~l~~e~~~~~~ 198 (600)
++..|.++..+-....+.-+|+.+|+..+-+.-.-+....-+.--+.....+|..+.++.+-..+-+..
T Consensus 422 ~~Qk~reqe~iv~~nak~~ql~~eletLn~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~isei~q 490 (1118)
T KOG1029|consen 422 LNQKNREQEWIVYLNAKKKQLQQELETLNFKLQQLSGKLQDVRVDITTQKTEIEEVTKQRELMISEIDQ 490 (1118)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhheeccchHHHHHHHhhhHHHHHHHHHHH
Confidence 334444455555566666677777766554432222222222222333444555555555544443333
No 139
>PRK11637 AmiB activator; Provisional
Probab=96.02 E-value=3.2 Score=45.73 Aligned_cols=7 Identities=14% Similarity=0.382 Sum_probs=2.8
Q ss_pred HHHHHHH
Q 007520 23 ETQVDHL 29 (600)
Q Consensus 23 ~~~~~~~ 29 (600)
+.+++.+
T Consensus 46 ~~~l~~l 52 (428)
T PRK11637 46 RDQLKSI 52 (428)
T ss_pred HHHHHHH
Confidence 3344433
No 140
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=96.01 E-value=0.21 Score=47.22 Aligned_cols=123 Identities=15% Similarity=0.194 Sum_probs=97.1
Q ss_pred HHHHHHcCCHHHHHHHHccCCC-----HHHHHHHHHHHHHhhcCCccHHHHHHhCchhhhHhhhccCC-CHHHHHHHHHH
Q 007520 381 QEKIVEEGGLDALLLLLRTSQN-----TTILRVASGAIANLAMNEMNQGLIMSRGGGQLLAKTASKTD-DPQTLRMVAGA 454 (600)
Q Consensus 381 ~~~iv~~G~I~~Lv~lL~~~~~-----~~v~~~Al~aL~NLa~~~~~r~~I~~~G~I~~Lv~lL~~~~-~~~v~~~Aa~a 454 (600)
...|+..||+..|+.++.++.. .++...++.|+..|-.+...-....+...|..++....... ++.+...+...
T Consensus 4 A~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaI 83 (160)
T PF11841_consen 4 AQEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAI 83 (160)
T ss_pred HHHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHHH
Confidence 4578899999999999986653 46777888899988887665566666667777777775433 67899999999
Q ss_pred HHHHhCCc-hhHHHHHHcChHHHHHHHHcCCCHHHHHHHHHHHHHhhcCC
Q 007520 455 LANLCGNE-KLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFAKCE 503 (600)
Q Consensus 455 L~nLa~~~-e~r~~i~~~G~i~~Lv~lL~s~~~~v~~~A~~aL~nLa~~~ 503 (600)
|-+++.+. .....+.+.=-++.|+..|+..++.++..|...+-.|-...
T Consensus 84 LEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA 133 (160)
T PF11841_consen 84 LESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKA 133 (160)
T ss_pred HHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcC
Confidence 99998665 44666666667889999999999999999999998886543
No 141
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=95.98 E-value=4.3 Score=46.88 Aligned_cols=43 Identities=19% Similarity=0.088 Sum_probs=26.1
Q ss_pred HHHHHhhhHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHhhhh
Q 007520 114 FLEKENAHLELEVEKILGELNHQKDQNNLKREKIVQLEISLKN 156 (600)
Q Consensus 114 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (600)
..-....-|+.++.-|...+.+=+....-...++..||..+.-
T Consensus 493 ~~~q~~k~L~~ek~~l~~~i~~l~~~~~~~~~~i~~leeq~~~ 535 (698)
T KOG0978|consen 493 KANQKHKLLREEKSKLEEQILTLKASVDKLELKIGKLEEQERG 535 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555566666666666666666666666666666665443
No 142
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=95.96 E-value=0.57 Score=55.18 Aligned_cols=247 Identities=17% Similarity=0.148 Sum_probs=147.5
Q ss_pred HHhcCCHHHHHHhhCC-----CCHHHHHHHHHHHHHhhCCcchHHHHHHcCCHHHHHHHHc---cCCC----HHHHHHHH
Q 007520 343 ICDEVGLPKILQLLTS-----EDPDVQIHAVKVVANLAAEDINQEKIVEEGGLDALLLLLR---TSQN----TTILRVAS 410 (600)
Q Consensus 343 i~e~GgV~~Lv~LL~s-----~~~~vr~~Aa~aL~nLa~~~~~~~~iv~~G~I~~Lv~lL~---~~~~----~~v~~~Al 410 (600)
+.+.||+..++.++.+ .........+..|..++.-+.||..+++.|+++.|+..|. .... ..+.+..+
T Consensus 113 ~~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL 192 (802)
T PF13764_consen 113 LAECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKVKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLL 192 (802)
T ss_pred hhcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhhHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHH
Confidence 4568999999988863 3445666677778888888999999999999999998875 2222 34445444
Q ss_pred HHHHHhhcC---CccHHH--HHHhC--------chhhhHhhhccC---CCHHHHHHHHHHHHHHhCC-chhHHHHHHcCh
Q 007520 411 GAIANLAMN---EMNQGL--IMSRG--------GGQLLAKTASKT---DDPQTLRMVAGALANLCGN-EKLHTMLEEDGA 473 (600)
Q Consensus 411 ~aL~NLa~~---~~~r~~--I~~~G--------~I~~Lv~lL~~~---~~~~v~~~Aa~aL~nLa~~-~e~r~~i~~~G~ 473 (600)
.++-.|... ...... ..... -+..++..+... .++.+....+++|-+|+.. ++....+++ .
T Consensus 193 ~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~--~ 270 (802)
T PF13764_consen 193 EIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVE--H 270 (802)
T ss_pred HHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHH--H
Confidence 444444332 111110 01111 255555555332 4678888999999999855 444444444 2
Q ss_pred HHHHHHHH--c---CCCHHHHHHHHHHHHHhhcCCchhhhhcchhhHHHHHhCCcHHHHHHhhcCC--------CHHH--
Q 007520 474 IKALLAMV--R---SGNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSKTN--------SAST-- 538 (600)
Q Consensus 474 i~~Lv~lL--~---s~~~~v~~~A~~aL~nLa~~~~~~~~q~~~~~r~~l~e~g~l~~Lv~Ll~s~--------~~~v-- 538 (600)
+.+.+.+= . .++.. ..+..++.++..-+... .....|..+++.|.+...+.++... ++..
T Consensus 271 F~p~l~f~~~D~~~~~~~~---~~Le~F~~i~~~I~~~~--~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~eWk~ 345 (802)
T PF13764_consen 271 FKPYLDFDKFDEEHSPDEQ---FKLECFCEIAEGIPNNS--NGNRLKDKILESGIVQDAIDYLLKHFPSLKNTDSPEWKE 345 (802)
T ss_pred HHHhcChhhcccccCchHH---HHHHHHHHHHhcCCCCC--chHHHHHHHHHhhHHHHHHHHHHHhCcccccCCCHHHHH
Confidence 22322321 1 12222 23555555554322111 1246788999999999888876442 2222
Q ss_pred ------HHHHHHHHHHhhcCchhHHHHHHcccHHHHHHhhhcCChHH---HHHHHHHHHhcCccccc
Q 007520 539 ------RRHVELALCHLAQNEDNARDFISRGGAKELVQISIESSRED---IRNLAKKTMKSNPRLQA 596 (600)
Q Consensus 539 ------~~~Aa~aL~nLa~~~~~~~~lv~~G~l~~Lv~ll~~~~~~~---ir~~A~~~L~~~p~~~~ 596 (600)
--.+...|.-||.+....+.++..++++.|-.+=.-++... +.+....+|+.+|....
T Consensus 346 ~l~~psLp~iL~lL~GLa~gh~~tQ~~~~~~~l~~lH~LEqvss~~~IGslAEnlLeal~~~~~v~~ 412 (802)
T PF13764_consen 346 FLSRPSLPYILRLLRGLARGHEPTQLLIAEQLLPLLHRLEQVSSEEHIGSLAENLLEALAENEDVAK 412 (802)
T ss_pred HhcCCcHHHHHHHHHHHHhcCHHHHHHHHhhHHHHHHHhhcCCCccchHHHHHHHHHHHhcChhHHH
Confidence 23477778888887777777788888866665554443333 44555577777776443
No 143
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.95 E-value=0.16 Score=56.22 Aligned_cols=228 Identities=17% Similarity=0.144 Sum_probs=149.3
Q ss_pred cccCchHHHhcccCCCCccccchH---HHH-h---hcCchhHHHHHhc-CCHHHHHHhhCCCCHHHHHHHHHHHHHhhCC
Q 007520 306 YTKDYISKGSSRFGAPMSLQKSNP---SRE-L---SGQRATIAKICDE-VGLPKILQLLTSEDPDVQIHAVKVVANLAAE 377 (600)
Q Consensus 306 ~~~g~i~~Lv~~L~s~~~~~r~~a---~~~-L---~~~~~~~~~i~e~-GgV~~Lv~LL~s~~~~vr~~Aa~aL~nLa~~ 377 (600)
+-...++-|..++...+...+..+ +.. | ...++.. +- .-++.++.-+.+.++.++..|..-|.-...-
T Consensus 205 yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~s~----d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i 280 (675)
T KOG0212|consen 205 YLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSPSSM----DYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKI 280 (675)
T ss_pred cchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCcccc----CcccchhhccccccCCcHHHHHHHHHHHHHHhcC
Confidence 445566667777777766665322 222 2 2222221 22 2367788889999999999998888777775
Q ss_pred cchHHHHHHcCCHHHHHHHHccCCCHHHHHHH---HHHHHHhhcCCccHHHHHH-hCchhhhHhhhccCCCHHHHHHHHH
Q 007520 378 DINQEKIVEEGGLDALLLLLRTSQNTTILRVA---SGAIANLAMNEMNQGLIMS-RGGGQLLAKTASKTDDPQTLRMVAG 453 (600)
Q Consensus 378 ~~~~~~iv~~G~I~~Lv~lL~~~~~~~v~~~A---l~aL~NLa~~~~~r~~I~~-~G~I~~Lv~lL~~~~~~~v~~~Aa~ 453 (600)
++......-.|++..++.++...+...++..+ -+.|..+...+..... ++ ...+..+...+++ +...++..+..
T Consensus 281 ~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~-id~~~ii~vl~~~l~~-~~~~tri~~L~ 358 (675)
T KOG0212|consen 281 PGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEE-IDYGSIIEVLTKYLSD-DREETRIAVLN 358 (675)
T ss_pred CCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccc-cchHHHHHHHHHHhhc-chHHHHHHHHH
Confidence 55555556677778888888744443344332 2334555554333333 33 2345666777743 66678888888
Q ss_pred HHHHHhCCchhHHHHHHcChHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchhhhhcchhhHHHHHhCCcHHHHHHhhcC
Q 007520 454 ALANLCGNEKLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSKT 533 (600)
Q Consensus 454 aL~nLa~~~e~r~~i~~~G~i~~Lv~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~q~~~~~r~~l~e~g~l~~Lv~Ll~s 533 (600)
.+..|-....++-...-....+.|+.-|.+.+..|...++..++++|.+... +..+ ..+.-|+.+...
T Consensus 359 Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~~~------~~~~------~fl~sLL~~f~e 426 (675)
T KOG0212|consen 359 WIILLYHKAPGQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSSSNS------PNLR------KFLLSLLEMFKE 426 (675)
T ss_pred HHHHHHhhCcchhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCccc------ccHH------HHHHHHHHHHhh
Confidence 8887766655655555667888899999999999999999999999976421 2222 233445556666
Q ss_pred CCHHHHHHHHHHHHHhhc
Q 007520 534 NSASTRRHVELALCHLAQ 551 (600)
Q Consensus 534 ~~~~v~~~Aa~aL~nLa~ 551 (600)
+..-+..+|..+++.||.
T Consensus 427 ~~~~l~~Rg~lIIRqlC~ 444 (675)
T KOG0212|consen 427 DTKLLEVRGNLIIRQLCL 444 (675)
T ss_pred hhHHHHhhhhHHHHHHHH
Confidence 777788899999999875
No 144
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=95.93 E-value=0.19 Score=56.32 Aligned_cols=174 Identities=12% Similarity=0.034 Sum_probs=113.4
Q ss_pred CHHHHHHHHHHHHHhhCCcchHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcCCccHHHHHHhCchhhhHhhh
Q 007520 360 DPDVQIHAVKVVANLAAEDINQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMNEMNQGLIMSRGGGQLLAKTA 439 (600)
Q Consensus 360 ~~~vr~~Aa~aL~nLa~~~~~~~~iv~~G~I~~Lv~lL~~~~~~~v~~~Al~aL~NLa~~~~~r~~I~~~G~I~~Lv~lL 439 (600)
......+++..|+.++.+.+.+-...-...||.+...|- +..++++..+..+|..++...+|.. |.. .+|.|+..+
T Consensus 267 kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~-DT~~evr~a~~~~l~~~~svidN~d-I~~--~ip~Lld~l 342 (569)
T KOG1242|consen 267 KWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLW-DTKPEVRKAGIETLLKFGSVIDNPD-IQK--IIPTLLDAL 342 (569)
T ss_pred hhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHc-cCCHHHHHHHHHHHHHHHHhhccHH-HHH--HHHHHHHHh
Confidence 556778899999999988888877787789999999998 7789999999999999998866666 222 578888888
Q ss_pred ccCCCHHHHHHHHHHHHHHhCCchhHHHHHHcCh----HHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchhhhhcchhhH
Q 007520 440 SKTDDPQTLRMVAGALANLCGNEKLHTMLEEDGA----IKALLAMVRSGNIDVIAQVARGLANFAKCESRAIVQGQRKGR 515 (600)
Q Consensus 440 ~~~~~~~v~~~Aa~aL~nLa~~~e~r~~i~~~G~----i~~Lv~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~q~~~~~r 515 (600)
.++ .. -...+...|..-..-.. ++.-. +|.|-+-+...+..+.+.++-++.|+|+--++ +..-
T Consensus 343 ~dp-~~-~~~e~~~~L~~ttFV~~-----V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveD------p~~l 409 (569)
T KOG1242|consen 343 ADP-SC-YTPECLDSLGATTFVAE-----VDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVED------PKDL 409 (569)
T ss_pred cCc-cc-chHHHHHhhcceeeeee-----ecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcC------HHHH
Confidence 542 21 11222223322111111 11222 34444445567778889999999999864211 0000
Q ss_pred HHHHhCCcHHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 007520 516 SHLMEDSALEWLIANSKTNSASTRRHVELALCHLAQ 551 (600)
Q Consensus 516 ~~l~e~g~l~~Lv~Ll~s~~~~v~~~Aa~aL~nLa~ 551 (600)
..+. ...+|-|-..+.+..|.+|.-++.+|+.+-.
T Consensus 410 apfl-~~Llp~lk~~~~d~~PEvR~vaarAL~~l~e 444 (569)
T KOG1242|consen 410 APFL-PSLLPGLKENLDDAVPEVRAVAARALGALLE 444 (569)
T ss_pred hhhH-HHHhhHHHHHhcCCChhHHHHHHHHHHHHHH
Confidence 0011 1234444445666689999999999987744
No 145
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.88 E-value=0.035 Score=61.19 Aligned_cols=227 Identities=13% Similarity=0.098 Sum_probs=139.7
Q ss_pred hcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCcchHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcC-CccH
Q 007520 345 DEVGLPKILQLLTSEDPDVQIHAVKVVANLAAEDINQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMN-EMNQ 423 (600)
Q Consensus 345 e~GgV~~Lv~LL~s~~~~vr~~Aa~aL~nLa~~~~~~~~iv~~G~I~~Lv~lL~~~~~~~v~~~Al~aL~NLa~~-~~~r 423 (600)
-.+-+++++..+...+..+|..||..|.|++.-........-......|+.+.. +.+..++. ++..|-.|-.. ..-+
T Consensus 82 ~~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsa-Dsd~~V~~-~aeLLdRLikdIVte~ 159 (675)
T KOG0212|consen 82 LEKIVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSA-DSDQNVRG-GAELLDRLIKDIVTES 159 (675)
T ss_pred HHHhhHHHHHhccCccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhc-CCcccccc-HHHHHHHHHHHhcccc
Confidence 456789999999999999999999999999863222111112223455666655 55555554 44444444322 0001
Q ss_pred H-HHHHhCchhhhHhhhccCCCHHHHHHHHHHHHHHhCCchhHHHHHHcChHHHHHHHHcCCCHHHHHHHHHHHHHhhcC
Q 007520 424 G-LIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLCGNEKLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFAKC 502 (600)
Q Consensus 424 ~-~I~~~G~I~~Lv~lL~~~~~~~v~~~Aa~aL~nLa~~~e~r~~i~~~G~i~~Lv~lL~s~~~~v~~~A~~aL~nLa~~ 502 (600)
. .+-=.+.||.|-.-+. ..+|.++...+..|.-|-.-|+....=.-...++-|+.+|.+.++.|+..+-.+|.++-..
T Consensus 160 ~~tFsL~~~ipLL~eriy-~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~e 238 (675)
T KOG0212|consen 160 ASTFSLPEFIPLLRERIY-VINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAE 238 (675)
T ss_pred ccccCHHHHHHHHHHHHh-cCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHH
Confidence 1 1111334555555553 3678899999988887765554422111234667789999999999998887777776421
Q ss_pred ---CchhhhhcchhhHHHHHhCCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCchhHHHHHHcccHHHHHHhhhcCChHH
Q 007520 503 ---ESRAIVQGQRKGRSHLMEDSALEWLIANSKTNSASTRRHVELALCHLAQNEDNARDFISRGGAKELVQISIESSRED 579 (600)
Q Consensus 503 ---~~~~~~q~~~~~r~~l~e~g~l~~Lv~Ll~s~~~~v~~~Aa~aL~nLa~~~~~~~~lv~~G~l~~Lv~ll~~~~~~~ 579 (600)
+|. .|--...++.++..++++++.++..|..-+..+..-++..--.--+|.+..++.++.+.....
T Consensus 239 I~s~P~-----------s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~ 307 (675)
T KOG0212|consen 239 IRSSPS-----------SMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMS 307 (675)
T ss_pred HhcCcc-----------ccCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCcccc
Confidence 111 012245788888899999999998887777777665554444445566666666665443323
Q ss_pred HHHHHH
Q 007520 580 IRNLAK 585 (600)
Q Consensus 580 ir~~A~ 585 (600)
+++.|.
T Consensus 308 i~~~a~ 313 (675)
T KOG0212|consen 308 IKEYAQ 313 (675)
T ss_pred HHHHHH
Confidence 444443
No 146
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=95.69 E-value=0.16 Score=48.07 Aligned_cols=118 Identities=10% Similarity=0.162 Sum_probs=89.9
Q ss_pred HHHHhcCCHHHHHHhhCCCC------HHHHHHHHHHHHHhhCCcchHHHHHHcCCHHHHHHHHccCC-CHHHHHHHHHHH
Q 007520 341 AKICDEVGLPKILQLLTSED------PDVQIHAVKVVANLAAEDINQEKIVEEGGLDALLLLLRTSQ-NTTILRVASGAI 413 (600)
Q Consensus 341 ~~i~e~GgV~~Lv~LL~s~~------~~vr~~Aa~aL~nLa~~~~~~~~iv~~G~I~~Lv~lL~~~~-~~~v~~~Al~aL 413 (600)
..++..||++.|+.++.++. ......+..++..|..+....-..+....|..++....... +..+...|+..|
T Consensus 5 ~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaIL 84 (160)
T PF11841_consen 5 QEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAIL 84 (160)
T ss_pred HHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHHHH
Confidence 56889999999999997665 36677788888888776554445555557777888876444 788999999999
Q ss_pred HHhhcCCcc-HHHHHHhCchhhhHhhhccCCCHHHHHHHHHHHHHHh
Q 007520 414 ANLAMNEMN-QGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLC 459 (600)
Q Consensus 414 ~NLa~~~~~-r~~I~~~G~I~~Lv~lL~~~~~~~v~~~Aa~aL~nLa 459 (600)
-++..+... ...+.+.=.++.|+..|.. .++.++..+...+-.|-
T Consensus 85 Es~Vl~S~~ly~~V~~evt~~~Li~hLq~-~~~~iq~naiaLinAL~ 130 (160)
T PF11841_consen 85 ESIVLNSPKLYQLVEQEVTLESLIRHLQV-SNQEIQTNAIALINALF 130 (160)
T ss_pred HHHHhCCHHHHHHHhccCCHHHHHHHHHc-CCHHHHHHHHHHHHHHH
Confidence 999998554 5555556678889999965 78889888888776663
No 147
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=95.54 E-value=0.44 Score=55.39 Aligned_cols=168 Identities=11% Similarity=0.101 Sum_probs=107.8
Q ss_pred hCCCCHHHHHHHHH-HHHHhhCCcchHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcCCccHHHHHHhCchhh
Q 007520 356 LTSEDPDVQIHAVK-VVANLAAEDINQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMNEMNQGLIMSRGGGQL 434 (600)
Q Consensus 356 L~s~~~~vr~~Aa~-aL~nLa~~~~~~~~iv~~G~I~~Lv~lL~~~~~~~v~~~Al~aL~NLa~~~~~r~~I~~~G~I~~ 434 (600)
+.+.+...+..|.+ +|+.++..++... ..+.+++... ..|.++++.+-.=|.+.+...+ ...+. ++..
T Consensus 28 l~s~n~~~kidAmK~iIa~M~~G~dmss------Lf~dViK~~~-trd~ElKrL~ylYl~~yak~~P-~~~lL---avNt 96 (757)
T COG5096 28 LESSNDYKKIDAMKKIIAQMSLGEDMSS------LFPDVIKNVA-TRDVELKRLLYLYLERYAKLKP-ELALL---AVNT 96 (757)
T ss_pred ccccChHHHHHHHHHHHHHHhcCCChHH------HHHHHHHHHH-hcCHHHHHHHHHHHHHHhccCH-HHHHH---HHHH
Confidence 55666666666655 5556666444221 2455556555 6677888877777777766533 11111 3455
Q ss_pred hHhhhccCCCHHHHHHHHHHHHHHhCCchhHHHHHHcChHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchhhhhcchhh
Q 007520 435 LAKTASKTDDPQTLRMVAGALANLCGNEKLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFAKCESRAIVQGQRKG 514 (600)
Q Consensus 435 Lv~lL~~~~~~~v~~~Aa~aL~nLa~~~e~r~~i~~~G~i~~Lv~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~q~~~~~ 514 (600)
+.+=+. +++|.++..|+++++-|=. ++. -...++++..++.++++.||..|+-++..+=..+
T Consensus 97 i~kDl~-d~N~~iR~~AlR~ls~l~~-~el-----~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld----------- 158 (757)
T COG5096 97 IQKDLQ-DPNEEIRGFALRTLSLLRV-KEL-----LGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLD----------- 158 (757)
T ss_pred HHhhcc-CCCHHHHHHHHHHHHhcCh-HHH-----HHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcC-----------
Confidence 555553 4677888777777764321 111 1235677888888888888888888888885433
Q ss_pred HHHHHhCCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcC
Q 007520 515 RSHLMEDSALEWLIANSKTNSASTRRHVELALCHLAQN 552 (600)
Q Consensus 515 r~~l~e~g~l~~Lv~Ll~s~~~~v~~~Aa~aL~nLa~~ 552 (600)
+..+.+.|.+..+..++.+.+|.|..+|..+|..+...
T Consensus 159 ~~l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 159 KDLYHELGLIDILKELVADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred HhhhhcccHHHHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence 33455677888888888888888888888888877543
No 148
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=95.50 E-value=0.65 Score=46.75 Aligned_cols=137 Identities=12% Similarity=0.075 Sum_probs=100.0
Q ss_pred hhcCchhHHHHHhcCCHHHHHHhhC-----CCCHHHHHHHHHHHHHhhCCc--chHHHHHHcCCHHHHHHHHccCCCHHH
Q 007520 333 LSGQRATIAKICDEVGLPKILQLLT-----SEDPDVQIHAVKVVANLAAED--INQEKIVEEGGLDALLLLLRTSQNTTI 405 (600)
Q Consensus 333 L~~~~~~~~~i~e~GgV~~Lv~LL~-----s~~~~vr~~Aa~aL~nLa~~~--~~~~~iv~~G~I~~Lv~lL~~~~~~~v 405 (600)
++.+++.+..|..+.-=--|..+|. .+.+.+|-.+.++++.|..++ +.-..+...++||..+.++. ..++..
T Consensus 106 vASHpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLrime-~GSelS 184 (293)
T KOG3036|consen 106 VASHPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLRIME-SGSELS 184 (293)
T ss_pred HhcCcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHHHh-cccHHH
Confidence 6779999888888764223335553 446778999999999999843 33555668889999999998 556777
Q ss_pred HHHHHHHHHHhhcCCccHHHHHH----hC----chhhhHhhhccCCCHHHHHHHHHHHHHHhCCchhHHHHHH
Q 007520 406 LRVASGAIANLAMNEMNQGLIMS----RG----GGQLLAKTASKTDDPQTLRMVAGALANLCGNEKLHTMLEE 470 (600)
Q Consensus 406 ~~~Al~aL~NLa~~~~~r~~I~~----~G----~I~~Lv~lL~~~~~~~v~~~Aa~aL~nLa~~~e~r~~i~~ 470 (600)
+..|...+..+-.++.+-.-|+. -- .+..++..|.+.+++.+...++.+..+|+.++..|..+..
T Consensus 185 KtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnprar~aL~~ 257 (293)
T KOG3036|consen 185 KTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNPRARAALRS 257 (293)
T ss_pred HHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHh
Confidence 88899999888888765444433 11 2333444444568889999999999999999988876653
No 149
>PRK09039 hypothetical protein; Validated
Probab=95.48 E-value=1.6 Score=46.75 Aligned_cols=42 Identities=17% Similarity=0.318 Sum_probs=26.6
Q ss_pred hhhhHHHHHHHHHHhHhHHHhhhhhHHHHHHHHHHHhhhhhc
Q 007520 175 TQLYEKKIAELNKKLEDEHACFEGAVEQLDMVKKLLSDYQNS 216 (600)
Q Consensus 175 ~~~~~~~~~~l~~~l~~e~~~~~~~~~~~~~~~~~~~~~q~~ 216 (600)
....+.+...|...|..+.+.+..+..++..|++.|..+...
T Consensus 111 ~~~~~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Q 152 (343)
T PRK09039 111 GAAAEGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQ 152 (343)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 345566666677777777666666666666666666555444
No 150
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.44 E-value=0.54 Score=53.87 Aligned_cols=226 Identities=12% Similarity=0.113 Sum_probs=136.2
Q ss_pred CHHHHHHhhC--CCCHHHHHHHHHHHHHhhCC-------cchHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhc
Q 007520 348 GLPKILQLLT--SEDPDVQIHAVKVVANLAAE-------DINQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAM 418 (600)
Q Consensus 348 gV~~Lv~LL~--s~~~~vr~~Aa~aL~nLa~~-------~~~~~~iv~~G~I~~Lv~lL~~~~~~~v~~~Al~aL~NLa~ 418 (600)
.+..++.-.. .++..+|-.|..+|.|...+ +..|..|.. ..+..- .+++.+++..|..||..+..
T Consensus 173 iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMq-----vvcEat-q~~d~~i~~aa~~ClvkIm~ 246 (859)
T KOG1241|consen 173 ILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQ-----VVCEAT-QSPDEEIQVAAFQCLVKIMS 246 (859)
T ss_pred HHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeee-----eeeecc-cCCcHHHHHHHHHHHHHHHH
Confidence 3677775553 56788999999999985421 222322222 122222 37889999999999998875
Q ss_pred C-CccHHHHHHhCchhhhHhhhccCCCHHHHHHHHHHHHHHhCC----------------chhHHHHH---HcChHHHHH
Q 007520 419 N-EMNQGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLCGN----------------EKLHTMLE---EDGAIKALL 478 (600)
Q Consensus 419 ~-~~~r~~I~~~G~I~~Lv~lL~~~~~~~v~~~Aa~aL~nLa~~----------------~e~r~~i~---~~G~i~~Lv 478 (600)
- -+.-...+....++.-+..+. ++++.|.-.++.--+++|.. +.....+. -.+++|.|+
T Consensus 247 LyY~~m~~yM~~alfaitl~amk-s~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll 325 (859)
T KOG1241|consen 247 LYYEFMEPYMEQALFAITLAAMK-SDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLL 325 (859)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHc-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHH
Confidence 4 222233333334455455554 57778888888766666621 11111222 136788888
Q ss_pred HHHcC--C--CH---HHHHHHHHHHHHhhcCCchhhhhcchhhHHHHHhCCcHHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 007520 479 AMVRS--G--NI---DVIAQVARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSKTNSASTRRHVELALCHLAQ 551 (600)
Q Consensus 479 ~lL~s--~--~~---~v~~~A~~aL~nLa~~~~~~~~q~~~~~r~~l~e~g~l~~Lv~Ll~s~~~~v~~~Aa~aL~nLa~ 551 (600)
.+|.. + +. .+...|..+|.-++.+. +..|+. .++|.+-..+.++|=.-+..|+.++..+-.
T Consensus 326 ~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~-----------~D~Iv~-~Vl~Fiee~i~~pdwr~reaavmAFGSIl~ 393 (859)
T KOG1241|consen 326 ELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCV-----------GDDIVP-HVLPFIEENIQNPDWRNREAAVMAFGSILE 393 (859)
T ss_pred HHHHhCCCCcccccCcHHHHHHHHHHHHHHHh-----------cccchh-hhHHHHHHhcCCcchhhhhHHHHHHHhhhc
Confidence 88832 2 22 24455666666666442 222333 466666667888888889999999988866
Q ss_pred Cch-hHHHHHHcccHHHHHHhhhcCChHHHHHHHH---HHHhcCc
Q 007520 552 NED-NARDFISRGGAKELVQISIESSREDIRNLAK---KTMKSNP 592 (600)
Q Consensus 552 ~~~-~~~~lv~~G~l~~Lv~ll~~~~~~~ir~~A~---~~L~~~p 592 (600)
.++ .+..-+-.+++|.+++++.+++.--....|+ ++...+|
T Consensus 394 gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~ 438 (859)
T KOG1241|consen 394 GPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLP 438 (859)
T ss_pred CCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhch
Confidence 554 4444445678999999998655332334444 4455555
No 151
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=95.33 E-value=0.68 Score=46.90 Aligned_cols=159 Identities=21% Similarity=0.194 Sum_probs=87.4
Q ss_pred HHHHHHHHHhHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHhh
Q 007520 21 KLETQVDHLTAEIERKQKLRENDKCELEKLLRECQISYDEAKDNLVTQVELLTAKIEMQQKLRENDKYEFEKQLRESQIS 100 (600)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (600)
-||.|||+|.-| |+|+-|-- |-+|--+.-...-+.+.+ +|+..||...+.=.... +.||+-+.|+.-+
T Consensus 22 elE~QldkLkKE--~qQrQfQl--eSlEAaLqKQKqK~e~ek----~e~s~LkREnq~l~e~c----~~lek~rqKlshd 89 (307)
T PF10481_consen 22 ELEQQLDKLKKE--RQQRQFQL--ESLEAALQKQKQKVEEEK----NEYSALKRENQSLMESC----ENLEKTRQKLSHD 89 (307)
T ss_pred HHHHHHHHHHHH--HHHHHHhH--HHHHHHHHHHHHHHHHHh----hhhhhhhhhhhhHHHHH----HHHHHHHHHhhHH
Confidence 589999999864 67777751 223322222222222222 35555655554444333 6677777666655
Q ss_pred hH---HHHHHHHHhHHHHHHHhhhHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHhhhhhhhhhhhhhHHhhhhhhhh--
Q 007520 101 YD---ESMRNLVTRSEFLEKENAHLELEVEKILGELNHQKDQNNLKREKIVQLEISLKNSKQYEMENSTYQKALADTT-- 175 (600)
Q Consensus 101 ~~---~~~~~l~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~-- 175 (600)
+. ..+--|+-++.--.+....|+.|+++++.+|+.-....+....... -+++-++.+..+.
T Consensus 90 lq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsELErsQ~~~~~~~~sl~--------------~~stpqk~f~~p~tp 155 (307)
T PF10481_consen 90 LQVKESQVNFLEGQLNSCKKQIEKLEQELKRCKSELERSQQAASSGDVSLN--------------PCSTPQKSFATPLTP 155 (307)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccc--------------ccCCchhhccCCCCh
Confidence 42 3444556666666667777777777777776432222221111111 2455566665532
Q ss_pred h--hhHHHHHHHHHHhHhHHHhhhhhHHHHHH
Q 007520 176 Q--LYEKKIAELNKKLEDEHACFEGAVEQLDM 205 (600)
Q Consensus 176 ~--~~~~~~~~l~~~l~~e~~~~~~~~~~~~~ 205 (600)
. ...++..+|+...-.|-.-++..+.++.+
T Consensus 156 ~q~~~~sk~e~L~ekynkeveerkrle~e~k~ 187 (307)
T PF10481_consen 156 SQYYSDSKYEELQEKYNKEVEERKRLEAEVKA 187 (307)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 1 22467778887777776666666666666
No 152
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=95.30 E-value=1.5 Score=44.31 Aligned_cols=178 Identities=12% Similarity=0.081 Sum_probs=112.9
Q ss_pred HHHHHHHHH-HhhCCcchHHHHHHcCCHHHHHHHHcc----CCCHHHHHHHHHHHHHhhcC--CccHHHHHHhCchhhhH
Q 007520 364 QIHAVKVVA-NLAAEDINQEKIVEEGGLDALLLLLRT----SQNTTILRVASGAIANLAMN--EMNQGLIMSRGGGQLLA 436 (600)
Q Consensus 364 r~~Aa~aL~-nLa~~~~~~~~iv~~G~I~~Lv~lL~~----~~~~~v~~~Al~aL~NLa~~--~~~r~~I~~~G~I~~Lv 436 (600)
|..-+-+|. -++++++.+..|+.+-.--.|-.+|.. .+.+-++-.++|++..|..+ .+....+...++||..+
T Consensus 95 RVcnaL~LlQcvASHpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCL 174 (293)
T KOG3036|consen 95 RVCNALALLQCVASHPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCL 174 (293)
T ss_pred hHHHHHHHHHHHhcCcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHH
Confidence 433333444 466699999999998665555566643 35567888899999999987 44566777889999999
Q ss_pred hhhccCCCHHHHHHHHHHHHHHhCCchhHHHHHH----cChHHH-----HHHHHcCCCHHHHHHHHHHHHHhhcCCchhh
Q 007520 437 KTASKTDDPQTLRMVAGALANLCGNEKLHTMLEE----DGAIKA-----LLAMVRSGNIDVIAQVARGLANFAKCESRAI 507 (600)
Q Consensus 437 ~lL~~~~~~~v~~~Aa~aL~nLa~~~e~r~~i~~----~G~i~~-----Lv~lL~s~~~~v~~~A~~aL~nLa~~~~~~~ 507 (600)
..+.. ++.....-|+.++.-+-.++.+-..+.. --+|.. +.++...+++.+..++.++..+|+ ++|++
T Consensus 175 rime~-GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLs-dnpra- 251 (293)
T KOG3036|consen 175 RIMES-GSELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLS-DNPRA- 251 (293)
T ss_pred HHHhc-ccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc-CCHHH-
Confidence 99954 6656666677788877777665444432 122222 334446789999999999999998 55543
Q ss_pred hhcchhhHHHHHh---CCcHHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 007520 508 VQGQRKGRSHLME---DSALEWLIANSKTNSASTRRHVELALCHLAQ 551 (600)
Q Consensus 508 ~q~~~~~r~~l~e---~g~l~~Lv~Ll~s~~~~v~~~Aa~aL~nLa~ 551 (600)
|..+.. ++.-.--...+-.+|+..+..-...+-|++.
T Consensus 252 -------r~aL~~clPd~Lrd~tfs~~l~~D~~~k~~l~~ll~~l~~ 291 (293)
T KOG3036|consen 252 -------RAALRSCLPDQLRDGTFSLLLKDDPETKQWLQQLLKNLCT 291 (293)
T ss_pred -------HHHHHhhCcchhccchHHHHHhcChhHHHHHHHHHHHhcc
Confidence 333322 1111111122333455666666666666543
No 153
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=95.28 E-value=1.6 Score=46.53 Aligned_cols=197 Identities=14% Similarity=0.086 Sum_probs=139.0
Q ss_pred HHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcC-CccHH-HHHH--hCchhh-hHhhhccCCCHHHHHHHHHHHHH
Q 007520 383 KIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMN-EMNQG-LIMS--RGGGQL-LAKTASKTDDPQTLRMVAGALAN 457 (600)
Q Consensus 383 ~iv~~G~I~~Lv~lL~~~~~~~v~~~Al~aL~NLa~~-~~~r~-~I~~--~G~I~~-Lv~lL~~~~~~~v~~~Aa~aL~n 457 (600)
.+...|.+..|+..|. .-+-+.+..++.+..++... .+.+. ..++ ..-.|. |..++...++|++.-.+...|+.
T Consensus 71 Ei~~~dll~~Li~~L~-~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~dial~~g~mlRe 149 (335)
T PF08569_consen 71 EIYRSDLLYLLIRNLP-KLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENPDIALNCGDMLRE 149 (335)
T ss_dssp HHHHHTHHHHHHHTGG-GS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGSTTTHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHhh-hCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCccccchHHHHHHH
Confidence 4556678888888887 45677888899999999876 33332 1221 112233 33334444567777788889999
Q ss_pred HhCCchhHHHHHHcChHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchhhhhcchhhHHHHHh---CCcHHHHHHhhcCC
Q 007520 458 LCGNEKLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLME---DSALEWLIANSKTN 534 (600)
Q Consensus 458 La~~~e~r~~i~~~G~i~~Lv~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~q~~~~~r~~l~e---~g~l~~Lv~Ll~s~ 534 (600)
.+..+.....+.....+-.++..+..++-++...|..++.-+-... +..-..+.. .........++.++
T Consensus 150 c~k~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~h--------k~~~a~fl~~n~d~ff~~~~~Ll~s~ 221 (335)
T PF08569_consen 150 CIKHESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRH--------KKLVAEFLSNNYDRFFQKYNKLLESS 221 (335)
T ss_dssp HTTSHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSS--------HHHHHHHHHHTHHHHHHHHHHHCT-S
T ss_pred HHhhHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhcc--------HHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 9999999999999999999999999999999999999999875443 222222333 24566777899999
Q ss_pred CHHHHHHHHHHHHHhhcCchhHHHHH----HcccHHHHHHhhhcCChHHHHHHHHHHHh
Q 007520 535 SASTRRHVELALCHLAQNEDNARDFI----SRGGAKELVQISIESSREDIRNLAKKTMK 589 (600)
Q Consensus 535 ~~~v~~~Aa~aL~nLa~~~~~~~~lv----~~G~l~~Lv~ll~~~~~~~ir~~A~~~L~ 589 (600)
+--+++.+...|..|-.+..+...|. +..-+..++.++++.+ ..|+-.|.++.+
T Consensus 222 NYvtkrqslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~s-k~Iq~eAFhvFK 279 (335)
T PF08569_consen 222 NYVTKRQSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKS-KNIQFEAFHVFK 279 (335)
T ss_dssp SHHHHHHHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S--HHHHHHHHHHHH
T ss_pred CeEeehhhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcc-hhhhHHHHHHHH
Confidence 99999999999999998888766655 3557777888888755 557777766553
No 154
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=95.27 E-value=0.36 Score=56.40 Aligned_cols=257 Identities=16% Similarity=0.124 Sum_probs=130.8
Q ss_pred HHhcccCCCCccccchHHHHhh--cCchhHHH--HHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhC-CcchH-HHHHH
Q 007520 313 KGSSRFGAPMSLQKSNPSRELS--GQRATIAK--ICDEVGLPKILQLLTSEDPDVQIHAVKVVANLAA-EDINQ-EKIVE 386 (600)
Q Consensus 313 ~Lv~~L~s~~~~~r~~a~~~L~--~~~~~~~~--i~e~GgV~~Lv~LL~s~~~~vr~~Aa~aL~nLa~-~~~~~-~~iv~ 386 (600)
.|+..+.+.....|..|...|. .+.+.+.- =-+...+..|+.+|...+.+|+..|+++|+-|+. -+..+ ..+
T Consensus 9 ~LlekmtssDKDfRfMAtsDLm~eLqkdsi~Ld~dSe~kvv~~lLklL~D~ngEVQnlAVKClg~lvsKvke~~le~~-- 86 (1233)
T KOG1824|consen 9 NLLEKMTSSDKDFRFMATSDLMTELQKDSIKLDDDSERKVVKMLLKLLEDKNGEVQNLAVKCLGPLVSKVKEDQLETI-- 86 (1233)
T ss_pred HHHHHccCCCcchhhhhHHHHHHHHHhhhhhccccchhHHHHHHHHHHhccCcHHHHHHHHHHHHHHhhchHHHHHHH--
Confidence 5566666667777777776522 13322110 0122347778899999999999999999999885 33332 222
Q ss_pred cCCHHHHHHHHccCCCHHHHHH-HHHHHHHhhcCCccHHHHHHhCch----hhhHhhhccC-CCHHHHHHHHHHHHHHh-
Q 007520 387 EGGLDALLLLLRTSQNTTILRV-ASGAIANLAMNEMNQGLIMSRGGG----QLLAKTASKT-DDPQTLRMVAGALANLC- 459 (600)
Q Consensus 387 ~G~I~~Lv~lL~~~~~~~v~~~-Al~aL~NLa~~~~~r~~I~~~G~I----~~Lv~lL~~~-~~~~v~~~Aa~aL~nLa- 459 (600)
+..|+.-+-++ ....+.. +++....++.-++.-.......+. |.+...+... +...++..++..++.+-
T Consensus 87 ---ve~L~~~~~s~-keq~rdissi~Lktvi~nl~P~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~ls 162 (1233)
T KOG1824|consen 87 ---VENLCSNMLSG-KEQLRDISSIGLKTVIANLPPSSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLS 162 (1233)
T ss_pred ---HHHHhhhhccc-hhhhccHHHHHHHHHHhcCCCccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHH
Confidence 23333322212 2223333 333333333333322222222233 3333333222 23345556665555442
Q ss_pred CCchhHHHHHHcChHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchhhhhcchhhHHHHHhCCcHHHHHHhhcC-CCHHH
Q 007520 460 GNEKLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSKT-NSAST 538 (600)
Q Consensus 460 ~~~e~r~~i~~~G~i~~Lv~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~q~~~~~r~~l~e~g~l~~Lv~Ll~s-~~~~v 538 (600)
...+.-.. ...+.+..++.-+.+....|+..|+.+|+.|+...++. .+ .+.+..|+.-+.. ..+..
T Consensus 163 r~g~ll~~-fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~~~----------ly--~~li~~Ll~~L~~~~q~~~ 229 (1233)
T KOG1824|consen 163 RFGTLLPN-FHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCNRD----------LY--VELIEHLLKGLSNRTQMSA 229 (1233)
T ss_pred hhcccCcc-hHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcCHH----------HH--HHHHHHHHhccCCCCchHH
Confidence 11111111 12345566666677888999999999999998765431 11 2466666664443 44444
Q ss_pred HHHHHHHHHHhhcCchhHHHHHHcccHHHHHHhhhc--CChHHHHHHHHHHH
Q 007520 539 RRHVELALCHLAQNEDNARDFISRGGAKELVQISIE--SSREDIRNLAKKTM 588 (600)
Q Consensus 539 ~~~Aa~aL~nLa~~~~~~~~lv~~G~l~~Lv~ll~~--~~~~~ir~~A~~~L 588 (600)
.+.-..+|..++...+.+..---...++.+.+.... .+.++.|+...++|
T Consensus 230 ~rt~Iq~l~~i~r~ag~r~~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQal 281 (1233)
T KOG1824|consen 230 TRTYIQCLAAICRQAGHRFGSHLDKIVPLVADYCNKIEEDDDELREYCLQAL 281 (1233)
T ss_pred HHHHHHHHHHHHHHhcchhhcccchhhHHHHHHhcccccCcHHHHHHHHHHH
Confidence 555556666665544432222222344555554421 22334555554433
No 155
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=95.27 E-value=0.0048 Score=73.45 Aligned_cols=160 Identities=18% Similarity=0.226 Sum_probs=0.0
Q ss_pred HHHHHhhhHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHhhhhhhhhhhhhhHHhhhhhhhhhhhHHHHHHHHHHhHhHH
Q 007520 114 FLEKENAHLELEVEKILGELNHQKDQNNLKREKIVQLEISLKNSKQYEMENSTYQKALADTTQLYEKKIAELNKKLEDEH 193 (600)
Q Consensus 114 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~l~~~l~~e~ 193 (600)
.+...+.+|..|+.+|...+....+..+.......+|+..|...+..-.+.+.....|.......+.++..|...+++|.
T Consensus 205 el~~~k~kL~~E~~eL~~qLee~e~~~~~l~r~k~~L~~qLeelk~~leeEtr~k~~L~~~l~~le~e~~~L~eqleeE~ 284 (859)
T PF01576_consen 205 ELTEQKAKLQSENSELTRQLEEAESQLSQLQREKSSLESQLEELKRQLEEETRAKQALEKQLRQLEHELEQLREQLEEEE 284 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHhhhhhhhHHHHHHHHHHHHHHHHHHhhhh
Confidence 44555666666666666666666666667777777888888888877777888888888888888888888988888887
Q ss_pred HhhhhhHHHHHHHHHHHhhhhhcccc-hhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHh
Q 007520 194 ACFEGAVEQLDMVKKLLSDYQNSNQG-QKE-VHELCVKLKETRQLHESAVYEVQTLKSEYKNLLEEKETMSDELQAARQR 271 (600)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~q~~~~~-~~e-~~~l~~~~~d~~~~~e~~~~el~~l~~~~~~l~~~~~~~~~el~~~~~~ 271 (600)
......+.++..++.-+.+....... ... ...+++.-..+...+..+...+.......+.+.+....+..|+.++...
T Consensus 285 e~k~~l~~qlsk~~~El~~~k~K~e~e~~~~~EelEeaKKkL~~~L~el~e~le~~~~~~~~LeK~k~rL~~EleDl~~e 364 (859)
T PF01576_consen 285 EAKSELERQLSKLNAELEQWKKKYEEEAEQRTEELEEAKKKLERKLQELQEQLEEANAKVSSLEKTKKRLQGELEDLTSE 364 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77666666666655555544332211 111 1223333333333333333333335555556666666666666655544
Q ss_pred hh
Q 007520 272 LL 273 (600)
Q Consensus 272 l~ 273 (600)
+.
T Consensus 365 Le 366 (859)
T PF01576_consen 365 LE 366 (859)
T ss_dssp --
T ss_pred HH
Confidence 43
No 156
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=95.26 E-value=0.67 Score=49.26 Aligned_cols=202 Identities=17% Similarity=0.134 Sum_probs=137.0
Q ss_pred HHHHHHHHccCCCHHHHHHHHHHHHHhhc-C-CccHHHHHHh--CchhhhHhhhccC----CC--------HHHHHHHHH
Q 007520 390 LDALLLLLRTSQNTTILRVASGAIANLAM-N-EMNQGLIMSR--GGGQLLAKTASKT----DD--------PQTLRMVAG 453 (600)
Q Consensus 390 I~~Lv~lL~~~~~~~v~~~Al~aL~NLa~-~-~~~r~~I~~~--G~I~~Lv~lL~~~----~~--------~~v~~~Aa~ 453 (600)
++.+...|. +....+...++..|..++. + ......+... -..+.+..++... .+ +.++...+.
T Consensus 58 ~k~lyr~L~-~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~ 136 (330)
T PF11707_consen 58 LKLLYRSLS-SSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIR 136 (330)
T ss_pred HHHHHHHhC-cCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHH
Confidence 666677777 4446677789999999988 4 3555556552 1233444444211 11 277777777
Q ss_pred -HHHHHh-CCchhHHHHHHc-ChHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchhhhhcchhhHHHHHhCCcHHHHHHh
Q 007520 454 -ALANLC-GNEKLHTMLEED-GAIKALLAMVRSGNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIAN 530 (600)
Q Consensus 454 -aL~nLa-~~~e~r~~i~~~-G~i~~Lv~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~q~~~~~r~~l~e~g~l~~Lv~L 530 (600)
+|..|. +++..+..+... +.+..++.-|..+++.+....+.+|..=...++.. . +..|..+.....+..|+.+
T Consensus 137 F~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v-~---r~~K~~~fn~~~L~~l~~L 212 (330)
T PF11707_consen 137 FWLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSV-S---RSTKCKLFNEWTLSQLASL 212 (330)
T ss_pred HHHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCC-C---hhhhhhhcCHHHHHHHHHH
Confidence 555554 566777777654 56777888888889999999999998654454321 1 3456667778899999998
Q ss_pred hcCCCH----HHHHHHHHHHHHhhcCchhHHH------------------------HHHcccHHHHHHhhhcCChHHHHH
Q 007520 531 SKTNSA----STRRHVELALCHLAQNEDNARD------------------------FISRGGAKELVQISIESSREDIRN 582 (600)
Q Consensus 531 l~s~~~----~v~~~Aa~aL~nLa~~~~~~~~------------------------lv~~G~l~~Lv~ll~~~~~~~ir~ 582 (600)
....++ .+...+-..|..+|+++..=-- -+..+.+-.|+..++.......++
T Consensus 213 y~~~~~~~~~~~~~~vh~fL~~lcT~p~~Gv~f~d~~~~~~~~~~~~~~~~~~~~~~~~Nk~L~~ll~~lkp~e~~~q~~ 292 (330)
T PF11707_consen 213 YSRDGEDEKSSVADLVHEFLLALCTDPKHGVCFPDNGWYPRESDSGVPVTINNKSFKINNKLLLNLLKKLKPWEDDRQQE 292 (330)
T ss_pred hcccCCcccchHHHHHHHHHHHHhcCCCcccccCCCCcCcCcccccccccccCCCCCcccHHHHHHHHHCCCCccHHHHH
Confidence 888777 8999999999999876652100 011344555555565555567889
Q ss_pred HHHHHHhcCccccc
Q 007520 583 LAKKTMKSNPRLQA 596 (600)
Q Consensus 583 ~A~~~L~~~p~~~~ 596 (600)
.+..+++.+|++-+
T Consensus 293 Lvl~Il~~~PeLva 306 (330)
T PF11707_consen 293 LVLKILKACPELVA 306 (330)
T ss_pred HHHHHHHHChHHHH
Confidence 99999999998754
No 157
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=95.25 E-value=8.9 Score=45.50 Aligned_cols=32 Identities=22% Similarity=0.248 Sum_probs=16.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007520 221 KEVHELCVKLKETRQLHESAVYEVQTLKSEYK 252 (600)
Q Consensus 221 ~e~~~l~~~~~d~~~~~e~~~~el~~l~~~~~ 252 (600)
.|...++..+...-.++.++...+.+.+.++.
T Consensus 418 ~e~~~~e~~l~~~~e~i~~l~~si~e~~~r~~ 449 (1200)
T KOG0964|consen 418 KEIEDLESELKEKLEEIKELESSINETKGRME 449 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHH
Confidence 35555555555555555555555555554443
No 158
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=95.24 E-value=1.1 Score=53.98 Aligned_cols=223 Identities=18% Similarity=0.146 Sum_probs=130.2
Q ss_pred hHHHhcccCCC-CccccchHHHH---hhc--CchhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhC-----Ccc
Q 007520 311 ISKGSSRFGAP-MSLQKSNPSRE---LSG--QRATIAKICDEVGLPKILQLLTSEDPDVQIHAVKVVANLAA-----EDI 379 (600)
Q Consensus 311 i~~Lv~~L~s~-~~~~r~~a~~~---L~~--~~~~~~~i~e~GgV~~Lv~LL~s~~~~vr~~Aa~aL~nLa~-----~~~ 379 (600)
++.+.+.++.- ....|..|+.- ++. +++.+- ...+|-++.++....+.||..|+.+|..+.. .+.
T Consensus 424 vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~de~~L----DRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~ 499 (1431)
T KOG1240|consen 424 VSVLTSCIRALKTIQTKLAALELLQELSTYIDDEVKL----DRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPS 499 (1431)
T ss_pred HHHHHHHHHhhhcchhHHHHHHHHHHHhhhcchHHHH----hhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcc
Confidence 34444555443 34555555543 332 222221 3347888899999999999999998886542 233
Q ss_pred hHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhc------------------C-Ccc-----------HHHHHHh
Q 007520 380 NQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAM------------------N-EMN-----------QGLIMSR 429 (600)
Q Consensus 380 ~~~~iv~~G~I~~Lv~lL~~~~~~~v~~~Al~aL~NLa~------------------~-~~~-----------r~~I~~~ 429 (600)
+...+.+. .+|.|-.++.++...-++..-+.+|..||. + +.+ ..++..
T Consensus 500 daniF~eY-lfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~- 577 (1431)
T KOG1240|consen 500 DANIFPEY-LFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHH- 577 (1431)
T ss_pred cchhhHhh-hhhhhHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHH-
Confidence 45555665 677777777743333333333333333332 1 111 111111
Q ss_pred Cchhh-hHhhhccCCCHHHHHHHHHHHHHHh----------------------CCchhHHHHHH---------------c
Q 007520 430 GGGQL-LAKTASKTDDPQTLRMVAGALANLC----------------------GNEKLHTMLEE---------------D 471 (600)
Q Consensus 430 G~I~~-Lv~lL~~~~~~~v~~~Aa~aL~nLa----------------------~~~e~r~~i~~---------------~ 471 (600)
+|.. .+.+|.+ +++-|++..+..|+-|| .+..+|..|.+ .
T Consensus 578 -~V~~~v~sLlsd-~~~~Vkr~Lle~i~~LC~FFGk~ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~rs~se 655 (1431)
T KOG1240|consen 578 -TVEQMVSSLLSD-SPPIVKRALLESIIPLCVFFGKEKSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWRSVSE 655 (1431)
T ss_pred -HHHHHHHHHHcC-CchHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHhcCccHHHHHHHHhhccceEEEEeeeeHHH
Confidence 2333 3445533 44456666566777777 12334555433 4
Q ss_pred ChHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchhhhhcchhhHHHHHhCCcHHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 007520 472 GAIKALLAMVRSGNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSKTNSASTRRHVELALCHLAQ 551 (600)
Q Consensus 472 G~i~~Lv~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~q~~~~~r~~l~e~g~l~~Lv~Ll~s~~~~v~~~Aa~aL~nLa~ 551 (600)
+.+|.|.+-|.++.+.|...|+++|..|+...- --+..+ ...++.+..++.+++..||+.++.++...+.
T Consensus 656 yllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~l--------l~K~~v--~~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~ 725 (1431)
T KOG1240|consen 656 YLLPLLQQGLTDGEEAVIVSALGSLSILIKLGL--------LRKPAV--KDILQDVLPLLCHPNLWIRRAVLGIIAAIAR 725 (1431)
T ss_pred HHHHHHHHhccCcchhhHHHHHHHHHHHHHhcc--------cchHHH--HHHHHhhhhheeCchHHHHHHHHHHHHHHHh
Confidence 466777777888999999999999999986530 001111 1244555667888999999999999988754
No 159
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=95.22 E-value=0.29 Score=55.78 Aligned_cols=234 Identities=12% Similarity=0.080 Sum_probs=131.9
Q ss_pred cccCchHHHhcccCCCCccccchHHHH---hhcCchhHHHHHhcCCHH-HHHHhhCCCCHHHHHHHHHHHHHhhCC-cch
Q 007520 306 YTKDYISKGSSRFGAPMSLQKSNPSRE---LSGQRATIAKICDEVGLP-KILQLLTSEDPDVQIHAVKVVANLAAE-DIN 380 (600)
Q Consensus 306 ~~~g~i~~Lv~~L~s~~~~~r~~a~~~---L~~~~~~~~~i~e~GgV~-~Lv~LL~s~~~~vr~~Aa~aL~nLa~~-~~~ 380 (600)
+-...++.++..|++.++.+|.+++.- ++.--......-..|-+- .|...|..+.+++.-..+.+|..+... .-.
T Consensus 796 ylpqi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvvLyEylgeeypEvLgsILgAikaI~nvigm~ 875 (1172)
T KOG0213|consen 796 YLPQICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVVLYEYLGEEYPEVLGSILGAIKAIVNVIGMT 875 (1172)
T ss_pred chHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHHHHhcCcccHHHHHHHHHHHHHHHHhcccc
Confidence 334445555566667777777666643 211111111111112121 234677788888876666665554431 111
Q ss_pred HHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcC-Ccc---HHHHHHhCchhhhHhhhccCCCHHHHHHHHHHHH
Q 007520 381 QEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMN-EMN---QGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALA 456 (600)
Q Consensus 381 ~~~iv~~G~I~~Lv~lL~~~~~~~v~~~Al~aL~NLa~~-~~~---r~~I~~~G~I~~Lv~lL~~~~~~~v~~~Aa~aL~ 456 (600)
+..---.|.+|.|..+|+ +....++.++...+..+|.. ++. |.-+.- ---|+.+|.. -.-.++++|...++
T Consensus 876 km~pPi~dllPrltPILk-nrheKVqen~IdLvg~IadrgpE~v~aREWMRI---cfeLlelLka-hkK~iRRaa~nTfG 950 (1172)
T KOG0213|consen 876 KMTPPIKDLLPRLTPILK-NRHEKVQENCIDLVGTIADRGPEYVSAREWMRI---CFELLELLKA-HKKEIRRAAVNTFG 950 (1172)
T ss_pred ccCCChhhhcccchHhhh-hhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHH---HHHHHHHHHH-HHHHHHHHHHhhhh
Confidence 111122357899999998 66788999999999999877 331 111111 1125566643 34467777776666
Q ss_pred HHh---CCchhHHH---------------------HHH--cC---hHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchhh
Q 007520 457 NLC---GNEKLHTM---------------------LEE--DG---AIKALLAMVRSGNIDVIAQVARGLANFAKCESRAI 507 (600)
Q Consensus 457 nLa---~~~e~r~~---------------------i~~--~G---~i~~Lv~lL~s~~~~v~~~A~~aL~nLa~~~~~~~ 507 (600)
.++ +..+.-.. |+. .| ++|+|+.=-+.++..|+..++.+|+.+=.+-
T Consensus 951 ~IakaIGPqdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~pFtVLPalmneYrtPe~nVQnGVLkalsf~Feyi---- 1026 (1172)
T KOG0213|consen 951 YIAKAIGPQDVLATLLNNLKVQERQNRVCTTVAIAIVAETCGPFTVLPALMNEYRTPEANVQNGVLKALSFMFEYI---- 1026 (1172)
T ss_pred HHHHhcCHHHHHHHHHhcchHHHHHhchhhhhhhhhhhhhcCchhhhHHHHhhccCchhHHHHhHHHHHHHHHHHH----
Confidence 665 11111111 111 12 3333333335788889999999988875431
Q ss_pred hhcchhhHHHHHhCCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCc
Q 007520 508 VQGQRKGRSHLMEDSALEWLIANSKTNSASTRRHVELALCHLAQNE 553 (600)
Q Consensus 508 ~q~~~~~r~~l~e~g~l~~Lv~Ll~s~~~~v~~~Aa~aL~nLa~~~ 553 (600)
++.++.-+ ....|.|-..+.+.|..-+..|+.++.+|+.+.
T Consensus 1027 ---gemskdYi--yav~PlleDAlmDrD~vhRqta~~~I~Hl~Lg~ 1067 (1172)
T KOG0213|consen 1027 ---GEMSKDYI--YAVTPLLEDALMDRDLVHRQTAMNVIKHLALGV 1067 (1172)
T ss_pred ---HHHhhhHH--HHhhHHHHHhhccccHHHHHHHHHHHHHHhcCC
Confidence 12233333 345667777788888888999999999998764
No 160
>PHA02562 46 endonuclease subunit; Provisional
Probab=95.20 E-value=6.2 Score=44.81 Aligned_cols=27 Identities=19% Similarity=0.250 Sum_probs=11.2
Q ss_pred HHHHHHHHhHHHHHHHhhhHHHHHHHH
Q 007520 103 ESMRNLVTRSEFLEKENAHLELEVEKI 129 (600)
Q Consensus 103 ~~~~~l~~~~~~~~~e~~~~~~~~~~~ 129 (600)
+.+..+..+.+.+..+...++.++.++
T Consensus 220 ~e~~~l~~~~~~l~~~l~~l~~~i~~l 246 (562)
T PHA02562 220 NKYDELVEEAKTIKAEIEELTDELLNL 246 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444443
No 161
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=95.18 E-value=5.8 Score=45.70 Aligned_cols=64 Identities=23% Similarity=0.243 Sum_probs=33.9
Q ss_pred hHhHHHhhhhhHHHHHHHHHHHhhhhhcccchh----------------------hHHHHHHHHHHHHHHHHHHHHHHHH
Q 007520 189 LEDEHACFEGAVEQLDMVKKLLSDYQNSNQGQK----------------------EVHELCVKLKETRQLHESAVYEVQT 246 (600)
Q Consensus 189 l~~e~~~~~~~~~~~~~~~~~~~~~q~~~~~~~----------------------e~~~l~~~~~d~~~~~e~~~~el~~ 246 (600)
++++.+....|-.+...||..|.++|..+-..+ -+..++..+..+...++.+..|+..
T Consensus 148 lqsdk~t~SRAlsQN~eLK~QL~Elq~~Fv~ltne~~elt~~lq~Eq~~~keL~~kl~~l~~~l~~~~e~le~K~qE~~~ 227 (617)
T PF15070_consen 148 LQSDKATASRALSQNRELKEQLAELQDAFVKLTNENMELTSALQSEQHVKKELQKKLGELQEKLHNLKEKLELKSQEAQS 227 (617)
T ss_pred hcccchHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 344444445555555557777766665432211 1244555555566666666666666
Q ss_pred HHHHHH
Q 007520 247 LKSEYK 252 (600)
Q Consensus 247 l~~~~~ 252 (600)
+..+..
T Consensus 228 Lq~q~d 233 (617)
T PF15070_consen 228 LQEQRD 233 (617)
T ss_pred HHHHHH
Confidence 654433
No 162
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=95.16 E-value=7.6 Score=46.51 Aligned_cols=218 Identities=14% Similarity=0.179 Sum_probs=119.5
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHhhhHHHHHHHHH
Q 007520 51 LRECQISYDEAKDNLVTQVELLTAKIEMQQKLRENDKYEFEKQLRESQISYDESMRNLVTRSEFLEKENAHLELEVEKIL 130 (600)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~e~~~~~~~~~~~~ 130 (600)
+.+++.++.-.|..+ ..++.+++..- .+...+++|+... ...+...--++-.+.++..+.+.+|++|.
T Consensus 678 ~~~v~~~i~~le~~~----~~~~~~~~~~k----~~l~~~~~El~~~----~~~i~~~~p~i~~i~r~l~~~e~~~~~L~ 745 (1141)
T KOG0018|consen 678 VSSVESKIHGLEMRL----KYSKLDLEQLK----RSLEQNELELQRT----ESEIDEFGPEISEIKRKLQNREGEMKELE 745 (1141)
T ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHH----HHHHHHHHHHHHH----HHHHHhhCchHHHHHHHHHHHHHHHHHHH
Confidence 335566666666532 23333333222 1223444444422 22333444455577788888888888888
Q ss_pred hhhhhhhhhhhhHHHHHHHHHHhhhhhhhhhhhhhHHhhhhhhhhhhhHHHHHHHHHHhHhHHHhhhhhHHHHHHHHHHH
Q 007520 131 GELNHQKDQNNLKREKIVQLEISLKNSKQYEMENSTYQKALADTTQLYEKKIAELNKKLEDEHACFEGAVEQLDMVKKLL 210 (600)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~~~~~~~~ 210 (600)
..+|.--+. ...+=+. .+++. |.+++ |-.-+..-+..+.+|+.|++-|..+|+=|.. ..+...+..+++-+
T Consensus 746 ~~~n~ved~--if~~f~~--~igv~-ir~Ye--e~~~~~~~a~k~~ef~~q~~~l~~~l~fe~~--~d~~~~ve~~~~~v 816 (1141)
T KOG0018|consen 746 ERMNKVEDR--IFKGFCR--RIGVR-IREYE--ERELQQEFAKKRLEFENQKAKLENQLDFEKQ--KDTQRRVERWERSV 816 (1141)
T ss_pred HHHHHHHHH--HHHHhhh--hcCee-eehHH--HHHHHHHHHHHHHHHHHHHHHHhhhhhheec--ccHHHHHHHHHHHH
Confidence 877654332 1122121 23444 55554 2223777888999999999999999998866 67777777777777
Q ss_pred hhhhhcccchh-hHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhhchHHHHHHHHhhhHHHHhhhhHHHHHHH
Q 007520 211 SDYQNSNQGQK-EVHELCVKLKETRQLHESAV-YEVQTLKSEYKNLLEEKETMSDELQAARQRLLVEEKQRKAIEYELVK 288 (600)
Q Consensus 211 ~~~q~~~~~~~-e~~~l~~~~~d~~~~~e~~~-~el~~l~~~~~~l~~~~~~~~~el~~~~~~l~~e~~~~~~le~~~~~ 288 (600)
++.|.....-. .-.++...+... .+.+... +...+....+.+.++....+..+++++.+-+..-...++++.++.-.
T Consensus 817 ~~~~~~~~~~~~~e~~~~k~i~e~-~~~e~k~k~~~~~~~~e~~e~~k~~~~~~~~~tkl~~~i~~~es~ie~~~~er~~ 895 (1141)
T KOG0018|consen 817 EDLEKEIEGLKKDEEAAEKIIAEI-EELEKKNKSKFEKKEDEINEVKKILRRLVKELTKLDKEITSIESKIERKESERHN 895 (1141)
T ss_pred HHHHHhHHhhHHHHHHHHHHHhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHH
Confidence 76655443222 222333333332 1111100 00001222233456666677777777777776666667777766555
Q ss_pred Hh
Q 007520 289 LK 290 (600)
Q Consensus 289 l~ 290 (600)
+.
T Consensus 896 lL 897 (1141)
T KOG0018|consen 896 LL 897 (1141)
T ss_pred HH
Confidence 44
No 163
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=95.11 E-value=0.093 Score=58.47 Aligned_cols=196 Identities=19% Similarity=0.230 Sum_probs=123.4
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHhhCC---cchHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcCCccH--
Q 007520 349 LPKILQLLTSEDPDVQIHAVKVVANLAAE---DINQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMNEMNQ-- 423 (600)
Q Consensus 349 V~~Lv~LL~s~~~~vr~~Aa~aL~nLa~~---~~~~~~iv~~G~I~~Lv~lL~~~~~~~v~~~Al~aL~NLa~~~~~r-- 423 (600)
|..++.+|++..+.+|.+|+...+.|+.- -..-..+...|.| |..-|. ...+++....+.|++.+......+
T Consensus 606 vStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~i--LyE~lg-e~ypEvLgsil~Ai~~I~sv~~~~~m 682 (975)
T COG5181 606 VSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGNI--LYENLG-EDYPEVLGSILKAICSIYSVHRFRSM 682 (975)
T ss_pred HHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHH--HHHhcC-cccHHHHHHHHHHHHHHhhhhccccc
Confidence 45556788899999999999998887741 1112233344433 345555 567888888888888776542222
Q ss_pred -HHHHHhCchhhhHhhhccCCCHHHHHHHHHHHHHHhCC-ch---hHHHHHHcChHHHHHHHHcCCCHHHHHHHHHHHHH
Q 007520 424 -GLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLCGN-EK---LHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLAN 498 (600)
Q Consensus 424 -~~I~~~G~I~~Lv~lL~~~~~~~v~~~Aa~aL~nLa~~-~e---~r~~i~~~G~i~~Lv~lL~s~~~~v~~~A~~aL~n 498 (600)
..| .|.+|.|..+|.+ .+..+..+.+..+.-+|.+ ++ .+.-+. ..--|+.+|.+.+..++.+|..+++.
T Consensus 683 qpPi--~~ilP~ltPILrn-kh~Kv~~nti~lvg~I~~~~peyi~~rEWMR---IcfeLvd~Lks~nKeiRR~A~~tfG~ 756 (975)
T COG5181 683 QPPI--SGILPSLTPILRN-KHQKVVANTIALVGTICMNSPEYIGVREWMR---ICFELVDSLKSWNKEIRRNATETFGC 756 (975)
T ss_pred CCch--hhccccccHhhhh-hhHHHhhhHHHHHHHHHhcCcccCCHHHHHH---HHHHHHHHHHHhhHHHHHhhhhhhhh
Confidence 222 4678999999964 6778888888888888754 32 122111 11237777889999999999999988
Q ss_pred hhcCC-chhh---------hh------cchhhHHHHHhC----CcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCc
Q 007520 499 FAKCE-SRAI---------VQ------GQRKGRSHLMED----SALEWLIANSKTNSASTRRHVELALCHLAQNE 553 (600)
Q Consensus 499 La~~~-~~~~---------~q------~~~~~r~~l~e~----g~l~~Lv~Ll~s~~~~v~~~Aa~aL~nLa~~~ 553 (600)
++..- |... .| ++..+-.++.+. .++|.|+.=-..+...||.....++|.+...-
T Consensus 757 Is~aiGPqdvL~~LlnnLkvqeRq~RvctsvaI~iVae~cgpfsVlP~lm~dY~TPe~nVQnGvLkam~fmFeyi 831 (975)
T COG5181 757 ISRAIGPQDVLDILLNNLKVQERQQRVCTSVAISIVAEYCGPFSVLPTLMSDYETPEANVQNGVLKAMCFMFEYI 831 (975)
T ss_pred HHhhcCHHHHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcCchhhHHHHHhcccCchhHHHHhHHHHHHHHHHHH
Confidence 87532 2110 00 001122223332 34455555455577889999999999887643
No 164
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.07 E-value=0.93 Score=51.74 Aligned_cols=176 Identities=14% Similarity=0.125 Sum_probs=121.9
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHhhC-Ccch-HHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcC-CccHHH
Q 007520 349 LPKILQLLTSEDPDVQIHAVKVVANLAA-EDIN-QEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMN-EMNQGL 425 (600)
Q Consensus 349 V~~Lv~LL~s~~~~vr~~Aa~aL~nLa~-~~~~-~~~iv~~G~I~~Lv~lL~~~~~~~v~~~Al~aL~NLa~~-~~~r~~ 425 (600)
.+.++.+|++.-+.+|..|+.+|+.+.- .|+. | -++|.|+.-|. ++|+.++..|..+++.||.- |.|.-.
T Consensus 146 a~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeAlr------~~FprL~EkLe-DpDp~V~SAAV~VICELArKnPknyL~ 218 (877)
T KOG1059|consen 146 ADDVFTLLNSSKPYVRKKAILLLYKVFLKYPEALR------PCFPRLVEKLE-DPDPSVVSAAVSVICELARKNPQNYLQ 218 (877)
T ss_pred HHHHHHHHhcCchHHHHHHHHHHHHHHHhhhHhHh------hhHHHHHHhcc-CCCchHHHHHHHHHHHHHhhCCccccc
Confidence 4567899999999999999999998764 4332 2 15788888888 88999999999999999975 666544
Q ss_pred HHHhCchhhhHhhhccCCCHHHHHHHHHHHHHHhCC-chhHHHHHHcChHHHHHHHHcCCCH-HHHHHHHHHHHHh--hc
Q 007520 426 IMSRGGGQLLAKTASKTDDPQTLRMVAGALANLCGN-EKLHTMLEEDGAIKALLAMVRSGNI-DVIAQVARGLANF--AK 501 (600)
Q Consensus 426 I~~~G~I~~Lv~lL~~~~~~~v~~~Aa~aL~nLa~~-~e~r~~i~~~G~i~~Lv~lL~s~~~-~v~~~A~~aL~nL--a~ 501 (600)
.-|.+..+|..+.+.=+....+...++|+-- |.... ..++++..++++... .+...|..++... ..
T Consensus 219 -----LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPRLgK-----KLieplt~li~sT~AmSLlYECvNTVVa~s~s~ 288 (877)
T KOG1059|consen 219 -----LAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLGK-----KLIEPITELMESTVAMSLLYECVNTVVAVSMSS 288 (877)
T ss_pred -----ccHHHHHHHhccCCCeehHHHHHHHhhccccCchhhh-----hhhhHHHHHHHhhHHHHHHHHHHHHheeehhcc
Confidence 3466778886655555666777777888744 44433 467788888876654 3444455444332 22
Q ss_pred CCchhhhhcchhhHHHHHhCCcHHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 007520 502 CESRAIVQGQRKGRSHLMEDSALEWLIANSKTNSASTRRHVELALCHLAQ 551 (600)
Q Consensus 502 ~~~~~~~q~~~~~r~~l~e~g~l~~Lv~Ll~s~~~~v~~~Aa~aL~nLa~ 551 (600)
+.|+ .-..+ .-+++.|-.++.+.|+.++.-++.|++.+..
T Consensus 289 g~~d--------~~asi--qLCvqKLr~fiedsDqNLKYlgLlam~KI~k 328 (877)
T KOG1059|consen 289 GMSD--------HSASI--QLCVQKLRIFIEDSDQNLKYLGLLAMSKILK 328 (877)
T ss_pred CCCC--------cHHHH--HHHHHHHhhhhhcCCccHHHHHHHHHHHHhh
Confidence 2111 10001 1267777778888899999999999988864
No 165
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=95.05 E-value=0.74 Score=46.82 Aligned_cols=179 Identities=19% Similarity=0.205 Sum_probs=96.9
Q ss_pred HHHHhcCCHHHHHHhhC--CCCHHHHHHHHHHHHHhhCCcchHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhc
Q 007520 341 AKICDEVGLPKILQLLT--SEDPDVQIHAVKVVANLAAEDINQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAM 418 (600)
Q Consensus 341 ~~i~e~GgV~~Lv~LL~--s~~~~vr~~Aa~aL~nLa~~~~~~~~iv~~G~I~~Lv~lL~~~~~~~v~~~Al~aL~NLa~ 418 (600)
.+.....+++.|+..|. +..+-+|-.|+.+|+++. .+. .++.+-+.. .++..++++.|..|+..+-+
T Consensus 61 gQ~~~~~Av~~l~~vl~desq~pmvRhEAaealga~~-~~~---------~~~~l~k~~-~dp~~~v~ETc~lAi~rle~ 129 (289)
T KOG0567|consen 61 GQMQDEDAVPVLVEVLLDESQEPMVRHEAAEALGAIG-DPE---------SLEILTKYI-KDPCKEVRETCELAIKRLEW 129 (289)
T ss_pred hhhccchhhHHHHHHhcccccchHHHHHHHHHHHhhc-chh---------hHHHHHHHh-cCCccccchHHHHHHHHHHH
Confidence 33445566888887775 455777888888888865 222 233344444 35555666666666666654
Q ss_pred CCccHH-----HHHH--------hCchhhhHhhhccCCCHHH-HHHHHHHHHHHhCCchh--------------HHH---
Q 007520 419 NEMNQG-----LIMS--------RGGGQLLAKTASKTDDPQT-LRMVAGALANLCGNEKL--------------HTM--- 467 (600)
Q Consensus 419 ~~~~r~-----~I~~--------~G~I~~Lv~lL~~~~~~~v-~~~Aa~aL~nLa~~~e~--------------r~~--- 467 (600)
....-. .... .+-|..|-..|.+...+.. +..|...|+|+-+.+.+ |..
T Consensus 130 ~~~~~~~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g~EeaI~al~~~l~~~SalfrhEvAf 209 (289)
T KOG0567|consen 130 KDIIDKIANSSPYISVDPAPPANLSSVHELRAELLDETKPLFERYRAMFYLRNIGTEEAINALIDGLADDSALFRHEVAF 209 (289)
T ss_pred hhccccccccCccccCCCCCccccccHHHHHHHHHhcchhHHHHHhhhhHhhccCcHHHHHHHHHhcccchHHHHHHHHH
Confidence 311111 1111 1112222222222222222 22333344444221111 111
Q ss_pred ----HHHcChHHHHHHHHc--CCCHHHHHHHHHHHHHhhcCCchhhhhcchhhHHHHHhCCcHHHHHHhhcCCCHHHHHH
Q 007520 468 ----LEEDGAIKALLAMVR--SGNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSKTNSASTRRH 541 (600)
Q Consensus 468 ----i~~~G~i~~Lv~lL~--s~~~~v~~~A~~aL~nLa~~~~~~~~q~~~~~r~~l~e~g~l~~Lv~Ll~s~~~~v~~~ 541 (600)
+...-.|+.|...|. ..+|-||..|+.||+.++.. .+++.|..+++++++-|+..
T Consensus 210 VfGQl~s~~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~e-------------------~~~~vL~e~~~D~~~vv~es 270 (289)
T KOG0567|consen 210 VFGQLQSPAAIPSLIKVLLDETEHPMVRHEAAEALGAIADE-------------------DCVEVLKEYLGDEERVVRES 270 (289)
T ss_pred HHhhccchhhhHHHHHHHHhhhcchHHHHHHHHHHHhhcCH-------------------HHHHHHHHHcCCcHHHHHHH
Confidence 111235666777664 56778888888888887732 36778888888888888888
Q ss_pred HHHHHHHh
Q 007520 542 VELALCHL 549 (600)
Q Consensus 542 Aa~aL~nL 549 (600)
+..+|-.+
T Consensus 271 c~valdm~ 278 (289)
T KOG0567|consen 271 CEVALDML 278 (289)
T ss_pred HHHHHHHH
Confidence 87777655
No 166
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=94.91 E-value=1.8 Score=47.45 Aligned_cols=129 Identities=22% Similarity=0.222 Sum_probs=99.2
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHhhCCcc----hHHHHHHcCCHHHHHHHHccC------CCHHHHHHHHHHHHHhhcCCc
Q 007520 352 ILQLLTSEDPDVQIHAVKVVANLAAEDI----NQEKIVEEGGLDALLLLLRTS------QNTTILRVASGAIANLAMNEM 421 (600)
Q Consensus 352 Lv~LL~s~~~~vr~~Aa~aL~nLa~~~~----~~~~iv~~G~I~~Lv~lL~~~------~~~~v~~~Al~aL~NLa~~~~ 421 (600)
+..++...+.+-+..|.-.+..+..+++ ++..+.++=|.+.+-.+|.+. ++.-.+..+...|+-+|..|+
T Consensus 16 ~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~pE 95 (698)
T KOG2611|consen 16 CLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVPE 95 (698)
T ss_pred HHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCChh
Confidence 5566677777777777777777877433 577788888888888888642 344456668888999999866
Q ss_pred c--HHHHHHhCchhhhHhhhccCCCHH------HHHHHHHHHHHHhCCchhHHHHHHcChHHHHHHHHc
Q 007520 422 N--QGLIMSRGGGQLLAKTASKTDDPQ------TLRMVAGALANLCGNEKLHTMLEEDGAIKALLAMVR 482 (600)
Q Consensus 422 ~--r~~I~~~G~I~~Lv~lL~~~~~~~------v~~~Aa~aL~nLa~~~e~r~~i~~~G~i~~Lv~lL~ 482 (600)
. ...|++ .||.|...+....+++ +...+-.+|..+++.+.+...++..|+++.+.++-.
T Consensus 96 lAsh~~~v~--~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Lia~G~~~~~~Q~y~ 162 (698)
T KOG2611|consen 96 LASHEEMVS--RIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGLMTLIASGGLRVIAQMYE 162 (698)
T ss_pred hccCHHHHH--hhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchhHHHHhcCchHHHHHHHh
Confidence 4 445555 5999999997766665 777888899999999999999999999999998754
No 167
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=94.90 E-value=0.2 Score=48.25 Aligned_cols=90 Identities=16% Similarity=0.158 Sum_probs=72.5
Q ss_pred CHHHHHHHHHHHHHHhC-CchhHHHHHHcChHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchhhhhcchhhHHHHHh-C
Q 007520 444 DPQTLRMVAGALANLCG-NEKLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLME-D 521 (600)
Q Consensus 444 ~~~v~~~Aa~aL~nLa~-~~e~r~~i~~~G~i~~Lv~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~q~~~~~r~~l~e-~ 521 (600)
+|.++..++.+++.||. .+..-. ..++.+...|.++++.||..|+.+|..|...+ ++. .
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~ve-----~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d--------------~ik~k 61 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLVE-----PYLPNLYKCLRDEDPLVRKTALLVLSHLILED--------------MIKVK 61 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHHH-----hHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcC--------------ceeeh
Confidence 47888899999999874 344333 46788999999999999999999999998654 222 3
Q ss_pred CcH-HHHHHhhcCCCHHHHHHHHHHHHHhhcC
Q 007520 522 SAL-EWLIANSKTNSASTRRHVELALCHLAQN 552 (600)
Q Consensus 522 g~l-~~Lv~Ll~s~~~~v~~~Aa~aL~nLa~~ 552 (600)
|-+ ..++..+.++++.|+..|..++..+...
T Consensus 62 ~~l~~~~l~~l~D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 62 GQLFSRILKLLVDENPEIRSLARSFFSELLKK 93 (178)
T ss_pred hhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHh
Confidence 433 7888889999999999999999999765
No 168
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=94.89 E-value=0.18 Score=55.83 Aligned_cols=114 Identities=18% Similarity=0.115 Sum_probs=91.5
Q ss_pred HHHHHHHhCCchhHHHHHHcChHHHHHHHH----------cCCCHHHHHHHHHHHHHhhcCCchhhhhcchhhHHHHHhC
Q 007520 452 AGALANLCGNEKLHTMLEEDGAIKALLAMV----------RSGNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLMED 521 (600)
Q Consensus 452 a~aL~nLa~~~e~r~~i~~~G~i~~Lv~lL----------~s~~~~v~~~A~~aL~nLa~~~~~~~~q~~~~~r~~l~e~ 521 (600)
+.+|.-|+.++.+...+....++..|+.+. ...+..+...|+++|+|+...+ +..|..+.+.
T Consensus 2 L~~LRiLsRd~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s--------~~aR~~~~~~ 73 (446)
T PF10165_consen 2 LETLRILSRDPTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLS--------PSARQIFVDL 73 (446)
T ss_pred HHHHHHHccCcccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCC--------HHHHHHHHHc
Confidence 457777888888888888888888888776 2567889999999999999876 5688889999
Q ss_pred CcHHHHHHhhcCC-----CHHHHHHHHHHHHHhhc-CchhHHHHHH-cccHHHHHHhhh
Q 007520 522 SALEWLIANSKTN-----SASTRRHVELALCHLAQ-NEDNARDFIS-RGGAKELVQISI 573 (600)
Q Consensus 522 g~l~~Lv~Ll~s~-----~~~v~~~Aa~aL~nLa~-~~~~~~~lv~-~G~l~~Lv~ll~ 573 (600)
|+.+.++..++.. +..+.......|.-++. .++.+..+++ .+++..|...+.
T Consensus 74 ~~~~~l~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~ 132 (446)
T PF10165_consen 74 GLAEKLCERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALE 132 (446)
T ss_pred CcHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHH
Confidence 9999999988876 78888888888888864 5667777775 477777766553
No 169
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=94.74 E-value=1.9 Score=51.43 Aligned_cols=223 Identities=11% Similarity=0.076 Sum_probs=135.1
Q ss_pred CCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCcchHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcCCccHHHH
Q 007520 347 VGLPKILQLLTSEDPDVQIHAVKVVANLAAEDINQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMNEMNQGLI 426 (600)
Q Consensus 347 GgV~~Lv~LL~s~~~~vr~~Aa~aL~nLa~~~~~~~~iv~~G~I~~Lv~lL~~~~~~~v~~~Al~aL~NLa~~~~~r~~I 426 (600)
+.+.-|+..|++.+..+|=.||+-++.++...+ ..+++. +|...+.++.+..+...-..++.+|+.||...-.....
T Consensus 341 ~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp--~~Lad~-vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlps~ 417 (1133)
T KOG1943|consen 341 FVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLP--PELADQ-VIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLPSL 417 (1133)
T ss_pred HHHHHHHHhccCCcchhhHHHHHHHHHHHccCc--HHHHHH-HHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcchHH
Confidence 446777788888999999999999999998333 333333 56777777776665666668999999999763322222
Q ss_pred HHhCchhhhHhhhcc-------CCCHHHHHHHHHHHHHHhCC--chhHHHHHHcChHHHHHHHHcCCCHHHHHHHHHHHH
Q 007520 427 MSRGGGQLLAKTASK-------TDDPQTLRMVAGALANLCGN--EKLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLA 497 (600)
Q Consensus 427 ~~~G~I~~Lv~lL~~-------~~~~~v~~~Aa~aL~nLa~~--~e~r~~i~~~G~i~~Lv~lL~s~~~~v~~~A~~aL~ 497 (600)
+.. ++|.++..|.. +....++.+||-++|.++.. +..-..+...=.-..|...+-+++..+|+.|..||.
T Consensus 418 l~d-VvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsAAlq 496 (1133)
T KOG1943|consen 418 LED-VVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASAALQ 496 (1133)
T ss_pred HHH-HHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHHHHH
Confidence 222 56666655532 23346788888899998733 322121222111122333445788889999999998
Q ss_pred HhhcCCchh-----h-------hhcc--h---hhHHHHHh-CCcHHHHHHh-----hcCCCHHHHHHHHHHHHHhhcCch
Q 007520 498 NFAKCESRA-----I-------VQGQ--R---KGRSHLME-DSALEWLIAN-----SKTNSASTRRHVELALCHLAQNED 554 (600)
Q Consensus 498 nLa~~~~~~-----~-------~q~~--~---~~r~~l~e-~g~l~~Lv~L-----l~s~~~~v~~~Aa~aL~nLa~~~~ 554 (600)
-....-++. . +-+. . +....+.+ .|...++++. +.+-|..+++.++++|..|+...
T Consensus 497 E~VGR~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~Ls~~~- 575 (1133)
T KOG1943|consen 497 ENVGRQGNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYALHKLSLTE- 575 (1133)
T ss_pred HHhccCCCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhh-
Confidence 887663332 0 0000 1 11122222 3444444442 44568999999999999986532
Q ss_pred hHHHHHHcccHHHHHHhhhcCC
Q 007520 555 NARDFISRGGAKELVQISIESS 576 (600)
Q Consensus 555 ~~~~lv~~G~l~~Lv~ll~~~~ 576 (600)
.+....+.+++|+....+++
T Consensus 576 --pk~~a~~~L~~lld~~ls~~ 595 (1133)
T KOG1943|consen 576 --PKYLADYVLPPLLDSTLSKD 595 (1133)
T ss_pred --HHhhcccchhhhhhhhcCCC
Confidence 22344456666666655544
No 170
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=94.69 E-value=0.23 Score=43.14 Aligned_cols=89 Identities=12% Similarity=0.045 Sum_probs=59.8
Q ss_pred HHHHHHHHHHhhcC-CccHHHHHHhCchhhhHhhhccCCCHHHHHHHHHHHHHHhCCchhHHHHHH--cChHHHHHHHHc
Q 007520 406 LRVASGAIANLAMN-EMNQGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLCGNEKLHTMLEE--DGAIKALLAMVR 482 (600)
Q Consensus 406 ~~~Al~aL~NLa~~-~~~r~~I~~~G~I~~Lv~lL~~~~~~~v~~~Aa~aL~nLa~~~e~r~~i~~--~G~i~~Lv~lL~ 482 (600)
+..++.+|+..+.. +..-....+ -.+++++..+. .+++.|+..||.+|.|++..- +..+.. ...+..|..++.
T Consensus 3 R~ggli~Laa~ai~l~~~~~~~l~-~Il~pVL~~~~-D~d~rVRy~AcEaL~ni~k~~--~~~~l~~f~~IF~~L~kl~~ 78 (97)
T PF12755_consen 3 RKGGLIGLAAVAIALGKDISKYLD-EILPPVLKCFD-DQDSRVRYYACEALYNISKVA--RGEILPYFNEIFDALCKLSA 78 (97)
T ss_pred hhHHHHHHHHHHHHchHhHHHHHH-HHHHHHHHHcC-CCcHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHc
Confidence 44566677777655 333222333 37889999985 478899999999999998432 223322 357778888888
Q ss_pred CCCHHHHHHHHHHHHHh
Q 007520 483 SGNIDVIAQVARGLANF 499 (600)
Q Consensus 483 s~~~~v~~~A~~aL~nL 499 (600)
+.++.|+..| ..|-+|
T Consensus 79 D~d~~Vr~~a-~~Ld~l 94 (97)
T PF12755_consen 79 DPDENVRSAA-ELLDRL 94 (97)
T ss_pred CCchhHHHHH-HHHHHH
Confidence 9999987666 555444
No 171
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=94.68 E-value=2.9 Score=42.66 Aligned_cols=199 Identities=13% Similarity=0.055 Sum_probs=126.0
Q ss_pred CHHHHHHHHHHHHHhhC-CcchHHHHHH-cCCHHHHHH-HHcc----CCC---H---HHHHHHHHHHHHhhcCCccHHHH
Q 007520 360 DPDVQIHAVKVVANLAA-EDINQEKIVE-EGGLDALLL-LLRT----SQN---T---TILRVASGAIANLAMNEMNQGLI 426 (600)
Q Consensus 360 ~~~vr~~Aa~aL~nLa~-~~~~~~~iv~-~G~I~~Lv~-lL~~----~~~---~---~v~~~Al~aL~NLa~~~~~r~~I 426 (600)
+++.|+.|..-|..--. .++-...+-. .|.+..|++ +..- ++. . .-.-.|+..|.-+|.+|+.|..+
T Consensus 8 ~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAshpetr~~F 87 (262)
T PF04078_consen 8 NPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVASHPETRMPF 87 (262)
T ss_dssp SHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH-TTTHHHH
T ss_pred CcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHcChHHHHHH
Confidence 56778777666664333 3443444443 344555543 2211 111 1 12223666677888999999999
Q ss_pred HHhCchhhhHhhhccCC----CHHHHHHHHHHHHHHhC--CchhHHHHHHcChHHHHHHHHcCCCHHHHHHHHHHHHHhh
Q 007520 427 MSRGGGQLLAKTASKTD----DPQTLRMVAGALANLCG--NEKLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFA 500 (600)
Q Consensus 427 ~~~G~I~~Lv~lL~~~~----~~~v~~~Aa~aL~nLa~--~~e~r~~i~~~G~i~~Lv~lL~s~~~~v~~~A~~aL~nLa 500 (600)
+++...-.|...|..+. -..++-...++++.|.. +++....+...+.+|..+..|..++...+..|..++..+-
T Consensus 88 l~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqKIL 167 (262)
T PF04078_consen 88 LKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQKIL 167 (262)
T ss_dssp HHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHHHH
T ss_pred HHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 99987777777774321 12456678889999975 5678888899999999999999998888888999999887
Q ss_pred cCCchh--hhhcchhhHHHHHhCCcHHHHHH-hhcCCCHHHHHHHHHHHHHhhcCchhHHHHHH
Q 007520 501 KCESRA--IVQGQRKGRSHLMEDSALEWLIA-NSKTNSASTRRHVELALCHLAQNEDNARDFIS 561 (600)
Q Consensus 501 ~~~~~~--~~q~~~~~r~~l~e~g~l~~Lv~-Ll~s~~~~v~~~Aa~aL~nLa~~~~~~~~lv~ 561 (600)
.++..- ..+ . ......-..++..++. +...+++.+-.+...+-..|+.++..+..+..
T Consensus 168 ~dd~GL~yiC~--t-~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnprar~aL~~ 228 (262)
T PF04078_consen 168 LDDVGLNYICQ--T-AERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNPRAREALRQ 228 (262)
T ss_dssp HSHHHHHHHTS--S-HHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTSTTHHHHHHH
T ss_pred cchhHHHHHhc--C-HHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCHHHHHHHHH
Confidence 653210 111 0 1111111234444444 56778999999999999999999988777764
No 172
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=94.67 E-value=0.27 Score=42.63 Aligned_cols=64 Identities=19% Similarity=0.235 Sum_probs=50.9
Q ss_pred cChHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchhhhhcchhhHHHHHh--CCcHHHHHHhhcCCCHHHHHHHHHH
Q 007520 471 DGAIKALLAMVRSGNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLME--DSALEWLIANSKTNSASTRRHVELA 545 (600)
Q Consensus 471 ~G~i~~Lv~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~q~~~~~r~~l~e--~g~l~~Lv~Ll~s~~~~v~~~Aa~a 545 (600)
.-.+++++..+.+.+..||..|+.+|.|++.. .+..++. ....+.|.+++.+.++.|+..|...
T Consensus 26 ~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~-----------~~~~~l~~f~~IF~~L~kl~~D~d~~Vr~~a~~L 91 (97)
T PF12755_consen 26 DEILPPVLKCFDDQDSRVRYYACEALYNISKV-----------ARGEILPYFNEIFDALCKLSADPDENVRSAAELL 91 (97)
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHH
Confidence 35788999999999999999999999999854 3444443 4577788888999999988877543
No 173
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=94.67 E-value=0.17 Score=60.19 Aligned_cols=130 Identities=22% Similarity=0.291 Sum_probs=100.9
Q ss_pred hhhhHhhhcc---CCCHHHHHHHHHHHHHHh-CCchhHHHHHHcChHHHHHHHHc-CCCHHHHHHHHHHHHHhhcCCchh
Q 007520 432 GQLLAKTASK---TDDPQTLRMVAGALANLC-GNEKLHTMLEEDGAIKALLAMVR-SGNIDVIAQVARGLANFAKCESRA 506 (600)
Q Consensus 432 I~~Lv~lL~~---~~~~~v~~~Aa~aL~nLa-~~~e~r~~i~~~G~i~~Lv~lL~-s~~~~v~~~A~~aL~nLa~~~~~~ 506 (600)
.|.++..+++ ..+|.++.+|.-+|+.++ -+.+.+. -.+|.|+..|. +++|.++.+++-+++-|+.+=|+
T Consensus 921 ~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fce-----s~l~llftimeksp~p~IRsN~VvalgDlav~fpn- 994 (1251)
T KOG0414|consen 921 APIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFCE-----SHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPN- 994 (1251)
T ss_pred HHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHHH-----HHHHHHHHHHhcCCCceeeecchheccchhhhccc-
Confidence 4555566533 257788888888998874 4445544 46788999996 99999999999999999987654
Q ss_pred hhhcchhhHHHHHhCCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCchhHHHHH-HcccHHHHHHhhhcCChHHHHHHHH
Q 007520 507 IVQGQRKGRSHLMEDSALEWLIANSKTNSASTRRHVELALCHLAQNEDNARDFI-SRGGAKELVQISIESSREDIRNLAK 585 (600)
Q Consensus 507 ~~q~~~~~r~~l~e~g~l~~Lv~Ll~s~~~~v~~~Aa~aL~nLa~~~~~~~~lv-~~G~l~~Lv~ll~~~~~~~ir~~A~ 585 (600)
+++ -+-+.|.+.+++.++.||..|..+|.+|-. ..|+ --|.++.+..++-+++ +.|+.+|.
T Consensus 995 -----------lie-~~T~~Ly~rL~D~~~~vRkta~lvlshLIL-----ndmiKVKGql~eMA~cl~D~~-~~IsdlAk 1056 (1251)
T KOG0414|consen 995 -----------LIE-PWTEHLYRRLRDESPSVRKTALLVLSHLIL-----NDMIKVKGQLSEMALCLEDPN-AEISDLAK 1056 (1251)
T ss_pred -----------ccc-hhhHHHHHHhcCccHHHHHHHHHHHHHHHH-----hhhhHhcccHHHHHHHhcCCc-HHHHHHHH
Confidence 222 367788899999999999999999999954 3444 4688999999998766 57888888
No 174
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=94.63 E-value=0.68 Score=47.38 Aligned_cols=173 Identities=21% Similarity=0.175 Sum_probs=105.9
Q ss_pred HHHHHHHHHHhhcCCccHHHHHHhC--chhhhHhhhcc---CCCHHHHHHHHHHHHHHhCCchhHHHHHHcCh--HHHHH
Q 007520 406 LRVASGAIANLAMNEMNQGLIMSRG--GGQLLAKTASK---TDDPQTLRMVAGALANLCGNEKLHTMLEEDGA--IKALL 478 (600)
Q Consensus 406 ~~~Al~aL~NLa~~~~~r~~I~~~G--~I~~Lv~lL~~---~~~~~v~~~Aa~aL~nLa~~~e~r~~i~~~G~--i~~Lv 478 (600)
+--++-.++-++.++.....+...+ +...+..++.. ...+..+..++++++|+-..+.++..+..... +...+
T Consensus 80 ~fP~lDLlRl~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~~~~~~~~~~~~~i~~~~ 159 (268)
T PF08324_consen 80 RFPALDLLRLAALHPPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSHPPGRQLLLSHFDSSILELL 159 (268)
T ss_dssp -HHHHHHHHHHCCCHCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSCCCHHHHHCTHHTCHHHHC
T ss_pred chhHHhHHHHHHhCccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCCccHHHHHhcccchHHHHH
Confidence 3345556666666655555444422 12333333322 24567788899999999999988888876543 33333
Q ss_pred HHHcCC----CHHHHHHHHHHHHHhhcCCchhhhhcchhhHH-HHHhCCcHHHHHHh-hcC-CCHHHHHHHHHHHHHhhc
Q 007520 479 AMVRSG----NIDVIAQVARGLANFAKCESRAIVQGQRKGRS-HLMEDSALEWLIAN-SKT-NSASTRRHVELALCHLAQ 551 (600)
Q Consensus 479 ~lL~s~----~~~v~~~A~~aL~nLa~~~~~~~~q~~~~~r~-~l~e~g~l~~Lv~L-l~s-~~~~v~~~Aa~aL~nLa~ 551 (600)
..+... +..++..++.++.|++..-.. .+. .=.....+..++.. ... .++++..+++.||.+|..
T Consensus 160 ~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~--------~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R~LvAlGtL~~ 231 (268)
T PF08324_consen 160 SSLLSSLLDSNKNVRIALATLLLNLSVLLHK--------NRSDEEWQSELLSSIIEVLSREESDEEALYRLLVALGTLLS 231 (268)
T ss_dssp HCCCTTS-HHHHHHHHHHHHHHHHHHHHHHH--------CTS-CCHHHHHHHHHHHHCHCCHTSHHHHHHHHHHHHHHHC
T ss_pred HHHhhccccccHHHHHHHHHHHHHHHHHHHh--------cCCChHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHhc
Confidence 333333 788999999999999854100 000 00001134455552 222 689999999999999998
Q ss_pred CchhHHHHHH-cccHHHHHHhhhcCChHHHHHHHHH
Q 007520 552 NEDNARDFIS-RGGAKELVQISIESSREDIRNLAKK 586 (600)
Q Consensus 552 ~~~~~~~lv~-~G~l~~Lv~ll~~~~~~~ir~~A~~ 586 (600)
.++....+.. .|+...+......+..+.+++.+..
T Consensus 232 ~~~~~~~~~~~l~~~~~~~~~~~~~~e~ri~~v~~e 267 (268)
T PF08324_consen 232 SSDSAKQLAKSLDVKSVLSKKANKSKEPRIKEVAAE 267 (268)
T ss_dssp CSHHHHHHCCCCTHHHHHHHHHHHTTSHHHHHHHHH
T ss_pred cChhHHHHHHHcChHHHHHHHHhcccchHHHHHhcc
Confidence 7777666665 4666666666655666667766643
No 175
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=94.62 E-value=0.47 Score=52.74 Aligned_cols=209 Identities=16% Similarity=0.221 Sum_probs=114.2
Q ss_pred CHHHHHHhhCCCCHHHHHHHHHHHHHhhC-Ccc-------hHHHHH-HcC---CHHHHHHHHccCCCH------------
Q 007520 348 GLPKILQLLTSEDPDVQIHAVKVVANLAA-EDI-------NQEKIV-EEG---GLDALLLLLRTSQNT------------ 403 (600)
Q Consensus 348 gV~~Lv~LL~s~~~~vr~~Aa~aL~nLa~-~~~-------~~~~iv-~~G---~I~~Lv~lL~~~~~~------------ 403 (600)
.|..|-.+|.++....|..|..+|-.|+. .|. +-..++ +.+ ..-++..+|+++.+.
T Consensus 304 ~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv~vcN~evEsLIsd~Nr~IstyAITtLLKTGt~e~idrLv~~I~sf 383 (898)
T COG5240 304 TVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKVSVCNKEVESLISDENRTISTYAITTLLKTGTEETIDRLVNLIPSF 383 (898)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCceeeecChhHHHHhhcccccchHHHHHHHHHcCchhhHHHHHHHHHHH
Confidence 36666688889999999999999998885 321 111111 110 011222333333222
Q ss_pred ------HHHHHHHHHHHHhhcC-CccHHH--------HHHhCc-------hhhhHhhhccCCCHHHHHHHHHHHHHHhCC
Q 007520 404 ------TILRVASGAIANLAMN-EMNQGL--------IMSRGG-------GQLLAKTASKTDDPQTLRMVAGALANLCGN 461 (600)
Q Consensus 404 ------~v~~~Al~aL~NLa~~-~~~r~~--------I~~~G~-------I~~Lv~lL~~~~~~~v~~~Aa~aL~nLa~~ 461 (600)
..+..+..|++.||.. |.-+.. +.+.|| +..+..++. .+|+..+.|+..||....+
T Consensus 384 vhD~SD~FKiI~ida~rsLsl~Fp~k~~s~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~--~~p~skEraLe~LC~fIED 461 (898)
T COG5240 384 VHDMSDGFKIIAIDALRSLSLLFPSKKLSYLDFLGSSLLQEGGLEFKKYMVDAISDAME--NDPDSKERALEVLCTFIED 461 (898)
T ss_pred HHhhccCceEEeHHHHHHHHhhCcHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHh--hCchHHHHHHHHHHHHHhh
Confidence 2233355666677655 443332 233454 344555553 3566677777777766544
Q ss_pred chhHHHHHH-------cC--------hHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchhhhhcchhhHHHHHhCCcHHH
Q 007520 462 EKLHTMLEE-------DG--------AIKALLAMVRSGNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLMEDSALEW 526 (600)
Q Consensus 462 ~e~r~~i~~-------~G--------~i~~Lv~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~q~~~~~r~~l~e~g~l~~ 526 (600)
.+..+..++ .| .+.-+..-+--.+.-||..|+.||.-++..-++. +.-..+...
T Consensus 462 cey~~I~vrIL~iLG~EgP~a~~P~~yvrhIyNR~iLEN~ivRsaAv~aLskf~ln~~d~-----------~~~~sv~~~ 530 (898)
T COG5240 462 CEYHQITVRILGILGREGPRAKTPGKYVRHIYNRLILENNIVRSAAVQALSKFALNISDV-----------VSPQSVENA 530 (898)
T ss_pred cchhHHHHHHHHHhcccCCCCCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHhccCcccc-----------ccHHHHHHH
Confidence 333322221 11 1111222222345667888999998887542221 222234455
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHhhcCchhHHHHHH---cccHHHHHH
Q 007520 527 LIANSKTNSASTRRHVELALCHLAQNEDNARDFIS---RGGAKELVQ 570 (600)
Q Consensus 527 Lv~Ll~s~~~~v~~~Aa~aL~nLa~~~~~~~~lv~---~G~l~~Lv~ 570 (600)
|-+.+++.|+.||.+|..+|.+|-.... +..++. -|-+|.|..
T Consensus 531 lkRclnD~DdeVRdrAsf~l~~~~~~da-~~pl~~sd~~~dipsle~ 576 (898)
T COG5240 531 LKRCLNDQDDEVRDRASFLLRNMRLSDA-CEPLFSSDELGDIPSLEL 576 (898)
T ss_pred HHHHhhcccHHHHHHHHHHHHhhhhhhh-hhccccccccCCcchhHH
Confidence 6667888999999999999999964333 333443 345555543
No 176
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=94.61 E-value=0.087 Score=47.35 Aligned_cols=71 Identities=18% Similarity=0.271 Sum_probs=60.4
Q ss_pred ChHHHHHHHH-cCCCHHHHHHHHHHHHHhhcCCchhhhhcchhhHHHHHhCCcHHHHHHhhcCCCHHHHHHHHHHHHHhh
Q 007520 472 GAIKALLAMV-RSGNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSKTNSASTRRHVELALCHLA 550 (600)
Q Consensus 472 G~i~~Lv~lL-~s~~~~v~~~A~~aL~nLa~~~~~~~~q~~~~~r~~l~e~g~l~~Lv~Ll~s~~~~v~~~Aa~aL~nLa 550 (600)
..+..|+.+| .+.++.+..-||.=|+.++..- +.+|..+.+.|+-..++.++.++|+.|+..|..|+..|.
T Consensus 43 ~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~--------p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm 114 (119)
T PF11698_consen 43 ELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHY--------PNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLM 114 (119)
T ss_dssp HHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH---------GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCcceeehhhcchHHHHHHC--------hhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 3678899999 4668888888999999999764 668898988999999999999999999999999998764
No 177
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=94.57 E-value=6.3 Score=47.30 Aligned_cols=122 Identities=16% Similarity=0.195 Sum_probs=75.8
Q ss_pred HHHHHhhhHHHHHHHHHhHHHHHHHhhhHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHhhhh-hhhhhhhhhHHhhhhh
Q 007520 94 LRESQISYDESMRNLVTRSEFLEKENAHLELEVEKILGELNHQKDQNNLKREKIVQLEISLKN-SKQYEMENSTYQKALA 172 (600)
Q Consensus 94 ~~~~~~~~~~~~~~l~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~n~~~~~~l~ 172 (600)
+.-...--++.+..+..-+..++.|...++.++.+..+.+++-|.....+...+..++-++.+ .+-...|+-.-.+.|+
T Consensus 328 ~~~e~~~~d~Ei~~~r~~~~~~~re~~~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~ 407 (1074)
T KOG0250|consen 328 LKDEVDAQDEEIEEARKDLDDLRREVNDLKEEIREIENSIRKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLK 407 (1074)
T ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 333444456777788888888888888888888888888888888888888888877777733 3333345544555555
Q ss_pred hhhhhhHHHHHHHHHHhHhHHHhhhhhHHHHHHHHHHHhhhhh
Q 007520 173 DTTQLYEKKIAELNKKLEDEHACFEGAVEQLDMVKKLLSDYQN 215 (600)
Q Consensus 173 ~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~~~~~~~~~~~q~ 215 (600)
..+.-++.+++.|...+++=+.-....+++...+++-+-++.+
T Consensus 408 ~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i~~~i~~l~k 450 (1074)
T KOG0250|consen 408 KEVEKLEEQINSLREELNEVKEKAKEEEEEKEHIEGEILQLRK 450 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 6666666666666555544433333444444443333333333
No 178
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=94.42 E-value=0.27 Score=54.95 Aligned_cols=147 Identities=11% Similarity=0.038 Sum_probs=87.1
Q ss_pred cccCchHHHhcccCCCCccccchHHHH---hhc---CchhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCC--
Q 007520 306 YTKDYISKGSSRFGAPMSLQKSNPSRE---LSG---QRATIAKICDEVGLPKILQLLTSEDPDVQIHAVKVVANLAAE-- 377 (600)
Q Consensus 306 ~~~g~i~~Lv~~L~s~~~~~r~~a~~~---L~~---~~~~~~~i~e~GgV~~Lv~LL~s~~~~vr~~Aa~aL~nLa~~-- 377 (600)
+..-.+..++..|++.++.+|..++.- +.. .=.....+...|. .|..-|....+++.-....+++.+...
T Consensus 601 ~l~~ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~--iLyE~lge~ypEvLgsil~Ai~~I~sv~~ 678 (975)
T COG5181 601 HLSMIVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGN--ILYENLGEDYPEVLGSILKAICSIYSVHR 678 (975)
T ss_pred chHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhH--HHHHhcCcccHHHHHHHHHHHHHHhhhhc
Confidence 444556666778888888888877653 111 0001111222222 133556677888877766666665542
Q ss_pred -cchHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcC-CccHHHHHHh-CchhhhHhhhccCCCHHHHHHHHHH
Q 007520 378 -DINQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMN-EMNQGLIMSR-GGGQLLAKTASKTDDPQTLRMVAGA 454 (600)
Q Consensus 378 -~~~~~~iv~~G~I~~Lv~lL~~~~~~~v~~~Al~aL~NLa~~-~~~r~~I~~~-G~I~~Lv~lL~~~~~~~v~~~Aa~a 454 (600)
...+.. -.|.+|.|..+|+ +....+..+....+..+|.+ |+. ....+. ..---|+.+|.. .+-.++++|...
T Consensus 679 ~~~mqpP--i~~ilP~ltPILr-nkh~Kv~~nti~lvg~I~~~~pey-i~~rEWMRIcfeLvd~Lks-~nKeiRR~A~~t 753 (975)
T COG5181 679 FRSMQPP--ISGILPSLTPILR-NKHQKVVANTIALVGTICMNSPEY-IGVREWMRICFELVDSLKS-WNKEIRRNATET 753 (975)
T ss_pred ccccCCc--hhhccccccHhhh-hhhHHHhhhHHHHHHHHHhcCccc-CCHHHHHHHHHHHHHHHHH-hhHHHHHhhhhh
Confidence 222222 3467999999999 66777888888888888877 331 111110 011235667743 556888988888
Q ss_pred HHHHh
Q 007520 455 LANLC 459 (600)
Q Consensus 455 L~nLa 459 (600)
++.++
T Consensus 754 fG~Is 758 (975)
T COG5181 754 FGCIS 758 (975)
T ss_pred hhhHH
Confidence 77665
No 179
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=94.40 E-value=0.13 Score=48.63 Aligned_cols=146 Identities=20% Similarity=0.272 Sum_probs=93.9
Q ss_pred HHHHHHHHcc-CCCHHHHHHHHHHHHHhhcCCccHHHHHHhCchhhhHhhhccCCCHHHHHHHHHHHHHHh-CCchhHHH
Q 007520 390 LDALLLLLRT-SQNTTILRVASGAIANLAMNEMNQGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLC-GNEKLHTM 467 (600)
Q Consensus 390 I~~Lv~lL~~-~~~~~v~~~Al~aL~NLa~~~~~r~~I~~~G~I~~Lv~lL~~~~~~~v~~~Aa~aL~nLa-~~~e~r~~ 467 (600)
+..++..|.. ..+++++..++-++..+- +..+....+. +-..+-..+.. .+.+....++.++..|- +.++....
T Consensus 5 l~~lL~~L~~~~~~~~~r~~a~v~l~k~l--~~~~~~~~~~-~~~~i~~~~~~-~~~d~~i~~~~~l~~lfp~~~dv~~~ 80 (157)
T PF11701_consen 5 LDTLLTSLDMLRQPEEVRSHALVILSKLL--DAAREEFKEK-ISDFIESLLDE-GEMDSLIIAFSALTALFPGPPDVGSE 80 (157)
T ss_dssp CCHHHHHHHCTTTSCCHHHHHHHHHHHHH--HHHHHHHHHH-HHHHHHHHHCC-HHCCHHHHHHHHHHHHCTTTHHHHHH
T ss_pred HHHHHHHhcccCCCHhHHHHHHHHHHHHH--HHhHHHHHHH-HHHHHHHHHcc-ccchhHHHHHHHHHHHhCCCHHHHHH
Confidence 4455555553 345567888888888873 3333333221 22233333322 22234556666777664 55676655
Q ss_pred H-HHcChHHHHHHHHc--CCCHHHHHHHHHHHHHhhcCCchhhhhcchhhHHHHHhCCcHHHHHHhhc-CCCHH-HHHHH
Q 007520 468 L-EEDGAIKALLAMVR--SGNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSK-TNSAS-TRRHV 542 (600)
Q Consensus 468 i-~~~G~i~~Lv~lL~--s~~~~v~~~A~~aL~nLa~~~~~~~~q~~~~~r~~l~e~g~l~~Lv~Ll~-s~~~~-v~~~A 542 (600)
+ ...|.++.++.++. +.+..+...++.+|..=|.+ +.+|. ++...+++||-.+.. ++++. ++..|
T Consensus 81 l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d---------~~~r~-~I~~~~~~~L~~~~~~~~~~~~ir~~A 150 (157)
T PF11701_consen 81 LFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACID---------KSCRT-FISKNYVSWLKELYKNSKDDSEIRVLA 150 (157)
T ss_dssp HCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTS---------HHHHH-CCHHHCHHHHHHHTTTCC-HH-CHHHH
T ss_pred HHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHcc---------HHHHH-HHHHHHHHHHHHHHccccchHHHHHHH
Confidence 5 46788999999998 88899999999999887754 34444 445569999999985 56666 89999
Q ss_pred HHHHHHh
Q 007520 543 ELALCHL 549 (600)
Q Consensus 543 a~aL~nL 549 (600)
+.+|+.|
T Consensus 151 ~v~L~Kl 157 (157)
T PF11701_consen 151 AVGLCKL 157 (157)
T ss_dssp HHHHHHC
T ss_pred HHHHhcC
Confidence 9888754
No 180
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.34 E-value=1.7 Score=50.00 Aligned_cols=157 Identities=13% Similarity=0.111 Sum_probs=107.4
Q ss_pred CHHHHHH----hhCCCCHHHHHHHHHHHHHhhCC-cchHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcC-Cc
Q 007520 348 GLPKILQ----LLTSEDPDVQIHAVKVVANLAAE-DINQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMN-EM 421 (600)
Q Consensus 348 gV~~Lv~----LL~s~~~~vr~~Aa~aL~nLa~~-~~~~~~iv~~G~I~~Lv~lL~~~~~~~v~~~Al~aL~NLa~~-~~ 421 (600)
-++.++. -+.++|..-|..|+.+++.+-.. +..+..-...+++|.++.++. ++..-++..+.|+|..++.. ++
T Consensus 361 Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~-D~sl~VkdTaAwtlgrI~d~l~e 439 (859)
T KOG1241|consen 361 IVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMS-DPSLWVKDTAAWTLGRIADFLPE 439 (859)
T ss_pred chhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhc-CchhhhcchHHHHHHHHHhhchh
Confidence 3444444 45688999999999999988774 445666666778999999998 77888899999999999987 43
Q ss_pred cHH-HHHHhCchhhhHhhhccCCCHHHHHHHHHHHHHHhCC-----chh-HHHHHH---cChHHHHHHHHc---CCCHHH
Q 007520 422 NQG-LIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLCGN-----EKL-HTMLEE---DGAIKALLAMVR---SGNIDV 488 (600)
Q Consensus 422 ~r~-~I~~~G~I~~Lv~lL~~~~~~~v~~~Aa~aL~nLa~~-----~e~-r~~i~~---~G~i~~Lv~lL~---s~~~~v 488 (600)
.+. ...-.+.++.++.-|. +.|.+..++||++-+|+.. +.. ...... ...|..|+..-+ .....+
T Consensus 440 ~~~n~~~l~~~l~~l~~gL~--DePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNL 517 (859)
T KOG1241|consen 440 AIINQELLQSKLSALLEGLN--DEPRVASNVCWAFISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSNL 517 (859)
T ss_pred hcccHhhhhHHHHHHHHHhh--hCchHHHHHHHHHHHHHHHHHHhccCCCCCCccchhHHHHHHHHHhhccccccchhhH
Confidence 322 2233556777777774 5789999999999999811 111 111111 112233333332 234568
Q ss_pred HHHHHHHHHHhhcCCchhh
Q 007520 489 IAQVARGLANFAKCESRAI 507 (600)
Q Consensus 489 ~~~A~~aL~nLa~~~~~~~ 507 (600)
|..|-.+|.-|..+.+...
T Consensus 518 R~AAYeALmElIk~st~~v 536 (859)
T KOG1241|consen 518 RSAAYEALMELIKNSTDDV 536 (859)
T ss_pred HHHHHHHHHHHHHcCcHHH
Confidence 8889999999998876543
No 181
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=94.31 E-value=1.6 Score=52.01 Aligned_cols=223 Identities=16% Similarity=0.160 Sum_probs=131.3
Q ss_pred cCchHHHhcccCCCCccccchHHHH---hhcCchhHHHHHhcCCHHHHHHhhC-CCCHHHHHHHHHHHHHhhCCcchHHH
Q 007520 308 KDYISKGSSRFGAPMSLQKSNPSRE---LSGQRATIAKICDEVGLPKILQLLT-SEDPDVQIHAVKVVANLAAEDINQEK 383 (600)
Q Consensus 308 ~g~i~~Lv~~L~s~~~~~r~~a~~~---L~~~~~~~~~i~e~GgV~~Lv~LL~-s~~~~vr~~Aa~aL~nLa~~~~~~~~ 383 (600)
.+.+..|.+.+++.....+-+|++- +....+ ..++ ...|..++.++. .+++..-..|+-+|+.|+.-.---..
T Consensus 340 E~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp--~~La-d~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlps 416 (1133)
T KOG1943|consen 340 EFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLP--PELA-DQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLPS 416 (1133)
T ss_pred HHHHHHHHHhccCCcchhhHHHHHHHHHHHccCc--HHHH-HHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcchH
Confidence 4567778888888888888888865 333222 1111 123444555443 23355556788888888853222221
Q ss_pred HHHcCCHHHHHHHHcc-------CCCHHHHHHHHHHHHHhhcC--CccHHHHHHhCchhh-hHhhhccCCCHHHHHHHHH
Q 007520 384 IVEEGGLDALLLLLRT-------SQNTTILRVASGAIANLAMN--EMNQGLIMSRGGGQL-LAKTASKTDDPQTLRMVAG 453 (600)
Q Consensus 384 iv~~G~I~~Lv~lL~~-------~~~~~v~~~Al~aL~NLa~~--~~~r~~I~~~G~I~~-Lv~lL~~~~~~~v~~~Aa~ 453 (600)
.+.. ++|.++..|.- +....++..|+.++|.+++. +..-..+... ..+. |...+.+ .+...+++|..
T Consensus 417 ~l~d-VvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~-L~s~LL~~AlFD-revncRRAAsA 493 (1133)
T KOG1943|consen 417 LLED-VVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQS-LASALLIVALFD-REVNCRRAASA 493 (1133)
T ss_pred HHHH-HHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHH-HHHHHHHHHhcC-chhhHhHHHHH
Confidence 2222 45555555531 12346899999999999976 3322333332 2233 3344433 55578888888
Q ss_pred HHHHHhCC----ch----------------------hHHHHHH-cChHHHHHHHH-----cCCCHHHHHHHHHHHHHhhc
Q 007520 454 ALANLCGN----EK----------------------LHTMLEE-DGAIKALLAMV-----RSGNIDVIAQVARGLANFAK 501 (600)
Q Consensus 454 aL~nLa~~----~e----------------------~r~~i~~-~G~i~~Lv~lL-----~s~~~~v~~~A~~aL~nLa~ 501 (600)
|+-...+- |. .+..+.. .|...+++.-+ .+-++.++..++++|..|+.
T Consensus 494 AlqE~VGR~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~Ls~ 573 (1133)
T KOG1943|consen 494 ALQENVGRQGNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYALHKLSL 573 (1133)
T ss_pred HHHHHhccCCCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHH
Confidence 88766532 11 1222222 24444455443 35789999999999999987
Q ss_pred CCchhhhhcchhhHHHHHhCCcHHHHHHhhcCCCHHHHHHHHHHHHH
Q 007520 502 CESRAIVQGQRKGRSHLMEDSALEWLIANSKTNSASTRRHVELALCH 548 (600)
Q Consensus 502 ~~~~~~~q~~~~~r~~l~e~g~l~~Lv~Ll~s~~~~v~~~Aa~aL~n 548 (600)
..|. ....+.+|+|+....+++...++.+..+...
T Consensus 574 ~~pk------------~~a~~~L~~lld~~ls~~~~~r~g~~la~~e 608 (1133)
T KOG1943|consen 574 TEPK------------YLADYVLPPLLDSTLSKDASMRHGVFLAAGE 608 (1133)
T ss_pred hhHH------------hhcccchhhhhhhhcCCChHHhhhhHHHHHH
Confidence 6543 4456788999998888877776654444433
No 182
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.27 E-value=1.9 Score=49.27 Aligned_cols=165 Identities=14% Similarity=0.171 Sum_probs=101.1
Q ss_pred HHHHHHHHccCCCHHHHHHHHHHHHHhhcCCccHHHHHHhCchhhhHhhhccCCCHHHHHHHHHHHHHHhCCchhHHHHH
Q 007520 390 LDALLLLLRTSQNTTILRVASGAIANLAMNEMNQGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLCGNEKLHTMLE 469 (600)
Q Consensus 390 I~~Lv~lL~~~~~~~v~~~Al~aL~NLa~~~~~r~~I~~~G~I~~Lv~lL~~~~~~~v~~~Aa~aL~nLa~~~e~r~~i~ 469 (600)
+..|..+|. +....++..|+..++.|+..+.....+-.. ...++..|....|..+++.|+..|.-+|.....+.
T Consensus 331 ~~~Lg~fls-~rE~NiRYLaLEsm~~L~ss~~s~davK~h--~d~Ii~sLkterDvSirrravDLLY~mcD~~Nak~--- 404 (938)
T KOG1077|consen 331 VNQLGQFLS-HRETNIRYLALESMCKLASSEFSIDAVKKH--QDTIINSLKTERDVSIRRRAVDLLYAMCDVSNAKQ--- 404 (938)
T ss_pred HHHHHHHhh-cccccchhhhHHHHHHHHhccchHHHHHHH--HHHHHHHhccccchHHHHHHHHHHHHHhchhhHHH---
Confidence 444445554 334455666666666666665555555544 56677777655788999999999999887655544
Q ss_pred HcChHHHHHHHHcCCCHHHHHHHHHHHHHhhcC---Cchhhhhcch---hhHHHHHhCCcHHHHHHhhcCCCHHHHHHHH
Q 007520 470 EDGAIKALLAMVRSGNIDVIAQVARGLANFAKC---ESRAIVQGQR---KGRSHLMEDSALEWLIANSKTNSASTRRHVE 543 (600)
Q Consensus 470 ~~G~i~~Lv~lL~s~~~~v~~~A~~aL~nLa~~---~~~~~~q~~~---~~r~~l~e~g~l~~Lv~Ll~s~~~~v~~~Aa 543 (600)
.|.-|++.|.+.++.+++..+-=.+-|+.- +-+|.....- ..-..++++++...+++..- .+++++..|+
T Consensus 405 ---IV~elLqYL~tAd~sireeivlKvAILaEKyAtDy~WyVdviLqLiriagd~vsdeVW~RvvQiVv-Nnedlq~yaa 480 (938)
T KOG1077|consen 405 ---IVAELLQYLETADYSIREEIVLKVAILAEKYATDYSWYVDVILQLIRIAGDYVSDEVWYRVVQIVV-NNEDLQGYAA 480 (938)
T ss_pred ---HHHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhcccccHHHHHHhheeEe-cchhhhHHHH
Confidence 344577777777777777655555555431 1111110000 00001334556666666543 4678999999
Q ss_pred HHHHHhhcCchhHHHHHHccc
Q 007520 544 LALCHLAQNEDNARDFISRGG 564 (600)
Q Consensus 544 ~aL~nLa~~~~~~~~lv~~G~ 564 (600)
..+...-..+.+...|+..||
T Consensus 481 k~~fe~Lq~~a~hE~mVKvgg 501 (938)
T KOG1077|consen 481 KRLFEYLQKPACHENMVKVGG 501 (938)
T ss_pred HHHHHHHhhhHHHHHHHHhhh
Confidence 988888778888888887654
No 183
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=94.21 E-value=15 Score=43.29 Aligned_cols=22 Identities=23% Similarity=0.395 Sum_probs=16.8
Q ss_pred hhhhhhhhhhHHHHHHHHHHhH
Q 007520 169 KALADTTQLYEKKIAELNKKLE 190 (600)
Q Consensus 169 ~~l~~~~~~~~~~~~~l~~~l~ 190 (600)
-.|...+..+|++|++|+.++.
T Consensus 420 E~Lsr~~d~aEs~iadlkEQVD 441 (1243)
T KOG0971|consen 420 ERLSRELDQAESTIADLKEQVD 441 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3466678888888888887775
No 184
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=94.18 E-value=3.8 Score=43.19 Aligned_cols=190 Identities=19% Similarity=0.207 Sum_probs=110.3
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHhhCCcchHHHHH--HcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcC---CccH
Q 007520 349 LPKILQLLTSEDPDVQIHAVKVVANLAAEDINQEKIV--EEGGLDALLLLLRTSQNTTILRVASGAIANLAMN---EMNQ 423 (600)
Q Consensus 349 V~~Lv~LL~s~~~~vr~~Aa~aL~nLa~~~~~~~~iv--~~G~I~~Lv~lL~~~~~~~v~~~Al~aL~NLa~~---~~~r 423 (600)
+...+..+.......|..|...|.++.........+. ....+..+...++.+...+ +..|+.++.-|+.. ....
T Consensus 45 L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E-~~lA~~~l~Ll~ltlg~g~~~ 123 (309)
T PF05004_consen 45 LKEAIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEE-QALAARALALLALTLGAGEDS 123 (309)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHH-HHHHHHHHHHHhhhcCCCccH
Confidence 4444555666778899999999988664322222222 1224666777787554433 45577777777765 2455
Q ss_pred HHHHHhCchhhhHhhhccCC-CHHHHHHHHHHHHHH---hCC-chhHHHHHHcChHHHHHHH--Hc----------CCCH
Q 007520 424 GLIMSRGGGQLLAKTASKTD-DPQTLRMVAGALANL---CGN-EKLHTMLEEDGAIKALLAM--VR----------SGNI 486 (600)
Q Consensus 424 ~~I~~~G~I~~Lv~lL~~~~-~~~v~~~Aa~aL~nL---a~~-~e~r~~i~~~G~i~~Lv~l--L~----------s~~~ 486 (600)
..+++. ..|+|...+..+. .+.++..++.+|+-+ ++. ++...... ..+..+... .. .+++
T Consensus 124 ~ei~~~-~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~--~~le~if~~~~~~~~~~~~~~~~~~~~ 200 (309)
T PF05004_consen 124 EEIFEE-LKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELM--ESLESIFLLSILKSDGNAPVVAAEDDA 200 (309)
T ss_pred HHHHHH-HHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHH--HHHHHHHHHHhcCcCCCcccccCCCcc
Confidence 566664 6788888886543 335545555454433 332 22211111 122222211 11 1245
Q ss_pred HHHHHHHHHHHHhhcCCchhhhhcchhhHHHHHhCCcHHHHHHhhcCCCHHHHHHHHHHHHHhh
Q 007520 487 DVIAQVARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSKTNSASTRRHVELALCHLA 550 (600)
Q Consensus 487 ~v~~~A~~aL~nLa~~~~~~~~q~~~~~r~~l~e~g~l~~Lv~Ll~s~~~~v~~~Aa~aL~nLa 550 (600)
.+...|+.+-+-|...-|.. .... . -...+|.|+.+|.+++..||..|..+|.-|.
T Consensus 201 ~l~~aAL~aW~lLlt~~~~~------~~~~-~-~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~ 256 (309)
T PF05004_consen 201 ALVAAALSAWALLLTTLPDS------KLED-L-LEEALPALSELLDSDDVDVRIAAGEAIALLY 256 (309)
T ss_pred HHHHHHHHHHHHHHhcCCHH------HHHH-H-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 67877777766665443221 1111 1 1347899999999999999999998888773
No 185
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=94.18 E-value=14 Score=42.95 Aligned_cols=43 Identities=14% Similarity=0.120 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHhhhHHHHHHHHH
Q 007520 88 YEFEKQLRESQISYDESMRNLVTRSEFLEKENAHLELEVEKIL 130 (600)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~e~~~~~~~~~~~~ 130 (600)
..++.+++..--+.-++...|+.+.+.++.+..+.+.+++++-
T Consensus 247 ~~l~~~~~~~GG~~~~~r~~Le~ei~~le~e~~e~~~~l~~l~ 289 (650)
T TIGR03185 247 ESLEKKFRSEGGDLFEEREQLERQLKEIEAARKANRAQLRELA 289 (650)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555555544445555555666666666666555555555544
No 186
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=94.16 E-value=1.1 Score=45.77 Aligned_cols=94 Identities=17% Similarity=0.234 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHHhhcCCchhhhhcchhhHHHHHhCCcHHHHHHhhc-CCCHHHHHHHHHHHHHh-hcCchhHHHHHHccc
Q 007520 487 DVIAQVARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSK-TNSASTRRHVELALCHL-AQNEDNARDFISRGG 564 (600)
Q Consensus 487 ~v~~~A~~aL~nLa~~~~~~~~q~~~~~r~~l~e~g~l~~Lv~Ll~-s~~~~v~~~Aa~aL~nL-a~~~~~~~~lv~~G~ 564 (600)
.....|++.|..++-- |+..|..+.+..++..|+.++. ..++.++..+..+|.++ ..++.+.+.+.+.+|
T Consensus 106 ~li~~aL~vLQGl~LL--------Hp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~G 177 (257)
T PF08045_consen 106 SLIALALRVLQGLCLL--------HPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNG 177 (257)
T ss_pred HHHHHHHHHHHHHHHc--------CchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCC
Confidence 3455677777777755 4678888999999999999994 46788999988888776 567889999999999
Q ss_pred HHHHHHhhhcCChH-HHHHHHHHHH
Q 007520 565 AKELVQISIESSRE-DIRNLAKKTM 588 (600)
Q Consensus 565 l~~Lv~ll~~~~~~-~ir~~A~~~L 588 (600)
+..++.++++.+.. +++-+....|
T Consensus 178 l~~v~~llk~~~~~~~~r~K~~EFL 202 (257)
T PF08045_consen 178 LSTVCSLLKSKSTDRELRLKCIEFL 202 (257)
T ss_pred HHHHHHHHccccccHHHhHHHHHHH
Confidence 99999999987654 4666555443
No 187
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=94.16 E-value=0.6 Score=54.57 Aligned_cols=197 Identities=15% Similarity=0.148 Sum_probs=127.4
Q ss_pred HHHHhhC-CcchHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcCCccHHHHHHhCchh--hhHhhhccCCCHH
Q 007520 370 VVANLAA-EDINQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMNEMNQGLIMSRGGGQ--LLAKTASKTDDPQ 446 (600)
Q Consensus 370 aL~nLa~-~~~~~~~iv~~G~I~~Lv~lL~~~~~~~v~~~Al~aL~NLa~~~~~r~~I~~~G~I~--~Lv~lL~~~~~~~ 446 (600)
+|++++. ++.++..+.+.||...+..++......++...+++.+.|++.....+........+. .+-.++....+.+
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~w~~~e 573 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFIDFSVFKVLLNKWDSIE 573 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcchhh
Confidence 8889887 788999999999999999999988888899999999999998855544443322222 3434555555557
Q ss_pred HHHHHHHHHHHHhCCchhHHHHHHcChHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchhhhhcchhhHHHHHhCCcHHH
Q 007520 447 TLRMVAGALANLCGNEKLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLMEDSALEW 526 (600)
Q Consensus 447 v~~~Aa~aL~nLa~~~e~r~~i~~~G~i~~Lv~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~q~~~~~r~~l~e~g~l~~ 526 (600)
....|++.|+.+..+.+. ....+.-+.+-.++ ..++....... .. +.-..-+.+
T Consensus 574 rsY~~~siLa~ll~~~~~---~~~~~~r~~~~~~l-----------~e~i~~~~~~~-----------~~-~~~~~~f~~ 627 (699)
T KOG3665|consen 574 RSYNAASILALLLSDSEK---TTECVFRNSVNELL-----------VEAISRWLTSE-----------IR-VINDRSFFP 627 (699)
T ss_pred HHHHHHHHHHHHHhCCCc---CccccchHHHHHHH-----------HHHhhccCccc-----------ee-ehhhhhcch
Confidence 778888888887655332 11111111111111 11112211110 00 111222222
Q ss_pred -HHHhhc-CCCHHHHHHHHHHHHHhhc-CchhHHHHHHcccHHHHHHhhhcCChHHHHHHHHHHHhcCc
Q 007520 527 -LIANSK-TNSASTRRHVELALCHLAQ-NEDNARDFISRGGAKELVQISIESSREDIRNLAKKTMKSNP 592 (600)
Q Consensus 527 -Lv~Ll~-s~~~~v~~~Aa~aL~nLa~-~~~~~~~lv~~G~l~~Lv~ll~~~~~~~ir~~A~~~L~~~p 592 (600)
+..++. +..+..+..|.|++.+++. ++++++.+...|+++.+.++...+....++..+...+.++-
T Consensus 628 ~~~~il~~s~~~g~~lWal~ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 696 (699)
T KOG3665|consen 628 RILRILRLSKSDGSQLWALWTIKNVLEQNKEYCKLVRESNGFELIENIRVLSEVVDVKEEAVLVIESCE 696 (699)
T ss_pred hHHHHhcccCCCchHHHHHHHHHHHHHcChhhhhhhHhccchhhhhhcchhHHHHHHHHHHHHHhhccc
Confidence 444433 4567899999999999965 66788888899999999888766556668888887766543
No 188
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=94.15 E-value=14 Score=42.84 Aligned_cols=29 Identities=14% Similarity=0.111 Sum_probs=18.9
Q ss_pred hhhhhcccchhhHHHHHHHHHHHHHHHHH
Q 007520 211 SDYQNSNQGQKEVHELCVKLKETRQLHES 239 (600)
Q Consensus 211 ~~~q~~~~~~~e~~~l~~~~~d~~~~~e~ 239 (600)
+..|+.+....|++.|.+..++..+++..
T Consensus 369 ~i~e~k~nve~elqsL~~l~aerqeQide 397 (1265)
T KOG0976|consen 369 SIQEKKENVEEELQSLLELQAERQEQIDE 397 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555778888877777777775
No 189
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=94.11 E-value=1.6 Score=45.54 Aligned_cols=169 Identities=15% Similarity=0.160 Sum_probs=116.1
Q ss_pred CHHHHH-HHHccCCCHHHHHHHHHHHHHhhcCCccHHHHHHhCchhhhHhhhccCCCHHHHHHHHHHHHHHh--CCchhH
Q 007520 389 GLDALL-LLLRTSQNTTILRVASGAIANLAMNEMNQGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLC--GNEKLH 465 (600)
Q Consensus 389 ~I~~Lv-~lL~~~~~~~v~~~Al~aL~NLa~~~~~r~~I~~~G~I~~Lv~lL~~~~~~~v~~~Aa~aL~nLa--~~~e~r 465 (600)
.+..|+ ..++ ++++.++..|..+|.-.|.-+. .+... .++.+...+.. +++.++..|+.+|..+. .+...-
T Consensus 27 ll~~lI~P~v~-~~~~~vR~~al~cLGl~~Lld~---~~a~~-~l~l~~~~~~~-~~~~v~~~al~~l~Dll~~~g~~~~ 100 (298)
T PF12719_consen 27 LLDSLILPAVQ-SSDPAVRELALKCLGLCCLLDK---ELAKE-HLPLFLQALQK-DDEEVKITALKALFDLLLTHGIDIF 100 (298)
T ss_pred HHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHhCh---HHHHH-HHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHcCchhc
Confidence 344444 4555 6678999999999998887633 22222 46677777744 57789999999998885 222221
Q ss_pred HH-------HHHcChHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchhhhhcchhhHHHHHh-CCcHHHHHHhhc----C
Q 007520 466 TM-------LEEDGAIKALLAMVRSGNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLME-DSALEWLIANSK----T 533 (600)
Q Consensus 466 ~~-------i~~~G~i~~Lv~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~q~~~~~r~~l~e-~g~l~~Lv~Ll~----s 533 (600)
.. ......+..+...+.+.++.++..|+.+++-|-.++- +.+ ..++..|+-+-- .
T Consensus 101 ~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~-------------i~~~~~vL~~Lll~yF~p~t~ 167 (298)
T PF12719_consen 101 DSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGR-------------ISDPPKVLSRLLLLYFNPSTE 167 (298)
T ss_pred cchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCC-------------CCcHHHHHHHHHHHHcCcccC
Confidence 11 1224567778888888899999999999999876531 222 345555554322 2
Q ss_pred CCHHHHHHHHHHHHHhhcCchhHHHHHHcccHHHHHHhhhcCC
Q 007520 534 NSASTRRHVELALCHLAQNEDNARDFISRGGAKELVQISIESS 576 (600)
Q Consensus 534 ~~~~v~~~Aa~aL~nLa~~~~~~~~lv~~G~l~~Lv~ll~~~~ 576 (600)
+++.++..-...+-..|.+....+..+..++++.+..+.....
T Consensus 168 ~~~~LrQ~L~~Ffp~y~~s~~~~Q~~l~~~f~~~l~~~~~~~~ 210 (298)
T PF12719_consen 168 DNQRLRQCLSVFFPVYASSSPENQERLAEAFLPTLRTLSNAPD 210 (298)
T ss_pred CcHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhCcc
Confidence 3578888888888888887776677777778888888877644
No 190
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=94.09 E-value=0.17 Score=57.59 Aligned_cols=193 Identities=15% Similarity=0.123 Sum_probs=121.0
Q ss_pred HHhhCCCCHHHHHHHHHHHHHhhCCcchH--H-HHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcCCccHHHH-HH
Q 007520 353 LQLLTSEDPDVQIHAVKVVANLAAEDINQ--E-KIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMNEMNQGLI-MS 428 (600)
Q Consensus 353 v~LL~s~~~~vr~~Aa~aL~nLa~~~~~~--~-~iv~~G~I~~Lv~lL~~~~~~~v~~~Al~aL~NLa~~~~~r~~I-~~ 428 (600)
+..|++.++.+|.+|+..++.++.--.++ . .+...|.| |...|. ...+++....++||..+...-..-... =-
T Consensus 805 L~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvv--LyEylg-eeypEvLgsILgAikaI~nvigm~km~pPi 881 (1172)
T KOG0213|consen 805 LWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVV--LYEYLG-EEYPEVLGSILGAIKAIVNVIGMTKMTPPI 881 (1172)
T ss_pred HHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHH--HHHhcC-cccHHHHHHHHHHHHHHHHhccccccCCCh
Confidence 45678999999999999999887522222 2 23334433 456665 567888888888887776442111100 11
Q ss_pred hCchhhhHhhhccCCCHHHHHHHHHHHHHHhCC-ch---hHHHHHHcChHHHHHHHHcCCCHHHHHHHHHHHHHhhcCC-
Q 007520 429 RGGGQLLAKTASKTDDPQTLRMVAGALANLCGN-EK---LHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFAKCE- 503 (600)
Q Consensus 429 ~G~I~~Lv~lL~~~~~~~v~~~Aa~aL~nLa~~-~e---~r~~i~~~G~i~~Lv~lL~s~~~~v~~~A~~aL~nLa~~~- 503 (600)
.|.+|.|..+|.+ .+..++.+++..+..+|.. ++ .|.-+ ...--|+.+|.+.+..++.+|..+++.++..-
T Consensus 882 ~dllPrltPILkn-rheKVqen~IdLvg~IadrgpE~v~aREWM---RIcfeLlelLkahkK~iRRaa~nTfG~IakaIG 957 (1172)
T KOG0213|consen 882 KDLLPRLTPILKN-RHEKVQENCIDLVGTIADRGPEYVSAREWM---RICFELLELLKAHKKEIRRAAVNTFGYIAKAIG 957 (1172)
T ss_pred hhhcccchHhhhh-hHHHHHHHHHHHHHHHHhcCcccCCHHHHH---HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhcC
Confidence 4578999999964 7779999999999988843 33 12211 11123677778889999999999999887642
Q ss_pred chhh---------hh------cchhhHHHHHhC----CcHHHHHHhhcCCCHHHHHHHHHHHHHhhcC
Q 007520 504 SRAI---------VQ------GQRKGRSHLMED----SALEWLIANSKTNSASTRRHVELALCHLAQN 552 (600)
Q Consensus 504 ~~~~---------~q------~~~~~r~~l~e~----g~l~~Lv~Ll~s~~~~v~~~Aa~aL~nLa~~ 552 (600)
|... .| ++..+-.++.+. .++|.|+.=-..+...||.....+++.|...
T Consensus 958 PqdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~pFtVLPalmneYrtPe~nVQnGVLkalsf~Fey 1025 (1172)
T KOG0213|consen 958 PQDVLATLLNNLKVQERQNRVCTTVAIAIVAETCGPFTVLPALMNEYRTPEANVQNGVLKALSFMFEY 1025 (1172)
T ss_pred HHHHHHHHHhcchHHHHHhchhhhhhhhhhhhhcCchhhhHHHHhhccCchhHHHHhHHHHHHHHHHH
Confidence 2110 00 001122223332 3455555555567788999999999988754
No 191
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=94.01 E-value=0.48 Score=54.55 Aligned_cols=188 Identities=15% Similarity=0.086 Sum_probs=124.4
Q ss_pred CcchHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHH-hhcCCccHHHHHHhCchhhhHhhhccCCCHHHHHHHHHHH
Q 007520 377 EDINQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIAN-LAMNEMNQGLIMSRGGGQLLAKTASKTDDPQTLRMVAGAL 455 (600)
Q Consensus 377 ~~~~~~~iv~~G~I~~Lv~lL~~~~~~~v~~~Al~aL~N-La~~~~~r~~I~~~G~I~~Lv~lL~~~~~~~v~~~Aa~aL 455 (600)
...-+...+..||...|+.+.. ...+..+..+..+|.. +.. +..+. ...++++...+......--.-.++.++
T Consensus 493 ~K~~~~~~Ik~~~~~aLlrl~~-~q~e~akl~~~~aL~~~i~f-~~~~~----~~v~~~~~s~~~~d~~~~en~E~L~al 566 (748)
T KOG4151|consen 493 EKYERAKKIKPGGYEALLRLGQ-QQFEEAKLKWYHALAGKIDF-PGERS----YEVVKPLDSALHNDEKGLENFEALEAL 566 (748)
T ss_pred hHHhcCccccccHHHHHHHHHH-HhchHHHHHHHHHHhhhcCC-CCCch----hhhhhhhcchhhhhHHHHHHHHHHHHh
Confidence 4445677888999999998876 4455677778888872 111 11111 234566666653311111223466799
Q ss_pred HHHhC-CchhHHHHHHcChHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchhhhhcchhhHHHHHh-CCcHHHHHHhhcC
Q 007520 456 ANLCG-NEKLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLME-DSALEWLIANSKT 533 (600)
Q Consensus 456 ~nLa~-~~e~r~~i~~~G~i~~Lv~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~q~~~~~r~~l~e-~g~l~~Lv~Ll~s 533 (600)
.||++ +...+..+...-+++.+-.++...++..+..++..+.||..++ .-....+.+ ...++....++..
T Consensus 567 tnLas~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~--------~~~e~si~e~~~~l~~w~~~~e~ 638 (748)
T KOG4151|consen 567 TNLASISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSP--------LLYERSIVEYKDRLKLWNLNLEV 638 (748)
T ss_pred hcccCcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhH--------HHHHHHhhccccCchHHHHHHHh
Confidence 99975 4567777888777777777888999999999999999999763 233444555 4566666667777
Q ss_pred CCHHHHHHHHHHHHHhhcCc-hhHHHHH-HcccHHHHHHhhhcCChH
Q 007520 534 NSASTRRHVELALCHLAQNE-DNARDFI-SRGGAKELVQISIESSRE 578 (600)
Q Consensus 534 ~~~~v~~~Aa~aL~nLa~~~-~~~~~lv-~~G~l~~Lv~ll~~~~~~ 578 (600)
.++.....++.++..++... .++..+. -..+...++.++.+.+..
T Consensus 639 ~~E~~~lA~a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~~~~ 685 (748)
T KOG4151|consen 639 ADEKFELAGAGALAAITSVVENHCSRILELLEWLEILVRAIQDEDDE 685 (748)
T ss_pred hhhHHhhhccccccchhhcchhhhhhHHHhhcchHHHHHhhcCchhh
Confidence 88888888999888775544 3444233 345777777777766543
No 192
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=93.88 E-value=18 Score=43.11 Aligned_cols=73 Identities=21% Similarity=0.301 Sum_probs=39.3
Q ss_pred hhhhHHhhhhhh-hhhhhH---HHHHHHHH---HhHhHHHhhhhhHHHHHHHHHHHhhhhhcccchh-hHHHHHHHHHHH
Q 007520 162 MENSTYQKALAD-TTQLYE---KKIAELNK---KLEDEHACFEGAVEQLDMVKKLLSDYQNSNQGQK-EVHELCVKLKET 233 (600)
Q Consensus 162 ~~n~~~~~~l~~-~~~~~~---~~~~~l~~---~l~~e~~~~~~~~~~~~~~~~~~~~~q~~~~~~~-e~~~l~~~~~d~ 233 (600)
+||-.....|.. .+..|+ ++..+|++ .|+.+ .+..++.++.+.+++..++..++... |+..|+..+.-.
T Consensus 379 LEnrrlt~tleelqsss~Ee~~SK~leleke~KnLs~k---~e~Leeri~ql~qq~~eled~~K~L~~E~ekl~~e~~t~ 455 (1195)
T KOG4643|consen 379 LENRRLTGTLEELQSSSYEELISKHLELEKEHKNLSKK---HEILEERINQLLQQLAELEDLEKKLQFELEKLLEETSTV 455 (1195)
T ss_pred HHhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhHhHhHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566665555544 222444 44455553 24433 24566777777777777777665544 555555554444
Q ss_pred HHHH
Q 007520 234 RQLH 237 (600)
Q Consensus 234 ~~~~ 237 (600)
+.-+
T Consensus 456 ~~s~ 459 (1195)
T KOG4643|consen 456 TRSL 459 (1195)
T ss_pred HHhH
Confidence 3333
No 193
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=93.83 E-value=9.2 Score=43.86 Aligned_cols=51 Identities=27% Similarity=0.375 Sum_probs=35.0
Q ss_pred hhchHHHhHHHHHHHHHHhHHHHHHHHhhhccHHHHHHHHHHHHHH-HHHHhhhH
Q 007520 12 EFDYESLCRKLETQVDHLTAEIERKQKLRENDKCELEKLLRECQIS-YDEAKDNL 65 (600)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 65 (600)
+-+|.++.......+++|..++...+...+ .++++.+.+.... ++.....+
T Consensus 246 ~~~~~~~i~~a~~~i~~L~~~l~~l~~~~~---~~l~~~L~~q~~e~~~~~~~~~ 297 (582)
T PF09731_consen 246 ESDLNSLIAHAKERIDALQKELAELKEEEE---EELERALEEQREELLSKLREEL 297 (582)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 457888888888888888877777666666 6777777666555 44444433
No 194
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=93.79 E-value=18 Score=42.78 Aligned_cols=23 Identities=30% Similarity=0.390 Sum_probs=14.5
Q ss_pred hhhhhhhhhhhHHHHHHHHHHhH
Q 007520 168 QKALADTTQLYEKKIAELNKKLE 190 (600)
Q Consensus 168 ~~~l~~~~~~~~~~~~~l~~~l~ 190 (600)
..++...+..-+.+|+.|.+-|+
T Consensus 226 t~alq~~ie~Kd~ki~~lEr~l~ 248 (775)
T PF10174_consen 226 TEALQTVIEEKDTKIASLERMLR 248 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666667777777765544
No 195
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=93.79 E-value=8.5 Score=38.93 Aligned_cols=27 Identities=30% Similarity=0.348 Sum_probs=17.1
Q ss_pred HHHHhHHHHHHHhhhHHHHHHHHHhhh
Q 007520 107 NLVTRSEFLEKENAHLELEVEKILGEL 133 (600)
Q Consensus 107 ~l~~~~~~~~~e~~~~~~~~~~~~~~~ 133 (600)
.+...++.++.+.++++.+++++...+
T Consensus 49 ~~~~e~e~le~qv~~~e~ei~~~r~r~ 75 (239)
T COG1579 49 ALEIELEDLENQVSQLESEIQEIRERI 75 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666666666677777776654443
No 196
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=93.77 E-value=0.15 Score=45.85 Aligned_cols=71 Identities=17% Similarity=0.224 Sum_probs=58.2
Q ss_pred chhhhHhhhccCCCHHHHHHHHHHHHHHh-CCchhHHHHHHcChHHHHHHHHcCCCHHHHHHHHHHHHHhhc
Q 007520 431 GGQLLAKTASKTDDPQTLRMVAGALANLC-GNEKLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFAK 501 (600)
Q Consensus 431 ~I~~Lv~lL~~~~~~~v~~~Aa~aL~nLa-~~~e~r~~i~~~G~i~~Lv~lL~s~~~~v~~~A~~aL~nLa~ 501 (600)
.+..|+.+|..+.++.+..-||.=|+.++ ..|.++..+-+.|+=..++.+|.++|+.|+..|+.++.-|..
T Consensus 44 llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 44 LLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMV 115 (119)
T ss_dssp HHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 46678888866667788888888888887 458899888889999999999999999999999999988764
No 197
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=93.73 E-value=2.4 Score=44.61 Aligned_cols=151 Identities=21% Similarity=0.129 Sum_probs=87.1
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHhhCC---cchHHHHHHcCCHHHHHHHHccCC-CHHHHHHHHHHHHHhhcC----C
Q 007520 349 LPKILQLLTSEDPDVQIHAVKVVANLAAE---DINQEKIVEEGGLDALLLLLRTSQ-NTTILRVASGAIANLAMN----E 420 (600)
Q Consensus 349 V~~Lv~LL~s~~~~vr~~Aa~aL~nLa~~---~~~~~~iv~~G~I~~Lv~lL~~~~-~~~v~~~Al~aL~NLa~~----~ 420 (600)
++.+...++.+..+-+..|+.++.-++.. ......+++. ..|.|..++.+.. .+.++..|+.||+-++.. +
T Consensus 88 ~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei~~~-~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~ 166 (309)
T PF05004_consen 88 LDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEIFEE-LKPVLKRILTDSSASPKARAACLEALAICTFVGGSDE 166 (309)
T ss_pred HHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHHHHH-HHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCCh
Confidence 45566777777666677787877766642 2345566654 6788888887543 345556666666665542 2
Q ss_pred ccHHHHHH-hC-chhhhHh-------hhccCCCHHHHHHHHHHHHHHh-CCchhHHHHHHcChHHHHHHHHcCCCHHHHH
Q 007520 421 MNQGLIMS-RG-GGQLLAK-------TASKTDDPQTLRMVAGALANLC-GNEKLHTMLEEDGAIKALLAMVRSGNIDVIA 490 (600)
Q Consensus 421 ~~r~~I~~-~G-~I~~Lv~-------lL~~~~~~~v~~~Aa~aL~nLa-~~~e~r~~i~~~G~i~~Lv~lL~s~~~~v~~ 490 (600)
+.-...++ .. .|..... .....+++.+..+|+.+-+-|. .-+...-.-.-...++.|+.+|.+++..||.
T Consensus 167 ~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRi 246 (309)
T PF05004_consen 167 EETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVAAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRI 246 (309)
T ss_pred hHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence 22221112 10 1111110 1111234567777766555453 2233111112245789999999999999999
Q ss_pred HHHHHHHHhh
Q 007520 491 QVARGLANFA 500 (600)
Q Consensus 491 ~A~~aL~nLa 500 (600)
.|+.+|+-|-
T Consensus 247 AAGEaiAll~ 256 (309)
T PF05004_consen 247 AAGEAIALLY 256 (309)
T ss_pred HHHHHHHHHH
Confidence 9999999885
No 198
>PRK14707 hypothetical protein; Provisional
Probab=93.71 E-value=3.6 Score=52.35 Aligned_cols=282 Identities=17% Similarity=0.112 Sum_probs=153.8
Q ss_pred hHHHHHHHHhccCCCCCCccccccccccCchHHHhcccCCCCccccch-HHHH----hhcCchhHHHHHhcCCHHHHHHh
Q 007520 281 AIEYELVKLKKTAPEHDDDFEDKKPYTKDYISKGSSRFGAPMSLQKSN-PSRE----LSGQRATIAKICDEVGLPKILQL 355 (600)
Q Consensus 281 ~le~~~~~l~~~l~~l~~~~~~~~~~~~g~i~~Lv~~L~s~~~~~r~~-a~~~----L~~~~~~~~~i~e~GgV~~Lv~L 355 (600)
..+..++++..++.. .+..... +..-.+..++..+.......... ++.. ++..+..+..+ ...||..++.-
T Consensus 138 ~c~~a~a~i~~~~~~--~~~~~~~-l~~~~~~lllNafSKw~~~~~c~~aa~~la~~~~~~d~~~~~~-~~q~ia~~lNa 213 (2710)
T PRK14707 138 RCERAVARLARHLRR--EDKARQT-LNAQNISLALNAFSKWSDNPDCQAVAPRFAALVASDDRLRSAM-DAQGVATVLNA 213 (2710)
T ss_pred HHHHHHHHHHHHhcc--ccchhhh-hccccHHHHHHHhhcCCCCchHHHHHHHHHHHhcCChhhhccc-chHHHHHHHHH
Confidence 344567777766522 1111111 44445666776665543333222 2222 33344443333 55567666655
Q ss_pred h-CCCCHHHHHHHHHHHHHhhCCcchHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHH-HhhcCCccHHHHHHhCchh
Q 007520 356 L-TSEDPDVQIHAVKVVANLAAEDINQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIA-NLAMNEMNQGLIMSRGGGQ 433 (600)
Q Consensus 356 L-~s~~~~vr~~Aa~aL~nLa~~~~~~~~iv~~G~I~~Lv~lL~~~~~~~v~~~Al~aL~-NLa~~~~~r~~I~~~G~I~ 433 (600)
+ +-++..--..|+..|+.....+.....-.+.-++--.+..|..-++..+...++.+|+ .++.++..+..+-.. .+.
T Consensus 214 ~sKWp~~~~c~~aa~~la~~l~~~~~l~~~~~~q~va~~lN~lsKwp~~~~C~~a~~~lA~rl~~~~~l~~al~~q-~va 292 (2710)
T PRK14707 214 LCKWPDTPDCGNAVSALAERLADESRLRNELKPQELGNALNALSKWADTPVCAAAASALAERLVDDPGLRKALDPI-NVT 292 (2710)
T ss_pred HhcCCCChhHHHHHHHHHHHHcCcHHHHHhCChHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhhHHHHHhcCHH-HHH
Confidence 5 3344334445666666544433333233333356666666665666655555555554 444445555555444 456
Q ss_pred hhHhhhccCCCHHHHHHHHH-HHHHHhCCchhHHHHHHcChHHHHHHHHcCC-CHHHHHHHHHHHHHhhcCCchhhhhcc
Q 007520 434 LLAKTASKTDDPQTLRMVAG-ALANLCGNEKLHTMLEEDGAIKALLAMVRSG-NIDVIAQVARGLANFAKCESRAIVQGQ 511 (600)
Q Consensus 434 ~Lv~lL~~~~~~~v~~~Aa~-aL~nLa~~~e~r~~i~~~G~i~~Lv~lL~s~-~~~v~~~A~~aL~nLa~~~~~~~~q~~ 511 (600)
..++-|+..++..+...|+. +-..|..+++.+..+--.|+-..|-.+-+=+ +...+..|...-..|+ .+
T Consensus 293 nalNalSKwpd~~vc~~Aa~~la~rl~~d~~l~~~~~~~~~~~~LNalsKWpd~~~C~~Aa~~LA~rl~-~d-------- 363 (2710)
T PRK14707 293 QALNALSKWADLPVCAEAAIALAERLADDPELCKALNARGLSTALNALSKWPDNPVCAAAVSALAERLV-AD-------- 363 (2710)
T ss_pred HHHhhhhcCCCchHHHHHHHHHHHHHhccHhhhhccchHHHHHHHHHhhcCCCchhHHHHHHHHHHHhc-cC--------
Confidence 66677777778788777776 4456778888876655445444444444434 4444444444444455 43
Q ss_pred hhhHHHHHhCCcHHHHHHhhcCCCHHHHHHHHHHHH-HhhcCchhHHHHHHcccHHHHHHhhhcCC
Q 007520 512 RKGRSHLMEDSALEWLIANSKTNSASTRRHVELALC-HLAQNEDNARDFISRGGAKELVQISIESS 576 (600)
Q Consensus 512 ~~~r~~l~e~g~l~~Lv~Ll~s~~~~v~~~Aa~aL~-nLa~~~~~~~~lv~~G~l~~Lv~ll~~~~ 576 (600)
...+..+--.|+-..|-.+.+.++..+...|+.+|. .|+.+.+.+..|-..|+-..|-.+.+=++
T Consensus 364 ~~l~~~l~~q~~a~~lNalsKWp~~~~c~~aa~~LA~~l~~d~~l~~~~~~Q~van~lnalsKWPd 429 (2710)
T PRK14707 364 PELRKDLEPQGVSSVLNALSKWPDTPVCAAAASALAEHVVDDLELRKGLDPQGVSNALNALAKWPD 429 (2710)
T ss_pred HhhhcccchhHHHHHHhhhhcCCCchHHHHHHHHHHHHhccChhhhhhcchhhHHHHHHHhhcCCc
Confidence 344555544455555555777788777777777774 45667777777766666555555544444
No 199
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=93.66 E-value=18 Score=42.17 Aligned_cols=68 Identities=18% Similarity=0.269 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHHH---hhhchhHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHhhhHHHHHHHHHhhh
Q 007520 66 VTQVELLTAKIEMQQK---LRENDKYEFEKQLRESQISYDESMRNLVTRSEFLEKENAHLELEVEKILGEL 133 (600)
Q Consensus 66 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~e~~~~~~~~~~~~~~~ 133 (600)
.||+|+++..+.+... --.+|....-++|...-....+--.+++++.+.-..||..++.-++.+...+
T Consensus 140 etelE~~~srlh~le~eLsAk~~eIf~~~~~L~nk~~~lt~~~~q~~tkl~e~~~en~~le~k~~k~~e~~ 210 (1265)
T KOG0976|consen 140 EIEIENLNSRLHKLEDELSAKAHDIFMIGEDLHDKNEELNEFNMEFQTKLAEANREKKALEEKLEKFKEDL 210 (1265)
T ss_pred HHHHHhhHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6888888887765543 3344555555666655555666666778888888888888888888887776
No 200
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=93.61 E-value=20 Score=42.69 Aligned_cols=49 Identities=14% Similarity=0.178 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHhh
Q 007520 224 HELCVKLKETRQLHESAVYEVQTLKSEYKNLLEEKETMSDELQAARQRL 272 (600)
Q Consensus 224 ~~l~~~~~d~~~~~e~~~~el~~l~~~~~~l~~~~~~~~~el~~~~~~l 272 (600)
..++..+.++..+++..-++++.+...+.+.+-.......+++.+...+
T Consensus 414 ~~lq~e~~~~e~~l~~~~e~i~~l~~si~e~~~r~~~~~~~~~~~k~~~ 462 (1200)
T KOG0964|consen 414 NILQKEIEDLESELKEKLEEIKELESSINETKGRMEEFDAENTELKREL 462 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHH
Confidence 5566666667666666666655555554444444444433444444333
No 201
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=93.61 E-value=17 Score=41.69 Aligned_cols=41 Identities=20% Similarity=0.236 Sum_probs=28.4
Q ss_pred hhhhhhhhHHHHHHHHHHhHhHHHhhhhhHHHHHHHHHHHh
Q 007520 171 LADTTQLYEKKIAELNKKLEDEHACFEGAVEQLDMVKKLLS 211 (600)
Q Consensus 171 l~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~~~~~~~~~ 211 (600)
+........++|-.|-..++.|..-+..-.+.++.+...+.
T Consensus 276 ~~~~~~~i~~~Id~lYd~le~E~~Ak~~V~~~~~~l~~~l~ 316 (560)
T PF06160_consen 276 VEEENEEIEERIDQLYDILEKEVEAKKYVEKNLKELYEYLE 316 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 44566777788888888888887766666666666555555
No 202
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=93.55 E-value=1.2 Score=52.42 Aligned_cols=176 Identities=15% Similarity=0.122 Sum_probs=112.8
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHhhCCcchHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcC--CccHHHHHH
Q 007520 351 KILQLLTSEDPDVQIHAVKVVANLAAEDINQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMN--EMNQGLIMS 428 (600)
Q Consensus 351 ~Lv~LL~s~~~~vr~~Aa~aL~nLa~~~~~~~~iv~~G~I~~Lv~lL~~~~~~~v~~~Al~aL~NLa~~--~~~r~~I~~ 428 (600)
.++.-+.+++++++.+|+.||++++...-.. .+|.++..+.+.+ .-+...+..|...-.. .+....-+
T Consensus 861 ~iieaf~sp~edvksAAs~ALGsl~vgnl~~-------yLpfil~qi~sqp--k~QyLLLhSlkevi~~~svd~~~~~v- 930 (1233)
T KOG1824|consen 861 TIIEAFNSPSEDVKSAASYALGSLAVGNLPK-------YLPFILEQIESQP--KRQYLLLHSLKEVIVSASVDGLKPYV- 930 (1233)
T ss_pred HHHHHcCCChHHHHHHHHHHhhhhhcCchHh-------HHHHHHHHHhcch--HhHHHHHHHHHHHHHHhccchhhhhH-
Confidence 4458889999999999999999999743222 4777777776332 2233344444433222 12111111
Q ss_pred hCchhhhHhhhccCCCHHHHHHHHHHHHHHhCC-chhHHHHHHcChHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchhh
Q 007520 429 RGGGQLLAKTASKTDDPQTLRMVAGALANLCGN-EKLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFAKCESRAI 507 (600)
Q Consensus 429 ~G~I~~Lv~lL~~~~~~~v~~~Aa~aL~nLa~~-~e~r~~i~~~G~i~~Lv~lL~s~~~~v~~~A~~aL~nLa~~~~~~~ 507 (600)
...|..|.+-+. +....++.-++.||+.|+.. |+ ..+|.|-..+.++.+..+.-++.++.......|.-.
T Consensus 931 ~~IW~lL~k~cE-~~eegtR~vvAECLGkL~l~epe--------sLlpkL~~~~~S~a~~~rs~vvsavKfsisd~p~~i 1001 (1233)
T KOG1824|consen 931 EKIWALLFKHCE-CAEEGTRNVVAECLGKLVLIEPE--------SLLPKLKLLLRSEASNTRSSVVSAVKFSISDQPQPI 1001 (1233)
T ss_pred HHHHHHHHHhcc-cchhhhHHHHHHHhhhHHhCChH--------HHHHHHHHHhcCCCcchhhhhhheeeeeecCCCCcc
Confidence 114445554442 23335666677799988644 33 367788888899999988888888776655544311
Q ss_pred hhcchhhHHHHHhCCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCch
Q 007520 508 VQGQRKGRSHLMEDSALEWLIANSKTNSASTRRHVELALCHLAQNED 554 (600)
Q Consensus 508 ~q~~~~~r~~l~e~g~l~~Lv~Ll~s~~~~v~~~Aa~aL~nLa~~~~ 554 (600)
. ......+...+.+++++|..|++.|..++..-+.+.+
T Consensus 1002 -------d--~~lk~~ig~fl~~~~dpDl~VrrvaLvv~nSaahNKp 1039 (1233)
T KOG1824|consen 1002 -------D--PLLKQQIGDFLKLLRDPDLEVRRVALVVLNSAAHNKP 1039 (1233)
T ss_pred -------C--HHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHccCH
Confidence 0 1123456677888999999999999999988887655
No 203
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=93.53 E-value=6.9 Score=45.66 Aligned_cols=66 Identities=18% Similarity=0.259 Sum_probs=57.4
Q ss_pred HHHHHHHhHHHHHHHhhhHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHhhhhhhhhh--hhhhHHhh
Q 007520 104 SMRNLVTRSEFLEKENAHLELEVEKILGELNHQKDQNNLKREKIVQLEISLKNSKQYE--MENSTYQK 169 (600)
Q Consensus 104 ~~~~l~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~n~~~~~ 169 (600)
.|.+|+.++.-++.|+..|...+++....+.+.++.-..+.+++..|-..++..+..+ .|+..++.
T Consensus 266 EiqKL~qQL~qve~EK~~L~~~L~e~Q~qLe~a~~als~q~eki~~L~e~l~aL~~l~~~ke~~~~~d 333 (717)
T PF09730_consen 266 EIQKLKQQLLQVEREKSSLLSNLQESQKQLEHAQGALSEQQEKINRLTEQLDALRKLQEDKEQQSAED 333 (717)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhhhhhh
Confidence 5889999999999999999999999999999999999999999999999998888754 44443333
No 204
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.47 E-value=19 Score=41.86 Aligned_cols=31 Identities=23% Similarity=0.336 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007520 224 HELCVKLKETRQLHESAVYEVQTLKSEYKNL 254 (600)
Q Consensus 224 ~~l~~~~~d~~~~~e~~~~el~~l~~~~~~l 254 (600)
.+++.++.++--+.+|.-.|+.....++.+|
T Consensus 545 q~ikdqldelskE~esk~~eidi~n~qlkel 575 (1118)
T KOG1029|consen 545 QAIKDQLDELSKETESKLNEIDIFNNQLKEL 575 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 4455555555556666656655555555433
No 205
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=93.46 E-value=0.091 Score=57.06 Aligned_cols=178 Identities=13% Similarity=0.107 Sum_probs=103.5
Q ss_pred HHHHHHHHHHHhhcCCccHHHHHH-hCchhhhHhhhccCCCHHHHHHHHHHHHHHh-----CCchhHHHHHH-cC-hHHH
Q 007520 405 ILRVASGAIANLAMNEMNQGLIMS-RGGGQLLAKTASKTDDPQTLRMVAGALANLC-----GNEKLHTMLEE-DG-AIKA 476 (600)
Q Consensus 405 v~~~Al~aL~NLa~~~~~r~~I~~-~G~I~~Lv~lL~~~~~~~v~~~Aa~aL~nLa-----~~~e~r~~i~~-~G-~i~~ 476 (600)
++..|.+++.-+..++..+....- ..+...+...+.+ ..-..+..++|++.|++ +-|..+..-.. .| .+..
T Consensus 407 v~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d-~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~ll~~ 485 (728)
T KOG4535|consen 407 VKAAASRALGVYVLHPCLRQDVIFVADAANAILMSLED-KSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGLLLLK 485 (728)
T ss_pred HHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhh-HhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHHHHHH
Confidence 455566666666667766654433 4455666666633 34578889999999996 22332221111 11 2223
Q ss_pred HHHHH---cCCCHHHHHHHHHHHHHhhcCCchhhhhcchhhHHHHHhCCcHHHHHH-hhcCCCHHHHHHHHHHHHHhhcC
Q 007520 477 LLAMV---RSGNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIA-NSKTNSASTRRHVELALCHLAQN 552 (600)
Q Consensus 477 Lv~lL---~s~~~~v~~~A~~aL~nLa~~~~~~~~q~~~~~r~~l~e~g~l~~Lv~-Ll~s~~~~v~~~Aa~aL~nLa~~ 552 (600)
++... ...+..|+.++.++|.|+..--. .... ...+ ....|.+..+.. ....+...|+.++|.++.||..+
T Consensus 486 ~~~~A~~~~Ad~dkV~~navraLgnllQvlq-~i~~--~~~~--e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn 560 (728)
T KOG4535|consen 486 MLRSAIEASADKDKVKSNAVRALGNLLQFLQ-PIEK--PTFA--EIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKN 560 (728)
T ss_pred HHHHHHHhhhhhhhhhhHHHHHHhhHHHHHH-Hhhh--ccHH--HHHHHHHHhcccceecccccccchHHHHHHHHhhcC
Confidence 33332 24667899999999999974210 0000 0011 111223332222 33446788999999999999988
Q ss_pred chh--HHHHHHcccHHHHHHhhhcCChHHHHHHHHHHH
Q 007520 553 EDN--ARDFISRGGAKELVQISIESSREDIRNLAKKTM 588 (600)
Q Consensus 553 ~~~--~~~lv~~G~l~~Lv~ll~~~~~~~ir~~A~~~L 588 (600)
+.. ...-...-+.+.|+.++.++..-.+|-.|..+|
T Consensus 561 ~a~~lq~~~wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL 598 (728)
T KOG4535|consen 561 PALPLQTAPWASQAFNALTSLVTSCKNFKVRIRAAAAL 598 (728)
T ss_pred ccccccCCCchHHHHHHHHHHHHHhccceEeehhhhhh
Confidence 764 222234557788899988877666666655554
No 206
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=93.34 E-value=18 Score=41.37 Aligned_cols=141 Identities=22% Similarity=0.258 Sum_probs=70.8
Q ss_pred hHHHHHHHHHHhHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH---HHhhhchhHHHHHHHH
Q 007520 19 CRKLETQVDHLTAEIERKQKLRENDKCELEKLLRECQISYDEAKDNLVTQVELLTAKIEMQ---QKLRENDKYEFEKQLR 95 (600)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 95 (600)
-.|+..++.+|-.|-+|-+..+. .|.|.||.+.|+ |+++++.+..| -.+...++.+||...+
T Consensus 490 ~~K~ge~i~~L~sE~~~lk~il~-~Kee~Ek~~~E~--------------I~k~~ae~~rq~~~~~~sr~~~~~le~~~~ 554 (961)
T KOG4673|consen 490 EEKKGELITKLQSEENKLKSILR-DKEETEKLLQET--------------IEKHQAELTRQKDYYSNSRALAAALEAQAL 554 (961)
T ss_pred HHHhhhHHHHHHHHHHHHHHHhh-hHHHHHHHHHHH--------------HHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 33444444444445444444332 455555555554 33333333333 2344457788888888
Q ss_pred HHHhhhHHHHHHH--HHhHH--HHHHHhhhHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHhhhhhhhhhhhhhHHhhhh
Q 007520 96 ESQISYDESMRNL--VTRSE--FLEKENAHLELEVEKILGELNHQKDQNNLKREKIVQLEISLKNSKQYEMENSTYQKAL 171 (600)
Q Consensus 96 ~~~~~~~~~~~~l--~~~~~--~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l 171 (600)
-.|-.+++-+.-| .++++ .++.+-.-|-.-+.+|+..|.. -..++
T Consensus 555 a~qat~d~a~~Dlqk~nrlkQdear~~~~~lvqqv~dLR~~L~~-------------------------------~Eq~a 603 (961)
T KOG4673|consen 555 AEQATNDEARSDLQKENRLKQDEARERESMLVQQVEDLRQTLSK-------------------------------KEQQA 603 (961)
T ss_pred HHHHhhhhhhhhHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHH-------------------------------HHHHH
Confidence 8888777777633 33333 3333333344444444443321 12233
Q ss_pred hhhhhhhHHHHHHHHHHhHhHHHhhhhhHHHHHH
Q 007520 172 ADTTQLYEKKIAELNKKLEDEHACFEGAVEQLDM 205 (600)
Q Consensus 172 ~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~~~ 205 (600)
+..-++|-.+|.+|+..|+---.|.+....++..
T Consensus 604 arrEd~~R~Ei~~LqrRlqaaE~R~eel~q~v~~ 637 (961)
T KOG4673|consen 604 ARREDMFRGEIEDLQRRLQAAERRCEELIQQVPE 637 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 4455667777777777766544444444444433
No 207
>PRK09039 hypothetical protein; Validated
Probab=93.31 E-value=5.4 Score=42.68 Aligned_cols=68 Identities=18% Similarity=0.210 Sum_probs=47.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHhhhHHHHhhhhHHHHHHHH
Q 007520 222 EVHELCVKLKETRQLHESAVYEVQTLKSEYKNLLEEKETMSDELQAARQRLLVEEKQRKAIEYELVKL 289 (600)
Q Consensus 222 e~~~l~~~~~d~~~~~e~~~~el~~l~~~~~~l~~~~~~~~~el~~~~~~l~~e~~~~~~le~~~~~l 289 (600)
.+..+...+......+....+++..|+.+++.|+.+.+.+..+|.....+..+-..+..+++..+...
T Consensus 117 ~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a 184 (343)
T PRK09039 117 RAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVA 184 (343)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666677777777777777777778888888888888887777777666665555566666444443
No 208
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=93.28 E-value=19 Score=41.33 Aligned_cols=22 Identities=27% Similarity=0.537 Sum_probs=13.0
Q ss_pred hhchHHHhHHHHHHHHHHhHHH
Q 007520 12 EFDYESLCRKLETQVDHLTAEI 33 (600)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~ 33 (600)
-|.|-.-...||.+|+.+-.+.
T Consensus 160 ~~~~G~a~~~le~~l~~~e~~f 181 (569)
T PRK04778 160 RFSFGPALDELEKQLENLEEEF 181 (569)
T ss_pred CccccchHHHHHHHHHHHHHHH
Confidence 3556666666677776664333
No 209
>PRK14707 hypothetical protein; Provisional
Probab=93.26 E-value=4.2 Score=51.82 Aligned_cols=264 Identities=17% Similarity=0.073 Sum_probs=153.7
Q ss_pred cccCchHHHhcccCCCCc-cccchHHHHh---hcCchhHHHHHhcCCHHHHHHhh-CCCCHHHHHHHHHHHHH-hhCCcc
Q 007520 306 YTKDYISKGSSRFGAPMS-LQKSNPSREL---SGQRATIAKICDEVGLPKILQLL-TSEDPDVQIHAVKVVAN-LAAEDI 379 (600)
Q Consensus 306 ~~~g~i~~Lv~~L~s~~~-~~r~~a~~~L---~~~~~~~~~i~e~GgV~~Lv~LL-~s~~~~vr~~Aa~aL~n-La~~~~ 379 (600)
++..+|..++..+..... .....++..+ -.++.....-+...||-..+..| +-++..+-..|+.+|+. ++.++.
T Consensus 202 ~~~q~ia~~lNa~sKWp~~~~c~~aa~~la~~l~~~~~l~~~~~~q~va~~lN~lsKwp~~~~C~~a~~~lA~rl~~~~~ 281 (2710)
T PRK14707 202 MDAQGVATVLNALCKWPDTPDCGNAVSALAERLADESRLRNELKPQELGNALNALSKWADTPVCAAAASALAERLVDDPG 281 (2710)
T ss_pred cchHHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCcHHHHHhCChHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhhHH
Confidence 666677777776665532 2222333332 22344444445555676666555 45555555666666664 554444
Q ss_pred hHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHH-HHhhcCCccHHHHHHhCchhhhHhhhccCCCHHHHHHHHHHH-HH
Q 007520 380 NQEKIVEEGGLDALLLLLRTSQNTTILRVASGAI-ANLAMNEMNQGLIMSRGGGQLLAKTASKTDDPQTLRMVAGAL-AN 457 (600)
Q Consensus 380 ~~~~iv~~G~I~~Lv~lL~~~~~~~v~~~Al~aL-~NLa~~~~~r~~I~~~G~I~~Lv~lL~~~~~~~v~~~Aa~aL-~n 457 (600)
-+..+-.. .+.-.+..|..-++..+...|+..| ..|...+..+..+-.. ++..+++.|+..++..+.+.|+.+| ..
T Consensus 282 l~~al~~q-~vanalNalSKwpd~~vc~~Aa~~la~rl~~d~~l~~~~~~~-~~~~~LNalsKWpd~~~C~~Aa~~LA~r 359 (2710)
T PRK14707 282 LRKALDPI-NVTQALNALSKWADLPVCAEAAIALAERLADDPELCKALNAR-GLSTALNALSKWPDNPVCAAAVSALAER 359 (2710)
T ss_pred HHHhcCHH-HHHHHHhhhhcCCCchHHHHHHHHHHHHHhccHhhhhccchH-HHHHHHHHhhcCCCchhHHHHHHHHHHH
Confidence 44333322 3444555565556665555544444 4455556666554444 5667778887777777777777644 46
Q ss_pred HhCCchhHHHHHHcChHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchhhhhcchhhHHHHHhCCcHHHHHHhhcCCCHH
Q 007520 458 LCGNEKLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSKTNSAS 537 (600)
Q Consensus 458 La~~~e~r~~i~~~G~i~~Lv~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~q~~~~~r~~l~e~g~l~~Lv~Ll~s~~~~ 537 (600)
|+.+++.+..+--.|+-..|-.+-+=++..+-..|+.+|+.=...+ ...+..|--.|+-..|-.+.+.++..
T Consensus 360 l~~d~~l~~~l~~q~~a~~lNalsKWp~~~~c~~aa~~LA~~l~~d--------~~l~~~~~~Q~van~lnalsKWPd~~ 431 (2710)
T PRK14707 360 LVADPELRKDLEPQGVSSVLNALSKWPDTPVCAAAASALAEHVVDD--------LELRKGLDPQGVSNALNALAKWPDLP 431 (2710)
T ss_pred hccCHhhhcccchhHHHHHHhhhhcCCCchHHHHHHHHHHHHhccC--------hhhhhhcchhhHHHHHHHhhcCCcch
Confidence 7788888887765555444444444344444555555555444354 44566665566666777788888888
Q ss_pred HHHHHHHHHHH-hhcCchhHHHHHHcccHHHHHHhhhcCChHH
Q 007520 538 TRRHVELALCH-LAQNEDNARDFISRGGAKELVQISIESSRED 579 (600)
Q Consensus 538 v~~~Aa~aL~n-La~~~~~~~~lv~~G~l~~Lv~ll~~~~~~~ 579 (600)
++..++.+|.- ++.+.+.++.|--.++...|-.+.+=++.+.
T Consensus 432 ~C~~aa~~lA~~la~d~~l~~~~~p~~va~~LnalSKWPd~p~ 474 (2710)
T PRK14707 432 ICGQAVSALAGRLAHDTELCKALDPINVTQALDALSKWPDTPI 474 (2710)
T ss_pred hHHHHHHHHHHHHhccHHHHhhcChHHHHHHHHHhhcCCCChh
Confidence 88887777754 4667777777666655555555555455443
No 210
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=93.24 E-value=3.8 Score=44.99 Aligned_cols=161 Identities=16% Similarity=0.100 Sum_probs=101.5
Q ss_pred hhHHHHHhcCCHHHHHHhhCCC-------CHHHHHHHHHHHHHhhCCcch--HHHHHHcCCHHHHHHHHccCCCHH----
Q 007520 338 ATIAKICDEVGLPKILQLLTSE-------DPDVQIHAVKVVANLAAEDIN--QEKIVEEGGLDALLLLLRTSQNTT---- 404 (600)
Q Consensus 338 ~~~~~i~e~GgV~~Lv~LL~s~-------~~~vr~~Aa~aL~nLa~~~~~--~~~iv~~G~I~~Lv~lL~~~~~~~---- 404 (600)
.+++.++++-|.+-+=++|.+. +...+..++.+|+-.+..|+. ...+++. ||.|+.++....+++
T Consensus 47 ~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~pElAsh~~~v~~--IP~llev~~~~~d~d~e~~ 124 (698)
T KOG2611|consen 47 LNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVPELASHEEMVSR--IPLLLEVMSKGIDTDYEDN 124 (698)
T ss_pred hhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCChhhccCHHHHHh--hhHHHHHHHhcCCCchhhh
Confidence 3666799999988888888532 334566677777777776664 4556654 899999997554443
Q ss_pred --HHHHHHHHHHHhhcCCccHHHHHHhCchhhhHhhhccCCCHHHHHHHHHHHHHHh-----CCchhHHHHHHcChHHHH
Q 007520 405 --ILRVASGAIANLAMNEMNQGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLC-----GNEKLHTMLEEDGAIKAL 477 (600)
Q Consensus 405 --v~~~Al~aL~NLa~~~~~r~~I~~~G~I~~Lv~lL~~~~~~~v~~~Aa~aL~nLa-----~~~e~r~~i~~~G~i~~L 477 (600)
+...+-.+|...+.++.....++..|+++.+.++-.- .+...-...+-.+.-+. ..++.-..+.. .|..+
T Consensus 125 ~~m~~d~Y~cL~~Va~~e~G~~~Lia~G~~~~~~Q~y~~-~~~~~d~alal~Vlll~~~~~~cw~e~~~~fla--li~~v 201 (698)
T KOG2611|consen 125 LIMLEDCYECLYLVATAEAGLMTLIASGGLRVIAQMYEL-PDGSHDMALALKVLLLLVSKLDCWSETIERFLA--LIAAV 201 (698)
T ss_pred HHHHHHHHHHHHHHhcCCchhHHHHhcCchHHHHHHHhC-CCCchhHHHHHHHHHHHHHhcccCcCCHHHHHH--HHHHH
Confidence 6777999999999999999999999999999977532 22222222222222121 12222222221 13333
Q ss_pred HHHHcCCCHHHHHHHHHHHHHhhcCC
Q 007520 478 LAMVRSGNIDVIAQVARGLANFAKCE 503 (600)
Q Consensus 478 v~lL~s~~~~v~~~A~~aL~nLa~~~ 503 (600)
..-+...+.......|..|..+-...
T Consensus 202 a~df~~~~~a~KfElc~lL~~vl~~~ 227 (698)
T KOG2611|consen 202 ARDFAVLHNALKFELCHLLSAVLSSE 227 (698)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHhCC
Confidence 33334455566778888888665443
No 211
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=93.22 E-value=2 Score=41.24 Aligned_cols=91 Identities=14% Similarity=0.173 Sum_probs=70.4
Q ss_pred CHHHHHHHHHHHHHhhcC-CccHHHHHHhCchhhhHhhhccCCCHHHHHHHHHHHHHHhCCchhHHHHHHcChH-HHHHH
Q 007520 402 NTTILRVASGAIANLAMN-EMNQGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLCGNEKLHTMLEEDGAI-KALLA 479 (600)
Q Consensus 402 ~~~v~~~Al~aL~NLa~~-~~~r~~I~~~G~I~~Lv~lL~~~~~~~v~~~Aa~aL~nLa~~~e~r~~i~~~G~i-~~Lv~ 479 (600)
++.++.+++.+++-|+.. |. +++. .++.+...|.+ ++|.+++.|+.+|..|...+-.+. .|-+ ..++.
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~----~ve~-~~~~l~~~L~D-~~~~VR~~al~~Ls~Li~~d~ik~----k~~l~~~~l~ 70 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPN----LVEP-YLPNLYKCLRD-EDPLVRKTALLVLSHLILEDMIKV----KGQLFSRILK 70 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcH----HHHh-HHHHHHHHHCC-CCHHHHHHHHHHHHHHHHcCceee----hhhhhHHHHH
Confidence 467888999999999876 33 3333 57788888854 789999999999999976543332 2333 67777
Q ss_pred HHcCCCHHHHHHHHHHHHHhhcC
Q 007520 480 MVRSGNIDVIAQVARGLANFAKC 502 (600)
Q Consensus 480 lL~s~~~~v~~~A~~aL~nLa~~ 502 (600)
++.++++.|+..|..++..+...
T Consensus 71 ~l~D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 71 LLVDENPEIRSLARSFFSELLKK 93 (178)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHh
Confidence 88999999999999999999865
No 212
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=93.20 E-value=19 Score=41.23 Aligned_cols=35 Identities=26% Similarity=0.381 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHhhhH
Q 007520 88 YEFEKQLRESQISYDESMRNLVTRSEFLEKENAHL 122 (600)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~e~~~~ 122 (600)
+.+-|.+...+-+|-.++..|+.++++++.+-...
T Consensus 150 ~~~rk~ll~~~~~~G~a~~~le~~l~~~e~~f~~f 184 (569)
T PRK04778 150 RELRKSLLANRFSFGPALDELEKQLENLEEEFSQF 184 (569)
T ss_pred HHHHHHHHhcCccccchHHHHHHHHHHHHHHHHHH
Confidence 45666666677777777777777777555544433
No 213
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.06 E-value=1.6 Score=50.44 Aligned_cols=164 Identities=20% Similarity=0.243 Sum_probs=107.1
Q ss_pred HhhCCCCHHHHHHHHHHHHHhhCCcchHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcCCccHHHHHHhCchh
Q 007520 354 QLLTSEDPDVQIHAVKVVANLAAEDINQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMNEMNQGLIMSRGGGQ 433 (600)
Q Consensus 354 ~LL~s~~~~vr~~Aa~aL~nLa~~~~~~~~iv~~G~I~~Lv~lL~~~~~~~v~~~Al~aL~NLa~~~~~r~~I~~~G~I~ 433 (600)
.+|.|.++.|.-.+|.+.+.++-...+ .+.+.+|+.+|+. +..++...+..+..++.- ..+.+.
T Consensus 294 pLl~S~n~sVVmA~aql~y~lAP~~~~------~~i~kaLvrLLrs--~~~vqyvvL~nIa~~s~~--------~~~lF~ 357 (968)
T KOG1060|consen 294 PLLQSRNPSVVMAVAQLFYHLAPKNQV------TKIAKALVRLLRS--NREVQYVVLQNIATISIK--------RPTLFE 357 (968)
T ss_pred HHHhcCCcHHHHHHHhHHHhhCCHHHH------HHHHHHHHHHHhc--CCcchhhhHHHHHHHHhc--------chhhhh
Confidence 566788999999999999998853221 1247889999984 344566666666655543 112222
Q ss_pred -hhHhhhccCCCH-HHHHHHHHHHHHHhCCchhHHHHHHcChHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchhhhhcc
Q 007520 434 -LLAKTASKTDDP-QTLRMVAGALANLCGNEKLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFAKCESRAIVQGQ 511 (600)
Q Consensus 434 -~Lv~lL~~~~~~-~v~~~Aa~aL~nLa~~~e~r~~i~~~G~i~~Lv~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~q~~ 511 (600)
.+-..+-.+.|| .+...=+.+|.+|+....... .++-+...+++.+-.+...+..+|+.++....
T Consensus 358 P~lKsFfv~ssDp~~vk~lKleiLs~La~esni~~------ILrE~q~YI~s~d~~faa~aV~AiGrCA~~~~------- 424 (968)
T KOG1060|consen 358 PHLKSFFVRSSDPTQVKILKLEILSNLANESNISE------ILRELQTYIKSSDRSFAAAAVKAIGRCASRIG------- 424 (968)
T ss_pred hhhhceEeecCCHHHHHHHHHHHHHHHhhhccHHH------HHHHHHHHHhcCchhHHHHHHHHHHHHHHhhC-------
Confidence 233333234455 444455568888876655544 33446666777776777777788877765421
Q ss_pred hhhHHHHHhCCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcC
Q 007520 512 RKGRSHLMEDSALEWLIANSKTNSASTRRHVELALCHLAQN 552 (600)
Q Consensus 512 ~~~r~~l~e~g~l~~Lv~Ll~s~~~~v~~~Aa~aL~nLa~~ 552 (600)
=+...++.+|+.++.+.+..|...++..+..|...
T Consensus 425 ------sv~~tCL~gLv~Llsshde~Vv~eaV~vIk~Llq~ 459 (968)
T KOG1060|consen 425 ------SVTDTCLNGLVQLLSSHDELVVAEAVVVIKRLLQK 459 (968)
T ss_pred ------chhhHHHHHHHHHHhcccchhHHHHHHHHHHHHhh
Confidence 12356888999999999999999988888888653
No 214
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=93.01 E-value=0.31 Score=40.05 Aligned_cols=68 Identities=18% Similarity=0.092 Sum_probs=59.6
Q ss_pred HHHHHHHHHHhhcCCccHHHHHHhCchhhhHhhhccCCCHHHHHHHHHHHHHHhCCchhHHHHHHcCh
Q 007520 406 LRVASGAIANLAMNEMNQGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLCGNEKLHTMLEEDGA 473 (600)
Q Consensus 406 ~~~Al~aL~NLa~~~~~r~~I~~~G~I~~Lv~lL~~~~~~~v~~~Aa~aL~nLa~~~e~r~~i~~~G~ 473 (600)
.+.|++|+.+++..+.....+.+.+.++.++++...++...++-.+..+|.-++...+.+..+.+.|.
T Consensus 4 lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~~G~~~L~~~gW 71 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTEEGAEILDELGW 71 (73)
T ss_pred HHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCHHHHHHHHHcCC
Confidence 46799999999999888888888899999999998877778888888899999999999988887774
No 215
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=92.96 E-value=14 Score=40.09 Aligned_cols=95 Identities=14% Similarity=0.257 Sum_probs=71.3
Q ss_pred CHHHHHHHHccCC--CHHHHHHHHHHHHHhhcC-CccHHHHHHhCchhhhHhhhc-c--CCCHHHHHHHHHHHHHHhCCc
Q 007520 389 GLDALLLLLRTSQ--NTTILRVASGAIANLAMN-EMNQGLIMSRGGGQLLAKTAS-K--TDDPQTLRMVAGALANLCGNE 462 (600)
Q Consensus 389 ~I~~Lv~lL~~~~--~~~v~~~Al~aL~NLa~~-~~~r~~I~~~G~I~~Lv~lL~-~--~~~~~v~~~Aa~aL~nLa~~~ 462 (600)
.+..|..++.... -..+-..|+.++..+..+ |..-..+.+.|.++.++..+. . .++.++....-.+|..||-+.
T Consensus 107 L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~AicLN~ 186 (379)
T PF06025_consen 107 LLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTSLPNVLSAICLNN 186 (379)
T ss_pred HHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHHHHHHHhHHhcCH
Confidence 3555566665321 245777788899999988 555666667888888888876 2 245567777777999999999
Q ss_pred hhHHHHHHcChHHHHHHHHcC
Q 007520 463 KLHTMLEEDGAIKALLAMVRS 483 (600)
Q Consensus 463 e~r~~i~~~G~i~~Lv~lL~s 483 (600)
.+...+.+.+.++.++.++.+
T Consensus 187 ~Gl~~~~~~~~l~~~f~if~s 207 (379)
T PF06025_consen 187 RGLEKVKSSNPLDKLFEIFTS 207 (379)
T ss_pred HHHHHHHhcChHHHHHHHhCC
Confidence 999999999999998888754
No 216
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=92.87 E-value=3.3 Score=46.37 Aligned_cols=217 Identities=12% Similarity=0.091 Sum_probs=128.4
Q ss_pred ccCCC-CccccchHHHHhhc-CchhHHHHHhcCC----HHHHHHhhCCCCHHHHHHHHHHHHHhhC-CcchHHHHHHcCC
Q 007520 317 RFGAP-MSLQKSNPSRELSG-QRATIAKICDEVG----LPKILQLLTSEDPDVQIHAVKVVANLAA-EDINQEKIVEEGG 389 (600)
Q Consensus 317 ~L~s~-~~~~r~~a~~~L~~-~~~~~~~i~e~Gg----V~~Lv~LL~s~~~~vr~~Aa~aL~nLa~-~~~~~~~iv~~G~ 389 (600)
.++.+ +..+|..++++|.. -.-.+..+.-.+- ++..+..-..++.+++..|..||..+.. +-.....+.+...
T Consensus 185 a~k~et~~avRLaaL~aL~dsl~fv~~nf~~E~erNy~mqvvceatq~~d~e~q~aafgCl~kim~LyY~fm~~ymE~aL 264 (858)
T COG5215 185 ALKNETTSAVRLAALKALMDSLMFVQGNFCYEEERNYFMQVVCEATQGNDEELQHAAFGCLNKIMMLYYKFMQSYMENAL 264 (858)
T ss_pred hcccCchHHHHHHHHHHHHHHHHHHHHhhcchhhhchhheeeehhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33433 45566666666322 2222233333333 3444455678899999999999998776 4445445555533
Q ss_pred HHHHHHHHccCCCHHHHHHHHHHHHHhhcCC-cc--------------HHHH--HHhCchhhhHhhhcc-CCCH-----H
Q 007520 390 LDALLLLLRTSQNTTILRVASGAIANLAMNE-MN--------------QGLI--MSRGGGQLLAKTASK-TDDP-----Q 446 (600)
Q Consensus 390 I~~Lv~lL~~~~~~~v~~~Al~aL~NLa~~~-~~--------------r~~I--~~~G~I~~Lv~lL~~-~~~~-----~ 446 (600)
.......+. +++.++...+...-..+|..+ +. ..-- .-.+++|.|+.+|.+ .+|+ .
T Consensus 265 ~alt~~~mk-s~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn 343 (858)
T COG5215 265 AALTGRFMK-SQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWN 343 (858)
T ss_pred HHHHHHHhc-CcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccc
Confidence 334445566 677777777666554555431 10 0000 013478889999865 2211 2
Q ss_pred HHHHHHHHHH---HHhCCchhHHHHHHcChHHHHHHHH----cCCCHHHHHHHHHHHHHhhcCCchhhhhcchhhHHHHH
Q 007520 447 TLRMVAGALA---NLCGNEKLHTMLEEDGAIKALLAMV----RSGNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLM 519 (600)
Q Consensus 447 v~~~Aa~aL~---nLa~~~e~r~~i~~~G~i~~Lv~lL----~s~~~~v~~~A~~aL~nLa~~~~~~~~q~~~~~r~~l~ 519 (600)
+..+|..||- .++++ ..+.+++++. ++++-.-++.|+.+++.+. ++|. ..++..++
T Consensus 344 ~smaA~sCLqlfaq~~gd----------~i~~pVl~FvEqni~~~~w~nreaavmAfGSvm-~gp~------~~~lT~~V 406 (858)
T COG5215 344 PSMAASSCLQLFAQLKGD----------KIMRPVLGFVEQNIRSESWANREAAVMAFGSVM-HGPC------EDCLTKIV 406 (858)
T ss_pred hhhhHHHHHHHHHHHhhh----------HhHHHHHHHHHHhccCchhhhHHHHHHHhhhhh-cCcc------HHHHHhhH
Confidence 3333333433 33333 2334455554 5677777889999999987 4443 33444443
Q ss_pred hCCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcC
Q 007520 520 EDSALEWLIANSKTNSASTRRHVELALCHLAQN 552 (600)
Q Consensus 520 e~g~l~~Lv~Ll~s~~~~v~~~Aa~aL~nLa~~ 552 (600)
..++|.|..++.+..-.++..++|++..++.+
T Consensus 407 -~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~ 438 (858)
T COG5215 407 -PQALPGIENEMSDSCLWVKSTTAWCFGAIADH 438 (858)
T ss_pred -HhhhHHHHHhcccceeehhhHHHHHHHHHHHH
Confidence 46889999999988889999999999998753
No 217
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=92.87 E-value=5.7 Score=36.35 Aligned_cols=65 Identities=23% Similarity=0.328 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHhhhchhHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHhhhHHHHHHHHHhhh
Q 007520 68 QVELLTAKIEMQQKLRENDKYEFEKQLRESQISYDESMRNLVTRSEFLEKENAHLELEVEKILGEL 133 (600)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~e~~~~~~~~~~~~~~~ 133 (600)
++..++..++.|......--..||.|+.+--.+ .+.+..+..++..+..+...|..+.......+
T Consensus 25 ~~~~~~~dl~~q~~~a~~Aq~~YE~El~~Ha~~-~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l 89 (132)
T PF07926_consen 25 QLQSLREDLESQAKIAQEAQQKYERELVKHAED-IKELQQLREELQELQQEINELKAEAESAKAEL 89 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444455555544433334455555544433 45555555555555555555555555544443
No 218
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=92.83 E-value=25 Score=41.57 Aligned_cols=118 Identities=18% Similarity=0.234 Sum_probs=58.6
Q ss_pred hHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHhhhHHHHHHHHHhhhhhhhhhh-hhHHHHHHHHHHh---hhhhh-hhh
Q 007520 87 KYEFEKQLRESQISYDESMRNLVTRSEFLEKENAHLELEVEKILGELNHQKDQN-NLKREKIVQLEIS---LKNSK-QYE 161 (600)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~---~~~~~-~~~ 161 (600)
|-.|+||+++ |....|.+.+|.+.--+-.|+.+++=|+.++..+-++. +.-+-..-|||+. ||..- -+-
T Consensus 315 maTldKEmAE------ERaesLQ~eve~lkEr~deletdlEILKaEmeekG~~~~~~ss~qfkqlEqqN~rLKdalVrLR 388 (1243)
T KOG0971|consen 315 MATLDKEMAE------ERAESLQQEVEALKERVDELETDLEILKAEMEEKGSDGQAASSYQFKQLEQQNARLKDALVRLR 388 (1243)
T ss_pred HHHhhHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHHHHHHHHHHHH
Confidence 4678888885 34446666666666666667777777777775554432 3333444445543 22211 011
Q ss_pred hhhhHH---hhhhhhhhhhhHHHHHHHHHHhHhHHHhhhhhHHHHHHHHHHH
Q 007520 162 MENSTY---QKALADTTQLYEKKIAELNKKLEDEHACFEGAVEQLDMVKKLL 210 (600)
Q Consensus 162 ~~n~~~---~~~l~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~~~~~~~~ 210 (600)
+-|..- -.++.+....-.+++.+|..+-|.=..+...+|..+.-+|-++
T Consensus 389 DlsA~ek~d~qK~~kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQV 440 (1243)
T KOG0971|consen 389 DLSASEKQDHQKLQKELEKKNSELEELRRQKERLSRELDQAESTIADLKEQV 440 (1243)
T ss_pred hcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 112111 2233344444555555655544444444444444444444433
No 219
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=92.75 E-value=0.85 Score=43.10 Aligned_cols=147 Identities=12% Similarity=0.103 Sum_probs=91.4
Q ss_pred chhhhHhhhcc-CCCHHHHHHHHHHHHHHhCCchhHHHHHHcChHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchhhhh
Q 007520 431 GGQLLAKTASK-TDDPQTLRMVAGALANLCGNEKLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFAKCESRAIVQ 509 (600)
Q Consensus 431 ~I~~Lv~lL~~-~~~~~v~~~Aa~aL~nLa~~~e~r~~i~~~G~i~~Lv~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~q 509 (600)
.+..++..|.. ..++.++..+.-++..+- +..+..+.+ -+-..+-..+..++.+-...+..++..|=-..|+
T Consensus 4 ~l~~lL~~L~~~~~~~~~r~~a~v~l~k~l--~~~~~~~~~-~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~d---- 76 (157)
T PF11701_consen 4 ELDTLLTSLDMLRQPEEVRSHALVILSKLL--DAAREEFKE-KISDFIESLLDEGEMDSLIIAFSALTALFPGPPD---- 76 (157)
T ss_dssp CCCHHHHHHHCTTTSCCHHHHHHHHHHHHH--HHHHHHHHH-HHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHH----
T ss_pred HHHHHHHHhcccCCCHhHHHHHHHHHHHHH--HHhHHHHHH-HHHHHHHHHHccccchhHHHHHHHHHHHhCCCHH----
Confidence 45555555533 345577777777777663 222222211 1222333334433333456677777776544433
Q ss_pred cchhhHHHHHhCCcHHHHHHhhc--CCCHHHHHHHHHHHHHhhcCchhHHHHHHcccHHHHHHhhhcCChHH-HHHHHHH
Q 007520 510 GQRKGRSHLMEDSALEWLIANSK--TNSASTRRHVELALCHLAQNEDNARDFISRGGAKELVQISIESSRED-IRNLAKK 586 (600)
Q Consensus 510 ~~~~~r~~l~e~g~l~~Lv~Ll~--s~~~~v~~~Aa~aL~nLa~~~~~~~~lv~~G~l~~Lv~ll~~~~~~~-ir~~A~~ 586 (600)
.+-..+...|.++.++.++. +.+..++..++.+|..=|.+...+..+... +++.|..+...++.+. ++..|.-
T Consensus 77 ---v~~~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d~~~r~~I~~~-~~~~L~~~~~~~~~~~~ir~~A~v 152 (157)
T PF11701_consen 77 ---VGSELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACIDKSCRTFISKN-YVSWLKELYKNSKDDSEIRVLAAV 152 (157)
T ss_dssp ---HHHHHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTSHHHHHCCHHH-CHHHHHHHTTTCC-HH-CHHHHHH
T ss_pred ---HHHHHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHccHHHHHHHHHH-HHHHHHHHHccccchHHHHHHHHH
Confidence 34556778999999999998 788888888888887777776666665555 6799999997666555 7777764
Q ss_pred HH
Q 007520 587 TM 588 (600)
Q Consensus 587 ~L 588 (600)
.|
T Consensus 153 ~L 154 (157)
T PF11701_consen 153 GL 154 (157)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 220
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=92.69 E-value=18 Score=40.78 Aligned_cols=29 Identities=28% Similarity=0.208 Sum_probs=17.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007520 222 EVHELCVKLKETRQLHESAVYEVQTLKSE 250 (600)
Q Consensus 222 e~~~l~~~~~d~~~~~e~~~~el~~l~~~ 250 (600)
|...+...+.++..+...+..++.+++..
T Consensus 340 Er~~l~r~l~~i~~~~d~l~k~vw~~~l~ 368 (581)
T KOG0995|consen 340 ERNKLKRELNKIQSELDRLSKEVWELKLE 368 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 55666777777777777665554444433
No 221
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=92.61 E-value=2.3 Score=49.95 Aligned_cols=124 Identities=26% Similarity=0.300 Sum_probs=96.8
Q ss_pred HHHHHHHHhhhccHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHhhhHHHHHHHHH
Q 007520 31 AEIERKQKLRENDKCELEKLLRECQISYDEAKDNLVTQVELLTAKIEMQQKLRENDKYEFEKQLRESQISYDESMRNLVT 110 (600)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 110 (600)
.+++-+....+.+|.+++-.+..|+..+......|. |.+..=..+++|......++..+|-++.- ..+++..++.
T Consensus 592 ~el~eelE~le~eK~~Le~~L~~~~d~lE~~~~qL~-E~E~~L~eLq~eL~~~keS~s~~E~ql~~----~~e~~e~le~ 666 (769)
T PF05911_consen 592 KELEEELEKLESEKEELEMELASCQDQLESLKNQLK-ESEQKLEELQSELESAKESNSLAETQLKA----MKESYESLET 666 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHhh
Confidence 455555666677778888877777777777777665 55555557777777776666777777653 3577789999
Q ss_pred hHHHHHHHhhhHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHhhhhhhh
Q 007520 111 RSEFLEKENAHLELEVEKILGELNHQKDQNNLKREKIVQLEISLKNSKQ 159 (600)
Q Consensus 111 ~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (600)
+...++.|...+...+..|..+|...+....+...++..||.+|.....
T Consensus 667 ~~~~~e~E~~~l~~Ki~~Le~Ele~er~~~~e~~~kc~~Le~el~r~~~ 715 (769)
T PF05911_consen 667 RLKDLEAEAEELQSKISSLEEELEKERALSEELEAKCRELEEELERMKK 715 (769)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhhc
Confidence 9999999999999999999999999999999999999998888777543
No 222
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=92.59 E-value=1.2 Score=45.55 Aligned_cols=96 Identities=15% Similarity=0.103 Sum_probs=75.8
Q ss_pred HHHHHHHHHHHHhhC-CcchHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcC-CccHHHHHHhCchhhhHhhh
Q 007520 362 DVQIHAVKVVANLAA-EDINQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMN-EMNQGLIMSRGGGQLLAKTA 439 (600)
Q Consensus 362 ~vr~~Aa~aL~nLa~-~~~~~~~iv~~G~I~~Lv~lL~~~~~~~v~~~Al~aL~NLa~~-~~~r~~I~~~G~I~~Lv~lL 439 (600)
.....|+.+|-.++- +|+.+..+....++..|+.+|.+..++.++..++.+|..+..+ +.|.+.+-+.+|+..++.++
T Consensus 106 ~li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~ll 185 (257)
T PF08045_consen 106 SLIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLL 185 (257)
T ss_pred HHHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHH
Confidence 345667788888886 8999999999999999999997677788888888888777765 99999999999999999999
Q ss_pred ccCCC-HHHHHHHHHHHHH
Q 007520 440 SKTDD-PQTLRMVAGALAN 457 (600)
Q Consensus 440 ~~~~~-~~v~~~Aa~aL~n 457 (600)
..... ..++-.++..|.-
T Consensus 186 k~~~~~~~~r~K~~EFL~f 204 (257)
T PF08045_consen 186 KSKSTDRELRLKCIEFLYF 204 (257)
T ss_pred ccccccHHHhHHHHHHHHH
Confidence 75433 3454555554443
No 223
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=92.58 E-value=22 Score=40.34 Aligned_cols=52 Identities=27% Similarity=0.282 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHhhhHHHHhhhhHHHHHHHHhc
Q 007520 239 SAVYEVQTLKSEYKNLLEEKETMSDELQAARQRLLVEEKQRKAIEYELVKLKK 291 (600)
Q Consensus 239 ~~~~el~~l~~~~~~l~~~~~~~~~el~~~~~~l~~e~~~~~~le~~~~~l~~ 291 (600)
|+..+.-..+.+++.+.+.......+|..++..| ...++-.+++.++..++.
T Consensus 307 S~~~e~e~~~~qI~~le~~l~~~~~~leel~~kL-~~~sDYeeIK~ELsiLk~ 358 (629)
T KOG0963|consen 307 SLVEEREKHKAQISALEKELKAKISELEELKEKL-NSRSDYEEIKKELSILKA 358 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhccHHHHHHHHHHHHH
Confidence 3333333344555555555555555555544433 233444555556666553
No 224
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=92.54 E-value=28 Score=41.33 Aligned_cols=51 Identities=25% Similarity=0.360 Sum_probs=35.8
Q ss_pred HHHHHhHHHHHHHhhhHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHhhhh
Q 007520 106 RNLVTRSEFLEKENAHLELEVEKILGELNHQKDQNNLKREKIVQLEISLKN 156 (600)
Q Consensus 106 ~~l~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (600)
.+...+++.+..|.+++-.||.++.-.+.......+-...++..|+-.|+.
T Consensus 360 ~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~kie~Lee~l~e 410 (775)
T PF10174_consen 360 EKKQAQIEKLQEEKSRLQGEIEDLRDMLDKKERKINVLQKKIENLEEQLRE 410 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445567777888888888887777777777777777777777766643
No 225
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=92.53 E-value=29 Score=41.56 Aligned_cols=57 Identities=23% Similarity=0.190 Sum_probs=31.8
Q ss_pred HHHHHhhhHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHhhhhhhhhhhhhhHHhhhhhh
Q 007520 114 FLEKENAHLELEVEKILGELNHQKDQNNLKREKIVQLEISLKNSKQYEMENSTYQKALAD 173 (600)
Q Consensus 114 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~ 173 (600)
.|++|+.+|..+++.|...+++-.-...+..+-.-.|-. ...+.+.|+++.++++..
T Consensus 405 eleke~KnLs~k~e~Leeri~ql~qq~~eled~~K~L~~---E~ekl~~e~~t~~~s~~r 461 (1195)
T KOG4643|consen 405 ELEKEHKNLSKKHEILEERINQLLQQLAELEDLEKKLQF---ELEKLLEETSTVTRSLSR 461 (1195)
T ss_pred HHHHHhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhHHH
Confidence 567777888888888888776655444433222222222 233444556555555443
No 226
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=92.46 E-value=23 Score=40.23 Aligned_cols=41 Identities=27% Similarity=0.381 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHhhhHHHHHH--------------HHHhHHHHHHHhhhHHHHHHH
Q 007520 88 YEFEKQLRESQISYDESMRN--------------LVTRSEFLEKENAHLELEVEK 128 (600)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~--------------l~~~~~~~~~e~~~~~~~~~~ 128 (600)
..-.+++-.....|++..-- -.+++.++++|+.+|+.....
T Consensus 213 ~~t~~el~~~~s~~dee~~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~~ql~~ 267 (629)
T KOG0963|consen 213 EDTQNELFDLKSKYDEEVAAKAAEVSLIMTELEDAQQRIVFLEREVEQLREQLAK 267 (629)
T ss_pred HhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33455666566666655432 233444566666555555443
No 227
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=92.41 E-value=33 Score=41.94 Aligned_cols=98 Identities=17% Similarity=0.194 Sum_probs=48.4
Q ss_pred hhHHHHHHHHHhHHHHHHHhhhH-----HHHHHHHHhhhhhhhhhhhh-------HHHHHHHHHHhhhhhhhhhhhhhHH
Q 007520 100 SYDESMRNLVTRSEFLEKENAHL-----ELEVEKILGELNHQKDQNNL-------KREKIVQLEISLKNSKQYEMENSTY 167 (600)
Q Consensus 100 ~~~~~~~~l~~~~~~~~~e~~~~-----~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~n~~~ 167 (600)
.|+-.++-+..+++.+..|+.++ +..|..+...+..+++.-.. +......|--.++.++ .-
T Consensus 671 ~~e~~lk~~q~~~eq~~~E~~~~~L~~~e~~~~e~~~~lseek~ar~k~e~~~~~i~~e~e~L~~d~~~~~-------~~ 743 (1317)
T KOG0612|consen 671 KLERKLKMLQNELEQENAEHHRLRLQDKEAQMKEIESKLSEEKSAREKAENLLLEIEAELEYLSNDYKQSQ-------EK 743 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHhhhhhhhc-------cc
Confidence 33344444444444444454444 45666666666555554322 2222222222222222 12
Q ss_pred hhhhhhhhhhhHHHHHHHHHHhHhHHHhhhhhHHHHH
Q 007520 168 QKALADTTQLYEKKIAELNKKLEDEHACFEGAVEQLD 204 (600)
Q Consensus 168 ~~~l~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~~ 204 (600)
...+...-+...+.+..|+-.|+.|...+.....++.
T Consensus 744 ~~~l~r~~~~~~~~vl~Lq~~LEqe~~~r~~~~~eLs 780 (1317)
T KOG0612|consen 744 LNELRRSKDQLITEVLKLQSMLEQEISKRLSLQRELK 780 (1317)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHhh
Confidence 2334445566667777777777777666555555544
No 228
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=92.41 E-value=12 Score=36.77 Aligned_cols=85 Identities=25% Similarity=0.242 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhchhHHH---HHHHHHHHhhhHHHHHHHHHhHHHHHHHhhhH
Q 007520 46 ELEKLLRECQISYDEAKDNLVTQVELLTAKIEMQQKLRENDKYEF---EKQLRESQISYDESMRNLVTRSEFLEKENAHL 122 (600)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~e~~~~ 122 (600)
++.-.+.|.+..+.++.. |..-|+.-.-.|.+ ....| ++++-..-..|.+++..|.+++-.....++.+
T Consensus 16 ~L~n~l~elq~~l~~l~~----ENk~Lk~lq~Rq~k----AL~k~e~~e~~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~ 87 (194)
T PF15619_consen 16 ELQNELAELQRKLQELRK----ENKTLKQLQKRQEK----ALQKYEDTEAELPQLLQRHNEEVRVLRERLRKSQEQEREL 87 (194)
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH----HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455566666666655 44444432222222 22444 67788888899999999999998888888888
Q ss_pred HHHHHHHHhhhhhhhh
Q 007520 123 ELEVEKILGELNHQKD 138 (600)
Q Consensus 123 ~~~~~~~~~~~~~~~~ 138 (600)
+..+++...+|..-++
T Consensus 88 ~~klk~~~~el~k~~~ 103 (194)
T PF15619_consen 88 ERKLKDKDEELLKTKD 103 (194)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8888886666654333
No 229
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.36 E-value=7.2 Score=45.38 Aligned_cols=28 Identities=21% Similarity=0.379 Sum_probs=21.3
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHhhC
Q 007520 349 LPKILQLLTSEDPDVQIHAVKVVANLAA 376 (600)
Q Consensus 349 V~~Lv~LL~s~~~~vr~~Aa~aL~nLa~ 376 (600)
.|.+..++...++.+|..|+.|...+..
T Consensus 144 apeVe~Ll~~~~~~irKKA~Lca~r~ir 171 (866)
T KOG1062|consen 144 APEVERLLQHRDPYIRKKAALCAVRFIR 171 (866)
T ss_pred hHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 4566688888888888888888776554
No 230
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.27 E-value=0.65 Score=52.48 Aligned_cols=179 Identities=12% Similarity=0.150 Sum_probs=107.3
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHhhC-CcchHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcC--------
Q 007520 349 LPKILQLLTSEDPDVQIHAVKVVANLAA-EDINQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMN-------- 419 (600)
Q Consensus 349 V~~Lv~LL~s~~~~vr~~Aa~aL~nLa~-~~~~~~~iv~~G~I~~Lv~lL~~~~~~~v~~~Al~aL~NLa~~-------- 419 (600)
...++..+...+..+|..|+++|+.+-. +++.-....+ ..++.-++. .....+.......+.-+.
T Consensus 283 F~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLd----KKlms~lRR--kr~ahkrpk~l~s~GewSsGk~~~ad 356 (823)
T KOG2259|consen 283 FSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLD----KKLMSRLRR--KRTAHKRPKALYSSGEWSSGKEWNAD 356 (823)
T ss_pred HHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHH----HHHhhhhhh--hhhcccchHHHHhcCCcccCcccccc
Confidence 5556667777777788888888876543 2222111111 112221210 001111122233333111
Q ss_pred ------CccHHHHHHhCchhhhHhhhccCCCHHHHHHHHHHHHHHhCC-chhHHHHHHcChHHHHHHHHcCCCHHHHHHH
Q 007520 420 ------EMNQGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLCGN-EKLHTMLEEDGAIKALLAMVRSGNIDVIAQV 492 (600)
Q Consensus 420 ------~~~r~~I~~~G~I~~Lv~lL~~~~~~~v~~~Aa~aL~nLa~~-~e~r~~i~~~G~i~~Lv~lL~s~~~~v~~~A 492 (600)
+..-..|+..|+-..++.-|.+ +-.+|+++|+..++.|+.+ |.... .++..|+.++.+....|+..|
T Consensus 357 vpsee~d~~~~siI~sGACGA~VhGlED-Ef~EVR~AAV~Sl~~La~ssP~FA~-----~aldfLvDMfNDE~~~VRL~a 430 (823)
T KOG2259|consen 357 VPSEEDDEEEESIIPSGACGALVHGLED-EFYEVRRAAVASLCSLATSSPGFAV-----RALDFLVDMFNDEIEVVRLKA 430 (823)
T ss_pred CchhhccccccccccccccceeeeechH-HHHHHHHHHHHHHHHHHcCCCCcHH-----HHHHHHHHHhccHHHHHHHHH
Confidence 1223456677777778877743 4448999999999999854 55443 367789999999999999999
Q ss_pred HHHHHHhhcCCchhhhhcchhhHHHHHhCCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCc
Q 007520 493 ARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSKTNSASTRRHVELALCHLAQNE 553 (600)
Q Consensus 493 ~~aL~nLa~~~~~~~~q~~~~~r~~l~e~g~l~~Lv~Ll~s~~~~v~~~Aa~aL~nLa~~~ 553 (600)
..+|..++.+- -++..-++.++.-+.+.++.+|...-..|++.-...
T Consensus 431 i~aL~~Is~~l--------------~i~eeql~~il~~L~D~s~dvRe~l~elL~~~~~~d 477 (823)
T KOG2259|consen 431 IFALTMISVHL--------------AIREEQLRQILESLEDRSVDVREALRELLKNARVSD 477 (823)
T ss_pred HHHHHHHHHHh--------------eecHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCc
Confidence 99999998551 223345666666666667777766666666554333
No 231
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=92.26 E-value=10 Score=36.01 Aligned_cols=123 Identities=19% Similarity=0.206 Sum_probs=62.0
Q ss_pred hHHHHHHHHHHhHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH-HHHHHhhhchhHHHHHHHHHH
Q 007520 19 CRKLETQVDHLTAEIERKQKLRENDKCELEKLLRECQISYDEAKDNLVTQVELLTAKI-EMQQKLRENDKYEFEKQLRES 97 (600)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 97 (600)
|.++..+|+.+..++......- |.+++..+-|+.+..++-++|. .| ++.++.- |+-.+++...
T Consensus 29 ~~~l~~EL~evk~~v~~~I~ev----D~Le~~er~aR~rL~eVS~~f~--------~ysE~dik~A----Ye~A~~lQ~~ 92 (159)
T PF05384_consen 29 YERLRKELEEVKEEVSEVIEEV----DKLEKRERQARQRLAEVSRNFD--------RYSEEDIKEA----YEEAHELQVR 92 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhhhc--------ccCHHHHHHH----HHHHHHHHHH
Confidence 3455666666655555444433 7888889999999999999885 11 1222222 2222333333
Q ss_pred HhhhHHHHHHHHHhHHHHHHHhhhHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHhhhhh
Q 007520 98 QISYDESMRNLVTRSEFLEKENAHLELEVEKILGELNHQKDQNNLKREKIVQLEISLKNS 157 (600)
Q Consensus 98 ~~~~~~~~~~l~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (600)
..-+.+.-++|-.+-..|+...++|...+++-..-++|=.-.-+.++....++-..+.+.
T Consensus 93 L~~~re~E~qLr~rRD~LErrl~~l~~tierAE~l~sqi~vvl~yL~~dl~~v~~~~e~~ 152 (159)
T PF05384_consen 93 LAMLREREKQLRERRDELERRLRNLEETIERAENLVSQIGVVLNYLSGDLQQVSEQIEDA 152 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 333444444444444444444444444444443333333333344444444433333333
No 232
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=92.18 E-value=21 Score=39.13 Aligned_cols=58 Identities=26% Similarity=0.253 Sum_probs=36.3
Q ss_pred HHHHHHHHhHHHHHHHhhhHHHHHHHHHhhh--------hhhhhhhhhHHHHHHHHHHhhhhhhhhh
Q 007520 103 ESMRNLVTRSEFLEKENAHLELEVEKILGEL--------NHQKDQNNLKREKIVQLEISLKNSKQYE 161 (600)
Q Consensus 103 ~~~~~l~~~~~~~~~e~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (600)
+=|..|++.+|.|.-.+-+.-+|..++.+.+ |.||+..--..+ ..-|..+||.++-.+
T Consensus 362 DiinkLk~niEeLIedKY~viLEKnd~~k~lqnLqe~la~tqk~LqEsr~e-KetLqlelkK~k~ny 427 (527)
T PF15066_consen 362 DIINKLKENIEELIEDKYRVILEKNDIEKTLQNLQEALANTQKHLQESRNE-KETLQLELKKIKANY 427 (527)
T ss_pred HHHHHHHHHHHHHHHhHhHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHhhhH
Confidence 6677888888888888888888877777776 444444333222 233555566555333
No 233
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=92.05 E-value=0.88 Score=46.35 Aligned_cols=164 Identities=10% Similarity=0.095 Sum_probs=108.1
Q ss_pred hhcCchhHHHHHhcCCHHHHHHhhCCC-----CHHHHHHHHHHHHHhhCC--cchHHHHHHcCCHHHHHHHHccCCCHHH
Q 007520 333 LSGQRATIAKICDEVGLPKILQLLTSE-----DPDVQIHAVKVVANLAAE--DINQEKIVEEGGLDALLLLLRTSQNTTI 405 (600)
Q Consensus 333 L~~~~~~~~~i~e~GgV~~Lv~LL~s~-----~~~vr~~Aa~aL~nLa~~--~~~~~~iv~~G~I~~Lv~lL~~~~~~~v 405 (600)
++.|++.+..++.+.-.--|..+|+.. -+.+|-.+.++++.|... ++.-..+...+.+|..+..+.. .+.-.
T Consensus 77 vAshpetr~~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~-GselS 155 (262)
T PF04078_consen 77 VASHPETRMPFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEF-GSELS 155 (262)
T ss_dssp HHH-TTTHHHHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHH-S-HHH
T ss_pred HHcChHHHHHHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHh-ccHHH
Confidence 567999999999998655556777532 256889999999999983 3445666688889999999984 46666
Q ss_pred HHHHHHHHHHhhcCCccHHHHHH--------hCchhhhHhhhccCCCHHHHHHHHHHHHHHhCCchhHHHHHHcChHHHH
Q 007520 406 LRVASGAIANLAMNEMNQGLIMS--------RGGGQLLAKTASKTDDPQTLRMVAGALANLCGNEKLHTMLEEDGAIKAL 477 (600)
Q Consensus 406 ~~~Al~aL~NLa~~~~~r~~I~~--------~G~I~~Lv~lL~~~~~~~v~~~Aa~aL~nLa~~~e~r~~i~~~G~i~~L 477 (600)
+..|...+..+-.++.+-.-+.. ..++..++..+...+++.+.+.++++-..|+.++..+..+.. ++|..
T Consensus 156 KtvAtfIlqKIL~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnprar~aL~~--~LP~~ 233 (262)
T PF04078_consen 156 KTVATFILQKILLDDVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNPRAREALRQ--CLPDQ 233 (262)
T ss_dssp HHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTSTTHHHHHHH--HS-GG
T ss_pred HHHHHHHHHHHHcchhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCHHHHHHHHH--hCcHH
Confidence 77788888888776554333322 224445555555567889999999999999999998887764 33321
Q ss_pred HH-----HHcCCCHHHHHHHHHHHHHh
Q 007520 478 LA-----MVRSGNIDVIAQVARGLANF 499 (600)
Q Consensus 478 v~-----lL~s~~~~v~~~A~~aL~nL 499 (600)
+. .+-.+|+.++..-...+.|+
T Consensus 234 Lrd~~f~~~l~~D~~~k~~l~qLl~nl 260 (262)
T PF04078_consen 234 LRDGTFSNILKDDPSTKRWLQQLLSNL 260 (262)
T ss_dssp GTSSTTTTGGCS-HHHHHHHHHHHHHT
T ss_pred HhcHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 11 11134666666555555554
No 234
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=91.93 E-value=0.39 Score=46.13 Aligned_cols=78 Identities=23% Similarity=0.345 Sum_probs=63.1
Q ss_pred HHHHHHcCCHHHHHHHHcc--------CCCHHHHHHHHHHHHHhhcCCccHHHHHH-hCchhhhHhhhccCCCHHHHHHH
Q 007520 381 QEKIVEEGGLDALLLLLRT--------SQNTTILRVASGAIANLAMNEMNQGLIMS-RGGGQLLAKTASKTDDPQTLRMV 451 (600)
Q Consensus 381 ~~~iv~~G~I~~Lv~lL~~--------~~~~~v~~~Al~aL~NLa~~~~~r~~I~~-~G~I~~Lv~lL~~~~~~~v~~~A 451 (600)
-..|++.||+..|+.+|.. ..+..+...++.||..|..++.+...++. .+++..|+..|. ++++.++..|
T Consensus 100 v~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~~~G~~~v~~~~~~v~~i~~~L~-s~~~~~r~~~ 178 (187)
T PF06371_consen 100 VQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNTKYGLEAVLSHPDSVNLIALSLD-SPNIKTRKLA 178 (187)
T ss_dssp HHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSSHHHHHHHHCSSSHHHHHHHT---TTSHHHHHHH
T ss_pred HHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHccHHHHHHHHcCcHHHHHHHHHHC-CCCHHHHHHH
Confidence 5678888999999998853 13456788899999999999888888877 889999999984 6888999999
Q ss_pred HHHHHHHh
Q 007520 452 AGALANLC 459 (600)
Q Consensus 452 a~aL~nLa 459 (600)
+.+|..+|
T Consensus 179 leiL~~lc 186 (187)
T PF06371_consen 179 LEILAALC 186 (187)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998887
No 235
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=91.90 E-value=7.2 Score=39.79 Aligned_cols=135 Identities=15% Similarity=0.133 Sum_probs=84.3
Q ss_pred HHHHHHHHHHhhCCcchHHHHHHcC--CHHHHHHHHccC---CCHHHHHHHHHHHHHhhcCCccHHHHHHhC--chhhhH
Q 007520 364 QIHAVKVVANLAAEDINQEKIVEEG--GLDALLLLLRTS---QNTTILRVASGAIANLAMNEMNQGLIMSRG--GGQLLA 436 (600)
Q Consensus 364 r~~Aa~aL~nLa~~~~~~~~iv~~G--~I~~Lv~lL~~~---~~~~v~~~Al~aL~NLa~~~~~r~~I~~~G--~I~~Lv 436 (600)
+-.+.-.++-++.++..-..+...+ +...+..++... .++..+-.++++++|+..++..+..+.... .+...+
T Consensus 80 ~fP~lDLlRl~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~~~~~~~~~~~~~i~~~~ 159 (268)
T PF08324_consen 80 RFPALDLLRLAALHPPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSHPPGRQLLLSHFDSSILELL 159 (268)
T ss_dssp -HHHHHHHHHHCCCHCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSCCCHHHHHCTHHTCHHHHC
T ss_pred chhHHhHHHHHHhCccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCCccHHHHHhcccchHHHHH
Confidence 4445555555555555544444332 234444444322 466778889999999999999999888843 343443
Q ss_pred hhhccCC---CHHHHHHHHHHHHHHhCC-------chhHHHHHHcChHHHHHHHH-c-CCCHHHHHHHHHHHHHhhcCC
Q 007520 437 KTASKTD---DPQTLRMVAGALANLCGN-------EKLHTMLEEDGAIKALLAMV-R-SGNIDVIAQVARGLANFAKCE 503 (600)
Q Consensus 437 ~lL~~~~---~~~v~~~Aa~aL~nLa~~-------~e~r~~i~~~G~i~~Lv~lL-~-s~~~~v~~~A~~aL~nLa~~~ 503 (600)
..+..+. +..++..++.++.|++.. .+.+. ..+..++..+ . ..++++...++-+|++|...+
T Consensus 160 ~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~-----~ll~~i~~~~~~~~~d~Ea~~R~LvAlGtL~~~~ 233 (268)
T PF08324_consen 160 SSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQS-----ELLSSIIEVLSREESDEEALYRLLVALGTLLSSS 233 (268)
T ss_dssp HCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHH-----HHHHHHHHHCHCCHTSHHHHHHHHHHHHHHHCCS
T ss_pred HHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHH-----HHHHHHHHHhccccCCHHHHHHHHHHHHHHhccC
Confidence 3332322 567888888999999721 12222 2344455533 2 378999999999999999664
No 236
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.84 E-value=20 Score=41.37 Aligned_cols=170 Identities=12% Similarity=0.171 Sum_probs=114.0
Q ss_pred CCHHHHHHHHHHHHHhhC--CcchHHHHHHcCCHHHHHHHHccC---CCH---HHHHHHHHHHHHhhcC-CccHHHHHHh
Q 007520 359 EDPDVQIHAVKVVANLAA--EDINQEKIVEEGGLDALLLLLRTS---QNT---TILRVASGAIANLAMN-EMNQGLIMSR 429 (600)
Q Consensus 359 ~~~~vr~~Aa~aL~nLa~--~~~~~~~iv~~G~I~~Lv~lL~~~---~~~---~v~~~Al~aL~NLa~~-~~~r~~I~~~ 429 (600)
+.|=++...+.+|.++-. +++++..+.+. +..++.-.+.. .+. ..+...+.-.-+|+.+ +.-...+..
T Consensus 253 P~PWL~vKl~rlLq~~p~~~D~~~r~~l~ev--l~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~~- 329 (938)
T KOG1077|consen 253 PAPWLQVKLLRLLQIYPTPEDPSTRARLNEV--LERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPELLSR- 329 (938)
T ss_pred CChHHHHHHHHHHHhCCCCCCchHHHHHHHH--HHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcHHHHHH-
Confidence 456677777777777644 44556555553 45555544411 111 2333344555677776 555555555
Q ss_pred CchhhhHhhhccCCCHHHHHHHHHHHHHHhCCchhHHHHHHcChHHHHHHHHc-CCCHHHHHHHHHHHHHhhcCCchhhh
Q 007520 430 GGGQLLAKTASKTDDPQTLRMVAGALANLCGNEKLHTMLEEDGAIKALLAMVR-SGNIDVIAQVARGLANFAKCESRAIV 508 (600)
Q Consensus 430 G~I~~Lv~lL~~~~~~~v~~~Aa~aL~nLa~~~e~r~~i~~~G~i~~Lv~lL~-s~~~~v~~~A~~aL~nLa~~~~~~~~ 508 (600)
++..|..+|.. ..+.++.-|...++.||........+..+ ...++..|+ ..|..++..|+..|..+|..+
T Consensus 330 -~~~~Lg~fls~-rE~NiRYLaLEsm~~L~ss~~s~davK~h--~d~Ii~sLkterDvSirrravDLLY~mcD~~----- 400 (938)
T KOG1077|consen 330 -AVNQLGQFLSH-RETNIRYLALESMCKLASSEFSIDAVKKH--QDTIINSLKTERDVSIRRRAVDLLYAMCDVS----- 400 (938)
T ss_pred -HHHHHHHHhhc-ccccchhhhHHHHHHHHhccchHHHHHHH--HHHHHHHhccccchHHHHHHHHHHHHHhchh-----
Confidence 57788888854 56688889999999998876666655554 677888887 889999999999999998432
Q ss_pred hcchhhHHHHHhCCcHHHHHHhhcCCCHHHHHHHHHHHHHhh
Q 007520 509 QGQRKGRSHLMEDSALEWLIANSKTNSASTRRHVELALCHLA 550 (600)
Q Consensus 509 q~~~~~r~~l~e~g~l~~Lv~Ll~s~~~~v~~~Aa~aL~nLa 550 (600)
+-.. .+.-|++.+.+.+..+++..+.=+.-|+
T Consensus 401 -----Nak~-----IV~elLqYL~tAd~sireeivlKvAILa 432 (938)
T KOG1077|consen 401 -----NAKQ-----IVAELLQYLETADYSIREEIVLKVAILA 432 (938)
T ss_pred -----hHHH-----HHHHHHHHHhhcchHHHHHHHHHHHHHH
Confidence 1111 3566777888888888888777776665
No 237
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=91.81 E-value=1.7 Score=48.83 Aligned_cols=89 Identities=21% Similarity=0.328 Sum_probs=67.3
Q ss_pred hhhHHHHHHHHHhHHHHHHHhhhHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHhhhhhhhhhhhhhHHhhhhhhhhhhh
Q 007520 99 ISYDESMRNLVTRSEFLEKENAHLELEVEKILGELNHQKDQNNLKREKIVQLEISLKNSKQYEMENSTYQKALADTTQLY 178 (600)
Q Consensus 99 ~~~~~~~~~l~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~ 178 (600)
..|...++.+..++|.|+.||++|..++++++.++..=++....+++...+ ..-....+...
T Consensus 418 ~~~~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~------------------~~~~~rei~~~ 479 (652)
T COG2433 418 TVYEKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVRD------------------KVRKDREIRAR 479 (652)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHhhhHHHHHH
Confidence 468889999999999999999999999999888877666666665555441 11112367788
Q ss_pred HHHHHHHHHHhHhHHHhhhhhHHHHHH
Q 007520 179 EKKIAELNKKLEDEHACFEGAVEQLDM 205 (600)
Q Consensus 179 ~~~~~~l~~~l~~e~~~~~~~~~~~~~ 205 (600)
...|..|.+.|+.+..+.+..+..++.
T Consensus 480 ~~~I~~L~~~L~e~~~~ve~L~~~l~~ 506 (652)
T COG2433 480 DRRIERLEKELEEKKKRVEELERKLAE 506 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999887776666666655
No 238
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=91.59 E-value=1 Score=53.92 Aligned_cols=140 Identities=14% Similarity=0.041 Sum_probs=105.4
Q ss_pred HHHHHHHHcc---CCCHHHHHHHHHHHHHhhcCCccHHHHHHhCchhhhHhhhccCCCHHHHHHHHHHHHHHhC-CchhH
Q 007520 390 LDALLLLLRT---SQNTTILRVASGAIANLAMNEMNQGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLCG-NEKLH 465 (600)
Q Consensus 390 I~~Lv~lL~~---~~~~~v~~~Al~aL~NLa~~~~~r~~I~~~G~I~~Lv~lL~~~~~~~v~~~Aa~aL~nLa~-~~e~r 465 (600)
.|.++.+++. ..+++++..|..||..|..-. ..+.+. .+|.|..++..+++|-++.+++.+++.|+. .|..-
T Consensus 921 ~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iS---a~fces-~l~llftimeksp~p~IRsN~VvalgDlav~fpnli 996 (1251)
T KOG0414|consen 921 APIVVEGCRNPGLFSDPELQAAATLALGKLMCIS---AEFCES-HLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPNLI 996 (1251)
T ss_pred HHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhh---HHHHHH-HHHHHHHHHhcCCCceeeecchheccchhhhccccc
Confidence 4555566642 357889999999998886431 122222 588999999888999999999999998873 34433
Q ss_pred HHHHHcChHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchhhhhcchhhHHHHHhCCcHHHHHHhhcCCCHHHHHHHHHH
Q 007520 466 TMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSKTNSASTRRHVELA 545 (600)
Q Consensus 466 ~~i~~~G~i~~Lv~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~q~~~~~r~~l~e~g~l~~Lv~Ll~s~~~~v~~~Aa~a 545 (600)
. -+-+-|...|++.++.|+..|+.+|++|-..+ .+.-.|.++.+...+.++++.|+.-|-..
T Consensus 997 e-----~~T~~Ly~rL~D~~~~vRkta~lvlshLILnd-------------miKVKGql~eMA~cl~D~~~~IsdlAk~F 1058 (1251)
T KOG0414|consen 997 E-----PWTEHLYRRLRDESPSVRKTALLVLSHLILND-------------MIKVKGQLSEMALCLEDPNAEISDLAKSF 1058 (1251)
T ss_pred c-----hhhHHHHHHhcCccHHHHHHHHHHHHHHHHhh-------------hhHhcccHHHHHHHhcCCcHHHHHHHHHH
Confidence 3 24456888899999999999999999998553 24447899999999999999999998866
Q ss_pred HHHhhc
Q 007520 546 LCHLAQ 551 (600)
Q Consensus 546 L~nLa~ 551 (600)
+-.|+.
T Consensus 1059 F~Els~ 1064 (1251)
T KOG0414|consen 1059 FKELSS 1064 (1251)
T ss_pred HHHhhh
Confidence 666654
No 239
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=91.50 E-value=42 Score=41.16 Aligned_cols=99 Identities=23% Similarity=0.176 Sum_probs=48.3
Q ss_pred HHHHHHHhHHHHHHHhhhHHHHHHHHHhhhhh---------hhhhhhhHHHHHHHHHHhhhhhhhh-hhhhhHHhhhhhh
Q 007520 104 SMRNLVTRSEFLEKENAHLELEVEKILGELNH---------QKDQNNLKREKIVQLEISLKNSKQY-EMENSTYQKALAD 173 (600)
Q Consensus 104 ~~~~l~~~~~~~~~e~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~-~~~n~~~~~~l~~ 173 (600)
......+-...++.+.+.|+...+....++.+ .....++...-..++|.+++..++. +-+|..+...
T Consensus 617 ~~~~~~e~~~~l~~~i~sL~~~~~~~~~~l~k~~el~r~~~e~~~~~ek~~~e~~~e~~lk~~q~~~eq~~~E~~~~--- 693 (1317)
T KOG0612|consen 617 QRTEISEIIAELKEEISSLEETLKAGKKELLKVEELKRENQERISDSEKEALEIKLERKLKMLQNELEQENAEHHRL--- 693 (1317)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 33333444444555555555444444444321 1222223323445556665554332 2444444433
Q ss_pred hhhhhHHHHHHHHHHhHhHHHhhhhhHHHHHH
Q 007520 174 TTQLYEKKIAELNKKLEDEHACFEGAVEQLDM 205 (600)
Q Consensus 174 ~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~~~ 205 (600)
.-+.-+-+..++.+.+-+|..-+.-++.-+-.
T Consensus 694 ~L~~~e~~~~e~~~~lseek~ar~k~e~~~~~ 725 (1317)
T KOG0612|consen 694 RLQDKEAQMKEIESKLSEEKSAREKAENLLLE 725 (1317)
T ss_pred HHhhHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 22222777888888888887776655554333
No 240
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=91.49 E-value=0.64 Score=38.17 Aligned_cols=67 Identities=9% Similarity=0.104 Sum_probs=58.8
Q ss_pred HHHHHHHHHHhhCCcchHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcCCccHHHHHHhC
Q 007520 364 QIHAVKVVANLAAEDINQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMNEMNQGLIMSRG 430 (600)
Q Consensus 364 r~~Aa~aL~nLa~~~~~~~~iv~~G~I~~Lv~lL~~~~~~~v~~~Al~aL~NLa~~~~~r~~I~~~G 430 (600)
...|.++++++++.+..-..+.+.+.++.++.+...++...+|-.|..+|.-++.+...+..+.+.|
T Consensus 4 lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~~G~~~L~~~g 70 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTEEGAEILDELG 70 (73)
T ss_pred HHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCHHHHHHHHHcC
Confidence 4678999999999887777777889999999999988888999999999999999988888877764
No 241
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=91.44 E-value=31 Score=39.53 Aligned_cols=126 Identities=21% Similarity=0.346 Sum_probs=62.8
Q ss_pred hhchHHHhHHHHHHHHHHhHHHHHHHHhhhc-cH--------------HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 007520 12 EFDYESLCRKLETQVDHLTAEIERKQKLREN-DK--------------CELEKLLRECQISYDEAKDNLVTQVELLTAKI 76 (600)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (600)
-|.|-.-+..||.+|+.+-.+-.....+-++ +. .+++..+...=.-+.+.+..|-.+++.|+.-|
T Consensus 156 ~~~~G~a~~~Le~~L~~ie~~F~~f~~lt~~GD~~~A~eil~~l~~~~~~l~~~~e~IP~l~~~l~~~~P~ql~eL~~gy 235 (560)
T PF06160_consen 156 SFSYGPAIEELEKQLENIEEEFSEFEELTENGDYLEAREILEKLKEETDELEEIMEDIPKLYKELQKEFPDQLEELKEGY 235 (560)
T ss_pred hhhhchhHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHH
Confidence 4677777888888888886554444443322 33 33444444444444444555555666666555
Q ss_pred HHHHHhh-hchhHHHHHHHHHHHhhhHHHHHHHHH-hHHHHHHHhhhHHHHHHHHHhhhhhhh
Q 007520 77 EMQQKLR-ENDKYEFEKQLRESQISYDESMRNLVT-RSEFLEKENAHLELEVEKILGELNHQK 137 (600)
Q Consensus 77 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~e~~~~~~~~~~~~~~~~~~~ 137 (600)
++-.... +=+-..+++++...+..-.+....|.+ .++..+..+..+..+|+.|-..+.+.-
T Consensus 236 ~~m~~~gy~l~~~~i~~~i~~i~~~l~~~~~~L~~l~l~~~~~~~~~i~~~Id~lYd~le~E~ 298 (560)
T PF06160_consen 236 REMEEEGYYLEHLDIEEEIEQIEEQLEEALALLKNLELDEVEEENEEIEERIDQLYDILEKEV 298 (560)
T ss_pred HHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5433321 111122333333333333333333322 344566666666666666655554433
No 242
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.43 E-value=1.1 Score=51.60 Aligned_cols=208 Identities=17% Similarity=0.184 Sum_probs=122.9
Q ss_pred cCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCcchHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcCCccHHH
Q 007520 346 EVGLPKILQLLTSEDPDVQIHAVKVVANLAAEDINQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMNEMNQGL 425 (600)
Q Consensus 346 ~GgV~~Lv~LL~s~~~~vr~~Aa~aL~nLa~~~~~~~~iv~~G~I~~Lv~lL~~~~~~~v~~~Al~aL~NLa~~~~~r~~ 425 (600)
.+++..++.=..++++.+|..|...++-+... .+.+. ...+|...++ +.++-++..++.+++++- ..+...
T Consensus 85 ~~avnt~~kD~~d~np~iR~lAlrtm~~l~v~-----~i~ey-~~~Pl~~~l~-d~~~yvRktaa~~vakl~--~~~~~~ 155 (734)
T KOG1061|consen 85 ILAVNTFLKDCEDPNPLIRALALRTMGCLRVD-----KITEY-LCDPLLKCLK-DDDPYVRKTAAVCVAKLF--DIDPDL 155 (734)
T ss_pred HhhhhhhhccCCCCCHHHHHHHhhceeeEeeh-----HHHHH-HHHHHHHhcc-CCChhHHHHHHHHHHHhh--cCChhh
Confidence 34566666666788898888777666544332 22332 5678888888 667878888887777774 345666
Q ss_pred HHHhCchhhhHhhhccCCCHHHHHHHHHHHHHHhCCchh-HHHHHHcChHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCc
Q 007520 426 IMSRGGGQLLAKTASKTDDPQTLRMVAGALANLCGNEKL-HTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFAKCES 504 (600)
Q Consensus 426 I~~~G~I~~Lv~lL~~~~~~~v~~~Aa~aL~nLa~~~e~-r~~i~~~G~i~~Lv~lL~s~~~~v~~~A~~aL~nLa~~~~ 504 (600)
..+.|.++.|..++. +.+|.|..+|+.+|..+...... -......-.+..++..+..-+.--+...+.++.+-.-.++
T Consensus 156 ~~~~gl~~~L~~ll~-D~~p~VVAnAlaaL~eI~e~~~~~~~~~l~~~~~~~lL~al~ec~EW~qi~IL~~l~~y~p~d~ 234 (734)
T KOG1061|consen 156 VEDSGLVDALKDLLS-DSNPMVVANALAALSEIHESHPSVNLLELNPQLINKLLEALNECTEWGQIFILDCLAEYVPKDS 234 (734)
T ss_pred ccccchhHHHHHHhc-CCCchHHHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHHhhhhhHHHHHHHHHhcCCCCc
Confidence 777889999999996 47889999999999988633211 0000111122233333332222223333333333322211
Q ss_pred hhhhhcchhhHHHHHhCCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCchhHHHHHHcccHHHHHHhhhcCC
Q 007520 505 RAIVQGQRKGRSHLMEDSALEWLIANSKTNSASTRRHVELALCHLAQNEDNARDFISRGGAKELVQISIESS 576 (600)
Q Consensus 505 ~~~~q~~~~~r~~l~e~g~l~~Lv~Ll~s~~~~v~~~Aa~aL~nLa~~~~~~~~lv~~G~l~~Lv~ll~~~~ 576 (600)
+.. ...+..+...+.+.++.+...+..++.++...........-....++|+-++.+.+
T Consensus 235 ----------~ea---~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~~~~~~~~~K~~~pl~tlls~~~ 293 (734)
T KOG1061|consen 235 ----------REA---EDICERLTPRLQHANSAVVLSAVKVILQLVKYLKQVNELLFKKVAPPLVTLLSSES 293 (734)
T ss_pred ----------hhH---HHHHHHhhhhhccCCcceEeehHHHHHHHHHHHHHHHHHHHHHhcccceeeecccc
Confidence 111 12455556667777777777777777777665444444444445666776665544
No 243
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=91.40 E-value=2.3 Score=35.48 Aligned_cols=72 Identities=26% Similarity=0.357 Sum_probs=61.6
Q ss_pred HHHHHHHHhHHHHHHHhhhHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHhhhhhhhhhhhhhHHhhhhhhhhhhhHHHH
Q 007520 103 ESMRNLVTRSEFLEKENAHLELEVEKILGELNHQKDQNNLKREKIVQLEISLKNSKQYEMENSTYQKALADTTQLYEKKI 182 (600)
Q Consensus 103 ~~~~~l~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~ 182 (600)
|-+..+...++++..|...+...-+++...+++|-.....++.++-+||..-..+| +.||++|
T Consensus 4 elLd~ir~Ef~~~~~e~~~~k~~~~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~kmK-----------------~~YEeEI 66 (79)
T PF08581_consen 4 ELLDAIRQEFENLSQEANSYKHQKDEYEHKINSQIQEMQQIRQKVYELEQAHRKMK-----------------QQYEEEI 66 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHH
Confidence 55667788888888888888888888888999999999999999999988876644 7789999
Q ss_pred HHHHHHhHh
Q 007520 183 AELNKKLED 191 (600)
Q Consensus 183 ~~l~~~l~~ 191 (600)
+.|+..|+.
T Consensus 67 ~rLr~eLe~ 75 (79)
T PF08581_consen 67 ARLRRELEQ 75 (79)
T ss_dssp HHHHHHHCH
T ss_pred HHHHHHHHh
Confidence 999999874
No 244
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=91.32 E-value=0.76 Score=44.12 Aligned_cols=78 Identities=17% Similarity=0.100 Sum_probs=62.3
Q ss_pred HHHHHHhCchhhhHhhhcc--------CCCHHHHHHHHHHHHHHhCCchhHHHHHH-cChHHHHHHHHcCCCHHHHHHHH
Q 007520 423 QGLIMSRGGGQLLAKTASK--------TDDPQTLRMVAGALANLCGNEKLHTMLEE-DGAIKALLAMVRSGNIDVIAQVA 493 (600)
Q Consensus 423 r~~I~~~G~I~~Lv~lL~~--------~~~~~v~~~Aa~aL~nLa~~~e~r~~i~~-~G~i~~Lv~lL~s~~~~v~~~A~ 493 (600)
-..+++.||+..|+.+|.. ..+......++.||..|+.++.+...+.. .+++..++..|.++++.++..|+
T Consensus 100 v~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~l 179 (187)
T PF06371_consen 100 VQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNTKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLAL 179 (187)
T ss_dssp HHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSSHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHH
T ss_pred HHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHccHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHH
Confidence 4567778899998888753 13456777888999999999888777765 68999999999999999999999
Q ss_pred HHHHHhh
Q 007520 494 RGLANFA 500 (600)
Q Consensus 494 ~aL~nLa 500 (600)
.+|+.+|
T Consensus 180 eiL~~lc 186 (187)
T PF06371_consen 180 EILAALC 186 (187)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999987
No 245
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=91.09 E-value=6 Score=45.44 Aligned_cols=113 Identities=16% Similarity=0.146 Sum_probs=78.0
Q ss_pred CCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCcchHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcC--CccHH
Q 007520 347 VGLPKILQLLTSEDPDVQIHAVKVVANLAAEDINQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMN--EMNQG 424 (600)
Q Consensus 347 GgV~~Lv~LL~s~~~~vr~~Aa~aL~nLa~~~~~~~~iv~~G~I~~Lv~lL~~~~~~~v~~~Al~aL~NLa~~--~~~r~ 424 (600)
|-+.-|++...+.+..||..++..|+-++.+......-+-.+....|..-+. +..+.++..|..||+.+-.. ++.+
T Consensus 85 ~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~-Drep~VRiqAv~aLsrlQ~d~~dee~- 162 (892)
T KOG2025|consen 85 GTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLK-DREPNVRIQAVLALSRLQGDPKDEEC- 162 (892)
T ss_pred HHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHh-ccCchHHHHHHHHHHHHhcCCCCCcc-
Confidence 4456666777889999999999999998875444444444445666666666 56778999999999999754 2222
Q ss_pred HHHHhCchhhhHhhhccCCCHHHHHHHHHHHHHHhCCchhHHHHH
Q 007520 425 LIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLCGNEKLHTMLE 469 (600)
Q Consensus 425 ~I~~~G~I~~Lv~lL~~~~~~~v~~~Aa~aL~nLa~~~e~r~~i~ 469 (600)
.++..+..++.+.++++|+++|. .|++.++.....|+
T Consensus 163 -----~v~n~l~~liqnDpS~EVRRaaL---snI~vdnsTlp~Iv 199 (892)
T KOG2025|consen 163 -----PVVNLLKDLIQNDPSDEVRRAAL---SNISVDNSTLPCIV 199 (892)
T ss_pred -----cHHHHHHHHHhcCCcHHHHHHHH---HhhccCcccchhHH
Confidence 24556777887878888888765 45555544444443
No 246
>PRK01156 chromosome segregation protein; Provisional
Probab=90.94 E-value=44 Score=40.44 Aligned_cols=21 Identities=10% Similarity=-0.051 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 007520 223 VHELCVKLKETRQLHESAVYE 243 (600)
Q Consensus 223 ~~~l~~~~~d~~~~~e~~~~e 243 (600)
+..+...+..+...++++..+
T Consensus 358 l~~~~~~~~~l~~~l~~~~~~ 378 (895)
T PRK01156 358 LEGYEMDYNSYLKSIESLKKK 378 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444443333
No 247
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=90.74 E-value=5.1 Score=45.40 Aligned_cols=119 Identities=14% Similarity=0.150 Sum_probs=82.3
Q ss_pred CHHHHHHHHHHHHHhhcC-CccHHHHHHhCchhhhHhhhccCCCHHHHHHHHHHHHHHhCC-chhHHHHHHcChHHHHHH
Q 007520 402 NTTILRVASGAIANLAMN-EMNQGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLCGN-EKLHTMLEEDGAIKALLA 479 (600)
Q Consensus 402 ~~~v~~~Al~aL~NLa~~-~~~r~~I~~~G~I~~Lv~lL~~~~~~~v~~~Aa~aL~nLa~~-~e~r~~i~~~G~i~~Lv~ 479 (600)
+...+..|+..+.....+ |+.... +|..++.++. ..+..++..|+..|..+|.+ ++.... ++..|++
T Consensus 35 ~~k~K~Laaq~I~kffk~FP~l~~~-----Ai~a~~DLcE-Ded~~iR~~aik~lp~~ck~~~~~v~k-----vaDvL~Q 103 (556)
T PF05918_consen 35 SPKEKRLAAQFIPKFFKHFPDLQEE-----AINAQLDLCE-DEDVQIRKQAIKGLPQLCKDNPEHVSK-----VADVLVQ 103 (556)
T ss_dssp -HHHHHHHHHHHHHHHCC-GGGHHH-----HHHHHHHHHT--SSHHHHHHHHHHGGGG--T--T-HHH-----HHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHh-cccHHHHHHHHHhHHHHHHhHHHHHhH-----HHHHHHH
Confidence 577888899999888877 887666 5667888885 47889999999999999976 566664 4458999
Q ss_pred HHcCCCHHHHHHHHHHHHHhhcCCchhhhhcchhhHHHHHhCCcHHHHHHhhc---CCCHHHHHHHHHHHH
Q 007520 480 MVRSGNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSK---TNSASTRRHVELALC 547 (600)
Q Consensus 480 lL~s~~~~v~~~A~~aL~nLa~~~~~~~~q~~~~~r~~l~e~g~l~~Lv~Ll~---s~~~~v~~~Aa~aL~ 547 (600)
+|.++++.-...+-.+|..|-..+|. +.+..|...+. ++++.+|..+...|+
T Consensus 104 lL~tdd~~E~~~v~~sL~~ll~~d~k----------------~tL~~lf~~i~~~~~~de~~Re~~lkFl~ 158 (556)
T PF05918_consen 104 LLQTDDPVELDAVKNSLMSLLKQDPK----------------GTLTGLFSQIESSKSGDEQVRERALKFLR 158 (556)
T ss_dssp HTT---HHHHHHHHHHHHHHHHH-HH----------------HHHHHHHHHHH---HS-HHHHHHHHHHHH
T ss_pred HHhcccHHHHHHHHHHHHHHHhcCcH----------------HHHHHHHHHHHhcccCchHHHHHHHHHHH
Confidence 99999988888888888888765532 34444555443 577888998887764
No 248
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=90.74 E-value=20 Score=36.24 Aligned_cols=16 Identities=25% Similarity=0.312 Sum_probs=7.0
Q ss_pred hhhhhHHHHHHHHHHh
Q 007520 174 TTQLYEKKIAELNKKL 189 (600)
Q Consensus 174 ~~~~~~~~~~~l~~~l 189 (600)
..+.+.+++.+....+
T Consensus 67 ei~~~r~r~~~~e~kl 82 (239)
T COG1579 67 EIQEIRERIKRAEEKL 82 (239)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444444444
No 249
>PRK01156 chromosome segregation protein; Provisional
Probab=90.72 E-value=46 Score=40.28 Aligned_cols=44 Identities=20% Similarity=0.259 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHH
Q 007520 224 HELCVKLKETRQLHESAVYEVQTLKSEYKNLLEEKETMSDELQA 267 (600)
Q Consensus 224 ~~l~~~~~d~~~~~e~~~~el~~l~~~~~~l~~~~~~~~~el~~ 267 (600)
..+...+..+...+..+..++..+.+.+..+.....+..+++..
T Consensus 677 ~~~~~~~~~l~~~l~~l~~~~~~l~~~i~~l~~~~~~l~eel~~ 720 (895)
T PRK01156 677 NDIEDNLKKSRKALDDAKANRARLESTIEILRTRINELSDRIND 720 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 33333333444444433333333333333333333333333333
No 250
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.72 E-value=1 Score=51.88 Aligned_cols=108 Identities=22% Similarity=0.208 Sum_probs=81.6
Q ss_pred cccCchHHHhcccCCCCccccchHHHH-hhcCchhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCcchHHHH
Q 007520 306 YTKDYISKGSSRFGAPMSLQKSNPSRE-LSGQRATIAKICDEVGLPKILQLLTSEDPDVQIHAVKVVANLAAEDINQEKI 384 (600)
Q Consensus 306 ~~~g~i~~Lv~~L~s~~~~~r~~a~~~-L~~~~~~~~~i~e~GgV~~Lv~LL~s~~~~vr~~Aa~aL~nLa~~~~~~~~i 384 (600)
...++++.++.-..++.+..|..|++. .......+. .-...+|...++++++.+|..|+-+++++-. .+...+
T Consensus 83 ~a~~avnt~~kD~~d~np~iR~lAlrtm~~l~v~~i~----ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~--~~~~~~ 156 (734)
T KOG1061|consen 83 LAILAVNTFLKDCEDPNPLIRALALRTMGCLRVDKIT----EYLCDPLLKCLKDDDPYVRKTAAVCVAKLFD--IDPDLV 156 (734)
T ss_pred HHHhhhhhhhccCCCCCHHHHHHHhhceeeEeehHHH----HHHHHHHHHhccCCChhHHHHHHHHHHHhhc--CChhhc
Confidence 345677777888888888888888877 444333322 2236788999999999999999888877654 334556
Q ss_pred HHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcCC
Q 007520 385 VEEGGLDALLLLLRTSQNTTILRVASGAIANLAMNE 420 (600)
Q Consensus 385 v~~G~I~~Lv~lL~~~~~~~v~~~Al~aL~NLa~~~ 420 (600)
...|.++.|-.++. +.++.+..+|+.+|..+....
T Consensus 157 ~~~gl~~~L~~ll~-D~~p~VVAnAlaaL~eI~e~~ 191 (734)
T KOG1061|consen 157 EDSGLVDALKDLLS-DSNPMVVANALAALSEIHESH 191 (734)
T ss_pred cccchhHHHHHHhc-CCCchHHHHHHHHHHHHHHhC
Confidence 67888888988888 778889999999999998663
No 251
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=90.71 E-value=6.9 Score=45.01 Aligned_cols=116 Identities=17% Similarity=0.155 Sum_probs=76.7
Q ss_pred cccCchHHHhcccCCCCccccchHHHH---hhcCchhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCcchHH
Q 007520 306 YTKDYISKGSSRFGAPMSLQKSNPSRE---LSGQRATIAKICDEVGLPKILQLLTSEDPDVQIHAVKVVANLAAEDINQE 382 (600)
Q Consensus 306 ~~~g~i~~Lv~~L~s~~~~~r~~a~~~---L~~~~~~~~~i~e~GgV~~Lv~LL~s~~~~vr~~Aa~aL~nLa~~~~~~~ 382 (600)
+-.|.+..++....+....+|...+.. +......+..-+-.+-...+..=+....+.||..|+.+|..+-.++.+-
T Consensus 82 lV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~de- 160 (892)
T KOG2025|consen 82 LVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDE- 160 (892)
T ss_pred HHHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCC-
Confidence 567778888888888888888776654 3333333333333333455554455778999999999999988533321
Q ss_pred HHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcCCccHHHHHH
Q 007520 383 KIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMNEMNQGLIMS 428 (600)
Q Consensus 383 ~iv~~G~I~~Lv~lL~~~~~~~v~~~Al~aL~NLa~~~~~r~~I~~ 428 (600)
+..++..++.+++.+|++++++.| |.|++.++.....|++
T Consensus 161 ---e~~v~n~l~~liqnDpS~EVRRaa---LsnI~vdnsTlp~Ive 200 (892)
T KOG2025|consen 161 ---ECPVVNLLKDLIQNDPSDEVRRAA---LSNISVDNSTLPCIVE 200 (892)
T ss_pred ---cccHHHHHHHHHhcCCcHHHHHHH---HHhhccCcccchhHHH
Confidence 223567788899999999999865 5566665554444443
No 252
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=90.69 E-value=14 Score=34.29 Aligned_cols=97 Identities=26% Similarity=0.300 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHhhhHHH
Q 007520 45 CELEKLLRECQISYDEAKDNLVTQVELLTAKIEMQQKLRENDKYEFEKQLRESQISYDESMRNLVTRSEFLEKENAHLEL 124 (600)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~e~~~~~~ 124 (600)
.+++..+.++++.-+-.+. .|+.|...+++-.... ..+..+-- +....+..|+.+++.|..+.++|+.
T Consensus 6 l~v~~kLK~~~~e~dsle~----~v~~LEreLe~~q~~~----e~~~~daE----n~k~eie~L~~el~~lt~el~~L~~ 73 (140)
T PF10473_consen 6 LHVEEKLKESESEKDSLED----HVESLERELEMSQENK----ECLILDAE----NSKAEIETLEEELEELTSELNQLEL 73 (140)
T ss_pred HHHHHHHHHHHHhHhhHHH----HHHHHHHHHHHHHHhH----HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666677666665555 6677777776655555 22222222 2234566788888888888888888
Q ss_pred HHHHHHhhhhhhhhhhhhHHHHHHHHHHh
Q 007520 125 EVEKILGELNHQKDQNNLKREKIVQLEIS 153 (600)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (600)
|+..+..+-..=......+..++..||+.
T Consensus 74 EL~~l~sEk~~L~k~lq~~q~kv~eLE~~ 102 (140)
T PF10473_consen 74 ELDTLRSEKENLDKELQKKQEKVSELESL 102 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88887766433333344445555555544
No 253
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=90.66 E-value=46 Score=40.22 Aligned_cols=51 Identities=18% Similarity=0.262 Sum_probs=27.9
Q ss_pred HHHHhhhchhHHHHHHHHHHHhhhHH---HHHHHHHhHHHHHHHhhhHHHHHHH
Q 007520 78 MQQKLRENDKYEFEKQLRESQISYDE---SMRNLVTRSEFLEKENAHLELEVEK 128 (600)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~e~~~~~~~~~~ 128 (600)
.+....+.-..+.++.+...+.+|.. .|..+++++..+.+-...++.||++
T Consensus 296 e~~~~~k~rl~~~~k~i~~~kk~~~~~~~~ie~~ek~l~av~~~~~~fekei~~ 349 (1141)
T KOG0018|consen 296 ENASHLKKRLEEIEKDIETAKKDYRALKETIERLEKELKAVEGAKEEFEKEIEE 349 (1141)
T ss_pred hhhccchhHHHHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334445666777777776653 4455555555555555555555555
No 254
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=90.53 E-value=8.7 Score=43.00 Aligned_cols=157 Identities=18% Similarity=0.222 Sum_probs=108.1
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHhhCCcchHHHHHHcCCHHHHHHHHccCCC---HHHHHHHHHHHHHhhcCCccHHH
Q 007520 349 LPKILQLLTSEDPDVQIHAVKVVANLAAEDINQEKIVEEGGLDALLLLLRTSQN---TTILRVASGAIANLAMNEMNQGL 425 (600)
Q Consensus 349 V~~Lv~LL~s~~~~vr~~Aa~aL~nLa~~~~~~~~iv~~G~I~~Lv~lL~~~~~---~~v~~~Al~aL~NLa~~~~~r~~ 425 (600)
...+...+.+++...+..|..-|..++.++.....++...|+..|..++.++.. ..+...++.++..|-.+...-..
T Consensus 85 a~~i~e~l~~~~~~~~~~a~k~l~sls~d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvsW~ 164 (713)
T KOG2999|consen 85 AKRIMEILTEGNNISKMEALKELDSLSLDPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVSWE 164 (713)
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceeeee
Confidence 455677788888888888999999999999999999999999999999986543 34555566666665443211111
Q ss_pred HHHhCchhhhHhhhc-cCCCHHHHHHHHHHHHHHhC-CchhHHHHHHcChHHHHHHHHcCCCHHHHHHHHHHHHHhhcCC
Q 007520 426 IMSRGGGQLLAKTAS-KTDDPQTLRMVAGALANLCG-NEKLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFAKCE 503 (600)
Q Consensus 426 I~~~G~I~~Lv~lL~-~~~~~~v~~~Aa~aL~nLa~-~~e~r~~i~~~G~i~~Lv~lL~s~~~~v~~~A~~aL~nLa~~~ 503 (600)
.+...+|...+.+.. ...+..+...|+..|-++.. ++..+..+.+.--+..|+..+...+..++..|...|..+-...
T Consensus 165 ~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~nal~~~a 244 (713)
T KOG2999|consen 165 SVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNALFRKA 244 (713)
T ss_pred ecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHHHHhhC
Confidence 111112222222211 11344677788888888864 4567788888888999999999999988888888887776554
Q ss_pred ch
Q 007520 504 SR 505 (600)
Q Consensus 504 ~~ 505 (600)
|+
T Consensus 245 ~~ 246 (713)
T KOG2999|consen 245 PD 246 (713)
T ss_pred Ch
Confidence 43
No 255
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=90.51 E-value=3.6 Score=47.38 Aligned_cols=97 Identities=20% Similarity=0.099 Sum_probs=58.0
Q ss_pred CHHHHHHHHccCCCHHHHHHHHHHHHHhhcC-CccHHHHHHhCchhhhHhhhccCCCHHHHHHHHHHHHHHhCCchhHHH
Q 007520 389 GLDALLLLLRTSQNTTILRVASGAIANLAMN-EMNQGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLCGNEKLHTM 467 (600)
Q Consensus 389 ~I~~Lv~lL~~~~~~~v~~~Al~aL~NLa~~-~~~r~~I~~~G~I~~Lv~lL~~~~~~~v~~~Aa~aL~nLa~~~e~r~~ 467 (600)
+|..|+.+--++.+.++++.|.-+|.-++.. |+ ..|..+.+|..+-+|-|+..++.+|.=-|....++.
T Consensus 555 air~lLh~aVsD~nDDVrRaAVialGFVl~~dp~---------~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~e- 624 (929)
T KOG2062|consen 555 AIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPE---------QLPSTVSLLSESYNPHVRYGAAMALGIACAGTGLKE- 624 (929)
T ss_pred hHHHhhcccccccchHHHHHHHHHheeeEecChh---------hchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHH-
Confidence 4555555544456666777777666665544 32 345566667666666777777777776565544444
Q ss_pred HHHcChHHHHHHHHcCCCHHHHHHHHHHHHHhh
Q 007520 468 LEEDGAIKALLAMVRSGNIDVIAQVARGLANFA 500 (600)
Q Consensus 468 i~~~G~i~~Lv~lL~s~~~~v~~~A~~aL~nLa 500 (600)
++..|=.+..++..-||..|+-+++.+.
T Consensus 625 -----Ai~lLepl~~D~~~fVRQgAlIa~amIm 652 (929)
T KOG2062|consen 625 -----AINLLEPLTSDPVDFVRQGALIALAMIM 652 (929)
T ss_pred -----HHHHHhhhhcChHHHHHHHHHHHHHHHH
Confidence 3344444445555667777777776664
No 256
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=90.50 E-value=0.52 Score=31.66 Aligned_cols=29 Identities=21% Similarity=0.267 Sum_probs=25.6
Q ss_pred hHHHHHHHHcCCCHHHHHHHHHHHHHhhc
Q 007520 473 AIKALLAMVRSGNIDVIAQVARGLANFAK 501 (600)
Q Consensus 473 ~i~~Lv~lL~s~~~~v~~~A~~aL~nLa~ 501 (600)
.+|.++.++.++++.||..|+.+|..|+.
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 36889999999999999999999999974
No 257
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=90.43 E-value=13 Score=40.02 Aligned_cols=69 Identities=17% Similarity=0.169 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHh--hhHHHHHHHHHhhhhhhh-hhhhhHHHHHHHHHHhhhhhh
Q 007520 88 YEFEKQLRESQISYDESMRNLVTRSEFLEKEN--AHLELEVEKILGELNHQK-DQNNLKREKIVQLEISLKNSK 158 (600)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~e~--~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 158 (600)
..+|-|..=..+.+|.++++|+++- +-|.| .+|+.|+=+|.++++|.. ...+-.-.++.+||.+-+..+
T Consensus 150 q~leqeqef~vnKlm~ki~Klen~t--~~kq~~leQLRre~V~lentlEQEqEalvN~LwKrmdkLe~ekr~Lq 221 (552)
T KOG2129|consen 150 QLLEQEQEFFVNKLMNKIRKLENKT--LLKQNTLEQLRREAVQLENTLEQEQEALVNSLWKRMDKLEQEKRYLQ 221 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhh--HHhhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555678888888888875 55666 789999999999997654 445665666666666655444
No 258
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=90.37 E-value=3.4 Score=43.27 Aligned_cols=189 Identities=12% Similarity=0.088 Sum_probs=122.1
Q ss_pred CHHHHHHHHHHHHHhhcCCccHHHHHH-hCchhhhHhhhccC-CCHHHHHHHHHHHHHHhCCchhHHHHHH-cChHHHHH
Q 007520 402 NTTILRVASGAIANLAMNEMNQGLIMS-RGGGQLLAKTASKT-DDPQTLRMVAGALANLCGNEKLHTMLEE-DGAIKALL 478 (600)
Q Consensus 402 ~~~v~~~Al~aL~NLa~~~~~r~~I~~-~G~I~~Lv~lL~~~-~~~~v~~~Aa~aL~nLa~~~e~r~~i~~-~G~i~~Lv 478 (600)
++-++-.|..+|.++...++.|..+-. ..+-..++.+++++ ++.+++...+-++|-|+.++...+.+-. ...+..|+
T Consensus 162 ~~lTrlfav~cl~~l~~~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~~~aqdi~K~~dli~dli 241 (432)
T COG5231 162 DFLTRLFAVSCLSNLEFDVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSKECAQDIDKMDDLINDLI 241 (432)
T ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence 445778899999999999888887766 44556688888654 3457888999999999998887744432 35667777
Q ss_pred HHHcC-CCHHHHHHHHHHHHHhhcCCchh-h------------hh----c------------------------------
Q 007520 479 AMVRS-GNIDVIAQVARGLANFAKCESRA-I------------VQ----G------------------------------ 510 (600)
Q Consensus 479 ~lL~s-~~~~v~~~A~~aL~nLa~~~~~~-~------------~q----~------------------------------ 510 (600)
.+.+. ....|.+-|++++.|++.-.|-. + .| +
T Consensus 242 ~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k~l~~fD~ 321 (432)
T COG5231 242 AIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTKKLCIFDN 321 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhhhhhHHHH
Confidence 77763 44567788888888887533210 0 00 0
Q ss_pred ---------------c------hhhHHHHHh--CCcHHHHHHhhcCCCHH-HHHHHHHHHHHhh-cCchhHHHHHHcccH
Q 007520 511 ---------------Q------RKGRSHLME--DSALEWLIANSKTNSAS-TRRHVELALCHLA-QNEDNARDFISRGGA 565 (600)
Q Consensus 511 ---------------~------~~~r~~l~e--~g~l~~Lv~Ll~s~~~~-v~~~Aa~aL~nLa-~~~~~~~~lv~~G~l 565 (600)
| ..+-..+.+ ...+..|..+++...+. .-.-||.-+..+. ..|+....+..-||-
T Consensus 322 Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl~Kyg~k 401 (432)
T COG5231 322 YLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINAVLSKYGVK 401 (432)
T ss_pred HHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHHHHHHhhhH
Confidence 0 001111222 12344555555554433 2233444455554 467777888889999
Q ss_pred HHHHHhhhcCChHHHHHHHHHHHhcC
Q 007520 566 KELVQISIESSREDIRNLAKKTMKSN 591 (600)
Q Consensus 566 ~~Lv~ll~~~~~~~ir~~A~~~L~~~ 591 (600)
..+++++.+++ ++++=.|..++..+
T Consensus 402 ~~im~L~nh~d-~~VkfeAl~a~q~~ 426 (432)
T COG5231 402 EIIMNLINHDD-DDVKFEALQALQTC 426 (432)
T ss_pred HHHHHHhcCCC-chhhHHHHHHHHHH
Confidence 99999998766 56777777666543
No 259
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=90.14 E-value=11 Score=40.66 Aligned_cols=207 Identities=20% Similarity=0.237 Sum_probs=114.1
Q ss_pred HHHHHHhhC-CCCHHHHHHHHHHHHHhhCCcchHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHH-HHHhhcCCccHHHH
Q 007520 349 LPKILQLLT-SEDPDVQIHAVKVVANLAAEDINQEKIVEEGGLDALLLLLRTSQNTTILRVASGA-IANLAMNEMNQGLI 426 (600)
Q Consensus 349 V~~Lv~LL~-s~~~~vr~~Aa~aL~nLa~~~~~~~~iv~~G~I~~Lv~lL~~~~~~~v~~~Al~a-L~NLa~~~~~r~~I 426 (600)
|..++.-+. +....+|..++--|+.-+.++..+..+...|.+..++..+...++..+...++.+ ++-|+.+..+-..+
T Consensus 23 v~ylld~l~~~~~~s~Rr~sll~La~K~~~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~~~l~ 102 (361)
T PF07814_consen 23 VEYLLDGLESSSSSSVRRSSLLELASKCADPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGLNMHLL 102 (361)
T ss_pred HHHHHhhcccCCCccHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCcchhhh
Confidence 555554444 4456788888888888888999999999999999999999655544344444333 33334333333333
Q ss_pred HHhCchhhhHhhhc--cC----C-----------------------------------CH--HHHHHHHHHHHHHh----
Q 007520 427 MSRGGGQLLAKTAS--KT----D-----------------------------------DP--QTLRMVAGALANLC---- 459 (600)
Q Consensus 427 ~~~G~I~~Lv~lL~--~~----~-----------------------------------~~--~v~~~Aa~aL~nLa---- 459 (600)
.+.+....++.++. .. . ++ ..+.-|..++-.++
T Consensus 103 ~~~~~~~ll~~Ll~~~~~~~~~~~~~~~~~~~lsk~~~~~~~~~~~~~~~~~~~~~~~~~~lsp~~lall~le~l~~~~~ 182 (361)
T PF07814_consen 103 LDRDSLRLLLKLLKVDKSLDVPSDSDSSRKKNLSKVQQKSRSLCKELLSSGSSWKSPKPPELSPQTLALLALESLVRSLR 182 (361)
T ss_pred hchhHHHHHHHHhccccccccccchhhhhhhhhhHHHHHHHHHHHHHHhccccccccCCcccccccHHHHHHHHHHHHHh
Confidence 33333333344443 00 0 00 01111222222331
Q ss_pred -----------CCchhHHHHHHcChHHHHHHHHc----CC-------C-----HHHHHHHHHHHHHhhcCCchhhhhcch
Q 007520 460 -----------GNEKLHTMLEEDGAIKALLAMVR----SG-------N-----IDVIAQVARGLANFAKCESRAIVQGQR 512 (600)
Q Consensus 460 -----------~~~e~r~~i~~~G~i~~Lv~lL~----s~-------~-----~~v~~~A~~aL~nLa~~~~~~~~q~~~ 512 (600)
..+..+..+...|++..++..+. .. + ......+.++|=|.+..+.
T Consensus 183 ~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~ILEs~T~~~~-------- 254 (361)
T PF07814_consen 183 EAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSILESVTFLSE-------- 254 (361)
T ss_pred hcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHHHHHHHhcCc--------
Confidence 12345666777888999888874 11 1 1234557777777776542
Q ss_pred hhHHHHHh--CCcHHHHHHh----hcCCCHHHHHHHHHHHHHhhcCc-hhHHHHHHcc
Q 007520 513 KGRSHLME--DSALEWLIAN----SKTNSASTRRHVELALCHLAQNE-DNARDFISRG 563 (600)
Q Consensus 513 ~~r~~l~e--~g~l~~Lv~L----l~s~~~~v~~~Aa~aL~nLa~~~-~~~~~lv~~G 563 (600)
.++..+.. .+.++.+... +......+...++..+.|++.+. ..+..+...+
T Consensus 255 ~nq~~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n~~~c~~~~s~~ 312 (361)
T PF07814_consen 255 ENQSYLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNNPSACEEFASPK 312 (361)
T ss_pred cchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCCccchHhhhhhH
Confidence 23333333 2333333332 22233445678888999998754 5555565443
No 260
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=90.08 E-value=6.5 Score=46.29 Aligned_cols=196 Identities=17% Similarity=0.173 Sum_probs=116.4
Q ss_pred HHhcCCHHHHHHhh--CCCCHHHHHHHHHHHHHhhCCcchHHHHHHcCCHHHHHHHHccCC---CHHHHHHHHHHHHHhh
Q 007520 343 ICDEVGLPKILQLL--TSEDPDVQIHAVKVVANLAAEDINQEKIVEEGGLDALLLLLRTSQ---NTTILRVASGAIANLA 417 (600)
Q Consensus 343 i~e~GgV~~Lv~LL--~s~~~~vr~~Aa~aL~nLa~~~~~~~~iv~~G~I~~Lv~lL~~~~---~~~v~~~Al~aL~NLa 417 (600)
-.+..-.|.++.+. .+++|.+-..+-.++-.++....+.....+. .||.++++|.... .......++-.|..+.
T Consensus 567 s~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~~~g~m~e~-~iPslisil~~~~~~~~~~l~~~aidvLttvv 645 (1005)
T KOG2274|consen 567 SMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIAANYGPMQER-LIPSLISVLQLNADKAPAGLCAIAIDVLTTVL 645 (1005)
T ss_pred hhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcchHHH-HHHHHHHHHcCcccccCchhhHHHHHHHHHHH
Confidence 33444455555554 3677877776766666666544444444444 7999999997332 2455666777788777
Q ss_pred cC--CccHHHHHHhCchhhhHhhhccCCCHHHHHHHHHHHHHHhCC-chhHHHHHHcChH------HHHHHHHcCC-CHH
Q 007520 418 MN--EMNQGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLCGN-EKLHTMLEEDGAI------KALLAMVRSG-NID 487 (600)
Q Consensus 418 ~~--~~~r~~I~~~G~I~~Lv~lL~~~~~~~v~~~Aa~aL~nLa~~-~e~r~~i~~~G~i------~~Lv~lL~s~-~~~ 487 (600)
++ ++.-+.++.. ++|++.++...++|..+...+..||+.+... .+--......+|. ..+-.+|... +..
T Consensus 646 r~tp~pL~~~l~~~-~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~~eq~~t~~~e~g~~~~yImqV~sqLLdp~~sds 724 (1005)
T KOG2274|consen 646 RNTPSPLPNLLICY-AFPAVAKITLHSDDHETLQNATECLRALISVTLEQLLTWHDEPGHNLWYIMQVLSQLLDPETSDS 724 (1005)
T ss_pred hcCCCCccHHHHHH-HhHHhHhheeecCChHHHHhHHHHHHHHHhcCHHHHHhhccCCCccHHHHHHHHHHHcCCccchh
Confidence 76 4555555554 7999999887888889999999999988644 2222222222222 2333444422 222
Q ss_pred HHHHHHHHHHHhhcCCchhhhhcchhhHHHHHh--CCcH-HHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 007520 488 VIAQVARGLANFAKCESRAIVQGQRKGRSHLME--DSAL-EWLIANSKTNSASTRRHVELALCHLAQ 551 (600)
Q Consensus 488 v~~~A~~aL~nLa~~~~~~~~q~~~~~r~~l~e--~g~l-~~Lv~Ll~s~~~~v~~~Aa~aL~nLa~ 551 (600)
....+++.+..|..+-+. . +.. ...+ ..+.++.......+-..-..++++|..
T Consensus 725 ~a~~VG~lV~tLit~a~~----------e-l~~n~d~IL~Avisrmq~ae~lsviQsLi~VfahL~~ 780 (1005)
T KOG2274|consen 725 AAAFVGPLVLTLITHASS----------E-LGPNLDQILRAVISRLQQAETLSVIQSLIMVFAHLVH 780 (1005)
T ss_pred HHHHHhHHHHHHHHHHHH----------H-hchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhh
Confidence 334566666666543211 1 100 0112 234445666777888888888888854
No 261
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=90.05 E-value=16 Score=38.78 Aligned_cols=17 Identities=35% Similarity=0.202 Sum_probs=11.1
Q ss_pred hhhhhHHHHHHHHHHhH
Q 007520 174 TTQLYEKKIAELNKKLE 190 (600)
Q Consensus 174 ~~~~~~~~~~~l~~~l~ 190 (600)
..+.+.++|.++.++++
T Consensus 252 ~k~~l~~eI~e~~~~~~ 268 (325)
T PF08317_consen 252 QKQELLAEIAEAEKIRE 268 (325)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45556666777776666
No 262
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=90.04 E-value=8.9 Score=44.94 Aligned_cols=156 Identities=15% Similarity=0.096 Sum_probs=99.4
Q ss_pred CHHHHHHHHHHHHHhhcCCccHHHHHHhCchhhhHhhhccCCCHHHHHHHHHHHHHHhCCchhHHHHHHcChHHHHHHHH
Q 007520 402 NTTILRVASGAIANLAMNEMNQGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLCGNEKLHTMLEEDGAIKALLAMV 481 (600)
Q Consensus 402 ~~~v~~~Al~aL~NLa~~~~~r~~I~~~G~I~~Lv~lL~~~~~~~v~~~Aa~aL~nLa~~~e~r~~i~~~G~i~~Lv~lL 481 (600)
+..-....-.+++.++..++.-. ..+.+++... +.+.++.+..--=|.+.+........ =++..+..=+
T Consensus 33 ~~~kidAmK~iIa~M~~G~dmss------Lf~dViK~~~-trd~ElKrL~ylYl~~yak~~P~~~l----LavNti~kDl 101 (757)
T COG5096 33 DYKKIDAMKKIIAQMSLGEDMSS------LFPDVIKNVA-TRDVELKRLLYLYLERYAKLKPELAL----LAVNTIQKDL 101 (757)
T ss_pred hHHHHHHHHHHHHHHhcCCChHH------HHHHHHHHHH-hcCHHHHHHHHHHHHHHhccCHHHHH----HHHHHHHhhc
Confidence 33344445566777766655222 2333444443 45666666555555555533221111 1455666667
Q ss_pred cCCCHHHHHHHHHHHHHhhcCCchhhhhcchhhHHHHHhCCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCchhHHHHHH
Q 007520 482 RSGNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSKTNSASTRRHVELALCHLAQNEDNARDFIS 561 (600)
Q Consensus 482 ~s~~~~v~~~A~~aL~nLa~~~~~~~~q~~~~~r~~l~e~g~l~~Lv~Ll~s~~~~v~~~Aa~aL~nLa~~~~~~~~lv~ 561 (600)
.++++.+|..|+++|+.|-... ++ ...++++.+++.++++-||..|+.|+..|-.-.. ....+
T Consensus 102 ~d~N~~iR~~AlR~ls~l~~~e--------------l~-~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~--~l~~~ 164 (757)
T COG5096 102 QDPNEEIRGFALRTLSLLRVKE--------------LL-GNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDK--DLYHE 164 (757)
T ss_pred cCCCHHHHHHHHHHHHhcChHH--------------HH-HHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCH--hhhhc
Confidence 8999999999999998884321 21 2478899999999999999999999999964322 23446
Q ss_pred cccHHHHHHhhhcCChHHHHHHHH
Q 007520 562 RGGAKELVQISIESSREDIRNLAK 585 (600)
Q Consensus 562 ~G~l~~Lv~ll~~~~~~~ir~~A~ 585 (600)
.|.+..+..++.++++..++++..
T Consensus 165 ~g~~~~l~~l~~D~dP~Vi~nAl~ 188 (757)
T COG5096 165 LGLIDILKELVADSDPIVIANALA 188 (757)
T ss_pred ccHHHHHHHHhhCCCchHHHHHHH
Confidence 778888888888877655555443
No 263
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.02 E-value=11 Score=44.23 Aligned_cols=186 Identities=15% Similarity=0.127 Sum_probs=120.4
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHhhCCcchHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcCCccHHHHHH
Q 007520 349 LPKILQLLTSEDPDVQIHAVKVVANLAAEDINQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMNEMNQGLIMS 428 (600)
Q Consensus 349 V~~Lv~LL~s~~~~vr~~Aa~aL~nLa~~~~~~~~iv~~G~I~~Lv~lL~~~~~~~v~~~Al~aL~NLa~~~~~r~~I~~ 428 (600)
.+..+..+.++-+.++..|...|..+......+..+...+++...+..|+ +.|+-+--+|...+..||.. ..
T Consensus 729 ~qeai~sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~Lk-dedsyvyLnaI~gv~~Lcev-------y~ 800 (982)
T KOG4653|consen 729 LQEAISSLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLK-DEDSYVYLNAIRGVVSLCEV-------YP 800 (982)
T ss_pred HHHHHHHhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhc-ccCceeeHHHHHHHHHHHHh-------cc
Confidence 34445666777888999999999999987677777788888999999998 66776777788877788764 22
Q ss_pred hCchhhhHhh-hccCCC--HHHHHHHHHHHHHHhCC-chhHHHHHHcChHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCc
Q 007520 429 RGGGQLLAKT-ASKTDD--PQTLRMVAGALANLCGN-EKLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFAKCES 504 (600)
Q Consensus 429 ~G~I~~Lv~l-L~~~~~--~~v~~~Aa~aL~nLa~~-~e~r~~i~~~G~i~~Lv~lL~s~~~~v~~~A~~aL~nLa~~~~ 504 (600)
...+|.|... ...... ++.+-.+..++.+++.. .+......+ -.+...+..+++++...|..+++.|++|+....
T Consensus 801 e~il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~-~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a 879 (982)
T KOG4653|consen 801 EDILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKA-VLINTFLSGVREPDHEFRASSLANLGQLCQLLA 879 (982)
T ss_pred hhhHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHH-HHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHh
Confidence 3456666653 322211 34455555677777522 233322222 344555566677777778889999999985421
Q ss_pred hhhhhcchhhHHHHHhCCcHHHHHHhhcC-CCHHHHHHHHHHHHHhhcC
Q 007520 505 RAIVQGQRKGRSHLMEDSALEWLIANSKT-NSASTRRHVELALCHLAQN 552 (600)
Q Consensus 505 ~~~~q~~~~~r~~l~e~g~l~~Lv~Ll~s-~~~~v~~~Aa~aL~nLa~~ 552 (600)
. .+...|. .++..++.+... +.+.+|+.|+..+..+-.+
T Consensus 880 ~-------~vsd~~~--ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~ 919 (982)
T KOG4653|consen 880 F-------QVSDFFH--EVLQLILSLETTDGSVLVRRAAVHLLAELLNG 919 (982)
T ss_pred h-------hhhHHHH--HHHHHHHHHHccCCchhhHHHHHHHHHHHHhc
Confidence 0 1111222 255556665544 5678888898888888553
No 264
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.01 E-value=37 Score=38.06 Aligned_cols=184 Identities=24% Similarity=0.307 Sum_probs=93.2
Q ss_pred HHhhhHHHHHHHHHhHHHHHHHhhhHHHHHHHHHhhh-----hhhhhhhh-----------------hHHHHHHHHHHhh
Q 007520 97 SQISYDESMRNLVTRSEFLEKENAHLELEVEKILGEL-----NHQKDQNN-----------------LKREKIVQLEISL 154 (600)
Q Consensus 97 ~~~~~~~~~~~l~~~~~~~~~e~~~~~~~~~~~~~~~-----~~~~~~~~-----------------~~~~~~~~~~~~~ 154 (600)
|--..-+....|+.+++.|+.+.-..+.||+.+...+ +|++...+ ....++-.||.+|
T Consensus 37 yGL~lLeeK~~Lkqq~eEleaeyd~~R~Eldqtkeal~q~~s~hkk~~~~g~e~EesLLqESaakE~~yl~kI~eleneL 116 (772)
T KOG0999|consen 37 YGLELLEEKEDLKQQLEELEAEYDLARTELDQTKEALGQYRSQHKKVARDGEEREESLLQESAAKEEYYLQKILELENEL 116 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 3444557777888889999998888888988887777 33333222 2334555666666
Q ss_pred hhhhhhhhhhhHHhhhhhhhhhhhHHHHHHHH---HHhHhHHHhhhhhHHHHHH-HHHHHhhhhhcccchhhHHHHHHHH
Q 007520 155 KNSKQYEMENSTYQKALADTTQLYEKKIAELN---KKLEDEHACFEGAVEQLDM-VKKLLSDYQNSNQGQKEVHELCVKL 230 (600)
Q Consensus 155 ~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~l~---~~l~~e~~~~~~~~~~~~~-~~~~~~~~q~~~~~~~e~~~l~~~~ 230 (600)
|+..+- +.|- ...-..++++-.+++ .-+|+++.|..+-..+..- =.||||+|-..+-.. -.|+..|
T Consensus 117 Kq~r~e-l~~~------q~E~erl~~~~sd~~e~~~~~E~qR~rlr~elKe~KfRE~RllseYSELEEEN---IsLQKqV 186 (772)
T KOG0999|consen 117 KQLRQE-LTNV------QEENERLEKVHSDLKESNAAVEDQRRRLRDELKEYKFREARLLSEYSELEEEN---ISLQKQV 186 (772)
T ss_pred HHHHHH-HHHH------HHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---chHHHHH
Confidence 654321 2221 112222333333333 3444444433222222221 458888886554222 2444444
Q ss_pred HHHHH---HHHH-------HHHHHHHHHHHHHHHHHhhhhchHHHHHHHHhhhHHHHhhhhHHHHHHHHh
Q 007520 231 KETRQ---LHES-------AVYEVQTLKSEYKNLLEEKETMSDELQAARQRLLVEEKQRKAIEYELVKLK 290 (600)
Q Consensus 231 ~d~~~---~~e~-------~~~el~~l~~~~~~l~~~~~~~~~el~~~~~~l~~e~~~~~~le~~~~~l~ 290 (600)
..+++ +|+. +.++.--+..++.+...-..-+...|.-....+..|..++..++.++....
T Consensus 187 s~LR~sQVEyEglkheikRleEe~elln~q~ee~~~Lk~IAekQlEEALeTlq~EReqk~alkkEL~q~~ 256 (772)
T KOG0999|consen 187 SNLRQSQVEYEGLKHEIKRLEEETELLNSQLEEAIRLKEIAEKQLEEALETLQQEREQKNALKKELSQYR 256 (772)
T ss_pred HHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhc
Confidence 44433 3444 444444444554443333332222333333335566677777776766655
No 265
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=89.91 E-value=0.093 Score=61.68 Aligned_cols=32 Identities=25% Similarity=0.306 Sum_probs=0.0
Q ss_pred HHHHHhHHHHHHHhhhHHHHHHHHHhhhhhhh
Q 007520 106 RNLVTRSEFLEKENAHLELEVEKILGELNHQK 137 (600)
Q Consensus 106 ~~l~~~~~~~~~e~~~~~~~~~~~~~~~~~~~ 137 (600)
..+..+....+.+...|+.++..+...+....
T Consensus 174 ~~l~~~~~~~e~~~~~l~~e~~~l~~~le~~~ 205 (722)
T PF05557_consen 174 SELERQAENAESQIQSLESELEELKEQLEELQ 205 (722)
T ss_dssp --------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333334444445555544444443333
No 266
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=89.91 E-value=24 Score=39.92 Aligned_cols=208 Identities=13% Similarity=0.154 Sum_probs=120.6
Q ss_pred HHHHH-HhhC-CCCHHHHHHHHHHHHH-hhC------CcchHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcC
Q 007520 349 LPKIL-QLLT-SEDPDVQIHAVKVVAN-LAA------EDINQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMN 419 (600)
Q Consensus 349 V~~Lv-~LL~-s~~~~vr~~Aa~aL~n-La~------~~~~~~~iv~~G~I~~Lv~lL~~~~~~~v~~~Al~aL~NLa~~ 419 (600)
+-.++ .-++ ..+..+|-.|..+|.+ |.. .++++.-+. ...+..-. +++.+++..|.+||..+-.-
T Consensus 178 l~aiv~ga~k~et~~avRLaaL~aL~dsl~fv~~nf~~E~erNy~m-----qvvceatq-~~d~e~q~aafgCl~kim~L 251 (858)
T COG5215 178 LFAIVMGALKNETTSAVRLAALKALMDSLMFVQGNFCYEEERNYFM-----QVVCEATQ-GNDEELQHAAFGCLNKIMML 251 (858)
T ss_pred HHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHhhcchhhhchhh-----eeeehhcc-CCcHHHHHHHHHHHHHHHHH
Confidence 34444 3333 4577899999999997 432 122222222 22233333 78899999999999988654
Q ss_pred -CccHHHHHHhCchhhhHhhhccCCCHHHHHHHHHHHHHHhCCc-hhH----------------HHHHHcChHHHHHHHH
Q 007520 420 -EMNQGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLCGNE-KLH----------------TMLEEDGAIKALLAMV 481 (600)
Q Consensus 420 -~~~r~~I~~~G~I~~Lv~lL~~~~~~~v~~~Aa~aL~nLa~~~-e~r----------------~~i~~~G~i~~Lv~lL 481 (600)
-..-..+++.-........+ .+++.++...++.--.-+|..+ ++- ..-.-.+++|.|+.+|
T Consensus 252 yY~fm~~ymE~aL~alt~~~m-ks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL 330 (858)
T COG5215 252 YYKFMQSYMENALAALTGRFM-KSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLL 330 (858)
T ss_pred HHHHHHHHHHHHHHHHHHHHh-cCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHH
Confidence 34444666653344444555 4466677777775433444110 000 0001134788899998
Q ss_pred c--CCC-----HHHHHHHHHHHHHhhcCCchhhhhcchhhHHHHHhCCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCch
Q 007520 482 R--SGN-----IDVIAQVARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSKTNSASTRRHVELALCHLAQNED 554 (600)
Q Consensus 482 ~--s~~-----~~v~~~A~~aL~nLa~~~~~~~~q~~~~~r~~l~e~g~l~~Lv~Ll~s~~~~v~~~Aa~aL~nLa~~~~ 554 (600)
. .+| =.+...|..+|.-++.. ....|++. ++..+-..+++++-.-+..|+.|+...-..+.
T Consensus 331 ~~q~ed~~~DdWn~smaA~sCLqlfaq~-----------~gd~i~~p-Vl~FvEqni~~~~w~nreaavmAfGSvm~gp~ 398 (858)
T COG5215 331 EKQGEDYYGDDWNPSMAASSCLQLFAQL-----------KGDKIMRP-VLGFVEQNIRSESWANREAAVMAFGSVMHGPC 398 (858)
T ss_pred HhcCCCccccccchhhhHHHHHHHHHHH-----------hhhHhHHH-HHHHHHHhccCchhhhHHHHHHHhhhhhcCcc
Confidence 4 222 23456666677666632 12223332 55555567888888889999999988866543
Q ss_pred --hHHHHHHcccHHHHHHhhhcCC
Q 007520 555 --NARDFISRGGAKELVQISIESS 576 (600)
Q Consensus 555 --~~~~lv~~G~l~~Lv~ll~~~~ 576 (600)
....++ ..++|.+.....+++
T Consensus 399 ~~~lT~~V-~qalp~i~n~m~D~~ 421 (858)
T COG5215 399 EDCLTKIV-PQALPGIENEMSDSC 421 (858)
T ss_pred HHHHHhhH-HhhhHHHHHhcccce
Confidence 444444 347777777776554
No 267
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.83 E-value=32 Score=40.27 Aligned_cols=83 Identities=13% Similarity=0.022 Sum_probs=48.1
Q ss_pred ccccchHHHH-hhcCchhHHHHHhcCCHHHHH----HhhCCCCHHHHHHHHHHHHHhhCCcchHHHHHHcCCHHHHHHHH
Q 007520 323 SLQKSNPSRE-LSGQRATIAKICDEVGLPKIL----QLLTSEDPDVQIHAVKVVANLAAEDINQEKIVEEGGLDALLLLL 397 (600)
Q Consensus 323 ~~~r~~a~~~-L~~~~~~~~~i~e~GgV~~Lv----~LL~s~~~~vr~~Aa~aL~nLa~~~~~~~~iv~~G~I~~Lv~lL 397 (600)
..-|..-+.+ |..++..- .+-.+. .=|++.+.-+.-.|..+|++++.-+-.+. ..|.+..+|
T Consensus 85 ~dKRiGYLaamLlLdE~qd-------vllLltNslknDL~s~nq~vVglAL~alg~i~s~Emard------lapeVe~Ll 151 (866)
T KOG1062|consen 85 LDKRIGYLAAMLLLDERQD-------LLLLLTNSLKNDLNSSNQYVVGLALCALGNICSPEMARD------LAPEVERLL 151 (866)
T ss_pred hHHHHHHHHHHHHhccchH-------HHHHHHHHHHhhccCCCeeehHHHHHHhhccCCHHHhHH------hhHHHHHHH
Confidence 4455666666 55544421 122233 33457777788888888888776443331 344455566
Q ss_pred ccCCCHHHHHHHHHHHHHhhcC
Q 007520 398 RTSQNTTILRVASGAIANLAMN 419 (600)
Q Consensus 398 ~~~~~~~v~~~Al~aL~NLa~~ 419 (600)
. .+++-+++.|+.|+..+-.-
T Consensus 152 ~-~~~~~irKKA~Lca~r~irK 172 (866)
T KOG1062|consen 152 Q-HRDPYIRKKAALCAVRFIRK 172 (866)
T ss_pred h-CCCHHHHHHHHHHHHHHHHc
Confidence 6 56777777777776666543
No 268
>PRK10884 SH3 domain-containing protein; Provisional
Probab=89.77 E-value=2.5 Score=41.86 Aligned_cols=26 Identities=12% Similarity=0.100 Sum_probs=13.8
Q ss_pred HHHHhHHHHHHHhhhHHHHHHHHHhh
Q 007520 107 NLVTRSEFLEKENAHLELEVEKILGE 132 (600)
Q Consensus 107 ~l~~~~~~~~~e~~~~~~~~~~~~~~ 132 (600)
+|.++++.+..|+..|+.+..++...
T Consensus 143 ~L~~~l~~~~~~~~~l~~~~~~~~~~ 168 (206)
T PRK10884 143 KLKNQLIVAQKKVDAANLQLDDKQRT 168 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555555554444
No 269
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=89.61 E-value=0.56 Score=31.50 Aligned_cols=28 Identities=36% Similarity=0.612 Sum_probs=24.5
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHhhC
Q 007520 349 LPKILQLLTSEDPDVQIHAVKVVANLAA 376 (600)
Q Consensus 349 V~~Lv~LL~s~~~~vr~~Aa~aL~nLa~ 376 (600)
+|.++.++.++++.||..|+.+|+.++.
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 5788999999999999999999998864
No 270
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=89.46 E-value=10 Score=45.08 Aligned_cols=177 Identities=15% Similarity=0.216 Sum_probs=105.7
Q ss_pred HHHcCCHHHHHHHHccCC----CHHHHHHHHHHHHHhhcCCccHHHHHHhCchhhhHhhhc---cCCC----HHHHHHHH
Q 007520 384 IVEEGGLDALLLLLRTSQ----NTTILRVASGAIANLAMNEMNQGLIMSRGGGQLLAKTAS---KTDD----PQTLRMVA 452 (600)
Q Consensus 384 iv~~G~I~~Lv~lL~~~~----~~~v~~~Al~aL~NLa~~~~~r~~I~~~G~I~~Lv~lL~---~~~~----~~v~~~Aa 452 (600)
+.++||+..|+.++.... ...+....+..|...+..+.||..+++.|+++.|+..|. ..+. +.+.+...
T Consensus 113 ~~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL 192 (802)
T PF13764_consen 113 LAECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKVKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLL 192 (802)
T ss_pred hhcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhhHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHH
Confidence 447889999999987533 345666677778777878999999999999999988774 2222 35555555
Q ss_pred HHHHHHhCC---chhHHH--HH--------HcChHHHHHHHHcC----CCHHHHHHHHHHHHHhhcCCchhhhhcchhhH
Q 007520 453 GALANLCGN---EKLHTM--LE--------EDGAIKALLAMVRS----GNIDVIAQVARGLANFAKCESRAIVQGQRKGR 515 (600)
Q Consensus 453 ~aL~nLa~~---~e~r~~--i~--------~~G~i~~Lv~lL~s----~~~~v~~~A~~aL~nLa~~~~~~~~q~~~~~r 515 (600)
.++-.|... ...... .. +...+..++..+.+ .++.+....+++|-+|+.++.+ ..
T Consensus 193 ~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e--------~m 264 (802)
T PF13764_consen 193 EIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEE--------KM 264 (802)
T ss_pred HHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHH--------HH
Confidence 544444321 111110 01 11235666666653 4688999999999999977633 22
Q ss_pred HHHHhCCcHHHHHHhhcCC------CHHHHHHHHHHHHHhhc----C---chhHHHHHHcccHHHHHHhhhc
Q 007520 516 SHLMEDSALEWLIANSKTN------SASTRRHVELALCHLAQ----N---EDNARDFISRGGAKELVQISIE 574 (600)
Q Consensus 516 ~~l~e~g~l~~Lv~Ll~s~------~~~v~~~Aa~aL~nLa~----~---~~~~~~lv~~G~l~~Lv~ll~~ 574 (600)
..+++ .+-..++-+ .+.- .....+++.++. + ...+..+++.|.+...+..+..
T Consensus 265 ~~Lv~-----~F~p~l~f~~~D~~~~~~~-~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~ 330 (802)
T PF13764_consen 265 DALVE-----HFKPYLDFDKFDEEHSPDE-QFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLK 330 (802)
T ss_pred HHHHH-----HHHHhcChhhcccccCchH-HHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHH
Confidence 22222 222222110 1111 122444555543 1 1356777788888888887764
No 271
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=89.38 E-value=33 Score=40.45 Aligned_cols=44 Identities=25% Similarity=0.338 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHhhhHHHHHHHHHhhhhh
Q 007520 88 YEFEKQLRESQISYDESMRNLVTRSEFLEKENAHLELEVEKILGELNH 135 (600)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~e~~~~~~~~~~~~~~~~~ 135 (600)
..+++++...+ +.-..|.+|+|....--..|..-+++++..++.
T Consensus 582 ~~l~e~~~~l~----~~ae~LaeR~e~a~d~Qe~L~~R~~~vl~~l~~ 625 (717)
T PF10168_consen 582 QELQEERKSLR----ESAEKLAERYEEAKDKQEKLMKRVDRVLQLLNS 625 (717)
T ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44444444332 444556666655555555555555555555443
No 272
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=89.22 E-value=0.52 Score=51.43 Aligned_cols=155 Identities=20% Similarity=0.090 Sum_probs=91.6
Q ss_pred CCHHHHHHhhCCCCHHHHHHHHHHHHHhhC----Ccch----HHHHHHcCCHHHHHHHH--ccCCCHHHHHHHHHHHHHh
Q 007520 347 VGLPKILQLLTSEDPDVQIHAVKVVANLAA----EDIN----QEKIVEEGGLDALLLLL--RTSQNTTILRVASGAIANL 416 (600)
Q Consensus 347 GgV~~Lv~LL~s~~~~vr~~Aa~aL~nLa~----~~~~----~~~iv~~G~I~~Lv~lL--~~~~~~~v~~~Al~aL~NL 416 (600)
.+...++..+.+..-..|..++++++|++. +-++ ...+... .+..++... .......++.++..+|.|+
T Consensus 433 ~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~-ll~~~~~~A~~~~Ad~dkV~~navraLgnl 511 (728)
T KOG4535|consen 433 DAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGL-LLLKMLRSAIEASADKDKVKSNAVRALGNL 511 (728)
T ss_pred HHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHH-HHHHHHHHHHHhhhhhhhhhhHHHHHHhhH
Confidence 344445555556566789999999998873 2222 1222211 133333322 2233456888899999999
Q ss_pred hcC-C---ccHHHHHHhCchhhhHhhhccCCCHHHHHHHHHHHHHHhCCchhHHH--HHHcChHHHHHHHHc-CCCHHHH
Q 007520 417 AMN-E---MNQGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLCGNEKLHTM--LEEDGAIKALLAMVR-SGNIDVI 489 (600)
Q Consensus 417 a~~-~---~~r~~I~~~G~I~~Lv~lL~~~~~~~v~~~Aa~aL~nLa~~~e~r~~--i~~~G~i~~Lv~lL~-s~~~~v~ 489 (600)
... . +.-......|.+..+.....-.....|+-+||.++.||..++...-. =-...+++.|..++. ..|-.|+
T Consensus 512 lQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~L~~Lv~~~~NFKVR 591 (728)
T KOG4535|consen 512 LQFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNALTSLVTSCKNFKVR 591 (728)
T ss_pred HHHHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCccccccCCCchHHHHHHHHHHHHHhccceEe
Confidence 764 1 11111122233333333222224458999999999999988765211 112345677777774 6788999
Q ss_pred HHHHHHHHHhhcC
Q 007520 490 AQVARGLANFAKC 502 (600)
Q Consensus 490 ~~A~~aL~nLa~~ 502 (600)
.+|+++|.--...
T Consensus 592 i~AA~aL~vp~~r 604 (728)
T KOG4535|consen 592 IRAAAALSVPGKR 604 (728)
T ss_pred ehhhhhhcCCCCc
Confidence 9999999876644
No 273
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=89.03 E-value=27 Score=35.14 Aligned_cols=199 Identities=16% Similarity=0.124 Sum_probs=108.7
Q ss_pred HHHHH-hhCCCCHHHHHHHHHHHHHhhCCc-chHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcCCccHHHHH
Q 007520 350 PKILQ-LLTSEDPDVQIHAVKVVANLAAED-INQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMNEMNQGLIM 427 (600)
Q Consensus 350 ~~Lv~-LL~s~~~~vr~~Aa~aL~nLa~~~-~~~~~iv~~G~I~~Lv~lL~~~~~~~v~~~Al~aL~NLa~~~~~r~~I~ 427 (600)
+.|+. +-+..++.++.....+|..++.++ .+...+++ .|..+.. .+.......+.+.+..+-...+-.-
T Consensus 3 ~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~~~~~~v~~-----~L~~L~~-~~~~~~~~~~~rLl~~lw~~~~r~f--- 73 (234)
T PF12530_consen 3 PLLLYKLGKISDPELQLPLLEALPSLACHKNVCVPPVLQ-----TLVSLVE-QGSLELRYVALRLLTLLWKANDRHF--- 73 (234)
T ss_pred HHHHHHhcCCCChHHHHHHHHHHHHHhccCccchhHHHH-----HHHHHHc-CCchhHHHHHHHHHHHHHHhCchHH---
Confidence 44553 556788999999999999999866 44433332 2333333 4444454556666666654422111
Q ss_pred HhCchhhhHhh--------hcc-CCCHHHHHHHHHHHHHHhCCchhHHHHHHcChHHHHHHHH-cCCCHHHHHHHHHHHH
Q 007520 428 SRGGGQLLAKT--------ASK-TDDPQTLRMVAGALANLCGNEKLHTMLEEDGAIKALLAMV-RSGNIDVIAQVARGLA 497 (600)
Q Consensus 428 ~~G~I~~Lv~l--------L~~-~~~~~v~~~Aa~aL~nLa~~~e~r~~i~~~G~i~~Lv~lL-~s~~~~v~~~A~~aL~ 497 (600)
+.+..++.. ... ...-......+.++..+|..... .....++.+..++ +..++.++..++.+|.
T Consensus 74 --~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~----~g~~ll~~ls~~L~~~~~~~~~alale~l~ 147 (234)
T PF12530_consen 74 --PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD----HGVDLLPLLSGCLNQSCDEVAQALALEALA 147 (234)
T ss_pred --HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh----hHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 222222222 111 11223344445678888754333 2234677788888 7888889999999999
Q ss_pred HhhcCCchhhhhcchhhHHHHHh-CCcHHHHHHhhcCC-CHHHHHHHHHHHHHhhcCc--hhHHHHHHcccHHHHHHhhh
Q 007520 498 NFAKCESRAIVQGQRKGRSHLME-DSALEWLIANSKTN-SASTRRHVELALCHLAQNE--DNARDFISRGGAKELVQISI 573 (600)
Q Consensus 498 nLa~~~~~~~~q~~~~~r~~l~e-~g~l~~Lv~Ll~s~-~~~v~~~Aa~aL~nLa~~~--~~~~~lv~~G~l~~Lv~ll~ 573 (600)
.|+..+ +++ ......|..-+..+ .+.+....+..+..+.... ..........++..|-++..
T Consensus 148 ~Lc~~~--------------vvd~~s~w~vl~~~l~~~~rp~v~~~l~~l~~l~~~~~~~~e~~~~~~~~~l~~lW~~~~ 213 (234)
T PF12530_consen 148 PLCEAE--------------VVDFYSAWKVLQKKLSLDYRPLVLKSLCSLFALVPQGAVDSEEYEELKRQILQLLWEYTS 213 (234)
T ss_pred HHHHHh--------------hccHHHHHHHHHHhcCCccchHHHHHHHHHHHHhccccCChhhhhHHHHHHHHHHHhhcc
Confidence 998432 222 23344444444332 4555554444444433322 23333344557777777776
Q ss_pred cCCh
Q 007520 574 ESSR 577 (600)
Q Consensus 574 ~~~~ 577 (600)
..+.
T Consensus 214 ~~~~ 217 (234)
T PF12530_consen 214 SSDV 217 (234)
T ss_pred cccc
Confidence 6553
No 274
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=88.79 E-value=34 Score=35.91 Aligned_cols=125 Identities=22% Similarity=0.265 Sum_probs=78.3
Q ss_pred HHHHHHHhhhhhhhhhhhhhHHhh---hhhhhhhhhHHHHHHHHHHhHhHHHhhhhhHHHHHHHHHHHh-hhhhcccchh
Q 007520 146 KIVQLEISLKNSKQYEMENSTYQK---ALADTTQLYEKKIAELNKKLEDEHACFEGAVEQLDMVKKLLS-DYQNSNQGQK 221 (600)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~n~~~~~---~l~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~~~~~~~~~-~~q~~~~~~~ 221 (600)
+..+++.==+.++.++.||..... .|...|..|+++-..|- .+=...+..|..++..|...|+ .......++.
T Consensus 158 ~~~~le~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~EekEqqLv---~dcv~QL~~An~qia~LseELa~k~Ee~~rQQE 234 (306)
T PF04849_consen 158 KCIQLEALQEKLKSLEEENEQLRSEASQLKTETDTYEEKEQQLV---LDCVKQLSEANQQIASLSEELARKTEENRRQQE 234 (306)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHHHHHHH---HHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555666667766643 45557778888766663 2223344556666666666665 4445557777
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHhhh
Q 007520 222 EVHELCVKLKETRQLHESAVYEVQTLKSEYKNLLEEKETMSDELQAARQRLL 273 (600)
Q Consensus 222 e~~~l~~~~~d~~~~~e~~~~el~~l~~~~~~l~~~~~~~~~el~~~~~~l~ 273 (600)
|..+|.+.+.|+.+.+.....|--.|..++..-+..-..+..||..++.+-.
T Consensus 235 EIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~ 286 (306)
T PF04849_consen 235 EITSLLSQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKYA 286 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999888888877666776665444444445566665554443
No 275
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=88.67 E-value=16 Score=39.92 Aligned_cols=22 Identities=41% Similarity=0.526 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHhhhchhHHHHH
Q 007520 71 LLTAKIEMQQKLRENDKYEFEK 92 (600)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~ 92 (600)
.|+.++++|-+..+.-+.++++
T Consensus 325 ll~sqleSqr~y~e~~~~e~~q 346 (493)
T KOG0804|consen 325 LLTSQLESQRKYYEQIMSEYEQ 346 (493)
T ss_pred hhhhhhhHHHHHHHHHHHHHHH
Confidence 5667777777766655555554
No 276
>PRK04863 mukB cell division protein MukB; Provisional
Probab=88.64 E-value=84 Score=40.30 Aligned_cols=30 Identities=17% Similarity=0.066 Sum_probs=13.6
Q ss_pred hhhhhhhhHHHHHHHHHHhHhHHHhhhhhH
Q 007520 171 LADTTQLYEKKIAELNKKLEDEHACFEGAV 200 (600)
Q Consensus 171 l~~~~~~~~~~~~~l~~~l~~e~~~~~~~~ 200 (600)
|.+....|..++.++...+.+-......++
T Consensus 440 Le~~LenF~aklee~e~qL~elE~kL~~le 469 (1486)
T PRK04863 440 AEDWLEEFQAKEQEATEELLSLEQKLSVAQ 469 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555544443333333333
No 277
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=88.61 E-value=25 Score=34.23 Aligned_cols=50 Identities=26% Similarity=0.264 Sum_probs=23.4
Q ss_pred HHHhHHHHHHHhhhHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHhhhhh
Q 007520 108 LVTRSEFLEKENAHLELEVEKILGELNHQKDQNNLKREKIVQLEISLKNS 157 (600)
Q Consensus 108 l~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (600)
|...++-|.--|++|..|...|...+..--..|.-....+-.|.-+++++
T Consensus 6 L~~~v~dL~~~n~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~ 55 (193)
T PF14662_consen 6 LLSCVEDLQLNNQKLADENAKLQRSVETAEEGNAQLAEEITDLRKQLKSL 55 (193)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444555544444444444444444444444444444444
No 278
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.57 E-value=11 Score=43.90 Aligned_cols=172 Identities=12% Similarity=0.043 Sum_probs=88.2
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHhhCCcchHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcC-CccHHHHH
Q 007520 349 LPKILQLLTSEDPDVQIHAVKVVANLAAEDINQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMN-EMNQGLIM 427 (600)
Q Consensus 349 V~~Lv~LL~s~~~~vr~~Aa~aL~nLa~~~~~~~~iv~~G~I~~Lv~lL~~~~~~~v~~~Al~aL~NLa~~-~~~r~~I~ 427 (600)
-..|..||++........|.+-|.++.....+. ....|.+|+-.. +.+.++++..---|...|.. ++..-
T Consensus 37 ~~dL~~lLdSnkd~~KleAmKRIia~iA~G~dv-----S~~Fp~VVKNVa-skn~EVKkLVyvYLlrYAEeqpdLAL--- 107 (968)
T KOG1060|consen 37 HDDLKQLLDSNKDSLKLEAMKRIIALIAKGKDV-----SLLFPAVVKNVA-SKNIEVKKLVYVYLLRYAEEQPDLAL--- 107 (968)
T ss_pred hHHHHHHHhccccHHHHHHHHHHHHHHhcCCcH-----HHHHHHHHHHhh-ccCHHHHHHHHHHHHHHhhcCCCcee---
Confidence 456677787777776666766655554432221 113455666555 55667776655555555544 22110
Q ss_pred HhCchhhhHhhhccCCCHHHHHHHHHHHHHHhCCchhHHHHHHcChHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchhh
Q 007520 428 SRGGGQLLAKTASKTDDPQTLRMVAGALANLCGNEKLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFAKCESRAI 507 (600)
Q Consensus 428 ~~G~I~~Lv~lL~~~~~~~v~~~Aa~aL~nLa~~~e~r~~i~~~G~i~~Lv~lL~s~~~~v~~~A~~aL~nLa~~~~~~~ 507 (600)
=-|..+-+.|.+ +++.++..|+++|..+ |..++.-=.+.++-....+..+-||..|+-|+--|=.-+++
T Consensus 108 --LSIntfQk~L~D-pN~LiRasALRvlSsI------Rvp~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e-- 176 (968)
T KOG1060|consen 108 --LSINTFQKALKD-PNQLIRASALRVLSSI------RVPMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPE-- 176 (968)
T ss_pred --eeHHHHHhhhcC-CcHHHHHHHHHHHHhc------chhhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChh--
Confidence 023344445533 5556666666666532 11111111112222233466677777777777666544432
Q ss_pred hhcchhhHHHHHhCCcHHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 007520 508 VQGQRKGRSHLMEDSALEWLIANSKTNSASTRRHVELALCHLAQ 551 (600)
Q Consensus 508 ~q~~~~~r~~l~e~g~l~~Lv~Ll~s~~~~v~~~Aa~aL~nLa~ 551 (600)
.+. ..+..+-.++.+.++.|.-.|+.|+-.+|.
T Consensus 177 ------~k~-----qL~e~I~~LLaD~splVvgsAv~AF~evCP 209 (968)
T KOG1060|consen 177 ------QKD-----QLEEVIKKLLADRSPLVVGSAVMAFEEVCP 209 (968)
T ss_pred ------hHH-----HHHHHHHHHhcCCCCcchhHHHHHHHHhch
Confidence 111 133444446666666666666666666553
No 279
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=88.21 E-value=22 Score=33.10 Aligned_cols=11 Identities=36% Similarity=0.407 Sum_probs=4.2
Q ss_pred HHHHHHHHHhh
Q 007520 144 REKIVQLEISL 154 (600)
Q Consensus 144 ~~~~~~~~~~~ 154 (600)
.+++..||-+|
T Consensus 79 ~rriq~LEeel 89 (143)
T PF12718_consen 79 NRRIQLLEEEL 89 (143)
T ss_pred HhhHHHHHHHH
Confidence 33333333333
No 280
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=88.11 E-value=34 Score=35.08 Aligned_cols=137 Identities=19% Similarity=0.181 Sum_probs=82.3
Q ss_pred HHHHHHHHHhHHHHHHHhhhHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHhhhhhhhhhhhhhHHhhhhhhhhhhhHHH
Q 007520 102 DESMRNLVTRSEFLEKENAHLELEVEKILGELNHQKDQNNLKREKIVQLEISLKNSKQYEMENSTYQKALADTTQLYEKK 181 (600)
Q Consensus 102 ~~~~~~l~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~ 181 (600)
..++..|.....||.+-|..|-.+|.+...+-+..-..--...+.-...-.-|+++...+++ .-+..|...-..++++
T Consensus 5 r~sl~el~~h~~~L~~~N~~L~~~IqdtE~st~~~Vr~lLqqy~~~~~~i~~le~~~~~~l~--~ak~eLqe~eek~e~~ 82 (258)
T PF15397_consen 5 RTSLQELKKHEDFLTKLNKELIKEIQDTEDSTALKVRKLLQQYDIYRTAIDILEYSNHKQLQ--QAKAELQEWEEKEESK 82 (258)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHccChHHHH--HHHHHHHHHHHHHHhH
Confidence 36777888999999999999999999977665322211111111111111122222211111 1234455577888999
Q ss_pred HHHHHHHhHhHHHhhhhhHHHHHH----------HHH-HHh----hhhhcc-cchhhHHHHHHHHHHHHHHHHHH
Q 007520 182 IAELNKKLEDEHACFEGAVEQLDM----------VKK-LLS----DYQNSN-QGQKEVHELCVKLKETRQLHESA 240 (600)
Q Consensus 182 ~~~l~~~l~~e~~~~~~~~~~~~~----------~~~-~~~----~~q~~~-~~~~e~~~l~~~~~d~~~~~e~~ 240 (600)
+..|..+++.-.++...+.++|.. +|. .|+ -+|... .++.|++.+.+...--+..++..
T Consensus 83 l~~Lq~ql~~l~akI~k~~~el~~L~TYkD~EYPvK~vqIa~L~rqlq~lk~~qqdEldel~e~~~~el~~l~~~ 157 (258)
T PF15397_consen 83 LSKLQQQLEQLDAKIQKTQEELNFLSTYKDHEYPVKAVQIANLVRQLQQLKDSQQDELDELNEMRQMELASLSRK 157 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999987 222 222 333333 34446666666666555555543
No 281
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=87.94 E-value=14 Score=43.73 Aligned_cols=217 Identities=12% Similarity=0.086 Sum_probs=122.7
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcchHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcCCccHHHHHHhCchhhhH
Q 007520 357 TSEDPDVQIHAVKVVANLAAEDINQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMNEMNQGLIMSRGGGQLLA 436 (600)
Q Consensus 357 ~s~~~~vr~~Aa~aL~nLa~~~~~~~~iv~~G~I~~Lv~lL~~~~~~~v~~~Al~aL~NLa~~~~~r~~I~~~G~I~~Lv 436 (600)
.++.|...-.|..++...+.....-..+... .+...+..+..+..+.++-.|+.+++..+...... . ...+.+..|.
T Consensus 460 ~~e~P~Ll~Ra~~~i~~fs~~~~~~~~~~~~-fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~~~vl~-~-~~p~ild~L~ 536 (1005)
T KOG2274|consen 460 YQESPFLLLRAFLTISKFSSSTVINPQLLQH-FLNATVNALTMDVPPPVKISAVRAFCGYCKVKVLL-S-LQPMILDGLL 536 (1005)
T ss_pred cccCHHHHHHHHHHHHHHHhhhccchhHHHH-HHHHHHHhhccCCCCchhHHHHHHHHhccCceecc-c-cchHHHHHHH
Confidence 4566776667777777555422222222222 24445555554556667777888777777321111 0 1144566677
Q ss_pred hhhccCCCHHHHHHHHHHHHHHhCCchhHHHHHHcChHHHHHHHH--cCCCHHHHHHHHHHHHHhhcCCchhhhhcchhh
Q 007520 437 KTASKTDDPQTLRMVAGALANLCGNEKLHTMLEEDGAIKALLAMV--RSGNIDVIAQVARGLANFAKCESRAIVQGQRKG 514 (600)
Q Consensus 437 ~lL~~~~~~~v~~~Aa~aL~nLa~~~e~r~~i~~~G~i~~Lv~lL--~s~~~~v~~~A~~aL~nLa~~~~~~~~q~~~~~ 514 (600)
.+... .+.++......+|+..|..+.-.....+.-..|.++.++ .+.+|.|...+-.++-.|+... .+
T Consensus 537 qlas~-~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~---------~~ 606 (1005)
T KOG2274|consen 537 QLASK-SSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIA---------AN 606 (1005)
T ss_pred HHccc-ccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHH---------Hh
Confidence 77654 344777777789999986554444445566777777665 3778877666666666665321 11
Q ss_pred HHHHHhCCcHHHHHHhhcCCC----HHHHHHHHHHHHHhhc--CchhHHHHHHcccHHHHHHhhhcCChHHHHHHHHHHH
Q 007520 515 RSHLMEDSALEWLIANSKTNS----ASTRRHVELALCHLAQ--NEDNARDFISRGGAKELVQISIESSREDIRNLAKKTM 588 (600)
Q Consensus 515 r~~l~e~g~l~~Lv~Ll~s~~----~~v~~~Aa~aL~nLa~--~~~~~~~lv~~G~l~~Lv~ll~~~~~~~ir~~A~~~L 588 (600)
..-+ ....+|.|+..+..++ +....-|...|..+.. .++.-..++.. +.|++.++.-.++....-+.+-..|
T Consensus 607 ~g~m-~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~-~FpaVak~tlHsdD~~tlQ~~~EcL 684 (1005)
T KOG2274|consen 607 YGPM-QERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICY-AFPAVAKITLHSDDHETLQNATECL 684 (1005)
T ss_pred hcch-HHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHH-HhHHhHhheeecCChHHHHhHHHHH
Confidence 1112 2357888888877654 5566666666665543 23333333333 6677777765555444444444433
No 282
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=87.94 E-value=32 Score=34.69 Aligned_cols=44 Identities=20% Similarity=0.259 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHH
Q 007520 224 HELCVKLKETRQLHESAVYEVQTLKSEYKNLLEEKETMSDELQA 267 (600)
Q Consensus 224 ~~l~~~~~d~~~~~e~~~~el~~l~~~~~~l~~~~~~~~~el~~ 267 (600)
..++..+..+...+......+......+..|.+....+.++|..
T Consensus 172 ~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~ 215 (237)
T PF00261_consen 172 DEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEK 215 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555543333333333333444444444444443
No 283
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=87.74 E-value=20 Score=42.15 Aligned_cols=35 Identities=20% Similarity=0.296 Sum_probs=21.0
Q ss_pred hhhhHHHHHHHHHHhHhHHHhhhhhHHHHHHHHHH
Q 007520 175 TQLYEKKIAELNKKLEDEHACFEGAVEQLDMVKKL 209 (600)
Q Consensus 175 ~~~~~~~~~~l~~~l~~e~~~~~~~~~~~~~~~~~ 209 (600)
+..-+.|...++.+|..+.......-.+++.+++.
T Consensus 680 ~~L~~~Q~~~I~~iL~~~~~~I~~~v~~ik~i~~~ 714 (717)
T PF10168_consen 680 IVLSESQKRTIKEILKQQGEEIDELVKQIKNIKKI 714 (717)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34556677777777776666555555555554443
No 284
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=87.68 E-value=61 Score=37.57 Aligned_cols=12 Identities=42% Similarity=0.462 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHH
Q 007520 46 ELEKLLRECQIS 57 (600)
Q Consensus 46 ~~~~~~~~~~~~ 57 (600)
+||+.+.+.++.
T Consensus 54 eLE~sL~eLk~q 65 (617)
T PF15070_consen 54 ELERSLSELKNQ 65 (617)
T ss_pred HHHHHHHHHHHh
Confidence 444444444433
No 285
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=87.57 E-value=66 Score=37.83 Aligned_cols=59 Identities=22% Similarity=0.219 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHhhhHHHHhhhhHHHHHHHHh
Q 007520 232 ETRQLHESAVYEVQTLKSEYKNLLEEKETMSDELQAARQRLLVEEKQRKAIEYELVKLK 290 (600)
Q Consensus 232 d~~~~~e~~~~el~~l~~~~~~l~~~~~~~~~el~~~~~~l~~e~~~~~~le~~~~~l~ 290 (600)
-+..++..+.+|+.-+.+++.+..+-+.-...-|..-...+..|..++..++.++....
T Consensus 125 ~~Khei~rl~Ee~~~l~~qlee~~rLk~iae~qleEALesl~~EReqk~~LrkEL~~~~ 183 (717)
T PF09730_consen 125 GLKHEIKRLEEEIELLNSQLEEAARLKEIAEKQLEEALESLKSEREQKNALRKELDQHL 183 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33344444444444455554443333332222222223335567777788887777743
No 286
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=87.48 E-value=16 Score=39.95 Aligned_cols=23 Identities=22% Similarity=0.304 Sum_probs=17.0
Q ss_pred hhhhhhhHHHHHHHHHHhHhHHH
Q 007520 172 ADTTQLYEKKIAELNKKLEDEHA 194 (600)
Q Consensus 172 ~~~~~~~~~~~~~l~~~l~~e~~ 194 (600)
+++...+.++|.||+.+|.|=..
T Consensus 427 ~~~~~s~d~~I~dLqEQlrDlmf 449 (493)
T KOG0804|consen 427 KEALGSKDEKITDLQEQLRDLMF 449 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHhHhe
Confidence 35777888888888888876533
No 287
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=87.47 E-value=42 Score=35.49 Aligned_cols=109 Identities=17% Similarity=0.199 Sum_probs=53.3
Q ss_pred HHHHHHHHHHh---HHHHHHHHhhhccHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhchhH---HHHHH
Q 007520 20 RKLETQVDHLT---AEIERKQKLRENDKCELEKLLRECQISYDEAKDNLVTQVELLTAKIEMQQKLRENDKY---EFEKQ 93 (600)
Q Consensus 20 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 93 (600)
|||+.-.+-|. .|.|.-+.-++ +.......-+.+.+..++++. .+..+.....++.- .-...
T Consensus 2 rKL~SK~eAL~IL~~eLe~cq~ErD----qyKlMAEqLqer~q~LKkk~~--------el~~~~~~~~d~~~~~~~~~~~ 69 (319)
T PF09789_consen 2 RKLQSKSEALLILSQELEKCQSERD----QYKLMAEQLQERYQALKKKYR--------ELIQEAAGFGDPSIPPEKENKN 69 (319)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH--------HhhhhhcccCCccCCcccchhh
Confidence 45555555553 55555555442 333333345555555555443 11111111111000 12234
Q ss_pred HHHHHhhhHHHHHHHHHhHHHHHHHhhhHHHHHHHHHhhhhhhhhhh
Q 007520 94 LRESQISYDESMRNLVTRSEFLEKENAHLELEVEKILGELNHQKDQN 140 (600)
Q Consensus 94 ~~~~~~~~~~~~~~l~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 140 (600)
+...-.+|.+..+.|...++.|++....+.+.++=|+..+..++...
T Consensus 70 La~lL~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~ 116 (319)
T PF09789_consen 70 LAQLLSESREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQRVGD 116 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhh
Confidence 44444556666666666666666666666666666666665555443
No 288
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=87.16 E-value=3 Score=48.73 Aligned_cols=161 Identities=14% Similarity=0.147 Sum_probs=104.4
Q ss_pred HHHHHHcCCHHHHHHHHccCC-------CHHHHHHHHHHHHHhhcCCccHHHHHHh--------CchhhhHhhhcc--C-
Q 007520 381 QEKIVEEGGLDALLLLLRTSQ-------NTTILRVASGAIANLAMNEMNQGLIMSR--------GGGQLLAKTASK--T- 442 (600)
Q Consensus 381 ~~~iv~~G~I~~Lv~lL~~~~-------~~~v~~~Al~aL~NLa~~~~~r~~I~~~--------G~I~~Lv~lL~~--~- 442 (600)
...+.+.|++..++.+....+ -.++...|+++|.-+..-|+.+..++.. .||..|+..... +
T Consensus 594 aenflkls~v~~~L~l~~~~~~w~~~spR~d~~~~Al~vL~i~t~iP~iq~~La~~~~~n~~aydGiaIiL~~a~g~~~i 673 (1516)
T KOG1832|consen 594 AENFLKLSGVVTMLELCQTPPVWRYLSPRHDLLQYALGVLHIVTSIPDIQKALAHATLSNNRAYDGIAIILDAANGSNSI 673 (1516)
T ss_pred HHHHHHhHHHHHHHHHHhcCccccccCcchHHHHHHHhheeeeEecchHHHHHHHHHhhcccccCceEEEeecccccccc
Confidence 455777888888888776432 2356677888887777779999888763 367776655422 2
Q ss_pred CCHHHHHHHHHHHHHHh-CCchhHHHHHHc----ChHHHHHHHHc-CCCHHHHHHHHHHHHHhhcCCchhhhhcchhhHH
Q 007520 443 DDPQTLRMVAGALANLC-GNEKLHTMLEED----GAIKALLAMVR-SGNIDVIAQVARGLANFAKCESRAIVQGQRKGRS 516 (600)
Q Consensus 443 ~~~~v~~~Aa~aL~nLa-~~~e~r~~i~~~----G~i~~Lv~lL~-s~~~~v~~~A~~aL~nLa~~~~~~~~q~~~~~r~ 516 (600)
-+|.++..|+.+|-|+. ..|+.+...+.. .+-+.. .+. ........+.++-+|+-
T Consensus 674 ~Dpei~~~AL~vIincVc~pp~~r~s~i~~v~S~~g~~r~--~l~~~~ks~~le~~l~~mw~~----------------- 734 (1516)
T KOG1832|consen 674 VDPEIIQPALNVIINCVCPPPTTRPSTIVAVGSQSGDRRI--FLGAGTKSAKLEQVLRQMWEA----------------- 734 (1516)
T ss_pred cCHHHHHHHHhhhheeecCCCCcchhhhhhccccCCCccc--cccCCCchHHHHHHHHHHHHH-----------------
Confidence 38899999999999985 445666543210 010100 111 11122334444444443
Q ss_pred HHHhCCcHHHHHHhhcCC-----CHHHHHHHHHHHHHhhcCchhHHHHHH
Q 007520 517 HLMEDSALEWLIANSKTN-----SASTRRHVELALCHLAQNEDNARDFIS 561 (600)
Q Consensus 517 ~l~e~g~l~~Lv~Ll~s~-----~~~v~~~Aa~aL~nLa~~~~~~~~lv~ 561 (600)
+....||..|+.+++-. ...++..||.+|.-|+.++..++.+..
T Consensus 735 -Vr~ndGIkiLl~Ll~~k~P~t~aD~IRalAc~~L~GLaR~~tVrQIltK 783 (1516)
T KOG1832|consen 735 -VRGNDGIKILLKLLQYKNPPTTADCIRALACRVLLGLARDDTVRQILTK 783 (1516)
T ss_pred -HhcCccHHHHHHHHhccCCCCcHHHHHHHHHHHHhccccCcHHHHHHHh
Confidence 44467999999987653 356899999999999999998887764
No 289
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=87.00 E-value=44 Score=35.25 Aligned_cols=229 Identities=21% Similarity=0.239 Sum_probs=0.0
Q ss_pred hHHHhHHHHHHHHHHhHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhchhHHHHHHH
Q 007520 15 YESLCRKLETQVDHLTAEIERKQKLRENDKCELEKLLRECQISYDEAKDNLVTQVELLTAKIEMQQKLRENDKYEFEKQL 94 (600)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (600)
+++|||-|..+=..+..|+-+..+.-+ ..=.-...--+.+|.+... .++.+...+.+..-+++.
T Consensus 76 LE~LCRELQk~Nk~lkeE~~~~~~eee---~kR~el~~kFq~~L~dIq~-------------~~ee~~~~~~k~~~eN~~ 139 (309)
T PF09728_consen 76 LESLCRELQKQNKKLKEESKRRAREEE---EKRKELSEKFQATLKDIQA-------------QMEEQSERNIKLREENEE 139 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH-------------HHHhccchhHHHHHHHHH
Q ss_pred HHHHhhhHHHHHHHHHhHH----HHHHHhhhHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHhhhhhhhhhhhhhHHhhh
Q 007520 95 RESQISYDESMRNLVTRSE----FLEKENAHLELEVEKILGELNHQKDQNNLKREKIVQLEISLKNSKQYEMENSTYQKA 170 (600)
Q Consensus 95 ~~~~~~~~~~~~~l~~~~~----~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~ 170 (600)
. .+-++.+..+|+ -+.+-.++.++|+.=...-+.++.........+...
T Consensus 140 L------~eKlK~l~eQye~rE~~~~~~~k~keLE~Ql~~AKl~q~~~~~~~e~~k~~~--------------------- 192 (309)
T PF09728_consen 140 L------REKLKSLIEQYELREEHFEKLLKQKELEVQLAEAKLEQQQEEAEQEKEKAKQ--------------------- 192 (309)
T ss_pred H------HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHH---------------------
Q ss_pred hhhhhhhhHHHHHHHHHHhHhHHHhhhhhHHHHHHHHHHHhhhhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007520 171 LADTTQLYEKKIAELNKKLEDEHACFEGAVEQLDMVKKLLSDYQNSNQGQKEVHELCVKLKETRQLHESAVYEVQTLKSE 250 (600)
Q Consensus 171 l~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~~~~~~~~~~~q~~~~~~~e~~~l~~~~~d~~~~~e~~~~el~~l~~~ 250 (600)
...-.-.+.+.+....+.|...+.....=.+..+.+...+.+|+..=. ++....+.+...+.++..|-..++..
T Consensus 193 ---~~~~~l~~~~~~~~~~~~E~~Lr~QL~~Y~~Kf~efq~tL~kSNe~F~---tfk~Emekm~Kk~kklEKE~~~~k~k 266 (309)
T PF09728_consen 193 ---EKEILLEEAAQVQTLKETEKELREQLNLYSEKFEEFQDTLNKSNEVFE---TFKKEMEKMSKKIKKLEKENQTWKSK 266 (309)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHhhhhchHHHHHHHHhhhHHHHhhhhHHHHHHHHhcc
Q 007520 251 YKNLLEEKETMSDELQAARQRLLVEEKQRKAIEYELVKLKKT 292 (600)
Q Consensus 251 ~~~l~~~~~~~~~el~~~~~~l~~e~~~~~~le~~~~~l~~~ 292 (600)
..+--...-.+.+|=..+...+..-..+..+++....++...
T Consensus 267 ~e~~n~~l~~m~eer~~~~~~~~~~~~k~~kLe~LcRaLQ~e 308 (309)
T PF09728_consen 267 WEKSNKALIEMAEERQKLEKELEKLKKKIEKLEKLCRALQAE 308 (309)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
No 290
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=86.93 E-value=26 Score=38.45 Aligned_cols=187 Identities=18% Similarity=0.168 Sum_probs=112.6
Q ss_pred CHHHHHHhh-CCCCHHHHHHHHHHHHHhhC-CcchHHHHHHcCCHHHHHHHHccCC----CHHHHHHHHHHHHHhhcC-C
Q 007520 348 GLPKILQLL-TSEDPDVQIHAVKVVANLAA-EDINQEKIVEEGGLDALLLLLRTSQ----NTTILRVASGAIANLAMN-E 420 (600)
Q Consensus 348 gV~~Lv~LL-~s~~~~vr~~Aa~aL~nLa~-~~~~~~~iv~~G~I~~Lv~lL~~~~----~~~v~~~Al~aL~NLa~~-~ 420 (600)
-+..++.+. .+.++..+..++.+++.++. .+... ..+ +.+..+...+.... .........|....|... .
T Consensus 190 ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~--~l~-~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~ 266 (415)
T PF12460_consen 190 LLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDD--DLD-EFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGH 266 (415)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChh--hHH-HHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCC
Confidence 355666554 45568888889999988875 22211 111 12333333331111 223344455555555543 2
Q ss_pred ccHHHHHHhCchhhhHhhhccCCCHHHHHHHHHHHHHHhCC-chh--------HHHHHH----cChHHHHHHHHcCCCHH
Q 007520 421 MNQGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLCGN-EKL--------HTMLEE----DGAIKALLAMVRSGNID 487 (600)
Q Consensus 421 ~~r~~I~~~G~I~~Lv~lL~~~~~~~v~~~Aa~aL~nLa~~-~e~--------r~~i~~----~G~i~~Lv~lL~s~~~~ 487 (600)
..-. ..+..|+.+|. ++.+-..++.++.-|..+ ++. ...+.. ...+|.|+...+..+..
T Consensus 267 ~~~~-----~~~~~L~~lL~---~~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~ 338 (415)
T PF12460_consen 267 PLAT-----ELLDKLLELLS---SPELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDE 338 (415)
T ss_pred chHH-----HHHHHHHHHhC---ChhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChh
Confidence 2111 13455777773 367778888888877765 332 111222 23567777777776666
Q ss_pred HHHHHHHHHHHhhcCCchhhhhcchhhHHHHHhCCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCc
Q 007520 488 VIAQVARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSKTNSASTRRHVELALCHLAQNE 553 (600)
Q Consensus 488 v~~~A~~aL~nLa~~~~~~~~q~~~~~r~~l~e~g~l~~Lv~Ll~s~~~~v~~~Aa~aL~nLa~~~ 553 (600)
.+...+.||+++..+-|.... ...+ ...+|.|++-+..+++.++..+..+|..+....
T Consensus 339 ~k~~yL~ALs~ll~~vP~~vl------~~~l--~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~ 396 (415)
T PF12460_consen 339 IKSNYLTALSHLLKNVPKSVL------LPEL--PTLLPLLLQSLSLPDADVLLSSLETLKMILEEA 396 (415)
T ss_pred hHHHHHHHHHHHHhhCCHHHH------HHHH--HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC
Confidence 888899999999877553221 1111 357899999899999999999999999987665
No 291
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=86.89 E-value=39 Score=34.57 Aligned_cols=77 Identities=16% Similarity=0.174 Sum_probs=56.6
Q ss_pred hhhhhhhhhhHHHHHHHHHHhhhhh-hhhhhhhhHHhhhhhhhhhhhHHHHHHHHHHhHhHHHhhhhhHHHHHHHHHH
Q 007520 133 LNHQKDQNNLKREKIVQLEISLKNS-KQYEMENSTYQKALADTTQLYEKKIAELNKKLEDEHACFEGAVEQLDMVKKL 209 (600)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~n~~~~~~l~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~~~~~~~ 209 (600)
+..++............|-...+.. ...+.+|......+.+....|..++.||...|..-......|++-...-+..
T Consensus 144 f~~~~~~Ae~El~~A~~LL~~v~~~~~~~~~~~~~l~~~i~~~L~~~~~kL~Dl~~~l~eA~~~~~ea~~ln~~n~~~ 221 (264)
T PF06008_consen 144 FTPQRQNAEDELKEAEDLLSRVQKWFQKPQQENESLAEAIRDDLNDYNAKLQDLRDLLNEAQNKTREAEDLNRANQKN 221 (264)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555556566666666666664 6667899999999999999999999999999997766666665554443333
No 292
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=86.67 E-value=10 Score=39.48 Aligned_cols=169 Identities=17% Similarity=0.181 Sum_probs=104.6
Q ss_pred CHHHHH-HhhCCCCHHHHHHHHHHHHHhhCCcchHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcCC--ccHH
Q 007520 348 GLPKIL-QLLTSEDPDVQIHAVKVVANLAAEDINQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMNE--MNQG 424 (600)
Q Consensus 348 gV~~Lv-~LL~s~~~~vr~~Aa~aL~nLa~~~~~~~~iv~~G~I~~Lv~lL~~~~~~~v~~~Al~aL~NLa~~~--~~r~ 424 (600)
-++.|+ ..+.+.++.+|..|..+|+-++.-+. .+... .++.+...+. ..+..++..|+.++..+.... ..-.
T Consensus 27 ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~---~~a~~-~l~l~~~~~~-~~~~~v~~~al~~l~Dll~~~g~~~~~ 101 (298)
T PF12719_consen 27 LLDSLILPAVQSSDPAVRELALKCLGLCCLLDK---ELAKE-HLPLFLQALQ-KDDEEVKITALKALFDLLLTHGIDIFD 101 (298)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCh---HHHHH-HHHHHHHHHH-hCCHHHHHHHHHHHHHHHHHcCchhcc
Confidence 345555 77789999999999999998887332 12222 3666777775 458889999999999987541 1111
Q ss_pred H-------HHHhCchhhhHhhhccCCCHHHHHHHHHHHHHHhCCchhHHHHHHcChHHHHHHH-Hc---CCCHHHHHHHH
Q 007520 425 L-------IMSRGGGQLLAKTASKTDDPQTLRMVAGALANLCGNEKLHTMLEEDGAIKALLAM-VR---SGNIDVIAQVA 493 (600)
Q Consensus 425 ~-------I~~~G~I~~Lv~lL~~~~~~~v~~~Aa~aL~nLa~~~e~r~~i~~~G~i~~Lv~l-L~---s~~~~v~~~A~ 493 (600)
. ....+.+..+...+.. .++.++..|+..++.|--...... ...++..|+-+ .. .+++.++..-.
T Consensus 102 ~~~~~~~~~~~~~l~~~l~~~l~~-~~~~~~~~a~EGl~KLlL~~~i~~---~~~vL~~Lll~yF~p~t~~~~~LrQ~L~ 177 (298)
T PF12719_consen 102 SESDNDESVDSKSLLKILTKFLDS-ENPELQAIAVEGLCKLLLSGRISD---PPKVLSRLLLLYFNPSTEDNQRLRQCLS 177 (298)
T ss_pred chhccCccchHhHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHcCcccCCcHHHHHHHH
Confidence 1 1123455566777744 588899999999998753322111 12233333332 22 34566666666
Q ss_pred HHHHHhhcCCchhhhhcchhhHHHHHhCCcHHHHHHhhcCC
Q 007520 494 RGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSKTN 534 (600)
Q Consensus 494 ~aL~nLa~~~~~~~~q~~~~~r~~l~e~g~l~~Lv~Ll~s~ 534 (600)
..+-..+... +..+. .+..+.+|.+..++...
T Consensus 178 ~Ffp~y~~s~--------~~~Q~-~l~~~f~~~l~~~~~~~ 209 (298)
T PF12719_consen 178 VFFPVYASSS--------PENQE-RLAEAFLPTLRTLSNAP 209 (298)
T ss_pred HHHHHHHcCC--------HHHHH-HHHHHHHHHHHHHHhCc
Confidence 7777777654 23333 44566777777766553
No 293
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=86.65 E-value=6.7 Score=44.48 Aligned_cols=89 Identities=19% Similarity=0.283 Sum_probs=62.4
Q ss_pred CCHHHHHHHHHHHHHHh-CCchhHHHHHHcChHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchhhhhcchhhHHHHHhC
Q 007520 443 DDPQTLRMVAGALANLC-GNEKLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLMED 521 (600)
Q Consensus 443 ~~~~v~~~Aa~aL~nLa-~~~e~r~~i~~~G~i~~Lv~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~q~~~~~r~~l~e~ 521 (600)
+++.+.+.|+..|.... ..|+... .++.+++.+..+.+..||..|.+.|..+|.++++...
T Consensus 34 g~~k~K~Laaq~I~kffk~FP~l~~-----~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~------------- 95 (556)
T PF05918_consen 34 GSPKEKRLAAQFIPKFFKHFPDLQE-----EAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVS------------- 95 (556)
T ss_dssp S-HHHHHHHHHHHHHHHCC-GGGHH-----HHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HH-------------
T ss_pred CCHHHHHHHHHHHHHHHhhChhhHH-----HHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHh-------------
Confidence 46788888888887765 5577766 4778999999999999999999999999988765433
Q ss_pred CcHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 007520 522 SALEWLIANSKTNSASTRRHVELALCHL 549 (600)
Q Consensus 522 g~l~~Lv~Ll~s~~~~v~~~Aa~aL~nL 549 (600)
.++..|+.+|.++++.-...+-.+|..|
T Consensus 96 kvaDvL~QlL~tdd~~E~~~v~~sL~~l 123 (556)
T PF05918_consen 96 KVADVLVQLLQTDDPVELDAVKNSLMSL 123 (556)
T ss_dssp HHHHHHHHHTT---HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 3678899999998877766666666555
No 294
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=86.41 E-value=2.1 Score=36.13 Aligned_cols=63 Identities=24% Similarity=0.386 Sum_probs=42.9
Q ss_pred cHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHhhh
Q 007520 43 DKCELEKLLRECQISYDEAKDNLVTQVELLTAKIEMQQKLRENDKYEFEKQLRESQISYDESMRNLVTRSEFLEKENAH 121 (600)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~e~~~ 121 (600)
|-|-+|..+..|..++..+++++. -...+..+...+|+|+. .-++.+.+.++++..|++||+.
T Consensus 6 eId~lEekl~~cr~~le~ve~rL~------------~~eLs~e~R~~lE~E~~----~l~~~l~~~E~eL~~LrkENrK 68 (85)
T PF15188_consen 6 EIDGLEEKLAQCRRRLEAVESRLR------------RRELSPEARRSLEKELN----ELKEKLENNEKELKLLRKENRK 68 (85)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHc------------ccCCChHHHHHHHHHHH----HHHHHhhccHHHHHHHHHhhhh
Confidence 457788889999999999999774 12233444578888876 3445555666666677777764
No 295
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=86.40 E-value=3.7 Score=47.26 Aligned_cols=116 Identities=21% Similarity=0.108 Sum_probs=71.8
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcchHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcCCccHHHHHHhCchhhhH
Q 007520 357 TSEDPDVQIHAVKVVANLAAEDINQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMNEMNQGLIMSRGGGQLLA 436 (600)
Q Consensus 357 ~s~~~~vr~~Aa~aL~nLa~~~~~~~~iv~~G~I~~Lv~lL~~~~~~~v~~~Al~aL~NLa~~~~~r~~I~~~G~I~~Lv 436 (600)
+..+.+||+.|+.+|+-++..++. .+|..|.+|..+.++.++..++.||.-.|....++.+ |..|-
T Consensus 565 sD~nDDVrRaAVialGFVl~~dp~--------~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~eA------i~lLe 630 (929)
T KOG2062|consen 565 SDVNDDVRRAAVIALGFVLFRDPE--------QLPSTVSLLSESYNPHVRYGAAMALGIACAGTGLKEA------INLLE 630 (929)
T ss_pred cccchHHHHHHHHHheeeEecChh--------hchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHHH------HHHHh
Confidence 345677777777777765553332 2577788888888999999999999988877665554 34444
Q ss_pred hhhccCCCHHHHHHHHHHHHHHh--CCchhHHHHHHcChHHHHHHHHcCCCHHHH
Q 007520 437 KTASKTDDPQTLRMVAGALANLC--GNEKLHTMLEEDGAIKALLAMVRSGNIDVI 489 (600)
Q Consensus 437 ~lL~~~~~~~v~~~Aa~aL~nLa--~~~e~r~~i~~~G~i~~Lv~lL~s~~~~v~ 489 (600)
.+..+ +..-|+..|+-+++-+. .++..+... .|....+..++...+.+..
T Consensus 631 pl~~D-~~~fVRQgAlIa~amIm~Q~t~~~~pkv--~~frk~l~kvI~dKhEd~~ 682 (929)
T KOG2062|consen 631 PLTSD-PVDFVRQGALIALAMIMIQQTEQLCPKV--NGFRKQLEKVINDKHEDGM 682 (929)
T ss_pred hhhcC-hHHHHHHHHHHHHHHHHHhcccccCchH--HHHHHHHHHHhhhhhhHHH
Confidence 55532 33346666666666553 333333322 2345566666665555543
No 296
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=86.39 E-value=35 Score=36.03 Aligned_cols=52 Identities=21% Similarity=0.155 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHhhhchhHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHhhhHH
Q 007520 68 QVELLTAKIEMQQKLRENDKYEFEKQLRESQISYDESMRNLVTRSEFLEKENAHLE 123 (600)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~e~~~~~ 123 (600)
-++.|+..+......-.+|...|.+...... +-+-.+..++..|..|.+.|.
T Consensus 141 llegLk~~L~~~~~~l~~D~~~L~~~~~~l~----~~~~~l~~~~~~L~~e~~~L~ 192 (312)
T smart00787 141 LLEGLKEGLDENLEGLKEDYKLLMKELELLN----SIKPKLRDRKDALEEELRQLK 192 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 4677777777777776666666655554443 333344444444444444443
No 297
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=86.38 E-value=17 Score=40.85 Aligned_cols=175 Identities=12% Similarity=0.094 Sum_probs=110.4
Q ss_pred HHHHHHHHccCCCHHHHHHHHHHHHHhhcCCccHHHHHHhCchhhhHhhhccCCC---HHHHHHHHHHHHHHhCCchhHH
Q 007520 390 LDALLLLLRTSQNTTILRVASGAIANLAMNEMNQGLIMSRGGGQLLAKTASKTDD---PQTLRMVAGALANLCGNEKLHT 466 (600)
Q Consensus 390 I~~Lv~lL~~~~~~~v~~~Al~aL~NLa~~~~~r~~I~~~G~I~~Lv~lL~~~~~---~~v~~~Aa~aL~nLa~~~e~r~ 466 (600)
...++.++. +++...+..+..-|..|+.++.....++...|+..|..++.+... ..+....+.++..|....-.-=
T Consensus 85 a~~i~e~l~-~~~~~~~~~a~k~l~sls~d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvsW 163 (713)
T KOG2999|consen 85 AKRIMEILT-EGNNISKMEALKELDSLSLDPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVSW 163 (713)
T ss_pred HHHHHHHHh-CCCcHHHHHHHHHHhhccccHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceeee
Confidence 344566666 334444555888899999999999999999999999999865332 2344444445444321100000
Q ss_pred HHHHcChHHHHHHHH--cCCCHHHHHHHHHHHHHhhcCCchhhhhcchhhHHHHHhCCcHHHHHHhhcCCCHHHHHHHHH
Q 007520 467 MLEEDGAIKALLAMV--RSGNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSKTNSASTRRHVEL 544 (600)
Q Consensus 467 ~i~~~G~i~~Lv~lL--~s~~~~v~~~A~~aL~nLa~~~~~~~~q~~~~~r~~l~e~g~l~~Lv~Ll~s~~~~v~~~Aa~ 544 (600)
..+...+|.....+. ...+..+...|+..|-++..++ ...+..+.++--++.|+..+...+..++..|..
T Consensus 164 ~~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s--------~~~~~~v~eev~i~~li~hlq~~n~~i~~~aia 235 (713)
T KOG2999|consen 164 ESVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGS--------DTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIA 235 (713)
T ss_pred eecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCC--------hHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHH
Confidence 001122333344443 2345567778888998888775 345667778889999999999999999999777
Q ss_pred HHHHhhc--CchhHHHHHHcccHHHHHHhhh
Q 007520 545 ALCHLAQ--NEDNARDFISRGGAKELVQISI 573 (600)
Q Consensus 545 aL~nLa~--~~~~~~~lv~~G~l~~Lv~ll~ 573 (600)
.+-.|.. .++.+..+...-....+..++.
T Consensus 236 l~nal~~~a~~~~R~~~~~~l~~~~~R~ai~ 266 (713)
T KOG2999|consen 236 LLNALFRKAPDDKRFEMAKSLEQKQFRNAIH 266 (713)
T ss_pred HHHHHHhhCChHHHHHHHHHHHHHHHHHHHH
Confidence 7766643 4445666665433344444443
No 298
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.18 E-value=25 Score=40.60 Aligned_cols=183 Identities=14% Similarity=0.132 Sum_probs=110.8
Q ss_pred HHhhCCCCHHHHHHHHHHHHHhhC--Ccch----HHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcC--CccHH
Q 007520 353 LQLLTSEDPDVQIHAVKVVANLAA--EDIN----QEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMN--EMNQG 424 (600)
Q Consensus 353 v~LL~s~~~~vr~~Aa~aL~nLa~--~~~~----~~~iv~~G~I~~Lv~lL~~~~~~~v~~~Al~aL~NLa~~--~~~r~ 424 (600)
.+-|+..|..||..|+..+.++-- +|+. ...+++. -...|.++|+ ++-+.++..|..-++....- +-...
T Consensus 180 ~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~k-Qf~~l~~LL~-d~~p~VRS~a~~gv~k~~s~fWe~iP~ 257 (1005)
T KOG1949|consen 180 WRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQK-QFEELYSLLE-DPYPMVRSTAILGVCKITSKFWEMIPP 257 (1005)
T ss_pred HHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHH-HHHHHHHHhc-CCCchHHHHHHHHHHHHHHHHHHHcCH
Confidence 355678899999999999998653 4433 4455544 4677888898 66777777766554444321 22222
Q ss_pred HHHHhCchhhhHhhhccCCCHHHHHHHHHHHHHHhCCchhHHHHHHcChHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCc
Q 007520 425 LIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLCGNEKLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFAKCES 504 (600)
Q Consensus 425 ~I~~~G~I~~Lv~lL~~~~~~~v~~~Aa~aL~nLa~~~e~r~~i~~~G~i~~Lv~lL~s~~~~v~~~A~~aL~nLa~~~~ 504 (600)
.|+.. .+..+..-+......+|+.++...|-.+..+|.....+- -++|+|=..|++....|+.++...|.-+-...
T Consensus 258 ~i~~~-ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~sh~~le--~~Lpal~~~l~D~se~VRvA~vd~ll~ik~vr- 333 (1005)
T KOG1949|consen 258 TILID-LLKKITDELAFDTSSDVRCSVFKGLPMILDNPLSHPLLE--QLLPALRYSLHDNSEKVRVAFVDMLLKIKAVR- 333 (1005)
T ss_pred HHHHH-HHHHHHHHhhhccchheehhHhcCcHHHHcCccchhHHH--HHHHhcchhhhccchhHHHHHHHHHHHHHhhh-
Confidence 22221 233444444343455788888888888888775544332 25566666778888999999888888774221
Q ss_pred hhhhhcchhhHHHHHhCCcHHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 007520 505 RAIVQGQRKGRSHLMEDSALEWLIANSKTNSASTRRHVELALCHLAQ 551 (600)
Q Consensus 505 ~~~~q~~~~~r~~l~e~g~l~~Lv~Ll~s~~~~v~~~Aa~aL~nLa~ 551 (600)
+ -.+..---...++.-+..++.++.+..+..+.+.+.
T Consensus 334 -a---------~~f~~I~~~d~~l~~L~~d~~~v~rr~~~li~~s~l 370 (1005)
T KOG1949|consen 334 -A---------AKFWKICPMDHILVRLETDSRPVSRRLVSLIFNSFL 370 (1005)
T ss_pred -h---------hhhhccccHHHHHHHHhccccHHHHHHHHHHHHhhc
Confidence 0 012222233455555555666666666666666543
No 299
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=85.94 E-value=28 Score=38.67 Aligned_cols=28 Identities=25% Similarity=0.287 Sum_probs=22.8
Q ss_pred HHHHHHhHHHHHHHhhhHHHHHHHHHhh
Q 007520 105 MRNLVTRSEFLEKENAHLELEVEKILGE 132 (600)
Q Consensus 105 ~~~l~~~~~~~~~e~~~~~~~~~~~~~~ 132 (600)
..-|-.+++-+++||.+|+.+..-++-+
T Consensus 161 ~EaL~ekLk~~~een~~lr~k~~llk~E 188 (596)
T KOG4360|consen 161 LEALQEKLKPLEEENTQLRSKAMLLKTE 188 (596)
T ss_pred HHHHHhhcCChHHHHHHHHHHHHHHHhh
Confidence 3467889999999999999998776654
No 300
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=85.75 E-value=28 Score=42.64 Aligned_cols=167 Identities=12% Similarity=0.090 Sum_probs=99.8
Q ss_pred CCHHHHHHHHHHHHHhhC--CcchHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcC-----CccHHHHHHhCc
Q 007520 359 EDPDVQIHAVKVVANLAA--EDINQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMN-----EMNQGLIMSRGG 431 (600)
Q Consensus 359 ~~~~vr~~Aa~aL~nLa~--~~~~~~~iv~~G~I~~Lv~lL~~~~~~~v~~~Al~aL~NLa~~-----~~~r~~I~~~G~ 431 (600)
.....+..|+..|..|+. +++++ ++. ++|.++.++. ++...|+..|+.+|+.+... +.+...+.+- .
T Consensus 435 k~~~tK~~ALeLl~~lS~~i~de~~---LDR-VlPY~v~l~~-Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eY-l 508 (1431)
T KOG1240|consen 435 KTIQTKLAALELLQELSTYIDDEVK---LDR-VLPYFVHLLM-DSEADVRATALETLTELLALVRDIPPSDANIFPEY-L 508 (1431)
T ss_pred hcchhHHHHHHHHHHHhhhcchHHH---Hhh-hHHHHHHHhc-CchHHHHHHHHHHHHHHHhhccCCCcccchhhHhh-h
Confidence 346678889999998886 33332 222 6899999998 77888999999988887643 3344444443 6
Q ss_pred hhhhHhhhccCCCHHHHHHHHHHHHHHhC-------------------Cchh-----------HHHHHHcChHHHHHHHH
Q 007520 432 GQLLAKTASKTDDPQTLRMVAGALANLCG-------------------NEKL-----------HTMLEEDGAIKALLAMV 481 (600)
Q Consensus 432 I~~Lv~lL~~~~~~~v~~~Aa~aL~nLa~-------------------~~e~-----------r~~i~~~G~i~~Lv~lL 481 (600)
+|.|-.++.++...-++..-|.+|+.||. +++. ...+ -.++-..++.++
T Consensus 509 fP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L-~~~V~~~v~sLl 587 (1431)
T KOG1240|consen 509 FPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQAL-HHTVEQMVSSLL 587 (1431)
T ss_pred hhhhHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHH-HHHHHHHHHHHH
Confidence 77777777553333444444556666651 1111 0000 012223345556
Q ss_pred cCCCHHHHHHHHHHHHHhhcCCchhhhhcchhhHHHHHh----CCcHHHHHHhhcCCCHHHHHHHHHHHH
Q 007520 482 RSGNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLME----DSALEWLIANSKTNSASTRRHVELALC 547 (600)
Q Consensus 482 ~s~~~~v~~~A~~aL~nLa~~~~~~~~q~~~~~r~~l~e----~g~l~~Lv~Ll~s~~~~v~~~Aa~aL~ 547 (600)
.++.+-|+..-+..|.-||.. |.. .=.+++|+..|++.|..+|..--..+.
T Consensus 588 sd~~~~Vkr~Lle~i~~LC~F---------------FGk~ksND~iLshLiTfLNDkDw~LR~aFfdsI~ 642 (1431)
T KOG1240|consen 588 SDSPPIVKRALLESIIPLCVF---------------FGKEKSNDVILSHLITFLNDKDWRLRGAFFDSIV 642 (1431)
T ss_pred cCCchHHHHHHHHHHHHHHHH---------------hhhcccccchHHHHHHHhcCccHHHHHHHHhhcc
Confidence 666677777777777777753 222 235667777777777666655444443
No 301
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=85.65 E-value=2.1 Score=43.14 Aligned_cols=83 Identities=19% Similarity=0.226 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHhhcCCccHHHHHHhCchhh-------hHhhhccCCCHHHHHHHHHHHHHHhCCch-hHHHH-HHcChH
Q 007520 404 TILRVASGAIANLAMNEMNQGLIMSRGGGQL-------LAKTASKTDDPQTLRMVAGALANLCGNEK-LHTML-EEDGAI 474 (600)
Q Consensus 404 ~v~~~Al~aL~NLa~~~~~r~~I~~~G~I~~-------Lv~lL~~~~~~~v~~~Aa~aL~nLa~~~e-~r~~i-~~~G~i 474 (600)
.-++.|+.+|+.|+..+.|.+.|...+.++. |+.++....++-.++.|+..|.|||..++ .+..+ .+.++|
T Consensus 139 SPqrlaLEaLcKLsV~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~i 218 (257)
T PF12031_consen 139 SPQRLALEALCKLSVIENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPCI 218 (257)
T ss_pred CHHHHHHHHHHHhheeccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhchH
Confidence 4688999999999999999999998776654 44555556788899999999999996654 33333 467899
Q ss_pred HHHHHHHcCCCH
Q 007520 475 KALLAMVRSGNI 486 (600)
Q Consensus 475 ~~Lv~lL~s~~~ 486 (600)
..|+.++...+.
T Consensus 219 ~~Li~FiE~a~~ 230 (257)
T PF12031_consen 219 SHLIAFIEDAEQ 230 (257)
T ss_pred HHHHHHHHHHHH
Confidence 999999865433
No 302
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=85.36 E-value=98 Score=37.69 Aligned_cols=105 Identities=21% Similarity=0.139 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHhhhH---HHHHHHHHhHHHHHHHhhhHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHhhhhhhhhhhhh
Q 007520 88 YEFEKQLRESQISYD---ESMRNLVTRSEFLEKENAHLELEVEKILGELNHQKDQNNLKREKIVQLEISLKNSKQYEMEN 164 (600)
Q Consensus 88 ~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n 164 (600)
..+++++...+..|+ +....|.++.+.+++....-..++.++..++.+-++.-.++-..+.+.+.+-..+.+.-.+-
T Consensus 458 ~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~~k~~L~~~~~el~~~~ee~~~~~~~l~~~e~ii~~~~~se~~l~~~a~~l 537 (1041)
T KOG0243|consen 458 ENLEKQLKDLTELYMNQLEIKELLKEEKEKLKSKLQNKNKELESLKEELQQAKATLKEEEEIISQQEKSEEKLVDRATKL 537 (1041)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566677777777766 45556777777777777777778888777777666665555455555544444444442222
Q ss_pred hHHhhhhhhhhhhhHHHHHHHHHHhHhH
Q 007520 165 STYQKALADTTQLYEKKIAELNKKLEDE 192 (600)
Q Consensus 165 ~~~~~~l~~~~~~~~~~~~~l~~~l~~e 192 (600)
..+...-.+.++.+-+++-.+.+.-.+.
T Consensus 538 ~~~~~~s~~d~s~l~~kld~~~~~~d~n 565 (1041)
T KOG0243|consen 538 RRSLEESQDDLSSLFEKLDRKDRLDDDN 565 (1041)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhcccccc
Confidence 2222222233444444444444444333
No 303
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=85.31 E-value=68 Score=35.86 Aligned_cols=85 Identities=15% Similarity=0.125 Sum_probs=48.1
Q ss_pred HHHHHHHHHhHHHHHHHhhhHHHHHHHHHhhhhhhhh--------hhhhHHHHHHHHHHhhhhhhhhhhhhhHHhhhhhh
Q 007520 102 DESMRNLVTRSEFLEKENAHLELEVEKILGELNHQKD--------QNNLKREKIVQLEISLKNSKQYEMENSTYQKALAD 173 (600)
Q Consensus 102 ~~~~~~l~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~ 173 (600)
.+.+..+..++...+-+...++..++.+...+...+. ....+.++..+++.++......+.+|.-
T Consensus 203 ~~~l~~l~~~l~~~~~~l~~~~a~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~l~~~y~~~hP------- 275 (498)
T TIGR03007 203 YSEISEAQEELEAARLELNEAIAQRDALKRQLGGEEPVLLAGSSVANSELDGRIEALEKQLDALRLRYTDKHP------- 275 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcCcccccCCCchHHHHHHHHHHHHHHHHHhcccCh-------
Confidence 3455566666666666666666666666555432211 2335566677777777766655544422
Q ss_pred hhhhhHHHHHHHHHHhHhHH
Q 007520 174 TTQLYEKKIAELNKKLEDEH 193 (600)
Q Consensus 174 ~~~~~~~~~~~l~~~l~~e~ 193 (600)
.+.....++..|++.+.++.
T Consensus 276 ~v~~l~~qi~~l~~~l~~~~ 295 (498)
T TIGR03007 276 DVIATKREIAQLEEQKEEEG 295 (498)
T ss_pred HHHHHHHHHHHHHHHHHhhc
Confidence 33444566677776666654
No 304
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=85.09 E-value=3.5 Score=48.23 Aligned_cols=170 Identities=18% Similarity=0.192 Sum_probs=106.7
Q ss_pred HHHHHhcCCHHHHHHhhC--------CCCHHHHHHHHHHHHHhhCCcchHHHHHHc--------CCHHHHHHHHc--c-C
Q 007520 340 IAKICDEVGLPKILQLLT--------SEDPDVQIHAVKVVANLAAEDINQEKIVEE--------GGLDALLLLLR--T-S 400 (600)
Q Consensus 340 ~~~i~e~GgV~~Lv~LL~--------s~~~~vr~~Aa~aL~nLa~~~~~~~~iv~~--------G~I~~Lv~lL~--~-~ 400 (600)
...+...||+..++.+.. ++..++..+|..+|.-+..-|..+..++.. .||..++..-. . -
T Consensus 594 aenflkls~v~~~L~l~~~~~~w~~~spR~d~~~~Al~vL~i~t~iP~iq~~La~~~~~n~~aydGiaIiL~~a~g~~~i 673 (1516)
T KOG1832|consen 594 AENFLKLSGVVTMLELCQTPPVWRYLSPRHDLLQYALGVLHIVTSIPDIQKALAHATLSNNRAYDGIAIILDAANGSNSI 673 (1516)
T ss_pred HHHHHHhHHHHHHHHHHhcCccccccCcchHHHHHHHhheeeeEecchHHHHHHHHHhhcccccCceEEEeecccccccc
Confidence 345667888888887764 334567788888888888888887776632 24444433322 1 1
Q ss_pred CCHHHHHHHHHHHHHhhcC-CccHHHHHHh-C---chhhhHhhhccCCCHHHHHHHHHHHHHHhCCchhHHHHHHcChHH
Q 007520 401 QNTTILRVASGAIANLAMN-EMNQGLIMSR-G---GGQLLAKTASKTDDPQTLRMVAGALANLCGNEKLHTMLEEDGAIK 475 (600)
Q Consensus 401 ~~~~v~~~Al~aL~NLa~~-~~~r~~I~~~-G---~I~~Lv~lL~~~~~~~v~~~Aa~aL~nLa~~~e~r~~i~~~G~i~ 475 (600)
.|++++..|+.++-|+... |+++..++.. | +-+.. .+...+..........-.|+ .+....||.
T Consensus 674 ~Dpei~~~AL~vIincVc~pp~~r~s~i~~v~S~~g~~r~--~l~~~~ks~~le~~l~~mw~---------~Vr~ndGIk 742 (1516)
T KOG1832|consen 674 VDPEIIQPALNVIINCVCPPPTTRPSTIVAVGSQSGDRRI--FLGAGTKSAKLEQVLRQMWE---------AVRGNDGIK 742 (1516)
T ss_pred cCHHHHHHHHhhhheeecCCCCcchhhhhhccccCCCccc--cccCCCchHHHHHHHHHHHH---------HHhcCccHH
Confidence 3789999999999999888 5777665542 1 11111 11122223344555554454 445568999
Q ss_pred HHHHHHcCCC-----HHHHHHHHHHHHHhhcCCchhhhhcchhhHHHHHh-----CCcHHHHHH
Q 007520 476 ALLAMVRSGN-----IDVIAQVARGLANFAKCESRAIVQGQRKGRSHLME-----DSALEWLIA 529 (600)
Q Consensus 476 ~Lv~lL~s~~-----~~v~~~A~~aL~nLa~~~~~~~~q~~~~~r~~l~e-----~g~l~~Lv~ 529 (600)
.|+.+|.... ..++.-||.+|..|+.++ ..|+++.. ..+++.|.+
T Consensus 743 iLl~Ll~~k~P~t~aD~IRalAc~~L~GLaR~~---------tVrQIltKLpLvt~~~~q~lm~ 797 (1516)
T KOG1832|consen 743 ILLKLLQYKNPPTTADCIRALACRVLLGLARDD---------TVRQILTKLPLVTNERAQILMA 797 (1516)
T ss_pred HHHHHHhccCCCCcHHHHHHHHHHHHhccccCc---------HHHHHHHhCccccchHHHHHhh
Confidence 9999997433 357888999999999663 45555544 344555544
No 305
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=84.97 E-value=41 Score=33.01 Aligned_cols=84 Identities=21% Similarity=0.172 Sum_probs=35.1
Q ss_pred HHHHhHHHHHHHhhhHHHHHHHHHhhhhhhhhhhhhHH-------HHHHHHHHhhhhhhhhhhhhhHHhhhhhhhhhhhH
Q 007520 107 NLVTRSEFLEKENAHLELEVEKILGELNHQKDQNNLKR-------EKIVQLEISLKNSKQYEMENSTYQKALADTTQLYE 179 (600)
Q Consensus 107 ~l~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~ 179 (600)
.+..+++.+.+||+-|..==.+-.+.|+.--+..+.+. ..+..|-..|+.++....+.+.-.+...+......
T Consensus 23 elq~~l~~l~~ENk~Lk~lq~Rq~kAL~k~e~~e~~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~~~klk~~~~el~k~~ 102 (194)
T PF15619_consen 23 ELQRKLQELRKENKTLKQLQKRQEKALQKYEDTEAELPQLLQRHNEEVRVLRERLRKSQEQERELERKLKDKDEELLKTK 102 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555554444444444433333333332 22233333334444333333333333444444444
Q ss_pred HHHHHHHHHhH
Q 007520 180 KKIAELNKKLE 190 (600)
Q Consensus 180 ~~~~~l~~~l~ 190 (600)
.++..|.++.+
T Consensus 103 ~~l~~L~~L~~ 113 (194)
T PF15619_consen 103 DELKHLKKLSE 113 (194)
T ss_pred HHHHHHHHHHH
Confidence 44444444433
No 306
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=84.95 E-value=31 Score=35.42 Aligned_cols=82 Identities=17% Similarity=0.136 Sum_probs=48.7
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchhhhhcchhhHHHHHhCCcHHHHHHhhcC--CCHHHHHHHHHHHHHhhc
Q 007520 474 IKALLAMVRSGNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSKT--NSASTRRHVELALCHLAQ 551 (600)
Q Consensus 474 i~~Lv~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~q~~~~~r~~l~e~g~l~~Lv~Ll~s--~~~~v~~~Aa~aL~nLa~ 551 (600)
|.+++.-+..++.-.+..++.+|+.|-. .-.||.|...|.. .++.||+.|+.||..++.
T Consensus 189 I~al~~~l~~~SalfrhEvAfVfGQl~s-------------------~~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~ 249 (289)
T KOG0567|consen 189 INALIDGLADDSALFRHEVAFVFGQLQS-------------------PAAIPSLIKVLLDETEHPMVRHEAAEALGAIAD 249 (289)
T ss_pred HHHHHHhcccchHHHHHHHHHHHhhccc-------------------hhhhHHHHHHHHhhhcchHHHHHHHHHHHhhcC
Confidence 3334444445555556666666666532 2367888886654 578899999999998865
Q ss_pred CchhHHHHHHcccHHHHHHhhhcCChHHHHHHHH
Q 007520 552 NEDNARDFISRGGAKELVQISIESSREDIRNLAK 585 (600)
Q Consensus 552 ~~~~~~~lv~~G~l~~Lv~ll~~~~~~~ir~~A~ 585 (600)
.. +++.|.+.+.+.+ +-+++-+.
T Consensus 250 e~----------~~~vL~e~~~D~~-~vv~esc~ 272 (289)
T KOG0567|consen 250 ED----------CVEVLKEYLGDEE-RVVRESCE 272 (289)
T ss_pred HH----------HHHHHHHHcCCcH-HHHHHHHH
Confidence 33 3455555555433 23444333
No 307
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.79 E-value=39 Score=39.40 Aligned_cols=60 Identities=15% Similarity=0.113 Sum_probs=29.9
Q ss_pred CCCHHHHHHHHHHHHHhhcC-CccHHHHHHh---------------CchhhhHhhhccCCCHHHHHHHHHHHHHHhC
Q 007520 400 SQNTTILRVASGAIANLAMN-EMNQGLIMSR---------------GGGQLLAKTASKTDDPQTLRMVAGALANLCG 460 (600)
Q Consensus 400 ~~~~~v~~~Al~aL~NLa~~-~~~r~~I~~~---------------G~I~~Lv~lL~~~~~~~v~~~Aa~aL~nLa~ 460 (600)
+.++.....|+.++..|... ++|...++-. |.+-.++.+| ++++-+++..+......|+.
T Consensus 271 S~~p~alk~Aa~~~i~l~~kesdnnvklIvldrl~~l~~~~~~il~~l~mDvLrvL-ss~dldvr~Ktldi~ldLvs 346 (948)
T KOG1058|consen 271 SNDPTALKAAASTYIDLLVKESDNNVKLIVLDRLSELKALHEKILQGLIMDVLRVL-SSPDLDVRSKTLDIALDLVS 346 (948)
T ss_pred cCCHHHHHHHHHHHHHHHHhccCcchhhhhHHHHHHHhhhhHHHHHHHHHHHHHHc-CcccccHHHHHHHHHHhhhh
Confidence 34555556666666666544 3332222111 1222334455 34666777777776665543
No 308
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=84.58 E-value=9.9 Score=40.18 Aligned_cols=27 Identities=33% Similarity=0.434 Sum_probs=10.0
Q ss_pred HHHHHHHHhHHHHHHHhhhHHHHHHHH
Q 007520 103 ESMRNLVTRSEFLEKENAHLELEVEKI 129 (600)
Q Consensus 103 ~~~~~l~~~~~~~~~e~~~~~~~~~~~ 129 (600)
+.+..+..+++.|++|...+..|++.|
T Consensus 43 ~~~~~~~~el~~le~Ee~~l~~eL~~L 69 (314)
T PF04111_consen 43 EDIEELEEELEKLEQEEEELLQELEEL 69 (314)
T ss_dssp H--HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444333
No 309
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=84.40 E-value=9.1 Score=30.30 Aligned_cols=52 Identities=19% Similarity=0.319 Sum_probs=40.1
Q ss_pred HHHHHHHhhhchhHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHhhhHHHHHHHHHhhhh
Q 007520 75 KIEMQQKLRENDKYEFEKQLRESQISYDESMRNLVTRSEFLEKENAHLELEVEKILGELN 134 (600)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~e~~~~~~~~~~~~~~~~ 134 (600)
.|+.+|.-. ..+..||.+++..| .+.+.++..-++.|+.|..+|+.|..++.
T Consensus 5 aL~~Eirak----Q~~~eEL~kvk~~n----~~~e~kLqeaE~rn~eL~~ei~~L~~e~e 56 (61)
T PF08826_consen 5 ALEAEIRAK----QAIQEELTKVKSAN----LAFESKLQEAEKRNRELEQEIERLKKEME 56 (61)
T ss_dssp HHHHHHHHH----HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH----HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555444 77888888776554 57888888899999999999999988864
No 310
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=84.36 E-value=50 Score=33.47 Aligned_cols=52 Identities=29% Similarity=0.265 Sum_probs=31.1
Q ss_pred HHHHHHHHhHHHHHHHhhhHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHhhhhh
Q 007520 103 ESMRNLVTRSEFLEKENAHLELEVEKILGELNHQKDQNNLKREKIVQLEISLKNS 157 (600)
Q Consensus 103 ~~~~~l~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (600)
-++.+++++..-|+.+|.+|.-|..+++.....|... .-+.+.+||-.|-++
T Consensus 52 sqL~q~etrnrdl~t~nqrl~~E~e~~Kek~e~q~~q---~y~q~s~Leddlsqt 103 (333)
T KOG1853|consen 52 SQLDQLETRNRDLETRNQRLTTEQERNKEKQEDQRVQ---FYQQESQLEDDLSQT 103 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 4555777777777777777777777766655544432 233444444444333
No 311
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.05 E-value=24 Score=41.14 Aligned_cols=54 Identities=22% Similarity=0.166 Sum_probs=39.1
Q ss_pred CCHHHHHHHHHHHHHhhcCCchhhhhcchhhHHHHHhCCcHHHHHHhhcCCCHHHHHHHHHHHHHhh
Q 007520 484 GNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSKTNSASTRRHVELALCHLA 550 (600)
Q Consensus 484 ~~~~v~~~A~~aL~nLa~~~~~~~~q~~~~~r~~l~e~g~l~~Lv~Ll~s~~~~v~~~Aa~aL~nLa 550 (600)
.+.-++..|+.+|+++...++. ....+.-.|.+.+.+.|..++.+|..+|.++-
T Consensus 478 En~ivRaaAv~alaKfg~~~~~-------------l~~sI~vllkRc~~D~DdevRdrAtf~l~~l~ 531 (865)
T KOG1078|consen 478 ENAIVRAAAVSALAKFGAQDVV-------------LLPSILVLLKRCLNDSDDEVRDRATFYLKNLE 531 (865)
T ss_pred hhhhhHHHHHHHHHHHhcCCCC-------------ccccHHHHHHHHhcCchHHHHHHHHHHHHHhh
Confidence 4566788888888888754321 11234445556788899999999999999986
No 312
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=84.03 E-value=61 Score=34.27 Aligned_cols=91 Identities=21% Similarity=0.246 Sum_probs=53.9
Q ss_pred hHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHhhhHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHhhhhhhhhhhhhhH
Q 007520 87 KYEFEKQLRESQISYDESMRNLVTRSEFLEKENAHLELEVEKILGELNHQKDQNNLKREKIVQLEISLKNSKQYEMENST 166 (600)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~ 166 (600)
-++||||+. +|..++||-.-|.+..+-+.+.|.-.|+..|.--..++-..+ ..
T Consensus 141 t~~LEKERe-----------qL~QQiEFe~~e~kK~E~~k~Kl~~qLeeEk~RHeqis~mLi----------------lE 193 (561)
T KOG1103|consen 141 TAHLEKERE-----------QLQQQIEFEIEEKKKAEIAKDKLEMQLEEEKKRHEQISLMLI----------------LE 193 (561)
T ss_pred HHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HH
Confidence 368999998 888889888888888887777776666544432222222222 12
Q ss_pred HhhhhhhhhhhhHHHHHHHHHHhHhHHHhhhhhHHHHHH
Q 007520 167 YQKALADTTQLYEKKIAELNKKLEDEHACFEGAVEQLDM 205 (600)
Q Consensus 167 ~~~~l~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~~~ 205 (600)
+.+++...... .-+-.++.-+++++..|..-+++++-.
T Consensus 194 cKka~~KaaEe-gqKA~ei~Lklekdksr~~k~eee~aa 231 (561)
T KOG1103|consen 194 CKKALLKAAEE-GQKAEEIMLKLEKDKSRTKKGEEEAAA 231 (561)
T ss_pred HHHHHHHHHHh-hhhHHHHHHhhccCccccCCChHHHHH
Confidence 23333322211 123345666777777777777766654
No 313
>PF08702 Fib_alpha: Fibrinogen alpha/beta chain family; InterPro: IPR012290 Fibrinogen plays key roles in both blood clotting and platelet aggregation. During blood clot formation, the conversion of soluble fibrinogen to insoluble fibrin is triggered by thrombin, resulting in the polymerisation of fibrin, which forms a soft clot; this is then converted to a hard clot by factor XIIIA, which cross-links fibrin molecules. Platelet aggregation involves the binding of the platelet protein receptor integrin alpha(IIb)-beta(3) to the C-terminal D domain of fibrinogen []. In addition to platelet aggregation, platelet-fibrinogen interaction mediates both adhesion and fibrin clot retraction. Fibrinogen occurs as a dimer, where each monomer is composed of three non-identical chains, alpha, beta and gamma, linked together by several disulphide bonds []. The N-terminals of all six chains come together to form the centre of the molecule (E domain), from which the monomers extend in opposite directions as coiled coils, followed by C-terminal globular domains (D domains). Therefore, the domain composition is: D-coil-E-coil-D. At each end, the C-terminal of the alpha chain extends beyond the D domain as a protuberance that is important for cross-linking the molecule. During clot formation, the N-terminal fragments of the alpha and beta chains (within the E domain) in fibrinogen are cleaved by thrombin, releasing fibrinopeptides A and B, respectively, and producing fibrin. This cleavage results in the exposure of four binding sites on the E domain, each of which can bind to a D domain from different fibrin molecules. The binding of fibrin molecules produces a polymer consisting of a lattice network of fibrins that form a long, branching, flexible fibre [, ]. Fibrin fibres interact with platelets to increase the size of the clot, as well as with several different proteins and cells, thereby promoting the inflammatory response and concentrating the cells required for wound repair at the site of damage. This entry represents the coiled-coil domain and part of the N-terminal E domain found in all three fibrinogen polypeptides, namely the alpha, beta and gamma chains. More information about these proteins can be found at Protein of the Month: Fibrinogen [].; GO: 0005102 receptor binding, 0030674 protein binding, bridging, 0007165 signal transduction, 0030168 platelet activation, 0051258 protein polymerization, 0005577 fibrinogen complex; PDB: 1LWU_D 1N73_D 1M1J_B 1JY2_R 1JY3_R 1RF0_A 2H43_D 1RE4_D 2XNY_D 2HPC_D ....
Probab=83.87 E-value=38 Score=31.70 Aligned_cols=102 Identities=19% Similarity=0.238 Sum_probs=70.6
Q ss_pred HHHHHhhhccHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHh---hhchhHHHHHHHHHHH-hhhHHHHHHHH
Q 007520 34 ERKQKLRENDKCELEKLLRECQISYDEAKDNLVTQVELLTAKIEMQQKL---RENDKYEFEKQLRESQ-ISYDESMRNLV 109 (600)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~-~~~~~~~~~l~ 109 (600)
-+|++.+.++-.+|+..+.+.+++-+++.. | |-.++..+..-++. ..+--.++.+++++.. .-|.--+.+-+
T Consensus 28 ~k~~~~v~~~i~~L~~~L~~~~n~t~~~~~-~---v~~i~~~~~~~q~~~~~n~~i~~~~s~~l~~~~~~~~e~~i~~~~ 103 (146)
T PF08702_consen 28 DKYERDVDKDIQELENLLDQISNSTSEAFE-Y---VKNIKDSLRPRQKQAKPNDNIYNQYSKSLRKMIIYILETKIINQP 103 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHccchHHHHHHHHHHHHHHHHhhhhHHH-H---HHHHHHHHhccccccCCcccHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 356666666668888899999999888887 2 33444444443332 2234456777777777 66666777777
Q ss_pred HhHHHHHHHhhhHHHHHHHHHhhhhhhhhh
Q 007520 110 TRSEFLEKENAHLELEVEKILGELNHQKDQ 139 (600)
Q Consensus 110 ~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~ 139 (600)
..+.+|+.=.+....+|.+|+..+-++-..
T Consensus 104 ~~I~~Lq~~~~~~~~ki~~Le~~i~~~~~~ 133 (146)
T PF08702_consen 104 SNIRVLQNILRSNRQKIQRLEQDIDQQERY 133 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777788888888888888888877655443
No 314
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.80 E-value=11 Score=41.67 Aligned_cols=146 Identities=15% Similarity=0.080 Sum_probs=86.3
Q ss_pred HcCCHHHHHHHHc---cCCCHHHHHHHHHHHHHhhcC-CccHHHHHHhCchhhhHhhhccCCCHHHHHHHHHHHHHHhC-
Q 007520 386 EEGGLDALLLLLR---TSQNTTILRVASGAIANLAMN-EMNQGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLCG- 460 (600)
Q Consensus 386 ~~G~I~~Lv~lL~---~~~~~~v~~~Al~aL~NLa~~-~~~r~~I~~~G~I~~Lv~lL~~~~~~~v~~~Aa~aL~nLa~- 460 (600)
+.|.+..++..+. .+++..++..|+..|.|.+.. |+-....... .+..++.-|.+..+.+|...+..+|.-+..
T Consensus 252 ~~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~-~ldaii~gL~D~~~~~V~leam~~Lt~v~~~ 330 (533)
T KOG2032|consen 252 KTGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTT-QLDAIIRGLYDDLNEEVQLEAMKCLTMVLEK 330 (533)
T ss_pred ccccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHH-HHHHHHHHHhcCCccHHHHHHHHHHHHHHHh
Confidence 3455555444442 356778899999999999988 5544444443 344444444455566788888877776653
Q ss_pred --CchhHHHHHHcChHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchhhhhcchhhHHHHHh--CCcHHHHHHhhcCCCH
Q 007520 461 --NEKLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLME--DSALEWLIANSKTNSA 536 (600)
Q Consensus 461 --~~e~r~~i~~~G~i~~Lv~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~q~~~~~r~~l~e--~g~l~~Lv~Ll~s~~~ 536 (600)
+.+....++. +...+..+..+.++.++..|..++..|+.... ...+..+.+ .+...+++-.+.+.++
T Consensus 331 ~~~~~l~~~~l~--ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g-------~~~e~~Fte~v~k~~~~lllhl~d~~p 401 (533)
T KOG2032|consen 331 ASNDDLESYLLN--IALRLRTLFDSEDDKMRAAAFVLFGALAKLAG-------GGWEEFFTEQVKKRLAPLLLHLQDPNP 401 (533)
T ss_pred hhhcchhhhchh--HHHHHHHHHHhcChhhhhhHHHHHHHHHHHcC-------CCchhhhHHHHHhccccceeeeCCCCh
Confidence 3333332222 22345666789999999998887777765421 345555654 2233344445565665
Q ss_pred HHHHH
Q 007520 537 STRRH 541 (600)
Q Consensus 537 ~v~~~ 541 (600)
.+-.+
T Consensus 402 ~va~A 406 (533)
T KOG2032|consen 402 YVARA 406 (533)
T ss_pred HHHHH
Confidence 54433
No 315
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=83.51 E-value=75 Score=34.85 Aligned_cols=50 Identities=26% Similarity=0.207 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHh
Q 007520 49 KLLRECQISYDEAKDNLVTQVELLTAKIEMQQKLRENDKYEFEKQLRESQI 99 (600)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (600)
+++...+..|.+.++.+. +...-..+++.+++..+.+...++.++.....
T Consensus 38 ~~l~q~q~ei~~~~~~i~-~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~ 87 (420)
T COG4942 38 KQLKQIQKEIAALEKKIR-EQQDQRAKLEKQLKSLETEIASLEAQLIETAD 87 (420)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333344444444444333 34444445555555555555555555554433
No 316
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=83.09 E-value=58 Score=33.30 Aligned_cols=68 Identities=21% Similarity=0.239 Sum_probs=52.8
Q ss_pred HhhhhhHHHHHHHHHHHhhhhhc-ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 007520 194 ACFEGAVEQLDMVKKLLSDYQNS-NQGQKEVHELCVKLKETRQLHESAVYEVQTLKSEYKNLLEEKETM 261 (600)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~q~~-~~~~~e~~~l~~~~~d~~~~~e~~~~el~~l~~~~~~l~~~~~~~ 261 (600)
..+..|+.++...+.|++.+++. .+.+.+...+.+.+.+....|.+.-.|++++-....+-.++..++
T Consensus 146 ~~~~~Ae~El~~A~~LL~~v~~~~~~~~~~~~~l~~~i~~~L~~~~~kL~Dl~~~l~eA~~~~~ea~~l 214 (264)
T PF06008_consen 146 PQRQNAEDELKEAEDLLSRVQKWFQKPQQENESLAEAIRDDLNDYNAKLQDLRDLLNEAQNKTREAEDL 214 (264)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45577899999999999999997 577778999999999999999988888777775544334444444
No 317
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=82.75 E-value=64 Score=35.33 Aligned_cols=188 Identities=18% Similarity=0.124 Sum_probs=108.9
Q ss_pred CHHHHHHHHccCCCHHHHHHHHHHHHHhhcC-CccHHHHHHhCchhhhHhhhccC----CCHHHHHHHHHHHHHHh--CC
Q 007520 389 GLDALLLLLRTSQNTTILRVASGAIANLAMN-EMNQGLIMSRGGGQLLAKTASKT----DDPQTLRMVAGALANLC--GN 461 (600)
Q Consensus 389 ~I~~Lv~lL~~~~~~~v~~~Al~aL~NLa~~-~~~r~~I~~~G~I~~Lv~lL~~~----~~~~v~~~Aa~aL~nLa--~~ 461 (600)
.+..++.+.....++..+..++.+|+.|.-- +... ..+ +.+..+...+... ..+......+|+..-|. ++
T Consensus 190 ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~--~l~-~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~ 266 (415)
T PF12460_consen 190 LLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDD--DLD-EFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGH 266 (415)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChh--hHH-HHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCC
Confidence 4666777766566677788888888877644 1111 111 1222222222111 22233444445444443 22
Q ss_pred chhHHHHHHcChHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchhhhhc-chhh----HHHHHhCCcHHHHHHhhcCCCH
Q 007520 462 EKLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFAKCESRAIVQG-QRKG----RSHLMEDSALEWLIANSKTNSA 536 (600)
Q Consensus 462 ~e~r~~i~~~G~i~~Lv~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~q~-~~~~----r~~l~e~g~l~~Lv~Ll~s~~~ 536 (600)
+... ..+..|+.++.+ +.+...|+.++.-|..+.+...... |... |+.+- .-.+|.|+...+..+.
T Consensus 267 ~~~~------~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F-~~~~p~L~~~~~~~~~ 337 (415)
T PF12460_consen 267 PLAT------ELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFF-TQVLPKLLEGFKEADD 337 (415)
T ss_pred chHH------HHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHH-HHHHHHHHHHHhhcCh
Confidence 2221 245667777766 6778889999999987644443221 2222 22222 2467888888887777
Q ss_pred HHHHHHHHHHHHhhcCchhHHHHHH-cccHHHHHHhhhcCChHHHHHHHHHHHh
Q 007520 537 STRRHVELALCHLAQNEDNARDFIS-RGGAKELVQISIESSREDIRNLAKKTMK 589 (600)
Q Consensus 537 ~v~~~Aa~aL~nLa~~~~~~~~lv~-~G~l~~Lv~ll~~~~~~~ir~~A~~~L~ 589 (600)
..+.+-..||.++..+-+..-.+-+ ...+|.|++.+..++ ..++..+..+|.
T Consensus 338 ~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~-~~v~~s~L~tL~ 390 (415)
T PF12460_consen 338 EIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPD-ADVLLSSLETLK 390 (415)
T ss_pred hhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHH
Confidence 7999999999999776553222222 347888888886655 456666665553
No 318
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=82.53 E-value=13 Score=42.85 Aligned_cols=137 Identities=18% Similarity=0.089 Sum_probs=94.9
Q ss_pred CHHHHHHHHccCCCHHHHHHHHHHHHHhhcCCccHHHHHHhCchhhhHhhhccCCCHHHHHHHHHHHHHHhCCchhHHHH
Q 007520 389 GLDALLLLLRTSQNTTILRVASGAIANLAMNEMNQGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLCGNEKLHTML 468 (600)
Q Consensus 389 ~I~~Lv~lL~~~~~~~v~~~Al~aL~NLa~~~~~r~~I~~~G~I~~Lv~lL~~~~~~~v~~~Aa~aL~nLa~~~e~r~~i 468 (600)
++|.|...+. +.+..++..++..+-..+..-+ -..+..-.+|.|..+...+.+..++..++.|+.-++ +..+..
T Consensus 390 IlplL~~S~~-~~~~~iQ~~~L~~lptv~e~iD--~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~---q~lD~~ 463 (700)
T KOG2137|consen 390 ILPLLYRSLE-DSDVQIQELALQILPTVAESID--VPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLI---QRLDKA 463 (700)
T ss_pred HHHHHHHHhc-CcchhhHHHHHHhhhHHHHhcc--HHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHH---HHHHHH
Confidence 6676777776 6688899999999988887644 455666678888888777777788889999998887 222222
Q ss_pred HHcChHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchhhhhcchhhHHHHHhCCcHHHHHHhhcCCCHHHHH
Q 007520 469 EEDGAIKALLAMVRSGNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSKTNSASTRR 540 (600)
Q Consensus 469 ~~~G~i~~Lv~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~q~~~~~r~~l~e~g~l~~Lv~Ll~s~~~~v~~ 540 (600)
.-..-+.++....+..++.+.....++..++..... .+ ..+..+.++|.++.+...+.-.+.+
T Consensus 464 ~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~--------~g-~ev~~~~VlPlli~ls~~~~L~~~Q 526 (700)
T KOG2137|consen 464 AVLDELLPILKCIKTRDPAIVMGFLRIYEALALIIY--------SG-VEVMAENVLPLLIPLSVAPSLNGEQ 526 (700)
T ss_pred HhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcc--------cc-eeeehhhhhhhhhhhhhcccccHHH
Confidence 222333444445568899999999999998876532 22 2344567889888887766533333
No 319
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=82.47 E-value=8.7 Score=37.54 Aligned_cols=34 Identities=24% Similarity=0.384 Sum_probs=0.0
Q ss_pred HHHhhhHHHHHHHHHhHHHHHHHhhhHHHHHHHH
Q 007520 96 ESQISYDESMRNLVTRSEFLEKENAHLELEVEKI 129 (600)
Q Consensus 96 ~~~~~~~~~~~~l~~~~~~~~~e~~~~~~~~~~~ 129 (600)
++-.+|...|.+|-.+...|+.++..|..+....
T Consensus 17 ~~~~~li~ay~~L~d~~~~l~~~~~~l~~~~~~~ 50 (194)
T PF08614_consen 17 KAFAELIDAYNRLADRTSLLKAENEQLQPEAESL 50 (194)
T ss_dssp ----------------------------------
T ss_pred cccccccccccccccccccccccccccccccccc
Confidence 4556788888999999999999999988865553
No 320
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=82.44 E-value=59 Score=32.93 Aligned_cols=39 Identities=18% Similarity=0.151 Sum_probs=28.1
Q ss_pred hHHHHHHHHHHhHhHHHhhhhhHHHHHH-HHHHHhhhhhc
Q 007520 178 YEKKIAELNKKLEDEHACFEGAVEQLDM-VKKLLSDYQNS 216 (600)
Q Consensus 178 ~~~~~~~l~~~l~~e~~~~~~~~~~~~~-~~~~~~~~q~~ 216 (600)
.-++++.|++-|..|..-|+++.+.+.. |.+..+.+|..
T Consensus 202 v~~Ei~~lk~~l~~e~~~R~~~Dd~Iv~aln~yt~~lQ~~ 241 (247)
T PF06705_consen 202 VLEEIAALKNALALESQEREQSDDDIVQALNHYTKALQDG 241 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 4567888888888888888888877766 55555555543
No 321
>PRK11281 hypothetical protein; Provisional
Probab=82.39 E-value=1.4e+02 Score=37.17 Aligned_cols=38 Identities=16% Similarity=0.213 Sum_probs=27.4
Q ss_pred HHHHhHHHHHHHhhhHHHHHHHHHhhhhhhhhhhhhHH
Q 007520 107 NLVTRSEFLEKENAHLELEVEKILGELNHQKDQNNLKR 144 (600)
Q Consensus 107 ~l~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (600)
=+..|.+.+.++-.+++.+++.|...+|+++....+..
T Consensus 224 l~~~q~d~~~~~~~~~~~~~~~lq~~in~kr~~~se~~ 261 (1113)
T PRK11281 224 LLQKQRDYLTARIQRLEHQLQLLQEAINSKRLTLSEKT 261 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566777888888888888888888776666553
No 322
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=82.30 E-value=95 Score=35.18 Aligned_cols=20 Identities=25% Similarity=0.147 Sum_probs=11.0
Q ss_pred HHHHHHhhhHHHHHHHHHhh
Q 007520 113 EFLEKENAHLELEVEKILGE 132 (600)
Q Consensus 113 ~~~~~e~~~~~~~~~~~~~~ 132 (600)
+.+++--.+|-.-+++|...
T Consensus 374 ~~le~~~~~~~~l~~~i~l~ 393 (581)
T KOG0995|consen 374 KELEKKFIDLNSLIRRIKLG 393 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444445666666666555
No 323
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=82.01 E-value=43 Score=39.99 Aligned_cols=180 Identities=12% Similarity=0.065 Sum_probs=111.0
Q ss_pred HhhCCCCHHHHHHHHHHHHHhhCCcchHHHHH-HcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcC-CccHHHHHHhCc
Q 007520 354 QLLTSEDPDVQIHAVKVVANLAAEDINQEKIV-EEGGLDALLLLLRTSQNTTILRVASGAIANLAMN-EMNQGLIMSRGG 431 (600)
Q Consensus 354 ~LL~s~~~~vr~~Aa~aL~nLa~~~~~~~~iv-~~G~I~~Lv~lL~~~~~~~v~~~Al~aL~NLa~~-~~~r~~I~~~G~ 431 (600)
.-+.+.+..-|..|+..+.....++. ..... ..|.+-.++.+...+.+..+...++.+|..|+.. ........ .+.
T Consensus 260 t~~~s~~WK~R~Eale~l~~~l~e~~-~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~-~~v 337 (815)
T KOG1820|consen 260 TEMLSKKWKDRKEALEELVAILEEAK-KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKYA-KNV 337 (815)
T ss_pred HhhhccchHHHHHHHHHHHHHHhccc-cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHHH-Hhh
Confidence 33456777788888888877666544 11111 2223444555555567778888899999988865 33322222 346
Q ss_pred hhhhHhhhccCCCHHHHHHHHHHHHHHhCCchhHHHHHHcChHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchhhhhcc
Q 007520 432 GQLLAKTASKTDDPQTLRMVAGALANLCGNEKLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFAKCESRAIVQGQ 511 (600)
Q Consensus 432 I~~Lv~lL~~~~~~~v~~~Aa~aL~nLa~~~e~r~~i~~~G~i~~Lv~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~q~~ 511 (600)
+|.|+.-+.. ..+.++..+..++-..+... .-....+.+..++.+++|.++..+...+...........
T Consensus 338 ~p~lld~lke-kk~~l~d~l~~~~d~~~ns~------~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~---- 406 (815)
T KOG1820|consen 338 FPSLLDRLKE-KKSELRDALLKALDAILNST------PLSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKT---- 406 (815)
T ss_pred cchHHHHhhh-ccHHHHHHHHHHHHHHHhcc------cHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcC----
Confidence 7888887754 34444444444444333211 112345677788899999999887777766653321100
Q ss_pred hhhHHHHHhCCcHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 007520 512 RKGRSHLMEDSALEWLIANSKTNSASTRRHVELALCHL 549 (600)
Q Consensus 512 ~~~r~~l~e~g~l~~Lv~Ll~s~~~~v~~~Aa~aL~nL 549 (600)
..+. .-.+++|.++...++.+.+||..|..++.-+
T Consensus 407 -~~~~--t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v 441 (815)
T KOG1820|consen 407 -VEKE--TVKTLVPHLIKHINDTDKDVRKAALEAVAAV 441 (815)
T ss_pred -cchh--hHHHHhHHHhhhccCCcHHHHHHHHHHHHHH
Confidence 1111 1256889999999999999999999988776
No 324
>PRK11281 hypothetical protein; Provisional
Probab=81.95 E-value=1.4e+02 Score=37.04 Aligned_cols=88 Identities=16% Similarity=0.195 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH--hhhchhHHHHHHHH----------HHHhhhHHHHHHHHHhH
Q 007520 45 CELEKLLRECQISYDEAKDNLVTQVELLTAKIEMQQK--LRENDKYEFEKQLR----------ESQISYDESMRNLVTRS 112 (600)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~----------~~~~~~~~~~~~l~~~~ 112 (600)
+++.+++.+|...+.++.+ +++.+|........ ....+...||..+. +....|...+..+.++.
T Consensus 83 ~~L~k~l~~Ap~~l~~a~~----~Le~Lk~~~~~~~~~~~~~~Sl~qLEq~L~q~~~~Lq~~Q~~La~~NsqLi~~qT~P 158 (1113)
T PRK11281 83 EQLKQQLAQAPAKLRQAQA----ELEALKDDNDEETRETLSTLSLRQLESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQP 158 (1113)
T ss_pred HHHHHHHHHhHHHHHHHHH----HHHHhhccccccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcch
Confidence 5677777777777777777 44455532222110 01111122333222 22336667777777777
Q ss_pred HHHHHHhhhHHHHHHHHHhhhhhh
Q 007520 113 EFLEKENAHLELEVEKILGELNHQ 136 (600)
Q Consensus 113 ~~~~~e~~~~~~~~~~~~~~~~~~ 136 (600)
|.-+...+.-...+..+.+.++.-
T Consensus 159 ERAQ~~lsea~~RlqeI~~~L~~~ 182 (1113)
T PRK11281 159 ERAQAALYANSQRLQQIRNLLKGG 182 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCC
Confidence 776666666666666666666543
No 325
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=81.94 E-value=80 Score=34.08 Aligned_cols=75 Identities=19% Similarity=0.145 Sum_probs=37.6
Q ss_pred hhhhhHHHHHHHHHHhHhHHHhhhhhHHHHHHHHHHHhh----hhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007520 174 TTQLYEKKIAELNKKLEDEHACFEGAVEQLDMVKKLLSD----YQNSNQGQKEVHELCVKLKETRQLHESAVYEVQTLK 248 (600)
Q Consensus 174 ~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~~~~~~~~~~----~q~~~~~~~e~~~l~~~~~d~~~~~e~~~~el~~l~ 248 (600)
....+..++..++..++.-.+....++..++..++|+.. -+.+.....++.+++..+.++.+....+..++..+.
T Consensus 152 ~i~~~~~~i~~~~~~l~~~~~~l~~~~~~~~~~~~L~~~g~is~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~ 230 (423)
T TIGR01843 152 QIKQLEAELAGLQAQLQALRQQLEVISEELEARRKLKEKGLVSRLELLELERERAEAQGELGRLEAELEVLKRQIDELQ 230 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555555555556555555542 223333334445555555555555555444433333
No 326
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=81.91 E-value=4.5 Score=45.30 Aligned_cols=96 Identities=19% Similarity=0.158 Sum_probs=60.1
Q ss_pred chhhhHhhhccCCCHHHHHHHHHHHHHHhCCchhHHHHHHcChHHHHHHHH-cCCCHHHHHHHHHHHHHhhcCCchhhhh
Q 007520 431 GGQLLAKTASKTDDPQTLRMVAGALANLCGNEKLHTMLEEDGAIKALLAMV-RSGNIDVIAQVARGLANFAKCESRAIVQ 509 (600)
Q Consensus 431 ~I~~Lv~lL~~~~~~~v~~~Aa~aL~nLa~~~e~r~~i~~~G~i~~Lv~lL-~s~~~~v~~~A~~aL~nLa~~~~~~~~q 509 (600)
++..|+...-+..+.+|+++|+.+|..+|.++. ..++..+.+| .+.++-||..++-+|+-.|....
T Consensus 552 vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~--------~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G----- 618 (926)
T COG5116 552 VVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDR--------DLLVGTVELLSESHNFHVRAGVAVALGIACAGTG----- 618 (926)
T ss_pred hHhhhheeecccCchHHHHHHHHheeeeEecCc--------chhhHHHHHhhhccchhhhhhhHHHhhhhhcCCc-----
Confidence 444444442223444777777777777765432 2445556665 46777788777777777765431
Q ss_pred cchhhHHHHHhCCcHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 007520 510 GQRKGRSHLMEDSALEWLIANSKTNSASTRRHVELALCHL 549 (600)
Q Consensus 510 ~~~~~r~~l~e~g~l~~Lv~Ll~s~~~~v~~~Aa~aL~nL 549 (600)
+.-++..|-+++.+....||..|+.++..+
T Consensus 619 ----------~~~a~diL~~L~~D~~dfVRQ~AmIa~~mI 648 (926)
T COG5116 619 ----------DKVATDILEALMYDTNDFVRQSAMIAVGMI 648 (926)
T ss_pred ----------cHHHHHHHHHHhhCcHHHHHHHHHHHHHHH
Confidence 122556666677777888888888887766
No 327
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=81.81 E-value=22 Score=40.97 Aligned_cols=171 Identities=16% Similarity=0.137 Sum_probs=88.1
Q ss_pred HHHHHHHHccCCCHHHHHHHHHHHHHhhcC--CccHHHHHHhCchhhhHhhhcc---CCCHHHHHHHHHHHHHHh----C
Q 007520 390 LDALLLLLRTSQNTTILRVASGAIANLAMN--EMNQGLIMSRGGGQLLAKTASK---TDDPQTLRMVAGALANLC----G 460 (600)
Q Consensus 390 I~~Lv~lL~~~~~~~v~~~Al~aL~NLa~~--~~~r~~I~~~G~I~~Lv~lL~~---~~~~~v~~~Aa~aL~nLa----~ 460 (600)
+..+..++....-. -..|..+|..|... .+.... +..+..++.. ..++.+...|+.+++.|. .
T Consensus 397 v~~i~~~I~~~~~~--~~ea~~~l~~l~~~~~~Pt~e~------l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~ 468 (618)
T PF01347_consen 397 VKFIKDLIKSKKLT--DDEAAQLLASLPFHVRRPTEEL------LKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCV 468 (618)
T ss_dssp HHHHHHHHHTT-S---HHHHHHHHHHHHHT-----HHH------HHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCC--HHHHHHHHHHHHhhcCCCCHHH------HHHHHHHHhCccccCChhHHHHHHHHHHHHhCceee
Confidence 44455566532221 22355666666554 222222 2223333321 134556666666666664 3
Q ss_pred Cc------hhHHHHHHcChHHHHHHHHc----CCCHHHHHHHHHHHHHhhcCCchhhhhcchhhHHHHHhCCcHHHHHHh
Q 007520 461 NE------KLHTMLEEDGAIKALLAMVR----SGNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIAN 530 (600)
Q Consensus 461 ~~------e~r~~i~~~G~i~~Lv~lL~----s~~~~v~~~A~~aL~nLa~~~~~~~~q~~~~~r~~l~e~g~l~~Lv~L 530 (600)
.. ..+...+....++.+...+. .++...+..++.||+|+... ..++.|..+
T Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~~-------------------~~i~~l~~~ 529 (618)
T PF01347_consen 469 NSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGHP-------------------ESIPVLLPY 529 (618)
T ss_dssp T-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-G-------------------GGHHHHHTT
T ss_pred cccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCCc-------------------hhhHHHHhH
Confidence 31 11111122345555555553 56677788899999998622 377888887
Q ss_pred hcCC---CHHHHHHHHHHHHHhhcCchhHHHHHHcccHHHHHHhhhcCC-hHHHHHHHHHHH-hcCccc
Q 007520 531 SKTN---SASTRRHVELALCHLAQNEDNARDFISRGGAKELVQISIESS-REDIRNLAKKTM-KSNPRL 594 (600)
Q Consensus 531 l~s~---~~~v~~~Aa~aL~nLa~~~~~~~~lv~~G~l~~Lv~ll~~~~-~~~ir~~A~~~L-~~~p~~ 594 (600)
+... +..+|..|++||..++.... .. +.+.|..+..... ..++|-+|..+| ..+|+.
T Consensus 530 i~~~~~~~~~~R~~Ai~Alr~~~~~~~---~~----v~~~l~~I~~n~~e~~EvRiaA~~~lm~~~P~~ 591 (618)
T PF01347_consen 530 IEGKEEVPHFIRVAAIQALRRLAKHCP---EK----VREILLPIFMNTTEDPEVRIAAYLILMRCNPSP 591 (618)
T ss_dssp STTSS-S-HHHHHHHHHTTTTGGGT-H---HH----HHHHHHHHHH-TTS-HHHHHHHHHHHHHT---H
T ss_pred hhhccccchHHHHHHHHHHHHHhhcCc---HH----HHHHHHHHhcCCCCChhHHHHHHHHHHhcCCCH
Confidence 7766 68899999999998844322 11 3455666665543 456888888555 544765
No 328
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=81.52 E-value=14 Score=42.47 Aligned_cols=198 Identities=16% Similarity=0.122 Sum_probs=100.8
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHhhCC--cchHHHHHHcCCHHHHHHHHcc---CCCHHHHHHHHHHHHHhhcC---C
Q 007520 349 LPKILQLLTSEDPDVQIHAVKVVANLAAE--DINQEKIVEEGGLDALLLLLRT---SQNTTILRVASGAIANLAMN---E 420 (600)
Q Consensus 349 V~~Lv~LL~s~~~~vr~~Aa~aL~nLa~~--~~~~~~iv~~G~I~~Lv~lL~~---~~~~~v~~~Al~aL~NLa~~---~ 420 (600)
+..+..++.+...... .|+.+|..+... .+... .+..+..++.. ..++.+...|+.++..|... .
T Consensus 397 v~~i~~~I~~~~~~~~-ea~~~l~~l~~~~~~Pt~e------~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~ 469 (618)
T PF01347_consen 397 VKFIKDLIKSKKLTDD-EAAQLLASLPFHVRRPTEE------LLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVN 469 (618)
T ss_dssp HHHHHHHHHTT-S-HH-HHHHHHHHHHHT-----HH------HHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCCCHH-HHHHHHHHHHhhcCCCCHH------HHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeec
Confidence 5555666655433222 244555554432 22221 23333444431 23456777777777777543 1
Q ss_pred -------ccHHHHHHhCchhhhHhhhc---cCCCHHHHHHHHHHHHHHhCCchhHHHHHHcChHHHHHHHHcCC---CHH
Q 007520 421 -------MNQGLIMSRGGGQLLAKTAS---KTDDPQTLRMVAGALANLCGNEKLHTMLEEDGAIKALLAMVRSG---NID 487 (600)
Q Consensus 421 -------~~r~~I~~~G~I~~Lv~lL~---~~~~~~v~~~Aa~aL~nLa~~~e~r~~i~~~G~i~~Lv~lL~s~---~~~ 487 (600)
..+...+....++.|...|. ...+......++.+|+|+-.. ..++.|..++.+. +..
T Consensus 470 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~~----------~~i~~l~~~i~~~~~~~~~ 539 (618)
T PF01347_consen 470 SDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGHP----------ESIPVLLPYIEGKEEVPHF 539 (618)
T ss_dssp -----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-G----------GGHHHHHTTSTTSS-S-HH
T ss_pred ccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCCc----------hhhHHHHhHhhhccccchH
Confidence 11122222345666666664 234556677788899987542 3666777777544 678
Q ss_pred HHHHHHHHHHHhhcCCchhhhhcchhhHHHHHhCCcHHHHHHhhcC--CCHHHHHHHHHHHHHhhcCchhHHHHHHcccH
Q 007520 488 VIAQVARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSKT--NSASTRRHVELALCHLAQNEDNARDFISRGGA 565 (600)
Q Consensus 488 v~~~A~~aL~nLa~~~~~~~~q~~~~~r~~l~e~g~l~~Lv~Ll~s--~~~~v~~~Aa~aL~nLa~~~~~~~~lv~~G~l 565 (600)
+|..|+++|..++...|+ -+.+.++.+..+ .+.++|..|..+|... +|.. ..+
T Consensus 540 ~R~~Ai~Alr~~~~~~~~----------------~v~~~l~~I~~n~~e~~EvRiaA~~~lm~~--~P~~-------~~l 594 (618)
T PF01347_consen 540 IRVAAIQALRRLAKHCPE----------------KVREILLPIFMNTTEDPEVRIAAYLILMRC--NPSP-------SVL 594 (618)
T ss_dssp HHHHHHHTTTTGGGT-HH----------------HHHHHHHHHHH-TTS-HHHHHHHHHHHHHT-----H-------HHH
T ss_pred HHHHHHHHHHHHhhcCcH----------------HHHHHHHHHhcCCCCChhHHHHHHHHHHhc--CCCH-------HHH
Confidence 899999999999766532 245667776655 3566777776666553 2221 123
Q ss_pred HHHHHhhhcCChHHHHHHHHHHH
Q 007520 566 KELVQISIESSREDIRNLAKKTM 588 (600)
Q Consensus 566 ~~Lv~ll~~~~~~~ir~~A~~~L 588 (600)
..+...+......++....+..|
T Consensus 595 ~~i~~~l~~E~~~QV~sfv~S~L 617 (618)
T PF01347_consen 595 QRIAQSLWNEPSNQVASFVYSHL 617 (618)
T ss_dssp HHHHHHHTT-S-HHHHHHHHHHH
T ss_pred HHHHHHHhhCchHHHHHHHHHhc
Confidence 44445555444455655554443
No 329
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=81.44 E-value=37 Score=40.28 Aligned_cols=169 Identities=18% Similarity=0.153 Sum_probs=0.0
Q ss_pred HHHHHHHHHhHHHHHHHhhhHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHhhhhhhhhhhhhhHHhhhhhhhhhhhHHH
Q 007520 102 DESMRNLVTRSEFLEKENAHLELEVEKILGELNHQKDQNNLKREKIVQLEISLKNSKQYEMENSTYQKALADTTQLYEKK 181 (600)
Q Consensus 102 ~~~~~~l~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~ 181 (600)
.........-.+||..+...++.+++.....++.-|..++.... . .....+.+
T Consensus 186 ~~k~~~~~~a~~~L~~ql~~l~~~l~~aE~~l~~fk~~~~l~~~--~-------------------------~~~~~~~~ 238 (754)
T TIGR01005 186 AAKSESNTAAADFLAPEIADLSKQSRDAEAEVAAYRAQSDLLMG--N-------------------------NATLATQQ 238 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccc--C-------------------------CccchHHH
Q ss_pred HHHHHHHhHhHHHhhhhhHHHHHHHHHHHhhh-----------------hhcccchhhHHHHHHHHHHHHHHHHHHHHHH
Q 007520 182 IAELNKKLEDEHACFEGAVEQLDMVKKLLSDY-----------------QNSNQGQKEVHELCVKLKETRQLHESAVYEV 244 (600)
Q Consensus 182 ~~~l~~~l~~e~~~~~~~~~~~~~~~~~~~~~-----------------q~~~~~~~e~~~l~~~~~d~~~~~e~~~~el 244 (600)
+.+|...|..-.+.+.+++.+++.+++.+... .....-..++.+++..+.++...|...-|.+
T Consensus 239 L~~l~~ql~~a~~~~~~a~a~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~L~~~l~~l~~~~~~l~~~y~~~hP~v 318 (754)
T TIGR01005 239 LAELNTELSRARANRAAAEGTADSVKKALQNGGSLDVLPEVLSSQLKLEDLIQRLRERQAELRATIADLSTTMLANHPRV 318 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchhhhhcCcccccHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHH
Q ss_pred HHHHHHHHHHHHhhhhchHHHHHHHHhhhHHHHhhh-hHHHHHHHHhccCCCCC
Q 007520 245 QTLKSEYKNLLEEKETMSDELQAARQRLLVEEKQRK-AIEYELVKLKKTAPEHD 297 (600)
Q Consensus 245 ~~l~~~~~~l~~~~~~~~~el~~~~~~l~~e~~~~~-~le~~~~~l~~~l~~l~ 297 (600)
+.++.++++++++.+.....+..-.+.-.+...+.. .++..++.+......+.
T Consensus 319 ~~l~~qi~~l~~~i~~e~~~~~~~~~~~~~~a~~~~~~L~~~l~~~~~~~~~~~ 372 (754)
T TIGR01005 319 VAAKSSLADLDAQIRSELQKITKSLLMQADAAQARESQLVSDVNQLKAASAQAG 372 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
No 330
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.39 E-value=72 Score=39.07 Aligned_cols=192 Identities=13% Similarity=0.119 Sum_probs=106.7
Q ss_pred CCCCHHHHHHHHHHHHHhhC-Cc-chHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhc--C--Cc--cH-HHHH
Q 007520 357 TSEDPDVQIHAVKVVANLAA-ED-INQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAM--N--EM--NQ-GLIM 427 (600)
Q Consensus 357 ~s~~~~vr~~Aa~aL~nLa~-~~-~~~~~iv~~G~I~~Lv~lL~~~~~~~v~~~Al~aL~NLa~--~--~~--~r-~~I~ 427 (600)
++.....+..++.+|..|.. .+ ++...+... |+.++-.+. ..+...++.|..+|..++. . ++ .+ ..++
T Consensus 707 qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k~--I~EvIL~~K-e~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~l 783 (1176)
T KOG1248|consen 707 QSSSSPAQASRLKCLKRLLKLLSAEHCDLIPKL--IPEVILSLK-EVNVKARRNAFALLVFIGAIQSSLDDGNEPASAIL 783 (1176)
T ss_pred hccchHHHHHHHHHHHHHHHhccHHHHHHHHHH--HHHHHHhcc-cccHHHHhhHHHHHHHHHHHHhhhcccccchHHHH
Confidence 34455666677777776665 33 344444443 555555554 5677788888888888872 1 11 12 2233
Q ss_pred HhCchhhhHhhhccCCCHHHHHHHHHHHHHHhCC-chhHHHHHHcChHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchh
Q 007520 428 SRGGGQLLAKTASKTDDPQTLRMVAGALANLCGN-EKLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFAKCESRA 506 (600)
Q Consensus 428 ~~G~I~~Lv~lL~~~~~~~v~~~Aa~aL~nLa~~-~e~r~~i~~~G~i~~Lv~lL~s~~~~v~~~A~~aL~nLa~~~~~~ 506 (600)
+. .++.|...+.. +.+.+...-+-++..+..+ ...-....-.+.+..+..+|.+.++.++..|.+.+.-++..-|..
T Consensus 784 ne-fl~~Isagl~g-d~~~~~as~Ivai~~il~e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~ 861 (1176)
T KOG1248|consen 784 NE-FLSIISAGLVG-DSTRVVASDIVAITHILQEFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEE 861 (1176)
T ss_pred HH-HHHHHHhhhcc-cHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHH
Confidence 32 34444333321 1211111112233333311 111111111345556666778999999999999999998776654
Q ss_pred hhhcchhhHHHHHhCCcHHHHHHhhcCCCHHHHHHHHHHHHHhhc--CchhHHHHHH
Q 007520 507 IVQGQRKGRSHLMEDSALEWLIANSKTNSASTRRHVELALCHLAQ--NEDNARDFIS 561 (600)
Q Consensus 507 ~~q~~~~~r~~l~e~g~l~~Lv~Ll~s~~~~v~~~Aa~aL~nLa~--~~~~~~~lv~ 561 (600)
+.. -...-.+|.++.+++...-.++..+-..|-.|.. +.+....+..
T Consensus 862 ~l~--------~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekLirkfg~~eLe~~~p 910 (1176)
T KOG1248|consen 862 CLS--------PHLEELLPSLLALSHDHKIKVRKKVRLLLEKLIRKFGAEELESFLP 910 (1176)
T ss_pred HHh--------hhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhCHHHHHhhCH
Confidence 322 1112367888888888888888888888777753 3333344443
No 331
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=81.39 E-value=1.1e+02 Score=35.17 Aligned_cols=19 Identities=37% Similarity=0.641 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHhhhHHHHH
Q 007520 88 YEFEKQLRESQISYDESMR 106 (600)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~ 106 (600)
..|++++.+.+..|.+.+.
T Consensus 314 ~e~~~~~~~l~~~~~~~L~ 332 (582)
T PF09731_consen 314 EEFEREREELEEKYEEELR 332 (582)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4455555555555554443
No 332
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=81.34 E-value=69 Score=32.92 Aligned_cols=37 Identities=22% Similarity=0.367 Sum_probs=22.3
Q ss_pred HHHHHHhHHHHHHHhhhHHHHHHHHHhhhhhhhhhhh
Q 007520 105 MRNLVTRSEFLEKENAHLELEVEKILGELNHQKDQNN 141 (600)
Q Consensus 105 ~~~l~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 141 (600)
|..|+.+++.|.||+-.=---|+.|...|++||-...
T Consensus 20 IqelE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e 56 (307)
T PF10481_consen 20 IQELEQQLDKLKKERQQRQFQLESLEAALQKQKQKVE 56 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 4456666666666666666666666666666655433
No 333
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=81.19 E-value=10 Score=36.09 Aligned_cols=107 Identities=20% Similarity=0.132 Sum_probs=68.2
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHhhCCcchHHHHHHcCC--HHHHHHHHccCCCHHHHHHHHHHHHHhhcC----Ccc
Q 007520 349 LPKILQLLTSEDPDVQIHAVKVVANLAAEDINQEKIVEEGG--LDALLLLLRTSQNTTILRVASGAIANLAMN----EMN 422 (600)
Q Consensus 349 V~~Lv~LL~s~~~~vr~~Aa~aL~nLa~~~~~~~~iv~~G~--I~~Lv~lL~~~~~~~v~~~Al~aL~NLa~~----~~~ 422 (600)
+..+..+|.+.++..|-.++..+...+...+ ...+...|+ +..|+.+|....+..+...|+.+|..|... ++.
T Consensus 27 ~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~-~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p~l 105 (165)
T PF08167_consen 27 VTRINSLLQSKSAYSRWAGLCLLKVTVEQCS-WEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKPTL 105 (165)
T ss_pred HHHHHHHhCCCChhhHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCch
Confidence 4456688899998888877777766655321 344444443 788899999777888889999998888643 555
Q ss_pred HHHHHHh---CchhhhHhhhccCCCHHHHHHHHHHHHHHh
Q 007520 423 QGLIMSR---GGGQLLAKTASKTDDPQTLRMVAGALANLC 459 (600)
Q Consensus 423 r~~I~~~---G~I~~Lv~lL~~~~~~~v~~~Aa~aL~nLa 459 (600)
.+.+... +.++.++.++.. +.....++.+|..+.
T Consensus 106 ~Rei~tp~l~~~i~~ll~l~~~---~~~~~~~l~~L~~ll 142 (165)
T PF08167_consen 106 TREIATPNLPKFIQSLLQLLQD---SSCPETALDALATLL 142 (165)
T ss_pred HHHHhhccHHHHHHHHHHHHhc---cccHHHHHHHHHHHH
Confidence 5555442 334445555432 344455556666553
No 334
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=80.95 E-value=33 Score=40.60 Aligned_cols=179 Identities=18% Similarity=0.138 Sum_probs=102.2
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHhhCCcchHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcCCccHHHHHH
Q 007520 349 LPKILQLLTSEDPDVQIHAVKVVANLAAEDINQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMNEMNQGLIMS 428 (600)
Q Consensus 349 V~~Lv~LL~s~~~~vr~~Aa~aL~nLa~~~~~~~~iv~~G~I~~Lv~lL~~~~~~~v~~~Al~aL~NLa~~~~~r~~I~~ 428 (600)
+|.++.+-......++......+.-++..-+ ..+...-.-+.+...+. +....++..|+..|.-++..-......
T Consensus 481 Lp~i~el~~d~~wRvr~ail~~ip~la~q~~--~~~~~~~~~~l~~~~l~-d~v~~Ir~~aa~~l~~l~~~~G~~w~~-- 555 (759)
T KOG0211|consen 481 LPAIVELAEDLLWRVRLAILEYIPQLALQLG--VEFFDEKLAELLRTWLP-DHVYSIREAAARNLPALVETFGSEWAR-- 555 (759)
T ss_pred hhhhhhhccchhHHHHHHHHHHHHHHHHhhh--hHHhhHHHHHHHHhhhh-hhHHHHHHHHHHHhHHHHHHhCcchhH--
Confidence 4444444444456666666666666665332 11221111222223333 334467888887777776541111111
Q ss_pred hCchhhhHhhhccCCCHHHHHHHH---HHHHHHhCCchhHHHHHHcChHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCch
Q 007520 429 RGGGQLLAKTASKTDDPQTLRMVA---GALANLCGNEKLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFAKCESR 505 (600)
Q Consensus 429 ~G~I~~Lv~lL~~~~~~~v~~~Aa---~aL~nLa~~~e~r~~i~~~G~i~~Lv~lL~s~~~~v~~~A~~aL~nLa~~~~~ 505 (600)
.-.++.++.+..+ ++-..+...+ ..|..+.+.+ +.....++.+..+..++.+.|+.+++..|.-+...-
T Consensus 556 ~~~i~k~L~~~~q-~~y~~R~t~l~si~~la~v~g~e-----i~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~L-- 627 (759)
T KOG0211|consen 556 LEEIPKLLAMDLQ-DNYLVRMTTLFSIHELAEVLGQE-----ITCEDLLPVFLDLVKDPVANVRINVAKHLPKILKLL-- 627 (759)
T ss_pred HHhhHHHHHHhcC-cccchhhHHHHHHHHHHHHhccH-----HHHHHHhHHHHHhccCCchhhhhhHHHHHHHHHhhc--
Confidence 1134555555433 2223333333 3444444554 333457888999999999999999999999987542
Q ss_pred hhhhcchhhHHHHHhCCcHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 007520 506 AIVQGQRKGRSHLMEDSALEWLIANSKTNSASTRRHVELALCHL 549 (600)
Q Consensus 506 ~~~q~~~~~r~~l~e~g~l~~Lv~Ll~s~~~~v~~~Aa~aL~nL 549 (600)
-....+.-+.|.+..+..+.+..++..|..++..+
T Consensus 628 ---------~~~~~~~~v~pll~~L~~d~~~dvr~~a~~a~~~i 662 (759)
T KOG0211|consen 628 ---------DESVRDEEVLPLLETLSSDQELDVRYRAILAFGSI 662 (759)
T ss_pred ---------chHHHHHHHHHHHHHhccCcccchhHHHHHHHHHH
Confidence 11244455777888888888888888877777655
No 335
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=80.71 E-value=90 Score=34.66 Aligned_cols=172 Identities=15% Similarity=0.161 Sum_probs=101.3
Q ss_pred CHHHHHHHHHHHHHhhCCc--chHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcCCccHHHHHHhCchhhhHh
Q 007520 360 DPDVQIHAVKVVANLAAED--INQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMNEMNQGLIMSRGGGQLLAK 437 (600)
Q Consensus 360 ~~~vr~~Aa~aL~nLa~~~--~~~~~iv~~G~I~~Lv~lL~~~~~~~v~~~Al~aL~NLa~~~~~r~~I~~~G~I~~Lv~ 437 (600)
...-+..|..-|..+.... ......... .+..++.+|.++.+..++..|++.|.-++.+...+-.=...-+|..+++
T Consensus 300 ~a~~~k~alsel~~m~~e~sfsvWeq~f~~-iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Le 378 (516)
T KOG2956|consen 300 RASERKEALSELPKMLCEGSFSVWEQHFAE-ILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLE 378 (516)
T ss_pred chhHHHHHHHHHHHHHHccchhHHHHHHHH-HHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHH
Confidence 3444555666455544322 122222222 4667888898768888999999999999987332221111224555555
Q ss_pred hhccCCCHHHHHHHHH-HHHHHhCCchhHHHHHHcChHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchhhhhcchhhHH
Q 007520 438 TASKTDDPQTLRMVAG-ALANLCGNEKLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFAKCESRAIVQGQRKGRS 516 (600)
Q Consensus 438 lL~~~~~~~v~~~Aa~-aL~nLa~~~e~r~~i~~~G~i~~Lv~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~q~~~~~r~ 516 (600)
.-.+ .++.+...|.. |+.-++.....+ .|..+..++-..|...-..++..+..+...- ..+
T Consensus 379 aa~d-s~~~v~~~Aeed~~~~las~~P~~-------~I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l----------~~E 440 (516)
T KOG2956|consen 379 AAKD-SQDEVMRVAEEDCLTTLASHLPLQ-------CIVNISPLILTADEPRAVAVIKMLTKLFERL----------SAE 440 (516)
T ss_pred HHhC-CchhHHHHHHHHHHHHHHhhCchh-------HHHHHhhHHhcCcchHHHHHHHHHHHHHhhc----------CHH
Confidence 5433 34466666665 555555432222 2333444444455555555666666666431 112
Q ss_pred HHHh--CCcHHHHHHhhcCCCHHHHHHHHHHHHHhh
Q 007520 517 HLME--DSALEWLIANSKTNSASTRRHVELALCHLA 550 (600)
Q Consensus 517 ~l~e--~g~l~~Lv~Ll~s~~~~v~~~Aa~aL~nLa 550 (600)
.+.. ....|.++....+.+..||..|+++|..|.
T Consensus 441 eL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv 476 (516)
T KOG2956|consen 441 ELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMV 476 (516)
T ss_pred HHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHH
Confidence 2222 568899999999999999999999998874
No 336
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=80.42 E-value=1.5e+02 Score=36.41 Aligned_cols=24 Identities=8% Similarity=0.136 Sum_probs=12.7
Q ss_pred hhHHHHHHHHHHHhhhhhcccchh
Q 007520 198 GAVEQLDMVKKLLSDYQNSNQGQK 221 (600)
Q Consensus 198 ~~~~~~~~~~~~~~~~q~~~~~~~ 221 (600)
.+-+-+....+|+|+...-.+..+
T Consensus 1536 ~T~~di~ra~~L~s~A~~a~~~A~ 1559 (1758)
T KOG0994|consen 1536 RTKGDIARAENLQSEAERARSRAE 1559 (1758)
T ss_pred hhhhhHHHHHHHHHHHHHHHhHHH
Confidence 333444446666666555554444
No 337
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=80.41 E-value=33 Score=39.87 Aligned_cols=78 Identities=28% Similarity=0.382 Sum_probs=53.5
Q ss_pred hHHHhHHHHHHHHHHhHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhchhHHHHHHH
Q 007520 15 YESLCRKLETQVDHLTAEIERKQKLRENDKCELEKLLRECQISYDEAKDNLVTQVELLTAKIEMQQKLRENDKYEFEKQL 94 (600)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (600)
|+-+..+|.+.-.+.++|.||++|.-| -.|.||.-+|+.. +.-..+.|+-.++.||+.+ ...|.|.
T Consensus 905 ~e~~~~~l~sk~~q~~~e~er~rk~qE--~~E~ER~rrEaee------k~rre~ee~k~~k~e~e~k------RK~eEeq 970 (1259)
T KOG0163|consen 905 YEKLVKRLDSKEQQQIEELERLRKIQE--LAEAERKRREAEE------KRRREEEEKKRAKAEMETK------RKAEEEQ 970 (1259)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHH--HHHHHHHhhhhhH------HHHHHHHHHHHHHHHHHHH------HHHHHHH
Confidence 888999999888888999999999875 4677766666532 1112244555566666665 4467777
Q ss_pred HHHHhhhHHHHH
Q 007520 95 RESQISYDESMR 106 (600)
Q Consensus 95 ~~~~~~~~~~~~ 106 (600)
++-|.+|.-.+.
T Consensus 971 r~~qee~e~~l~ 982 (1259)
T KOG0163|consen 971 RKAQEEEERRLA 982 (1259)
T ss_pred HHhhhhHHHHHH
Confidence 777877766554
No 338
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=80.18 E-value=22 Score=35.68 Aligned_cols=133 Identities=12% Similarity=0.118 Sum_probs=83.5
Q ss_pred HHHHHHHhhCCcchHHHHHHcCCHHHHHHHHc----cCCCHHHHHHHHHHHHHhhcC--CccHHHHHHhCchhhhHhhhc
Q 007520 367 AVKVVANLAAEDINQEKIVEEGGLDALLLLLR----TSQNTTILRVASGAIANLAMN--EMNQGLIMSRGGGQLLAKTAS 440 (600)
Q Consensus 367 Aa~aL~nLa~~~~~~~~iv~~G~I~~Lv~lL~----~~~~~~v~~~Al~aL~NLa~~--~~~r~~I~~~G~I~~Lv~lL~ 440 (600)
|...|.-++++|+.+..++++...-.|..+|. +.+-+-++-.+++++..|..+ ++....+.....+|..+.++.
T Consensus 120 aL~lLQclaShPetk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcLrIme 199 (315)
T COG5209 120 ALNLLQCLASHPETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCLRIME 199 (315)
T ss_pred HHHHHHHHhcCcchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHHHHHH
Confidence 44444456678999999998855333444443 233455777899999999988 456777777889999999985
Q ss_pred cCCCHHHHHHHHHHHHHHhCCchhHHHHHH----cChHHH----HHH-HHcCCCHHHHHHHHHHHHHhh
Q 007520 441 KTDDPQTLRMVAGALANLCGNEKLHTMLEE----DGAIKA----LLA-MVRSGNIDVIAQVARGLANFA 500 (600)
Q Consensus 441 ~~~~~~v~~~Aa~aL~nLa~~~e~r~~i~~----~G~i~~----Lv~-lL~s~~~~v~~~A~~aL~nLa 500 (600)
. ++..-..-|+..+.-+.+++.+-..+.. --+|.. ++. +...+...+...+.++-..|+
T Consensus 200 ~-gSElSktvaifI~qkil~dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcYlRLs 267 (315)
T COG5209 200 L-GSELSKTVAIFIFQKILGDDVGLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCYLRLS 267 (315)
T ss_pred h-hhHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHheeec
Confidence 3 4434444455566666666655444432 222222 222 224566667777777777776
No 339
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=80.16 E-value=18 Score=38.98 Aligned_cols=93 Identities=18% Similarity=0.212 Sum_probs=67.0
Q ss_pred HHHHHHHHccCCCHHHHHHHHHHHHHhhcCCccHHHHHHhCchhhhHhhhccCCCHHHHHHHHHHHHH-HhCCchhHHHH
Q 007520 390 LDALLLLLRTSQNTTILRVASGAIANLAMNEMNQGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALAN-LCGNEKLHTML 468 (600)
Q Consensus 390 I~~Lv~lL~~~~~~~v~~~Al~aL~NLa~~~~~r~~I~~~G~I~~Lv~lL~~~~~~~v~~~Aa~aL~n-La~~~e~r~~i 468 (600)
+..++.-+.++.+..++..++.-|+.-+.++..+..+.+.|.+..++..+...++..+...++.++.. |+.+...-..+
T Consensus 23 v~ylld~l~~~~~~s~Rr~sll~La~K~~~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~~~l~ 102 (361)
T PF07814_consen 23 VEYLLDGLESSSSSSVRRSSLLELASKCADPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGLNMHLL 102 (361)
T ss_pred HHHHHhhcccCCCccHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCcchhhh
Confidence 56666666656677789999999999999999999999999999999999554443344444444444 45555455555
Q ss_pred HHcChHHHHHHHHc
Q 007520 469 EEDGAIKALLAMVR 482 (600)
Q Consensus 469 ~~~G~i~~Lv~lL~ 482 (600)
.+.+.+..++.++.
T Consensus 103 ~~~~~~~ll~~Ll~ 116 (361)
T PF07814_consen 103 LDRDSLRLLLKLLK 116 (361)
T ss_pred hchhHHHHHHHHhc
Confidence 56677777777776
No 340
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=80.12 E-value=64 Score=31.80 Aligned_cols=38 Identities=29% Similarity=0.376 Sum_probs=27.3
Q ss_pred hhhhhhhhh-hhhhHHhhhhhhhhhhhHHHHHHHHHHhH
Q 007520 153 SLKNSKQYE-MENSTYQKALADTTQLYEKKIAELNKKLE 190 (600)
Q Consensus 153 ~~~~~~~~~-~~n~~~~~~l~~~~~~~~~~~~~l~~~l~ 190 (600)
.+...+|.- +.|.-.++.|..-....+..-++|...|.
T Consensus 133 ~i~evqQk~~~kn~lLEkKl~~l~~~lE~keaqL~evl~ 171 (201)
T PF13851_consen 133 AIQEVQQKTGLKNLLLEKKLQALSEQLEKKEAQLNEVLA 171 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555 77777788888888888888888887776
No 341
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=80.00 E-value=95 Score=33.73 Aligned_cols=156 Identities=13% Similarity=0.140 Sum_probs=98.6
Q ss_pred HHHHHHHHhhc-C---CccHHHHHHhCchh-hhHhhhccC--CCHHHHHHHHHHHHHHhCC-chhHHHHHHcChHHHHHH
Q 007520 408 VASGAIANLAM-N---EMNQGLIMSRGGGQ-LLAKTASKT--DDPQTLRMVAGALANLCGN-EKLHTMLEEDGAIKALLA 479 (600)
Q Consensus 408 ~Al~aL~NLa~-~---~~~r~~I~~~G~I~-~Lv~lL~~~--~~~~v~~~Aa~aL~nLa~~-~e~r~~i~~~G~i~~Lv~ 479 (600)
..+.++..+.. . .+.-+.+++.+.++ .|..++.+. -.+.+...|+.++..+.++ |..-..+.+.|.++.++.
T Consensus 79 ~lLk~l~~~~~~~~~~~~~lrnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~ 158 (379)
T PF06025_consen 79 SLLKFLSHAMQHSGGFGDRLRNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLD 158 (379)
T ss_pred HHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHH
Confidence 34445555555 2 22222344434433 344555442 2446778888888888765 677788889999999999
Q ss_pred HHc-C---CCHHHHHHHHHHHHHhhcCCchhhhhcchhhHHHHHhCCcHHHHHHhhcCCCH-------HHHHHHHHHHHH
Q 007520 480 MVR-S---GNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSKTNSA-------STRRHVELALCH 548 (600)
Q Consensus 480 lL~-s---~~~~v~~~A~~aL~nLa~~~~~~~~q~~~~~r~~l~e~g~l~~Lv~Ll~s~~~-------~v~~~Aa~aL~n 548 (600)
.+. . ++.++....-.+|..||-. ..|.+.+.+.+.++.++.++.+.+. ..-...-.++-.
T Consensus 159 ~i~~~~i~~s~e~l~~lP~~l~AicLN---------~~Gl~~~~~~~~l~~~f~if~s~~~~~~l~~~d~a~~lG~~~DE 229 (379)
T PF06025_consen 159 AITAKGILPSSEVLTSLPNVLSAICLN---------NRGLEKVKSSNPLDKLFEIFTSPDYVKALRRRDTASNLGNSFDE 229 (379)
T ss_pred HHhccCCCCcHHHHHHHHHHHhHHhcC---------HHHHHHHHhcChHHHHHHHhCCHHHHHHhcccchHHHHHHHHHH
Confidence 886 3 5667777788888888865 5788889999999999998876532 222333445556
Q ss_pred hhcCch-hHHHHHHcccHHHHHHhhh
Q 007520 549 LAQNED-NARDFISRGGAKELVQISI 573 (600)
Q Consensus 549 La~~~~-~~~~lv~~G~l~~Lv~ll~ 573 (600)
|.++.+ .+..+++. .+..+-++..
T Consensus 230 L~RH~p~Lk~~i~~~-ii~~l~~l~~ 254 (379)
T PF06025_consen 230 LMRHHPSLKPDIIDA-IIKILDRLVE 254 (379)
T ss_pred HHccCHHHHHHHHHH-HHHHHHHHHH
Confidence 666544 44444433 4454444443
No 342
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.63 E-value=25 Score=43.92 Aligned_cols=154 Identities=15% Similarity=0.075 Sum_probs=85.2
Q ss_pred CHHHHH--HhhCCCCHHHHHHHHHHHHHhhCCcchHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcC--CccH
Q 007520 348 GLPKIL--QLLTSEDPDVQIHAVKVVANLAAEDINQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMN--EMNQ 423 (600)
Q Consensus 348 gV~~Lv--~LL~s~~~~vr~~Aa~aL~nLa~~~~~~~~iv~~G~I~~Lv~lL~~~~~~~v~~~Al~aL~NLa~~--~~~r 423 (600)
.+|.|+ .++ +.-+++|..+...+..|+.+.+..-...-...||.|+.+...-.+.-+-..++++ .|.... +..|
T Consensus 1131 iLPfLl~~gim-s~v~evr~~si~tl~dl~Kssg~~lkP~~~~LIp~ll~~~s~lE~~vLnYls~r~-~~~e~ealDt~R 1208 (1702)
T KOG0915|consen 1131 ILPFLLDEGIM-SKVNEVRRFSIGTLMDLAKSSGKELKPHFPKLIPLLLNAYSELEPQVLNYLSLRL-INIETEALDTLR 1208 (1702)
T ss_pred HHHHHhccCcc-cchHHHHHHHHHHHHHHHHhchhhhcchhhHHHHHHHHHccccchHHHHHHHHhh-hhhHHHHHHHHH
Confidence 355555 334 7788999999999999998554422222223488888887644444344444444 333322 2333
Q ss_pred HHHHHh--------------------CchhhhHhhhccCCCHHHHHHHHHHHHHHhCC--chhHHHHHHcChHHHHHHHH
Q 007520 424 GLIMSR--------------------GGGQLLAKTASKTDDPQTLRMVAGALANLCGN--EKLHTMLEEDGAIKALLAMV 481 (600)
Q Consensus 424 ~~I~~~--------------------G~I~~Lv~lL~~~~~~~v~~~Aa~aL~nLa~~--~e~r~~i~~~G~i~~Lv~lL 481 (600)
..+... ..+|.+.++++.+-.-.++..++..++-|+.. .+... .....+.+++..+
T Consensus 1209 ~s~aksspmmeTi~~ci~~iD~~vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~emtP--~sgKll~al~~g~ 1286 (1702)
T KOG0915|consen 1209 ASAAKSSPMMETINKCINYIDISVLEELIPRLTELVRGSVGLGTKVGCASFISLLVQRLGSEMTP--YSGKLLRALFPGA 1286 (1702)
T ss_pred HhhhcCCcHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhccccCc--chhHHHHHHhhcc
Confidence 333221 23444445544332223333344444433311 01111 0112566777778
Q ss_pred cCCCHHHHHHHHHHHHHhhcCCch
Q 007520 482 RSGNIDVIAQVARGLANFAKCESR 505 (600)
Q Consensus 482 ~s~~~~v~~~A~~aL~nLa~~~~~ 505 (600)
++.++.++...+.+++.|+...+.
T Consensus 1287 ~dRNesv~kafAsAmG~L~k~Ss~ 1310 (1702)
T KOG0915|consen 1287 KDRNESVRKAFASAMGYLAKFSSP 1310 (1702)
T ss_pred ccccHHHHHHHHHHHHHHHhcCCh
Confidence 889999999999999999877644
No 343
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=79.54 E-value=88 Score=33.02 Aligned_cols=208 Identities=11% Similarity=0.048 Sum_probs=140.4
Q ss_pred HHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhC-CcchHHHHHHc--CCHHHHHHHHccCCC-HHHHHHHHHHHHHh
Q 007520 341 AKICDEVGLPKILQLLTSEDPDVQIHAVKVVANLAA-EDINQEKIVEE--GGLDALLLLLRTSQN-TTILRVASGAIANL 416 (600)
Q Consensus 341 ~~i~e~GgV~~Lv~LL~s~~~~vr~~Aa~aL~nLa~-~~~~~~~iv~~--G~I~~Lv~lL~~~~~-~~v~~~Al~aL~NL 416 (600)
..+..+|.+..++..+...+-+.+..++.+..|+-. .-+++...++. .-...+-.++....+ +++.-.|...|...
T Consensus 73 qef~~~~~l~~lI~~l~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~~~~~~~iaL~cg~mlrEc 152 (342)
T KOG1566|consen 73 QEFYNADVLSLLIQHLPKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKGYENTPEIALTCGNMLREC 152 (342)
T ss_pred HHHHhCCchHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhhhccchHHHHHHHHHHHHH
Confidence 456778889999999998888889888888888775 33333332221 013333344443443 66777777778887
Q ss_pred hcCCccHHHHHHhCchhhhHhhhccCCCHHHHHHHHHHHHHHhC-CchhHHHHHHcC---hHHH-HHHHHcCCCHHHHHH
Q 007520 417 AMNEMNQGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLCG-NEKLHTMLEEDG---AIKA-LLAMVRSGNIDVIAQ 491 (600)
Q Consensus 417 a~~~~~r~~I~~~G~I~~Lv~lL~~~~~~~v~~~Aa~aL~nLa~-~~e~r~~i~~~G---~i~~-Lv~lL~s~~~~v~~~ 491 (600)
..++.....|.....+......+.. +.-++...|..+...+.. .......+.... ..+. --.++++++.-++..
T Consensus 153 irhe~LakiiL~s~~~~~FF~~vq~-p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~Nyvtkrq 231 (342)
T KOG1566|consen 153 IRHEFLAKIILESTNFEKFFLYVQL-PNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSENYVTKRQ 231 (342)
T ss_pred HhhHHHHHHHHcchhHHHHHHHHhc-cchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhcccceehHHH
Confidence 8888888888876666665555533 455777778877777643 334444444432 2233 444568999999999
Q ss_pred HHHHHHHhhcCCchhhhhcchhhHHHHHhCCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCch
Q 007520 492 VARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSKTNSASTRRHVELALCHLAQNED 554 (600)
Q Consensus 492 A~~aL~nLa~~~~~~~~q~~~~~r~~l~e~g~l~~Lv~Ll~s~~~~v~~~Aa~aL~nLa~~~~ 554 (600)
+..+|+.+-.+.++.. ..-.-+.....+..+..++++++..+|-.|-....-...++.
T Consensus 232 s~kllg~llldr~N~~-----~M~kYiss~enLKlmM~llrdkskniQ~eAFhvFKvfvAnpn 289 (342)
T KOG1566|consen 232 SLKLLGELLLDRSNSA-----VMTKYISSPENLKLMMNLLRDKSKNIQLEAFHVFKVFVANPN 289 (342)
T ss_pred HHHhHHHHHhCCCcHH-----HHHHHhcCHHHHHHHHHHhhCccccchHHHHHHHHHHhcCCC
Confidence 9999999987754421 122223334678889999999999999999999999887664
No 344
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=79.44 E-value=28 Score=41.49 Aligned_cols=47 Identities=21% Similarity=0.301 Sum_probs=32.9
Q ss_pred HHhHHHHHHHHHHhHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHhh
Q 007520 17 SLCRKLETQVDHLTAEIERKQKLRENDKCELEKLLRECQISYDEAKD 63 (600)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 63 (600)
++....+.++++|+++.+++.+..+.+..++++...|++....+.+.
T Consensus 504 ~~~~~~~~~~~~li~~L~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~ 550 (771)
T TIGR01069 504 TFYGEFKEEINVLIEKLSALEKELEQKNEHLEKLLKEQEKLKKELEQ 550 (771)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456677888899988888888876666666666666655555555
No 345
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.40 E-value=71 Score=31.90 Aligned_cols=108 Identities=11% Similarity=0.131 Sum_probs=65.6
Q ss_pred HHHhHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH---HHHHhhhchhHHHHHHHHHHHhhhHH
Q 007520 27 DHLTAEIERKQKLRENDKCELEKLLRECQISYDEAKDNLVTQVELLTAKIE---MQQKLRENDKYEFEKQLRESQISYDE 103 (600)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (600)
|+.+++++.+.+.++.=--+..+.....-..+.++-+.-..|.++|+..++ -+...+ .+|-.|.-.-|+--..
T Consensus 18 d~~~~~i~n~~s~~D~f~q~~r~~~~nS~~efar~lS~~~~e~e~l~~~l~etene~~~~----neL~~ek~~~q~~ieq 93 (246)
T KOG4657|consen 18 DICEKDIHNQRSKIDSFIQSPRRRSMNSLVEFARALSQSQVELENLKADLRETENELVKV----NELKTEKEARQMGIEQ 93 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence 455566666666554222233333333333333333333335666665443 344444 4455555555666778
Q ss_pred HHHHHHHhHHHHHHHhhhHHHHHHHHHhhhhhhhh
Q 007520 104 SMRNLVTRSEFLEKENAHLELEVEKILGELNHQKD 138 (600)
Q Consensus 104 ~~~~l~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~ 138 (600)
+++.+..++|.|.+-+..+.+|+.+.+..|-++..
T Consensus 94 eik~~q~elEvl~~n~Q~lkeE~dd~keiIs~kr~ 128 (246)
T KOG4657|consen 94 EIKATQSELEVLRRNLQLLKEEKDDSKEIISQKRQ 128 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 88889999999999999999999998888766664
No 346
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.03 E-value=17 Score=42.75 Aligned_cols=174 Identities=11% Similarity=0.075 Sum_probs=112.4
Q ss_pred CCCHHHHHHHHHHHHHhhcCCccHHHHHHhCchhhhHhhhccCCCHHHHHHHHHHHHHHhCCchhHHHHHHcChHHHHHH
Q 007520 400 SQNTTILRVASGAIANLAMNEMNQGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLCGNEKLHTMLEEDGAIKALLA 479 (600)
Q Consensus 400 ~~~~~v~~~Al~aL~NLa~~~~~r~~I~~~G~I~~Lv~lL~~~~~~~v~~~Aa~aL~nLa~~~e~r~~i~~~G~i~~Lv~ 479 (600)
++-..++..++..|+.+......+..+...+++.....+|.+ .|+-+.-+|+..+..||.- .....+|.|..
T Consensus 738 d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~Lkd-edsyvyLnaI~gv~~Lcev-------y~e~il~dL~e 809 (982)
T KOG4653|consen 738 DDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKD-EDSYVYLNAIRGVVSLCEV-------YPEDILPDLSE 809 (982)
T ss_pred CCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcc-cCceeeHHHHHHHHHHHHh-------cchhhHHHHHH
Confidence 344567888999999999877777778888999999999965 7778888888877777632 22346666666
Q ss_pred H-Hc---CCCHHHHHHHHHHHHHhhcCCchhhhhcchhhHHHHHhCCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCch-
Q 007520 480 M-VR---SGNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSKTNSASTRRHVELALCHLAQNED- 554 (600)
Q Consensus 480 l-L~---s~~~~v~~~A~~aL~nLa~~~~~~~~q~~~~~r~~l~e~g~l~~Lv~Ll~s~~~~v~~~Aa~aL~nLa~~~~- 554 (600)
. .. ...++.+..++.++.+++..-.+-. ..++. -.+...+..+++++...|..++.++++||.--.
T Consensus 810 ~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~----~~y~~-----~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~ 880 (982)
T KOG4653|consen 810 EYLSEKKKLQTDYRLKVGEAILKVAQALGELV----FKYKA-----VLINTFLSGVREPDHEFRASSLANLGQLCQLLAF 880 (982)
T ss_pred HHHhcccCCCccceehHHHHHHHHHHHhccHH----HHHHH-----HHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhh
Confidence 3 32 1224556667788888764322111 01111 234455556676777778889999999876322
Q ss_pred -hHHHHHHcccHHHHHHhhhcCChHHHHHHHHHHHhcCc
Q 007520 555 -NARDFISRGGAKELVQISIESSREDIRNLAKKTMKSNP 592 (600)
Q Consensus 555 -~~~~lv~~G~l~~Lv~ll~~~~~~~ir~~A~~~L~~~p 592 (600)
....+ +.++..++.+.+-.....+|-.|++++.++.
T Consensus 881 ~vsd~~--~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL 917 (982)
T KOG4653|consen 881 QVSDFF--HEVLQLILSLETTDGSVLVRRAAVHLLAELL 917 (982)
T ss_pred hhhHHH--HHHHHHHHHHHccCCchhhHHHHHHHHHHHH
Confidence 11222 2355556666665555668888887776544
No 347
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=79.03 E-value=29 Score=36.69 Aligned_cols=19 Identities=26% Similarity=0.204 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 007520 45 CELEKLLRECQISYDEAKD 63 (600)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~ 63 (600)
.++.+.+.+.+..-.++.+
T Consensus 60 ~~l~~eL~~LE~e~~~l~~ 78 (314)
T PF04111_consen 60 EELLQELEELEKEREELDQ 78 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444443
No 348
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=79.01 E-value=58 Score=31.39 Aligned_cols=30 Identities=30% Similarity=0.306 Sum_probs=16.3
Q ss_pred hhhHHHHHHHHHhHHHHHHHhhhHHHHHHH
Q 007520 99 ISYDESMRNLVTRSEFLEKENAHLELEVEK 128 (600)
Q Consensus 99 ~~~~~~~~~l~~~~~~~~~e~~~~~~~~~~ 128 (600)
.++-+.+..+...++.+.+|-+++..++++
T Consensus 126 ~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~ 155 (191)
T PF04156_consen 126 KSVEERLDSLDESIKELEKEIRELQKELQD 155 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455556666665555555555544444
No 349
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=79.00 E-value=1.2e+02 Score=34.39 Aligned_cols=55 Identities=18% Similarity=0.146 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHhhhchhHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHhhhHHHHH
Q 007520 68 QVELLTAKIEMQQKLRENDKYEFEKQLRESQISYDESMRNLVTRSEFLEKENAHLELEV 126 (600)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~e~~~~~~~~ 126 (600)
||..||..+..-- ..-..-++++......++.....+...++.-+++..+|..++
T Consensus 180 Ei~~lke~l~~~~----~a~~eAeee~~~~~~~~~~~~~~~~~~leeae~~l~~L~~e~ 234 (522)
T PF05701_consen 180 EIIALKESLESAK----LAHIEAEEERIEIAAEREQDAEEWEKELEEAEEELEELKEEL 234 (522)
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666521 111333444444444444444444444443333333333333
No 350
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=78.94 E-value=15 Score=35.59 Aligned_cols=137 Identities=16% Similarity=0.148 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHhhCC-cc-----hHHHHH------HcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcCCccHHHHHH--
Q 007520 363 VQIHAVKVVANLAAE-DI-----NQEKIV------EEGGLDALLLLLRTSQNTTILRVASGAIANLAMNEMNQGLIMS-- 428 (600)
Q Consensus 363 vr~~Aa~aL~nLa~~-~~-----~~~~iv------~~G~I~~Lv~lL~~~~~~~v~~~Al~aL~NLa~~~~~r~~I~~-- 428 (600)
+|..|..+|..++.. +. .-..+. ....-+.|+.++-.++++.++..|+.+|..|-.....--...+
T Consensus 2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~ 81 (182)
T PF13251_consen 2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEES 81 (182)
T ss_pred hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhc
Confidence 566777777777653 21 112222 1234566777666688999999999999988766311111111
Q ss_pred h---C---------------chhhhHhhhccCCCHHHHHHHHHHHHHHhCC-chhHHHHHHcChHHHHHH----HHcCCC
Q 007520 429 R---G---------------GGQLLAKTASKTDDPQTLRMVAGALANLCGN-EKLHTMLEEDGAIKALLA----MVRSGN 485 (600)
Q Consensus 429 ~---G---------------~I~~Lv~lL~~~~~~~v~~~Aa~aL~nLa~~-~e~r~~i~~~G~i~~Lv~----lL~s~~ 485 (600)
. + .-..|+..|....++.+....+.++..|+.+ |..|- ..|.++.++. ++.+.|
T Consensus 82 ~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL---~~~ll~~~v~~v~~~l~~~d 158 (182)
T PF13251_consen 82 KGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRL---PPGLLTEVVTQVRPLLRHRD 158 (182)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhc---CHhHHHHHHHHHHHHHhcCC
Confidence 0 1 1123444554445667888888899988755 33332 2355555444 456889
Q ss_pred HHHHHHHHHHHHHhhcC
Q 007520 486 IDVIAQVARGLANFAKC 502 (600)
Q Consensus 486 ~~v~~~A~~aL~nLa~~ 502 (600)
++++..++.++..+...
T Consensus 159 ~~v~v~~l~~~~~l~s~ 175 (182)
T PF13251_consen 159 PNVRVAALSCLGALLSV 175 (182)
T ss_pred CcHHHHHHHHHHHHHcC
Confidence 99999999999988754
No 351
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=78.93 E-value=1.3e+02 Score=34.80 Aligned_cols=263 Identities=19% Similarity=0.211 Sum_probs=129.6
Q ss_pred HHhHHHHHHHHHHhHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHhhhH---HHHHHHHHHHHHHHHHhhh---------
Q 007520 17 SLCRKLETQVDHLTAEIERKQKLRENDKCELEKLLRECQISYDEAKDNL---VTQVELLTAKIEMQQKLRE--------- 84 (600)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~--------- 84 (600)
-||-||=.+.+++. +-+=..|+|-.+=||.+.|.+..|---.+.+ .-+-|+|-.+|+.++....
T Consensus 78 ~LySKL~~EaEKIk----~WKv~vesd~~qKErkLqenrk~IEaqrKaIqELQf~NE~lSlKLee~i~en~dL~k~nnaT 153 (786)
T PF05483_consen 78 RLYSKLYKEAEKIK----KWKVQVESDLKQKERKLQENRKIIEAQRKAIQELQFENEKLSLKLEEEIQENKDLRKENNAT 153 (786)
T ss_pred HHHHHHHHHHHHHH----HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHhhHHHHHHhhhHH
Confidence 36667777777663 1111113333444444545444443333322 1155778888888876543
Q ss_pred ---------------chhHHHHHHHHHHHhhhHH---HHHHHHHhHHHHHHHhhhHHHHHH-HHHhhhhhhhh----hhh
Q 007520 85 ---------------NDKYEFEKQLRESQISYDE---SMRNLVTRSEFLEKENAHLELEVE-KILGELNHQKD----QNN 141 (600)
Q Consensus 85 ---------------~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~e~~~~~~~~~-~~~~~~~~~~~----~~~ 141 (600)
.-+..||-||-+-+.-|++ .|..+...+|.|+..-..-+.||. .++-...+=.+ +-.
T Consensus 154 R~lCNlLKeT~~rsaEK~~~yE~EREET~qly~~l~~niekMi~aFEeLR~qAEn~r~EM~fKlKE~~~k~~~leeey~~ 233 (786)
T PF05483_consen 154 RHLCNLLKETCQRSAEKMKKYEYEREETRQLYMDLNENIEKMIAAFEELRVQAENDRQEMHFKLKEDYEKFEDLEEEYKK 233 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2345788888888888886 455566677766654444445554 44434422222 222
Q ss_pred hHHHHHHHHHHhhhhhhhhhhhhhHHhhhhhhhhhhhHHHHHHHHHHhHhHHHhhhhhHHHHHHHHHHHhhh----hhcc
Q 007520 142 LKREKIVQLEISLKNSKQYEMENSTYQKALADTTQLYEKKIAELNKKLEDEHACFEGAVEQLDMVKKLLSDY----QNSN 217 (600)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~~~~~~~~~~~----q~~~ 217 (600)
+.+++-.+. ++=.++=...|| -.+-|-.-.+....++++|...-.-.+-....+...-+.+..-|.+. |.+.
T Consensus 234 E~n~kEkqv--s~L~~q~~eKen--~~kdl~~~l~es~~~~~qLeE~~~~q~E~Lkes~~~qe~L~~eL~~~K~slq~~~ 309 (786)
T PF05483_consen 234 EVNDKEKQV--SLLQTQLKEKEN--KIKDLLLLLQESQDKCNQLEEKTKEQHENLKESNEEQEHLLQELEDIKQSLQESE 309 (786)
T ss_pred HhhhHHHHH--HHHHHHHHhhHh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHH
Confidence 222222211 111111111222 12333344555556666666444433344455555555555555433 2222
Q ss_pred cch----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHhhhHHHHhhhhHHHHHHHHh
Q 007520 218 QGQ----KEVHELCVKLKETRQLHESAVYEVQTLKSEYKNLLEEKETMSDELQAARQRLLVEEKQRKAIEYELVKLK 290 (600)
Q Consensus 218 ~~~----~e~~~l~~~~~d~~~~~e~~~~el~~l~~~~~~l~~~~~~~~~el~~~~~~l~~e~~~~~~le~~~~~l~ 290 (600)
.++ ++++..-.-+..++.+.+.+.+|+...+..-+ .....+...+..+...|+.|.+..++.+..+-.+.
T Consensus 310 ~tq~~le~~lq~~~k~~~qlt~eKe~~~Ee~nk~k~~~s---~~v~e~qtti~~L~~lL~~Eqqr~~~~ed~lk~l~ 383 (786)
T PF05483_consen 310 STQKALEEDLQQATKTLIQLTEEKEAQMEELNKAKAQHS---FVVTELQTTICNLKELLTTEQQRLKKNEDQLKILT 383 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 222 24455566666777777777666444443221 11223344455556666666666666665444444
No 352
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=78.68 E-value=0.65 Score=54.62 Aligned_cols=97 Identities=30% Similarity=0.327 Sum_probs=0.0
Q ss_pred HHHHhHHHHHHHhhhHHHHHHHHHhhh---hhhhhhhhhHHHHHHHHHHhhhhhhhhhhhhhHHhhhhhhhhhhhHHHHH
Q 007520 107 NLVTRSEFLEKENAHLELEVEKILGEL---NHQKDQNNLKREKIVQLEISLKNSKQYEMENSTYQKALADTTQLYEKKIA 183 (600)
Q Consensus 107 ~l~~~~~~~~~e~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~ 183 (600)
.+..+.+.+++++..|..+..+|...- ..-++..+..+.+.. ...+++.+..+|.++|.| ..-|..++.
T Consensus 264 d~~~~~e~le~ei~~L~q~~~eL~~~A~~a~~LrDElD~lR~~a~-------r~~klE~~ve~YKkKLed-~~~lk~qvk 335 (713)
T PF05622_consen 264 DLKIELEELEKEIDELRQENEELQAEAREARALRDELDELREKAD-------RADKLENEVEKYKKKLED-LEDLKRQVK 335 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH-------HHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 334444455555555555555544332 222333333332222 122333444667777766 444555555
Q ss_pred HHHH----------HhHhHHHhhhhhHHHHHHHHHHHh
Q 007520 184 ELNK----------KLEDEHACFEGAVEQLDMVKKLLS 211 (600)
Q Consensus 184 ~l~~----------~l~~e~~~~~~~~~~~~~~~~~~~ 211 (600)
+|.. .||++..+..+...++..+++.+.
T Consensus 336 ~Lee~N~~l~e~~~~LEeel~~~~~~~~qle~~k~qi~ 373 (713)
T PF05622_consen 336 ELEEDNAVLLETKAMLEEELKKARALKSQLEEYKKQIQ 373 (713)
T ss_dssp --------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 5553 344444444444444444444333
No 353
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=78.63 E-value=53 Score=29.97 Aligned_cols=59 Identities=22% Similarity=0.271 Sum_probs=28.5
Q ss_pred HHHhHHHHHHHHHHh-HHHHHHHHhhhccHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhh
Q 007520 16 ESLCRKLETQVDHLT-AEIERKQKLRENDKCELEKLLRECQISYDEAKDNLVTQVELLTAKIEMQQKLR 83 (600)
Q Consensus 16 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (600)
.|=..-||.|++.|. .|.+|+.+.+. +-..++..+.+....|+ +++..-..+...-..|
T Consensus 26 ~~~l~~LEae~q~L~~kE~~r~~~~k~--------~ae~a~~~L~~~~~~~~-~i~e~~~kl~~~~~~r 85 (126)
T PF09403_consen 26 ESELNQLEAEYQQLEQKEEARYNEEKQ--------EAEAAEAELAELKELYA-EIEEKIEKLKQDSKVR 85 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHGGGS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHH-hHHHHHHHHHHhcchh
Confidence 333455666666664 55555544332 22245555555555444 4444444444443333
No 354
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=78.56 E-value=0.66 Score=54.65 Aligned_cols=32 Identities=28% Similarity=0.379 Sum_probs=0.0
Q ss_pred hhhhhHHHHHHHHHHhHhHHHhhhhhHHHHHH
Q 007520 174 TTQLYEKKIAELNKKLEDEHACFEGAVEQLDM 205 (600)
Q Consensus 174 ~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~~~ 205 (600)
.+..+++++.+++..++.=.......+.++..
T Consensus 186 ~~~~l~~e~~~l~~~le~~~~~~~e~e~~~~~ 217 (722)
T PF05557_consen 186 QIQSLESELEELKEQLEELQSELQEAEQQLQE 217 (722)
T ss_dssp --------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555444433344444444
No 355
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=78.55 E-value=51 Score=29.78 Aligned_cols=25 Identities=16% Similarity=0.345 Sum_probs=16.4
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHH
Q 007520 219 GQKEVHELCVKLKETRQLHESAVYE 243 (600)
Q Consensus 219 ~~~e~~~l~~~~~d~~~~~e~~~~e 243 (600)
..++..+|+..+.|+...|..|+.+
T Consensus 94 K~E~veEL~~Dv~DlK~myr~Qi~~ 118 (120)
T PF12325_consen 94 KSEEVEELRADVQDLKEMYREQIDQ 118 (120)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445667777777777777766544
No 356
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.55 E-value=25 Score=40.97 Aligned_cols=134 Identities=13% Similarity=0.141 Sum_probs=79.1
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHhhCCcchHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcCCccHHHHHH
Q 007520 349 LPKILQLLTSEDPDVQIHAVKVVANLAAEDINQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMNEMNQGLIMS 428 (600)
Q Consensus 349 V~~Lv~LL~s~~~~vr~~Aa~aL~nLa~~~~~~~~iv~~G~I~~Lv~lL~~~~~~~v~~~Al~aL~NLa~~~~~r~~I~~ 428 (600)
+|.+...|....+.||+.|..|+..+-.+-. .++- ++-..+-.+|....|+.++++|...|...- ++.
T Consensus 136 ~p~IracleHrhsYVRrNAilaifsIyk~~~---~L~p-DapeLi~~fL~~e~DpsCkRNAFi~L~~~D--~Er------ 203 (948)
T KOG1058|consen 136 MPSIRACLEHRHSYVRRNAILAIFSIYKNFE---HLIP-DAPELIESFLLTEQDPSCKRNAFLMLFTTD--PER------ 203 (948)
T ss_pred HHHHHHHHhCcchhhhhhhheeehhHHhhhh---hhcC-ChHHHHHHHHHhccCchhHHHHHHHHHhcC--HHH------
Confidence 5666677888899999999988887665311 1111 122333356665778888888776665431 111
Q ss_pred hCchhhhHhhhcc--CCCHHHHHHHHHHHHHHhCC-chhHHHHHHcChHHHHHHHHcCCCHHHHHHHHHHHHHhhc
Q 007520 429 RGGGQLLAKTASK--TDDPQTLRMVAGALANLCGN-EKLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFAK 501 (600)
Q Consensus 429 ~G~I~~Lv~lL~~--~~~~~v~~~Aa~aL~nLa~~-~e~r~~i~~~G~i~~Lv~lL~s~~~~v~~~A~~aL~nLa~ 501 (600)
++..|...... +-++..+...+..++..|.. |..+ ...+..+..+|.+.++.|+..|+++|.+|+.
T Consensus 204 --Al~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~~p~~~-----~~~i~~i~~lL~stssaV~fEaa~tlv~lS~ 272 (948)
T KOG1058|consen 204 --ALNYLLSNIDQIPSFNDSLQLVIVELIRKVCLANPAEK-----ARYIRCIYNLLSSTSSAVIFEAAGTLVTLSN 272 (948)
T ss_pred --HHHHHHhhHhhccCccHHHHHHHHHHHHHHHhcCHHHh-----hHHHHHHHHHHhcCCchhhhhhcceEEEccC
Confidence 12222221111 12234444455566666643 3322 2456778888888888888888888888873
No 357
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=78.36 E-value=29 Score=29.93 Aligned_cols=89 Identities=16% Similarity=0.147 Sum_probs=41.1
Q ss_pred HHHHHHhhhHHHHHHHHHhHHHHHHHhhhHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHhhhhhhhhhhhhhHHhhhhh
Q 007520 93 QLRESQISYDESMRNLVTRSEFLEKENAHLELEVEKILGELNHQKDQNNLKREKIVQLEISLKNSKQYEMENSTYQKALA 172 (600)
Q Consensus 93 ~~~~~~~~~~~~~~~l~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~ 172 (600)
|+-++...|.+....+..++ ++.+.++.-+.+|..++.+....--...+....+..+++..+.+-.-|+.....|.
T Consensus 4 EL~~~~~a~~~~~~~~~~k~----~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~~~~Ks~~~i~~L~ 79 (96)
T PF08647_consen 4 ELVSMEQAFKELSEQADKKV----KELTILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNTQLSKSSELIEQLK 79 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 44444444444333333333 44455555555555555444433333333334455555555555555555555555
Q ss_pred hhhhhhHHHHHHH
Q 007520 173 DTTQLYEKKIAEL 185 (600)
Q Consensus 173 ~~~~~~~~~~~~l 185 (600)
++=..|-..+..+
T Consensus 80 ~~E~~~~~~l~~~ 92 (96)
T PF08647_consen 80 ETEKEFVRKLKNL 92 (96)
T ss_pred HHHHHHHHHHHHh
Confidence 5433444444333
No 358
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=78.24 E-value=1.4e+02 Score=34.71 Aligned_cols=85 Identities=28% Similarity=0.310 Sum_probs=41.4
Q ss_pred hHHHHHHHHHHhHHHHHHHHhh-hccHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHH
Q 007520 19 CRKLETQVDHLTAEIERKQKLR-ENDKCELEKLLRECQISYDEAKDNLVTQVELLTAKIEMQQKLRENDKYEFEKQLRES 97 (600)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (600)
.||||.++. .--|...++|.+ +..-.|+++.-..=+..-+ |.|.|.+-+-.---.+-+=-.....||-..
T Consensus 75 ~rrle~e~~-~lre~sl~qkmrLe~qa~Ele~l~~ae~agra--------Eae~Lraala~ae~~R~~lEE~~q~ELee~ 145 (739)
T PF07111_consen 75 LRRLEEEVR-ALRETSLQQKMRLEAQAEELEALARAEKAGRA--------EAEELRAALAGAEVVRKNLEEGSQRELEEA 145 (739)
T ss_pred HHHHHHHHH-HHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhh--------hHHHHHHHHhhHHHHHHhhHHHHHHHHHHH
Confidence 378888884 444555666666 5555666654332222222 333333322211111111113334456666
Q ss_pred HhhhHHHHHHHHHhH
Q 007520 98 QISYDESMRNLVTRS 112 (600)
Q Consensus 98 ~~~~~~~~~~l~~~~ 112 (600)
+..|.+.+.+|..-+
T Consensus 146 q~~Hqeql~~Lt~aH 160 (739)
T PF07111_consen 146 QRLHQEQLSSLTQAH 160 (739)
T ss_pred HHHHHHHHHHHHHHH
Confidence 666666666665554
No 359
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=78.21 E-value=76 Score=33.54 Aligned_cols=49 Identities=16% Similarity=0.234 Sum_probs=21.6
Q ss_pred HHHHHhHHHHHHHhhhHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHhh
Q 007520 106 RNLVTRSEFLEKENAHLELEVEKILGELNHQKDQNNLKREKIVQLEISL 154 (600)
Q Consensus 106 ~~l~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (600)
..+...++...++...++.++..+...|+.-+....+....+..++..+
T Consensus 214 ~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~ 262 (312)
T smart00787 214 KKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKL 262 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444444444444444444433
No 360
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=78.03 E-value=88 Score=35.68 Aligned_cols=124 Identities=19% Similarity=0.187 Sum_probs=72.2
Q ss_pred CHHHHHHHHHHHHHHh----CCchhHHHHHHcChHHHHHHHHc----CCCHHHHHHHHHHHHHhhcCCchhhhhcchhhH
Q 007520 444 DPQTLRMVAGALANLC----GNEKLHTMLEEDGAIKALLAMVR----SGNIDVIAQVARGLANFAKCESRAIVQGQRKGR 515 (600)
Q Consensus 444 ~~~v~~~Aa~aL~nLa----~~~e~r~~i~~~G~i~~Lv~lL~----s~~~~v~~~A~~aL~nLa~~~~~~~~q~~~~~r 515 (600)
.+.+...|+.++++|. .+...+...+-...++.+...|. ..+...+..++.+|+|+...
T Consensus 410 ~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~~------------- 476 (574)
T smart00638 410 QPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNAGHP------------- 476 (574)
T ss_pred cHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhccCCh-------------
Confidence 4445555555666554 33332212222345566666553 35555667788999998632
Q ss_pred HHHHhCCcHHHHHHhhc-C--CCHHHHHHHHHHHHHhhc-CchhHHHHHHcccHHHHHHhhhcC-ChHHHHHHHHHHH-h
Q 007520 516 SHLMEDSALEWLIANSK-T--NSASTRRHVELALCHLAQ-NEDNARDFISRGGAKELVQISIES-SREDIRNLAKKTM-K 589 (600)
Q Consensus 516 ~~l~e~g~l~~Lv~Ll~-s--~~~~v~~~Aa~aL~nLa~-~~~~~~~lv~~G~l~~Lv~ll~~~-~~~~ir~~A~~~L-~ 589 (600)
..++.+..++. . .+..+|..|+++|..++. .+.. +-+.|..+.... ...++|-+|..+| .
T Consensus 477 ------~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~--------v~~~l~~i~~n~~e~~EvRiaA~~~lm~ 542 (574)
T smart00638 477 ------SSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRK--------VQEVLLPIYLNRAEPPEVRMAAVLVLME 542 (574)
T ss_pred ------hHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchH--------HHHHHHHHHcCCCCChHHHHHHHHHHHh
Confidence 24555555544 2 357899999999998864 3332 334555555543 3456888888555 4
Q ss_pred cCccc
Q 007520 590 SNPRL 594 (600)
Q Consensus 590 ~~p~~ 594 (600)
.+|+.
T Consensus 543 t~P~~ 547 (574)
T smart00638 543 TKPSV 547 (574)
T ss_pred cCCCH
Confidence 44765
No 361
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.79 E-value=48 Score=41.62 Aligned_cols=174 Identities=14% Similarity=0.086 Sum_probs=97.9
Q ss_pred HHHHHHHHccCCCHHHHHHHHHHHHHhhcCCccHHHHHH--hCchhhhHhhhccCCCHHHHHHHHHHHHHHhCCchhH--
Q 007520 390 LDALLLLLRTSQNTTILRVASGAIANLAMNEMNQGLIMS--RGGGQLLAKTASKTDDPQTLRMVAGALANLCGNEKLH-- 465 (600)
Q Consensus 390 I~~Lv~lL~~~~~~~v~~~Al~aL~NLa~~~~~r~~I~~--~G~I~~Lv~lL~~~~~~~v~~~Aa~aL~nLa~~~e~r-- 465 (600)
||.|...=- +|+..++. |+.-+||.-..+ -+..+-+ ...+..|+.-|.+ ..=.+++++|.||..|-..++.-
T Consensus 1000 IPrLyRY~y-DP~~~Vq~-aM~sIW~~Li~D-~k~~vd~y~neIl~eLL~~lt~-kewRVReasclAL~dLl~g~~~~~~ 1075 (1702)
T KOG0915|consen 1000 IPRLYRYQY-DPDKKVQD-AMTSIWNALITD-SKKVVDEYLNEILDELLVNLTS-KEWRVREASCLALADLLQGRPFDQV 1075 (1702)
T ss_pred hHHHhhhcc-CCcHHHHH-HHHHHHHHhccC-hHHHHHHHHHHHHHHHHHhccc-hhHHHHHHHHHHHHHHHcCCChHHH
Confidence 444444322 67777666 777778776542 2222222 3355555555532 44489999999999998654332
Q ss_pred -HHHHHcChHHHHHHHHcCCCHHHHHHHHH---HHHHhhcCCchhhhhcchhhHHHHHhCCcHHHHHH-hhcCCCHHHHH
Q 007520 466 -TMLEEDGAIKALLAMVRSGNIDVIAQVAR---GLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIA-NSKTNSASTRR 540 (600)
Q Consensus 466 -~~i~~~G~i~~Lv~lL~s~~~~v~~~A~~---aL~nLa~~~~~~~~q~~~~~r~~l~e~g~l~~Lv~-Ll~s~~~~v~~ 540 (600)
..+- .....++..+++-...||..|-+ +|+-|+..-.+. ....++++.+ ...+|.|+. -+.+.-+.++.
T Consensus 1076 ~e~lp--elw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~--~~~~~~~~~l--~~iLPfLl~~gims~v~evr~ 1149 (1702)
T KOG0915|consen 1076 KEKLP--ELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDV--TNGAKGKEAL--DIILPFLLDEGIMSKVNEVRR 1149 (1702)
T ss_pred HHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc--CCcccHHHHH--HHHHHHHhccCcccchHHHHH
Confidence 2222 34455666666666778877544 444444321110 0112333333 346677766 12377899999
Q ss_pred HHHHHHHHhhcCchhHHHHHHcccHHHHHHhhh
Q 007520 541 HVELALCHLAQNEDNARDFISRGGAKELVQISI 573 (600)
Q Consensus 541 ~Aa~aL~nLa~~~~~~~~lv~~G~l~~Lv~ll~ 573 (600)
.+..++..|+.+.+..-.---...++.|+++..
T Consensus 1150 ~si~tl~dl~Kssg~~lkP~~~~LIp~ll~~~s 1182 (1702)
T KOG0915|consen 1150 FSIGTLMDLAKSSGKELKPHFPKLIPLLLNAYS 1182 (1702)
T ss_pred HHHHHHHHHHHhchhhhcchhhHHHHHHHHHcc
Confidence 999999999876654222222335555555543
No 362
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=77.58 E-value=53 Score=38.91 Aligned_cols=181 Identities=18% Similarity=0.096 Sum_probs=92.7
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHhhC-CcchHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcCCccHHHHHHh
Q 007520 351 KILQLLTSEDPDVQIHAVKVVANLAA-EDINQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMNEMNQGLIMSR 429 (600)
Q Consensus 351 ~Lv~LL~s~~~~vr~~Aa~aL~nLa~-~~~~~~~iv~~G~I~~Lv~lL~~~~~~~v~~~Al~aL~NLa~~~~~r~~I~~~ 429 (600)
.++..++...+.|+......+..+-. ++......+....+|.++.+-. +..-.++......+.-++.... ..+.+.
T Consensus 441 ~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~el~~-d~~wRvr~ail~~ip~la~q~~--~~~~~~ 517 (759)
T KOG0211|consen 441 LLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVELAE-DLLWRVRLAILEYIPQLALQLG--VEFFDE 517 (759)
T ss_pred hhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhhhcc-chhHHHHHHHHHHHHHHHHhhh--hHHhhH
Confidence 33344555556666555544433332 2222222333334454444433 2233444445555555554322 111111
Q ss_pred CchhhhHhhhccC---CCHHHHHHHHHHHHHHhCCchhHHHHHHcChHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchh
Q 007520 430 GGGQLLAKTASKT---DDPQTLRMVAGALANLCGNEKLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFAKCESRA 506 (600)
Q Consensus 430 G~I~~Lv~lL~~~---~~~~v~~~Aa~aL~nLa~~~e~r~~i~~~G~i~~Lv~lL~s~~~~v~~~A~~aL~nLa~~~~~~ 506 (600)
.+..++... ....++..|+..+.-++..-. ......-.++.++.+...++..+|...+.++..|+.-
T Consensus 518 ----~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G--~~w~~~~~i~k~L~~~~q~~y~~R~t~l~si~~la~v---- 587 (759)
T KOG0211|consen 518 ----KLAELLRTWLPDHVYSIREAAARNLPALVETFG--SEWARLEEIPKLLAMDLQDNYLVRMTTLFSIHELAEV---- 587 (759)
T ss_pred ----HHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhC--cchhHHHhhHHHHHHhcCcccchhhHHHHHHHHHHHH----
Confidence 122222111 122556666666655541100 1112223556666666666677777777777766532
Q ss_pred hhhcchhhHHHHHhCCcHHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 007520 507 IVQGQRKGRSHLMEDSALEWLIANSKTNSASTRRHVELALCHLAQ 551 (600)
Q Consensus 507 ~~q~~~~~r~~l~e~g~l~~Lv~Ll~s~~~~v~~~Aa~aL~nLa~ 551 (600)
.-..+.....+|.+..+..+..+.||.+++..|..+..
T Consensus 588 -------~g~ei~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~ 625 (759)
T KOG0211|consen 588 -------LGQEITCEDLLPVFLDLVKDPVANVRINVAKHLPKILK 625 (759)
T ss_pred -------hccHHHHHHHhHHHHHhccCCchhhhhhHHHHHHHHHh
Confidence 11124445688999999999999999999999988743
No 363
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=77.55 E-value=1e+02 Score=32.67 Aligned_cols=91 Identities=21% Similarity=0.265 Sum_probs=60.5
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHh--------hhHHHHHHHHHhHHHHHHHhhhHHHHHHHHHh
Q 007520 60 EAKDNLVTQVELLTAKIEMQQKLRENDKYEFEKQLRESQI--------SYDESMRNLVTRSEFLEKENAHLELEVEKILG 131 (600)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~~~e~~~~~~~~~~~~~ 131 (600)
|..+.+.+||+.|+..|.+=+.+- --|-..+.+++. .+...-..|+.++|.+.+.+.+|+.+++.+.-
T Consensus 79 e~Nk~L~~Ev~~Lrqkl~E~qGD~----KlLR~~la~~r~~~~~~~~~~~~~ere~lV~qLEk~~~q~~qLe~d~qs~lD 154 (319)
T PF09789_consen 79 EQNKKLKEEVEELRQKLNEAQGDI----KLLREKLARQRVGDEGIGARHFPHEREDLVEQLEKLREQIEQLERDLQSLLD 154 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHhchH----HHHHHHHHhhhhhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566778888877764433322 222222222221 23366778999999999999999999999888
Q ss_pred hhhhhhhhhhhHHHHHHHHHHhh
Q 007520 132 ELNHQKDQNNLKREKIVQLEISL 154 (600)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~ 154 (600)
+.+.=...-+.+..|++-|--+|
T Consensus 155 EkeEl~~ERD~yk~K~~RLN~EL 177 (319)
T PF09789_consen 155 EKEELVTERDAYKCKAHRLNHEL 177 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 87777777777788888664444
No 364
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=77.39 E-value=50 Score=36.54 Aligned_cols=142 Identities=15% Similarity=0.095 Sum_probs=85.7
Q ss_pred HHHHHhhCC-CCHHHHHHHHHHHHHhhCCcchHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcCCccHHHHHH
Q 007520 350 PKILQLLTS-EDPDVQIHAVKVVANLAAEDINQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMNEMNQGLIMS 428 (600)
Q Consensus 350 ~~Lv~LL~s-~~~~vr~~Aa~aL~nLa~~~~~~~~iv~~G~I~~Lv~lL~~~~~~~v~~~Al~aL~NLa~~~~~r~~I~~ 428 (600)
..++..|.. .+...+..|..+|.-++.+...+-.=...-+|..++..-.++.+..++..+-.|+.-++.+.+.+.
T Consensus 332 ~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~~---- 407 (516)
T KOG2956|consen 332 LLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQC---- 407 (516)
T ss_pred HHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchhH----
Confidence 344455654 677788888888888776544432212222455566666644444444444455666666644332
Q ss_pred hCchhhhHhhhccCCCHHHHHHHHHHHHHHhCC---chhHHHHHHcChHHHHHHHHcCCCHHHHHHHHHHHHHhhc
Q 007520 429 RGGGQLLAKTASKTDDPQTLRMVAGALANLCGN---EKLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFAK 501 (600)
Q Consensus 429 ~G~I~~Lv~lL~~~~~~~v~~~Aa~aL~nLa~~---~e~r~~i~~~G~i~~Lv~lL~s~~~~v~~~A~~aL~nLa~ 501 (600)
|..+..++.. .|......++..+..|+.. ++.-.. =....|.++....+.+..||..|+.+|..+..
T Consensus 408 ---I~~i~~~Ilt-~D~~~~~~~iKm~Tkl~e~l~~EeL~~l--l~diaP~~iqay~S~SS~VRKtaVfCLVamv~ 477 (516)
T KOG2956|consen 408 ---IVNISPLILT-ADEPRAVAVIKMLTKLFERLSAEELLNL--LPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVN 477 (516)
T ss_pred ---HHHHhhHHhc-CcchHHHHHHHHHHHHHhhcCHHHHHHh--hhhhhhHHHHHhcCchHHhhhhHHHhHHHHHH
Confidence 2333344433 3445555566677777643 222221 23578889999999999999999999998874
No 365
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=77.12 E-value=6.3 Score=39.81 Aligned_cols=85 Identities=16% Similarity=0.159 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHHhCCchhHHHHHHcC-------hHHHHHHHHc-CCCHHHHHHHHHHHHHhhcCCchhhhhcchhhHHH
Q 007520 446 QTLRMVAGALANLCGNEKLHTMLEEDG-------AIKALLAMVR-SGNIDVIAQVARGLANFAKCESRAIVQGQRKGRSH 517 (600)
Q Consensus 446 ~v~~~Aa~aL~nLa~~~e~r~~i~~~G-------~i~~Lv~lL~-s~~~~v~~~A~~aL~nLa~~~~~~~~q~~~~~r~~ 517 (600)
.-++.|+.+|+.||..+.+.+.|...+ .+..|+.++. .+++-.++-|.-.|.+|+..+. ..+|..
T Consensus 139 SPqrlaLEaLcKLsV~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~-------~~~r~i 211 (257)
T PF12031_consen 139 SPQRLALEALCKLSVIENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDE-------AAARAI 211 (257)
T ss_pred CHHHHHHHHHHHhheeccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccH-------HHHHHH
Confidence 457899999999998888877776654 3444555554 6788889999999999997753 345666
Q ss_pred HHhCCcHHHHHHhhcCCCHH
Q 007520 518 LMEDSALEWLIANSKTNSAS 537 (600)
Q Consensus 518 l~e~g~l~~Lv~Ll~s~~~~ 537 (600)
-.+.++|..|+.++.+.+..
T Consensus 212 A~q~~~i~~Li~FiE~a~~~ 231 (257)
T PF12031_consen 212 AMQKPCISHLIAFIEDAEQN 231 (257)
T ss_pred HHhhchHHHHHHHHHHHHHH
Confidence 67789999999988765433
No 366
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.88 E-value=1.9e+02 Score=35.63 Aligned_cols=211 Identities=12% Similarity=0.093 Sum_probs=117.3
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcchHHHHHHc--CCHHHHHHHHccCCCHHHHHHHHHHHHHhhcC-C-ccHHHHHHhCch
Q 007520 357 TSEDPDVQIHAVKVVANLAAEDINQEKIVEE--GGLDALLLLLRTSQNTTILRVASGAIANLAMN-E-MNQGLIMSRGGG 432 (600)
Q Consensus 357 ~s~~~~vr~~Aa~aL~nLa~~~~~~~~iv~~--G~I~~Lv~lL~~~~~~~v~~~Al~aL~NLa~~-~-~~r~~I~~~G~I 432 (600)
++.+..+|..+-.+|..++..+.......+. ..-..|..-++ +.+..++...+.+|..|-.. + ++...+.. .|
T Consensus 664 ~~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~q-s~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k--~I 740 (1176)
T KOG1248|consen 664 NSSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQ-SSSSPAQASRLKCLKRLLKLLSAEHCDLIPK--LI 740 (1176)
T ss_pred ccccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHh-ccchHHHHHHHHHHHHHHHhccHHHHHHHHH--HH
Confidence 3557899999999999988874433222221 12233444444 23344666677777776544 3 44444444 35
Q ss_pred hhhHhhhccCCCHHHHHHHHHHHHHHhCCchhHHHHHHcC------hHHHHHHHHcC----CCHHHHHHHHHHHHHhhcC
Q 007520 433 QLLAKTASKTDDPQTLRMVAGALANLCGNEKLHTMLEEDG------AIKALLAMVRS----GNIDVIAQVARGLANFAKC 502 (600)
Q Consensus 433 ~~Lv~lL~~~~~~~v~~~Aa~aL~nLa~~~e~r~~i~~~G------~i~~Lv~lL~s----~~~~v~~~A~~aL~nLa~~ 502 (600)
+.++-.+ ...+...++.+..+|.+|+. ...+.+.| .|...+..+.. +...+.....-++..+...
T Consensus 741 ~EvIL~~-Ke~n~~aR~~Af~lL~~i~~----i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e 815 (1176)
T KOG1248|consen 741 PEVILSL-KEVNVKARRNAFALLVFIGA----IQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQE 815 (1176)
T ss_pred HHHHHhc-ccccHHHHhhHHHHHHHHHH----HHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHH
Confidence 5544444 34566788888888888873 11222222 44455555432 2222222223333333321
Q ss_pred CchhhhhcchhhHHHHHhC----CcHHHHHHhhcCCCHHHHHHHHHHHHHhhc-CchhHHHHHHcccHHHHHHhhhcCCh
Q 007520 503 ESRAIVQGQRKGRSHLMED----SALEWLIANSKTNSASTRRHVELALCHLAQ-NEDNARDFISRGGAKELVQISIESSR 577 (600)
Q Consensus 503 ~~~~~~q~~~~~r~~l~e~----g~l~~Lv~Ll~s~~~~v~~~Aa~aL~nLa~-~~~~~~~lv~~G~l~~Lv~ll~~~~~ 577 (600)
- .-+++. +.+..+...+.++.+.++..|...+..++. .++.+-.--....++.+..+++..+
T Consensus 816 ~------------~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k- 882 (1176)
T KOG1248|consen 816 F------------KNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHK- 882 (1176)
T ss_pred H------------hccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhh-
Confidence 1 113333 344555556788999999999999999875 3443333333347788888776543
Q ss_pred HHHHHHHHHHH
Q 007520 578 EDIRNLAKKTM 588 (600)
Q Consensus 578 ~~ir~~A~~~L 588 (600)
..++-++..+|
T Consensus 883 ~~~r~Kvr~Ll 893 (1176)
T KOG1248|consen 883 IKVRKKVRLLL 893 (1176)
T ss_pred HHHHHHHHHHH
Confidence 45555555554
No 367
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=76.59 E-value=9.8 Score=43.72 Aligned_cols=128 Identities=12% Similarity=0.003 Sum_probs=95.2
Q ss_pred CCHHHHHHHHHHHHHhhc-CCccHHHHHHhCchhhhHhhhccCCCHHHHHHHHHHHHHHhCC-chhHHHHHHcChHHHHH
Q 007520 401 QNTTILRVASGAIANLAM-NEMNQGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLCGN-EKLHTMLEEDGAIKALL 478 (600)
Q Consensus 401 ~~~~v~~~Al~aL~NLa~-~~~~r~~I~~~G~I~~Lv~lL~~~~~~~v~~~Aa~aL~nLa~~-~e~r~~i~~~G~i~~Lv 478 (600)
.|++++..|..+|..|-. .-..+ . .-+|.|+..+..+++|.++.+|+-.|+.+... ..... ..-..|.
T Consensus 908 sd~~lq~aA~l~L~klMClS~~fc----~-ehlpllIt~mek~p~P~IR~NaVvglgD~~vcfN~~~d-----e~t~yLy 977 (1128)
T COG5098 908 SDEELQVAAYLSLYKLMCLSFEFC----S-EHLPLLITSMEKHPIPRIRANAVVGLGDFLVCFNTTAD-----EHTHYLY 977 (1128)
T ss_pred CCHHHHHHHHHHHHHHHHHhHHHH----H-HHHHHHHHHHhhCCCcceeccceeeccccceehhhhhH-----HHHHHHH
Confidence 678888888888877632 22222 1 14788999998889999999999888877422 11111 1234677
Q ss_pred HHHcCCCHHHHHHHHHHHHHhhcCCchhhhhcchhhHHHHHhCCcHHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 007520 479 AMVRSGNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSKTNSASTRRHVELALCHLAQ 551 (600)
Q Consensus 479 ~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~q~~~~~r~~l~e~g~l~~Lv~Ll~s~~~~v~~~Aa~aL~nLa~ 551 (600)
.-|.+.+..|++.|..++.+|-..+ .+.-.|-++.+...+.++|..+...|-..+..++.
T Consensus 978 rrL~De~~~V~rtclmti~fLilag-------------q~KVKGqlg~ma~~L~deda~Isdmar~fft~~a~ 1037 (1128)
T COG5098 978 RRLGDEDADVRRTCLMTIHFLILAG-------------QLKVKGQLGKMALLLTDEDAEISDMARHFFTQIAK 1037 (1128)
T ss_pred HHhcchhhHHHHHHHHHHHHHHHcc-------------ceeeccchhhhHhhccCCcchHHHHHHHHHHHHHh
Confidence 7788999999999999999997543 14447888999999999999999999888888865
No 368
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=76.45 E-value=1.3e+02 Score=33.37 Aligned_cols=13 Identities=8% Similarity=0.368 Sum_probs=5.1
Q ss_pred hhHHHHHHHHHhh
Q 007520 120 AHLELEVEKILGE 132 (600)
Q Consensus 120 ~~~~~~~~~~~~~ 132 (600)
..+..++.++...
T Consensus 239 ~~~~~~i~~l~~~ 251 (457)
T TIGR01000 239 ATIQQQIDQLQKS 251 (457)
T ss_pred HHHHHHHHHHHHH
Confidence 3334444443333
No 369
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=76.31 E-value=1.6e+02 Score=34.34 Aligned_cols=15 Identities=33% Similarity=0.302 Sum_probs=6.8
Q ss_pred hhhHHHHHHHHHHHh
Q 007520 197 EGAVEQLDMVKKLLS 211 (600)
Q Consensus 197 ~~~~~~~~~~~~~~~ 211 (600)
...+++++.+.+-|.
T Consensus 401 ~~~e~el~~l~~~l~ 415 (650)
T TIGR03185 401 RELEEELAEVDKKIS 415 (650)
T ss_pred HHHHHHHHHHHHHHh
Confidence 344444444444443
No 370
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=75.89 E-value=59 Score=35.50 Aligned_cols=155 Identities=16% Similarity=0.073 Sum_probs=87.9
Q ss_pred HHHHHHccCCCHHHHHHHHHHHHHhhcCCccHHHHHHhCchhhhHh---------hhccCCCHHHHHHHHHHHHHHhCC-
Q 007520 392 ALLLLLRTSQNTTILRVASGAIANLAMNEMNQGLIMSRGGGQLLAK---------TASKTDDPQTLRMVAGALANLCGN- 461 (600)
Q Consensus 392 ~Lv~lL~~~~~~~v~~~Al~aL~NLa~~~~~r~~I~~~G~I~~Lv~---------lL~~~~~~~v~~~Aa~aL~nLa~~- 461 (600)
.++.+|..+.....+..++..++-|+++...-..+....-+..|+. -+....+..+...+..||+|+..+
T Consensus 49 ~i~~Vle~~~p~t~~v~~LetvrILSRdk~~L~~~~~~q~~~~ll~~A~ls~~e~sl~~v~d~~vi~EslKCLcNlvf~S 128 (532)
T KOG4464|consen 49 RIFEVLENGEPLTHRVVCLETVRILSRDKDGLEPLTNDQLCQKLLALAELSSNENSLPTVADMHVIMESLKCLCNLVFHS 128 (532)
T ss_pred HHHHHHhcCCCchhhhhHHHHHHHHhccccccccccchHHHHHHHHHHHhccccCCCCcccchHHHHHHHHHHHHHHhcc
Confidence 4566666555555666777888888876332221111111111111 122234567888999999999855
Q ss_pred chhHHHHHHcChHHHHHHHHc-----CCCHHHHHHHHHHHHHhhcCCchhhhhcchhhHH-HHHhCCcHHHHHHhhcCC-
Q 007520 462 EKLHTMLEEDGAIKALLAMVR-----SGNIDVIAQVARGLANFAKCESRAIVQGQRKGRS-HLMEDSALEWLIANSKTN- 534 (600)
Q Consensus 462 ~e~r~~i~~~G~i~~Lv~lL~-----s~~~~v~~~A~~aL~nLa~~~~~~~~q~~~~~r~-~l~e~g~l~~Lv~Ll~s~- 534 (600)
+..+..+.+...+..++..+. +...++..-=++.|.-|+.-.+ ..|. .+.+.+|++.+-..+.+.
T Consensus 129 q~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~--------~~Rsql~~~l~Gl~~lt~~led~l 200 (532)
T KOG4464|consen 129 QRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALET--------DHRSQLIAELLGLELLTNWLEDKL 200 (532)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhH--------HHHHHHHHHhcccHHHHHHhhccc
Confidence 567777777776666666652 2222334444555555554432 3344 456688999888876542
Q ss_pred --------CH------HHHHHHHHHHHHhhcCch
Q 007520 535 --------SA------STRRHVELALCHLAQNED 554 (600)
Q Consensus 535 --------~~------~v~~~Aa~aL~nLa~~~~ 554 (600)
++ .....+..++.|++.++.
T Consensus 201 gidse~n~~~l~pqe~n~a~EaLK~~FNvt~~~~ 234 (532)
T KOG4464|consen 201 GIDSEINVPPLNPQETNRACEALKVFFNVTCDSD 234 (532)
T ss_pred cCCCCcCCCCCCHHHHHHHHHHHHHHhheeeccc
Confidence 11 234456667777766543
No 371
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=75.86 E-value=1.4e+02 Score=33.57 Aligned_cols=28 Identities=25% Similarity=0.210 Sum_probs=15.1
Q ss_pred hhhhcccchhhHHHHHHHHHHHHHHHHH
Q 007520 212 DYQNSNQGQKEVHELCVKLKETRQLHES 239 (600)
Q Consensus 212 ~~q~~~~~~~e~~~l~~~~~d~~~~~e~ 239 (600)
+.+.+.+..+++.++.+.+.+....++.
T Consensus 345 e~~~vr~~e~eL~el~~~~~~i~~~~~~ 372 (570)
T COG4477 345 ELGSVRKFEKELKELESVLDEILENIEA 372 (570)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3344445555566666666665555553
No 372
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=75.84 E-value=1.7e+02 Score=35.35 Aligned_cols=198 Identities=13% Similarity=0.076 Sum_probs=102.7
Q ss_pred HhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhC-CcchHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcC-Cc
Q 007520 344 CDEVGLPKILQLLTSEDPDVQIHAVKVVANLAA-EDINQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMN-EM 421 (600)
Q Consensus 344 ~e~GgV~~Lv~LL~s~~~~vr~~Aa~aL~nLa~-~~~~~~~iv~~G~I~~Lv~lL~~~~~~~v~~~Al~aL~NLa~~-~~ 421 (600)
++.=-++.++..+.++.--+|..||+++...+. +=.+...+.+ ++......|.++.+..++-.|+.||..+-.+ +.
T Consensus 459 mE~flv~hVfP~f~s~~g~Lrarac~vl~~~~~~df~d~~~l~~--ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~ 536 (1010)
T KOG1991|consen 459 MEYFLVNHVFPEFQSPYGYLRARACWVLSQFSSIDFKDPNNLSE--ALELTHNCLLNDNELPVRVEAALALQSFISNQEQ 536 (1010)
T ss_pred HHHHHHHHhhHhhcCchhHHHHHHHHHHHHHHhccCCChHHHHH--HHHHHHHHhccCCcCchhhHHHHHHHHHHhcchh
Confidence 333335555667778888899999999999884 2222222333 3566667777677778999999999999888 33
Q ss_pred cHHHHHH--hCchhhhHhhhccCCCHHHHHHHHH-HHHHHhCCchhHHHHHH--cChHHHHHHHHcC------CCHHHHH
Q 007520 422 NQGLIMS--RGGGQLLAKTASKTDDPQTLRMVAG-ALANLCGNEKLHTMLEE--DGAIKALLAMVRS------GNIDVIA 490 (600)
Q Consensus 422 ~r~~I~~--~G~I~~Lv~lL~~~~~~~v~~~Aa~-aL~nLa~~~e~r~~i~~--~G~i~~Lv~lL~s------~~~~v~~ 490 (600)
+...+-. .+.+..|+.+....+. +....+.. .++..+. +......+ .......+.++.. .+.+-..
T Consensus 537 ~~e~~~~hvp~~mq~lL~L~ne~En-d~Lt~vme~iV~~fse--ElsPfA~eL~q~La~~F~k~l~~~~~~~~~~ddk~i 613 (1010)
T KOG1991|consen 537 ADEKVSAHVPPIMQELLKLSNEVEN-DDLTNVMEKIVCKFSE--ELSPFAVELCQNLAETFLKVLQTSEDEDESDDDKAI 613 (1010)
T ss_pred hhhhHhhhhhHHHHHHHHHHHhcch-hHHHHHHHHHHHHHHH--hhchhHHHHHHHHHHHHHHHHhccCCCCccchHHHH
Confidence 3333433 2234444455433222 33333332 2332221 11111111 1233445555542 2223344
Q ss_pred HHHHHHHHhhcCCchhhhhcchhhHHHHH--hCCcHHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 007520 491 QVARGLANFAKCESRAIVQGQRKGRSHLM--EDSALEWLIANSKTNSASTRRHVELALCHLAQ 551 (600)
Q Consensus 491 ~A~~aL~nLa~~~~~~~~q~~~~~r~~l~--e~g~l~~Lv~Ll~s~~~~v~~~Aa~aL~nLa~ 551 (600)
.|.|+|..+..-=. .. ......+. +.-++|.+-.++.+.-..+-+.+...+..++.
T Consensus 614 aA~GiL~Ti~Til~--s~---e~~p~vl~~le~~~l~vi~~iL~~~i~dfyeE~~ei~~~~t~ 671 (1010)
T KOG1991|consen 614 AASGILRTISTILL--SL---ENHPEVLKQLEPIVLPVIGFILKNDITDFYEELLEIVSSLTF 671 (1010)
T ss_pred HHHHHHHHHHHHHH--HH---hccHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhh
Confidence 55555555532100 00 01111121 23355565566776666777777777777643
No 373
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.79 E-value=21 Score=39.52 Aligned_cols=150 Identities=15% Similarity=0.071 Sum_probs=84.5
Q ss_pred cCCHHHHHHhh----CCCCHHHHHHHHHHHHHhhCC-cchHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcC-
Q 007520 346 EVGLPKILQLL----TSEDPDVQIHAVKVVANLAAE-DINQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMN- 419 (600)
Q Consensus 346 ~GgV~~Lv~LL----~s~~~~vr~~Aa~aL~nLa~~-~~~~~~iv~~G~I~~Lv~lL~~~~~~~v~~~Al~aL~NLa~~- 419 (600)
.|-+..++..+ .+++..++..|+..|+|.+.. |.-....... .+..++.-|.++.+.+|.-.++.+|.-+...
T Consensus 253 ~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~-~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~ 331 (533)
T KOG2032|consen 253 TGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTT-QLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKA 331 (533)
T ss_pred cccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHH-HHHHHHHHHhcCCccHHHHHHHHHHHHHHHhh
Confidence 34444444333 467788999999999999986 4333222222 4566666666566677777777777766543
Q ss_pred --CccHHHHHHhCchhhhHhhhccCCCHHHHHHHHHHHHHHhC--CchhHHHHHH--cChHHHHHHHHcCCCHHHHHHHH
Q 007520 420 --EMNQGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLCG--NEKLHTMLEE--DGAIKALLAMVRSGNIDVIAQVA 493 (600)
Q Consensus 420 --~~~r~~I~~~G~I~~Lv~lL~~~~~~~v~~~Aa~aL~nLa~--~~e~r~~i~~--~G~i~~Lv~lL~s~~~~v~~~A~ 493 (600)
.+....++. +.-.+..++ .+.+++++.++..++..|+. ....+..+.+ .+...+++-.+.+++|.+.. ||
T Consensus 332 ~~~~l~~~~l~--ialrlR~l~-~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~va~-AC 407 (533)
T KOG2032|consen 332 SNDDLESYLLN--IALRLRTLF-DSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYVAR-AC 407 (533)
T ss_pred hhcchhhhchh--HHHHHHHHH-HhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHHHH-HH
Confidence 222222222 112233444 56778888888877776652 2233444443 12333444455677776544 44
Q ss_pred HHHHHhh
Q 007520 494 RGLANFA 500 (600)
Q Consensus 494 ~aL~nLa 500 (600)
+.....+
T Consensus 408 r~~~~~c 414 (533)
T KOG2032|consen 408 RSELRTC 414 (533)
T ss_pred HHHHHhc
Confidence 4444443
No 374
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=75.78 E-value=2e+02 Score=35.09 Aligned_cols=12 Identities=33% Similarity=0.512 Sum_probs=5.4
Q ss_pred HhHHHHHHHHHH
Q 007520 18 LCRKLETQVDHL 29 (600)
Q Consensus 18 ~~~~~~~~~~~~ 29 (600)
++.+++.+++.+
T Consensus 204 ~~~~~~~e~~~~ 215 (908)
T COG0419 204 LLEALEEELKEL 215 (908)
T ss_pred HHHHHHHHHHHH
Confidence 344444444444
No 375
>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1
Probab=75.77 E-value=14 Score=31.53 Aligned_cols=69 Identities=30% Similarity=0.355 Sum_probs=50.8
Q ss_pred hHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHhhh-------HHHHHHHHHhHHHHHHHhhhHHHHHHHHHhhhhhh
Q 007520 64 NLVTQVELLTAKIEMQQKLRENDKYEFEKQLRESQISY-------DESMRNLVTRSEFLEKENAHLELEVEKILGELNHQ 136 (600)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~~~e~~~~~~~~~~~~~~~~~~ 136 (600)
.+..+|..|+.+|+.|...+ ..||+-+......+ ...++.|-..+.-|+.|..+||..+.+|...+.+|
T Consensus 12 ~LeqeV~~Lq~~L~~E~~~r----~aLe~al~~~~~~~~~~~~~lp~~~keLL~EIA~lE~eV~~LE~~v~~L~~~l~~q 87 (88)
T PF14389_consen 12 ALEQEVAELQKQLQEEQDLR----RALEKALGRSSGSLPSSPSSLPKKAKELLEEIALLEAEVAKLEQKVLSLYRQLFQQ 87 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHhCCCCcccCCccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34449999999999999999 89998887644433 34566777777777777777777777776666554
No 376
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=75.76 E-value=13 Score=37.31 Aligned_cols=135 Identities=12% Similarity=0.074 Sum_probs=87.6
Q ss_pred hhcCchhHHHHHhcCCHHHH-HHhh---C--CCCHHHHHHHHHHHHHhhCCcc--hHHHHHHcCCHHHHHHHHccCCCHH
Q 007520 333 LSGQRATIAKICDEVGLPKI-LQLL---T--SEDPDVQIHAVKVVANLAAEDI--NQEKIVEEGGLDALLLLLRTSQNTT 404 (600)
Q Consensus 333 L~~~~~~~~~i~e~GgV~~L-v~LL---~--s~~~~vr~~Aa~aL~nLa~~~~--~~~~iv~~G~I~~Lv~lL~~~~~~~ 404 (600)
++.++..+..++++-. |.. ..+| + +.-+.+|..+.++++.|..++. ....+....++|.++.++. ..++-
T Consensus 127 laShPetk~~Fl~Ahi-plflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcLrIme-~gSEl 204 (315)
T COG5209 127 LASHPETKKVFLDAHI-PLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCLRIME-LGSEL 204 (315)
T ss_pred HhcCcchheeeeeccc-ceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHHHHHH-hhhHH
Confidence 6678887776666653 322 2444 2 3346789999999999998543 3455567778999999988 43554
Q ss_pred HHHHHHHHHHHhhcCCccHHHHHH----h----CchhhhHhhhccCCCHHHHHHHHHHHHHHhCCchhHHHHH
Q 007520 405 ILRVASGAIANLAMNEMNQGLIMS----R----GGGQLLAKTASKTDDPQTLRMVAGALANLCGNEKLHTMLE 469 (600)
Q Consensus 405 v~~~Al~aL~NLa~~~~~r~~I~~----~----G~I~~Lv~lL~~~~~~~v~~~Aa~aL~nLa~~~e~r~~i~ 469 (600)
-+..|+..+..+..++..-.-|+. - ..+..++..+-+.++....+.++++-..||.++..|..+.
T Consensus 205 SktvaifI~qkil~dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcYlRLsd~p~aR~lL~ 277 (315)
T COG5209 205 SKTVAIFIFQKILGDDVGLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCYLRLSDKPHARALLS 277 (315)
T ss_pred HHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHheeecCCHhHHHHHh
Confidence 566677777777777665444433 1 2233334344344555778888888888888888777654
No 377
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.73 E-value=1.3e+02 Score=33.08 Aligned_cols=30 Identities=23% Similarity=0.337 Sum_probs=20.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007520 222 EVHELCVKLKETRQLHESAVYEVQTLKSEY 251 (600)
Q Consensus 222 e~~~l~~~~~d~~~~~e~~~~el~~l~~~~ 251 (600)
-+|....++-+++..-....-+++++..++
T Consensus 456 ~iH~nc~ei~E~i~~tg~~~revrdlE~qI 485 (521)
T KOG1937|consen 456 RIHLNCMEILEMIRETGALKREVRDLESQI 485 (521)
T ss_pred HHHHHHHHHHHHHHHcchHHHHHHHHHHHH
Confidence 346667777777777777667777777665
No 378
>PF14992 TMCO5: TMCO5 family
Probab=75.65 E-value=75 Score=32.92 Aligned_cols=95 Identities=18% Similarity=0.182 Sum_probs=55.6
Q ss_pred HHHhHHHHHHHHHHhHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHH
Q 007520 16 ESLCRKLETQVDHLTAEIERKQKLRENDKCELEKLLRECQISYDEAKDNLVTQVELLTAKIEMQQKLRENDKYEFEKQLR 95 (600)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (600)
-||-.++|..+.+|++.|.--.... .++...|+..++.+. +.-. . ..+.+|.+..-
T Consensus 3 ~sLn~dle~d~Q~ldE~Nq~lL~ki-----------~~~E~~iq~Le~Eit----~~~~----~-~~~~e~e~~~~---- 58 (280)
T PF14992_consen 3 MSLNMDLEKDEQRLDEANQSLLQKI-----------QEKEGAIQSLEREIT----KMDH----I-ADRSEEEDIIS---- 58 (280)
T ss_pred chhccchHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHH----HHcc----c-cCchhHHhhhh----
Confidence 4677778888888887775433333 366666666666443 1110 0 11111111111
Q ss_pred HHHhhhHHHHHHHHHhHHHHHHHhhhHHHHHHHHHhhhhhhh
Q 007520 96 ESQISYDESMRNLVTRSEFLEKENAHLELEVEKILGELNHQK 137 (600)
Q Consensus 96 ~~~~~~~~~~~~l~~~~~~~~~e~~~~~~~~~~~~~~~~~~~ 137 (600)
.+--..+..|+....-|+++|.++-..+.++-+.+..|-
T Consensus 59 ---~~~e~~l~~le~e~~~LE~~ne~l~~~~~elq~k~~e~~ 97 (280)
T PF14992_consen 59 ---EERETDLQELELETAKLEKENEHLSKSVQELQRKQDEQE 97 (280)
T ss_pred ---hchHHHHHHHHhhhHHHhhhhHhhhhhhhhhhhhhcccc
Confidence 222245667887778899999999888888777764443
No 379
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=75.59 E-value=73 Score=30.23 Aligned_cols=59 Identities=29% Similarity=0.407 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHhhhHHHHHHH
Q 007520 66 VTQVELLTAKIEMQQKLRENDKYEFEKQLRESQISYDESMRNLVTRSEFLEKENAHLELEVEK 128 (600)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~e~~~~~~~~~~ 128 (600)
..+.+.|-.+++.+...+ ...|.++....-.+.+..+.|..+++.|+.+|++|....+.
T Consensus 56 ~~d~e~L~~q~~~ek~~r----~~~e~~l~~~Ed~~~~e~k~L~~~v~~Le~e~r~L~~~~~~ 114 (158)
T PF09744_consen 56 REDNEQLETQYEREKELR----KQAEEELLELEDQWRQERKDLQSQVEQLEEENRQLELKLKN 114 (158)
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 335555666666666666 77788888888888888889999998888888888865544
No 380
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=75.32 E-value=74 Score=36.22 Aligned_cols=187 Identities=15% Similarity=0.158 Sum_probs=92.0
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhhCCcchHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcCCccHHHHHHh
Q 007520 350 PKILQLLTSEDPDVQIHAVKVVANLAAEDINQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMNEMNQGLIMSR 429 (600)
Q Consensus 350 ~~Lv~LL~s~~~~vr~~Aa~aL~nLa~~~~~~~~iv~~G~I~~Lv~lL~~~~~~~v~~~Al~aL~NLa~~~~~r~~I~~~ 429 (600)
|.|-.+|++.-..|.-.++.+++.++... ....++.. .+..|-.+|. ++....+-.|++.|..|++..+.+..++.
T Consensus 267 pfL~~wls~k~emV~lE~Ar~v~~~~~~n-v~~~~~~~-~vs~L~~fL~-s~rv~~rFsA~Riln~lam~~P~kv~vcN- 342 (898)
T COG5240 267 PFLNSWLSDKFEMVFLEAARAVCALSEEN-VGSQFVDQ-TVSSLRTFLK-STRVVLRFSAMRILNQLAMKYPQKVSVCN- 342 (898)
T ss_pred HHHHHHhcCcchhhhHHHHHHHHHHHHhc-cCHHHHHH-HHHHHHHHHh-cchHHHHHHHHHHHHHHHhhCCceeeecC-
Confidence 33336666766778888888888877522 22333333 4555656666 66777888899999999987333322222
Q ss_pred CchhhhHhhhccCCCHHHHHHHHHHHHHHhCCchhHHHHHHcChHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchhhhh
Q 007520 430 GGGQLLAKTASKTDDPQTLRMVAGALANLCGNEKLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFAKCESRAIVQ 509 (600)
Q Consensus 430 G~I~~Lv~lL~~~~~~~v~~~Aa~aL~nLa~~~e~r~~i~~~G~i~~Lv~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~q 509 (600)
+.+-.+..+ .+-.+...|+..|.. .+.++.... .+..+..++++-+.+....+..++..|+..-|.-.--
T Consensus 343 ---~evEsLIsd-~Nr~IstyAITtLLK-TGt~e~idr-----Lv~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k~~s 412 (898)
T COG5240 343 ---KEVESLISD-ENRTISTYAITTLLK-TGTEETIDR-----LVNLIPSFVHDMSDGFKIIAIDALRSLSLLFPSKKLS 412 (898)
T ss_pred ---hhHHHHhhc-ccccchHHHHHHHHH-cCchhhHHH-----HHHHHHHHHHhhccCceEEeHHHHHHHHhhCcHHHHH
Confidence 222333322 222333344433321 233443332 2334455555444444444455555554332221000
Q ss_pred cchhhHHHHHhCCcHH-------HHHHhhcCCCHHHHHHHHHHHHHhhc
Q 007520 510 GQRKGRSHLMEDSALE-------WLIANSKTNSASTRRHVELALCHLAQ 551 (600)
Q Consensus 510 ~~~~~r~~l~e~g~l~-------~Lv~Ll~s~~~~v~~~Aa~aL~nLa~ 551 (600)
--.-.-..+.+.||+. .+..++. .+|..++.|...||..-.
T Consensus 413 ~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~-~~p~skEraLe~LC~fIE 460 (898)
T COG5240 413 YLDFLGSSLLQEGGLEFKKYMVDAISDAME-NDPDSKERALEVLCTFIE 460 (898)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHHHHHh-hCchHHHHHHHHHHHHHh
Confidence 0000112233455543 2222222 356667777776666633
No 381
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=75.26 E-value=9.6 Score=32.70 Aligned_cols=68 Identities=13% Similarity=0.125 Sum_probs=51.7
Q ss_pred hhHhhhccCCCHHHHHHHHHHHHHHhCCchhHHHHHHcChHHHHHHHHcCCCHHHHHHHHHHHHHhhcCC
Q 007520 434 LLAKTASKTDDPQTLRMVAGALANLCGNEKLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFAKCE 503 (600)
Q Consensus 434 ~Lv~lL~~~~~~~v~~~Aa~aL~nLa~~~e~r~~i~~~G~i~~Lv~lL~s~~~~v~~~A~~aL~nLa~~~ 503 (600)
..+..+. ++.+.++..++..|+.|..... ...+--.+++..++..|.++++-|--+|..+|+.|+...
T Consensus 7 ~al~~L~-dp~~PvRa~gL~~L~~Li~~~~-~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~ 74 (92)
T PF10363_consen 7 EALSDLN-DPLPPVRAHGLVLLRKLIESKS-EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRH 74 (92)
T ss_pred HHHHHcc-CCCcchHHHHHHHHHHHHHcCC-cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHC
Confidence 3444553 3667899999999999986655 223334567788888889999999999999999999654
No 382
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=75.24 E-value=85 Score=30.66 Aligned_cols=74 Identities=23% Similarity=0.341 Sum_probs=41.6
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHH---HhhhHHHHHHHHHhHHHHHHHhhhHHHHHHHHHh
Q 007520 57 SYDEAKDNLVTQVELLTAKIEMQQKLRENDKYEFEKQLRES---QISYDESMRNLVTRSEFLEKENAHLELEVEKILG 131 (600)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~e~~~~~~~~~~~~~ 131 (600)
.+.+....+..+++.|+-++++=++..+-- ..++.|+... -.+--|...+|..+...+++|+.+|..+|..|-.
T Consensus 33 ~~ee~na~L~~e~~~L~~q~~s~Qqal~~a-K~l~eEledLk~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqe 109 (193)
T PF14662_consen 33 TAEEGNAQLAEEITDLRKQLKSLQQALQKA-KALEEELEDLKTLAKSLEEENRSLLAQARQLEKEQQSLVAEIETLQE 109 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666777778888888888765544221 1223332221 2233455555666666666666666666665443
No 383
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=75.20 E-value=19 Score=42.66 Aligned_cols=146 Identities=14% Similarity=0.046 Sum_probs=94.9
Q ss_pred CchhhhHhhhccCCCHHHHHHHHHHHHHHhCCchhHHHHHH--cChHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchhh
Q 007520 430 GGGQLLAKTASKTDDPQTLRMVAGALANLCGNEKLHTMLEE--DGAIKALLAMVRSGNIDVIAQVARGLANFAKCESRAI 507 (600)
Q Consensus 430 G~I~~Lv~lL~~~~~~~v~~~Aa~aL~nLa~~~e~r~~i~~--~G~i~~Lv~lL~s~~~~v~~~A~~aL~nLa~~~~~~~ 507 (600)
..+|.|+.... +.+......-..+|.++-++-.. +.+.. ...+|.|++.|.-+|+.++..+..++.-+..-.+.-.
T Consensus 867 ~ivP~l~~~~~-t~~~~~K~~yl~~LshVl~~vP~-~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~ 944 (1030)
T KOG1967|consen 867 DIVPILVSKFE-TAPGSQKHNYLEALSHVLTNVPK-QVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQ 944 (1030)
T ss_pred hhHHHHHHHhc-cCCccchhHHHHHHHHHHhcCCH-HhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccc
Confidence 46777777774 34445556666677777654222 22222 2477888889999999999999999988874432111
Q ss_pred hhcchhhHHHHHhCCcHHHHHHhhcCCC---HHHHHHHHHHHHHhhc-CchhHHHHHHcccHHHHHHhhhcCChHHHHHH
Q 007520 508 VQGQRKGRSHLMEDSALEWLIANSKTNS---ASTRRHVELALCHLAQ-NEDNARDFISRGGAKELVQISIESSREDIRNL 583 (600)
Q Consensus 508 ~q~~~~~r~~l~e~g~l~~Lv~Ll~s~~---~~v~~~Aa~aL~nLa~-~~~~~~~lv~~G~l~~Lv~ll~~~~~~~ir~~ 583 (600)
. -.-.-.+|.++.+-.+.+ ..||..|..+|..|+. -|...-.-.+..++..|..++.++. .-+|..
T Consensus 945 t---------~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkK-RlVR~e 1014 (1030)
T KOG1967|consen 945 T---------EHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKK-RLVRKE 1014 (1030)
T ss_pred h---------HHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHH-HHHHHH
Confidence 0 001346788888766655 6789999999999987 4544334445557777777776544 347777
Q ss_pred HHHH
Q 007520 584 AKKT 587 (600)
Q Consensus 584 A~~~ 587 (600)
|+++
T Consensus 1015 Av~t 1018 (1030)
T KOG1967|consen 1015 AVDT 1018 (1030)
T ss_pred HHHH
Confidence 7654
No 384
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=75.03 E-value=91 Score=30.89 Aligned_cols=68 Identities=19% Similarity=0.166 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHhhhHHHHH
Q 007520 47 LEKLLRECQISYDEAKDNLVTQVELLTAKIEMQQKLRENDKYEFEKQLRESQISYDESMRNLVTRSEFLEKENAHLELEV 126 (600)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~e~~~~~~~~ 126 (600)
|.+...+++..|..+...|. . .....+.++.+....|...+..|..++-..+++...+..++
T Consensus 9 L~~~~~e~~~~i~~L~~q~~-----------~-------~~~~i~~~r~~l~s~y~~q~~~Lq~qLlq~~k~~~~l~~eL 70 (206)
T PF14988_consen 9 LKKKDEEKEKKIEKLWKQYI-----------Q-------QLEEIQRERQELVSRYAKQTSELQDQLLQKEKEQAKLQQEL 70 (206)
T ss_pred HHhhHHHHHHHHHHHHHHHH-----------H-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556677777777666554 2 22455677778888899999999999988888888888888
Q ss_pred HHHHhh
Q 007520 127 EKILGE 132 (600)
Q Consensus 127 ~~~~~~ 132 (600)
..|.--
T Consensus 71 q~l~~~ 76 (206)
T PF14988_consen 71 QALKEF 76 (206)
T ss_pred HHhHHH
Confidence 876543
No 385
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=74.82 E-value=36 Score=42.64 Aligned_cols=106 Identities=11% Similarity=0.092 Sum_probs=55.9
Q ss_pred hhhhHhhhccCCCHHHHHHHHHHHHHHhC-CchhHHHHHHcChHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchhhhhc
Q 007520 432 GQLLAKTASKTDDPQTLRMVAGALANLCG-NEKLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFAKCESRAIVQG 510 (600)
Q Consensus 432 I~~Lv~lL~~~~~~~v~~~Aa~aL~nLa~-~~e~r~~i~~~G~i~~Lv~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~q~ 510 (600)
+..++..|. .+.+.++..|..||.++.. ++.+. ....+-..+-+-+.+.+..|++.|+..++.+..+.++.+-+
T Consensus 818 Lk~Il~~l~-e~~ialRtkAlKclS~ive~Dp~vL---~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~e~~~q- 892 (1692)
T KOG1020|consen 818 LKLILSVLG-ENAIALRTKALKCLSMIVEADPSVL---SRPDVQEAVHGRLNDSSASVREAALDLVGRFVLSIPELIFQ- 892 (1692)
T ss_pred HHHHHHHhc-CchHHHHHHHHHHHHHHHhcChHhh---cCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhccHHHHHH-
Confidence 333444443 2444556666666666642 22211 11112222333344555666666666666665554332111
Q ss_pred chhhHHHHHhCCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCch
Q 007520 511 QRKGRSHLMEDSALEWLIANSKTNSASTRRHVELALCHLAQNED 554 (600)
Q Consensus 511 ~~~~r~~l~e~g~l~~Lv~Ll~s~~~~v~~~Aa~aL~nLa~~~~ 554 (600)
....+..-+.++...||.++..+++.+|...+
T Consensus 893 ------------yY~~i~erIlDtgvsVRKRvIKIlrdic~e~p 924 (1692)
T KOG1020|consen 893 ------------YYDQIIERILDTGVSVRKRVIKILRDICEETP 924 (1692)
T ss_pred ------------HHHHHHhhcCCCchhHHHHHHHHHHHHHHhCC
Confidence 23344455666778899999999999986443
No 386
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=74.76 E-value=20 Score=35.88 Aligned_cols=74 Identities=20% Similarity=0.258 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHhhhHHHHHHHHHhhhhhhhhh
Q 007520 66 VTQVELLTAKIEMQQKLRENDKYEFEKQLRESQISYDESMRNLVTRSEFLEKENAHLELEVEKILGELNHQKDQ 139 (600)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~ 139 (600)
.-.++.....++.+.+......+.+-++|...|...-..+..|+.+|..+-..|-.++.....|..++.+.+..
T Consensus 138 n~~Le~~~~~le~~l~~~k~~ie~vN~~RK~~Q~~~~~~L~~Le~~W~~~v~kn~eie~a~~~Le~ei~~l~~~ 211 (221)
T PF05700_consen 138 NEQLEAMLKRLEKELAKLKKEIEEVNRERKRRQEEAGEELRYLEQRWKELVSKNLEIEVACEELEQEIEQLKRK 211 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44667777777777777777778899999999999999999999999977777777777777777665544433
No 387
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=74.61 E-value=92 Score=30.71 Aligned_cols=91 Identities=19% Similarity=0.285 Sum_probs=48.0
Q ss_pred hhhhHHhhhhhhhhhhhHHHHHHHHHHhHhHHHhhhhhH-------HHHHHHHHHHhhhhhcccchhhHHHHHHHHHHHH
Q 007520 162 MENSTYQKALADTTQLYEKKIAELNKKLEDEHACFEGAV-------EQLDMVKKLLSDYQNSNQGQKEVHELCVKLKETR 234 (600)
Q Consensus 162 ~~n~~~~~~l~~~~~~~~~~~~~l~~~l~~e~~~~~~~~-------~~~~~~~~~~~~~q~~~~~~~e~~~l~~~~~d~~ 234 (600)
..|....+.|.+.+..+.++.....+.+.+=........ .++..|++.+..+++ ...-+..++..+..+.
T Consensus 23 ~~NL~lIksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~k---dK~~L~~~k~rl~~~e 99 (201)
T PF13851_consen 23 LNNLELIKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEK---DKQSLQNLKARLKELE 99 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 678888888888888887777777766665444433333 333334444444332 2223334444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 007520 235 QLHESAVYEVQTLKSEYKNLL 255 (600)
Q Consensus 235 ~~~e~~~~el~~l~~~~~~l~ 255 (600)
.++..+.-|-..|..++..+.
T Consensus 100 k~l~~Lk~e~evL~qr~~kle 120 (201)
T PF13851_consen 100 KELKDLKWEHEVLEQRFEKLE 120 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444444444333444443333
No 388
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=74.47 E-value=1.2e+02 Score=38.40 Aligned_cols=138 Identities=12% Similarity=0.150 Sum_probs=86.5
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHhhC-Ccch-HHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcC-CccHHH
Q 007520 349 LPKILQLLTSEDPDVQIHAVKVVANLAA-EDIN-QEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMN-EMNQGL 425 (600)
Q Consensus 349 V~~Lv~LL~s~~~~vr~~Aa~aL~nLa~-~~~~-~~~iv~~G~I~~Lv~lL~~~~~~~v~~~Al~aL~NLa~~-~~~r~~ 425 (600)
+..++..|..+.+.+|..|.+||.++.. ++.. ...-+..|+... +. +....|++.|+..+...... ++.-..
T Consensus 818 Lk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~R----~~-DssasVREAaldLvGrfvl~~~e~~~q 892 (1692)
T KOG1020|consen 818 LKLILSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQEAVHGR----LN-DSSASVREAALDLVGRFVLSIPELIFQ 892 (1692)
T ss_pred HHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHHHh----hc-cchhHHHHHHHHHHhhhhhccHHHHHH
Confidence 6777788899999999999999999987 4433 233334433332 22 44677999999888866544 555444
Q ss_pred HHHhCchhhhHhhhccCCCHHHHHHHHHHHHHHhCC-chhHHHHHHcChHHHHHHHHc---CCCHHHHHHHHHHHHHhhc
Q 007520 426 IMSRGGGQLLAKTASKTDDPQTLRMVAGALANLCGN-EKLHTMLEEDGAIKALLAMVR---SGNIDVIAQVARGLANFAK 501 (600)
Q Consensus 426 I~~~G~I~~Lv~lL~~~~~~~v~~~Aa~aL~nLa~~-~e~r~~i~~~G~i~~Lv~lL~---s~~~~v~~~A~~aL~nLa~ 501 (600)
+.+. ..-.++ + +...|+..|+..++.+|.. |+.-. .+...+.+++ +....++.-+..++.++..
T Consensus 893 yY~~----i~erIl-D-tgvsVRKRvIKIlrdic~e~pdf~~------i~~~cakmlrRv~DEEg~I~kLv~etf~klWF 960 (1692)
T KOG1020|consen 893 YYDQ----IIERIL-D-TGVSVRKRVIKILRDICEETPDFSK------IVDMCAKMLRRVNDEEGNIKKLVRETFLKLWF 960 (1692)
T ss_pred HHHH----HHhhcC-C-CchhHHHHHHHHHHHHHHhCCChhh------HHHHHHHHHHHhccchhHHHHHHHHHHHHHhc
Confidence 4442 111222 2 4558999999999999843 33322 2223444442 3333477777777777765
Q ss_pred CC
Q 007520 502 CE 503 (600)
Q Consensus 502 ~~ 503 (600)
..
T Consensus 961 ~p 962 (1692)
T KOG1020|consen 961 TP 962 (1692)
T ss_pred cC
Confidence 43
No 389
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=74.33 E-value=1e+02 Score=31.25 Aligned_cols=37 Identities=24% Similarity=0.104 Sum_probs=22.9
Q ss_pred cHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhh
Q 007520 43 DKCELEKLLRECQISYDEAKDNLVTQVELLTAKIEMQQKLR 83 (600)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (600)
+-++++.++++++.+.+- +.||++.+|-+.+-|-.-.
T Consensus 53 qL~q~etrnrdl~t~nqr----l~~E~e~~Kek~e~q~~q~ 89 (333)
T KOG1853|consen 53 QLDQLETRNRDLETRNQR----LTTEQERNKEKQEDQRVQF 89 (333)
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 335666666666655443 4558888887777665544
No 390
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=73.88 E-value=10 Score=44.92 Aligned_cols=146 Identities=18% Similarity=0.121 Sum_probs=95.8
Q ss_pred cccCchHHHhcccCCCCccccchHHHHhhc---CchhHHHHHhc-C-CHHHHHHhhCCCCHHHHHHHHHHHHHhhC-Ccc
Q 007520 306 YTKDYISKGSSRFGAPMSLQKSNPSRELSG---QRATIAKICDE-V-GLPKILQLLTSEDPDVQIHAVKVVANLAA-EDI 379 (600)
Q Consensus 306 ~~~g~i~~Lv~~L~s~~~~~r~~a~~~L~~---~~~~~~~i~e~-G-gV~~Lv~LL~s~~~~vr~~Aa~aL~nLa~-~~~ 379 (600)
|-...+|.+++.+...+..+|..-+..|+. +-+. ..+... . -+|.|+..|+-+|..+|..+..++--+.. .+.
T Consensus 864 fF~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~-~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~t 942 (1030)
T KOG1967|consen 864 FFCDIVPILVSKFETAPGSQKHNYLEALSHVLTNVPK-QVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESET 942 (1030)
T ss_pred HHHhhHHHHHHHhccCCccchhHHHHHHHHHHhcCCH-HhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccc
Confidence 667789999999986666677665554321 2222 212111 1 25666788889999999999888887665 444
Q ss_pred hHHHHHHcCCHHHHHHHHccCCC--HHHHHHHHHHHHHhhcC-CccHHHHHHhCchhhhHhhhccCCCHHHHHHHHHH
Q 007520 380 NQEKIVEEGGLDALLLLLRTSQN--TTILRVASGAIANLAMN-EMNQGLIMSRGGGQLLAKTASKTDDPQTLRMVAGA 454 (600)
Q Consensus 380 ~~~~iv~~G~I~~Lv~lL~~~~~--~~v~~~Al~aL~NLa~~-~~~r~~I~~~G~I~~Lv~lL~~~~~~~v~~~Aa~a 454 (600)
-...-++. .+|.++.+=.+..+ ..++..|+.+|-.|+.. |...-.-....++..|.+.|.+ +.--++..|+.+
T Consensus 943 L~t~~~~T-lvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdD-kKRlVR~eAv~t 1018 (1030)
T KOG1967|consen 943 LQTEHLST-LVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDD-KKRLVRKEAVDT 1018 (1030)
T ss_pred cchHHHhH-HHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCc-HHHHHHHHHHHH
Confidence 44444443 57777776553332 57888999999999984 6655555556688888888843 333567777654
No 391
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=73.62 E-value=22 Score=40.08 Aligned_cols=101 Identities=18% Similarity=0.054 Sum_probs=69.8
Q ss_pred CCHHHHHHHHccCCCHHHHHHHHHHHHHhhcCCccHHHHHHhCchhhhHhhhccCCCHHHHHHHHHHHHHHhCCchhHHH
Q 007520 388 GGLDALLLLLRTSQNTTILRVASGAIANLAMNEMNQGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLCGNEKLHTM 467 (600)
Q Consensus 388 G~I~~Lv~lL~~~~~~~v~~~Al~aL~NLa~~~~~r~~I~~~G~I~~Lv~lL~~~~~~~v~~~Aa~aL~nLa~~~e~r~~ 467 (600)
|++..|+..--++.+..+++.|.-||.-.|..+. ..++..+++|..+-++-|+...+-+|.-.|.+...+.
T Consensus 551 ~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~--------~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~~- 621 (926)
T COG5116 551 GVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDR--------DLLVGTVELLSESHNFHVRAGVAVALGIACAGTGDKV- 621 (926)
T ss_pred hhHhhhheeecccCchHHHHHHHHheeeeEecCc--------chhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccHH-
Confidence 4566666664446677889988888888776633 2566677888776677777777778876665543322
Q ss_pred HHHcChHHHHHHHHcCCCHHHHHHHHHHHHHhhcC
Q 007520 468 LEEDGAIKALLAMVRSGNIDVIAQVARGLANFAKC 502 (600)
Q Consensus 468 i~~~G~i~~Lv~lL~s~~~~v~~~A~~aL~nLa~~ 502 (600)
++..|-.++.+.+.-||..|+-+++.+...
T Consensus 622 -----a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q 651 (926)
T COG5116 622 -----ATDILEALMYDTNDFVRQSAMIAVGMILMQ 651 (926)
T ss_pred -----HHHHHHHHhhCcHHHHHHHHHHHHHHHHhh
Confidence 455666667788888888888888887543
No 392
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=73.58 E-value=1.2e+02 Score=31.64 Aligned_cols=172 Identities=17% Similarity=0.182 Sum_probs=0.0
Q ss_pred HHHHHHhhhchhHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHhhhHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHhhh
Q 007520 76 IEMQQKLRENDKYEFEKQLRESQISYDESMRNLVTRSEFLEKENAHLELEVEKILGELNHQKDQNNLKREKIVQLEISLK 155 (600)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (600)
|+.++..---+.+.+.+.-..-.+.|.+.+..+.++.++|++...-=+..+-.
T Consensus 4 Lq~eia~LrlEidtik~q~qekE~ky~ediei~Kekn~~Lqk~lKLneE~ltk--------------------------- 56 (305)
T PF14915_consen 4 LQDEIAMLRLEIDTIKNQNQEKEKKYLEDIEILKEKNDDLQKSLKLNEETLTK--------------------------- 56 (305)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH---------------------------
Q ss_pred hhhhhhhhhhHHhhhhhhhhhhhHHHHHHHH-------HHhHhHHHhhhhhHHHHHH-HHHHHhhhhhcccchhhHHHHH
Q 007520 156 NSKQYEMENSTYQKALADTTQLYEKKIAELN-------KKLEDEHACFEGAVEQLDM-VKKLLSDYQNSNQGQKEVHELC 227 (600)
Q Consensus 156 ~~~~~~~~n~~~~~~l~~~~~~~~~~~~~l~-------~~l~~e~~~~~~~~~~~~~-~~~~~~~~q~~~~~~~e~~~l~ 227 (600)
|+++|..|+..|+ ..|++|..-.+..+-++.. -=||-+..+.++++++-..-++
T Consensus 57 ------------------Ti~qy~~QLn~L~aENt~L~SkLe~EKq~kerLEtEiES~rsRLaaAi~d~dqsq~skrdle 118 (305)
T PF14915_consen 57 ------------------TIFQYNGQLNVLKAENTMLNSKLEKEKQNKERLETEIESYRSRLAAAIQDHDQSQTSKRDLE 118 (305)
T ss_pred ------------------HHHHHhhhHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHH
Q ss_pred HHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHhhhHHHHhhhhHHHHHHHHhcc
Q 007520 228 VKLKETRQ-----------LHESAVYEVQTLKSEYKNLLEEKETMSDELQAARQRLLVEEKQRKAIEYELVKLKKT 292 (600)
Q Consensus 228 ~~~~d~~~-----------~~e~~~~el~~l~~~~~~l~~~~~~~~~el~~~~~~l~~e~~~~~~le~~~~~l~~~ 292 (600)
-+....+. ....+...-..|+.++++-..-..++..++...+..|.+..-..+.+...+.....+
T Consensus 119 lafqr~rdEw~~lqdkmn~d~S~lkd~ne~LsQqLskaesK~nsLe~elh~trdaLrEKtL~lE~~QrdL~Qtq~q 194 (305)
T PF14915_consen 119 LAFQRARDEWVRLQDKMNSDVSNLKDNNEILSQQLSKAESKFNSLEIELHHTRDALREKTLALESVQRDLSQTQCQ 194 (305)
T ss_pred HHHHHHhhHHHHHHHHhcchHHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 393
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=73.54 E-value=1.8e+02 Score=35.20 Aligned_cols=122 Identities=12% Similarity=0.078 Sum_probs=72.4
Q ss_pred CHHHHHHHHHHHHHhhC----CcchHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcC-CccHHHHHHhCchhh
Q 007520 360 DPDVQIHAVKVVANLAA----EDINQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMN-EMNQGLIMSRGGGQL 434 (600)
Q Consensus 360 ~~~vr~~Aa~aL~nLa~----~~~~~~~iv~~G~I~~Lv~lL~~~~~~~v~~~Al~aL~NLa~~-~~~r~~I~~~G~I~~ 434 (600)
++.-..-|..++++|+. ....+ ..++.-.++.+...++ ++-.-++..||+.+..++.- =.+...+.. ++..
T Consensus 431 ~~rqkdGAL~~vgsl~~~L~K~s~~~-~~mE~flv~hVfP~f~-s~~g~Lrarac~vl~~~~~~df~d~~~l~~--ale~ 506 (1010)
T KOG1991|consen 431 NPRQKDGALRMVGSLASILLKKSPYK-SQMEYFLVNHVFPEFQ-SPYGYLRARACWVLSQFSSIDFKDPNNLSE--ALEL 506 (1010)
T ss_pred ChhhhhhHHHHHHHHHHHHccCCchH-HHHHHHHHHHhhHhhc-CchhHHHHHHHHHHHHHHhccCCChHHHHH--HHHH
Confidence 44555678888888774 22222 2333334556666666 66667888999999999943 122222222 4555
Q ss_pred hHhhhccCCCHHHHHHHHHHHHHHhCCchhH-HHHHH--cChHHHHHHHHcCCC
Q 007520 435 LAKTASKTDDPQTLRMVAGALANLCGNEKLH-TMLEE--DGAIKALLAMVRSGN 485 (600)
Q Consensus 435 Lv~lL~~~~~~~v~~~Aa~aL~nLa~~~e~r-~~i~~--~G~i~~Lv~lL~s~~ 485 (600)
....|.++++-.|+..|+-||..+..+.... ..+.. -+.+..|+.+.+.-+
T Consensus 507 t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~E 560 (1010)
T KOG1991|consen 507 THNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNEVE 560 (1010)
T ss_pred HHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhcc
Confidence 6667765567789999999999886554332 33322 134445566655433
No 394
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=73.47 E-value=1e+02 Score=31.79 Aligned_cols=36 Identities=33% Similarity=0.396 Sum_probs=17.3
Q ss_pred HHhHHHHHHHHHHhHHHHHHHHhhhccHHHHHHHHHHH
Q 007520 17 SLCRKLETQVDHLTAEIERKQKLRENDKCELEKLLREC 54 (600)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 54 (600)
+||--|..|++ + -+.-...-.+.-|-.++|+.+.++
T Consensus 135 ~LydlL~kE~~-l-r~~R~~a~~r~~e~~~iE~~l~~a 170 (267)
T PF10234_consen 135 SLYDLLGKEVE-L-REERQRALARPLELNEIEKALKEA 170 (267)
T ss_pred HHHHHHhchHh-H-HHHHHHHHcCCcCHHHHHHHHHHH
Confidence 45556666662 2 222222333455566666655444
No 395
>PRK10884 SH3 domain-containing protein; Provisional
Probab=73.43 E-value=40 Score=33.45 Aligned_cols=33 Identities=12% Similarity=0.086 Sum_probs=20.8
Q ss_pred HHHHHHHHhHHHHHHHhhhHHHHHHHHHhhhhh
Q 007520 103 ESMRNLVTRSEFLEKENAHLELEVEKILGELNH 135 (600)
Q Consensus 103 ~~~~~l~~~~~~~~~e~~~~~~~~~~~~~~~~~ 135 (600)
+++.++...+..|+.||.+|..++..+..++..
T Consensus 125 ~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~ 157 (206)
T PRK10884 125 QKVAQSDSVINGLKEENQKLKNQLIVAQKKVDA 157 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455566666777777777777776655433
No 396
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=73.30 E-value=50 Score=39.47 Aligned_cols=41 Identities=24% Similarity=0.353 Sum_probs=25.3
Q ss_pred HHHHHHHhHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHhh
Q 007520 23 ETQVDHLTAEIERKQKLRENDKCELEKLLRECQISYDEAKD 63 (600)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 63 (600)
+.++++|+++.+++.+..+.++.++++...+++....+.+.
T Consensus 515 ~~~~~~li~~l~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~ 555 (782)
T PRK00409 515 KEKLNELIASLEELERELEQKAEEAEALLKEAEKLKEELEE 555 (782)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777777777765555555555555544444444
No 397
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=72.90 E-value=1.6e+02 Score=32.83 Aligned_cols=34 Identities=21% Similarity=0.171 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007520 224 HELCVKLKETRQLHESAVYEVQTLKSEYKNLLEE 257 (600)
Q Consensus 224 ~~l~~~~~d~~~~~e~~~~el~~l~~~~~~l~~~ 257 (600)
.++...+.++..+++.+...+..+..++++++..
T Consensus 313 ~~l~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~ 346 (498)
T TIGR03007 313 QQLQIELAEAEAEIASLEARVAELTARIERLESL 346 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555566666665555544455444443333
No 398
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=72.88 E-value=1.9e+02 Score=33.63 Aligned_cols=73 Identities=16% Similarity=0.161 Sum_probs=36.1
Q ss_pred hhhhhhhhHHHHHHHHHHhHhHHHhhhhhHHHHHHH---HHHHhhhhhcccchhhHHHHHHHHHHHHHHHHHHHHH
Q 007520 171 LADTTQLYEKKIAELNKKLEDEHACFEGAVEQLDMV---KKLLSDYQNSNQGQKEVHELCVKLKETRQLHESAVYE 243 (600)
Q Consensus 171 l~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~~~~---~~~~~~~q~~~~~~~e~~~l~~~~~d~~~~~e~~~~e 243 (600)
+....+.+++++..-..+++.++..+.+.++++..+ +...++.-..-....|+..+...+.|=.++.+.++..
T Consensus 184 ~~s~l~~~eke~~~~~~ql~~~~q~~~~~~~~l~e~~~~~qq~a~~~~ql~~~~ele~i~~~~~dqlqel~~l~~a 259 (716)
T KOG4593|consen 184 LHSELQNEEKELDRQHKQLQEENQKIQELQASLEERADHEQQNAELEQQLSLSEELEAINKNMKDQLQELEELERA 259 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666666666666666665555555441 2222222222222334444555555555554444444
No 399
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=72.81 E-value=1.3e+02 Score=34.90 Aligned_cols=174 Identities=14% Similarity=0.123 Sum_probs=102.0
Q ss_pred CHHHHHHHHHHHHHhhcCCccHHHHHH----hCchhhhHhhhccCCCHHHHHHHHHHHHHHhCCchhHHHHHHc-C-hHH
Q 007520 402 NTTILRVASGAIANLAMNEMNQGLIMS----RGGGQLLAKTASKTDDPQTLRMVAGALANLCGNEKLHTMLEED-G-AIK 475 (600)
Q Consensus 402 ~~~v~~~Al~aL~NLa~~~~~r~~I~~----~G~I~~Lv~lL~~~~~~~v~~~Aa~aL~nLa~~~e~r~~i~~~-G-~i~ 475 (600)
+.+..--|+-+|+-+..++..-..+.. ...+..++..+. .++..+..++++|.|+-.++.++..+... . .+.
T Consensus 557 p~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~--~~~an~ll~vR~L~N~f~~~~g~~~~~s~~~~i~~ 634 (745)
T KOG0301|consen 557 PVEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN--ADPANQLLVVRCLANLFSNPAGRELFMSRLESILD 634 (745)
T ss_pred CHHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc--cchhHHHHHHHHHHHhccCHHHHHHHHHHHHHHhh
Confidence 344555577777777766443333333 224445555552 45677788999999999888888776654 1 111
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHhhcCCchhhhhcchhhHHHHHhCCcHHHHHHhhcCC-----CHHHHHHHHHHHHHhh
Q 007520 476 ALLAMVRSGNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSKTN-----SASTRRHVELALCHLA 550 (600)
Q Consensus 476 ~Lv~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~q~~~~~r~~l~e~g~l~~Lv~Ll~s~-----~~~v~~~Aa~aL~nLa 550 (600)
.+...-...+..++...+....|++.. ..+. -.+.++.+.+..++... +-+...+...||.+|+
T Consensus 635 ~~~~~~s~~~knl~ia~atlaln~sv~----l~~~-------~~~~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~ 703 (745)
T KOG0301|consen 635 PVIEASSLSNKNLQIALATLALNYSVL----LIQD-------NEQLEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLM 703 (745)
T ss_pred hhhhhhcccchhHHHHHHHHHHHHHHH----HHhc-------ccccchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhc
Confidence 122221234456666555555555533 1110 11256777777665432 3345667888999999
Q ss_pred cCchhHHHHHHcccHHHHHHhhhcCC-hHHHHHHHHHHH
Q 007520 551 QNEDNARDFISRGGAKELVQISIESS-REDIRNLAKKTM 588 (600)
Q Consensus 551 ~~~~~~~~lv~~G~l~~Lv~ll~~~~-~~~ir~~A~~~L 588 (600)
..+.....+...-.+..++.-+++.. .+...+.|..+|
T Consensus 704 t~~~~~~~~A~~~~v~sia~~~~~~~~~~~~k~~a~~il 742 (745)
T KOG0301|consen 704 TVDASVIQLAKNRSVDSIAKKLKEAVSNPSGKNIARDIL 742 (745)
T ss_pred cccHHHHHHHHhcCHHHHHHHHHHhccCchhhHHHHHHH
Confidence 99888888887666777777766543 333444454433
No 400
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=72.75 E-value=1.6e+02 Score=32.66 Aligned_cols=138 Identities=15% Similarity=0.135 Sum_probs=65.9
Q ss_pred HHHHHHHHHhHHHHHHHhhhHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHhhhhhhhhhhhhhHHhhhhhhhhhhhHHH
Q 007520 102 DESMRNLVTRSEFLEKENAHLELEVEKILGELNHQKDQNNLKREKIVQLEISLKNSKQYEMENSTYQKALADTTQLYEKK 181 (600)
Q Consensus 102 ~~~~~~l~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~ 181 (600)
++-++.|.+||..|..----++.-|.-++.......+.-.-+...+..-|.+++..+-+.++--.....=-=.+.+|+..
T Consensus 294 s~~i~~l~ek~r~l~~D~nk~~~~~~~mk~K~~~~~g~l~kl~~eie~kEeei~~L~~~~d~L~~q~~kq~Is~e~fe~m 373 (622)
T COG5185 294 SQKIKTLREKWRALKSDSNKYENYVNAMKQKSQEWPGKLEKLKSEIELKEEEIKALQSNIDELHKQLRKQGISTEQFELM 373 (622)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCCCHHHHHHH
Confidence 35566667777666655555666666555555555544444444444434443333322221111111111133444443
Q ss_pred HHHHHHHhHhHHHhhhhhHHHHHHHHHHHhhhhhcccchh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007520 182 IAELNKKLEDEHACFEGAVEQLDMVKKLLSDYQNSNQGQK-EVHELCVKLKETRQLHESAVYEVQTLKSE 250 (600)
Q Consensus 182 ~~~l~~~l~~e~~~~~~~~~~~~~~~~~~~~~q~~~~~~~-e~~~l~~~~~d~~~~~e~~~~el~~l~~~ 250 (600)
.++=.+ .-.+|+.++-..+.+.++-.... |.+.--..++++.++|.++..++-...++
T Consensus 374 n~Ere~-----------L~reL~~i~~~~~~L~k~V~~~~leaq~~~~slek~~~~~~sl~~~i~~~~~~ 432 (622)
T COG5185 374 NQEREK-----------LTRELDKINIQSDKLTKSVKSRKLEAQGIFKSLEKTLRQYDSLIQNITRSRSQ 432 (622)
T ss_pred HHHHHH-----------HHHHHHHhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHH
Confidence 333221 22234444444445554444444 44555666777777787777765544433
No 401
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=72.63 E-value=95 Score=32.62 Aligned_cols=116 Identities=19% Similarity=0.196 Sum_probs=74.1
Q ss_pred HHHhhhHHHHHHHHHhHHHHHHHhhhHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHhhhhhhhhh-hhhhHHhhhhh--
Q 007520 96 ESQISYDESMRNLVTRSEFLEKENAHLELEVEKILGELNHQKDQNNLKREKIVQLEISLKNSKQYE-MENSTYQKALA-- 172 (600)
Q Consensus 96 ~~~~~~~~~~~~l~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~n~~~~~~l~-- 172 (600)
+.-.+|-.++..+..+++ .|=...|...+.++...|..|+.......+++..+..+++..+... ..+.+....+.
T Consensus 48 ~~A~~fA~~ld~~~~kl~--~Ms~~ql~~~~~k~~~si~~q~~~i~~l~~~i~~l~~~i~~y~~~~~~~~~~~~~~~~n~ 125 (301)
T PF06120_consen 48 QEAIEFADSLDELKEKLK--EMSSTQLRANIAKAEESIAAQKRAIEDLQKKIDSLKDQIKNYQQQLAEKGITENGYIINH 125 (301)
T ss_pred HHHHHHHHhhHHHHHHHH--hcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchHHHHH
Confidence 345667777778888774 3445667777777777888888888888888888887776443321 11111111111
Q ss_pred -hhhhhhHHHHHHHHHHhHhHHHhhhhhHHHHHHHHHHHhhh
Q 007520 173 -DTTQLYEKKIAELNKKLEDEHACFEGAVEQLDMVKKLLSDY 213 (600)
Q Consensus 173 -~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~~~~~~~~~~~ 213 (600)
.....+..++++++.-|..+..+.+.+......+++++.+.
T Consensus 126 ~~~~~~~t~~la~~t~~L~~~~~~l~q~~~k~~~~q~~l~~~ 167 (301)
T PF06120_consen 126 LMSQADATRKLAEATRELAVAQERLEQMQSKASETQATLNDL 167 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23455667777777778777777777777666666666543
No 402
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=72.13 E-value=76 Score=28.68 Aligned_cols=37 Identities=30% Similarity=0.431 Sum_probs=26.8
Q ss_pred hHHHhHHHHHHHHHHhHHHHHHHHhhhccHHHHHHHH
Q 007520 15 YESLCRKLETQVDHLTAEIERKQKLRENDKCELEKLL 51 (600)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 51 (600)
+.|--|++|.|+..+..++.|-.+.++.=-+||=+.+
T Consensus 21 L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~ 57 (120)
T PF12325_consen 21 LQSQLRRLEGELASLQEELARLEAERDELREEIVKLM 57 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3577899999999999999988888873334444333
No 403
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=72.03 E-value=98 Score=29.91 Aligned_cols=158 Identities=20% Similarity=0.254 Sum_probs=79.9
Q ss_pred HHHHHHhHHHHHHHhhhHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHhhhhhhhhhhhhhHHhhhhhhhhhhhHHHHHH
Q 007520 105 MRNLVTRSEFLEKENAHLELEVEKILGELNHQKDQNNLKREKIVQLEISLKNSKQYEMENSTYQKALADTTQLYEKKIAE 184 (600)
Q Consensus 105 ~~~l~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~ 184 (600)
+++|..|+-.|+=|.++-+..++.|-.+.-+.|.....-. ..-....+...++-.+
T Consensus 6 LK~LQeKIrrLELER~qAe~nl~~LS~et~~yk~vl~~~~------------------------~~~~~~~~e~~~q~~d 61 (178)
T PF14073_consen 6 LKNLQEKIRRLELERSQAEDNLKQLSRETSHYKKVLQSEQ------------------------NERERAHQELSKQNQD 61 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHHHHHHHh------------------------hhhhcccchhhhccHH
Confidence 5678888877777777777777665555433332211000 0000122233334667
Q ss_pred HHHHhHhHHHhhhhhHHHHHHHHHHHhhhhhcccchhhH-HHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 007520 185 LNKKLEDEHACFEGAVEQLDMVKKLLSDYQNSNQGQKEV-HELCVK----LKETRQLHESAVYEVQTLKSEYKNLLEEKE 259 (600)
Q Consensus 185 l~~~l~~e~~~~~~~~~~~~~~~~~~~~~q~~~~~~~e~-~~l~~~----~~d~~~~~e~~~~el~~l~~~~~~l~~~~~ 259 (600)
|...|..--+|+.-.|.+|+.|++++.-..+-...+-|. ..++.. ..++....+ -|..|......|...-.
T Consensus 62 l~~qL~aAEtRCslLEKQLeyMRkmv~~ae~er~~~le~q~~l~~e~~~~~~~~~~kle----kLe~LE~E~~rLt~~Q~ 137 (178)
T PF14073_consen 62 LSSQLSAAETRCSLLEKQLEYMRKMVESAEKERNAVLEQQVSLQRERQQDQSELQAKLE----KLEKLEKEYLRLTATQS 137 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhccchhhHHHHHH----HHHHHHHHHHHHHHHHH
Confidence 888888888888888888888888777443322222211 111111 111111111 11112211222222223
Q ss_pred hchHHHHHHHHhhhHHHHhhhhHHHHHHHHh
Q 007520 260 TMSDELQAARQRLLVEEKQRKAIEYELVKLK 290 (600)
Q Consensus 260 ~~~~el~~~~~~l~~e~~~~~~le~~~~~l~ 290 (600)
.+..-|.-+-..|.+|.++++-+..--+.+.
T Consensus 138 ~ae~Ki~~LE~KL~eEehqRKlvQdkAaqLQ 168 (178)
T PF14073_consen 138 LAETKIKELEEKLQEEEHQRKLVQDKAAQLQ 168 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3355566666778888888887773334444
No 404
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=71.87 E-value=19 Score=37.72 Aligned_cols=103 Identities=16% Similarity=0.109 Sum_probs=62.8
Q ss_pred chhhhHhhhccCCCHHHHHHHHHHHHHHhCCch-hHHHHHHcChHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchhhhh
Q 007520 431 GGQLLAKTASKTDDPQTLRMVAGALANLCGNEK-LHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFAKCESRAIVQ 509 (600)
Q Consensus 431 ~I~~Lv~lL~~~~~~~v~~~Aa~aL~nLa~~~e-~r~~i~~~G~i~~Lv~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~q 509 (600)
.|..+++-+.+ ..+.|.+.||.++..+...-. .... .-.+.+..|+.--..++.-|+..|-.+|..++.+-.
T Consensus 130 vii~vvkslKN-lRS~VsraA~~t~~difs~ln~~i~~-~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vt----- 202 (334)
T KOG2933|consen 130 VIIAVVKSLKN-LRSAVSRAACMTLADIFSSLNNSIDQ-ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVT----- 202 (334)
T ss_pred HHHHHHHHhcC-hHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccC-----
Confidence 45556666643 556888888888888864322 2221 122333333222234556688889999988885521
Q ss_pred cchhhHHHHHhCCcHHHHHHhhcCCCHHHHHHHHHHHHHhh
Q 007520 510 GQRKGRSHLMEDSALEWLIANSKTNSASTRRHVELALCHLA 550 (600)
Q Consensus 510 ~~~~~r~~l~e~g~l~~Lv~Ll~s~~~~v~~~Aa~aL~nLa 550 (600)
-..+++.|+..+.+..+.++..++.++.++.
T Consensus 203 ----------p~~~L~~L~~~~~~~n~r~r~~a~~~~~~~v 233 (334)
T KOG2933|consen 203 ----------PQKLLRKLIPILQHSNPRVRAKAALCFSRCV 233 (334)
T ss_pred ----------hHHHHHHHHHHHhhhchhhhhhhhccccccc
Confidence 1235667777777778888888877776653
No 405
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=71.15 E-value=99 Score=35.27 Aligned_cols=133 Identities=20% Similarity=0.166 Sum_probs=76.0
Q ss_pred HHHHHHHHcc---CCCHHHHHHHHHHHHHhhc----CCccH-HHHHHhCchhhhHhhhcc---CCCHHHHHHHHHHHHHH
Q 007520 390 LDALLLLLRT---SQNTTILRVASGAIANLAM----NEMNQ-GLIMSRGGGQLLAKTASK---TDDPQTLRMVAGALANL 458 (600)
Q Consensus 390 I~~Lv~lL~~---~~~~~v~~~Al~aL~NLa~----~~~~r-~~I~~~G~I~~Lv~lL~~---~~~~~v~~~Aa~aL~nL 458 (600)
+..+..++.. ...+.+...|+.++.+|.. +.+.+ ..++. ..++.|...|.. ..+...+..++.+|+|+
T Consensus 395 l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~-~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~ 473 (574)
T smart00638 395 LKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLE-ELLKYLHELLQQAVSKGDEEEIQLYLKALGNA 473 (574)
T ss_pred HHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHH-HHHHHHHHHHHHHHhcCCchheeeHHHhhhcc
Confidence 4455555542 1344566666666666653 32222 22322 256666665532 23444556667788876
Q ss_pred hCCchhHHHHHHcChHHHHHHHHc---CCCHHHHHHHHHHHHHhhcCCchhhhhcchhhHHHHHhCCcHHHHHHhhcC--
Q 007520 459 CGNEKLHTMLEEDGAIKALLAMVR---SGNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSKT-- 533 (600)
Q Consensus 459 a~~~e~r~~i~~~G~i~~Lv~lL~---s~~~~v~~~A~~aL~nLa~~~~~~~~q~~~~~r~~l~e~g~l~~Lv~Ll~s-- 533 (600)
.... .++.+..++. ..++.+|..|+++|..++...|. -+-+.++.+..+
T Consensus 474 g~~~----------~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~----------------~v~~~l~~i~~n~~ 527 (574)
T smart00638 474 GHPS----------SIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPR----------------KVQEVLLPIYLNRA 527 (574)
T ss_pred CChh----------HHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCch----------------HHHHHHHHHHcCCC
Confidence 5432 3344444443 34567899999999999865432 244556666554
Q ss_pred CCHHHHHHHHHHHHHh
Q 007520 534 NSASTRRHVELALCHL 549 (600)
Q Consensus 534 ~~~~v~~~Aa~aL~nL 549 (600)
.++++|..|..+|...
T Consensus 528 e~~EvRiaA~~~lm~t 543 (574)
T smart00638 528 EPPEVRMAAVLVLMET 543 (574)
T ss_pred CChHHHHHHHHHHHhc
Confidence 4677787777776654
No 406
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=71.11 E-value=68 Score=36.01 Aligned_cols=103 Identities=18% Similarity=0.278 Sum_probs=70.2
Q ss_pred HHHHhhhHHHHHHHHHhHHHHHHHhhhHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHhhhhhhhhhhhhhHHhhhhhhh
Q 007520 95 RESQISYDESMRNLVTRSEFLEKENAHLELEVEKILGELNHQKDQNNLKREKIVQLEISLKNSKQYEMENSTYQKALADT 174 (600)
Q Consensus 95 ~~~~~~~~~~~~~l~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~ 174 (600)
......|+..|.+|..+.-...-...++..|.+.|.+.+...... ...++.+|+..++ .....+.-|..|
T Consensus 412 ~LIk~~Y~~RI~eLt~qlQ~adSKa~~f~~Ec~aL~~rL~~aE~e-------k~~l~eeL~~a~~---~i~~LqDEL~TT 481 (518)
T PF10212_consen 412 QLIKSYYMSRIEELTSQLQHADSKAVHFYAECRALQKRLESAEKE-------KESLEEELKEANQ---NISRLQDELETT 481 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 446789999999999999999989999999999888877543221 1112222333222 122335566778
Q ss_pred hhhhHHHHHHHHHHhHhHHHhhhhhHHHHHHHH
Q 007520 175 TQLYEKKIAELNKKLEDEHACFEGAVEQLDMVK 207 (600)
Q Consensus 175 ~~~~~~~~~~l~~~l~~e~~~~~~~~~~~~~~~ 207 (600)
...||+|+..|+.-|-+=......-.++++.+|
T Consensus 482 r~NYE~QLs~MSEHLasmNeqL~~Q~eeI~~LK 514 (518)
T PF10212_consen 482 RRNYEEQLSMMSEHLASMNEQLAKQREEIQTLK 514 (518)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 888999998888777665555566666676655
No 407
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=70.38 E-value=2.8e+02 Score=34.54 Aligned_cols=45 Identities=11% Similarity=0.138 Sum_probs=20.8
Q ss_pred HHHHHHHhhhhhhhhhhhhhHHhhhhhhhhhhhHHHHHHHHHHhH
Q 007520 146 KIVQLEISLKNSKQYEMENSTYQKALADTTQLYEKKIAELNKKLE 190 (600)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~l~~~l~ 190 (600)
+...+|.++..+.+.+.-......-+.-..+..+.++..|++.+-
T Consensus 188 ~~~~l~~~l~s~~~~~~L~~~q~dl~~~~~~~l~~~~~~Lq~~in 232 (1109)
T PRK10929 188 LVDELELAQLSANNRQELARLRSELAKKRSQQLDAYLQALRNQLN 232 (1109)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444433333333344455555566666665554
No 408
>PF14666 RICTOR_M: Rapamycin-insensitive companion of mTOR, middle domain
Probab=70.20 E-value=1.2e+02 Score=30.43 Aligned_cols=130 Identities=13% Similarity=0.075 Sum_probs=87.3
Q ss_pred HHHHHHHHHHHHHhhcCCccHHHHHHhCchhhhHhhhccC------C------CH-HHHHHHH----HHHHHHhCCchhH
Q 007520 403 TTILRVASGAIANLAMNEMNQGLIMSRGGGQLLAKTASKT------D------DP-QTLRMVA----GALANLCGNEKLH 465 (600)
Q Consensus 403 ~~v~~~Al~aL~NLa~~~~~r~~I~~~G~I~~Lv~lL~~~------~------~~-~v~~~Aa----~aL~nLa~~~e~r 465 (600)
......+|..+..|..+++....+...+.++.++..|... . ++ .+....+ ..|+-|+.++.+.
T Consensus 78 ~~y~~vGc~L~~~Ll~~~eG~~~l~~~~ll~qia~~L~~~d~~~g~~~~~~lfs~~~l~~tl~~~Yf~~IG~lS~~~~Gl 157 (226)
T PF14666_consen 78 QKYVRVGCQLLETLLSSPEGIKYLSESKLLPQIAECLAQVDPMSGITAHDPLFSPQRLSTTLSRGYFLFIGVLSSTPNGL 157 (226)
T ss_pred hHHHHHHHHHHHHHHcCcHHHHHHHHccHHHHHHHHHHHHhhhcCCcccccccCHHHHHhhHHHHHHHHHHHHhCChhHH
Confidence 4455567777888888888777777877888877776432 0 12 1222222 3778889999999
Q ss_pred HHHHHcChHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchhhhhcchhhHHHHHhCCcHHHHHH-hhcCCCHHHHHHHHH
Q 007520 466 TMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIA-NSKTNSASTRRHVEL 544 (600)
Q Consensus 466 ~~i~~~G~i~~Lv~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~q~~~~~r~~l~e~g~l~~Lv~-Ll~s~~~~v~~~Aa~ 544 (600)
..+-+.|....+..++...+.+ .-..-+|.+|-.. ..|....++. .+.+++..+|..|..
T Consensus 158 ~lLe~~~if~~l~~i~~~~~~~--~l~klil~~LDY~-----------------~~~~~R~iLsKaLt~~s~~iRl~aT~ 218 (226)
T PF14666_consen 158 KLLERWNIFTMLYHIFSLSSRD--DLLKLILSSLDYS-----------------VDGHPRIILSKALTSGSESIRLYATK 218 (226)
T ss_pred HHHHHCCHHHHHHHHHccCchH--HHHHHHHhhCCCC-----------------CccHHHHHHHHHHhcCCHHHHHHHHH
Confidence 9999999999999998754331 1222255665322 2344444444 788899999999999
Q ss_pred HHHHhhc
Q 007520 545 ALCHLAQ 551 (600)
Q Consensus 545 aL~nLa~ 551 (600)
.|..+..
T Consensus 219 ~L~~llr 225 (226)
T PF14666_consen 219 HLRVLLR 225 (226)
T ss_pred HHHHHhc
Confidence 9987753
No 409
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=70.16 E-value=29 Score=34.47 Aligned_cols=86 Identities=31% Similarity=0.350 Sum_probs=0.0
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHhhhHHHHHHHHHhhhhhh
Q 007520 57 SYDEAKDNLVTQVELLTAKIEMQQKLRENDKYEFEKQLRESQISYDESMRNLVTRSEFLEKENAHLELEVEKILGELNHQ 136 (600)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~e~~~~~~~~~~~~~~~~~~ 136 (600)
++++.+. -.+.+|-++++.++-. .+|-+|+.+.+.+|-+ +..+++.|+.||++|+...+++..+...=
T Consensus 129 ~~~d~ke----~~ee~kekl~E~~~Ek----eeL~~eleele~e~ee----~~erlk~le~E~s~LeE~~~~l~~ev~~L 196 (290)
T COG4026 129 EYMDLKE----DYEELKEKLEELQKEK----EELLKELEELEAEYEE----VQERLKRLEVENSRLEEMLKKLPGEVYDL 196 (290)
T ss_pred hhhHHHH----HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhchhHHHHH
Q ss_pred hhhhhhHHHHHHHHHHhh
Q 007520 137 KDQNNLKREKIVQLEISL 154 (600)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~ 154 (600)
+..-++...+..-.|..+
T Consensus 197 ~~r~~ELe~~~El~e~~~ 214 (290)
T COG4026 197 KKRWDELEPGVELPEEEL 214 (290)
T ss_pred HHHHHHhcccccchHHHH
No 410
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=69.66 E-value=83 Score=35.93 Aligned_cols=106 Identities=20% Similarity=0.181 Sum_probs=70.0
Q ss_pred ChHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchhhhhcchhhHHHHHhCCcHHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 007520 472 GAIKALLAMVRSGNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSKTNSASTRRHVELALCHLAQ 551 (600)
Q Consensus 472 G~i~~Lv~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~q~~~~~r~~l~e~g~l~~Lv~Ll~s~~~~v~~~Aa~aL~nLa~ 551 (600)
|.+.-++..+.+++..|+..++.+|+-++-+-.+ . ...+-.|.+..|..-+-+..+.||..|+.+|+.+-.
T Consensus 91 ~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~e--------I-De~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe 161 (885)
T COG5218 91 GTFYHLLRGTESKDKKVRKRSLQILALLSDVVRE--------I-DEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQE 161 (885)
T ss_pred HHHHHHHhcccCcchhHHHHHHHHHHHHHHhcch--------H-HHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHh
Confidence 4455566666789999999999999999744111 0 023335677777777777889999999999999854
Q ss_pred CchhHHHHHHcccHHHHHHhhhcCChHHHHHHHHHHHhc
Q 007520 552 NEDNARDFISRGGAKELVQISIESSREDIRNLAKKTMKS 590 (600)
Q Consensus 552 ~~~~~~~lv~~G~l~~Lv~ll~~~~~~~ir~~A~~~L~~ 590 (600)
...+-... .+..|+.+++...+.++|..|.--+..
T Consensus 162 ~~~neen~----~~n~l~~~vqnDPS~EVRr~allni~v 196 (885)
T COG5218 162 MELNEENR----IVNLLKDIVQNDPSDEVRRLALLNISV 196 (885)
T ss_pred ccCChHHH----HHHHHHHHHhcCcHHHHHHHHHHHeee
Confidence 33332222 233566677665556677777644433
No 411
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=69.48 E-value=1e+02 Score=31.17 Aligned_cols=37 Identities=11% Similarity=0.170 Sum_probs=15.7
Q ss_pred HHHhhhHHHHHHHHHhHHHHHHHhhhHHHHHHHHHhh
Q 007520 96 ESQISYDESMRNLVTRSEFLEKENAHLELEVEKILGE 132 (600)
Q Consensus 96 ~~~~~~~~~~~~l~~~~~~~~~e~~~~~~~~~~~~~~ 132 (600)
++-.+|...+..|.....+...|.+..-.-+..|...
T Consensus 32 ~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~i 68 (230)
T PF10146_consen 32 KCLEEYRKEMEELLQERMAHVEELRQINQDINTLENI 68 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555444444433333333333333333333
No 412
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=69.32 E-value=17 Score=26.92 Aligned_cols=31 Identities=32% Similarity=0.423 Sum_probs=24.7
Q ss_pred HHHHHHHhHHHHHHHhhhHHHHHHHHHhhhh
Q 007520 104 SMRNLVTRSEFLEKENAHLELEVEKILGELN 134 (600)
Q Consensus 104 ~~~~l~~~~~~~~~e~~~~~~~~~~~~~~~~ 134 (600)
++..|...++.|.+||..|..|+..|...++
T Consensus 13 ~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl~ 43 (45)
T PF02183_consen 13 SYDSLKAEYDSLKKENEKLRAEVQELKEKLQ 43 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4458888888888899888888888776653
No 413
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=69.22 E-value=1.2e+02 Score=34.78 Aligned_cols=159 Identities=25% Similarity=0.206 Sum_probs=98.1
Q ss_pred HHHHHHHHhHHHHH---HHHhhhccHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHH
Q 007520 22 LETQVDHLTAEIER---KQKLRENDKCELEKLLRECQISYDEAKDNLVTQVELLTAKIEMQQKLRENDKYEFEKQLRESQ 98 (600)
Q Consensus 22 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (600)
||||-=.|-+|+-- ..-+.|+|+.|-|+.++.+++-++|+.+.-+.||..-..+|+.-.|-..+.|..|..++.+.-
T Consensus 172 LETqKlDLmaevSeLKLkltalEkeq~e~E~K~R~se~l~qevn~~kv~e~~~erlqye~klkstk~e~a~L~Eq~~eK~ 251 (861)
T KOG1899|consen 172 LETQKLDLMAEVSELKLKLTALEKEQNETEKKLRLSENLMQEVNQSKVGEVVQERLQYETKLKSTKGEMAPLREQRSEKN 251 (861)
T ss_pred HHHHHhHHHHHHHHhHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHhhhh
Confidence 55554444444432 223448889999999999999999999988889999999999998888888888877777666
Q ss_pred hhhHHHHHHHHHhHHHHHHHhhhHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHhhhhhhhhhhhhhHHhhhhhhhhhhh
Q 007520 99 ISYDESMRNLVTRSEFLEKENAHLELEVEKILGELNHQKDQNNLKREKIVQLEISLKNSKQYEMENSTYQKALADTTQLY 178 (600)
Q Consensus 99 ~~~~~~~~~l~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~ 178 (600)
.+.+-...+|+.+. ..++-+--.-..+|++-++.+-..|....+++..+--=| -.|
T Consensus 252 ~e~~rl~~~lv~~~---~~d~e~~~~rd~~lk~a~eslm~ane~kdr~ie~lr~~l---------------------n~y 307 (861)
T KOG1899|consen 252 DEEMRLLRTLVQRL---MADGEHKSLRDNTLKNALESLMRANEQKDRFIESLRNYL---------------------NNY 307 (861)
T ss_pred hHHHHHHHHHHHHH---hhcccchhhHHHHHHHHHHHHHhhchhhhhHHHHHHHHh---------------------hhh
Confidence 55555555555554 333333333333444454444444444444433211111 111
Q ss_pred HHHHHHHHHHhHhHHHhhhhhHHHHHH
Q 007520 179 EKKIAELNKKLEDEHACFEGAVEQLDM 205 (600)
Q Consensus 179 ~~~~~~l~~~l~~e~~~~~~~~~~~~~ 205 (600)
++.++..-++.++-.+..+-++.++.
T Consensus 308 -~k~~~iv~i~qg~~~~~~s~~e~~p~ 333 (861)
T KOG1899|consen 308 -DKNAQIVRILQGEPSDSMSHSESFPV 333 (861)
T ss_pred -hhhhhhhhhhcCCCcccccccccccc
Confidence 23455666777776666666665555
No 414
>PRK12704 phosphodiesterase; Provisional
Probab=69.07 E-value=2.1e+02 Score=32.53 Aligned_cols=6 Identities=0% Similarity=0.246 Sum_probs=2.2
Q ss_pred HHHHHh
Q 007520 25 QVDHLT 30 (600)
Q Consensus 25 ~~~~~~ 30 (600)
+-+.++
T Consensus 39 eAe~I~ 44 (520)
T PRK12704 39 EAKRIL 44 (520)
T ss_pred HHHHHH
Confidence 333333
No 415
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=68.89 E-value=1.9e+02 Score=31.87 Aligned_cols=44 Identities=25% Similarity=0.228 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHH
Q 007520 51 LRECQISYDEAKDNLVTQVELLTAKIEMQQKLRENDKYEFEKQLR 95 (600)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (600)
+.+.+...+.+++.++ +++.=-.+++.|.....+|.+.+++.+.
T Consensus 54 i~~~~~~~~kL~~~lk-~~e~~i~~~~~ql~~s~~~l~~~~~~I~ 97 (420)
T COG4942 54 IREQQDQRAKLEKQLK-SLETEIASLEAQLIETADDLKKLRKQIA 97 (420)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhHHHHHHhhHH
Confidence 3355555555555443 3333333555566666666666666655
No 416
>KOG1788 consensus Uncharacterized conserved protein [Function unknown]
Probab=68.88 E-value=1.5e+02 Score=36.32 Aligned_cols=233 Identities=20% Similarity=0.177 Sum_probs=129.9
Q ss_pred cCchhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCcchHHHHHHcCCHHHHHHHHccC-----C--C----H
Q 007520 335 GQRATIAKICDEVGLPKILQLLTSEDPDVQIHAVKVVANLAAEDINQEKIVEEGGLDALLLLLRTS-----Q--N----T 403 (600)
Q Consensus 335 ~~~~~~~~i~e~GgV~~Lv~LL~s~~~~vr~~Aa~aL~nLa~~~~~~~~iv~~G~I~~Lv~lL~~~-----~--~----~ 403 (600)
.+.++...+.+..|+..|+.++ -+.+-|.....++.-|...++.+ +...-+-+++..|+++ + + .
T Consensus 672 nnteNqklFreanGvklilpfl--indehRSslLrivscLitvdpkq---vhhqelmalVdtLksgmvt~Isgeqyklhf 746 (2799)
T KOG1788|consen 672 NNTENQKLFREANGVKLILPFL--INDEHRSSLLRIVSCLITVDPKQ---VHHQELMALVDTLKSGMVTRISGEQYKLHF 746 (2799)
T ss_pred ccchhhHHHHhhcCceEEEEee--echHHHHHHHHHHHHHhccCccc---ccHHHHHHHHHHHHhcceeccchhHHHHHH
Confidence 3566667777889988888877 34455555555555555422221 1111244556666531 1 1 1
Q ss_pred HHHHHHHHHHHHhhcC-CccHHHHHHhCchhhhHhhhcc-------CCCHHH--HHHHHHHHH-----HHhCCchhHHHH
Q 007520 404 TILRVASGAIANLAMN-EMNQGLIMSRGGGQLLAKTASK-------TDDPQT--LRMVAGALA-----NLCGNEKLHTML 468 (600)
Q Consensus 404 ~v~~~Al~aL~NLa~~-~~~r~~I~~~G~I~~Lv~lL~~-------~~~~~v--~~~Aa~aL~-----nLa~~~e~r~~i 468 (600)
.+....++++|.+... ...+..+.+.||+..|..+|.. .+..+. ...-...|. .+|.++.++..+
T Consensus 747 sllcdlmGalwrivgvngsaqrvFgeatGFslLlttLhtfqgftelhdesDlcvyiklfkilFrlfTlavcenasNrmkl 826 (2799)
T KOG1788|consen 747 SLLCDLMGALWRIVGVNGSAQRVFGEATGFSLLLTTLHTFQGFTELHDESDLCVYIKLFKILFRLFTLAVCENASNRMKL 826 (2799)
T ss_pred HHHHHHHHHHHHHHccCchheeehhccccHHHHHHHHHHhccchhcCCchhhhhHHHHHHHHHHHHHHHHhhcchhhhhe
Confidence 3455578889988754 7788888999999988877632 111121 111111222 224445554433
Q ss_pred -------------HHcC---------hHHHHHHHH-cC-CCHHHH--HHHHHHHHHhhcCCchhhhh--c-chhhHHHHH
Q 007520 469 -------------EEDG---------AIKALLAMV-RS-GNIDVI--AQVARGLANFAKCESRAIVQ--G-QRKGRSHLM 519 (600)
Q Consensus 469 -------------~~~G---------~i~~Lv~lL-~s-~~~~v~--~~A~~aL~nLa~~~~~~~~q--~-~~~~r~~l~ 519 (600)
...| .|..+..+- .. ..+.+. ..||..+-.+- ++-.+... | -...++.+.
T Consensus 827 htvITsqtftsLLresgllcvnler~viqlllElalevlvppfLtSEsaAcaeVfele-dnifavntPsGqfnpdk~~iy 905 (2799)
T KOG1788|consen 827 HTVITSQTFTSLLRESGLLCVNLERHVIQLLLELALEVLVPPFLTSESAACAEVFELE-DNIFAVNTPSGQFNPDKQKIY 905 (2799)
T ss_pred eeeeeHHHHHHHHHHhccceecchHHHHHHHHHHHHHhhCCchhhhhHHHHHHHhhcc-cceeeeccCCCCcCchHhhhc
Confidence 3334 222222221 11 111111 12222222221 10000000 0 022355677
Q ss_pred hCCcHHHHHHhhcCCCHHHHHHHHHHHHHhhc-CchhHHHHHHcccHHHHHHhhh
Q 007520 520 EDSALEWLIANSKTNSASTRRHVELALCHLAQ-NEDNARDFISRGGAKELVQISI 573 (600)
Q Consensus 520 e~g~l~~Lv~Ll~s~~~~v~~~Aa~aL~nLa~-~~~~~~~lv~~G~l~~Lv~ll~ 573 (600)
..|++..|++.+-...+.++..-...+..++. ++.++.-+...|+++.|++++.
T Consensus 906 nagavRvlirslLlnypK~qlefl~lleSlaRaspfnaelltS~gcvellleIiy 960 (2799)
T KOG1788|consen 906 NAGAVRVLIRSLLLNYPKLQLEFLNLLESLARASPFNAELLTSAGCVELLLEIIY 960 (2799)
T ss_pred ccchhHHHHHHHHhhChHHHHHHHHHHHHHhhcCCCchhhhhcccHHHHHHHHhh
Confidence 89999999998888888999998888888876 6668777778899999999885
No 417
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=68.76 E-value=1.7e+02 Score=31.44 Aligned_cols=17 Identities=47% Similarity=0.550 Sum_probs=9.2
Q ss_pred HHHHHHHHHHhHHHHHH
Q 007520 20 RKLETQVDHLTAEIERK 36 (600)
Q Consensus 20 ~~~~~~~~~~~~~~~~~ 36 (600)
..++.++..+.++.++.
T Consensus 84 ~~l~~~~~~l~a~~~~l 100 (423)
T TIGR01843 84 AELESQVLRLEAEVARL 100 (423)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34555556555555553
No 418
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=68.66 E-value=1.3e+02 Score=30.60 Aligned_cols=104 Identities=25% Similarity=0.378 Sum_probs=45.9
Q ss_pred HHHHHHHHHhHHHHHHHHhhh---ccHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHH
Q 007520 21 KLETQVDHLTAEIERKQKLRE---NDKCELEKLLRECQISYDEAKDNLVTQVELLTAKIEMQQKLRENDKYEFEKQLRES 97 (600)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (600)
-|+..|-++-+++.|-+..+. .-.+.|+..+..++..-..+++.- .+.+..+..|+.++......+..|+.+++
T Consensus 9 Ele~rL~q~eee~~~a~~~L~e~e~~a~~Leek~k~aeeea~~Le~k~-~eaee~~~rL~~~~~~~~eEk~~Le~e~~-- 85 (246)
T PF00769_consen 9 ELEERLRQMEEEMRRAQEALEESEETAEELEEKLKQAEEEAEELEQKR-QEAEEEKQRLEEEAEMQEEEKEQLEQELR-- 85 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH------------HHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 355666666666666666653 111233333333333333333322 24555555555555555555566666666
Q ss_pred HhhhHHHHHHHHHhHHHHHHHhhhHHHHHHHH
Q 007520 98 QISYDESMRNLVTRSEFLEKENAHLELEVEKI 129 (600)
Q Consensus 98 ~~~~~~~~~~l~~~~~~~~~e~~~~~~~~~~~ 129 (600)
.|...+..|....+.-..|..+|..++..-
T Consensus 86 --e~~~~i~~l~ee~~~ke~Ea~~lq~el~~a 115 (246)
T PF00769_consen 86 --EAEAEIARLEEESERKEEEAEELQEELEEA 115 (246)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555443
No 419
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=67.77 E-value=1.7 Score=51.10 Aligned_cols=185 Identities=18% Similarity=0.246 Sum_probs=0.0
Q ss_pred HHHHHHHHhHHHHHHHhhhHHHHHHHHHhhhhhhh----hhhhhHHHHHHHHHHhhhhhhhhhhhhhHHhhhhhh---hh
Q 007520 103 ESMRNLVTRSEFLEKENAHLELEVEKILGELNHQK----DQNNLKREKIVQLEISLKNSKQYEMENSTYQKALAD---TT 175 (600)
Q Consensus 103 ~~~~~l~~~~~~~~~e~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~---~~ 175 (600)
.....|..++..|..|+..|..|...+...+++-. +.+.....+..++-..+...+ .|+......+.| ..
T Consensus 193 q~~~el~~~i~~L~~e~~~L~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ql~~L~---~el~~~e~~~~d~~~~~ 269 (713)
T PF05622_consen 193 QRCHELEKQISDLQEEKESLQSENEELQERLSQLEGSSEEPSQHLSVELADLRAQLRRLR---EELERLEEQRDDLKIEL 269 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHhHHHhhhhhhhhhcccCCCCCCCCCcchHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 33445555566666666666666666655554322 111222222233333333322 233222222222 34
Q ss_pred hhhHHHHHHHHHHh---HhHHHhhhhhHHHHHH-------HHHHHhhhhhcccchhhHHHHHHHHHHHHHHHH-------
Q 007520 176 QLYEKKIAELNKKL---EDEHACFEGAVEQLDM-------VKKLLSDYQNSNQGQKEVHELCVKLKETRQLHE------- 238 (600)
Q Consensus 176 ~~~~~~~~~l~~~l---~~e~~~~~~~~~~~~~-------~~~~~~~~q~~~~~~~e~~~l~~~~~d~~~~~e------- 238 (600)
...++++.+|+... ...+....+..+++|. +.++-+.+++|.+...|...|+..+..+.....
T Consensus 270 e~le~ei~~L~q~~~eL~~~A~~a~~LrDElD~lR~~a~r~~klE~~ve~YKkKLed~~~lk~qvk~Lee~N~~l~e~~~ 349 (713)
T PF05622_consen 270 EELEKEIDELRQENEELQAEAREARALRDELDELREKADRADKLENEVEKYKKKLEDLEDLKRQVKELEEDNAVLLETKA 349 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666777776443 2333444555666666 667778888888888888777777766666554
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHhhhHHHHhhhhHHHHHHHHhccCC
Q 007520 239 SAVYEVQTLKSEYKNLLEEKETMSDELQAARQRLLVEEKQRKAIEYELVKLKKTAP 294 (600)
Q Consensus 239 ~~~~el~~l~~~~~~l~~~~~~~~~el~~~~~~l~~e~~~~~~le~~~~~l~~~l~ 294 (600)
.+..+++.. ..++.+.......+..+...+.++......+..++..+...+.
T Consensus 350 ~LEeel~~~----~~~~~qle~~k~qi~eLe~~l~~~~~~~~~l~~e~~~L~ek~~ 401 (713)
T PF05622_consen 350 MLEEELKKA----RALKSQLEEYKKQIQELEQKLSEESRRADKLEFENKQLEEKLE 401 (713)
T ss_dssp --------------------------------------------------------
T ss_pred HHHHHHHHh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344442221 1233333344445555555555555555555555555554443
No 420
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=67.77 E-value=40 Score=35.38 Aligned_cols=139 Identities=16% Similarity=0.192 Sum_probs=86.6
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHhhC-CcchHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcC-CccHHHH
Q 007520 349 LPKILQLLTSEDPDVQIHAVKVVANLAA-EDINQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMN-EMNQGLI 426 (600)
Q Consensus 349 V~~Lv~LL~s~~~~vr~~Aa~aL~nLa~-~~~~~~~iv~~G~I~~Lv~lL~~~~~~~v~~~Al~aL~NLa~~-~~~r~~I 426 (600)
+...+..|.+.+.+....+...|.-|+. +++........ .|..++.-++ +....+.+.|+.++..+... ......
T Consensus 90 l~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~~-vii~vvkslK-NlRS~VsraA~~t~~difs~ln~~i~~- 166 (334)
T KOG2933|consen 90 LKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLHE-VIIAVVKSLK-NLRSAVSRAACMTLADIFSSLNNSIDQ- 166 (334)
T ss_pred HHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHHH-HHHHHHHHhc-ChHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 5566778888888888888888888887 44333333332 5666777777 55667888999999998876 222222
Q ss_pred HHhCchhhhHhh-hcc-CCCH-HHHHHHHHHHHHHhCCchhHHHHHHcChHHHHHHHHcCCCHHHHHHHHHHHHHhh
Q 007520 427 MSRGGGQLLAKT-ASK-TDDP-QTLRMVAGALANLCGNEKLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFA 500 (600)
Q Consensus 427 ~~~G~I~~Lv~l-L~~-~~~~-~v~~~Aa~aL~nLa~~~e~r~~i~~~G~i~~Lv~lL~s~~~~v~~~A~~aL~nLa 500 (600)
....++.. +.. +.+. -++..|-.+|-.+.....-.. +++.|+..+...++.++..++.++.++.
T Consensus 167 ----~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~~------~L~~L~~~~~~~n~r~r~~a~~~~~~~v 233 (334)
T KOG2933|consen 167 ----ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQK------LLRKLIPILQHSNPRVRAKAALCFSRCV 233 (334)
T ss_pred ----HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccChHH------HHHHHHHHHhhhchhhhhhhhccccccc
Confidence 12233322 222 2222 356666668877765433222 4566777777888888877766665544
No 421
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=67.53 E-value=56 Score=38.48 Aligned_cols=185 Identities=12% Similarity=0.075 Sum_probs=107.1
Q ss_pred cCchhHHHHHhcCCHHHHHHhhC-CCCHHHHHHHHHHHHHhhCCcchHHHHHHcCCHH--HHHHHHccCCCHHHHHHHHH
Q 007520 335 GQRATIAKICDEVGLPKILQLLT-SEDPDVQIHAVKVVANLAAEDINQEKIVEEGGLD--ALLLLLRTSQNTTILRVASG 411 (600)
Q Consensus 335 ~~~~~~~~i~e~GgV~~Lv~LL~-s~~~~vr~~Aa~aL~nLa~~~~~~~~iv~~G~I~--~Lv~lL~~~~~~~v~~~Al~ 411 (600)
.++.....++..||+..++..+. -...+.+..+.+.+.|++...+.+..+.....+. .+-.++....+.+....|++
T Consensus 501 ~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~w~~~ersY~~~s 580 (699)
T KOG3665|consen 501 ENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFIDFSVFKVLLNKWDSIERSYNAAS 580 (699)
T ss_pred CCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcchhhHHHHHHH
Confidence 46667788999999999998886 4567889999999999997544332222111122 22234443445477888999
Q ss_pred HHHHhhcCCccHHHHHHhCchhhhHhhhccCCCHHHHHHHHHHHHHHhCCchhHHHHHHcChHHH-HHHHHc-CCCHHHH
Q 007520 412 AIANLAMNEMNQGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLCGNEKLHTMLEEDGAIKA-LLAMVR-SGNIDVI 489 (600)
Q Consensus 412 aL~NLa~~~~~r~~I~~~G~I~~Lv~lL~~~~~~~v~~~Aa~aL~nLa~~~e~r~~i~~~G~i~~-Lv~lL~-s~~~~v~ 489 (600)
.|+.+..+.+. ....+..+..-.++ ..++... +.....+.-...+.+ +..++. +..++.+
T Consensus 581 iLa~ll~~~~~---~~~~~~r~~~~~~l------------~e~i~~~---~~~~~~~~~~~~f~~~~~~il~~s~~~g~~ 642 (699)
T KOG3665|consen 581 ILALLLSDSEK---TTECVFRNSVNELL------------VEAISRW---LTSEIRVINDRSFFPRILRILRLSKSDGSQ 642 (699)
T ss_pred HHHHHHhCCCc---CccccchHHHHHHH------------HHHhhcc---CccceeehhhhhcchhHHHHhcccCCCchH
Confidence 99988876332 12222222222221 1111111 111111111222222 444443 6677889
Q ss_pred HHHHHHHHHhhcCCchhhhhcchhhHHHHHhCCcHHHHHHhh-cCCCHHHHHHHHHH
Q 007520 490 AQVARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANS-KTNSASTRRHVELA 545 (600)
Q Consensus 490 ~~A~~aL~nLa~~~~~~~~q~~~~~r~~l~e~g~l~~Lv~Ll-~s~~~~v~~~Aa~a 545 (600)
..|++++.+++... +++...+...|+++.+...- .+....++..+...
T Consensus 643 lWal~ti~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 691 (699)
T KOG3665|consen 643 LWALWTIKNVLEQN--------KEYCKLVRESNGFELIENIRVLSEVVDVKEEAVLV 691 (699)
T ss_pred HHHHHHHHHHHHcC--------hhhhhhhHhccchhhhhhcchhHHHHHHHHHHHHH
Confidence 99999999999765 34666677888988887753 32334444444333
No 422
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=66.66 E-value=52 Score=31.98 Aligned_cols=110 Identities=19% Similarity=0.153 Sum_probs=69.9
Q ss_pred chhhhHhhhccCCCHHHHHHHHHHHHHHhCCchhHHHHHH-c--------------Ch-H----HHHHHHHc-CCCHHHH
Q 007520 431 GGQLLAKTASKTDDPQTLRMVAGALANLCGNEKLHTMLEE-D--------------GA-I----KALLAMVR-SGNIDVI 489 (600)
Q Consensus 431 ~I~~Lv~lL~~~~~~~v~~~Aa~aL~nLa~~~e~r~~i~~-~--------------G~-i----~~Lv~lL~-s~~~~v~ 489 (600)
.-+.|+.++..++++.++..|+.+|..|-......-..++ . |. + ..|+..|. ..++.+.
T Consensus 40 ~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l 119 (182)
T PF13251_consen 40 ATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEESKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVL 119 (182)
T ss_pred CCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHH
Confidence 4555666665667889999999999888633211111111 0 10 0 12444454 5678888
Q ss_pred HHHHHHHHHhhcCCchhhhhcchhhHHHHHhCCcHHH----HHHhhcCCCHHHHHHHHHHHHHhhc
Q 007520 490 AQVARGLANFAKCESRAIVQGQRKGRSHLMEDSALEW----LIANSKTNSASTRRHVELALCHLAQ 551 (600)
Q Consensus 490 ~~A~~aL~nLa~~~~~~~~q~~~~~r~~l~e~g~l~~----Lv~Ll~s~~~~v~~~Aa~aL~nLa~ 551 (600)
...+.+|+.|....|=.+. ..|.++. +..++.+.|..++..+..++..+..
T Consensus 120 ~q~lK~la~Lv~~tPY~rL-----------~~~ll~~~v~~v~~~l~~~d~~v~v~~l~~~~~l~s 174 (182)
T PF13251_consen 120 TQLLKCLAVLVQATPYHRL-----------PPGLLTEVVTQVRPLLRHRDPNVRVAALSCLGALLS 174 (182)
T ss_pred HHHHHHHHHHHccCChhhc-----------CHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc
Confidence 8999999999876542211 2344444 4446777899999999999988854
No 423
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=66.55 E-value=2.3e+02 Score=32.06 Aligned_cols=170 Identities=21% Similarity=0.179 Sum_probs=81.0
Q ss_pred HHHhHHHHHHHHHHhHHHHHHHHhhh----------ccHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhc
Q 007520 16 ESLCRKLETQVDHLTAEIERKQKLRE----------NDKCELEKLLRECQISYDEAKDNLVTQVELLTAKIEMQQKLREN 85 (600)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (600)
+|+--|.|||...|++--|+-+|+.| +++.+.++-..-|+..- -....-..-|++||- +.
T Consensus 253 ~~~e~riEtqkqtl~ardesIkkLlEmLq~kgmg~~~~~~df~~~~~~a~~~~-h~r~~~er~IerLke-----qr---- 322 (654)
T KOG4809|consen 253 PSGEQRIETQKQTLDARDESIKKLLEMLQRKGMGRSNQPRDFTKANLSAHEMA-HMRMKVERIIERLKE-----QR---- 322 (654)
T ss_pred chHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcccccchhhHHHHHHhHHHHH-hhhchHHHHHHHhcc-----hh----
Confidence 34456899999999999999888875 23333333211111000 000000012233322 11
Q ss_pred hhHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHhhhHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHhhhhhhhhh-hhh
Q 007520 86 DKYEFEKQLRESQISYDESMRNLVTRSEFLEKENAHLELEVEKILGELNHQKDQNNLKREKIVQLEISLKNSKQYE-MEN 164 (600)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~n 164 (600)
..-|+|+.+--.+|....+-|.+++..|+.+.+.-+..+.+++...-+=++..--...+...+||-|.+-+..- .-|
T Consensus 323 --~rderE~~EeIe~~~ke~kdLkEkv~~lq~~l~eke~sl~dlkehassLas~glk~ds~Lk~leIalEqkkEec~kme 400 (654)
T KOG4809|consen 323 --ERDERERLEEIESFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIALEQKKEECSKME 400 (654)
T ss_pred --hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 22345555555566666666777776666666666666666655553333332222333344444444333222 222
Q ss_pred hHHhhhhhh-hhhhhHHHHHHHHHHhHhHHHhhh
Q 007520 165 STYQKALAD-TTQLYEKKIAELNKKLEDEHACFE 197 (600)
Q Consensus 165 ~~~~~~l~~-~~~~~~~~~~~l~~~l~~e~~~~~ 197 (600)
+...++=+- --..+..+.+|+.+.|+.|++.+.
T Consensus 401 ~qLkkAh~~~ddar~~pe~~d~i~~le~e~~~y~ 434 (654)
T KOG4809|consen 401 AQLKKAHNIEDDARMNPEFADQIKQLEKEASYYR 434 (654)
T ss_pred HHHHHHHHhhHhhhcChhhHHHHHHHHHHHHHHH
Confidence 222222111 112334455666666666666543
No 424
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=66.54 E-value=1.3e+02 Score=32.50 Aligned_cols=97 Identities=26% Similarity=0.288 Sum_probs=52.3
Q ss_pred HHHhHHHHHHHHHHhHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHH
Q 007520 16 ESLCRKLETQVDHLTAEIERKQKLRENDKCELEKLLRECQISYDEAKDNLVTQVELLTAKIEMQQKLRENDKYEFEKQLR 95 (600)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (600)
+.|.|+|-.-++....||.+-+--. .|+|+-+.-||..-..+++ ++.-++ .
T Consensus 284 eelar~Lr~~I~~VarENs~LqrQK----le~e~~l~a~qeakek~~K---------------EAqare----------a 334 (442)
T PF06637_consen 284 EELARSLRAGIERVARENSDLQRQK----LEAEQGLQASQEAKEKAGK---------------EAQARE----------A 334 (442)
T ss_pred HHHHHHHhhhHHHHHHhhhHHHHHH----HHHHHHHHHHHHHHHHHHH---------------HHHHHH----------H
Confidence 4566666666666666655544332 4555555555544444444 111111 1
Q ss_pred HHHhhhHHHHH-HHHHhHHHHHHHhhhHHHHHHHHHhhhhhhhhhhhh
Q 007520 96 ESQISYDESMR-NLVTRSEFLEKENAHLELEVEKILGELNHQKDQNNL 142 (600)
Q Consensus 96 ~~~~~~~~~~~-~l~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 142 (600)
+.|-+..-+.. -|++| -.|+||...|.-|++..+.++.|.+.....
T Consensus 335 klqaec~rQ~qlaLEEK-aaLrkerd~L~keLeekkreleql~~q~~v 381 (442)
T PF06637_consen 335 KLQAECARQTQLALEEK-AALRKERDSLAKELEEKKRELEQLKMQLAV 381 (442)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 22333333322 24444 578888888888888877777777665544
No 425
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=66.44 E-value=1.3e+02 Score=28.99 Aligned_cols=12 Identities=17% Similarity=0.254 Sum_probs=4.3
Q ss_pred HHHHHHhHHHHH
Q 007520 105 MRNLVTRSEFLE 116 (600)
Q Consensus 105 ~~~l~~~~~~~~ 116 (600)
++.+...+..+.
T Consensus 139 ~~~~~~e~~~l~ 150 (191)
T PF04156_consen 139 IKELEKEIRELQ 150 (191)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 426
>PRK10780 periplasmic chaperone; Provisional
Probab=66.39 E-value=74 Score=30.14 Aligned_cols=39 Identities=18% Similarity=0.305 Sum_probs=23.2
Q ss_pred ccchhhhhhhhc-hHHHhHHHHHHHHHHhHHHHHHHHhhh
Q 007520 3 VVNMVKLKEEFD-YESLCRKLETQVDHLTAEIERKQKLRE 41 (600)
Q Consensus 3 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 41 (600)
++||-++=.+.+ |+....+||.+.+....|.++..+.+.
T Consensus 28 ~Vd~q~il~~~p~~k~~~~~le~~~~~~q~el~~~~~elq 67 (165)
T PRK10780 28 IVNMGSIFQQVPQRTGVSKQLENEFKGRASELQRMETDLQ 67 (165)
T ss_pred EeeHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555554444 566666676666666666666555554
No 427
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=66.37 E-value=1.5e+02 Score=29.78 Aligned_cols=137 Identities=15% Similarity=0.142 Sum_probs=81.4
Q ss_pred HHHHHHHHccCCCHHHHHHHHHHHHHhhcCC-ccHHHHHHhCchhhhHhhhccCCCHHHHHHHHHHHHHHhC-CchhHHH
Q 007520 390 LDALLLLLRTSQNTTILRVASGAIANLAMNE-MNQGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLCG-NEKLHTM 467 (600)
Q Consensus 390 I~~Lv~lL~~~~~~~v~~~Al~aL~NLa~~~-~~r~~I~~~G~I~~Lv~lL~~~~~~~v~~~Aa~aL~nLa~-~~e~r~~ 467 (600)
++.|+.-+....++.+....+.+|..++.++ .+...+++ .|..+. ..++......+...+..+-. ++..-
T Consensus 2 l~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~~~~~~v~~-----~L~~L~-~~~~~~~~~~~~rLl~~lw~~~~r~f-- 73 (234)
T PF12530_consen 2 LPLLLYKLGKISDPELQLPLLEALPSLACHKNVCVPPVLQ-----TLVSLV-EQGSLELRYVALRLLTLLWKANDRHF-- 73 (234)
T ss_pred hHHHHHHhcCCCChHHHHHHHHHHHHHhccCccchhHHHH-----HHHHHH-cCCchhHHHHHHHHHHHHHHhCchHH--
Confidence 4556665666788889999999999999987 55555443 344444 22343443344445554432 22111
Q ss_pred HHHcChHHHHHHHH--c--------CCCHHHHHHHHHHHHHhhcCCchhhhhcchhhHHHHHhCCcHHHHHHhh-cCCCH
Q 007520 468 LEEDGAIKALLAMV--R--------SGNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANS-KTNSA 536 (600)
Q Consensus 468 i~~~G~i~~Lv~lL--~--------s~~~~v~~~A~~aL~nLa~~~~~~~~q~~~~~r~~l~e~g~l~~Lv~Ll-~s~~~ 536 (600)
+.+..++..+ + +.........+.++..++...|+... ..++.|...+ .+.++
T Consensus 74 ----~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~~g~-------------~ll~~ls~~L~~~~~~ 136 (234)
T PF12530_consen 74 ----PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPDHGV-------------DLLPLLSGCLNQSCDE 136 (234)
T ss_pred ----HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChhhHH-------------HHHHHHHHHHhccccH
Confidence 3444444441 1 12223344445677777766543211 2566777778 78889
Q ss_pred HHHHHHHHHHHHhhc
Q 007520 537 STRRHVELALCHLAQ 551 (600)
Q Consensus 537 ~v~~~Aa~aL~nLa~ 551 (600)
.++..+..++..||.
T Consensus 137 ~~~alale~l~~Lc~ 151 (234)
T PF12530_consen 137 VAQALALEALAPLCE 151 (234)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999999983
No 428
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=65.89 E-value=2.9e+02 Score=32.98 Aligned_cols=47 Identities=28% Similarity=0.379 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHhhhHHHHHHHHHhhhh
Q 007520 88 YEFEKQLRESQISYDESMRNLVTRSEFLEKENAHLELEVEKILGELN 134 (600)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~e~~~~~~~~~~~~~~~~ 134 (600)
..+=.++.+....-.-.+..|..+++.++|||..|.-|+.-+.++|.
T Consensus 119 ~~~i~~l~~~~~~~e~~~~~l~~~l~~~eken~~Lkye~~~~~kele 165 (769)
T PF05911_consen 119 EKLIAELSEEKSQAEAEIEDLMARLESTEKENSSLKYELHVLSKELE 165 (769)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445666667777778889999999999999999999988888873
No 429
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=65.83 E-value=1.4e+02 Score=33.29 Aligned_cols=91 Identities=22% Similarity=0.188 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHhCCchhHHHHHHcChHHHHHHHHc------CCCHHHHHHHHHHHHHhhcCCchhhhhcchhhHHHHHh
Q 007520 447 TLRMVAGALANLCGNEKLHTMLEEDGAIKALLAMVR------SGNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLME 520 (600)
Q Consensus 447 v~~~Aa~aL~nLa~~~e~r~~i~~~G~i~~Lv~lL~------s~~~~v~~~A~~aL~nLa~~~~~~~~q~~~~~r~~l~e 520 (600)
....+-.++.||++..-... .+..|..+|. ..+..+.+.|+..|..+....+.. +-..+--
T Consensus 231 l~~~~w~~m~nL~~S~~g~~------~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~-------~~~~l~~ 297 (464)
T PF11864_consen 231 LCKPSWRTMRNLLKSHLGHS------AIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQ-------GYPSLPF 297 (464)
T ss_pred cchhHHHHHHHHHcCccHHH------HHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccC-------Ccceecc
Confidence 33344447778876654443 5566777772 245667778888888876553111 1001111
Q ss_pred C--CcHHHHHHhhcCCCHHHHHHHHHHHHHhh
Q 007520 521 D--SALEWLIANSKTNSASTRRHVELALCHLA 550 (600)
Q Consensus 521 ~--g~l~~Lv~Ll~s~~~~v~~~Aa~aL~nLa 550 (600)
. -+++.+...++.+++.+-......+.++-
T Consensus 298 ~~~~vl~sl~~al~~~~~~v~~eIl~~i~~ll 329 (464)
T PF11864_consen 298 SPSSVLPSLLNALKSNSPRVDYEILLLINRLL 329 (464)
T ss_pred cHHHHHHHHHHHHhCCCCeehHHHHHHHHHHH
Confidence 1 25666666677666666666665555554
No 430
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=65.44 E-value=1.3e+02 Score=28.59 Aligned_cols=45 Identities=13% Similarity=0.124 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHhhhchhHHHHHH-HHHHHhhhHHHHHHHHHhH
Q 007520 68 QVELLTAKIEMQQKLRENDKYEFEKQ-LRESQISYDESMRNLVTRS 112 (600)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~ 112 (600)
|.+.++.+|+.+.+.....-.....| +.+...+.....+.++..+
T Consensus 59 eAe~l~a~ye~~L~~Ar~eA~~I~~e~~~~~~a~~~~~~~~~ea~L 104 (155)
T PRK06569 59 EVEKLNKYYNEEIDKTNTEIDRLKKEKIDSLESEFLIKKKNLEQDL 104 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666655555555555 5555556666666666665
No 431
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=65.39 E-value=50 Score=31.21 Aligned_cols=144 Identities=15% Similarity=0.153 Sum_probs=74.4
Q ss_pred HHHHHHhhCC-CCHHHHHHHHHHHHHhhCCcchHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcCCccHHHHH
Q 007520 349 LPKILQLLTS-EDPDVQIHAVKVVANLAAEDINQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMNEMNQGLIM 427 (600)
Q Consensus 349 V~~Lv~LL~s-~~~~vr~~Aa~aL~nLa~~~~~~~~iv~~G~I~~Lv~lL~~~~~~~v~~~Al~aL~NLa~~~~~r~~I~ 427 (600)
++.|+.+|+. .+..+|..+.++|+.|-.-++.+-+....+ .+.-. ....+...... .+.+....+ .-....
T Consensus 12 L~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~-~~~~~---~~~~~~~~~~~---~l~~~~~~~-~~ee~y 83 (160)
T PF11865_consen 12 LDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKS-LDSKS---SENSNDESTDI---SLPMMGISP-SSEEYY 83 (160)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhccccc-CCccc---cccccccchhh---HHhhccCCC-chHHHH
Confidence 3455566654 468999999999999988555543322211 11000 00111111111 111111111 222333
Q ss_pred HhCchhhhHhhhccCCCHHHHHHHHHHHHHHhCCchhHHHHHHcChHHHHHHHHcCCCHHHHHHHHHHHHHhh
Q 007520 428 SRGGGQLLAKTASKTDDPQTLRMVAGALANLCGNEKLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFA 500 (600)
Q Consensus 428 ~~G~I~~Lv~lL~~~~~~~v~~~Aa~aL~nLa~~~e~r~~i~~~G~i~~Lv~lL~s~~~~v~~~A~~aL~nLa 500 (600)
-..++..|+.+|.+..-..-...++.++.++......+..--=...+|.++..++..++..++....-|+.|.
T Consensus 84 ~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~lv 156 (160)
T PF11865_consen 84 PTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQLADLV 156 (160)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 3346777888886533333344566677766533222111111247888888888666677777777777665
No 432
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=65.38 E-value=2.8e+02 Score=32.55 Aligned_cols=51 Identities=16% Similarity=0.127 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhH------HHHHHHHHHHHHHHHHhhhchhHHHHHHHH
Q 007520 45 CELEKLLRECQISYDEAKDNL------VTQVELLTAKIEMQQKLRENDKYEFEKQLR 95 (600)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (600)
.+.+++-....-.|.-.|+.| .|-+..+..+++.+..+..++..-.+.-.+
T Consensus 59 ~e~~aqk~d~E~ritt~e~rflnaqre~t~~~d~ndklE~~Lankda~lrq~eekn~ 115 (916)
T KOG0249|consen 59 REAMAQKEDMEERITTLEKRFLNAQRESTSIHDLNDKLENELANKDADLRQNEEKNR 115 (916)
T ss_pred hhHHhhhcccccccchHHHHHHhccCCCCCcccchHHHHHHHhCcchhhchhHHhhh
Confidence 344444444444555555555 345666667777777776655555544443
No 433
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=65.30 E-value=90 Score=29.55 Aligned_cols=112 Identities=17% Similarity=0.170 Sum_probs=68.1
Q ss_pred HHHHHHHHccCCCHHHHHHHHHHHHHhhcCCccHHHHHHhC--chhhhHhhhccCCCHHHHHHHHHHHHHHh----CCch
Q 007520 390 LDALLLLLRTSQNTTILRVASGAIANLAMNEMNQGLIMSRG--GGQLLAKTASKTDDPQTLRMVAGALANLC----GNEK 463 (600)
Q Consensus 390 I~~Lv~lL~~~~~~~v~~~Al~aL~NLa~~~~~r~~I~~~G--~I~~Lv~lL~~~~~~~v~~~Aa~aL~nLa----~~~e 463 (600)
+..+..+|. ++++.-+-.++..+.-++... ....+.+.| -+..|+.+|...+++.+...++.+|..|. +.++
T Consensus 27 ~~ri~~LL~-s~~~~~rw~G~~Ll~~~~~~~-~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p~ 104 (165)
T PF08167_consen 27 VTRINSLLQ-SKSAYSRWAGLCLLKVTVEQC-SWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKPT 104 (165)
T ss_pred HHHHHHHhC-CCChhhHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCc
Confidence 445666776 545555555555555444431 134444432 35668888877667788888888888775 4566
Q ss_pred hHHHHHHc---ChHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCch
Q 007520 464 LHTMLEED---GAIKALLAMVRSGNIDVIAQVARGLANFAKCESR 505 (600)
Q Consensus 464 ~r~~i~~~---G~i~~Lv~lL~s~~~~v~~~A~~aL~nLa~~~~~ 505 (600)
....+.-. +.++.++.++.. ..+...++.+|..+-...|.
T Consensus 105 l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~pt 147 (165)
T PF08167_consen 105 LTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHHPT 147 (165)
T ss_pred hHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHCCc
Confidence 65555432 445556655554 56677788888888665443
No 434
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=64.91 E-value=1.3e+02 Score=32.50 Aligned_cols=80 Identities=21% Similarity=0.242 Sum_probs=41.6
Q ss_pred HhhhhhhhhhhhHHHHHHHHHHhHhHHHhhhhhHHHHHHHHHHHhhhhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 007520 167 YQKALADTTQLYEKKIAELNKKLEDEHACFEGAVEQLDMVKKLLSDYQNSNQGQKEVHELCVKLKETRQLHESAVYEVQT 246 (600)
Q Consensus 167 ~~~~l~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~~~~~~~~~~~q~~~~~~~e~~~l~~~~~d~~~~~e~~~~el~~ 246 (600)
-.+.+.++.....+-..++.+.|+.= ..-|..++. ++-..+|.|...+.++++.++.+..+..-...+..+|..
T Consensus 232 I~~~~~~~~~~L~kl~~~i~~~lekI----~sREk~iN~--qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~ 305 (359)
T PF10498_consen 232 IESALPETKSQLDKLQQDISKTLEKI----ESREKYINN--QLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAE 305 (359)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHH----HHHHHHHHH--HhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 34445556666666666666666533 333445554 333345555555555655555555555555554444444
Q ss_pred HHHHHH
Q 007520 247 LKSEYK 252 (600)
Q Consensus 247 l~~~~~ 252 (600)
+...+.
T Consensus 306 IseeLe 311 (359)
T PF10498_consen 306 ISEELE 311 (359)
T ss_pred HHHHHH
Confidence 443333
No 435
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=64.30 E-value=1.4e+02 Score=28.68 Aligned_cols=18 Identities=11% Similarity=0.130 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 007520 66 VTQVELLTAKIEMQQKLR 83 (600)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~ 83 (600)
.++++.|+.++..++...
T Consensus 86 ~~eie~l~~~L~~ei~~l 103 (177)
T PF07798_consen 86 QREIEKLRQELREEINKL 103 (177)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 445555555555555444
No 436
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=64.04 E-value=1.7e+02 Score=29.61 Aligned_cols=31 Identities=23% Similarity=0.234 Sum_probs=20.2
Q ss_pred hhhhhHHHHHHHHHHhHhHHHhhhhhHHHHH
Q 007520 174 TTQLYEKKIAELNKKLEDEHACFEGAVEQLD 204 (600)
Q Consensus 174 ~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~~ 204 (600)
-...+..++.+|...++.|...+..-+..+-
T Consensus 122 ~~~~l~~~l~~l~~~~~~Er~~R~erE~~i~ 152 (247)
T PF06705_consen 122 LNQELVRELNELQEAFENERNEREEREENIL 152 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456677777777777777666655555443
No 437
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=63.81 E-value=3.9e+02 Score=33.68 Aligned_cols=130 Identities=24% Similarity=0.254 Sum_probs=70.0
Q ss_pred cchhhhhhhhc-hHHHh----HHHHHHHHHHhHHHHHHHHhhhccHHHHHHHH----------HHHHHHHHHHhhhHHHH
Q 007520 4 VNMVKLKEEFD-YESLC----RKLETQVDHLTAEIERKQKLRENDKCELEKLL----------RECQISYDEAKDNLVTQ 68 (600)
Q Consensus 4 ~~~~~~~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~ 68 (600)
+|+.++++=|+ |.-+. +-++.+++.+..|+.+-.... ++.+..+ .-++..+...+.-|. +
T Consensus 722 e~l~~~~~~~~~~~~l~~~~i~e~~~~l~~~~~el~~~~~~~----e~~~~~l~~~~~~~~~~~~l~~~~~~~e~~~~-d 796 (1294)
T KOG0962|consen 722 EILLKLKPTFGSIIKLIDKEIPELEKELQEVYEELGDLSEEE----EDDEKLLDTIDAAEESAETLQTDVTVLERFLK-D 796 (1294)
T ss_pred HHHHhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhh----hHHHHHhcccchhHHhHHHHhhhhHHHHHHHH-H
Confidence 67888888887 55442 224556666665555443333 2222222 223333333333333 4
Q ss_pred HHHHHHHHHHHHHhhhc--hhHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHhhhHHHHHHHHHhhhhhhhh
Q 007520 69 VELLTAKIEMQQKLREN--DKYEFEKQLRESQISYDESMRNLVTRSEFLEKENAHLELEVEKILGELNHQKD 138 (600)
Q Consensus 69 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~ 138 (600)
++.....|+.+..--+. |--.=.-|+++-...|.++.+.+...+|-+.++.-+-..++.++.+.-+..+.
T Consensus 797 ~~~~~k~ie~~~s~l~~~~d~i~t~~E~~~Ek~~~~~~~~~~rke~E~~~k~~~~~~~~i~~l~~~~~e~k~ 868 (1294)
T KOG0962|consen 797 LKLREKEIEELVSELDSSVDGIRTVDELRKEKSKKQESLDKLRKEIECLQKEVIEQEREISRLINLRNELKE 868 (1294)
T ss_pred HHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444333322 22222334444455666677777777887888887777777776666555554
No 438
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=63.50 E-value=47 Score=32.42 Aligned_cols=84 Identities=23% Similarity=0.267 Sum_probs=34.5
Q ss_pred HHHHHHHHhhhccHHHHHHHHHHHHHHHHHHhhhHH---HHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHhhhHHHHHH
Q 007520 31 AEIERKQKLRENDKCELEKLLRECQISYDEAKDNLV---TQVELLTAKIEMQQKLRENDKYEFEKQLRESQISYDESMRN 107 (600)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (600)
.++.-+......+-.++++.+.+...+|.+.+.... +++..|...+++..+.- ..+..|+.-.+..| ..
T Consensus 91 ~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~----e~l~DE~~~L~l~~----~~ 162 (194)
T PF08614_consen 91 GELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKAN----EILQDELQALQLQL----NM 162 (194)
T ss_dssp -----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH----HH
T ss_pred ccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH----HH
Confidence 444444444444445555566666666666666432 24444444444444444 55555555555433 46
Q ss_pred HHHhHHHHHHHhhhH
Q 007520 108 LVTRSEFLEKENAHL 122 (600)
Q Consensus 108 l~~~~~~~~~e~~~~ 122 (600)
++.+...|++||..|
T Consensus 163 ~e~k~~~l~~En~~L 177 (194)
T PF08614_consen 163 LEEKLRKLEEENREL 177 (194)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 777777777777776
No 439
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=63.40 E-value=73 Score=37.04 Aligned_cols=130 Identities=13% Similarity=0.121 Sum_probs=90.3
Q ss_pred CCHHHHHHHHHHHHHhhC-CcchHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcC-CccHHHHHHhCchhhhH
Q 007520 359 EDPDVQIHAVKVVANLAA-EDINQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMN-EMNQGLIMSRGGGQLLA 436 (600)
Q Consensus 359 ~~~~vr~~Aa~aL~nLa~-~~~~~~~iv~~G~I~~Lv~lL~~~~~~~v~~~Al~aL~NLa~~-~~~r~~I~~~G~I~~Lv 436 (600)
.|+.++..|.-+|..+.. +...+ .+ -+|.|+..+..+|+|.++.+|.-.|..++.. ... ++. --..|.
T Consensus 908 sd~~lq~aA~l~L~klMClS~~fc---~e--hlpllIt~mek~p~P~IR~NaVvglgD~~vcfN~~----~de-~t~yLy 977 (1128)
T COG5098 908 SDEELQVAAYLSLYKLMCLSFEFC---SE--HLPLLITSMEKHPIPRIRANAVVGLGDFLVCFNTT----ADE-HTHYLY 977 (1128)
T ss_pred CCHHHHHHHHHHHHHHHHHhHHHH---HH--HHHHHHHHHhhCCCcceeccceeeccccceehhhh----hHH-HHHHHH
Confidence 578899988888887553 32222 12 3789999998899999999998888887654 111 111 122344
Q ss_pred hhhccCCCHHHHHHHHHHHHHHhCCchhHHHHHHcChHHHHHHHHcCCCHHHHHHHHHHHHHhhcCC
Q 007520 437 KTASKTDDPQTLRMVAGALANLCGNEKLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFAKCE 503 (600)
Q Consensus 437 ~lL~~~~~~~v~~~Aa~aL~nLa~~~e~r~~i~~~G~i~~Lv~lL~s~~~~v~~~A~~aL~nLa~~~ 503 (600)
.-|. ..+..|++.+..++.+|.-.... .-.|-++.+..+|.++|..+..-|-..+..+|+-+
T Consensus 978 rrL~-De~~~V~rtclmti~fLilagq~----KVKGqlg~ma~~L~deda~Isdmar~fft~~a~Kd 1039 (1128)
T COG5098 978 RRLG-DEDADVRRTCLMTIHFLILAGQL----KVKGQLGKMALLLTDEDAEISDMARHFFTQIAKKD 1039 (1128)
T ss_pred HHhc-chhhHHHHHHHHHHHHHHHccce----eeccchhhhHhhccCCcchHHHHHHHHHHHHHhcc
Confidence 4443 36678999999999988532211 12466677888899999999888888888888654
No 440
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=63.06 E-value=22 Score=33.53 Aligned_cols=55 Identities=31% Similarity=0.439 Sum_probs=36.6
Q ss_pred hhhhhchHHHhHH---HHHHHH-------HHhHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHhh
Q 007520 9 LKEEFDYESLCRK---LETQVD-------HLTAEIERKQKLRENDKCELEKLLRECQISYDEAKD 63 (600)
Q Consensus 9 ~~~~~~~~~~~~~---~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 63 (600)
.+..|||++|.++ ||++|. -|.+|++|.....+++...|+..-..|+.-.++.+.
T Consensus 16 ~~~~~~~e~ll~~~~~LE~qL~~~~~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~ 80 (160)
T PF13094_consen 16 REDSFDYEQLLDRKRALERQLAANLHQLELLQEEIEKEEAALERDYEYLQELEKNAKALEREREE 80 (160)
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4568999999865 577766 667888888888876666666544444444444333
No 441
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=62.99 E-value=67 Score=37.33 Aligned_cols=171 Identities=14% Similarity=0.049 Sum_probs=102.4
Q ss_pred cccCchHHHhcccCCC-CccccchHHHHhhc-CchhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCcchHHH
Q 007520 306 YTKDYISKGSSRFGAP-MSLQKSNPSRELSG-QRATIAKICDEVGLPKILQLLTSEDPDVQIHAVKVVANLAAEDINQEK 383 (600)
Q Consensus 306 ~~~g~i~~Lv~~L~s~-~~~~r~~a~~~L~~-~~~~~~~i~e~GgV~~Lv~LL~s~~~~vr~~Aa~aL~nLa~~~~~~~~ 383 (600)
|..-.+|.|...++.. ........+..+.. -......-+....+|.|..-+++.+..++..++..+..++..-+ ..
T Consensus 346 ~~~~~~p~l~pi~~~~~~~~~~l~i~e~mdlL~~Kt~~e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD--~~ 423 (700)
T KOG2137|consen 346 FGPKMLPALKPIYSASDPKQALLFILENMDLLKEKTPPEEVKEKILPLLYRSLEDSDVQIQELALQILPTVAESID--VP 423 (700)
T ss_pred hhhhhhHHHHHHhccCCcccchhhHHhhHHHHHhhCChHHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhcc--HH
Confidence 5555666666666532 22222222222110 01111222334456777788888999999999999998886322 33
Q ss_pred HHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcCCccHHHHHHhCc---hhhhHhhhccCCCHHHHHHHHHHHHHHhC
Q 007520 384 IVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMNEMNQGLIMSRGG---GQLLAKTASKTDDPQTLRMVAGALANLCG 460 (600)
Q Consensus 384 iv~~G~I~~Lv~lL~~~~~~~v~~~Al~aL~NLa~~~~~r~~I~~~G~---I~~Lv~lL~~~~~~~v~~~Aa~aL~nLa~ 460 (600)
++..-.+|.+-.+.....+..++..++.|+.-+.. .+....+ +.++.... ...+|.+....+.+..++..
T Consensus 424 ~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q------~lD~~~v~d~~lpi~~~~-~~~dp~iv~~~~~i~~~l~~ 496 (700)
T KOG2137|consen 424 FVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQ------RLDKAAVLDELLPILKCI-KTRDPAIVMGFLRIYEALAL 496 (700)
T ss_pred HHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHH------HHHHHHhHHHHHHHHHHh-cCCCcHHHHHHHHHHHHHHh
Confidence 45544677777765546677889999999998872 2222223 34444444 34688888777778777775
Q ss_pred CchhHHHHHHcChHHHHHHHHcCCC
Q 007520 461 NEKLHTMLEEDGAIKALLAMVRSGN 485 (600)
Q Consensus 461 ~~e~r~~i~~~G~i~~Lv~lL~s~~ 485 (600)
.......+.-+.++|.++.+.-.+.
T Consensus 497 ~~~~g~ev~~~~VlPlli~ls~~~~ 521 (700)
T KOG2137|consen 497 IIYSGVEVMAENVLPLLIPLSVAPS 521 (700)
T ss_pred hcccceeeehhhhhhhhhhhhhccc
Confidence 5444344455677888777764433
No 442
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=62.80 E-value=2.2e+02 Score=33.64 Aligned_cols=61 Identities=18% Similarity=0.269 Sum_probs=42.0
Q ss_pred HhhCCCCHHHHHHHHHHHHHhhCCcchHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcC
Q 007520 354 QLLTSEDPDVQIHAVKVVANLAAEDINQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMN 419 (600)
Q Consensus 354 ~LL~s~~~~vr~~Aa~aL~nLa~~~~~~~~iv~~G~I~~Lv~lL~~~~~~~v~~~Al~aL~NLa~~ 419 (600)
++|.+....+.-.|+.++.++.....- .+.. .+..|-.++. ++...++-.|.++|..+|+.
T Consensus 252 s~l~~K~emV~~EaArai~~l~~~~~r--~l~p--avs~Lq~fls-sp~~~lRfaAvRtLnkvAm~ 312 (865)
T KOG1078|consen 252 SCLRHKSEMVIYEAARAIVSLPNTNSR--ELAP--AVSVLQLFLS-SPKVALRFAAVRTLNKVAMK 312 (865)
T ss_pred HHHhchhHHHHHHHHHHHhhccccCHh--hcch--HHHHHHHHhc-CcHHHHHHHHHHHHHHHHHh
Confidence 566778888999999999887752111 1111 3444444444 77788899999999999876
No 443
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=62.52 E-value=1.1e+02 Score=27.00 Aligned_cols=65 Identities=18% Similarity=0.266 Sum_probs=44.5
Q ss_pred hhhHHHHHHHHHHhHhHHHhhhhhHHHHHHHHHHHhhhhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007520 176 QLYEKKIAELNKKLEDEHACFEGAVEQLDMVKKLLSDYQNSNQGQKEVHELCVKLKETRQLHESAVYEVQTLKSEYKNLL 255 (600)
Q Consensus 176 ~~~~~~~~~l~~~l~~e~~~~~~~~~~~~~~~~~~~~~q~~~~~~~e~~~l~~~~~d~~~~~e~~~~el~~l~~~~~~l~ 255 (600)
.....+++-|.+.||++.. +.+++.. +.++|...+.-+.++.++....+.+|..+++++.
T Consensus 12 ~el~n~La~Le~slE~~K~----S~~eL~k----------------qkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~ 71 (107)
T PF09304_consen 12 NELQNRLASLERSLEDEKT----SQGELAK----------------QKDQLRNALQSLQAQNASRNQRIAELQAKIDEAR 71 (107)
T ss_dssp --HHHHHHHHHHHHHHHHH----HHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh----hHHHHHH----------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677788888887744 4455533 5677888888888888888888777887776666
Q ss_pred Hhhhh
Q 007520 256 EEKET 260 (600)
Q Consensus 256 ~~~~~ 260 (600)
+....
T Consensus 72 ~~le~ 76 (107)
T PF09304_consen 72 RNLED 76 (107)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55553
No 444
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=62.46 E-value=3.6e+02 Score=32.86 Aligned_cols=25 Identities=36% Similarity=0.453 Sum_probs=10.5
Q ss_pred hHHHHHHHhhhHHHHHHHHHhhhhh
Q 007520 111 RSEFLEKENAHLELEVEKILGELNH 135 (600)
Q Consensus 111 ~~~~~~~e~~~~~~~~~~~~~~~~~ 135 (600)
..+.+..+...++..+..+...+++
T Consensus 418 ~~~~~~~~l~~~~~~~~~~~~~~~~ 442 (908)
T COG0419 418 ELEELERELEELEEEIKKLEEQINQ 442 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444
No 445
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=62.37 E-value=1.3e+02 Score=27.88 Aligned_cols=25 Identities=28% Similarity=0.312 Sum_probs=14.1
Q ss_pred HhHHHHHHHhhhHHHHHHHHHhhhh
Q 007520 110 TRSEFLEKENAHLELEVEKILGELN 134 (600)
Q Consensus 110 ~~~~~~~~e~~~~~~~~~~~~~~~~ 134 (600)
...|+|.+-+.-|+.++.+....|.
T Consensus 73 ~~~E~l~rriq~LEeele~ae~~L~ 97 (143)
T PF12718_consen 73 SNAEQLNRRIQLLEEELEEAEKKLK 97 (143)
T ss_pred HhHHHHHhhHHHHHHHHHHHHHHHH
Confidence 3444566666666666666555543
No 446
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=62.25 E-value=8.5 Score=34.04 Aligned_cols=43 Identities=28% Similarity=0.309 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHhCCchhHHHHHHcChHHHHHHHHcCCCHHHHH
Q 007520 448 LRMVAGALANLCGNEKLHTMLEEDGAIKALLAMVRSGNIDVIA 490 (600)
Q Consensus 448 ~~~Aa~aL~nLa~~~e~r~~i~~~G~i~~Lv~lL~s~~~~v~~ 490 (600)
....+..+..|+..|+....+++.|+++.|+++|.+.|.++..
T Consensus 63 Ld~~Ik~l~~La~~P~LYp~lv~l~~v~sL~~LL~HeN~DIai 105 (108)
T PF08216_consen 63 LDEEIKKLSVLATAPELYPELVELGAVPSLLGLLSHENTDIAI 105 (108)
T ss_pred HHHHHHHHHHccCChhHHHHHHHcCCHHHHHHHHCCCCcceeh
Confidence 4456668888899999999999999999999999888877543
No 447
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=61.70 E-value=1.6e+02 Score=28.71 Aligned_cols=37 Identities=22% Similarity=0.253 Sum_probs=18.7
Q ss_pred hhHHHHHHHHHhHHHHHHHhhhHHHHHHHHHhhhhhh
Q 007520 100 SYDESMRNLVTRSEFLEKENAHLELEVEKILGELNHQ 136 (600)
Q Consensus 100 ~~~~~~~~l~~~~~~~~~e~~~~~~~~~~~~~~~~~~ 136 (600)
++...+..|+.+.+.|.++...+....+.+.+..+..
T Consensus 124 ~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~ 160 (189)
T PF10211_consen 124 ELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEEL 160 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555555555555555555555555444433
No 448
>PRK09169 hypothetical protein; Validated
Probab=61.02 E-value=3.1e+02 Score=36.56 Aligned_cols=132 Identities=23% Similarity=0.214 Sum_probs=69.3
Q ss_pred CHHHHHHhhC-CC-CHHHHHHHHHHHHH-hhCCcchHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcC-CccH
Q 007520 348 GLPKILQLLT-SE-DPDVQIHAVKVVAN-LAAEDINQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMN-EMNQ 423 (600)
Q Consensus 348 gV~~Lv~LL~-s~-~~~vr~~Aa~aL~n-La~~~~~~~~iv~~G~I~~Lv~lL~~~~~~~v~~~Al~aL~NLa~~-~~~r 423 (600)
.|..++.-|+ -+ ++.++. ++..|+. |+..+..+.. ++.-.+..++..|..-++....+.+...|..-... +..+
T Consensus 164 ~v~~lLNalSKWP~~~~c~~-aa~~lA~~la~~~~l~~a-l~~q~va~~lnalSKwp~~~~cr~a~~~lA~rL~~~~~l~ 241 (2316)
T PRK09169 164 SFALLLNALSKWPDNTDCQT-AAEQLADRLASDSRLLQA-MDAQEVANALNALSKWPDSPRCRNAAERLAERLADEPGLL 241 (2316)
T ss_pred HHHHHHHHhccCCCchHHHH-HHHHHHHHhccCHHHHHh-cchHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhcChHHH
Confidence 3555554443 33 444444 4444444 4444444433 33334555666666566666666677777666655 3333
Q ss_pred HHHHHhCchhhhHhhhccCCCHHHHHHHHHHHHH-HhCCchhHHHHHHcChHHHHHHHHc
Q 007520 424 GLIMSRGGGQLLAKTASKTDDPQTLRMVAGALAN-LCGNEKLHTMLEEDGAIKALLAMVR 482 (600)
Q Consensus 424 ~~I~~~G~I~~Lv~lL~~~~~~~v~~~Aa~aL~n-La~~~e~r~~i~~~G~i~~Lv~lL~ 482 (600)
.. +..-.+..+++-|++.++......++.+|.- |+..+..+..|--.|+-..|-.+-+
T Consensus 242 ~~-l~~q~va~~LNAlSKWp~~~~c~~aa~~lA~rla~~~~lr~~~~~Q~vAN~LNALSK 300 (2316)
T PRK09169 242 QS-LRAQEVALLLNALSKWPDDEACRQAAEALAARLAREPGLRLALDPQGVANALNALSK 300 (2316)
T ss_pred Hh-cCHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHhcChhhhhhcCHHHHHHHHHHHHh
Confidence 22 3333566677777776666666666665554 3455566655444444444433333
No 449
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=60.79 E-value=91 Score=35.65 Aligned_cols=46 Identities=11% Similarity=0.151 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHhhhH
Q 007520 49 KLLRECQISYDEAKDNLVTQVELLTAKIEMQQKLRENDKYEFEKQLRESQISYD 102 (600)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (600)
+.+..+..++...+. |++.|++.++++.+-- ..|+.++...+.++.
T Consensus 422 ~~i~~~~~~ve~l~~----e~~~L~~~~ee~k~ei----e~L~~~l~~~~r~~~ 467 (652)
T COG2433 422 KRIKKLEETVERLEE----ENSELKRELEELKREI----EKLESELERFRREVR 467 (652)
T ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 344444444443333 5555555555555443 555555554444443
No 450
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=60.70 E-value=1.9e+02 Score=29.16 Aligned_cols=39 Identities=15% Similarity=0.154 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHH
Q 007520 49 KLLRECQISYDEAKDNLVTQVELLTAKIEMQQKLRENDKYEFEKQLR 95 (600)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (600)
+.+.|+...+.++...+. .+.++....+.|+..+|....
T Consensus 32 ~~L~e~~kE~~~L~~Er~--------~h~eeLrqI~~DIn~lE~iIk 70 (230)
T PF10146_consen 32 KCLEEYRKEMEELLQERM--------AHVEELRQINQDINTLENIIK 70 (230)
T ss_pred HHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHH
Confidence 444455554444444332 344445555555555555444
No 451
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=60.61 E-value=2.9e+02 Score=31.23 Aligned_cols=21 Identities=24% Similarity=0.408 Sum_probs=12.7
Q ss_pred hhhhhHHHHHHHHHHhHhHHH
Q 007520 174 TTQLYEKKIAELNKKLEDEHA 194 (600)
Q Consensus 174 ~~~~~~~~~~~l~~~l~~e~~ 194 (600)
.+..|.+...+++..+.-+.+
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~ 334 (511)
T PF09787_consen 314 EQESFREQPQELSQQLEPELT 334 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 556666666666666654433
No 452
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=60.27 E-value=1.4e+02 Score=27.26 Aligned_cols=70 Identities=19% Similarity=0.234 Sum_probs=35.0
Q ss_pred hhhhhHHHHHHHHHHhHhHHHhhhhhHHHHHHHHHHHhhhhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007520 174 TTQLYEKKIAELNKKLEDEHACFEGAVEQLDMVKKLLSDYQNSNQGQKEVHELCVKLKETRQLHESAVYEVQTLKS 249 (600)
Q Consensus 174 ~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~~~~~~~~~~~q~~~~~~~e~~~l~~~~~d~~~~~e~~~~el~~l~~ 249 (600)
....++.++..++.=++..+.....|+.--.. +++++-....++..+...+..+...+..+..++...+.
T Consensus 18 ~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE~------El~~Ha~~~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~ 87 (132)
T PF07926_consen 18 QEEDAEEQLQSLREDLESQAKIAQEAQQKYER------ELVKHAEDIKELQQLREELQELQQEINELKAEAESAKA 87 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555554444444444333 33344444445555666666666655555555444443
No 453
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=60.00 E-value=3.2e+02 Score=31.49 Aligned_cols=115 Identities=17% Similarity=0.187 Sum_probs=75.5
Q ss_pred cCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCcchHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcCCccHHH
Q 007520 346 EVGLPKILQLLTSEDPDVQIHAVKVVANLAAEDINQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMNEMNQGL 425 (600)
Q Consensus 346 ~GgV~~Lv~LL~s~~~~vr~~Aa~aL~nLa~~~~~~~~iv~~G~I~~Lv~lL~~~~~~~v~~~Al~aL~NLa~~~~~r~~ 425 (600)
.|.+..+++.+.+.+..||..++++|+-++.+-.--...+-.|.+..|..-+- +..+.++..|..+|+.+-....+-..
T Consensus 90 ~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~-DRE~~VR~eAv~~L~~~Qe~~~neen 168 (885)
T COG5218 90 AGTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLF-DREKAVRREAVKVLCYYQEMELNEEN 168 (885)
T ss_pred HHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHhccCChHH
Confidence 34566777888899999999999999988864333334444556666666655 45667899999999988655333332
Q ss_pred HHHhCchhhhHhhhccCCCHHHHHHHHHHHHHHhCCchhHHHH
Q 007520 426 IMSRGGGQLLAKTASKTDDPQTLRMVAGALANLCGNEKLHTML 468 (600)
Q Consensus 426 I~~~G~I~~Lv~lL~~~~~~~v~~~Aa~aL~nLa~~~e~r~~i 468 (600)
.+ ...|+.++.+.++..|++.| |.|+..++..+..+
T Consensus 169 ~~----~n~l~~~vqnDPS~EVRr~a---llni~vdnsT~p~I 204 (885)
T COG5218 169 RI----VNLLKDIVQNDPSDEVRRLA---LLNISVDNSTYPCI 204 (885)
T ss_pred HH----HHHHHHHHhcCcHHHHHHHH---HHHeeeCCCcchhH
Confidence 22 23566677665665677654 56666555544443
No 454
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=59.29 E-value=2.2e+02 Score=29.32 Aligned_cols=181 Identities=16% Similarity=0.083 Sum_probs=0.0
Q ss_pred CCHHHHH--HhhCCCCHHHHHHHHHHHH-----HhhCCcchHHHHHHcCCHHHHHHHHccCC---CHHHHHHHHHHHHHh
Q 007520 347 VGLPKIL--QLLTSEDPDVQIHAVKVVA-----NLAAEDINQEKIVEEGGLDALLLLLRTSQ---NTTILRVASGAIANL 416 (600)
Q Consensus 347 GgV~~Lv--~LL~s~~~~vr~~Aa~aL~-----nLa~~~~~~~~iv~~G~I~~Lv~lL~~~~---~~~v~~~Al~aL~NL 416 (600)
.|++.|+ .+.++...+.-.....-|. .+..+++++-.+.-.+.+|.++.-+.+.. .......++..|+.+
T Consensus 63 ~Glq~Ll~KGL~Ss~t~e~tl~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~La~~ 142 (262)
T PF14225_consen 63 EGLQPLLLKGLRSSSTYELTLRLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEALAQV 142 (262)
T ss_pred hhHHHHHhCccCCCCcHHHHHHHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHH
Q ss_pred hcCCccHHHHHHhCchhhhHhhhcc------CCCHHHHHHHHHHHHHHhCCchhHHHHHHcChHHHHHHHHcCCCHHHHH
Q 007520 417 AMNEMNQGLIMSRGGGQLLAKTASK------TDDPQTLRMVAGALANLCGNEKLHTMLEEDGAIKALLAMVRSGNIDVIA 490 (600)
Q Consensus 417 a~~~~~r~~I~~~G~I~~Lv~lL~~------~~~~~v~~~Aa~aL~nLa~~~e~r~~i~~~G~i~~Lv~lL~s~~~~v~~ 490 (600)
| +..+.+.|..++.. .+..+....++..|+.-...+-.-. .+..|+++|.++.+.++.
T Consensus 143 a----------~~~~~~~La~il~~ya~~~fr~~~dfl~~v~~~l~~~f~P~~~~~------~l~~Ll~lL~n~~~w~~~ 206 (262)
T PF14225_consen 143 A----------EAQGLPNLARILSSYAKGRFRDKDDFLSQVVSYLREAFFPDHEFQ------ILTFLLGLLENGPPWLRR 206 (262)
T ss_pred H----------HhCCCccHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhCchhHHH------HHHHHHHHHhCCcHHHHH
Q ss_pred HHHHHHHHhhcCCchhhhhcchhhHHHHHhCCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCc
Q 007520 491 QVARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSKTNSASTRRHVELALCHLAQNE 553 (600)
Q Consensus 491 ~A~~aL~nLa~~~~~~~~q~~~~~r~~l~e~g~l~~Lv~Ll~s~~~~v~~~Aa~aL~nLa~~~ 553 (600)
.++.+|..+-.. .+.+.. .....+.+|++++.++...-.-.....+..++.+.
T Consensus 207 ~~L~iL~~ll~~---------~d~~~~-~~~dlispllrlL~t~~~~eAL~VLd~~v~~s~s~ 259 (262)
T PF14225_consen 207 KTLQILKVLLPH---------VDMRSP-HGADLISPLLRLLQTDLWMEALEVLDEIVTRSGSP 259 (262)
T ss_pred HHHHHHHHHhcc---------ccCCCC-cchHHHHHHHHHhCCccHHHHHHHHHHHHhhcccc
No 455
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=58.87 E-value=1e+02 Score=26.88 Aligned_cols=68 Identities=16% Similarity=0.111 Sum_probs=51.7
Q ss_pred HcChHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchhhhhcchhhHHHHHhCCcHHHHHHhhcCCCHHHHHHHHHHH
Q 007520 470 EDGAIKALLAMVRSGNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSKTNSASTRRHVELAL 546 (600)
Q Consensus 470 ~~G~i~~Lv~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~q~~~~~r~~l~e~g~l~~Lv~Ll~s~~~~v~~~Aa~aL 546 (600)
..+.+..|+..+..+++.....++..|..|+.+ +.+...+.+-|++..|-.+-..-++..+..+-.++
T Consensus 28 ~~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~~---------~~a~~~l~~iG~~~fL~klr~~~~~~~~~~id~il 95 (98)
T PF14726_consen 28 ERLLLKQLLEWFNFPPVPMKEEVLALLLRLLKS---------PYAAQILRDIGAVRFLSKLRPNVEPNLQAEIDEIL 95 (98)
T ss_pred HHHHHHHHHHHhCCCCCccHHHHHHHHHHHHhC---------cHHHHHHHHccHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 456778888888887777899999999999976 34666788899999977776666666666555444
No 456
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=58.59 E-value=3.4e+02 Score=31.33 Aligned_cols=112 Identities=20% Similarity=0.206 Sum_probs=64.6
Q ss_pred HHHHHHhHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHhhhHH
Q 007520 24 TQVDHLTAEIERKQKLRENDKCELEKLLRECQISYDEAKDNLVTQVELLTAKIEMQQKLRENDKYEFEKQLRESQISYDE 103 (600)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (600)
.||.-|+..+|-|..-. .+||--+.+-++.+.-.|- .||.+...+ .+||-+. .+.|-
T Consensus 125 LQvsvLteqVeaQgEKI----rDLE~cie~kr~kLnatEE-----------mLQqellsr----tsLETqK----lDLma 181 (861)
T KOG1899|consen 125 LQVSVLTEQVEAQGEKI----RDLETCIEEKRNKLNATEE-----------MLQQELLSR----TSLETQK----LDLMA 181 (861)
T ss_pred ehHHHHHHHHHHhhhhH----HHHHHHHHHHHhhhchHHH-----------HHHHHHHhh----hhHHHHH----hHHHH
Confidence 45555666666665333 2344444444443333333 344555555 5665544 47788
Q ss_pred HHHHHHHhHHHHHHHhhhHHHHHHHHHhhhhhh-hhhhhhHHHHHHHHHHhhhhhh
Q 007520 104 SMRNLVTRSEFLEKENAHLELEVEKILGELNHQ-KDQNNLKREKIVQLEISLKNSK 158 (600)
Q Consensus 104 ~~~~l~~~~~~~~~e~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 158 (600)
.+.+|+-++-.|+||....|.-.+.-.+.|++= +...+++.....|-|..+|.++
T Consensus 182 evSeLKLkltalEkeq~e~E~K~R~se~l~qevn~~kv~e~~~erlqye~klkstk 237 (861)
T KOG1899|consen 182 EVSELKLKLTALEKEQNETEKKLRLSENLMQEVNQSKVGEVVQERLQYETKLKSTK 237 (861)
T ss_pred HHHHhHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Confidence 899999999999999988887776655444221 3334455555555455544443
No 457
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=58.02 E-value=88 Score=33.80 Aligned_cols=175 Identities=9% Similarity=0.050 Sum_probs=100.9
Q ss_pred CCCHHHHHHHHHHHHHhhC-C--cchHHHHHHcCCHHHHHHHHcc---------C-CCHHHHHHHHHHHHHhhcCCccHH
Q 007520 358 SEDPDVQIHAVKVVANLAA-E--DINQEKIVEEGGLDALLLLLRT---------S-QNTTILRVASGAIANLAMNEMNQG 424 (600)
Q Consensus 358 s~~~~vr~~Aa~aL~nLa~-~--~~~~~~iv~~G~I~~Lv~lL~~---------~-~~~~v~~~Al~aL~NLa~~~~~r~ 424 (600)
..+..-|..|-..|.+.-. + .+....+.+. ++.++..++. + .+..+...|+.+|..+..++..-.
T Consensus 4 ~~~~~~r~daY~~l~~~l~~~~~~~~~~~l~~k--~~~l~~~i~rDi~~~~~~~~p~~~~L~~qALkll~~~l~~~~i~~ 81 (372)
T PF12231_consen 4 GSDRSSRLDAYMTLNNALKAYDNLPDRQALQDK--MSLLLQFIQRDISSSSSKGDPFDSRLVIQALKLLGFFLYHPEIVS 81 (372)
T ss_pred cCCcHHHHHHHHHHHHHHHHhcCCCcHHHHHHH--HHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHHHHHccHHHHh
Confidence 4455556666666666432 2 2233344332 4555555432 1 256778889999999988876655
Q ss_pred HHHHhC---chhhhHhhhccCCCH-HHHHHHHHHHHHHhCCchhHHHHHHcChHHHHHHHHc-----CCCHHHHHHHHHH
Q 007520 425 LIMSRG---GGQLLAKTASKTDDP-QTLRMVAGALANLCGNEKLHTMLEEDGAIKALLAMVR-----SGNIDVIAQVARG 495 (600)
Q Consensus 425 ~I~~~G---~I~~Lv~lL~~~~~~-~v~~~Aa~aL~nLa~~~e~r~~i~~~G~i~~Lv~lL~-----s~~~~v~~~A~~a 495 (600)
.+-+.- .+...+..+.....+ .+.....++|..=-..+ .+.....+..++..+. -+...+....+.+
T Consensus 82 ~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q~f~~----~~~~~~~~~~l~~~l~~i~~~~~s~si~~erL~i 157 (372)
T PF12231_consen 82 TLSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSDQKFSP----KIMTSDRVERLLAALHNIKNRFPSKSIISERLNI 157 (372)
T ss_pred hCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCC----cccchhhHHHHHHHHHHhhccCCchhHHHHHHHH
Confidence 554422 233444555443444 34445555555322222 2334444555555542 4566788889999
Q ss_pred HHHhhcCCchhhhhcchhhHHHHHh--CCcHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 007520 496 LANFAKCESRAIVQGQRKGRSHLME--DSALEWLIANSKTNSASTRRHVELALCHL 549 (600)
Q Consensus 496 L~nLa~~~~~~~~q~~~~~r~~l~e--~g~l~~Lv~Ll~s~~~~v~~~Aa~aL~nL 549 (600)
+.+|... .+..|.. .-++|.++..+-+....++..|...+..+
T Consensus 158 ~~~ll~q-----------~p~~M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~ 202 (372)
T PF12231_consen 158 YKRLLSQ-----------FPQQMIKHADIWFPILFPDLLSSAKDIRTKAISLLLEA 202 (372)
T ss_pred HHHHHHH-----------HHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHH
Confidence 9999854 3344554 23888888877777777877766666555
No 458
>smart00338 BRLZ basic region leucin zipper.
Probab=57.98 E-value=35 Score=26.90 Aligned_cols=35 Identities=34% Similarity=0.479 Sum_probs=25.8
Q ss_pred HHHHHHHHhHHHHHHHhhhHHHHHHHHHhhhhhhh
Q 007520 103 ESMRNLVTRSEFLEKENAHLELEVEKILGELNHQK 137 (600)
Q Consensus 103 ~~~~~l~~~~~~~~~e~~~~~~~~~~~~~~~~~~~ 137 (600)
.-+..|+.++..|..+|..|..++..|..++..-+
T Consensus 26 ~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk 60 (65)
T smart00338 26 AEIEELERKVEQLEAENERLKKEIERLRRELEKLK 60 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44557788888888888888888888777654433
No 459
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=57.90 E-value=2.5e+02 Score=29.66 Aligned_cols=17 Identities=24% Similarity=0.255 Sum_probs=7.2
Q ss_pred hhhhhHHHHHHHHHHHh
Q 007520 195 CFEGAVEQLDMVKKLLS 211 (600)
Q Consensus 195 ~~~~~~~~~~~~~~~~~ 211 (600)
+..+...++..++....
T Consensus 185 ~~~~L~~e~~~Lk~~~~ 201 (325)
T PF08317_consen 185 RKAELEEELENLKQLVE 201 (325)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 33334444444444443
No 460
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=57.87 E-value=79 Score=24.82 Aligned_cols=30 Identities=33% Similarity=0.450 Sum_probs=16.7
Q ss_pred HHHHHHHhHHHHHHHhhhHHHHHHHHHhhh
Q 007520 104 SMRNLVTRSEFLEKENAHLELEVEKILGEL 133 (600)
Q Consensus 104 ~~~~l~~~~~~~~~e~~~~~~~~~~~~~~~ 133 (600)
.+..|+.++..|..+|..|..++..|...+
T Consensus 27 ~~~~Le~~~~~L~~en~~L~~~~~~L~~~~ 56 (64)
T PF00170_consen 27 YIEELEEKVEELESENEELKKELEQLKKEI 56 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555556666666665555555443
No 461
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=57.55 E-value=97 Score=35.80 Aligned_cols=128 Identities=16% Similarity=0.225 Sum_probs=72.0
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhhCCcchHHHHHHc-CCHHHHHHHHccCCCHHHHHHHHHHHHHhhcC--CccHHHH
Q 007520 350 PKILQLLTSEDPDVQIHAVKVVANLAAEDINQEKIVEE-GGLDALLLLLRTSQNTTILRVASGAIANLAMN--EMNQGLI 426 (600)
Q Consensus 350 ~~Lv~LL~s~~~~vr~~Aa~aL~nLa~~~~~~~~iv~~-G~I~~Lv~lL~~~~~~~v~~~Al~aL~NLa~~--~~~r~~I 426 (600)
..++..+. .++..+..++.+|.|+..++.++..+... ..+...+.-....++..++...+....|++.. ..+-+
T Consensus 592 ~~li~~~~-~~~an~ll~vR~L~N~f~~~~g~~~~~s~~~~i~~~~~~~~s~~~knl~ia~atlaln~sv~l~~~~~~-- 668 (745)
T KOG0301|consen 592 GTLIPILN-ADPANQLLVVRCLANLFSNPAGRELFMSRLESILDPVIEASSLSNKNLQIALATLALNYSVLLIQDNEQ-- 668 (745)
T ss_pred Hhhhcccc-cchhHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhhhhhhhcccchhHHHHHHHHHHHHHHHHHhcccc--
Confidence 33444443 56778888999999999998877777654 11111122222234455555433333444432 22211
Q ss_pred HHhCchhhhHhhhc----cCCCHHHHHHHHHHHHHHhCCchhHHHHHHcChHHHHHHHHc
Q 007520 427 MSRGGGQLLAKTAS----KTDDPQTLRMVAGALANLCGNEKLHTMLEEDGAIKALLAMVR 482 (600)
Q Consensus 427 ~~~G~I~~Lv~lL~----~~~~~~v~~~Aa~aL~nLa~~~e~r~~i~~~G~i~~Lv~lL~ 482 (600)
.|+.+.+...+. ...+.+..-..+-||.+|+..+.....++..-.+..++.-++
T Consensus 669 --~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~t~~~~~~~~A~~~~v~sia~~~~ 726 (745)
T KOG0301|consen 669 --LEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLMTVDASVIQLAKNRSVDSIAKKLK 726 (745)
T ss_pred --cchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhccccHHHHHHHHhcCHHHHHHHHH
Confidence 344444443332 222333344455689999988888777877767777777664
No 462
>PF15369 KIAA1328: Uncharacterised protein KIAA1328
Probab=57.49 E-value=56 Score=34.39 Aligned_cols=49 Identities=29% Similarity=0.234 Sum_probs=31.4
Q ss_pred hhhhhhHHHHHHHHHHhHhHHHhhhhhHHHHHHHHHHHhhhhhcccchh
Q 007520 173 DTTQLYEKKIAELNKKLEDEHACFEGAVEQLDMVKKLLSDYQNSNQGQK 221 (600)
Q Consensus 173 ~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~~~~~~~~~~~q~~~~~~~ 221 (600)
+.-+.||.+|..|.+.=+==..-+++..-+-..-|-||+-||+|-+.+-
T Consensus 33 ~~~~~~e~~~~~l~~~~~~~~~~~~~~~~qyrecqell~lyq~ylseqq 81 (328)
T PF15369_consen 33 AEQESFEKKIRQLEEQNELIIKEREDLQQQYRECQELLSLYQKYLSEQQ 81 (328)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567788888777643222222245556667778888998888866554
No 463
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=56.96 E-value=38 Score=25.81 Aligned_cols=29 Identities=24% Similarity=0.318 Sum_probs=23.7
Q ss_pred HHHHHHHHhHHHHHHHhhhHHHHHHHHHh
Q 007520 103 ESMRNLVTRSEFLEKENAHLELEVEKILG 131 (600)
Q Consensus 103 ~~~~~l~~~~~~~~~e~~~~~~~~~~~~~ 131 (600)
..+..|+.++..|..+|..|..++..|..
T Consensus 25 ~~~~~le~~~~~L~~en~~L~~~i~~L~~ 53 (54)
T PF07716_consen 25 QREEELEQEVQELEEENEQLRQEIAQLER 53 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44557888888999999999999988764
No 464
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=56.87 E-value=3.7e+02 Score=31.17 Aligned_cols=96 Identities=16% Similarity=0.179 Sum_probs=44.4
Q ss_pred HHhhhHHHHHHHHHhHHHH----HHHhhhHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHhhhhhhhhh-hhhhHHhhhh
Q 007520 97 SQISYDESMRNLVTRSEFL----EKENAHLELEVEKILGELNHQKDQNNLKREKIVQLEISLKNSKQYE-MENSTYQKAL 171 (600)
Q Consensus 97 ~~~~~~~~~~~l~~~~~~~----~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~n~~~~~~l 171 (600)
+-..=.+.+.+|..+||-. ..|.++|+.....-..+..+.-...-.++.+...++.+++.-.+.. --...|.+.=
T Consensus 402 ~v~~s~~rl~~L~~qWe~~R~pL~~e~r~lk~~~~~~~~e~~~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~ 481 (594)
T PF05667_consen 402 LVEASEQRLVELAQQWEKHRAPLIEEYRRLKEKASNRESESKQKLQEIKELREEIKEIEEEIRQKEELYKQLVKELEKLP 481 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3334456677888888743 3344444444333333333333344455555555555544433221 1122222222
Q ss_pred hh-hhhhhHHHHHHHHHHhHhH
Q 007520 172 AD-TTQLYEKKIAELNKKLEDE 192 (600)
Q Consensus 172 ~~-~~~~~~~~~~~l~~~l~~e 192 (600)
.+ ..+.|-.-|-|..+-+..-
T Consensus 482 k~~~Rs~Yt~RIlEIv~NI~KQ 503 (594)
T PF05667_consen 482 KDVNRSAYTRRILEIVKNIRKQ 503 (594)
T ss_pred CCCCHHHHHHHHHHHHHhHHHH
Confidence 22 4455666666655555433
No 465
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=56.68 E-value=3.9e+02 Score=31.44 Aligned_cols=40 Identities=13% Similarity=0.099 Sum_probs=18.2
Q ss_pred hhHHHHHHHHHHhhhhhhhhhhhhhHHhhhhhhhhhhhHH
Q 007520 141 NLKREKIVQLEISLKNSKQYEMENSTYQKALADTTQLYEK 180 (600)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~ 180 (600)
+.-.+++.+.+...+.++...-.+..+..-+..+-+.|+.
T Consensus 426 d~~~r~~~~~~~~~e~Lqk~~~~~k~ll~e~~t~gsA~ed 465 (698)
T KOG0978|consen 426 DDAERQIRQVEELSEELQKKEKNFKCLLSEMETIGSAFED 465 (698)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444455544444444444444444444444444444
No 466
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=56.28 E-value=5e+02 Score=32.51 Aligned_cols=98 Identities=16% Similarity=0.144 Sum_probs=53.4
Q ss_pred HHHhHHHHHHHhhhHHHHHHHHHhhhhhhhhhhhhHHHHHHHHH--H--hhh-hhhhhhhhhhHHhhhhhhhhhhhH---
Q 007520 108 LVTRSEFLEKENAHLELEVEKILGELNHQKDQNNLKREKIVQLE--I--SLK-NSKQYEMENSTYQKALADTTQLYE--- 179 (600)
Q Consensus 108 l~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~-~~~~~~~~n~~~~~~l~~~~~~~~--- 179 (600)
+..+.+-+.++-.+++.+++.|...+|.++....+..-+..+-. - +.. .+++.-..|-.+-+.|...|+.+.
T Consensus 206 ~~~q~dl~~~~~~~l~~~~~~Lq~~in~kR~~~se~~~~~~~~~~~~~~~~~~~i~~~~~~N~~Ls~~L~~~t~~~n~l~ 285 (1109)
T PRK10929 206 ARLRSELAKKRSQQLDAYLQALRNQLNSQRQREAERALESTELLAEQSGDLPKSIVAQFKINRELSQALNQQAQRMDLIA 285 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455568888888999999999999888777666533322211 0 111 223333557666666666555433
Q ss_pred HHHHHHHHHhHhHHHhhhhhHHHHHH
Q 007520 180 KKIAELNKKLEDEHACFEGAVEQLDM 205 (600)
Q Consensus 180 ~~~~~l~~~l~~e~~~~~~~~~~~~~ 205 (600)
.+-...++.+.+-........+++..
T Consensus 286 ~~~~~~~~~l~~~~q~~~~i~eQi~~ 311 (1109)
T PRK10929 286 SQQRQAASQTLQVRQALNTLREQSQW 311 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23333334444443333444455544
No 467
>PRK09169 hypothetical protein; Validated
Probab=55.98 E-value=5.6e+02 Score=34.32 Aligned_cols=108 Identities=16% Similarity=0.083 Sum_probs=45.9
Q ss_pred cccCchHHHhcccCCCCccccch-HHHH----hhcCchhHHHHHhcCCHHHHHHhh-CCCCHHHHHHHHHHHHH-hhCCc
Q 007520 306 YTKDYISKGSSRFGAPMSLQKSN-PSRE----LSGQRATIAKICDEVGLPKILQLL-TSEDPDVQIHAVKVVAN-LAAED 378 (600)
Q Consensus 306 ~~~g~i~~Lv~~L~s~~~~~r~~-a~~~----L~~~~~~~~~i~e~GgV~~Lv~LL-~s~~~~vr~~Aa~aL~n-La~~~ 378 (600)
++.-.++.++..+.......-.. ++.. ++...... .-++..+|..++.-| +.++...-+.++..|.. |..++
T Consensus 160 l~~~~v~~lLNalSKWP~~~~c~~aa~~lA~~la~~~~l~-~al~~q~va~~lnalSKwp~~~~cr~a~~~lA~rL~~~~ 238 (2316)
T PRK09169 160 LDAISFALLLNALSKWPDNTDCQTAAEQLADRLASDSRLL-QAMDAQEVANALNALSKWPDSPRCRNAAERLAERLADEP 238 (2316)
T ss_pred hhhHHHHHHHHHhccCCCchHHHHHHHHHHHHhccCHHHH-HhcchHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhcCh
Confidence 55556666666666553222222 2221 23333322 333444455556444 34444444555555554 33333
Q ss_pred chHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHH
Q 007520 379 INQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIAN 415 (600)
Q Consensus 379 ~~~~~iv~~G~I~~Lv~lL~~~~~~~v~~~Al~aL~N 415 (600)
.....+-.. .+..++..|..-++......++.+|..
T Consensus 239 ~l~~~l~~q-~va~~LNAlSKWp~~~~c~~aa~~lA~ 274 (2316)
T PRK09169 239 GLLQSLRAQ-EVALLLNALSKWPDDEACRQAAEALAA 274 (2316)
T ss_pred HHHHhcCHH-HHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 322222111 244445555433333333334444443
No 468
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=55.97 E-value=2.2e+02 Score=28.30 Aligned_cols=200 Identities=17% Similarity=0.239 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHhhhHHHH
Q 007520 46 ELEKLLRECQISYDEAKDNLVTQVELLTAKIEMQQKLRENDKYEFEKQLRESQISYDESMRNLVTRSEFLEKENAHLELE 125 (600)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~e~~~~~~~ 125 (600)
++.-.+.-++..+.+.+. ++.-|+.+++...... .++.++-..|-..+.++...+ .++......+
T Consensus 6 d~d~~~~~~~~e~~~~E~----e~~~l~~k~~e~~~~~--------~~m~~i~~e~Ek~i~~~i~e~---~~~~~~~~~~ 70 (207)
T PF05010_consen 6 DLDAAIKKVQEEVAEKEE----EEQELKKKYEELHKEN--------QEMRKIMEEYEKTIAQMIEEK---QKQKELSEAE 70 (207)
T ss_pred hHHHHHHHHHHHHHHhHH----HHHHHHHHHHHHHHhH--------HHHHHHHHHHHHHHHHHHHHH---HhhHHhHHHH
Q ss_pred HHHHHhhhhhhhhhhhhHHHHHHHHHHhhhhhhhhhhhhhHHhhhhhhhhhhhHHHHHHHHHHhHhHHHhhhhhHHHHHH
Q 007520 126 VEKILGELNHQKDQNNLKREKIVQLEISLKNSKQYEMENSTYQKALADTTQLYEKKIAELNKKLEDEHACFEGAVEQLDM 205 (600)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~~~ 205 (600)
+.++..+-++-.+.-+.+.....+|=-.+...++-.-.=-...-.|...++.|...+.......+ +...-|++.|+.
T Consensus 71 i~~~~~erdq~~~dL~s~E~sfsdl~~ryek~K~vi~~~k~NEE~Lkk~~~ey~~~l~~~eqry~---aLK~hAeekL~~ 147 (207)
T PF05010_consen 71 IQKLLKERDQAYADLNSLEKSFSDLHKRYEKQKEVIEGYKKNEETLKKCIEEYEERLKKEEQRYQ---ALKAHAEEKLEK 147 (207)
T ss_pred HHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Q ss_pred HHHHHhhhhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHH
Q 007520 206 VKKLLSDYQNSNQGQKEVHELCVKLKETRQLHESAVYEVQTLKSEYKNLLEEKETMSDEL 265 (600)
Q Consensus 206 ~~~~~~~~q~~~~~~~e~~~l~~~~~d~~~~~e~~~~el~~l~~~~~~l~~~~~~~~~el 265 (600)
.+.=|..+ ..++..|+..|+..+....-...|+...|.-....+.+|.+.=..+...+
T Consensus 148 ANeei~~v--~~~~~~e~~aLqa~lkk~e~~~~SLe~~LeQK~kEn~ELtkICDeLI~k~ 205 (207)
T PF05010_consen 148 ANEEIAQV--RSKHQAELLALQASLKKEEMKVQSLEESLEQKTKENEELTKICDELISKM 205 (207)
T ss_pred HHHHHHHH--HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 469
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=55.89 E-value=2.7e+02 Score=29.36 Aligned_cols=26 Identities=23% Similarity=0.413 Sum_probs=13.1
Q ss_pred HHHhhhhchHHHHHHHHhhhHHHHhh
Q 007520 254 LLEEKETMSDELQAARQRLLVEEKQR 279 (600)
Q Consensus 254 l~~~~~~~~~el~~~~~~l~~e~~~~ 279 (600)
..+..+.+-+|-.+++..|..+...+
T Consensus 259 ~~~eek~ireEN~rLqr~L~~E~err 284 (310)
T PF09755_consen 259 YLQEEKEIREENRRLQRKLQREVERR 284 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555566666665544333
No 470
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=55.67 E-value=2.7e+02 Score=29.20 Aligned_cols=32 Identities=16% Similarity=0.232 Sum_probs=14.9
Q ss_pred HHHHHHHHhHHHHHHHhhhHHHHHHHHHhhhh
Q 007520 103 ESMRNLVTRSEFLEKENAHLELEVEKILGELN 134 (600)
Q Consensus 103 ~~~~~l~~~~~~~~~e~~~~~~~~~~~~~~~~ 134 (600)
+.+.++.++-..+-.....|..+++.+....+
T Consensus 69 eev~elK~kR~ein~kl~eL~~~~~~l~e~~~ 100 (294)
T COG1340 69 EEVQELKEKRDEINAKLQELRKEYRELKEKRN 100 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444444444444444445555555555544
No 471
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=55.29 E-value=3.2e+02 Score=29.95 Aligned_cols=61 Identities=11% Similarity=-0.032 Sum_probs=34.7
Q ss_pred hccHHHHHHHHHHHHHHHHHHhhhHH-HHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHhhh
Q 007520 41 ENDKCELEKLLRECQISYDEAKDNLV-TQVELLTAKIEMQQKLRENDKYEFEKQLRESQISY 101 (600)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (600)
..+|..-.+.+...-..+.+...... .....-..-+++|......+....|..+.+++..+
T Consensus 140 ~~dp~~A~~i~n~~~~~y~~~~~~~~~~~~~~~~~fl~~ql~~~~~~l~~ae~~l~~fr~~~ 201 (444)
T TIGR03017 140 GVDPRFAATVANAFAQAYIDTNIELKVEPAQKAALWFVQQIAALREDLARAQSKLSAYQQEK 201 (444)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34566666555555555554443332 12334445566666666666677777777777655
No 472
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=55.28 E-value=83 Score=34.39 Aligned_cols=134 Identities=14% Similarity=0.117 Sum_probs=79.6
Q ss_pred hhhHhhhccCCCHHHHHHHHHHHHHHhCCchhHHHHHHcChHHHHHHHHc----------CCCHHHHHHHHHHHHHhhcC
Q 007520 433 QLLAKTASKTDDPQTLRMVAGALANLCGNEKLHTMLEEDGAIKALLAMVR----------SGNIDVIAQVARGLANFAKC 502 (600)
Q Consensus 433 ~~Lv~lL~~~~~~~v~~~Aa~aL~nLa~~~e~r~~i~~~G~i~~Lv~lL~----------s~~~~v~~~A~~aL~nLa~~ 502 (600)
..|+..|.+...+-.+..++.+++=|+.+...-..+.....+..|+.+.. ..+..|...+..+|+|+..+
T Consensus 48 e~i~~Vle~~~p~t~~v~~LetvrILSRdk~~L~~~~~~q~~~~ll~~A~ls~~e~sl~~v~d~~vi~EslKCLcNlvf~ 127 (532)
T KOG4464|consen 48 ERIFEVLENGEPLTHRVVCLETVRILSRDKDGLEPLTNDQLCQKLLALAELSSNENSLPTVADMHVIMESLKCLCNLVFH 127 (532)
T ss_pred HHHHHHHhcCCCchhhhhHHHHHHHHhccccccccccchHHHHHHHHHHHhccccCCCCcccchHHHHHHHHHHHHHHhc
Confidence 34555554432233444555677777777655444444445555555532 23457889999999999988
Q ss_pred CchhhhhcchhhHHHHHhCCcHHHHHHhhcC-----CCHHHHHHHHHHHHHh-hcCchhHHHHH-HcccHHHHHHhhhc
Q 007520 503 ESRAIVQGQRKGRSHLMEDSALEWLIANSKT-----NSASTRRHVELALCHL-AQNEDNARDFI-SRGGAKELVQISIE 574 (600)
Q Consensus 503 ~~~~~~q~~~~~r~~l~e~g~l~~Lv~Ll~s-----~~~~v~~~Aa~aL~nL-a~~~~~~~~lv-~~G~l~~Lv~ll~~ 574 (600)
+ ...|..+.+......++..+.. -...+...=...|.-+ +...+.+..++ ..+|++.+.+++.+
T Consensus 128 S--------q~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~Gl~~lt~~led 198 (532)
T KOG4464|consen 128 S--------QRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLGLELLTNWLED 198 (532)
T ss_pred c--------HHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhcccHHHHHHhhc
Confidence 6 4566677777776666664322 1223333333444444 23445555554 77899999988864
No 473
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=55.18 E-value=1.8e+02 Score=26.99 Aligned_cols=15 Identities=33% Similarity=0.465 Sum_probs=5.9
Q ss_pred HHHHHhHHHHHHHHh
Q 007520 25 QVDHLTAEIERKQKL 39 (600)
Q Consensus 25 ~~~~~~~~~~~~~~~ 39 (600)
.+-.+-.|++|....
T Consensus 60 ~~~~l~~d~~~l~~~ 74 (151)
T PF11559_consen 60 KLRRLRSDIERLQND 74 (151)
T ss_pred HHHHHHhHHHHHHHH
Confidence 333333444443333
No 474
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=54.94 E-value=85 Score=25.90 Aligned_cols=34 Identities=24% Similarity=0.264 Sum_probs=27.3
Q ss_pred HHHHHHhHHHHHHHhhhHHHHHHHHHhhhhhhhh
Q 007520 105 MRNLVTRSEFLEKENAHLELEVEKILGELNHQKD 138 (600)
Q Consensus 105 ~~~l~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~ 138 (600)
++..++.+..|.|||=+|-..|-=|...+++..+
T Consensus 2 lrEqe~~i~~L~KENF~LKLrI~fLee~l~~~~~ 35 (75)
T PF07989_consen 2 LREQEEQIDKLKKENFNLKLRIYFLEERLQKLGP 35 (75)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhccc
Confidence 5677888889999999999999888888874433
No 475
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=54.83 E-value=55 Score=31.75 Aligned_cols=40 Identities=25% Similarity=0.376 Sum_probs=22.8
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHhhhH
Q 007520 59 DEAKDNLVTQVELLTAKIEMQQKLRENDKYEFEKQLRESQISYD 102 (600)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (600)
.+..+...+|++.||.++.+.. .|...+.++-...+.+||
T Consensus 153 ~~~~~~~~~ei~~lk~el~~~~----~~~~~LkkQ~~~l~~eyd 192 (192)
T PF05529_consen 153 KEENKKLSEEIEKLKKELEKKE----KEIEALKKQSEGLQKEYD 192 (192)
T ss_pred hhhhhhhHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhhcC
Confidence 3445556778888887777632 233555555555555443
No 476
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=54.77 E-value=31 Score=29.55 Aligned_cols=69 Identities=23% Similarity=0.234 Sum_probs=50.0
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHhhCCcchHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcC
Q 007520 349 LPKILQLLTSEDPDVQIHAVKVVANLAAEDINQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMN 419 (600)
Q Consensus 349 V~~Lv~LL~s~~~~vr~~Aa~aL~nLa~~~~~~~~iv~~G~I~~Lv~lL~~~~~~~v~~~Al~aL~NLa~~ 419 (600)
....+..+.++.+.+|.++...|..|..... ...+-..+++..++..|. ++++-+--+|..+|..|+..
T Consensus 5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~-~~~~~~~~il~l~l~~L~-d~DsyVYL~aI~~L~~La~~ 73 (92)
T PF10363_consen 5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKS-EPVIDIPKILDLFLSQLK-DEDSYVYLNAIKGLAALADR 73 (92)
T ss_pred HHHHHHHccCCCcchHHHHHHHHHHHHHcCC-cchhhHHHHHHHHHHHcC-CCCchHHHHHHHHHHHHHHH
Confidence 4556677888999999999999999987544 111222334555666676 66777888899999999865
No 477
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=54.32 E-value=44 Score=31.00 Aligned_cols=72 Identities=18% Similarity=0.268 Sum_probs=59.0
Q ss_pred CHHHHHHhhCCCCHHHHHHHHHHHHHhhCC--cchHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcC
Q 007520 348 GLPKILQLLTSEDPDVQIHAVKVVANLAAE--DINQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMN 419 (600)
Q Consensus 348 gV~~Lv~LL~s~~~~vr~~Aa~aL~nLa~~--~~~~~~iv~~G~I~~Lv~lL~~~~~~~v~~~Al~aL~NLa~~ 419 (600)
++..|-.-|.+.++.++..|+.+|-.|..+ ......+.+.+.+..|+.++.+..++.++..++..+.+-+..
T Consensus 42 a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~ 115 (142)
T cd03569 42 AMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALA 115 (142)
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHH
Confidence 466777777889999999999999998885 445778888889999999998777888999888888777643
No 478
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=53.77 E-value=69 Score=29.78 Aligned_cols=73 Identities=10% Similarity=0.060 Sum_probs=58.4
Q ss_pred ChHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchhhhhcchhhHHHHHhCCcHHHHHHhhcC-CCHHHHHHHHHHHHHhh
Q 007520 472 GAIKALLAMVRSGNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSKT-NSASTRRHVELALCHLA 550 (600)
Q Consensus 472 G~i~~Lv~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~q~~~~~r~~l~e~g~l~~Lv~Ll~s-~~~~v~~~Aa~aL~nLa 550 (600)
.++.+|..-|.++++.++..|+.+|-.++..++ ......+.....+..|+.++.. .++.|+..+...+..++
T Consensus 37 ~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG-------~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~ 109 (144)
T cd03568 37 DCLKAIMKRLNHKDPNVQLRALTLLDACAENCG-------KRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWA 109 (144)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCC-------HHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHH
Confidence 367778888889999999999999999987653 2334446667888889998887 78999999999998875
Q ss_pred c
Q 007520 551 Q 551 (600)
Q Consensus 551 ~ 551 (600)
.
T Consensus 110 ~ 110 (144)
T cd03568 110 D 110 (144)
T ss_pred H
Confidence 3
No 479
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=53.59 E-value=93 Score=27.23 Aligned_cols=30 Identities=27% Similarity=0.281 Sum_probs=25.5
Q ss_pred HHHHHHHHHhHHHHHHHhhhHHHHHHHHHh
Q 007520 102 DESMRNLVTRSEFLEKENAHLELEVEKILG 131 (600)
Q Consensus 102 ~~~~~~l~~~~~~~~~e~~~~~~~~~~~~~ 131 (600)
...+..|..++..++++|..|..++...+.
T Consensus 79 ~~~~~~L~~~l~~l~~eN~~L~~~i~~~r~ 108 (109)
T PF03980_consen 79 KKEREQLNARLQELEEENEALAEEIQEQRK 108 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 456679999999999999999999988653
No 480
>KOG0992 consensus Uncharacterized conserved protein [Function unknown]
Probab=53.27 E-value=3.7e+02 Score=30.18 Aligned_cols=168 Identities=29% Similarity=0.268 Sum_probs=84.7
Q ss_pred hhhchHHHhHHHHHHHHHHhHHHHHHHHhhhccHHHHHHHHHHHH---HHHHHHhhhH-----------HHHHHHHHHHH
Q 007520 11 EEFDYESLCRKLETQVDHLTAEIERKQKLRENDKCELEKLLRECQ---ISYDEAKDNL-----------VTQVELLTAKI 76 (600)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~-----------~~~~~~~~~~~ 76 (600)
|-||++.+-|--+-|+.-|-.+.||-.+. + +-+++++.|+. +.+...+..+ .-++++||...
T Consensus 142 Ek~d~e~~m~~~~~q~Esls~~le~~~~~-~---~~~~kl~ie~e~~~h~~qq~e~~l~t~~a~~e~~nrh~~erlk~~~ 217 (613)
T KOG0992|consen 142 EKVDREGLMRQQTQQIESLSEELERLRPI-E---SVAEKLRIELEQLRHSTQQEENLLTTTLAAVEEENRHLKERLKIVE 217 (613)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHhhhhH-H---HHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHH
Confidence 34888888887788888887777773332 2 55566555543 2232222222 22333333322
Q ss_pred HHHHHhhhchhHHHHHHHHHHHhhhHHHHHHH--HHhHHHHHHHhhhHHHHHHHHHhhhhhhhh-hh--hhHHHH-HHHH
Q 007520 77 EMQQKLRENDKYEFEKQLRESQISYDESMRNL--VTRSEFLEKENAHLELEVEKILGELNHQKD-QN--NLKREK-IVQL 150 (600)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~-~~~~ 150 (600)
. +-.+++..| ++++-.+..|---|+.++.||...++-=++ .+ ++-..| ..+|
T Consensus 218 ~----------------------s~~e~l~kl~~EqQlq~~~~ehkllee~~~rl~~~~s~VegS~S~~~l~~ek~r~~l 275 (613)
T KOG0992|consen 218 E----------------------SRLESLGKLNSEQQLQALIREHKLLEEHLERLHLQLSDVEGSWSGQNLALEKQRSRL 275 (613)
T ss_pred H----------------------HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHH
Confidence 2 222333222 234555666666677777777666543331 11 111111 1111
Q ss_pred HHhhhhhhhhhhhhhHHh---hhhhhhhhhhHHHHHHHHHHhHhHHHhhhhhHHHHHHHHHHHh
Q 007520 151 EISLKNSKQYEMENSTYQ---KALADTTQLYEKKIAELNKKLEDEHACFEGAVEQLDMVKKLLS 211 (600)
Q Consensus 151 ~~~~~~~~~~~~~n~~~~---~~l~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~~~~~~~~~ 211 (600)
|-. ...|-..|+ +++.|.+|..+...-+|+ .++||.........-+..++.=|+
T Consensus 276 ee~------~~~e~~e~rk~v~k~~~l~q~~~~~~~eL~-K~kde~~~n~~~~~lie~lq~el~ 332 (613)
T KOG0992|consen 276 EEQ------VAEETTEKRKAVKKRDDLIQSRKQVSFELE-KAKDEIKQNDDKVKLIEELQDELS 332 (613)
T ss_pred HHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhccchHHHHHHHHHHHHH
Confidence 111 111333333 444567777777777787 777776666655555555444444
No 481
>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning]
Probab=53.16 E-value=3.5e+02 Score=29.77 Aligned_cols=28 Identities=29% Similarity=0.407 Sum_probs=22.3
Q ss_pred ccchhhhhhh--hchHHHhHHHHHHHHHHh
Q 007520 3 VVNMVKLKEE--FDYESLCRKLETQVDHLT 30 (600)
Q Consensus 3 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 30 (600)
|+|.-+.+|+ |+|.+.|-.+|.=++.-.
T Consensus 119 vvNfa~fRe~k~~~~~~~~~q~eslle~~~ 148 (446)
T KOG4438|consen 119 VVNFALFREEKMDLYRPFIQQLESLLELRK 148 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6888888887 899999988887665443
No 482
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=52.96 E-value=84 Score=27.34 Aligned_cols=64 Identities=14% Similarity=0.117 Sum_probs=48.1
Q ss_pred HcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcCCccHHHHHHhCchhhhHhhhccCCCHHHHHHH
Q 007520 386 EEGGLDALLLLLRTSQNTTILRVASGAIANLAMNEMNQGLIMSRGGGQLLAKTASKTDDPQTLRMV 451 (600)
Q Consensus 386 ~~G~I~~Lv~lL~~~~~~~v~~~Al~aL~NLa~~~~~r~~I~~~G~I~~Lv~lL~~~~~~~v~~~A 451 (600)
..+.+..|+.++. .++......++..|..|+.+|.....+.+.|++..|.++- ..-++..+...
T Consensus 28 ~~~Ll~~LleWFn-f~~~~~~~~VL~Ll~~L~~~~~a~~~l~~iG~~~fL~klr-~~~~~~~~~~i 91 (98)
T PF14726_consen 28 ERLLLKQLLEWFN-FPPVPMKEEVLALLLRLLKSPYAAQILRDIGAVRFLSKLR-PNVEPNLQAEI 91 (98)
T ss_pred HHHHHHHHHHHhC-CCCCccHHHHHHHHHHHHhCcHHHHHHHHccHHHHHHHHH-hcCCHHHHHHH
Confidence 4456777888887 5555577889999999999999999999999999977665 33455544433
No 483
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=52.66 E-value=3.9e+02 Score=30.23 Aligned_cols=90 Identities=23% Similarity=0.272 Sum_probs=46.6
Q ss_pred hhhhHHHHHHHHHHhHhHHHhhhhhHHHHHHHHHHHhhhhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007520 175 TQLYEKKIAELNKKLEDEHACFEGAVEQLDMVKKLLSDYQNSNQGQKEVHELCVKLKETRQLHESAVYEVQTLKSEYKNL 254 (600)
Q Consensus 175 ~~~~~~~~~~l~~~l~~e~~~~~~~~~~~~~~~~~~~~~q~~~~~~~e~~~l~~~~~d~~~~~e~~~~el~~l~~~~~~l 254 (600)
..-|.++|.+|...+..-.+....-..+-..|.+-+...++ ++..+.+.+..+.+.+..+..||-+.+...
T Consensus 415 k~~Y~~RI~eLt~qlQ~adSKa~~f~~Ec~aL~~rL~~aE~------ek~~l~eeL~~a~~~i~~LqDEL~TTr~NY--- 485 (518)
T PF10212_consen 415 KSYYMSRIEELTSQLQHADSKAVHFYAECRALQKRLESAEK------EKESLEEELKEANQNISRLQDELETTRRNY--- 485 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhH---
Confidence 34577777777777776666655555566665544443322 233344444444444444444433333222
Q ss_pred HHhhhhchHHHHHHHHhhh
Q 007520 255 LEEKETMSDELQAARQRLL 273 (600)
Q Consensus 255 ~~~~~~~~~el~~~~~~l~ 273 (600)
+.+...+-|-|..+..+|.
T Consensus 486 E~QLs~MSEHLasmNeqL~ 504 (518)
T PF10212_consen 486 EEQLSMMSEHLASMNEQLA 504 (518)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444445555555544443
No 484
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=52.14 E-value=2.9e+02 Score=28.54 Aligned_cols=48 Identities=17% Similarity=0.342 Sum_probs=24.5
Q ss_pred hhhchhHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHhhhHHHHHHHHHhhh
Q 007520 82 LRENDKYEFEKQLRESQISYDESMRNLVTRSEFLEKENAHLELEVEKILGEL 133 (600)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~e~~~~~~~~~~~~~~~ 133 (600)
..+.++..+++++.. -+.++..+..+...+.+++..+..+|+.+.++|
T Consensus 42 ~~~~~~~~~q~ei~~----L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI 89 (265)
T COG3883 42 ELQKEKKNIQNEIES----LDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEI 89 (265)
T ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444442 234444555555566666666666666655555
No 485
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=52.12 E-value=2.5e+02 Score=28.37 Aligned_cols=26 Identities=35% Similarity=0.238 Sum_probs=10.8
Q ss_pred HHHHhHHHHHHHhhhHHHHHHHHHhh
Q 007520 107 NLVTRSEFLEKENAHLELEVEKILGE 132 (600)
Q Consensus 107 ~l~~~~~~~~~e~~~~~~~~~~~~~~ 132 (600)
.|..+.+.|+..|.+++..+.+...+
T Consensus 60 ~l~~e~e~L~~~~~~l~~~v~~q~~e 85 (251)
T PF11932_consen 60 QLEREIENLEVYNEQLERQVASQEQE 85 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444333333
No 486
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=52.11 E-value=2.5e+02 Score=27.73 Aligned_cols=178 Identities=19% Similarity=0.247 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHhhhHHHHHHHHHhHH------------H
Q 007520 47 LEKLLRECQISYDEAKDNLVTQVELLTAKIEMQQKLRENDKYEFEKQLRESQISYDESMRNLVTRSE------------F 114 (600)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~------------~ 114 (600)
|+..+.|++..+.+++..++ ...+..+.+.+....+...+..+..+-+ .
T Consensus 28 l~q~ird~e~~l~~a~~~~a-------------------~~~a~~~~le~~~~~~~~~~~~~~~~A~~Al~~g~edLAr~ 88 (221)
T PF04012_consen 28 LEQAIRDMEEQLRKARQALA-------------------RVMANQKRLERKLDEAEEEAEKWEKQAELALAAGREDLARE 88 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHH
Q ss_pred HHHHhhhHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHhhhhhhhhhhhhhHHhhhhhhhhhhhHHHHHHHHHHhHhHHH
Q 007520 115 LEKENAHLELEVEKILGELNHQKDQNNLKREKIVQLEISLKNSKQYEMENSTYQKALADTTQLYEKKIAELNKKLEDEHA 194 (600)
Q Consensus 115 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~l~~~l~~e~~ 194 (600)
...+..+++..+..+...+.++......+...+..++..+...+..... ..-+...+.+.....+-+..+. ..+-..
T Consensus 89 al~~k~~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~-l~ar~~~a~a~~~~~~~~~~~~--~~~a~~ 165 (221)
T PF04012_consen 89 ALQRKADLEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREE-LKARENAAKAQKKVNEALASFS--VSSAMD 165 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhccCC--ccchHH
Q ss_pred hhhhhHHHHHHHHHHHhhhhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc-hHHHHHHHHh
Q 007520 195 CFEGAVEQLDMVKKLLSDYQNSNQGQKEVHELCVKLKETRQLHESAVYEVQTLKSEYKNLLEEKETM-SDELQAARQR 271 (600)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~q~~~~~~~e~~~l~~~~~d~~~~~e~~~~el~~l~~~~~~l~~~~~~~-~~el~~~~~~ 271 (600)
.+...++.+.. ...--....++.....++..++..+.... .. .++|.+++..
T Consensus 166 ~~er~e~ki~~-----------------~ea~a~a~~el~~~~~~~e~~l~~~~~~~--------~~~~~~La~LK~~ 218 (221)
T PF04012_consen 166 SFERMEEKIEE-----------------MEARAEASAELADSDQDLEAELEELERDS--------SVSEDELAALKAK 218 (221)
T ss_pred HHHHHHHHHHH-----------------HHHHHHHHHHhccCcccHHHHHHHhcCCC--------cchHHHHHHHHhH
No 487
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=52.02 E-value=2.7e+02 Score=28.27 Aligned_cols=52 Identities=23% Similarity=0.335 Sum_probs=19.6
Q ss_pred hhhHHHHHHHHHhHHHHHHHhhhHHHHHHHHHhhhhhhhhhhhhHHHHHHHH
Q 007520 99 ISYDESMRNLVTRSEFLEKENAHLELEVEKILGELNHQKDQNNLKREKIVQL 150 (600)
Q Consensus 99 ~~~~~~~~~l~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (600)
...-+.+..|........+|+..|+.++......+.+.............+|
T Consensus 57 ~eaee~~~rL~~~~~~~~eEk~~Le~e~~e~~~~i~~l~ee~~~ke~Ea~~l 108 (246)
T PF00769_consen 57 QEAEEEKQRLEEEAEMQEEEKEQLEQELREAEAEIARLEEESERKEEEAEEL 108 (246)
T ss_dssp HHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555566666666666666666666665555544433333333333333
No 488
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=51.59 E-value=4.6e+02 Score=30.70 Aligned_cols=53 Identities=23% Similarity=0.268 Sum_probs=33.4
Q ss_pred hhhhhhhhhhhhhHHhhhh-hhhhhhhHHHHHHHHHHhHhHHHhhhhhHHHHHH
Q 007520 153 SLKNSKQYEMENSTYQKAL-ADTTQLYEKKIAELNKKLEDEHACFEGAVEQLDM 205 (600)
Q Consensus 153 ~~~~~~~~~~~n~~~~~~l-~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~~~ 205 (600)
.+..-+.-++|..+.-++. +.-+..|.--+..|+..|..|..|....++++..
T Consensus 328 qlt~eKe~~~Ee~nk~k~~~s~~v~e~qtti~~L~~lL~~Eqqr~~~~ed~lk~ 381 (786)
T PF05483_consen 328 QLTEEKEAQMEELNKAKAQHSFVVTELQTTICNLKELLTTEQQRLKKNEDQLKI 381 (786)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 3344444445554443333 3356677777888888888888888777776665
No 489
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=51.42 E-value=56 Score=25.68 Aligned_cols=52 Identities=25% Similarity=0.307 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHhhhHHHHHHHH
Q 007520 50 LLRECQISYDEAKDNLVTQVELLTAKIEMQQKLRENDKYEFEKQLRESQISYDESMRNLVTRSEFLEKENAHLELEVEKI 129 (600)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~e~~~~~~~~~~~ 129 (600)
++..|+..+-+..+.+. ..||.... .|......|.+++..|..++..|
T Consensus 12 rNR~AAr~~R~RKk~~~---------------------~~Le~~~~-----------~L~~en~~L~~~~~~L~~~~~~L 59 (64)
T PF00170_consen 12 RNREAARRSRQRKKQYI---------------------EELEEKVE-----------ELESENEELKKELEQLKKEIQSL 59 (64)
T ss_dssp HHHHHHHHHHHHHHHHH---------------------HHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhH---------------------HHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777666555 44444444 55666666666666666666666
Q ss_pred Hhhh
Q 007520 130 LGEL 133 (600)
Q Consensus 130 ~~~~ 133 (600)
..+.
T Consensus 60 ~~e~ 63 (64)
T PF00170_consen 60 KSEN 63 (64)
T ss_dssp HHHH
T ss_pred Hhhc
Confidence 6543
No 490
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=51.29 E-value=1.6e+02 Score=28.84 Aligned_cols=31 Identities=26% Similarity=0.273 Sum_probs=13.1
Q ss_pred HHHHHHHHhHHHHHHHhhhHHHHHHHHHhhh
Q 007520 103 ESMRNLVTRSEFLEKENAHLELEVEKILGEL 133 (600)
Q Consensus 103 ~~~~~l~~~~~~~~~e~~~~~~~~~~~~~~~ 133 (600)
+..+.++.+.+.-..++..++.+|.+|...|
T Consensus 110 e~~k~le~~~~~~~~~~~~~e~~i~~Le~ki 140 (190)
T PF05266_consen 110 EERKKLEKKIEEKEAELKELESEIKELEMKI 140 (190)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 3333444444433444444444444444433
No 491
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=51.12 E-value=2.7e+02 Score=31.24 Aligned_cols=91 Identities=21% Similarity=0.210 Sum_probs=48.4
Q ss_pred hhhhchHHHhHHHHHHHHHHhHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhchhHH
Q 007520 10 KEEFDYESLCRKLETQVDHLTAEIERKQKLRENDKCELEKLLRECQISYDEAKDNLVTQVELLTAKIEMQQKLRENDKYE 89 (600)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (600)
|++=|---=.|.+..++...+.|+-||+-.. --|.-++.+.++.+-.. +-|+|.+..-|+.=.... +.
T Consensus 205 KelrdtN~q~~s~~eel~~kt~el~~q~Ee~----skLlsql~d~qkk~k~~----~~Ekeel~~~Lq~~~da~----~q 272 (596)
T KOG4360|consen 205 KELRDTNTQARSGQEELQSKTKELSRQQEEN----SKLLSQLVDLQKKIKYL----RHEKEELDEHLQAYKDAQ----RQ 272 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHhhHHHHHHH----HHHHHHHHHHHHHHHhhH----HH
Confidence 3443444444555556666666666666332 22333344444443332 336666665555444444 56
Q ss_pred HHHHHHHHHhhhHHHHHHHHHhH
Q 007520 90 FEKQLRESQISYDESMRNLVTRS 112 (600)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~l~~~~ 112 (600)
++.|+.+.+-.|+|-+-++.+--
T Consensus 273 l~aE~~EleDkyAE~m~~~~Eae 295 (596)
T KOG4360|consen 273 LTAELEELEDKYAECMQMLHEAE 295 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777666665443
No 492
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=51.05 E-value=67 Score=29.24 Aligned_cols=72 Identities=14% Similarity=0.145 Sum_probs=57.4
Q ss_pred CHHHHHHhhCCCCHHHHHHHHHHHHHhhCC--cchHHHHHHcCCHHHHHHHHcc--CCCHHHHHHHHHHHHHhhcC
Q 007520 348 GLPKILQLLTSEDPDVQIHAVKVVANLAAE--DINQEKIVEEGGLDALLLLLRT--SQNTTILRVASGAIANLAMN 419 (600)
Q Consensus 348 gV~~Lv~LL~s~~~~vr~~Aa~aL~nLa~~--~~~~~~iv~~G~I~~Lv~lL~~--~~~~~v~~~Al~aL~NLa~~ 419 (600)
++..|-.-|.++++.++..|+.+|-.|+.+ +.....+.....+..|+.++.+ ..++.++..++..+.+.+..
T Consensus 38 a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~ 113 (133)
T cd03561 38 AARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSES 113 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 366677777889999999999999999984 3357777776788889999975 46778999888888877754
No 493
>cd07593 BAR_MUG137_fungi The Bin/Amphiphysin/Rvs (BAR) domain of Schizosaccharomyces pombe Meiotically Up-regulated Gene 137 protein and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This subfamily is composed predominantly of uncharacterized fungal proteins with similarity to Schizosaccharomyces pombe Meiotically Up-regulated Gene 137 protein (MUG137), which may play a role in meiosis and sporulation in fission yeast. MUG137 contains an N-terminal BAR domain and a C-terminal SH3 domain, similar to endophilins. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be invol
Probab=50.44 E-value=2.7e+02 Score=27.77 Aligned_cols=81 Identities=12% Similarity=0.243 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHH---hhhHHHHHHHHHhHHHHHHHhhhHHHHHH
Q 007520 51 LRECQISYDEAKDNLVTQVELLTAKIEMQQKLRENDKYEFEKQLRESQ---ISYDESMRNLVTRSEFLEKENAHLELEVE 127 (600)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~e~~~~~~~~~ 127 (600)
.-+|+.+|.+.+..|.. .++..+-.-+.+..+|+..+.++|.++. -+||-....+.. -.++...++.||+
T Consensus 80 ~G~a~~kia~~q~~f~~---~~~~~~l~pL~~~l~~~k~i~k~RKkLe~rRLdyD~~ksk~~k----ak~~~~~~eeElr 152 (215)
T cd07593 80 LGRAHCKIGTLQEEFAD---RLSDTFLANIERSLAEMKEYHSARKKLESRRLAYDAALTKSQK----AKKEDSRLEEELR 152 (215)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----ccccchhHHHHHH
Confidence 35777778877777652 2233333333333335556666655544 366655544432 2334456777777
Q ss_pred HHHhhhhhhhh
Q 007520 128 KILGELNHQKD 138 (600)
Q Consensus 128 ~~~~~~~~~~~ 138 (600)
.-.....+++.
T Consensus 153 ~Ae~kfees~E 163 (215)
T cd07593 153 RAKAKYEESSE 163 (215)
T ss_pred HHHHHHHHHHH
Confidence 75555544443
No 494
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=50.37 E-value=55 Score=30.48 Aligned_cols=72 Identities=18% Similarity=0.229 Sum_probs=58.5
Q ss_pred CHHHHHHhhCCCCHHHHHHHHHHHHHhhCCc--chHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcC
Q 007520 348 GLPKILQLLTSEDPDVQIHAVKVVANLAAED--INQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMN 419 (600)
Q Consensus 348 gV~~Lv~LL~s~~~~vr~~Aa~aL~nLa~~~--~~~~~iv~~G~I~~Lv~lL~~~~~~~v~~~Al~aL~NLa~~ 419 (600)
++..|..=|.+.++.++..|+.+|-.|+.|- .....|...+.+..|+.++....+..++..++..+...+..
T Consensus 38 a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~ 111 (144)
T cd03568 38 CLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADE 111 (144)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHH
Confidence 3666666677899999999999999999843 45778888889999999998657888999888888877644
No 495
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=50.29 E-value=2.7e+02 Score=33.32 Aligned_cols=10 Identities=20% Similarity=0.318 Sum_probs=3.9
Q ss_pred HHHHHHHHHH
Q 007520 45 CELEKLLREC 54 (600)
Q Consensus 45 ~~~~~~~~~~ 54 (600)
.++++.+.+-
T Consensus 511 ~~~~~li~~L 520 (771)
T TIGR01069 511 EEINVLIEKL 520 (771)
T ss_pred HHHHHHHHHH
Confidence 3444433333
No 496
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=50.23 E-value=4.1e+02 Score=31.24 Aligned_cols=20 Identities=25% Similarity=0.501 Sum_probs=14.2
Q ss_pred HHHHhhhhHHHHHHHHhccC
Q 007520 274 VEEKQRKAIEYELVKLKKTA 293 (600)
Q Consensus 274 ~e~~~~~~le~~~~~l~~~l 293 (600)
.|...++++...+..++...
T Consensus 297 ~e~~~r~kL~N~i~eLkGnI 316 (670)
T KOG0239|consen 297 KEKEERRKLHNEILELKGNI 316 (670)
T ss_pred HHHHHHHHHHHHHHHhhcCc
Confidence 45577788888888777553
No 497
>PF13514 AAA_27: AAA domain
Probab=49.78 E-value=6.1e+02 Score=31.67 Aligned_cols=260 Identities=19% Similarity=0.283 Sum_probs=0.0
Q ss_pred chHHHhHHHHHHHHHHhHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-------HHHHhhhch
Q 007520 14 DYESLCRKLETQVDHLTAEIERKQKLRENDKCELEKLLRECQISYDEAKDNLVTQVELLTAKIE-------MQQKLREND 86 (600)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~ 86 (600)
+...++++-+..++....-..+...+.+ +..++++.+.+++.....++. +++....++. =-.......
T Consensus 653 ~l~~~l~~a~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~w~~~l~~~gL~~~~~~~~ 727 (1111)
T PF13514_consen 653 ELAALLEEAEALLEEWEQAAARREQLEE-ELQQLEQELEEAEAELQEAQE----ALEEWQEEWQEALAELGLPADASPEE 727 (1111)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhCCCCCCCCHHH
Q ss_pred hHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHhhhHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHhhhhhhhhhhhhhH
Q 007520 87 KYEFEKQLRESQISYDESMRNLVTRSEFLEKENAHLELEVEKILGELNHQKDQNNLKREKIVQLEISLKNSKQYEMENST 166 (600)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~ 166 (600)
... --+..+.-......+..+..+++.+.++...++..+..|...++..-...... .....|...|+...+...
T Consensus 728 ~~~-~l~~l~~l~~~~~~~~~~~~ri~~~~~~~~~f~~~~~~L~~~l~~~~~~~~~~-~~~~~L~~~l~~a~~~~~---- 801 (1111)
T PF13514_consen 728 ALE-ALELLEELREALAEIRELRRRIEQMEADLAAFEEQVAALAERLGPDLPEDPAE-EALEALRARLEEAREAQE---- 801 (1111)
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccCcHH-HHHHHHHHHHHHHHHHHH----
Q ss_pred HhhhhhhhhhhhHHHHHHHHHHhHhHHHhhhhhHHHHHHHHHHHh-----hhhhcccchhhHHHHHHHHHHHHHHH--HH
Q 007520 167 YQKALADTTQLYEKKIAELNKKLEDEHACFEGAVEQLDMVKKLLS-----DYQNSNQGQKEVHELCVKLKETRQLH--ES 239 (600)
Q Consensus 167 ~~~~l~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~~~~~~~~~-----~~q~~~~~~~e~~~l~~~~~d~~~~~--e~ 239 (600)
.......++.++...++.-.......+.++..+-.... ++........+...+...+.++...+ ..
T Consensus 802 -------~~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~~a~~~~~e~l~~~~~~~~~~~~l~~~~~~~~~~l~~~~ 874 (1111)
T PF13514_consen 802 -------ERERLQEQLEELEEELEQAEEELEELEAELAELLEQAGVEDEEELREAEERAEERRELREELEDLERQLERQA 874 (1111)
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q ss_pred HHHHHHHHHHHH-----HHHHHhhhhchHHHHHHHHhhhHHHHhhhhHHHHHHHHhc
Q 007520 240 AVYEVQTLKSEY-----KNLLEEKETMSDELQAARQRLLVEEKQRKAIEYELVKLKK 291 (600)
Q Consensus 240 ~~~el~~l~~~~-----~~l~~~~~~~~~el~~~~~~l~~e~~~~~~le~~~~~l~~ 291 (600)
-+.++.++...+ ..+.........++..+...+.+=...+...+..+..+..
T Consensus 875 ~~~~~~~l~~e~~~~d~~~l~~~l~~l~~~l~~l~~~~~~l~~~~~~~~~~l~~l~~ 931 (1111)
T PF13514_consen 875 DGLDLEELEEELEELDPDELEAELEELEEELEELEEELEELQEERAELEQELEALEG 931 (1111)
T ss_pred CcccHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
No 498
>PF05781 MRVI1: MRVI1 protein; InterPro: IPR008677 This family consists of mammalian MRVI1 proteins which are related to the lymphoid-restricted membrane protein (JAW1) and the IP3 receptor associated cGMP kinase substrates A and B (IRAGA and IRAGB). The function of MRVI1 is unknown although mutations in the Mrvi1 gene induces myeloid leukaemia by altering the expression of a gene important for myeloid cell growth and/or differentiation so it has been speculated that Mrvi1 is a tumour suppressor gene []. IRAG is very similar in sequence to MRVI1 and is an essential NO/cGKI-dependent regulator of IP3-induced calcium release. Activation of cGKI decreases IP3-stimulated elevations in intracellular calcium, induces smooth muscle relaxation and contributes to the antiproliferative and pro-apoptotic effects of NO/cGMP []. Jaw1 is a member of a class of proteins with COOH-terminal hydrophobic membrane anchors and is structurally similar to proteins involved in vesicle targeting and fusion. This suggests that the function and/or the structure of the ER in lymphocytes may be modified by lymphoid-restricted resident ER proteins [].
Probab=49.52 E-value=3.2e+02 Score=30.98 Aligned_cols=120 Identities=23% Similarity=0.249 Sum_probs=0.0
Q ss_pred hhhccHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHH
Q 007520 39 LRENDKCELEKLLRECQISYDEAKDNLVTQVELLTAKIEMQQKLRENDKYEFEKQLRESQISYDESMRNLVTRSEFLEKE 118 (600)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~e 118 (600)
.|.+|---|++++.-.+++-.-+|.|+..||++.+.-|+.=...-.+| +...|-|+.|...+
T Consensus 203 ~f~~D~~TLe~R~~~~eR~RdlaEeNl~kEi~~~~~~l~~l~~lc~~d------------~e~~e~~~kl~~~l------ 264 (538)
T PF05781_consen 203 GFKCDRFTLEKRLKLEERSRDLAEENLKKEIENCLKLLESLAPLCWED------------NESREIIQKLQKSL------ 264 (538)
T ss_pred HhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhh------------HHHHHHHHHHHHHH------
Q ss_pred hhhHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHhhhhhhhhhhhhhHHhhhhhhhhhhhHHHHHHHHHHhHhHHHhhhh
Q 007520 119 NAHLELEVEKILGELNHQKDQNNLKREKIVQLEISLKNSKQYEMENSTYQKALADTTQLYEKKIAELNKKLEDEHACFEG 198 (600)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~l~~~l~~e~~~~~~ 198 (600)
+++...-.+=+...+|..-++| ..-+..++..|-.-+.-|+...+.||+
T Consensus 265 ---------~~l~~~~~rvss~AE~lGAv~Q------------------E~R~SkAvevM~qhvenLkr~~~keha---- 313 (538)
T PF05781_consen 265 ---------DVLHQCATRVSSRAEMLGAVHQ------------------ESRVSKAVEVMIQHVENLKRMYEKEHA---- 313 (538)
T ss_pred ---------HHHHHHHHHHHHHHHHhcchHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHH----
Q ss_pred hHHHHHHHHHHH
Q 007520 199 AVEQLDMVKKLL 210 (600)
Q Consensus 199 ~~~~~~~~~~~~ 210 (600)
+|..+|+++
T Consensus 314 ---eL~E~k~~l 322 (538)
T PF05781_consen 314 ---ELEELKKLL 322 (538)
T ss_pred ---HHHHHHHHH
No 499
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=49.37 E-value=2.8e+02 Score=27.57 Aligned_cols=183 Identities=17% Similarity=0.184 Sum_probs=0.0
Q ss_pred hhchhHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHhhhHHHHHHHHHhhhhhhhhh-hhhHHHHHHHHHHhhhhhhhhh
Q 007520 83 RENDKYEFEKQLRESQISYDESMRNLVTRSEFLEKENAHLELEVEKILGELNHQKDQ-NNLKREKIVQLEISLKNSKQYE 161 (600)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 161 (600)
+..||++.-+...+--..+-.....|..+++.+.++|..+..=|..+.+++.+--.. -.........+..-++.-.|..
T Consensus 3 s~~d~d~~~~~~~~e~~~~E~e~~~l~~k~~e~~~~~~~m~~i~~e~Ek~i~~~i~e~~~~~~~~~~~i~~~~~erdq~~ 82 (207)
T PF05010_consen 3 SQKDLDAAIKKVQEEVAEKEEEEQELKKKYEELHKENQEMRKIMEEYEKTIAQMIEEKQKQKELSEAEIQKLLKERDQAY 82 (207)
T ss_pred cHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHhhHHHHH
Q ss_pred hhhhHHhhhhhhhhhhhHHHHHHHHHHhHhHHHhhhhhHHHHHHHHHHHhhhhhcccchhhHHHHHHHHHHHHHHHHHHH
Q 007520 162 MENSTYQKALADTTQLYEKKIAELNKKLEDEHACFEGAVEQLDMVKKLLSDYQNSNQGQKEVHELCVKLKETRQLHESAV 241 (600)
Q Consensus 162 ~~n~~~~~~l~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~~~~~~~~~~~q~~~~~~~e~~~l~~~~~d~~~~~e~~~ 241 (600)
-+-.+-.++..|--..|++.=.-+.+.-.+|-......++-... +.....-+.-+..+-+.+
T Consensus 83 ~dL~s~E~sfsdl~~ryek~K~vi~~~k~NEE~Lkk~~~ey~~~-----------------l~~~eqry~aLK~hAeek- 144 (207)
T PF05010_consen 83 ADLNSLEKSFSDLHKRYEKQKEVIEGYKKNEETLKKCIEEYEER-----------------LKKEEQRYQALKAHAEEK- 144 (207)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHH-
Q ss_pred HHHHHHHHHHHHHHHhhhhchHHHHHHHHhhhHHHHhhhhHHHHHHH
Q 007520 242 YEVQTLKSEYKNLLEEKETMSDELQAARQRLLVEEKQRKAIEYELVK 288 (600)
Q Consensus 242 ~el~~l~~~~~~l~~~~~~~~~el~~~~~~l~~e~~~~~~le~~~~~ 288 (600)
|..-..++.+-......++..++-.+.-+.-....++..+..
T Consensus 145 -----L~~ANeei~~v~~~~~~e~~aLqa~lkk~e~~~~SLe~~LeQ 186 (207)
T PF05010_consen 145 -----LEKANEEIAQVRSKHQAELLALQASLKKEEMKVQSLEESLEQ 186 (207)
T ss_pred -----HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 500
>PF04821 TIMELESS: Timeless protein; InterPro: IPR006906 The timeless gene in Drosophila melanogaster (Fruit fly) and its homologues in a number of other insects and mammals (including human) are involved in circadian rhythm control []. This family includes related proteins from a number of fungal species and from Arabidopsis thaliana.
Probab=49.26 E-value=1e+02 Score=31.74 Aligned_cols=144 Identities=17% Similarity=0.172 Sum_probs=0.0
Q ss_pred CCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCcchHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhc--------
Q 007520 347 VGLPKILQLLTSEDPDVQIHAVKVVANLAAEDINQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAM-------- 418 (600)
Q Consensus 347 GgV~~Lv~LL~s~~~~vr~~Aa~aL~nLa~~~~~~~~iv~~G~I~~Lv~lL~~~~~~~v~~~Al~aL~NLa~-------- 418 (600)
+.+.-|..+|..+++..+ .+..+|+. ..++..+.||.|+..-. ++.+...++..|.+|++
T Consensus 13 ~~LkdL~r~lr~dd~~~~-~v~r~lg~--------~~iv~~DLiPiL~~~~~---~~~l~~~~l~LLV~LT~P~~~~~~~ 80 (266)
T PF04821_consen 13 ECLKDLKRFLRRDDEDQR-DVRRQLGE--------WNIVQKDLIPILISYKD---DDKLFLACLRLLVNLTWPIELLVES 80 (266)
T ss_pred HHHHHHHHHHHHhCcchH-HHHHHHHH--------hchhhhhHHHHHHhccC---chHHHHHHHHHHHHhCCCHHHhccC
Q ss_pred --CCcc---------------HHHHHHhCchhhhHhhhccC----------CCHHHHHHHHHHHHHHh------------
Q 007520 419 --NEMN---------------QGLIMSRGGGQLLAKTASKT----------DDPQTLRMVAGALANLC------------ 459 (600)
Q Consensus 419 --~~~~---------------r~~I~~~G~I~~Lv~lL~~~----------~~~~v~~~Aa~aL~nLa------------ 459 (600)
.+.+ +.+|.+.+++..++..+... .+..+.+.++..++|+.
T Consensus 81 ~~~~~~~~~~~~~l~~~l~~yK~afl~~~~l~~~~~~l~~~l~~~~~~rt~~d~~ii~lvL~LiRNlL~Ip~~~~~~~~~ 160 (266)
T PF04821_consen 81 QPKDKNQRRNIPELLKYLQSYKEAFLDPRVLKALIRLLLPPLEKDWEDRTERDNLIIELVLTLIRNLLAIPDPPSASKRS 160 (266)
T ss_pred CCCChHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcccccCCHHHHHHHHHHHHHHHHHhcCCCCccccccc
Q ss_pred -----CCchhHHHHHHcChHHHHHHHHcCC-CHHHHHHHHHHHHHhhcC
Q 007520 460 -----GNEKLHTMLEEDGAIKALLAMVRSG-NIDVIAQVARGLANFAKC 502 (600)
Q Consensus 460 -----~~~e~r~~i~~~G~i~~Lv~lL~s~-~~~v~~~A~~aL~nLa~~ 502 (600)
..+..-..+...|+...|+.+..+. ........+.++..|-.+
T Consensus 161 ~~~~~~~d~li~~l~~~~v~~lLL~l~s~~~~~~f~~~lLEIi~ll~k~ 209 (266)
T PF04821_consen 161 DEDSSLHDQLIWALFESGVLDLLLTLASSPQESDFNLLLLEIIYLLFKG 209 (266)
T ss_pred chhHHHHHHHHHHHHHcCHHHHHHHHHhCccccchhhHHHHHHHHHHcC
Done!