BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007521
(600 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3M72|A Chain A, Crystal Structure Of Plant Slac1 Homolog Teha
Length = 314
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 69/283 (24%), Positives = 116/283 (40%), Gaps = 19/283 (6%)
Query: 217 FGMCLGVSSQAILWKTIATS-PSTKFLHIRPEINTVLWFXXXXXXXXXXXXYLMKVLLYF 275
FG+ LG+++ ++ W + P+ + ++ VL Y K+ YF
Sbjct: 14 FGIPLGLAALSLAWFHLENLFPAARM------VSDVLGIVASAVWILFILMYAYKLRYYF 67
Query: 276 EAVRREYYHPIRVNFF-FAPWVALLF--LALGVPPSIHEKLPEWLWYVLMTPILCLELKI 332
E VR EY+ P+R +F P +L + P I E L +W + +L L++
Sbjct: 68 EEVRAEYHSPVRFSFIALIPITTMLVGDILYRWNPLIAEVL---IWIGTIGQLLFSTLRV 124
Query: 333 YGQWMSGGQRRLSKVANPSNHL-AVVGNFVGALLGATMGIKEGPILFFAIGLAHYTVLFV 391
W G + K +PS +L AV NF A A +G + LFF G+ + +
Sbjct: 125 SELWQGGVFEQ--KSTHPSFYLPAVAANFTSASSLALLGYHDLGYLFFGAGMIAWIIFEP 182
Query: 392 TLYQRLPTNETLPKELHPVFFLFVAAPSVASMAWAKM-QGSFNYGSRIAYFIALFLYFSL 450
L Q L + P + + +A P V A+ + G + ++I + F L
Sbjct: 183 VLLQHLRISSLEP-QFRATMGIVLAPPFVCVSAYLSINHGEVDTLAKILWGYGFLQLFFL 241
Query: 451 AVRINFFRGFKFSLAWWAYTFPMTGAA-IATIRYSNEVTSGVT 492
+ ++ WA++FP+ A AT Y V GV+
Sbjct: 242 LRLFPWIVEKGLNIGLWAFSFPLASMANSATAFYHGNVLQGVS 284
>pdb|3M73|A Chain A, Crystal Structure Of Plant Slac1 Homolog Teha
Length = 314
Score = 37.4 bits (85), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 82/194 (42%), Gaps = 16/194 (8%)
Query: 217 FGMCLGVSSQAILWKTIATS-PSTKFLHIRPEINTVLWFXXXXXXXXXXXXYLMKVLLYF 275
FG+ LG+++ ++ W + P+ + ++ VL Y K+ YF
Sbjct: 14 FGIPLGLAALSLAWFHLENLFPAARM------VSDVLGIVASAVWILFILMYAYKLRYYF 67
Query: 276 EAVRREYYHPIRVNFF-FAPWVALLF--LALGVPPSIHEKLPEWLWYVLMTPILCLELKI 332
E VR EY+ P+R +F P +L + P I E L +W + +L L++
Sbjct: 68 EEVRAEYHSPVRFSFIALIPITTMLVGDILYRWNPLIAEVL---IWIGTIGQLLFSTLRV 124
Query: 333 YGQWMSGGQRRLSKVANPSNHL-AVVGNFVGALLGATMGIKEGPILFFAIGLAHYTVLFV 391
W G + K +PS +L AV NF A A +G + LFF G+ + +
Sbjct: 125 SELWQGGVFEQ--KSTHPSFYLPAVAANFTSASSLALLGYHDLGYLFFGAGMIAWIIFEP 182
Query: 392 TLYQRLPTNETLPK 405
L Q L + P+
Sbjct: 183 VLLQHLRISSLEPQ 196
>pdb|3M77|A Chain A, Crystal Structure Of Plant Slac1 Homolog Teha
Length = 314
Score = 37.4 bits (85), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 63/143 (44%), Gaps = 9/143 (6%)
Query: 267 YLMKVLLYFEAVRREYYHPIRVNFF-FAPWVALLF--LALGVPPSIHEKLPEWLWYVLMT 323
Y K+ YFE VR EY+ P+R +F P +L + P I E L +W +
Sbjct: 59 YAYKLRYYFEEVRAEYHSPVRFSFIALIPITTMLVGDILYRWNPLIAEVL---IWIGTIG 115
Query: 324 PILCLELKIYGQWMSGGQRRLSKVANPSNHL-AVVGNFVGALLGATMGIKEGPILFFAIG 382
+L L++ W G + K +PS +L AV NF A A +G + LFF G
Sbjct: 116 QLLFSTLRVSELWQGGVFEQ--KSTHPSFYLPAVAANFTSASSLALLGYHDLGYLFFGAG 173
Query: 383 LAHYTVLFVTLYQRLPTNETLPK 405
+ + + L Q L + P+
Sbjct: 174 MIAWIIFEPVLLQHLRISSLEPQ 196
>pdb|3M75|A Chain A, Crystal Structure Of Plant Slac1 Homolog Teha
Length = 314
Score = 37.4 bits (85), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 82/194 (42%), Gaps = 16/194 (8%)
Query: 217 FGMCLGVSSQAILWKTIATS-PSTKFLHIRPEINTVLWFXXXXXXXXXXXXYLMKVLLYF 275
FG+ LG+++ ++ W + P+ + ++ VL Y K+ YF
Sbjct: 14 FGIPLGLAALSLAWFHLENLFPAARM------VSDVLGIVASAVWILFILMYAYKLRYYF 67
Query: 276 EAVRREYYHPIRVNFF-FAPWVALLF--LALGVPPSIHEKLPEWLWYVLMTPILCLELKI 332
E VR EY+ P+R +F P +L + P I E L +W + +L L++
Sbjct: 68 EEVRAEYHSPVRFSFIALIPITTMLVGDILYRWNPLIAEVL---IWIGTIGQLLFSTLRV 124
Query: 333 YGQWMSGGQRRLSKVANPSNHL-AVVGNFVGALLGATMGIKEGPILFFAIGLAHYTVLFV 391
W G + K +PS +L AV NF A A +G + LFF G+ + +
Sbjct: 125 SELWQGGVFEQ--KSTHPSFYLPAVAANFTSASSLALLGYHDLGYLFFGAGMIAWIIFEP 182
Query: 392 TLYQRLPTNETLPK 405
L Q L + P+
Sbjct: 183 VLLQHLRISSLEPQ 196
>pdb|3M78|A Chain A, Crystal Structure Of Plant Slac1 Homolog Teha
Length = 314
Score = 37.4 bits (85), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 63/143 (44%), Gaps = 9/143 (6%)
Query: 267 YLMKVLLYFEAVRREYYHPIRVNFF-FAPWVALLF--LALGVPPSIHEKLPEWLWYVLMT 323
Y K+ YFE VR EY+ P+R +F P +L + P I E L +W +
Sbjct: 59 YAYKLRYYFEEVRAEYHSPVRFSFIALIPITTMLVGDILYRWNPLIAEVL---IWIGTIG 115
Query: 324 PILCLELKIYGQWMSGGQRRLSKVANPSNHL-AVVGNFVGALLGATMGIKEGPILFFAIG 382
+L L++ W G + K +PS +L AV NF A A +G + LFF G
Sbjct: 116 QLLFSTLRVSELWQGGVFEQ--KSTHPSFYLPAVAANFTSASSLALLGYHDLGYLFFGAG 173
Query: 383 LAHYTVLFVTLYQRLPTNETLPK 405
+ + + L Q L + P+
Sbjct: 174 MIAWIIFEPVLLQHLRISSLEPQ 196
>pdb|3M71|A Chain A, Crystal Structure Of Plant Slac1 Homolog Teha
pdb|3M7B|A Chain A, Crystal Structure Of Plant Slac1 Homolog Teha
pdb|3M7C|A Chain A, Crystal Structure Of Plant Slac1 Homolog Teha
pdb|3M7E|A Chain A, Crystal Structure Of Plant Slac1 Homolog Teha
Length = 314
Score = 37.4 bits (85), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 82/194 (42%), Gaps = 16/194 (8%)
Query: 217 FGMCLGVSSQAILWKTIATS-PSTKFLHIRPEINTVLWFXXXXXXXXXXXXYLMKVLLYF 275
FG+ LG+++ ++ W + P+ + ++ VL Y K+ YF
Sbjct: 14 FGIPLGLAALSLAWFHLENLFPAARM------VSDVLGIVASAVWILFILMYAYKLRYYF 67
Query: 276 EAVRREYYHPIRVNFF-FAPWVALLF--LALGVPPSIHEKLPEWLWYVLMTPILCLELKI 332
E VR EY+ P+R +F P +L + P I E L +W + +L L++
Sbjct: 68 EEVRAEYHSPVRFSFIALIPITTMLVGDILYRWNPLIAEVL---IWIGTIGQLLFSTLRV 124
Query: 333 YGQWMSGGQRRLSKVANPSNHL-AVVGNFVGALLGATMGIKEGPILFFAIGLAHYTVLFV 391
W G + K +PS +L AV NF A A +G + LFF G+ + +
Sbjct: 125 SELWQGGVFEQ--KSTHPSFYLPAVAANFTSASSLALLGYHDLGYLFFGAGMIAWIIFEP 182
Query: 392 TLYQRLPTNETLPK 405
L Q L + P+
Sbjct: 183 VLLQHLRISSLEPQ 196
>pdb|3M76|A Chain A, Crystal Structure Of Plant Slac1 Homolog Teha
Length = 314
Score = 37.0 bits (84), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 63/143 (44%), Gaps = 9/143 (6%)
Query: 267 YLMKVLLYFEAVRREYYHPIRVNFF-FAPWVALLF--LALGVPPSIHEKLPEWLWYVLMT 323
Y K+ YFE VR EY+ P+R +F P +L + P I E L +W +
Sbjct: 59 YAYKLRYYFEEVRAEYHSPVRFSFIALIPITTMLVGDILYRWNPLIAEVL---IWIGTIG 115
Query: 324 PILCLELKIYGQWMSGGQRRLSKVANPSNHL-AVVGNFVGALLGATMGIKEGPILFFAIG 382
+L L++ W G + K +PS +L AV NF A A +G + LFF G
Sbjct: 116 QLLFSTLRVSELWQGGVFEQ--KSTHPSFYLPAVAANFTSASSLALLGYHDLGYLFFGAG 173
Query: 383 LAHYTVLFVTLYQRLPTNETLPK 405
+ + + L Q L + P+
Sbjct: 174 MIAWIIFEPVLLQHLRISSLEPQ 196
>pdb|3M74|A Chain A, Crystal Structure Of Plant Slac1 Homolog Teha
Length = 314
Score = 37.0 bits (84), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 82/194 (42%), Gaps = 16/194 (8%)
Query: 217 FGMCLGVSSQAILWKTIATS-PSTKFLHIRPEINTVLWFXXXXXXXXXXXXYLMKVLLYF 275
FG+ LG+++ ++ W + P+ + ++ VL Y K+ YF
Sbjct: 14 FGIPLGLAALSLAWFHLENLFPAARM------VSDVLGIVASAVWILFILMYAYKLRYYF 67
Query: 276 EAVRREYYHPIRVNFF-FAPWVALLF--LALGVPPSIHEKLPEWLWYVLMTPILCLELKI 332
E VR EY+ P+R +F P +L + P I E L +W + +L L++
Sbjct: 68 EEVRAEYHSPVRFSFIALIPITTMLVGDILYRWNPLIAEVL---IWIGTIGQLLFSTLRV 124
Query: 333 YGQWMSGGQRRLSKVANPSNHL-AVVGNFVGALLGATMGIKEGPILFFAIGLAHYTVLFV 391
W G + K +PS +L AV NF A A +G + LFF G+ + +
Sbjct: 125 SELWQGGVFEQ--KSTHPSFYLPAVAANFTSASSLALLGYHDLGYLFFGAGMIAWIIFEP 182
Query: 392 TLYQRLPTNETLPK 405
L Q L + P+
Sbjct: 183 VLLQHLRISSLEPQ 196
>pdb|3M7L|A Chain A, Crystal Structure Of Plant Slac1 Homolog Teha
Length = 314
Score = 36.2 bits (82), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 51/199 (25%), Positives = 84/199 (42%), Gaps = 26/199 (13%)
Query: 217 FGMCLGVSSQAILWKTIATS-PSTKFLHIRPEINTVLWFXXXXXXXXXXXXYLMKVLLYF 275
FG+ LG+++ ++ W + P+ + ++ VL Y K+ YF
Sbjct: 14 FGIPLGLAALSLAWFHLENLFPAAR------XVSDVLGIVASAVWILFILXYAYKLRYYF 67
Query: 276 EAVRREYYHPIRVNFFFAPWVALLFLALGVP--------PSIHEKLPEWLWYVLMTPILC 327
E VR EY+ P+R +F +AL+ + + P I E L +W + +L
Sbjct: 68 EEVRAEYHSPVRFSF-----IALIPITTXLVGDILYRWNPLIAEVL---IWIGTIGQLLF 119
Query: 328 LELKIYGQWMSGGQRRLSKVANPSNHL-AVVGNFVGALLGATMGIKEGPILFFAIGLAHY 386
L++ W G + K +PS +L AV NF A A +G + LFF G +
Sbjct: 120 STLRVSELWQGGVFEQ--KSTHPSFYLPAVAANFTSASSLALLGYHDLGYLFFGAGXIAW 177
Query: 387 TVLFVTLYQRLPTNETLPK 405
+ L Q L + P+
Sbjct: 178 IIFEPVLLQHLRISSLEPQ 196
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.134 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,826,436
Number of Sequences: 62578
Number of extensions: 659561
Number of successful extensions: 1297
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1279
Number of HSP's gapped (non-prelim): 9
length of query: 600
length of database: 14,973,337
effective HSP length: 104
effective length of query: 496
effective length of database: 8,465,225
effective search space: 4198751600
effective search space used: 4198751600
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)