Query 007520
Match_columns 600
No_of_seqs 285 out of 2035
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 03:48:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007520.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007520hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3nmw_A APC variant protein; AR 100.0 9.5E-29 3.3E-33 261.9 23.0 259 324-592 47-333 (354)
2 1xm9_A Plakophilin 1; armadill 100.0 2E-27 6.9E-32 259.9 29.2 275 310-590 3-403 (457)
3 3now_A UNC-45 protein, SD10334 100.0 6.5E-28 2.2E-32 277.7 21.8 278 306-592 492-781 (810)
4 3nmz_A APC variant protein; pr 100.0 2.2E-27 7.6E-32 259.0 23.8 252 328-589 167-446 (458)
5 3l6x_A Catenin delta-1; cateni 100.0 1.6E-26 5.6E-31 258.1 28.7 282 306-589 45-428 (584)
6 3nmw_A APC variant protein; AR 99.9 7.9E-27 2.7E-31 247.1 20.4 241 306-554 70-337 (354)
7 3tpo_A Importin subunit alpha- 99.9 6.4E-26 2.2E-30 252.2 28.0 275 306-590 116-446 (529)
8 1xm9_A Plakophilin 1; armadill 99.9 3.9E-26 1.3E-30 249.8 25.2 275 306-591 41-447 (457)
9 3now_A UNC-45 protein, SD10334 99.9 2.6E-26 8.8E-31 264.5 23.8 272 306-588 418-732 (810)
10 4hxt_A De novo protein OR329; 99.9 4.5E-25 1.5E-29 218.3 27.1 234 347-591 2-239 (252)
11 3ul1_B Importin subunit alpha- 99.9 3.6E-25 1.2E-29 245.2 26.6 273 306-588 97-382 (510)
12 3nmz_A APC variant protein; pr 99.9 7.5E-26 2.6E-30 247.0 20.7 241 306-554 186-453 (458)
13 4hxt_A De novo protein OR329; 99.9 7.9E-25 2.7E-29 216.6 25.4 236 309-554 2-244 (252)
14 3l6x_A Catenin delta-1; cateni 99.9 3.1E-25 1E-29 247.8 23.9 273 306-589 87-472 (584)
15 4db8_A Armadillo-repeat protei 99.9 5.4E-25 1.8E-29 219.2 22.2 236 306-551 9-251 (252)
16 3tpo_A Importin subunit alpha- 99.9 3.8E-24 1.3E-28 237.9 29.2 271 308-588 75-401 (529)
17 4b8j_A Importin subunit alpha- 99.9 3.9E-24 1.3E-28 236.6 28.1 274 306-589 114-396 (528)
18 4db8_A Armadillo-repeat protei 99.9 2.4E-24 8.3E-29 214.5 23.6 234 347-591 12-249 (252)
19 3ul1_B Importin subunit alpha- 99.9 1.8E-24 6.3E-29 239.5 24.5 272 308-589 56-341 (510)
20 4b8j_A Importin subunit alpha- 99.9 6E-24 2.1E-28 235.1 28.5 274 308-590 73-355 (528)
21 1wa5_B Importin alpha subunit; 99.9 4.9E-23 1.7E-27 228.2 29.4 273 306-589 127-408 (530)
22 2jdq_A Importin alpha-1 subuni 99.9 1.6E-22 5.4E-27 217.4 28.6 273 306-589 60-343 (450)
23 4db6_A Armadillo repeat protei 99.9 1E-22 3.5E-27 197.3 24.0 199 343-551 8-209 (210)
24 1wa5_B Importin alpha subunit; 99.9 3.2E-22 1.1E-26 221.6 29.7 274 307-591 85-368 (530)
25 1jdh_A Beta-catenin; beta-cate 99.9 4.8E-23 1.6E-27 226.3 22.7 272 308-591 58-337 (529)
26 1jdh_A Beta-catenin; beta-cate 99.9 3E-23 1E-27 227.9 20.7 273 306-590 224-527 (529)
27 2jdq_A Importin alpha-1 subuni 99.9 2.8E-22 9.7E-27 215.4 27.0 272 306-589 104-386 (450)
28 3tt9_A Plakophilin-2; cell adh 99.9 4.3E-23 1.5E-27 205.7 17.0 195 348-552 9-230 (233)
29 2z6h_A Catenin beta-1, beta-ca 99.9 3.8E-22 1.3E-26 226.8 23.8 272 308-591 55-334 (644)
30 2z6h_A Catenin beta-1, beta-ca 99.9 1.4E-21 4.9E-26 222.0 25.2 274 306-590 95-379 (644)
31 3tt9_A Plakophilin-2; cell adh 99.9 6E-22 2E-26 197.4 17.5 193 309-502 8-230 (233)
32 4db6_A Armadillo repeat protei 99.9 1.2E-20 4.2E-25 182.6 23.3 194 386-590 10-206 (210)
33 2z6g_A B-catenin; FULL-length, 99.9 3E-21 1E-25 224.4 22.5 273 306-590 357-660 (780)
34 1xqr_A HSPBP1 protein; armadil 99.9 1.6E-20 5.5E-25 194.0 24.5 221 361-590 54-284 (296)
35 2z6g_A B-catenin; FULL-length, 99.9 6.8E-21 2.3E-25 221.4 22.2 273 308-592 191-471 (780)
36 3opb_A SWI5-dependent HO expre 99.8 1.4E-20 4.8E-25 213.6 17.0 265 306-579 454-763 (778)
37 1xqr_A HSPBP1 protein; armadil 99.8 1.1E-19 3.7E-24 187.8 21.5 178 325-503 56-240 (296)
38 3opb_A SWI5-dependent HO expre 99.8 1.6E-19 5.3E-24 205.1 18.2 242 339-588 449-723 (778)
39 3grl_A General vesicular trans 99.4 5.7E-12 1.9E-16 140.1 22.1 321 258-588 16-389 (651)
40 3grl_A General vesicular trans 99.4 9.7E-12 3.3E-16 138.3 19.7 280 306-596 18-349 (651)
41 1oyz_A Hypothetical protein YI 99.3 4.4E-11 1.5E-15 120.8 17.2 200 306-550 20-220 (280)
42 3ltm_A Alpha-REP4; protein eng 99.3 3.1E-10 1.1E-14 109.5 21.8 186 346-593 18-203 (211)
43 3ltj_A Alpharep-4; protein eng 99.3 3E-10 1E-14 108.8 19.9 187 346-594 13-199 (201)
44 3ltm_A Alpha-REP4; protein eng 99.2 2.1E-10 7.1E-15 110.8 16.8 191 306-554 16-206 (211)
45 1oyz_A Hypothetical protein YI 99.2 8.5E-10 2.9E-14 111.3 21.8 201 342-591 18-219 (280)
46 3ltj_A Alpharep-4; protein eng 99.2 3E-10 1E-14 108.9 16.2 187 306-550 11-197 (201)
47 4gmo_A Putative uncharacterize 99.1 1.5E-10 5.1E-15 132.5 13.0 195 347-550 34-257 (684)
48 4gmo_A Putative uncharacterize 98.9 1.1E-08 3.6E-13 117.2 13.3 166 389-564 35-228 (684)
49 4fdd_A Transportin-1; heat rep 98.7 3.8E-08 1.3E-12 114.8 12.7 268 307-589 172-467 (852)
50 1b3u_A Protein (protein phosph 98.7 2.9E-07 9.9E-12 101.4 17.7 261 308-591 323-585 (588)
51 4fdd_A Transportin-1; heat rep 98.7 1.3E-07 4.6E-12 110.2 15.1 267 308-590 127-426 (852)
52 1b3u_A Protein (protein phosph 98.6 2.1E-07 7.1E-12 102.6 14.9 223 308-550 202-430 (588)
53 1w63_A Adapter-related protein 98.6 2.1E-06 7.2E-11 96.9 23.3 334 206-585 12-406 (618)
54 2vgl_B AP-2 complex subunit be 98.6 3.8E-06 1.3E-10 94.2 24.9 268 311-594 88-424 (591)
55 2vgl_B AP-2 complex subunit be 98.6 1.4E-06 4.7E-11 97.8 18.6 247 310-588 50-306 (591)
56 3b2a_A TON_1937, putative unch 98.3 4.7E-05 1.6E-09 74.4 20.1 217 348-586 34-254 (265)
57 1ibr_B P95, importin beta-1 su 98.3 1.6E-06 5.6E-11 92.3 10.9 265 308-589 127-433 (462)
58 2qk2_A LP04448P; mini spindles 98.3 9.3E-06 3.2E-10 80.0 15.3 183 351-552 19-206 (242)
59 1ibr_B P95, importin beta-1 su 98.2 3.6E-06 1.2E-10 89.6 11.4 233 307-552 170-438 (462)
60 1deb_A APC protein, adenomatou 98.1 5.8E-06 2E-10 59.7 5.9 51 104-189 4-54 (54)
61 1qgr_A Protein (importin beta 98.1 5.9E-05 2E-09 87.2 17.8 266 307-588 170-474 (876)
62 1te4_A Conserved protein MTH18 98.1 4.8E-07 1.6E-11 80.9 0.1 86 390-497 44-129 (131)
63 2bpt_A Importin beta-1 subunit 98.1 6.9E-05 2.4E-09 86.4 17.7 263 311-588 226-524 (861)
64 1w63_A Adapter-related protein 98.0 0.00013 4.5E-09 82.2 19.1 141 349-504 109-266 (618)
65 1te4_A Conserved protein MTH18 98.0 7.6E-07 2.6E-11 79.6 -0.2 119 388-548 12-130 (131)
66 1qgr_A Protein (importin beta 98.0 0.00014 4.9E-09 83.9 18.6 263 308-589 127-433 (876)
67 4ady_A RPN2, 26S proteasome re 97.9 0.00062 2.1E-08 79.3 22.6 196 349-588 474-671 (963)
68 2vgl_A Adaptor protein complex 97.9 0.00061 2.1E-08 76.8 22.2 214 311-552 113-359 (621)
69 1ho8_A Vacuolar ATP synthase s 97.9 0.00014 4.8E-09 78.5 15.7 209 333-550 195-475 (480)
70 2bpt_A Importin beta-1 subunit 97.9 0.00041 1.4E-08 79.9 20.6 263 308-587 178-476 (861)
71 1u6g_C TIP120 protein, CAND1; 97.8 2.7E-05 9.3E-10 94.3 9.3 257 310-588 7-279 (1230)
72 2db0_A 253AA long hypothetical 97.8 0.0016 5.3E-08 61.5 18.8 187 345-560 30-219 (253)
73 2qk1_A Protein STU2; STU2P, XM 97.7 0.00044 1.5E-08 68.9 14.0 190 352-551 21-220 (249)
74 3dad_A FH1/FH2 domain-containi 97.6 0.0032 1.1E-07 64.9 19.6 189 349-541 120-326 (339)
75 2qk2_A LP04448P; mini spindles 97.6 0.0006 2.1E-08 66.9 13.9 177 313-502 19-206 (242)
76 1c1g_A Tropomyosin; contractIl 97.6 0.057 2E-06 52.6 34.5 7 8-14 3-9 (284)
77 1u6g_C TIP120 protein, CAND1; 97.6 0.00032 1.1E-08 84.9 13.3 208 349-574 8-224 (1230)
78 2vgl_A Adaptor protein complex 97.6 0.0018 6.1E-08 73.0 18.5 238 307-576 144-417 (621)
79 1ho8_A Vacuolar ATP synthase s 97.4 0.0058 2E-07 65.9 19.2 235 352-588 172-471 (480)
80 3b2a_A TON_1937, putative unch 97.3 0.0089 3.1E-07 58.5 17.3 180 308-502 32-219 (265)
81 4ady_A RPN2, 26S proteasome re 97.3 0.0075 2.6E-07 70.3 19.5 137 390-549 579-717 (963)
82 3tjz_B Coatomer subunit gamma; 97.2 0.00042 1.4E-08 72.7 7.4 240 310-588 105-348 (355)
83 3dad_A FH1/FH2 domain-containi 97.2 0.017 5.7E-07 59.6 19.0 183 391-575 121-317 (339)
84 2qk1_A Protein STU2; STU2P, XM 97.2 0.0039 1.3E-07 62.0 13.2 149 349-502 62-221 (249)
85 2iw3_A Elongation factor 3A; a 97.1 0.023 8E-07 66.8 20.6 218 347-590 95-321 (986)
86 2db0_A 253AA long hypothetical 96.7 0.062 2.1E-06 50.8 16.3 175 387-590 31-207 (253)
87 3tjz_B Coatomer subunit gamma; 96.7 0.1 3.4E-06 54.6 19.9 138 390-553 70-207 (355)
88 2v71_A Nuclear distribution pr 96.7 0.16 5.3E-06 48.0 19.0 156 10-186 9-174 (189)
89 1upk_A MO25 protein; transfera 96.2 0.24 8.2E-06 51.0 18.4 245 341-592 72-334 (341)
90 3ebb_A Phospholipase A2-activa 95.7 0.31 1E-05 49.8 16.9 145 437-589 154-302 (304)
91 3na7_A HP0958; flagellar bioge 95.6 0.57 2E-05 46.5 18.2 39 103-141 90-128 (256)
92 3ebb_A Phospholipase A2-activa 95.4 0.78 2.7E-05 46.7 18.5 184 349-545 105-300 (304)
93 2v71_A Nuclear distribution pr 95.3 2 7E-05 40.4 20.4 103 23-133 9-111 (189)
94 3m48_A General control protein 95.2 0.017 5.8E-07 38.1 3.3 31 105-135 2-32 (33)
95 2f31_A Diaphanous protein homo 95.0 0.43 1.5E-05 46.6 14.5 158 381-542 37-219 (233)
96 3eg5_B Protein diaphanous homo 94.9 0.5 1.7E-05 49.8 15.9 156 382-541 104-284 (383)
97 3ol1_A Vimentin; structural ge 94.9 0.28 9.7E-06 42.9 11.5 33 100-132 17-49 (119)
98 1kd8_B GABH BLL, GCN4 acid bas 94.8 0.037 1.2E-06 37.1 4.1 33 104-136 2-34 (36)
99 3o0z_A RHO-associated protein 94.7 2.6 8.7E-05 38.9 18.5 94 173-279 62-159 (168)
100 1upk_A MO25 protein; transfera 94.7 1.3 4.4E-05 45.6 17.6 197 383-589 73-279 (341)
101 2fv2_A RCD1 required for cell 94.6 0.71 2.4E-05 45.7 14.7 152 407-561 74-234 (268)
102 4ffb_C Protein STU2; tubulin f 94.5 0.42 1.4E-05 47.4 13.4 186 352-551 14-212 (278)
103 3c3f_A Alpha/beta peptide with 94.5 0.044 1.5E-06 36.2 3.9 32 104-135 2-33 (34)
104 1uo4_A General control protein 94.4 0.037 1.3E-06 36.7 3.5 31 105-135 3-33 (34)
105 1kd8_A GABH AIV, GCN4 acid bas 94.4 0.033 1.1E-06 37.3 3.2 31 104-134 2-32 (36)
106 2iw3_A Elongation factor 3A; a 94.4 0.98 3.4E-05 53.2 17.8 214 347-585 54-273 (986)
107 2dfs_A Myosin-5A; myosin-V, in 94.3 0.54 1.8E-05 56.1 15.6 41 90-130 1003-1043(1080)
108 2oxj_A Hybrid alpha/beta pepti 94.2 0.052 1.8E-06 35.9 3.7 31 104-134 2-32 (34)
109 3c3g_A Alpha/beta peptide with 94.1 0.07 2.4E-06 35.1 4.2 31 105-135 2-32 (33)
110 2bni_A General control protein 94.0 0.051 1.8E-06 36.0 3.4 32 104-135 2-33 (34)
111 3c2g_A SYS-1 protein; beta-cat 93.7 0.82 2.8E-05 47.2 13.4 109 371-481 266-376 (619)
112 2fv2_A RCD1 required for cell 93.7 0.63 2.1E-05 46.1 12.2 162 333-499 83-266 (268)
113 2f31_A Diaphanous protein homo 93.5 1.9 6.7E-05 41.9 15.7 157 333-491 29-218 (233)
114 4ffb_C Protein STU2; tubulin f 93.5 1.4 4.9E-05 43.5 15.1 146 350-502 58-213 (278)
115 2bnx_A Diaphanous protein homo 93.5 1.2 4.1E-05 46.9 15.1 156 382-541 42-222 (386)
116 2hy6_A General control protein 93.3 0.085 2.9E-06 34.9 3.5 30 105-134 3-32 (34)
117 3vkg_A Dynein heavy chain, cyt 93.2 2.2 7.6E-05 56.0 19.5 177 17-213 1917-2107(3245)
118 3tnu_A Keratin, type I cytoske 93.1 1 3.4E-05 40.0 11.8 68 53-128 35-102 (131)
119 3oc3_A Helicase MOT1, MOT1; re 93.0 0.2 6.7E-06 55.0 7.9 188 361-589 242-432 (800)
120 1deq_A Fibrinogen (alpha chain 92.9 2.1 7E-05 44.3 15.0 106 26-135 54-159 (390)
121 3tnu_B Keratin, type II cytosk 92.9 1.3 4.3E-05 39.3 12.0 68 53-128 33-100 (129)
122 2efr_A General control protein 92.9 5.5 0.00019 36.3 19.3 40 174-213 71-110 (155)
123 3eg5_B Protein diaphanous homo 92.9 2.4 8.3E-05 44.5 16.3 155 333-490 95-283 (383)
124 2bnx_A Diaphanous protein homo 92.8 2.9 9.8E-05 44.0 16.8 156 333-491 33-222 (386)
125 2wq1_A General control protein 92.7 0.16 5.4E-06 33.4 4.1 30 105-134 2-31 (33)
126 1lrv_A LRV, leucine-rich repea 92.4 0.12 4.1E-06 51.1 5.1 45 349-411 76-120 (244)
127 2r2v_A GCN4 leucine zipper; co 92.3 0.21 7E-06 33.2 4.4 30 105-134 3-32 (34)
128 3ol1_A Vimentin; structural ge 92.3 2.7 9.2E-05 36.6 13.1 91 15-131 18-115 (119)
129 3c2g_A SYS-1 protein; beta-cat 92.0 0.63 2.2E-05 48.0 9.7 122 336-458 272-401 (619)
130 2of3_A ZYG-9; multifunctional 92.0 3.9 0.00013 40.7 15.6 174 351-550 50-235 (266)
131 2ocy_A RAB guanine nucleotide 91.8 7.4 0.00025 35.3 17.5 32 174-205 52-83 (154)
132 2dfs_A Myosin-5A; myosin-V, in 91.5 3.5 0.00012 49.1 17.1 19 45-63 924-942 (1080)
133 1wa5_C Importin alpha RE-expor 91.4 2.3 7.9E-05 49.8 15.5 134 362-501 376-525 (960)
134 2efr_A General control protein 91.1 8.8 0.0003 34.9 17.7 76 75-150 46-131 (155)
135 3u0r_A Apoptosis inhibitor 5; 90.9 4.3 0.00015 43.7 15.3 121 401-549 40-161 (507)
136 1wa5_C Importin alpha RE-expor 90.5 4.8 0.00016 47.1 17.0 181 354-549 462-668 (960)
137 3ghg_A Fibrinogen alpha chain; 90.4 1.9 6.6E-05 46.2 11.9 113 25-141 50-162 (562)
138 2eqb_B RAB guanine nucleotide 90.3 4.6 0.00016 33.7 11.8 56 20-83 15-70 (97)
139 2v66_B Nuclear distribution pr 89.8 8.8 0.0003 32.9 14.1 76 66-141 16-94 (111)
140 3oja_B Anopheles plasmodium-re 89.4 1.6 5.5E-05 48.2 11.2 25 124-148 544-568 (597)
141 1m1j_A Fibrinogen alpha subuni 89.2 5.8 0.0002 41.9 14.1 113 25-141 51-163 (491)
142 4hat_C Exportin-1; heat repeat 89.0 2 6.9E-05 51.0 12.2 139 401-552 465-619 (1023)
143 3l9t_A Putative uncharacterize 88.9 4.2 0.00014 39.8 12.2 143 391-561 73-218 (240)
144 1lrv_A LRV, leucine-rich repea 88.7 0.31 1.1E-05 48.1 4.3 54 381-453 67-120 (244)
145 3mq9_A Bone marrow stromal ant 88.5 4.6 0.00016 43.2 13.7 100 14-136 370-469 (471)
146 2x19_B Importin-13; nuclear tr 88.3 5.7 0.00019 46.1 15.4 136 400-552 460-600 (963)
147 3tnu_B Keratin, type II cytosk 87.8 6.4 0.00022 34.6 11.9 67 224-293 60-126 (129)
148 3swk_A Vimentin; cytoskeleton, 87.4 2.7 9.3E-05 34.4 8.5 33 181-213 29-61 (86)
149 4hat_C Exportin-1; heat repeat 87.4 2.4 8.1E-05 50.4 11.4 141 359-504 465-621 (1023)
150 3mq7_A Bone marrow stromal ant 86.9 11 0.00039 32.2 12.1 86 27-128 15-103 (121)
151 3s4r_A Vimentin; alpha-helix, 86.9 8 0.00027 32.1 11.1 65 109-210 22-86 (93)
152 2x1g_F Cadmus; transport prote 85.5 16 0.00055 42.5 17.2 167 362-551 436-615 (971)
153 3swk_A Vimentin; cytoskeleton, 85.2 11 0.00037 30.8 11.0 72 20-117 3-77 (86)
154 3tnu_A Keratin, type I cytoske 84.6 6.9 0.00024 34.5 10.4 67 224-293 62-128 (131)
155 1lsh_A Lipovitellin (LV-1N, LV 84.4 3.5 0.00012 49.1 10.9 140 390-559 393-551 (1056)
156 3l9t_A Putative uncharacterize 84.3 11 0.00036 36.9 12.2 145 342-506 62-212 (240)
157 3m1i_C Exportin-1; heat repeat 84.1 7.4 0.00025 46.0 13.6 135 363-502 429-570 (1049)
158 3vkg_A Dynein heavy chain, cyt 84.0 1.3E+02 0.0043 40.1 26.1 27 50-80 1928-1954(3245)
159 1deb_A APC protein, adenomatou 83.9 4.4 0.00015 29.3 6.9 46 224-269 6-51 (54)
160 2dgc_A Protein (GCN4); basic d 83.9 1.9 6.6E-05 33.2 5.5 38 98-135 25-62 (63)
161 3oja_B Anopheles plasmodium-re 83.6 15 0.0005 40.3 14.9 12 178-189 570-581 (597)
162 2ocy_A RAB guanine nucleotide 83.6 25 0.00087 31.8 17.2 38 174-211 109-146 (154)
163 2of3_A ZYG-9; multifunctional 83.1 14 0.00047 36.7 12.9 127 443-589 99-232 (266)
164 3o0z_A RHO-associated protein 81.5 32 0.0011 31.5 17.0 75 78-152 55-132 (168)
165 2avr_X Adhesion A; antiparalle 81.4 25 0.00084 30.4 12.0 85 16-128 8-93 (119)
166 2x1g_F Cadmus; transport prote 81.1 8.5 0.00029 44.8 12.3 132 359-502 476-616 (971)
167 1x79_B RAB GTPase binding effe 80.8 21 0.00071 30.6 11.3 17 174-190 39-55 (112)
168 2fxo_A Myosin heavy chain, car 80.5 29 0.00099 30.3 14.5 86 169-274 37-122 (129)
169 3gjx_A Exportin-1; transport, 79.9 33 0.0011 40.8 16.8 220 306-551 25-275 (1073)
170 3i00_A HIP-I, huntingtin-inter 79.8 16 0.00054 31.8 10.5 48 22-80 13-60 (120)
171 3u0r_A Apoptosis inhibitor 5; 79.5 18 0.00061 39.0 12.8 121 358-499 39-161 (507)
172 1t2k_D Cyclic-AMP-dependent tr 78.6 4.5 0.00015 30.7 5.9 39 96-134 15-53 (61)
173 3ibv_A Exportin-T; karyopherin 77.9 52 0.0018 38.6 17.7 187 347-551 40-260 (980)
174 3ghg_A Fibrinogen alpha chain; 77.7 36 0.0012 36.6 14.3 22 55-76 52-73 (562)
175 3gjx_A Exportin-1; transport, 77.3 44 0.0015 39.7 16.8 221 349-590 30-272 (1073)
176 2wt7_A Proto-oncogene protein 77.2 5.2 0.00018 30.6 5.9 40 95-134 15-54 (63)
177 1jnm_A Proto-oncogene C-JUN; B 77.0 5.3 0.00018 30.4 5.9 40 96-135 15-54 (62)
178 3m1i_C Exportin-1; heat repeat 76.9 34 0.0012 40.2 15.9 165 401-589 28-220 (1049)
179 1ci6_A Transcription factor AT 75.7 6.3 0.00021 30.2 6.0 42 96-137 16-57 (63)
180 1deq_A Fibrinogen (alpha chain 75.4 25 0.00086 36.3 12.0 98 168-265 55-157 (390)
181 3etw_A Adhesin A; antiparallel 75.3 38 0.0013 29.3 11.5 85 16-128 8-93 (119)
182 2fxo_A Myosin heavy chain, car 74.7 43 0.0015 29.2 13.9 26 108-133 95-120 (129)
183 3gae_A Protein DOA1; UFD3, CDC 72.8 20 0.0007 35.1 10.6 101 400-503 101-219 (253)
184 3oc3_A Helicase MOT1, MOT1; re 72.8 9.7 0.00033 42.0 8.6 139 349-500 265-403 (800)
185 3u59_A Tropomyosin beta chain; 72.6 39 0.0013 28.2 10.8 70 222-291 24-93 (101)
186 3ibv_A Exportin-T; karyopherin 72.6 1.1E+02 0.0036 36.0 18.4 213 358-588 19-255 (980)
187 3u1c_A Tropomyosin alpha-1 cha 72.0 42 0.0014 28.1 10.8 68 223-290 25-92 (101)
188 1m1j_B Fibrinogen beta chain; 71.9 60 0.0021 34.7 14.5 63 35-98 93-155 (464)
189 1lsh_A Lipovitellin (LV-1N, LV 71.9 22 0.00074 42.3 12.4 164 349-553 393-578 (1056)
190 2v66_B Nuclear distribution pr 71.8 13 0.00043 31.9 7.5 53 19-71 37-92 (111)
191 3gae_A Protein DOA1; UFD3, CDC 71.1 12 0.0004 36.9 8.3 101 442-553 101-219 (253)
192 3mov_A Lamin-B1; LMNB1, B-type 70.5 20 0.0007 29.7 8.4 44 85-128 19-62 (95)
193 1gk4_A Vimentin; intermediate 69.9 42 0.0014 27.0 10.7 41 88-128 11-51 (84)
194 3hnw_A Uncharacterized protein 69.7 38 0.0013 30.1 10.6 32 100-131 93-124 (138)
195 3oja_A Leucine-rich immune mol 69.6 41 0.0014 35.8 13.1 52 78-133 414-465 (487)
196 2x19_B Importin-13; nuclear tr 69.1 47 0.0016 38.3 14.4 127 400-550 36-174 (963)
197 1x79_B RAB GTPase binding effe 68.8 55 0.0019 28.0 11.3 89 20-130 9-97 (112)
198 2e7s_A RAB guanine nucleotide 68.7 11 0.00038 33.4 6.6 18 66-83 73-90 (135)
199 3vmx_A Voltage-gated hydrogen 66.7 12 0.0004 27.0 5.1 35 100-134 8-42 (48)
200 1hjb_A Ccaat/enhancer binding 66.6 12 0.0004 30.7 6.0 34 104-137 37-70 (87)
201 1gd2_E Transcription factor PA 66.5 19 0.00066 28.2 7.0 17 50-66 15-31 (70)
202 2e7s_A RAB guanine nucleotide 65.9 45 0.0015 29.5 10.0 33 175-207 98-130 (135)
203 1gu4_A CAAT/enhancer binding p 65.7 13 0.00044 29.8 5.9 33 103-135 36-68 (78)
204 3pst_A Protein DOA1; protein d 65.1 81 0.0028 33.3 13.7 102 442-554 273-392 (425)
205 1x8y_A Lamin A/C; structural p 64.4 22 0.00074 28.9 7.3 45 225-276 39-83 (86)
206 1gk4_A Vimentin; intermediate 64.1 52 0.0018 26.4 9.5 18 259-276 64-81 (84)
207 1x8y_A Lamin A/C; structural p 63.8 42 0.0014 27.1 8.9 41 88-128 13-53 (86)
208 3u59_A Tropomyosin beta chain; 63.6 63 0.0022 26.8 10.4 75 101-210 21-95 (101)
209 2ic6_A Nucleocapsid protein; h 63.6 42 0.0014 26.8 8.4 22 173-194 52-73 (78)
210 1dh3_A Transcription factor CR 63.1 15 0.00053 27.2 5.6 31 104-134 23-53 (55)
211 3k29_A Putative uncharacterize 61.6 96 0.0033 28.3 18.0 84 88-211 40-123 (169)
212 3u1c_A Tropomyosin alpha-1 cha 61.2 71 0.0024 26.6 10.4 75 101-210 21-95 (101)
213 1f5n_A Interferon-induced guan 60.5 1.5E+02 0.0052 32.6 15.5 38 89-129 512-549 (592)
214 1wt6_A Myotonin-protein kinase 60.0 54 0.0018 26.3 8.4 54 74-135 17-70 (81)
215 2k48_A Nucleoprotein; viral pr 58.6 71 0.0024 26.8 9.3 22 173-194 82-103 (107)
216 3qml_C Protein SLS1, nucleotid 57.0 55 0.0019 33.1 10.1 135 361-500 42-188 (315)
217 1go4_E MAD1 (mitotic arrest de 56.4 14 0.00048 31.0 4.8 33 103-135 12-44 (100)
218 2eqb_B RAB guanine nucleotide 55.5 52 0.0018 27.3 8.0 57 223-279 14-70 (97)
219 2efk_A CDC42-interacting prote 54.4 1.6E+02 0.0055 28.6 15.5 52 25-76 99-153 (301)
220 3l3f_X Protein DOA1, DOA1/UFD3 54.4 30 0.001 35.8 8.0 100 442-552 210-327 (362)
221 3hnw_A Uncharacterized protein 54.4 1.1E+02 0.0039 26.9 11.9 24 227-250 74-97 (138)
222 2b9c_A Striated-muscle alpha t 52.3 81 0.0028 28.2 9.5 14 176-189 132-145 (147)
223 3a6p_A Exportin-5; exportin-5, 51.5 3.5E+02 0.012 32.2 18.0 128 359-501 25-162 (1204)
224 3l3f_X Protein DOA1, DOA1/UFD3 51.2 1.1E+02 0.0036 31.7 11.5 131 364-503 180-328 (362)
225 3qh9_A Liprin-beta-2; coiled-c 50.7 64 0.0022 25.8 7.4 15 180-194 54-68 (81)
226 1wt6_A Myotonin-protein kinase 50.1 92 0.0031 24.9 8.3 58 182-252 12-69 (81)
227 3ghg_C Fibrinogen gamma chain; 49.5 80 0.0027 33.2 10.3 46 34-83 30-75 (411)
228 3vp9_A General transcriptional 49.1 20 0.00069 29.6 4.5 70 105-191 16-86 (92)
229 1m1j_B Fibrinogen beta chain; 48.3 2.6E+02 0.009 29.7 14.2 26 90-115 87-112 (464)
230 3pst_A Protein DOA1; protein d 48.3 2.7E+02 0.0091 29.3 15.1 131 364-503 243-391 (425)
231 2b5u_A Colicin E3; high resolu 47.3 2.9E+02 0.01 29.5 16.7 118 29-152 300-448 (551)
232 3s4r_A Vimentin; alpha-helix, 47.2 1.2E+02 0.004 24.9 10.2 36 99-134 52-87 (93)
233 2ic9_A Nucleocapsid protein; h 46.4 85 0.0029 26.0 7.8 22 173-194 52-73 (96)
234 2ke4_A CDC42-interacting prote 45.2 65 0.0022 26.8 7.2 28 14-41 7-39 (98)
235 1m1j_C Fibrinogen gamma chain; 45.1 2.4E+02 0.0083 29.5 13.3 40 90-133 25-64 (409)
236 3vp9_A General transcriptional 44.7 76 0.0026 26.1 7.3 7 9-15 19-25 (92)
237 2efl_A Formin-binding protein 44.2 2.3E+02 0.0079 27.4 15.8 14 28-41 109-122 (305)
238 3mxz_A Tubulin-specific chaper 44.0 1.5E+02 0.0052 25.3 11.0 93 113-216 18-110 (116)
239 3s9g_A Protein hexim1; cyclin 43.7 65 0.0022 26.7 6.7 42 19-75 39-80 (104)
240 3cve_A Homer protein homolog 1 43.5 1.2E+02 0.004 23.8 8.2 33 107-139 4-36 (72)
241 3iox_A AGI/II, PA; alpha helix 43.1 3.2E+02 0.011 29.2 13.7 33 24-56 9-41 (497)
242 4dvg_B Diaphanous protein; cyt 42.3 2.2E+02 0.0075 26.7 14.5 181 390-572 68-277 (353)
243 3vem_A Helicase protein MOM1; 41.5 1.7E+02 0.0057 25.0 9.7 25 88-112 64-88 (115)
244 3i00_A HIP-I, huntingtin-inter 41.2 1.5E+02 0.0052 25.5 9.2 38 92-129 36-80 (120)
245 1zoq_C CREB-binding protein, i 40.4 19 0.00065 25.5 2.5 34 563-596 1-34 (47)
246 3mq9_A Bone marrow stromal ant 40.0 2.8E+02 0.0095 29.0 13.3 42 71-112 397-438 (471)
247 3cl3_D NF-kappa-B essential mo 39.9 71 0.0024 27.8 6.6 49 65-113 60-111 (130)
248 1t3j_A Mitofusin 1; coiled coi 39.8 1.1E+02 0.0037 25.4 7.5 58 18-101 37-94 (96)
249 3nmd_A CGMP dependent protein 38.0 91 0.0031 24.4 6.4 37 102-138 32-68 (72)
250 1ic2_A Tropomyosin alpha chain 38.0 1.4E+02 0.0047 23.6 7.9 50 223-272 22-71 (81)
251 3ldz_A STAM-1, signal transduc 37.7 69 0.0023 28.2 6.7 72 472-550 42-113 (140)
252 1vsy_5 Proteasome activator BL 37.5 1.6E+02 0.0054 34.7 11.5 182 349-551 135-365 (997)
253 1mhq_A ADP-ribosylation factor 37.5 98 0.0033 27.5 7.7 73 472-551 38-116 (148)
254 3ghg_B Fibrinogen beta chain; 37.4 3E+02 0.01 29.2 12.5 46 34-83 87-132 (461)
255 3mov_A Lamin-B1; LMNB1, B-type 36.7 1.1E+02 0.0037 25.3 7.2 16 260-275 76-91 (95)
256 1m1j_C Fibrinogen gamma chain; 36.5 71 0.0024 33.6 7.5 29 35-63 31-59 (409)
257 1cii_A Colicin IA; bacteriocin 36.3 2.7E+02 0.0091 29.6 11.4 37 30-66 334-373 (602)
258 3ghg_B Fibrinogen beta chain; 35.5 2.9E+02 0.0098 29.3 11.9 25 89-113 81-105 (461)
259 1x5b_A Signal transducing adap 35.4 97 0.0033 28.0 7.4 71 473-550 53-124 (163)
260 2p2u_A HOST-nuclease inhibitor 35.2 1.2E+02 0.0042 27.6 8.1 33 96-128 45-77 (171)
261 1x5b_A Signal transducing adap 34.3 58 0.002 29.6 5.7 69 349-417 54-124 (163)
262 2xus_A Breast cancer metastasi 34.3 94 0.0032 22.5 5.5 22 45-66 2-23 (49)
263 3caz_A BAR protein; thermo-aci 34.1 2.9E+02 0.0099 25.6 11.2 19 101-119 127-145 (294)
264 3g2s_A C-terminal fragment of 32.8 1.3E+02 0.0044 26.9 7.7 72 473-551 49-126 (149)
265 2wuj_A Septum site-determining 32.4 47 0.0016 24.7 3.9 33 100-132 24-56 (57)
266 1h7c_A Tubulin-specific chaper 32.4 2.3E+02 0.0077 23.9 9.2 42 168-211 61-102 (108)
267 2xpp_A IWS1, ECU08_0440; trans 32.4 2E+02 0.007 25.5 8.8 82 457-550 46-135 (145)
268 3zyq_A Hepatocyte growth facto 31.8 52 0.0018 31.5 5.2 70 349-418 47-118 (226)
269 3a6p_A Exportin-5; exportin-5, 30.4 3.6E+02 0.012 32.1 13.4 132 395-550 19-161 (1204)
270 1juq_A ADP-ribosylation factor 30.0 1.3E+02 0.0046 27.3 7.5 72 473-551 51-128 (171)
271 2zqm_A Prefoldin beta subunit 29.4 2.4E+02 0.0083 23.3 10.5 43 86-128 67-109 (117)
272 3ldz_A STAM-1, signal transduc 29.2 1.1E+02 0.0037 26.9 6.5 68 432-500 44-113 (140)
273 2z5i_A TM, general control pro 27.8 89 0.003 22.8 4.6 41 108-148 3-43 (52)
274 3htk_A Structural maintenance 27.4 1.8E+02 0.0062 21.2 7.1 46 104-149 6-51 (60)
275 3g2s_A C-terminal fragment of 27.2 97 0.0033 27.7 5.8 71 348-418 49-126 (149)
276 2xv5_A Lamin-A/C; structural p 26.8 2E+02 0.0068 22.5 6.8 44 225-275 16-59 (74)
277 3onj_A T-snare VTI1; helix, HA 26.6 2.6E+02 0.009 22.8 8.6 13 51-63 36-48 (97)
278 3vld_A DNA mismatch repair pro 26.6 3.9E+02 0.013 28.7 11.1 132 360-501 92-225 (500)
279 2k48_A Nucleoprotein; viral pr 25.7 2.3E+02 0.0078 23.8 7.2 38 168-205 37-74 (107)
280 3cl3_D NF-kappa-B essential mo 24.9 1.7E+02 0.0058 25.4 6.5 60 51-118 11-70 (130)
281 1gk7_A Vimentin; intermediate 24.5 1.3E+02 0.0045 20.6 4.7 18 110-127 20-37 (39)
282 3ghg_C Fibrinogen gamma chain; 24.4 6.2E+02 0.021 26.4 13.6 26 90-115 25-50 (411)
283 3zyq_A Hepatocyte growth facto 24.3 1.1E+02 0.0037 29.2 6.0 67 523-589 46-114 (226)
284 1mhq_A ADP-ribosylation factor 24.1 1E+02 0.0035 27.4 5.4 71 348-418 39-116 (148)
285 1f5n_A Interferon-induced guan 24.1 7.3E+02 0.025 27.1 19.9 34 102-135 486-519 (592)
286 3a7p_A Autophagy protein 16; c 24.0 3.9E+02 0.013 23.9 10.2 11 98-108 19-29 (152)
287 3bas_A Myosin heavy chain, str 23.3 2.9E+02 0.01 22.2 11.2 29 105-133 58-86 (89)
288 3o2t_A Symplekin; heat repeat, 22.9 1.6E+02 0.0055 30.6 7.3 65 472-549 63-127 (386)
289 4gkw_A Spindle assembly abnorm 22.8 3.8E+02 0.013 23.3 16.0 79 102-194 45-133 (167)
290 1uii_A Geminin; human, DNA rep 22.6 2.7E+02 0.0094 22.3 6.9 48 88-135 31-78 (83)
291 3iv1_A Tumor susceptibility ge 22.5 2.9E+02 0.01 21.9 7.0 26 225-250 43-68 (78)
292 3vem_A Helicase protein MOM1; 22.4 3.6E+02 0.012 22.9 9.2 48 22-83 37-84 (115)
293 1juq_A ADP-ribosylation factor 22.4 1.2E+02 0.004 27.7 5.5 67 523-589 51-124 (171)
294 1vsy_4 Proteasome activator BL 22.3 4.3E+02 0.015 30.1 11.4 113 380-501 332-455 (799)
295 3gs3_A Symplekin, LD45768P; he 22.2 1.9E+02 0.0064 28.2 7.3 64 473-549 54-117 (257)
296 3bas_A Myosin heavy chain, str 22.2 3.1E+02 0.011 22.0 10.3 32 174-205 15-46 (89)
297 2yy0_A C-MYC-binding protein; 21.9 1.5E+02 0.005 21.7 4.9 34 218-251 16-49 (53)
298 1m1j_A Fibrinogen alpha subuni 21.9 7.2E+02 0.025 26.2 12.6 23 55-77 53-75 (491)
299 3viq_B Mating-type switching p 21.6 3.1E+02 0.011 22.1 7.1 29 106-134 4-32 (85)
300 3m91_A Proteasome-associated A 21.5 2.1E+02 0.0072 20.8 5.5 32 21-63 13-44 (51)
301 3he5_A Synzip1; heterodimeric 21.4 2E+02 0.007 19.7 5.6 21 18-38 4-24 (49)
302 2jee_A YIIU; FTSZ, septum, coi 21.4 3.2E+02 0.011 21.9 7.6 36 223-258 8-43 (81)
303 1l8d_A DNA double-strand break 21.2 3.4E+02 0.012 22.2 11.3 36 99-134 67-102 (112)
304 2i1j_A Moesin; FERM, coiled-co 21.2 1E+02 0.0034 33.9 5.6 144 27-175 312-463 (575)
305 2ic6_A Nucleocapsid protein; h 20.9 3.2E+02 0.011 21.7 7.5 37 169-205 8-44 (78)
306 2xpp_A IWS1, ECU08_0440; trans 20.9 2.8E+02 0.0095 24.6 7.5 74 513-589 52-132 (145)
307 4atg_A TAF6; transcription, TF 20.8 5.1E+02 0.017 24.1 10.6 138 369-532 27-178 (196)
308 3q8t_A Beclin-1; autophagy, AT 20.8 3.5E+02 0.012 22.1 12.4 92 103-208 4-95 (96)
309 3nfq_A Transcription factor IW 20.6 4.9E+02 0.017 23.7 10.1 82 458-551 62-151 (170)
No 1
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.96 E-value=9.5e-29 Score=261.87 Aligned_cols=259 Identities=20% Similarity=0.187 Sum_probs=221.5
Q ss_pred cccchHHHH---hhcCchhHHHHHhcCCHHHHHHhhCC-----------CCHHHHHHHHHHHHHhhCCc-chHHHHHHcC
Q 007520 324 LQKSNPSRE---LSGQRATIAKICDEVGLPKILQLLTS-----------EDPDVQIHAVKVVANLAAED-INQEKIVEEG 388 (600)
Q Consensus 324 ~~r~~a~~~---L~~~~~~~~~i~e~GgV~~Lv~LL~s-----------~~~~vr~~Aa~aL~nLa~~~-~~~~~iv~~G 388 (600)
.....|+++ ++.+++++..+++.||+++|+.+|.+ .++.++..|+++|.||+.++ .++..+...|
T Consensus 47 ~~~~~A~~aL~nls~d~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~ 126 (354)
T 3nmw_A 47 HQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMK 126 (354)
T ss_dssp GTHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcC
Confidence 444455554 77888899999999999999999942 24779999999999999854 5777776654
Q ss_pred C-HHHHHHHHccCCCHHHHHHHHHHHHHhhcC--CccHHHHHHhCchhhhHhhhccCCCHHHHHHHHHHHHHHhC-Cchh
Q 007520 389 G-LDALLLLLRTSQNTTILRVASGAIANLAMN--EMNQGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLCG-NEKL 464 (600)
Q Consensus 389 ~-I~~Lv~lL~~~~~~~v~~~Al~aL~NLa~~--~~~r~~I~~~G~I~~Lv~lL~~~~~~~v~~~Aa~aL~nLa~-~~e~ 464 (600)
| ||+|+.+|. ++++.++..|+++|+||+.. +.++..|++.|+||+|+.+|..+.++.+++.|+++|+||+. ++++
T Consensus 127 GaIp~LV~LL~-s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~n 205 (354)
T 3nmw_A 127 GCMRALVAQLK-SESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTEN 205 (354)
T ss_dssp HHHHHHHHGGG-CSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred CcHHHHHHHHC-CCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChhh
Confidence 5 999999998 67899999999999999985 57899999999999999987566788999999999999998 7788
Q ss_pred HHHHH-HcChHHHHHHHHcCCCH----HHHHHHHHHHHHhhc---CCchhhhhcchhhHHHHHhCCcHHHHHHhhcCCCH
Q 007520 465 HTMLE-EDGAIKALLAMVRSGNI----DVIAQVARGLANFAK---CESRAIVQGQRKGRSHLMEDSALEWLIANSKTNSA 536 (600)
Q Consensus 465 r~~i~-~~G~i~~Lv~lL~s~~~----~v~~~A~~aL~nLa~---~~~~~~~q~~~~~r~~l~e~g~l~~Lv~Ll~s~~~ 536 (600)
+..++ ..|+++.|+.+|.++++ .++..|+++|+||+. .+ +.++..+.+.|++|.|+.++.+++.
T Consensus 206 k~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~--------~~~~~~i~~~g~i~~Lv~lL~~~~~ 277 (354)
T 3nmw_A 206 KADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATN--------EDHRQILRENNCLQTLLQHLKSHSL 277 (354)
T ss_dssp HHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTC--------HHHHHHHHTTTHHHHHHHHTTCSCH
T ss_pred hHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCC--------HHHHHHHHHcCCHHHHHHHHcCCCh
Confidence 88888 78999999999986554 589999999999996 23 5688889999999999999999999
Q ss_pred HHHHHHHHHHHHhhc-CchhHHHHHHcccHHHHHHhhhcCChHHHHHHHHHHHhcCc
Q 007520 537 STRRHVELALCHLAQ-NEDNARDFISRGGAKELVQISIESSREDIRNLAKKTMKSNP 592 (600)
Q Consensus 537 ~v~~~Aa~aL~nLa~-~~~~~~~lv~~G~l~~Lv~ll~~~~~~~ir~~A~~~L~~~p 592 (600)
.++..|+++|+||+. +++++..+++.|++++|+.++.+++ +.++..|..+|.+..
T Consensus 278 ~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~-~~i~~~A~~aL~nL~ 333 (354)
T 3nmw_A 278 TIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKH-KMIAMGSAAALRNLM 333 (354)
T ss_dssp HHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSS-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCC-HHHHHHHHHHHHHHH
Confidence 999999999999985 6788999999999999999998765 456776665554433
No 2
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=99.96 E-value=2e-27 Score=259.94 Aligned_cols=275 Identities=18% Similarity=0.189 Sum_probs=227.1
Q ss_pred chHHHhcccCCCCccccchHHHH---hhcC-chhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCC-cchHHHH
Q 007520 310 YISKGSSRFGAPMSLQKSNPSRE---LSGQ-RATIAKICDEVGLPKILQLLTSEDPDVQIHAVKVVANLAAE-DINQEKI 384 (600)
Q Consensus 310 ~i~~Lv~~L~s~~~~~r~~a~~~---L~~~-~~~~~~i~e~GgV~~Lv~LL~s~~~~vr~~Aa~aL~nLa~~-~~~~~~i 384 (600)
.+|.++.+++++.+..+..|+.. ++.+ +..+..+++.||||.|+.+|.++++.++..|+++|.||+.+ ++++..|
T Consensus 3 ~l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i 82 (457)
T 1xm9_A 3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLET 82 (457)
T ss_dssp CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHH
T ss_pred CHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 58999999999988888777765 5544 44566899999999999999999999999999999999984 8999999
Q ss_pred HHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcCCccHHHHHHhCchhhhHhhhc--------cC-------CCHHHHH
Q 007520 385 VEEGGLDALLLLLRTSQNTTILRVASGAIANLAMNEMNQGLIMSRGGGQLLAKTAS--------KT-------DDPQTLR 449 (600)
Q Consensus 385 v~~G~I~~Lv~lL~~~~~~~v~~~Al~aL~NLa~~~~~r~~I~~~G~I~~Lv~lL~--------~~-------~~~~v~~ 449 (600)
++.|+||+|+.+|..++++.++..|+++|+||+.+++++..|++ |++|+|+.+|. .. .++.+.+
T Consensus 83 ~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~ 161 (457)
T 1xm9_A 83 RRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFF 161 (457)
T ss_dssp HHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHHHHH
T ss_pred HHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHHHHH
Confidence 99999999999998667889999999999999999999999999 99999999993 11 3567888
Q ss_pred HHHHHHHHHhCCchhHHHHHHc-ChHHHHHHHHcC------C--------------------------------------
Q 007520 450 MVAGALANLCGNEKLHTMLEED-GAIKALLAMVRS------G-------------------------------------- 484 (600)
Q Consensus 450 ~Aa~aL~nLa~~~e~r~~i~~~-G~i~~Lv~lL~s------~-------------------------------------- 484 (600)
.|+|+|+|||.+++++..+++. |+++.|+.+|.+ .
T Consensus 162 ~a~~aL~nLs~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~ 241 (457)
T 1xm9_A 162 NATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAY 241 (457)
T ss_dssp HHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC----
T ss_pred HHHHHHHHHccCHHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhccccccccc
Confidence 9999999999989999999997 999999988752 1
Q ss_pred -------------------------------------------------------CHHHHHHHHHHHHHhhcCCchhhhh
Q 007520 485 -------------------------------------------------------NIDVIAQVARGLANFAKCESRAIVQ 509 (600)
Q Consensus 485 -------------------------------------------------------~~~v~~~A~~aL~nLa~~~~~~~~q 509 (600)
++.+++.|+|+|+||+.++....
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~-- 319 (457)
T 1xm9_A 242 TEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMS-- 319 (457)
T ss_dssp ------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHH--
T ss_pred ccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcch--
Confidence 24455667788888876542211
Q ss_pred cchhh-HHHHHhCCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCchhHHHHHHcccHHHHHHhhhcCCh-----HHHHHH
Q 007520 510 GQRKG-RSHLMEDSALEWLIANSKTNSASTRRHVELALCHLAQNEDNARDFISRGGAKELVQISIESSR-----EDIRNL 583 (600)
Q Consensus 510 ~~~~~-r~~l~e~g~l~~Lv~Ll~s~~~~v~~~Aa~aL~nLa~~~~~~~~lv~~G~l~~Lv~ll~~~~~-----~~ir~~ 583 (600)
... |..+.+.|++|.|+.++.+++..++..|+|+|+||+.++.++.. +..|++++|++++..++. +++...
T Consensus 320 --~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~~~~~~-i~~~~i~~Lv~lL~~~~~~~~~~~~v~~~ 396 (457)
T 1xm9_A 320 --SGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRV-MGNQVFPEVTRLLTSHTGNTSNSEDILSS 396 (457)
T ss_dssp --HHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGGGHHH-HHHHTHHHHHHTTTSCCSCSTTHHHHHHH
T ss_pred --HHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCHHHHHH-HHHhhhHHHHHhccCCCCCCCCcHHHHHH
Confidence 112 44566789999999999999999999999999999998877654 456899999999998643 356666
Q ss_pred HHHHHhc
Q 007520 584 AKKTMKS 590 (600)
Q Consensus 584 A~~~L~~ 590 (600)
+..+|..
T Consensus 397 ~l~~l~n 403 (457)
T 1xm9_A 397 ACYTVRN 403 (457)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6665544
No 3
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.95 E-value=6.5e-28 Score=277.73 Aligned_cols=278 Identities=16% Similarity=0.136 Sum_probs=241.1
Q ss_pred cccCchHHHhcccCCCCccccchHHHH---hhcCchhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCcchHH
Q 007520 306 YTKDYISKGSSRFGAPMSLQKSNPSRE---LSGQRATIAKICDEVGLPKILQLLTSEDPDVQIHAVKVVANLAAEDINQE 382 (600)
Q Consensus 306 ~~~g~i~~Lv~~L~s~~~~~r~~a~~~---L~~~~~~~~~i~e~GgV~~Lv~LL~s~~~~vr~~Aa~aL~nLa~~~~~~~ 382 (600)
++.|++|.|+.+++++++..+..|+++ ++.+.+++..+++.|++|+|+.+|.++++.++..|+++|.||+.+.....
T Consensus 492 veaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~ 571 (810)
T 3now_A 492 ANEGITTALCALAKTESHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEV 571 (810)
T ss_dssp HHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHH
T ss_pred HHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhh
Confidence 678999999999999998888888876 77788899999999999999999999999999999999999986322222
Q ss_pred HH---HHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcC-CccHHHHHHhCchhhhHhhhccCCCHHHHHHHHHHHHHH
Q 007520 383 KI---VEEGGLDALLLLLRTSQNTTILRVASGAIANLAMN-EMNQGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANL 458 (600)
Q Consensus 383 ~i---v~~G~I~~Lv~lL~~~~~~~v~~~Al~aL~NLa~~-~~~r~~I~~~G~I~~Lv~lL~~~~~~~v~~~Aa~aL~nL 458 (600)
.+ ...|++|+|+.+|.++.+...+..|+++|+||+.. ++++..|++.|+++.|+.+|.+ +++.+++.|+++|+||
T Consensus 572 ~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s-~~~~Vq~~A~~~L~NL 650 (810)
T 3now_A 572 SFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLME-DHLYLTRAAAQCLCNL 650 (810)
T ss_dssp HTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHS-CCTTHHHHHHHHHHHH
T ss_pred hhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcC-CCHHHHHHHHHHHHHH
Confidence 11 12468999999998554555566899999999988 6889999999999999999964 6789999999999999
Q ss_pred hCCchhHHHHHH-cChHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchhhhhcchhhHHHHHh-CCcHHHHHHhhcCCCH
Q 007520 459 CGNEKLHTMLEE-DGAIKALLAMVRSGNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLME-DSALEWLIANSKTNSA 536 (600)
Q Consensus 459 a~~~e~r~~i~~-~G~i~~Lv~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~q~~~~~r~~l~e-~g~l~~Lv~Ll~s~~~ 536 (600)
+.+++.+..+++ .|+++.|+.++.+++..++..|+|+|+||+..+ +.....+++ .|++|+|+.++.+++.
T Consensus 651 a~~~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s--------~~~~~~ii~~~g~I~~Lv~LL~s~d~ 722 (810)
T 3now_A 651 VMSEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVS--------VKCCEKILAIASWLDILHTLIANPSP 722 (810)
T ss_dssp TTSHHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHC--------HHHHHHHHTSTTHHHHHHHHHTCSSH
T ss_pred hCChHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCC--------HHHHHHHHHHcCCHHHHHHHHCCCCH
Confidence 999999988886 799999999999999999999999999999743 345556777 8999999999999999
Q ss_pred HHHHHHHHHHHHhhc-CchhHHHHHHcccHHHHHHhhhcC--ChHHHHHHHHHHHhcCc
Q 007520 537 STRRHVELALCHLAQ-NEDNARDFISRGGAKELVQISIES--SREDIRNLAKKTMKSNP 592 (600)
Q Consensus 537 ~v~~~Aa~aL~nLa~-~~~~~~~lv~~G~l~~Lv~ll~~~--~~~~ir~~A~~~L~~~p 592 (600)
.+++.|+|+|+||+. +++.+..+++.|++++|+.+++.+ ....+.+.|..+|....
T Consensus 723 ~vq~~A~~aL~NL~~~s~e~~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~ll 781 (810)
T 3now_A 723 AVQHRGIVIILNMINAGEEIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAAE 781 (810)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHTSTHHHHHTTSCCCTTSTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHhCcccCcHHHHHHHHHHHHHHH
Confidence 999999999999976 466889999999999999999866 35679999998887643
No 4
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=99.95 E-value=2.2e-27 Score=259.04 Aligned_cols=252 Identities=20% Similarity=0.206 Sum_probs=216.8
Q ss_pred hHHHH---hhcCchhHHHHHhcCCHHHHHHhhCC-----------CCHHHHHHHHHHHHHhhCCcc-hHHHHHHc-CCHH
Q 007520 328 NPSRE---LSGQRATIAKICDEVGLPKILQLLTS-----------EDPDVQIHAVKVVANLAAEDI-NQEKIVEE-GGLD 391 (600)
Q Consensus 328 ~a~~~---L~~~~~~~~~i~e~GgV~~Lv~LL~s-----------~~~~vr~~Aa~aL~nLa~~~~-~~~~iv~~-G~I~ 391 (600)
.|+++ ++.++.++..+++.||+++|+.+|.. .++.++..|+++|.||+.+++ ++..+... |+||
T Consensus 167 qAv~aL~nls~~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp 246 (458)
T 3nmz_A 167 PAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMR 246 (458)
T ss_dssp HHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHH
Confidence 45554 77788899999999999999999942 346789999999999998554 67677654 4499
Q ss_pred HHHHHHccCCCHHHHHHHHHHHHHhhcC--CccHHHHHHhCchhhhHhhhccCCCHHHHHHHHHHHHHHhC-CchhHHHH
Q 007520 392 ALLLLLRTSQNTTILRVASGAIANLAMN--EMNQGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLCG-NEKLHTML 468 (600)
Q Consensus 392 ~Lv~lL~~~~~~~v~~~Al~aL~NLa~~--~~~r~~I~~~G~I~~Lv~lL~~~~~~~v~~~Aa~aL~nLa~-~~e~r~~i 468 (600)
+|+.+|. ++++.++..|+++|+||+.. +.++..|++.|+||+|+.+|..+.++.+++.|+++|+||+. +++++..|
T Consensus 247 ~LV~LL~-s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I 325 (458)
T 3nmz_A 247 ALVAQLK-SESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADI 325 (458)
T ss_dssp HHHHGGG-CSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred HHHHHHh-CCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHH
Confidence 9999999 67899999999999999985 57899999999999999987666788999999999999998 78889888
Q ss_pred H-HcChHHHHHHHHcCCCH----HHHHHHHHHHHHhhc---CCchhhhhcchhhHHHHHhCCcHHHHHHhhcCCCHHHHH
Q 007520 469 E-EDGAIKALLAMVRSGNI----DVIAQVARGLANFAK---CESRAIVQGQRKGRSHLMEDSALEWLIANSKTNSASTRR 540 (600)
Q Consensus 469 ~-~~G~i~~Lv~lL~s~~~----~v~~~A~~aL~nLa~---~~~~~~~q~~~~~r~~l~e~g~l~~Lv~Ll~s~~~~v~~ 540 (600)
+ ..|+++.|+.+|.++++ .++..|+++|+||+. .+ +.++..+.+.|++|.|+.++.+++..++.
T Consensus 326 ~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~--------~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~ 397 (458)
T 3nmz_A 326 CAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATN--------EDHRQILRENNCLQTLLQHLKSHSLTIVS 397 (458)
T ss_dssp HHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTC--------HHHHHHHHHTTHHHHHHHHSSCSCHHHHH
T ss_pred HHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCC--------HHHHHHHHHcccHHHHHHHHcCCChHHHH
Confidence 8 78999999999986554 489999999999996 33 56788899999999999999999999999
Q ss_pred HHHHHHHHhh-cCchhHHHHHHcccHHHHHHhhhcCChHHHHHHHHHHHh
Q 007520 541 HVELALCHLA-QNEDNARDFISRGGAKELVQISIESSREDIRNLAKKTMK 589 (600)
Q Consensus 541 ~Aa~aL~nLa-~~~~~~~~lv~~G~l~~Lv~ll~~~~~~~ir~~A~~~L~ 589 (600)
.|+|+|+||+ .+++++..+++.|++++|+.++.+++ +.+++.|..+|.
T Consensus 398 ~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~-~~v~~~Aa~AL~ 446 (458)
T 3nmz_A 398 NACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKH-KMIAMGSAAALR 446 (458)
T ss_dssp HHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTCSS-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhCCC-HHHHHHHHHHHH
Confidence 9999999998 47889999999999999999998765 456666665443
No 5
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=99.95 E-value=1.6e-26 Score=258.10 Aligned_cols=282 Identities=20% Similarity=0.231 Sum_probs=230.5
Q ss_pred cccCchHHHhcccCCCCccccchHHHH---hhc-CchhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhC--Ccc
Q 007520 306 YTKDYISKGSSRFGAPMSLQKSNPSRE---LSG-QRATIAKICDEVGLPKILQLLTSEDPDVQIHAVKVVANLAA--EDI 379 (600)
Q Consensus 306 ~~~g~i~~Lv~~L~s~~~~~r~~a~~~---L~~-~~~~~~~i~e~GgV~~Lv~LL~s~~~~vr~~Aa~aL~nLa~--~~~ 379 (600)
+..+++|.||.+|.++....+..|+.. ++. ++.++..+++.||||+||.+|.++++.++..|+++|+||+. +++
T Consensus 45 ~~~~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~ 124 (584)
T 3l6x_A 45 WRQPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQD 124 (584)
T ss_dssp CCCCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHH
T ss_pred cccccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHH
Confidence 788999999999999988777777765 554 77889999999999999999999999999999999999998 488
Q ss_pred hHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcCCccHHHHHHhCchhhhHhhhc-----------------cC
Q 007520 380 NQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMNEMNQGLIMSRGGGQLLAKTAS-----------------KT 442 (600)
Q Consensus 380 ~~~~iv~~G~I~~Lv~lL~~~~~~~v~~~Al~aL~NLa~~~~~r~~I~~~G~I~~Lv~lL~-----------------~~ 442 (600)
++..|+++|+||+|+.+|.+..+..+++.|+++|+||+.++.++..|++ |++|+|+.++. ..
T Consensus 125 nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~ 203 (584)
T 3l6x_A 125 NKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVD-HALHALTDEVIIPHSGWEREPNEDCKPRHI 203 (584)
T ss_dssp HHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHHH-HTHHHHHHHTHHHHHCCC----------CC
T ss_pred HHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHHh-ccHHHHHHHHhccccccccccccccccccc
Confidence 9999999999999999999667888999999999999999999999996 57999999772 23
Q ss_pred CCHHHHHHHHHHHHHHhCCc-hhHHHHHHc-ChHHHHHHHHcC------CCHHHHHHHHHHHHHhhcCCc-h--------
Q 007520 443 DDPQTLRMVAGALANLCGNE-KLHTMLEED-GAIKALLAMVRS------GNIDVIAQVARGLANFAKCES-R-------- 505 (600)
Q Consensus 443 ~~~~v~~~Aa~aL~nLa~~~-e~r~~i~~~-G~i~~Lv~lL~s------~~~~v~~~A~~aL~nLa~~~~-~-------- 505 (600)
.++.++..|+++|+||+.+. +++..|++. |+++.|+.++++ .+..+++.|+++|+||+.+.. +
T Consensus 204 ~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~ 283 (584)
T 3l6x_A 204 EWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQ 283 (584)
T ss_dssp CCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--
T ss_pred ccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhh
Confidence 46799999999999998764 668888875 556788888753 455677777788777775410 0
Q ss_pred -------------------h------------h--------------------hhcc----hhhHHHHHhCCcHHHHHHh
Q 007520 506 -------------------A------------I--------------------VQGQ----RKGRSHLMEDSALEWLIAN 530 (600)
Q Consensus 506 -------------------~------------~--------------------~q~~----~~~r~~l~e~g~l~~Lv~L 530 (600)
+ . +.|. ...+..+.+.|++|.|+.+
T Consensus 284 ~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~L 363 (584)
T 3l6x_A 284 EAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADL 363 (584)
T ss_dssp ------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHG
T ss_pred hhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHH
Confidence 0 0 0000 1234455667999999999
Q ss_pred hcCCCHHHHHHHHHHHHHhhcCchhHHHHHHcccHHHHHHhhhcCC-------hHHHHHHHHHHHh
Q 007520 531 SKTNSASTRRHVELALCHLAQNEDNARDFISRGGAKELVQISIESS-------REDIRNLAKKTMK 589 (600)
Q Consensus 531 l~s~~~~v~~~Aa~aL~nLa~~~~~~~~lv~~G~l~~Lv~ll~~~~-------~~~ir~~A~~~L~ 589 (600)
+.++++.++..|+++|+||+.++.++..| ..|+++.|++++.+++ ..++...|..+|.
T Consensus 364 L~s~~~~v~~~A~~aL~nLs~~~~~~~~I-~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~ 428 (584)
T 3l6x_A 364 LTNEHERVVKAASGALRNLAVDARNKELI-GKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTIN 428 (584)
T ss_dssp GGCSCHHHHHHHHHHHHHHHTTCSCHHHH-HHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHHhCChhHHHHH-HhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHH
Confidence 99999999999999999999998887655 7899999999998763 2456666666664
No 6
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.95 E-value=7.9e-27 Score=247.12 Aligned_cols=241 Identities=19% Similarity=0.205 Sum_probs=207.5
Q ss_pred cccCchHHHhcccCCC-----------CccccchHHHH---hhcCch-hHHHHHhcCC-HHHHHHhhCCCCHHHHHHHHH
Q 007520 306 YTKDYISKGSSRFGAP-----------MSLQKSNPSRE---LSGQRA-TIAKICDEVG-LPKILQLLTSEDPDVQIHAVK 369 (600)
Q Consensus 306 ~~~g~i~~Lv~~L~s~-----------~~~~r~~a~~~---L~~~~~-~~~~i~e~Gg-V~~Lv~LL~s~~~~vr~~Aa~ 369 (600)
++.|++++|+.++.+. .+..+..|+.+ ++.+++ ++..+...|| ||+|+.+|.+++++++..|++
T Consensus 70 ~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~ 149 (354)
T 3nmw_A 70 NELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIAS 149 (354)
T ss_dssp HHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHH
T ss_pred HHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHCCCCHHHHHHHHH
Confidence 7899999999999531 23344555554 555544 6666666666 999999999999999999999
Q ss_pred HHHHhhCC--cchHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhc-CCccHHHHH-HhCchhhhHhhhccCCCH
Q 007520 370 VVANLAAE--DINQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAM-NEMNQGLIM-SRGGGQLLAKTASKTDDP 445 (600)
Q Consensus 370 aL~nLa~~--~~~~~~iv~~G~I~~Lv~lL~~~~~~~v~~~Al~aL~NLa~-~~~~r~~I~-~~G~I~~Lv~lL~~~~~~ 445 (600)
+|+||+.. +.++..+++.|+||+|+.+|..+.+..+++.|+++|+||+. +++++..|+ ..|++|+|+.+|....+.
T Consensus 150 aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~ 229 (354)
T 3nmw_A 150 VLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQT 229 (354)
T ss_dssp HHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSS
T ss_pred HHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCc
Confidence 99999984 57899999999999999986556788899999999999999 578899998 699999999999654332
Q ss_pred ---HHHHHHHHHHHHHhC----CchhHHHHHHcChHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchhhhhcchhhHHHH
Q 007520 446 ---QTLRMVAGALANLCG----NEKLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHL 518 (600)
Q Consensus 446 ---~v~~~Aa~aL~nLa~----~~e~r~~i~~~G~i~~Lv~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~q~~~~~r~~l 518 (600)
.++..|+++|+||+. +++++..+++.|+++.|+.+|.+++..++..|+++|+||+..+ +.++..+
T Consensus 230 ~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~--------~~~~~~i 301 (354)
T 3nmw_A 230 NTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARN--------PKDQEAL 301 (354)
T ss_dssp SCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSC--------HHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCC--------HHHHHHH
Confidence 589999999999984 8899999999999999999999999999999999999999654 5678889
Q ss_pred HhCCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCch
Q 007520 519 MEDSALEWLIANSKTNSASTRRHVELALCHLAQNED 554 (600)
Q Consensus 519 ~e~g~l~~Lv~Ll~s~~~~v~~~Aa~aL~nLa~~~~ 554 (600)
++.|++|.|+.++.++++.++..|+++|+||+.+.+
T Consensus 302 ~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~ 337 (354)
T 3nmw_A 302 WDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRP 337 (354)
T ss_dssp HHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCC
T ss_pred HHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCH
Confidence 999999999999999999999999999999987654
No 7
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.95 E-value=6.4e-26 Score=252.16 Aligned_cols=275 Identities=14% Similarity=0.230 Sum_probs=229.8
Q ss_pred cccCchHHHhcccCCC-CccccchHHHH---hhc-CchhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhC-Ccc
Q 007520 306 YTKDYISKGSSRFGAP-MSLQKSNPSRE---LSG-QRATIAKICDEVGLPKILQLLTSEDPDVQIHAVKVVANLAA-EDI 379 (600)
Q Consensus 306 ~~~g~i~~Lv~~L~s~-~~~~r~~a~~~---L~~-~~~~~~~i~e~GgV~~Lv~LL~s~~~~vr~~Aa~aL~nLa~-~~~ 379 (600)
+..|++|.|+.++.+. .+..+..|+++ ++. +......+++.|+||.|+.+|.++++.++..|+++|+||+. ++.
T Consensus 116 i~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~ 195 (529)
T 3tpo_A 116 IRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSA 195 (529)
T ss_dssp HHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHH
T ss_pred HHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHH
Confidence 6789999999999765 45566666655 444 55677889999999999999999999999999999999998 577
Q ss_pred hHHHHHHcCCHHHHHHHHccC----------------------------------------------CCHHHHHHHHHHH
Q 007520 380 NQEKIVEEGGLDALLLLLRTS----------------------------------------------QNTTILRVASGAI 413 (600)
Q Consensus 380 ~~~~iv~~G~I~~Lv~lL~~~----------------------------------------------~~~~v~~~Al~aL 413 (600)
++..++..|++++|+.+|... +++.++..|+++|
T Consensus 196 ~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL 275 (529)
T 3tpo_A 196 FRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAI 275 (529)
T ss_dssp HHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHH
T ss_pred HHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHH
Confidence 899999999999998887521 1234555577777
Q ss_pred HHhhcCC-ccHHHHHHhCchhhhHhhhccCCCHHHHHHHHHHHHHHh-CCchhHHHHHHcChHHHHHHHHcCCCHHHHHH
Q 007520 414 ANLAMNE-MNQGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLC-GNEKLHTMLEEDGAIKALLAMVRSGNIDVIAQ 491 (600)
Q Consensus 414 ~NLa~~~-~~r~~I~~~G~I~~Lv~lL~~~~~~~v~~~Aa~aL~nLa-~~~e~r~~i~~~G~i~~Lv~lL~s~~~~v~~~ 491 (600)
++|+.++ +....++..|+++.|+.+|. ++++.++..++++|+||+ +++..+..+++.|+++.|+.+|.++++.++..
T Consensus 276 ~~l~~~~~~~~~~v~~~g~i~~Lv~lL~-~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~ 354 (529)
T 3tpo_A 276 SYLTDGPNERIEMVVKKGVVPQLVKLLG-ATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKE 354 (529)
T ss_dssp HHHHSSCHHHHHHHHTTTCHHHHHHHHT-CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHH
T ss_pred HHhhhhhhhhHHHHHhccchHHHHHHhc-CCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHH
Confidence 7777663 44556777899999999995 478899999999999997 45778888999999999999999999999999
Q ss_pred HHHHHHHhhcCCchhhhhcchhhHHHHHhCCcHHHHHHhhcCCCHHHHHHHHHHHHHhhc--CchhHHHHHHcccHHHHH
Q 007520 492 VARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSKTNSASTRRHVELALCHLAQ--NEDNARDFISRGGAKELV 569 (600)
Q Consensus 492 A~~aL~nLa~~~~~~~~q~~~~~r~~l~e~g~l~~Lv~Ll~s~~~~v~~~Aa~aL~nLa~--~~~~~~~lv~~G~l~~Lv 569 (600)
|+|+|+||+.++ +..+..+.+.|++|.|+.++.+++..++..|+|+|+|++. +++....+++.|++++|+
T Consensus 355 a~~aL~nl~~~~--------~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~ 426 (529)
T 3tpo_A 355 ATWTMSNITAGR--------QDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLM 426 (529)
T ss_dssp HHHHHHHHHTSC--------HHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHhccc--------HHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHH
Confidence 999999999765 4567778899999999999999999999999999999976 456778899999999999
Q ss_pred HhhhcCChHHHHHHHHHHHhc
Q 007520 570 QISIESSREDIRNLAKKTMKS 590 (600)
Q Consensus 570 ~ll~~~~~~~ir~~A~~~L~~ 590 (600)
.++.+++ +.++..+..+|.+
T Consensus 427 ~LL~~~d-~~i~~~~L~aL~n 446 (529)
T 3tpo_A 427 NLLSAKD-TKIIQVILDAISN 446 (529)
T ss_dssp HGGGCSC-HHHHHHHHHHHHH
T ss_pred HHhcCCC-HHHHHHHHHHHHH
Confidence 9998766 5566666666544
No 8
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=99.94 E-value=3.9e-26 Score=249.76 Aligned_cols=275 Identities=15% Similarity=0.188 Sum_probs=229.5
Q ss_pred cccCchHHHhcccCCCCccccchHHHH---hhcC-chhHHHHHhcCCHHHHHHhhC-CCCHHHHHHHHHHHHHhhCCcch
Q 007520 306 YTKDYISKGSSRFGAPMSLQKSNPSRE---LSGQ-RATIAKICDEVGLPKILQLLT-SEDPDVQIHAVKVVANLAAEDIN 380 (600)
Q Consensus 306 ~~~g~i~~Lv~~L~s~~~~~r~~a~~~---L~~~-~~~~~~i~e~GgV~~Lv~LL~-s~~~~vr~~Aa~aL~nLa~~~~~ 380 (600)
...|++|.|+.+++++.+..+..|+.+ ++.+ ++++..+++.||||+|+.+|. ++++.+++.|+++|+||+.++.+
T Consensus 41 ~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~ 120 (457)
T 1xm9_A 41 YQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDEL 120 (457)
T ss_dssp HHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSST
T ss_pred HHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHh
Confidence 689999999999999887777777665 5554 888899999999999999998 88999999999999999999889
Q ss_pred HHHHHHcCCHHHHHHHHc--------cC-------CCHHHHHHHHHHHHHhhcCCccHHHHHHh-CchhhhHhhhcc---
Q 007520 381 QEKIVEEGGLDALLLLLR--------TS-------QNTTILRVASGAIANLAMNEMNQGLIMSR-GGGQLLAKTASK--- 441 (600)
Q Consensus 381 ~~~iv~~G~I~~Lv~lL~--------~~-------~~~~v~~~Al~aL~NLa~~~~~r~~I~~~-G~I~~Lv~lL~~--- 441 (600)
+..+++ |++|+|+.+|. +. .+..+.+.|+++|+|||.+++++..+++. |++++|+.+|..
T Consensus 121 ~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a~~aL~nLs~~~~~~~~i~~~~g~i~~Lv~lL~~~~~ 199 (457)
T 1xm9_A 121 KEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVA 199 (457)
T ss_dssp HHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHHHHHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHH
T ss_pred HHHHHh-ccHHHHHHHHhccccccccCccchhcccccHHHHHHHHHHHHHHccCHHHHHHHHHcCCCHHHHHHHHHhhcc
Confidence 999999 99999999993 11 35677889999999999998899999997 999999877742
Q ss_pred --------------------------------------------------------------------------------
Q 007520 442 -------------------------------------------------------------------------------- 441 (600)
Q Consensus 442 -------------------------------------------------------------------------------- 441 (600)
T Consensus 200 ~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 279 (457)
T 1xm9_A 200 ASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWL 279 (457)
T ss_dssp HTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC----------------------------CCCCCSSCCGGGGG
T ss_pred ccCCchHHHHHHHHHHHhcccchhccCcchhhhcccccccccccccccchhhccchhhhhccccCCccccccCchHHHHH
Confidence
Q ss_pred ---------------CCCHHHHHHHHHHHHHHhCCc-h----h-HHHHHHcChHHHHHHHHcCCCHHHHHHHHHHHHHhh
Q 007520 442 ---------------TDDPQTLRMVAGALANLCGNE-K----L-HTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFA 500 (600)
Q Consensus 442 ---------------~~~~~v~~~Aa~aL~nLa~~~-e----~-r~~i~~~G~i~~Lv~lL~s~~~~v~~~A~~aL~nLa 500 (600)
+.++.+++.|+|+|+|||... . . +..+.+.|+++.|+.+|.+++..++..|+|+|+||+
T Consensus 280 ~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls 359 (457)
T 1xm9_A 280 YHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMS 359 (457)
T ss_dssp GSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred hCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHh
Confidence 113566777899999998543 2 2 334456899999999999999999999999999999
Q ss_pred cCCchhhhhcchhhHHHHHhCCcHHHHHHhhcCCC------HHHHHHHHHHHHHhhc-CchhHHHHHHcccHHHHHHhhh
Q 007520 501 KCESRAIVQGQRKGRSHLMEDSALEWLIANSKTNS------ASTRRHVELALCHLAQ-NEDNARDFISRGGAKELVQISI 573 (600)
Q Consensus 501 ~~~~~~~~q~~~~~r~~l~e~g~l~~Lv~Ll~s~~------~~v~~~Aa~aL~nLa~-~~~~~~~lv~~G~l~~Lv~ll~ 573 (600)
.+ ...+..+ ..|++|.|+.++.+++ +.+...++++|.|+.. +++.+..+.+.||++.|++++.
T Consensus 360 ~~---------~~~~~~i-~~~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~~~~~~i~~~g~l~~L~~L~~ 429 (457)
T 1xm9_A 360 RH---------PLLHRVM-GNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCR 429 (457)
T ss_dssp TS---------GGGHHHH-HHHTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHH
T ss_pred cC---------HHHHHHH-HHhhhHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHHc
Confidence 65 2344444 4589999999998864 4688899999999965 5667888889999999999999
Q ss_pred cCChHHHHHHHHHHHhcC
Q 007520 574 ESSREDIRNLAKKTMKSN 591 (600)
Q Consensus 574 ~~~~~~ir~~A~~~L~~~ 591 (600)
++..+.++..|..+|.+.
T Consensus 430 ~~~~~~i~~~A~~~L~~~ 447 (457)
T 1xm9_A 430 SSASPKAAEAARLLLSDM 447 (457)
T ss_dssp CTTCHHHHHHHHHHHHTT
T ss_pred CCCcHHHHHHHHHHHHHH
Confidence 874567889888888643
No 9
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.94 E-value=2.6e-26 Score=264.48 Aligned_cols=272 Identities=14% Similarity=0.067 Sum_probs=227.6
Q ss_pred cccCchHHHhcccCCCCccccchHHHH---hhc-Cc-----------------------------hh---HHHHHhcCCH
Q 007520 306 YTKDYISKGSSRFGAPMSLQKSNPSRE---LSG-QR-----------------------------AT---IAKICDEVGL 349 (600)
Q Consensus 306 ~~~g~i~~Lv~~L~s~~~~~r~~a~~~---L~~-~~-----------------------------~~---~~~i~e~GgV 349 (600)
.+.|++|.|+.+++++.+.....+++. ++. ++ .. ...+++.|++
T Consensus 418 ~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaV 497 (810)
T 3now_A 418 EDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGIT 497 (810)
T ss_dssp HCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHH
T ss_pred HccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCH
Confidence 468999999999998876666666665 333 21 11 2678999999
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhhCCcchHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcCCccHHHH---
Q 007520 350 PKILQLLTSEDPDVQIHAVKVVANLAAEDINQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMNEMNQGLI--- 426 (600)
Q Consensus 350 ~~Lv~LL~s~~~~vr~~Aa~aL~nLa~~~~~~~~iv~~G~I~~Lv~lL~~~~~~~v~~~Al~aL~NLa~~~~~r~~I--- 426 (600)
|+|+.+|.++++.++..|+++|+|++.+++++..+++.|++|+|+.+|. +.+..++..|++||.||+.+.+....+
T Consensus 498 p~LV~LL~s~s~~vqe~Aa~aL~NLA~d~~~r~~Vv~~Gaip~Lv~LL~-s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~ 576 (810)
T 3now_A 498 TALCALAKTESHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMAL-EGTEKGKRHATQALARIGITINPEVSFSGQ 576 (810)
T ss_dssp HHHHHHHTCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHH-SSCHHHHHHHHHHHHHHHHHSCHHHHTTTH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHc-cCCHHHHHHHHHHHHHHhcCCChhhhhcch
Confidence 9999999999999999999999999998889999999999999999998 557788999999999999764333322
Q ss_pred HHhCchhhhHhhhccCCCHHHHHHHHHHHHHHhCC-chhHHHHHHcChHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCch
Q 007520 427 MSRGGGQLLAKTASKTDDPQTLRMVAGALANLCGN-EKLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFAKCESR 505 (600)
Q Consensus 427 ~~~G~I~~Lv~lL~~~~~~~v~~~Aa~aL~nLa~~-~e~r~~i~~~G~i~~Lv~lL~s~~~~v~~~A~~aL~nLa~~~~~ 505 (600)
...|++|+|+.+|....+......|+++|+||+.. ++++..+++.|+++.|+.+|.++++.++..|+++|+||+.+
T Consensus 577 ~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~--- 653 (810)
T 3now_A 577 RSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMS--- 653 (810)
T ss_dssp HHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTS---
T ss_pred hhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCC---
Confidence 12479999999996433445556899999999976 67899999999999999999999999999999999999975
Q ss_pred hhhhcchhhHHHHHh-CCcHHHHHHhhcCCCHHHHHHHHHHHHHhhc-CchhHHHHHH-cccHHHHHHhhhcCChHHHHH
Q 007520 506 AIVQGQRKGRSHLME-DSALEWLIANSKTNSASTRRHVELALCHLAQ-NEDNARDFIS-RGGAKELVQISIESSREDIRN 582 (600)
Q Consensus 506 ~~~q~~~~~r~~l~e-~g~l~~Lv~Ll~s~~~~v~~~Aa~aL~nLa~-~~~~~~~lv~-~G~l~~Lv~ll~~~~~~~ir~ 582 (600)
+..+..+.+ .|+++.|+.++.+++..++..|+|+|+||+. ++..++.+++ .|++++|+.++.+++. .++.
T Consensus 654 ------~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~-~vq~ 726 (810)
T 3now_A 654 ------EDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSP-AVQH 726 (810)
T ss_dssp ------HHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSH-HHHH
T ss_pred ------hHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCH-HHHH
Confidence 345666665 7999999999999999999999999999988 7788899998 8999999999997664 4555
Q ss_pred HHHHHH
Q 007520 583 LAKKTM 588 (600)
Q Consensus 583 ~A~~~L 588 (600)
.|..++
T Consensus 727 ~A~~aL 732 (810)
T 3now_A 727 RGIVII 732 (810)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555433
No 10
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.94 E-value=4.5e-25 Score=218.31 Aligned_cols=234 Identities=23% Similarity=0.394 Sum_probs=212.4
Q ss_pred CCHHHHHHhhCCCCHHHHHHHHHHHHHhhCC-cchHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcC-CccHH
Q 007520 347 VGLPKILQLLTSEDPDVQIHAVKVVANLAAE-DINQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMN-EMNQG 424 (600)
Q Consensus 347 GgV~~Lv~LL~s~~~~vr~~Aa~aL~nLa~~-~~~~~~iv~~G~I~~Lv~lL~~~~~~~v~~~Al~aL~NLa~~-~~~r~ 424 (600)
|+++.|+.+|.++++.++..|+++|.+++.. +.++..+++.|+++.|+.+|. +++..++..|+++|+||+.+ ++++.
T Consensus 2 ~~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~ 80 (252)
T 4hxt_A 2 NDVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLT-STDSEVQKEAARALANIASGPDEAIK 80 (252)
T ss_dssp CHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTT-CSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHh-CCCHHHHHHHHHHHHHHHcCChHHHH
Confidence 6799999999999999999999999999984 458999999999999999998 56799999999999999998 89999
Q ss_pred HHHHhCchhhhHhhhccCCCHHHHHHHHHHHHHHh-CCchhHHHHHHcChHHHHHHHHcCCCHHHHHHHHHHHHHhhcCC
Q 007520 425 LIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLC-GNEKLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFAKCE 503 (600)
Q Consensus 425 ~I~~~G~I~~Lv~lL~~~~~~~v~~~Aa~aL~nLa-~~~e~r~~i~~~G~i~~Lv~lL~s~~~~v~~~A~~aL~nLa~~~ 503 (600)
.+++.|+++.|+.+|. ++++.++..|+++|+||+ .+++.+..+.+.|+++.|+.++.++++.++..|+++|+||+..+
T Consensus 81 ~~~~~~~i~~l~~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~ 159 (252)
T 4hxt_A 81 AIVDAGGVEVLVKLLT-STDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGP 159 (252)
T ss_dssp HHHHTTHHHHHHHHTT-CSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC
T ss_pred HHHHCCCHHHHHHHHc-CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC
Confidence 9999999999999996 478899999999999999 67889999999999999999999999999999999999999764
Q ss_pred chhhhhcchhhHHHHHhCCcHHHHHHhhcCCCHHHHHHHHHHHHHhhc-CchhHHHHHHcccHHHHHHhhhcCChHHHHH
Q 007520 504 SRAIVQGQRKGRSHLMEDSALEWLIANSKTNSASTRRHVELALCHLAQ-NEDNARDFISRGGAKELVQISIESSREDIRN 582 (600)
Q Consensus 504 ~~~~~q~~~~~r~~l~e~g~l~~Lv~Ll~s~~~~v~~~Aa~aL~nLa~-~~~~~~~lv~~G~l~~Lv~ll~~~~~~~ir~ 582 (600)
+..+..+.+.|+++.|+.++.++++.++..|+++|++|+. ++..+..+++.|+++.|+.++.+++ +.++.
T Consensus 160 --------~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~-~~v~~ 230 (252)
T 4hxt_A 160 --------DEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTD-SEVQK 230 (252)
T ss_dssp --------HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSC-HHHHH
T ss_pred --------HHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCc-HHHHH
Confidence 3456678899999999999999999999999999999987 5567788889999999999998765 57888
Q ss_pred HHHHHHhcC
Q 007520 583 LAKKTMKSN 591 (600)
Q Consensus 583 ~A~~~L~~~ 591 (600)
.|..+|.+.
T Consensus 231 ~a~~~L~~l 239 (252)
T 4hxt_A 231 EAQRALENI 239 (252)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888776543
No 11
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.94 E-value=3.6e-25 Score=245.23 Aligned_cols=273 Identities=17% Similarity=0.242 Sum_probs=229.3
Q ss_pred cccCchHHHhcccCCC-CccccchHHHH---h-hcCchhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhC-Ccc
Q 007520 306 YTKDYISKGSSRFGAP-MSLQKSNPSRE---L-SGQRATIAKICDEVGLPKILQLLTSEDPDVQIHAVKVVANLAA-EDI 379 (600)
Q Consensus 306 ~~~g~i~~Lv~~L~s~-~~~~r~~a~~~---L-~~~~~~~~~i~e~GgV~~Lv~LL~s~~~~vr~~Aa~aL~nLa~-~~~ 379 (600)
+..|++|+||.+|++. .+..+..|+++ + +++...+..+++.|+||.|+.+|.++++.+++.|+++|+||+. ++.
T Consensus 97 i~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~ 176 (510)
T 3ul1_B 97 IRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSA 176 (510)
T ss_dssp HHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHH
T ss_pred HHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHH
Confidence 6899999999999865 45566666655 4 3567788899999999999999999999999999999999998 567
Q ss_pred hHHHHHHcCCHHHHHHHHccCC----CHHHHHHHHHHHHHhhcCCccH-HHHHHhCchhhhHhhhccCCCHHHHHHHHHH
Q 007520 380 NQEKIVEEGGLDALLLLLRTSQ----NTTILRVASGAIANLAMNEMNQ-GLIMSRGGGQLLAKTASKTDDPQTLRMVAGA 454 (600)
Q Consensus 380 ~~~~iv~~G~I~~Lv~lL~~~~----~~~v~~~Al~aL~NLa~~~~~r-~~I~~~G~I~~Lv~lL~~~~~~~v~~~Aa~a 454 (600)
.+..++..|++++|+.+|.... ...+.+.++++|+|++.+.... ......|++|.|+.++. ++++.++..|+++
T Consensus 177 ~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~-~~~~~v~~~A~~a 255 (510)
T 3ul1_B 177 FRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLH-HNDPEVLADSCWA 255 (510)
T ss_dssp HHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTT-CSCHHHHHHHHHH
T ss_pred HHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHh-cCCHHHHHHHHHH
Confidence 7999999999999999997432 3457888999999999984433 34444789999999995 5788999999999
Q ss_pred HHHHhCCc-hhHHHHHHcChHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchhhhhcchhhHHHHHhCCcHHHHHHhhcC
Q 007520 455 LANLCGNE-KLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSKT 533 (600)
Q Consensus 455 L~nLa~~~-e~r~~i~~~G~i~~Lv~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~q~~~~~r~~l~e~g~l~~Lv~Ll~s 533 (600)
|++|+.++ +....+...|+++.|+.+|.++++.++..|+++|+|++..+ ...+..+++.|+++.|+.++.+
T Consensus 256 L~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~--------~~~~~~i~~~g~l~~L~~LL~~ 327 (510)
T 3ul1_B 256 ISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGT--------DEQTQKVIDAGALAVFPSLLTN 327 (510)
T ss_dssp HHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSC--------HHHHHHHHHTTGGGGCC-CTTC
T ss_pred HHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCC--------HHHHHHHhhccchHHHHHHhcC
Confidence 99999765 45566788999999999999999999999999999998765 4566778899999999999999
Q ss_pred CCHHHHHHHHHHHHHhhcC-chhHHHHHHcccHHHHHHhhhcCChHHHHHHHHHHH
Q 007520 534 NSASTRRHVELALCHLAQN-EDNARDFISRGGAKELVQISIESSREDIRNLAKKTM 588 (600)
Q Consensus 534 ~~~~v~~~Aa~aL~nLa~~-~~~~~~lv~~G~l~~Lv~ll~~~~~~~ir~~A~~~L 588 (600)
+++.++..|+|+|+||+.+ +.....+++.|+++.|+.++.+++. .++..|..+|
T Consensus 328 ~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~-~v~~~Aa~aL 382 (510)
T 3ul1_B 328 PKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADF-KTQKEAAWAI 382 (510)
T ss_dssp SSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCH-HHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCH-HHHHHHHHHH
Confidence 9999999999999999764 5567778899999999999998764 4555554444
No 12
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=99.94 E-value=7.5e-26 Score=246.97 Aligned_cols=241 Identities=19% Similarity=0.199 Sum_probs=206.8
Q ss_pred cccCchHHHhcccCC-----------CCccccchHHHH---hhcCch-hHHHHHhcCC-HHHHHHhhCCCCHHHHHHHHH
Q 007520 306 YTKDYISKGSSRFGA-----------PMSLQKSNPSRE---LSGQRA-TIAKICDEVG-LPKILQLLTSEDPDVQIHAVK 369 (600)
Q Consensus 306 ~~~g~i~~Lv~~L~s-----------~~~~~r~~a~~~---L~~~~~-~~~~i~e~Gg-V~~Lv~LL~s~~~~vr~~Aa~ 369 (600)
+..|++++|+.++.. ..+..+..|+++ ++.+++ ++..+...+| ||+|+.+|.+++++++..|++
T Consensus 186 ~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~ 265 (458)
T 3nmz_A 186 NELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIAS 265 (458)
T ss_dssp HHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHH
T ss_pred HHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHH
Confidence 689999999999952 122334445544 555554 5555656655 999999999999999999999
Q ss_pred HHHHhhCC--cchHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhc-CCccHHHHH-HhCchhhhHhhhccCCCH
Q 007520 370 VVANLAAE--DINQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAM-NEMNQGLIM-SRGGGQLLAKTASKTDDP 445 (600)
Q Consensus 370 aL~nLa~~--~~~~~~iv~~G~I~~Lv~lL~~~~~~~v~~~Al~aL~NLa~-~~~~r~~I~-~~G~I~~Lv~lL~~~~~~ 445 (600)
+|+||+.. +.++..|++.|+||+|+.+|..+.+..++..|+++|+||+. +++++..|+ ..|++++|+.+|....+.
T Consensus 266 aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~ 345 (458)
T 3nmz_A 266 VLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQT 345 (458)
T ss_dssp HHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSS
T ss_pred HHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCc
Confidence 99999984 56899999999999999987656788899999999999999 678999998 699999999999754332
Q ss_pred ---HHHHHHHHHHHHHh----CCchhHHHHHHcChHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchhhhhcchhhHHHH
Q 007520 446 ---QTLRMVAGALANLC----GNEKLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHL 518 (600)
Q Consensus 446 ---~v~~~Aa~aL~nLa----~~~e~r~~i~~~G~i~~Lv~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~q~~~~~r~~l 518 (600)
.++..|+++|+||+ ++++++..+++.|+++.|+.+|.+++..++..|+++|+||+..+ +.++..+
T Consensus 346 ~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~--------~~~~~~i 417 (458)
T 3nmz_A 346 NTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARN--------PKDQEAL 417 (458)
T ss_dssp STTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSSC--------HHHHHHH
T ss_pred chHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcCC--------HHHHHHH
Confidence 58999999999998 58899999999999999999999999999999999999999654 5678889
Q ss_pred HhCCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCch
Q 007520 519 MEDSALEWLIANSKTNSASTRRHVELALCHLAQNED 554 (600)
Q Consensus 519 ~e~g~l~~Lv~Ll~s~~~~v~~~Aa~aL~nLa~~~~ 554 (600)
++.|++|.|+.++.++++.++..|+++|+||+.+..
T Consensus 418 ~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~p 453 (458)
T 3nmz_A 418 WDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRP 453 (458)
T ss_dssp HHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCCS
T ss_pred HHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCH
Confidence 999999999999999999999999999999987543
No 13
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.94 E-value=7.9e-25 Score=216.57 Aligned_cols=236 Identities=24% Similarity=0.356 Sum_probs=212.4
Q ss_pred CchHHHhcccCCCCccccchHHHH---hhc-CchhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCC-cchHHH
Q 007520 309 DYISKGSSRFGAPMSLQKSNPSRE---LSG-QRATIAKICDEVGLPKILQLLTSEDPDVQIHAVKVVANLAAE-DINQEK 383 (600)
Q Consensus 309 g~i~~Lv~~L~s~~~~~r~~a~~~---L~~-~~~~~~~i~e~GgV~~Lv~LL~s~~~~vr~~Aa~aL~nLa~~-~~~~~~ 383 (600)
|+++.|+..+.++.+..+..++.. ++. ++..+..+++.|+++.|+.+|.++++.++..|+++|++++.+ +.++..
T Consensus 2 ~~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 81 (252)
T 4hxt_A 2 NDVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKA 81 (252)
T ss_dssp CHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHH
Confidence 678999999999887777777765 443 445888899999999999999999999999999999999995 888999
Q ss_pred HHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhh-cCCccHHHHHHhCchhhhHhhhccCCCHHHHHHHHHHHHHHhC-C
Q 007520 384 IVEEGGLDALLLLLRTSQNTTILRVASGAIANLA-MNEMNQGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLCG-N 461 (600)
Q Consensus 384 iv~~G~I~~Lv~lL~~~~~~~v~~~Al~aL~NLa-~~~~~r~~I~~~G~I~~Lv~lL~~~~~~~v~~~Aa~aL~nLa~-~ 461 (600)
+++.|+++.|+.+|. ++++.++..|+++|+||+ .++.++..+++.|+++.|+.++. ++++.++..++++|+||+. +
T Consensus 82 ~~~~~~i~~l~~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~-~~~~~~~~~a~~~L~~l~~~~ 159 (252)
T 4hxt_A 82 IVDAGGVEVLVKLLT-STDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLT-STDSEVQKEAARALANIASGP 159 (252)
T ss_dssp HHHTTHHHHHHHHTT-CSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTT-CSCHHHHHHHHHHHHHHTTSC
T ss_pred HHHCCCHHHHHHHHc-CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHc-CCCHHHHHHHHHHHHHHHcCC
Confidence 999999999999999 678999999999999999 45889999999999999999996 4788999999999999996 4
Q ss_pred chhHHHHHHcChHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchhhhhcchhhHHHHHhCCcHHHHHHhhcCCCHHHHHH
Q 007520 462 EKLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSKTNSASTRRH 541 (600)
Q Consensus 462 ~e~r~~i~~~G~i~~Lv~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~q~~~~~r~~l~e~g~l~~Lv~Ll~s~~~~v~~~ 541 (600)
+..+..+.+.|+++.|+.++.++++.++..|+++|++|+.++ +..+..+.+.|+++.|+.++.++++.++..
T Consensus 160 ~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~--------~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~ 231 (252)
T 4hxt_A 160 DEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGP--------TSAIKAIVDAGGVEVLQKLLTSTDSEVQKE 231 (252)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSB--------HHHHHHHHHTTHHHHHHHGGGCSCHHHHHH
T ss_pred HHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCC--------HHHHHHHHHCCCHHHHHHHHCCCcHHHHHH
Confidence 666788899999999999999999999999999999999754 456778999999999999999999999999
Q ss_pred HHHHHHHhhcCch
Q 007520 542 VELALCHLAQNED 554 (600)
Q Consensus 542 Aa~aL~nLa~~~~ 554 (600)
|+++|+||+....
T Consensus 232 a~~~L~~l~~~~~ 244 (252)
T 4hxt_A 232 AQRALENIKSGGW 244 (252)
T ss_dssp HHHHHHHHHHTCB
T ss_pred HHHHHHHHHcCCC
Confidence 9999999986543
No 14
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=99.93 E-value=3.1e-25 Score=247.81 Aligned_cols=273 Identities=19% Similarity=0.218 Sum_probs=221.0
Q ss_pred cccCchHHHhcccCCCCccccchHHHH---hhc--CchhHHHHHhcCCHHHHHHhhCC-CCHHHHHHHHHHHHHhhCCcc
Q 007520 306 YTKDYISKGSSRFGAPMSLQKSNPSRE---LSG--QRATIAKICDEVGLPKILQLLTS-EDPDVQIHAVKVVANLAAEDI 379 (600)
Q Consensus 306 ~~~g~i~~Lv~~L~s~~~~~r~~a~~~---L~~--~~~~~~~i~e~GgV~~Lv~LL~s-~~~~vr~~Aa~aL~nLa~~~~ 379 (600)
+..|+||+||.+|+++....+..|+.+ ++. +..++..|++.|||++|+.+|.+ .+..+++.|+.+|+||+.++.
T Consensus 87 ~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~ 166 (584)
T 3l6x_A 87 RKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDS 166 (584)
T ss_dssp HHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGG
T ss_pred HHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCch
Confidence 678999999999999988888888776 665 37899999999999999999986 688999999999999999999
Q ss_pred hHHHHHHcCCHHHHHHHHc-----------------cCCCHHHHHHHHHHHHHhhcC-CccHHHHHHh-CchhhhHhhhc
Q 007520 380 NQEKIVEEGGLDALLLLLR-----------------TSQNTTILRVASGAIANLAMN-EMNQGLIMSR-GGGQLLAKTAS 440 (600)
Q Consensus 380 ~~~~iv~~G~I~~Lv~lL~-----------------~~~~~~v~~~Al~aL~NLa~~-~~~r~~I~~~-G~I~~Lv~lL~ 440 (600)
++..|+. |++|+|+.++. ...+..++..|+++|+||+.+ +++|..|++. |+++.|+.++.
T Consensus 167 ~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~ 245 (584)
T 3l6x_A 167 IKMEIVD-HALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQ 245 (584)
T ss_dssp GHHHHHH-HTHHHHHHHTHHHHHCCC----------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHH
T ss_pred hhHHHHh-ccHHHHHHHHhcccccccccccccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHH
Confidence 9999996 57999999761 234678999999999999987 4568888874 44445555442
Q ss_pred -------------------------------------------------------------------------cCCCHHH
Q 007520 441 -------------------------------------------------------------------------KTDDPQT 447 (600)
Q Consensus 441 -------------------------------------------------------------------------~~~~~~v 447 (600)
.+.++.+
T Consensus 246 ~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v 325 (584)
T 3l6x_A 246 AEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAI 325 (584)
T ss_dssp HHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHH
T ss_pred HhhcccCccHHHHHHHHHHHHHhhccccccccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHH
Confidence 2234566
Q ss_pred HHHHHHHHHHHhCCc-----hhHHHHHHcChHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchhhhhcchhhHHHHHhCC
Q 007520 448 LRMVAGALANLCGNE-----KLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLMEDS 522 (600)
Q Consensus 448 ~~~Aa~aL~nLa~~~-----e~r~~i~~~G~i~~Lv~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~q~~~~~r~~l~e~g 522 (600)
++.|+++|+|||... .++..+.+.|+++.|+.+|.++++.++..|+++|+||+.+. ..+..| ..|
T Consensus 326 ~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~---------~~~~~I-~~g 395 (584)
T 3l6x_A 326 LEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDA---------RNKELI-GKH 395 (584)
T ss_dssp HHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTC---------SCHHHH-HHH
T ss_pred HHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCCh---------hHHHHH-HhC
Confidence 777888888887542 33445566799999999999999999999999999999763 345555 679
Q ss_pred cHHHHHHhhcCC--------CHHHHHHHHHHHHHhhc-CchhHHHHHHcccHHHHHHhhhcC-ChHHHHHHHHHHHh
Q 007520 523 ALEWLIANSKTN--------SASTRRHVELALCHLAQ-NEDNARDFISRGGAKELVQISIES-SREDIRNLAKKTMK 589 (600)
Q Consensus 523 ~l~~Lv~Ll~s~--------~~~v~~~Aa~aL~nLa~-~~~~~~~lv~~G~l~~Lv~ll~~~-~~~~ir~~A~~~L~ 589 (600)
++|.|+.+|.++ +..+...|+++|.||+. ++.+++.+++.|+++.|+.++.+. ..+.+...|..+|.
T Consensus 396 ~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~ 472 (584)
T 3l6x_A 396 AIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQ 472 (584)
T ss_dssp HHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHH
T ss_pred CHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHH
Confidence 999999999876 46889999999999964 678999999999999999999875 34556666655543
No 15
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.93 E-value=5.4e-25 Score=219.20 Aligned_cols=236 Identities=23% Similarity=0.301 Sum_probs=212.6
Q ss_pred cccCchHHHhcccCCCCccccchHHHH----hhcCchhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhC-Ccch
Q 007520 306 YTKDYISKGSSRFGAPMSLQKSNPSRE----LSGQRATIAKICDEVGLPKILQLLTSEDPDVQIHAVKVVANLAA-EDIN 380 (600)
Q Consensus 306 ~~~g~i~~Lv~~L~s~~~~~r~~a~~~----L~~~~~~~~~i~e~GgV~~Lv~LL~s~~~~vr~~Aa~aL~nLa~-~~~~ 380 (600)
.....++.++..+.++.+..+..++.. ++.+++.+..+++.|+++.|+.+|.++++.++..|+++|++++. ++.+
T Consensus 9 ~~~~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~ 88 (252)
T 4db8_A 9 HHGSELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ 88 (252)
T ss_dssp CTTCSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred cccchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHH
Confidence 445679999999999988888777765 33466677889999999999999999999999999999999998 7888
Q ss_pred HHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcCCccH-HHHHHhCchhhhHhhhccCCCHHHHHHHHHHHHHHh
Q 007520 381 QEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMNEMNQ-GLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLC 459 (600)
Q Consensus 381 ~~~iv~~G~I~~Lv~lL~~~~~~~v~~~Al~aL~NLa~~~~~r-~~I~~~G~I~~Lv~lL~~~~~~~v~~~Aa~aL~nLa 459 (600)
+..+++.|+++.|+.+|. ++++.++..|+++|+||+.++.++ ..+++.|+++.|+.+|.+ +++.++..|+++|+||+
T Consensus 89 ~~~i~~~g~i~~L~~lL~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~-~~~~v~~~a~~~L~~l~ 166 (252)
T 4db8_A 89 IQAVIDAGALPALVQLLS-SPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSS-PNEQILQEALWALSNIA 166 (252)
T ss_dssp HHHHHHTTHHHHHHHGGG-CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGC-SCHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHc-CCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhC-CCHHHHHHHHHHHHHHH
Confidence 999999999999999999 578999999999999999998888 889999999999999954 78899999999999999
Q ss_pred C-CchhHHHHHHcChHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchhhhhcchhhHHHHHhCCcHHHHHHhhcCCCHHH
Q 007520 460 G-NEKLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSKTNSAST 538 (600)
Q Consensus 460 ~-~~e~r~~i~~~G~i~~Lv~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~q~~~~~r~~l~e~g~l~~Lv~Ll~s~~~~v 538 (600)
. +++.+..+.+.|+++.|+.++.++++.++..|+++|+||+..+ +..+..+.+.|+++.|+.++.++++.+
T Consensus 167 ~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~--------~~~~~~~~~~g~i~~L~~ll~~~~~~v 238 (252)
T 4db8_A 167 SGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG--------NEQKQAVKEAGALEKLEQLQSHENEKI 238 (252)
T ss_dssp TSCHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSC--------HHHHHHHHHTTHHHHHHTTTTCSSSHH
T ss_pred cCChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCC--------HHHHHHHHHCCcHHHHHHHhCCCCHHH
Confidence 6 4677788899999999999999999999999999999999654 456778899999999999999999999
Q ss_pred HHHHHHHHHHhhc
Q 007520 539 RRHVELALCHLAQ 551 (600)
Q Consensus 539 ~~~Aa~aL~nLa~ 551 (600)
+..|+++|+||+.
T Consensus 239 ~~~A~~~L~~l~~ 251 (252)
T 4db8_A 239 QKEAQEALEKLQS 251 (252)
T ss_dssp HHTHHHHHHTTC-
T ss_pred HHHHHHHHHHHhc
Confidence 9999999999975
No 16
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.93 E-value=3.8e-24 Score=237.91 Aligned_cols=271 Identities=15% Similarity=0.232 Sum_probs=223.7
Q ss_pred cCchHHHhcccCCCCccccchHHHH----hhc-CchhHHHHHhcCCHHHHHHhhC-CCCHHHHHHHHHHHHHhhC-Ccch
Q 007520 308 KDYISKGSSRFGAPMSLQKSNPSRE----LSG-QRATIAKICDEVGLPKILQLLT-SEDPDVQIHAVKVVANLAA-EDIN 380 (600)
Q Consensus 308 ~g~i~~Lv~~L~s~~~~~r~~a~~~----L~~-~~~~~~~i~e~GgV~~Lv~LL~-s~~~~vr~~Aa~aL~nLa~-~~~~ 380 (600)
...++.++..+.++.......++.. ++. ..+.+..+++.|+||.|+.+|. ++++.++..|+++|+|++. ++.+
T Consensus 75 ~~~l~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~ 154 (529)
T 3tpo_A 75 NWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQ 154 (529)
T ss_dssp SCCHHHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHH
Confidence 3468899999999887777666654 443 4456788999999999999996 5679999999999999998 5667
Q ss_pred HHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcC-CccHHHHHHhCchhhhHhhhcc------------------
Q 007520 381 QEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMN-EMNQGLIMSRGGGQLLAKTASK------------------ 441 (600)
Q Consensus 381 ~~~iv~~G~I~~Lv~lL~~~~~~~v~~~Al~aL~NLa~~-~~~r~~I~~~G~I~~Lv~lL~~------------------ 441 (600)
+..+++.|+||+|+.+|. +++..++..|++||+||+.+ +.++..+++.|++++|+.+|..
T Consensus 155 ~~~vv~~Gaip~Lv~LL~-s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L 233 (529)
T 3tpo_A 155 TKAVVDGGAIPAFISLLA-SPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTL 233 (529)
T ss_dssp HHHHHHTTHHHHHHHHTT-CSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHc-CCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHH
Confidence 888999999999999998 77899999999999999987 7888888888888888776642
Q ss_pred ----------------------------CCCHHHHHHHHHHHHHHhCCc-hhHHHHHHcChHHHHHHHHcCCCHHHHHHH
Q 007520 442 ----------------------------TDDPQTLRMVAGALANLCGNE-KLHTMLEEDGAIKALLAMVRSGNIDVIAQV 492 (600)
Q Consensus 442 ----------------------------~~~~~v~~~Aa~aL~nLa~~~-e~r~~i~~~G~i~~Lv~lL~s~~~~v~~~A 492 (600)
++++.++..|+|+|++|+.++ +....++..|+++.|+.+|.++++.++..|
T Consensus 234 ~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a 313 (529)
T 3tpo_A 234 SNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPA 313 (529)
T ss_dssp HHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHH
T ss_pred HHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHH
Confidence 234455666777777776554 445567788999999999999999999999
Q ss_pred HHHHHHhhcCCchhhhhcchhhHHHHHhCCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcC-chhHHHHHHcccHHHHHHh
Q 007520 493 ARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSKTNSASTRRHVELALCHLAQN-EDNARDFISRGGAKELVQI 571 (600)
Q Consensus 493 ~~aL~nLa~~~~~~~~q~~~~~r~~l~e~g~l~~Lv~Ll~s~~~~v~~~Aa~aL~nLa~~-~~~~~~lv~~G~l~~Lv~l 571 (600)
+++|+||+.++ ...+..+++.|+++.|+.++.++++.++..|+|+|+||+.+ +.....+++.|+++.|+.+
T Consensus 314 ~~aL~nl~~~~--------~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~l 385 (529)
T 3tpo_A 314 LRAIGNIVTGT--------DEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGV 385 (529)
T ss_dssp HHHHHHHTTSC--------HHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHccc--------hHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHH
Confidence 99999998765 45667789999999999999999999999999999999875 5567778899999999999
Q ss_pred hhcCChHHHHHHHHHHH
Q 007520 572 SIESSREDIRNLAKKTM 588 (600)
Q Consensus 572 l~~~~~~~ir~~A~~~L 588 (600)
+.+++. .++..|..+|
T Consensus 386 L~~~~~-~v~~~A~~aL 401 (529)
T 3tpo_A 386 LSKADF-KTQKAAAWAI 401 (529)
T ss_dssp HHSSCH-HHHHHHHHHH
T ss_pred hcCCCH-HHHHHHHHHH
Confidence 998775 4555444444
No 17
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.93 E-value=3.9e-24 Score=236.59 Aligned_cols=274 Identities=17% Similarity=0.217 Sum_probs=236.3
Q ss_pred cccCchHHHhcccCCCC-ccccchHHHH---hhc-CchhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhC-Ccc
Q 007520 306 YTKDYISKGSSRFGAPM-SLQKSNPSRE---LSG-QRATIAKICDEVGLPKILQLLTSEDPDVQIHAVKVVANLAA-EDI 379 (600)
Q Consensus 306 ~~~g~i~~Lv~~L~s~~-~~~r~~a~~~---L~~-~~~~~~~i~e~GgV~~Lv~LL~s~~~~vr~~Aa~aL~nLa~-~~~ 379 (600)
+..|++|.|+.++.++. +..+..|+.+ ++. ++..+..++..|+++.|+.+|.++++.++..|+++|++++. ++.
T Consensus 114 ~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~ 193 (528)
T 4b8j_A 114 IQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPK 193 (528)
T ss_dssp HHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHH
T ss_pred HHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChh
Confidence 67899999999999886 6777777765 444 46778889999999999999999999999999999999997 466
Q ss_pred hHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcCCccHHHHHHhCchhhhHhhhccCCCHHHHHHHHHHHHHHh
Q 007520 380 NQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMNEMNQGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLC 459 (600)
Q Consensus 380 ~~~~iv~~G~I~~Lv~lL~~~~~~~v~~~Al~aL~NLa~~~~~r~~I~~~G~I~~Lv~lL~~~~~~~v~~~Aa~aL~nLa 459 (600)
++..++..|++++|+.+|..+.+..++..|+++|+||+.+..........|+++.|+.+|. ++++.++..++++|++|+
T Consensus 194 ~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~-~~~~~v~~~a~~aL~~l~ 272 (528)
T 4b8j_A 194 CRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIH-SNDEEVLTDACWALSYLS 272 (528)
T ss_dssp HHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCCHHHHTTHHHHHHHHTT-CCCHHHHHHHHHHHHHHT
T ss_pred hHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHH
Confidence 7889999999999999996678899999999999999998544455566899999999995 578899999999999999
Q ss_pred CCch-hHHHHHHcChHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchhhhhcchhhHHHHHhCCcHHHHHHhhcCC-CHH
Q 007520 460 GNEK-LHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSKTN-SAS 537 (600)
Q Consensus 460 ~~~e-~r~~i~~~G~i~~Lv~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~q~~~~~r~~l~e~g~l~~Lv~Ll~s~-~~~ 537 (600)
..+. ....+.+.|+++.|+.+|.++++.++..|+++|+||+.++ ......+++.|+++.|+.++.++ ++.
T Consensus 273 ~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~--------~~~~~~~~~~~~l~~L~~lL~~~~~~~ 344 (528)
T 4b8j_A 273 DGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGD--------DAQTQCIIDHQALPCLLSLLTQNLKKS 344 (528)
T ss_dssp SSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC--------HHHHHHHHTTTHHHHHHHHHHSCCCHH
T ss_pred cCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCC--------HHHHHHHHHhhhHHHHHHHHcCCCcHH
Confidence 7654 4467788999999999999999999999999999999765 44566788999999999999998 999
Q ss_pred HHHHHHHHHHHhhcC-chhHHHHHHcccHHHHHHhhhcCChHHHHHHHHHHHh
Q 007520 538 TRRHVELALCHLAQN-EDNARDFISRGGAKELVQISIESSREDIRNLAKKTMK 589 (600)
Q Consensus 538 v~~~Aa~aL~nLa~~-~~~~~~lv~~G~l~~Lv~ll~~~~~~~ir~~A~~~L~ 589 (600)
++..|+|+|+||+.+ +.....++..|+++.|+.++.+++ +.++..|..+|.
T Consensus 345 v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~-~~v~~~a~~aL~ 396 (528)
T 4b8j_A 345 IKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAE-FDIKKEAAWAIS 396 (528)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHSC-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcCC-HHHHHHHHHHHH
Confidence 999999999999864 456778889999999999998875 566666665554
No 18
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.93 E-value=2.4e-24 Score=214.47 Aligned_cols=234 Identities=22% Similarity=0.303 Sum_probs=210.9
Q ss_pred CCHHHHHHhhCCCCHHHHHHHHHHHHHhhC-CcchHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhc-CCccHH
Q 007520 347 VGLPKILQLLTSEDPDVQIHAVKVVANLAA-EDINQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAM-NEMNQG 424 (600)
Q Consensus 347 GgV~~Lv~LL~s~~~~vr~~Aa~aL~nLa~-~~~~~~~iv~~G~I~~Lv~lL~~~~~~~v~~~Al~aL~NLa~-~~~~r~ 424 (600)
...+.++.+|.+++++++..|+++|.++.. ++.++..+++.|+++.|+.+|. ++++.++..|+++|.||+. +++++.
T Consensus 12 ~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~-~~~~~v~~~a~~~L~~l~~~~~~~~~ 90 (252)
T 4db8_A 12 SELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLS-SPNEQILQEALWALSNIASGGNEQIQ 90 (252)
T ss_dssp CSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGG-CSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred chHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHc-CCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence 458999999999999999999999987665 6777889999999999999999 5678999999999999998 489999
Q ss_pred HHHHhCchhhhHhhhccCCCHHHHHHHHHHHHHHhCCchhH-HHHHHcChHHHHHHHHcCCCHHHHHHHHHHHHHhhcCC
Q 007520 425 LIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLCGNEKLH-TMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFAKCE 503 (600)
Q Consensus 425 ~I~~~G~I~~Lv~lL~~~~~~~v~~~Aa~aL~nLa~~~e~r-~~i~~~G~i~~Lv~lL~s~~~~v~~~A~~aL~nLa~~~ 503 (600)
.+++.|+++.|+.+|.+ +++.++..|+++|+||+.++..+ ..+.+.|+++.|+.+|.++++.++..|+++|+||+..+
T Consensus 91 ~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~ 169 (252)
T 4db8_A 91 AVIDAGALPALVQLLSS-PNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG 169 (252)
T ss_dssp HHHHTTHHHHHHHGGGC-SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSC
T ss_pred HHHHcCCHHHHHHHHcC-CCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence 99999999999999965 78899999999999999998887 88999999999999999999999999999999999765
Q ss_pred chhhhhcchhhHHHHHhCCcHHHHHHhhcCCCHHHHHHHHHHHHHhhc-CchhHHHHHHcccHHHHHHhhhcCChHHHHH
Q 007520 504 SRAIVQGQRKGRSHLMEDSALEWLIANSKTNSASTRRHVELALCHLAQ-NEDNARDFISRGGAKELVQISIESSREDIRN 582 (600)
Q Consensus 504 ~~~~~q~~~~~r~~l~e~g~l~~Lv~Ll~s~~~~v~~~Aa~aL~nLa~-~~~~~~~lv~~G~l~~Lv~ll~~~~~~~ir~ 582 (600)
+..+..+.+.|+++.|+.++.++++.++..|+++|++|+. ++..+..+++.|+++.|+.++.+++ +.++.
T Consensus 170 --------~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~-~~v~~ 240 (252)
T 4db8_A 170 --------NEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHEN-EKIQK 240 (252)
T ss_dssp --------HHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSS-SHHHH
T ss_pred --------hHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCC-HHHHH
Confidence 4566678899999999999999999999999999999985 5667888889999999999998765 57888
Q ss_pred HHHHHHhcC
Q 007520 583 LAKKTMKSN 591 (600)
Q Consensus 583 ~A~~~L~~~ 591 (600)
.|..+|.+.
T Consensus 241 ~A~~~L~~l 249 (252)
T 4db8_A 241 EAQEALEKL 249 (252)
T ss_dssp THHHHHHTT
T ss_pred HHHHHHHHH
Confidence 888777654
No 19
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.93 E-value=1.8e-24 Score=239.54 Aligned_cols=272 Identities=16% Similarity=0.217 Sum_probs=228.9
Q ss_pred cCchHHHhcccCCCCccccchHHHH----hhc-CchhHHHHHhcCCHHHHHHhhC-CCCHHHHHHHHHHHHHhhC-Ccch
Q 007520 308 KDYISKGSSRFGAPMSLQKSNPSRE----LSG-QRATIAKICDEVGLPKILQLLT-SEDPDVQIHAVKVVANLAA-EDIN 380 (600)
Q Consensus 308 ~g~i~~Lv~~L~s~~~~~r~~a~~~----L~~-~~~~~~~i~e~GgV~~Lv~LL~-s~~~~vr~~Aa~aL~nLa~-~~~~ 380 (600)
...++.+|..+.|+.......|+.. ++. ..+.+..+++.|+||+||.+|. ++++.++..|+++|+|++. ++++
T Consensus 56 ~~~i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~ 135 (510)
T 3ul1_B 56 NWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQ 135 (510)
T ss_dssp SCCHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHH
T ss_pred hhhHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHH
Confidence 3468999999999988777776654 443 4556789999999999999996 5678999999999999987 7778
Q ss_pred HHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcC-CccHHHHHHhCchhhhHhhhccCC----CHHHHHHHHHHH
Q 007520 381 QEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMN-EMNQGLIMSRGGGQLLAKTASKTD----DPQTLRMVAGAL 455 (600)
Q Consensus 381 ~~~iv~~G~I~~Lv~lL~~~~~~~v~~~Al~aL~NLa~~-~~~r~~I~~~G~I~~Lv~lL~~~~----~~~v~~~Aa~aL 455 (600)
+..+++.|+||+|+.+|. +++..++..|+++|+||+.+ +.++..+.+.|++++|+.+|.... ...+.+.++++|
T Consensus 136 ~~~vv~~GaIp~Lv~lL~-s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L 214 (510)
T 3ul1_B 136 TKAVVDGGAIPAFISLLA-SPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTL 214 (510)
T ss_dssp HHHHHHTTHHHHHHHHTT-CSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHc-CCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHH
Confidence 999999999999999998 77899999999999999987 788999999999999999996532 235788999999
Q ss_pred HHHhCCchhH-HHHHHcChHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchhhhhcchhhHHHHHhCCcHHHHHHhhcCC
Q 007520 456 ANLCGNEKLH-TMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSKTN 534 (600)
Q Consensus 456 ~nLa~~~e~r-~~i~~~G~i~~Lv~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~q~~~~~r~~l~e~g~l~~Lv~Ll~s~ 534 (600)
+|++.+.... ......|+++.|+.++.++++.++..|+++|++|+... ......+...|+++.|+.++.++
T Consensus 215 ~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~--------~~~~~~i~~~g~i~~Lv~lL~~~ 286 (510)
T 3ul1_B 215 SNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGP--------NERIEMVVKKGVVPQLVKLLGAT 286 (510)
T ss_dssp HHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSC--------HHHHHHHHTTTCHHHHHHHHTCS
T ss_pred HHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhch--------hhhHHHHHhcccchhhhhhhcCC
Confidence 9999765433 33344689999999999999999999999999999664 34556688899999999999999
Q ss_pred CHHHHHHHHHHHHHhhcC-chhHHHHHHcccHHHHHHhhhcCChHHHHHHHHHHHh
Q 007520 535 SASTRRHVELALCHLAQN-EDNARDFISRGGAKELVQISIESSREDIRNLAKKTMK 589 (600)
Q Consensus 535 ~~~v~~~Aa~aL~nLa~~-~~~~~~lv~~G~l~~Lv~ll~~~~~~~ir~~A~~~L~ 589 (600)
+..++..++.+|+|++.. +.....+++.|+++.|+.++.+++ +.++..|..+|.
T Consensus 287 ~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~-~~v~~~A~~aL~ 341 (510)
T 3ul1_B 287 ELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPK-TNIQKEATWTMS 341 (510)
T ss_dssp CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSS-HHHHHHHHHHHH
T ss_pred ChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCC-HHHHHHHHHHHH
Confidence 999999999999999765 457788889999999999998766 456666555554
No 20
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.93 E-value=6e-24 Score=235.07 Aligned_cols=274 Identities=17% Similarity=0.225 Sum_probs=234.5
Q ss_pred cCchHHHhcccCCCCccccchHHHH---h-hcCc-hhHHHHHhcCCHHHHHHhhCCCC-HHHHHHHHHHHHHhhC-Ccch
Q 007520 308 KDYISKGSSRFGAPMSLQKSNPSRE---L-SGQR-ATIAKICDEVGLPKILQLLTSED-PDVQIHAVKVVANLAA-EDIN 380 (600)
Q Consensus 308 ~g~i~~Lv~~L~s~~~~~r~~a~~~---L-~~~~-~~~~~i~e~GgV~~Lv~LL~s~~-~~vr~~Aa~aL~nLa~-~~~~ 380 (600)
...+|.++..+.++.+..+..|+.. + +... +....++..|++|.|+.+|.+++ +.++..|+++|++++. ++.+
T Consensus 73 ~~~l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~ 152 (528)
T 4b8j_A 73 LESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSEN 152 (528)
T ss_dssp --CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHH
Confidence 4568999999998887777777665 2 3443 67788999999999999999876 9999999999999998 5788
Q ss_pred HHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcC-CccHHHHHHhCchhhhHhhhccCCCHHHHHHHHHHHHHHh
Q 007520 381 QEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMN-EMNQGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLC 459 (600)
Q Consensus 381 ~~~iv~~G~I~~Lv~lL~~~~~~~v~~~Al~aL~NLa~~-~~~r~~I~~~G~I~~Lv~lL~~~~~~~v~~~Aa~aL~nLa 459 (600)
+..++..|++++|+.+|. ++++.++..|+++|+||+.+ +.++..+...|++++|+.+|..+.++.++..++++|+||+
T Consensus 153 ~~~~~~~g~i~~L~~lL~-~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~ 231 (528)
T 4b8j_A 153 TKVVIDHGAVPIFVKLLG-SSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFC 231 (528)
T ss_dssp HHHHHHTTHHHHHHHHTT-CSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCcHHHHHHHhc-CCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 999999999999999998 57899999999999999987 7789999999999999999966678899999999999999
Q ss_pred CCchhHHHHHHcChHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchhhhhcchhhHHHHHhCCcHHHHHHhhcCCCHHHH
Q 007520 460 GNEKLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSKTNSASTR 539 (600)
Q Consensus 460 ~~~e~r~~i~~~G~i~~Lv~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~q~~~~~r~~l~e~g~l~~Lv~Ll~s~~~~v~ 539 (600)
.+..........|+++.|+.++.++++.++..|+++|++|+... ......+.+.|+++.|+.++.++++.++
T Consensus 232 ~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~--------~~~~~~~~~~g~v~~Lv~lL~~~~~~v~ 303 (528)
T 4b8j_A 232 RGKPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGT--------NDKIQAVIEAGVCPRLVELLLHPSPSVL 303 (528)
T ss_dssp CSSSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSC--------HHHHHHHHHTTCHHHHHHHTTCSCHHHH
T ss_pred cCCCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCC--------HHHHHHHHHcCHHHHHHHHHcCCChhHH
Confidence 77444444556899999999999999999999999999999664 2344567889999999999999999999
Q ss_pred HHHHHHHHHhhcC-chhHHHHHHcccHHHHHHhhhcCChHHHHHHHHHHHhc
Q 007520 540 RHVELALCHLAQN-EDNARDFISRGGAKELVQISIESSREDIRNLAKKTMKS 590 (600)
Q Consensus 540 ~~Aa~aL~nLa~~-~~~~~~lv~~G~l~~Lv~ll~~~~~~~ir~~A~~~L~~ 590 (600)
..|+++|++|+.+ +.....++..|+++.|+.++.++..+.++..|..+|.+
T Consensus 304 ~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~n 355 (528)
T 4b8j_A 304 IPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISN 355 (528)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHH
Confidence 9999999999874 55677888999999999999987356677666655543
No 21
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.92 E-value=4.9e-23 Score=228.20 Aligned_cols=273 Identities=14% Similarity=0.156 Sum_probs=234.8
Q ss_pred cccCchHHHhcccCCC-CccccchHHHH---hhc-CchhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCC-cc
Q 007520 306 YTKDYISKGSSRFGAP-MSLQKSNPSRE---LSG-QRATIAKICDEVGLPKILQLLTSEDPDVQIHAVKVVANLAAE-DI 379 (600)
Q Consensus 306 ~~~g~i~~Lv~~L~s~-~~~~r~~a~~~---L~~-~~~~~~~i~e~GgV~~Lv~LL~s~~~~vr~~Aa~aL~nLa~~-~~ 379 (600)
+..|++|.|+.++.++ .+..+..|+.+ ++. ++.....++..|+++.|+.+|.++++.++..|+++|++++.+ +.
T Consensus 127 ~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~ 206 (530)
T 1wa5_B 127 IQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTD 206 (530)
T ss_dssp HHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHH
T ss_pred HHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCcc
Confidence 5689999999999987 67777777766 443 455777788999999999999999999999999999999984 67
Q ss_pred hHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcCC-ccHHHHHHhCchhhhHhhhccCCCHHHHHHHHHHHHHH
Q 007520 380 NQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMNE-MNQGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANL 458 (600)
Q Consensus 380 ~~~~iv~~G~I~~Lv~lL~~~~~~~v~~~Al~aL~NLa~~~-~~r~~I~~~G~I~~Lv~lL~~~~~~~v~~~Aa~aL~nL 458 (600)
++..++..|++++|+.++. +.+..++..|+++|+||+.+. .........|+++.|+.+|. ++++.++..++++|++|
T Consensus 207 ~~~~~~~~~~l~~L~~ll~-~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~-~~d~~v~~~a~~~L~~L 284 (530)
T 1wa5_B 207 YRDYVLQCNAMEPILGLFN-SNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIY-SMDTETLVDACWAISYL 284 (530)
T ss_dssp HHHHHHHTTCHHHHHHGGG-SCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTT-CCCHHHHHHHHHHHHHH
T ss_pred chHHHHHcCcHHHHHHHhc-cCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHc-CCCHHHHHHHHHHHHHH
Confidence 7888899999999999998 478899999999999999874 55556667899999999995 47889999999999999
Q ss_pred hCC-chhHHHHHHcChHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchhhhhcchhhHHHHHhCCcHHHHHHhhcCCCHH
Q 007520 459 CGN-EKLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSKTNSAS 537 (600)
Q Consensus 459 a~~-~e~r~~i~~~G~i~~Lv~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~q~~~~~r~~l~e~g~l~~Lv~Ll~s~~~~ 537 (600)
+.. ++....+.+.|+++.|+.+|.++++.++..|+++|+||+..+ +.....+.+.|+++.|+.++.++++.
T Consensus 285 ~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~--------~~~~~~~~~~~~l~~L~~lL~~~~~~ 356 (530)
T 1wa5_B 285 SDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGN--------DLQTQVVINAGVLPALRLLLSSPKEN 356 (530)
T ss_dssp HSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSC--------HHHHHHHHHTTHHHHHHHHTTCSCHH
T ss_pred hCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCC--------HHHHHHHHHcchHHHHHHHHcCCCHH
Confidence 965 567778888999999999999999999999999999999765 34555678899999999999999999
Q ss_pred HHHHHHHHHHHhhc-CchhHHHHHHcccHHHHHHhhhcCChHHHHHHHHHHHh
Q 007520 538 TRRHVELALCHLAQ-NEDNARDFISRGGAKELVQISIESSREDIRNLAKKTMK 589 (600)
Q Consensus 538 v~~~Aa~aL~nLa~-~~~~~~~lv~~G~l~~Lv~ll~~~~~~~ir~~A~~~L~ 589 (600)
++..|+|+|.+|+. ++.....++..|+++.|+.++.+++ +.++..|..+|.
T Consensus 357 vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~-~~v~~~a~~aL~ 408 (530)
T 1wa5_B 357 IKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAE-YKTKKEACWAIS 408 (530)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSC-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCC-HHHHHHHHHHHH
Confidence 99999999999986 4566778889999999999998765 456666665553
No 22
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.91 E-value=1.6e-22 Score=217.41 Aligned_cols=273 Identities=16% Similarity=0.168 Sum_probs=231.8
Q ss_pred ccc-CchHHHhcccCCC-CccccchHHHH---hhc-CchhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCC-c
Q 007520 306 YTK-DYISKGSSRFGAP-MSLQKSNPSRE---LSG-QRATIAKICDEVGLPKILQLLTSEDPDVQIHAVKVVANLAAE-D 378 (600)
Q Consensus 306 ~~~-g~i~~Lv~~L~s~-~~~~r~~a~~~---L~~-~~~~~~~i~e~GgV~~Lv~LL~s~~~~vr~~Aa~aL~nLa~~-~ 378 (600)
+.. |++|.|+..++++ .+..+..++.. ++. +......++..|+++.|+.+|.++++.++..|+++|++++.+ +
T Consensus 60 ~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~ 139 (450)
T 2jdq_A 60 ISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDST 139 (450)
T ss_dssp HTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCH
T ss_pred HHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCH
Confidence 455 9999999999988 66777777765 333 456667788899999999999999999999999999999984 5
Q ss_pred chHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcC--CccHHHHHHhCchhhhHhhhccCCCHHHHHHHHHHHH
Q 007520 379 INQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMN--EMNQGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALA 456 (600)
Q Consensus 379 ~~~~~iv~~G~I~~Lv~lL~~~~~~~v~~~Al~aL~NLa~~--~~~r~~I~~~G~I~~Lv~lL~~~~~~~v~~~Aa~aL~ 456 (600)
.++..++..|++++|+.++.++.+..++..|+++|+||+.+ +.....++ .|++|.|+.++. ++++.++..++++|.
T Consensus 140 ~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~l~~L~~~l~-~~~~~v~~~a~~~L~ 217 (450)
T 2jdq_A 140 MCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKV-SPCLNVLSWLLF-VSDTDVLADACWALS 217 (450)
T ss_dssp HHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGGT-GGGHHHHHHHTT-CCCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHH-HHHHHHHHHHHc-cCCHHHHHHHHHHHH
Confidence 67888999999999999998667899999999999999976 33333333 789999999995 478899999999999
Q ss_pred HHhCC-chhHHHHHHcChHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchhhhhcchhhHHHHHhCCcHHHHHHhhcCCC
Q 007520 457 NLCGN-EKLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSKTNS 535 (600)
Q Consensus 457 nLa~~-~e~r~~i~~~G~i~~Lv~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~q~~~~~r~~l~e~g~l~~Lv~Ll~s~~ 535 (600)
+|+.. ++....+...|+++.|+.++.++++.++..|+++|++|+..+ +.....+.+.|+++.|+.++.+++
T Consensus 218 ~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~--------~~~~~~~~~~~~l~~L~~ll~~~~ 289 (450)
T 2jdq_A 218 YLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGD--------DIQTQVILNCSALQSLLHLLSSPK 289 (450)
T ss_dssp HHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC--------HHHHHHHHTTTHHHHHHHHTTCSS
T ss_pred HHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCC--------hHHHHHHHHCccHHHHHHHHcCCC
Confidence 99975 567777888999999999999999999999999999999765 334556788899999999999999
Q ss_pred HHHHHHHHHHHHHhhc-CchhHHHHHHcccHHHHHHhhhcCChHHHHHHHHHHHh
Q 007520 536 ASTRRHVELALCHLAQ-NEDNARDFISRGGAKELVQISIESSREDIRNLAKKTMK 589 (600)
Q Consensus 536 ~~v~~~Aa~aL~nLa~-~~~~~~~lv~~G~l~~Lv~ll~~~~~~~ir~~A~~~L~ 589 (600)
+.++..|+++|.+|+. ++.....+++.|+++.|+.++.+++ +.++..|..+|.
T Consensus 290 ~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~-~~v~~~a~~~L~ 343 (450)
T 2jdq_A 290 ESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAE-FRTRKEAAWAIT 343 (450)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSC-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCC-HHHHHHHHHHHH
Confidence 9999999999999986 5567778888999999999999865 456666655543
No 23
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.91 E-value=1e-22 Score=197.32 Aligned_cols=199 Identities=24% Similarity=0.302 Sum_probs=179.1
Q ss_pred HHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhC-CcchHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhc-CC
Q 007520 343 ICDEVGLPKILQLLTSEDPDVQIHAVKVVANLAA-EDINQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAM-NE 420 (600)
Q Consensus 343 i~e~GgV~~Lv~LL~s~~~~vr~~Aa~aL~nLa~-~~~~~~~iv~~G~I~~Lv~lL~~~~~~~v~~~Al~aL~NLa~-~~ 420 (600)
....|+.+.|+.+|.++++.++..|+++|.+++. ++.++..+++.|+++.|+.+|. ++++.++..|+++|.||+. ++
T Consensus 8 ~~~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~-~~~~~v~~~a~~~L~~l~~~~~ 86 (210)
T 4db6_A 8 HHHGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLS-SPNEQILQEALWALSNIASGGN 86 (210)
T ss_dssp -----CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTT-CSCHHHHHHHHHHHHHHTTSCH
T ss_pred ccccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHc-CCCHHHHHHHHHHHHHHhcCCc
Confidence 3456789999999999999999999999999996 7788999999999999999998 5689999999999999996 48
Q ss_pred ccHHHHHHhCchhhhHhhhccCCCHHHHHHHHHHHHHHhC-CchhHHHHHHcChHHHHHHHHcCCCHHHHHHHHHHHHHh
Q 007520 421 MNQGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLCG-NEKLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANF 499 (600)
Q Consensus 421 ~~r~~I~~~G~I~~Lv~lL~~~~~~~v~~~Aa~aL~nLa~-~~e~r~~i~~~G~i~~Lv~lL~s~~~~v~~~A~~aL~nL 499 (600)
.++..+++.|+++.|+.+|.+ +++.++..|+++|+||+. +++.+..+.+.|+++.|+.++.++++.++..|+++|+||
T Consensus 87 ~~~~~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l 165 (210)
T 4db6_A 87 EQIQAVIDAGALPALVQLLSS-PNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNI 165 (210)
T ss_dssp HHHHHHHHTTCHHHHHHHTTC-SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHcC-CcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 889999999999999999954 788999999999999995 567778889999999999999999999999999999999
Q ss_pred hcCCchhhhhcchhhHHHHHhCCcHHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 007520 500 AKCESRAIVQGQRKGRSHLMEDSALEWLIANSKTNSASTRRHVELALCHLAQ 551 (600)
Q Consensus 500 a~~~~~~~~q~~~~~r~~l~e~g~l~~Lv~Ll~s~~~~v~~~Aa~aL~nLa~ 551 (600)
+..+ +..+..+.+.|+++.|+.++.++++.++..|+++|.+|+.
T Consensus 166 ~~~~--------~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 166 ASGG--------NEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp HTSC--------HHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred HcCC--------cHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 9764 4567789999999999999999999999999999999975
No 24
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.90 E-value=3.2e-22 Score=221.63 Aligned_cols=274 Identities=12% Similarity=0.178 Sum_probs=233.7
Q ss_pred ccCchHHHhcccCCCCccccchHHHH---h-hc-CchhHHHHHhcCCHHHHHHhhCCC-CHHHHHHHHHHHHHhhC-Ccc
Q 007520 307 TKDYISKGSSRFGAPMSLQKSNPSRE---L-SG-QRATIAKICDEVGLPKILQLLTSE-DPDVQIHAVKVVANLAA-EDI 379 (600)
Q Consensus 307 ~~g~i~~Lv~~L~s~~~~~r~~a~~~---L-~~-~~~~~~~i~e~GgV~~Lv~LL~s~-~~~vr~~Aa~aL~nLa~-~~~ 379 (600)
..+.++.++..+.++.+..+..|+.. + +. ..+.+..++..|++|.|+.+|.++ ++.++..|+++|++++. ++.
T Consensus 85 ~~~~i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~ 164 (530)
T 1wa5_B 85 LQQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSA 164 (530)
T ss_dssp --CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHH
T ss_pred hHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHH
Confidence 45789999999999887777777665 3 22 245667888999999999999987 89999999999999998 566
Q ss_pred hHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcC-CccHHHHHHhCchhhhHhhhccCCCHHHHHHHHHHHHHH
Q 007520 380 NQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMN-EMNQGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANL 458 (600)
Q Consensus 380 ~~~~iv~~G~I~~Lv~lL~~~~~~~v~~~Al~aL~NLa~~-~~~r~~I~~~G~I~~Lv~lL~~~~~~~v~~~Aa~aL~nL 458 (600)
++..++..|++++|+.+|. ++++.++..|+++|+||+.. +.++..++..|+++.|+.+|.. .++.++..|+++|++|
T Consensus 165 ~~~~~~~~g~i~~Lv~lL~-~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~-~~~~v~~~a~~~L~~L 242 (530)
T 1wa5_B 165 QTKVVVDADAVPLFIQLLY-TGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNS-NKPSLIRTATWTLSNL 242 (530)
T ss_dssp HHHHHHHTTCHHHHHHHHH-HCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGS-CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHc-CCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhcc-CCHHHHHHHHHHHHHH
Confidence 7888889999999999998 57899999999999999987 6788899999999999999965 7889999999999999
Q ss_pred hCCc-hhHHHHHHcChHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchhhhhcchhhHHHHHhCCcHHHHHHhhcCCCHH
Q 007520 459 CGNE-KLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSKTNSAS 537 (600)
Q Consensus 459 a~~~-e~r~~i~~~G~i~~Lv~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~q~~~~~r~~l~e~g~l~~Lv~Ll~s~~~~ 537 (600)
+.+. .........|+++.|+.++.++++.++..|+++|++|+... +.....+.+.|+++.|+.++.++++.
T Consensus 243 ~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~--------~~~~~~~~~~~~v~~Lv~lL~~~~~~ 314 (530)
T 1wa5_B 243 CRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGP--------QEAIQAVIDVRIPKRLVELLSHESTL 314 (530)
T ss_dssp HCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSC--------HHHHHHHHHTTCHHHHHHGGGCSCHH
T ss_pred hCCCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCC--------HHHHHHHHhcCcHHHHHHHHCCCChh
Confidence 9664 44445567899999999999999999999999999999664 34556688899999999999999999
Q ss_pred HHHHHHHHHHHhhcC-chhHHHHHHcccHHHHHHhhhcCChHHHHHHHHHHHhcC
Q 007520 538 TRRHVELALCHLAQN-EDNARDFISRGGAKELVQISIESSREDIRNLAKKTMKSN 591 (600)
Q Consensus 538 v~~~Aa~aL~nLa~~-~~~~~~lv~~G~l~~Lv~ll~~~~~~~ir~~A~~~L~~~ 591 (600)
++..|+++|++|+.+ +.....++..|+++.|+.++.+++ +.++..|..+|.+.
T Consensus 315 v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~-~~vr~~A~~aL~~l 368 (530)
T 1wa5_B 315 VQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPK-ENIKKEACWTISNI 368 (530)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCC-HHHHHHHHHHHHHH
Confidence 999999999999875 456677788999999999998775 56777777666543
No 25
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.90 E-value=4.8e-23 Score=226.34 Aligned_cols=272 Identities=19% Similarity=0.214 Sum_probs=235.3
Q ss_pred cCchHHHhcccCCC-CccccchHHHH---hhcCchhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCC-cchHH
Q 007520 308 KDYISKGSSRFGAP-MSLQKSNPSRE---LSGQRATIAKICDEVGLPKILQLLTSEDPDVQIHAVKVVANLAAE-DINQE 382 (600)
Q Consensus 308 ~g~i~~Lv~~L~s~-~~~~r~~a~~~---L~~~~~~~~~i~e~GgV~~Lv~LL~s~~~~vr~~Aa~aL~nLa~~-~~~~~ 382 (600)
.|+++.|+..+.++ ....+..++.. ++.++.++..+++.|+++.|+.+|.++++.++..|+++|++++.+ +..+.
T Consensus 58 ~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~ 137 (529)
T 1jdh_A 58 PQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKM 137 (529)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHH
T ss_pred cchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHH
Confidence 48899999999765 55556556554 666777888899999999999999999999999999999999984 66788
Q ss_pred HHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcC-CccHHHHHHhCchhhhHhhhccCCCHHHHHHHHHHHHHHhCC
Q 007520 383 KIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMN-EMNQGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLCGN 461 (600)
Q Consensus 383 ~iv~~G~I~~Lv~lL~~~~~~~v~~~Al~aL~NLa~~-~~~r~~I~~~G~I~~Lv~lL~~~~~~~v~~~Aa~aL~nLa~~ 461 (600)
.+++.|++|.|+.+|. +++..++..++.+|++|+.. ++++..+++.|+++.|+.+|..+.+......++.+|+||+.+
T Consensus 138 ~i~~~g~i~~L~~ll~-~~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~ 216 (529)
T 1jdh_A 138 AVRLAGGLQKMVALLN-KTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC 216 (529)
T ss_dssp HHHHHTHHHHHHHGGG-CCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS
T ss_pred HHHHcCCHHHHHHHHh-cCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcC
Confidence 8889999999999998 56888999999999999985 889999999999999999998766667777888899999999
Q ss_pred chhHHHHHHcChHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchhhhhcchhhHHHHHhCCcHHHHHHhhcCCCHHHHHH
Q 007520 462 EKLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSKTNSASTRRH 541 (600)
Q Consensus 462 ~e~r~~i~~~G~i~~Lv~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~q~~~~~r~~l~e~g~l~~Lv~Ll~s~~~~v~~~ 541 (600)
++++..+.+.|+++.|+.++.++++.++..++++|.||+...+.. ....|++|.|+.++.++++.++..
T Consensus 217 ~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~-----------~~~~~~i~~L~~ll~~~~~~v~~~ 285 (529)
T 1jdh_A 217 SSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ-----------EGMEGLLGTLVQLLGSDDINVVTC 285 (529)
T ss_dssp TTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTC-----------SCCHHHHHHHHHHTTCSCHHHHHH
T ss_pred cccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhh-----------HHHHhHHHHHHHHHcCCCHHHHHH
Confidence 999999999999999999999999999999999999999664321 112479999999999999999999
Q ss_pred HHHHHHHhhcC-chhHHHHHHcccHHHHHHhhhcCC-hHHHHHHHHHHHhcC
Q 007520 542 VELALCHLAQN-EDNARDFISRGGAKELVQISIESS-REDIRNLAKKTMKSN 591 (600)
Q Consensus 542 Aa~aL~nLa~~-~~~~~~lv~~G~l~~Lv~ll~~~~-~~~ir~~A~~~L~~~ 591 (600)
|+++|++|+.+ ++++..+.+.|+++.|+.++.+++ .+.++..|..+|.+.
T Consensus 286 a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl 337 (529)
T 1jdh_A 286 AAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHL 337 (529)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHH
Confidence 99999999876 468889999999999999998643 367888888777543
No 26
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.90 E-value=3e-23 Score=227.94 Aligned_cols=273 Identities=19% Similarity=0.199 Sum_probs=224.3
Q ss_pred cccCchHHHhcccCCCCccccchHHHH---hhcCchhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCC-cchH
Q 007520 306 YTKDYISKGSSRFGAPMSLQKSNPSRE---LSGQRATIAKICDEVGLPKILQLLTSEDPDVQIHAVKVVANLAAE-DINQ 381 (600)
Q Consensus 306 ~~~g~i~~Lv~~L~s~~~~~r~~a~~~---L~~~~~~~~~i~e~GgV~~Lv~LL~s~~~~vr~~Aa~aL~nLa~~-~~~~ 381 (600)
...|+++.|+.++.++....+..+++. ++.+..... ...|+++.|+.++.++++.++..|+++|++|+.+ +.++
T Consensus 224 ~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~--~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~ 301 (529)
T 1jdh_A 224 VEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQE--GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNK 301 (529)
T ss_dssp HHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCS--CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHH
T ss_pred HHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhhH--HHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHH
Confidence 578999999999998876666666655 433322111 1236799999999999999999999999999984 5689
Q ss_pred HHHHHcCCHHHHHHHHcc-CCCHHHHHHHHHHHHHhhcC-Cc---cHHHHHHhCchhhhHhhhccCCCHHHHHHHHHHHH
Q 007520 382 EKIVEEGGLDALLLLLRT-SQNTTILRVASGAIANLAMN-EM---NQGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALA 456 (600)
Q Consensus 382 ~~iv~~G~I~~Lv~lL~~-~~~~~v~~~Al~aL~NLa~~-~~---~r~~I~~~G~I~~Lv~lL~~~~~~~v~~~Aa~aL~ 456 (600)
..+.+.|+++.|+.+|.. +.++.++..|+++|+||+.+ +. .+..+.+.|+++.|+.+|....++.++..++++|+
T Consensus 302 ~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~ 381 (529)
T 1jdh_A 302 MMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIR 381 (529)
T ss_dssp HHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHH
T ss_pred HHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHH
Confidence 999999999999999975 34478999999999999986 33 47789999999999999976555689999999999
Q ss_pred HHhCCchhHHHHHHcChHHHHHHHHcCCCHHHHHHHHHHHHH----------------------hhcCCchhhhhcchhh
Q 007520 457 NLCGNEKLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLAN----------------------FAKCESRAIVQGQRKG 514 (600)
Q Consensus 457 nLa~~~e~r~~i~~~G~i~~Lv~lL~s~~~~v~~~A~~aL~n----------------------La~~~~~~~~q~~~~~ 514 (600)
|++.++..+..+.+.|+++.|+.++.++++.++..|+|++.| |+.. +.+
T Consensus 382 nl~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~n~~~~~~~~~~~i~~~~~~al~~L~~~---------~~~ 452 (529)
T 1jdh_A 382 NLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARD---------VHN 452 (529)
T ss_dssp HHTTSGGGHHHHHHTTHHHHHHHHHHHHHHHHC-----------CBTTBCHHHHHHHHHHHHHHHTTS---------HHH
T ss_pred HHhcChhhhHHHHHcCCHHHHHHHHHHHhHHHHHHHhcccCchhhhccccHHHHHHHHHHHHHHHhcC---------chH
Confidence 999999899999999999999999988777777766666665 4322 467
Q ss_pred HHHHHhCCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCchhHHHHHHcccHHHHHHhhhcCChHHHHHHHHHHHhc
Q 007520 515 RSHLMEDSALEWLIANSKTNSASTRRHVELALCHLAQNEDNARDFISRGGAKELVQISIESSREDIRNLAKKTMKS 590 (600)
Q Consensus 515 r~~l~e~g~l~~Lv~Ll~s~~~~v~~~Aa~aL~nLa~~~~~~~~lv~~G~l~~Lv~ll~~~~~~~ir~~A~~~L~~ 590 (600)
+..+.+.|+++.|+.++.++++.++..|+++|++|+.+++.+..+.+.|+++.|..++.+++ ++++..|..+|..
T Consensus 453 ~~~l~~~~~v~~l~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~i~~~~~~~~L~~l~~~~~-~~v~~~a~~aL~~ 527 (529)
T 1jdh_A 453 RIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRN-EGVATYAAAVLFR 527 (529)
T ss_dssp HHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGGCSS-HHHHHHHHHHHHH
T ss_pred HHHHhccCCccHHHHHHcCCchHHHHHHHHHHHHHhcCHHHHHHHHHcCChHHHHHHhcCCC-HHHHHHHHHHHHh
Confidence 78899999999999999999999999999999999988889999999999999999998765 6799998888764
No 27
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.90 E-value=2.8e-22 Score=215.38 Aligned_cols=272 Identities=16% Similarity=0.170 Sum_probs=231.0
Q ss_pred cccCchHHHhcccCCCCccccchHHHH---hhcC-chhHHHHHhcCCHHHHHHhhCC-CCHHHHHHHHHHHHHhhCC--c
Q 007520 306 YTKDYISKGSSRFGAPMSLQKSNPSRE---LSGQ-RATIAKICDEVGLPKILQLLTS-EDPDVQIHAVKVVANLAAE--D 378 (600)
Q Consensus 306 ~~~g~i~~Lv~~L~s~~~~~r~~a~~~---L~~~-~~~~~~i~e~GgV~~Lv~LL~s-~~~~vr~~Aa~aL~nLa~~--~ 378 (600)
+..|++|.|+.++.++.+..+..++.. ++.+ +..+..++..|+++.|+.++.+ .+..++..|+++|++++.+ +
T Consensus 104 ~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~ 183 (450)
T 2jdq_A 104 IQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSP 183 (450)
T ss_dssp HHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSS
T ss_pred HhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCC
Confidence 468999999999999888888877766 4444 4567778889999999999985 7899999999999999974 3
Q ss_pred chHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcC-CccHHHHHHhCchhhhHhhhccCCCHHHHHHHHHHHHH
Q 007520 379 INQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMN-EMNQGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALAN 457 (600)
Q Consensus 379 ~~~~~iv~~G~I~~Lv~lL~~~~~~~v~~~Al~aL~NLa~~-~~~r~~I~~~G~I~~Lv~lL~~~~~~~v~~~Aa~aL~n 457 (600)
.....++ .|++|.|+.++. +.++.++..++++|.+|+.+ ++....++..|+++.|+.+|. ++++.++..|+++|++
T Consensus 184 ~~~~~~~-~~~l~~L~~~l~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~-~~~~~v~~~a~~~L~~ 260 (450)
T 2jdq_A 184 PPEFAKV-SPCLNVLSWLLF-VSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLM-HNDYKVVSPALRAVGN 260 (450)
T ss_dssp CCCGGGT-GGGHHHHHHHTT-CCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTT-CSCHHHHHHHHHHHHH
T ss_pred CCCHHHH-HHHHHHHHHHHc-cCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHC-CCchhHHHHHHHHHHH
Confidence 3333333 779999999998 66889999999999999987 567788888999999999995 5788999999999999
Q ss_pred HhCC-chhHHHHHHcChHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchhhhhcchhhHHHHHhCCcHHHHHHhhcCCCH
Q 007520 458 LCGN-EKLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSKTNSA 536 (600)
Q Consensus 458 La~~-~e~r~~i~~~G~i~~Lv~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~q~~~~~r~~l~e~g~l~~Lv~Ll~s~~~ 536 (600)
|+.. +.....+.+.|+++.|+.++.++++.++..|+++|+||+.++ +.....+.+.|++|.|+.++.++++
T Consensus 261 l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~--------~~~~~~~~~~~~l~~L~~~l~~~~~ 332 (450)
T 2jdq_A 261 IVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGN--------RAQIQTVIDANIFPALISILQTAEF 332 (450)
T ss_dssp HTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSC--------HHHHHHHHHTTHHHHHHHHHHHSCH
T ss_pred HhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC--------HHHHHHHHHCCCHHHHHHHHhcCCH
Confidence 9865 455667788899999999999999999999999999999754 3455568889999999999999999
Q ss_pred HHHHHHHHHHHHhhc--CchhHHHHHHcccHHHHHHhhhcCChHHHHHHHHHHHh
Q 007520 537 STRRHVELALCHLAQ--NEDNARDFISRGGAKELVQISIESSREDIRNLAKKTMK 589 (600)
Q Consensus 537 ~v~~~Aa~aL~nLa~--~~~~~~~lv~~G~l~~Lv~ll~~~~~~~ir~~A~~~L~ 589 (600)
.++..|+++|++|+. +++....++..|+++.|+.++...+ +.++..|..+|.
T Consensus 333 ~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~-~~v~~~a~~aL~ 386 (450)
T 2jdq_A 333 RTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMD-SKIVQVALNGLE 386 (450)
T ss_dssp HHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSC-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCC-HHHHHHHHHHHH
Confidence 999999999999986 4567788889999999999998765 567777765554
No 28
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.90 E-value=4.3e-23 Score=205.66 Aligned_cols=195 Identities=20% Similarity=0.270 Sum_probs=173.2
Q ss_pred CHHHHHHhhCCCCH--HHHHHHHHHHHHhhC-CcchHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcC-CccH
Q 007520 348 GLPKILQLLTSEDP--DVQIHAVKVVANLAA-EDINQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMN-EMNQ 423 (600)
Q Consensus 348 gV~~Lv~LL~s~~~--~vr~~Aa~aL~nLa~-~~~~~~~iv~~G~I~~Lv~lL~~~~~~~v~~~Al~aL~NLa~~-~~~r 423 (600)
.+|.|+.+|.++++ .++..|+.+|.+++. +++++..|++.|+||+|+.+|. ++++.++..|+++|+||+.. ++++
T Consensus 9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~-s~~~~vq~~Aa~aL~nLa~~~~~nk 87 (233)
T 3tt9_A 9 TLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLK-VQNEDVQRAVCGALRNLVFEDNDNK 87 (233)
T ss_dssp CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGG-CCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHc-CCCHHHHHHHHHHHHHHHhCCHHHH
Confidence 48999999999887 899999999999997 7889999999999999999998 67899999999999999984 8999
Q ss_pred HHHHHhCchhhhHhhhccCCCHHHHHHHHHHHHHHhCCchhHHHHHHcChHHHHHHHHc----------------CCCHH
Q 007520 424 GLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLCGNEKLHTMLEEDGAIKALLAMVR----------------SGNID 487 (600)
Q Consensus 424 ~~I~~~G~I~~Lv~lL~~~~~~~v~~~Aa~aL~nLa~~~e~r~~i~~~G~i~~Lv~lL~----------------s~~~~ 487 (600)
..|++.|+||+|+.+|..++++.+++.|+++||||+..+.++..|++ +++++|+.++. ..++.
T Consensus 88 ~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~-~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~ 166 (233)
T 3tt9_A 88 LEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMIT-EALLTLTENIIIPFSGWPEGDYPKANGLLDFD 166 (233)
T ss_dssp HHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHH-HHHHHHCCCCCHHHHCCCGGGCCCCCTTCCHH
T ss_pred HHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHh-ccHHHHHHHHhccccCCcccccccccccchHH
Confidence 99999999999999997567889999999999999999999999887 47999887652 13679
Q ss_pred HHHHHHHHHHHhhcCCchhhhhcchhhHHHHHhC-CcHHHHHHhhcCC------CHHHHHHHHHHHHHhhcC
Q 007520 488 VIAQVARGLANFAKCESRAIVQGQRKGRSHLMED-SALEWLIANSKTN------SASTRRHVELALCHLAQN 552 (600)
Q Consensus 488 v~~~A~~aL~nLa~~~~~~~~q~~~~~r~~l~e~-g~l~~Lv~Ll~s~------~~~v~~~Aa~aL~nLa~~ 552 (600)
++.+|+++|+||+..+ +++|..|.+. |+|+.|+.+++.. +...+++|+.+|+||+..
T Consensus 167 v~~na~~~L~nLss~~--------~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~ 230 (233)
T 3tt9_A 167 IFYNVTGCLRNMSSAG--------ADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ 230 (233)
T ss_dssp HHHHHHHHHHHHTTSC--------HHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHhcCC--------HHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence 9999999999999754 5688999885 6789999998752 668999999999999864
No 29
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.89 E-value=3.8e-22 Score=226.77 Aligned_cols=272 Identities=19% Similarity=0.220 Sum_probs=235.8
Q ss_pred cCchHHHhcccCCC-CccccchHHHH---hhcCchhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhC-CcchHH
Q 007520 308 KDYISKGSSRFGAP-MSLQKSNPSRE---LSGQRATIAKICDEVGLPKILQLLTSEDPDVQIHAVKVVANLAA-EDINQE 382 (600)
Q Consensus 308 ~g~i~~Lv~~L~s~-~~~~r~~a~~~---L~~~~~~~~~i~e~GgV~~Lv~LL~s~~~~vr~~Aa~aL~nLa~-~~~~~~ 382 (600)
.|+++.|+..+.++ ....+..++.. ++.+..++..+++.|+++.|+.+|.++++.++..|+.+|.|++. .+..+.
T Consensus 55 ~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~ 134 (644)
T 2z6h_A 55 PQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKM 134 (644)
T ss_dssp HHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHH
T ss_pred cChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHH
Confidence 48899999999875 55566666654 66677788889999999999999999999999999999999998 466788
Q ss_pred HHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhc-CCccHHHHHHhCchhhhHhhhccCCCHHHHHHHHHHHHHHhCC
Q 007520 383 KIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAM-NEMNQGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLCGN 461 (600)
Q Consensus 383 ~iv~~G~I~~Lv~lL~~~~~~~v~~~Al~aL~NLa~-~~~~r~~I~~~G~I~~Lv~lL~~~~~~~v~~~Aa~aL~nLa~~ 461 (600)
.+++.|+++.|+.+|. +++..++..++.+|++|+. +++++..+++.|+++.|+.+|.......++..++.+|+||+.+
T Consensus 135 ~v~~~g~i~~Lv~lL~-~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~ 213 (644)
T 2z6h_A 135 AVRLAGGLQKMVALLN-KTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC 213 (644)
T ss_dssp HHHHTTHHHHHHHGGG-CCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTC
T ss_pred HHHHCCChHHHHHHHC-cCCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcC
Confidence 8889999999999998 5577888889999999997 5899999999999999999998766667888999999999999
Q ss_pred chhHHHHHHcChHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchhhhhcchhhHHHHHhCCcHHHHHHhhcCCCHHHHHH
Q 007520 462 EKLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSKTNSASTRRH 541 (600)
Q Consensus 462 ~e~r~~i~~~G~i~~Lv~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~q~~~~~r~~l~e~g~l~~Lv~Ll~s~~~~v~~~ 541 (600)
+.++..+++.|+++.|+.++.++++.++..++++|+||+...+.. ....|+++.|+.++.++++.++..
T Consensus 214 ~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~-----------~~~~~~i~~Lv~lL~~~d~~v~~~ 282 (644)
T 2z6h_A 214 SSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ-----------EGMEGLLGTLVQLLGSDDINVVTC 282 (644)
T ss_dssp TTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTTC-----------CSCHHHHHHHHHHTTCSCHHHHHH
T ss_pred cccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchhh-----------hhhhhHHHHHHHHHcCCCHHHHHH
Confidence 999999999999999999999999999999999999998654221 112378999999999999999999
Q ss_pred HHHHHHHhhcC-chhHHHHHHcccHHHHHHhhhcCC-hHHHHHHHHHHHhcC
Q 007520 542 VELALCHLAQN-EDNARDFISRGGAKELVQISIESS-REDIRNLAKKTMKSN 591 (600)
Q Consensus 542 Aa~aL~nLa~~-~~~~~~lv~~G~l~~Lv~ll~~~~-~~~ir~~A~~~L~~~ 591 (600)
|+++|++|+.+ +.++..+++.|+++.|+.++.+++ .+.++..|..+|.+.
T Consensus 283 a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL 334 (644)
T 2z6h_A 283 AAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHL 334 (644)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHH
Confidence 99999999875 467888899999999999998744 367888888777554
No 30
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.88 E-value=1.4e-21 Score=222.00 Aligned_cols=274 Identities=18% Similarity=0.182 Sum_probs=233.5
Q ss_pred cccCchHHHhcccCCCCccccchHHHH---hhc-CchhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhC-Ccch
Q 007520 306 YTKDYISKGSSRFGAPMSLQKSNPSRE---LSG-QRATIAKICDEVGLPKILQLLTSEDPDVQIHAVKVVANLAA-EDIN 380 (600)
Q Consensus 306 ~~~g~i~~Lv~~L~s~~~~~r~~a~~~---L~~-~~~~~~~i~e~GgV~~Lv~LL~s~~~~vr~~Aa~aL~nLa~-~~~~ 380 (600)
+..|+++.|+.+++++....+..++.+ ++. ++..+..+++.|+++.|+.+|.++++.++..++.+|.+++. ++.+
T Consensus 95 ~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~ 174 (644)
T 2z6h_A 95 FKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQES 174 (644)
T ss_dssp HTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHH
Confidence 677999999999999887777777765 333 45667778899999999999999999999999999999997 7889
Q ss_pred HHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcCCccHHHHHHhCchhhhHhhhccCCCHHHHHHHHHHHHHHhC
Q 007520 381 QEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMNEMNQGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLCG 460 (600)
Q Consensus 381 ~~~iv~~G~I~~Lv~lL~~~~~~~v~~~Al~aL~NLa~~~~~r~~I~~~G~I~~Lv~lL~~~~~~~v~~~Aa~aL~nLa~ 460 (600)
+..++..|+++.|+.+|.+.....++..++.+|+||+.++.++..+++.|+++.|+.++.. .++.++..++++|+|||.
T Consensus 175 ~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~ll~~-~~~~~~~~a~~~L~nL~~ 253 (644)
T 2z6h_A 175 KLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTD-PSQRLVQNCLWTLRNLSD 253 (644)
T ss_dssp HHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHHHHHHHTTHHHHHHTTTTC-SCHHHHHHHHHHHHHHGG
T ss_pred HHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhc-CCHHHHHHHHHHHHHHhh
Confidence 9999999999999999997777888899999999999999999999999999999999965 678999999999999986
Q ss_pred CchhHHHHHHcChHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchhhhhcchhhHHHHHhCCcHHHHHHhhcCC--CHHH
Q 007520 461 NEKLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSKTN--SAST 538 (600)
Q Consensus 461 ~~e~r~~i~~~G~i~~Lv~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~q~~~~~r~~l~e~g~l~~Lv~Ll~s~--~~~v 538 (600)
..... ....|+++.|+.++.++++.++..|+++|++|+..+ +..+..+.+.|+++.|+.++.+. .+.+
T Consensus 254 ~~~~~--~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~--------~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v 323 (644)
T 2z6h_A 254 AATKQ--EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNN--------YKNKMMVCQVGGIEALVRTVLRAGDREDI 323 (644)
T ss_dssp GCTTC--CSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC--------HHHHHHHHHTTHHHHHHHHHHHHTTCHHH
T ss_pred cchhh--hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC--------HHHHHHHHHcCCHHHHHHHHHccCCcHHH
Confidence 53221 122378999999999999999999999999999654 45678899999999999998763 3799
Q ss_pred HHHHHHHHHHhhcCch----hHHHHHHcccHHHHHHhhhcCChHHHHHHHHHHHhc
Q 007520 539 RRHVELALCHLAQNED----NARDFISRGGAKELVQISIESSREDIRNLAKKTMKS 590 (600)
Q Consensus 539 ~~~Aa~aL~nLa~~~~----~~~~lv~~G~l~~Lv~ll~~~~~~~ir~~A~~~L~~ 590 (600)
+..|+++|+||+.... .+..++..|+++.|+.++.+++.+.++..|..+|.+
T Consensus 324 ~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~n 379 (644)
T 2z6h_A 324 TEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRN 379 (644)
T ss_dssp HHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHH
Confidence 9999999999986432 345577899999999999987666777777666544
No 31
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.88 E-value=6e-22 Score=197.41 Aligned_cols=193 Identities=20% Similarity=0.221 Sum_probs=167.0
Q ss_pred CchHHHhcccCCCCc--cccchHHHH---hh-cCchhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhC-CcchH
Q 007520 309 DYISKGSSRFGAPMS--LQKSNPSRE---LS-GQRATIAKICDEVGLPKILQLLTSEDPDVQIHAVKVVANLAA-EDINQ 381 (600)
Q Consensus 309 g~i~~Lv~~L~s~~~--~~r~~a~~~---L~-~~~~~~~~i~e~GgV~~Lv~LL~s~~~~vr~~Aa~aL~nLa~-~~~~~ 381 (600)
-.+|.+|.++.++.+ ..+..++.. ++ .++.++..+++.||||+|+.+|.+++++++..|+++|+||+. +++++
T Consensus 8 ~~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk 87 (233)
T 3tt9_A 8 MTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNK 87 (233)
T ss_dssp CCHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred ccHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHH
Confidence 468999999999877 555555544 45 467788999999999999999999999999999999999998 68899
Q ss_pred HHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcCCccHHHHHHhCchhhhHhhhc----c-----------CCCHH
Q 007520 382 EKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMNEMNQGLIMSRGGGQLLAKTAS----K-----------TDDPQ 446 (600)
Q Consensus 382 ~~iv~~G~I~~Lv~lL~~~~~~~v~~~Al~aL~NLa~~~~~r~~I~~~G~I~~Lv~lL~----~-----------~~~~~ 446 (600)
..|+++|+||+|+.+|.++++..+++.|+++||||+..+.++..|++. ++|+|+.++. . ..++.
T Consensus 88 ~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~~-~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~ 166 (233)
T 3tt9_A 88 LEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMITE-ALLTLTENIIIPFSGWPEGDYPKANGLLDFD 166 (233)
T ss_dssp HHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHHH-HHHHHCCCCCHHHHCCCGGGCCCCCTTCCHH
T ss_pred HHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHhc-cHHHHHHHHhccccCCcccccccccccchHH
Confidence 999999999999999986678899999999999999999999999975 7999998763 1 13679
Q ss_pred HHHHHHHHHHHHhC-CchhHHHHHHc-ChHHHHHHHHcC------CCHHHHHHHHHHHHHhhcC
Q 007520 447 TLRMVAGALANLCG-NEKLHTMLEED-GAIKALLAMVRS------GNIDVIAQVARGLANFAKC 502 (600)
Q Consensus 447 v~~~Aa~aL~nLa~-~~e~r~~i~~~-G~i~~Lv~lL~s------~~~~v~~~A~~aL~nLa~~ 502 (600)
++..|+++|+||+. ++++|..|++. |+|+.|+.+++. .+...+++|+.+|+||+..
T Consensus 167 v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~ 230 (233)
T 3tt9_A 167 IFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ 230 (233)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence 99999999999986 67999999986 678999999963 3557899999999999854
No 32
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.87 E-value=1.2e-20 Score=182.59 Aligned_cols=194 Identities=19% Similarity=0.256 Sum_probs=172.2
Q ss_pred HcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcC-CccHHHHHHhCchhhhHhhhccCCCHHHHHHHHHHHHHHh-CCch
Q 007520 386 EEGGLDALLLLLRTSQNTTILRVASGAIANLAMN-EMNQGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLC-GNEK 463 (600)
Q Consensus 386 ~~G~I~~Lv~lL~~~~~~~v~~~Al~aL~NLa~~-~~~r~~I~~~G~I~~Lv~lL~~~~~~~v~~~Aa~aL~nLa-~~~e 463 (600)
..|+.++|+.+|. ++++.++..|+++|.+|+.. ++++..+++.|+++.|+.+|.. +++.++..|+++|+||+ .++.
T Consensus 10 ~~~~~~~l~~LL~-s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~ 87 (210)
T 4db6_A 10 HGSELPQMVQQLN-SPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSS-PNEQILQEALWALSNIASGGNE 87 (210)
T ss_dssp ---CHHHHHHHTT-CSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTC-SCHHHHHHHHHHHHHHTTSCHH
T ss_pred ccchhHHHHHHhc-CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcC-CCHHHHHHHHHHHHHHhcCCcH
Confidence 5578899999998 67899999999999999954 8889999999999999999964 68899999999999999 5778
Q ss_pred hHHHHHHcChHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchhhhhcchhhHHHHHhCCcHHHHHHhhcCCCHHHHHHHH
Q 007520 464 LHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSKTNSASTRRHVE 543 (600)
Q Consensus 464 ~r~~i~~~G~i~~Lv~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~q~~~~~r~~l~e~g~l~~Lv~Ll~s~~~~v~~~Aa 543 (600)
.+..+.+.|+++.|+.+|.++++.++..|+++|+||+.++ +..+..+.+.|+++.|+.++.++++.++..|+
T Consensus 88 ~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~--------~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~ 159 (210)
T 4db6_A 88 QIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG--------NEQIQAVIDAGALPALVQLLSSPNEQILQEAL 159 (210)
T ss_dssp HHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC--------HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCC--------HHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHH
Confidence 9999999999999999999999999999999999999765 45666788999999999999999999999999
Q ss_pred HHHHHhhcC-chhHHHHHHcccHHHHHHhhhcCChHHHHHHHHHHHhc
Q 007520 544 LALCHLAQN-EDNARDFISRGGAKELVQISIESSREDIRNLAKKTMKS 590 (600)
Q Consensus 544 ~aL~nLa~~-~~~~~~lv~~G~l~~Lv~ll~~~~~~~ir~~A~~~L~~ 590 (600)
++|++|+.+ +..+..+++.|+++.|+.++.+++ +.++..|..+|..
T Consensus 160 ~aL~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~-~~v~~~a~~aL~~ 206 (210)
T 4db6_A 160 WALSNIASGGNEQKQAVKEAGALEKLEQLQSHEN-EKIQKEAQEALEK 206 (210)
T ss_dssp HHHHHHHTSCHHHHHHHHHTTHHHHHHHGGGCSC-HHHHHHHHHHHHH
T ss_pred HHHHHHHcCCcHHHHHHHHCCCHHHHHHHHhCCC-HHHHHHHHHHHHH
Confidence 999999886 678888889999999999998755 6788888877754
No 33
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.87 E-value=3e-21 Score=224.40 Aligned_cols=273 Identities=19% Similarity=0.195 Sum_probs=228.1
Q ss_pred cccCchHHHhcccCCCCccccchHHHH---hhcCchhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhC-CcchH
Q 007520 306 YTKDYISKGSSRFGAPMSLQKSNPSRE---LSGQRATIAKICDEVGLPKILQLLTSEDPDVQIHAVKVVANLAA-EDINQ 381 (600)
Q Consensus 306 ~~~g~i~~Lv~~L~s~~~~~r~~a~~~---L~~~~~~~~~i~e~GgV~~Lv~LL~s~~~~vr~~Aa~aL~nLa~-~~~~~ 381 (600)
+..|+++.|+.++.++....+..++.. ++...... ....++++.|+.+|.+.++.++..|+++|++|+. ++.++
T Consensus 357 ~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~--~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~ 434 (780)
T 2z6g_A 357 VEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ--EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNK 434 (780)
T ss_dssp HHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTC--SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHH
T ss_pred HHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhh--hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHH
Confidence 578999999999998876666666655 33322211 1123568999999999999999999999999998 45778
Q ss_pred HHHHHcCCHHHHHHHHccCC-CHHHHHHHHHHHHHhhcC-Cc---cHHHHHHhCchhhhHhhhccCCCHHHHHHHHHHHH
Q 007520 382 EKIVEEGGLDALLLLLRTSQ-NTTILRVASGAIANLAMN-EM---NQGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALA 456 (600)
Q Consensus 382 ~~iv~~G~I~~Lv~lL~~~~-~~~v~~~Al~aL~NLa~~-~~---~r~~I~~~G~I~~Lv~lL~~~~~~~v~~~Aa~aL~ 456 (600)
..+++.|+++.|+.+|.... ...++..|+++|+||+.. ++ .+..+...|+++.|+.+|....++.++..|+++|+
T Consensus 435 ~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~ 514 (780)
T 2z6g_A 435 MMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIR 514 (780)
T ss_dssp HHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHH
Confidence 89999999999999997533 358999999999999975 33 36688889999999999976555699999999999
Q ss_pred HHhCCchhHHHHHHcChHHHHHHHHcCCC----------------------HHHHHHHHHHHHHhhcCCchhhhhcchhh
Q 007520 457 NLCGNEKLHTMLEEDGAIKALLAMVRSGN----------------------IDVIAQVARGLANFAKCESRAIVQGQRKG 514 (600)
Q Consensus 457 nLa~~~e~r~~i~~~G~i~~Lv~lL~s~~----------------------~~v~~~A~~aL~nLa~~~~~~~~q~~~~~ 514 (600)
||+.++..+..+.+.|+++.|+.+|.+++ ..++..++++|++|+.+ +.+
T Consensus 515 nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~~---------~~~ 585 (780)
T 2z6g_A 515 NLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARD---------IHN 585 (780)
T ss_dssp HHHSSHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTC------CCSTTCCHHHHHHHHHHHHHHHTTS---------HHH
T ss_pred HHhcCHHHHHHHHHCCCHHHHHHHHHhcchhHHHHHhhccccchhhcccChHHHHHHHHHHHHHHhcC---------hhh
Confidence 99999888988999999999999996533 34677888999999854 467
Q ss_pred HHHHHhCCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCchhHHHHHHcccHHHHHHhhhcCChHHHHHHHHHHHhc
Q 007520 515 RSHLMEDSALEWLIANSKTNSASTRRHVELALCHLAQNEDNARDFISRGGAKELVQISIESSREDIRNLAKKTMKS 590 (600)
Q Consensus 515 r~~l~e~g~l~~Lv~Ll~s~~~~v~~~Aa~aL~nLa~~~~~~~~lv~~G~l~~Lv~ll~~~~~~~ir~~A~~~L~~ 590 (600)
+..+.+.|+++.|+.++.++++.++..|+.+|++|+.+++.+..+.+.|+++.|+.++.+.+ +.++..|..+|..
T Consensus 586 ~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~i~~~g~i~~L~~Ll~~~~-~~Vr~~A~~aL~~ 660 (780)
T 2z6g_A 586 RIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRN-EGVATYAAAVLFR 660 (780)
T ss_dssp HHHHHHTCCHHHHHHGGGCSCHHHHHHHHHHHHHHHTSHHHHHHHHHTTCHHHHHHGGGCSC-HHHHHHHHHHHHH
T ss_pred HHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCHHHHHHHHHCCCHHHHHHHHcCCC-HHHHHHHHHHHHH
Confidence 78899999999999999999999999999999999999889999999999999999998765 6688887766654
No 34
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.87 E-value=1.6e-20 Score=193.96 Aligned_cols=221 Identities=16% Similarity=0.131 Sum_probs=184.0
Q ss_pred HHHHHHHHHHHHHhhCCcchHHHHHHcCCHHHHHH-HHccCCCHHHHHHHHHHHHHhhcC-CccHHHHHHhCchhhhHhh
Q 007520 361 PDVQIHAVKVVANLAAEDINQEKIVEEGGLDALLL-LLRTSQNTTILRVASGAIANLAMN-EMNQGLIMSRGGGQLLAKT 438 (600)
Q Consensus 361 ~~vr~~Aa~aL~nLa~~~~~~~~iv~~G~I~~Lv~-lL~~~~~~~v~~~Al~aL~NLa~~-~~~r~~I~~~G~I~~Lv~l 438 (600)
.+-+..|+..|.+++.+.++...|+..|++|+|+. +|. ++++.++..|+++|.|++.+ +.++..+++.|++|+|+.+
T Consensus 54 ~e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~-s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~L 132 (296)
T 1xqr_A 54 QQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLE-AGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRL 132 (296)
T ss_dssp HHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTT-CSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHc-CCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHH
Confidence 35678899999999998889999999999999999 998 77899999999999999987 7789999999999999999
Q ss_pred hccCCCHHHHHHHHHHHHHHhC-CchhHHHHHHcChHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchhhhhcchhhHHH
Q 007520 439 ASKTDDPQTLRMVAGALANLCG-NEKLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFAKCESRAIVQGQRKGRSH 517 (600)
Q Consensus 439 L~~~~~~~v~~~Aa~aL~nLa~-~~e~r~~i~~~G~i~~Lv~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~q~~~~~r~~ 517 (600)
|..++++.+++.|+|+|+||+. ++.....|.+.|+++.|+.+|.++++.++..|+|+|++|+.++ +..+..
T Consensus 133 L~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~--------~~~~~~ 204 (296)
T 1xqr_A 133 LDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGH--------PEHKGT 204 (296)
T ss_dssp HHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC--------GGGHHH
T ss_pred HccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCC--------hHHHHH
Confidence 9755578999999999999985 5677778999999999999999999999999999999999764 457778
Q ss_pred HHhCCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCchhHHHHHHcc--cHHHH----HHhhhcCC-hHHHHHHHHHHHhc
Q 007520 518 LMEDSALEWLIANSKTNSASTRRHVELALCHLAQNEDNARDFISRG--GAKEL----VQISIESS-REDIRNLAKKTMKS 590 (600)
Q Consensus 518 l~e~g~l~~Lv~Ll~s~~~~v~~~Aa~aL~nLa~~~~~~~~lv~~G--~l~~L----v~ll~~~~-~~~ir~~A~~~L~~ 590 (600)
+++.|+++.|+.++.++++.++..|+.+|.+|+............+ .+..+ .+-++... ..++.+.|..++..
T Consensus 205 vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~l~~lL~~~~~~lq~~e~~~e~~~~~~~il~~ 284 (296)
T 1xqr_A 205 LCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQQHEEYQEELEFCEKLLQT 284 (296)
T ss_dssp HHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHCGGGCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhCChhHHHHHhccHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999988744333333222 12222 22233222 35678888877753
No 35
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.86 E-value=6.8e-21 Score=221.39 Aligned_cols=273 Identities=19% Similarity=0.230 Sum_probs=235.8
Q ss_pred cCchHHHhcccCCC-CccccchHHHH---hhcCchhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhC-CcchHH
Q 007520 308 KDYISKGSSRFGAP-MSLQKSNPSRE---LSGQRATIAKICDEVGLPKILQLLTSEDPDVQIHAVKVVANLAA-EDINQE 382 (600)
Q Consensus 308 ~g~i~~Lv~~L~s~-~~~~r~~a~~~---L~~~~~~~~~i~e~GgV~~Lv~LL~s~~~~vr~~Aa~aL~nLa~-~~~~~~ 382 (600)
.|+++.|+..++++ ....+..|+.. ++.+..++..++..|+++.|+.+|.++++.++..|+++|.||+. .+..+.
T Consensus 191 ~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~ 270 (780)
T 2z6g_A 191 PQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKM 270 (780)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHH
T ss_pred cChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHH
Confidence 47899999999865 56666666655 66677788889999999999999999999999999999999998 466788
Q ss_pred HHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcC-CccHHHHHHhCchhhhHhhhccCCCHHHHHHHHHHHHHHhCC
Q 007520 383 KIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMN-EMNQGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLCGN 461 (600)
Q Consensus 383 ~iv~~G~I~~Lv~lL~~~~~~~v~~~Al~aL~NLa~~-~~~r~~I~~~G~I~~Lv~lL~~~~~~~v~~~Aa~aL~nLa~~ 461 (600)
.+++.|+++.|+.+|. +++..++..++.+|++|+.. ++++..+++.|+++.|+.+|...........++.+|++|+.+
T Consensus 271 ~v~~~g~v~~Lv~lL~-~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~ 349 (780)
T 2z6g_A 271 AVRLAGGLQKMVALLN-KTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC 349 (780)
T ss_dssp HHHHTTHHHHHHHGGG-CCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS
T ss_pred HHHHcCCHHHHHHHHh-cCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcC
Confidence 8889999999999998 56888999999999999975 889999999999999999997765556777889999999999
Q ss_pred chhHHHHHHcChHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchhhhhcchhhHHHHHhCCcHHHHHHhhcCCCHHHHHH
Q 007520 462 EKLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSKTNSASTRRH 541 (600)
Q Consensus 462 ~e~r~~i~~~G~i~~Lv~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~q~~~~~r~~l~e~g~l~~Lv~Ll~s~~~~v~~~ 541 (600)
+.++..+++.|+++.|+.++.+.++.++..|+++|.+|+...+.. ....++++.|+.++.+.++.++..
T Consensus 350 ~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~-----------~~~~~~i~~Lv~lL~~~d~~vr~~ 418 (780)
T 2z6g_A 350 SSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ-----------EGMEGLLGTLVQLLGSDDINVVTC 418 (780)
T ss_dssp TTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTC-----------SCCHHHHHHHHHHTTCSCHHHHHH
T ss_pred hHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhh-----------hhhhhHHHHHHHHHcCCCHHHHHH
Confidence 999999999999999999999999999999999999999664221 122478999999999999999999
Q ss_pred HHHHHHHhhcCc-hhHHHHHHcccHHHHHHhhhcC-ChHHHHHHHHHHHhcCc
Q 007520 542 VELALCHLAQNE-DNARDFISRGGAKELVQISIES-SREDIRNLAKKTMKSNP 592 (600)
Q Consensus 542 Aa~aL~nLa~~~-~~~~~lv~~G~l~~Lv~ll~~~-~~~~ir~~A~~~L~~~p 592 (600)
|+++|++|+.++ +++..+++.|+++.|+.++..+ +.+.++..|..+|.+..
T Consensus 419 A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~ 471 (780)
T 2z6g_A 419 AAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLT 471 (780)
T ss_dssp HHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHH
Confidence 999999998764 6788888999999999999874 34578888888876554
No 36
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.84 E-value=1.4e-20 Score=213.60 Aligned_cols=265 Identities=14% Similarity=0.062 Sum_probs=210.9
Q ss_pred cccCchHHHhcccCCCCccccchHHHH---hhcCchhHHHHHhcCCHHHHHHhhCCCCHH---HHHHHHHHHHHhhCCcc
Q 007520 306 YTKDYISKGSSRFGAPMSLQKSNPSRE---LSGQRATIAKICDEVGLPKILQLLTSEDPD---VQIHAVKVVANLAAEDI 379 (600)
Q Consensus 306 ~~~g~i~~Lv~~L~s~~~~~r~~a~~~---L~~~~~~~~~i~e~GgV~~Lv~LL~s~~~~---vr~~Aa~aL~nLa~~~~ 379 (600)
++.|++|.|+.+++++++..+..++++ ++.++.++..++++||+++|+.+|.++... ++..|+.+|++|+....
T Consensus 454 ~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~n 533 (778)
T 3opb_A 454 LRTELISFLKREMHNLSPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTN 533 (778)
T ss_dssp TTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTSGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSC
T ss_pred HHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCC
Confidence 789999999999999999888888876 677999999999999999999999877654 89999999999886333
Q ss_pred hHHHHHH---cCCHHHHHHHHccCCCH-------------HHHHHHHHHHHHhhcCCc-----cHHHHHH-hCchhhhHh
Q 007520 380 NQEKIVE---EGGLDALLLLLRTSQNT-------------TILRVASGAIANLAMNEM-----NQGLIMS-RGGGQLLAK 437 (600)
Q Consensus 380 ~~~~iv~---~G~I~~Lv~lL~~~~~~-------------~v~~~Al~aL~NLa~~~~-----~r~~I~~-~G~I~~Lv~ 437 (600)
....|.. .|+|++|+.+|..++.. --+..|+.||+|||..++ .|..|+. .|+|+.|..
T Consensus 534 p~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~ 613 (778)
T 3opb_A 534 PGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIEN 613 (778)
T ss_dssp HHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHH
T ss_pred HHHHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHH
Confidence 2222211 38999999999832211 125679999999999873 4888888 499999999
Q ss_pred hhccCCCHHHHHHHHHHHHHHhCCchhH-HHHHH------cChHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchhhhhc
Q 007520 438 TASKTDDPQTLRMVAGALANLCGNEKLH-TMLEE------DGAIKALLAMVRSGNIDVIAQVARGLANFAKCESRAIVQG 510 (600)
Q Consensus 438 lL~~~~~~~v~~~Aa~aL~nLa~~~e~r-~~i~~------~G~i~~Lv~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~q~ 510 (600)
+|.+ +++.++++|+++|+||+.+++.. ..+.. .++++.|+.++++++..++..|+|+|+|++..+
T Consensus 614 LL~s-~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~------- 685 (778)
T 3opb_A 614 LMLD-ENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTI------- 685 (778)
T ss_dssp GGGC-SSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHC-------
T ss_pred HHhC-CCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCC-------
Confidence 9964 78899999999999999988864 34432 235899999999999999999999999997544
Q ss_pred chhhHHHHHhC-CcHHHHHHhhcC--CCHHHHHHHHHHHHHhhc----Cc--hhHHHHH-HcccHHHHHHhhhcCChHH
Q 007520 511 QRKGRSHLMED-SALEWLIANSKT--NSASTRRHVELALCHLAQ----NE--DNARDFI-SRGGAKELVQISIESSRED 579 (600)
Q Consensus 511 ~~~~r~~l~e~-g~l~~Lv~Ll~s--~~~~v~~~Aa~aL~nLa~----~~--~~~~~lv-~~G~l~~Lv~ll~~~~~~~ 579 (600)
+.....+++. ++++.++.++.+ +++.++++++.+++||+. +. +....+. .......|..++++++.+.
T Consensus 686 -~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~~~~~~~~~~~~~~~~~~~~l~~~l~~~lk~~~~~~ 763 (778)
T 3opb_A 686 -PLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFEVIPDNGTNEVYPLLQENQKLKDALNMSLKRGDSGP 763 (778)
T ss_dssp -HHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTCCSTTTTSCCHHHHSCHHHHHHHHHHHSSSSSCS
T ss_pred -hHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhhccCCChHHHHHHhcChHHHHHHHHHHhCCCchH
Confidence 3344556665 899999999998 899999999999999985 21 2334445 4567888888888776543
No 37
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.84 E-value=1.1e-19 Score=187.77 Aligned_cols=178 Identities=20% Similarity=0.207 Sum_probs=158.9
Q ss_pred ccchHHHH---hhcCchhHHHHHhcCCHHHHHH-hhCCCCHHHHHHHHHHHHHhhC-CcchHHHHHHcCCHHHHHHHHcc
Q 007520 325 QKSNPSRE---LSGQRATIAKICDEVGLPKILQ-LLTSEDPDVQIHAVKVVANLAA-EDINQEKIVEEGGLDALLLLLRT 399 (600)
Q Consensus 325 ~r~~a~~~---L~~~~~~~~~i~e~GgV~~Lv~-LL~s~~~~vr~~Aa~aL~nLa~-~~~~~~~iv~~G~I~~Lv~lL~~ 399 (600)
.+..|+.. +..+.++...|+..||+++|+. +|.++++.++..|+++|++++. ++..+..+++.|++|+|+.+|.+
T Consensus 56 ~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~ 135 (296)
T 1xqr_A 56 EREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDR 135 (296)
T ss_dssp HHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHcc
Confidence 44555554 4456677788999999999999 9999999999999999999998 56788999999999999999996
Q ss_pred CCCHHHHHHHHHHHHHhhcC-CccHHHHHHhCchhhhHhhhccCCCHHHHHHHHHHHHHHh-CCchhHHHHHHcChHHHH
Q 007520 400 SQNTTILRVASGAIANLAMN-EMNQGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLC-GNEKLHTMLEEDGAIKAL 477 (600)
Q Consensus 400 ~~~~~v~~~Al~aL~NLa~~-~~~r~~I~~~G~I~~Lv~lL~~~~~~~v~~~Aa~aL~nLa-~~~e~r~~i~~~G~i~~L 477 (600)
+++..++..|++||+||+.+ +.....+++.||+++|+.+|.+ +++.++..|+|+|+||+ ++++.+..+++.|+++.|
T Consensus 136 ~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~-~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~L 214 (296)
T 1xqr_A 136 DACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQ-QVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQL 214 (296)
T ss_dssp CSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHS-SCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcC-CCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHH
Confidence 66889999999999999986 6677889999999999999964 78999999999999997 457889999999999999
Q ss_pred HHHHcCCCHHHHHHHHHHHHHhhcCC
Q 007520 478 LAMVRSGNIDVIAQVARGLANFAKCE 503 (600)
Q Consensus 478 v~lL~s~~~~v~~~A~~aL~nLa~~~ 503 (600)
+.+|.++++.++..|+++|+||+...
T Consensus 215 v~LL~~~d~~v~~~al~aL~~l~~~~ 240 (296)
T 1xqr_A 215 VALVRTEHSPFHEHVLGALCSLVTDF 240 (296)
T ss_dssp HHHHTSCCSTHHHHHHHHHHHHHTTC
T ss_pred HHHHcCCChhHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999764
No 38
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.82 E-value=1.6e-19 Score=205.09 Aligned_cols=242 Identities=11% Similarity=0.129 Sum_probs=193.7
Q ss_pred hHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCcchHHHHHHcCCHHHHHHHHccCCCH--HHHHHHHHHHHHh
Q 007520 339 TIAKICDEVGLPKILQLLTSEDPDVQIHAVKVVANLAAEDINQEKIVEEGGLDALLLLLRTSQNT--TILRVASGAIANL 416 (600)
Q Consensus 339 ~~~~i~e~GgV~~Lv~LL~s~~~~vr~~Aa~aL~nLa~~~~~~~~iv~~G~I~~Lv~lL~~~~~~--~v~~~Al~aL~NL 416 (600)
++..+++.|++|+|+.++.++++.++..|+++|.||+.++.+|..+++.||+++|+.+|.+..+. .++..|+.||++|
T Consensus 449 ~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArL 528 (778)
T 3opb_A 449 NEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRM 528 (778)
T ss_dssp HHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTSGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHH
Confidence 45667889999999999999999999999999999999999999999999999999999855433 2789999999999
Q ss_pred hcCCccHHHHHH---hCchhhhHhhhccCCC------------H-HHHHHHHHHHHHHhCCc-----hhHHHHHHc-ChH
Q 007520 417 AMNEMNQGLIMS---RGGGQLLAKTASKTDD------------P-QTLRMVAGALANLCGNE-----KLHTMLEED-GAI 474 (600)
Q Consensus 417 a~~~~~r~~I~~---~G~I~~Lv~lL~~~~~------------~-~v~~~Aa~aL~nLa~~~-----e~r~~i~~~-G~i 474 (600)
+...+....+-. .|+|++|+.+|..++. + .-...|+.+|.|||..+ +.+..|+.. |++
T Consensus 529 lis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~ 608 (778)
T 3opb_A 529 LIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYW 608 (778)
T ss_dssp HHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHH
T ss_pred HhcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHH
Confidence 977554443321 4899999999962111 1 12568999999999775 468888885 999
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhhcCCchhhhhcchhhHHHHHh------CCcHHHHHHhhcCCCHHHHHHHHHHHHH
Q 007520 475 KALLAMVRSGNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLME------DSALEWLIANSKTNSASTRRHVELALCH 548 (600)
Q Consensus 475 ~~Lv~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~q~~~~~r~~l~e------~g~l~~Lv~Ll~s~~~~v~~~Aa~aL~n 548 (600)
+.|..+|.+++..++..|+++++||+.+ +..++ ..+.. .+.++.|+.++.+++..++..|+|+|.|
T Consensus 609 ~~L~~LL~s~n~~VrrAA~elI~NL~~~-~e~i~-------~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAn 680 (778)
T 3opb_A 609 STIENLMLDENVPLQRSTLELISNMMSH-PLTIA-------AKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFAN 680 (778)
T ss_dssp HHHHHGGGCSSHHHHHHHHHHHHHHHTS-GGGTG-------GGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHhCC-cHHHH-------HHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999964 32211 11221 2258899999999999999999999999
Q ss_pred hh-cCchhHHHHHHc-ccHHHHHHhhhcC-ChHHHHHHHHHHH
Q 007520 549 LA-QNEDNARDFISR-GGAKELVQISIES-SREDIRNLAKKTM 588 (600)
Q Consensus 549 La-~~~~~~~~lv~~-G~l~~Lv~ll~~~-~~~~ir~~A~~~L 588 (600)
++ .++..+..+++. +|+..|+.++... +.+.++.-+..++
T Consensus 681 Lts~~~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l 723 (778)
T 3opb_A 681 IATTIPLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLF 723 (778)
T ss_dssp HHHHCHHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred hcCCChHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 96 577788999986 8999999999983 3455655555443
No 39
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.43 E-value=5.7e-12 Score=140.12 Aligned_cols=321 Identities=13% Similarity=0.067 Sum_probs=226.3
Q ss_pred hhhchHHHHHHHHhhhHHHHhhhhHHHHHHHHhccCCCCCCccccccccccCchHHHhcccCCCCc--cccchHHHH---
Q 007520 258 KETMSDELQAARQRLLVEEKQRKAIEYELVKLKKTAPEHDDDFEDKKPYTKDYISKGSSRFGAPMS--LQKSNPSRE--- 332 (600)
Q Consensus 258 ~~~~~~el~~~~~~l~~e~~~~~~le~~~~~l~~~l~~l~~~~~~~~~~~~g~i~~Lv~~L~s~~~--~~r~~a~~~--- 332 (600)
.+++.+.+.++-.|+.. ....++.+.++..+++.. .+. ...++.+|++.|+..|+.... .....++..
T Consensus 16 ~qs~~etI~~L~~Rl~~-~tl~eDRR~Av~~Lk~~s----k~y--~~~Vg~~~l~~li~~L~~d~~D~e~v~~~LetL~~ 88 (651)
T 3grl_A 16 QHTEAETIQKLCDRVAS-STLLDDRRNAVRALKSLS----KKY--RLEVGIQAMEHLIHVLQTDRSDSEIIGYALDTLYN 88 (651)
T ss_dssp --CHHHHHHHHHHHHHH-CCSHHHHHHHHHHHHHTT----TTT--TTHHHHHTHHHHHHHHHSCTTCHHHHHHHHHHHHH
T ss_pred CCChhhHHHHHHHHHhh-ccchhHHHHHHHHHHHHH----HHh--HHHhhhhhHHHHHHHHhcccccHHHHHHHHHHHHH
Confidence 34667888888888754 445566667777777542 111 111778899999999987632 222223332
Q ss_pred -hhcCch-----------------hHHHHH-hcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhC-Ccc-hHHHHHHc-CCH
Q 007520 333 -LSGQRA-----------------TIAKIC-DEVGLPKILQLLTSEDPDVQIHAVKVVANLAA-EDI-NQEKIVEE-GGL 390 (600)
Q Consensus 333 -L~~~~~-----------------~~~~i~-e~GgV~~Lv~LL~s~~~~vr~~Aa~aL~nLa~-~~~-~~~~iv~~-G~I 390 (600)
++.+.. ....+. ..++|+.|+.+|.+.+-.+|..++.+|..|+. .+. ++..|..+ +||
T Consensus 89 l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi 168 (651)
T 3grl_A 89 IISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGV 168 (651)
T ss_dssp HHCCC--------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHH
T ss_pred HhCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccH
Confidence 222111 111222 45679999999999999999999999999987 554 68888854 999
Q ss_pred HHHHHHHccCCCHHHHHHHHHHHHHhhcC-CccHHHHHHhCchhhhHhhhccCC---CHHHHHHHHHHHHHHh-CCchhH
Q 007520 391 DALLLLLRTSQNTTILRVASGAIANLAMN-EMNQGLIMSRGGGQLLAKTASKTD---DPQTLRMVAGALANLC-GNEKLH 465 (600)
Q Consensus 391 ~~Lv~lL~~~~~~~v~~~Al~aL~NLa~~-~~~r~~I~~~G~I~~Lv~lL~~~~---~~~v~~~Aa~aL~nLa-~~~e~r 465 (600)
+.|+.+|. ++.+.++..++.+|.+|+.+ ++.++.+.-.|+++.|+.++...+ ..-+...++.+|.||. .++.++
T Consensus 169 ~~Lv~lL~-d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ 247 (651)
T 3grl_A 169 SRLMDLLA-DSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQ 247 (651)
T ss_dssp HHHHGGGG-CSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHh-CchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHH
Confidence 99999998 55788999999999999988 556666666899999999996422 2367788999999997 557799
Q ss_pred HHHHHcChHHHHHHHHcCCC------HHHHHH---HHHHHHHhhcCCchhhhhcchhhHHHHHhCCcHHHHHHhhcCC--
Q 007520 466 TMLEEDGAIKALLAMVRSGN------IDVIAQ---VARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSKTN-- 534 (600)
Q Consensus 466 ~~i~~~G~i~~Lv~lL~s~~------~~v~~~---A~~aL~nLa~~~~~~~~q~~~~~r~~l~e~g~l~~Lv~Ll~s~-- 534 (600)
..|.+.|+++.|..++..++ +....+ +..+++-|+..+.. .++.+.++..+.+.|+++.|++++.+.
T Consensus 248 ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~--~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~ 325 (651)
T 3grl_A 248 NFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNP--PGATSSCQKAMFQCGLLQQLCTILMATGV 325 (651)
T ss_dssp HHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSC--HHHHHHHHHHHHHTTHHHHHHHHHTCSSC
T ss_pred HHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCC--CCCCHHHHHHHHHCCCHHHHHHHHccCCC
Confidence 99999999999999986432 223344 66677777654321 112356888999999999999987765
Q ss_pred CHHHHHHHHHHHHHhhcCc-hhHHHHHHcc---------cHHHHHHhhhcCChHHHHHHHHHHH
Q 007520 535 SASTRRHVELALCHLAQNE-DNARDFISRG---------GAKELVQISIESSREDIRNLAKKTM 588 (600)
Q Consensus 535 ~~~v~~~Aa~aL~nLa~~~-~~~~~lv~~G---------~l~~Lv~ll~~~~~~~ir~~A~~~L 588 (600)
+..++..|..++..+..+. .+...+.... .+..|+.++.+.....+|-+|...+
T Consensus 326 p~~i~~~Al~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~~~lR~Aa~~cl 389 (651)
T 3grl_A 326 PADILTETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCF 389 (651)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTSCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhcccccHHHHHHHHHHH
Confidence 6889999999999997755 4555555422 3333445555556667887766443
No 40
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.38 E-value=9.7e-12 Score=138.27 Aligned_cols=280 Identities=14% Similarity=0.130 Sum_probs=206.2
Q ss_pred cccCchHHHhcccCCCC-ccccchHHHHhhc-CchhHHHHHhcCCHHHHHHhhCC--CCHHHHHHHHHHHHHhhC-Ccc-
Q 007520 306 YTKDYISKGSSRFGAPM-SLQKSNPSRELSG-QRATIAKICDEVGLPKILQLLTS--EDPDVQIHAVKVVANLAA-EDI- 379 (600)
Q Consensus 306 ~~~g~i~~Lv~~L~s~~-~~~r~~a~~~L~~-~~~~~~~i~e~GgV~~Lv~LL~s--~~~~vr~~Aa~aL~nLa~-~~~- 379 (600)
-....|+.|+..+.+.+ ..-|..|+..|-+ .+.. ..-+..+|++.|+..|.. .|.++...+..+|.++.. ++.
T Consensus 18 s~~etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~y-~~~Vg~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~ 96 (651)
T 3grl_A 18 TEAETIQKLCDRVASSTLLDDRRNAVRALKSLSKKY-RLEVGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEE 96 (651)
T ss_dssp CHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTTTT-TTHHHHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC---
T ss_pred ChhhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHh-HHHhhhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcc
Confidence 34557888888887664 4556666666322 2222 334557889999999964 588888899999998765 221
Q ss_pred ----------------hHHHHH-HcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcC-Cc-cHHHHHH-hCchhhhHhhh
Q 007520 380 ----------------NQEKIV-EEGGLDALLLLLRTSQNTTILRVASGAIANLAMN-EM-NQGLIMS-RGGGQLLAKTA 439 (600)
Q Consensus 380 ----------------~~~~iv-~~G~I~~Lv~lL~~~~~~~v~~~Al~aL~NLa~~-~~-~r~~I~~-~G~I~~Lv~lL 439 (600)
+...++ +.++|+.|+.+|. ..+-.++..++.+|..|+.+ +. ++..|.. .+||+.|+.+|
T Consensus 97 ~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~-~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL 175 (651)
T 3grl_A 97 EVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLE-EFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLL 175 (651)
T ss_dssp -----------CHHHHHHHHHHHSTHHHHHHHHHTT-CCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGG
T ss_pred cccccccccchHHHHHHHHHHHcCCccHHHHHHHhc-CccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHH
Confidence 122333 5678999999998 77889999999999999987 44 8999996 69999999999
Q ss_pred ccCCCHHHHHHHHHHHHHHhCC-chhHHHHHHcChHHHHHHHHcCC----CHHHHHHHHHHHHHhhcCCchhhhhcchhh
Q 007520 440 SKTDDPQTLRMVAGALANLCGN-EKLHTMLEEDGAIKALLAMVRSG----NIDVIAQVARGLANFAKCESRAIVQGQRKG 514 (600)
Q Consensus 440 ~~~~~~~v~~~Aa~aL~nLa~~-~e~r~~i~~~G~i~~Lv~lL~s~----~~~v~~~A~~aL~nLa~~~~~~~~q~~~~~ 514 (600)
.+ ....++..++.+|.+|+.+ ++++..++-.|+++.|+.++... ...+...|+.+|.||..++ ..+
T Consensus 176 ~d-~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N--------~sN 246 (651)
T 3grl_A 176 AD-SREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNN--------NSN 246 (651)
T ss_dssp GC-SSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTC--------HHH
T ss_pred hC-chHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcC--------HHH
Confidence 64 5567788889999999854 67777777789999999999643 3467889999999999886 457
Q ss_pred HHHHHhCCcHHHHHHhhcCCCH------HHHHH---HHHHHHHhhcC-------chhHHHHHHcccHHHHHHhhhcCC-h
Q 007520 515 RSHLMEDSALEWLIANSKTNSA------STRRH---VELALCHLAQN-------EDNARDFISRGGAKELVQISIESS-R 577 (600)
Q Consensus 515 r~~l~e~g~l~~Lv~Ll~s~~~------~v~~~---Aa~aL~nLa~~-------~~~~~~lv~~G~l~~Lv~ll~~~~-~ 577 (600)
+..|.+.|+++.|..++..+.+ ....+ +..+++-|+.. ..+...+.+.|++..|++++.++. +
T Consensus 247 Q~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p 326 (651)
T 3grl_A 247 QNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVP 326 (651)
T ss_dssp HHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCC
T ss_pred HHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCC
Confidence 8899999999999999875432 12233 45555555443 136788889999999999998764 3
Q ss_pred HHHHHHHHHH----HhcCccccc
Q 007520 578 EDIRNLAKKT----MKSNPRLQA 596 (600)
Q Consensus 578 ~~ir~~A~~~----L~~~p~~~~ 596 (600)
..++..|..+ ...+|.-+.
T Consensus 327 ~~i~~~Al~tla~~irgN~~~Q~ 349 (651)
T 3grl_A 327 ADILTETINTVSEVIRGCQVNQD 349 (651)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHH
Confidence 4566666543 445554443
No 41
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.30 E-value=4.4e-11 Score=120.79 Aligned_cols=200 Identities=11% Similarity=0.023 Sum_probs=143.5
Q ss_pred cccCchHHHhcccCCCCccccchHHHHhhcCchhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCcchHHHHH
Q 007520 306 YTKDYISKGSSRFGAPMSLQKSNPSRELSGQRATIAKICDEVGLPKILQLLTSEDPDVQIHAVKVVANLAAEDINQEKIV 385 (600)
Q Consensus 306 ~~~g~i~~Lv~~L~s~~~~~r~~a~~~L~~~~~~~~~i~e~GgV~~Lv~LL~s~~~~vr~~Aa~aL~nLa~~~~~~~~iv 385 (600)
...+.++.|+..+.++.+..+..|+..|.... ..+.++.|+.+|.++++.+|..|+.+|+.+...+.....
T Consensus 20 ~~~~~i~~L~~~L~~~~~~vr~~A~~~L~~~~-------~~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~~~~-- 90 (280)
T 1oyz_A 20 CKKLNDDELFRLLDDHNSLKRISSARVLQLRG-------GQDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCEDN-- 90 (280)
T ss_dssp HHTSCHHHHHHHTTCSSHHHHHHHHHHHHHHC-------CHHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHHH--
T ss_pred HHHhhHHHHHHHHHcCCHHHHHHHHHHHHccC-------CchHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccchH--
Confidence 34678899999999888888877777643211 123578899999999999999999999988753322111
Q ss_pred HcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcC-CccHHHHHHhCchhhhHhhhccCCCHHHHHHHHHHHHHHhCCchh
Q 007520 386 EEGGLDALLLLLRTSQNTTILRVASGAIANLAMN-EMNQGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLCGNEKL 464 (600)
Q Consensus 386 ~~G~I~~Lv~lL~~~~~~~v~~~Al~aL~NLa~~-~~~r~~I~~~G~I~~Lv~lL~~~~~~~v~~~Aa~aL~nLa~~~e~ 464 (600)
.++.|...+..++++.++..++++|.+++.. +.. ...+++.|+.++. ++++.++..|+.+|+++..
T Consensus 91 ---l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~~-----~~~~~~~L~~~l~-d~~~~vR~~a~~aL~~~~~---- 157 (280)
T 1oyz_A 91 ---VFNILNNMALNDKSACVRATAIESTAQRCKKNPIY-----SPKIVEQSQITAF-DKSTNVRRATAFAISVIND---- 157 (280)
T ss_dssp ---HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGG-----HHHHHHHHHHHTT-CSCHHHHHHHHHHHHTC------
T ss_pred ---HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCcc-----cHHHHHHHHHHhh-CCCHHHHHHHHHHHHhcCC----
Confidence 2333333333477888999999999998743 211 2245778888884 4788899999999887643
Q ss_pred HHHHHHcChHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchhhhhcchhhHHHHHhCCcHHHHHHhhcCCCHHHHHHHHH
Q 007520 465 HTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSKTNSASTRRHVEL 544 (600)
Q Consensus 465 r~~i~~~G~i~~Lv~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~q~~~~~r~~l~e~g~l~~Lv~Ll~s~~~~v~~~Aa~ 544 (600)
.++++.|+.++.++++.|+..|+++|+.+...+ ..+++.|+.++.++++.++..|++
T Consensus 158 ------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~-----------------~~~~~~L~~~l~d~~~~vR~~A~~ 214 (280)
T 1oyz_A 158 ------KATIPLLINLLKDPNGDVRNWAAFAININKYDN-----------------SDIRDCFVEMLQDKNEEVRIEAII 214 (280)
T ss_dssp -------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCC-----------------HHHHHHHHHHTTCSCHHHHHHHHH
T ss_pred ------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCc-----------------HHHHHHHHHHhcCCCHHHHHHHHH
Confidence 357888999999899999999999998885332 135677777888788888888888
Q ss_pred HHHHhh
Q 007520 545 ALCHLA 550 (600)
Q Consensus 545 aL~nLa 550 (600)
+|..+.
T Consensus 215 aL~~~~ 220 (280)
T 1oyz_A 215 GLSYRK 220 (280)
T ss_dssp HHHHTT
T ss_pred HHHHhC
Confidence 887765
No 42
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.29 E-value=3.1e-10 Score=109.52 Aligned_cols=186 Identities=16% Similarity=0.188 Sum_probs=144.5
Q ss_pred cCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCcchHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcCCccHHH
Q 007520 346 EVGLPKILQLLTSEDPDVQIHAVKVVANLAAEDINQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMNEMNQGL 425 (600)
Q Consensus 346 ~GgV~~Lv~LL~s~~~~vr~~Aa~aL~nLa~~~~~~~~iv~~G~I~~Lv~lL~~~~~~~v~~~Al~aL~NLa~~~~~r~~ 425 (600)
.+.++.|+.+|.++++.+|..|+.+|+.+.. .++++.|+.+|. ++++.++..|+.+|..+..
T Consensus 18 ~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~----------~~~~~~L~~~l~-~~~~~vr~~a~~aL~~~~~------- 79 (211)
T 3ltm_A 18 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD----------ERAVEPLIKALK-DEDAWVRRAAADALGQIGD------- 79 (211)
T ss_dssp GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTT-CSCHHHHHHHHHHHHHHCC-------
T ss_pred HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC----------ccHHHHHHHHHc-CCCHHHHHHHHHHHHhhCC-------
Confidence 3458888888988899999999988887643 246888888888 6688889889988888753
Q ss_pred HHHhCchhhhHhhhccCCCHHHHHHHHHHHHHHhCCchhHHHHHHcChHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCch
Q 007520 426 IMSRGGGQLLAKTASKTDDPQTLRMVAGALANLCGNEKLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFAKCESR 505 (600)
Q Consensus 426 I~~~G~I~~Lv~lL~~~~~~~v~~~Aa~aL~nLa~~~e~r~~i~~~G~i~~Lv~lL~s~~~~v~~~A~~aL~nLa~~~~~ 505 (600)
.++++.|+.+|. ++++.++..|+.+|..+.. .+.++.|+.++.++++.|+..|+.+|+.+..
T Consensus 80 ---~~~~~~L~~~l~-~~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~---- 141 (211)
T 3ltm_A 80 ---ERAVEPLIKALK-DEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD---- 141 (211)
T ss_dssp ---GGGHHHHHHHTT-CSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----
T ss_pred ---HHHHHHHHHHHc-CCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC----
Confidence 357788888884 4778888888888887753 3577888888888899999999999988842
Q ss_pred hhhhcchhhHHHHHhCCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCchhHHHHHHcccHHHHHHhhhcCChHHHHHHHH
Q 007520 506 AIVQGQRKGRSHLMEDSALEWLIANSKTNSASTRRHVELALCHLAQNEDNARDFISRGGAKELVQISIESSREDIRNLAK 585 (600)
Q Consensus 506 ~~~q~~~~~r~~l~e~g~l~~Lv~Ll~s~~~~v~~~Aa~aL~nLa~~~~~~~~lv~~G~l~~Lv~ll~~~~~~~ir~~A~ 585 (600)
...++.|+.++.++++.++..|+.+|..+.. ..+++.|..++.+++ +.+|..|.
T Consensus 142 ---------------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~-~~vr~~A~ 195 (211)
T 3ltm_A 142 ---------------ERAVEPLIKALKDEDGWVRQSAADALGEIGG----------ERVRAAMEKLAETGT-GFARKVAV 195 (211)
T ss_dssp ---------------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS----------HHHHHHHHHHHHHCC-HHHHHHHH
T ss_pred ---------------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------hhHHHHHHHHHhCCC-HHHHHHHH
Confidence 1377888888888889999999999988842 346777888887655 56888888
Q ss_pred HHHhcCcc
Q 007520 586 KTMKSNPR 593 (600)
Q Consensus 586 ~~L~~~p~ 593 (600)
.+|.....
T Consensus 196 ~aL~~~~~ 203 (211)
T 3ltm_A 196 NYLETHKS 203 (211)
T ss_dssp HHHHC---
T ss_pred HHHHhcCC
Confidence 88866543
No 43
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.26 E-value=3e-10 Score=108.81 Aligned_cols=187 Identities=17% Similarity=0.194 Sum_probs=153.6
Q ss_pred cCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCcchHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcCCccHHH
Q 007520 346 EVGLPKILQLLTSEDPDVQIHAVKVVANLAAEDINQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMNEMNQGL 425 (600)
Q Consensus 346 ~GgV~~Lv~LL~s~~~~vr~~Aa~aL~nLa~~~~~~~~iv~~G~I~~Lv~lL~~~~~~~v~~~Al~aL~NLa~~~~~r~~ 425 (600)
.++.+.++.+|.++++.+|..|+.+|+.+.. .+.++.|+.+|. ++++.++..|+.+|..+..
T Consensus 13 ~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~----------~~~~~~L~~~l~-~~~~~vr~~a~~~L~~~~~------- 74 (201)
T 3ltj_A 13 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD----------ERAVEPLIKALK-DEDAWVRRAAADALGQIGD------- 74 (201)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHCC----------GGGHHHHHHHTT-CSSHHHHHHHHHHHHHHCC-------
T ss_pred CcchHHHHHHhcCCCHHHHHHHHHHHHhcCC----------hhHHHHHHHHHc-CCCHHHHHHHHHHHHhhCC-------
Confidence 3458889999999999999999999998653 246899999997 7788999999999988753
Q ss_pred HHHhCchhhhHhhhccCCCHHHHHHHHHHHHHHhCCchhHHHHHHcChHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCch
Q 007520 426 IMSRGGGQLLAKTASKTDDPQTLRMVAGALANLCGNEKLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFAKCESR 505 (600)
Q Consensus 426 I~~~G~I~~Lv~lL~~~~~~~v~~~Aa~aL~nLa~~~e~r~~i~~~G~i~~Lv~lL~s~~~~v~~~A~~aL~nLa~~~~~ 505 (600)
.++++.|+.+|. ++++.++..|+++|+++.. .++++.|+.++.++++.|+..|+++|+.+..
T Consensus 75 ---~~~~~~L~~~l~-d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~---- 136 (201)
T 3ltj_A 75 ---ERAVEPLIKALK-DEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD---- 136 (201)
T ss_dssp ---GGGHHHHHHHTT-CSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC----
T ss_pred ---HHHHHHHHHHHc-CCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC----
Confidence 257888999885 4788999999999998753 3578889999999999999999999999852
Q ss_pred hhhhcchhhHHHHHhCCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCchhHHHHHHcccHHHHHHhhhcCChHHHHHHHH
Q 007520 506 AIVQGQRKGRSHLMEDSALEWLIANSKTNSASTRRHVELALCHLAQNEDNARDFISRGGAKELVQISIESSREDIRNLAK 585 (600)
Q Consensus 506 ~~~q~~~~~r~~l~e~g~l~~Lv~Ll~s~~~~v~~~Aa~aL~nLa~~~~~~~~lv~~G~l~~Lv~ll~~~~~~~ir~~A~ 585 (600)
.+.++.|+.++.++++.++..|+.+|..+.. ..+++.|..++.+++ +.+|..|.
T Consensus 137 ---------------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~----------~~~~~~L~~~l~d~~-~~vr~~A~ 190 (201)
T 3ltj_A 137 ---------------ERAVEPLIKALKDEDGWVRQSAADALGEIGG----------ERVRAAMEKLAETGT-GFARKVAV 190 (201)
T ss_dssp ---------------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS----------HHHHHHHHHHHHHCC-HHHHHHHH
T ss_pred ---------------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------hhHHHHHHHHHhCCC-HHHHHHHH
Confidence 2478999999999999999999999999832 236788888887755 67999999
Q ss_pred HHHhcCccc
Q 007520 586 KTMKSNPRL 594 (600)
Q Consensus 586 ~~L~~~p~~ 594 (600)
.+|.....+
T Consensus 191 ~aL~~l~~~ 199 (201)
T 3ltj_A 191 NYLETHKSL 199 (201)
T ss_dssp HHHHHCC--
T ss_pred HHHHHHHhh
Confidence 888766543
No 44
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.23 E-value=2.1e-10 Score=110.78 Aligned_cols=191 Identities=14% Similarity=0.117 Sum_probs=155.0
Q ss_pred cccCchHHHhcccCCCCccccchHHHHhhcCchhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCcchHHHHH
Q 007520 306 YTKDYISKGSSRFGAPMSLQKSNPSRELSGQRATIAKICDEVGLPKILQLLTSEDPDVQIHAVKVVANLAAEDINQEKIV 385 (600)
Q Consensus 306 ~~~g~i~~Lv~~L~s~~~~~r~~a~~~L~~~~~~~~~i~e~GgV~~Lv~LL~s~~~~vr~~Aa~aL~nLa~~~~~~~~iv 385 (600)
.+.+.++.|+..++++....+..++..+... ...++++.|+.+|.++++.+|..|+.+|+.+..
T Consensus 16 ~~~~~~~~L~~~L~~~~~~vR~~A~~~L~~~-------~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~--------- 79 (211)
T 3ltm_A 16 ADPEKVEMYIKNLQDDSYYVRRAAAYALGKI-------GDERAVEPLIKALKDEDAWVRRAAADALGQIGD--------- 79 (211)
T ss_dssp CCGGGHHHHHHHTTCSSHHHHHHHHHHHHHH-------CCGGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC---------
T ss_pred cCHhHHHHHHHHHcCCCHHHHHHHHHHHHHh-------CCccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC---------
Confidence 3567899999999988888888777774321 113678999999999999999999999998753
Q ss_pred HcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcCCccHHHHHHhCchhhhHhhhccCCCHHHHHHHHHHHHHHhCCchhH
Q 007520 386 EEGGLDALLLLLRTSQNTTILRVASGAIANLAMNEMNQGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLCGNEKLH 465 (600)
Q Consensus 386 ~~G~I~~Lv~lL~~~~~~~v~~~Al~aL~NLa~~~~~r~~I~~~G~I~~Lv~lL~~~~~~~v~~~Aa~aL~nLa~~~e~r 465 (600)
.++++.|+.+|. ++++.++..|+.+|..+.. .++++.|+.++. ++++.++..|+.+|+++..
T Consensus 80 -~~~~~~L~~~l~-~~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~-d~~~~vr~~a~~aL~~~~~----- 141 (211)
T 3ltm_A 80 -ERAVEPLIKALK-DEDGWVRQSAAVALGQIGD----------ERAVEPLIKALK-DEDWFVRIAAAFALGEIGD----- 141 (211)
T ss_dssp -GGGHHHHHHHTT-CSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTT-CSSHHHHHHHHHHHHHHCC-----
T ss_pred -HHHHHHHHHHHc-CCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHh-CCCHHHHHHHHHHHHHcCC-----
Confidence 346899999997 7789999999999998853 357889999884 5888999999999998743
Q ss_pred HHHHHcChHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchhhhhcchhhHHHHHhCCcHHHHHHhhcCCCHHHHHHHHHH
Q 007520 466 TMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSKTNSASTRRHVELA 545 (600)
Q Consensus 466 ~~i~~~G~i~~Lv~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~q~~~~~r~~l~e~g~l~~Lv~Ll~s~~~~v~~~Aa~a 545 (600)
...++.|+.++.++++.|+..|+.+|..+.. ..+++.|..++.++++.|+..|..+
T Consensus 142 -----~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-------------------~~~~~~L~~~l~d~~~~vr~~A~~a 197 (211)
T 3ltm_A 142 -----ERAVEPLIKALKDEDGWVRQSAADALGEIGG-------------------ERVRAAMEKLAETGTGFARKVAVNY 197 (211)
T ss_dssp -----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-------------------HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-------------------hhHHHHHHHHHhCCCHHHHHHHHHH
Confidence 3578899999999999999999999999852 1378889999999999999999999
Q ss_pred HHHhhcCch
Q 007520 546 LCHLAQNED 554 (600)
Q Consensus 546 L~nLa~~~~ 554 (600)
|.++..+..
T Consensus 198 L~~~~~~~~ 206 (211)
T 3ltm_A 198 LETHKSFNH 206 (211)
T ss_dssp HHC------
T ss_pred HHhcCCCCC
Confidence 999976543
No 45
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.22 E-value=8.5e-10 Score=111.25 Aligned_cols=201 Identities=11% Similarity=0.111 Sum_probs=151.1
Q ss_pred HHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCcchHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcCCc
Q 007520 342 KICDEVGLPKILQLLTSEDPDVQIHAVKVVANLAAEDINQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMNEM 421 (600)
Q Consensus 342 ~i~e~GgV~~Lv~LL~s~~~~vr~~Aa~aL~nLa~~~~~~~~iv~~G~I~~Lv~lL~~~~~~~v~~~Al~aL~NLa~~~~ 421 (600)
.+...++++.|+..|.++++.+|..|+.+|+++.. .+.++.|+.+|. ++++.++..|+++|..+...+.
T Consensus 18 ~~~~~~~i~~L~~~L~~~~~~vr~~A~~~L~~~~~----------~~~~~~L~~~l~-d~~~~vR~~A~~aL~~l~~~~~ 86 (280)
T 1oyz_A 18 NQCKKLNDDELFRLLDDHNSLKRISSARVLQLRGG----------QDAVRLAIEFCS-DKNYIRRDIGAFILGQIKICKK 86 (280)
T ss_dssp HHHHTSCHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------HHHHHHHHHHHT-CSSHHHHHHHHHHHHHSCCCTT
T ss_pred HHHHHhhHHHHHHHHHcCCHHHHHHHHHHHHccCC----------chHHHHHHHHHc-CCCHHHHHHHHHHHHHhccccc
Confidence 34567789999999999999999999999998762 235888999998 7788999999999999975533
Q ss_pred cHHHHHHhCchhhhHhhhccCCCHHHHHHHHHHHHHHhC-CchhHHHHHHcChHHHHHHHHcCCCHHHHHHHHHHHHHhh
Q 007520 422 NQGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLCG-NEKLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFA 500 (600)
Q Consensus 422 ~r~~I~~~G~I~~Lv~lL~~~~~~~v~~~Aa~aL~nLa~-~~e~r~~i~~~G~i~~Lv~lL~s~~~~v~~~A~~aL~nLa 500 (600)
.... .++.|...+...+++.++..++++|.+++. ++.. ....++.|+.++.++++.|+..|+++|+++.
T Consensus 87 ~~~~-----l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~~-----~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~ 156 (280)
T 1oyz_A 87 CEDN-----VFNILNNMALNDKSACVRATAIESTAQRCKKNPIY-----SPKIVEQSQITAFDKSTNVRRATAFAISVIN 156 (280)
T ss_dssp THHH-----HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGG-----HHHHHHHHHHHTTCSCHHHHHHHHHHHHTC-
T ss_pred cchH-----HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCcc-----cHHHHHHHHHHhhCCCHHHHHHHHHHHHhcC
Confidence 2111 334444333345788999999999999863 3222 2246788999999999999999999999875
Q ss_pred cCCchhhhhcchhhHHHHHhCCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCchhHHHHHHcccHHHHHHhhhcCChHHH
Q 007520 501 KCESRAIVQGQRKGRSHLMEDSALEWLIANSKTNSASTRRHVELALCHLAQNEDNARDFISRGGAKELVQISIESSREDI 580 (600)
Q Consensus 501 ~~~~~~~~q~~~~~r~~l~e~g~l~~Lv~Ll~s~~~~v~~~Aa~aL~nLa~~~~~~~~lv~~G~l~~Lv~ll~~~~~~~i 580 (600)
. .++++.|+.++.++++.++..|+++|..+..... .+++.|+.++.+++ +.+
T Consensus 157 ~-------------------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~--------~~~~~L~~~l~d~~-~~v 208 (280)
T 1oyz_A 157 D-------------------KATIPLLINLLKDPNGDVRNWAAFAININKYDNS--------DIRDCFVEMLQDKN-EEV 208 (280)
T ss_dssp ---------------------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCH--------HHHHHHHHHTTCSC-HHH
T ss_pred C-------------------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCcH--------HHHHHHHHHhcCCC-HHH
Confidence 2 2489999999999999999999999999853322 35566677766544 556
Q ss_pred HHHHHHHHhcC
Q 007520 581 RNLAKKTMKSN 591 (600)
Q Consensus 581 r~~A~~~L~~~ 591 (600)
|..|..+|...
T Consensus 209 R~~A~~aL~~~ 219 (280)
T 1oyz_A 209 RIEAIIGLSYR 219 (280)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHh
Confidence 66666666443
No 46
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.20 E-value=3e-10 Score=108.86 Aligned_cols=187 Identities=14% Similarity=0.125 Sum_probs=156.7
Q ss_pred cccCchHHHhcccCCCCccccchHHHHhhcCchhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCcchHHHHH
Q 007520 306 YTKDYISKGSSRFGAPMSLQKSNPSRELSGQRATIAKICDEVGLPKILQLLTSEDPDVQIHAVKVVANLAAEDINQEKIV 385 (600)
Q Consensus 306 ~~~g~i~~Lv~~L~s~~~~~r~~a~~~L~~~~~~~~~i~e~GgV~~Lv~LL~s~~~~vr~~Aa~aL~nLa~~~~~~~~iv 385 (600)
+..+..+.++..++++....+..++..+.... ..++++.|+.+|.++++.+|..|+.+|+.+..
T Consensus 11 ~~~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~-------~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~--------- 74 (201)
T 3ltj_A 11 TDPEKVEMYIKNLQDDSYYVRRAAAYALGKIG-------DERAVEPLIKALKDEDAWVRRAAADALGQIGD--------- 74 (201)
T ss_dssp CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHC-------CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC---------
T ss_pred cCCcchHHHHHHhcCCCHHHHHHHHHHHHhcC-------ChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC---------
Confidence 66788999999999999999988887743211 13568999999999999999999999998753
Q ss_pred HcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcCCccHHHHHHhCchhhhHhhhccCCCHHHHHHHHHHHHHHhCCchhH
Q 007520 386 EEGGLDALLLLLRTSQNTTILRVASGAIANLAMNEMNQGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLCGNEKLH 465 (600)
Q Consensus 386 ~~G~I~~Lv~lL~~~~~~~v~~~Al~aL~NLa~~~~~r~~I~~~G~I~~Lv~lL~~~~~~~v~~~Aa~aL~nLa~~~e~r 465 (600)
.++++.|+.+|. ++++.++..|+++|.++.. ..+++.|+.+|. ++++.++..|+++|+++..
T Consensus 75 -~~~~~~L~~~l~-d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~-d~~~~vr~~a~~aL~~~~~----- 136 (201)
T 3ltj_A 75 -ERAVEPLIKALK-DEDGWVRQSAAVALGQIGD----------ERAVEPLIKALK-DEDWFVRIAAAFALGEIGD----- 136 (201)
T ss_dssp -GGGHHHHHHHTT-CSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTT-CSSHHHHHHHHHHHHHHTC-----
T ss_pred -HHHHHHHHHHHc-CCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHc-CCCHHHHHHHHHHHHHhCC-----
Confidence 246899999998 6789999999999998753 347888999885 5788999999999998753
Q ss_pred HHHHHcChHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchhhhhcchhhHHHHHhCCcHHHHHHhhcCCCHHHHHHHHHH
Q 007520 466 TMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSKTNSASTRRHVELA 545 (600)
Q Consensus 466 ~~i~~~G~i~~Lv~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~q~~~~~r~~l~e~g~l~~Lv~Ll~s~~~~v~~~Aa~a 545 (600)
.+.++.|+.++.++++.|+..|+.+|+.+.. ..+++.|..++.++++.++..|..+
T Consensus 137 -----~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~-------------------~~~~~~L~~~l~d~~~~vr~~A~~a 192 (201)
T 3ltj_A 137 -----ERAVEPLIKALKDEDGWVRQSAADALGEIGG-------------------ERVRAAMEKLAETGTGFARKVAVNY 192 (201)
T ss_dssp -----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-------------------HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-------------------hhHHHHHHHHHhCCCHHHHHHHHHH
Confidence 4688899999999999999999999999842 1378889999999999999999999
Q ss_pred HHHhh
Q 007520 546 LCHLA 550 (600)
Q Consensus 546 L~nLa 550 (600)
|..+.
T Consensus 193 L~~l~ 197 (201)
T 3ltj_A 193 LETHK 197 (201)
T ss_dssp HHHCC
T ss_pred HHHHH
Confidence 98874
No 47
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=99.14 E-value=1.5e-10 Score=132.55 Aligned_cols=195 Identities=12% Similarity=0.057 Sum_probs=152.6
Q ss_pred CCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCcchHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcC--CccHH
Q 007520 347 VGLPKILQLLTSEDPDVQIHAVKVVANLAAEDINQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMN--EMNQG 424 (600)
Q Consensus 347 GgV~~Lv~LL~s~~~~vr~~Aa~aL~nLa~~~~~~~~iv~~G~I~~Lv~lL~~~~~~~v~~~Al~aL~NLa~~--~~~r~ 424 (600)
..+.|++..|.++++..|..|+.+|.||+.++.++..+...|+|.+++.-+-.+++.+++..|+++|+||+.. ++.+.
T Consensus 34 ~~i~Pll~~L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~ 113 (684)
T 4gmo_A 34 DKILPVLKDLKSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCV 113 (684)
T ss_dssp HTTHHHHHHHSSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred hhHHHHHHHcCCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHH
Confidence 4577888899999999999999999999999899999999999998876544488999999999999999975 68899
Q ss_pred HHHHhCchhhhHhhhccC-------------CC-------HHHHHHHHHHHHHHh-CCchhHHHHHHcChHHHHHHHHc-
Q 007520 425 LIMSRGGGQLLAKTASKT-------------DD-------PQTLRMVAGALANLC-GNEKLHTMLEEDGAIKALLAMVR- 482 (600)
Q Consensus 425 ~I~~~G~I~~Lv~lL~~~-------------~~-------~~v~~~Aa~aL~nLa-~~~e~r~~i~~~G~i~~Lv~lL~- 482 (600)
.++..|++++|..+|... .. ..+...++.+|++|| ++++....+...|+++.|+.+|.
T Consensus 114 ~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~~ 193 (684)
T 4gmo_A 114 HLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRLIS 193 (684)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHHh
Confidence 999999999999887431 00 123456778999998 45677778888999999999984
Q ss_pred --CCCHHHHHHHHHHHHHhhcCCchhhhhcchhhHHHHHhCCcH---HHHHHhhcCCCHHHHHHHHHHHHHhh
Q 007520 483 --SGNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLMEDSAL---EWLIANSKTNSASTRRHVELALCHLA 550 (600)
Q Consensus 483 --s~~~~v~~~A~~aL~nLa~~~~~~~~q~~~~~r~~l~e~g~l---~~Lv~Ll~s~~~~v~~~Aa~aL~nLa 550 (600)
.....++..|+.+|.+|+.+++. .-..+.+.|.. ..++.+.. .+...+..++++|.|+.
T Consensus 194 ~~~~~~~v~~~a~~~L~~ls~dn~~--------~~~~i~~~~~~~~~~~ll~~~~-~~~~~~~la~giL~Ni~ 257 (684)
T 4gmo_A 194 ADIAPQDIYEEAISCLTTLSEDNLK--------VGQAITDDQETHVYDVLLKLAT-GTDPRAVMACGVLHNVF 257 (684)
T ss_dssp HCCSCHHHHHHHHHHHHHHHTTCHH--------HHHHHHTCCSSCHHHHHHHHHH-SSCTTHHHHHHHHHHHH
T ss_pred cCCCcHHHHHHHHHHHHHHhccCHH--------HHHHHHhcchHHHHHHHHHHhc-CCcHHHHHHHHHHHhHh
Confidence 24568999999999999977633 33446665543 33333333 34456778899999984
No 48
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=98.86 E-value=1.1e-08 Score=117.19 Aligned_cols=166 Identities=12% Similarity=0.091 Sum_probs=132.1
Q ss_pred CHHHHHHHHccCCCHHHHHHHHHHHHHhhcCCccHHHHHHhCchhhhHh-hhccCCCHHHHHHHHHHHHHHh--CCchhH
Q 007520 389 GLDALLLLLRTSQNTTILRVASGAIANLAMNEMNQGLIMSRGGGQLLAK-TASKTDDPQTLRMVAGALANLC--GNEKLH 465 (600)
Q Consensus 389 ~I~~Lv~lL~~~~~~~v~~~Al~aL~NLa~~~~~r~~I~~~G~I~~Lv~-lL~~~~~~~v~~~Aa~aL~nLa--~~~e~r 465 (600)
.|.|++..|. ++++..+..|+++|+||+.++.++..+...|+|.+++. +| ..++..++..|+++|+||| ...+.+
T Consensus 35 ~i~Pll~~L~-S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL-~D~~~~Vr~~A~gaLrnL~~~~g~d~~ 112 (684)
T 4gmo_A 35 KILPVLKDLK-SPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETL-TDNNIDSRAAGWEILKVLAQEEEADFC 112 (684)
T ss_dssp TTHHHHHHHS-SSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTT-TCSCHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred hHHHHHHHcC-CCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHc-CCCCHHHHHHHHHHHHHHHhhcCchHH
Confidence 5677888888 67788899999999999999999999999999988654 56 4578899999999999998 457899
Q ss_pred HHHHHcChHHHHHHHHcCCC---------------------HHHHHHHHHHHHHhhcCCchhhhhcchhhHHHHHhCCcH
Q 007520 466 TMLEEDGAIKALLAMVRSGN---------------------IDVIAQVARGLANFAKCESRAIVQGQRKGRSHLMEDSAL 524 (600)
Q Consensus 466 ~~i~~~G~i~~Lv~lL~s~~---------------------~~v~~~A~~aL~nLa~~~~~~~~q~~~~~r~~l~e~g~l 524 (600)
..+...|++++|+.++.... ..+...++.+|++||..+ ......+...|++
T Consensus 113 ~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s--------~~~~~~v~~~~~l 184 (684)
T 4gmo_A 113 VHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALAR--------DEIHEAVATKQTI 184 (684)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHC--------HHHHHHHHTCHHH
T ss_pred HHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCC--------HHHHHHHHhcccH
Confidence 99999999999999884211 234567889999998664 3344557788999
Q ss_pred HHHHHhhcC---CCHHHHHHHHHHHHHhhcCc-hhHHHHHHccc
Q 007520 525 EWLIANSKT---NSASTRRHVELALCHLAQNE-DNARDFISRGG 564 (600)
Q Consensus 525 ~~Lv~Ll~s---~~~~v~~~Aa~aL~nLa~~~-~~~~~lv~~G~ 564 (600)
+.|+..+.+ ....++..|+.+|+.++.+. +....+...|.
T Consensus 185 ~~l~~~L~~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~ 228 (684)
T 4gmo_A 185 LRLLFRLISADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQE 228 (684)
T ss_dssp HHHHHHHHHHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCS
T ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcch
Confidence 999997643 34789999999999998865 45566666553
No 49
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=98.73 E-value=3.8e-08 Score=114.81 Aligned_cols=268 Identities=13% Similarity=0.048 Sum_probs=175.5
Q ss_pred ccCchHHHhcccCCCCccccchHHHHhhcC-chhHHHHHh--cCCHHHHHHhhCCCCHHHHHHHHHHHHHhhC-CcchHH
Q 007520 307 TKDYISKGSSRFGAPMSLQKSNPSRELSGQ-RATIAKICD--EVGLPKILQLLTSEDPDVQIHAVKVVANLAA-EDINQE 382 (600)
Q Consensus 307 ~~g~i~~Lv~~L~s~~~~~r~~a~~~L~~~-~~~~~~i~e--~GgV~~Lv~LL~s~~~~vr~~Aa~aL~nLa~-~~~~~~ 382 (600)
-.+.++.++..++++....|..|+.++... ......+.. .+.++.++.++.++++.+|..|+.+|..++. .+..-.
T Consensus 172 ~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~ 251 (852)
T 4fdd_A 172 LNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLL 251 (852)
T ss_dssp HHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHG
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHH
Confidence 345678888888888888888777763321 100011111 1346777888889999999999999999987 332211
Q ss_pred HHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcCCccHHHHHH--hCchhhhHhhhc----------cC--------
Q 007520 383 KIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMNEMNQGLIMS--RGGGQLLAKTAS----------KT-------- 442 (600)
Q Consensus 383 ~iv~~G~I~~Lv~lL~~~~~~~v~~~Al~aL~NLa~~~~~r~~I~~--~G~I~~Lv~lL~----------~~-------- 442 (600)
..+. +.++.++.++. +.++.++..|+.++.+++..+..+..+.. ...+|.++..+. ..
T Consensus 252 ~~l~-~l~~~l~~~~~-~~~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~d 329 (852)
T 4fdd_A 252 PHMH-NIVEYMLQRTQ-DQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGD 329 (852)
T ss_dssp GGHH-HHHHHHHHHHT-CSSHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC---------
T ss_pred HHHH-HHHHHHHHHcc-CCcHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccc
Confidence 1112 35777778777 67888999999999999977544442211 234566666652 11
Q ss_pred ---CCHHHHHHHHHHHHHHhCCchhHHHHHHcChHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchhhhhcchhhHHHHH
Q 007520 443 ---DDPQTLRMVAGALANLCGNEKLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLM 519 (600)
Q Consensus 443 ---~~~~v~~~Aa~aL~nLa~~~e~r~~i~~~G~i~~Lv~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~q~~~~~r~~l~ 519 (600)
.+..++..|+.+|..|+.... ..+. ...++.+..++.+.+..++..|+++|++++...+... .. .
T Consensus 330 d~~~~~~vr~~a~~~L~~la~~~~--~~~~-~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~-------~~--~ 397 (852)
T 4fdd_A 330 DTISDWNLRKCSAAALDVLANVYR--DELL-PHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGM-------IP--Y 397 (852)
T ss_dssp ---CCCCHHHHHHHHHHHHHHHHG--GGGH-HHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHH-------GG--G
T ss_pred cccccchHHHHHHHHHHHHHHhcc--HHHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHH-------HH--H
Confidence 111357778888888874311 0111 2466777888888999999999999999996542211 10 1
Q ss_pred hCCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCchh-HHHHHHcccHHHHHHhhhcCChHHHHHHHHHHHh
Q 007520 520 EDSALEWLIANSKTNSASTRRHVELALCHLAQNEDN-ARDFISRGGAKELVQISIESSREDIRNLAKKTMK 589 (600)
Q Consensus 520 e~g~l~~Lv~Ll~s~~~~v~~~Aa~aL~nLa~~~~~-~~~lv~~G~l~~Lv~ll~~~~~~~ir~~A~~~L~ 589 (600)
-.+.++.|+..+.++++.|+..|+++|.+++..-.. .....-.+.++.|+..+.+.+ +.++..|..+|.
T Consensus 398 l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~-~~vr~~a~~aL~ 467 (852)
T 4fdd_A 398 LPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSN-KRVQEAACSAFA 467 (852)
T ss_dssp HHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSS-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCC-HHHHHHHHHHHH
Confidence 246789999999999999999999999999753211 001112357788888887654 567777665553
No 50
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=98.69 E-value=2.9e-07 Score=101.39 Aligned_cols=261 Identities=13% Similarity=0.060 Sum_probs=176.6
Q ss_pred cCchHHHhcccCCCCccccchHHHHhhcCch-hHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCcchHHHHHH
Q 007520 308 KDYISKGSSRFGAPMSLQKSNPSRELSGQRA-TIAKICDEVGLPKILQLLTSEDPDVQIHAVKVVANLAAEDINQEKIVE 386 (600)
Q Consensus 308 ~g~i~~Lv~~L~s~~~~~r~~a~~~L~~~~~-~~~~i~e~GgV~~Lv~LL~s~~~~vr~~Aa~aL~nLa~~~~~~~~iv~ 386 (600)
...+|.+...+.+.....|..++..+..-.. ..........+|.++.++.++++.+|..++.+|..+...-+.. .+ .
T Consensus 323 ~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~-~~-~ 400 (588)
T 1b3u_A 323 SQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIR-QL-S 400 (588)
T ss_dssp HTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHHHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHH-HH-H
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCHH-HH-H
Confidence 3456677777777777677666554221100 0011122335678888999999999999999998877521111 11 2
Q ss_pred cCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcC-CccHHHHHHhCchhhhHhhhccCCCHHHHHHHHHHHHHHhCCchhH
Q 007520 387 EGGLDALLLLLRTSQNTTILRVASGAIANLAMN-EMNQGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLCGNEKLH 465 (600)
Q Consensus 387 ~G~I~~Lv~lL~~~~~~~v~~~Al~aL~NLa~~-~~~r~~I~~~G~I~~Lv~lL~~~~~~~v~~~Aa~aL~nLa~~~e~r 465 (600)
...+|.+..++. +++..++..++.+|..++.. +.. +.....+|.+...|.+ +++.++..|+.+|..++..-..
T Consensus 401 ~~~lp~l~~~~~-d~~~~vr~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d-~~~~Vr~~a~~~l~~l~~~~~~- 474 (588)
T 1b3u_A 401 QSLLPAIVELAE-DAKWRVRLAIIEYMPLLAGQLGVE---FFDEKLNSLCMAWLVD-HVYAIREAATSNLKKLVEKFGK- 474 (588)
T ss_dssp HHHHHHHHHHHT-CSSHHHHHHHHHHHHHHHHHHCGG---GCCHHHHHHHHHGGGC-SSHHHHHHHHHHHHHHHHHHCH-
T ss_pred HHHHHHHHHHhc-CCCchHHHHHHHHHHHHHHHcCHH---HHHHHHHHHHHHHhcC-CcHHHHHHHHHHHHHHHHHhCc-
Confidence 235777888776 67888999999999998754 110 1122356777888854 6778999999999988743111
Q ss_pred HHHHHcChHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchhhhhcchhhHHHHHhCCcHHHHHHhhcCCCHHHHHHHHHH
Q 007520 466 TMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSKTNSASTRRHVELA 545 (600)
Q Consensus 466 ~~i~~~G~i~~Lv~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~q~~~~~r~~l~e~g~l~~Lv~Ll~s~~~~v~~~Aa~a 545 (600)
...-...++.|+.++.+++..++..+++++..++..- +.. ..-...+|.|+.++.++++.||..++++
T Consensus 475 -~~~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~----------~~~-~~~~~~~~~l~~~l~d~~~~Vr~~a~~~ 542 (588)
T 1b3u_A 475 -EWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVC----------GQD-ITTKHMLPTVLRMAGDPVANVRFNVAKS 542 (588)
T ss_dssp -HHHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHH----------HHH-HHHHHTHHHHHHGGGCSCHHHHHHHHHH
T ss_pred -hhHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhc----------CHH-HHHHHHHHHHHhhCCCCCchHHHHHHHH
Confidence 1223456778888788889999999999999998531 111 2234688999999999999999999999
Q ss_pred HHHhhcCchhHHHHHHcccHHHHHHhhhcCChHHHHHHHHHHHhcC
Q 007520 546 LCHLAQNEDNARDFISRGGAKELVQISIESSREDIRNLAKKTMKSN 591 (600)
Q Consensus 546 L~nLa~~~~~~~~lv~~G~l~~Lv~ll~~~~~~~ir~~A~~~L~~~ 591 (600)
|..++..-+. .......++.|..++.++ ..++|..|..++...
T Consensus 543 l~~l~~~~~~--~~~~~~~~p~l~~l~~d~-d~~vr~~a~~al~~l 585 (588)
T 1b3u_A 543 LQKIGPILDN--STLQSEVKPILEKLTQDQ-DVDVKYFAQEALTVL 585 (588)
T ss_dssp HHHHGGGSCH--HHHHHHHHHHHHHHTTCS-SHHHHHHHHHHHHHT
T ss_pred HHHHHHHhch--hhhHHHHHHHHHHHcCCC-chhHHHHHHHHHHHh
Confidence 9999764322 223345677777766554 468999998887653
No 51
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=98.67 E-value=1.3e-07 Score=110.15 Aligned_cols=267 Identities=13% Similarity=0.067 Sum_probs=174.1
Q ss_pred cCchHHHhcccCCCCccccchHHHHhhc-CchhHHHHHh-------cCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCcc
Q 007520 308 KDYISKGSSRFGAPMSLQKSNPSRELSG-QRATIAKICD-------EVGLPKILQLLTSEDPDVQIHAVKVVANLAAEDI 379 (600)
Q Consensus 308 ~g~i~~Lv~~L~s~~~~~r~~a~~~L~~-~~~~~~~i~e-------~GgV~~Lv~LL~s~~~~vr~~Aa~aL~nLa~~~~ 379 (600)
.+.++.|+..+.++....+..++..+.. .......+.. .+.++.++.++.++++.+|..|+.+|.++.....
T Consensus 127 p~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~ 206 (852)
T 4fdd_A 127 PDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRT 206 (852)
T ss_dssp TTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTC
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccc
Confidence 4578889999988877777766654211 1111111111 1236667788889999999999999998775322
Q ss_pred hHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcC-CccHHHHHHhCchhhhHhhhccCCCHHHHHHHHHHHHHH
Q 007520 380 NQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMN-EMNQGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANL 458 (600)
Q Consensus 380 ~~~~iv~~G~I~~Lv~lL~~~~~~~v~~~Al~aL~NLa~~-~~~r~~I~~~G~I~~Lv~lL~~~~~~~v~~~Aa~aL~nL 458 (600)
......-.+.++.++.++. ++++.++..|+.+|.+|+.. +..-...+ .+.++.++.++. +.++.++..|+..+..+
T Consensus 207 ~~~~~~~~~~l~~l~~~~~-d~~~~vr~~a~~~L~~l~~~~~~~~~~~l-~~l~~~l~~~~~-~~~~~vr~~a~e~l~~l 283 (852)
T 4fdd_A 207 QALMLHIDSFIENLFALAG-DEEPEVRKNVCRALVMLLEVRMDRLLPHM-HNIVEYMLQRTQ-DQDENVALEACEFWLTL 283 (852)
T ss_dssp HHHHTSHHHHHHHHHHHHT-CCCHHHHHHHHHHHHHHHHHCHHHHGGGH-HHHHHHHHHHHT-CSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHHHhCHHHHHHHH-HHHHHHHHHHcc-CCcHHHHHHHHHHHHHH
Confidence 2110001135777777776 67889999999999999875 22111111 246777777775 46788999999999999
Q ss_pred hCCchhHHHHHH--cChHHHHHHHH-----------cC-----------CCHHHHHHHHHHHHHhhcCCchhhhhcchhh
Q 007520 459 CGNEKLHTMLEE--DGAIKALLAMV-----------RS-----------GNIDVIAQVARGLANFAKCESRAIVQGQRKG 514 (600)
Q Consensus 459 a~~~e~r~~i~~--~G~i~~Lv~lL-----------~s-----------~~~~v~~~A~~aL~nLa~~~~~~~~q~~~~~ 514 (600)
+..+..+..+.. ...++.++..+ .+ .+..++..|+.+|..|+...+.
T Consensus 284 ~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~--------- 354 (852)
T 4fdd_A 284 AEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRD--------- 354 (852)
T ss_dssp TTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGG---------
T ss_pred hcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccH---------
Confidence 876544432211 24566676666 22 1224688899999998854211
Q ss_pred HHHHHhCCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCchhHHHHHHcccHHHHHHhhhcCChHHHHHHHHHHHhc
Q 007520 515 RSHLMEDSALEWLIANSKTNSASTRRHVELALCHLAQNEDNARDFISRGGAKELVQISIESSREDIRNLAKKTMKS 590 (600)
Q Consensus 515 r~~l~e~g~l~~Lv~Ll~s~~~~v~~~Aa~aL~nLa~~~~~~~~lv~~G~l~~Lv~ll~~~~~~~ir~~A~~~L~~ 590 (600)
.+. ...++.+..++.+.+..+|..|+++|.+++......-.-.-.+.++.|+..+.+++ +.+|..|..++..
T Consensus 355 --~~~-~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~d~~-~~Vr~~a~~~l~~ 426 (852)
T 4fdd_A 355 --ELL-PHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKK-ALVRSITCWTLSR 426 (852)
T ss_dssp --GGH-HHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTTCSS-HHHHHHHHHHHHH
T ss_pred --HHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHH
Confidence 111 24678888888899999999999999999876543211123467888999987765 5688777665543
No 52
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=98.65 E-value=2.1e-07 Score=102.57 Aligned_cols=223 Identities=11% Similarity=0.023 Sum_probs=144.1
Q ss_pred cCchHHHhcccCCCCccccchHHHHh---hc-CchhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCcchHHH
Q 007520 308 KDYISKGSSRFGAPMSLQKSNPSREL---SG-QRATIAKICDEVGLPKILQLLTSEDPDVQIHAVKVVANLAAEDINQEK 383 (600)
Q Consensus 308 ~g~i~~Lv~~L~s~~~~~r~~a~~~L---~~-~~~~~~~i~e~GgV~~Lv~LL~s~~~~vr~~Aa~aL~nLa~~~~~~~~ 383 (600)
...+|.+..++.+.....|..++..+ .. .+. .......+|.+..++.+++..+|..|+.+|+.++..-+. .
T Consensus 202 ~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~--~ 276 (588)
T 1b3u_A 202 SEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQ---EDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGP--E 276 (588)
T ss_dssp HTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCH---HHHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCH--H
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCH---HHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCc--c
Confidence 45677788888777777777766652 21 111 112234577777888899999999999999998862111 1
Q ss_pred HHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcC--CccHHHHHHhCchhhhHhhhccCCCHHHHHHHHHHHHHHhCC
Q 007520 384 IVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMN--EMNQGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLCGN 461 (600)
Q Consensus 384 iv~~G~I~~Lv~lL~~~~~~~v~~~Al~aL~NLa~~--~~~r~~I~~~G~I~~Lv~lL~~~~~~~v~~~Aa~aL~nLa~~ 461 (600)
......++.++.++. ++++.++..|+.+|..++.. +..+....-...+|.+..++. ..++.++..++++|..++..
T Consensus 277 ~~~~~l~~~l~~~l~-d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~-d~~~~vR~~a~~~l~~l~~~ 354 (588)
T 1b3u_A 277 ITKTDLVPAFQNLMK-DCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVS-DANQHVKSALASVIMGLSPI 354 (588)
T ss_dssp HHHHTHHHHHHHHHT-CSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHT-CSCHHHHHHHHTTGGGGHHH
T ss_pred cchhHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHH
Confidence 223346888889888 77889999999999999876 332322233446778888884 47789999999998888632
Q ss_pred chhHHHHHHcChHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchhhhhcchhhHHHHHhCCcHHHHHHhhcCCCHHHHHH
Q 007520 462 EKLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSKTNSASTRRH 541 (600)
Q Consensus 462 ~e~r~~i~~~G~i~~Lv~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~q~~~~~r~~l~e~g~l~~Lv~Ll~s~~~~v~~~ 541 (600)
-.. .......++.+..++.++++.|+..++.+|..++..-+. . ......+|.|..++.+.+..++..
T Consensus 355 ~~~--~~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~----------~-~~~~~~lp~l~~~~~d~~~~vr~~ 421 (588)
T 1b3u_A 355 LGK--DNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGI----------R-QLSQSLLPAIVELAEDAKWRVRLA 421 (588)
T ss_dssp HCH--HHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCH----------H-HHHHHHHHHHHHHHTCSSHHHHHH
T ss_pred hhH--hHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCH----------H-HHHHHHHHHHHHHhcCCCchHHHH
Confidence 110 111234678888888888899999998888887643210 0 001124444444444445555555
Q ss_pred HHHHHHHhh
Q 007520 542 VELALCHLA 550 (600)
Q Consensus 542 Aa~aL~nLa 550 (600)
++.+|..++
T Consensus 422 ~~~~l~~l~ 430 (588)
T 1b3u_A 422 IIEYMPLLA 430 (588)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555555443
No 53
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=98.65 E-value=2.1e-06 Score=96.93 Aligned_cols=334 Identities=12% Similarity=0.037 Sum_probs=198.0
Q ss_pred HHHHHhhhhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh------chHHHHHHHHhhhHHHHhh
Q 007520 206 VKKLLSDYQNSNQGQKEVHELCVKLKETRQLHESAVYEVQTLKSEYKNLLEEKET------MSDELQAARQRLLVEEKQR 279 (600)
Q Consensus 206 ~~~~~~~~q~~~~~~~e~~~l~~~~~d~~~~~e~~~~el~~l~~~~~~l~~~~~~------~~~el~~~~~~l~~e~~~~ 279 (600)
++.++.+........+|.......+.+++..|.+-... ..+..+..+.-..-. +..++.++- .......
T Consensus 12 l~~~i~~ir~~~~~~~e~~~i~~e~~~ir~~l~~~~~~--~k~~~l~kli~~~~~G~d~~~~~~~vik~~---~s~~~~~ 86 (618)
T 1w63_A 12 LRELIRTIRTARTQAEEREMIQKECAAIRSSFREEDNT--YRCRNVAKLLYMHMLGYPAHFGQLECLKLI---ASQKFTD 86 (618)
T ss_dssp HHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHTTTCTT--THHHHHHHHHHHHHTTCCCGGGHHHHHHHH---HSSSHHH
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHHHhhCCCHH--HHHHHHHHHHHHHHcCCCCcchHHHHHHHH---cCCchHH
Confidence 66777787777777778888888888888888764222 111112222211111 133444432 1222223
Q ss_pred hhHHHHHHHHhccCCCCCCccccccccccCchHHHhcccCCCCccccchHHHHhhc-CchhHHHHHhcCCHHHHHHhhCC
Q 007520 280 KAIEYELVKLKKTAPEHDDDFEDKKPYTKDYISKGSSRFGAPMSLQKSNPSRELSG-QRATIAKICDEVGLPKILQLLTS 358 (600)
Q Consensus 280 ~~le~~~~~l~~~l~~l~~~~~~~~~~~~g~i~~Lv~~L~s~~~~~r~~a~~~L~~-~~~~~~~i~e~GgV~~Lv~LL~s 358 (600)
+++-|--. ... +..+.+ +..-.+..+..-+.++++..+..|+++++. ..+. ++ ...++.+..+|.+
T Consensus 87 Krl~Yl~~--~~~---~~~~~e----~~~l~in~l~kDL~~~n~~vr~lAL~~L~~i~~~~---~~-~~l~~~l~~~L~~ 153 (618)
T 1w63_A 87 KRIGYLGA--MLL---LDERQD----VHLLMTNCIKNDLNHSTQFVQGLALCTLGCMGSSE---MC-RDLAGEVEKLLKT 153 (618)
T ss_dssp HHHHHHHH--HHH---CCCCHH----HHHHHHHHHHHHHSCSSSHHHHHHHHHHHHHCCHH---HH-HHHHHHHHHHHHS
T ss_pred HHHHHHHH--HHH---hCCCcH----HHHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCCHH---HH-HHHHHHHHHHHcC
Confidence 33333311 111 111111 112356667777888888888888887332 2221 22 2446778899999
Q ss_pred CCHHHHHHHHHHHHHhhC-CcchHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcC-CccHHHHHHhCchhhhH
Q 007520 359 EDPDVQIHAVKVVANLAA-EDINQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMN-EMNQGLIMSRGGGQLLA 436 (600)
Q Consensus 359 ~~~~vr~~Aa~aL~nLa~-~~~~~~~iv~~G~I~~Lv~lL~~~~~~~v~~~Al~aL~NLa~~-~~~r~~I~~~G~I~~Lv 436 (600)
.++.||..|+.++.++.. +++.. . +.++.+..+|. +.++.++..|+.+|..++.. ++....+ ...+|.++
T Consensus 154 ~~~~VRk~A~~al~~l~~~~p~~v----~-~~~~~l~~lL~-D~d~~V~~~Al~~L~~i~~~~~~~~~~~--~~~v~~l~ 225 (618)
T 1w63_A 154 SNSYLRKKAALCAVHVIRKVPELM----E-MFLPATKNLLN-EKNHGVLHTSVVLLTEMCERSPDMLAHF--RKLVPQLV 225 (618)
T ss_dssp CCHHHHHHHHHHHHHHHHHCGGGG----G-GGGGGTTTSTT-CCCHHHHHHHHHHHHHHCCSHHHHHHHH--HTTHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHChHHH----H-HHHHHHHHHhC-CCCHhHHHHHHHHHHHHHHhChHHHHHH--HHHHHHHH
Confidence 999999999999999987 55432 1 46677777777 77899999999999999876 3322222 23566666
Q ss_pred hhhcc--------------CCCHHHHHHHHHHHHHHhCC-chhHHH-------HH-------------------------
Q 007520 437 KTASK--------------TDDPQTLRMVAGALANLCGN-EKLHTM-------LE------------------------- 469 (600)
Q Consensus 437 ~lL~~--------------~~~~~v~~~Aa~aL~nLa~~-~e~r~~-------i~------------------------- 469 (600)
.+|.. ..+|-.+..++.+|+.++.. +..... +.
T Consensus 226 ~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~ 305 (618)
T 1w63_A 226 RILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSSEAMNDILAQVATNTETSKNVGNAILYETVLTIMDIK 305 (618)
T ss_dssp HHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHHHHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhcC
Confidence 55532 23555666666666666533 221110 00
Q ss_pred -----HcChHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchhhhhcchhhHHHHHhCCcHHHHHHhhcCCCHHHHHHHHH
Q 007520 470 -----EDGAIKALLAMVRSGNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSKTNSASTRRHVEL 544 (600)
Q Consensus 470 -----~~G~i~~Lv~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~q~~~~~r~~l~e~g~l~~Lv~Ll~s~~~~v~~~Aa~ 544 (600)
...++..|..++.++++.++..|+.+|..++...|. .+ ....+.++..+.+++..++..|..
T Consensus 306 ~~~~l~~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p~-----------~~--~~~~~~i~~~l~d~d~~Ir~~ale 372 (618)
T 1w63_A 306 SESGLRVLAINILGRFLLNNDKNIRYVALTSLLKTVQTDHN-----------AV--QRHRSTIVDCLKDLDVSIKRRAME 372 (618)
T ss_dssp CCHHHHHHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHHH-----------HH--GGGHHHHHHGGGSSCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCHH-----------HH--HHHHHHHHHHccCCChhHHHHHHH
Confidence 012455666667777777777777777777644321 12 235667888889999999999999
Q ss_pred HHHHhhcCchhHHHHHHcccHHHHHHhhhcCChHHHHHHHH
Q 007520 545 ALCHLAQNEDNARDFISRGGAKELVQISIESSREDIRNLAK 585 (600)
Q Consensus 545 aL~nLa~~~~~~~~lv~~G~l~~Lv~ll~~~~~~~ir~~A~ 585 (600)
+|..|+..... ..+ +..|...+...+ .+++..+.
T Consensus 373 lL~~l~~~~nv-~~i-----v~eL~~~l~~~d-~e~r~~~v 406 (618)
T 1w63_A 373 LSFALVNGNNI-RGM-----MKELLYFLDSCE-PEFKADCA 406 (618)
T ss_dssp HHHHHCCSSST-HHH-----HHHHHHHHHHCC-HHHHHHHH
T ss_pred HHHHHcccccH-HHH-----HHHHHHHHHhCC-HHHHHHHH
Confidence 99999775432 222 355666665544 34554444
No 54
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=98.64 E-value=3.8e-06 Score=94.19 Aligned_cols=268 Identities=15% Similarity=0.141 Sum_probs=158.3
Q ss_pred hHHHhcccCCCCccccchHHHHhhc-CchhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhC-CcchHHHHHHcC
Q 007520 311 ISKGSSRFGAPMSLQKSNPSRELSG-QRATIAKICDEVGLPKILQLLTSEDPDVQIHAVKVVANLAA-EDINQEKIVEEG 388 (600)
Q Consensus 311 i~~Lv~~L~s~~~~~r~~a~~~L~~-~~~~~~~i~e~GgV~~Lv~LL~s~~~~vr~~Aa~aL~nLa~-~~~~~~~iv~~G 388 (600)
++.+...+.++++..|..|+..++. ..+... ...++.+..++.+.++.||..|+.++..+.. +++.. ...+
T Consensus 88 ~n~l~kdL~~~n~~ir~~AL~~L~~i~~~~~~----~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~---~~~~ 160 (591)
T 2vgl_B 88 VNSFVKDCEDPNPLIRALAVRTMGCIRVDKIT----EYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMV---EDQG 160 (591)
T ss_dssp HHHHGGGSSSSSHHHHHHHHHHHHTCCSGGGH----HHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCH---HHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHcCChHHHH----HHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhhc---cccc
Confidence 4455555666666666666666332 221111 1124566677777777777777777777765 33321 2234
Q ss_pred CHHHHHHHHccCCCHHHHHHHHHHHHHhhcC-Ccc---------HHHHHH----------------------------hC
Q 007520 389 GLDALLLLLRTSQNTTILRVASGAIANLAMN-EMN---------QGLIMS----------------------------RG 430 (600)
Q Consensus 389 ~I~~Lv~lL~~~~~~~v~~~Al~aL~NLa~~-~~~---------r~~I~~----------------------------~G 430 (600)
.++.|..+|. ++++.++..|+.+|..++.. +.. -..++. ..
T Consensus 161 ~~~~l~~lL~-d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~~~~ 239 (591)
T 2vgl_B 161 FLDSLRDLIA-DSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDREAQS 239 (591)
T ss_dssp HHHHHHHTTS-CSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHHHHH
T ss_pred HHHHHHHHhC-CCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHHHHH
Confidence 5666777776 66777777777777777765 211 111111 13
Q ss_pred chhhhHhhhccCCCHHHHHHHHHHHHHHhC----CchhHHHHHHcChHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchh
Q 007520 431 GGQLLAKTASKTDDPQTLRMVAGALANLCG----NEKLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFAKCESRA 506 (600)
Q Consensus 431 ~I~~Lv~lL~~~~~~~v~~~Aa~aL~nLa~----~~e~r~~i~~~G~i~~Lv~lL~s~~~~v~~~A~~aL~nLa~~~~~~ 506 (600)
.++.+..++. +.++.++..|++++..+.. +++....+. ....+.|+.++ ++++.++..|+.+|..++...|..
T Consensus 240 ~l~~l~~~l~-~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~-~~~~~~L~~L~-~~d~~vr~~aL~~l~~i~~~~p~~ 316 (591)
T 2vgl_B 240 ICERVTPRLS-HANSAVVLSAVKVLMKFLELLPKDSDYYNMLL-KKLAPPLVTLL-SGEPEVQYVALRNINLIVQKRPEI 316 (591)
T ss_dssp HHHHHTTCSC-SSTTHHHHHHHHHHHHSCCSCCBTTBSHHHHH-HHTHHHHHHHT-TSCHHHHHHHHHHHHHHHHHCCST
T ss_pred HHHHHHHHHc-CCChHHHHHHHHHHHHHhhccCCCHHHHHHHH-HHHHHHHHHHh-cCCccHHHHHHHHHHHHHHhChHH
Confidence 4556666664 4677999999999999863 344433332 34456777655 488999999999999998755543
Q ss_pred hhhc--------c--hhhHH-H------HHhCC----cHHHHHHhhcCCCHHHHHHHHHHHHHhhcCchhHHHHHHcccH
Q 007520 507 IVQG--------Q--RKGRS-H------LMEDS----ALEWLIANSKTNSASTRRHVELALCHLAQNEDNARDFISRGGA 565 (600)
Q Consensus 507 ~~q~--------~--~~~r~-~------l~e~g----~l~~Lv~Ll~s~~~~v~~~Aa~aL~nLa~~~~~~~~lv~~G~l 565 (600)
.... + ...|. . +.... .++.|..++.+.+..++..++++++.++..-.. .....+
T Consensus 317 ~~~~~~~~~~~~~d~~~Ir~~al~~L~~l~~~~nv~~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~~~----~~~~~v 392 (591)
T 2vgl_B 317 LKQEIKVFFVKYNDPIYVKLEKLDIMIRLASQANIAQVLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQ----SAERCV 392 (591)
T ss_dssp TTTCTTTTSCCTTSCHHHHHHHHHHHHHTCCSSTHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTCHH----HHHHHH
T ss_pred HHHHHHhheeccCChHHHHHHHHHHHHHHCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhChh----HHHHHH
Confidence 2110 0 01111 1 11222 344555667788999999999999999865321 123466
Q ss_pred HHHHHhhhcCChHHHHHHHH----HHHhcCccc
Q 007520 566 KELVQISIESSREDIRNLAK----KTMKSNPRL 594 (600)
Q Consensus 566 ~~Lv~ll~~~~~~~ir~~A~----~~L~~~p~~ 594 (600)
+.|+.++.... +.++..++ .++...|..
T Consensus 393 ~~Ll~ll~~~~-~~v~~e~i~~l~~ii~~~p~~ 424 (591)
T 2vgl_B 393 STLLDLIQTKV-NYVVQEAIVVIRDIFRKYPNK 424 (591)
T ss_dssp HHHHHHHHTCC-HHHHHHHHHHHHHHHHHSCSS
T ss_pred HHHHHHHcccc-hHHHHHHHHHHHHHHHHCcch
Confidence 77888887654 33443333 344455554
No 55
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=98.56 E-value=1.4e-06 Score=97.84 Aligned_cols=247 Identities=13% Similarity=0.090 Sum_probs=170.3
Q ss_pred chHHHhcccCCCCccccchHHHH---hhc-CchhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCcchHHHHH
Q 007520 310 YISKGSSRFGAPMSLQKSNPSRE---LSG-QRATIAKICDEVGLPKILQLLTSEDPDVQIHAVKVVANLAAEDINQEKIV 385 (600)
Q Consensus 310 ~i~~Lv~~L~s~~~~~r~~a~~~---L~~-~~~~~~~i~e~GgV~~Lv~LL~s~~~~vr~~Aa~aL~nLa~~~~~~~~iv 385 (600)
+++.++..+.+.....|..+.-. +.. +++. ..-.+..|..-|.++++.+|..|+.+|+++.. ++....
T Consensus 50 ~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~e~-----~~l~~n~l~kdL~~~n~~ir~~AL~~L~~i~~-~~~~~~-- 121 (591)
T 2vgl_B 50 LFPDVVNCMQTDNLELKKLVYLYLMNYAKSQPDM-----AIMAVNSFVKDCEDPNPLIRALAVRTMGCIRV-DKITEY-- 121 (591)
T ss_dssp GHHHHHHTTSSSCHHHHHHHHHHHHHHHHHSHHH-----HHTTHHHHGGGSSSSSHHHHHHHHHHHHTCCS-GGGHHH--
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHcccCchH-----HHHHHHHHHHHcCCCCHHHHHHHHHHHHcCCh-HHHHHH--
Confidence 56777888877766665443332 221 2221 12346677778889999999999999988763 322222
Q ss_pred HcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcC-CccHHHHHHhCchhhhHhhhccCCCHHHHHHHHHHHHHHhCCch-
Q 007520 386 EEGGLDALLLLLRTSQNTTILRVASGAIANLAMN-EMNQGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLCGNEK- 463 (600)
Q Consensus 386 ~~G~I~~Lv~lL~~~~~~~v~~~Al~aL~NLa~~-~~~r~~I~~~G~I~~Lv~lL~~~~~~~v~~~Aa~aL~nLa~~~e- 463 (600)
.++.+..++. ++++.++..|+.+|.+++.. ++. +...+.++.|..+|. .+++.++..|+++|..++.+..
T Consensus 122 ---l~~~l~~~L~-d~~~~VRk~A~~al~~i~~~~p~~---~~~~~~~~~l~~lL~-d~d~~V~~~A~~aL~~i~~~~~~ 193 (591)
T 2vgl_B 122 ---LCEPLRKCLK-DEDPYVRKTAAVCVAKLHDINAQM---VEDQGFLDSLRDLIA-DSNPMVVANAVAALSEISESHPN 193 (591)
T ss_dssp ---HHHHHHHHSS-CSCHHHHHHHHHHHHHHHHSSCCC---HHHHHHHHHHHHTTS-CSCHHHHHHHHHHHHHHTTSCCS
T ss_pred ---HHHHHHHHcC-CCChHHHHHHHHHHHHHHhhChhh---cccccHHHHHHHHhC-CCChhHHHHHHHHHHHHHhhCCC
Confidence 3567888887 78999999999999999875 442 233567889999995 5889999999999999986532
Q ss_pred hHHHHHHcChHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchhhhhcchhhHHHHHhCCcHHHHHHhhcCCCHHHHHHHH
Q 007520 464 LHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSKTNSASTRRHVE 543 (600)
Q Consensus 464 ~r~~i~~~G~i~~Lv~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~q~~~~~r~~l~e~g~l~~Lv~Ll~s~~~~v~~~Aa 543 (600)
....-...+.+..|+..+...++-++...+++|+.++..++. . ....++.+..++++.++.|+..|+
T Consensus 194 ~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~--------~-----~~~~l~~l~~~l~~~~~~V~~ea~ 260 (591)
T 2vgl_B 194 SNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDR--------E-----AQSICERVTPRLSHANSAVVLSAV 260 (591)
T ss_dssp CCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHH--------H-----HHHHHHHHTTCSCSSTTHHHHHHH
T ss_pred ccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChH--------H-----HHHHHHHHHHHHcCCChHHHHHHH
Confidence 210001224566777777778888888888888888744321 1 124677888889999999999999
Q ss_pred HHHHHhhc----CchhHHHHHHcccHHHHHHhhhcCChHHHHHHHHHHH
Q 007520 544 LALCHLAQ----NEDNARDFISRGGAKELVQISIESSREDIRNLAKKTM 588 (600)
Q Consensus 544 ~aL~nLa~----~~~~~~~lv~~G~l~~Lv~ll~~~~~~~ir~~A~~~L 588 (600)
+++..+.. +++....+. .+..+.|+.++. +.+.+|-.|...|
T Consensus 261 ~~i~~l~~~~~~~~~~~~~~~-~~~~~~L~~L~~--~d~~vr~~aL~~l 306 (591)
T 2vgl_B 261 KVLMKFLELLPKDSDYYNMLL-KKLAPPLVTLLS--GEPEVQYVALRNI 306 (591)
T ss_dssp HHHHHSCCSCCBTTBSHHHHH-HHTHHHHHHHTT--SCHHHHHHHHHHH
T ss_pred HHHHHHhhccCCCHHHHHHHH-HHHHHHHHHHhc--CCccHHHHHHHHH
Confidence 99999974 344444433 345677777664 3467777777554
No 56
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.33 E-value=4.7e-05 Score=74.40 Aligned_cols=217 Identities=14% Similarity=0.042 Sum_probs=157.4
Q ss_pred CHHHHHHhhCCCCHHHHHHHHHHHHHhhCC--cchHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcC-CccHH
Q 007520 348 GLPKILQLLTSEDPDVQIHAVKVVANLAAE--DINQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMN-EMNQG 424 (600)
Q Consensus 348 gV~~Lv~LL~s~~~~vr~~Aa~aL~nLa~~--~~~~~~iv~~G~I~~Lv~lL~~~~~~~v~~~Al~aL~NLa~~-~~~r~ 424 (600)
.+..|+.+|...|+.++..|..+|..+... ...+..+++. .++.++.+++ +.|..+.-.|+.||..|-.+ |-...
T Consensus 34 ~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~-~Ld~iI~llk-~~dEkval~A~r~L~~LLe~vpL~~~ 111 (265)
T 3b2a_A 34 ALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLER-HLDVFINALS-QENEKVTIKALRALGYLVKDVPMGSK 111 (265)
T ss_dssp HHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHH-HHHHHHHTCC-STTHHHHHHHHHHHHHHHTTCCBCHH
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHH-HHHHHHHHHh-ccchhHHHHHHHHHHHHHcCCCCCHH
Confidence 478889999999999999999999998873 4456666665 7999999997 77898999999999999988 66666
Q ss_pred HHHHhCchhhhHhhhccCCCHHHHHHHHHHHHHHhCCchhHHHHHHcChHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCc
Q 007520 425 LIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLCGNEKLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFAKCES 504 (600)
Q Consensus 425 ~I~~~G~I~~Lv~lL~~~~~~~v~~~Aa~aL~nLa~~~e~r~~i~~~G~i~~Lv~lL~s~~~~v~~~A~~aL~nLa~~~~ 504 (600)
.+.. .+..|..++. ++++-....++..+.-|..-...+ +++..+++++.+.++.++..|..+|.|++....
T Consensus 112 ~y~K--l~~aL~dlik-~~~~il~~eaae~Lgklkv~~~~~------~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~ 182 (265)
T 3b2a_A 112 TFLK--AAKTLVSLLE-SPDDMMRIETIDVLSKLQPLEDSK------LVRTYINELVVSPDLYTKVAGFCLFLNMLNSSA 182 (265)
T ss_dssp HHHH--HHHHHHHHTT-SCCHHHHHHHHHHHHHCCBSCCCH------HHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCS
T ss_pred HHHH--HHHHHHHHhc-CCCchHHHHHHHHhCcCCcccchH------HHHHHHHHHHhCCChhHHHHHHHHHHHhhcccC
Confidence 6665 3567777775 578888889999999883222222 467789999999999999999999999997642
Q ss_pred hhhhhcchhhHHHHHhCCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCchhHHHHHHc-ccHHHHHHhhhcCChHHHHHH
Q 007520 505 RAIVQGQRKGRSHLMEDSALEWLIANSKTNSASTRRHVELALCHLAQNEDNARDFISR-GGAKELVQISIESSREDIRNL 583 (600)
Q Consensus 505 ~~~~q~~~~~r~~l~e~g~l~~Lv~Ll~s~~~~v~~~Aa~aL~nLa~~~~~~~~lv~~-G~l~~Lv~ll~~~~~~~ir~~ 583 (600)
+.. ++ .+.+.-+-.++++.|+.++..|..+|-.+.+.+=.-..+.+- +.....-++..-..+|.++..
T Consensus 183 D~~----------i~-~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi~~~~~~~~~~~~~~v~~l~~~~~~~~~~~k 251 (265)
T 3b2a_A 183 DSG----------HL-TLILDEIPSLLQNDNEFIVELALDVLEKALSFPLLENVKIELLKISRIVDGLVYREGAPIIRLK 251 (265)
T ss_dssp SCC----------CG-GGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCCCSCCHHHHHHHHHHHHHGGGCSSCHHHHHH
T ss_pred CHH----------HH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCcccHhHHHHHHHHHHHHHHHHHhcCChhHHHH
Confidence 100 11 234555667889999999999999999997764321111111 122222333323344667777
Q ss_pred HHH
Q 007520 584 AKK 586 (600)
Q Consensus 584 A~~ 586 (600)
|..
T Consensus 252 a~~ 254 (265)
T 3b2a_A 252 AKK 254 (265)
T ss_dssp HHH
T ss_pred HHH
Confidence 763
No 57
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=98.32 E-value=1.6e-06 Score=92.29 Aligned_cols=265 Identities=12% Similarity=0.093 Sum_probs=165.4
Q ss_pred cCchHHHhcccCCC--CccccchHHHH---hhc-C-chhHHHHHhcCCHHHHHHhhCCC--CHHHHHHHHHHHHHhhCC-
Q 007520 308 KDYISKGSSRFGAP--MSLQKSNPSRE---LSG-Q-RATIAKICDEVGLPKILQLLTSE--DPDVQIHAVKVVANLAAE- 377 (600)
Q Consensus 308 ~g~i~~Lv~~L~s~--~~~~r~~a~~~---L~~-~-~~~~~~i~e~GgV~~Lv~LL~s~--~~~vr~~Aa~aL~nLa~~- 377 (600)
.+.+|.|+..+.++ ....+..++.. +.. . .......+ ...++.++.++.++ ++.+|..|+.++.++...
T Consensus 127 ~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~-~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~ 205 (462)
T 1ibr_B 127 PELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKS-NEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFT 205 (462)
T ss_dssp TTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGH-HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 45778888888777 66666666654 221 1 11111111 12356777888777 799999999999997642
Q ss_pred cchH-HHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcC-CccHHHHHHhCchhhhHhhhccCCCHHHHHHHHHHH
Q 007520 378 DINQ-EKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMN-EMNQGLIMSRGGGQLLAKTASKTDDPQTLRMVAGAL 455 (600)
Q Consensus 378 ~~~~-~~iv~~G~I~~Lv~lL~~~~~~~v~~~Al~aL~NLa~~-~~~r~~I~~~G~I~~Lv~lL~~~~~~~v~~~Aa~aL 455 (600)
..+- ........++.+...+. +++..++..++.+|..++.. +..-...+..+.++.++..+. ..++.++..++..+
T Consensus 206 ~~~~~~~~~~~~l~~~l~~~~~-~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~v~~~a~~~l 283 (462)
T 1ibr_B 206 KANFDKESERHFIMQVVCEATQ-CPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMK-SDIDEVALQGIEFW 283 (462)
T ss_dssp HHHHTSHHHHHHHHHHHHHHTT-CSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHH-CSSHHHHHHHHHHH
T ss_pred HHhhhhhHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCchHHHHHHHHHH
Confidence 2111 00011112444555554 67889999999999999865 221111111145666666664 46778999999988
Q ss_pred HHHhCCchhHH------------------HHHH---cChHHHHHHHHcC-------CCHHHHHHHHHHHHHhhcCCchhh
Q 007520 456 ANLCGNEKLHT------------------MLEE---DGAIKALLAMVRS-------GNIDVIAQVARGLANFAKCESRAI 507 (600)
Q Consensus 456 ~nLa~~~e~r~------------------~i~~---~G~i~~Lv~lL~s-------~~~~v~~~A~~aL~nLa~~~~~~~ 507 (600)
..++....... .+.. ...++.++..+.. .+..++..|+.+|..|+..-+.
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~-- 361 (462)
T 1ibr_B 284 SNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED-- 361 (462)
T ss_dssp HHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTT--
T ss_pred HHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccH--
Confidence 88874321000 0111 2356666666642 2346889999999999854211
Q ss_pred hhcchhhHHHHHhCCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCch--hHHHHHHcccHHHHHHhhhcCChHHHHHHHH
Q 007520 508 VQGQRKGRSHLMEDSALEWLIANSKTNSASTRRHVELALCHLAQNED--NARDFISRGGAKELVQISIESSREDIRNLAK 585 (600)
Q Consensus 508 ~q~~~~~r~~l~e~g~l~~Lv~Ll~s~~~~v~~~Aa~aL~nLa~~~~--~~~~lv~~G~l~~Lv~ll~~~~~~~ir~~A~ 585 (600)
.+. ..+++.+...+.+.+..++..|+.+|..++.+.. .....+ ...++.|+..+.+++ +.+|..|.
T Consensus 362 ---------~~~-~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l-~~~~~~l~~~l~d~~-~~Vr~~a~ 429 (462)
T 1ibr_B 362 ---------DIV-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-IQAMPTLIELMKDPS-VVVRDTAA 429 (462)
T ss_dssp ---------THH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTT-TTHHHHHHHGGGCSC-HHHHHHHH
T ss_pred ---------HHH-HHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHH-HHHHHHHHHHhcCCC-HHHHHHHH
Confidence 111 2467777778889999999999999999986432 111111 568899999998766 67888877
Q ss_pred HHHh
Q 007520 586 KTMK 589 (600)
Q Consensus 586 ~~L~ 589 (600)
.+|.
T Consensus 430 ~~l~ 433 (462)
T 1ibr_B 430 WTVG 433 (462)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6553
No 58
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.31 E-value=9.3e-06 Score=79.99 Aligned_cols=183 Identities=14% Similarity=0.133 Sum_probs=134.4
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHhhCC-cchH-HHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcC--CccHHHH
Q 007520 351 KILQLLTSEDPDVQIHAVKVVANLAAE-DINQ-EKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMN--EMNQGLI 426 (600)
Q Consensus 351 ~Lv~LL~s~~~~vr~~Aa~aL~nLa~~-~~~~-~~iv~~G~I~~Lv~lL~~~~~~~v~~~Al~aL~NLa~~--~~~r~~I 426 (600)
.++..+.+.+...|..|+..|..+... +... ..+ ...++.|...+..+.+..++..|+.+|..|+.. +... ..
T Consensus 19 ~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~--~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~-~~ 95 (242)
T 2qk2_A 19 DFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEY--GALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFS-NY 95 (242)
T ss_dssp THHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCC--HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGH-HH
T ss_pred HHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCH--HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHH-HH
Confidence 467888899999999999999988763 3321 011 123666777774367889999999999999965 2222 22
Q ss_pred HHhCchhhhHhhhccCCCHHHHHHHHHHHHHHhCCchhHHHHHHcChHHHHHHHHcCCCHHHHHHHHHHHHHhhcC-Cch
Q 007520 427 MSRGGGQLLAKTASKTDDPQTLRMVAGALANLCGNEKLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFAKC-ESR 505 (600)
Q Consensus 427 ~~~G~I~~Lv~lL~~~~~~~v~~~Aa~aL~nLa~~~e~r~~i~~~G~i~~Lv~lL~s~~~~v~~~A~~aL~nLa~~-~~~ 505 (600)
+. ..+|.|+..+.+ .++.++..++.+|.+++...... ..++.+...+.+.++.++..++..|..+... ++.
T Consensus 96 ~~-~ilp~ll~~l~d-~~~~vr~~a~~aL~~~~~~~~~~------~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~ 167 (242)
T 2qk2_A 96 AS-ACVPSLLEKFKE-KKPNVVTALREAIDAIYASTSLE------AQQESIVESLSNKNPSVKSETALFIARALTRTQPT 167 (242)
T ss_dssp HH-HHHHHHHHGGGC-CCHHHHHHHHHHHHHHHTTSCHH------HHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGG
T ss_pred HH-HHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHcCCHH------HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCC
Confidence 22 378889999865 67889999999999998654322 3677788888999999999999999996533 222
Q ss_pred hhhhcchhhHHHHHhCCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcC
Q 007520 506 AIVQGQRKGRSHLMEDSALEWLIANSKTNSASTRRHVELALCHLAQN 552 (600)
Q Consensus 506 ~~~q~~~~~r~~l~e~g~l~~Lv~Ll~s~~~~v~~~Aa~aL~nLa~~ 552 (600)
. .....+ ...+|.|+.++.+.++.+|..|..++..++..
T Consensus 168 ~------~~~~~l--~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~ 206 (242)
T 2qk2_A 168 A------LNKKLL--KLLTTSLVKTLNEPDPTVRDSSAEALGTLIKL 206 (242)
T ss_dssp G------CCHHHH--HHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHH
T ss_pred C------ccHHHH--HHHHHHHHHHhcCCChHHHHHHHHHHHHHHHH
Confidence 1 011122 25789999999999999999999999998643
No 59
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=98.25 E-value=3.6e-06 Score=89.64 Aligned_cols=233 Identities=10% Similarity=0.045 Sum_probs=149.8
Q ss_pred ccCchHHHhcccCCC--CccccchHHHHhh----cCchhHH-HHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhC-Cc
Q 007520 307 TKDYISKGSSRFGAP--MSLQKSNPSRELS----GQRATIA-KICDEVGLPKILQLLTSEDPDVQIHAVKVVANLAA-ED 378 (600)
Q Consensus 307 ~~g~i~~Lv~~L~s~--~~~~r~~a~~~L~----~~~~~~~-~i~e~GgV~~Lv~LL~s~~~~vr~~Aa~aL~nLa~-~~ 378 (600)
....++.++..+.+. ....|..++.++. .-..... ..+..-.++.+...+.++++.++..++.+|..++. .+
T Consensus 170 ~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~ 249 (462)
T 1ibr_B 170 SNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYY 249 (462)
T ss_dssp HHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCG
T ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 345677788888877 4566776666522 1111100 00111124555567788899999999999999886 32
Q ss_pred ch-HHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcCCc------------------cHHHHHH---hCchhhhH
Q 007520 379 IN-QEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMNEM------------------NQGLIMS---RGGGQLLA 436 (600)
Q Consensus 379 ~~-~~~iv~~G~I~~Lv~lL~~~~~~~v~~~Al~aL~NLa~~~~------------------~r~~I~~---~G~I~~Lv 436 (600)
.. ... +..+.++.++..+. +.++.++..|+.++.+++.... ....++. ...+|.++
T Consensus 250 ~~~~~~-~~~~l~~~~~~~~~-~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~ 327 (462)
T 1ibr_B 250 QYMETY-MGPALFAITIEAMK-SDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILT 327 (462)
T ss_dssp GGCTTT-TTTTHHHHHHHHHH-CSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHH-HHHHHHHHHHHHHc-CCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHH
Confidence 21 111 11145677777776 6788899999999988875420 0001111 23566666
Q ss_pred hhhccC------CCHHHHHHHHHHHHHHhCCchhHHHHHHcChHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchhhhhc
Q 007520 437 KTASKT------DDPQTLRMVAGALANLCGNEKLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFAKCESRAIVQG 510 (600)
Q Consensus 437 ~lL~~~------~~~~v~~~Aa~aL~nLa~~~e~r~~i~~~G~i~~Lv~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~q~ 510 (600)
..+... ++..++..|+.+|..|+..-. . .+. ..+++.+...+.+.+..++..|+.+|+.++.+....
T Consensus 328 ~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~-~-~~~-~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~---- 400 (462)
T 1ibr_B 328 QTLTKQDENDDDDDWNPCKAAGVCLMLLATCCE-D-DIV-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPS---- 400 (462)
T ss_dssp HHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTT-T-THH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTT----
T ss_pred HHHHhcccccccccchHHHHHHHHHHHHHHhcc-H-HHH-HHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHH----
Confidence 666431 234678888889988874311 1 111 246677777888999999999999999998643210
Q ss_pred chhhHHHHHhCCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcC
Q 007520 511 QRKGRSHLMEDSALEWLIANSKTNSASTRRHVELALCHLAQN 552 (600)
Q Consensus 511 ~~~~r~~l~e~g~l~~Lv~Ll~s~~~~v~~~Aa~aL~nLa~~ 552 (600)
..+. . -...+|.|+.++.++++.||..|+++|.+++..
T Consensus 401 --~~~~-~-l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~ 438 (462)
T 1ibr_B 401 --QLKP-L-VIQAMPTLIELMKDPSVVVRDTAAWTVGRICEL 438 (462)
T ss_dssp --TTCT-T-TTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred --HHHH-H-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 0011 1 156899999999999999999999999999753
No 60
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=98.09 E-value=5.8e-06 Score=59.66 Aligned_cols=51 Identities=25% Similarity=0.335 Sum_probs=46.9
Q ss_pred HHHHHHHhHHHHHHHhhhHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHhhhhhhhhhhhhhHHhhhhhhhhhhhHHHHH
Q 007520 104 SMRNLVTRSEFLEKENAHLELEVEKILGELNHQKDQNNLKREKIVQLEISLKNSKQYEMENSTYQKALADTTQLYEKKIA 183 (600)
Q Consensus 104 ~~~~l~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~ 183 (600)
+|++|+.|+|.|++||++|+.|+++ ||.+..+|+..|..+.+.++
T Consensus 4 sYdQL~~QVe~Lk~ENshLrrEL~d-----------------------------------NS~~lskLE~ets~mKevlk 48 (54)
T 1deb_A 4 SYDQLLKQVEALKMENSNLRQELED-----------------------------------NSNHLTKLETEASNMKEVLK 48 (54)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHH-----------------------------------HHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHh-----------------------------------hHHHHHHHHhhhhhHHHHHH
Confidence 5779999999999999999999998 99999999999999999999
Q ss_pred HHHHHh
Q 007520 184 ELNKKL 189 (600)
Q Consensus 184 ~l~~~l 189 (600)
.|++.|
T Consensus 49 ~lq~~i 54 (54)
T 1deb_A 49 QLQGSI 54 (54)
T ss_dssp HHHHCC
T ss_pred HHcccC
Confidence 888653
No 61
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=98.08 E-value=5.9e-05 Score=87.16 Aligned_cols=266 Identities=10% Similarity=0.024 Sum_probs=163.0
Q ss_pred ccCchHHHhcccCCC--CccccchHHHHhh---c-CchhH-HHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhC-Cc
Q 007520 307 TKDYISKGSSRFGAP--MSLQKSNPSRELS---G-QRATI-AKICDEVGLPKILQLLTSEDPDVQIHAVKVVANLAA-ED 378 (600)
Q Consensus 307 ~~g~i~~Lv~~L~s~--~~~~r~~a~~~L~---~-~~~~~-~~i~e~GgV~~Lv~LL~s~~~~vr~~Aa~aL~nLa~-~~ 378 (600)
....++.+...+.++ +...+..++.++. . -.... ........++.+...+.+++..+|..|+.+|..++. .+
T Consensus 170 ~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~ 249 (876)
T 1qgr_A 170 SNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYY 249 (876)
T ss_dssp HHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSG
T ss_pred HHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhH
Confidence 344566666667665 3455665655421 1 11110 000111235666677788899999999999999886 44
Q ss_pred chHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcCCc----------------------cHHHHHHhCchhhhH
Q 007520 379 INQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMNEM----------------------NQGLIMSRGGGQLLA 436 (600)
Q Consensus 379 ~~~~~iv~~G~I~~Lv~lL~~~~~~~v~~~Al~aL~NLa~~~~----------------------~r~~I~~~G~I~~Lv 436 (600)
..-...+....++.++..+. +.++.++..|+.++.+++.... .....+ ...++.++
T Consensus 250 ~~~~~~~~~~l~~~~~~~~~-~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ll~~ll 327 (876)
T 1qgr_A 250 QYMETYMGPALFAITIEAMK-SDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGAL-QYLVPILT 327 (876)
T ss_dssp GGCHHHHTTTHHHHHHHHHT-CSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHH-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhc-CCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHH-HHHhHHHH
Confidence 33222333356777777776 6678899999999888875410 000011 23466677
Q ss_pred hhhcc------CCCHHHHHHHHHHHHHHhCCchhHHHHHHcChHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchhhhhc
Q 007520 437 KTASK------TDDPQTLRMVAGALANLCGNEKLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFAKCESRAIVQG 510 (600)
Q Consensus 437 ~lL~~------~~~~~v~~~Aa~aL~nLa~~~e~r~~i~~~G~i~~Lv~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~q~ 510 (600)
..+.. .++..++..|+.+|..|+..-. ..+. ...++.+...+.+.++.++..|+++|++++...+.
T Consensus 328 ~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~--~~~~-~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~----- 399 (876)
T 1qgr_A 328 QTLTKQDENDDDDDWNPCKAAGVCLMLLATCCE--DDIV-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEP----- 399 (876)
T ss_dssp HHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHG--GGGH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCH-----
T ss_pred HHhhcccccccccccHHHHHHHHHHHHHHHHCc--HhhH-HHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCH-----
Confidence 77643 1234678888888888864311 0111 24566666777888999999999999999865320
Q ss_pred chhhHHHHHhCCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCchh---HHHHHHcccHHHHHHhhhcCChHHHHHHHHHH
Q 007520 511 QRKGRSHLMEDSALEWLIANSKTNSASTRRHVELALCHLAQNEDN---ARDFISRGGAKELVQISIESSREDIRNLAKKT 587 (600)
Q Consensus 511 ~~~~r~~l~e~g~l~~Lv~Ll~s~~~~v~~~Aa~aL~nLa~~~~~---~~~lv~~G~l~~Lv~ll~~~~~~~ir~~A~~~ 587 (600)
..... .. ...+|.|+..+.++++.++..|+++|.+++..-.. .... -...++.|+..+.+. +.++..|..+
T Consensus 400 -~~~~~-~~-~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~-l~~~l~~l~~~l~~~--~~v~~~a~~a 473 (876)
T 1qgr_A 400 -SQLKP-LV-IQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVY-LAPLLQCLIEGLSAE--PRVASNVCWA 473 (876)
T ss_dssp -HHHHH-HH-HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTT-HHHHHHHHHHHTTSC--HHHHHHHHHH
T ss_pred -HHHHH-HH-HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHH-HHHHHHHHHHHHcCC--HHHHHHHHHH
Confidence 00111 11 34788999999999999999999999999753211 0111 124667777777653 5566555543
Q ss_pred H
Q 007520 588 M 588 (600)
Q Consensus 588 L 588 (600)
|
T Consensus 474 l 474 (876)
T 1qgr_A 474 F 474 (876)
T ss_dssp H
T ss_pred H
Confidence 3
No 62
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.08 E-value=4.8e-07 Score=80.90 Aligned_cols=86 Identities=19% Similarity=0.120 Sum_probs=38.5
Q ss_pred HHHHHHHHccCCCHHHHHHHHHHHHHhhcCCccHHHHHHhCchhhhHhhhccCCCHHHHHHHHHHHHHHhCCchhHHHHH
Q 007520 390 LDALLLLLRTSQNTTILRVASGAIANLAMNEMNQGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLCGNEKLHTMLE 469 (600)
Q Consensus 390 I~~Lv~lL~~~~~~~v~~~Al~aL~NLa~~~~~r~~I~~~G~I~~Lv~lL~~~~~~~v~~~Aa~aL~nLa~~~e~r~~i~ 469 (600)
++.|+.+|. ++++.++..|+++|.++.. .++++.|+.+|.+ +++.++..|+++|.++..
T Consensus 44 ~~~L~~~L~-d~~~~vR~~A~~aL~~~~~----------~~a~~~L~~~L~d-~~~~VR~~A~~aL~~~~~--------- 102 (131)
T 1te4_A 44 FEPLLESLS-NEDWRIRGAAAWIIGNFQD----------ERAVEPLIKLLED-DSGFVRSGAARSLEQIGG--------- 102 (131)
T ss_dssp HHHHHHGGG-CSCHHHHHHHHHHHGGGCS----------HHHHHHHHHHHHH-CCTHHHHHHHHHHHHHCS---------
T ss_pred HHHHHHHHc-CCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHcC-CCHHHHHHHHHHHHHhCc---------
Confidence 344444444 3444455555554444431 1234444444432 344455555555554431
Q ss_pred HcChHHHHHHHHcCCCHHHHHHHHHHHH
Q 007520 470 EDGAIKALLAMVRSGNIDVIAQVARGLA 497 (600)
Q Consensus 470 ~~G~i~~Lv~lL~s~~~~v~~~A~~aL~ 497 (600)
..+++.|+.++.++++.|+..|+.+|.
T Consensus 103 -~~a~~~L~~~l~d~~~~vr~~A~~aL~ 129 (131)
T 1te4_A 103 -ERVRAAMEKLAETGTGFARKVAVNYLE 129 (131)
T ss_dssp -HHHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred -HHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 123444555554445555555554443
No 63
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=98.06 E-value=6.9e-05 Score=86.43 Aligned_cols=263 Identities=11% Similarity=0.078 Sum_probs=158.0
Q ss_pred hHHHhcccCCCCccccchHHHH---hh-cCchhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCcc-------
Q 007520 311 ISKGSSRFGAPMSLQKSNPSRE---LS-GQRATIAKICDEVGLPKILQLLTSEDPDVQIHAVKVVANLAAEDI------- 379 (600)
Q Consensus 311 i~~Lv~~L~s~~~~~r~~a~~~---L~-~~~~~~~~i~e~GgV~~Lv~LL~s~~~~vr~~Aa~aL~nLa~~~~------- 379 (600)
++.+...+.++....+..++.. +. ..+......+...-++.++..+.+.++.++..|+.++..++....
T Consensus 226 l~~l~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~ 305 (861)
T 2bpt_A 226 MQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELA 305 (861)
T ss_dssp HHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 4444445555555555555544 21 122222222222335556677788899999999999988875321
Q ss_pred -----------hHHHHHHcCCHHHHHHHHccC------CCHHHHHHHHHHHHHhhcCCccHHHHHHhCchhhhHhhhccC
Q 007520 380 -----------NQEKIVEEGGLDALLLLLRTS------QNTTILRVASGAIANLAMNEMNQGLIMSRGGGQLLAKTASKT 442 (600)
Q Consensus 380 -----------~~~~iv~~G~I~~Lv~lL~~~------~~~~v~~~Al~aL~NLa~~~~~r~~I~~~G~I~~Lv~lL~~~ 442 (600)
.-..++ ...+|.++..+... .+..++..+..+|..++..-. ..++ ...++.+...+. +
T Consensus 306 ~~~~~~~~~~~~~~~~~-~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~--~~~~-~~l~~~l~~~l~-~ 380 (861)
T 2bpt_A 306 QFPQSPLQSYNFALSSI-KDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCG--NHIL-EPVLEFVEQNIT-A 380 (861)
T ss_dssp HCTTCSCCCCCHHHHHH-HHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHG--GGGH-HHHHHHHHHHTT-C
T ss_pred hccCCchhhHHHHHHHH-HHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHcc--HhHH-HHHHHHHHHHcC-C
Confidence 111122 23577787777632 224688889999999886511 1111 124555666664 4
Q ss_pred CCHHHHHHHHHHHHHHhCCc--hhHHHHHHcChHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchhhhhcchhhHHHHHh
Q 007520 443 DDPQTLRMVAGALANLCGNE--KLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLME 520 (600)
Q Consensus 443 ~~~~v~~~Aa~aL~nLa~~~--e~r~~i~~~G~i~~Lv~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~q~~~~~r~~l~e 520 (600)
.+..++..|+.+|+.++... +.-.... ...++.++..+.++++.|+..++++|+.++..-+.... ... .-
T Consensus 381 ~~~~~r~~a~~~l~~i~~~~~~~~~~~~l-~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~-----~~~--~~ 452 (861)
T 2bpt_A 381 DNWRNREAAVMAFGSIMDGPDKVQRTYYV-HQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESID-----PQQ--HL 452 (861)
T ss_dssp SSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSC-----TTT--TH
T ss_pred CChhHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcC-----CHH--HH
Confidence 67889999999999998543 2212222 24778888888899999999999999999854210000 000 01
Q ss_pred CCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCc-----hhHHHHHHcccHHHHHHhhhcCCh-HHHHHHHHHHH
Q 007520 521 DSALEWLIANSKTNSASTRRHVELALCHLAQNE-----DNARDFISRGGAKELVQISIESSR-EDIRNLAKKTM 588 (600)
Q Consensus 521 ~g~l~~Lv~Ll~s~~~~v~~~Aa~aL~nLa~~~-----~~~~~lv~~G~l~~Lv~ll~~~~~-~~ir~~A~~~L 588 (600)
...++.|+..+.+. +.++..|+++|.+++..- ....... ...++.|+.++...+. +.++..+..++
T Consensus 453 ~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~-~~il~~L~~~l~~~d~~~~vr~~a~~al 524 (861)
T 2bpt_A 453 PGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFY-PALVDGLIGAANRIDNEFNARASAFSAL 524 (861)
T ss_dssp HHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGH-HHHHHHHHHHHTCSCCGGGHHHHHHHHH
T ss_pred HHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHH-HHHHHHHHHHHhCcCcchHHHHHHHHHH
Confidence 24678888888765 899999999999986531 1111111 2356777777765432 34665555443
No 64
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=98.03 E-value=0.00013 Score=82.18 Aligned_cols=141 Identities=11% Similarity=0.068 Sum_probs=107.3
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHhhCCcchHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcC-CccHHHHH
Q 007520 349 LPKILQLLTSEDPDVQIHAVKVVANLAAEDINQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMN-EMNQGLIM 427 (600)
Q Consensus 349 V~~Lv~LL~s~~~~vr~~Aa~aL~nLa~~~~~~~~iv~~G~I~~Lv~lL~~~~~~~v~~~Al~aL~NLa~~-~~~r~~I~ 427 (600)
+..|..-|.++++.+|..|+.+|+++.. + .++. ..++.+..+|. ++++.++..|+.++.++... |+..
T Consensus 109 in~l~kDL~~~n~~vr~lAL~~L~~i~~-~----~~~~-~l~~~l~~~L~-~~~~~VRk~A~~al~~l~~~~p~~v---- 177 (618)
T 1w63_A 109 TNCIKNDLNHSTQFVQGLALCTLGCMGS-S----EMCR-DLAGEVEKLLK-TSNSYLRKKAALCAVHVIRKVPELM---- 177 (618)
T ss_dssp HHHHHHHHSCSSSHHHHHHHHHHHHHCC-H----HHHH-HHHHHHHHHHH-SCCHHHHHHHHHHHHHHHHHCGGGG----
T ss_pred HHHHHHhcCCCCHhHHHHHHHHHHhcCC-H----HHHH-HHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHChHHH----
Confidence 5566677789999999999999999874 2 2333 25788888888 67899999999999999864 4322
Q ss_pred HhCchhhhHhhhccCCCHHHHHHHHHHHHHHhCCc-hhHHHHHHcChHHHHHHHHc---------------CCCHHHHHH
Q 007520 428 SRGGGQLLAKTASKTDDPQTLRMVAGALANLCGNE-KLHTMLEEDGAIKALLAMVR---------------SGNIDVIAQ 491 (600)
Q Consensus 428 ~~G~I~~Lv~lL~~~~~~~v~~~Aa~aL~nLa~~~-e~r~~i~~~G~i~~Lv~lL~---------------s~~~~v~~~ 491 (600)
.+.++.+..+|. ..++.++..|+.+|..++... +....+ ...++.++.+|. ..++-.+..
T Consensus 178 -~~~~~~l~~lL~-D~d~~V~~~Al~~L~~i~~~~~~~~~~~--~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~ 253 (618)
T 1w63_A 178 -EMFLPATKNLLN-EKNHGVLHTSVVLLTEMCERSPDMLAHF--RKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVR 253 (618)
T ss_dssp -GGGGGGTTTSTT-CCCHHHHHHHHHHHHHHCCSHHHHHHHH--HTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHH
T ss_pred -HHHHHHHHHHhC-CCCHhHHHHHHHHHHHHHHhChHHHHHH--HHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHH
Confidence 257888888885 478899999999999998653 332222 256777777764 247888889
Q ss_pred HHHHHHHhhcCCc
Q 007520 492 VARGLANFAKCES 504 (600)
Q Consensus 492 A~~aL~nLa~~~~ 504 (600)
++.+|+.++..+|
T Consensus 254 il~~L~~l~~~~~ 266 (618)
T 1w63_A 254 ILRLLRILGRNDD 266 (618)
T ss_dssp HHHHHHHHTTTCH
T ss_pred HHHHHHHhCCCCH
Confidence 9999999987654
No 65
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=97.99 E-value=7.6e-07 Score=79.56 Aligned_cols=119 Identities=17% Similarity=0.125 Sum_probs=89.9
Q ss_pred CCHHHHHHHHccCCCHHHHHHHHHHHHHhhcCCccHHHHHHhCchhhhHhhhccCCCHHHHHHHHHHHHHHhCCchhHHH
Q 007520 388 GGLDALLLLLRTSQNTTILRVASGAIANLAMNEMNQGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLCGNEKLHTM 467 (600)
Q Consensus 388 G~I~~Lv~lL~~~~~~~v~~~Al~aL~NLa~~~~~r~~I~~~G~I~~Lv~lL~~~~~~~v~~~Aa~aL~nLa~~~e~r~~ 467 (600)
..++.++.+|. ++++.++..|+++|.++... .++.|+.+|. ++++.++..|+++|.++..
T Consensus 12 ~~~~~l~~~L~-~~~~~vR~~A~~~L~~~~~~-----------~~~~L~~~L~-d~~~~vR~~A~~aL~~~~~------- 71 (131)
T 1te4_A 12 SGLVPRGSHMA-DENKWVRRDVSTALSRMGDE-----------AFEPLLESLS-NEDWRIRGAAAWIIGNFQD------- 71 (131)
T ss_dssp ---------CC-SSCCCSSSSCCSSTTSCSST-----------THHHHHHGGG-CSCHHHHHHHHHHHGGGCS-------
T ss_pred ccHHHHHHHhc-CCCHHHHHHHHHHHHHhCch-----------HHHHHHHHHc-CCCHHHHHHHHHHHHhcCC-------
Confidence 35777888887 56777888888887765321 3688889986 4889999999999998753
Q ss_pred HHHcChHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchhhhhcchhhHHHHHhCCcHHHHHHhhcCCCHHHHHHHHHHHH
Q 007520 468 LEEDGAIKALLAMVRSGNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSKTNSASTRRHVELALC 547 (600)
Q Consensus 468 i~~~G~i~~Lv~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~q~~~~~r~~l~e~g~l~~Lv~Ll~s~~~~v~~~Aa~aL~ 547 (600)
.++++.|+.++.++++.|+..|+++|.++.. ..+++.|+.++.++++.|+..|+.+|.
T Consensus 72 ---~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~-------------------~~a~~~L~~~l~d~~~~vr~~A~~aL~ 129 (131)
T 1te4_A 72 ---ERAVEPLIKLLEDDSGFVRSGAARSLEQIGG-------------------ERVRAAMEKLAETGTGFARKVAVNYLE 129 (131)
T ss_dssp ---HHHHHHHHHHHHHCCTHHHHHHHHHHHHHCS-------------------HHHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred ---HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-------------------HHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 2468899999999999999999999999862 136889999999999999999999986
Q ss_pred H
Q 007520 548 H 548 (600)
Q Consensus 548 n 548 (600)
.
T Consensus 130 ~ 130 (131)
T 1te4_A 130 T 130 (131)
T ss_dssp G
T ss_pred h
Confidence 5
No 66
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=97.99 E-value=0.00014 Score=83.94 Aligned_cols=263 Identities=12% Similarity=0.090 Sum_probs=164.4
Q ss_pred cCchHHHhcccCCC--CccccchHHHH---hhc-CchhHHHHHhc---CCHHHHHHhhCCC--CHHHHHHHHHHHHHhhC
Q 007520 308 KDYISKGSSRFGAP--MSLQKSNPSRE---LSG-QRATIAKICDE---VGLPKILQLLTSE--DPDVQIHAVKVVANLAA 376 (600)
Q Consensus 308 ~g~i~~Lv~~L~s~--~~~~r~~a~~~---L~~-~~~~~~~i~e~---GgV~~Lv~LL~s~--~~~vr~~Aa~aL~nLa~ 376 (600)
...++.++..+.++ ....+..++.. +.. ..+ ..+.. ..++.++..+.++ +..+|..|+.+|.+++.
T Consensus 127 ~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~---~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~ 203 (876)
T 1qgr_A 127 PELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDP---EQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLE 203 (876)
T ss_dssp TTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCH---HHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCH---hhHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHH
Confidence 34677788888776 66666666654 221 111 11111 1255566777665 78999999999999875
Q ss_pred C-cch-HHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcC-CccHHHHHHhCchhhhHhhhccCCCHHHHHHHHH
Q 007520 377 E-DIN-QEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMN-EMNQGLIMSRGGGQLLAKTASKTDDPQTLRMVAG 453 (600)
Q Consensus 377 ~-~~~-~~~iv~~G~I~~Lv~lL~~~~~~~v~~~Al~aL~NLa~~-~~~r~~I~~~G~I~~Lv~lL~~~~~~~v~~~Aa~ 453 (600)
. +.+ .........++.+...+. +++..++..++.+|..++.. +..-...+....++.++..+. ..++.++..++.
T Consensus 204 ~~~~~~~~~~~~~~il~~l~~~~~-~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~v~~~al~ 281 (876)
T 1qgr_A 204 FTKANFDKESERHFIMQVVCEATQ-CPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMK-SDIDEVALQGIE 281 (876)
T ss_dssp GCHHHHTSHHHHHHHHHHHHHHTT-CSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHT-CSSHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhc-CCchHHHHHHHH
Confidence 2 221 000111124555666665 66788999999999999865 332222333356777777764 467789999998
Q ss_pred HHHHHhCCchh-------------------HHHH--HHcChHHHHHHHHc-------CCCHHHHHHHHHHHHHhhcCCch
Q 007520 454 ALANLCGNEKL-------------------HTML--EEDGAIKALLAMVR-------SGNIDVIAQVARGLANFAKCESR 505 (600)
Q Consensus 454 aL~nLa~~~e~-------------------r~~i--~~~G~i~~Lv~lL~-------s~~~~v~~~A~~aL~nLa~~~~~ 505 (600)
.+.+++..... ...+ .-...++.++..+. +.+..++..|+.+|..++...+.
T Consensus 282 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~ 361 (876)
T 1qgr_A 282 FWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED 361 (876)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcH
Confidence 88888743200 0000 01235666777774 23456888999999999854211
Q ss_pred hhhhcchhhHHHHHhCCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCch--hHHHHHHcccHHHHHHhhhcCChHHHHHH
Q 007520 506 AIVQGQRKGRSHLMEDSALEWLIANSKTNSASTRRHVELALCHLAQNED--NARDFISRGGAKELVQISIESSREDIRNL 583 (600)
Q Consensus 506 ~~~q~~~~~r~~l~e~g~l~~Lv~Ll~s~~~~v~~~Aa~aL~nLa~~~~--~~~~lv~~G~l~~Lv~ll~~~~~~~ir~~ 583 (600)
.+. ..+++.+...+.+.+..++..|+++|..++.... ...... .+.++.|+..+.+++ +.+|..
T Consensus 362 -----------~~~-~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~-~~~l~~l~~~l~d~~-~~vr~~ 427 (876)
T 1qgr_A 362 -----------DIV-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-IQAMPTLIELMKDPS-VVVRDT 427 (876)
T ss_dssp -----------GGH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHHHTCSS-HHHHHH
T ss_pred -----------hhH-HHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHhCCCC-HHHHHH
Confidence 111 2466777777888899999999999999986543 222222 447888898887755 567777
Q ss_pred HHHHHh
Q 007520 584 AKKTMK 589 (600)
Q Consensus 584 A~~~L~ 589 (600)
|..+|.
T Consensus 428 a~~~l~ 433 (876)
T 1qgr_A 428 AAWTVG 433 (876)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 765553
No 67
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=97.94 E-value=0.00062 Score=79.33 Aligned_cols=196 Identities=14% Similarity=0.079 Sum_probs=128.2
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHhhCCcchHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcCCccHHHHHH
Q 007520 349 LPKILQLLTSEDPDVQIHAVKVVANLAAEDINQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMNEMNQGLIMS 428 (600)
Q Consensus 349 V~~Lv~LL~s~~~~vr~~Aa~aL~nLa~~~~~~~~iv~~G~I~~Lv~lL~~~~~~~v~~~Al~aL~NLa~~~~~r~~I~~ 428 (600)
++.|..+|..++..++..|+.+|+.+.....+.. ++..|+..+....+..+++.++.+|..+.....
T Consensus 474 ~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~------ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~------- 540 (963)
T 4ady_A 474 YEALKEVLYNDSATSGEAAALGMGLCMLGTGKPE------AIHDMFTYSQETQHGNITRGLAVGLALINYGRQ------- 540 (963)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHH------HHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCG-------
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHH------HHHHHHHHHhccCcHHHHHHHHHHHHhhhCCCh-------
Confidence 5666677766676667777777776654333322 345666665556677888888888888765421
Q ss_pred hCchhhhHhhhccCCCHHHHHHHHHHHHHHhCCchhHHHHHHcChHHHHHHHH-cCCCHHHHHHHHHHHHHhhcCCchhh
Q 007520 429 RGGGQLLAKTASKTDDPQTLRMVAGALANLCGNEKLHTMLEEDGAIKALLAMV-RSGNIDVIAQVARGLANFAKCESRAI 507 (600)
Q Consensus 429 ~G~I~~Lv~lL~~~~~~~v~~~Aa~aL~nLa~~~e~r~~i~~~G~i~~Lv~lL-~s~~~~v~~~A~~aL~nLa~~~~~~~ 507 (600)
..++.++..|....+|-++..++.+++--+....+. .+|..|+..+ .+.+..|+..|+.+|+.++..++
T Consensus 541 -e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~------~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~--- 610 (963)
T 4ady_A 541 -ELADDLITKMLASDESLLRYGGAFTIALAYAGTGNN------SAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDY--- 610 (963)
T ss_dssp -GGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCH------HHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSC---
T ss_pred -HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCH------HHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCH---
Confidence 256677777766677777777777766433222221 2455566665 46678899999999998876642
Q ss_pred hhcchhhHHHHHhCCcHHHHHH-hhcCCCHHHHHHHHHHHHHhhcCchhHHHHHHcccHHHHHHhhhcCChHHHHHHHHH
Q 007520 508 VQGQRKGRSHLMEDSALEWLIA-NSKTNSASTRRHVELALCHLAQNEDNARDFISRGGAKELVQISIESSREDIRNLAKK 586 (600)
Q Consensus 508 ~q~~~~~r~~l~e~g~l~~Lv~-Ll~s~~~~v~~~Aa~aL~nLa~~~~~~~~lv~~G~l~~Lv~ll~~~~~~~ir~~A~~ 586 (600)
..++.++. ++++.++.+|..|++||..++.+.... .++..|..++++++ ..+|..|.-
T Consensus 611 --------------e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~------~aid~L~~L~~D~d-~~Vrq~Ai~ 669 (963)
T 4ady_A 611 --------------TTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQ------SAIDVLDPLTKDPV-DFVRQAAMI 669 (963)
T ss_dssp --------------SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCH------HHHHHHHHHHTCSS-HHHHHHHHH
T ss_pred --------------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcH------HHHHHHHHHccCCC-HHHHHHHHH
Confidence 35666666 566789999999999999997655541 13445555555543 456666554
Q ss_pred HH
Q 007520 587 TM 588 (600)
Q Consensus 587 ~L 588 (600)
.|
T Consensus 670 AL 671 (963)
T 4ady_A 670 AL 671 (963)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 68
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=97.94 E-value=0.00061 Score=76.84 Aligned_cols=214 Identities=14% Similarity=0.096 Sum_probs=124.7
Q ss_pred hHHHhcccCCCCccccchHHHHhhc-CchhHHHHHhcCCHHHHHHhh--CCCCHHHHHHHHHHHHHhhC-CcchHHHHHH
Q 007520 311 ISKGSSRFGAPMSLQKSNPSRELSG-QRATIAKICDEVGLPKILQLL--TSEDPDVQIHAVKVVANLAA-EDINQEKIVE 386 (600)
Q Consensus 311 i~~Lv~~L~s~~~~~r~~a~~~L~~-~~~~~~~i~e~GgV~~Lv~LL--~s~~~~vr~~Aa~aL~nLa~-~~~~~~~iv~ 386 (600)
+..+..-+.++++..+..|++.++. ..+. ++ ..-++.+..+| .+.++.||..|+.++..+.. +|+... .
T Consensus 113 iN~l~kDl~~~n~~ir~lALr~L~~i~~~e---~~-~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~~~---~ 185 (621)
T 2vgl_A 113 NNAIKNDLASRNPTFMGLALHCIANVGSRE---MA-EAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLVP---M 185 (621)
T ss_dssp HHHHHHHHHSCCHHHHHHHHHHHHHHCCHH---HH-HHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGGCC---C
T ss_pred HHHHHHhcCCCCHHHHHHHHHHhhccCCHH---HH-HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhhcC---c
Confidence 4445556666777777777777332 2222 22 23467778888 88999999999999999887 443221 2
Q ss_pred cCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcCCccHHHHHHhCchhhhH----hhhcc--CC----------CHHHHHH
Q 007520 387 EGGLDALLLLLRTSQNTTILRVASGAIANLAMNEMNQGLIMSRGGGQLLA----KTASK--TD----------DPQTLRM 450 (600)
Q Consensus 387 ~G~I~~Lv~lL~~~~~~~v~~~Al~aL~NLa~~~~~r~~I~~~G~I~~Lv----~lL~~--~~----------~~~v~~~ 450 (600)
.+.++.+..+|. ++++.+...|+.+|..++.... ..+ ...+|.++ .++.. .+ +|-.+..
T Consensus 186 ~~~~~~l~~lL~-d~d~~V~~~a~~~l~~i~~~~~--~~~--~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~ 260 (621)
T 2vgl_A 186 GDWTSRVVHLLN-DQHLGVVTAATSLITTLAQKNP--EEF--KTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVK 260 (621)
T ss_dssp CSCHHHHHHHTT-CSCHHHHHHHHHHHHHHHHHCH--HHH--TTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHH
T ss_pred hhHHHHHHHHhC-CCCccHHHHHHHHHHHHHHhCh--HHH--HHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHH
Confidence 467888999996 7899999999999999987521 111 11233333 33211 11 4666667
Q ss_pred HHHHHHHHhC--CchhHHHHHHcChHHHHHHHHc---------CCCH--HHHHHHHHHHHHhhcCCchhhhhcchhhHHH
Q 007520 451 VAGALANLCG--NEKLHTMLEEDGAIKALLAMVR---------SGNI--DVIAQVARGLANFAKCESRAIVQGQRKGRSH 517 (600)
Q Consensus 451 Aa~aL~nLa~--~~e~r~~i~~~G~i~~Lv~lL~---------s~~~--~v~~~A~~aL~nLa~~~~~~~~q~~~~~r~~ 517 (600)
.+.+|..++. +++.+..+.+ .+..++..+. +.+. .|...|+.++..+.. ++.
T Consensus 261 il~ll~~~~~~~d~~~~~~l~~--~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~-~~~------------ 325 (621)
T 2vgl_A 261 LLRLLQCYPPPEDPAVRGRLTE--CLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDS-EPN------------ 325 (621)
T ss_dssp HHHHGGGSSSCSSHHHHHHHHH--HHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHCC-CHH------------
T ss_pred HHHHHHHhCCCCCHHHHHHHHH--HHHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcCC-cHH------------
Confidence 7777777764 2344443332 2333332221 1122 566666666666642 111
Q ss_pred HHhCCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcC
Q 007520 518 LMEDSALEWLIANSKTNSASTRRHVELALCHLAQN 552 (600)
Q Consensus 518 l~e~g~l~~Lv~Ll~s~~~~v~~~Aa~aL~nLa~~ 552 (600)
+. ..++..|..++.+.++.++..|..+|..++..
T Consensus 326 ~~-~~~~~~L~~~L~~~~~niry~aL~~l~~l~~~ 359 (621)
T 2vgl_A 326 LL-VRACNQLGQFLQHRETNLRYLALESMCTLASS 359 (621)
T ss_dssp HH-HHHHHHHHHHSSCSCHHHHHHHHHHHHHHTTC
T ss_pred HH-HHHHHHHHHHhcCCCcchHHHHHHHHHHHHhc
Confidence 10 12455555666666666666666666666543
No 69
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=97.93 E-value=0.00014 Score=78.47 Aligned_cols=209 Identities=11% Similarity=0.110 Sum_probs=145.3
Q ss_pred hhcCchhHHHHHhcCC--HHHHHHhhC----CC-------------CHHHHHHHHHHHHHhhCCcchHHHHHHcCCH--H
Q 007520 333 LSGQRATIAKICDEVG--LPKILQLLT----SE-------------DPDVQIHAVKVVANLAAEDINQEKIVEEGGL--D 391 (600)
Q Consensus 333 L~~~~~~~~~i~e~Gg--V~~Lv~LL~----s~-------------~~~vr~~Aa~aL~nLa~~~~~~~~iv~~G~I--~ 391 (600)
+...+..+..+...+| +++++.++. +. ...++..++-++|-|+.++.....+...+.+ +
T Consensus 195 Ll~~~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~iWlLSF~~~~~~~l~~~~i~~~~ 274 (480)
T 1ho8_A 195 LAVIPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLLLIWLLTFNPVFANELVQKYLSDFL 274 (480)
T ss_dssp HHTSHHHHHHHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHH
T ss_pred HhcchhHHHHHHHcccchhHHHHHHHHHhhccccccccccccCCCccHHHHHHHHHHHHHHHcCHHHHHHHHhcchHHHH
Confidence 4456777777776655 566654332 11 2456788999999999998888788777643 6
Q ss_pred HHHHHHccCCCHHHHHHHHHHHHHhhcCC-ccHH-----HHHHhCchhhhHhhhcc--CCCHHHHHHHHHHHH-------
Q 007520 392 ALLLLLRTSQNTTILRVASGAIANLAMNE-MNQG-----LIMSRGGGQLLAKTASK--TDDPQTLRMVAGALA------- 456 (600)
Q Consensus 392 ~Lv~lL~~~~~~~v~~~Al~aL~NLa~~~-~~r~-----~I~~~G~I~~Lv~lL~~--~~~~~v~~~Aa~aL~------- 456 (600)
.|+.+++.+..+.+.+.++.+|.||.... .... .++-.++ ++++..|.. ..|+++....-.+.-
T Consensus 275 ~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~~~~~~~~~-l~~l~~L~~rk~~Dedl~edl~~L~e~L~~~~~ 353 (480)
T 1ho8_A 275 DLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNA-LPTVQSLSERKYSDEELRQDISNLKEILENEYQ 353 (480)
T ss_dssp HHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCH-HHHHHHHHSSCCSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHHHHHHHccc-hHHHHHHhhCCCCcHHHHHHHHHHHHHHHHHHH
Confidence 77888888888999999999999999763 2222 2222344 555555533 367666554333222
Q ss_pred HHhCCchhHHHHH------------------------H--cChHHHHHHHHcC----------CCHHHHHHHHHHHHHhh
Q 007520 457 NLCGNEKLHTMLE------------------------E--DGAIKALLAMVRS----------GNIDVIAQVARGLANFA 500 (600)
Q Consensus 457 nLa~~~e~r~~i~------------------------~--~G~i~~Lv~lL~s----------~~~~v~~~A~~aL~nLa 500 (600)
.|+..++++..+. + -..+..|+.+|.+ .|+.+..-||.=++.++
T Consensus 354 ~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e~~~~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefv 433 (480)
T 1ho8_A 354 ELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVV 433 (480)
T ss_dssp TCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHH
T ss_pred hcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHhcchHHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHH
Confidence 2222222322221 1 1256789999863 46788889999999999
Q ss_pred cCCchhhhhcchhhHHHHHhCCcHHHHHHhhcCCCHHHHHHHHHHHHHhh
Q 007520 501 KCESRAIVQGQRKGRSHLMEDSALEWLIANSKTNSASTRRHVELALCHLA 550 (600)
Q Consensus 501 ~~~~~~~~q~~~~~r~~l~e~g~l~~Lv~Ll~s~~~~v~~~Aa~aL~nLa 550 (600)
.+- |.+|..+-+.|+-+.++.++.++|+.|+..|..|+..+-
T Consensus 434 r~~--------P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~avQklm 475 (480)
T 1ho8_A 434 ELL--------PESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAII 475 (480)
T ss_dssp HHC--------TTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHH
T ss_pred HHC--------cchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 774 668888988999999999999999999999999998763
No 70
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=97.91 E-value=0.00041 Score=79.92 Aligned_cols=263 Identities=8% Similarity=0.030 Sum_probs=159.7
Q ss_pred cCchHHHhcccCCC--CccccchHHHHhhc----CchhHH-HHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhC-Ccc
Q 007520 308 KDYISKGSSRFGAP--MSLQKSNPSRELSG----QRATIA-KICDEVGLPKILQLLTSEDPDVQIHAVKVVANLAA-EDI 379 (600)
Q Consensus 308 ~g~i~~Lv~~L~s~--~~~~r~~a~~~L~~----~~~~~~-~i~e~GgV~~Lv~LL~s~~~~vr~~Aa~aL~nLa~-~~~ 379 (600)
...++.+...+.+. ....+..++.++.. -..... ......-++.|...+.++++.+|..|+.+|..++. .+.
T Consensus 178 ~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~~~~ 257 (861)
T 2bpt_A 178 NNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYT 257 (861)
T ss_dssp HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 44566667777766 55667766665211 111100 00001125556677788899999999999999886 332
Q ss_pred -hHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcCCc------------------cHHHHHHhCchhhhHhhhc
Q 007520 380 -NQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMNEM------------------NQGLIMSRGGGQLLAKTAS 440 (600)
Q Consensus 380 -~~~~iv~~G~I~~Lv~lL~~~~~~~v~~~Al~aL~NLa~~~~------------------~r~~I~~~G~I~~Lv~lL~ 440 (600)
....+. ...++.++..+. +.+..++..|+.++..++.... .-..++ ...+|.++..+.
T Consensus 258 ~~~~~l~-~~l~~~~~~~~~-~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~il~~ll~~l~ 334 (861)
T 2bpt_A 258 FMKPYME-QALYALTIATMK-SPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSI-KDVVPNLLNLLT 334 (861)
T ss_dssp GCHHHHH-HTHHHHHHHHTT-CSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHH-HHHHHHHHHHTT
T ss_pred HHHHHHH-HHHHHHHHHHHc-CCcHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHHHHH-HHHHHHHHHHHH
Confidence 232222 135666666666 6688899999999998876521 111122 346777777775
Q ss_pred cC------CCHHHHHHHHHHHHHHhCCchhHHHHHHcChHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchhhhhcchhh
Q 007520 441 KT------DDPQTLRMVAGALANLCGNEKLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFAKCESRAIVQGQRKG 514 (600)
Q Consensus 441 ~~------~~~~v~~~Aa~aL~nLa~~~e~r~~i~~~G~i~~Lv~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~q~~~~~ 514 (600)
.. ++..++..++.+|..++..-. ..+. ...++.+...+.+.+..++..|+.+|+.++..... ...
T Consensus 335 ~~~~d~~d~~~~~r~~a~~~L~~l~~~~~--~~~~-~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~------~~~ 405 (861)
T 2bpt_A 335 RQNEDPEDDDWNVSMSAGACLQLFAQNCG--NHIL-EPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDK------VQR 405 (861)
T ss_dssp CCCCC-CCCCCHHHHHHHHHHHHHHHHHG--GGGH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCH------HHH
T ss_pred hcccccccccCcHHHHHHHHHHHHHHHcc--HhHH-HHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCH------HHH
Confidence 32 234688888889988874211 0001 13455666667788899999999999999855310 011
Q ss_pred HHHHHhCCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCchhH---HHHHHcccHHHHHHhhhcCChHHHHHHHHHH
Q 007520 515 RSHLMEDSALEWLIANSKTNSASTRRHVELALCHLAQNEDNA---RDFISRGGAKELVQISIESSREDIRNLAKKT 587 (600)
Q Consensus 515 r~~l~e~g~l~~Lv~Ll~s~~~~v~~~Aa~aL~nLa~~~~~~---~~lv~~G~l~~Lv~ll~~~~~~~ir~~A~~~ 587 (600)
...+ ...++.|+..+.++++.++..++++|..++..-... ... -...++.|+..+.+. +.++..|..+
T Consensus 406 ~~~l--~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~-~~~~l~~l~~~l~~~--~~v~~~a~~a 476 (861)
T 2bpt_A 406 TYYV--HQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQH-LPGVVQACLIGLQDH--PKVATNCSWT 476 (861)
T ss_dssp HHHH--HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTT-HHHHHHHHHHHHTSC--HHHHHHHHHH
T ss_pred HHHH--HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHH-HHHHHHHHHHHhccC--hHHHHHHHHH
Confidence 1111 247888999999999999999999999987431100 001 123456666666543 4555554433
No 71
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=97.83 E-value=2.7e-05 Score=94.30 Aligned_cols=257 Identities=16% Similarity=0.134 Sum_probs=162.6
Q ss_pred chHHHhcccCCCCccccchHHHHhh-c-CchhH--HHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCcchHHHHH
Q 007520 310 YISKGSSRFGAPMSLQKSNPSRELS-G-QRATI--AKICDEVGLPKILQLLTSEDPDVQIHAVKVVANLAAEDINQEKIV 385 (600)
Q Consensus 310 ~i~~Lv~~L~s~~~~~r~~a~~~L~-~-~~~~~--~~i~e~GgV~~Lv~LL~s~~~~vr~~Aa~aL~nLa~~~~~~~~iv 385 (600)
.++.++..+.++.+..|..|...+. . ..... ..-.....++.|+..|.+.++.+|..|+.+|.+++..-.. ...
T Consensus 7 ~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~--~~~ 84 (1230)
T 1u6g_C 7 HISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKE--YQV 84 (1230)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCH--HHH
T ss_pred HHHHHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCH--HHH
Confidence 3667777777888888877765421 1 11000 0000112367788888899999999999999999863221 111
Q ss_pred HcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcC-Ccc------HHHHHHhCchhhhHhhhccCCCHHHHHHHHHHHHHH
Q 007520 386 EEGGLDALLLLLRTSQNTTILRVASGAIANLAMN-EMN------QGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANL 458 (600)
Q Consensus 386 ~~G~I~~Lv~lL~~~~~~~v~~~Al~aL~NLa~~-~~~------r~~I~~~G~I~~Lv~lL~~~~~~~v~~~Aa~aL~nL 458 (600)
. ..++.|+..+. ++++.++..|+.+|..++.. ... ... .....+|.|...+.+++++.++..|+.+|..+
T Consensus 85 ~-~i~~~Ll~~l~-d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~-~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~ 161 (1230)
T 1u6g_C 85 E-TIVDTLCTNML-SDKEQLRDISSIGLKTVIGELPPASSGSALAAN-VCKKITGRLTSAIAKQEDVSVQLEALDIMADM 161 (1230)
T ss_dssp H-HHHHHHHHHTT-CSSSHHHHHHHHHHHHHHHHCC-----CCTHHH-HHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHH
T ss_pred H-HHHHHHHHHhc-CCcHHHHHHHHHHHHHHHHhCCCcccccchHHH-HHHHHHHHHHHHHcCCCchHHHHHHHHHHHHH
Confidence 2 14667777776 55667899999999999865 211 111 22347888888885456788999999999998
Q ss_pred hCC--chhHHHHHHcChHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchhhhhcchhhHHHHHhCCcHHHHHHhhcCC-C
Q 007520 459 CGN--EKLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSKTN-S 535 (600)
Q Consensus 459 a~~--~e~r~~i~~~G~i~~Lv~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~q~~~~~r~~l~e~g~l~~Lv~Ll~s~-~ 535 (600)
+.. +.....+ ...++.++..+.++++.++..|+.+|..++...+. .+ -...++.++..+... +
T Consensus 162 ~~~~~~~l~~~~--~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~-----------~~-~~~~l~~l~~~L~~~~~ 227 (1230)
T 1u6g_C 162 LSRQGGLLVNFH--PSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGN-----------IV-FVDLIEHLLSELSKNDS 227 (1230)
T ss_dssp HHHTCSSCTTTH--HHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC----------------CTTHHHHHHHHHHHTCS
T ss_pred HHHhHhHHHHHH--HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCH-----------HH-HHHHHHHHHHHhccCCc
Confidence 731 2111111 34667777778888999999999999999865321 12 134678888766543 3
Q ss_pred HHHHHHHHHHHHHhhcCchhHHHHH--HcccHHHHHHhhhcCChHHHHHHHHHHH
Q 007520 536 ASTRRHVELALCHLAQNEDNARDFI--SRGGAKELVQISIESSREDIRNLAKKTM 588 (600)
Q Consensus 536 ~~v~~~Aa~aL~nLa~~~~~~~~lv--~~G~l~~Lv~ll~~~~~~~ir~~A~~~L 588 (600)
..++..++.++..++...+. .+. -...++.++..+.+.+ +.+|..|..++
T Consensus 228 ~~~r~~a~~~l~~l~~~~~~--~~~~~l~~l~~~ll~~l~d~~-~~vR~~a~~~l 279 (1230)
T 1u6g_C 228 MSTTRTYIQCIAAISRQAGH--RIGEYLEKIIPLVVKFCNVDD-DELREYCIQAF 279 (1230)
T ss_dssp SCSCTTHHHHHHHHHHHSSG--GGTTSCTTHHHHHHHHHSSCC-TTTHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHhHH--HHHHHHHHHHHHHHHHhcCCC-HHHHHHHHHHH
Confidence 45677788888887653221 111 1346777777776543 44666655443
No 72
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=97.82 E-value=0.0016 Score=61.50 Aligned_cols=187 Identities=20% Similarity=0.226 Sum_probs=136.0
Q ss_pred hcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhC-CcchHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcC-Ccc
Q 007520 345 DEVGLPKILQLLTSEDPDVQIHAVKVVANLAA-EDINQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMN-EMN 422 (600)
Q Consensus 345 e~GgV~~Lv~LL~s~~~~vr~~Aa~aL~nLa~-~~~~~~~iv~~G~I~~Lv~lL~~~~~~~v~~~Al~aL~NLa~~-~~~ 422 (600)
....+..++.+|..+-..|+.+|..++.+++. .++-...+ +..|+.+++.+....+....+.++..++.. |+
T Consensus 30 d~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl-----~~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe- 103 (253)
T 2db0_A 30 DESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPM-----LKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPE- 103 (253)
T ss_dssp CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHH-----HHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHH-
T ss_pred hHHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHH-----HHHHHHHHhhcccCchHHHHHHHHhHHHHhCHH-
Confidence 34457889999999999999999999999997 55544333 455677777677777777788888888754 33
Q ss_pred HHHHHHhCchhhhHhhhccCCCHHHHHHHHHHHHHHh-CCchhHHHHHHcChHHHHHHHHcCCCHHHHHHHHHHHHHhhc
Q 007520 423 QGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLC-GNEKLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFAK 501 (600)
Q Consensus 423 r~~I~~~G~I~~Lv~lL~~~~~~~v~~~Aa~aL~nLa-~~~e~r~~i~~~G~i~~Lv~lL~s~~~~v~~~A~~aL~nLa~ 501 (600)
+++. .+|.|..-.. -++++++.....+|..++ .+|..-. +++.-+..++.++|..=+..|+..+..+..
T Consensus 104 ---~v~~-vVp~lfanyr-igd~kikIn~~yaLeeIaranP~l~~-----~v~rdi~smltskd~~Dkl~aLnFi~alGe 173 (253)
T 2db0_A 104 ---LVKS-MIPVLFANYR-IGDEKTKINVSYALEEIAKANPMLMA-----SIVRDFMSMLSSKNREDKLTALNFIEAMGE 173 (253)
T ss_dssp ---HHHH-HHHHHHHHSC-CCSHHHHHHHHHHHHHHHHHCHHHHH-----HHHHHHHHHTSCSSHHHHHHHHHHHHTCCT
T ss_pred ---HHHh-hHHHHHHHHh-cCCccceecHHHHHHHHHHhChHHHH-----HHHHHHHHHhcCCChHHHHHHHHHHHHHhc
Confidence 2222 4566655553 368999999999999886 4565444 456678889988887667777777777664
Q ss_pred CCchhhhhcchhhHHHHHhCCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCchhHHHHH
Q 007520 502 CESRAIVQGQRKGRSHLMEDSALEWLIANSKTNSASTRRHVELALCHLAQNEDNARDFI 560 (600)
Q Consensus 502 ~~~~~~~q~~~~~r~~l~e~g~l~~Lv~Ll~s~~~~v~~~Aa~aL~nLa~~~~~~~~lv 560 (600)
..+... .-.+|.|..+++++|.-|+..|+.+|.+++.-.+..+.++
T Consensus 174 n~~~yv-------------~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npklRkii 219 (253)
T 2db0_A 174 NSFKYV-------------NPFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRKVV 219 (253)
T ss_dssp TTHHHH-------------GGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred cCcccc-------------CcchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHHHHHHH
Confidence 432222 3478999999999999999999999999987554444443
No 73
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=97.69 E-value=0.00044 Score=68.89 Aligned_cols=190 Identities=11% Similarity=0.093 Sum_probs=130.0
Q ss_pred HHHhhCCCCHHHHHHHHHHHHH-hhC-CcchH---HHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcC-C--ccH
Q 007520 352 ILQLLTSEDPDVQIHAVKVVAN-LAA-EDINQ---EKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMN-E--MNQ 423 (600)
Q Consensus 352 Lv~LL~s~~~~vr~~Aa~aL~n-La~-~~~~~---~~iv~~G~I~~Lv~lL~~~~~~~v~~~Al~aL~NLa~~-~--~~r 423 (600)
+...+.+.+..-|..|+..|.. ++. ++... ..+. ..+..|...+..+.+..++..|+.+|..|+.. . ...
T Consensus 21 f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~--~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~ 98 (249)
T 2qk1_A 21 FQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYS--NLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFS 98 (249)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCH--HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSC
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHH--HHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccccccc
Confidence 3466788999999999999999 864 33211 0111 23667777884478888999999999999854 2 222
Q ss_pred HHHHHhCchhhhHhhhccCCCHHHHHHHHHHHHHHhC--CchhHHHHHHcChHHHHHHHHcCCCHHHHHHHHHHHHHhhc
Q 007520 424 GLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLCG--NEKLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFAK 501 (600)
Q Consensus 424 ~~I~~~G~I~~Lv~lL~~~~~~~v~~~Aa~aL~nLa~--~~e~r~~i~~~G~i~~Lv~lL~s~~~~v~~~A~~aL~nLa~ 501 (600)
...... .+|.++..+.+ ..+.++..+..+|..++. ++.. ..-.=...++.|+..|.+.++.++..++.+|..++.
T Consensus 99 ~~y~~~-llp~ll~~l~d-kk~~V~~aa~~al~~i~~~~~~~~-~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~ 175 (249)
T 2qk1_A 99 KDYVSL-VFTPLLDRTKE-KKPSVIEAIRKALLTICKYYDPLA-SSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMK 175 (249)
T ss_dssp HHHHHH-HHHHHHHGGGC-CCHHHHHHHHHHHHHHHHHSCTTC-TTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-HHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHccccc-cCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHH
Confidence 122222 68888888854 567888888888888763 2211 000001367788888998999999999999999985
Q ss_pred CCchhhhhcchhhHHHHHhCCcHHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 007520 502 CESRAIVQGQRKGRSHLMEDSALEWLIANSKTNSASTRRHVELALCHLAQ 551 (600)
Q Consensus 502 ~~~~~~~q~~~~~r~~l~e~g~l~~Lv~Ll~s~~~~v~~~Aa~aL~nLa~ 551 (600)
..+.. +..=...+....+|.|..++.+.++.||..|..++..++.
T Consensus 176 ~~~~~-----~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~ 220 (249)
T 2qk1_A 176 EEKDG-----YSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIK 220 (249)
T ss_dssp HCCSC-----SHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred HcCCc-----chhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 43210 0000011225689999999999999999999999998853
No 74
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=97.64 E-value=0.0032 Score=64.93 Aligned_cols=189 Identities=10% Similarity=0.038 Sum_probs=137.0
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHH-hhCCcchHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcCCccHHHHH
Q 007520 349 LPKILQLLTSEDPDVQIHAVKVVAN-LAAEDINQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMNEMNQGLIM 427 (600)
Q Consensus 349 V~~Lv~LL~s~~~~vr~~Aa~aL~n-La~~~~~~~~iv~~G~I~~Lv~lL~~~~~~~v~~~Al~aL~NLa~~~~~r~~I~ 427 (600)
+..++.-|.+.+...++.+..-|.. ++.+......|+..||+..|+.+.. ..+..++..++.||.+|-.+.+.-..++
T Consensus 120 a~~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~-~~~gN~q~Y~L~AL~~LM~~v~Gm~gvv 198 (339)
T 3dad_A 120 VNAILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGA-AADHNYQSYILRALGQLMLFVDGMLGVV 198 (339)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHT-TSCHHHHHHHHHHHHHHTTSHHHHHHHH
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHH-hcChHHHHHHHHHHHHHHhccccccchh
Confidence 4556666667778888888888888 6668889999999999999999998 4588899999999999999888887777
Q ss_pred H-hCchhhhHhhhccCCCHHHHHHHHHHHHHHhCCc-hhHHHHHHc--------C--hHHHHHHHHc---CCCHHHHHHH
Q 007520 428 S-RGGGQLLAKTASKTDDPQTLRMVAGALANLCGNE-KLHTMLEED--------G--AIKALLAMVR---SGNIDVIAQV 492 (600)
Q Consensus 428 ~-~G~I~~Lv~lL~~~~~~~v~~~Aa~aL~nLa~~~-e~r~~i~~~--------G--~i~~Lv~lL~---s~~~~v~~~A 492 (600)
. ...|..|..++. +.+..+.+.|+..|..++.+. .+...+... | -+..|+.+|. +.+..++..|
T Consensus 199 s~~~fI~~lyslv~-s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~a 277 (339)
T 3dad_A 199 AHSDTIQWLYTLCA-SLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYT 277 (339)
T ss_dssp HCHHHHHHHHHGGG-CSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHH
T ss_pred CCHHHHHHHHHHHc-CccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHH
Confidence 5 668888888886 577899999999999998553 344433321 1 2567899997 7889999998
Q ss_pred HHHHHHhhcCCchhhhhcchhhHHHHHhCCcHHHHHHhhcCC--CHHHHHH
Q 007520 493 ARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSKTN--SASTRRH 541 (600)
Q Consensus 493 ~~aL~nLa~~~~~~~~q~~~~~r~~l~e~g~l~~Lv~Ll~s~--~~~v~~~ 541 (600)
...+-.+-...|.... ..+....+.+.|.-..+.+++... ++.++..
T Consensus 278 mtLIN~lL~~apd~d~--~~di~d~Le~~gi~~~i~r~l~~~~~~~~l~~Q 326 (339)
T 3dad_A 278 VTLINKTLAALPDQDS--FYDVTDALEQQGMEALVQRHLGTAGTDVDLRTQ 326 (339)
T ss_dssp HHHHHHHHHHCSSHHH--HHHHHHHHHHTTHHHHHHHHHSCTTSCHHHHHH
T ss_pred HHHHHHHHhcCCChhH--HHHHHHHHHHccHHHHHHHHHhccCCCHHHHHH
Confidence 8877766544332110 012333344456556677766654 5555443
No 75
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=97.63 E-value=0.0006 Score=66.85 Aligned_cols=177 Identities=12% Similarity=0.070 Sum_probs=122.3
Q ss_pred HHhcccCCCCccccchHHHH----hhcCchhHHHHHhcCCHHHHHHhhC-CCCHHHHHHHHHHHHHhhC--CcchHHHHH
Q 007520 313 KGSSRFGAPMSLQKSNPSRE----LSGQRATIAKICDEVGLPKILQLLT-SEDPDVQIHAVKVVANLAA--EDINQEKIV 385 (600)
Q Consensus 313 ~Lv~~L~s~~~~~r~~a~~~----L~~~~~~~~~i~e~GgV~~Lv~LL~-s~~~~vr~~Aa~aL~nLa~--~~~~~~~iv 385 (600)
.+...+.+..-..|..++.. +.+++....... ...++.|...+. +.+..++..|+.+|+.|+. .+.... .+
T Consensus 19 ~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~-~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~-~~ 96 (242)
T 2qk2_A 19 DFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEY-GALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSN-YA 96 (242)
T ss_dssp THHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCC-HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHH-HH
T ss_pred HHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCH-HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHH-HH
Confidence 35566666666666666654 222221100000 011555667774 8899999999999999986 222222 22
Q ss_pred HcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcCCccHHHHHHhCchhhhHhhhccCCCHHHHHHHHHHHHHHhCC--ch
Q 007520 386 EEGGLDALLLLLRTSQNTTILRVASGAIANLAMNEMNQGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLCGN--EK 463 (600)
Q Consensus 386 ~~G~I~~Lv~lL~~~~~~~v~~~Al~aL~NLa~~~~~r~~I~~~G~I~~Lv~lL~~~~~~~v~~~Aa~aL~nLa~~--~e 463 (600)
.. .+|+|+..+. +++..++..|..+|.+++..... ...++.|...|. +.++.++..++.+|..+... ++
T Consensus 97 ~~-ilp~ll~~l~-d~~~~vr~~a~~aL~~~~~~~~~------~~ll~~l~~~l~-~~~~~vr~~~l~~l~~~l~~~~~~ 167 (242)
T 2qk2_A 97 SA-CVPSLLEKFK-EKKPNVVTALREAIDAIYASTSL------EAQQESIVESLS-NKNPSVKSETALFIARALTRTQPT 167 (242)
T ss_dssp HH-HHHHHHHGGG-CCCHHHHHHHHHHHHHHHTTSCH------HHHHHHHHHHTT-CSCHHHHHHHHHHHHHHHTTCCGG
T ss_pred HH-HHHHHHHHHc-CCCHHHHHHHHHHHHHHHHcCCH------HHHHHHHHHHHc-CCChHHHHHHHHHHHHHHHHcCCC
Confidence 22 6899999998 67889999999999999876432 125677788885 46889999999999996432 33
Q ss_pred --hHHHHHHcChHHHHHHHHcCCCHHHHHHHHHHHHHhhcC
Q 007520 464 --LHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFAKC 502 (600)
Q Consensus 464 --~r~~i~~~G~i~~Lv~lL~s~~~~v~~~A~~aL~nLa~~ 502 (600)
....+ ...++.|+.++.+.++.||..|..+|+.|+..
T Consensus 168 ~~~~~~l--~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~ 206 (242)
T 2qk2_A 168 ALNKKLL--KLLTTSLVKTLNEPDPTVRDSSAEALGTLIKL 206 (242)
T ss_dssp GCCHHHH--HHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHH
T ss_pred CccHHHH--HHHHHHHHHHhcCCChHHHHHHHHHHHHHHHH
Confidence 22222 25889999999999999999999999999853
No 76
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=97.62 E-value=0.057 Score=52.58 Aligned_cols=7 Identities=14% Similarity=0.501 Sum_probs=3.5
Q ss_pred hhhhhhc
Q 007520 8 KLKEEFD 14 (600)
Q Consensus 8 ~~~~~~~ 14 (600)
.||..|+
T Consensus 3 ~~~~~~~ 9 (284)
T 1c1g_A 3 AIKKKMQ 9 (284)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4555544
No 77
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=97.58 E-value=0.00032 Score=84.95 Aligned_cols=208 Identities=16% Similarity=0.162 Sum_probs=138.4
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHhhCCcchH-HHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcCCccHHHHH
Q 007520 349 LPKILQLLTSEDPDVQIHAVKVVANLAAEDINQ-EKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMNEMNQGLIM 427 (600)
Q Consensus 349 V~~Lv~LL~s~~~~vr~~Aa~aL~nLa~~~~~~-~~iv~~G~I~~Lv~lL~~~~~~~v~~~Al~aL~NLa~~~~~r~~I~ 427 (600)
++.|+.-+.++|+++|..|...|.+....+... ..-.....++.|+..|. +++..++..|+.+|.+++..-.. ...
T Consensus 8 l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~-d~~~~vR~~A~~~L~~l~~~~~~--~~~ 84 (1230)
T 1u6g_C 8 ISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLE-DKNGEVQNLAVKCLGPLVSKVKE--YQV 84 (1230)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTT-CSSHHHHHHHHHHHHHHHTTSCH--HHH
T ss_pred HHHHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHhCCH--HHH
Confidence 667777788999999999999998865432110 00011125677888887 77899999999999999875211 111
Q ss_pred HhCchhhhHhhhccCCCHHHHHHHHHHHHHHhCC--ch-----hHHHHHHcChHHHHHHHHc-CCCHHHHHHHHHHHHHh
Q 007520 428 SRGGGQLLAKTASKTDDPQTLRMVAGALANLCGN--EK-----LHTMLEEDGAIKALLAMVR-SGNIDVIAQVARGLANF 499 (600)
Q Consensus 428 ~~G~I~~Lv~lL~~~~~~~v~~~Aa~aL~nLa~~--~e-----~r~~i~~~G~i~~Lv~lL~-s~~~~v~~~A~~aL~nL 499 (600)
...++.|+..+.+ +++.++..|+.+|..++.. +. .... .-...++.|+..+. ++++.++..|+.+|..+
T Consensus 85 -~~i~~~Ll~~l~d-~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~-~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~ 161 (1230)
T 1u6g_C 85 -ETIVDTLCTNMLS-DKEQLRDISSIGLKTVIGELPPASSGSALAAN-VCKKITGRLTSAIAKQEDVSVQLEALDIMADM 161 (1230)
T ss_dssp -HHHHHHHHHHTTC-SSSHHHHHHHHHHHHHHHHCC-----CCTHHH-HHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHhcC-CcHHHHHHHHHHHHHHHHhCCCcccccchHHH-HHHHHHHHHHHHHcCCCchHHHHHHHHHHHHH
Confidence 2256677777744 5668888888899888632 21 1111 12357888999998 58899999999999999
Q ss_pred hcCCchhhhhcchhhHHHHHhCCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCchhHHHHHHcccHHHHHHhhhc
Q 007520 500 AKCESRAIVQGQRKGRSHLMEDSALEWLIANSKTNSASTRRHVELALCHLAQNEDNARDFISRGGAKELVQISIE 574 (600)
Q Consensus 500 a~~~~~~~~q~~~~~r~~l~e~g~l~~Lv~Ll~s~~~~v~~~Aa~aL~nLa~~~~~~~~lv~~G~l~~Lv~ll~~ 574 (600)
+...+.... + . -...++.|+..+.++++.+|..|+.+|..++...+.. + -...++.|+..+..
T Consensus 162 ~~~~~~~l~---~-----~-~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~--~-~~~~l~~l~~~L~~ 224 (1230)
T 1u6g_C 162 LSRQGGLLV---N-----F-HPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNI--V-FVDLIEHLLSELSK 224 (1230)
T ss_dssp HHHTCSSCT---T-----T-HHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC-------CTTHHHHHHHHHHH
T ss_pred HHHhHhHHH---H-----H-HHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHH--H-HHHHHHHHHHHhcc
Confidence 854221110 0 0 1246677777888889999999999999997644321 1 12345666666544
No 78
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=97.58 E-value=0.0018 Score=73.00 Aligned_cols=238 Identities=12% Similarity=0.108 Sum_probs=150.4
Q ss_pred ccCchHHHhccc--CCCCccccchHHHH---hh-cCchhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhC-Ccc
Q 007520 307 TKDYISKGSSRF--GAPMSLQKSNPSRE---LS-GQRATIAKICDEVGLPKILQLLTSEDPDVQIHAVKVVANLAA-EDI 379 (600)
Q Consensus 307 ~~g~i~~Lv~~L--~s~~~~~r~~a~~~---L~-~~~~~~~~i~e~GgV~~Lv~LL~s~~~~vr~~Aa~aL~nLa~-~~~ 379 (600)
....++.+...+ .+..+.+|..|+-+ +. .+++... ..+.++.|..+|.+.++.|+..|+.+|..++. ++.
T Consensus 144 ~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~~~---~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~ 220 (621)
T 2vgl_A 144 AEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLVP---MGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPE 220 (621)
T ss_dssp HHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGGCC---CCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhhcC---chhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChH
Confidence 344566777777 66777777766654 22 2333221 23668889999999999999999999999886 332
Q ss_pred hHHHHHHcCCHHHHHHHHc----c--CC----------CHHHHHHHHHHHHHhhcC--CccHHHHHHhCchhhhHhhhcc
Q 007520 380 NQEKIVEEGGLDALLLLLR----T--SQ----------NTTILRVASGAIANLAMN--EMNQGLIMSRGGGQLLAKTASK 441 (600)
Q Consensus 380 ~~~~iv~~G~I~~Lv~lL~----~--~~----------~~~v~~~Al~aL~NLa~~--~~~r~~I~~~G~I~~Lv~lL~~ 441 (600)
. + ...+|.++..|. . .+ ++-.+-..+..|..++.. +..+..+.+ .++.++..+..
T Consensus 221 ~---~--~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~--~L~~il~~~~~ 293 (621)
T 2vgl_A 221 E---F--KTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTE--CLETILNKAQE 293 (621)
T ss_dssp H---H--TTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHH--HHHHHHHHHHS
T ss_pred H---H--HHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHH--HHHHHHHhhcc
Confidence 1 1 113444444332 1 11 566777777888877754 233333333 33344433221
Q ss_pred CC----------CHHHHHHHHHHHHHHhCCchhHHHHHHcChHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchhhhhcc
Q 007520 442 TD----------DPQTLRMVAGALANLCGNEKLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFAKCESRAIVQGQ 511 (600)
Q Consensus 442 ~~----------~~~v~~~Aa~aL~nLa~~~e~r~~i~~~G~i~~Lv~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~q~~ 511 (600)
++ .+.+.-.++.++..+..+++... .++..|..++.+.++.++..|+.+|..++...|.
T Consensus 294 ~~ks~~l~~~n~~~aVl~ea~~~i~~l~~~~~~~~-----~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~------ 362 (621)
T 2vgl_A 294 PPKSKKVQHSNAKNAVLFEAISLIIHHDSEPNLLV-----RACNQLGQFLQHRETNLRYLALESMCTLASSEFS------ 362 (621)
T ss_dssp CCSCSSHHHHHHHHHHHHHHHHHHHHHCCCHHHHH-----HHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTT------
T ss_pred CcccccccccchHHHHHHHHHHHHHhcCCcHHHHH-----HHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCc------
Confidence 11 23677788888888875554433 3667788888889999999999999999866431
Q ss_pred hhhHHHHHhCCcHHHHHHhhc-CCCHHHHHHHHHHHHHhhcCchhHHHHHHcccHHHHHHhhhcCC
Q 007520 512 RKGRSHLMEDSALEWLIANSK-TNSASTRRHVELALCHLAQNEDNARDFISRGGAKELVQISIESS 576 (600)
Q Consensus 512 ~~~r~~l~e~g~l~~Lv~Ll~-s~~~~v~~~Aa~aL~nLa~~~~~~~~lv~~G~l~~Lv~ll~~~~ 576 (600)
...+ ....+.++..+. ++|..++..+..+|..|+.. .+...+ +..|...+...+
T Consensus 363 ---~~~~--~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~~-~Nv~~I-----v~eL~~yl~~~d 417 (621)
T 2vgl_A 363 ---HEAV--KTHIETVINALKTERDVSVRQRAVDLLYAMCDR-SNAQQI-----VAEMLSYLETAD 417 (621)
T ss_dssp ---HHHH--HTTHHHHHHHHTTCCCHHHHHHHHHHHHHHCCH-HHHHHH-----HHHHHHHHHHCC
T ss_pred ---HHHH--HHHHHHHHHHhccCCCHhHHHHHHHHHHHHcCh-hhHHHH-----HHHHHHHHHhcC
Confidence 0112 235667777777 88999999999999999743 343333 334445554444
No 79
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=97.44 E-value=0.0058 Score=65.91 Aligned_cols=235 Identities=11% Similarity=0.098 Sum_probs=150.1
Q ss_pred HHHhhCC-CCHHHHHHHHHHHHHhhCCcchHHHHHHcCC--HHHHHHHHcc----------------CCCHHHHHHHHHH
Q 007520 352 ILQLLTS-EDPDVQIHAVKVVANLAAEDINQEKIVEEGG--LDALLLLLRT----------------SQNTTILRVASGA 412 (600)
Q Consensus 352 Lv~LL~s-~~~~vr~~Aa~aL~nLa~~~~~~~~iv~~G~--I~~Lv~lL~~----------------~~~~~v~~~Al~a 412 (600)
++..|.. .+...+..++.+|..|...+..|..+.+.++ +++++.++.. ....+++..++.|
T Consensus 172 ~~~~L~~~~~~~~~~i~v~~L~~Ll~~~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~ 251 (480)
T 1ho8_A 172 LINILQNIEQMDTCYVCIRLLQELAVIPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLLL 251 (480)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHHTSHHHHHHHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHHHH
T ss_pred HHHHhccccCCchHHHHHHHHHHHhcchhHHHHHHHcccchhHHHHHHHHHhhccccccccccccCCCccHHHHHHHHHH
Confidence 3444444 3456677899999999999999999986544 6777655441 1135678889999
Q ss_pred HHHhhcCCccHHHHHHhCch--hhhHhhhccCCCHHHHHHHHHHHHHHhCCc-----hhHH-HHHHcChHHHHHHHHc--
Q 007520 413 IANLAMNEMNQGLIMSRGGG--QLLAKTASKTDDPQTLRMVAGALANLCGNE-----KLHT-MLEEDGAIKALLAMVR-- 482 (600)
Q Consensus 413 L~NLa~~~~~r~~I~~~G~I--~~Lv~lL~~~~~~~v~~~Aa~aL~nLa~~~-----e~r~-~i~~~G~i~~Lv~lL~-- 482 (600)
+|-|+.++.....+...+.. +.|+.++..+....+.+-++.+|.||.... .... .++..++ +.++..|.
T Consensus 252 iWlLSF~~~~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~~~~~~~~~-l~~l~~L~~r 330 (480)
T 1ho8_A 252 IWLLTFNPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNA-LPTVQSLSER 330 (480)
T ss_dssp HHHHTTSHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCH-HHHHHHHHSS
T ss_pred HHHHHcCHHHHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHHHHHHHccc-hHHHHHHhhC
Confidence 99999998888888776643 667787877778899999999999998643 2222 2333455 44555553
Q ss_pred -CCCHHHHHHHHHHHHHhhc----------CCchhh------hhcc------hhhHHHHHh--CCcHHHHHHhhcC----
Q 007520 483 -SGNIDVIAQVARGLANFAK----------CESRAI------VQGQ------RKGRSHLME--DSALEWLIANSKT---- 533 (600)
Q Consensus 483 -s~~~~v~~~A~~aL~nLa~----------~~~~~~------~q~~------~~~r~~l~e--~g~l~~Lv~Ll~s---- 533 (600)
-.|+++....-...-.|.. +..+.. +.-| .++-..|.+ ...+..|+.++.+
T Consensus 331 k~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e~~~~llk~L~~iL~~~~~~ 410 (480)
T 1ho8_A 331 KYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRN 410 (480)
T ss_dssp CCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHHT
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHhcchHHHHHHHHHHhhhccc
Confidence 3566654432222222211 000000 0001 111112322 2356788888863
Q ss_pred ------CCHHHHHHHHHHHHHhhc-CchhHHHHHHcccHHHHHHhhhcCChHHHHHHHHHHH
Q 007520 534 ------NSASTRRHVELALCHLAQ-NEDNARDFISRGGAKELVQISIESSREDIRNLAKKTM 588 (600)
Q Consensus 534 ------~~~~v~~~Aa~aL~nLa~-~~~~~~~lv~~G~l~~Lv~ll~~~~~~~ir~~A~~~L 588 (600)
.|+.+..-||.=+..++. +|..+..+-+.||=..+++++.+++ ++++-.|..++
T Consensus 411 ~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~d-~~Vr~~AL~av 471 (480)
T 1ho8_A 411 GDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSD-SRVKYEALKAT 471 (480)
T ss_dssp TCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSS-HHHHHHHHHHH
T ss_pred cccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCC-HHHHHHHHHHH
Confidence 367788888899999976 5666666667899888888988765 66777666444
No 80
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=97.34 E-value=0.0089 Score=58.50 Aligned_cols=180 Identities=13% Similarity=0.075 Sum_probs=134.4
Q ss_pred cCchHHHhcccCCCCccccchHHHH----hhcCchhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhC-CcchHH
Q 007520 308 KDYISKGSSRFGAPMSLQKSNPSRE----LSGQRATIAKICDEVGLPKILQLLTSEDPDVQIHAVKVVANLAA-EDINQE 382 (600)
Q Consensus 308 ~g~i~~Lv~~L~s~~~~~r~~a~~~----L~~~~~~~~~i~e~GgV~~Lv~LL~s~~~~vr~~Aa~aL~nLa~-~~~~~~ 382 (600)
.+.+..|..++....+..+..++.+ +..-+.......=...++.++.++.+.|..+...|..||..|.. .|-...
T Consensus 32 e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~ 111 (265)
T 3b2a_A 32 KRALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSK 111 (265)
T ss_dssp HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHH
T ss_pred hhHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHH
Confidence 3456677778877777777766654 33333333333334569999999999999999999999999887 455565
Q ss_pred HHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcCCccHHHHHHhCchhhhHhhhccCCCHHHHHHHHHHHHHHhCC-
Q 007520 383 KIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMNEMNQGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLCGN- 461 (600)
Q Consensus 383 ~iv~~G~I~~Lv~lL~~~~~~~v~~~Al~aL~NLa~~~~~r~~I~~~G~I~~Lv~lL~~~~~~~v~~~Aa~aL~nLa~~- 461 (600)
.+... +.+|..++. .+++-+...++..|..|......+ +.+..+..++ .+.++.+..++.+++.|+++.
T Consensus 112 ~y~Kl--~~aL~dlik-~~~~il~~eaae~Lgklkv~~~~~------~V~~~l~sLl-~Skd~~vK~agl~~L~eia~~S 181 (265)
T 3b2a_A 112 TFLKA--AKTLVSLLE-SPDDMMRIETIDVLSKLQPLEDSK------LVRTYINELV-VSPDLYTKVAGFCLFLNMLNSS 181 (265)
T ss_dssp HHHHH--HHHHHHHTT-SCCHHHHHHHHHHHHHCCBSCCCH------HHHHHHHHHH-TCSSHHHHHHHHHHHHHHGGGC
T ss_pred HHHHH--HHHHHHHhc-CCCchHHHHHHHHhCcCCcccchH------HHHHHHHHHH-hCCChhHHHHHHHHHHHhhccc
Confidence 66654 688888888 778889999999999983333222 3456777888 679999999999999999853
Q ss_pred --chhHHHHHHcChHHHHHHHHcCCCHHHHHHHHHHHHHhhcC
Q 007520 462 --EKLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFAKC 502 (600)
Q Consensus 462 --~e~r~~i~~~G~i~~Lv~lL~s~~~~v~~~A~~aL~nLa~~ 502 (600)
+++-. +.+.-+-.++.+.|+.++..|+.+|-.+...
T Consensus 182 ~D~~i~~-----~I~~eI~elL~~eD~~l~e~aLd~Le~ils~ 219 (265)
T 3b2a_A 182 ADSGHLT-----LILDEIPSLLQNDNEFIVELALDVLEKALSF 219 (265)
T ss_dssp SSCCCGG-----GTTTTHHHHHTCSCHHHHHHHHHHHHHHTTS
T ss_pred CCHHHHH-----HHHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 33332 3455577889999999999999999999865
No 81
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=97.31 E-value=0.0075 Score=70.34 Aligned_cols=137 Identities=14% Similarity=0.091 Sum_probs=96.3
Q ss_pred HHHHHHHHccCCCHHHHHHHHHHHHHhhcCCccHHHHHHhCchhhhHhhhccCCCHHHHHHHHHHHHHHhCCchhHHHHH
Q 007520 390 LDALLLLLRTSQNTTILRVASGAIANLAMNEMNQGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLCGNEKLHTMLE 469 (600)
Q Consensus 390 I~~Lv~lL~~~~~~~v~~~Al~aL~NLa~~~~~r~~I~~~G~I~~Lv~lL~~~~~~~v~~~Aa~aL~nLa~~~e~r~~i~ 469 (600)
|+.|+..+.++.+..+++.|..+|..++..++ ..++.++.+|..+.++.++..|+.+|+.++......
T Consensus 579 Iq~LL~~~~~d~~d~VRraAViaLGlI~~g~~--------e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~---- 646 (963)
T 4ady_A 579 VKRLLHVAVSDSNDDVRRAAVIALGFVLLRDY--------TTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQ---- 646 (963)
T ss_dssp HHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSC--------SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCH----
T ss_pred HHHHHHHhccCCcHHHHHHHHHHHHhhccCCH--------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcH----
Confidence 56667766667777888888888888776532 256777777777789999999999999997543322
Q ss_pred HcChHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchhhhhcchhhHHHHHhCCcHHHHHHhhcC--CCHHHHHHHHHHHH
Q 007520 470 EDGAIKALLAMVRSGNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSKT--NSASTRRHVELALC 547 (600)
Q Consensus 470 ~~G~i~~Lv~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~q~~~~~r~~l~e~g~l~~Lv~Ll~s--~~~~v~~~Aa~aL~ 547 (600)
.++..|..++++.+..|+..|+.+|+.+....+++... . + .+.+..|.....+ .++..+..+..|..
T Consensus 647 --~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gtnna~~~---r----v--a~~l~~L~~~~~dk~~d~~~~fga~iAqG 715 (963)
T 4ady_A 647 --SAIDVLDPLTKDPVDFVRQAAMIALSMILIQQTEKLNP---Q----V--ADINKNFLSVITNKHQEGLAKFGACVAQG 715 (963)
T ss_dssp --HHHHHHHHHHTCSSHHHHHHHHHHHHHHSTTCCTTTCT---T----H--HHHHHHHHHHHHCSSSCHHHHHHHHHHHH
T ss_pred --HHHHHHHHHccCCCHHHHHHHHHHHHHHhcCCccccch---H----H--HHHHHHHHHHHhcccccHHHHHHHHHHHH
Confidence 25667888889999999999999999998765443110 0 0 1233345555543 46777877777776
Q ss_pred Hh
Q 007520 548 HL 549 (600)
Q Consensus 548 nL 549 (600)
-+
T Consensus 716 ll 717 (963)
T 4ady_A 716 IM 717 (963)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 82
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=97.24 E-value=0.00042 Score=72.67 Aligned_cols=240 Identities=15% Similarity=0.133 Sum_probs=124.2
Q ss_pred chHHHhcccCCCCccccchHHHHhh-c-CchhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCcchHHHHHHc
Q 007520 310 YISKGSSRFGAPMSLQKSNPSRELS-G-QRATIAKICDEVGLPKILQLLTSEDPDVQIHAVKVVANLAAEDINQEKIVEE 387 (600)
Q Consensus 310 ~i~~Lv~~L~s~~~~~r~~a~~~L~-~-~~~~~~~i~e~GgV~~Lv~LL~s~~~~vr~~Aa~aL~nLa~~~~~~~~iv~~ 387 (600)
++..+..-+.++++-.|..|++.++ . .++... ...+.+-..|.+.++.||..|+.+...|....+. +++
T Consensus 105 v~Nsl~kDl~~~N~~iR~lALRtL~~I~~~~m~~-----~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe---~v~- 175 (355)
T 3tjz_B 105 VTSSLTKDMTGKEDSYRGPAVRALCQITDSTMLQ-----AIERYMKQAIVDKVPSVSSSALVSSLHLLKCSFD---VVK- 175 (355)
T ss_dssp GHHHHHHHHHSSCHHHHHHHHHHHHHHCCTTTHH-----HHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHH---HHH-
T ss_pred HHHHHHhhcCCCcHhHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHH---HHH-
Confidence 4566677777788888888888733 2 222222 1245566788899999999999999988763222 233
Q ss_pred CCHHHHHHHHccCCCHHHHHHHHHHHHHhhcCCccHHHHHHhCchhhhHhhhccC--CCHHHHHHHHHHHHHHhCCchhH
Q 007520 388 GGLDALLLLLRTSQNTTILRVASGAIANLAMNEMNQGLIMSRGGGQLLAKTASKT--DDPQTLRMVAGALANLCGNEKLH 465 (600)
Q Consensus 388 G~I~~Lv~lL~~~~~~~v~~~Al~aL~NLa~~~~~r~~I~~~G~I~~Lv~lL~~~--~~~~v~~~Aa~aL~nLa~~~e~r 465 (600)
+.+..+-.++. +.++.+..+|+.+|..+..++. . ++..|+..+..+ .+|-.+...+..++.++..++-.
T Consensus 176 ~~~~~l~~ll~-d~n~~V~~~Al~lL~ei~~~d~--~------a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~ 246 (355)
T 3tjz_B 176 RWVNEAQEAAS-SDNIMVQYHALGLLYHVRKNDR--L------AVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGS 246 (355)
T ss_dssp TTHHHHHHHTT-CSSHHHHHHHHHHHHHHHTTCH--H------HHHHHHHHHHSSCCSCHHHHHHHHHHHTCC-------
T ss_pred HHHHHHHHHhc-CCCccHHHHHHHHHHHHHhhch--H------HHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccchh
Confidence 57888888887 7788899999999999987641 1 334445554332 13433333333333333222000
Q ss_pred HHHHHcChHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchhhhhcchhhHHHHHhCCcHHHHHHhhcCCCHHHHHHHHHH
Q 007520 466 TMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSKTNSASTRRHVELA 545 (600)
Q Consensus 466 ~~i~~~G~i~~Lv~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~q~~~~~r~~l~e~g~l~~Lv~Ll~s~~~~v~~~Aa~a 545 (600)
.....++.+..+|++.++.|...|++++..+....+. + -..++..|..++.+.++.++..|...
T Consensus 247 ---~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~~~~~------------~-~~~a~~~L~~fLss~d~niryvaLr~ 310 (355)
T 3tjz_B 247 ---RDSPLFDFIESCLRNKHEMVVYEAASAIVNLPGCSAK------------E-LAPAVSVLQLFCSSPKAALRYAAVRT 310 (355)
T ss_dssp -------------CCCCCSSHHHHHHHHHHHTC------------------------CCCTHHHHHHSSSSSSHHHHHHC
T ss_pred ---hHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCHH------------H-HHHHHHHHHHHHcCCCchHHHHHHHH
Confidence 1234556677778899999999999999998643211 1 13456777788888999999999998
Q ss_pred HHHhhcCchhHHHHHHcccHHHHHHhhhcCChHHHHHHHHHHH
Q 007520 546 LCHLAQNEDNARDFISRGGAKELVQISIESSREDIRNLAKKTM 588 (600)
Q Consensus 546 L~nLa~~~~~~~~lv~~G~l~~Lv~ll~~~~~~~ir~~A~~~L 588 (600)
|..++...+.. +. ..-..+.+++.++++ .|+..|.-+|
T Consensus 311 L~~l~~~~P~~---v~-~~n~~ie~li~d~n~-sI~t~Aittl 348 (355)
T 3tjz_B 311 LNKVAMKHPSA---VT-ACNLDLENLVTDANR-SIATLAITTL 348 (355)
T ss_dssp C------------------------------------------
T ss_pred HHHHHHHCcHH---HH-HHHHHHHHHccCCcH-hHHHHHHHHh
Confidence 88886643321 21 134556777777654 4666666443
No 83
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=97.24 E-value=0.017 Score=59.59 Aligned_cols=183 Identities=13% Similarity=0.002 Sum_probs=128.0
Q ss_pred HHHHHHHccCCCHHHHHHHHHHHHH-hhcCCccHHHHHHhCchhhhHhhhccCCCHHHHHHHHHHHHHHhCCchhHHHHH
Q 007520 391 DALLLLLRTSQNTTILRVASGAIAN-LAMNEMNQGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLCGNEKLHTMLE 469 (600)
Q Consensus 391 ~~Lv~lL~~~~~~~v~~~Al~aL~N-La~~~~~r~~I~~~G~I~~Lv~lL~~~~~~~v~~~Aa~aL~nLa~~~e~r~~i~ 469 (600)
..++.-|.+ .+...++.++.-|.. +..+.+....++..||+..|+.+... .+..++..++.++.+|....++..-++
T Consensus 121 ~~iiekL~~-~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~-~~gN~q~Y~L~AL~~LM~~v~Gm~gvv 198 (339)
T 3dad_A 121 NAILEKLYS-SSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAA-ADHNYQSYILRALGQLMLFVDGMLGVV 198 (339)
T ss_dssp HHHHHHHHH-CCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTT-SCHHHHHHHHHHHHHHTTSHHHHHHHH
T ss_pred HHHHHHHhc-CCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHh-cChHHHHHHHHHHHHHHhccccccchh
Confidence 334455553 345556778888888 66678999999999999999999955 688999999999999998887776666
Q ss_pred H-cChHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchhhhhcchhhHHHHHhCC--cHHHHHHhhc---CCCHHHHHHHH
Q 007520 470 E-DGAIKALLAMVRSGNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLMEDS--ALEWLIANSK---TNSASTRRHVE 543 (600)
Q Consensus 470 ~-~G~i~~Lv~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~q~~~~~r~~l~e~g--~l~~Lv~Ll~---s~~~~v~~~Aa 543 (600)
. ...|..++.++.+.+..|...|+.+|-.++..++.....-....+..-...| -++.|+.++. +.|..++.+|.
T Consensus 199 s~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~am 278 (339)
T 3dad_A 199 AHSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTV 278 (339)
T ss_dssp HCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHH
Confidence 4 4688999999999999999999999999987653211000001111111112 3678888887 78999999988
Q ss_pred HHHHHhhc---CchhHHHHH----HcccHHHHHHhhhcC
Q 007520 544 LALCHLAQ---NEDNARDFI----SRGGAKELVQISIES 575 (600)
Q Consensus 544 ~aL~nLa~---~~~~~~~lv----~~G~l~~Lv~ll~~~ 575 (600)
..+-.+-. +.+....++ +.|.-..+.+.+...
T Consensus 279 tLIN~lL~~apd~d~~~di~d~Le~~gi~~~i~r~l~~~ 317 (339)
T 3dad_A 279 TLINKTLAALPDQDSFYDVTDALEQQGMEALVQRHLGTA 317 (339)
T ss_dssp HHHHHHHHHCSSHHHHHHHHHHHHHTTHHHHHHHHHSCT
T ss_pred HHHHHHHhcCCChhHHHHHHHHHHHccHHHHHHHHHhcc
Confidence 77766632 223244444 455555666766654
No 84
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=97.16 E-value=0.0039 Score=61.96 Aligned_cols=149 Identities=9% Similarity=0.019 Sum_probs=106.7
Q ss_pred HHHHHHhh-CCCCHHHHHHHHHHHHHhhC--C-cchH-HHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcC-Ccc
Q 007520 349 LPKILQLL-TSEDPDVQIHAVKVVANLAA--E-DINQ-EKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMN-EMN 422 (600)
Q Consensus 349 V~~Lv~LL-~s~~~~vr~~Aa~aL~nLa~--~-~~~~-~~iv~~G~I~~Lv~lL~~~~~~~v~~~Al~aL~NLa~~-~~~ 422 (600)
+..|...+ ...+..++..|+.+|+.++. . +... ..... .+|+++..+. +....++..+..+|..++.+ +..
T Consensus 62 ~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~y~~~--llp~ll~~l~-dkk~~V~~aa~~al~~i~~~~~~~ 138 (249)
T 2qk1_A 62 LGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKDYVSL--VFTPLLDRTK-EKKPSVIEAIRKALLTICKYYDPL 138 (249)
T ss_dssp HHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHHHHHH--HHHHHHHGGG-CCCHHHHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHHHHHH--HHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHcccc
Confidence 45556677 68899999999999999985 2 3333 23223 5889999998 66788999999999988864 211
Q ss_pred HHHH-HHhCchhhhHhhhccCCCHHHHHHHHHHHHHHhCCchh--H--HHHHHcChHHHHHHHHcCCCHHHHHHHHHHHH
Q 007520 423 QGLI-MSRGGGQLLAKTASKTDDPQTLRMVAGALANLCGNEKL--H--TMLEEDGAIKALLAMVRSGNIDVIAQVARGLA 497 (600)
Q Consensus 423 r~~I-~~~G~I~~Lv~lL~~~~~~~v~~~Aa~aL~nLa~~~e~--r--~~i~~~G~i~~Lv~lL~s~~~~v~~~A~~aL~ 497 (600)
...- .+ ..++.|...|. +.++.++..++.+|..++..... . ........++.|..++.+.++.||..|..+|.
T Consensus 139 ~~~~~l~-~ll~~l~~~l~-~k~~~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~ 216 (249)
T 2qk1_A 139 ASSGRNE-DMLKDILEHMK-HKTPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFA 216 (249)
T ss_dssp CTTCTTH-HHHHHHHHHTT-CSSHHHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHH
T ss_pred ccCCcHH-HHHHHHHHHHc-CCChHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 1000 11 25667778885 46889999999999988733211 1 11222578999999999999999999999999
Q ss_pred HhhcC
Q 007520 498 NFAKC 502 (600)
Q Consensus 498 nLa~~ 502 (600)
.++..
T Consensus 217 ~i~~~ 221 (249)
T 2qk1_A 217 ILIKI 221 (249)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99743
No 85
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=97.07 E-value=0.023 Score=66.77 Aligned_cols=218 Identities=10% Similarity=0.067 Sum_probs=147.8
Q ss_pred CCHHHHHHhhCCCCHHHHHHHHHHHHHhhC-CcchHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcCCccHHH
Q 007520 347 VGLPKILQLLTSEDPDVQIHAVKVVANLAA-EDINQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMNEMNQGL 425 (600)
Q Consensus 347 GgV~~Lv~LL~s~~~~vr~~Aa~aL~nLa~-~~~~~~~iv~~G~I~~Lv~lL~~~~~~~v~~~Al~aL~NLa~~~~~r~~ 425 (600)
+-++.++..+.+....|+..|..++..+.. .+++.. ...+|.|+..|.+...=..+..|+.++..|+..- ...
T Consensus 95 ~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~----~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~--~~~ 168 (986)
T 2iw3_A 95 QLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAI----KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAA--KDQ 168 (986)
T ss_dssp TTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGH----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHS--HHH
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHH----HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHh--HHH
Confidence 457888888888889999999888888776 444432 2357889999976656677888999999998653 333
Q ss_pred HHH--hCchhhhHhhhccCCCHHHHHHHHHHHHHHh---CCchhHHHHHHcChHHHHHHHHcCCCHHHHHHHHHHHHHhh
Q 007520 426 IMS--RGGGQLLAKTASKTDDPQTLRMVAGALANLC---GNEKLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFA 500 (600)
Q Consensus 426 I~~--~G~I~~Lv~lL~~~~~~~v~~~Aa~aL~nLa---~~~e~r~~i~~~G~i~~Lv~lL~s~~~~v~~~A~~aL~nLa 500 (600)
+.. ...||.+...+-+ ..+++...|..++..+| .|.++. ..+|.|+..+..++. .-.+...|+.-+
T Consensus 169 ~~~~~~~~~p~~~~~~~d-~k~~v~~~~~~~~~~~~~~~~n~d~~------~~~~~~~~~~~~p~~--~~~~~~~l~~~t 239 (986)
T 2iw3_A 169 VALRMPELIPVLSETMWD-TKKEVKAAATAAMTKATETVDNKDIE------RFIPSLIQCIADPTE--VPETVHLLGATT 239 (986)
T ss_dssp HHHHHHHHHHHHHHHTTC-SSHHHHHHHHHHHHHHGGGCCCTTTG------GGHHHHHHHHHCTTH--HHHHHHHHTTCC
T ss_pred HHHhccchhcchHhhccc-CcHHHHHHHHHHHHHHHhcCCCcchh------hhHHHHHHHhcChhh--hHHHHHHhhcCe
Confidence 333 5678888888854 67789888888888887 445543 488999999987754 223333343333
Q ss_pred cCCchhhhhcchhhHHHHHhCCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcC---chhHHHHHHcccHHHHHHhhhcCCh
Q 007520 501 KCESRAIVQGQRKGRSHLMEDSALEWLIANSKTNSASTRRHVELALCHLAQN---EDNARDFISRGGAKELVQISIESSR 577 (600)
Q Consensus 501 ~~~~~~~~q~~~~~r~~l~e~g~l~~Lv~Ll~s~~~~v~~~Aa~aL~nLa~~---~~~~~~lv~~G~l~~Lv~ll~~~~~ 577 (600)
+-. + .....+ .=.+|.|.+-+......+++.++.++.|||.- +.....++ ...+|-|......-+.
T Consensus 240 fv~-~-------v~~~~l--~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~-~~l~p~~~~~~~~~~~ 308 (986)
T 2iw3_A 240 FVA-E-------VTPATL--SIMVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPFL-GKLLPGLKSNFATIAD 308 (986)
T ss_dssp CCS-C-------CCHHHH--HHHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHH-TTTHHHHHHHTTTCCS
T ss_pred eEe-e-------ecchhH--HHHHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHHHhhhh-hhhhhHHHHHhhccCC
Confidence 211 0 000000 01456666667778999999999999999863 33333333 4477888887777777
Q ss_pred HHHHHHHHHHHhc
Q 007520 578 EDIRNLAKKTMKS 590 (600)
Q Consensus 578 ~~ir~~A~~~L~~ 590 (600)
|+.|+.|.++++.
T Consensus 309 pe~r~~~~~a~~~ 321 (986)
T 2iw3_A 309 PEAREVTLRALKT 321 (986)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8888887766543
No 86
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=96.74 E-value=0.062 Score=50.77 Aligned_cols=175 Identities=17% Similarity=0.163 Sum_probs=122.7
Q ss_pred cCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcC-CccHHHHHHhCchhhhHhhhccCCCHHHHHHHHHHHHHHhC-Cchh
Q 007520 387 EGGLDALLLLLRTSQNTTILRVASGAIANLAMN-EMNQGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLCG-NEKL 464 (600)
Q Consensus 387 ~G~I~~Lv~lL~~~~~~~v~~~Al~aL~NLa~~-~~~r~~I~~~G~I~~Lv~lL~~~~~~~v~~~Aa~aL~nLa~-~~e~ 464 (600)
...+..++.+|. ++-=.++.+|+..+.+++.. |+....++ ..|+-+++.+.........+.+++.++. .|+.
T Consensus 31 ~~~l~~lI~~LD-DDlwtV~kNAl~vi~~i~~~~~el~epl~-----~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe~ 104 (253)
T 2db0_A 31 ESVLKKLIELLD-DDLWTVVKNAISIIMVIAKTREDLYEPML-----KKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPEL 104 (253)
T ss_dssp HHHHHHHHHHTT-CSCHHHHHHHHHHHHHHHTTCGGGHHHHH-----HHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHhc-cHHHHHHHhHHHHHHHHHHHhHHHHHHHH-----HHHHHHHhhcccCchHHHHHHHHhHHHHhCHHH
Confidence 346788888887 43446899999999999987 77666644 4566777777777777777888887763 3443
Q ss_pred HHHHHHcChHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchhhhhcchhhHHHHHhCCcHHHHHHhhcCCCHHHHHHHHH
Q 007520 465 HTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSKTNSASTRRHVEL 544 (600)
Q Consensus 465 r~~i~~~G~i~~Lv~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~q~~~~~r~~l~e~g~l~~Lv~Ll~s~~~~v~~~Aa~ 544 (600)
.. +.+|.++.-.+-+++.++.+...+|..++..+|+. -.+++.-+..++.+++..-+..|..
T Consensus 105 v~-----~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l-------------~~~v~rdi~smltskd~~Dkl~aLn 166 (253)
T 2db0_A 105 VK-----SMIPVLFANYRIGDEKTKINVSYALEEIAKANPML-------------MASIVRDFMSMLSSKNREDKLTALN 166 (253)
T ss_dssp HH-----HHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHH-------------HHHHHHHHHHHTSCSSHHHHHHHHH
T ss_pred HH-----hhHHHHHHHHhcCCccceecHHHHHHHHHHhChHH-------------HHHHHHHHHHHhcCCChHHHHHHHH
Confidence 22 46777777778899999999999999999877642 2346777888899888776766666
Q ss_pred HHHHhhcCchhHHHHHHcccHHHHHHhhhcCChHHHHHHHHHHHhc
Q 007520 545 ALCHLAQNEDNARDFISRGGAKELVQISIESSREDIRNLAKKTMKS 590 (600)
Q Consensus 545 aL~nLa~~~~~~~~lv~~G~l~~Lv~ll~~~~~~~ir~~A~~~L~~ 590 (600)
.+..|..+. ..-+.. .+|.|..++++.+ +-+|.-|+.+|-+
T Consensus 167 Fi~alGen~---~~yv~P-fLprL~aLL~D~d-eiVRaSaVEtL~~ 207 (253)
T 2db0_A 167 FIEAMGENS---FKYVNP-FLPRIINLLHDGD-EIVRASAVEALVH 207 (253)
T ss_dssp HHHTCCTTT---HHHHGG-GHHHHHGGGGCSS-HHHHHHHHHHHHH
T ss_pred HHHHHhccC---ccccCc-chHHHHHHHcCcc-hhhhHHHHHHHHH
Confidence 666554332 222222 5677777776544 5566666666644
No 87
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=96.71 E-value=0.1 Score=54.56 Aligned_cols=138 Identities=14% Similarity=0.128 Sum_probs=85.5
Q ss_pred HHHHHHHHccCCCHHHHHHHHHHHHHhhcCCccHHHHHHhCchhhhHhhhccCCCHHHHHHHHHHHHHHhCCchhHHHHH
Q 007520 390 LDALLLLLRTSQNTTILRVASGAIANLAMNEMNQGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLCGNEKLHTMLE 469 (600)
Q Consensus 390 I~~Lv~lL~~~~~~~v~~~Al~aL~NLa~~~~~r~~I~~~G~I~~Lv~lL~~~~~~~v~~~Aa~aL~nLa~~~e~r~~i~ 469 (600)
.+.+++++. ++|..+++.+...+.+++..++- .| =++..|.+=+. +++|-++-.|+++|+++...+-..
T Consensus 70 f~~v~kl~~-s~d~~lKrLvYLyl~~~~~~~~e--~i---Lv~Nsl~kDl~-~~N~~iR~lALRtL~~I~~~~m~~---- 138 (355)
T 3tjz_B 70 FFAMTKLFQ-SNDPTLRRMCYLTIKEMSCIAED--VI---IVTSSLTKDMT-GKEDSYRGPAVRALCQITDSTMLQ---- 138 (355)
T ss_dssp HHHHHGGGG-CCCHHHHHHHHHHHHHHTTTSSC--GG---GGHHHHHHHHH-SSCHHHHHHHHHHHHHHCCTTTHH----
T ss_pred HHHHHHHhc-CCCHHHHHHHHHHHHHhCCCHHH--HH---HHHHHHHhhcC-CCcHhHHHHHHHHHhcCCCHHHHH----
Confidence 344556666 66777777777777777665221 11 12334444443 356667777777777776544222
Q ss_pred HcChHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchhhhhcchhhHHHHHhCCcHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 007520 470 EDGAIKALLAMVRSGNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSKTNSASTRRHVELALCHL 549 (600)
Q Consensus 470 ~~G~i~~Lv~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~q~~~~~r~~l~e~g~l~~Lv~Ll~s~~~~v~~~Aa~aL~nL 549 (600)
...+.+-..+.+.+|.|+..|+-+...|....|+ +++ ++++.+..++.+.++.|+.+|..+|+.+
T Consensus 139 --~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe------------~v~-~~~~~l~~ll~d~n~~V~~~Al~lL~ei 203 (355)
T 3tjz_B 139 --AIERYMKQAIVDKVPSVSSSALVSSLHLLKCSFD------------VVK-RWVNEAQEAASSDNIMVQYHALGLLYHV 203 (355)
T ss_dssp --HHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHH------------HHH-TTHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHH------------HHH-HHHHHHHHHhcCCCccHHHHHHHHHHHH
Confidence 2445566667777777777777777777655433 222 5777777777777777777777777777
Q ss_pred hcCc
Q 007520 550 AQNE 553 (600)
Q Consensus 550 a~~~ 553 (600)
+.++
T Consensus 204 ~~~d 207 (355)
T 3tjz_B 204 RKND 207 (355)
T ss_dssp HTTC
T ss_pred Hhhc
Confidence 6543
No 88
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=96.70 E-value=0.16 Score=48.02 Aligned_cols=156 Identities=22% Similarity=0.247 Sum_probs=98.2
Q ss_pred hhhhch-HHHhHHHHHHHHHHhHHHHHHHHh---hhccHHHHHHHHHHHHHHHHHHhhhH---HHHHHHHHHHHHHHHHh
Q 007520 10 KEEFDY-ESLCRKLETQVDHLTAEIERKQKL---RENDKCELEKLLRECQISYDEAKDNL---VTQVELLTAKIEMQQKL 82 (600)
Q Consensus 10 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 82 (600)
.+|+.| ++++.++-.+++.+-+|..-.|.. .| .|+|+.+..+..+.+++.... ..|++.+|.+|+....-
T Consensus 9 ~ee~~ywk~~~~~~~q~~~~le~El~EFqesSrELE---~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e 85 (189)
T 2v71_A 9 KEETAYWKELSMKYKQSFQEARDELVEFQEGSRELE---AELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQ 85 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355554 888888888888888777665543 36 788888888888888777654 66888888888888887
Q ss_pred hhchhHHHHHHHHHHH---hhhHHHHHHHHHhHHHHHHHhhhHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHhhhhhhh
Q 007520 83 RENDKYEFEKQLRESQ---ISYDESMRNLVTRSEFLEKENAHLELEVEKILGELNHQKDQNNLKREKIVQLEISLKNSKQ 159 (600)
Q Consensus 83 ~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (600)
.......|++|+...+ ..+...+..|+..-.-|+...|.....+.|+...+|+-= ++..-||.+|..
T Consensus 86 ~~~~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~SleD~e~kln~ai-------Er~alLE~El~E--- 155 (189)
T 2v71_A 86 SYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIMSLEDFEQRLNQAI-------ERNAFLESELDE--- 155 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHH-------HHHHHHHHHHHH---
Confidence 7777788888766544 355556666666666777777777777777666655433 233335555543
Q ss_pred hhhhhhHHhhhhhhhhhhhHHHHHHHH
Q 007520 160 YEMENSTYQKALADTTQLYEKKIAELN 186 (600)
Q Consensus 160 ~~~~n~~~~~~l~~~~~~~~~~~~~l~ 186 (600)
...|.-++|-...++.||+
T Consensus 156 --------Ke~l~~~~QRLkdE~rDLk 174 (189)
T 2v71_A 156 --------KESLLVSVQRLKDEARDLR 174 (189)
T ss_dssp --------HHHHHCCC-----------
T ss_pred --------HHHHHHHHHHHHHHHHHHH
Confidence 1223346666666666665
No 89
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=96.21 E-value=0.24 Score=50.95 Aligned_cols=245 Identities=10% Similarity=0.021 Sum_probs=169.1
Q ss_pred HHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhC-CcchHHHH---HHcCCHHHHHHHHccCCCHHHHHHHHHHHHHh
Q 007520 341 AKICDEVGLPKILQLLTSEDPDVQIHAVKVVANLAA-EDINQEKI---VEEGGLDALLLLLRTSQNTTILRVASGAIANL 416 (600)
Q Consensus 341 ~~i~e~GgV~~Lv~LL~s~~~~vr~~Aa~aL~nLa~-~~~~~~~i---v~~G~I~~Lv~lL~~~~~~~v~~~Al~aL~NL 416 (600)
..+...+.+..|+..|..=+-+.|..++.+..++.. ..+.+... +.. -...|..++....++++.-.|...|+-.
T Consensus 72 ~ei~~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~-~peil~~L~~gYe~~diAl~~G~mLRec 150 (341)
T 1upk_A 72 QELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICT-QQNILFMLLKGYESPEIALNCGIMLREC 150 (341)
T ss_dssp HHHHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHT-CTHHHHHHHHGGGSTTTHHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHc-CHHHHHHHHHhhccchhHhHHHHHHHHH
Confidence 456677888899999988889999999999999886 33332222 222 2233334444455666777788889999
Q ss_pred hcCCccHHHHHHhCchhhhHhhhccCCCHHHHHHHHHHHHHH-hCCchhHHHHHHcC---hHHHHHHHHcCCCHHHHHHH
Q 007520 417 AMNEMNQGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANL-CGNEKLHTMLEEDG---AIKALLAMVRSGNIDVIAQV 492 (600)
Q Consensus 417 a~~~~~r~~I~~~G~I~~Lv~lL~~~~~~~v~~~Aa~aL~nL-a~~~e~r~~i~~~G---~i~~Lv~lL~s~~~~v~~~A 492 (600)
..++.....|...+.+-.+..... .++-++...|..++..| ...+.....+.... .+...-.+|.+++.-+++++
T Consensus 151 ir~e~la~~iL~~~~f~~fF~yv~-~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQS 229 (341)
T 1upk_A 151 IRHEPLAKIILWSEQFYDFFRYVE-MSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQS 229 (341)
T ss_dssp HTSHHHHHHHHHSGGGGHHHHHTT-CSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHH
T ss_pred HHhHHHHHHHhccHHHHHHHHHhc-CCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHH
Confidence 999999999998777777777774 47779999999988877 45566666666543 45567778899999999999
Q ss_pred HHHHHHhhcCCchhhhhcchhhHHHHHhCCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCch----hHHHHH--HcccHH
Q 007520 493 ARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSKTNSASTRRHVELALCHLAQNED----NARDFI--SRGGAK 566 (600)
Q Consensus 493 ~~aL~nLa~~~~~~~~q~~~~~r~~l~e~g~l~~Lv~Ll~s~~~~v~~~Aa~aL~nLa~~~~----~~~~lv--~~G~l~ 566 (600)
+..|+.|-.+.++. ......+-+..-+..++.++++.+..++..|-.++-..+.+|. ....++ +...+.
T Consensus 230 lKLLgelLldr~N~-----~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP~K~~~I~~IL~~Nr~kLl~ 304 (341)
T 1upk_A 230 LKLLGELLLDRHNF-----TIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKTQPILDILLKNQAKLIE 304 (341)
T ss_dssp HHHHHHHHHSGGGH-----HHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHhCchHH-----HHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCCCCChHHHHHHHHHHHHHHH
Confidence 99999998764331 1122223335678889999999999999999999988877664 333333 234455
Q ss_pred HHHHhhhcC-ChH---HHHHHHHHHHhcCc
Q 007520 567 ELVQISIES-SRE---DIRNLAKKTMKSNP 592 (600)
Q Consensus 567 ~Lv~ll~~~-~~~---~ir~~A~~~L~~~p 592 (600)
-|-.+..+. ..+ +-+...+..+...|
T Consensus 305 fl~~f~~d~~eDeqF~dEK~~lI~~I~~L~ 334 (341)
T 1upk_A 305 FLSKFQNDRTEDEQFNDEKTYLVKQIRDLK 334 (341)
T ss_dssp HHHHTTTTC-CCSHHHHHHHHHHHHHHTCC
T ss_pred HHHhCCCCCcchhhHHHHHHHHHHHHHhCC
Confidence 555554433 222 24444556565555
No 90
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=95.74 E-value=0.31 Score=49.78 Aligned_cols=145 Identities=11% Similarity=0.173 Sum_probs=95.1
Q ss_pred hhhccCCCHHHHHHHHHHHHHHhCCchhHHHHHHc--ChHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchhhhhcchhh
Q 007520 437 KTASKTDDPQTLRMVAGALANLCGNEKLHTMLEED--GAIKALLAMVRSGNIDVIAQVARGLANFAKCESRAIVQGQRKG 514 (600)
Q Consensus 437 ~lL~~~~~~~v~~~Aa~aL~nLa~~~e~r~~i~~~--G~i~~Lv~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~q~~~~~ 514 (600)
..+.....|..+..++++++|+...+.++..+... ..+..+...+.+.+..++..++.++.|++...-. ....+.
T Consensus 154 ~~~~~~~~p~n~ml~lR~l~NlF~~~~g~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~---~~~~~~ 230 (304)
T 3ebb_A 154 NLLNPKGKPANQLLALRTFCNCFVGQAGQKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHK---DHNIEG 230 (304)
T ss_dssp HTTCTTSCHHHHHHHHHHHHHGGGSHHHHHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHH---SCCHHH
T ss_pred HhcCCCCChHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhh---cCCchH
Confidence 33433345666788889999999999888877653 3444455455567899999999999999865210 000011
Q ss_pred HHHHHhCCcHHHHHHhhc-CCCHHHHHHHHHHHHHhhcCchhHHHHHHc-ccHHHHHHhhhcCChHHHHHHHHHHHh
Q 007520 515 RSHLMEDSALEWLIANSK-TNSASTRRHVELALCHLAQNEDNARDFISR-GGAKELVQISIESSREDIRNLAKKTMK 589 (600)
Q Consensus 515 r~~l~e~g~l~~Lv~Ll~-s~~~~v~~~Aa~aL~nLa~~~~~~~~lv~~-G~l~~Lv~ll~~~~~~~ir~~A~~~L~ 589 (600)
+. .++..+..++. ..+.+...++..||.+|...+.....+.+. |+...+-.+...+..+.+.+.+..+|.
T Consensus 231 ~~-----~ll~~l~~il~~~~d~EalyR~LvALGtL~~~~~~~~~lak~l~~~~~v~~~~~~~~~~kv~~~~~~~~~ 302 (304)
T 3ebb_A 231 KA-----QCLSLISTILEVVQDLEATFRLLVALGTLISDDSNAVQLAKSLGVDSQIKKYSSVSEPAKVSECCRFILN 302 (304)
T ss_dssp HH-----HHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHGGGGGGCCSSHHHHHHHHHHHT
T ss_pred HH-----HHHHHHHHHHhccCCHHHHHHHHHHHHHHHhCChhHHHHHHHcCHHHHHHHHHhCCCchhHHHHHHHHHH
Confidence 11 13344444443 358899999999999998776666666654 454455555555456678888877765
No 91
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=95.64 E-value=0.57 Score=46.45 Aligned_cols=39 Identities=13% Similarity=0.371 Sum_probs=29.6
Q ss_pred HHHHHHHHhHHHHHHHhhhHHHHHHHHHhhhhhhhhhhh
Q 007520 103 ESMRNLVTRSEFLEKENAHLELEVEKILGELNHQKDQNN 141 (600)
Q Consensus 103 ~~~~~l~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 141 (600)
..|..|...++++++++..++.++.+++..++..+....
T Consensus 90 kE~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~ 128 (256)
T 3na7_A 90 RELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQE 128 (256)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788888889999999999998888877655544433
No 92
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=95.41 E-value=0.78 Score=46.72 Aligned_cols=184 Identities=11% Similarity=0.061 Sum_probs=106.9
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHhhCCcchHHHHHHcCCHHHHH----HHHccCCCHHHHHHHHHHHHHhhcCCccHH
Q 007520 349 LPKILQLLTSEDPDVQIHAVKVVANLAAEDINQEKIVEEGGLDALL----LLLRTSQNTTILRVASGAIANLAMNEMNQG 424 (600)
Q Consensus 349 V~~Lv~LL~s~~~~vr~~Aa~aL~nLa~~~~~~~~iv~~G~I~~Lv----~lL~~~~~~~v~~~Al~aL~NLa~~~~~r~ 424 (600)
+..+..++.-+ .+.+..+.-+++-++.++.....+...+.-..++ ..+.+...+..+-.++++++|+..++..+.
T Consensus 105 l~~l~kil~WP-~~~~fPvLDLlRl~~l~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~~~g~~ 183 (304)
T 3ebb_A 105 LQILWKAINCP-EDIVFPALDILRLSIKHPSVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCNCFVGQAGQK 183 (304)
T ss_dssp HHHHHHHHTSC-TTTCHHHHHHHHHHTTSHHHHHHHHSTTTHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGSHHHHH
T ss_pred HHHHHHHHcCC-HHhHHHHHHHHHHHHcCccHHHHhhccccchHHHHHHHHhcCCCCChHHHHHHHHHHHHccCCchhHH
Confidence 34455554322 2334445555555444554444444332222333 334333455567789999999999988888
Q ss_pred HHHHh--CchhhhHhhhccCCCHHHHHHHHHHHHHHhCC----chhHHHHHHcChHHHHHHHHc-CCCHHHHHHHHHHHH
Q 007520 425 LIMSR--GGGQLLAKTASKTDDPQTLRMVAGALANLCGN----EKLHTMLEEDGAIKALLAMVR-SGNIDVIAQVARGLA 497 (600)
Q Consensus 425 ~I~~~--G~I~~Lv~lL~~~~~~~v~~~Aa~aL~nLa~~----~e~r~~i~~~G~i~~Lv~lL~-s~~~~v~~~A~~aL~ 497 (600)
.+... ..++.+...+. +.+..++..++.++.|++.. .+. .. ...++..+..++. ..+++....++-+|+
T Consensus 184 ~l~~~~~~il~~~~~~~~-~~nknl~iA~ATl~~NlAv~~~~~~~~-~~--~~~ll~~l~~il~~~~d~EalyR~LvALG 259 (304)
T 3ebb_A 184 LMMSQRESLMSHAIELKS-GSNKNIHIALATLALNYSVCFHKDHNI-EG--KAQCLSLISTILEVVQDLEATFRLLVALG 259 (304)
T ss_dssp HHHHTHHHHHHHHHGGGS-SCCHHHHHHHHHHHHHHHHHHHHSCCH-HH--HHHHHHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhc-CCChhHHHHHHHHHHHHHHHHhhcCCc-hH--HHHHHHHHHHHHhccCCHHHHHHHHHHHH
Confidence 87762 34445555543 46778899999999999832 111 10 1114444555554 568899999999999
Q ss_pred HhhcCCchhhhhcchhhHHHHHhCCcHHHHHHhhcC-CCHHHHHHHHHH
Q 007520 498 NFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSKT-NSASTRRHVELA 545 (600)
Q Consensus 498 nLa~~~~~~~~q~~~~~r~~l~e~g~l~~Lv~Ll~s-~~~~v~~~Aa~a 545 (600)
+|...++ ..+......|+..++-++... ..+.|...|...
T Consensus 260 tL~~~~~--------~~~~lak~l~~~~~v~~~~~~~~~~kv~~~~~~~ 300 (304)
T 3ebb_A 260 TLISDDS--------NAVQLAKSLGVDSQIKKYSSVSEPAKVSECCRFI 300 (304)
T ss_dssp HHHTTCH--------HHHHHHHHTTHHHHGGGGGGCCSSHHHHHHHHHH
T ss_pred HHHhCCh--------hHHHHHHHcCHHHHHHHHHhCCCchhHHHHHHHH
Confidence 9997642 233444445666666556554 345555554433
No 93
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=95.26 E-value=2 Score=40.40 Aligned_cols=103 Identities=11% Similarity=0.010 Sum_probs=67.9
Q ss_pred HHHHHHHhHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHhhhH
Q 007520 23 ETQVDHLTAEIERKQKLRENDKCELEKLLRECQISYDEAKDNLVTQVELLTAKIEMQQKLRENDKYEFEKQLRESQISYD 102 (600)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (600)
+-++.+-....++++.-+ ++++.-+.|-|.+=.|.|..+-++|+.+..+...=.... ..|..|+...+..|.
T Consensus 9 ~ee~~ywk~~~~~~~q~~----~~le~El~EFqesSrELE~ELE~eL~~~Ek~~~~L~~~~----~~L~~E~e~~k~K~~ 80 (189)
T 2v71_A 9 KEETAYWKELSMKYKQSF----QEARDELVEFQEGSRELEAELEAQLVQAEQRNRDLQADN----QRLKYEVEALKEKLE 80 (189)
T ss_dssp HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 345555556666665555 467777778888878888877777766655554444444 677777777777777
Q ss_pred HHHHHHHHhHHHHHHHhhhHHHHHHHHHhhh
Q 007520 103 ESMRNLVTRSEFLEKENAHLELEVEKILGEL 133 (600)
Q Consensus 103 ~~~~~l~~~~~~~~~e~~~~~~~~~~~~~~~ 133 (600)
.+........-.|.+|.+.|..+...+...|
T Consensus 81 ~~~~e~~~~~~~Lq~el~~l~~~~~~l~~~i 111 (189)
T 2v71_A 81 HQYAQSYKQVSVLEDDLSQTRAIKEQLHKYV 111 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777677777777766666655443
No 94
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=95.20 E-value=0.017 Score=38.12 Aligned_cols=31 Identities=29% Similarity=0.282 Sum_probs=27.2
Q ss_pred HHHHHHhHHHHHHHhhhHHHHHHHHHhhhhh
Q 007520 105 MRNLVTRSEFLEKENAHLELEVEKILGELNH 135 (600)
Q Consensus 105 ~~~l~~~~~~~~~e~~~~~~~~~~~~~~~~~ 135 (600)
|.+|+.|+|.|..+|++|+.|+.||+.-+.+
T Consensus 2 M~QLE~kVEeLl~~n~~Le~EV~RLk~Ll~~ 32 (33)
T 3m48_A 2 MAQLEAKVEELLSKNWNLENEVARLKKLVGE 32 (33)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred ccHHHHHHHHHHHHhHHHHHHHHHHHHHhhc
Confidence 4689999999999999999999999877654
No 95
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=94.97 E-value=0.43 Score=46.63 Aligned_cols=158 Identities=15% Similarity=0.130 Sum_probs=104.4
Q ss_pred HHHHHHcCCHHHHHHHHccC----------CCHHHHHHHHHHHHHhhcCCccHHHHHH-hCchhhhHhhhccCCCHHHHH
Q 007520 381 QEKIVEEGGLDALLLLLRTS----------QNTTILRVASGAIANLAMNEMNQGLIMS-RGGGQLLAKTASKTDDPQTLR 449 (600)
Q Consensus 381 ~~~iv~~G~I~~Lv~lL~~~----------~~~~v~~~Al~aL~NLa~~~~~r~~I~~-~G~I~~Lv~lL~~~~~~~v~~ 449 (600)
-..| ..||+..|+.+|... .+......++.||..|..+..+...++. .+++..|+..| .++.+.++.
T Consensus 37 v~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L-~s~~~~~r~ 114 (233)
T 2f31_A 37 VQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAM-DPAVPNMMI 114 (233)
T ss_dssp HHHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTSSHHHHHHHHTSSSHHHHHHTTC-CTTSHHHHH
T ss_pred HHHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhCChHHHHHHHcCcHHHHHHHHHh-CCCCchHHH
Confidence 3444 467888888887531 1345677799999999888777777776 77888888888 568889999
Q ss_pred HHHHHHHHHhCCch--h-HHHHHH----------cChHHHHHHHHc-CCCHHHHHHHHHHHHHhhcCCchhhhhcchhhH
Q 007520 450 MVAGALANLCGNEK--L-HTMLEE----------DGAIKALLAMVR-SGNIDVIAQVARGLANFAKCESRAIVQGQRKGR 515 (600)
Q Consensus 450 ~Aa~aL~nLa~~~e--~-r~~i~~----------~G~i~~Lv~lL~-s~~~~v~~~A~~aL~nLa~~~~~~~~q~~~~~r 515 (600)
.++..|..+|..+. + ...+.+ ......++..+. +.+......++..+-.+....++...+ -..|
T Consensus 115 ~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li~~~~dl~~R--~~lR 192 (233)
T 2f31_A 115 DAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFR--VHIR 192 (233)
T ss_dssp HHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHH--HHHH
T ss_pred HHHHHHHHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcCChHHHHHHHHHHHHHHHCCCCCHHHH--HHHH
Confidence 99999988886543 4 444432 234556777776 455666666665555555443322211 3467
Q ss_pred HHHHhCCcHHHHHHhhcCCCHHHHHHH
Q 007520 516 SHLMEDSALEWLIANSKTNSASTRRHV 542 (600)
Q Consensus 516 ~~l~e~g~l~~Lv~Ll~s~~~~v~~~A 542 (600)
..+...|..+.+-.+-...++.+....
T Consensus 193 ~ef~~~Gl~~il~~l~~~~~~~L~~Qi 219 (233)
T 2f31_A 193 SELMRLGLHQVLQELREIENEDMKVQL 219 (233)
T ss_dssp HHHHHTTHHHHHHHHHHCCCHHHHHHH
T ss_pred HHHHHCChHHHHHHHhccCCHHHHHHH
Confidence 777788877777766555666665443
No 96
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=94.94 E-value=0.5 Score=49.81 Aligned_cols=156 Identities=15% Similarity=0.136 Sum_probs=104.7
Q ss_pred HHHHHcCCHHHHHHHHcc----------CCCHHHHHHHHHHHHHhhcCCccHHHHHH-hCchhhhHhhhccCCCHHHHHH
Q 007520 382 EKIVEEGGLDALLLLLRT----------SQNTTILRVASGAIANLAMNEMNQGLIMS-RGGGQLLAKTASKTDDPQTLRM 450 (600)
Q Consensus 382 ~~iv~~G~I~~Lv~lL~~----------~~~~~v~~~Al~aL~NLa~~~~~r~~I~~-~G~I~~Lv~lL~~~~~~~v~~~ 450 (600)
..|+ .+|+..|+.+|.. ..+......++.||..|.-+..+...++. ..+|..|+..| .+..+.++..
T Consensus 104 ~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN~~~G~~~vl~~~~~i~~l~~~L-~s~~~~~~~~ 181 (383)
T 3eg5_B 104 QTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAM-DPAVPNMMID 181 (383)
T ss_dssp HHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTSSHHHHHHHHTCSSHHHHHHHTC-CTTSHHHHHH
T ss_pred HHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhcchhhHHHHHcChHHHHHHHHHh-CCCchHHHHH
Confidence 4454 6688888888742 22446777899999999888777777776 77889999888 4688899999
Q ss_pred HHHHHHHHhCCch--h-HHHHHH----------cChHHHHHHHHcC-CCHHHHHHHHHHHHHhhcCCchhhhhcchhhHH
Q 007520 451 VAGALANLCGNEK--L-HTMLEE----------DGAIKALLAMVRS-GNIDVIAQVARGLANFAKCESRAIVQGQRKGRS 516 (600)
Q Consensus 451 Aa~aL~nLa~~~e--~-r~~i~~----------~G~i~~Lv~lL~s-~~~~v~~~A~~aL~nLa~~~~~~~~q~~~~~r~ 516 (600)
|+..|..+|..++ + ...+.+ ...+..++..|.. .+......++..+-.+....++...+ -..|.
T Consensus 182 aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~li~~~~dl~~R--~~lR~ 259 (383)
T 3eg5_B 182 AAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFR--VHIRS 259 (383)
T ss_dssp HHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHH--HHHHH
T ss_pred HHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHccCcHHHHHHHHHHHHHHHcCCCCHHHH--HHHHH
Confidence 9999999986543 2 444332 2456678888875 56666666666665565443332211 34677
Q ss_pred HHHhCCcHHHHHHhhcCCCHHHHHH
Q 007520 517 HLMEDSALEWLIANSKTNSASTRRH 541 (600)
Q Consensus 517 ~l~e~g~l~~Lv~Ll~s~~~~v~~~ 541 (600)
.|...|..+.+-.+=..+++.+...
T Consensus 260 ef~~~Gl~~il~~lr~~~~~~L~~Q 284 (383)
T 3eg5_B 260 ELMRLGLHQVLQELREIENEDMKVQ 284 (383)
T ss_dssp HHHHTTHHHHHHHHTTSCCHHHHHH
T ss_pred HHHHCChHHHHHHHhcCCChhHHHH
Confidence 7878888887777544455555443
No 97
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=94.88 E-value=0.28 Score=42.94 Aligned_cols=33 Identities=27% Similarity=0.521 Sum_probs=26.2
Q ss_pred hhHHHHHHHHHhHHHHHHHhhhHHHHHHHHHhh
Q 007520 100 SYDESMRNLVTRSEFLEKENAHLELEVEKILGE 132 (600)
Q Consensus 100 ~~~~~~~~l~~~~~~~~~e~~~~~~~~~~~~~~ 132 (600)
-|...|..|..+++.+..+|.+|..++..+...
T Consensus 17 ~ye~~I~~LR~qid~~~~e~a~l~leldn~~~~ 49 (119)
T 3ol1_A 17 LYEEEMRELRRQVDQLTNDKARVEVERDNLAED 49 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666699999999999999999998875444
No 98
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=94.79 E-value=0.037 Score=37.12 Aligned_cols=33 Identities=18% Similarity=0.207 Sum_probs=29.2
Q ss_pred HHHHHHHhHHHHHHHhhhHHHHHHHHHhhhhhh
Q 007520 104 SMRNLVTRSEFLEKENAHLELEVEKILGELNHQ 136 (600)
Q Consensus 104 ~~~~l~~~~~~~~~e~~~~~~~~~~~~~~~~~~ 136 (600)
.+.+|+.|+|+|..+|++|+.|+.||+.-+..-
T Consensus 2 RMnQLE~KVEeLl~~~~~Le~eV~RLk~ll~~~ 34 (36)
T 1kd8_B 2 KVKQLKAKVEELKSKLWHLKNKVARLKKKNAEC 34 (36)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHHHHhccc
Confidence 478999999999999999999999998876543
No 99
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=94.73 E-value=2.6 Score=38.87 Aligned_cols=94 Identities=19% Similarity=0.171 Sum_probs=68.0
Q ss_pred hhhhhhHHHHHHHHHHhHhHHHhhhhhHHHHHHHHHHHhhhhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007520 173 DTTQLYEKKIAELNKKLEDEHACFEGAVEQLDMVKKLLSDYQNSNQGQKEVHELCVKLKETRQLHESAVYEVQTLKSEYK 252 (600)
Q Consensus 173 ~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~~~~~~~~~~~q~~~~~~~e~~~l~~~~~d~~~~~e~~~~el~~l~~~~~ 252 (600)
..--..+.++..|+-.|+.|..-+..+.+.+.. +|+ -...|...+..++.-......|-+.|...+.
T Consensus 62 ~~k~~Leke~~~LQa~L~qEr~~r~q~se~~~e-------lq~------ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~ 128 (168)
T 3o0z_A 62 NSKSQTDKDYYQLQAILEAERRDRGHDSEMIGD-------LQA------RITSLQEEVKHLKHNLEKVEGERKEAQDMLN 128 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355677889999999999998887777765554 222 2356667777777777777777777888888
Q ss_pred HHHHhhhhch----HHHHHHHHhhhHHHHhh
Q 007520 253 NLLEEKETMS----DELQAARQRLLVEEKQR 279 (600)
Q Consensus 253 ~l~~~~~~~~----~el~~~~~~l~~e~~~~ 279 (600)
.+.+..+.+. =+|..++.++..|...-
T Consensus 129 ~lEKe~a~~eid~~~eLKalQ~~~eqE~~~H 159 (168)
T 3o0z_A 129 HSEKEKNNLEIDLNYKLKSLQQRLEQEVNEH 159 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888776 66777777776654433
No 100
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=94.73 E-value=1.3 Score=45.56 Aligned_cols=197 Identities=12% Similarity=0.069 Sum_probs=141.1
Q ss_pred HHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcC-CccHHHHHH--hCchhhhHhhhccCCCHHHHHHHHHHHHHHh
Q 007520 383 KIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMN-EMNQGLIMS--RGGGQLLAKTASKTDDPQTLRMVAGALANLC 459 (600)
Q Consensus 383 ~iv~~G~I~~Lv~lL~~~~~~~v~~~Al~aL~NLa~~-~~~r~~I~~--~G~I~~Lv~lL~~~~~~~v~~~Aa~aL~nLa 459 (600)
.+...+.+..|+..|. .-+-+.+..+..+..++... ...+...++ ..--..|..++...+++++.-.+...|+..+
T Consensus 73 ei~~~dll~~Li~~l~-~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe~~diAl~~G~mLReci 151 (341)
T 1upk_A 73 ELYNSGLLSTLVADLQ-LIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYESPEIALNCGIMLRECI 151 (341)
T ss_dssp HHHHHSHHHHHHHTGG-GSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGGSTTTHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHhcc-cCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhccchhHhHHHHHHHHHH
Confidence 4556678888888887 45677888899999998876 333222222 1112223333333456677777777899889
Q ss_pred CCchhHHHHHHcChHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchhhhhcchhhHHHHHh---CCcHHHHHHhhcCCCH
Q 007520 460 GNEKLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLME---DSALEWLIANSKTNSA 536 (600)
Q Consensus 460 ~~~e~r~~i~~~G~i~~Lv~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~q~~~~~r~~l~e---~g~l~~Lv~Ll~s~~~ 536 (600)
..+.....+...+.+-.++..+..++-++...|..++.-|-... +..-..++. .......-.++.+++-
T Consensus 152 r~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~H--------k~lvaefL~~nyd~Ff~~y~~Ll~S~NY 223 (341)
T 1upk_A 152 RHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRH--------KLLSAEFLEQHYDRFFSEYEKLLHSENY 223 (341)
T ss_dssp TSHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSS--------HHHHHHHHHHTHHHHHHHHHHHTTCSSH
T ss_pred HhHHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhcc--------HHHHHHHHHHhHHHHHHHHHHHhcCCcc
Confidence 99999999999998889999999999999999999998885442 222222333 2456677779999999
Q ss_pred HHHHHHHHHHHHhhcCchhHHHHH----HcccHHHHHHhhhcCChHHHHHHHHHHHh
Q 007520 537 STRRHVELALCHLAQNEDNARDFI----SRGGAKELVQISIESSREDIRNLAKKTMK 589 (600)
Q Consensus 537 ~v~~~Aa~aL~nLa~~~~~~~~lv----~~G~l~~Lv~ll~~~~~~~ir~~A~~~L~ 589 (600)
-+++.+...|..|-.+..+...|. +..-+..++.++++.+ ..|+-.|.++.+
T Consensus 224 VTkRQSlKLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~s-k~Iq~EAFhVFK 279 (341)
T 1upk_A 224 VTKRQSLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKS-RNIQFEAFHVFK 279 (341)
T ss_dssp HHHHHHHHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSC-HHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCch-hchhhhhhhhee
Confidence 999999999999988888766665 3457788888888765 556666665543
No 101
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=94.59 E-value=0.71 Score=45.68 Aligned_cols=152 Identities=15% Similarity=0.063 Sum_probs=110.3
Q ss_pred HHHHHHHHHhhcCCccHHHHHHhCchhhhHhhhccCC--C--HHHHHHHHHHHHHHh--CCchhHHHHHHcChHHHHHHH
Q 007520 407 RVASGAIANLAMNEMNQGLIMSRGGGQLLAKTASKTD--D--PQTLRMVAGALANLC--GNEKLHTMLEEDGAIKALLAM 480 (600)
Q Consensus 407 ~~Al~aL~NLa~~~~~r~~I~~~G~I~~Lv~lL~~~~--~--~~v~~~Aa~aL~nLa--~~~e~r~~i~~~G~i~~Lv~l 480 (600)
-+|+..|.-+|.+|+.|..++++...-.|...|.... . .-++-.++++++.|. .+++....+.+.+.+|..+..
T Consensus 74 cnaLaLlQcvAshpetr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLri 153 (268)
T 2fv2_A 74 CNALALLQCVASHPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRI 153 (268)
T ss_dssp HHHHHHHHHHHHCTTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHcCcchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHH
Confidence 3466777888999999999999977767777774321 1 245667888999997 567788888999999999999
Q ss_pred HcCCCHHHHHHHHHHHHHhhcCCchh--hhhcchhhHHHHHhCCcHHHHHH-hhcCCCHHHHHHHHHHHHHhhcCchhHH
Q 007520 481 VRSGNIDVIAQVARGLANFAKCESRA--IVQGQRKGRSHLMEDSALEWLIA-NSKTNSASTRRHVELALCHLAQNEDNAR 557 (600)
Q Consensus 481 L~s~~~~v~~~A~~aL~nLa~~~~~~--~~q~~~~~r~~l~e~g~l~~Lv~-Ll~s~~~~v~~~Aa~aL~nLa~~~~~~~ 557 (600)
|..++.-.+.-|..++..+-.++..- +.++ .+ | ...-..++..++. +...+++.+-.++..+-..|+.++..+.
T Consensus 154 me~GselSKtvAtfIlqKIL~dd~GL~YiC~t-~e-R-F~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~rar~ 230 (268)
T 2fv2_A 154 MESGSELSKTVATFILQKILLDDTGLAYICQT-YE-R-FSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPRARE 230 (268)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHSHHHHHHHTSS-HH-H-HHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSHHHHH
T ss_pred HhhccHHHHHHHHHHHHHHhccchhHHHHHcc-HH-H-HHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCHHHHH
Confidence 99999998999999999887553210 0100 00 1 1111223333333 5677899999999999999999998877
Q ss_pred HHHH
Q 007520 558 DFIS 561 (600)
Q Consensus 558 ~lv~ 561 (600)
.+..
T Consensus 231 aL~~ 234 (268)
T 2fv2_A 231 ALRQ 234 (268)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7764
No 102
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=94.49 E-value=0.42 Score=47.45 Aligned_cols=186 Identities=12% Similarity=0.116 Sum_probs=115.4
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHhhCCcc-h--HHHHH-HcCC-HHHHHHHHccCCCHHHHHHHHHHHHHhhcC--C-c-c
Q 007520 352 ILQLLTSEDPDVQIHAVKVVANLAAEDI-N--QEKIV-EEGG-LDALLLLLRTSQNTTILRVASGAIANLAMN--E-M-N 422 (600)
Q Consensus 352 Lv~LL~s~~~~vr~~Aa~aL~nLa~~~~-~--~~~iv-~~G~-I~~Lv~lL~~~~~~~v~~~Al~aL~NLa~~--~-~-~ 422 (600)
|-.-|.+.+...|..|...|..+..... . ..... ..+. ++.+-..+. +.+..+...++.+|..++.. . . .
T Consensus 14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~-DsN~~v~~~al~~l~~~~~~~~~~~~~ 92 (278)
T 4ffb_C 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYIT-DSNVVAQEQAIVALNSLIDAFASSSLK 92 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTT-CSSHHHHHHHHHHHHHHHTTCC---CC
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhc-cchHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 4567789999999999999987654221 1 11111 1222 344455665 77889999999999988754 1 1 1
Q ss_pred HH--HHHHhCchhhhHh-hhccCCCHHHHHHHHHHHHHHhCCchhHHHHHHcChHHHHHHHHcCCCHHHHHHHHHHHHHh
Q 007520 423 QG--LIMSRGGGQLLAK-TASKTDDPQTLRMVAGALANLCGNEKLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANF 499 (600)
Q Consensus 423 r~--~I~~~G~I~~Lv~-lL~~~~~~~v~~~Aa~aL~nLa~~~e~r~~i~~~G~i~~Lv~lL~s~~~~v~~~A~~aL~nL 499 (600)
+. ...-...++.|+. .|. +..+.++..+..++..++....... .++..++..+.+.+|.++..++..|..+
T Consensus 93 ~~~~~~~~~~~l~~lveK~l~-~~k~~~~~~a~~~l~~~~~~~~~~~-----~~~e~l~~~l~~Knpkv~~~~l~~l~~~ 166 (278)
T 4ffb_C 93 NAHNITLISTWTPLLVEKGLT-SSRATTKTQSMSCILSLCGLDTSIT-----QSVELVIPFFEKKLPKLIAAAANCVYEL 166 (278)
T ss_dssp HHHHHHHHHHHHHHHHHHTSS-CCCHHHHHHHHHHHHHHHHTSSSSH-----HHHHHHGGGGGCSCHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHhc-CccHHHHHHHHHHHHHHHHhcCcHH-----HHHHHHHHHHhccCHHHHHHHHHHHHHH
Confidence 22 1222446777765 453 3567788888887776653221111 1345566677899999999999888887
Q ss_pred hcC-CchhhhhcchhhHHHHHhCCcHHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 007520 500 AKC-ESRAIVQGQRKGRSHLMEDSALEWLIANSKTNSASTRRHVELALCHLAQ 551 (600)
Q Consensus 500 a~~-~~~~~~q~~~~~r~~l~e~g~l~~Lv~Ll~s~~~~v~~~Aa~aL~nLa~ 551 (600)
... +.... ..+..+ ..+++.+..++.+.++.||..|..++..|-.
T Consensus 167 l~~fg~~~~-----~~k~~l--~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~ 212 (278)
T 4ffb_C 167 MAAFGLTNV-----NVQTFL--PELLKHVPQLAGHGDRNVRSQTMNLIVEIYK 212 (278)
T ss_dssp HHHHTTTTC-----CHHHHH--HHHGGGHHHHHTCSSHHHHHHHHHHHHHHHT
T ss_pred HHHhCCCcC-----CchhHH--HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence 532 11000 001111 1245667778899999999999999988754
No 103
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=94.47 E-value=0.044 Score=36.19 Aligned_cols=32 Identities=22% Similarity=0.192 Sum_probs=28.2
Q ss_pred HHHHHHHhHHHHHHHhhhHHHHHHHHHhhhhh
Q 007520 104 SMRNLVTRSEFLEKENAHLELEVEKILGELNH 135 (600)
Q Consensus 104 ~~~~l~~~~~~~~~e~~~~~~~~~~~~~~~~~ 135 (600)
.+.+|+.|+|.|-.+|.+|+.|+.||+.-+..
T Consensus 2 RMnQLEdKVEeLl~~~~~Le~EV~RLk~ll~~ 33 (34)
T 3c3f_A 2 RMXQIEXKLEXILSXLYHXENEXARIXKLLXE 33 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred cHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhc
Confidence 46799999999999999999999999877643
No 104
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=94.44 E-value=0.037 Score=36.67 Aligned_cols=31 Identities=23% Similarity=0.300 Sum_probs=28.2
Q ss_pred HHHHHHhHHHHHHHhhhHHHHHHHHHhhhhh
Q 007520 105 MRNLVTRSEFLEKENAHLELEVEKILGELNH 135 (600)
Q Consensus 105 ~~~l~~~~~~~~~e~~~~~~~~~~~~~~~~~ 135 (600)
|.+|+.|+|.|-.+|++|+.|+.||+.-+.+
T Consensus 3 M~QLEdKVEeLl~~n~~Le~EV~RLk~LL~~ 33 (34)
T 1uo4_A 3 MKQIEDKGEEILSKLYHIENELARIKKLLGE 33 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHHcc
Confidence 5799999999999999999999999887654
No 105
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=94.43 E-value=0.033 Score=37.33 Aligned_cols=31 Identities=32% Similarity=0.333 Sum_probs=27.9
Q ss_pred HHHHHHHhHHHHHHHhhhHHHHHHHHHhhhh
Q 007520 104 SMRNLVTRSEFLEKENAHLELEVEKILGELN 134 (600)
Q Consensus 104 ~~~~l~~~~~~~~~e~~~~~~~~~~~~~~~~ 134 (600)
.+.+|+.++|.|..+|++|+.|+.||++.+.
T Consensus 2 RMnQLE~kVEeLl~~~~~Le~EV~RL~~ll~ 32 (36)
T 1kd8_A 2 EVKQLEAEVEEIESEVWHLENEVARLEKENA 32 (36)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 4679999999999999999999999987753
No 106
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=94.35 E-value=0.98 Score=53.16 Aligned_cols=214 Identities=13% Similarity=0.030 Sum_probs=134.1
Q ss_pred CCHHHHHHhhCCCCHHHHHHHHHHHHHhhCC----cchHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcC-Cc
Q 007520 347 VGLPKILQLLTSEDPDVQIHAVKVVANLAAE----DINQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMN-EM 421 (600)
Q Consensus 347 GgV~~Lv~LL~s~~~~vr~~Aa~aL~nLa~~----~~~~~~iv~~G~I~~Lv~lL~~~~~~~v~~~Al~aL~NLa~~-~~ 421 (600)
+.+..|...+...... +.|+.++..++.. +..-..++ +.+|.++..+. +....++..|..++..|... +.
T Consensus 54 ~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~~--~~~~~~~~~~~-dk~~~v~~aa~~~~~~~~~~~~~ 128 (986)
T 2iw3_A 54 HFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYIV--QLVPAICTNAG-NKDKEIQSVASETLISIVNAVNP 128 (986)
T ss_dssp HHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHHH--TTHHHHHHHTT-CSSHHHHHHHHHHHHHHHHHSCG
T ss_pred hHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccchH--HHHHHHHHHhc-CCchHHHHHHHHHHHHHHHhCCH
Confidence 3455666666554333 8888889988852 22333333 46888888887 66788999888888888754 33
Q ss_pred cHHHHHHhCchhhhHhhhccCCCHHHHHHHHHHHHHHhCCchhHHHHHHcChHHHHHHHHcCCCHHHHHHHHHHHHHhhc
Q 007520 422 NQGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLCGNEKLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFAK 501 (600)
Q Consensus 422 ~r~~I~~~G~I~~Lv~lL~~~~~~~v~~~Aa~aL~nLa~~~e~r~~i~~~G~i~~Lv~lL~s~~~~v~~~A~~aL~nLa~ 501 (600)
... ...+|.|+..|..+..=+....|+.+|..|+.....+-...=...||.+...+.+..+.|...|..+|..+|.
T Consensus 129 ~a~----~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~ 204 (986)
T 2iw3_A 129 VAI----KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATE 204 (986)
T ss_dssp GGH----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGG
T ss_pred HHH----HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHh
Confidence 222 3367888888865555678888999999998543222222224688899999999999999999999999987
Q ss_pred CCchhhhhcchhhHHHHHhCCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCch-hHHHHHHcccHHHHHHhhhcCChHHH
Q 007520 502 CESRAIVQGQRKGRSHLMEDSALEWLIANSKTNSASTRRHVELALCHLAQNED-NARDFISRGGAKELVQISIESSREDI 580 (600)
Q Consensus 502 ~~~~~~~q~~~~~r~~l~e~g~l~~Lv~Ll~s~~~~v~~~Aa~aL~nLa~~~~-~~~~lv~~G~l~~Lv~ll~~~~~~~i 580 (600)
.-.+. + -...+|.|+..+.+++. + -.+...|..-+.-.+ ....+. =.+|.|.+-+...+....
T Consensus 205 ~~~n~------d------~~~~~~~~~~~~~~p~~-~-~~~~~~l~~~tfv~~v~~~~l~--~~~p~l~r~l~~~~~~~~ 268 (986)
T 2iw3_A 205 TVDNK------D------IERFIPSLIQCIADPTE-V-PETVHLLGATTFVAEVTPATLS--IMVPLLSRGLNERETGIK 268 (986)
T ss_dssp GCCCT------T------TGGGHHHHHHHHHCTTH-H-HHHHHHHTTCCCCSCCCHHHHH--HHHHHHHHHHTSSSHHHH
T ss_pred cCCCc------c------hhhhHHHHHHHhcChhh-h-HHHHHHhhcCeeEeeecchhHH--HHHHHHHhhhccCcchhh
Confidence 53221 1 13578888887776643 2 222233322222111 222221 135667777766555555
Q ss_pred HHHHH
Q 007520 581 RNLAK 585 (600)
Q Consensus 581 r~~A~ 585 (600)
|..|+
T Consensus 269 r~~~~ 273 (986)
T 2iw3_A 269 RKSAV 273 (986)
T ss_dssp HHHHH
T ss_pred eeeEE
Confidence 55544
No 107
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=94.25 E-value=0.54 Score=56.11 Aligned_cols=41 Identities=15% Similarity=0.071 Sum_probs=20.4
Q ss_pred HHHHHHHHHhhhHHHHHHHHHhHHHHHHHhhhHHHHHHHHH
Q 007520 90 FEKQLRESQISYDESMRNLVTRSEFLEKENAHLELEVEKIL 130 (600)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~e~~~~~~~~~~~~ 130 (600)
+.+|....+..+.+....|..++..|++||..|+..+++|.
T Consensus 1003 ~~ke~~~lee~~~~~~~~L~~kv~~L~~e~~~L~qq~~~l~ 1043 (1080)
T 2dfs_A 1003 TQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELN 1043 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333334444444555555555555555555555555
No 108
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=94.19 E-value=0.052 Score=35.93 Aligned_cols=31 Identities=29% Similarity=0.305 Sum_probs=28.0
Q ss_pred HHHHHHHhHHHHHHHhhhHHHHHHHHHhhhh
Q 007520 104 SMRNLVTRSEFLEKENAHLELEVEKILGELN 134 (600)
Q Consensus 104 ~~~~l~~~~~~~~~e~~~~~~~~~~~~~~~~ 134 (600)
.+.+|+.|+|.|-.+|+.|+.|+.||+.-+.
T Consensus 2 RMnQLE~kVEeLl~~n~~Le~eV~rLk~ll~ 32 (34)
T 2oxj_A 2 RMXQLEXKVXELLXKNXHLEXEVXRLKXLVX 32 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred cHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 4679999999999999999999999987654
No 109
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=94.13 E-value=0.07 Score=35.09 Aligned_cols=31 Identities=16% Similarity=0.184 Sum_probs=27.4
Q ss_pred HHHHHHhHHHHHHHhhhHHHHHHHHHhhhhh
Q 007520 105 MRNLVTRSEFLEKENAHLELEVEKILGELNH 135 (600)
Q Consensus 105 ~~~l~~~~~~~~~e~~~~~~~~~~~~~~~~~ 135 (600)
+.+|+.|+|.|-.+|.+|+.|+.||+.-+..
T Consensus 2 MnQLEdKvEeLl~~~~~Le~EV~RLk~lL~~ 32 (33)
T 3c3g_A 2 MKXIEXKLXEIXSKXYHXENXLARIKXLLXE 32 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred ccHHHHHHHHHHHHhhHHHHHHHHHHHHHcc
Confidence 5799999999999999999999999876643
No 110
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=93.96 E-value=0.051 Score=36.02 Aligned_cols=32 Identities=19% Similarity=0.244 Sum_probs=27.2
Q ss_pred HHHHHHHhHHHHHHHhhhHHHHHHHHHhhhhh
Q 007520 104 SMRNLVTRSEFLEKENAHLELEVEKILGELNH 135 (600)
Q Consensus 104 ~~~~l~~~~~~~~~e~~~~~~~~~~~~~~~~~ 135 (600)
.|.+|+.|+|.|-.+|.+|+.|+.||+.-+..
T Consensus 2 RMnQLEdKvEeLl~~~~~L~~EV~RLk~lL~~ 33 (34)
T 2bni_A 2 RMKQIEDKLEEILSKGHHICNELARIKKLLGE 33 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred chhHHHHHHHHHHHccHHHHHHHHHHHHHhcc
Confidence 46799999999999999999999999876643
No 111
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=93.69 E-value=0.82 Score=47.16 Aligned_cols=109 Identities=14% Similarity=0.201 Sum_probs=85.4
Q ss_pred HHHhhCCcch-HHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcCCccHHHHHHhCchhhhHhhhccCCCHHHHH
Q 007520 371 VANLAAEDIN-QEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMNEMNQGLIMSRGGGQLLAKTASKTDDPQTLR 449 (600)
Q Consensus 371 L~nLa~~~~~-~~~iv~~G~I~~Lv~lL~~~~~~~v~~~Al~aL~NLa~~~~~r~~I~~~G~I~~Lv~lL~~~~~~~v~~ 449 (600)
|.||..++.+ -.-++..+|+..+..++. .++.++.+..+..|...+.....+..-.+ ..+|.++..+...++.++..
T Consensus 266 LL~LLmHdSnAIDGFVk~DGv~~I~Tvin-YpN~~l~RaG~KLLLQVSDaksL~~t~L~-e~LPFi~~~i~~h~eDdvvY 343 (619)
T 3c2g_A 266 LLGLLLHDSDAIDGFVRSDGVGAITTVVQ-YPNNDLIRAGCKLLLQVSDAKALAKTPLE-NILPFLLRLIEIHPDDEVIY 343 (619)
T ss_dssp HHHHHCCSHHHHHHHHHTTHHHHHHHHTT-SSCHHHHHHHHHHHHHHTTCGGGGTSCCT-THHHHHHHHHHHCCCHHHHH
T ss_pred HHHHHhcccccccceeecccceeEEEEee-cCCcHHHHhhhheeeeecchHHHhhcccc-ccchHHHHHhccCCCcceEE
Confidence 4466665554 788999999999999998 88999999999999888766444332222 36788888887778889999
Q ss_pred HHHHHHHHHhCC-chhHHHHHHcChHHHHHHHH
Q 007520 450 MVAGALANLCGN-EKLHTMLEEDGAIKALLAMV 481 (600)
Q Consensus 450 ~Aa~aL~nLa~~-~e~r~~i~~~G~i~~Lv~lL 481 (600)
...+-|.|.... ...+...+..|+++.|-..+
T Consensus 344 SGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I 376 (619)
T 3c2g_A 344 SGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTII 376 (619)
T ss_dssp HHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHH
T ss_pred ecchHHHHHHhcccchHHHHhccCcHHHHHHHH
Confidence 999999999755 46777778899999988876
No 112
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=93.65 E-value=0.63 Score=46.06 Aligned_cols=162 Identities=12% Similarity=0.107 Sum_probs=113.3
Q ss_pred hhcCchhHHHHHhcCCHHHHHHhhCCCC-----HHHHHHHHHHHHHhhC--CcchHHHHHHcCCHHHHHHHHccCCCHHH
Q 007520 333 LSGQRATIAKICDEVGLPKILQLLTSED-----PDVQIHAVKVVANLAA--EDINQEKIVEEGGLDALLLLLRTSQNTTI 405 (600)
Q Consensus 333 L~~~~~~~~~i~e~GgV~~Lv~LL~s~~-----~~vr~~Aa~aL~nLa~--~~~~~~~iv~~G~I~~Lv~lL~~~~~~~v 405 (600)
++.|++.+..++.+.-.--|..+|+..+ +.+|-.+.++++.|.. +++.-.-+.+.+.||..+..+. ..++--
T Consensus 83 vAshpetr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime-~GselS 161 (268)
T 2fv2_A 83 VASHPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIME-SGSELS 161 (268)
T ss_dssp HHHCTTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHH-HSCHHH
T ss_pred HHcCcchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHh-hccHHH
Confidence 5679999999999986555557775332 5689999999999997 3334555668889999999998 446667
Q ss_pred HHHHHHHHHHhhcCCccHHHHHH--------hCchhhhHhhhccCCCHHHHHHHHHHHHHHhCCchhHHHHHH-------
Q 007520 406 LRVASGAIANLAMNEMNQGLIMS--------RGGGQLLAKTASKTDDPQTLRMVAGALANLCGNEKLHTMLEE------- 470 (600)
Q Consensus 406 ~~~Al~aL~NLa~~~~~r~~I~~--------~G~I~~Lv~lL~~~~~~~v~~~Aa~aL~nLa~~~e~r~~i~~------- 470 (600)
+..|...+..+-.++.+-.-+.. ..++..++..+...+++.+.+.++++-..|+.++..+..+..
T Consensus 162 KtvAtfIlqKIL~dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~rar~aL~~~LP~~Lr 241 (268)
T 2fv2_A 162 KTVATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPRAREALRQCLPDQLK 241 (268)
T ss_dssp HHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSHHHHHHHHHHSCGGGT
T ss_pred HHHHHHHHHHHhccchhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCHHHHHHHHHhCcHHhh
Confidence 77888888888776554443332 123444455455568889999999999999999999887764
Q ss_pred cChHHHHHHHHcCCCHHHHHHHHHHHHHh
Q 007520 471 DGAIKALLAMVRSGNIDVIAQVARGLANF 499 (600)
Q Consensus 471 ~G~i~~Lv~lL~s~~~~v~~~A~~aL~nL 499 (600)
.|.+.. ++ .+|+.++..-...+.|+
T Consensus 242 d~tf~~---~l-~~D~~~k~~l~qLl~n~ 266 (268)
T 2fv2_A 242 DTTFAQ---VL-KDDTTTKRWLAQLVKNL 266 (268)
T ss_dssp SSTTHH---HH-TSCHHHHHHHHHHHHHS
T ss_pred ChHHHH---HH-hcCHHHHHHHHHHHHhc
Confidence 222222 22 35676666666666555
No 113
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=93.51 E-value=1.9 Score=41.85 Aligned_cols=157 Identities=14% Similarity=0.154 Sum_probs=96.6
Q ss_pred hhcCchhH-HHHHhcCCHHHHHHhhCC----C-------CHHHHHHHHHHHHHhhCCcchHHHHHH-cCCHHHHHHHHcc
Q 007520 333 LSGQRATI-AKICDEVGLPKILQLLTS----E-------DPDVQIHAVKVVANLAAEDINQEKIVE-EGGLDALLLLLRT 399 (600)
Q Consensus 333 L~~~~~~~-~~i~e~GgV~~Lv~LL~s----~-------~~~vr~~Aa~aL~nLa~~~~~~~~iv~-~G~I~~Lv~lL~~ 399 (600)
|..++... ..| ..||+..|+.+|.. + +...+..++.||..+..+......+.. .+++..|+..|.
T Consensus 29 Lrt~~~~Wv~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~- 106 (233)
T 2f31_A 29 LNNNPVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMD- 106 (233)
T ss_dssp HHHSCHHHHHHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTSSHHHHHHHHTSSSHHHHHHTTCC-
T ss_pred HhcCCcHHHHHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhCChHHHHHHHcCcHHHHHHHHHhC-
Confidence 55554444 445 67898888877731 1 345677889999999887766666664 556888887776
Q ss_pred CCCHHHHHHHHHHHHHhhcCCc--c-HHHHHHh----------CchhhhHhhhccCCCHHHHHHHHHHHHHHhCCc---h
Q 007520 400 SQNTTILRVASGAIANLAMNEM--N-QGLIMSR----------GGGQLLAKTASKTDDPQTLRMVAGALANLCGNE---K 463 (600)
Q Consensus 400 ~~~~~v~~~Al~aL~NLa~~~~--~-r~~I~~~----------G~I~~Lv~lL~~~~~~~v~~~Aa~aL~nLa~~~---e 463 (600)
++++.++..++..|+.+|..+. + ...+.++ .-+.+++..+....+.+....+...+-.+...+ +
T Consensus 107 s~~~~~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li~~~~dl~ 186 (233)
T 2f31_A 107 PAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELD 186 (233)
T ss_dssp TTSHHHHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHH
T ss_pred CCCchHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcCChHHHHHHHHHHHHHHHCCCCCHH
Confidence 7788899999999999998743 5 5555442 245567777755445444444333333333332 2
Q ss_pred h----HHHHHHcChHHHHHHHHcCCCHHHHHH
Q 007520 464 L----HTMLEEDGAIKALLAMVRSGNIDVIAQ 491 (600)
Q Consensus 464 ~----r~~i~~~G~i~~Lv~lL~s~~~~v~~~ 491 (600)
. |..+...|..+.+-.+=...++.+..+
T Consensus 187 ~R~~lR~ef~~~Gl~~il~~l~~~~~~~L~~Q 218 (233)
T 2f31_A 187 FRVHIRSELMRLGLHQVLQELREIENEDMKVQ 218 (233)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHCCCHHHHHH
T ss_pred HHHHHHHHHHHCChHHHHHHHhccCCHHHHHH
Confidence 3 334445565555544434556654433
No 114
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=93.50 E-value=1.4 Score=43.46 Aligned_cols=146 Identities=14% Similarity=0.075 Sum_probs=92.9
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhhCC--cc--hHH--HHHHcCCHHHHHHH-HccCCCHHHHHHHHHHHHHhhcCCcc
Q 007520 350 PKILQLLTSEDPDVQIHAVKVVANLAAE--DI--NQE--KIVEEGGLDALLLL-LRTSQNTTILRVASGAIANLAMNEMN 422 (600)
Q Consensus 350 ~~Lv~LL~s~~~~vr~~Aa~aL~nLa~~--~~--~~~--~iv~~G~I~~Lv~l-L~~~~~~~v~~~Al~aL~NLa~~~~~ 422 (600)
+.+-..+.+.|..++..++.+|..++.. .. .+. ...-...++.|+.= |. +....++..+..+|..++.....
T Consensus 58 ~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lveK~l~-~~k~~~~~~a~~~l~~~~~~~~~ 136 (278)
T 4ffb_C 58 TLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKNAHNITLISTWTPLLVEKGLT-SSRATTKTQSMSCILSLCGLDTS 136 (278)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHHHHTSS-CCCHHHHHHHHHHHHHHHHTSSS
T ss_pred HHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHhc-CccHHHHHHHHHHHHHHHHhcCc
Confidence 3344677888999999999999987752 11 111 12222356777754 44 56777888888888877654322
Q ss_pred HHHHHHhCchhhhHhhhccCCCHHHHHHHHHHHHHHhC---CchhHHHHHHcChHHHHHHHHcCCCHHHHHHHHHHHHHh
Q 007520 423 QGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLCG---NEKLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANF 499 (600)
Q Consensus 423 r~~I~~~G~I~~Lv~lL~~~~~~~v~~~Aa~aL~nLa~---~~e~r~~i~~~G~i~~Lv~lL~s~~~~v~~~A~~aL~nL 499 (600)
... ++..++..+. +.+|.++..++.+|..+.. ....-....-..+++.+..++.+.++.||..|..++..+
T Consensus 137 ~~~-----~~e~l~~~l~-~Knpkv~~~~l~~l~~~l~~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~l 210 (278)
T 4ffb_C 137 ITQ-----SVELVIPFFE-KKLPKLIAAAANCVYELMAAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEI 210 (278)
T ss_dssp SHH-----HHHHHGGGGG-CSCHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred HHH-----HHHHHHHHHh-ccCHHHHHHHHHHHHHHHHHhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 222 2345556663 5789999888888877642 111111111113455677788999999999999999988
Q ss_pred hcC
Q 007520 500 AKC 502 (600)
Q Consensus 500 a~~ 502 (600)
-..
T Consensus 211 y~~ 213 (278)
T 4ffb_C 211 YKV 213 (278)
T ss_dssp HTC
T ss_pred HHH
Confidence 654
No 115
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=93.48 E-value=1.2 Score=46.85 Aligned_cols=156 Identities=15% Similarity=0.126 Sum_probs=103.8
Q ss_pred HHHHHcCCHHHHHHHHccC----------CCHHHHHHHHHHHHHhhcCCccHHHHHH-hCchhhhHhhhccCCCHHHHHH
Q 007520 382 EKIVEEGGLDALLLLLRTS----------QNTTILRVASGAIANLAMNEMNQGLIMS-RGGGQLLAKTASKTDDPQTLRM 450 (600)
Q Consensus 382 ~~iv~~G~I~~Lv~lL~~~----------~~~~v~~~Al~aL~NLa~~~~~r~~I~~-~G~I~~Lv~lL~~~~~~~v~~~ 450 (600)
..|. .+|+..|+.+|... .+......++.||..|..+..+...++. .+++..|+..| .+..+.++..
T Consensus 42 ~~F~-~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalmN~~~Gl~~vl~~~~~i~~l~~sL-~s~~~~~r~~ 119 (386)
T 2bnx_A 42 QTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAM-DPAVPNMMID 119 (386)
T ss_dssp HHHH-HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTC-CTTSHHHHHH
T ss_pred HHHH-HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCCHHHHHHHHcCcHHHHHHHHHh-CCCCchHHHH
Confidence 3443 57888888877421 1345677799999999888777777766 67888888888 4678889999
Q ss_pred HHHHHHHHhCCch--h-HHHHHH----------cChHHHHHHHHc-CCCHHHHHHHHHHHHHhhcCCchhhhhcchhhHH
Q 007520 451 VAGALANLCGNEK--L-HTMLEE----------DGAIKALLAMVR-SGNIDVIAQVARGLANFAKCESRAIVQGQRKGRS 516 (600)
Q Consensus 451 Aa~aL~nLa~~~e--~-r~~i~~----------~G~i~~Lv~lL~-s~~~~v~~~A~~aL~nLa~~~~~~~~q~~~~~r~ 516 (600)
++..|..+|..+. + ...+.+ ...+..++..+. +.+......++..+-.|....++...+ -..|.
T Consensus 120 vleLL~alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~~~~dl~~R--~~LR~ 197 (386)
T 2bnx_A 120 AAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFR--VHIRS 197 (386)
T ss_dssp HHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHHH--HHHHH
T ss_pred HHHHHHHHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHcCChHHHHHHHHHHHHHHHCCCCCHHHH--HHHHH
Confidence 9988888886543 4 433332 235566888876 556666666666666666444432222 34677
Q ss_pred HHHhCCcHHHHHHhhcCCCHHHHHH
Q 007520 517 HLMEDSALEWLIANSKTNSASTRRH 541 (600)
Q Consensus 517 ~l~e~g~l~~Lv~Ll~s~~~~v~~~ 541 (600)
.|...|..+.|-.+-...++.+...
T Consensus 198 Ef~~~GL~~il~~Lr~~~~~~L~~Q 222 (386)
T 2bnx_A 198 ELMRLGLHQVLQELREIENEDMKVQ 222 (386)
T ss_dssp HHHHTTHHHHHHHHTTCCCHHHHHH
T ss_pred HHHHCChHHHHHHHhccCChhHHHH
Confidence 7888888777766655566665444
No 116
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=93.29 E-value=0.085 Score=34.93 Aligned_cols=30 Identities=23% Similarity=0.320 Sum_probs=27.2
Q ss_pred HHHHHHhHHHHHHHhhhHHHHHHHHHhhhh
Q 007520 105 MRNLVTRSEFLEKENAHLELEVEKILGELN 134 (600)
Q Consensus 105 ~~~l~~~~~~~~~e~~~~~~~~~~~~~~~~ 134 (600)
+.+|+.++|+|..+|++|+.|+.||++-++
T Consensus 3 MnQLEdkVEeLl~~~~~Le~eV~RL~~ll~ 32 (34)
T 2hy6_A 3 VKQLADAVEELASANYHLANAVARLAKAVG 32 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 579999999999999999999999987654
No 117
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=93.24 E-value=2.2 Score=56.04 Aligned_cols=177 Identities=14% Similarity=0.145 Sum_probs=76.6
Q ss_pred HHhHHHHHHHHHHh----------HHHHHHHHhhhccHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhch
Q 007520 17 SLCRKLETQVDHLT----------AEIERKQKLRENDKCELEKLLRECQISYDEAKDNLVTQVELLTAKIEMQQKLREND 86 (600)
Q Consensus 17 ~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (600)
.-.+||++=|+||. .|.+.++...+.-..|.++.+.+....-.+|++. +++++..+.+++.|.......
T Consensus 1917 ~~~~rl~~GL~KL~et~~~V~~l~~~L~~~~~~L~~k~~ea~~~l~~i~~~~~~ae~~-k~~v~~~~~~~~~~~~ei~~~ 1995 (3245)
T 3vkg_A 1917 EEQLHLNIGLKKLRDTEAQVKDLQVSLAQKNRELDVKNEQANQKLKQMVQDQQAAEIK-QKDARELQVQLDVRNKEIAVQ 1995 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 33456666666663 2333333333222233333333333333344432 235566666666666655555
Q ss_pred hHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHhhhHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHhhhhhhhhhhhhhH
Q 007520 87 KYEFEKQLRESQISYDESMRNLVTRSEFLEKENAHLELEVEKILGELNHQKDQNNLKREKIVQLEISLKNSKQYEMENST 166 (600)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~ 166 (600)
+..-|++|.+..=- +=++.+...++.++...+..++ ...++...++-++...+....+...
T Consensus 1996 k~~~e~dL~~A~Pa------------~Pkr~~l~~ae~~l~~~~~~L~-------~~~~~L~~le~~l~~L~~~~~~~~~ 2056 (3245)
T 3vkg_A 1996 KVKAYADLEKAEPT------------GPLREEVEQLENAANELKLKQD-------EIVATITALEKSIATYKEEYATLIR 2056 (3245)
T ss_dssp HHHHHHCC-------------------CHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcCCC------------ChHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555543311 1112222222222222222222 2223333333333333333333333
Q ss_pred HhhhhhhhhhhhHHHHH---HHHHHhHhHHHhhhhhHHHHHH-HHHHHhhh
Q 007520 167 YQKALADTTQLYEKKIA---ELNKKLEDEHACFEGAVEQLDM-VKKLLSDY 213 (600)
Q Consensus 167 ~~~~l~~~~~~~~~~~~---~l~~~l~~e~~~~~~~~~~~~~-~~~~~~~~ 213 (600)
-...|.+.+...+.++. .|.+-|.+|..|=.....++.. +++|..|+
T Consensus 2057 ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW~~~~~~l~~~~~~L~GD~ 2107 (3245)
T 3vkg_A 2057 ETEQIKTESSKVKNKVDRSIALLDNLNSERGRWEQQSENFNTQMSTVVGDV 2107 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHhccHHH
Confidence 33344444444444433 4566677787777777666665 56655543
No 118
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=93.14 E-value=1 Score=40.02 Aligned_cols=68 Identities=18% Similarity=0.246 Sum_probs=48.3
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHhhhHHHHHHH
Q 007520 53 ECQISYDEAKDNLVTQVELLTAKIEMQQKLRENDKYEFEKQLRESQISYDESMRNLVTRSEFLEKENAHLELEVEK 128 (600)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~e~~~~~~~~~~ 128 (600)
-++..|+|..+ .|..|.++++...... ..||..++.....|...+..+..++..|+.+..++..+|.+
T Consensus 35 ~~k~Ei~elrr----~iq~L~~el~~l~~~~----~sLE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~em~~ 102 (131)
T 3tnu_A 35 SGKSEISELRR----TMQNLEIELQSQLSMK----ASLENSLEETKGRYCMQLAQIQEMIGSVEEQLAQLRCEMEQ 102 (131)
T ss_dssp ------CHHHH----HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHhhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666 6667777777776665 89999999999999999999988887666666666666666
No 119
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=92.96 E-value=0.2 Score=54.96 Aligned_cols=188 Identities=13% Similarity=0.040 Sum_probs=118.1
Q ss_pred HHHHHHHHHHHHHhhC-CcchHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcCCccHHHHHHhCchhhhHhhh
Q 007520 361 PDVQIHAVKVVANLAA-EDINQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMNEMNQGLIMSRGGGQLLAKTA 439 (600)
Q Consensus 361 ~~vr~~Aa~aL~nLa~-~~~~~~~iv~~G~I~~Lv~lL~~~~~~~v~~~Al~aL~NLa~~~~~r~~I~~~G~I~~Lv~lL 439 (600)
..||+.|+++|+.+ . -++. ..++..|+..+. .+.=+++..++..|..+..- ... =.++++.++..|
T Consensus 242 APVRETaAQtLGaL-~hLp~e------~~IL~qLV~~l~-~~~WEVRHGGLLGLKYL~DL--L~~---Ld~Vv~aVL~GL 308 (800)
T 3oc3_A 242 APVRDAAAYLLSRI-YPLIGP------NDIIEQLVGFLD-SGDWQVQFSGLIALGYLKEF--VED---KDGLCRKLVSLL 308 (800)
T ss_dssp CHHHHHHHHHHHHH-TTTSCS------CCHHHHHTTGGG-CSCHHHHHHHHHHHHHTGGG--CCC---HHHHHHHHHHHT
T ss_pred eehHHHHHHHHHHH-HhCChh------HHHHHHHHhhcC-CCCeeehhhhHHHHHHHHHH--HHH---HHHHHHHHHhhc
Confidence 68999999999999 5 2222 334555554444 55667888888889988111 110 145677788888
Q ss_pred ccCCCHHHHHHHHHHHHHHhCCchhHHHHHHcChHHHHHHHHcC-CCH-HHHHHHHHHHHHhhcCCchhhhhcchhhHHH
Q 007520 440 SKTDDPQTLRMVAGALANLCGNEKLHTMLEEDGAIKALLAMVRS-GNI-DVIAQVARGLANFAKCESRAIVQGQRKGRSH 517 (600)
Q Consensus 440 ~~~~~~~v~~~Aa~aL~nLa~~~e~r~~i~~~G~i~~Lv~lL~s-~~~-~v~~~A~~aL~nLa~~~~~~~~q~~~~~r~~ 517 (600)
.+ .+.+|+..|+.+|..++ .++... ..+..+-..|.+ +|. .-.......|+.|+...+.+.
T Consensus 309 ~D-~DDDVRAVAAetLiPIA-~p~~l~-----~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~a~---------- 371 (800)
T 3oc3_A 309 SS-PDEDIKLLSAELLCHFP-ITDSLD-----LVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPELS---------- 371 (800)
T ss_dssp TC-SSHHHHHHHHHHHTTSC-CSSTHH-----HHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTTCC----------
T ss_pred CC-cccHHHHHHHHHhhhhc-chhhHH-----HHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcccc----------
Confidence 65 56799999999999888 222211 233344444432 221 123345677777776543211
Q ss_pred HHhCCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCchhHHHHHHcccHHHHHHhhhcCChHHHHHHHHHHHh
Q 007520 518 LMEDSALEWLIANSKTNSASTRRHVELALCHLAQNEDNARDFISRGGAKELVQISIESSREDIRNLAKKTMK 589 (600)
Q Consensus 518 l~e~g~l~~Lv~Ll~s~~~~v~~~Aa~aL~nLa~~~~~~~~lv~~G~l~~Lv~ll~~~~~~~ir~~A~~~L~ 589 (600)
.+...+|.|.+.+++.-..||..+..+|..+. ...++..+.+-+--...+++++.+.++..
T Consensus 372 -~dp~LVPRL~PFLRHtITSVR~AVL~TL~tfL----------~~~~LRLIFQNILLE~neeIl~lS~~VWk 432 (800)
T 3oc3_A 372 -IPPERLKDIFPCFTSPVPEVRTSILNMVKNLS----------EESIDFLVAEVVLIEEKDEIREMAIKLLK 432 (800)
T ss_dssp -CCSGGGGGTGGGGTCSSHHHHHHHHHHTTTCC----------CHHHHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred -cChHHHHHHHhhhcCCcHHHHHHHHHHHHHHH----------hhhHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 12378999999999999999999999998877 11223333222223345678777776664
No 120
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=92.93 E-value=2.1 Score=44.28 Aligned_cols=106 Identities=14% Similarity=0.156 Sum_probs=78.0
Q ss_pred HHHHhHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHhhhHHHH
Q 007520 26 VDHLTAEIERKQKLRENDKCELEKLLRECQISYDEAKDNLVTQVELLTAKIEMQQKLRENDKYEFEKQLRESQISYDESM 105 (600)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (600)
|..++.+.+|-.+.+= ++|...+.+-+....+.-. |.+.+.++=.+-+.|+.+-+|-..++-.+|++....-.+-|
T Consensus 54 Lqg~Ldk~er~~~~rI---e~L~~~L~~~s~s~~~~~~-y~~~~~~~lk~~~~q~~dndn~~~e~s~eLe~~i~~lk~~V 129 (390)
T 1deq_A 54 MKGLIDEVDQDFTSRI---NKLRDSLFNYQKNSKDSNT-LTKNIVELMRGDFAKANNNDNTFKQINEDLRSRIEILRRKV 129 (390)
T ss_pred HHHHHHHhhhhHHHHH---HHHHHHHHHHHHhhhHHHH-HHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555554444443 5566666666665555544 55577777778888888888888899999988887777888
Q ss_pred HHHHHhHHHHHHHhhhHHHHHHHHHhhhhh
Q 007520 106 RNLVTRSEFLEKENAHLELEVEKILGELNH 135 (600)
Q Consensus 106 ~~l~~~~~~~~~e~~~~~~~~~~~~~~~~~ 135 (600)
.+-...+..|+.-.+++..+|++|...|.-
T Consensus 130 ~~q~~~ir~Lq~~l~~q~~kiqRLE~~Id~ 159 (390)
T 1deq_A 130 IEQVQRINLLQKNVRDQLVDMKRLEVDIDI 159 (390)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777778888999999999999999998843
No 121
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=92.90 E-value=1.3 Score=39.25 Aligned_cols=68 Identities=10% Similarity=0.173 Sum_probs=50.7
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHhhhHHHHHHH
Q 007520 53 ECQISYDEAKDNLVTQVELLTAKIEMQQKLRENDKYEFEKQLRESQISYDESMRNLVTRSEFLEKENAHLELEVEK 128 (600)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~e~~~~~~~~~~ 128 (600)
.++..|+|..+ .|..|.++++...... .+||+.+......|...+..+..++..|+.+..++..+|.+
T Consensus 33 ~~k~Ei~elrr----~iq~L~~el~~l~~~~----~~LE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~e~~~ 100 (129)
T 3tnu_B 33 NTKHEISEMNR----MIQRLRAEIDNVKKQC----ANLQNAIADAEQRGELALKDARNKLAELEEALQKAKQDMAR 100 (129)
T ss_dssp -CHHHHHHHHH----HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHhHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 34445666666 5667777777776665 89999999999999999999988887666666666666666
No 122
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=92.87 E-value=5.5 Score=36.31 Aligned_cols=40 Identities=25% Similarity=0.329 Sum_probs=32.4
Q ss_pred hhhhhHHHHHHHHHHhHhHHHhhhhhHHHHHHHHHHHhhh
Q 007520 174 TTQLYEKKIAELNKKLEDEHACFEGAVEQLDMVKKLLSDY 213 (600)
Q Consensus 174 ~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~~~~~~~~~~~ 213 (600)
--..|+.+|..|+.+|+.--+|.+.|+-.+..|++-+.++
T Consensus 71 rEd~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk~id~l 110 (155)
T 2efr_A 71 KEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDL 110 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467999999999999988899888988888866555544
No 123
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=92.86 E-value=2.4 Score=44.47 Aligned_cols=155 Identities=15% Similarity=0.161 Sum_probs=98.3
Q ss_pred hhcCchhH-HHHHhcCCHHHHHHhhC-----------CCCHHHHHHHHHHHHHhhCCcchHHHHHH-cCCHHHHHHHHcc
Q 007520 333 LSGQRATI-AKICDEVGLPKILQLLT-----------SEDPDVQIHAVKVVANLAAEDINQEKIVE-EGGLDALLLLLRT 399 (600)
Q Consensus 333 L~~~~~~~-~~i~e~GgV~~Lv~LL~-----------s~~~~vr~~Aa~aL~nLa~~~~~~~~iv~-~G~I~~Lv~lL~~ 399 (600)
|..++... ..|+ .+|+..|+.+|. ..+...+..++.||..+..+......++. ..++..|+..|.
T Consensus 95 Lrt~~~sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN~~~G~~~vl~~~~~i~~l~~~L~- 172 (383)
T 3eg5_B 95 LTSHPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMD- 172 (383)
T ss_dssp HHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTSSHHHHHHHHTCSSHHHHHHHTCC-
T ss_pred HhhCccHHHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhcchhhHHHHHcChHHHHHHHHHhC-
Confidence 55555443 5565 788999987773 22456778899999999887666666664 556888888877
Q ss_pred CCCHHHHHHHHHHHHHhhcCCc--c-HHHHHHh----------CchhhhHhhhccCCCHHHHHHHHHHHHHHhCC-c--h
Q 007520 400 SQNTTILRVASGAIANLAMNEM--N-QGLIMSR----------GGGQLLAKTASKTDDPQTLRMVAGALANLCGN-E--K 463 (600)
Q Consensus 400 ~~~~~v~~~Al~aL~NLa~~~~--~-r~~I~~~----------G~I~~Lv~lL~~~~~~~v~~~Aa~aL~nLa~~-~--e 463 (600)
++.+.++..++..|+.+|..+. + ...+.++ .-+.+++..|....+.+....+...+-.+... + +
T Consensus 173 s~~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~li~~~~dl~ 252 (383)
T 3eg5_B 173 PAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELD 252 (383)
T ss_dssp TTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHH
T ss_pred CCchHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHccCcHHHHHHHHHHHHHHHcCCCCHH
Confidence 6788899999999999998743 4 5555442 34777888886544545544443333333332 2 2
Q ss_pred h----HHHHHHcChHHHHHHHHc-CCCHHHHH
Q 007520 464 L----HTMLEEDGAIKALLAMVR-SGNIDVIA 490 (600)
Q Consensus 464 ~----r~~i~~~G~i~~Lv~lL~-s~~~~v~~ 490 (600)
. |..+...|..+.+-. |+ ..++.+..
T Consensus 253 ~R~~lR~ef~~~Gl~~il~~-lr~~~~~~L~~ 283 (383)
T 3eg5_B 253 FRVHIRSELMRLGLHQVLQE-LREIENEDMKV 283 (383)
T ss_dssp HHHHHHHHHHHTTHHHHHHH-HTTSCCHHHHH
T ss_pred HHHHHHHHHHHCChHHHHHH-HhcCCChhHHH
Confidence 3 334445666555554 54 45555443
No 124
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=92.82 E-value=2.9 Score=43.97 Aligned_cols=156 Identities=15% Similarity=0.165 Sum_probs=96.1
Q ss_pred hhcCchhH-HHHHhcCCHHHHHHhhC----C-------CCHHHHHHHHHHHHHhhCCcchHHHHHH-cCCHHHHHHHHcc
Q 007520 333 LSGQRATI-AKICDEVGLPKILQLLT----S-------EDPDVQIHAVKVVANLAAEDINQEKIVE-EGGLDALLLLLRT 399 (600)
Q Consensus 333 L~~~~~~~-~~i~e~GgV~~Lv~LL~----s-------~~~~vr~~Aa~aL~nLa~~~~~~~~iv~-~G~I~~Lv~lL~~ 399 (600)
|..++... ..| ..||+..|+.+|. . .+......++.||..+..+......+.. .+++..|+..|.
T Consensus 33 Lrt~~~~Wv~~F-~~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalmN~~~Gl~~vl~~~~~i~~l~~sL~- 110 (386)
T 2bnx_A 33 LNNNPVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMD- 110 (386)
T ss_dssp HHHSCHHHHHHH-HHHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTCC-
T ss_pred HhcCCcHHHHHH-HHhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCCHHHHHHHHcCcHHHHHHHHHhC-
Confidence 55555444 445 4788888887773 1 1456678889999999887666555554 566888888876
Q ss_pred CCCHHHHHHHHHHHHHhhcCCc--c-HHHHHHh----------CchhhhHhhhccCCCHHHHHHHHHHHHHHhCC-c--h
Q 007520 400 SQNTTILRVASGAIANLAMNEM--N-QGLIMSR----------GGGQLLAKTASKTDDPQTLRMVAGALANLCGN-E--K 463 (600)
Q Consensus 400 ~~~~~v~~~Al~aL~NLa~~~~--~-r~~I~~~----------G~I~~Lv~lL~~~~~~~v~~~Aa~aL~nLa~~-~--e 463 (600)
++++.++..++..|..+|..+. + ...+.++ .-+.+|+..+..+.+.+....+...+-.|... + +
T Consensus 111 s~~~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~~~~dl~ 190 (386)
T 2bnx_A 111 PAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELD 190 (386)
T ss_dssp TTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHH
T ss_pred CCCchHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHcCChHHHHHHHHHHHHHHHCCCCCHH
Confidence 6778888889999999998743 4 5554431 24556788876545545444333333333333 2 2
Q ss_pred h----HHHHHHcChHHHHHHHHc-CCCHHHHHH
Q 007520 464 L----HTMLEEDGAIKALLAMVR-SGNIDVIAQ 491 (600)
Q Consensus 464 ~----r~~i~~~G~i~~Lv~lL~-s~~~~v~~~ 491 (600)
. |..|...|..+.+ .-|+ ..++.+..+
T Consensus 191 ~R~~LR~Ef~~~GL~~il-~~Lr~~~~~~L~~Q 222 (386)
T 2bnx_A 191 FRVHIRSELMRLGLHQVL-QELREIENEDMKVQ 222 (386)
T ss_dssp HHHHHHHHHHHTTHHHHH-HHHTTCCCHHHHHH
T ss_pred HHHHHHHHHHHCChHHHH-HHHhccCChhHHHH
Confidence 3 3444455655554 4554 466655443
No 125
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=92.69 E-value=0.16 Score=33.41 Aligned_cols=30 Identities=17% Similarity=0.081 Sum_probs=27.1
Q ss_pred HHHHHHhHHHHHHHhhhHHHHHHHHHhhhh
Q 007520 105 MRNLVTRSEFLEKENAHLELEVEKILGELN 134 (600)
Q Consensus 105 ~~~l~~~~~~~~~e~~~~~~~~~~~~~~~~ 134 (600)
|.+|+.|+|+|-.+|++|+.|+.||++-+.
T Consensus 2 MnQLEdKVEell~~~~~le~EV~Rl~~ll~ 31 (33)
T 2wq1_A 2 MKQLEDKIEENTSKIYHNTNEIARNTKLVG 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred chHHHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 679999999999999999999999887653
No 126
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=92.42 E-value=0.12 Score=51.12 Aligned_cols=45 Identities=11% Similarity=0.130 Sum_probs=25.2
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHhhCCcchHHHHHHcCCHHHHHHHHccCCCHHHHHHHHH
Q 007520 349 LPKILQLLTSEDPDVQIHAVKVVANLAAEDINQEKIVEEGGLDALLLLLRTSQNTTILRVASG 411 (600)
Q Consensus 349 V~~Lv~LL~s~~~~vr~~Aa~aL~nLa~~~~~~~~iv~~G~I~~Lv~lL~~~~~~~v~~~Al~ 411 (600)
...|..++.++++.||..++..| ..+.|..++. +++..++..++.
T Consensus 76 ~~~l~~L~~D~~~~VR~~aA~~L-----------------~~~~L~~ll~-D~d~~VR~~aA~ 120 (244)
T 1lrv_A 76 VEALTPLIRDSDEVVRRAVAYRL-----------------PREQLSALMF-DEDREVRITVAD 120 (244)
T ss_dssp GGGGGGGTTCSSHHHHHHHHTTS-----------------CSGGGGGTTT-CSCHHHHHHHHH
T ss_pred HHHHHHHccCcCHHHHHHHHHHC-----------------CHHHHHHHHc-CCCHHHHHHHHH
Confidence 34445666677777777666532 1123344444 666777766655
No 127
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=92.33 E-value=0.21 Score=33.17 Aligned_cols=30 Identities=13% Similarity=0.189 Sum_probs=27.3
Q ss_pred HHHHHHhHHHHHHHhhhHHHHHHHHHhhhh
Q 007520 105 MRNLVTRSEFLEKENAHLELEVEKILGELN 134 (600)
Q Consensus 105 ~~~l~~~~~~~~~e~~~~~~~~~~~~~~~~ 134 (600)
+.+|+.|+|+|..+|.+|+.|+.||.+-+.
T Consensus 3 MnQledKvEel~~~~~~l~nEv~Rl~~lLg 32 (34)
T 2r2v_A 3 LKQVADKLEEVASKLYHNANELARVAKLLG 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHHhc
Confidence 679999999999999999999999987654
No 128
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=92.30 E-value=2.7 Score=36.62 Aligned_cols=91 Identities=30% Similarity=0.354 Sum_probs=53.8
Q ss_pred hHHHhHHHHHHHHHHhHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhchhHHHHHHH
Q 007520 15 YESLCRKLETQVDHLTAEIERKQKLRENDKCELEKLLRECQISYDEAKDNLVTQVELLTAKIEMQQKLRENDKYEFEKQL 94 (600)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (600)
|++--+-|-.++|.++.|+.|-.--++ |+...++.++.+|+.++..+ ...|+++
T Consensus 18 ye~~I~~LR~qid~~~~e~a~l~leld----------------------n~~~~~edfk~KyE~E~~~r----~~~E~di 71 (119)
T 3ol1_A 18 YEEEMRELRRQVDQLTNDKARVEVERD----------------------NLAEDIMRLREKLQEEMLQR----EEAENTL 71 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHHHHHHH----HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHhhHHHHHHH----HHHHHHH
Confidence 566666777777777777766554443 22234555556666666666 6677777
Q ss_pred HHHHhhhHHHH---HHHHHhHHHHHHHhh----hHHHHHHHHHh
Q 007520 95 RESQISYDESM---RNLVTRSEFLEKENA----HLELEVEKILG 131 (600)
Q Consensus 95 ~~~~~~~~~~~---~~l~~~~~~~~~e~~----~~~~~~~~~~~ 131 (600)
.-.+...|+.+ ..|+.+++.|..|.. ..+.||+.|..
T Consensus 72 ~~lrK~lD~~~l~r~dLE~~iesL~eEl~FLKk~heeEl~eLq~ 115 (119)
T 3ol1_A 72 QSFRQDVDNASLARLDLERKVESLQEEIAFLKKLHEEEIQELQA 115 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666665543 345666655555443 33556666544
No 129
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=91.99 E-value=0.63 Score=47.99 Aligned_cols=122 Identities=16% Similarity=0.201 Sum_probs=92.3
Q ss_pred Cch-hHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCcchHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHH
Q 007520 336 QRA-TIAKICDEVGLPKILQLLTSEDPDVQIHAVKVVANLAAEDINQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIA 414 (600)
Q Consensus 336 ~~~-~~~~i~e~GgV~~Lv~LL~s~~~~vr~~Aa~aL~nLa~~~~~~~~iv~~G~I~~Lv~lL~~~~~~~v~~~Al~aL~ 414 (600)
+++ .+.-++...||..+.....-++.++.+..++.|...+....-+..-.+ ..+|.++..+.-.++.++.....+.|+
T Consensus 272 HdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDaksL~~t~L~-e~LPFi~~~i~~h~eDdvvYSGTGFLS 350 (619)
T 3c2g_A 272 HDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDAKALAKTPLE-NILPFLLRLIEIHPDDEVIYSGTGFLS 350 (619)
T ss_dssp CSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTCGGGGTSCCT-THHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred cccccccceeecccceeEEEEeecCCcHHHHhhhheeeeecchHHHhhcccc-ccchHHHHHhccCCCcceEEecchHHH
Confidence 555 456689999999999999999999999999999987764433322222 257888888887888999999999999
Q ss_pred HhhcC-CccHHHHHHhCchhhhHhhhccC------CCHHHHHHHHHHHHHH
Q 007520 415 NLAMN-EMNQGLIMSRGGGQLLAKTASKT------DDPQTLRMVAGALANL 458 (600)
Q Consensus 415 NLa~~-~~~r~~I~~~G~I~~Lv~lL~~~------~~~~v~~~Aa~aL~nL 458 (600)
|...+ -..+..-+..|+|+.|...+..+ .+..-...||+.++|-
T Consensus 351 NVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN~ 401 (619)
T 3c2g_A 351 NVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICNC 401 (619)
T ss_dssp HHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHHH
T ss_pred HHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHHH
Confidence 99988 55666667789999988776543 3334456677766653
No 130
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=91.99 E-value=3.9 Score=40.75 Aligned_cols=174 Identities=13% Similarity=0.029 Sum_probs=107.0
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHhhC-CcchHHHHHHcCCHHHHHHHHc---cCCCHHHHHHHHHHHHHhhcC-----Cc
Q 007520 351 KILQLLTSEDPDVQIHAVKVVANLAA-EDINQEKIVEEGGLDALLLLLR---TSQNTTILRVASGAIANLAMN-----EM 421 (600)
Q Consensus 351 ~Lv~LL~s~~~~vr~~Aa~aL~nLa~-~~~~~~~iv~~G~I~~Lv~lL~---~~~~~~v~~~Al~aL~NLa~~-----~~ 421 (600)
.+...|-+.+..-+..|+..|..... ++ ..+.. .+..++.++. .+.+..+...++.+|..+... ..
T Consensus 50 ~~~~~lfs~d~k~~~~ale~L~~~l~~~~---~~~~~--~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~ 124 (266)
T 2of3_A 50 SLMSQLFHKDFKQHLAALDSLVRLADTSP---RSLLS--NSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETP 124 (266)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHHHHHCH---HHHHH--THHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhhhCh---HHHHH--HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhcccc
Confidence 44455556677777777777765432 22 22222 1333333321 145777777777777776421 11
Q ss_pred cHHHHHHhCchhhhHhhhccCCCHHHHHHHHHHHHHHhCCchhHHHHHHcChHHHHHHHHcCCCHHHHHHHHHHHHHhhc
Q 007520 422 NQGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLCGNEKLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFAK 501 (600)
Q Consensus 422 ~r~~I~~~G~I~~Lv~lL~~~~~~~v~~~Aa~aL~nLa~~~e~r~~i~~~G~i~~Lv~lL~s~~~~v~~~A~~aL~nLa~ 501 (600)
....-+ .-.+|.|+.-+.+ ....++..+-.++..|+.- .--...++.++.-+.+.+..++..++..+..+-.
T Consensus 125 ~~~~ea-~~~lP~LveKlGd-~k~~vR~~~r~il~~l~~v------~~~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~ 196 (266)
T 2of3_A 125 MSQEEV-SAFVPYLLLKTGE-AKDNMRTSVRDIVNVLSDV------VGPLKMTPMLLDALKSKNARQRSECLLVIEYYIT 196 (266)
T ss_dssp CCHHHH-HHHHHHHHHGGGC-SSHHHHHHHHHHHHHHHHH------HCHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred chHHHH-HHHHHHHHHHhCC-ChHHHHHHHHHHHHHHHHH------CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHH
Confidence 122111 2257888888754 4446766666666655421 1112355667777789999999999999998853
Q ss_pred CCchhhhhcchhhHHHHHhCCcH---HHHHHhhcCCCHHHHHHHHHHHHHhh
Q 007520 502 CESRAIVQGQRKGRSHLMEDSAL---EWLIANSKTNSASTRRHVELALCHLA 550 (600)
Q Consensus 502 ~~~~~~~q~~~~~r~~l~e~g~l---~~Lv~Ll~s~~~~v~~~Aa~aL~nLa 550 (600)
.. |-. -..++ |.+..++.+.|..||..|..++..+-
T Consensus 197 ~~----------G~~---~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y 235 (266)
T 2of3_A 197 NA----------GIS---PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACF 235 (266)
T ss_dssp HH----------CSG---GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHH
T ss_pred hc----------CCC---ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 21 111 23478 99999999999999999999998763
No 131
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=91.78 E-value=7.4 Score=35.34 Aligned_cols=32 Identities=16% Similarity=0.175 Sum_probs=27.0
Q ss_pred hhhhhHHHHHHHHHHhHhHHHhhhhhHHHHHH
Q 007520 174 TTQLYEKKIAELNKKLEDEHACFEGAVEQLDM 205 (600)
Q Consensus 174 ~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~~~ 205 (600)
....+..++..|...+..|.+++..++.+...
T Consensus 52 ~~~~~~~e~~~L~~~l~~E~~~R~~aE~~~~~ 83 (154)
T 2ocy_A 52 ELSDRDDEVKRLREDIAKENELRTKAEEEADK 83 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567888999999999999999999888777
No 132
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=91.48 E-value=3.5 Score=49.11 Aligned_cols=19 Identities=26% Similarity=0.261 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 007520 45 CELEKLLRECQISYDEAKD 63 (600)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~ 63 (600)
.++|..+.|-+.++.+.++
T Consensus 924 ~~LE~kl~eLq~rL~~~e~ 942 (1080)
T 2dfs_A 924 IGLENKIMQLQRKIDEQNK 942 (1080)
T ss_dssp -------------------
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555444
No 133
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=91.39 E-value=2.3 Score=49.81 Aligned_cols=134 Identities=9% Similarity=-0.044 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHHhhCCcchHHHHHHcCCHHHHHHHHcc-----CCCHHHHHHHHHHHHHhhcCCccHHHHHHh-----Cc
Q 007520 362 DVQIHAVKVVANLAAEDINQEKIVEEGGLDALLLLLRT-----SQNTTILRVASGAIANLAMNEMNQGLIMSR-----GG 431 (600)
Q Consensus 362 ~vr~~Aa~aL~nLa~~~~~~~~iv~~G~I~~Lv~lL~~-----~~~~~v~~~Al~aL~NLa~~~~~r~~I~~~-----G~ 431 (600)
..|..|..+|..|+..-+ ..++.. .++.+...+.. +++-..++.|+.++..++.....+..-+.. ..
T Consensus 376 s~R~aa~~~L~~l~~~~~--~~v~~~-~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l 452 (960)
T 1wa5_C 376 TRRRACTDFLKELKEKNE--VLVTNI-FLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNV 452 (960)
T ss_dssp CHHHHHHHHHHHHHHHCH--HHHHHH-HHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCH
T ss_pred CcHHHHHHHHHHHHHHcc--hhHHHH-HHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCcccccccccH
Confidence 467788888888886322 122211 22333333331 334567888999999997531100000000 11
Q ss_pred hh----hhHhhhccC--CCHHHHHHHHHHHHHHhCCchhHHHHHHcChHHHHHHHHcCCCHHHHHHHHHHHHHhhc
Q 007520 432 GQ----LLAKTASKT--DDPQTLRMVAGALANLCGNEKLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFAK 501 (600)
Q Consensus 432 I~----~Lv~lL~~~--~~~~v~~~Aa~aL~nLa~~~e~r~~i~~~G~i~~Lv~lL~s~~~~v~~~A~~aL~nLa~ 501 (600)
.+ .++..|.+. .+|-++..|+++|+.++..- .... -...++.++..|.+.++.|+..|+++|.+|+.
T Consensus 453 ~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~--~~~~-l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~ 525 (960)
T 1wa5_C 453 VDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQL--TKAQ-LIELMPILATFLQTDEYVVYTYAAITIEKILT 525 (960)
T ss_dssp HHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGS--CHHH-HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhC--CHHH-HHHHHHHHHHHhCCCChhHHHHHHHHHHHHHh
Confidence 11 233334332 27889999999999998541 1111 23467788888888889999999999999986
No 134
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=91.10 E-value=8.8 Score=34.93 Aligned_cols=76 Identities=29% Similarity=0.361 Sum_probs=50.3
Q ss_pred HHHHHHHhhhchhHHHHHHHHHHH---hhhHHHHHHH-------HHhHHHHHHHhhhHHHHHHHHHhhhhhhhhhhhhHH
Q 007520 75 KIEMQQKLRENDKYEFEKQLRESQ---ISYDESMRNL-------VTRSEFLEKENAHLELEVEKILGELNHQKDQNNLKR 144 (600)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l-------~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (600)
.++.+.+...+.+..||.-=.++. ..|.+.|+.| +++.+|-++.-..|+.++++|...|...|.....++
T Consensus 46 eLEeeL~~v~~nlKsLE~seekasqrEd~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk~id~lEd~L~~~Kek~~~i~ 125 (155)
T 2efr_A 46 ELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAIS 125 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555554333222 2455555555 556668889999999999999999988888777766
Q ss_pred HHHHHH
Q 007520 145 EKIVQL 150 (600)
Q Consensus 145 ~~~~~~ 150 (600)
+...+.
T Consensus 126 ~eLd~t 131 (155)
T 2efr_A 126 EEMKQL 131 (155)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 665543
No 135
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=90.95 E-value=4.3 Score=43.72 Aligned_cols=121 Identities=12% Similarity=0.067 Sum_probs=91.1
Q ss_pred CCHHHHHHHHHHHHHhhcC-CccHHHHHHhCchhhhHhhhccCCCHHHHHHHHHHHHHHhCCchhHHHHHHcChHHHHHH
Q 007520 401 QNTTILRVASGAIANLAMN-EMNQGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLCGNEKLHTMLEEDGAIKALLA 479 (600)
Q Consensus 401 ~~~~v~~~Al~aL~NLa~~-~~~r~~I~~~G~I~~Lv~lL~~~~~~~v~~~Aa~aL~nLa~~~e~r~~i~~~G~i~~Lv~ 479 (600)
.+...++.|+..+.....+ |+.... +|..++.++. ..+..++..|+..|..+|.+ ++... ++..|++
T Consensus 40 g~~k~K~LaaQ~I~kffk~FP~l~~~-----Ai~a~lDLcE-Ded~~IR~qaik~Lp~~ck~-~~i~k-----iaDvL~Q 107 (507)
T 3u0r_A 40 GGTKEKRLAAQFIPKFFKHFPELADS-----AINAQLDLCE-DEDVSIRRQAIKELPQFATG-ENLPR-----VADILTQ 107 (507)
T ss_dssp SCHHHHHHHHHHHHHHGGGCGGGHHH-----HHHHHHHHHT-CSSHHHHHHHHHHGGGGCCT-TCHHH-----HHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHh-cccHHHHHHHHHhhHHHhhh-hhhhh-----HHHHHHH
Confidence 3577888899888888776 777665 5667888884 47889999999999999988 54443 5568999
Q ss_pred HHcCCCHHHHHHHHHHHHHhhcCCchhhhhcchhhHHHHHhCCcHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 007520 480 MVRSGNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSKTNSASTRRHVELALCHL 549 (600)
Q Consensus 480 lL~s~~~~v~~~A~~aL~nLa~~~~~~~~q~~~~~r~~l~e~g~l~~Lv~Ll~s~~~~v~~~Aa~aL~nL 549 (600)
+|..+++.-...+-.+|..|-..+|. |.+..|...+.++++.+|..+...|+.=
T Consensus 108 lLqtdd~~E~~~V~~sL~sllk~Dpk----------------~tl~~lf~~i~~~~e~~Rer~lkFi~~k 161 (507)
T 3u0r_A 108 LLQTDDSAEFNLVNNALLSIFKMDAK----------------GTLGGLFSQILQGEDIVRERAIKFLSTK 161 (507)
T ss_dssp HTTCCCHHHHHHHHHHHHHHHHHCHH----------------HHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHhccchHHHHHHHHHHHHHHhcChH----------------HHHHHHHHHHcccchHHHHHHHHHHHHH
Confidence 99999988888888888888765532 4555566655557788888877777443
No 136
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=90.46 E-value=4.8 Score=47.10 Aligned_cols=181 Identities=11% Similarity=0.115 Sum_probs=98.7
Q ss_pred HhhCCC---CHHHHHHHHHHHHHhhCCcchHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcCC--------c-
Q 007520 354 QLLTSE---DPDVQIHAVKVVANLAAEDINQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMNE--------M- 421 (600)
Q Consensus 354 ~LL~s~---~~~vr~~Aa~aL~nLa~~~~~~~~iv~~G~I~~Lv~lL~~~~~~~v~~~Al~aL~NLa~~~--------~- 421 (600)
..|.++ .+-+|..|+++|+.++..- .. ..... .++.++..|. +++..++..|+.||.+++... .
T Consensus 462 p~l~~~~~~~p~vr~~a~~~lg~~~~~~-~~-~~l~~-~l~~l~~~L~-d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~ 537 (960)
T 1wa5_C 462 PDLTSNNIPHIILRVDAIKYIYTFRNQL-TK-AQLIE-LMPILATFLQ-TDEYVVYTYAAITIEKILTIRESNTSPAFIF 537 (960)
T ss_dssp HHHHCSSCSCHHHHHHHHHHHHHTGGGS-CH-HHHHH-HHHHHHHHTT-CSCHHHHHHHHHHHHHHTTCBSCSSSCCBSS
T ss_pred HHhcCCCCCCceehHHHHHHHHHHHhhC-CH-HHHHH-HHHHHHHHhC-CCChhHHHHHHHHHHHHHhcccccccccccc
Confidence 334555 8999999999999988631 12 22222 5777888887 567889999999999998752 1
Q ss_pred cHHHHHH--hCchhhhHhhhccCC-CH-H--HHHHHHHHHHHHhC--CchhHHHHHHcChHHHHHHHH----c-CCCHHH
Q 007520 422 NQGLIMS--RGGGQLLAKTASKTD-DP-Q--TLRMVAGALANLCG--NEKLHTMLEEDGAIKALLAMV----R-SGNIDV 488 (600)
Q Consensus 422 ~r~~I~~--~G~I~~Lv~lL~~~~-~~-~--v~~~Aa~aL~nLa~--~~e~r~~i~~~G~i~~Lv~lL----~-s~~~~v 488 (600)
.+..+.. ...++.|+.++.... .| . ....+..+|..++. .+.....+ . ..++.|+..+ + ..++..
T Consensus 538 ~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~-~-~l~~~L~~~l~~~~~~~~~~~~ 615 (960)
T 1wa5_C 538 HKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLF-P-QLLAQFIEIVTIMAKNPSNPRF 615 (960)
T ss_dssp CGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGH-H-HHHHHHHHHHHHHTTSCCCHHH
T ss_pred cHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHH-H-HHHHHHHHHHHHHHhCCCCcHH
Confidence 2222222 234555556664421 01 1 22344445554431 12222211 1 2334444444 2 356677
Q ss_pred HHHHHHHHHHhhcC-CchhhhhcchhhHHHHHhCCcHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 007520 489 IAQVARGLANFAKC-ESRAIVQGQRKGRSHLMEDSALEWLIANSKTNSASTRRHVELALCHL 549 (600)
Q Consensus 489 ~~~A~~aL~nLa~~-~~~~~~q~~~~~r~~l~e~g~l~~Lv~Ll~s~~~~v~~~Aa~aL~nL 549 (600)
...++.+|+.++.. +++. -. -.....+|.+...+..........+..++..|
T Consensus 616 ~~~~~e~l~~l~~~~~~~~--------~~-~~~~~~~p~~~~iL~~~~~~~~~~~~~i~~~l 668 (960)
T 1wa5_C 616 THYTFESIGAILNYTQRQN--------LP-LLVDSMMPTFLTVFSEDIQEFIPYVFQIIAFV 668 (960)
T ss_dssp HHHHHHHHHHHHHTSCGGG--------HH-HHHHHHHHHHHHHHHTTCTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCcch--------HH-HHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHH
Confidence 77788888888754 2111 11 11234567777766655444444444444444
No 137
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=90.37 E-value=1.9 Score=46.25 Aligned_cols=113 Identities=14% Similarity=0.161 Sum_probs=72.3
Q ss_pred HHHHHhHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHhhhHHH
Q 007520 25 QVDHLTAEIERKQKLRENDKCELEKLLRECQISYDEAKDNLVTQVELLTAKIEMQQKLRENDKYEFEKQLRESQISYDES 104 (600)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (600)
+|.-++.+.||-.+.+= .+|..++.+-+....+++.-|..-.+.|+-. +.+..+-.|-+.++-.||++....-.+.
T Consensus 50 rLQglLdkqErDltkrI---NELKnqLEdlsKnsKdseqy~k~~~E~Lr~r-q~q~~dNdNtynE~S~ELRRrIqyLKek 125 (562)
T 3ghg_A 50 RMKGLIDEVNQDFTNRI---NKLKNSLFEYQKNNKDSHSLTTNIMEILRGD-FSSANNRDNTYNRVSEDLRSRIEVLKRK 125 (562)
T ss_dssp HHHHHHHHHHHHHHHHH---HHHHHHHTHHHHHHHHHHHHHHHHHHTTSSH-HHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred chhhhHHhhcCcHHHHH---HHHHHHHHHHHhhchhHHHHHHHHHHHHHHH-HHhhhccchhHHHHHHHHHHHHHHHHHH
Confidence 34455555555555554 5555555555666666655444333333322 2233344455566666888777777778
Q ss_pred HHHHHHhHHHHHHHhhhHHHHHHHHHhhhhhhhhhhh
Q 007520 105 MRNLVTRSEFLEKENAHLELEVEKILGELNHQKDQNN 141 (600)
Q Consensus 105 ~~~l~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 141 (600)
|.+-..++..|+.-.+++..+|++|+.+|.-|-..+-
T Consensus 126 VdnQlsnIrvLQsnLedq~~kIQRLEvDIdiqirsCK 162 (562)
T 3ghg_A 126 VIEKVQHIQLLQKNVRAQLVDMKRLEVDIDIKIRSCR 162 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 8888888889999999999999999998866655443
No 138
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=90.33 E-value=4.6 Score=33.70 Aligned_cols=56 Identities=20% Similarity=0.138 Sum_probs=33.4
Q ss_pred HHHHHHHHHHhHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhh
Q 007520 20 RKLETQVDHLTAEIERKQKLRENDKCELEKLLRECQISYDEAKDNLVTQVELLTAKIEMQQKLR 83 (600)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (600)
++|+.++.+...|..+-+..+. .|-.+ -.+|.......+. |||.|+++|=+|+..-
T Consensus 15 ~~le~~~~~~~~e~~~L~~~l~---eE~~~-R~~aE~~~~~ie~----ElEeLTasLFeEAN~M 70 (97)
T 2eqb_B 15 NTLKRELSDRDDEVKRLREDIA---KENEL-RTKAEEEADKLNK----EVEDLTASLFDEANNM 70 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH---HHHHH-HHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHH---HHHHH-HHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence 4566666666555555544443 22111 1255555555555 9999999999988654
No 139
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=89.83 E-value=8.8 Score=32.90 Aligned_cols=76 Identities=21% Similarity=0.250 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHh---hhHHHHHHHHHhHHHHHHHhhhHHHHHHHHHhhhhhhhhhhh
Q 007520 66 VTQVELLTAKIEMQQKLRENDKYEFEKQLRESQI---SYDESMRNLVTRSEFLEKENAHLELEVEKILGELNHQKDQNN 141 (600)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 141 (600)
..|++.+|-+|+...+........|++|+.+.+. .|..-+..|+..-.-|+...|.-..++.|+...+|+.=--|.
T Consensus 16 ~~E~e~~k~K~~~~~~e~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD~E~k~n~aiErna 94 (111)
T 2v66_B 16 KYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLEDFEQRLNQAIERNA 94 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 3477788888888777776677788888776654 455667778888888888888888888888877766543333
No 140
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=89.42 E-value=1.6 Score=48.16 Aligned_cols=25 Identities=12% Similarity=0.157 Sum_probs=9.4
Q ss_pred HHHHHHHhhhhhhhhhhhhHHHHHH
Q 007520 124 LEVEKILGELNHQKDQNNLKREKIV 148 (600)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (600)
.|+.+++..+..++....++.+...
T Consensus 544 ~~~~~le~~~~~~~~~~~~l~~e~~ 568 (597)
T 3oja_B 544 QENIALEKQLDNKRAKQAELRQETS 568 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHhhhhhHHHHHHHHHH
Confidence 3333333333333333333333333
No 141
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=89.17 E-value=5.8 Score=41.91 Aligned_cols=113 Identities=9% Similarity=0.146 Sum_probs=92.5
Q ss_pred HHHHHhHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHhhhHHH
Q 007520 25 QVDHLTAEIERKQKLRENDKCELEKLLRECQISYDEAKDNLVTQVELLTAKIEMQQKLRENDKYEFEKQLRESQISYDES 104 (600)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (600)
+|..++.+.||-.+.+= ++|...+.+-+......-. |.+.+.++=.+-+.|+.+-.|--.++-.+|++.+..-.+-
T Consensus 51 rLqglL~kqerdv~~rI---~kLkn~L~~~s~s~~~s~~-y~~~~~~~lk~~~~q~~dndn~~~e~S~eLe~ri~yIK~k 126 (491)
T 1m1j_A 51 RMQGIIDDTDQNYSQRI---DNIRQQLADSQNKYKTSNR-VIVETINILKPGLEGAQQLDENYGHVSTELRRRIVTLKQR 126 (491)
T ss_dssp THHHHHHHHHHHHHHHH---HHHHHHHHHHHHTTTHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhHHHHhhhhHHHHH---HHHHHHHHHHHhhcchHHH-HHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHH
Confidence 35556667777766665 7777777777766666554 5668888888889999999999999999999988888888
Q ss_pred HHHHHHhHHHHHHHhhhHHHHHHHHHhhhhhhhhhhh
Q 007520 105 MRNLVTRSEFLEKENAHLELEVEKILGELNHQKDQNN 141 (600)
Q Consensus 105 ~~~l~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 141 (600)
|.+-...+..|+.-.+++..+|++|+..|..|...+-
T Consensus 127 Vd~qi~~IrvLq~~l~~q~skIQRLE~dI~~q~~~Cr 163 (491)
T 1m1j_A 127 VATQVNRIKALQNSIQEQVVEMKRLEVDIDIKIRACK 163 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 8888899999999999999999999999988877654
No 142
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=89.00 E-value=2 Score=50.98 Aligned_cols=139 Identities=10% Similarity=0.005 Sum_probs=83.7
Q ss_pred CCHHHHHHHHHHHHHhhcCCcc--HHHHHHhCchhhhHhhhccC--CCHH--HHHHHHHHHHHHhCCchhHHHHHHcChH
Q 007520 401 QNTTILRVASGAIANLAMNEMN--QGLIMSRGGGQLLAKTASKT--DDPQ--TLRMVAGALANLCGNEKLHTMLEEDGAI 474 (600)
Q Consensus 401 ~~~~v~~~Al~aL~NLa~~~~~--r~~I~~~G~I~~Lv~lL~~~--~~~~--v~~~Aa~aL~nLa~~~e~r~~i~~~G~i 474 (600)
.+=..++.+++|+..++..... -..++. .+++.|+.++... .++. ++..++++|+..+..-.....+ =..++
T Consensus 465 ~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~-~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~-L~~vl 542 (1023)
T 4hat_C 465 WSWHNINTLSWAIGSISGTMSEDTEKRFVV-TVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNF-LRTVI 542 (1023)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHHHHHHHHH-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHH-HHHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCCchhHHHHHH-HHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHHH-HHHHH
Confidence 5667899999999999987332 222222 3678888877421 1232 3335667777554211111111 01344
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhhcCCchhhhhcchhhHHHHHh------CCcHHHHHH----hhcCCCHHHHHHHHH
Q 007520 475 KALLAMVRSGNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLME------DSALEWLIA----NSKTNSASTRRHVEL 544 (600)
Q Consensus 475 ~~Lv~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~q~~~~~r~~l~e------~g~l~~Lv~----Ll~s~~~~v~~~Aa~ 544 (600)
..|+..|..++++|+..|+++|.+||.. ++..+.. ...++.|+. ....-++.-...+..
T Consensus 543 ~~L~~~l~~~~~~v~~~A~~al~~l~~~-----------c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lye 611 (1023)
T 4hat_C 543 LKLFEFMHETHEGVQDMACDTFIKIVQK-----------CKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYK 611 (1023)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHHH-----------HTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHhhcCCHHHHHHHHHHHHHHHHH-----------HHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 5566666778899999999999999953 3444432 123444444 334456677778888
Q ss_pred HHHHhhcC
Q 007520 545 ALCHLAQN 552 (600)
Q Consensus 545 aL~nLa~~ 552 (600)
++..+...
T Consensus 612 ai~~vi~~ 619 (1023)
T 4hat_C 612 ACGIIISE 619 (1023)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHHh
Confidence 88888654
No 143
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=88.92 E-value=4.2 Score=39.77 Aligned_cols=143 Identities=16% Similarity=0.142 Sum_probs=98.6
Q ss_pred HHHHHHHccCCCHHHHHHHHHHHHHhhcCCccHHHHHHhCchhhhHhhhccCCCHHHHHHHHHHHHHHhC--CchhHHHH
Q 007520 391 DALLLLLRTSQNTTILRVASGAIANLAMNEMNQGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLCG--NEKLHTML 468 (600)
Q Consensus 391 ~~Lv~lL~~~~~~~v~~~Al~aL~NLa~~~~~r~~I~~~G~I~~Lv~lL~~~~~~~v~~~Aa~aL~nLa~--~~e~r~~i 468 (600)
.++..-|-.++..+++-.|+.+|..+ . .. ...++.+...+...++=.|+..++.++..+|. +++.
T Consensus 73 ~~la~~L~~~~~deVR~~Av~lLg~~-~--~~------~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe~---- 139 (240)
T 3l9t_A 73 KKLAFLAYQSDVYQVRMYAVFLFGYL-S--KD------KEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYKK---- 139 (240)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHT-T--TS------HHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTTT----
T ss_pred HHHHHHHHhCcchHHHHHHHHHHHhc-c--Cc------HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHH----
Confidence 34455555566778999999988877 2 11 22455555545444566899999999998873 4431
Q ss_pred HHcChHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchhhhhcchhhHHHHHhCCcHHHHHHhhcCCCHHHHHHHHHHHHH
Q 007520 469 EEDGAIKALLAMVRSGNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSKTNSASTRRHVELALCH 548 (600)
Q Consensus 469 ~~~G~i~~Lv~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~q~~~~~r~~l~e~g~l~~Lv~Ll~s~~~~v~~~Aa~aL~n 548 (600)
.++.+...+.++++-||+.|...+.-.+.. +... .. -.-++|.|-.+..+++.-|+...+++|..
T Consensus 140 ----~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~-~~~k-----~d-----p~~ll~iL~~L~~D~s~yVrKSVan~LrD 204 (240)
T 3l9t_A 140 ----ALPIIDEWLKSSNLHTRRAATEGLRIWTNR-PYFK-----EN-----PNEAIRRIADLKEDVSEYVRKSVGNALRD 204 (240)
T ss_dssp ----THHHHHHHHHCSSHHHHHHHHHHTCSGGGS-TTTT-----TC-----HHHHHHHHHTTTTCSCHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHhcCCCHHHHHHHHHhhHHHhcc-chhh-----cC-----HHHHHHHHHHhcCChHHHHHHHHHHHHHH
Confidence 567788889999999999999887654432 1000 00 01257777778888999999999999999
Q ss_pred hhc-CchhHHHHHH
Q 007520 549 LAQ-NEDNARDFIS 561 (600)
Q Consensus 549 La~-~~~~~~~lv~ 561 (600)
++. +|+....++.
T Consensus 205 ~SK~~Pd~V~~~~~ 218 (240)
T 3l9t_A 205 ISKKFPDLVKIELK 218 (240)
T ss_dssp HHTTCHHHHHHHHH
T ss_pred HhhhCHHHHHHHHH
Confidence 987 5666566554
No 144
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=88.72 E-value=0.31 Score=48.07 Aligned_cols=54 Identities=19% Similarity=0.196 Sum_probs=28.2
Q ss_pred HHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcCCccHHHHHHhCchhhhHhhhccCCCHHHHHHHHH
Q 007520 381 QEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMNEMNQGLIMSRGGGQLLAKTASKTDDPQTLRMVAG 453 (600)
Q Consensus 381 ~~~iv~~G~I~~Lv~lL~~~~~~~v~~~Al~aL~NLa~~~~~r~~I~~~G~I~~Lv~lL~~~~~~~v~~~Aa~ 453 (600)
|......-....|..++. +++..++..++..| ..+.|..++. .+++.|+..++.
T Consensus 67 R~~AA~~l~~~~l~~L~~-D~~~~VR~~aA~~L-----------------~~~~L~~ll~-D~d~~VR~~aA~ 120 (244)
T 1lrv_A 67 RAIAVRYSPVEALTPLIR-DSDEVVRRAVAYRL-----------------PREQLSALMF-DEDREVRITVAD 120 (244)
T ss_dssp HHHHHTTSCGGGGGGGTT-CSSHHHHHHHHTTS-----------------CSGGGGGTTT-CSCHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHcc-CcCHHHHHHHHHHC-----------------CHHHHHHHHc-CCCHHHHHHHHH
Confidence 444444322222333333 77888888777532 1234555553 366677766665
No 145
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=88.47 E-value=4.6 Score=43.21 Aligned_cols=100 Identities=14% Similarity=0.153 Sum_probs=49.4
Q ss_pred chHHHhHHHHHHHHHHhHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhchhHHHHHH
Q 007520 14 DYESLCRKLETQVDHLTAEIERKQKLRENDKCELEKLLRECQISYDEAKDNLVTQVELLTAKIEMQQKLRENDKYEFEKQ 93 (600)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (600)
|-+.-...+..+++.++.++-.+...+ +--..|.|++.|+|..+..+|++-+| =-+-+-.=+.+|||+
T Consensus 370 t~eeal~~~~~~i~~~l~~~~~~~e~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~ 437 (471)
T 3mq9_A 370 TVDEALKDAQTRITAARDGLRAVMEAR-NVTHLLQQELTEAQKGFQDVEAQAAT-----------ANHTVMALMASLDAE 437 (471)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhhHHHHHhh-hHHHHHHHHHHHHhhhHHHHHHHhhh-----------cchhHHHHHHHHHHH
Confidence 445555666666666665554333222 22345555555555555555553221 111222334667776
Q ss_pred HHHHHhhhHHHHHHHHHhHHHHHHHhhhHHHHHHHHHhhhhhh
Q 007520 94 LRESQISYDESMRNLVTRSEFLEKENAHLELEVEKILGELNHQ 136 (600)
Q Consensus 94 ~~~~~~~~~~~~~~l~~~~~~~~~e~~~~~~~~~~~~~~~~~~ 136 (600)
.... ..|++.|+-|.+.|..+++++..++..+
T Consensus 438 ~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (471)
T 3mq9_A 438 KAQG-----------QKKVEELEGEITTLNHKLQDASAEVERL 469 (471)
T ss_dssp HHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6632 2355555555555555555555554433
No 146
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=88.27 E-value=5.7 Score=46.14 Aligned_cols=136 Identities=11% Similarity=0.027 Sum_probs=83.6
Q ss_pred CCCHHHHHHHHHHHHHhhcC-CccHHHHHHhCchhhhHhhhccCCCHHHHHHHHHHHHHHhCCchhHHHHHHcChHHHHH
Q 007520 400 SQNTTILRVASGAIANLAMN-EMNQGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLCGNEKLHTMLEEDGAIKALL 478 (600)
Q Consensus 400 ~~~~~v~~~Al~aL~NLa~~-~~~r~~I~~~G~I~~Lv~lL~~~~~~~v~~~Aa~aL~nLa~~~e~r~~i~~~G~i~~Lv 478 (600)
+.+-..++.++.++..++.. ......++. ..++.+..+. . +++.++..+++++..++..-.....+. ..+++.++
T Consensus 460 ~~~w~~~eaal~al~~i~~~~~~~~~~~l~-~l~~~l~~l~-~-~~~~vr~~~~~~l~~~~~~l~~~~~~l-~~vl~~l~ 535 (963)
T 2x19_B 460 PYSWQHTEALLYGFQSIAETIDVNYSDVVP-GLIGLIPRIS-I-SNVQLADTVMFTIGALSEWLADHPVMI-NSVLPLVL 535 (963)
T ss_dssp SCCHHHHHHHHHHHHHHTTSCCSSCCSHHH-HHHHHGGGSC-C-CSHHHHHHHHHHHHHTHHHHHHCHHHH-TTTHHHHH
T ss_pred CCchHHHHHHHHHHHHHHhhcCchhhHHHH-HHHHHHHhCC-C-CcHHHHHHHHHHHHHHHHHHHhCHHHH-HHHHHHHH
Confidence 45667788899999999876 211111111 1333333332 2 577899999999998874311011222 36777788
Q ss_pred HHHcCCCHHHHHHHHHHHHHhhcCCchhhhhcchhhHHHHHh--CCcHHHHHHhhcC--CCHHHHHHHHHHHHHhhcC
Q 007520 479 AMVRSGNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLME--DSALEWLIANSKT--NSASTRRHVELALCHLAQN 552 (600)
Q Consensus 479 ~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~q~~~~~r~~l~e--~g~l~~Lv~Ll~s--~~~~v~~~Aa~aL~nLa~~ 552 (600)
..|++ +.|+..|+.+|.+|+...+ ..+.- ...++.|..++.. -+...+..+..++..++..
T Consensus 536 ~~l~~--~~V~~~A~~al~~l~~~~~-----------~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~ 600 (963)
T 2x19_B 536 HALGN--PELSVSSVSTLKKICRECK-----------YDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSA 600 (963)
T ss_dssp HHTTC--GGGHHHHHHHHHHHHHHTG-----------GGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTT
T ss_pred HHhCC--chHHHHHHHHHHHHHHHHH-----------HHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhc
Confidence 77754 7899999999999985321 11211 1234444555554 2567888888888888653
No 147
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=87.83 E-value=6.4 Score=34.59 Aligned_cols=67 Identities=13% Similarity=0.164 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHhhhHHHHhhhhHHHHHHHHhccC
Q 007520 224 HELCVKLKETRQLHESAVYEVQTLKSEYKNLLEEKETMSDELQAARQRLLVEEKQRKAIEYELVKLKKTA 293 (600)
Q Consensus 224 ~~l~~~~~d~~~~~e~~~~el~~l~~~~~~l~~~~~~~~~el~~~~~~l~~e~~~~~~le~~~~~l~~~l 293 (600)
..|+..+.|+.+.++..... ....+..+..+.+.+..++.+...-..+=.+.+-.+.-+|+.+...|
T Consensus 60 ~~LE~~l~e~e~~~~~~l~~---~q~~i~~lE~eL~~~r~e~~~ql~EYq~LlnvKl~Ld~EIatYRkLL 126 (129)
T 3tnu_B 60 ANLQNAIADAEQRGELALKD---ARNKLAELEEALQKAKQDMARLLREYQELMNTKLALDVEIATYRKLL 126 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 45555566665555543222 33334333333333333333321111111122334556666666544
No 148
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=87.45 E-value=2.7 Score=34.42 Aligned_cols=33 Identities=24% Similarity=0.275 Sum_probs=26.6
Q ss_pred HHHHHHHHhHhHHHhhhhhHHHHHHHHHHHhhh
Q 007520 181 KIAELNKKLEDEHACFEGAVEQLDMVKKLLSDY 213 (600)
Q Consensus 181 ~~~~l~~~l~~e~~~~~~~~~~~~~~~~~~~~~ 213 (600)
.+.+++.+.++|.+.+.++|..+..+++.+-+.
T Consensus 29 ~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a 61 (86)
T 3swk_A 29 DIMRLREKLQEEMLQREEAENTLQSFRQDVDNA 61 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 355778888999999999999999977766554
No 149
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=87.37 E-value=2.4 Score=50.38 Aligned_cols=141 Identities=6% Similarity=-0.063 Sum_probs=83.9
Q ss_pred CCHHHHHHHHHHHHHhhCCcc-h-HHHHHHcCCHHHHHHHHccC----CCHHHHHHHHHHHHHhhcCCccHHHHHHhCch
Q 007520 359 EDPDVQIHAVKVVANLAAEDI-N-QEKIVEEGGLDALLLLLRTS----QNTTILRVASGAIANLAMNEMNQGLIMSRGGG 432 (600)
Q Consensus 359 ~~~~vr~~Aa~aL~nLa~~~~-~-~~~iv~~G~I~~Lv~lL~~~----~~~~v~~~Al~aL~NLa~~~~~r~~I~~~G~I 432 (600)
.+...++.++.+++.++.... . -..++.. +++.|+.++... +...++..++++|...+..-......... .+
T Consensus 465 ~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~-vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~L~~-vl 542 (1023)
T 4hat_C 465 WSWHNINTLSWAIGSISGTMSEDTEKRFVVT-VIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLRT-VI 542 (1023)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHHHHHHHHHH-HHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHHHHH-HH
T ss_pred CCHHHHHHHHHHHHHHHcCCCchhHHHHHHH-HHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHHHHHH-HH
Confidence 578999999999999997432 2 2223322 588888887531 12234445667777665431111122221 44
Q ss_pred hhhHhhhccCCCHHHHHHHHHHHHHHhCCchhHHHHHH------cChHHHH----HHHHcCCCHHHHHHHHHHHHHhhcC
Q 007520 433 QLLAKTASKTDDPQTLRMVAGALANLCGNEKLHTMLEE------DGAIKAL----LAMVRSGNIDVIAQVARGLANFAKC 502 (600)
Q Consensus 433 ~~Lv~lL~~~~~~~v~~~Aa~aL~nLa~~~e~r~~i~~------~G~i~~L----v~lL~s~~~~v~~~A~~aL~nLa~~ 502 (600)
..|+..+. .++|.++.+||+++.+||.. .+..+.. ...++.+ ...+..-++.-...+..+++.+...
T Consensus 543 ~~L~~~l~-~~~~~v~~~A~~al~~l~~~--c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~~ 619 (1023)
T 4hat_C 543 LKLFEFMH-ETHEGVQDMACDTFIKIVQK--CKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISE 619 (1023)
T ss_dssp HHHHHHTT-CSCHHHHHHHHHHHHHHHHH--HTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhh-cCCHHHHHHHHHHHHHHHHH--HHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 45555553 25678999999999999853 2233331 1133333 3334445666677888888888766
Q ss_pred Cc
Q 007520 503 ES 504 (600)
Q Consensus 503 ~~ 504 (600)
-+
T Consensus 620 ~~ 621 (1023)
T 4hat_C 620 ER 621 (1023)
T ss_dssp CC
T ss_pred CC
Confidence 44
No 150
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=86.91 E-value=11 Score=32.18 Aligned_cols=86 Identities=19% Similarity=0.210 Sum_probs=50.6
Q ss_pred HHHhHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHhhhHH---HHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHhhhHH
Q 007520 27 DHLTAEIERKQKLRENDKCELEKLLRECQISYDEAKDNLV---TQVELLTAKIEMQQKLRENDKYEFEKQLRESQISYDE 103 (600)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (600)
|-|-++.|=+.. +.-|+++|..||..+.+.|-..+ .=|..|+++|+++.+.. .+.-+|+ .+
T Consensus 15 dGLrAq~ECrN~-----T~lLq~qLTqAQe~l~~~eaQAaTCNqTV~tL~~SL~~ekaq~----q~~vqeL-------qg 78 (121)
T 3mq7_A 15 DGLRAVMEARNV-----THLLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQG----QKKVEEL-------EG 78 (121)
T ss_dssp HHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHH-------HH
T ss_pred HHHHHHHHHHhH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHH-------HH
Confidence 445555444332 36789999999999999996553 35788888888766654 1111222 24
Q ss_pred HHHHHHHhHHHHHHHhhhHHHHHHH
Q 007520 104 SMRNLVTRSEFLEKENAHLELEVEK 128 (600)
Q Consensus 104 ~~~~l~~~~~~~~~e~~~~~~~~~~ 128 (600)
.|+.|..++.....|.-+|+.+...
T Consensus 79 EI~~Lnq~Lq~a~ae~erlr~~~~~ 103 (121)
T 3mq7_A 79 EITTLNHKLQDASAEVERLRRENQV 103 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhchh
Confidence 4555555554444444444444443
No 151
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=86.85 E-value=8 Score=32.09 Aligned_cols=65 Identities=22% Similarity=0.362 Sum_probs=42.8
Q ss_pred HHhHHHHHHHhhhHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHhhhhhhhhhhhhhHHhhhhhhhhhhhHHHHHHHHHH
Q 007520 109 VTRSEFLEKENAHLELEVEKILGELNHQKDQNNLKREKIVQLEISLKNSKQYEMENSTYQKALADTTQLYEKKIAELNKK 188 (600)
Q Consensus 109 ~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~l~~~ 188 (600)
-.|+-||+.+|+.|+.+++.+... ... .--..|+..|.+|+++
T Consensus 22 IdKVR~LEqqN~~Le~~i~~l~~~-----~~~--------------------------------~~~~~ye~~i~~Lr~~ 64 (93)
T 3s4r_A 22 IDKVRFLEQQNKILLAELEQLKGQ-----GKS--------------------------------RLGDLYEEEMRELRRQ 64 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-----HHH--------------------------------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhc-----cCC--------------------------------CcHHHHHHHHHHHHHH
Confidence 356668888999999888764321 100 0224689999999999
Q ss_pred hHhHHHhhhhhHHHHHHHHHHH
Q 007520 189 LEDEHACFEGAVEQLDMVKKLL 210 (600)
Q Consensus 189 l~~e~~~~~~~~~~~~~~~~~~ 210 (600)
|.+-..-....+-+++.|+..+
T Consensus 65 i~~~~~ek~~l~~e~dnl~~~~ 86 (93)
T 3s4r_A 65 VDQLTNDKARVEVERDNLAEDI 86 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9977666666666666543333
No 152
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=85.51 E-value=16 Score=42.46 Aligned_cols=167 Identities=14% Similarity=0.020 Sum_probs=94.1
Q ss_pred HHHHHHHHHHHHhhCCcchHHHHHHcCCHHHHHHHHcc----CCCHHHHHHHHHHHHHhhcC-CccHHHHHHhCchhhhH
Q 007520 362 DVQIHAVKVVANLAAEDINQEKIVEEGGLDALLLLLRT----SQNTTILRVASGAIANLAMN-EMNQGLIMSRGGGQLLA 436 (600)
Q Consensus 362 ~vr~~Aa~aL~nLa~~~~~~~~iv~~G~I~~Lv~lL~~----~~~~~v~~~Al~aL~NLa~~-~~~r~~I~~~G~I~~Lv 436 (600)
..|..++.+|..++..-+. .+... .++.+-..+.. ..+-..++.++.++..++.. ..... ..++.++
T Consensus 436 ~~R~~~~~~l~~~~~~~~~--~~l~~-~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~~-----~~l~~l~ 507 (971)
T 2x1g_F 436 CYRQDISDTFMYCYDVLND--YILEI-LAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEEK-----RQIPRLM 507 (971)
T ss_dssp HHHHHHHHHHHHHHTTCTT--HHHHH-HHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC-----------CHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhH--HHHHH-HHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhhh-----HHHHHHH
Confidence 4567777788777763221 11111 11222222221 13445788899999999876 21111 2233333
Q ss_pred hhh---cc-CCCHHHHHHHHHHHHHHhCCchhHHHHHHcChHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchhhhhcch
Q 007520 437 KTA---SK-TDDPQTLRMVAGALANLCGNEKLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFAKCESRAIVQGQR 512 (600)
Q Consensus 437 ~lL---~~-~~~~~v~~~Aa~aL~nLa~~~e~r~~i~~~G~i~~Lv~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~q~~~ 512 (600)
.++ .. ..++.++..++++|+.++..-.....+. ..+++.++..|. +.|+..|+++|.+|+...
T Consensus 508 ~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l-~~vl~~l~~~l~---~~v~~~A~~al~~l~~~~--------- 574 (971)
T 2x1g_F 508 RVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYI-PPAINLLVRGLN---SSMSAQATLGLKELCRDC--------- 574 (971)
T ss_dssp HHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CH-HHHHHHHHHHHH---SSCHHHHHHHHHHHHHHC---------
T ss_pred HHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHH-HHHHHHHHHHhC---hHHHHHHHHHHHHHHHHH---------
Confidence 322 21 2478899999999998873210000111 135566666663 778999999999999532
Q ss_pred hhHHHHHh--CCcHHHHHHhhcC--CCHHHHHHHHHHHHHhhc
Q 007520 513 KGRSHLME--DSALEWLIANSKT--NSASTRRHVELALCHLAQ 551 (600)
Q Consensus 513 ~~r~~l~e--~g~l~~Lv~Ll~s--~~~~v~~~Aa~aL~nLa~ 551 (600)
+..+.- ...+..|..++.. -+...+..+..++..++.
T Consensus 575 --~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~ 615 (971)
T 2x1g_F 575 --QLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMS 615 (971)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHH
T ss_pred --HHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHH
Confidence 222221 2455566666766 357788888888888865
No 153
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=85.23 E-value=11 Score=30.78 Aligned_cols=72 Identities=29% Similarity=0.357 Sum_probs=46.0
Q ss_pred HHHHHHHHHHhHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHh
Q 007520 20 RKLETQVDHLTAEIERKQKLRENDKCELEKLLRECQISYDEAKDNLVTQVELLTAKIEMQQKLRENDKYEFEKQLRESQI 99 (600)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (600)
+.|-.|++.++.|+.|-.--++ |+...++.++.+|+.++..| ...|++..-.+.
T Consensus 3 ~eLr~qi~~l~~e~~~l~~e~d----------------------n~~~~~edfk~KyE~E~~~R----~~~E~d~~~Lrk 56 (86)
T 3swk_A 3 RELRRQVDQLTNDKARVEVERD----------------------NLAEDIMRLREKLQEEMLQR----EEAENTLQSFRQ 56 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhHHHHHHHHH----------------------HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHh
Confidence 3456677777777666544333 33446677778888999888 888888887777
Q ss_pred hhHHHH---HHHHHhHHHHHH
Q 007520 100 SYDESM---RNLVTRSEFLEK 117 (600)
Q Consensus 100 ~~~~~~---~~l~~~~~~~~~ 117 (600)
+.|+-+ ..|+.+++.|..
T Consensus 57 dvD~a~l~r~dLE~kvesL~e 77 (86)
T 3swk_A 57 DVDNASLARLDLERKVESLQE 77 (86)
T ss_dssp THHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 666543 334444443333
No 154
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=84.63 E-value=6.9 Score=34.48 Aligned_cols=67 Identities=13% Similarity=0.145 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHhhhHHHHhhhhHHHHHHHHhccC
Q 007520 224 HELCVKLKETRQLHESAVYEVQTLKSEYKNLLEEKETMSDELQAARQRLLVEEKQRKAIEYELVKLKKTA 293 (600)
Q Consensus 224 ~~l~~~~~d~~~~~e~~~~el~~l~~~~~~l~~~~~~~~~el~~~~~~l~~e~~~~~~le~~~~~l~~~l 293 (600)
..|+..+.|+...++..... ....+..+..+.+.+..++.+...-..+=.+.+-.+.-+|+.+...|
T Consensus 62 ~sLE~~l~e~e~~~~~~l~~---~q~~i~~lE~eL~~~r~em~~ql~EYq~Ll~vKl~Ld~EIatYRkLL 128 (131)
T 3tnu_A 62 ASLENSLEETKGRYCMQLAQ---IQEMIGSVEEQLAQLRCEMEQQNQEYKILLDVKTRLEQEIATYRRLL 128 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 45555555555555543222 33333333333333333333321111111122334455666665544
No 155
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=84.35 E-value=3.5 Score=49.06 Aligned_cols=140 Identities=17% Similarity=0.100 Sum_probs=82.0
Q ss_pred HHHHHHHHcc---CCCHHHHHHHHHHHHHhhc----CCccHHHHHHhCchhhhHhhhc---cCCCHHHHHHHHHHHHHHh
Q 007520 390 LDALLLLLRT---SQNTTILRVASGAIANLAM----NEMNQGLIMSRGGGQLLAKTAS---KTDDPQTLRMVAGALANLC 459 (600)
Q Consensus 390 I~~Lv~lL~~---~~~~~v~~~Al~aL~NLa~----~~~~r~~I~~~G~I~~Lv~lL~---~~~~~~v~~~Aa~aL~nLa 459 (600)
+..+..++.. ..++.++..|+.++++|.. +...+ ....++.+...|. ...+......++.+|+|+-
T Consensus 393 l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c----~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g 468 (1056)
T 1lsh_A 393 LSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSC----PDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAG 468 (1056)
T ss_dssp HHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSC----CGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCC----CHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccC
Confidence 3444455542 1355667777777766653 22221 1122444444332 2345666778888999987
Q ss_pred CCchhHHHHHHcChHHHHHHHHc-------CCCHHHHHHHHHHHHHhhcCCchhhhhcchhhHHHHHhCCcHHHHHHhh-
Q 007520 460 GNEKLHTMLEEDGAIKALLAMVR-------SGNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANS- 531 (600)
Q Consensus 460 ~~~e~r~~i~~~G~i~~Lv~lL~-------s~~~~v~~~A~~aL~nLa~~~~~~~~q~~~~~r~~l~e~g~l~~Lv~Ll- 531 (600)
.. +.++.|..++. +....++..|+++|.+++...|. -+-+.++.+.
T Consensus 469 ~p----------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~----------------~v~~il~~i~~ 522 (1056)
T 1lsh_A 469 QP----------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPR----------------KVQEIVLPIFL 522 (1056)
T ss_dssp CG----------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHH----------------HHHHHHHHHHH
T ss_pred Ch----------hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchH----------------HHHHHHHHHhc
Confidence 63 34566666653 22457888999999999854332 1344566666
Q ss_pred -cCCCHHHHHHHHHHHHHhhcCchhHHHH
Q 007520 532 -KTNSASTRRHVELALCHLAQNEDNARDF 559 (600)
Q Consensus 532 -~s~~~~v~~~Aa~aL~nLa~~~~~~~~l 559 (600)
...++.+|..|+.+|....-+......|
T Consensus 523 n~~e~~EvRiaA~~~Lm~t~P~~~~l~~i 551 (1056)
T 1lsh_A 523 NVAIKSELRIRSCIVFFESKPSVALVSMV 551 (1056)
T ss_dssp CTTSCHHHHHHHHHHHHHTCCCHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHCcCHHHHHHH
Confidence 4467889999888887654443333333
No 156
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=84.26 E-value=11 Score=36.91 Aligned_cols=145 Identities=14% Similarity=0.063 Sum_probs=94.1
Q ss_pred HHHhcCCHHHHH----HhhCCCCHHHHHHHHHHHHHhhCCcchHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhh
Q 007520 342 KICDEVGLPKIL----QLLTSEDPDVQIHAVKVVANLAAEDINQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLA 417 (600)
Q Consensus 342 ~i~e~GgV~~Lv----~LL~s~~~~vr~~Aa~aL~nLa~~~~~~~~iv~~G~I~~Lv~lL~~~~~~~v~~~Al~aL~NLa 417 (600)
.++.....+.++ .+..++...+|..|+.+|+.+ ... ...++.+...+..+++=.|++.++.++..++
T Consensus 62 ~~~~~~~~~~~~~la~~L~~~~~deVR~~Av~lLg~~-~~~--------~~~L~~ir~~va~D~~WrVre~lA~a~~~~~ 132 (240)
T 3l9t_A 62 TDYKSNDGEYIKKLAFLAYQSDVYQVRMYAVFLFGYL-SKD--------KEILIFMRDEVSKDNNWRVQEVLAKAFDEFC 132 (240)
T ss_dssp HHHHHSCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHT-TTS--------HHHHHHHHHTGGGCSCHHHHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHhCcchHHHHHHHHHHHhc-cCc--------HHHHHHHHHHhCCCCCccHHHHHHHHHHHHH
Confidence 344444444333 444677889999999988877 211 1134555554555777789999999999998
Q ss_pred c--CCccHHHHHHhCchhhhHhhhccCCCHHHHHHHHHHHHHHhCCchhHHHHHHcChHHHHHHHHcCCCHHHHHHHHHH
Q 007520 418 M--NEMNQGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLCGNEKLHTMLEEDGAIKALLAMVRSGNIDVIAQVARG 495 (600)
Q Consensus 418 ~--~~~~r~~I~~~G~I~~Lv~lL~~~~~~~v~~~Aa~aL~nLa~~~e~r~~i~~~G~i~~Lv~lL~s~~~~v~~~A~~a 495 (600)
. +++. .++.+...+ .++++-+++.|+..+.--|.-+..+. .-.-+++.|-.+..+++.-|+..+++.
T Consensus 133 ~~~~pe~--------~l~~~~~W~-~d~n~~VRR~Ase~~rpW~~~~~~k~--dp~~ll~iL~~L~~D~s~yVrKSVan~ 201 (240)
T 3l9t_A 133 KKIEYKK--------ALPIIDEWL-KSSNLHTRRAATEGLRIWTNRPYFKE--NPNEAIRRIADLKEDVSEYVRKSVGNA 201 (240)
T ss_dssp HHHCTTT--------THHHHHHHH-HCSSHHHHHHHHHHTCSGGGSTTTTT--CHHHHHHHHHTTTTCSCHHHHHHHHHH
T ss_pred HhcCHHH--------HHHHHHHHh-cCCCHHHHHHHHHhhHHHhccchhhc--CHHHHHHHHHHhcCChHHHHHHHHHHH
Confidence 5 3431 455566666 45888999999887653332111110 001144455555568889999999999
Q ss_pred HHHhhcCCchh
Q 007520 496 LANFAKCESRA 506 (600)
Q Consensus 496 L~nLa~~~~~~ 506 (600)
|..+++.+|+.
T Consensus 202 LrD~SK~~Pd~ 212 (240)
T 3l9t_A 202 LRDISKKFPDL 212 (240)
T ss_dssp HHHHHTTCHHH
T ss_pred HHHHhhhCHHH
Confidence 99999998763
No 157
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=84.10 E-value=7.4 Score=45.97 Aligned_cols=135 Identities=10% Similarity=-0.011 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHhhCCcchHHHHHHcCCHHHHHHHHcc-CCCHHHHHHHHHHHHHhhcC-Ccc-HHHHHHhCchhhhHhhh
Q 007520 363 VQIHAVKVVANLAAEDINQEKIVEEGGLDALLLLLRT-SQNTTILRVASGAIANLAMN-EMN-QGLIMSRGGGQLLAKTA 439 (600)
Q Consensus 363 vr~~Aa~aL~nLa~~~~~~~~iv~~G~I~~Lv~lL~~-~~~~~v~~~Al~aL~NLa~~-~~~-r~~I~~~G~I~~Lv~lL 439 (600)
.+..+..+|..++...+. .+... ..+.+-..+.. ..+-..++.+++++..++.. ... ...+. ...++.|..+.
T Consensus 429 ~~~~~~~~L~~l~~~~~~--~~l~~-v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l-~~v~~~l~~l~ 504 (1049)
T 3m1i_C 429 LYKSEREVLVYLTHLNVI--DTEEI-MISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFV-VTVIKDLLDLT 504 (1049)
T ss_dssp HHHHHHHHHHHHHHHCHH--HHHHH-HHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHH-HHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHccCHH--HHHHH-HHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHH-HHHHHHHHHHH
Confidence 355566677777742111 11111 12333333432 34566788899999998864 111 11111 11344444432
Q ss_pred cc--C--CCHHHHHHHHHHHHHHhCCchhHHHHHHcChHHHHHHHHcCCCHHHHHHHHHHHHHhhcC
Q 007520 440 SK--T--DDPQTLRMVAGALANLCGNEKLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFAKC 502 (600)
Q Consensus 440 ~~--~--~~~~v~~~Aa~aL~nLa~~~e~r~~i~~~G~i~~Lv~lL~s~~~~v~~~A~~aL~nLa~~ 502 (600)
.. . +++.++..++++++..+..-.....+. ..+++.++..|.++++.|+..|+.+|.+|+..
T Consensus 505 ~~~~~~~~~~~v~~~~~~~lgry~~~~~~~~~~l-~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~ 570 (1049)
T 3m1i_C 505 VKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFL-RTVILKLFEFMHETHEGVQDMACDTFIKIVQK 570 (1049)
T ss_dssp TSSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHH-HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHH
T ss_pred hhhccccchHHHHHHHHHHHHHHHHHHHhHHHHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 11 1 222333357788887663211111111 23566777778888999999999999999954
No 158
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=83.97 E-value=1.3e+02 Score=40.13 Aligned_cols=27 Identities=7% Similarity=0.225 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 007520 50 LLRECQISYDEAKDNLVTQVELLTAKIEMQQ 80 (600)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (600)
++.||...+++.++ +++.++-+|+...
T Consensus 1928 KL~et~~~V~~l~~----~L~~~~~~L~~k~ 1954 (3245)
T 3vkg_A 1928 KLRDTEAQVKDLQV----SLAQKNRELDVKN 1954 (3245)
T ss_dssp HHHHHHHHHHHHHH----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 45577777777777 3444444444433
No 159
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=83.94 E-value=4.4 Score=29.33 Aligned_cols=46 Identities=13% Similarity=0.180 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHH
Q 007520 224 HELCVKLKETRQLHESAVYEVQTLKSEYKNLLEEKETMSDELQAAR 269 (600)
Q Consensus 224 ~~l~~~~~d~~~~~e~~~~el~~l~~~~~~l~~~~~~~~~el~~~~ 269 (600)
++|..++++++-+...+..|+.|.++++..|.....++++-+..+.
T Consensus 6 dQL~~QVe~Lk~ENshLrrEL~dNS~~lskLE~ets~mKevlk~lq 51 (54)
T 1deb_A 6 DQLLKQVEALKMENSNLRQELEDNSNHLTKLETEASNMKEVLKQLQ 51 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHc
Confidence 6788899999999999999999999999888888888877776654
No 160
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=83.92 E-value=1.9 Score=33.19 Aligned_cols=38 Identities=26% Similarity=0.273 Sum_probs=29.5
Q ss_pred HhhhHHHHHHHHHhHHHHHHHhhhHHHHHHHHHhhhhh
Q 007520 98 QISYDESMRNLVTRSEFLEKENAHLELEVEKILGELNH 135 (600)
Q Consensus 98 ~~~~~~~~~~l~~~~~~~~~e~~~~~~~~~~~~~~~~~ 135 (600)
+.--.+-+..|+.+++.|..+|..|..++..|...+.+
T Consensus 25 R~RK~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l~~ 62 (63)
T 2dgc_A 25 RARKLQRMKQLEDKVEELLSKNYHLENEVARLKKLVGE 62 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33334667799999999999999999999999877653
No 161
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=83.61 E-value=15 Score=40.32 Aligned_cols=12 Identities=25% Similarity=0.362 Sum_probs=4.9
Q ss_pred hHHHHHHHHHHh
Q 007520 178 YEKKIAELNKKL 189 (600)
Q Consensus 178 ~~~~~~~l~~~l 189 (600)
...++.+|.+.+
T Consensus 570 ~~~~~~~l~~~~ 581 (597)
T 3oja_B 570 KRQKVKQLEAKK 581 (597)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHh
Confidence 334444444333
No 162
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=83.59 E-value=25 Score=31.80 Aligned_cols=38 Identities=18% Similarity=0.223 Sum_probs=25.5
Q ss_pred hhhhhHHHHHHHHHHhHhHHHhhhhhHHHHHHHHHHHh
Q 007520 174 TTQLYEKKIAELNKKLEDEHACFEGAVEQLDMVKKLLS 211 (600)
Q Consensus 174 ~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~~~~~~~~~ 211 (600)
....++.+...|.+.+.+-..+....+++|..||.++-
T Consensus 109 ~~~~~e~r~~~L~~ql~e~~~~l~~lq~ql~~LK~v~~ 146 (154)
T 2ocy_A 109 EKYAIEILNKRLTEQLREKDTLLDTLTLQLKNLKKVMH 146 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556677777777777776776666666666666553
No 163
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=83.05 E-value=14 Score=36.71 Aligned_cols=127 Identities=13% Similarity=0.089 Sum_probs=85.6
Q ss_pred CCHHHHHHHHHHHHHHhC---CchhHHHHH-HcChHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchhhhhcchhhHHHH
Q 007520 443 DDPQTLRMVAGALANLCG---NEKLHTMLE-EDGAIKALLAMVRSGNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHL 518 (600)
Q Consensus 443 ~~~~v~~~Aa~aL~nLa~---~~e~r~~i~-~~G~i~~Lv~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~q~~~~~r~~l 518 (600)
.++.+...++.+|..+.. +.+.+-.-. ..-.+|.|+.-+.+....+|..+-.+|..++.-.|
T Consensus 99 ~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~-------------- 164 (266)
T 2of3_A 99 TNPAALIKVLELCKVIVELIRDTETPMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVG-------------- 164 (266)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHC--------------
T ss_pred CCHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCC--------------
Confidence 577787777777766531 111111001 12367888888888888999998888877763211
Q ss_pred HhCCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCchhHHHHHHcccH---HHHHHhhhcCChHHHHHHHHHHHh
Q 007520 519 MEDSALEWLIANSKTNSASTRRHVELALCHLAQNEDNARDFISRGGA---KELVQISIESSREDIRNLAKKTMK 589 (600)
Q Consensus 519 ~e~g~l~~Lv~Ll~s~~~~v~~~Aa~aL~nLa~~~~~~~~lv~~G~l---~~Lv~ll~~~~~~~ir~~A~~~L~ 589 (600)
-..+.+.++.-+.+.+..++..++..+..+-...+.. -.+++ +.+..++.+++ ..+|++|..++.
T Consensus 165 -~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~----~~~~l~~~~~ia~ll~D~d-~~VR~aAl~~lv 232 (266)
T 2of3_A 165 -PLKMTPMLLDALKSKNARQRSECLLVIEYYITNAGIS----PLKSLSVEKTVAPFVGDKD-VNVRNAAINVLV 232 (266)
T ss_dssp -HHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSG----GGGGGCHHHHHGGGGGCSS-HHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCC----ccccccchHHHHHHHcCCC-HHHHHHHHHHHH
Confidence 1236677788888999999999999988884322221 24578 88999988754 679999986664
No 164
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=81.48 E-value=32 Score=31.53 Aligned_cols=75 Identities=19% Similarity=0.199 Sum_probs=35.5
Q ss_pred HHHHhhhchhHHHHHHHHHHHhhhHHHHHHHHHhHH---HHHHHhhhHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHH
Q 007520 78 MQQKLRENDKYEFEKQLRESQISYDESMRNLVTRSE---FLEKENAHLELEVEKILGELNHQKDQNNLKREKIVQLEI 152 (600)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (600)
.-...-.+.+..|++++...|......-...-...+ .|.--+..|..|+++++..+.+-...+.-..+++..||.
T Consensus 55 ~~~~~L~~~k~~Leke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEK 132 (168)
T 3o0z_A 55 ERNRILENSKSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEK 132 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444455666665555544444322222222 344444555555555555555544555555555554443
No 165
>2avr_X Adhesion A; antiparallel helix-loop-helix, leucine chain; HET: FLC; 1.90A {Fusobacterium nucleatum} PDB: 3etw_A 2gkq_A 2bc6_A 3etx_A 3ety_A 2gld_A 3etz_A 2gl2_A
Probab=81.44 E-value=25 Score=30.43 Aligned_cols=85 Identities=14% Similarity=0.182 Sum_probs=46.0
Q ss_pred HHHhHHHHHHHHHHh-HHHHHHHHhhhccHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhchhHHHHHHH
Q 007520 16 ESLCRKLETQVDHLT-AEIERKQKLRENDKCELEKLLRECQISYDEAKDNLVTQVELLTAKIEMQQKLRENDKYEFEKQL 94 (600)
Q Consensus 16 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (600)
.|=..-||.|++.|. .|.+|+.+.+. ....|+....+-..-|+ +|+-.-.+++.-.+
T Consensus 8 ~s~l~~LEaeyq~L~~kE~qrynqeka--------~AE~A~~~L~~~~~m~~-~i~ek~~~i~~~~~------------- 65 (119)
T 2avr_X 8 VGELQALDAEYQNLANQEEARFNEERA--------QADAARQALAQNEQVYN-ELSQRAQRLQAEAN------------- 65 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHTT-------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhc-------------
Confidence 345567899999996 78888776653 12244444444433232 22222222222111
Q ss_pred HHHHhhhHHHHHHHHHhHHHHHHHhhhHHHHHHH
Q 007520 95 RESQISYDESMRNLVTRSEFLEKENAHLELEVEK 128 (600)
Q Consensus 95 ~~~~~~~~~~~~~l~~~~~~~~~e~~~~~~~~~~ 128 (600)
-.-|.+.+.+|..+|..+. ..|+.+|++
T Consensus 66 ---~~~yK~eY~~L~KkYk~~~---~~Ld~eI~~ 93 (119)
T 2avr_X 66 ---TRFYKSQYQELASKYEDAL---KKLEAEMEQ 93 (119)
T ss_dssp ---SCTTHHHHHHHHHHHHHHH---HHHHHHHHH
T ss_pred ---ccHHHHHHHHHHHHHHHHH---HHHHHHHHH
Confidence 1357888888888884433 334555555
No 166
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=81.08 E-value=8.5 Score=44.84 Aligned_cols=132 Identities=13% Similarity=0.085 Sum_probs=82.2
Q ss_pred CCHHHHHHHHHHHHHhhCCcchHHHHHHcCCHHHHHHHH---c-cCCCHHHHHHHHHHHHHhhcC-CccHHHHHHhCchh
Q 007520 359 EDPDVQIHAVKVVANLAAEDINQEKIVEEGGLDALLLLL---R-TSQNTTILRVASGAIANLAMN-EMNQGLIMSRGGGQ 433 (600)
Q Consensus 359 ~~~~vr~~Aa~aL~nLa~~~~~~~~iv~~G~I~~Lv~lL---~-~~~~~~v~~~Al~aL~NLa~~-~~~r~~I~~~G~I~ 433 (600)
.+...++.|+.+++.++....... ...++.++.++ . .++++.++..++++|..++.. ..+. .... .+++
T Consensus 476 ~~w~~~eaal~~l~~iae~~~~~~----~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~-~~l~-~vl~ 549 (971)
T 2x1g_F 476 THWTKLEACIYSFQSVAEHFGGEE----KRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENP-AYIP-PAIN 549 (971)
T ss_dssp TCCHHHHHHHHHHHHTTTC----------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC-----CHH-HHHH
T ss_pred CcHHHHHHHHHHHHHHHhhcChhh----hHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCH-HHHH-HHHH
Confidence 566788999999999886322110 12344444443 2 134788999999999999865 2222 1111 2556
Q ss_pred hhHhhhccCCCHHHHHHHHHHHHHHhCCchhHHHHHH--cChHHHHHHHHcC--CCHHHHHHHHHHHHHhhcC
Q 007520 434 LLAKTASKTDDPQTLRMVAGALANLCGNEKLHTMLEE--DGAIKALLAMVRS--GNIDVIAQVARGLANFAKC 502 (600)
Q Consensus 434 ~Lv~lL~~~~~~~v~~~Aa~aL~nLa~~~e~r~~i~~--~G~i~~Lv~lL~s--~~~~v~~~A~~aL~nLa~~ 502 (600)
.|+..| + +.++..|+.++.+||.+ .+..+.- .+.+..+..++.. -+...+..+..+++.++..
T Consensus 550 ~l~~~l-~---~~v~~~A~~al~~l~~~--~~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~ 616 (971)
T 2x1g_F 550 LLVRGL-N---SSMSAQATLGLKELCRD--CQLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSL 616 (971)
T ss_dssp HHHHHH-H---SSCHHHHHHHHHHHHHH--CHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHh-C---hHHHHHHHHHHHHHHHH--HHHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHh
Confidence 666666 2 57889999999999933 2333321 2455566666765 4577888888898888754
No 167
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=80.76 E-value=21 Score=30.60 Aligned_cols=17 Identities=12% Similarity=0.180 Sum_probs=8.4
Q ss_pred hhhhhHHHHHHHHHHhH
Q 007520 174 TTQLYEKKIAELNKKLE 190 (600)
Q Consensus 174 ~~~~~~~~~~~l~~~l~ 190 (600)
.+..+..++..|...++
T Consensus 39 k~E~~k~qV~~L~~~~q 55 (112)
T 1x79_B 39 SSEDSSHQISALVLRAQ 55 (112)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34445555555554443
No 168
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=80.48 E-value=29 Score=30.33 Aligned_cols=86 Identities=20% Similarity=0.209 Sum_probs=52.1
Q ss_pred hhhhhhhhhhHHHHHHHHHHhHhHHHhhhhhHHHHHHHHHHHhhhhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007520 169 KALADTTQLYEKKIAELNKKLEDEHACFEGAVEQLDMVKKLLSDYQNSNQGQKEVHELCVKLKETRQLHESAVYEVQTLK 248 (600)
Q Consensus 169 ~~l~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~~~~~~~~~~~q~~~~~~~e~~~l~~~~~d~~~~~e~~~~el~~l~ 248 (600)
+.|......+..+..+|...|+.|......+++....+.. ....|...+.++...++. ..
T Consensus 37 ~ele~~~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L~~-------------~k~eLe~~l~el~~rlee-------ee 96 (129)
T 2fxo_A 37 KELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIK-------------NKIQLEAKVKEMNKRLED-------EE 96 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHH-------HH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHH-------HH
Confidence 3344566677778888999999998888888877776322 124445555555555443 33
Q ss_pred HHHHHHHHhhhhchHHHHHHHHhhhH
Q 007520 249 SEYKNLLEEKETMSDELQAARQRLLV 274 (600)
Q Consensus 249 ~~~~~l~~~~~~~~~el~~~~~~l~~ 274 (600)
..+..|......+..++..+.+.+.+
T Consensus 97 e~~~~L~~~kkkle~e~~~Lk~~led 122 (129)
T 2fxo_A 97 EMNAELTAKKRKLEDECSELKRDIDD 122 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555666665555543
No 169
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=79.88 E-value=33 Score=40.82 Aligned_cols=220 Identities=10% Similarity=0.031 Sum_probs=128.1
Q ss_pred cccCchHHHhcccCCCCccccchHHHHhhcCchhHHHHHhcCCHHHHHHhhC-CCCHHHHHHHHHHHHHhhC------Cc
Q 007520 306 YTKDYISKGSSRFGAPMSLQKSNPSRELSGQRATIAKICDEVGLPKILQLLT-SEDPDVQIHAVKVVANLAA------ED 378 (600)
Q Consensus 306 ~~~g~i~~Lv~~L~s~~~~~r~~a~~~L~~~~~~~~~i~e~GgV~~Lv~LL~-s~~~~vr~~Aa~aL~nLa~------~~ 378 (600)
++-..+..++..+-++++..|..|-..|..-.. ..++++.+..+|. +.++.+|-.|+.+|.+... .+
T Consensus 25 ~Dv~~Le~lv~~ly~p~~~~r~qA~~~L~q~q~------sp~aw~~~~~iL~~s~~~~vR~fAa~~L~~~I~~~W~~L~~ 98 (1073)
T 3gjx_A 25 LDINLLDNVVNCLYHGEGAQQRMAQEVLTHLKE------HPDAWTRVDTILEFSQNMNTKYYGLQILENVIKTRWKILPR 98 (1073)
T ss_dssp CSHHHHHHHHHTTTCSSHHHHHHHHHHHHTSSC------CSCHHHHHTCC---CCSHHHHHHHHHHHHHHHHHTGGGSCH
T ss_pred CCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHc------CchHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhhhCCH
Confidence 454556666666655555544444333432111 1334555556664 5689999999999998654 12
Q ss_pred chHHHHHHcCCHHHHHHHHcc----CCCHHHHHHHHHHHHHhhcC--CccHHHHHHhCchhhhHhhhccCCCHHHHHHHH
Q 007520 379 INQEKIVEEGGLDALLLLLRT----SQNTTILRVASGAIANLAMN--EMNQGLIMSRGGGQLLAKTASKTDDPQTLRMVA 452 (600)
Q Consensus 379 ~~~~~iv~~G~I~~Lv~lL~~----~~~~~v~~~Al~aL~NLa~~--~~~r~~I~~~G~I~~Lv~lL~~~~~~~v~~~Aa 452 (600)
+.+..+.+. .+..+...... ..++.++...+.+++.++.. |.. -.+.++.++..+.. ++.....++
T Consensus 99 e~~~~LR~~-Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P~~-----Wp~fi~dLv~~~~~--~~~~~~~~L 170 (1073)
T 3gjx_A 99 NQCEGIKKY-VVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPKH-----WPTFISDIVGASRT--SESLCQNNM 170 (1073)
T ss_dssp HHHHHHHHH-HHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTTTT-----CTTHHHHHHHHHHH--CHHHHHHHH
T ss_pred HHHHHHHHH-HHHHHHHHccCccccccchHHHHHHHHHHHHHHHHhChhh-----ccHHHHHHHHHhCC--CHHHHHHHH
Confidence 233333333 45555444321 12466777788888888754 332 23455666666632 445566667
Q ss_pred HHHHHHhCC---c-----------hhHHHHHHc--ChHHHHHHHH-cCCCHHHHHHHHHHHHHhhcCCchhhhhcchhhH
Q 007520 453 GALANLCGN---E-----------KLHTMLEED--GAIKALLAMV-RSGNIDVIAQVARGLANFAKCESRAIVQGQRKGR 515 (600)
Q Consensus 453 ~aL~nLa~~---~-----------e~r~~i~~~--G~i~~Lv~lL-~s~~~~v~~~A~~aL~nLa~~~~~~~~q~~~~~r 515 (600)
.+|..|+.. - ..+..+... ..+..+..+| ...++.+...++.+|..+...-+-
T Consensus 171 ~IL~~L~EEV~d~~~~~l~~~r~~~lk~~L~~~~~~Il~ll~~iL~~~~~~~lv~~~L~~L~~~~sWI~i---------- 240 (1073)
T 3gjx_A 171 VILKLLSEEVFDFSSGQITQVKAKHLKDSMCNEFSQIFQLCQFVMENSQNAPLVHATLETLLRFLNWIPL---------- 240 (1073)
T ss_dssp HHHHHHHHHHTTSHHHHBCHHHHHHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCT----------
T ss_pred HHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhcCH----------
Confidence 777777522 0 112223332 1233333344 367888888899999999876321
Q ss_pred HHHHhCCcHHHHH-HhhcCCCHHHHHHHHHHHHHhhc
Q 007520 516 SHLMEDSALEWLI-ANSKTNSASTRRHVELALCHLAQ 551 (600)
Q Consensus 516 ~~l~e~g~l~~Lv-~Ll~s~~~~v~~~Aa~aL~nLa~ 551 (600)
..+.+.+.++.|+ .++ .++.++..|+.+|+.+..
T Consensus 241 ~~i~~~~ll~~L~~~~L--~~~~~r~aA~dcL~eIv~ 275 (1073)
T 3gjx_A 241 GYIFETKLISTLIYKFL--NVPMFRNVSLKCLTEIAG 275 (1073)
T ss_dssp HHHHSSSHHHHHHHHTS--SSHHHHHHHHHHHHHHHH
T ss_pred HHhccchHHHHHHHHhc--CChHHHHHHHHHHHHHHh
Confidence 2366778888774 555 467899999999999864
No 170
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=79.76 E-value=16 Score=31.78 Aligned_cols=48 Identities=27% Similarity=0.284 Sum_probs=34.4
Q ss_pred HHHHHHHHhHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 007520 22 LETQVDHLTAEIERKQKLRENDKCELEKLLRECQISYDEAKDNLVTQVELLTAKIEMQQ 80 (600)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (600)
-+.+.|+|.-|+++.+ .++++...|+|..|...+. .|..|.+++..+-
T Consensus 13 rD~~Ie~Lkreie~lk-------~ele~l~~E~q~~v~ql~~----~i~~Le~eL~e~r 60 (120)
T 3i00_A 13 KDHLIERLYREISGLK-------AQLENMKTESQRVVLQLKG----HVSELEADLAEQQ 60 (120)
T ss_dssp HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 3577888888888876 4566888899999998888 4445555554443
No 171
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=79.45 E-value=18 Score=38.98 Aligned_cols=121 Identities=17% Similarity=0.194 Sum_probs=84.0
Q ss_pred CCCHHHHHHHHHHHHHhhC-CcchHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcCCccHHHHHHhCchhhhH
Q 007520 358 SEDPDVQIHAVKVVANLAA-EDINQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMNEMNQGLIMSRGGGQLLA 436 (600)
Q Consensus 358 s~~~~vr~~Aa~aL~nLa~-~~~~~~~iv~~G~I~~Lv~lL~~~~~~~v~~~Al~aL~NLa~~~~~r~~I~~~G~I~~Lv 436 (600)
.+++..+.-|+..|..... +|..... ++.+++.++. +.+..|+..|...|..+|.+ ++... .+..|+
T Consensus 39 kg~~k~K~LaaQ~I~kffk~FP~l~~~-----Ai~a~lDLcE-Ded~~IR~qaik~Lp~~ck~-~~i~k-----iaDvL~ 106 (507)
T 3u0r_A 39 KGGTKEKRLAAQFIPKFFKHFPELADS-----AINAQLDLCE-DEDVSIRRQAIKELPQFATG-ENLPR-----VADILT 106 (507)
T ss_dssp GSCHHHHHHHHHHHHHHGGGCGGGHHH-----HHHHHHHHHT-CSSHHHHHHHHHHGGGGCCT-TCHHH-----HHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHh-cccHHHHHHHHHhhHHHhhh-hhhhh-----HHHHHH
Confidence 4568889999999998776 7776543 4677889988 77899999999999999988 55333 345678
Q ss_pred hhhccCCCHHHHHHHHHHHHHHh-CCchhHHHHHHcChHHHHHHHHcCCCHHHHHHHHHHHHHh
Q 007520 437 KTASKTDDPQTLRMVAGALANLC-GNEKLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANF 499 (600)
Q Consensus 437 ~lL~~~~~~~v~~~Aa~aL~nLa-~~~e~r~~i~~~G~i~~Lv~lL~s~~~~v~~~A~~aL~nL 499 (600)
++|. ++++.....+-.+|..|- .++ .|.+..++.-+..++..+|..++..|+.=
T Consensus 107 QlLq-tdd~~E~~~V~~sL~sllk~Dp--------k~tl~~lf~~i~~~~e~~Rer~lkFi~~k 161 (507)
T 3u0r_A 107 QLLQ-TDDSAEFNLVNNALLSIFKMDA--------KGTLGGLFSQILQGEDIVRERAIKFLSTK 161 (507)
T ss_dssp HHTT-CCCHHHHHHHHHHHHHHHHHCH--------HHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHh-ccchHHHHHHHHHHHHHHhcCh--------HHHHHHHHHHHcccchHHHHHHHHHHHHH
Confidence 8885 577766666666666543 222 23445555555556677777776666443
No 172
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=78.57 E-value=4.5 Score=30.72 Aligned_cols=39 Identities=23% Similarity=0.227 Sum_probs=31.6
Q ss_pred HHHhhhHHHHHHHHHhHHHHHHHhhhHHHHHHHHHhhhh
Q 007520 96 ESQISYDESMRNLVTRSEFLEKENAHLELEVEKILGELN 134 (600)
Q Consensus 96 ~~~~~~~~~~~~l~~~~~~~~~e~~~~~~~~~~~~~~~~ 134 (600)
+|+..-.+-+..|+.++++|..+|..|..++..|..++.
T Consensus 15 k~R~rKk~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~ 53 (61)
T 1t2k_D 15 RSRQKRKVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVA 53 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555577789999999999999999999999877753
No 173
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=77.94 E-value=52 Score=38.61 Aligned_cols=187 Identities=7% Similarity=0.093 Sum_probs=108.6
Q ss_pred CCHHHHHHhhCCC---CHHHHHHHHHHHHHhhC--Ccc----hHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhh
Q 007520 347 VGLPKILQLLTSE---DPDVQIHAVKVVANLAA--EDI----NQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLA 417 (600)
Q Consensus 347 GgV~~Lv~LL~s~---~~~vr~~Aa~aL~nLa~--~~~----~~~~iv~~G~I~~Lv~lL~~~~~~~v~~~Al~aL~NLa 417 (600)
++......+|... ++.+|..|+.+|.+... .++ .+..+.+. .+..+...-....+..++...+.+|..++
T Consensus 40 ~aw~~~~~iL~~~~~~~~~vr~fa~~~L~~~I~~l~~e~~~~~~~~lr~~-ll~~l~~~~~~~~~~~IrnKL~~~la~l~ 118 (980)
T 3ibv_A 40 TGWKICHEIFSEKTKYKPSTRLICLQTLSEKVREWNNESNLLELQMIRDS-VWSYIKELSFLDEPAYISNAVQHLLTLLF 118 (980)
T ss_dssp THHHHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHCCTTTSHHHHHHHHHH-HHHHHHHCCSTTSCTHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHHHHHH-HHHHHHHhcCCCCcHHHHHHHHHHHHHHH
Confidence 4567777777543 78999999999997554 333 34333333 34433331101235568888888888887
Q ss_pred cC--CccHHHHHHhCchhhhHhhhccCCCHHHHHHHHHHHHHHh---CCc-------------hhHHHHHHcC---hHHH
Q 007520 418 MN--EMNQGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLC---GNE-------------KLHTMLEEDG---AIKA 476 (600)
Q Consensus 418 ~~--~~~r~~I~~~G~I~~Lv~lL~~~~~~~v~~~Aa~aL~nLa---~~~-------------e~r~~i~~~G---~i~~ 476 (600)
.. |.. -.+.++.|+.++..++........+.+|..++ .+. ..+..+.+.. +++.
T Consensus 119 ~~~~p~~-----Wp~~i~~l~~~~~~~~~~~~~~~~LriL~~i~EEv~~~~~~~~~~~~~r~~~lkd~m~~~~~~~i~~~ 193 (980)
T 3ibv_A 119 LQLYPSN-----WNDFFASLQGVIAASSQSEFSNFYLKVLLSIGDEIADSLVLKTDVQIQKDNLVKDAIRANDMSDIVSF 193 (980)
T ss_dssp HHHTTTT-----CTTHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCSCCCHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHhCccc-----CchHHHHHHHHhcCCChhHHHHHHHHHHHHhHHHHHhcccccCHHHHhhhHHHHHHHHhccHHHHHHH
Confidence 54 221 13455566666643221123333444444333 110 1122333221 1333
Q ss_pred HHHHH----cCCCHHHHHHHHHHHHHhhcCCchhhhhcchhhHHHHHhCCcHHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 007520 477 LLAMV----RSGNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSKTNSASTRRHVELALCHLAQ 551 (600)
Q Consensus 477 Lv~lL----~s~~~~v~~~A~~aL~nLa~~~~~~~~q~~~~~r~~l~e~g~l~~Lv~Ll~s~~~~v~~~Aa~aL~nLa~ 551 (600)
++.+| .+.++.++..++.+|......-+ -..+...+.++.+..++.+ +.++..|+.+|+.+..
T Consensus 194 ~~~iL~~~~~~~~~~l~~~~L~~l~s~i~wi~----------~~~i~~~~ll~~l~~~L~~--~~~r~~A~ecL~ei~~ 260 (980)
T 3ibv_A 194 VYEMMLAYSNAKNYGTVGLCLQVYAQWVSWIN----------INLIVNEPCMNLLYSFLQI--EELRCAACETMTEIVN 260 (980)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSC----------HHHHHCHHHHHHHHHHTTS--HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHHHhhcC----------HHhhhcchHHHHHHHHcCC--hHHHHHHHHHHHHHHH
Confidence 33333 34788888999999999876532 1234556788888888874 7899999999999954
No 174
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=77.70 E-value=36 Score=36.62 Aligned_cols=22 Identities=14% Similarity=0.291 Sum_probs=9.5
Q ss_pred HHHHHHHhhhHHHHHHHHHHHH
Q 007520 55 QISYDEAKDNLVTQVELLTAKI 76 (600)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~ 76 (600)
|..+.+.++.|..-|+.||.+|
T Consensus 52 QglLdkqErDltkrINELKnqL 73 (562)
T 3ghg_A 52 KGLIDEVNQDFTNRINKLKNSL 73 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHhhcCcHHHHHHHHHHHH
Confidence 3344444444444444444443
No 175
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=77.28 E-value=44 Score=39.74 Aligned_cols=221 Identities=13% Similarity=0.047 Sum_probs=125.4
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHhhCCcchHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcC-----CccH
Q 007520 349 LPKILQLLTSEDPDVQIHAVKVVANLAAEDINQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMN-----EMNQ 423 (600)
Q Consensus 349 V~~Lv~LL~s~~~~vr~~Aa~aL~nLa~~~~~~~~iv~~G~I~~Lv~lL~~~~~~~v~~~Al~aL~NLa~~-----~~~r 423 (600)
+..++..+-+++...|..|-..|..+-.+++. ...+..+|..+.++.++..|+.+|.+.... +...
T Consensus 30 Le~lv~~ly~p~~~~r~qA~~~L~q~q~sp~a---------w~~~~~iL~~s~~~~vR~fAa~~L~~~I~~~W~~L~~e~ 100 (1073)
T 3gjx_A 30 LDNVVNCLYHGEGAQQRMAQEVLTHLKEHPDA---------WTRVDTILEFSQNMNTKYYGLQILENVIKTRWKILPRNQ 100 (1073)
T ss_dssp HHHHHHTTTCSSHHHHHHHHHHHHTSSCCSCH---------HHHHTCC---CCSHHHHHHHHHHHHHHHHHTGGGSCHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHcCchH---------HHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhhhCCHHH
Confidence 55666666667788888888888776665543 344445566567889999999999998653 3333
Q ss_pred HHHHHhCchhhhHhhhcc----CCCHHHHHHHHHHHHHHhCC--chhHHHHHHcChHHHHHHHHcCCCHHHHHHHHHHHH
Q 007520 424 GLIMSRGGGQLLAKTASK----TDDPQTLRMVAGALANLCGN--EKLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLA 497 (600)
Q Consensus 424 ~~I~~~G~I~~Lv~lL~~----~~~~~v~~~Aa~aL~nLa~~--~e~r~~i~~~G~i~~Lv~lL~s~~~~v~~~A~~aL~ 497 (600)
..-++...+..+...... ..++.++...+.++..++.. |+.- .+.++-++..+.+ ++.....++.+|.
T Consensus 101 ~~~LR~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P~~W-----p~fi~dLv~~~~~-~~~~~~~~L~IL~ 174 (1073)
T 3gjx_A 101 CEGIKKYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPKHW-----PTFISDIVGASRT-SESLCQNNMVILK 174 (1073)
T ss_dssp HHHHHHHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTTTTC-----TTHHHHHHHHHHH-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCccccccchHHHHHHHHHHHHHHHHhChhhc-----cHHHHHHHHHhCC-CHHHHHHHHHHHH
Confidence 333333345555544321 12456666677777776522 2110 2456666666643 4455667788888
Q ss_pred HhhcCCch---h-hh-hcchhhHHHHHhCCcHHHHHHh----h-cCCCHHHHHHHHHHHHHhhcCchhHHHHHHcccHHH
Q 007520 498 NFAKCESR---A-IV-QGQRKGRSHLMEDSALEWLIAN----S-KTNSASTRRHVELALCHLAQNEDNARDFISRGGAKE 567 (600)
Q Consensus 498 nLa~~~~~---~-~~-q~~~~~r~~l~e~g~l~~Lv~L----l-~s~~~~v~~~Aa~aL~nLa~~~~~~~~lv~~G~l~~ 567 (600)
.|+..-.+ . .. ......+..|... ++.++.+ + ...++.+...+..+|..+..--+. ..++..+.++.
T Consensus 175 ~L~EEV~d~~~~~l~~~r~~~lk~~L~~~--~~~Il~ll~~iL~~~~~~~lv~~~L~~L~~~~sWI~i-~~i~~~~ll~~ 251 (1073)
T 3gjx_A 175 LLSEEVFDFSSGQITQVKAKHLKDSMCNE--FSQIFQLCQFVMENSQNAPLVHATLETLLRFLNWIPL-GYIFETKLIST 251 (1073)
T ss_dssp HHHHHHTTSHHHHBCHHHHHHHHHHHHHT--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCT-HHHHSSSHHHH
T ss_pred HHHHHHHhcccccccHHHHHHHHHHHHHH--HHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhcCH-HHhccchHHHH
Confidence 87643000 0 00 0012233444443 4444443 3 345778888888888888654433 34566677776
Q ss_pred H-HHhhhcCChHHHHHHHHHHHhc
Q 007520 568 L-VQISIESSREDIRNLAKKTMKS 590 (600)
Q Consensus 568 L-v~ll~~~~~~~ir~~A~~~L~~ 590 (600)
| ..++. .+..+..|...|..
T Consensus 252 L~~~~L~---~~~~r~aA~dcL~e 272 (1073)
T 3gjx_A 252 LIYKFLN---VPMFRNVSLKCLTE 272 (1073)
T ss_dssp HHHHTSS---SHHHHHHHHHHHHH
T ss_pred HHHHhcC---ChHHHHHHHHHHHH
Confidence 6 35542 35577777755543
No 176
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=77.16 E-value=5.2 Score=30.64 Aligned_cols=40 Identities=23% Similarity=0.302 Sum_probs=32.7
Q ss_pred HHHHhhhHHHHHHHHHhHHHHHHHhhhHHHHHHHHHhhhh
Q 007520 95 RESQISYDESMRNLVTRSEFLEKENAHLELEVEKILGELN 134 (600)
Q Consensus 95 ~~~~~~~~~~~~~l~~~~~~~~~e~~~~~~~~~~~~~~~~ 134 (600)
.+|+..-.+-+..|+.+++.|..+|..|..++..|..++.
T Consensus 15 ~rcR~rKk~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~ 54 (63)
T 2wt7_A 15 AKCRNRRRELTDTLQAETDQLEDEKSALQTEIANLLKEKE 54 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566666677889999999999999999999988776643
No 177
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=76.96 E-value=5.3 Score=30.44 Aligned_cols=40 Identities=15% Similarity=0.187 Sum_probs=32.9
Q ss_pred HHHhhhHHHHHHHHHhHHHHHHHhhhHHHHHHHHHhhhhh
Q 007520 96 ESQISYDESMRNLVTRSEFLEKENAHLELEVEKILGELNH 135 (600)
Q Consensus 96 ~~~~~~~~~~~~l~~~~~~~~~e~~~~~~~~~~~~~~~~~ 135 (600)
+|+..-.+-+..|+.+++.|..+|..|..++..|..++.+
T Consensus 15 k~R~rKk~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~ 54 (62)
T 1jnm_A 15 KSRKRKLERIARLEEKVKTLKAQNSELASTANMLREQVAQ 54 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555556778899999999999999999999998877543
No 178
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=76.93 E-value=34 Score=40.25 Aligned_cols=165 Identities=13% Similarity=0.099 Sum_probs=97.2
Q ss_pred CCHHHHHHHHHHHHHhhcCCccHHHHHHhCchhhhHhhhccCCCHHHHHHHHHHHHHHhC------CchhHHHHHHcChH
Q 007520 401 QNTTILRVASGAIANLAMNEMNQGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLCG------NEKLHTMLEEDGAI 474 (600)
Q Consensus 401 ~~~~v~~~Al~aL~NLa~~~~~r~~I~~~G~I~~Lv~lL~~~~~~~v~~~Aa~aL~nLa~------~~e~r~~i~~~G~i 474 (600)
++...+..|-..|..+-.+| +++..+..+|..+.++.++..|+.+|.|... +++.+..+ ....+
T Consensus 28 p~~~~r~~Ae~~L~~~~~~p---------~~~~~l~~iL~~s~~~~vr~~aa~~Lk~~i~~~W~~l~~~~~~~i-r~~ll 97 (1049)
T 3m1i_C 28 GSGVQQKQAQEILTKFQDNP---------DAWQKADQILQFSTNPQSKFIALSILDKLITRKWKLLPNDHRIGI-RNFVV 97 (1049)
T ss_dssp CCHHHHHHHHHHHHHHHHST---------TGGGGHHHHHHHCSCHHHHHHHHHHHHHHHHHTGGGSCHHHHHHH-HHHHH
T ss_pred CChHHHHHHHHHHHHHHhCc---------hHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhhCccCCHHHHHHH-HHHHH
Confidence 34556777887887776554 4777788888666788899999999999863 22333332 22333
Q ss_pred HHHHHHHcCC-----CHHHHHHHHHHHHHhhcCC-chhhhhcchhhHHHHHhCCcHHHHHHhhcCCCHHHHHHHHHHHHH
Q 007520 475 KALLAMVRSG-----NIDVIAQVARGLANFAKCE-SRAIVQGQRKGRSHLMEDSALEWLIANSKTNSASTRRHVELALCH 548 (600)
Q Consensus 475 ~~Lv~lL~s~-----~~~v~~~A~~aL~nLa~~~-~~~~~q~~~~~r~~l~e~g~l~~Lv~Ll~s~~~~v~~~Aa~aL~n 548 (600)
..+...-.++ ++.++...+.+++.++..+ |.. =.+.++.|+.++. .++..+..+..+|..
T Consensus 98 ~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p~~-------------Wp~ll~~L~~~~~-~~~~~~~~~l~~L~~ 163 (1049)
T 3m1i_C 98 GMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQN-------------WPEFIPELIGSSS-SSVNVCENNMIVLKL 163 (1049)
T ss_dssp HHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTTTT-------------CTTHHHHHHHHHT-TCHHHHHHHHHHHHH
T ss_pred HHHHhhCCccccchhhHHHHHHHHHHHHHHHHHhCccc-------------chHHHHHHHHHHc-cChHHHHHHHHHHHH
Confidence 3333322111 4678888999999988652 110 0357788888886 566667777777777
Q ss_pred hhcC-----ch----hH-----HHHHH--cccHHHHHHhhhcCChHHHHHHHHHHHh
Q 007520 549 LAQN-----ED----NA-----RDFIS--RGGAKELVQISIESSREDIRNLAKKTMK 589 (600)
Q Consensus 549 La~~-----~~----~~-----~~lv~--~G~l~~Lv~ll~~~~~~~ir~~A~~~L~ 589 (600)
|+.. .+ .+ ..+.. ...+..+..++.......++..|..++.
T Consensus 164 l~eev~~~~~~~~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~~~~~~~~~aL~~l~ 220 (1049)
T 3m1i_C 164 LSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGSSSSLIVATLESLL 220 (1049)
T ss_dssp HHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred HHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 6521 11 11 11222 1133344555555444567777776664
No 179
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=75.72 E-value=6.3 Score=30.23 Aligned_cols=42 Identities=19% Similarity=0.188 Sum_probs=33.7
Q ss_pred HHHhhhHHHHHHHHHhHHHHHHHhhhHHHHHHHHHhhhhhhh
Q 007520 96 ESQISYDESMRNLVTRSEFLEKENAHLELEVEKILGELNHQK 137 (600)
Q Consensus 96 ~~~~~~~~~~~~l~~~~~~~~~e~~~~~~~~~~~~~~~~~~~ 137 (600)
+|+..-.+....|+.+++.|+.+|..|+.++..|..++..-+
T Consensus 16 R~R~KKk~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk 57 (63)
T 1ci6_A 16 RYRQKKRAEQEALTGECKELEKKNEALKERADSLAKEIQYLK 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555577789999999999999999999999888865443
No 180
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=75.36 E-value=25 Score=36.31 Aligned_cols=98 Identities=10% Similarity=0.160 Sum_probs=55.1
Q ss_pred hhhhhhhhhhhHHHHHHHHHHhHhHHHhhhhhHHHHHHHHHHHhhhhhcccchh----h-HHHHHHHHHHHHHHHHHHHH
Q 007520 168 QKALADTTQLYEKKIAELNKKLEDEHACFEGAVEQLDMVKKLLSDYQNSNQGQK----E-VHELCVKLKETRQLHESAVY 242 (600)
Q Consensus 168 ~~~l~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~~~~~~~~~~~q~~~~~~~----e-~~~l~~~~~d~~~~~e~~~~ 242 (600)
+..|..+.+.|...|.+|++.|.+=..-...+-.-+..++.++-.-|+..+..+ | ...|+..+..+..-...+.+
T Consensus 55 qg~Ldk~er~~~~rIe~L~~~L~~~s~s~~~~~~y~~~~~~~lk~~~~q~~dndn~~~e~s~eLe~~i~~lk~~V~~q~~ 134 (390)
T 1deq_A 55 KGLIDEVDQDFTSRINKLRDSLFNYQKNSKDSNTLTKNIVELMRGDFAKANNNDNTFKQINEDLRSRIEILRRKVIEQVQ 134 (390)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 555566667777777777777776544444444444444444443333322222 2 25666777777777777777
Q ss_pred HHHHHHHHHHHHHHhhhhchHHH
Q 007520 243 EVQTLKSEYKNLLEEKETMSDEL 265 (600)
Q Consensus 243 el~~l~~~~~~l~~~~~~~~~el 265 (600)
.|+.|+..+.++....+.++..|
T Consensus 135 ~ir~Lq~~l~~q~~kiqRLE~~I 157 (390)
T 1deq_A 135 RINLLQKNVRDQLVDMKRLEVDI 157 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777766655554444444333
No 181
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=75.32 E-value=38 Score=29.27 Aligned_cols=85 Identities=15% Similarity=0.149 Sum_probs=46.9
Q ss_pred HHHhHHHHHHHHHHh-HHHHHHHHhhhccHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhchhHHHHHHH
Q 007520 16 ESLCRKLETQVDHLT-AEIERKQKLRENDKCELEKLLRECQISYDEAKDNLVTQVELLTAKIEMQQKLRENDKYEFEKQL 94 (600)
Q Consensus 16 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (600)
.|=..-||.|++.|. .|.+|+.+.+- .-..|+...++- ..++.+++..+..- ...
T Consensus 8 ~~~l~~Leae~q~L~~~E~qry~~eka--------~AE~A~~~La~~--------~~l~~~i~er~~~i----~~~---- 63 (119)
T 3etw_A 8 VGELQALDAEYQNLANQEEARFNEERA--------QADAARQALAQN--------EQVYNELSQRAQRL----QAE---- 63 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHH--------HHHHHHHHHHHHHH----HHH----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHH--------HHHHHHHHHHHHHH----HHh----
Confidence 344667888888886 78888877663 001233333332 33333444333322 111
Q ss_pred HHHHhhhHHHHHHHHHhHHHHHHHhhhHHHHHHH
Q 007520 95 RESQISYDESMRNLVTRSEFLEKENAHLELEVEK 128 (600)
Q Consensus 95 ~~~~~~~~~~~~~l~~~~~~~~~e~~~~~~~~~~ 128 (600)
+-...|...|..|+.+|+.+ ...|..+|+.
T Consensus 64 -~~~~~yk~~y~~l~k~Y~~~---~keLd~~ik~ 93 (119)
T 3etw_A 64 -ANTRFYKSQYQELASKYEDA---LKKLEAEMEQ 93 (119)
T ss_dssp -TTSCTTHHHHHHHHHHHHHH---HHHHHHHHHH
T ss_pred -hccchHHHHHHHHHHHHHHH---HHHHHHHHHH
Confidence 13457889999999998433 3345555555
No 182
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=74.71 E-value=43 Score=29.22 Aligned_cols=26 Identities=15% Similarity=0.128 Sum_probs=12.3
Q ss_pred HHHhHHHHHHHhhhHHHHHHHHHhhh
Q 007520 108 LVTRSEFLEKENAHLELEVEKILGEL 133 (600)
Q Consensus 108 l~~~~~~~~~e~~~~~~~~~~~~~~~ 133 (600)
.+.+...|..+.+.++.++.+|...|
T Consensus 95 eee~~~~L~~~kkkle~e~~~Lk~~l 120 (129)
T 2fxo_A 95 EEEMNAELTAKKRKLEDECSELKRDI 120 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444555555555555544443
No 183
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=72.79 E-value=20 Score=35.08 Aligned_cols=101 Identities=15% Similarity=0.099 Sum_probs=64.3
Q ss_pred CCCHHHHHHHHHHHHHhhcCCc-cHHHHHHhCchhhhHhhh----ccC---CCHHHHHHHHHHHHHHhCCc-hhHHHHHH
Q 007520 400 SQNTTILRVASGAIANLAMNEM-NQGLIMSRGGGQLLAKTA----SKT---DDPQTLRMVAGALANLCGNE-KLHTMLEE 470 (600)
Q Consensus 400 ~~~~~v~~~Al~aL~NLa~~~~-~r~~I~~~G~I~~Lv~lL----~~~---~~~~v~~~Aa~aL~nLa~~~-e~r~~i~~ 470 (600)
..++..+-.++++++|+..++. .+..+........++..+ .+. .+..++.+++.++.|++..- ..+. +
T Consensus 101 ~~~~~~~ml~lR~l~NlF~~~~~g~~l~~~~~~~~~i~~~i~~~~~~~~~~~~~nl~iA~ATl~~N~av~~~~~~~---~ 177 (253)
T 3gae_A 101 NKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS---D 177 (253)
T ss_dssp CSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHHTSCS---C
T ss_pred CCchhHHHHHHHHHHHcccCCchHHHHHhcchhHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHhhccc---h
Confidence 4467788889999999999988 676665543333444333 111 24467788888999997320 0000 1
Q ss_pred cChHHHHHHHHcC---------CCHHHHHHHHHHHHHhhcCC
Q 007520 471 DGAIKALLAMVRS---------GNIDVIAQVARGLANFAKCE 503 (600)
Q Consensus 471 ~G~i~~Lv~lL~s---------~~~~v~~~A~~aL~nLa~~~ 503 (600)
......++.++.. .+++....++-+|++|...+
T Consensus 178 ~e~~~~l~~~i~~~~~~~e~~~~d~Ea~yR~LvAlGtL~~~~ 219 (253)
T 3gae_A 178 LELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVE 219 (253)
T ss_dssp TTHHHHHHHHHHTTTTTSHHHHHSHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHhCc
Confidence 2344455555541 37788899999999998654
No 184
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=72.79 E-value=9.7 Score=41.98 Aligned_cols=139 Identities=13% Similarity=0.156 Sum_probs=89.3
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHhhCCcchHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcCCccHHHHHH
Q 007520 349 LPKILQLLTSEDPDVQIHAVKVVANLAAEDINQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMNEMNQGLIMS 428 (600)
Q Consensus 349 V~~Lv~LL~s~~~~vr~~Aa~aL~nLa~~~~~~~~iv~~G~I~~Lv~lL~~~~~~~v~~~Al~aL~NLa~~~~~r~~I~~ 428 (600)
+..++..+.....++|..+.-.|.-+.. -... -.++++.++..|. +.+.+|+..|+.+|.-++ .++.-..++.
T Consensus 265 L~qLV~~l~~~~WEVRHGGLLGLKYL~D--LL~~---Ld~Vv~aVL~GL~-D~DDDVRAVAAetLiPIA-~p~~l~~LL~ 337 (800)
T 3oc3_A 265 IEQLVGFLDSGDWQVQFSGLIALGYLKE--FVED---KDGLCRKLVSLLS-SPDEDIKLLSAELLCHFP-ITDSLDLVLE 337 (800)
T ss_dssp HHHHTTGGGCSCHHHHHHHHHHHHHTGG--GCCC---HHHHHHHHHHHTT-CSSHHHHHHHHHHHTTSC-CSSTHHHHHH
T ss_pred HHHHHhhcCCCCeeehhhhHHHHHHHHH--HHHH---HHHHHHHHHhhcC-CcccHHHHHHHHHhhhhc-chhhHHHHHH
Confidence 4444445577889999888888887721 1111 1235777778887 678899999999999999 4444444444
Q ss_pred hCchhhhHhhhccCCCHHHHHHHHHHHHHHhCCchhHHHHHHcChHHHHHHHHcCCCHHHHHHHHHHHHHhh
Q 007520 429 RGGGQLLAKTASKTDDPQTLRMVAGALANLCGNEKLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFA 500 (600)
Q Consensus 429 ~G~I~~Lv~lL~~~~~~~v~~~Aa~aL~nLa~~~e~r~~i~~~G~i~~Lv~lL~s~~~~v~~~A~~aL~nLa 500 (600)
. .|..|..+ .+ -+ .-.......|+.|+..+.. .-.....+|.|..++++.-+.||..++.+|..+.
T Consensus 338 i-LWd~L~~L-DD-LS-ASTgSVMdLLAkL~s~p~~--a~~dp~LVPRL~PFLRHtITSVR~AVL~TL~tfL 403 (800)
T 3oc3_A 338 K-CWKNIESE-EL-IS-VSKTSNLSLLTKIYRENPE--LSIPPERLKDIFPCFTSPVPEVRTSILNMVKNLS 403 (800)
T ss_dssp H-HHHHHHTC-CS-CC-TTHHHHHHHHHHHHHHCTT--CCCCSGGGGGTGGGGTCSSHHHHHHHHHHTTTCC
T ss_pred H-HHHHhhhh-cc-cc-hhhHHHHHHHHHHHcCCcc--cccChHHHHHHHhhhcCCcHHHHHHHHHHHHHHH
Confidence 3 34444433 11 11 1122334466666644321 0112378899999999999999999999998876
No 185
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=72.59 E-value=39 Score=28.16 Aligned_cols=70 Identities=21% Similarity=0.247 Sum_probs=51.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHhhhHHHHhhhhHHHHHHHHhc
Q 007520 222 EVHELCVKLKETRQLHESAVYEVQTLKSEYKNLLEEKETMSDELQAARQRLLVEEKQRKAIEYELVKLKK 291 (600)
Q Consensus 222 e~~~l~~~~~d~~~~~e~~~~el~~l~~~~~~l~~~~~~~~~el~~~~~~l~~e~~~~~~le~~~~~l~~ 291 (600)
...+++..+.++.......+.++..|+.++..+........+.+......+....+.....+.+++.+..
T Consensus 24 ~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~AE~evasLnR 93 (101)
T 3u59_A 24 RAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAEAEVASLNR 93 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777777788888888888888888887777777777777777777777776666767777777653
No 186
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=72.56 E-value=1.1e+02 Score=36.03 Aligned_cols=213 Identities=10% Similarity=0.056 Sum_probs=115.9
Q ss_pred CCCHHHHHHHHHHHHHhhCCcchHHHHHHcCCHHHHHHHHccCC--CHHHHHHHHHHHHHhhcC-Ccc----HHHHHHhC
Q 007520 358 SEDPDVQIHAVKVVANLAAEDINQEKIVEEGGLDALLLLLRTSQ--NTTILRVASGAIANLAMN-EMN----QGLIMSRG 430 (600)
Q Consensus 358 s~~~~vr~~Aa~aL~nLa~~~~~~~~iv~~G~I~~Lv~lL~~~~--~~~v~~~Al~aL~NLa~~-~~~----r~~I~~~G 430 (600)
+.++..|..|-..|..+-..++ +......+|...+ +..++..|+.+|.+.... +.. ....+...
T Consensus 19 ~sd~~~r~~A~~~L~~~q~sp~---------aw~~~~~iL~~~~~~~~~vr~fa~~~L~~~I~~l~~e~~~~~~~~lr~~ 89 (980)
T 3ibv_A 19 SVGPIIKQQATDFIGSLRSSST---------GWKICHEIFSEKTKYKPSTRLICLQTLSEKVREWNNESNLLELQMIRDS 89 (980)
T ss_dssp TSCHHHHHHHHHHHHHHHHSTT---------HHHHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHCCTTTSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcChh---------HHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHHHHHH
Confidence 3478888888888887666543 4555666776443 788999999998877652 222 23333333
Q ss_pred chhhhHhhhccCCCHHHHHHHHHHHHHHhCC--chhHHHHHHcChHHHHHHHHcCCCH-HHHHHHHHHHHHhhcC--Cch
Q 007520 431 GGQLLAKTASKTDDPQTLRMVAGALANLCGN--EKLHTMLEEDGAIKALLAMVRSGNI-DVIAQVARGLANFAKC--ESR 505 (600)
Q Consensus 431 ~I~~Lv~lL~~~~~~~v~~~Aa~aL~nLa~~--~e~r~~i~~~G~i~~Lv~lL~s~~~-~v~~~A~~aL~nLa~~--~~~ 505 (600)
.+..+...-.....+-++...+.+|..++.. +..- .+.++.++.++.++++ ......+++|..+... +..
T Consensus 90 ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~~~p~~W-----p~~i~~l~~~~~~~~~~~~~~~~LriL~~i~EEv~~~~ 164 (980)
T 3ibv_A 90 VWSYIKELSFLDEPAYISNAVQHLLTLLFLQLYPSNW-----NDFFASLQGVIAASSQSEFSNFYLKVLLSIGDEIADSL 164 (980)
T ss_dssp HHHHHHHCCSTTSCTHHHHHHHHHHHHHHHHHTTTTC-----TTHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhCcccC-----chHHHHHHHHhcCCChhHHHHHHHHHHHHhHHHHHhcc
Confidence 4444444110123446777777787776522 1111 2466677777764333 3344455555544321 000
Q ss_pred -----hhhhcchhhHHHHHhC-------CcHHHHHHhhcCCCHHHHHHHHHHHHHhhcCchhHHHHHHcccHHHHHHhhh
Q 007520 506 -----AIVQGQRKGRSHLMED-------SALEWLIANSKTNSASTRRHVELALCHLAQNEDNARDFISRGGAKELVQISI 573 (600)
Q Consensus 506 -----~~~q~~~~~r~~l~e~-------g~l~~Lv~Ll~s~~~~v~~~Aa~aL~nLa~~~~~~~~lv~~G~l~~Lv~ll~ 573 (600)
...+.....+..|.+. +++..|.....+.++.+...+..+|......-+. ..++..+.++.+..++.
T Consensus 165 ~~~~~~~~~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~wi~~-~~i~~~~ll~~l~~~L~ 243 (980)
T 3ibv_A 165 VLKTDVQIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSWINI-NLIVNEPCMNLLYSFLQ 243 (980)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCH-HHHHCHHHHHHHHHHTT
T ss_pred cccCHHHHhhhHHHHHHHHhccHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhcCH-HhhhcchHHHHHHHHcC
Confidence 0000001123333321 2333333333446788888888888887654332 44455667777777775
Q ss_pred cCChHHHHHHHHHHH
Q 007520 574 ESSREDIRNLAKKTM 588 (600)
Q Consensus 574 ~~~~~~ir~~A~~~L 588 (600)
. +.++..|...|
T Consensus 244 ~---~~~r~~A~ecL 255 (980)
T 3ibv_A 244 I---EELRCAACETM 255 (980)
T ss_dssp S---HHHHHHHHHHH
T ss_pred C---hHHHHHHHHHH
Confidence 4 55677766554
No 187
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=71.96 E-value=42 Score=28.06 Aligned_cols=68 Identities=15% Similarity=0.236 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHhhhHHHHhhhhHHHHHHHHh
Q 007520 223 VHELCVKLKETRQLHESAVYEVQTLKSEYKNLLEEKETMSDELQAARQRLLVEEKQRKAIEYELVKLK 290 (600)
Q Consensus 223 ~~~l~~~~~d~~~~~e~~~~el~~l~~~~~~l~~~~~~~~~el~~~~~~l~~e~~~~~~le~~~~~l~ 290 (600)
..+++..+.++.......+.|+..|..++..+........+.|......+.+..+.....+.+++.+.
T Consensus 25 ae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~~aE~ev~~L~ 92 (101)
T 3u1c_A 25 AEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAAKAESEVASLN 92 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56667777777777777788888888777766666666677777766667666666666666666665
No 188
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=71.90 E-value=60 Score=34.67 Aligned_cols=63 Identities=11% Similarity=0.064 Sum_probs=33.1
Q ss_pred HHHHhhhccHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHH
Q 007520 35 RKQKLRENDKCELEKLLRECQISYDEAKDNLVTQVELLTAKIEMQQKLRENDKYEFEKQLRESQ 98 (600)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (600)
+|+...+.+-.+|+.++.+..++.+++.. |...|..-=.+.+.|+...++-...+..++.+.+
T Consensus 93 k~q~~V~~~LqeLe~~l~~lsn~Ts~~~~-~i~~Iq~slk~~Q~Qi~en~n~~~~~~~~~e~~~ 155 (464)
T 1m1j_B 93 KQEKTVKPVLRDLKDRVAKFSDTSTTMYQ-YVNMIDNKLVKTQKQRKDNDIILSEYNTEMELHY 155 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhhHhHHHHHHHHHHHHhhhhhHHHH-HHHHHHHHhhcccccccchhhHHHHHHHHHHHHH
Confidence 56666666667888888777777766554 2212222222333444444444444444444333
No 189
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=71.89 E-value=22 Score=42.27 Aligned_cols=164 Identities=11% Similarity=0.062 Sum_probs=101.7
Q ss_pred HHHHHHhhCC----CCHHHHHHHHHHHHHhhC----CcchHHHHHHcCCHHHHH----HHHccCCCHHHHHHHHHHHHHh
Q 007520 349 LPKILQLLTS----EDPDVQIHAVKVVANLAA----EDINQEKIVEEGGLDALL----LLLRTSQNTTILRVASGAIANL 416 (600)
Q Consensus 349 V~~Lv~LL~s----~~~~vr~~Aa~aL~nLa~----~~~~~~~iv~~G~I~~Lv----~lL~~~~~~~v~~~Al~aL~NL 416 (600)
+..+..++.+ .++.++..|.-++++|.. +...+ ....++++. ..+. ..+..-...++.+|.|+
T Consensus 393 l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c----~~~~v~~i~~~l~~~~~-~~~~~~~~~~LkaLGN~ 467 (1056)
T 1lsh_A 393 LSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSC----PDELLQPLHDLLSQSSD-RAKEEEIVLALKALGNA 467 (1056)
T ss_dssp HHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSC----CGGGTHHHHHHHHHHHH-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCC----CHHHHHHHHHHHHHHHh-cCChHHHHHHHHHhhcc
Confidence 4444555543 467777777777776653 21111 111234444 3444 34566677899999999
Q ss_pred hcCCccHHHHHHhCchhhhHhhhcc------CCCHHHHHHHHHHHHHHhCC-chhHHHHHHcChHHHHHHHH--cCCCHH
Q 007520 417 AMNEMNQGLIMSRGGGQLLAKTASK------TDDPQTLRMVAGALANLCGN-EKLHTMLEEDGAIKALLAMV--RSGNID 487 (600)
Q Consensus 417 a~~~~~r~~I~~~G~I~~Lv~lL~~------~~~~~v~~~Aa~aL~nLa~~-~e~r~~i~~~G~i~~Lv~lL--~s~~~~ 487 (600)
... ..++.|..++.. +....++..|+++|++++.. +.. +-+.++.+. ...++.
T Consensus 468 g~p----------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~--------v~~il~~i~~n~~e~~E 529 (1056)
T 1lsh_A 468 GQP----------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRK--------VQEIVLPIFLNVAIKSE 529 (1056)
T ss_dssp TCG----------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHH--------HHHHHHHHHHCTTSCHH
T ss_pred CCh----------hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchHH--------HHHHHHHHhcCCCCChH
Confidence 763 245666666531 22346888899999998743 211 334577777 468889
Q ss_pred HHHHHHHHHHHhhcCCchhhhhcchhhHHHHHhCCcHHHHHHhhcC-CCHHHHHHHHHHHHHhhcCc
Q 007520 488 VIAQVARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSKT-NSASTRRHVELALCHLAQNE 553 (600)
Q Consensus 488 v~~~A~~aL~nLa~~~~~~~~q~~~~~r~~l~e~g~l~~Lv~Ll~s-~~~~v~~~Aa~aL~nLa~~~ 553 (600)
+|..|+..|.. ++|. ...+..|...+.. .+..|.......|.+++.+.
T Consensus 530 vRiaA~~~Lm~---t~P~---------------~~~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s~ 578 (1056)
T 1lsh_A 530 LRIRSCIVFFE---SKPS---------------VALVSMVAVRLRREPNLQVASFVYSQMRSLSRSS 578 (1056)
T ss_dssp HHHHHHHHHHH---TCCC---------------HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHH---HCcC---------------HHHHHHHHHHHhhCchHHHHHHHHHHHHHHHhcC
Confidence 99888887754 2222 1355666666555 67888888888888887644
No 190
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=71.84 E-value=13 Score=31.93 Aligned_cols=53 Identities=23% Similarity=0.266 Sum_probs=43.1
Q ss_pred hHHHHHHHHHHhHHHHHHHHhh---hccHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 007520 19 CRKLETQVDHLTAEIERKQKLR---ENDKCELEKLLRECQISYDEAKDNLVTQVEL 71 (600)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (600)
.-.|+.++++|..+++..++.. |-.-|++||.-+-+-.|+...+++|..-||+
T Consensus 37 ~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD~E~k~n~aiEr 92 (111)
T 2v66_B 37 VSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLEDFEQRLNQAIER 92 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 3458888999998888887765 5555999999999999999999999855554
No 191
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=71.06 E-value=12 Score=36.89 Aligned_cols=101 Identities=17% Similarity=0.207 Sum_probs=66.7
Q ss_pred CCCHHHHHHHHHHHHHHhCCch-hHHHHHHcChHHHHHHHHc--------CCCHHHHHHHHHHHHHhhcCCchhhhhcch
Q 007520 442 TDDPQTLRMVAGALANLCGNEK-LHTMLEEDGAIKALLAMVR--------SGNIDVIAQVARGLANFAKCESRAIVQGQR 512 (600)
Q Consensus 442 ~~~~~v~~~Aa~aL~nLa~~~e-~r~~i~~~G~i~~Lv~lL~--------s~~~~v~~~A~~aL~nLa~~~~~~~~q~~~ 512 (600)
+.++..+..++++++|+-.++. ++..+........++..+. +.+..++..++.++.|++...-.
T Consensus 101 ~~~~~~~ml~lR~l~NlF~~~~~g~~l~~~~~~~~~i~~~i~~~~~~~~~~~~~nl~iA~ATl~~N~av~~~~------- 173 (253)
T 3gae_A 101 NKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTK------- 173 (253)
T ss_dssp CSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHHT-------
T ss_pred CCchhHHHHHHHHHHHcccCCchHHHHHhcchhHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHhh-------
Confidence 3467788899999999998888 6776655444455555542 13567888999999999864100
Q ss_pred hhHHHHHhCCcHHHHHHhhcC---------CCHHHHHHHHHHHHHhhcCc
Q 007520 513 KGRSHLMEDSALEWLIANSKT---------NSASTRRHVELALCHLAQNE 553 (600)
Q Consensus 513 ~~r~~l~e~g~l~~Lv~Ll~s---------~~~~v~~~Aa~aL~nLa~~~ 553 (600)
.+. +......++..+.. .+++...++..||.+|...+
T Consensus 174 -~~~---~~e~~~~l~~~i~~~~~~~e~~~~d~Ea~yR~LvAlGtL~~~~ 219 (253)
T 3gae_A 174 -GNS---DLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVE 219 (253)
T ss_dssp -SCS---CTTHHHHHHHHHHTTTTTSHHHHHSHHHHHHHHHHHHHHHHHS
T ss_pred -ccc---hHHHHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHhCc
Confidence 000 12233445554431 37889999999999997533
No 192
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=70.53 E-value=20 Score=29.72 Aligned_cols=44 Identities=11% Similarity=0.056 Sum_probs=31.6
Q ss_pred chhHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHhhhHHHHHHH
Q 007520 85 NDKYEFEKQLRESQISYDESMRNLVTRSEFLEKENAHLELEVEK 128 (600)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~e~~~~~~~~~~ 128 (600)
+-+..||+.++.....|...+.++...+..|+.+..++..+|.+
T Consensus 19 ~~~~~LE~~l~e~E~~~~~e~~~~q~~i~~lE~eL~~~r~e~~~ 62 (95)
T 3mov_A 19 KESRACLERIQELEDLLAKEKDNSRRMLTDKEREMAEIRDQMQQ 62 (95)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34578888888888888888888888776666666665555555
No 193
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=69.86 E-value=42 Score=27.02 Aligned_cols=41 Identities=20% Similarity=0.272 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHhhhHHHHHHH
Q 007520 88 YEFEKQLRESQISYDESMRNLVTRSEFLEKENAHLELEVEK 128 (600)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~e~~~~~~~~~~ 128 (600)
.+||+.++.....|...+.++..++..++.+..++..+|.+
T Consensus 11 ~sLE~~l~e~e~~~~~~~~~~q~~i~~lE~eL~~~r~e~~~ 51 (84)
T 1gk4_A 11 ESLERQMREMEENFAVEAANYQDTIGRLQDEIQNMKEEMAR 51 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67888888888888888888888886666666666666655
No 194
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=69.75 E-value=38 Score=30.08 Aligned_cols=32 Identities=19% Similarity=0.162 Sum_probs=17.7
Q ss_pred hhHHHHHHHHHhHHHHHHHhhhHHHHHHHHHh
Q 007520 100 SYDESMRNLVTRSEFLEKENAHLELEVEKILG 131 (600)
Q Consensus 100 ~~~~~~~~l~~~~~~~~~e~~~~~~~~~~~~~ 131 (600)
+|-..+.++..+++.+.+++..|..++..|..
T Consensus 93 ~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~ 124 (138)
T 3hnw_A 93 DLKHELIAAQIKAESSAKEIKELKSEINKYQK 124 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555556666666655555555555433
No 195
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=69.65 E-value=41 Score=35.78 Aligned_cols=52 Identities=17% Similarity=-0.042 Sum_probs=25.5
Q ss_pred HHHHhhhchhHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHhhhHHHHHHHHHhhh
Q 007520 78 MQQKLRENDKYEFEKQLRESQISYDESMRNLVTRSEFLEKENAHLELEVEKILGEL 133 (600)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~e~~~~~~~~~~~~~~~ 133 (600)
..++..++-..++|.|+.+ ....++...++.+.+++||.+++-++.++.+.+
T Consensus 414 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (487)
T 3oja_A 414 AIVKRYEEMYVEQQSVQNN----AIRDWDMYQHKETQLAEENARLKKLNGEADLAL 465 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhc----chhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhh
Confidence 4444443333444554443 222223334444555667777777776655553
No 196
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=69.05 E-value=47 Score=38.26 Aligned_cols=127 Identities=13% Similarity=0.048 Sum_probs=83.6
Q ss_pred CCCHHHHHHHHHHHHHhhcCCccHHHHHHhCchhhhHhhhccCCCHHHHHHHHHHHHHHhC------CchhHHHHHHcCh
Q 007520 400 SQNTTILRVASGAIANLAMNEMNQGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLCG------NEKLHTMLEEDGA 473 (600)
Q Consensus 400 ~~~~~v~~~Al~aL~NLa~~~~~r~~I~~~G~I~~Lv~lL~~~~~~~v~~~Aa~aL~nLa~------~~e~r~~i~~~G~ 473 (600)
++++..+..|-..|.++-.+| +++..+..+|..+.++.++..|+.+|.|... .++.+..+. ...
T Consensus 36 ~~~~~~r~~A~~~L~~~~~~p---------~~~~~~~~lL~~~~~~~vr~~aa~~L~~~i~~~w~~l~~~~~~~ir-~~l 105 (963)
T 2x19_B 36 DPNIENKNLAQKWLMQAQVSP---------QAWHFSWQLLQPDKVPEIQYFGASALHIKISRYWSDIPTDQYESLK-AQL 105 (963)
T ss_dssp CCCHHHHHHHHHHHHHHHHST---------THHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHCGGGSCGGGHHHHH-HHH
T ss_pred CCCHHHHHHHHHHHHHHhcCH---------HHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhCHHhCCHHHHHHHH-HHH
Confidence 567778888888888876654 4777777777666778899999999999862 223333332 233
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhhcCC-chhhhhcchhhHHHHHhCCcHHHHHHhhcC-----CCHHHHHHHHHHHH
Q 007520 474 IKALLAMVRSGNIDVIAQVARGLANFAKCE-SRAIVQGQRKGRSHLMEDSALEWLIANSKT-----NSASTRRHVELALC 547 (600)
Q Consensus 474 i~~Lv~lL~s~~~~v~~~A~~aL~nLa~~~-~~~~~q~~~~~r~~l~e~g~l~~Lv~Ll~s-----~~~~v~~~Aa~aL~ 547 (600)
+..+... ....+.++...+.+|+.++..+ |.. + .+.++.|+..+.+ +++.....+..+|.
T Consensus 106 l~~l~~~-~~~~~~ir~kl~~~la~i~~~~~p~~------------W-p~~l~~l~~~~~~~~~~~~~~~~~~~~l~iL~ 171 (963)
T 2x19_B 106 FTQITRF-ASGSKIVLTRLCVALASLALSMMPDA------------W-PCAVADMVRLFQAEDSPVDGQGRCLALLELLT 171 (963)
T ss_dssp HHHHHHT-TTSCHHHHHHHHHHHHHHHHHHTTTT------------S-TTHHHHHHHHHCC------CHHHHHHHHHHHH
T ss_pred HHHHHHH-cCCCHHHHHHHHHHHHHHHHHhCccc------------c-chHHHHHHHHHhhhccCCCcHHHHHHHHHHHH
Confidence 3333331 1246889999999999998652 110 1 2567778877765 25556677777777
Q ss_pred Hhh
Q 007520 548 HLA 550 (600)
Q Consensus 548 nLa 550 (600)
.++
T Consensus 172 ~l~ 174 (963)
T 2x19_B 172 VLP 174 (963)
T ss_dssp HHH
T ss_pred hCH
Confidence 665
No 197
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=68.82 E-value=55 Score=27.98 Aligned_cols=89 Identities=18% Similarity=0.294 Sum_probs=40.1
Q ss_pred HHHHHHHHHHhHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHh
Q 007520 20 RKLETQVDHLTAEIERKQKLRENDKCELEKLLRECQISYDEAKDNLVTQVELLTAKIEMQQKLRENDKYEFEKQLRESQI 99 (600)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (600)
.+|..++-.|..+.++....+. +++.. ..+..-..+.+|..|+.+++. =|..|...|.
T Consensus 9 ~~lq~~~~ql~~qL~k~~~~r~----~Le~~-------w~~k~E~~k~qV~~L~~~~q~-----------sE~~L~~Lqq 66 (112)
T 1x79_B 9 KKLQLMLRQANDQLEKTMKDKQ----ELEDF-------IKQSSEDSSHQISALVLRAQA-----------SEILLEELQQ 66 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH----HHHHH-------HHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHH-------HHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHH
Confidence 3555555555556665555553 33322 333444444566666555532 2334444444
Q ss_pred hhHHHHHHHHHhHHHHHHHhhhHHHHHHHHH
Q 007520 100 SYDESMRNLVTRSEFLEKENAHLELEVEKIL 130 (600)
Q Consensus 100 ~~~~~~~~l~~~~~~~~~e~~~~~~~~~~~~ 130 (600)
.|-........++-.|.....+++.++.+|.
T Consensus 67 ~fsq~q~~vq~qL~~Lt~~Re~V~~eL~rLQ 97 (112)
T 1x79_B 67 GLSQAKRDVQEQMAVLMQSREQVSEELVRLQ 97 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444444443
No 198
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=68.71 E-value=11 Score=33.37 Aligned_cols=18 Identities=28% Similarity=0.087 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 007520 66 VTQVELLTAKIEMQQKLR 83 (600)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~ 83 (600)
..|||.|+++|=+|+..-
T Consensus 73 e~ElE~LTasLFeEAN~M 90 (135)
T 2e7s_A 73 NKEVEDLTASLFDEANNL 90 (135)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 449999999999888654
No 199
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=66.70 E-value=12 Score=27.04 Aligned_cols=35 Identities=23% Similarity=0.223 Sum_probs=30.7
Q ss_pred hhHHHHHHHHHhHHHHHHHhhhHHHHHHHHHhhhh
Q 007520 100 SYDESMRNLVTRSEFLEKENAHLELEVEKILGELN 134 (600)
Q Consensus 100 ~~~~~~~~l~~~~~~~~~e~~~~~~~~~~~~~~~~ 134 (600)
.|.+++.+|++++..|+.-...++.|+.||.+-|-
T Consensus 8 kLKe~n~~L~~kv~~Le~~c~~~eQEieRL~~LLk 42 (48)
T 3vmx_A 8 RLKQINIQLATKIQHLEFSCSEKEQEIERLNKLLK 42 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHH
Confidence 46688889999999999999999999999887653
No 200
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=66.63 E-value=12 Score=30.68 Aligned_cols=34 Identities=24% Similarity=0.218 Sum_probs=26.9
Q ss_pred HHHHHHHhHHHHHHHhhhHHHHHHHHHhhhhhhh
Q 007520 104 SMRNLVTRSEFLEKENAHLELEVEKILGELNHQK 137 (600)
Q Consensus 104 ~~~~l~~~~~~~~~e~~~~~~~~~~~~~~~~~~~ 137 (600)
.-..+..++++|++||..|..++..|..++..-+
T Consensus 37 r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr 70 (87)
T 1hjb_A 37 RNLETQHKVLELTAENERLQKKVEQLSRELSTLR 70 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3346778899999999999999998888765444
No 201
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=66.53 E-value=19 Score=28.16 Aligned_cols=17 Identities=18% Similarity=0.304 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHhhhHH
Q 007520 50 LLRECQISYDEAKDNLV 66 (600)
Q Consensus 50 ~~~~~~~~~~~~~~~~~ 66 (600)
+++.||..|-+.+..|.
T Consensus 15 qNR~AQRafReRK~~~i 31 (70)
T 1gd2_E 15 QNRAAQRAFRKRKEDHL 31 (70)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 56788999988888665
No 202
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=65.92 E-value=45 Score=29.46 Aligned_cols=33 Identities=18% Similarity=0.168 Sum_probs=11.2
Q ss_pred hhhhHHHHHHHHHHhHhHHHhhhhhHHHHHHHH
Q 007520 175 TQLYEKKIAELNKKLEDEHACFEGAVEQLDMVK 207 (600)
Q Consensus 175 ~~~~~~~~~~l~~~l~~e~~~~~~~~~~~~~~~ 207 (600)
...++.+...|...|.+-..+....++++..||
T Consensus 98 ~~~~e~r~~~L~~ql~e~e~ll~~lq~QL~~LK 130 (135)
T 2e7s_A 98 KYAIEILNKRLTEQLREKDMLLDTLTLQLKNLK 130 (135)
T ss_dssp HHHHHHHHHHHHHTTTHHHHCC-----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555554454444444444433
No 203
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=65.66 E-value=13 Score=29.83 Aligned_cols=33 Identities=24% Similarity=0.193 Sum_probs=26.5
Q ss_pred HHHHHHHHhHHHHHHHhhhHHHHHHHHHhhhhh
Q 007520 103 ESMRNLVTRSEFLEKENAHLELEVEKILGELNH 135 (600)
Q Consensus 103 ~~~~~l~~~~~~~~~e~~~~~~~~~~~~~~~~~ 135 (600)
.-...+..++++|++||..|..++..|..++..
T Consensus 36 ~r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~ 68 (78)
T 1gu4_A 36 MRNLETQHKVLELTAENERLQKKVEQLSRELST 68 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344577888999999999999999988877644
No 204
>3pst_A Protein DOA1; protein degradation, CDC48, ubiquitin, nuclear protein; 2.00A {Saccharomyces cerevisiae} PDB: 3psp_A
Probab=65.09 E-value=81 Score=33.30 Aligned_cols=102 Identities=15% Similarity=0.195 Sum_probs=66.5
Q ss_pred CCCHHHHHHHHHHHHHHhCCchh-HHHHHHcChHHHHHHHHc--------CCCHHHHHHHHHHHHHhhcCCchhhhhcch
Q 007520 442 TDDPQTLRMVAGALANLCGNEKL-HTMLEEDGAIKALLAMVR--------SGNIDVIAQVARGLANFAKCESRAIVQGQR 512 (600)
Q Consensus 442 ~~~~~v~~~Aa~aL~nLa~~~e~-r~~i~~~G~i~~Lv~lL~--------s~~~~v~~~A~~aL~nLa~~~~~~~~q~~~ 512 (600)
...+..+..++++++||-.++.. +..+........++..+. ..+..++..++.++.|++...-.
T Consensus 273 ~~~~an~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~~l~~~~~~~nkNl~IA~ATLllNlAv~~~~------- 345 (425)
T 3pst_A 273 NKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTK------- 345 (425)
T ss_dssp CSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHHHHHHHSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHH-------
T ss_pred CCChhHHHHHHHHHHHhcCCcchHHHHhhCchhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhc-------
Confidence 35677888999999999988874 444433333456666552 12457888999999999864200
Q ss_pred hhHHHHHhCCcHHHHHHhhc---------CCCHHHHHHHHHHHHHhhcCch
Q 007520 513 KGRSHLMEDSALEWLIANSK---------TNSASTRRHVELALCHLAQNED 554 (600)
Q Consensus 513 ~~r~~l~e~g~l~~Lv~Ll~---------s~~~~v~~~Aa~aL~nLa~~~~ 554 (600)
.+ .+...+..++..+. ..+++...+++.||.+|....+
T Consensus 346 -~~---~~~el~~~l~e~l~~~~g~~E~~~~d~EA~yRlLVALGtLv~~~~ 392 (425)
T 3pst_A 346 -GN---SDLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVEP 392 (425)
T ss_dssp -SC---SCTTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHHCH
T ss_pred -cc---chHHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhcCH
Confidence 00 01223445555544 2588999999999999986433
No 205
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=64.45 E-value=22 Score=28.92 Aligned_cols=45 Identities=31% Similarity=0.276 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHhhhHHH
Q 007520 225 ELCVKLKETRQLHESAVYEVQTLKSEYKNLLEEKETMSDELQAARQRLLVEE 276 (600)
Q Consensus 225 ~l~~~~~d~~~~~e~~~~el~~l~~~~~~l~~~~~~~~~el~~~~~~l~~e~ 276 (600)
.++..+.++++..+.+-.|-+ .|...+-.+.-||..|++.|..|.
T Consensus 39 ~lE~el~~~r~e~~~ql~EYq-------~LlnvK~~Le~EIatYRkLLEGEe 83 (86)
T 1x8y_A 39 EKEREMAEMRARMQQQLDEYQ-------ELLDIKLALDMEIHAYRKLLEGEE 83 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHhhHHHHHHHHHHHcCCc
Confidence 344555555555554433322 233334456788999988887664
No 206
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=64.15 E-value=52 Score=26.42 Aligned_cols=18 Identities=28% Similarity=0.220 Sum_probs=12.2
Q ss_pred hhchHHHHHHHHhhhHHH
Q 007520 259 ETMSDELQAARQRLLVEE 276 (600)
Q Consensus 259 ~~~~~el~~~~~~l~~e~ 276 (600)
-.+.-||..|++.|..|.
T Consensus 64 ~~Ld~EIatYRkLLEGEe 81 (84)
T 1gk4_A 64 MALDIEIATYRKLLEGEE 81 (84)
T ss_dssp HHHHHHHHHHHHHHTC--
T ss_pred HhhHHHHHHHHHHHcCCc
Confidence 355788889988886654
No 207
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=63.76 E-value=42 Score=27.15 Aligned_cols=41 Identities=17% Similarity=0.088 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHhhhHHHHHHH
Q 007520 88 YEFEKQLRESQISYDESMRNLVTRSEFLEKENAHLELEVEK 128 (600)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~e~~~~~~~~~~ 128 (600)
.+||+.++.....|.-.+.++...+..++.+..++..+|.+
T Consensus 13 ~~Le~~l~e~E~~~~~~l~~~q~~i~~lE~el~~~r~e~~~ 53 (86)
T 1x8y_A 13 AAKEAKLRDLEDSLARERDTSRRLLAEKEREMAEMRARMQQ 53 (86)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777788777777777777777776666666666555555
No 208
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=63.61 E-value=63 Score=26.82 Aligned_cols=75 Identities=16% Similarity=0.183 Sum_probs=49.0
Q ss_pred hHHHHHHHHHhHHHHHHHhhhHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHhhhhhhhhhhhhhHHhhhhhhhhhhhHH
Q 007520 101 YDESMRNLVTRSEFLEKENAHLELEVEKILGELNHQKDQNNLKREKIVQLEISLKNSKQYEMENSTYQKALADTTQLYEK 180 (600)
Q Consensus 101 ~~~~~~~l~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~ 180 (600)
+.+....++.+.+..+.++..++.|+..|.+.+ . .+.+....++.
T Consensus 21 a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKi--------------q---------------------~lE~eld~~~e 65 (101)
T 3u59_A 21 AIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKL--------------K---------------------GTEDEVEKYSE 65 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------H---------------------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH--------------H---------------------HHHHHHHHHHH
Confidence 445566677777777777777777777644332 1 22334455667
Q ss_pred HHHHHHHHhHhHHHhhhhhHHHHHHHHHHH
Q 007520 181 KIAELNKKLEDEHACFEGAVEQLDMVKKLL 210 (600)
Q Consensus 181 ~~~~l~~~l~~e~~~~~~~~~~~~~~~~~~ 210 (600)
.+.+.+..|+........|+.++-.|+|=|
T Consensus 66 ~l~~a~~kLe~~ek~~~~AE~evasLnRri 95 (101)
T 3u59_A 66 SVKEAQEKLEQAEKKATDAEAEVASLNRRI 95 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777777888888866644
No 209
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=63.60 E-value=42 Score=26.76 Aligned_cols=22 Identities=32% Similarity=0.424 Sum_probs=16.7
Q ss_pred hhhhhhHHHHHHHHHHhHhHHH
Q 007520 173 DTTQLYEKKIAELNKKLEDEHA 194 (600)
Q Consensus 173 ~~~~~~~~~~~~l~~~l~~e~~ 194 (600)
..+..++.+|++|+++|-+-.+
T Consensus 52 ~~V~~lq~Ki~elkrqlAd~va 73 (78)
T 2ic6_A 52 AAVSALETKLGELKRELADLIA 73 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3778888888888888876543
No 210
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=63.08 E-value=15 Score=27.23 Aligned_cols=31 Identities=23% Similarity=0.287 Sum_probs=25.4
Q ss_pred HHHHHHHhHHHHHHHhhhHHHHHHHHHhhhh
Q 007520 104 SMRNLVTRSEFLEKENAHLELEVEKILGELN 134 (600)
Q Consensus 104 ~~~~l~~~~~~~~~e~~~~~~~~~~~~~~~~ 134 (600)
-+..|+.++..|+.||..|..++..|...+.
T Consensus 23 ~~~~LE~~v~~L~~eN~~L~~~~~~L~~~~~ 53 (55)
T 1dh3_A 23 YVKSLENRVAVLENQNKTLIEELKALKDLYS 53 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTST
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3457788889999999999999999876653
No 211
>3k29_A Putative uncharacterized protein; YSCO, type III secretion apparatus, S genomics, csgid; HET: MSE; 2.00A {Chlamydia trachomatis}
Probab=61.62 E-value=96 Score=28.27 Aligned_cols=84 Identities=18% Similarity=0.175 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHhhhHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHhhhhhhhhhhhhhHH
Q 007520 88 YEFEKQLRESQISYDESMRNLVTRSEFLEKENAHLELEVEKILGELNHQKDQNNLKREKIVQLEISLKNSKQYEMENSTY 167 (600)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~ 167 (600)
..+|.++.+.-++|+.-+.+|...+ .+ +--++++.+ =-.|
T Consensus 40 ~~~e~~r~k~~~h~~~k~~qlre~~--------------d~------------gtt~~~i~~--------------m~~y 79 (169)
T 3k29_A 40 RERESERDKVKNHYMQKIRQLREQL--------------DD------------GTTSDAILK--------------MKAY 79 (169)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH--------------HH------------CCCHHHHHH--------------HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--------------hc------------CCCcHHHHH--------------HHHH
Confidence 5677888888888887776666555 22 222233332 1247
Q ss_pred hhhhhhhhhhhHHHHHHHHHHhHhHHHhhhhhHHHHHHHHHHHh
Q 007520 168 QKALADTTQLYEKKIAELNKKLEDEHACFEGAVEQLDMVKKLLS 211 (600)
Q Consensus 168 ~~~l~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~~~~~~~~~ 211 (600)
.+.|..--...+.++++....++.+......+..++....+...
T Consensus 80 I~llrErea~lEqkVaeq~e~Ve~e~q~Le~ar~el~qArke~e 123 (169)
T 3k29_A 80 IKVVAIQLSEEEEKVNKQKENVLAASKELERAEVELTKRRKEEE 123 (169)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777778888888888888777776666666666444333
No 212
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=61.19 E-value=71 Score=26.60 Aligned_cols=75 Identities=9% Similarity=0.076 Sum_probs=47.5
Q ss_pred hHHHHHHHHHhHHHHHHHhhhHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHhhhhhhhhhhhhhHHhhhhhhhhhhhHH
Q 007520 101 YDESMRNLVTRSEFLEKENAHLELEVEKILGELNHQKDQNNLKREKIVQLEISLKNSKQYEMENSTYQKALADTTQLYEK 180 (600)
Q Consensus 101 ~~~~~~~l~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~ 180 (600)
+.+....++.+++..+.++..++.|+..|.+. +.++| +....++.
T Consensus 21 a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk--------------~~~lE---------------------~eld~~ee 65 (101)
T 3u1c_A 21 ALDRAEQAEADKKAAEERSKQLEDDIVQLEKQ--------------LRVTE---------------------DSRDQVLE 65 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHH---------------------HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH--------------HHHHH---------------------HHHHHHHH
Confidence 45566677777777777777777777774333 22222 24444566
Q ss_pred HHHHHHHHhHhHHHhhhhhHHHHHHHHHHH
Q 007520 181 KIAELNKKLEDEHACFEGAVEQLDMVKKLL 210 (600)
Q Consensus 181 ~~~~l~~~l~~e~~~~~~~~~~~~~~~~~~ 210 (600)
.+.+.+..|+........|+.++..|+|=|
T Consensus 66 ~L~ea~~kLee~ek~~~~aE~ev~~L~Rri 95 (101)
T 3u1c_A 66 ELHKSEDSLLFAEENAAKAESEVASLNRRI 95 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666777777777666777777777765544
No 213
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=60.52 E-value=1.5e+02 Score=32.64 Aligned_cols=38 Identities=24% Similarity=0.420 Sum_probs=26.1
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHhHHHHHHHhhhHHHHHHHH
Q 007520 89 EFEKQLRESQISYDESMRNLVTRSEFLEKENAHLELEVEKI 129 (600)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~e~~~~~~~~~~~ 129 (600)
.+|.-+-.++.+|.|.+++|.++. +.|..++..|.+++
T Consensus 512 ~~~~~~~~~~~~~~e~~~ql~~km---e~~~~~~~~e~~~~ 549 (592)
T 1f5n_A 512 KNEQMMEQKERSYQEHLKQLTEKM---ENDRVQLLKEQERT 549 (592)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 344445556778899999988865 66666666666663
No 214
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=59.98 E-value=54 Score=26.27 Aligned_cols=54 Identities=15% Similarity=0.231 Sum_probs=35.1
Q ss_pred HHHHHHHHhhhchhHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHhhhHHHHHHHHHhhhhh
Q 007520 74 AKIEMQQKLRENDKYEFEKQLRESQISYDESMRNLVTRSEFLEKENAHLELEVEKILGELNH 135 (600)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~e~~~~~~~~~~~~~~~~~ 135 (600)
-.|+.+|.-. ..+..||.+++ ...++.+.++..-++.|..|..||+.+++.+..
T Consensus 17 SALeaEIqAK----Q~i~EELs~vr----~~ni~~eskL~eae~rn~eL~~e~~~l~~~~ee 70 (81)
T 1wt6_A 17 EALEEEVLTR----QSLSREMEAIR----TDNQNFASQLREAEARNRDLEAHVRQLQERMEL 70 (81)
T ss_dssp HHHHHHHHHH----HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH----HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555444 55556665544 344566667777788888888888888877654
No 215
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=58.58 E-value=71 Score=26.78 Aligned_cols=22 Identities=32% Similarity=0.430 Sum_probs=17.0
Q ss_pred hhhhhhHHHHHHHHHHhHhHHH
Q 007520 173 DTTQLYEKKIAELNKKLEDEHA 194 (600)
Q Consensus 173 ~~~~~~~~~~~~l~~~l~~e~~ 194 (600)
..+..++.+|++|+++|-+-.+
T Consensus 82 ~~Vsalq~KiaeLKrqLAd~va 103 (107)
T 2k48_A 82 AAVSTLETKLGELKRQLADLVA 103 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4778888889998888876543
No 216
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=57.02 E-value=55 Score=33.08 Aligned_cols=135 Identities=11% Similarity=0.020 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHHHhhCCcchHHHHHHcCCHHHHHHHH-ccCCCHHHHHHHHHHHHHhhcC-CccHHHHHH--hCchhhhH
Q 007520 361 PDVQIHAVKVVANLAAEDINQEKIVEEGGLDALLLLL-RTSQNTTILRVASGAIANLAMN-EMNQGLIMS--RGGGQLLA 436 (600)
Q Consensus 361 ~~vr~~Aa~aL~nLa~~~~~~~~iv~~G~I~~Lv~lL-~~~~~~~v~~~Al~aL~NLa~~-~~~r~~I~~--~G~I~~Lv 436 (600)
.+....|.-.|.-++.+-....+|++.. ...|-.++ ....++.+++.|++++....+| |+.-..|.. ...+..+.
T Consensus 42 ~~~le~aLD~L~ElSHDi~~G~KI~~~e-f~lL~nL~~~~~~~~~~rE~aarII~ssLRNNP~Al~~V~~~~p~fv~~lf 120 (315)
T 3qml_C 42 IARLEDSFDRIMEFAHDYKHGYKIITHE-FALLANLSLNENLPLTLRELSTRVITSCLRNNPPVVEFINESFPNFKSKIM 120 (315)
T ss_dssp HHHHHHHHHHHGGGTTSHHHHHHHHHHH-HHHHHHHHHCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHCTTHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHhhhHHHhCc-HHHHHHHHhhccCChhHHHHHHHHHHHHHccCHHHHHHHHHhChhHHHHHH
Confidence 3345666667777777766777777632 33333333 2245677889999999888887 666666655 23333333
Q ss_pred hhhcc------CCCHHHHHHHHHHHHHHhCCchhHHHHHHcChHHHHHHHHcCC--CHHHHHHHHHHHHHhh
Q 007520 437 KTASK------TDDPQTLRMVAGALANLCGNEKLHTMLEEDGAIKALLAMVRSG--NIDVIAQVARGLANFA 500 (600)
Q Consensus 437 ~lL~~------~~~~~v~~~Aa~aL~nLa~~~e~r~~i~~~G~i~~Lv~lL~s~--~~~v~~~A~~aL~nLa 500 (600)
.-|.. .....++..-+++|--|..++. .+. ..++..|..++... ++.++..|+..+..+=
T Consensus 121 ~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~---~F~-~~~m~~L~~ly~~~~~d~~~k~Kvl~li~d~f 188 (315)
T 3qml_C 121 AALSNLNDSNHRSSNILIKRYLSILNELPVTSE---DLP-IYSTVVLQNVYERNNKDKQLQIKVLELISKIL 188 (315)
T ss_dssp HHHHHHHCC--CCCHHHHHHHHHHHHHSCCCST---TC---CCHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcccchhHHHHHHHHHHHHHHhcChH---hhh-hccHHHHHHHHccCCCCHHHHHHHHHHHHHHc
Confidence 22221 0222566777788888887752 121 34667777777655 8999998888888774
No 217
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=56.43 E-value=14 Score=31.02 Aligned_cols=33 Identities=30% Similarity=0.314 Sum_probs=29.7
Q ss_pred HHHHHHHHhHHHHHHHhhhHHHHHHHHHhhhhh
Q 007520 103 ESMRNLVTRSEFLEKENAHLELEVEKILGELNH 135 (600)
Q Consensus 103 ~~~~~l~~~~~~~~~e~~~~~~~~~~~~~~~~~ 135 (600)
|.+..|..+++-|++||.+|+.+++.|...|.+
T Consensus 12 e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~ 44 (100)
T 1go4_E 12 EEADTLRLKVEELEGERSRLEEEKRMLEAQLER 44 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577799999999999999999999999998877
No 218
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=55.51 E-value=52 Score=27.35 Aligned_cols=57 Identities=12% Similarity=0.116 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHhhhHHHHhh
Q 007520 223 VHELCVKLKETRQLHESAVYEVQTLKSEYKNLLEEKETMSDELQAARQRLLVEEKQR 279 (600)
Q Consensus 223 ~~~l~~~~~d~~~~~e~~~~el~~l~~~~~~l~~~~~~~~~el~~~~~~l~~e~~~~ 279 (600)
+.++++.+.+...++..+..++..-...-....+....+..||..+--.|.++++.+
T Consensus 14 l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~M 70 (97)
T 2eqb_B 14 YNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNM 70 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444443333222222222334455555666666666666666554
No 219
>2efk_A CDC42-interacting protein 4; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.30A {Homo sapiens} SCOP: a.238.1.4
Probab=54.41 E-value=1.6e+02 Score=28.62 Aligned_cols=52 Identities=10% Similarity=0.190 Sum_probs=25.1
Q ss_pred HHHHHhHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHhhhHH---HHHHHHHHHH
Q 007520 25 QVDHLTAEIERKQKLRENDKCELEKLLRECQISYDEAKDNLV---TQVELLTAKI 76 (600)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 76 (600)
.|..+..+.++..|..+..-..+.+.+.++-..+..++++|. .+++.++.++
T Consensus 99 ~l~~~~~~~~~~rK~~~~~~~k~~k~~~~~~~~l~KaKk~Y~~~~~e~e~a~~~~ 153 (301)
T 2efk_A 99 ELTKYSQEMKQERKMHFQEGRRAQQQLENGFKQLENSKRKFERDCREAEKAAQTA 153 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455666666666663333344444444444444555552 2444444443
No 220
>3l3f_X Protein DOA1, DOA1/UFD3; armadillo-like repeat structure, nucleus, UBL conjugation PA protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=54.38 E-value=30 Score=35.84 Aligned_cols=100 Identities=14% Similarity=0.161 Sum_probs=64.6
Q ss_pred CCCHHHHHHHHHHHHHHhCCchhHHHHHHc-ChHHHHHHHHc--------CCCHHHHHHHHHHHHHhhcCCchhhhhcch
Q 007520 442 TDDPQTLRMVAGALANLCGNEKLHTMLEED-GAIKALLAMVR--------SGNIDVIAQVARGLANFAKCESRAIVQGQR 512 (600)
Q Consensus 442 ~~~~~v~~~Aa~aL~nLa~~~e~r~~i~~~-G~i~~Lv~lL~--------s~~~~v~~~A~~aL~nLa~~~~~~~~q~~~ 512 (600)
...+..+..++++++||-.++.....+... .....++..+. ..+..++..++..+.|++...-.
T Consensus 210 ~~~~~n~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~~~~~~~~~~nkNl~IA~ATL~lNlAv~~~~------- 282 (362)
T 3l3f_X 210 NKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTK------- 282 (362)
T ss_dssp CSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSCCSSCCHHHHHHHHHHHHHHHHHHHHHHHH-------
T ss_pred CCChhHHHHHHHHHHHhccCcchHHHHHhcchhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhc-------
Confidence 346788889999999999888744444432 22344555441 22567888999999999864200
Q ss_pred hhHHHHHhCCcHHHHHHhhc---------CCCHHHHHHHHHHHHHhhcC
Q 007520 513 KGRSHLMEDSALEWLIANSK---------TNSASTRRHVELALCHLAQN 552 (600)
Q Consensus 513 ~~r~~l~e~g~l~~Lv~Ll~---------s~~~~v~~~Aa~aL~nLa~~ 552 (600)
.+ .+...+..++..+. ..+++...+++.||.+|...
T Consensus 283 -~~---~~~el~~~l~~~l~~~~g~~E~~~~d~EA~yRlLVALGtL~~~ 327 (362)
T 3l3f_X 283 -GN---SDLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATV 327 (362)
T ss_dssp -TC---SCTTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHH
T ss_pred -cc---chHHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhc
Confidence 00 01223445555554 25889999999999999853
No 221
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=54.37 E-value=1.1e+02 Score=26.89 Aligned_cols=24 Identities=21% Similarity=-0.011 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 007520 227 CVKLKETRQLHESAVYEVQTLKSE 250 (600)
Q Consensus 227 ~~~~~d~~~~~e~~~~el~~l~~~ 250 (600)
+..+..+.++++.+..|+-+++..
T Consensus 74 ~~~~~~L~~~l~~~~kE~~~lK~e 97 (138)
T 3hnw_A 74 KKMADSLSLDIENKDKEIYDLKHE 97 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333334433
No 222
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=52.34 E-value=81 Score=28.22 Aligned_cols=14 Identities=29% Similarity=0.373 Sum_probs=7.7
Q ss_pred hhhHHHHHHHHHHh
Q 007520 176 QLYEKKIAELNKKL 189 (600)
Q Consensus 176 ~~~~~~~~~l~~~l 189 (600)
..|+.+|..|+..|
T Consensus 132 ~~yee~I~~L~~kL 145 (147)
T 2b9c_A 132 YHLENEVARLKKLV 145 (147)
T ss_dssp HHHHHHHTTSCCCC
T ss_pred HHHHHHHHHHHHHh
Confidence 45666666655443
No 223
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=51.51 E-value=3.5e+02 Score=32.24 Aligned_cols=128 Identities=9% Similarity=0.033 Sum_probs=78.0
Q ss_pred CCHHHHHHHHHHHHHhhCCcchHHHHHHcCCHHHHHHHHc-cCCCHHHHHHHHHHHHHhhcC-----CccHHHHHHhCch
Q 007520 359 EDPDVQIHAVKVVANLAAEDINQEKIVEEGGLDALLLLLR-TSQNTTILRVASGAIANLAMN-----EMNQGLIMSRGGG 432 (600)
Q Consensus 359 ~~~~vr~~Aa~aL~nLa~~~~~~~~iv~~G~I~~Lv~lL~-~~~~~~v~~~Al~aL~NLa~~-----~~~r~~I~~~G~I 432 (600)
.+...|..|-..|..+-.+++ +...+...|. .+.+..++..|+..|.|.... +......++...+
T Consensus 25 ~~~~~r~~Ae~~L~~~~~~p~---------~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~~Ir~~ll 95 (1204)
T 3a6p_A 25 STQRYRLEALKFCEEFKEKCP---------ICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNGMSRLEKVYLKNSVM 95 (1204)
T ss_dssp CCHHHHHHHHHHHHHHHHHCT---------THHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGGGSCHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHhCch---------HHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHH
Confidence 367778888888877644332 4455555454 466888999999999998632 2223333333344
Q ss_pred hhhHhhhccC--CCHHHHHHHHHHHHHHhCC--chhHHHHHHcChHHHHHHHHcCCCHHHHHHHHHHHHHhhc
Q 007520 433 QLLAKTASKT--DDPQTLRMVAGALANLCGN--EKLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFAK 501 (600)
Q Consensus 433 ~~Lv~lL~~~--~~~~v~~~Aa~aL~nLa~~--~e~r~~i~~~G~i~~Lv~lL~s~~~~v~~~A~~aL~nLa~ 501 (600)
..+....... .++.++...+.++..++.. ++.- .+.++.|+.++.+ ++.....++.+|..|+.
T Consensus 96 ~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~~W-----p~ll~~L~~~~~~-~~~~~e~~L~iL~~L~E 162 (1204)
T 3a6p_A 96 ELIANGTLNILEEENHIKDALSRIVVEMIKREWPQHW-----PDMLIELDTLSKQ-GETQTELVMFILLRLAE 162 (1204)
T ss_dssp HHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTTTC-----TTHHHHHHHHHHT-CHHHHHHHHHHHHHHHH
T ss_pred HHHHhhccccccccHHHHHHHHHHHHHHHHHhCcccc-----hHHHHHHHHHhcC-CHHHHHHHHHHHHHHHH
Confidence 4443321111 3456777777788877632 2111 2567778888865 55667778888888864
No 224
>3l3f_X Protein DOA1, DOA1/UFD3; armadillo-like repeat structure, nucleus, UBL conjugation PA protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=51.22 E-value=1.1e+02 Score=31.71 Aligned_cols=131 Identities=11% Similarity=0.036 Sum_probs=75.0
Q ss_pred HHHHHHHHHHhhCCcchHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcCCccHHHHHHhC-chhhhHhhh---
Q 007520 364 QIHAVKVVANLAAEDINQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMNEMNQGLIMSRG-GGQLLAKTA--- 439 (600)
Q Consensus 364 r~~Aa~aL~nLa~~~~~~~~iv~~G~I~~Lv~lL~~~~~~~v~~~Al~aL~NLa~~~~~r~~I~~~G-~I~~Lv~lL--- 439 (600)
+..+.-.|+-++.++... +.+..++.......++..+-.++++++||..++.....++... ....++..+
T Consensus 180 ~FP~LDLLRl~v~~~~~~------~~l~~li~~~~~~~~~~n~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~~ 253 (362)
T 3l3f_X 180 KTPAYDIVRLIVKKLPYS------SDIKDYIEEGLGNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTE 253 (362)
T ss_dssp CHHHHHHHHHHGGGCSCG------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSC
T ss_pred cchHHHHHHHHhcCCChH------HHHHHHHHHhcCCCChhHHHHHHHHHHHhccCcchHHHHHhcchhHHHHHHHHHHH
Confidence 444555666555444322 2233333322224567778889999999999988544444321 122333322
Q ss_pred -ccC---CCHHHHHHHHHHHHHHhCCc-hhHHHHHHcChHHHHHHHHc---------CCCHHHHHHHHHHHHHhhcCC
Q 007520 440 -SKT---DDPQTLRMVAGALANLCGNE-KLHTMLEEDGAIKALLAMVR---------SGNIDVIAQVARGLANFAKCE 503 (600)
Q Consensus 440 -~~~---~~~~v~~~Aa~aL~nLa~~~-e~r~~i~~~G~i~~Lv~lL~---------s~~~~v~~~A~~aL~nLa~~~ 503 (600)
... .+..++.+++.++.|++..- ..+. +...+..++.++. ..+++....++-||++|...+
T Consensus 254 ~~~~~~~~nkNl~IA~ATL~lNlAv~~~~~~~---~~el~~~l~~~l~~~~g~~E~~~~d~EA~yRlLVALGtL~~~~ 328 (362)
T 3l3f_X 254 FSQASAKQSQNLAIAVSTLIFNYSALVTKGNS---DLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVE 328 (362)
T ss_dssp CSSCCHHHHHHHHHHHHHHHHHHHHHHHHTCS---CTTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHHC
T ss_pred hhhcccCCCchHHHHHHHHHHHHHHHHhcccc---hHHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhcC
Confidence 211 23467888888999997321 0000 0234445666654 258889999999999998543
No 225
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=50.71 E-value=64 Score=25.82 Aligned_cols=15 Identities=20% Similarity=0.384 Sum_probs=10.3
Q ss_pred HHHHHHHHHhHhHHH
Q 007520 180 KKIAELNKKLEDEHA 194 (600)
Q Consensus 180 ~~~~~l~~~l~~e~~ 194 (600)
.+++.|+.+|+.-.+
T Consensus 54 ~El~~Lq~qLe~kd~ 68 (81)
T 3qh9_A 54 AEVAQLQEQVALKDA 68 (81)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHH
Confidence 677778877775444
No 226
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=50.15 E-value=92 Score=24.93 Aligned_cols=58 Identities=16% Similarity=0.265 Sum_probs=29.8
Q ss_pred HHHHHHHhHhHHHhhhhhHHHHHHHHHHHhhhhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007520 182 IAELNKKLEDEHACFEGAVEQLDMVKKLLSDYQNSNQGQKEVHELCVKLKETRQLHESAVYEVQTLKSEYK 252 (600)
Q Consensus 182 ~~~l~~~l~~e~~~~~~~~~~~~~~~~~~~~~q~~~~~~~e~~~l~~~~~d~~~~~e~~~~el~~l~~~~~ 252 (600)
.-+|+.-|+.|..-...-.++|.. ..+....+++.+.|+...+..+..|++.++.++.
T Consensus 12 ~leLQSALeaEIqAKQ~i~EELs~-------------vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~e 69 (81)
T 1wt6_A 12 LRELQEALEEEVLTRQSLSREMEA-------------IRTDNQNFASQLREAEARNRDLEAHVRQLQERME 69 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346777777775544444444443 2223344445555555555555555444554443
No 227
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=49.52 E-value=80 Score=33.16 Aligned_cols=46 Identities=15% Similarity=0.201 Sum_probs=28.3
Q ss_pred HHHHHhhhccHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhh
Q 007520 34 ERKQKLRENDKCELEKLLRECQISYDEAKDNLVTQVELLTAKIEMQQKLR 83 (600)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (600)
=+|++..+.+-.+|+..+.+..++=++++- =|..+|..+..-++.+
T Consensus 30 ~kye~~V~~~l~~L~~~l~~isn~Ts~~~~----~v~~ik~~~~~~q~~~ 75 (411)
T 3ghg_C 30 STYQTKVDKDLQSLEDILHQVENKTSEVKQ----LIKAIQLTYNPDESSK 75 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHCTTTCCC
T ss_pred HHhccchhhHHHHHHHHHHHHHhhhhHHHH----HHHHHHHhhccccCCC
Confidence 356666666667777777777777777765 3345555555544444
No 228
>3vp9_A General transcriptional corepressor TUP1; four helix bundle; 1.80A {Saccharomyces cerevisiae} PDB: 3vp8_A
Probab=49.06 E-value=20 Score=29.56 Aligned_cols=70 Identities=19% Similarity=0.238 Sum_probs=48.4
Q ss_pred HHHHHHhHHHHHHHhhhHHHHHH-HHHhhhhhhhhhhhhHHHHHHHHHHhhhhhhhhhhhhhHHhhhhhhhhhhhHHHHH
Q 007520 105 MRNLVTRSEFLEKENAHLELEVE-KILGELNHQKDQNNLKREKIVQLEISLKNSKQYEMENSTYQKALADTTQLYEKKIA 183 (600)
Q Consensus 105 ~~~l~~~~~~~~~e~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~ 183 (600)
++.+...++++..|...+...-. +....+++|-..-.-++.++-+||..-..+| +.||++|.
T Consensus 16 LD~ir~Efe~~~~e~~~~k~q~~~eyE~ki~~Qi~Emq~Ir~tvyeLE~~h~kmK-----------------q~YEeEI~ 78 (92)
T 3vp9_A 16 LDAIRQEFLQVSQEANTYRLQNQKDYDFKMNQQLAEMQQIRNTVYERELTHRKMK-----------------DAYEEEIK 78 (92)
T ss_dssp -CCTTTTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHH
Confidence 34445555666666666654443 5566778888888888888888877766544 67889999
Q ss_pred HHHHHhHh
Q 007520 184 ELNKKLED 191 (600)
Q Consensus 184 ~l~~~l~~ 191 (600)
.|+..|+.
T Consensus 79 rLr~eLe~ 86 (92)
T 3vp9_A 79 HLKLGLEQ 86 (92)
T ss_dssp HHHHHHTC
T ss_pred HHHHHHHH
Confidence 99888874
No 229
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=48.27 E-value=2.6e+02 Score=29.74 Aligned_cols=26 Identities=15% Similarity=0.263 Sum_probs=17.2
Q ss_pred HHHHHHHHHhhhHHHHHHHHHhHHHH
Q 007520 90 FEKQLRESQISYDESMRNLVTRSEFL 115 (600)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~l~~~~~~~ 115 (600)
+..-|.+++...+.++..|+.+++.|
T Consensus 87 l~D~L~k~q~~V~~~LqeLe~~l~~l 112 (464)
T 1m1j_B 87 LQTTLLKQEKTVKPVLRDLKDRVAKF 112 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhHhHHHHHHHHHHHH
Confidence 34445677777777777777777544
No 230
>3pst_A Protein DOA1; protein degradation, CDC48, ubiquitin, nuclear protein; 2.00A {Saccharomyces cerevisiae} PDB: 3psp_A
Probab=48.27 E-value=2.7e+02 Score=29.33 Aligned_cols=131 Identities=11% Similarity=0.029 Sum_probs=75.7
Q ss_pred HHHHHHHHHHhhCCcchHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcCCccHHHHHH-hCchhhhHhhhc--
Q 007520 364 QIHAVKVVANLAAEDINQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMNEMNQGLIMS-RGGGQLLAKTAS-- 440 (600)
Q Consensus 364 r~~Aa~aL~nLa~~~~~~~~iv~~G~I~~Lv~lL~~~~~~~v~~~Al~aL~NLa~~~~~r~~I~~-~G~I~~Lv~lL~-- 440 (600)
+..+.-+|+-++.++... +.+..++.......++..+-.++++|+||..++.....++. ......++..+.
T Consensus 243 ~FPaLDLLRl~v~~p~~~------~~l~~li~~~l~~~~~an~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~~ 316 (425)
T 3pst_A 243 KTPAYDIVRLIVKKLPYS------SDIKDYIEEGLGNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTE 316 (425)
T ss_dssp CHHHHHHHHHHGGGCSCG------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHHHHHHHSCCC
T ss_pred ccHHHHHHHHHHcCCchH------HHHHHHHHHhcCCCChhHHHHHHHHHHHhcCCcchHHHHhhCchhHHHHHHHHHHH
Confidence 444566666555544332 12333332222245677888899999999999875444443 222333443331
Q ss_pred --cC---CCHHHHHHHHHHHHHHhCCc-hhHHHHHHcChHHHHHHHHc---------CCCHHHHHHHHHHHHHhhcCC
Q 007520 441 --KT---DDPQTLRMVAGALANLCGNE-KLHTMLEEDGAIKALLAMVR---------SGNIDVIAQVARGLANFAKCE 503 (600)
Q Consensus 441 --~~---~~~~v~~~Aa~aL~nLa~~~-e~r~~i~~~G~i~~Lv~lL~---------s~~~~v~~~A~~aL~nLa~~~ 503 (600)
.. .+..++.+++.++.|++..- ..+. +...+..++.++. ..+++....++-||++|...+
T Consensus 317 l~~~~~~~nkNl~IA~ATLllNlAv~~~~~~~---~~el~~~l~e~l~~~~g~~E~~~~d~EA~yRlLVALGtLv~~~ 391 (425)
T 3pst_A 317 FSQASAKQSQNLAIAVSTLIFNYSALVTKGNS---DLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVE 391 (425)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHHHHHHHHHSCS---CTTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHHC
T ss_pred hhhcccCCCchHHHHHHHHHHHHHHHHhcccc---hHHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhcC
Confidence 11 23467888888999997321 0000 1234445666554 258889999999999998654
No 231
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=47.25 E-value=2.9e+02 Score=29.52 Aligned_cols=118 Identities=12% Similarity=0.124 Sum_probs=66.2
Q ss_pred HhHHHHHHHHhhhccH-HHHHHHHHHHHHHHHHHhhhHHHHHHHHH---HHHHH----------HHHhhhc---------
Q 007520 29 LTAEIERKQKLRENDK-CELEKLLRECQISYDEAKDNLVTQVELLT---AKIEM----------QQKLREN--------- 85 (600)
Q Consensus 29 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~----------~~~~~~~--------- 85 (600)
.-+|+-|+|....+-+ ...||.+.+|+..+.++++.++|.-|++. .=|.+ +..+-.+
T Consensus 300 qeee~r~~qew~~~hp~~~Aer~~e~a~ael~~a~k~~a~~~er~~~t~~~~~~~~~~~~~~n~~~~~~~~~~~~f~~~n 379 (551)
T 2b5u_A 300 QDEENRRQQEWDATHPVEAAERNYERARAELNQANEDVARNQERQAKAVQVYNSRKSELDAANKTLADAIAEIKQFNRFA 379 (551)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGT
T ss_pred HHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhhHHHHHHHhhhhhhhhc
Confidence 3478888888874433 44677888999999999999987777655 22222 1111111
Q ss_pred --------hhHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHhhhHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHH
Q 007520 86 --------DKYEFEKQLRESQISYDESMRNLVTRSEFLEKENAHLELEVEKILGELNHQKDQNNLKREKIVQLEI 152 (600)
Q Consensus 86 --------~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (600)
+||-..- .+.| .-++.++++...|..+.+|.++--.++.- .|+.+|-..+...+..+.|+-
T Consensus 380 ~~p~~~Gh~~w~~~~--~~~~-~~~~dv~~~~a~~d~~~~~~s~~~~~ls~---~me~Rkq~e~k~k~ae~kl~~ 448 (551)
T 2b5u_A 380 HDPMAGGHRMWQMAG--LKAQ-RAQTDVNNKQAAFDAAAKEKSDADAALSS---AMESRKKKEDKKRSAENNLND 448 (551)
T ss_dssp TCTTSTHHHHHHHHH--HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
T ss_pred cChhhccchhhhhcc--chhh-hhhhhhhhHHHHHHHHhhcccchhhhhhh---hhhcccchhhhhhhhhhccch
Confidence 1221111 1111 12456777777777777777766665544 444444444444444444333
No 232
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=47.23 E-value=1.2e+02 Score=24.90 Aligned_cols=36 Identities=25% Similarity=0.448 Sum_probs=29.4
Q ss_pred hhhHHHHHHHHHhHHHHHHHhhhHHHHHHHHHhhhh
Q 007520 99 ISYDESMRNLVTRSEFLEKENAHLELEVEKILGELN 134 (600)
Q Consensus 99 ~~~~~~~~~l~~~~~~~~~e~~~~~~~~~~~~~~~~ 134 (600)
.-|...|..|..+++.+..+|.+++.|++.|..++.
T Consensus 52 ~~ye~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~ 87 (93)
T 3s4r_A 52 DLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIM 87 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346677779999999999999999999988766643
No 233
>2ic9_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 2.00A {Sin nombre virus}
Probab=46.41 E-value=85 Score=25.96 Aligned_cols=22 Identities=32% Similarity=0.424 Sum_probs=17.2
Q ss_pred hhhhhhHHHHHHHHHHhHhHHH
Q 007520 173 DTTQLYEKKIAELNKKLEDEHA 194 (600)
Q Consensus 173 ~~~~~~~~~~~~l~~~l~~e~~ 194 (600)
..+..++.+|++|+++|-+-.+
T Consensus 52 ~~V~~lq~Ki~elkr~lAd~v~ 73 (96)
T 2ic9_A 52 AAVSALETKLGELKRELADLIA 73 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 4778888899999888876544
No 234
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=45.17 E-value=65 Score=26.83 Aligned_cols=28 Identities=25% Similarity=0.557 Sum_probs=22.4
Q ss_pred chHHH-----hHHHHHHHHHHhHHHHHHHHhhh
Q 007520 14 DYESL-----CRKLETQVDHLTAEIERKQKLRE 41 (600)
Q Consensus 14 ~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~ 41 (600)
||.+| +++|...++.|..|+++..+.++
T Consensus 7 d~s~LPpeqRkkkL~~Ki~el~~ei~ke~~~re 39 (98)
T 2ke4_A 7 DFSHLPPEQQRKRLQQQLEERSRELQKEVDQRE 39 (98)
T ss_dssp CSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555 67888889999888888888876
No 235
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=45.05 E-value=2.4e+02 Score=29.47 Aligned_cols=40 Identities=5% Similarity=0.137 Sum_probs=22.2
Q ss_pred HHHHHHHHHhhhHHHHHHHHHhHHHHHHHhhhHHHHHHHHHhhh
Q 007520 90 FEKQLRESQISYDESMRNLVTRSEFLEKENAHLELEVEKILGEL 133 (600)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~e~~~~~~~~~~~~~~~ 133 (600)
++.=|.|++...+.++..|+.-+ +|.+++-.++.+|.+.|
T Consensus 25 i~d~L~k~e~~V~~~l~~LE~~l----~elsn~ts~v~~Lvk~i 64 (409)
T 1m1j_C 25 IADFFNKYRLTTDGELLEIEGLL----QQATNSTGSIEYLIQHI 64 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcchhHHHHHHHHH----HHHHHHHHHHHHHHHHH
Confidence 44556666666666665554433 45555555555555554
No 236
>3vp9_A General transcriptional corepressor TUP1; four helix bundle; 1.80A {Saccharomyces cerevisiae} PDB: 3vp8_A
Probab=44.69 E-value=76 Score=26.11 Aligned_cols=7 Identities=29% Similarity=0.577 Sum_probs=4.6
Q ss_pred hhhhhch
Q 007520 9 LKEEFDY 15 (600)
Q Consensus 9 ~~~~~~~ 15 (600)
||-|||.
T Consensus 19 ir~Efe~ 25 (92)
T 3vp9_A 19 IRQEFLQ 25 (92)
T ss_dssp TTTTTTT
T ss_pred HHHHHHH
Confidence 5667774
No 237
>2efl_A Formin-binding protein 1; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.61A {Homo sapiens} SCOP: a.238.1.4
Probab=44.25 E-value=2.3e+02 Score=27.44 Aligned_cols=14 Identities=14% Similarity=0.233 Sum_probs=7.0
Q ss_pred HHhHHHHHHHHhhh
Q 007520 28 HLTAEIERKQKLRE 41 (600)
Q Consensus 28 ~~~~~~~~~~~~~~ 41 (600)
.+..+.++..|...
T Consensus 109 ~~~~~~~~~rK~~~ 122 (305)
T 2efl_A 109 RYVQELKQERKSNF 122 (305)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33455555555554
No 238
>3mxz_A Tubulin-specific chaperone A; helix bundle; 1.60A {Arabidopsis thaliana}
Probab=44.00 E-value=1.5e+02 Score=25.32 Aligned_cols=93 Identities=22% Similarity=0.204 Sum_probs=47.1
Q ss_pred HHHHHHhhhHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHhhhhhhhhhhhhhHHhhhhhhhhhhhHHHHHHHHHHhHhH
Q 007520 113 EFLEKENAHLELEVEKILGELNHQKDQNNLKREKIVQLEISLKNSKQYEMENSTYQKALADTTQLYEKKIAELNKKLEDE 192 (600)
Q Consensus 113 ~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~l~~~l~~e 192 (600)
..|.||...|+.|+..-...+++-++.++.. ..+|+ +..==--.+..+-|...-...-+.+|...|...
T Consensus 18 kRL~KE~~~Y~kE~~~q~~kiekmk~e~~de--------y~iKk---q~evL~Et~~mipd~~~RL~~a~~~L~~~l~~~ 86 (116)
T 3mxz_A 18 KRIVKELHSYEKEVEREAAKTADMKDKGADP--------YDLKQ---QENVLGESRMMIPDCHKRLESALADLKSTLAEL 86 (116)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTCCH--------HHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCH--------HHHHH---HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh
Confidence 3667777777777776666665555432221 11111 110001124556666666677777777777643
Q ss_pred HHhhhhhHHHHHHHHHHHhhhhhc
Q 007520 193 HACFEGAVEQLDMVKKLLSDYQNS 216 (600)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~q~~ 216 (600)
...-....+++...+..|.+.+..
T Consensus 87 ~~~~~~~~ee~~~Ak~~l~~ae~~ 110 (116)
T 3mxz_A 87 EETDEKEGPEIEDAKKTVADVEKQ 110 (116)
T ss_dssp HTC-CCCCHHHHHHHHHHHHHHTC
T ss_pred cccCCCChHHHHHHHHHHHHHHHh
Confidence 111112344555555555555443
No 239
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=43.72 E-value=65 Score=26.70 Aligned_cols=42 Identities=17% Similarity=0.177 Sum_probs=29.9
Q ss_pred hHHHHHHHHHHhHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 007520 19 CRKLETQVDHLTAEIERKQKLRENDKCELEKLLRECQISYDEAKDNLVTQVELLTAK 75 (600)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (600)
|-.||..++++..|+.|.+..-. +.-.+|.+.+. ||++|+.+
T Consensus 39 Yl~LE~~~s~le~e~~rlr~~~~-----------~~~~~v~eLe~----everL~~E 80 (104)
T 3s9g_A 39 YLELEKSLSRMEDENNRLRLESK-----------RLDARVRELEL----ELDRLRAE 80 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHH----HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc-----------cchhhHHHHHH----HHHHHHHH
Confidence 44678888888899998887743 44566777666 77777654
No 240
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=43.50 E-value=1.2e+02 Score=23.83 Aligned_cols=33 Identities=18% Similarity=0.220 Sum_probs=26.7
Q ss_pred HHHHhHHHHHHHhhhHHHHHHHHHhhhhhhhhh
Q 007520 107 NLVTRSEFLEKENAHLELEVEKILGELNHQKDQ 139 (600)
Q Consensus 107 ~l~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~ 139 (600)
.+-.|++.++.+|..|+..++++...|+.-++.
T Consensus 4 ~~~~kLq~~E~~N~~Le~~v~~le~~Le~s~~~ 36 (72)
T 3cve_A 4 NSHMKLQEVEIRNKDLEGQLSEMEQRLEKSQSE 36 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 466788899999999999999988887665543
No 241
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=43.11 E-value=3.2e+02 Score=29.16 Aligned_cols=33 Identities=18% Similarity=0.254 Sum_probs=16.6
Q ss_pred HHHHHHhHHHHHHHHhhhccHHHHHHHHHHHHH
Q 007520 24 TQVDHLTAEIERKQKLRENDKCELEKLLRECQI 56 (600)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 (600)
+.|..-..|++|-||+-..-+.+-|+.+.|-+.
T Consensus 9 ~~la~yq~elarvqkana~aka~Ye~~~ae~~a 41 (497)
T 3iox_A 9 AKLTAYQTELARVQKANADAKAAYEAAVAANNA 41 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344555566666666554333444444444443
No 242
>4dvg_B Diaphanous protein; cytoskeleton, armadillo repeat, GTPase-binding domain, nucle binding, signaling protein, lipoprotein; HET: GSP; 2.60A {Entamoeba histolytica}
Probab=42.30 E-value=2.2e+02 Score=26.66 Aligned_cols=181 Identities=19% Similarity=0.195 Sum_probs=102.2
Q ss_pred HHHHHHHHccCCCHHHHHHHHHHHHHhhcCCccHHHHHHhCchhhhHhhhcc---CCCH----HHHHHHHHHHHHHhCCc
Q 007520 390 LDALLLLLRTSQNTTILRVASGAIANLAMNEMNQGLIMSRGGGQLLAKTASK---TDDP----QTLRMVAGALANLCGNE 462 (600)
Q Consensus 390 I~~Lv~lL~~~~~~~v~~~Al~aL~NLa~~~~~r~~I~~~G~I~~Lv~lL~~---~~~~----~v~~~Aa~aL~nLa~~~ 462 (600)
...|..+|.+..+..+........+. ..-.....++..||+..|+.+... ..++ +.-+.+|.+|+..-..+
T Consensus 68 pkyladllktrddmdllnemvvvfrs--ssvsfiktfvsvgglanlmaiykkkieaensntaideerkccevlryvfaee 145 (353)
T 4dvg_B 68 PKYLADLLKTRDDMDLLNEMVVVFRS--SSVSFIKTFVSVGGLANLMAIYKKKIEAENSNTAIDEERKCCEVLRYVFAEE 145 (353)
T ss_dssp HHHHHHHTTTCCCHHHHHHHHHHHHH--SCHHHHHHHHHTSTHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTSH
T ss_pred hHHHHHHHhccchHHHhhhheEEEec--cchhHHHHHhhhccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHhcc
Confidence 35677888877777766554444432 223456778888999988776532 1222 33456788898887776
Q ss_pred hhHHHHHH-cChHHHHHHHHcCC--CHHHHHHHHH---HHHHhhcCCch-hhhhcch----hhHHHHHhCC-----cHHH
Q 007520 463 KLHTMLEE-DGAIKALLAMVRSG--NIDVIAQVAR---GLANFAKCESR-AIVQGQR----KGRSHLMEDS-----ALEW 526 (600)
Q Consensus 463 e~r~~i~~-~G~i~~Lv~lL~s~--~~~v~~~A~~---aL~nLa~~~~~-~~~q~~~----~~r~~l~e~g-----~l~~ 526 (600)
+....+++ .||+..|+.-+.+. .|+-+...+- .-+.+..+.+. ...-|.. ..=.-++..| .+..
T Consensus 146 datvalieidggvelllkgmnskritpdnqldilleitltssmvehpsqeglylggdvcvmnafsnlvsegvdmkkflsf 225 (353)
T 4dvg_B 146 DATVALIEIDGGVELLLKGMNSKRITPDNQLDILLEITLTSSMVEHPSQEGLYLGGDVCVMNAFSNLVSEGVDMKKFLSF 225 (353)
T ss_dssp HHHHHHHTSTTHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHHCSBCTTSTTCBCCHHHHHHHHHHHHHHTTSCSSTTHHH
T ss_pred cceEEEEEecccHHHHhcccccCcCCCccccceeeeEeehhhhhcCccccceeecCceeeehhhHHHHhccccHHHHHHH
Confidence 66666555 69999998888653 2332221111 11122222110 0000000 0011122232 2333
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHhhcCch------hHHHHHHcccHHHHHHhh
Q 007520 527 LIANSKTNSASTRRHVELALCHLAQNED------NARDFISRGGAKELVQIS 572 (600)
Q Consensus 527 Lv~Ll~s~~~~v~~~Aa~aL~nLa~~~~------~~~~lv~~G~l~~Lv~ll 572 (600)
..-...+.++..++.....+.||...|+ .+..+++-|.+..|-++-
T Consensus 226 fslfsksksekfkhaslvlinnlidqpelehrmdvrnsfieiglvnelenmk 277 (353)
T 4dvg_B 226 FSLFSKSKSEKFKHASLVLINNLIDQPELEHRMDVRNSFIEIGLVNELENMK 277 (353)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTTTHHHHHHHHH
T ss_pred HHHHhhhhhhhcccceeehhhccccchhhHhhhhhhhhheeeehhhHhhhcc
Confidence 3334567788899999888999977665 445566778887776653
No 243
>3vem_A Helicase protein MOM1; coiled-coil, hendecad, transcriptional gene silencing, siRNA nucleus, chromatin, transcription; 3.20A {Arabidopsis thaliana}
Probab=41.49 E-value=1.7e+02 Score=25.02 Aligned_cols=25 Identities=16% Similarity=0.364 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHhH
Q 007520 88 YEFEKQLRESQISYDESMRNLVTRS 112 (600)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~l~~~~ 112 (600)
.++|+|+.+++..||.-+.+++..+
T Consensus 64 se~e~E~ae~k~KYD~~lqe~ese~ 88 (115)
T 3vem_A 64 AELERKMAEVQAEFRRKFHEVEAEH 88 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677888888888887777666554
No 244
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=41.24 E-value=1.5e+02 Score=25.50 Aligned_cols=38 Identities=8% Similarity=0.104 Sum_probs=19.1
Q ss_pred HHHHHHHhhhHHHHHHHHHhHHHHHHH-------hhhHHHHHHHH
Q 007520 92 KQLRESQISYDESMRNLVTRSEFLEKE-------NAHLELEVEKI 129 (600)
Q Consensus 92 ~~~~~~~~~~~~~~~~l~~~~~~~~~e-------~~~~~~~~~~~ 129 (600)
.|-..+-..|...+..|+..+++-+++ |.+|+.++..+
T Consensus 36 ~E~q~~v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~l 80 (120)
T 3i00_A 36 TESQRVVLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELDEL 80 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444445555555666555544443 44555555543
No 245
>1zoq_C CREB-binding protein, interferon regulatory factor 3; transcription regulation, transferase, transcription/transferase complex; 2.37A {Homo sapiens} SCOP: a.153.1.1 PDB: 1jjs_A
Probab=40.42 E-value=19 Score=25.48 Aligned_cols=34 Identities=24% Similarity=0.323 Sum_probs=29.1
Q ss_pred ccHHHHHHhhhcCChHHHHHHHHHHHhcCccccc
Q 007520 563 GGAKELVQISIESSREDIRNLAKKTMKSNPRLQA 596 (600)
Q Consensus 563 G~l~~Lv~ll~~~~~~~ir~~A~~~L~~~p~~~~ 596 (600)
+++..|++-+++++.++-......+|+++|-+-|
T Consensus 1 ~aLqqLl~tlksp~sp~qqqqvl~ILksnPqLMA 34 (47)
T 1zoq_C 1 SALQDLLRTLKSPSSPQQQQQVLNILKSNPQLMA 34 (47)
T ss_dssp CHHHHHHHTCCSCCCHHHHHHHHHHHHTCHHHHH
T ss_pred CHHHHHHHHhcCCCCHHHHHHHHHHHHcCHHHHH
Confidence 3567889999999999999999999999997654
No 246
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=40.02 E-value=2.8e+02 Score=28.98 Aligned_cols=42 Identities=12% Similarity=0.041 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHhhhchhHHHHHHHHHHHhhhHHHHHHHHHhH
Q 007520 71 LLTAKIEMQQKLRENDKYEFEKQLRESQISYDESMRNLVTRS 112 (600)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 112 (600)
+-..-||.|+..........|++-.-|-.-.+--..+|+.+.
T Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (471)
T 3mq9_A 397 NVTHLLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEK 438 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHhhhcchhHHHHHHHHHHHH
Confidence 333334444444444444445554444444444444444444
No 247
>3cl3_D NF-kappa-B essential modulator; death effector domain, coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia; 3.20A {Homo sapiens}
Probab=39.87 E-value=71 Score=27.80 Aligned_cols=49 Identities=20% Similarity=0.289 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhchhHHHH---HHHHHHHhhhHHHHHHHHHhHH
Q 007520 65 LVTQVELLTAKIEMQQKLRENDKYEFE---KQLRESQISYDESMRNLVTRSE 113 (600)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~ 113 (600)
+.-+++++...|.|+....+++|..|. ---.+.-.+|++.|++.....|
T Consensus 60 L~lQ~esmeaalkmEr~~~~eEKrkLAqLQ~AY~~LfqeYd~~lK~~~~~~e 111 (130)
T 3cl3_D 60 LRMQGQSVEAALRMERQAASEEKRKLAQLQVAYHQLFQEYDNHIKSSVVGSE 111 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 344788888888888888877776543 3444556799999988876663
No 248
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=39.83 E-value=1.1e+02 Score=25.40 Aligned_cols=58 Identities=22% Similarity=0.272 Sum_probs=35.0
Q ss_pred HhHHHHHHHHHHhHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHH
Q 007520 18 LCRKLETQVDHLTAEIERKQKLRENDKCELEKLLRECQISYDEAKDNLVTQVELLTAKIEMQQKLRENDKYEFEKQLRES 97 (600)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (600)
..-||..+||.-..|++-..+..+.+-.-||.....+ +.-.|.-.-|++||...
T Consensus 37 tfarLc~~Vd~t~~eL~~EI~~L~~eI~~LE~iqs~a--------------------------K~LRnKA~~L~~eLe~F 90 (96)
T 1t3j_A 37 TFARLCQQVDMTQKHLEEEIARLSKEIDQLEKMQNNS--------------------------KLLRNKAVQLESELENF 90 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------------------------HHHHHHHHHHHHHHHHH
Confidence 3457788888888887777777764444444332222 22222335678888877
Q ss_pred Hhhh
Q 007520 98 QISY 101 (600)
Q Consensus 98 ~~~~ 101 (600)
...|
T Consensus 91 ~~~y 94 (96)
T 1t3j_A 91 SKQF 94 (96)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 7766
No 249
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=38.04 E-value=91 Score=24.45 Aligned_cols=37 Identities=19% Similarity=0.159 Sum_probs=27.3
Q ss_pred HHHHHHHHHhHHHHHHHhhhHHHHHHHHHhhhhhhhh
Q 007520 102 DESMRNLVTRSEFLEKENAHLELEVEKILGELNHQKD 138 (600)
Q Consensus 102 ~~~~~~l~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~ 138 (600)
++++......++.|+++....+.+|+.|..++++=++
T Consensus 32 ~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKfrS 68 (72)
T 3nmd_A 32 IEELRQRDALIDELELELDQKDELIQMLQNELDKYRS 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3556677777888888888888888888877765443
No 250
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=38.03 E-value=1.4e+02 Score=23.62 Aligned_cols=50 Identities=18% Similarity=0.240 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHhh
Q 007520 223 VHELCVKLKETRQLHESAVYEVQTLKSEYKNLLEEKETMSDELQAARQRL 272 (600)
Q Consensus 223 ~~~l~~~~~d~~~~~e~~~~el~~l~~~~~~l~~~~~~~~~el~~~~~~l 272 (600)
..+++..+.++.........++..|..++..+........+.+......|
T Consensus 22 ~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kL 71 (81)
T 1ic2_A 22 AEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKL 71 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555666666666666666766677666544444444444444443333
No 251
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=37.69 E-value=69 Score=28.22 Aligned_cols=72 Identities=6% Similarity=-0.005 Sum_probs=51.5
Q ss_pred ChHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchhhhhcchhhHHHHHhCCcHHHHHHhhcCCCHHHHHHHHHHHHHhh
Q 007520 472 GAIKALLAMVRSGNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSKTNSASTRRHVELALCHLA 550 (600)
Q Consensus 472 G~i~~Lv~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~q~~~~~r~~l~e~g~l~~Lv~Ll~s~~~~v~~~Aa~aL~nLa 550 (600)
.++.++..-|.++++.++..|+..|-.++..+.. .....+.....+..|+.++...++.|+..+...+...+
T Consensus 42 ~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~-------~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~ 113 (140)
T 3ldz_A 42 DCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGK-------IFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWT 113 (140)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCH-------HHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCH-------HHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHH
Confidence 3667777778889999999998888888765422 22223334455666777776778999999998887775
No 252
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=37.51 E-value=1.6e+02 Score=34.69 Aligned_cols=182 Identities=13% Similarity=0.077 Sum_probs=93.3
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHhhC-CcchHHHHHHcCCHHHHHHHHcc---CCCHHHHHHHHHHHHHhhcCCccHH
Q 007520 349 LPKILQLLTSEDPDVQIHAVKVVANLAA-EDINQEKIVEEGGLDALLLLLRT---SQNTTILRVASGAIANLAMNEMNQG 424 (600)
Q Consensus 349 V~~Lv~LL~s~~~~vr~~Aa~aL~nLa~-~~~~~~~iv~~G~I~~Lv~lL~~---~~~~~v~~~Al~aL~NLa~~~~~r~ 424 (600)
+..|+.+--|.-+++|..|-.+|..+.. .++.+..+ +|.++..|.. +.+.+-.+ |||.-|....-.+.
T Consensus 135 l~dL~~Ls~S~Y~~VR~~AQ~~L~~~~~~~~gs~~~i-----ip~ll~~L~~~~~~~~~~~iK---GaLy~L~~k~~~~~ 206 (997)
T 1vsy_5 135 LVDIIQLATSLYPDIYKPAQGTLVHCMKQLVGSYGVV-----INKIIPSLEKAIKDHDYMKIQ---VILNVLLIKKIHRK 206 (997)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHTTBTTHHHHH-----HHHHHHHHHHHHHTCSCHHHH---HHHHHTTSHHHHHH
T ss_pred HHHHHHHhcCchHHHHHHHHHHHHHHHHhcccHHHHH-----HHHHHHHHhccccCCCHHHHH---HHHHHHhhhhhhhH
Confidence 4556666678899999999999999776 66666554 4555665543 33332223 34444432211111
Q ss_pred HHHH----hCchhhhHhhhccCCCHHHHHHHHHHHHHHhCC---ch---------------------------------h
Q 007520 425 LIMS----RGGGQLLAKTASKTDDPQTLRMVAGALANLCGN---EK---------------------------------L 464 (600)
Q Consensus 425 ~I~~----~G~I~~Lv~lL~~~~~~~v~~~Aa~aL~nLa~~---~e---------------------------------~ 464 (600)
..-+ ...++.|+.+. ..+.|.++..+-.+...+... +. .
T Consensus 207 ~~~d~~~~~~~~~ali~~~-~~dKpsI~~l~~~l~~~i~~~~~~p~~~~~~~~~~~~~i~~~d~~i~~~~~~~~~~~~~~ 285 (997)
T 1vsy_5 207 LMTDYKDIGRLIFLLIECC-RVNELEIGMYADKILTDIVIGIKIPSSVCVISDQAFLPLAPPDGTINLQVEAVKLAKKKK 285 (997)
T ss_dssp GGGCHHHHHHHHHHHHHTC-SCSSSSTTTHHHHHHHHHHTSCCCCCSCCCCCGGGTGGGCCSCSSTTSHHHHHHHHTTHH
T ss_pred HhcChHHHHHHHHHHHHhC-cCCCHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHH
Confidence 1111 12455555554 335555555444443333210 00 0
Q ss_pred HHHHHH--cChHHHHHHHHc-CCC--HHHHHHHHHHHHHhhcCCchhhhhcchhhHHHHHhCCcHHHHHHhhcCCCHHHH
Q 007520 465 HTMLEE--DGAIKALLAMVR-SGN--IDVIAQVARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSKTNSASTR 539 (600)
Q Consensus 465 r~~i~~--~G~i~~Lv~lL~-s~~--~~v~~~A~~aL~nLa~~~~~~~~q~~~~~r~~l~e~g~l~~Lv~Ll~s~~~~v~ 539 (600)
+....+ .+....|+.++. ..+ =.....+++.|.+|...-.. .....++..++..+.++++.++
T Consensus 286 r~~~~~~~~~L~~~l~~~~~~~~h~~Wk~~~~~~~~l~~l~~r~d~------------~~~~~~v~~~~~~l~~dhp~~R 353 (997)
T 1vsy_5 286 REYYLSLLVDLQDKLLDKLDNEKDMGWKIRMFILRFVTQIQSNLES------------KPDKRAVFSIISQISTKHPEII 353 (997)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSTTCCSCHHHHHHHHHHHHTCCSSC------------CCCHHHHHHHHGGGGGCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHhcCCC------------CCCHHHHHHHHHhhcCCCHHHH
Confidence 000100 122333344442 222 23344455555555432110 1123477788888999999999
Q ss_pred HHHHHHHHHhhc
Q 007520 540 RHVELALCHLAQ 551 (600)
Q Consensus 540 ~~Aa~aL~nLa~ 551 (600)
..|..++..+..
T Consensus 354 ~~a~~~l~~il~ 365 (997)
T 1vsy_5 354 HLVVKSLLSTCN 365 (997)
T ss_dssp HHHHHHHTHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999988866643
No 253
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=37.49 E-value=98 Score=27.54 Aligned_cols=73 Identities=15% Similarity=-0.049 Sum_probs=55.3
Q ss_pred ChHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchhhhhcchhhHHHHHhCCcHHHHHHhhcC------CCHHHHHHHHHH
Q 007520 472 GAIKALLAMVRSGNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSKT------NSASTRRHVELA 545 (600)
Q Consensus 472 G~i~~Lv~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~q~~~~~r~~l~e~g~l~~Lv~Ll~s------~~~~v~~~Aa~a 545 (600)
.++.++..-|.++++.++..|+.+|-.+...+. ......+.....+..|+.++.. .++.|+..+...
T Consensus 38 ~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG-------~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~l 110 (148)
T 1mhq_A 38 HAPWLLAHKIQSPQEKEALYALTVLEMCMNHCG-------EKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEI 110 (148)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSC-------HHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcC-------HHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHH
Confidence 356777778889999999999999998886542 2333445566778888888764 478999999988
Q ss_pred HHHhhc
Q 007520 546 LCHLAQ 551 (600)
Q Consensus 546 L~nLa~ 551 (600)
+...+.
T Consensus 111 i~~W~~ 116 (148)
T 1mhq_A 111 LFSWTV 116 (148)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 877753
No 254
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=37.39 E-value=3e+02 Score=29.15 Aligned_cols=46 Identities=15% Similarity=0.080 Sum_probs=26.3
Q ss_pred HHHHHhhhccHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhh
Q 007520 34 ERKQKLRENDKCELEKLLRECQISYDEAKDNLVTQVELLTAKIEMQQKLR 83 (600)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (600)
=+|++..+++-.+|+..+.+..++=+++.- =|..++..+..-++.+
T Consensus 87 ~kye~~V~~dl~~Le~~l~~isn~Ts~a~~----~v~~ik~s~~~~q~~~ 132 (461)
T 3ghg_B 87 LQQERPIRNSVDELNNNVEAVSQTSSSSFQ----YMYLLKDLWQKRQKQV 132 (461)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT----HHHHHHHHHHHHHHHH
T ss_pred HhcccchhhHHHHHHHHHHHHHhhhHHHHH----HHHHHHHHhccccCCC
Confidence 355566666666677777777666666665 3334455544444433
No 255
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=36.74 E-value=1.1e+02 Score=25.27 Aligned_cols=16 Identities=31% Similarity=0.277 Sum_probs=10.2
Q ss_pred hchHHHHHHHHhhhHH
Q 007520 260 TMSDELQAARQRLLVE 275 (600)
Q Consensus 260 ~~~~el~~~~~~l~~e 275 (600)
.+.-||..|++.+..|
T Consensus 76 ~Le~EIatYrkLLEGE 91 (95)
T 3mov_A 76 ALDMEISAYRKLLEGE 91 (95)
T ss_dssp HHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHccC
Confidence 4466777777766443
No 256
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=36.46 E-value=71 Score=33.56 Aligned_cols=29 Identities=17% Similarity=0.194 Sum_probs=17.8
Q ss_pred HHHHhhhccHHHHHHHHHHHHHHHHHHhh
Q 007520 35 RKQKLRENDKCELEKLLRECQISYDEAKD 63 (600)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 63 (600)
+|++...++-.+||.++.+.++.-++++.
T Consensus 31 k~e~~V~~~l~~LE~~l~elsn~ts~v~~ 59 (409)
T 1m1j_C 31 KYRLTTDGELLEIEGLLQQATNSTGSIEY 59 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcchhHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555556677777777766666654
No 257
>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1
Probab=36.26 E-value=2.7e+02 Score=29.56 Aligned_cols=37 Identities=16% Similarity=0.246 Sum_probs=26.5
Q ss_pred hHHHHHHHHhhhccH---HHHHHHHHHHHHHHHHHhhhHH
Q 007520 30 TAEIERKQKLRENDK---CELEKLLRECQISYDEAKDNLV 66 (600)
Q Consensus 30 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 66 (600)
|+|+|-.+|.+..|- +-|.+++.++++.|+.+++...
T Consensus 334 ~~~ve~~Kki~naevae~~~lrQRlddArNEItsaeSaIn 373 (602)
T 1cii_A 334 TEDVEGDKKIYNAEVAEWDKLRQRLLDARNKITSAESAVN 373 (602)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577888888886542 3355677888888888888654
No 258
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=35.52 E-value=2.9e+02 Score=29.35 Aligned_cols=25 Identities=16% Similarity=0.259 Sum_probs=17.4
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHhHH
Q 007520 89 EFEKQLRESQISYDESMRNLVTRSE 113 (600)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~l~~~~~ 113 (600)
.+..-|.||+...+.++..|+..++
T Consensus 81 glad~L~kye~~V~~dl~~Le~~l~ 105 (461)
T 3ghg_B 81 QLQEALLQQERPIRNSVDELNNNVE 105 (461)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHhcccchhhHHHHHHHHHH
Confidence 4556677777777777777766664
No 259
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=35.43 E-value=97 Score=28.04 Aligned_cols=71 Identities=11% Similarity=-0.004 Sum_probs=51.9
Q ss_pred hHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchhhhhcchhhHHHHHhCCcHHHHHHhhcC-CCHHHHHHHHHHHHHhh
Q 007520 473 AIKALLAMVRSGNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSKT-NSASTRRHVELALCHLA 550 (600)
Q Consensus 473 ~i~~Lv~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~q~~~~~r~~l~e~g~l~~Lv~Ll~s-~~~~v~~~Aa~aL~nLa 550 (600)
++..|..-|.++++.++..|+.+|-.+...+. ......+.....+..|+.++.. .++.|+..+...+...+
T Consensus 53 A~ral~krl~~~n~~vql~AL~LLd~~vkNcG-------~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~ 124 (163)
T 1x5b_A 53 CLKAIMKRVNHKVPHVALQALTLLGACVANCG-------KIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWS 124 (163)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTC-------HHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhh-------HHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHH
Confidence 56677777889999999999999888876532 2233334455667777777765 67899999988887764
No 260
>2p2u_A HOST-nuclease inhibitor protein GAM, putative; structural genomics, unknown function, PSI-2, protein structure initiative; 2.75A {Desulfovibrio vulgaris} SCOP: h.4.18.1
Probab=35.21 E-value=1.2e+02 Score=27.64 Aligned_cols=33 Identities=15% Similarity=0.115 Sum_probs=17.7
Q ss_pred HHHhhhHHHHHHHHHhHHHHHHHhhhHHHHHHH
Q 007520 96 ESQISYDESMRNLVTRSEFLEKENAHLELEVEK 128 (600)
Q Consensus 96 ~~~~~~~~~~~~l~~~~~~~~~e~~~~~~~~~~ 128 (600)
..+..|...+..|..+.++|+.....++..-++
T Consensus 45 ~ik~~~~~~~~~l~~~i~~l~~~l~~y~e~~r~ 77 (171)
T 2p2u_A 45 AAKARASQKSAPLLARRKELEDGVATFATLNKT 77 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 334444455555555555555555566655544
No 261
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=34.29 E-value=58 Score=29.55 Aligned_cols=69 Identities=10% Similarity=0.209 Sum_probs=52.9
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHhhCC--cchHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhh
Q 007520 349 LPKILQLLTSEDPDVQIHAVKVVANLAAE--DINQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLA 417 (600)
Q Consensus 349 V~~Lv~LL~s~~~~vr~~Aa~aL~nLa~~--~~~~~~iv~~G~I~~Lv~lL~~~~~~~v~~~Al~aL~NLa 417 (600)
+..|..-|.+.++.++..|+.+|-.|..+ +.....|.....+..|+.++....++.|+..++..+..-+
T Consensus 54 ~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~ 124 (163)
T 1x5b_A 54 LKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWS 124 (163)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHH
Confidence 55666667889999999999999888874 4456667766678888888875577888888887766554
No 262
>2xus_A Breast cancer metastasis-suppressor 1; protein binding; 1.912A {Homo sapiens}
Probab=34.28 E-value=94 Score=22.50 Aligned_cols=22 Identities=14% Similarity=0.215 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhHH
Q 007520 45 CELEKLLRECQISYDEAKDNLV 66 (600)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~ 66 (600)
.++|++-.+|-...+..|++|.
T Consensus 2 ~~~errr~e~ld~l~~LEkqF~ 23 (49)
T 2xus_A 2 EDYERRRSECVSEMLDLEKQFS 23 (49)
T ss_dssp ---CHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777888888888888776
No 263
>3caz_A BAR protein; thermo-acidophilic RED ALGA, protein structure initiative, PSI, center for eukaryotic structural genomics, signaling protein; 3.34A {Galdieria sulphuraria}
Probab=34.09 E-value=2.9e+02 Score=25.63 Aligned_cols=19 Identities=32% Similarity=0.455 Sum_probs=11.4
Q ss_pred hHHHHHHHHHhHHHHHHHh
Q 007520 101 YDESMRNLVTRSEFLEKEN 119 (600)
Q Consensus 101 ~~~~~~~l~~~~~~~~~e~ 119 (600)
|..-|+.-..|+++|+|-+
T Consensus 127 ~RLiYDHYKlKvdELEK~~ 145 (294)
T 3caz_A 127 YRERYDHYKVKLDNLEKKN 145 (294)
T ss_dssp HHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhHHHHHhcc
Confidence 3355566667776666644
No 264
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=32.84 E-value=1.3e+02 Score=26.86 Aligned_cols=72 Identities=15% Similarity=0.021 Sum_probs=54.1
Q ss_pred hHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchhhhhcchhhHHHHHhCCcHHHHHHhhcC------CCHHHHHHHHHHH
Q 007520 473 AIKALLAMVRSGNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSKT------NSASTRRHVELAL 546 (600)
Q Consensus 473 ~i~~Lv~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~q~~~~~r~~l~e~g~l~~Lv~Ll~s------~~~~v~~~Aa~aL 546 (600)
++..|..-+.++++.++..|+.+|-.++..+. ......+.....+..|+.++.. .++.|+..+...+
T Consensus 49 a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG-------~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li 121 (149)
T 3g2s_A 49 ATRLLAHKIQSPQEWEAIQALTVLETCMKSCG-------KRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELL 121 (149)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCC-------HHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcC-------HHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHH
Confidence 66778888889999999999999988876542 2223335555677778888753 5789999999999
Q ss_pred HHhhc
Q 007520 547 CHLAQ 551 (600)
Q Consensus 547 ~nLa~ 551 (600)
...+.
T Consensus 122 ~~W~~ 126 (149)
T 3g2s_A 122 YSWTV 126 (149)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88753
No 265
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=32.43 E-value=47 Score=24.67 Aligned_cols=33 Identities=15% Similarity=0.239 Sum_probs=24.0
Q ss_pred hhHHHHHHHHHhHHHHHHHhhhHHHHHHHHHhh
Q 007520 100 SYDESMRNLVTRSEFLEKENAHLELEVEKILGE 132 (600)
Q Consensus 100 ~~~~~~~~l~~~~~~~~~e~~~~~~~~~~~~~~ 132 (600)
+.|+=+..+...++.|.+||..|..++.++...
T Consensus 24 EVD~FLd~v~~~~~~l~~e~~~L~~~~~~l~~~ 56 (57)
T 2wuj_A 24 EVNEFLAQVRKDYEIVLRKKTELEAKVNELDER 56 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 455667788888889999999999998886543
No 266
>1h7c_A Tubulin-specific chaperone A; protein folding, cofactor A; 1.8A {Homo sapiens} SCOP: a.7.5.1
Probab=32.38 E-value=2.3e+02 Score=23.87 Aligned_cols=42 Identities=19% Similarity=0.297 Sum_probs=27.9
Q ss_pred hhhhhhhhhhhHHHHHHHHHHhHhHHHhhhhhHHHHHHHHHHHh
Q 007520 168 QKALADTTQLYEKKIAELNKKLEDEHACFEGAVEQLDMVKKLLS 211 (600)
Q Consensus 168 ~~~l~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~~~~~~~~~ 211 (600)
+..+-|...-...-+.+|...|+.|-.. ...+++...+..|.
T Consensus 61 ~~mipd~~~Rl~~a~~~L~~~l~~e~~~--~~~ee~~~Ake~l~ 102 (108)
T 1h7c_A 61 RMMIPDCQRRLEAAYLDLQRILENEKDL--EEAEEYKEARLVLD 102 (108)
T ss_dssp HTTHHHHHHHHHHHHHHHHHHHHHCGGG--TTSHHHHHHHHHHH
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHhcccC--CCcHHHHHHHHHHH
Confidence 5677788888888899999999866322 33445555444444
No 267
>2xpp_A IWS1, ECU08_0440; transcription, elongation, histone chaperone, RNA polymerase mRNA export; 1.74A {Encephalitozoon cuniculi} PDB: 2xpo_A 2xpn_A 2xpl_A
Probab=32.36 E-value=2e+02 Score=25.51 Aligned_cols=82 Identities=13% Similarity=0.172 Sum_probs=59.9
Q ss_pred HHhCCchhHHHHHHcChHHHHHHHHc------CCCHHHHHHHHHHHHHhhcCCchhhhhcchhhHHHHHhCCcHHHHHHh
Q 007520 457 NLCGNEKLHTMLEEDGAIKALLAMVR------SGNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIAN 530 (600)
Q Consensus 457 nLa~~~e~r~~i~~~G~i~~Lv~lL~------s~~~~v~~~A~~aL~nLa~~~~~~~~q~~~~~r~~l~e~g~l~~Lv~L 530 (600)
........+..+++.|++..+-..|. -++..++...+.+|.+|-.. ++.+.+.|.-..++.+
T Consensus 46 ~~l~k~~l~~~~ld~giL~~l~~WL~PLpDgsLP~~~Ir~~lL~~L~~lPI~------------~e~Lk~SglGkvv~~l 113 (145)
T 2xpp_A 46 DILMSKALQESLLDEGILDEIKGWLEPLPDKSMPNIKIRKRLLDVLKTMKIH------------KEHLVTSGVGKIVYFY 113 (145)
T ss_dssp HHHTCTTTHHHHHHTTHHHHHHHHHSCCTTSCCCCHHHHHHHHHHHHTSCCC------------HHHHHHHCHHHHHHHH
T ss_pred HHHhhHHHHHHHHHcCHHHHHHHHhCcCCCCCCCCHHHHHHHHHHHHHCCCC------------HHHhhcCCCCcchhhh
Confidence 33455677889999999999999985 25778999999999998532 4456666666666666
Q ss_pred hcCC--CHHHHHHHHHHHHHhh
Q 007520 531 SKTN--SASTRRHVELALCHLA 550 (600)
Q Consensus 531 l~s~--~~~v~~~Aa~aL~nLa 550 (600)
-+++ .+..+..|-..+...+
T Consensus 114 ~k~~~et~~nk~la~~Li~~Ws 135 (145)
T 2xpp_A 114 SINPKESKEVRASAKALVQKWT 135 (145)
T ss_dssp HHCTTSCHHHHHHHHHHHHHHH
T ss_pred hcCCccCHHHHHHHHHHHHHHH
Confidence 5554 5778888877776553
No 268
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=31.76 E-value=52 Score=31.52 Aligned_cols=70 Identities=14% Similarity=0.238 Sum_probs=54.4
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHhhCC--cchHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhc
Q 007520 349 LPKILQLLTSEDPDVQIHAVKVVANLAAE--DINQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAM 418 (600)
Q Consensus 349 V~~Lv~LL~s~~~~vr~~Aa~aL~nLa~~--~~~~~~iv~~G~I~~Lv~lL~~~~~~~v~~~Al~aL~NLa~ 418 (600)
+..|..-|.+.++.++..|+.+|-.+..| +.....|.....+..|+.++....+..|+..++..+...+.
T Consensus 47 ~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 118 (226)
T 3zyq_A 47 VNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAH 118 (226)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 56666677899999999999999988874 33466677666777888888767788888888888776653
No 269
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=30.43 E-value=3.6e+02 Score=32.14 Aligned_cols=132 Identities=12% Similarity=0.014 Sum_probs=79.5
Q ss_pred HHHccCCCHHHHHHHHHHHHHhhcCCccHHHHHHhCchhhhHhhhc-cCCCHHHHHHHHHHHHHHhC------CchhHHH
Q 007520 395 LLLRTSQNTTILRVASGAIANLAMNEMNQGLIMSRGGGQLLAKTAS-KTDDPQTLRMVAGALANLCG------NEKLHTM 467 (600)
Q Consensus 395 ~lL~~~~~~~v~~~Al~aL~NLa~~~~~r~~I~~~G~I~~Lv~lL~-~~~~~~v~~~Aa~aL~nLa~------~~e~r~~ 467 (600)
.++.++.+...+..|-..|..+-.+++ ++..+...|. .+.++.++..|+.+|.|... +++.+..
T Consensus 19 ~~~~p~~~~~~r~~Ae~~L~~~~~~p~---------~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~~ 89 (1204)
T 3a6p_A 19 VMMDPNSTQRYRLEALKFCEEFKEKCP---------ICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNGMSRLEKVY 89 (1204)
T ss_dssp HHHCTTCCHHHHHHHHHHHHHHHHHCT---------THHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGGGSCHHHHHH
T ss_pred HHhCCCCChHHHHHHHHHHHHHHhCch---------HHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcccCCHHHHHH
Confidence 334433467778888888887755443 4444444443 44577888888889998862 2333333
Q ss_pred HHHcChHHHHHHHHc---CCCHHHHHHHHHHHHHhhcCC-chhhhhcchhhHHHHHhCCcHHHHHHhhcCCCHHHHHHHH
Q 007520 468 LEEDGAIKALLAMVR---SGNIDVIAQVARGLANFAKCE-SRAIVQGQRKGRSHLMEDSALEWLIANSKTNSASTRRHVE 543 (600)
Q Consensus 468 i~~~G~i~~Lv~lL~---s~~~~v~~~A~~aL~nLa~~~-~~~~~q~~~~~r~~l~e~g~l~~Lv~Ll~s~~~~v~~~Aa 543 (600)
|. ...+..+..... ...+.++...+.+++.++..+ |... .+.++.|+.++.+ ++..+..+.
T Consensus 90 Ir-~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~~W-------------p~ll~~L~~~~~~-~~~~~e~~L 154 (1204)
T 3a6p_A 90 LK-NSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQHW-------------PDMLIELDTLSKQ-GETQTELVM 154 (1204)
T ss_dssp HH-HHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTTTC-------------TTHHHHHHHHHHT-CHHHHHHHH
T ss_pred HH-HHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCcccc-------------hHHHHHHHHHhcC-CHHHHHHHH
Confidence 32 223333322211 146788999999999998653 1100 3567777777765 455677777
Q ss_pred HHHHHhh
Q 007520 544 LALCHLA 550 (600)
Q Consensus 544 ~aL~nLa 550 (600)
.+|..|+
T Consensus 155 ~iL~~L~ 161 (1204)
T 3a6p_A 155 FILLRLA 161 (1204)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7777775
No 270
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=29.96 E-value=1.3e+02 Score=27.30 Aligned_cols=72 Identities=18% Similarity=0.024 Sum_probs=54.3
Q ss_pred hHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchhhhhcchhhHHHHHhCCcHHHHHHhhcC------CCHHHHHHHHHHH
Q 007520 473 AIKALLAMVRSGNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSKT------NSASTRRHVELAL 546 (600)
Q Consensus 473 ~i~~Lv~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~q~~~~~r~~l~e~g~l~~Lv~Ll~s------~~~~v~~~Aa~aL 546 (600)
++..|..-+.++++.++..|+.+|-.+...+. ......+.....+..|+.++.. .+..|+..+...+
T Consensus 51 A~ral~krl~~~n~~vql~AL~LLd~~vkNCG-------~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li 123 (171)
T 1juq_A 51 AVRLLAHKIQSPQEWEALQALTVLEACMKNCG-------RRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELL 123 (171)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSH-------HHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcC-------HHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHH
Confidence 56678888889999999999999998886542 2233345556677888888753 4689999999999
Q ss_pred HHhhc
Q 007520 547 CHLAQ 551 (600)
Q Consensus 547 ~nLa~ 551 (600)
...+.
T Consensus 124 ~~W~~ 128 (171)
T 1juq_A 124 YSWTM 128 (171)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87753
No 271
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=29.39 E-value=2.4e+02 Score=23.29 Aligned_cols=43 Identities=14% Similarity=0.192 Sum_probs=22.3
Q ss_pred hhHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHhhhHHHHHHH
Q 007520 86 DKYEFEKQLRESQISYDESMRNLVTRSEFLEKENAHLELEVEK 128 (600)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~e~~~~~~~~~~ 128 (600)
|+......+.+-.......++.|+.+.+.++++...+...+..
T Consensus 67 ~~~ea~~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~~ 109 (117)
T 2zqm_A 67 TKDKAVAELKEKIETLEVRLNALERQEKKLNEKLKELTAQIQS 109 (117)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555444455555555555555555555555444444
No 272
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=29.17 E-value=1.1e+02 Score=26.87 Aligned_cols=68 Identities=9% Similarity=0.135 Sum_probs=48.7
Q ss_pred hhhhHhhhccCCCHHHHHHHHHHHHHHhC--CchhHHHHHHcChHHHHHHHHcCCCHHHHHHHHHHHHHhh
Q 007520 432 GQLLAKTASKTDDPQTLRMVAGALANLCG--NEKLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFA 500 (600)
Q Consensus 432 I~~Lv~lL~~~~~~~v~~~Aa~aL~nLa~--~~e~r~~i~~~G~i~~Lv~lL~s~~~~v~~~A~~aL~nLa 500 (600)
+..|..-|. +.+|.++..|+.+|-.++. .+.....+.+...+..|+.++...++.|+..++..+...+
T Consensus 44 ~rai~Krl~-~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~ 113 (140)
T 3ldz_A 44 LRSIMRRVN-HKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWT 113 (140)
T ss_dssp HHHHHHHHT-CSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHc-CCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHH
Confidence 444445553 4677787777777766653 3556666767777778888887788999999999888776
No 273
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=27.81 E-value=89 Score=22.81 Aligned_cols=41 Identities=29% Similarity=0.305 Sum_probs=30.4
Q ss_pred HHHhHHHHHHHhhhHHHHHHHHHhhhhhhhhhhhhHHHHHH
Q 007520 108 LVTRSEFLEKENAHLELEVEKILGELNHQKDQNNLKREKIV 148 (600)
Q Consensus 108 l~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (600)
|.++-||-++.-..|+.+|++|..++-.+|..+-.+++...
T Consensus 3 ~~~~aefAERsV~KLek~ID~LEdeL~~eKek~~~i~~eLD 43 (52)
T 2z5i_A 3 LLSKNYHLENEVARLKKLVDDLEDELYAQKLKYKAISEELD 43 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 45667788888888888888888888777766666555444
No 274
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=27.44 E-value=1.8e+02 Score=21.23 Aligned_cols=46 Identities=17% Similarity=0.182 Sum_probs=23.2
Q ss_pred HHHHHHHhHHHHHHHhhhHHHHHHHHHhhhhhhhhhhhhHHHHHHH
Q 007520 104 SMRNLVTRSEFLEKENAHLELEVEKILGELNHQKDQNNLKREKIVQ 149 (600)
Q Consensus 104 ~~~~l~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (600)
.+.+++..++.+.-+.+....+++.+...+++.....+.+++.+..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~ 51 (60)
T 3htk_A 6 TKKTLENQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRDEVIK 51 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555444445555555555555555555444444444443
No 275
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=27.25 E-value=97 Score=27.66 Aligned_cols=71 Identities=8% Similarity=0.055 Sum_probs=54.3
Q ss_pred CHHHHHHhhCCCCHHHHHHHHHHHHHhhCC--cchHHHHHHcCCHHHHHHHHcc-----CCCHHHHHHHHHHHHHhhc
Q 007520 348 GLPKILQLLTSEDPDVQIHAVKVVANLAAE--DINQEKIVEEGGLDALLLLLRT-----SQNTTILRVASGAIANLAM 418 (600)
Q Consensus 348 gV~~Lv~LL~s~~~~vr~~Aa~aL~nLa~~--~~~~~~iv~~G~I~~Lv~lL~~-----~~~~~v~~~Al~aL~NLa~ 418 (600)
++..|..-+.+.++.++..|+.+|-.|..| +.+...|.....+..|+.++.+ ..+..++..++..+..-+.
T Consensus 49 a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 126 (149)
T 3g2s_A 49 ATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTV 126 (149)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHH
Confidence 366666777899999999999999998874 3446777777788889988863 2567888888877776654
No 276
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=26.79 E-value=2e+02 Score=22.54 Aligned_cols=44 Identities=30% Similarity=0.255 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHhhhHH
Q 007520 225 ELCVKLKETRQLHESAVYEVQTLKSEYKNLLEEKETMSDELQAARQRLLVE 275 (600)
Q Consensus 225 ~l~~~~~d~~~~~e~~~~el~~l~~~~~~l~~~~~~~~~el~~~~~~l~~e 275 (600)
.++.++.++++..+.+-.|-+ .|...+-.+.-||..|++.|..|
T Consensus 16 ~lE~eL~~~r~e~~~ql~EYq-------~LlniKl~Le~EIatYRkLLEGE 59 (74)
T 2xv5_A 16 EKEREMAEMRARMQQQLDEYQ-------ELLDIKLALDMEIHAYRKLLEGE 59 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhcC
Confidence 344445555555544433321 22333334567777777777554
No 277
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=26.63 E-value=2.6e+02 Score=22.80 Aligned_cols=13 Identities=31% Similarity=0.358 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHhh
Q 007520 51 LRECQISYDEAKD 63 (600)
Q Consensus 51 ~~~~~~~~~~~~~ 63 (600)
+.+++..+.|++.
T Consensus 36 i~~ie~~ldEA~e 48 (97)
T 3onj_A 36 LKHVEQQQDELFD 48 (97)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3444445555444
No 278
>3vld_A DNA mismatch repair protein HSM3; heat repeat, RPT1, chaperone; HET: DNA; 2.05A {Saccharomyces cerevisiae} PDB: 3vle_A* 3vlf_A* 4a3v_A* 4a3t_A*
Probab=26.55 E-value=3.9e+02 Score=28.66 Aligned_cols=132 Identities=17% Similarity=0.150 Sum_probs=85.6
Q ss_pred CHHHHHHHHHHHHHhhCCcchHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcCCccHHHHHHhCchhhhHhhh
Q 007520 360 DPDVQIHAVKVVANLAAEDINQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMNEMNQGLIMSRGGGQLLAKTA 439 (600)
Q Consensus 360 ~~~vr~~Aa~aL~nLa~~~~~~~~iv~~G~I~~Lv~lL~~~~~~~v~~~Al~aL~NLa~~~~~r~~I~~~G~I~~Lv~lL 439 (600)
|++....-...+...+.++ .+.+.-.+..++..|. +.++.+...||.++. ....+..+...+.+..|+.++
T Consensus 92 D~~~Li~Ll~~il~~~~Fd----~VLevysve~i~~aL~-S~~~~l~~~~ckVI~----~s~pk~lfa~t~iidiLL~ly 162 (500)
T 3vld_A 92 NYDYLLDVVDKLVPMADFD----DVLEVYSAEDLVKALR-SEIDPLKVAACRVIE----NSQPKGLFATSNIIDILLDIL 162 (500)
T ss_dssp CHHHHHHHHHHHHHHSCHH----HHHHHSCHHHHHHHHT-SSCHHHHHHHHHHHH----TCSSGGGGTTSSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCHH----HHHHhCCHHHHHHHHh-cCChHHHHHHHHHhc----ccCchhHhccChHHHHHHHHH
Confidence 4554333333444433322 3455556888899998 447888888888887 556677778889999999998
Q ss_pred ccCCCH-H-HHHHHHHHHHHHhCCchhHHHHHHcChHHHHHHHHcCCCHHHHHHHHHHHHHhhc
Q 007520 440 SKTDDP-Q-TLRMVAGALANLCGNEKLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFAK 501 (600)
Q Consensus 440 ~~~~~~-~-v~~~Aa~aL~nLa~~~e~r~~i~~~G~i~~Lv~lL~s~~~~v~~~A~~aL~nLa~ 501 (600)
...+.+ . +.-..=.++..|+++.=+|..+.+. .++.+..+=+..++-+..+-...+.-+..
T Consensus 163 Fd~~t~i~~vvn~IE~~~~~LssdeLirrril~n-nl~lL~~vK~~~~~i~~sRLLdll~il~~ 225 (500)
T 3vld_A 163 FDEKVENDKLITAIEKALERLSTDELIRRRLFDN-NLPYLVSVKGRMETVSFVRLIDFLTIEFQ 225 (500)
T ss_dssp TCTTCCCHHHHHHHHHHHHHHTTSHHHHHHHHTT-THHHHHHHHHHCCHHHHHHHHHHHHHHHT
T ss_pred cCCCCCcHHHHHHHHHHHHHcCchHHHHHHHHHH-hHHHHHHHhcCCCceeHHHHHHHHHHHhc
Confidence 765444 3 5444445888888777677777754 55655555456777666666666665543
No 279
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=25.69 E-value=2.3e+02 Score=23.75 Aligned_cols=38 Identities=16% Similarity=0.274 Sum_probs=24.2
Q ss_pred hhhhhhhhhhhHHHHHHHHHHhHhHHHhhhhhHHHHHH
Q 007520 168 QKALADTTQLYEKKIAELNKKLEDEHACFEGAVEQLDM 205 (600)
Q Consensus 168 ~~~l~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~~~ 205 (600)
.+.|.+.....|.|++--+.+|+++...++.--++++.
T Consensus 37 ieeLQ~Ei~~~E~QL~iArQKLkdAe~~~E~DPDevNK 74 (107)
T 2k48_A 37 LQELQENITAHEQQLVTARQKLKDAEKAVEVDPDDVNK 74 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHH
Confidence 34555566667777777777777776665555555555
No 280
>3cl3_D NF-kappa-B essential modulator; death effector domain, coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia; 3.20A {Homo sapiens}
Probab=24.87 E-value=1.7e+02 Score=25.43 Aligned_cols=60 Identities=15% Similarity=0.161 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHH
Q 007520 51 LRECQISYDEAKDNLVTQVELLTAKIEMQQKLRENDKYEFEKQLRESQISYDESMRNLVTRSEFLEKE 118 (600)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~e 118 (600)
+.|++....+++. .+-.|+.......-....++-|+...+..+.=.+++|..+.++|+.+
T Consensus 11 LqEsqskL~~Ae~--------~k~~Leek~~~~e~~~~~~~~Elee~kqq~~~~~d~L~lQ~esmeaa 70 (130)
T 3cl3_D 11 LQESQSRLEAATK--------ECQALEGRARAASEQARQLESEREALQQQHSVQVDQLRMQGQSVEAA 70 (130)
T ss_dssp ------------------------------------------------CTTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666665 22233333333333335666666665566666677777777665544
No 281
>1gk7_A Vimentin; intermediate filament, heptad repeat; 1.4A {Homo sapiens} SCOP: h.1.20.1 PDB: 3g1e_A
Probab=24.54 E-value=1.3e+02 Score=20.57 Aligned_cols=18 Identities=39% Similarity=0.558 Sum_probs=12.7
Q ss_pred HhHHHHHHHhhhHHHHHH
Q 007520 110 TRSEFLEKENAHLELEVE 127 (600)
Q Consensus 110 ~~~~~~~~e~~~~~~~~~ 127 (600)
.|+-+|+.+|+.|+.++.
T Consensus 20 dkVR~LE~~N~~Le~~i~ 37 (39)
T 1gk7_A 20 DKVRFLEQQNKILLAELE 37 (39)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455567778888887764
No 282
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=24.36 E-value=6.2e+02 Score=26.38 Aligned_cols=26 Identities=15% Similarity=0.138 Sum_probs=17.6
Q ss_pred HHHHHHHHHhhhHHHHHHHHHhHHHH
Q 007520 90 FEKQLRESQISYDESMRNLVTRSEFL 115 (600)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~l~~~~~~~ 115 (600)
+..-|.||+...+.++..|+..++.+
T Consensus 25 l~d~L~kye~~V~~~l~~L~~~l~~i 50 (411)
T 3ghg_C 25 IADFLSTYQTKVDKDLQSLEDILHQV 50 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccchhhHHHHHHHHHHHH
Confidence 45567777777777777777666433
No 283
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=24.32 E-value=1.1e+02 Score=29.24 Aligned_cols=67 Identities=9% Similarity=0.060 Sum_probs=48.4
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHhhcCc--hhHHHHHHcccHHHHHHhhhcCChHHHHHHHHHHHh
Q 007520 523 ALEWLIANSKTNSASTRRHVELALCHLAQNE--DNARDFISRGGAKELVQISIESSREDIRNLAKKTMK 589 (600)
Q Consensus 523 ~l~~Lv~Ll~s~~~~v~~~Aa~aL~nLa~~~--~~~~~lv~~G~l~~Lv~ll~~~~~~~ir~~A~~~L~ 589 (600)
++..|..-+.+.++.++..|...|-.|..+- .....+.....+..|..++.......+++.+..++.
T Consensus 46 a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~ 114 (226)
T 3zyq_A 46 AVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQ 114 (226)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHH
Confidence 5566677778899999999999888887643 345666666777888888876555667777665543
No 284
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=24.08 E-value=1e+02 Score=27.39 Aligned_cols=71 Identities=8% Similarity=0.028 Sum_probs=54.6
Q ss_pred CHHHHHHhhCCCCHHHHHHHHHHHHHhhCC--cchHHHHHHcCCHHHHHHHHcc-----CCCHHHHHHHHHHHHHhhc
Q 007520 348 GLPKILQLLTSEDPDVQIHAVKVVANLAAE--DINQEKIVEEGGLDALLLLLRT-----SQNTTILRVASGAIANLAM 418 (600)
Q Consensus 348 gV~~Lv~LL~s~~~~vr~~Aa~aL~nLa~~--~~~~~~iv~~G~I~~Lv~lL~~-----~~~~~v~~~Al~aL~NLa~ 418 (600)
++..|..-|.+.++.++..|+.+|-.|..| +.....|.....+..|+.++.+ ..+..++..++..+..-+.
T Consensus 39 a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (148)
T 1mhq_A 39 APWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTV 116 (148)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 366666777899999999999999998874 4457777777788888888863 2477888888877776653
No 285
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=24.05 E-value=7.3e+02 Score=27.09 Aligned_cols=34 Identities=9% Similarity=0.011 Sum_probs=18.7
Q ss_pred HHHHHHHHHhHHHHHHHhhhHHHHHHHHHhhhhh
Q 007520 102 DESMRNLVTRSEFLEKENAHLELEVEKILGELNH 135 (600)
Q Consensus 102 ~~~~~~l~~~~~~~~~e~~~~~~~~~~~~~~~~~ 135 (600)
...+..-..|-|..++|+..|+.--+++...+.+
T Consensus 486 ~k~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~~ 519 (592)
T 1f5n_A 486 EKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQ 519 (592)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455556666666666665655555533
No 286
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=23.97 E-value=3.9e+02 Score=23.90 Aligned_cols=11 Identities=27% Similarity=0.341 Sum_probs=0.0
Q ss_pred HhhhHHHHHHH
Q 007520 98 QISYDESMRNL 108 (600)
Q Consensus 98 ~~~~~~~~~~l 108 (600)
++-|+.++..+
T Consensus 19 ~~~~~~~md~~ 29 (152)
T 3a7p_A 19 SNPQTDSMDDL 29 (152)
T ss_dssp -----------
T ss_pred cCCcchhHHHH
Confidence 45555555554
No 287
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=23.27 E-value=2.9e+02 Score=22.17 Aligned_cols=29 Identities=34% Similarity=0.394 Sum_probs=20.8
Q ss_pred HHHHHHhHHHHHHHhhhHHHHHHHHHhhh
Q 007520 105 MRNLVTRSEFLEKENAHLELEVEKILGEL 133 (600)
Q Consensus 105 ~~~l~~~~~~~~~e~~~~~~~~~~~~~~~ 133 (600)
+...+.+.+.|.+.+..|+..+.++...+
T Consensus 58 l~eaEe~~~~L~~~K~eLE~~l~el~~rl 86 (89)
T 3bas_A 58 MKQLEDKVEELLSKNYHLENEVARLKKLV 86 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45667777777888888888887765544
No 288
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=22.90 E-value=1.6e+02 Score=30.58 Aligned_cols=65 Identities=14% Similarity=0.121 Sum_probs=43.2
Q ss_pred ChHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchhhhhcchhhHHHHHhCCcHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 007520 472 GAIKALLAMVRSGNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSKTNSASTRRHVELALCHL 549 (600)
Q Consensus 472 G~i~~Lv~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~q~~~~~r~~l~e~g~l~~Lv~Ll~s~~~~v~~~Aa~aL~nL 549 (600)
.+++.++.+..+.+..++..++..|.-.+....+. + ..+++.|..++.+.++.|...+..+..++
T Consensus 63 ~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~~el-----------~--~~~l~~L~~LL~d~d~~V~K~~I~~~tsl 127 (386)
T 3o2t_A 63 NFLDEIIAFQADKSIEVRKFVIGFIEEACKRDIEL-----------L--LKLIANLNMLLRDENVNVVKKAILTMTQL 127 (386)
T ss_dssp GGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGG-----------H--HHHHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHH-----------H--HHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 56777777777778888888888777766433221 1 23666777777777777777766655444
No 289
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=22.77 E-value=3.8e+02 Score=23.30 Aligned_cols=79 Identities=27% Similarity=0.343 Sum_probs=42.7
Q ss_pred HHHHHHHHHhHHHHHHHhhhHHHHHHHHHhhh----------hhhhhhhhhHHHHHHHHHHhhhhhhhhhhhhhHHhhhh
Q 007520 102 DESMRNLVTRSEFLEKENAHLELEVEKILGEL----------NHQKDQNNLKREKIVQLEISLKNSKQYEMENSTYQKAL 171 (600)
Q Consensus 102 ~~~~~~l~~~~~~~~~e~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l 171 (600)
.+-+.+|..+--.-.||...|+.|+.-+..-+ ..|.++-+.--+|...||-.||.--
T Consensus 45 qgKVDQlqKRn~~HQKEi~~Lrae~~~~QRn~~K~~~~Lkrn~~qQnQQSlDiRKLrELEADLKEKD------------- 111 (167)
T 4gkw_A 45 QGKVDQLQKRNVAHQKEIGKLRAELGTAQRNLEKADQLLKRNSQQQNQQSLDMRKLGELEADLKEKD------------- 111 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHTHHHHH-------------
T ss_pred HhhHHHHHHhccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhHHHhHhhhhHHHHHHHHhHHhhhh-------------
Confidence 34556666666666777777877776544333 2233333444455556666665411
Q ss_pred hhhhhhhHHHHHHHHHHhHhHHH
Q 007520 172 ADTTQLYEKKIAELNKKLEDEHA 194 (600)
Q Consensus 172 ~~~~~~~~~~~~~l~~~l~~e~~ 194 (600)
.-+...-.-|--|.|-|+||.-
T Consensus 112 -sMVe~LT~TiG~LrKELEdEkl 133 (167)
T 4gkw_A 112 -SMVESLTETIGILRKELENEKL 133 (167)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHHHHH
Confidence 1223333445556666776643
No 290
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=22.58 E-value=2.7e+02 Score=22.31 Aligned_cols=48 Identities=19% Similarity=0.138 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHhhhHHHHHHHHHhhhhh
Q 007520 88 YEFEKQLRESQISYDESMRNLVTRSEFLEKENAHLELEVEKILGELNH 135 (600)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~e~~~~~~~~~~~~~~~~~ 135 (600)
..+..+|++-..+--+.-..|-.+++.+..|+..|..+.++|+.-.++
T Consensus 31 k~lAE~RR~AL~eaL~EN~~Lh~~ie~l~eEi~~lk~en~eL~elae~ 78 (83)
T 1uii_A 31 KEVAEKRRKALYEALKENEKLHKEIEQKDNEIARLKKENKELAEVAEH 78 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666777777777888888888888888888888888887765443
No 291
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=22.49 E-value=2.9e+02 Score=21.90 Aligned_cols=26 Identities=15% Similarity=0.075 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007520 225 ELCVKLKETRQLHESAVYEVQTLKSE 250 (600)
Q Consensus 225 ~l~~~~~d~~~~~e~~~~el~~l~~~ 250 (600)
-++.++.++.++...+...+..++..
T Consensus 43 KL~~mi~~l~~E~~~l~~ni~~lk~K 68 (78)
T 3iv1_A 43 KLEEMVTRLDQEVAEVDKNIELLKKK 68 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444344433
No 292
>3vem_A Helicase protein MOM1; coiled-coil, hendecad, transcriptional gene silencing, siRNA nucleus, chromatin, transcription; 3.20A {Arabidopsis thaliana}
Probab=22.39 E-value=3.6e+02 Score=22.93 Aligned_cols=48 Identities=17% Similarity=0.110 Sum_probs=27.3
Q ss_pred HHHHHHHHhHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhh
Q 007520 22 LETQVDHLTAEIERKQKLRENDKCELEKLLRECQISYDEAKDNLVTQVELLTAKIEMQQKLR 83 (600)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (600)
|-+||++|--+.+--.|.+| +-.-.+-.||.. |++.++.+|.+..+..
T Consensus 37 L~~ELeRLr~~~d~~~K~HE---~kklqLkse~e~-----------E~ae~k~KYD~~lqe~ 84 (115)
T 3vem_A 37 FLHELEKLRRESENSKKTFE---EKKSILKAELER-----------KMAEVQAEFRRKFHEV 84 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH-----------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH-----------HHHHHHHHHHHHHHHH
Confidence 55677777777777777776 322223334444 4555555555555544
No 293
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=22.37 E-value=1.2e+02 Score=27.74 Aligned_cols=67 Identities=10% Similarity=0.025 Sum_probs=47.6
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHhhcC--chhHHHHHHcccHHHHHHhhhc-----CChHHHHHHHHHHHh
Q 007520 523 ALEWLIANSKTNSASTRRHVELALCHLAQN--EDNARDFISRGGAKELVQISIE-----SSREDIRNLAKKTMK 589 (600)
Q Consensus 523 ~l~~Lv~Ll~s~~~~v~~~Aa~aL~nLa~~--~~~~~~lv~~G~l~~Lv~ll~~-----~~~~~ir~~A~~~L~ 589 (600)
++..|..-+.++++.++..|...|-.|..+ ......+.....+..|+.++.. .....+++.+..++.
T Consensus 51 A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~ 124 (171)
T 1juq_A 51 AVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLY 124 (171)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHH
Confidence 455666677888999999999988888765 3455666677788889998863 123567777665553
No 294
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5
Probab=22.34 E-value=4.3e+02 Score=30.15 Aligned_cols=113 Identities=18% Similarity=0.145 Sum_probs=67.6
Q ss_pred hHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcC-CccHHHHHHhCchhhhHhhhcc--CCCHHHHHHHHHHHH
Q 007520 380 NQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMN-EMNQGLIMSRGGGQLLAKTASK--TDDPQTLRMVAGALA 456 (600)
Q Consensus 380 ~~~~iv~~G~I~~Lv~lL~~~~~~~v~~~Al~aL~NLa~~-~~~r~~I~~~G~I~~Lv~lL~~--~~~~~v~~~Aa~aL~ 456 (600)
.+..+|+. ..|.+...+- +.+..+...+..+|.+||.- |.|...|+. +++..+...|.. -..+--...++.+|.
T Consensus 332 ~~~~fV~~-l~p~~~~g~f-SK~~~~~~~~~~~l~~La~l~P~~~~lVlP-~vL~r~y~sLe~~~l~e~Hrl~~aL~~l~ 408 (799)
T 1vsy_4 332 CHEEIVEI-FLNIISLGSQ-NKNPDIANYYISCFAYLLELDPSNAYLIYD-KILIDLYDTLADQFINSRHRIISSLKQFT 408 (799)
T ss_dssp HHHHHHHH-HHHHHHHHHT-CSSHHHHHHHHHHHHHHHHTCCTTHHHHHH-HHHHHHHHHHTTTTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHH-HHHHHHHHhC-cCCcchHHHHHHHHHHHHhcCCCccceehH-HHHHHHHHHhccccccchhHHHHHHHHHH
Confidence 45667775 3444444444 67888889999999999987 545555544 466666666643 244443444455554
Q ss_pred HHh----CCchhHHHHHHcChHHHHHHH----HcCCCHHHHHHHHHHHHHhhc
Q 007520 457 NLC----GNEKLHTMLEEDGAIKALLAM----VRSGNIDVIAQVARGLANFAK 501 (600)
Q Consensus 457 nLa----~~~e~r~~i~~~G~i~~Lv~l----L~s~~~~v~~~A~~aL~nLa~ 501 (600)
.++ ..+..+. -+..++.+ ++..|+.-...+...+..++.
T Consensus 409 ~~~r~lv~~~~yr~------hl~~lL~l~LpgID~ND~~KT~~tl~fi~~i~s 455 (799)
T 1vsy_4 409 RVIRFIVMDKLYRV------HITNVLSMLVSKLDMNDTNLTSNLINGIVSIAA 455 (799)
T ss_dssp TTHHHHTTSTTGGG------HHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCcccHH------HHHHHHHHHhccCCcccHHHHHHHHHHHHHHHH
Confidence 443 3333332 33333333 356777767777777777765
No 295
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=22.21 E-value=1.9e+02 Score=28.22 Aligned_cols=64 Identities=17% Similarity=0.211 Sum_probs=0.0
Q ss_pred hHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchhhhhcchhhHHHHHhCCcHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 007520 473 AIKALLAMVRSGNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSKTNSASTRRHVELALCHL 549 (600)
Q Consensus 473 ~i~~Lv~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~q~~~~~r~~l~e~g~l~~Lv~Ll~s~~~~v~~~Aa~aL~nL 549 (600)
.++.++.+..+.+..++..+++.|.-.+...+..... +++.|..++.++++.|...+..+..++
T Consensus 54 ~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k~~l~~~-------------~l~~L~~Ll~d~d~~V~K~~I~~~~~i 117 (257)
T 3gs3_A 54 FLESVLSLAHDSNMEVRKQVVAFVEQVCKVKVELLPH-------------VINVVSMLLRDNSAQVIKRVIQACGSI 117 (257)
T ss_dssp HHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGHHH-------------HHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHcCCCHHHHHHHHHHHHHH
No 296
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=22.18 E-value=3.1e+02 Score=22.03 Aligned_cols=32 Identities=13% Similarity=0.042 Sum_probs=21.6
Q ss_pred hhhhhHHHHHHHHHHhHhHHHhhhhhHHHHHH
Q 007520 174 TTQLYEKKIAELNKKLEDEHACFEGAVEQLDM 205 (600)
Q Consensus 174 ~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~~~ 205 (600)
.....++++..|+..++.+-..+...+.....
T Consensus 15 Em~~~eeel~~lke~l~k~e~~rkele~~~~~ 46 (89)
T 3bas_A 15 EMKEQLKQMDKMKEDLAKTERIKKELEEQNVT 46 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456777888888887776666666665555
No 297
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=21.92 E-value=1.5e+02 Score=21.70 Aligned_cols=34 Identities=26% Similarity=0.315 Sum_probs=24.4
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007520 218 QGQKEVHELCVKLKETRQLHESAVYEVQTLKSEY 251 (600)
Q Consensus 218 ~~~~e~~~l~~~~~d~~~~~e~~~~el~~l~~~~ 251 (600)
+...|.+.|+...++++..++.+..++..+++++
T Consensus 16 p~~~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l 49 (53)
T 2yy0_A 16 PENPEIELLRLELAEMKEKYEAIVEENKKLKAKL 49 (53)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456788888888888888888666655555443
No 298
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=21.90 E-value=7.2e+02 Score=26.25 Aligned_cols=23 Identities=13% Similarity=0.276 Sum_probs=12.7
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHH
Q 007520 55 QISYDEAKDNLVTQVELLTAKIE 77 (600)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~ 77 (600)
|..+.+.++++.+-|+.|+-.+.
T Consensus 53 qglL~kqerdv~~rI~kLkn~L~ 75 (491)
T 1m1j_A 53 QGIIDDTDQNYSQRIDNIRQQLA 75 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHhhhhHHHHHHHHHHHHH
Confidence 44556666666655555554443
No 299
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=21.60 E-value=3.1e+02 Score=22.10 Aligned_cols=29 Identities=28% Similarity=0.488 Sum_probs=19.8
Q ss_pred HHHHHhHHHHHHHhhhHHHHHHHHHhhhh
Q 007520 106 RNLVTRSEFLEKENAHLELEVEKILGELN 134 (600)
Q Consensus 106 ~~l~~~~~~~~~e~~~~~~~~~~~~~~~~ 134 (600)
.+|..+++.|+.+...|+.++..+...+.
T Consensus 4 ~~L~~~i~~L~~q~~~L~~ei~~~~a~L~ 32 (85)
T 3viq_B 4 SQLESRVHLLEQQKEQLESSLQDALAKLK 32 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 35666666777777777777777766664
No 300
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=21.51 E-value=2.1e+02 Score=20.80 Aligned_cols=32 Identities=19% Similarity=0.275 Sum_probs=21.4
Q ss_pred HHHHHHHHHhHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHhh
Q 007520 21 KLETQVDHLTAEIERKQKLRENDKCELEKLLRECQISYDEAKD 63 (600)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 63 (600)
-|..+++.|.+-|+|-..... +|+..|.....
T Consensus 13 ~l~~~l~~L~~rN~rL~~~L~-----------~AR~el~~Lke 44 (51)
T 3m91_A 13 QLEARIDSLAARNSKLMETLK-----------EARQQLLALRE 44 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHH
Confidence 466777777777777666665 66666665555
No 301
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=21.44 E-value=2e+02 Score=19.69 Aligned_cols=21 Identities=38% Similarity=0.445 Sum_probs=12.6
Q ss_pred HhHHHHHHHHHHhHHHHHHHH
Q 007520 18 LCRKLETQVDHLTAEIERKQK 38 (600)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~ 38 (600)
|.-.||.++-.|.-|||--+|
T Consensus 4 lvaqlenevaslenenetlkk 24 (49)
T 3he5_A 4 LVAQLENEVASLENENETLKK 24 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcccHHHHH
Confidence 345567777766666665443
No 302
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=21.40 E-value=3.2e+02 Score=21.86 Aligned_cols=36 Identities=19% Similarity=0.226 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 007520 223 VHELCVKLKETRQLHESAVYEVQTLKSEYKNLLEEK 258 (600)
Q Consensus 223 ~~~l~~~~~d~~~~~e~~~~el~~l~~~~~~l~~~~ 258 (600)
+++|+.-|..++..+..+.-|+..|+.+...+.++.
T Consensus 8 leqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~ 43 (81)
T 2jee_A 8 FEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEV 43 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777777777777777667666776655444433
No 303
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=21.21 E-value=3.4e+02 Score=22.24 Aligned_cols=36 Identities=22% Similarity=0.227 Sum_probs=20.0
Q ss_pred hhhHHHHHHHHHhHHHHHHHhhhHHHHHHHHHhhhh
Q 007520 99 ISYDESMRNLVTRSEFLEKENAHLELEVEKILGELN 134 (600)
Q Consensus 99 ~~~~~~~~~l~~~~~~~~~e~~~~~~~~~~~~~~~~ 134 (600)
..|...+..+..+++.|..+...+..+++.+...+.
T Consensus 67 ~~~~~~l~~l~~~i~~l~~~i~~l~~~~~~l~~~~~ 102 (112)
T 1l8d_A 67 SKYHLDLNNSKNTLAKLIDRKSELERELRRIDMEIK 102 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555665555555666555555554443
No 304
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=21.18 E-value=1e+02 Score=33.93 Aligned_cols=144 Identities=17% Similarity=0.235 Sum_probs=0.0
Q ss_pred HHHhHHHHHHHHhh--------hccHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHH
Q 007520 27 DHLTAEIERKQKLR--------ENDKCELEKLLRECQISYDEAKDNLVTQVELLTAKIEMQQKLRENDKYEFEKQLRESQ 98 (600)
Q Consensus 27 ~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (600)
.+..-+.||++-++ |.++.|+++++.+.+.....+...+. +-+.--..|+++.+.. .+-...|.+-+
T Consensus 312 ~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~l~e~~~~~----~~e~~~l~~~~ 386 (575)
T 2i1j_A 312 EKLAKQAQREKLQLEIAARERAEKKQQEYQDRLRQMQEEMERSQANLL-EAQDMILRLEEQLRQL----QAAKEELEQRQ 386 (575)
T ss_dssp HHHHHHHHHTTCCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHC--------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHH----HHHHHHHHHHH
Q ss_pred hhhHHHHHHHHHhHHHHHHHhhhHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHhhhhhhhhhhhhhHHhhhhhhhh
Q 007520 99 ISYDESMRNLVTRSEFLEKENAHLELEVEKILGELNHQKDQNNLKREKIVQLEISLKNSKQYEMENSTYQKALADTT 175 (600)
Q Consensus 99 ~~~~~~~~~l~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~ 175 (600)
..-.+.+..|....+.-++|+.+|+.++.+....+..........-....++..++..-+.-+-+...-...+..+.
T Consensus 387 ~~~e~~~~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~a~~~~~~~~~~l~~~~~~~ 463 (575)
T 2i1j_A 387 NELQAMMQRLEETKNMEAAERQKLEDEIRAKQEEVSRIQQEVELKDSETRRLQEEVEDARRKQDEAAAALLAATTPQ 463 (575)
T ss_dssp -------------------------------------------------------CHHHHHHHHHHHHHHHTTSCCG
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
No 305
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=20.92 E-value=3.2e+02 Score=21.69 Aligned_cols=37 Identities=22% Similarity=0.354 Sum_probs=22.9
Q ss_pred hhhhhhhhhhHHHHHHHHHHhHhHHHhhhhhHHHHHH
Q 007520 169 KALADTTQLYEKKIAELNKKLEDEHACFEGAVEQLDM 205 (600)
Q Consensus 169 ~~l~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~~~ 205 (600)
+.|.+.....|.+++--..+|+++...++.--++++.
T Consensus 8 ~eLq~e~~~~E~QL~~A~QKLkdA~~~~e~DPDevNK 44 (78)
T 2ic6_A 8 KEVQDNITLHEQRLVTTRQKLKDAERAVELDPDDVNK 44 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHH
Confidence 3455566666777777777777666655555555555
No 306
>2xpp_A IWS1, ECU08_0440; transcription, elongation, histone chaperone, RNA polymerase mRNA export; 1.74A {Encephalitozoon cuniculi} PDB: 2xpo_A 2xpn_A 2xpl_A
Probab=20.86 E-value=2.8e+02 Score=24.62 Aligned_cols=74 Identities=15% Similarity=0.193 Sum_probs=52.1
Q ss_pred hhHHHHHhCCcHHHHHHhhcC------CCHHHHHHHHHHHHHhhcCchhHHHHHHcccHHHHHHhhhcCC-hHHHHHHHH
Q 007520 513 KGRSHLMEDSALEWLIANSKT------NSASTRRHVELALCHLAQNEDNARDFISRGGAKELVQISIESS-REDIRNLAK 585 (600)
Q Consensus 513 ~~r~~l~e~g~l~~Lv~Ll~s------~~~~v~~~Aa~aL~nLa~~~~~~~~lv~~G~l~~Lv~ll~~~~-~~~ir~~A~ 585 (600)
..+..|++.|++..+-..+.. ++..|+.....+|..|- -....+.++|.-..++-+-+++. .+.++..|.
T Consensus 52 ~l~~~~ld~giL~~l~~WL~PLpDgsLP~~~Ir~~lL~~L~~lP---I~~e~Lk~SglGkvv~~l~k~~~et~~nk~la~ 128 (145)
T 2xpp_A 52 ALQESLLDEGILDEIKGWLEPLPDKSMPNIKIRKRLLDVLKTMK---IHKEHLVTSGVGKIVYFYSINPKESKEVRASAK 128 (145)
T ss_dssp TTHHHHHHTTHHHHHHHHHSCCTTSCCCCHHHHHHHHHHHHTSC---CCHHHHHHHCHHHHHHHHHHCTTSCHHHHHHHH
T ss_pred HHHHHHHHcCHHHHHHHHhCcCCCCCCCCHHHHHHHHHHHHHCC---CCHHHhhcCCCCcchhhhhcCCccCHHHHHHHH
Confidence 356678899999988887654 36789999999998883 33567777766555555554443 346888888
Q ss_pred HHHh
Q 007520 586 KTMK 589 (600)
Q Consensus 586 ~~L~ 589 (600)
.++.
T Consensus 129 ~Li~ 132 (145)
T 2xpp_A 129 ALVQ 132 (145)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7664
No 307
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=20.82 E-value=5.1e+02 Score=24.06 Aligned_cols=138 Identities=11% Similarity=-0.031 Sum_probs=0.0
Q ss_pred HHHHHhhCCcchHHHHHHcCCHHHHHHHHcc-----CCCHHHHHHHHHHHHHhhcCCccHHHHHHhCchhhhHhhhccCC
Q 007520 369 KVVANLAAEDINQEKIVEEGGLDALLLLLRT-----SQNTTILRVASGAIANLAMNEMNQGLIMSRGGGQLLAKTASKTD 443 (600)
Q Consensus 369 ~aL~nLa~~~~~~~~iv~~G~I~~Lv~lL~~-----~~~~~v~~~Al~aL~NLa~~~~~r~~I~~~G~I~~Lv~lL~~~~ 443 (600)
.+|..|..+++.. -.+|.++.++.. ..+.......+.....|..|+...-...=.-.+|+++.++-...
T Consensus 27 ~aL~sL~~D~gL~------~LlPyf~~fI~~~v~~nl~~l~~L~~lm~~~~ALl~N~~l~lepYlH~LipsvLtCll~k~ 100 (196)
T 4atg_A 27 IAIECLEKESGLQ------QLVPYFIQHISELILKSFKEAEVLKTCIALYFSLIKNKHVFIDPYLHQILPSLLTCVIGKS 100 (196)
T ss_dssp HHHHHHHHCSSCT------TTHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHCTTCCCGGGHHHHHHHHHHHHHCTT
T ss_pred HHHHHHhcCCChh------hhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHhcc
Q ss_pred CHH--HHHHHHHHHHHHh-----CCchhHHHHHHcChHHHHHHHHc--CCCHHHHHHHHHHHHHhhcCCchhhhhcchhh
Q 007520 444 DPQ--TLRMVAGALANLC-----GNEKLHTMLEEDGAIKALLAMVR--SGNIDVIAQVARGLANFAKCESRAIVQGQRKG 514 (600)
Q Consensus 444 ~~~--v~~~Aa~aL~nLa-----~~~e~r~~i~~~G~i~~Lv~lL~--s~~~~v~~~A~~aL~nLa~~~~~~~~q~~~~~ 514 (600)
-.. ++..|+..|..+| .++..+..+.. .+...+. ..+......|..+|..|...
T Consensus 101 l~~~~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~-----tl~k~l~dp~~~l~t~YGAi~GL~~lG~~------------ 163 (196)
T 4atg_A 101 IVDDDVRKMSADIVKYIYDTYSRSYKTLAPRVLK-----TLKGVWMDPNRSEDSQYGALYCLSILSKN------------ 163 (196)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHTTTSTTHHHHHHH-----HHHHHHTCTTSCHHHHHHHHHHHHHHCHH------------
T ss_pred cCHHHHHHHHHHHHHHHHHHhCccCchHHHHHHH-----HHHHHHcCCCCChHHHHHHHHHHHHhHHH------------
Q ss_pred HHHHHhCCcHHHHHHhhc
Q 007520 515 RSHLMEDSALEWLIANSK 532 (600)
Q Consensus 515 r~~l~e~g~l~~Lv~Ll~ 532 (600)
.++.-.+|.+-.+.+
T Consensus 164 ---~vr~~llP~l~~~~~ 178 (196)
T 4atg_A 164 ---VVNTVIREHAEEYKR 178 (196)
T ss_dssp ---HHHTHHHHHHHHHHH
T ss_pred ---HHHHhhhcCHHHHHH
No 308
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=20.76 E-value=3.5e+02 Score=22.12 Aligned_cols=92 Identities=16% Similarity=0.175 Sum_probs=0.0
Q ss_pred HHHHHHHHhHHHHHHHhhhHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHhhhhhhhhhhhhhHHhhhhhhhhhhhHHHH
Q 007520 103 ESMRNLVTRSEFLEKENAHLELEVEKILGELNHQKDQNNLKREKIVQLEISLKNSKQYEMENSTYQKALADTTQLYEKKI 182 (600)
Q Consensus 103 ~~~~~l~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~ 182 (600)
+.+..|...+..|..|-..|..|+..+.++ .......+..++.+.....+.+..-..-.+.+.-....|..+.
T Consensus 4 ~~~~~l~~eL~~l~~eE~~L~~eL~~lEke-------~~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~ql~e~~dE~ 76 (96)
T 3q8t_A 4 SDSEQLQRELKELALEEERLIQELEDVEKN-------RKVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQLELDDEL 76 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHhHhHHHhhhhhHHHHHHHHH
Q 007520 183 AELNKKLEDEHACFEGAVEQLDMVKK 208 (600)
Q Consensus 183 ~~l~~~l~~e~~~~~~~~~~~~~~~~ 208 (600)
..|.+++. -+.-+++.|++
T Consensus 77 ~Sl~~q~~-------~~~~qLdkL~K 95 (96)
T 3q8t_A 77 KSVENQMR-------YAQMQLDKLKK 95 (96)
T ss_dssp HHHHHHHH-------HHHHHHHHHHT
T ss_pred HHHHHHHH-------HHHHHHHHhhc
No 309
>3nfq_A Transcription factor IWS1; SPN1, RNA polymerase II; 1.85A {Saccharomyces cerevisiae} PDB: 3o8z_A 3oak_A
Probab=20.55 E-value=4.9e+02 Score=23.72 Aligned_cols=82 Identities=12% Similarity=0.175 Sum_probs=60.6
Q ss_pred HhCCchhHHHHHHcChHHHHHHHHcC------CCHHHHHHHHHHHHHhhcCCchhhhhcchhhHHHHHhCCcHHHHHHhh
Q 007520 458 LCGNEKLHTMLEEDGAIKALLAMVRS------GNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANS 531 (600)
Q Consensus 458 La~~~e~r~~i~~~G~i~~Lv~lL~s------~~~~v~~~A~~aL~nLa~~~~~~~~q~~~~~r~~l~e~g~l~~Lv~Ll 531 (600)
.......+..|++.|++..+-..|.. ++..++...+.+|.+|... ++.+...|.-..++.+.
T Consensus 62 ~L~k~~L~~~~ld~giL~~l~~WLePLpDgSLP~~~Ir~~lL~~L~~lPI~------------~e~Lk~SglGkvV~~l~ 129 (170)
T 3nfq_A 62 VLSKANLADTILDNNLLQSVRIWLEPLPDGSLPSFEIQKSLFAALNDLPVK------------TEHLKESGLGRVVIFYT 129 (170)
T ss_dssp HHTCGGGHHHHHHTTHHHHHHHHHSCCTTSCCCCHHHHHHHHHHHHTSCCC------------HHHHHHHSHHHHHHHHH
T ss_pred HHhHHHHHHHHHHcchHHHHHHHhCcCCCCCCCcHHHHHHHHHHHHHCCCC------------HHHHhhCCCCceeeehh
Confidence 34556788899999999999999852 5678999999999998632 34466665555555554
Q ss_pred cC--CCHHHHHHHHHHHHHhhc
Q 007520 532 KT--NSASTRRHVELALCHLAQ 551 (600)
Q Consensus 532 ~s--~~~~v~~~Aa~aL~nLa~ 551 (600)
++ ..+.++..|...+...+.
T Consensus 130 k~~~et~~nkrla~~Li~~WsR 151 (170)
T 3nfq_A 130 KSKRVEAQLARLAEKLIAEWTR 151 (170)
T ss_dssp HCTTSCHHHHHHHHHHHHHHTC
T ss_pred cCCcccHHHHHHHHHHHHHHHH
Confidence 44 457888888888887764
Done!