Query 007521
Match_columns 600
No_of_seqs 172 out of 979
Neff 5.2
Searched_HMMs 46136
Date Thu Mar 28 11:44:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007521.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007521hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK10764 potassium-tellurite e 100.0 5E-55 1.1E-59 457.8 33.5 312 208-528 5-318 (324)
2 TIGR00816 tdt C4-dicarboxylate 100.0 5.3E-50 1.2E-54 418.1 32.2 300 212-518 1-317 (320)
3 PF03595 SLAC1: Voltage-depend 100.0 4.5E-50 9.8E-55 417.5 31.5 301 210-516 1-330 (330)
4 COG1275 TehA Tellurite resista 100.0 1.6E-43 3.5E-48 371.4 30.7 311 208-525 5-321 (329)
5 PF03595 SLAC1: Voltage-depend 98.0 0.00064 1.4E-08 71.4 20.9 227 291-517 7-269 (330)
6 TIGR00816 tdt C4-dicarboxylate 97.7 0.0099 2.1E-07 62.8 22.4 223 291-514 5-251 (320)
7 COG1275 TehA Tellurite resista 97.4 0.021 4.6E-07 61.2 21.3 196 246-453 103-309 (329)
8 PRK10764 potassium-tellurite e 97.0 0.089 1.9E-06 56.0 20.7 213 217-453 84-304 (324)
9 PF13965 SID-1_RNA_chan: dsRNA 79.0 1.4E+02 0.003 34.9 18.7 107 316-428 396-505 (570)
10 PRK11281 hypothetical protein; 76.2 1.9E+02 0.004 36.6 19.7 21 274-294 523-543 (1113)
11 TIGR00807 malonate_madL malona 55.2 98 0.0021 29.1 8.9 37 460-496 60-97 (125)
12 PRK10929 putative mechanosensi 54.8 5.5E+02 0.012 32.6 19.9 22 273-294 500-521 (1109)
13 PRK10263 DNA translocase FtsK; 54.5 4.7E+02 0.01 33.8 17.2 26 375-400 73-100 (1355)
14 COG1966 CstA Carbon starvation 52.6 3.6E+02 0.0078 31.6 14.7 55 317-371 4-82 (575)
15 COG4956 Integral membrane prot 40.9 2.4E+02 0.0053 30.7 10.4 28 215-243 11-38 (356)
16 PF03817 MadL: Malonate transp 40.5 1.9E+02 0.0041 27.3 8.4 36 461-496 61-97 (125)
17 PF12576 DUF3754: Protein of u 39.0 1.5E+02 0.0033 28.0 8.0 79 193-282 45-123 (141)
18 PF03248 Rer1: Rer1 family; I 37.8 1.2E+02 0.0027 30.2 7.3 53 207-270 100-153 (176)
19 PRK12657 putative monovalent c 33.8 3.4E+02 0.0074 24.6 8.9 69 379-449 10-78 (100)
20 PF08229 SHR3_chaperone: ER me 30.9 94 0.002 31.5 5.3 46 215-263 63-108 (196)
21 PF06570 DUF1129: Protein of u 26.8 2.4E+02 0.0053 28.1 7.6 25 206-230 79-103 (206)
22 PRK09776 putative diguanylate 26.5 1.1E+03 0.025 28.7 14.6 20 376-395 137-156 (1092)
23 COG4325 Predicted membrane pro 25.5 4.9E+02 0.011 29.3 9.9 27 406-432 125-151 (464)
24 PF13722 DUF4161: C-terminal d 25.2 3.7E+02 0.008 25.3 7.9 37 245-284 3-39 (127)
25 PRK09776 putative diguanylate 24.9 1.2E+03 0.027 28.3 14.5 15 313-327 135-149 (1092)
26 PF12794 MscS_TM: Mechanosensi 22.7 9.9E+02 0.021 25.8 19.7 26 270-295 23-48 (340)
27 PRK07948 putative monovalent c 22.2 5.4E+02 0.012 22.6 9.4 65 382-448 8-72 (86)
28 COG5487 Small integral membran 21.8 2.1E+02 0.0046 23.1 4.6 36 214-264 11-46 (54)
29 PF04246 RseC_MucC: Positive r 20.9 1.7E+02 0.0036 27.1 4.8 29 350-378 73-101 (135)
30 PRK01021 lpxB lipid-A-disaccha 20.1 1.2E+03 0.027 27.6 12.4 44 319-362 12-55 (608)
No 1
>PRK10764 potassium-tellurite ethidium and proflavin transporter; Provisional
Probab=100.00 E-value=5e-55 Score=457.79 Aligned_cols=312 Identities=21% Similarity=0.339 Sum_probs=286.7
Q ss_pred cccccChhhHHHHHHHHHHHHHHHHcccCCCCcccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHhcCCCc
Q 007521 208 FLLRFSISSFGMCLGVSSQAILWKTIATSPSTKFLHIRPEINTVLWFISVALVISISLIYLMKVLLYFEAVRREYYHPIR 287 (600)
Q Consensus 208 ~L~~fP~swFgivMGtGgLAilw~~l~~~p~~~~L~~p~~I~~iL~~lalvLfivl~~lyllK~i~~p~~v~~El~hPv~ 287 (600)
+++++|++|||++||++|+|++|+.++. .++.++.++++++++++++|++++++|++|+++||+++++|++||++
T Consensus 5 ~~~~~p~~~f~~~mG~~gL~~~~~~~~~-----~~~~~~~i~~~~~~la~~l~~~l~~~~~~k~~~~p~~~~~el~hPv~ 79 (324)
T PRK10764 5 KVLPLPAGYFGIVLGLIGLGFAWRYAAQ-----LWPLPAWIGEALVALASIIWALLILAYLYKWIRFPESVLAELRHPVQ 79 (324)
T ss_pred ccCCCCHHHHHHHHHHHHHHHHHHHHHH-----HhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHcCcch
Confidence 4578999999999999999999998654 46677899999999999999999999999999999999999999999
Q ss_pred cccccHHHHHHHHHHHccCCchhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccCCcccccchhh-HHHhhhh
Q 007521 288 VNFFFAPWVALLFLALGVPPSIHEKLPEWLWYVLMTPILCLELKIYGQWMSGGQRRLSKVANPSNHLAVVGN-FVGALLG 366 (600)
Q Consensus 288 ~~Ff~T~~ma~~lLa~~v~~~~~~~La~vLW~igval~L~l~l~iy~~w~s~~~~~~~~~~nPSW~LPvVG~-iV~A~aG 366 (600)
++|++|++|++++++.+..++. ..++.++||+++++++++++.++++++.++ +..++++|+|+||+||. +|++.+|
T Consensus 80 ~~f~~t~~ms~~ll~~~~~~~~-~~~a~~lW~~g~~l~l~~~~~~~~~~~~~~--~~~~~~~PaW~ip~V~~~~v~~~a~ 156 (324)
T PRK10764 80 SSFVSLIPITTMLVAIGLVPYS-RPLAVVLFSFGVVGQLAFAAWRTAGLWRGG--HPEEATTPGLYLPTVANNFVSAMAL 156 (324)
T ss_pred hhhhhHHHHHHHHHHHHHHhhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--cccccCChhhhhccchhhhHHHhhc
Confidence 9999999999999998887765 468889999999999999988888777654 35788999999999965 7999999
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcchhhHHhhhhhHHHHHHHHHHhcC-hhHHHHHHHHHHHH
Q 007521 367 ATMGIKEGPILFFAIGLAHYTVLFVTLYQRLPTNETLPKELHPVFFLFVAAPSVASMAWAKMQGS-FNYGSRIAYFIALF 445 (600)
Q Consensus 367 a~lg~~eis~~~fgiGl~lylvLf~lil~RL~~~~~~P~~l~PtlfI~vAPpsv~alA~l~L~g~-~d~~a~iL~g~glF 445 (600)
+.+++.+.++++||+|+++|+++++++++|+++++.+|++++|++||.+||+|++++||+.+.++ .|.++.++|++|+|
T Consensus 157 ~~~~~~~~~~~~fg~G~~~~l~l~~i~~~Rl~~~~~lp~~~~P~l~I~lAP~~~~~~a~l~~~~~~~~~~~~~l~~~~l~ 236 (324)
T PRK10764 157 GALGYHDAGLLFLGAGVFSWLSLEPVILQRLRSSGELPTALRPSLGIQLAPAFVGCSAYLSVNGGEGDTLAKMLFGYGLL 236 (324)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhHHHHHHHHHHHcCcchhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999864 67888999999999
Q ss_pred HHHHHHHHHHhhhcCCcccceeeeecchhHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccC
Q 007521 446 LYFSLAVRINFFRGFKFSLAWWAYTFPMTGAAIATIRYSNEVTSGVTQALAVILSVISTLTVTALLVTTILHAFVLRDLF 525 (600)
Q Consensus 446 l~~llav~i~~~~k~~FslsWWAfTFPLga~AiATi~la~~~~s~~~~~La~il~ilatlv~~~vlv~Tl~~v~~~g~Lf 525 (600)
++++++...+++++.||+++|||||||++++++++.++++..++.++++++.+++++++++|.+++++|+++ +++|+++
T Consensus 237 ~~~~~l~~~~~~~~~~F~~swWAfTFPl~A~~~at~~l~~~~~~~~~~~la~~~~~~~~~~~~~v~~~tl~~-~~~g~l~ 315 (324)
T PRK10764 237 QLLFLLRLMPWILSQGFNASFWSFSFGVAALATTGLHLGHGSDNGFFHTLAVPLFIFANFIIALLLLRTLAL-LMQGKLL 315 (324)
T ss_pred HHHHHHHHHHHHcCCCCCccHHHHccHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCCcc
Confidence 987766656777789999999999999999999999999999999999999999999999999999999987 5899988
Q ss_pred CCc
Q 007521 526 PND 528 (600)
Q Consensus 526 p~d 528 (600)
+.+
T Consensus 316 ~~~ 318 (324)
T PRK10764 316 VRT 318 (324)
T ss_pred CCC
Confidence 665
No 2
>TIGR00816 tdt C4-dicarboxylate transporter/malic acid transport protein. spanners (TMSs).
Probab=100.00 E-value=5.3e-50 Score=418.09 Aligned_cols=300 Identities=20% Similarity=0.238 Sum_probs=263.1
Q ss_pred cChhhHHHHHHHHHHHHHHHHcccCCCCcccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHhcCCCccccc
Q 007521 212 FSISSFGMCLGVSSQAILWKTIATSPSTKFLHIRPEINTVLWFISVALVISISLIYLMKVLLYFEAVRREYYHPIRVNFF 291 (600)
Q Consensus 212 fP~swFgivMGtGgLAilw~~l~~~p~~~~L~~p~~I~~iL~~lalvLfivl~~lyllK~i~~p~~v~~El~hPv~~~Ff 291 (600)
|||+||+++||||++|++|+.++. +. ...+.++++++++++++|++++++|++|+++||+++++|++||++++|+
T Consensus 1 f~p~wF~~vMgtg~~s~~~~~~~~--~~---~~l~~i~~~l~~l~~~lf~~l~~~~~~r~~~~~~~~~~~l~~p~~~~f~ 75 (320)
T TIGR00816 1 FPWGWFAIVLGTGGLALASLSYSF--YL---PILKDLSDVLFILAIALFFLFTSCWLARLIRYPSNVLAELKHPVLSSFI 75 (320)
T ss_pred CCcHHHHHHHHHHHHHHHHHHhcc--cc---chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcCChhhhhh
Confidence 689999999999999999988654 22 3346899999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHccCCchhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccCCcccccchhhHHHhhhhhhhhh
Q 007521 292 FAPWVALLFLALGVPPSIHEKLPEWLWYVLMTPILCLELKIYGQWMSGGQRRLSKVANPSNHLAVVGNFVGALLGATMGI 371 (600)
Q Consensus 292 ~T~~ma~~lLa~~v~~~~~~~La~vLW~igval~L~l~l~iy~~w~s~~~~~~~~~~nPSW~LPvVG~iV~A~aGa~lg~ 371 (600)
+|++|++++++....++. ...+..+||+++++++++++.+++.++.++ ++..+++||+|+||+||+++++.+|+.++.
T Consensus 76 ~t~~m~~~~l~~~~~~~~-~~~~~~lw~~~~~l~l~~~~~~~~~~~~~~-~~~~~~~~paw~lp~V~~~v~~~~~~~l~~ 153 (320)
T TIGR00816 76 PLIPISTMLLGIDFIIWG-YPLALGLWYIGAIGQLLFSVIVPFYLFKNE-SIEIEHTHPGWYLPPVALIFISAAALAILP 153 (320)
T ss_pred hHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CcccccCCchhhhcccHHHHHHHHHHHhhc
Confidence 999999999988876554 346778999999999988887777777764 345688999999999999999999886642
Q ss_pred -h--hHH---HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcchhhHHhhhhhHHHHHHHHHHhcC--hhH-------HH
Q 007521 372 -K--EGP---ILFFAIGLAHYTVLFVTLYQRLPTNETLPKELHPVFFLFVAAPSVASMAWAKMQGS--FNY-------GS 436 (600)
Q Consensus 372 -~--eis---~~~fgiGl~lylvLf~lil~RL~~~~~~P~~l~PtlfI~vAPpsv~alA~l~L~g~--~d~-------~a 436 (600)
. +.. +++||+|+++|+++++++++|+..++.+|++.+|++||.+||+|++++|++.+.++ .+. ++
T Consensus 154 ~~~~~~~~~~~~~~g~G~~l~l~i~~~~~~Rl~~~~~~p~~~~P~~~I~~gP~~~~~~a~~~l~~~~~~~~~~~~~~~~a 233 (320)
T TIGR00816 154 YLTHELTVLFYFGWGAGFFLYLSLEAVLLLRLRLHGLLPSALRPTMFINLAPIGVGIVALINIVNHGEFITIKEPFLILA 233 (320)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchhhhhhheeccHHHHHHHHHHHhhccchhhhhhhHHHHH
Confidence 1 244 44599999999999999999999999999999999999999999999999996432 233 77
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh--cCCcccceeeeecchhHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 007521 437 RIAYFIALFLYFSLAVRINFFR--GFKFSLAWWAYTFPMTGAAIATIRYSNEVTSGVTQALAVILSVISTLTVTALLVTT 514 (600)
Q Consensus 437 ~iL~g~glFl~~llav~i~~~~--k~~FslsWWAfTFPLga~AiATi~la~~~~s~~~~~La~il~ilatlv~~~vlv~T 514 (600)
.++|++|+|++++......++. +.+|+++|||||||+|++++||+++++..++.+++.++.++.++++++|++++++|
T Consensus 234 ~~l~~~~~~~~~~~~~~~~~~~~~~~~F~~~wWA~tFPlg~~a~at~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~t 313 (320)
T TIGR00816 234 IILWGFGLWQLLFAIRLLLWYVKLKLPFAMGWWAFIFPLAAYANSTHLVYKGFDFKVFQYIGFGLYVFLNFFWAILLIRT 313 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCCCccHHHHcChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999876665554433 48999999999999999999999999999999999999999999999999999999
Q ss_pred HHHH
Q 007521 515 ILHA 518 (600)
Q Consensus 515 l~~v 518 (600)
++++
T Consensus 314 l~~~ 317 (320)
T TIGR00816 314 VNKL 317 (320)
T ss_pred HHHH
Confidence 9885
No 3
>PF03595 SLAC1: Voltage-dependent anion channel; InterPro: IPR004695 Two members of the Tellurite-Resistance/Dicarboxylate Transporter (TDT) family have been functionally characterised. One is the TehA protein of Escherichia coli which has been implicated in resistance to tellurite; the other is the Mae1 protein of Schizosaccharomyces pombe which functions in the uptake of malate and other dicarboxylates by a proton symport mechanism. These proteins exhibit 10 putative transmembrane a-helical spanners (TMSs).; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3M76_A 3M7C_A 3M7E_A 3M74_A 3M7B_A 3M71_A 3M72_A 3M77_A 3M7L_A 3M75_A ....
Probab=100.00 E-value=4.5e-50 Score=417.53 Aligned_cols=301 Identities=27% Similarity=0.453 Sum_probs=250.4
Q ss_pred cccChhhHHHHHHHHHHHHHHHHcccCCCCcccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHhcCCCccc
Q 007521 210 LRFSISSFGMCLGVSSQAILWKTIATSPSTKFLHIRPEINTVLWFISVALVISISLIYLMKVLLYFEAVRREYYHPIRVN 289 (600)
Q Consensus 210 ~~fP~swFgivMGtGgLAilw~~l~~~p~~~~L~~p~~I~~iL~~lalvLfivl~~lyllK~i~~p~~v~~El~hPv~~~ 289 (600)
||+|++||+++||||++|++|+.+++. .+.+..++.+++++++++|+++++++++|+++||+++++|++||++++
T Consensus 1 k~~~~~~f~~~mGtg~l~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~el~~p~~~~ 75 (330)
T PF03595_consen 1 KHFPPAWFGMVMGTGGLSNLLYLLPYH-----FGGLAILSEVLFILALILFLVLLVLYLLRWIRYPKAFKAELRHPVRSS 75 (330)
T ss_dssp --S-GGGGHHHHHHHHHHHHHHTTTTT-----STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHSTTGGG
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHh-----ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCCcccc
Confidence 689999999999999999999987552 344569999999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHHccCCch---hhhhHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccCCcccccchhhHHHhhhh
Q 007521 290 FFFAPWVALLFLALGVPPSI---HEKLPEWLWYVLMTPILCLELKIYGQWMSGGQRRLSKVANPSNHLAVVGNFVGALLG 366 (600)
Q Consensus 290 Ff~T~~ma~~lLa~~v~~~~---~~~La~vLW~igval~L~l~l~iy~~w~s~~~~~~~~~~nPSW~LPvVG~iV~A~aG 366 (600)
|++|++|++++++.....+. ...++.++||+++++++++.+.++..|+.++ ++..++++|+|+||+||+++++.+|
T Consensus 76 f~~t~~m~~~~l~~~~~~~~~~~~~~~~~~lw~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~p~w~lp~Vg~~v~~~~g 154 (330)
T PF03595_consen 76 FFPTFPMALMLLAAFISPYGGPWSPSLALVLWWIGVILHLVLSVIFVFRWFRKQ-PFKLEHINPSWFLPPVGIMVSAVAG 154 (330)
T ss_dssp GGGHHHHHHHHHHHHHTTT-----HHHHHHHHHHHHHHHHHHHHHHTGGGGG-S-SS-GGG--GGGHHHHTHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhheehhccC-cccccccceeeeecchhHHHHHHHH
Confidence 99999999999999887774 4678999999999999999998888888764 3456789999999999999999999
Q ss_pred hhhh----------hhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcchhhHHhhhhhHHHHHHHHHHhcC-----
Q 007521 367 ATMG----------IKEGPILFFAIGLAHYTVLFVTLYQRLPTNETLPKELHPVFFLFVAAPSVASMAWAKMQGS----- 431 (600)
Q Consensus 367 a~lg----------~~eis~~~fgiGl~lylvLf~lil~RL~~~~~~P~~l~PtlfI~vAPpsv~alA~l~L~g~----- 431 (600)
+.++ ..+.++++||+|+++|+++++++++|++.++.+|++++|++||++||+|++++|++.+++.
T Consensus 155 ~~l~~~~~~~~~~~~~~~~~~~~g~G~~l~l~~~~~~~~Rl~~~~~~~~~~~p~~~I~~gP~~~~~~a~~~l~~~~~~~~ 234 (330)
T PF03595_consen 155 ANLGPALPGAQALWIIVISYFLFGIGFFLYLILFALVLYRLIFHGLPPAALRPTLFIFLGPPGLSALAYLSLGKAAVAFP 234 (330)
T ss_dssp HHHTT----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHS---G-GGGGGGGGGGHHHHHHHHHHHHHT-------
T ss_pred HHhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccCCCeeeecchHHHHHHHHHHhcccccccc
Confidence 9887 5688999999999999999999999999999999999999999999999999999999842
Q ss_pred ---------hhHHHHHHHHHHHHHHHHHHHHHHhhhc--CCcccceeeeecchhHHHHHHHHHHHhhchhhHHHHHHHHH
Q 007521 432 ---------FNYGSRIAYFIALFLYFSLAVRINFFRG--FKFSLAWWAYTFPMTGAAIATIRYSNEVTSGVTQALAVILS 500 (600)
Q Consensus 432 ---------~d~~a~iL~g~glFl~~llav~i~~~~k--~~FslsWWAfTFPLga~AiATi~la~~~~s~~~~~La~il~ 500 (600)
.+.++.++|+++++++++.+....+..+ ++|+++|||||||++++++|+.++++..+++++++++.++.
T Consensus 235 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~F~~~~Wa~tFP~~~~a~at~~l~~~~~~~~~~~~~~~~~ 314 (330)
T PF03595_consen 235 PHGQILRGVADLFALLLWGFALWWFFLALLSLIRYLRRRLPFSPSWWAFTFPLGAFALATLKLAQYLGSPFFRVLGLILL 314 (330)
T ss_dssp ------TT---HHHHHHHHHHHHHHHHHHHHHHHHTTT-----GGGGGGHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHH
T ss_pred hhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCcchhHHhChHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 3457788999999998777666544333 69999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 007521 501 VISTLTVTALLVTTIL 516 (600)
Q Consensus 501 ilatlv~~~vlv~Tl~ 516 (600)
++++++|++++++|+|
T Consensus 315 ~~~~~~~~~v~~~tlr 330 (330)
T PF03595_consen 315 VLATLIWIYVLVRTLR 330 (330)
T ss_dssp HHHHHHHHH-------
T ss_pred HHHHHHHHHhhcccCC
Confidence 9999999999999975
No 4
>COG1275 TehA Tellurite resistance protein and related permeases [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.6e-43 Score=371.40 Aligned_cols=311 Identities=21% Similarity=0.305 Sum_probs=274.3
Q ss_pred cccccChhhHHHHHHHHHHHHHHHHcccCCCCcccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHhcCCCc
Q 007521 208 FLLRFSISSFGMCLGVSSQAILWKTIATSPSTKFLHIRPEINTVLWFISVALVISISLIYLMKVLLYFEAVRREYYHPIR 287 (600)
Q Consensus 208 ~L~~fP~swFgivMGtGgLAilw~~l~~~p~~~~L~~p~~I~~iL~~lalvLfivl~~lyllK~i~~p~~v~~El~hPv~ 287 (600)
+++++|++||+++||||++|++|+.++. .. ...+.++.+++.+++++|+++.+++++|+++|++.+++|++||+.
T Consensus 5 ~~~~~~~~~f~~~mg~~~~gl~~~~~~~--~~---~~l~~~s~vl~~~~~~i~~l~~~~~i~k~i~y~~~~~~~l~~pv~ 79 (329)
T COG1275 5 KIRNFPPSWFASVMGTGGLGLALGLFSF--SF---LLLRTLSYVLFYFALAIFFLLLIVWILKLIKYPNTVIADLNHPVV 79 (329)
T ss_pred ccccCCHHHHhhcccHHHHHHHHHHhhh--cc---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHcCcHH
Confidence 5788999999999999999999998754 22 234589999999999999999999999999999999999999999
Q ss_pred cccccHHHHHHHHHHHcc-CCchhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccCCcccccchhhHHHhhhh
Q 007521 288 VNFFFAPWVALLFLALGV-PPSIHEKLPEWLWYVLMTPILCLELKIYGQWMSGGQRRLSKVANPSNHLAVVGNFVGALLG 366 (600)
Q Consensus 288 ~~Ff~T~~ma~~lLa~~v-~~~~~~~La~vLW~igval~L~l~l~iy~~w~s~~~~~~~~~~nPSW~LPvVG~iV~A~aG 366 (600)
++|+++++|++++++..+ .++. ..++.++||+++++++.+.....+..+.++ ..+.++++|+|+||+||+.+++.++
T Consensus 80 ~sf~~t~~ia~~~~~~~~~~~~~-~~~~~~lW~~~~~~~l~f~~~~~y~~~~~~-~~~~~~~~Psw~lP~V~~~v~s~t~ 157 (329)
T COG1275 80 SSFVPTFPIATMLLSSYLLYPGL-PLLAYVLWWFGVALQLFFSAWFIYSLFRGK-KFELETITPSWFLPPVGIIVASLTA 157 (329)
T ss_pred HHHHHHHHHHHHHHHHHHhhccc-hHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcccccCccceeccccHHHHHHHHh
Confidence 999999999999998884 4443 578999999999999887775444444432 2356899999999999999999998
Q ss_pred hhhhh--hhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcchhhHHhhhhhHHHHHHHHHHhc--ChhHHHHHHHHH
Q 007521 367 ATMGI--KEGPILFFAIGLAHYTVLFVTLYQRLPTNETLPKELHPVFFLFVAAPSVASMAWAKMQG--SFNYGSRIAYFI 442 (600)
Q Consensus 367 a~lg~--~eis~~~fgiGl~lylvLf~lil~RL~~~~~~P~~l~PtlfI~vAPpsv~alA~l~L~g--~~d~~a~iL~g~ 442 (600)
..++. .+.++++++.|+..|+++++++++|+.+++.+|.+.+|+.||.+||+|++++++..+.. ..+.++.+++++
T Consensus 158 ~~~~~~~~~~~~~~~~~g~~~~l~l~~iv~~r~~~~~~lp~~~~p~i~i~laP~~~~~~~~~~~~~~~~~~~~~~il~g~ 237 (329)
T COG1275 158 SVLLGAYFVIGYVFFGAGFFSYLVLFPIVLYRLFTAGLLPPAARPTIFIQLAPIGLVGVGLLLIVNSGPSLTFVLILWGF 237 (329)
T ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCcccCCcchhhhccHHHHHHHHHHHhccCchHHHHHHHHHH
Confidence 77755 78899999999999999999999999999999999999999999999999999998864 467888999999
Q ss_pred HHHHHHHHHHHHHh-hhcCCcccceeeeecchhHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 007521 443 ALFLYFSLAVRINF-FRGFKFSLAWWAYTFPMTGAAIATIRYSNEVTSGVTQALAVILSVISTLTVTALLVTTILHAFVL 521 (600)
Q Consensus 443 glFl~~llav~i~~-~~k~~FslsWWAfTFPLga~AiATi~la~~~~s~~~~~La~il~ilatlv~~~vlv~Tl~~v~~~ 521 (600)
|++++++.+....+ +.+.+|+++|||||||++++++++.++++..+...++.++..+.+++++.|+.+++++...+..+
T Consensus 238 g~~~~~~~~~~~~~~~l~~~F~~s~wAftFP~~~~a~s~~~l~~~~~~~~~~~lg~~~~~~~~~~~~~~lv~~t~~~~~k 317 (329)
T COG1275 238 GLLFLFFALLLLLRVLLRLPFSPSWWAFTFPLVILATSALELGKSIGIGVFHYLGLILGTFLIFIWIVLLVAYTIRAIRK 317 (329)
T ss_pred HHHHHHHHHHHHHHHHhcCCCchhHHHHhhhHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999887777666 78899999999999999999999999999999999999999999999999999999944454566
Q ss_pred cccC
Q 007521 522 RDLF 525 (600)
Q Consensus 522 g~Lf 525 (600)
++.+
T Consensus 318 ~~~~ 321 (329)
T COG1275 318 GKFL 321 (329)
T ss_pred HHHh
Confidence 5544
No 5
>PF03595 SLAC1: Voltage-dependent anion channel; InterPro: IPR004695 Two members of the Tellurite-Resistance/Dicarboxylate Transporter (TDT) family have been functionally characterised. One is the TehA protein of Escherichia coli which has been implicated in resistance to tellurite; the other is the Mae1 protein of Schizosaccharomyces pombe which functions in the uptake of malate and other dicarboxylates by a proton symport mechanism. These proteins exhibit 10 putative transmembrane a-helical spanners (TMSs).; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3M76_A 3M7C_A 3M7E_A 3M74_A 3M7B_A 3M71_A 3M72_A 3M77_A 3M7L_A 3M75_A ....
Probab=98.02 E-value=0.00064 Score=71.41 Aligned_cols=227 Identities=17% Similarity=0.148 Sum_probs=139.2
Q ss_pred ccHHHHHHHHHHHccC-----CchhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccc--cccccccCCcccccch--hhHH
Q 007521 291 FFAPWVALLFLALGVP-----PSIHEKLPEWLWYVLMTPILCLELKIYGQWMSGGQ--RRLSKVANPSNHLAVV--GNFV 361 (600)
Q Consensus 291 f~T~~ma~~lLa~~v~-----~~~~~~La~vLW~igval~L~l~l~iy~~w~s~~~--~~~~~~~nPSW~LPvV--G~iV 361 (600)
+++..|++..++.... ......++.++|++++++.+++......++..+.+ +++.++..-+.+++.. +.++
T Consensus 7 ~f~~~mGtg~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~el~~p~~~~f~~t~~m~~~~ 86 (330)
T PF03595_consen 7 WFGMVMGTGGLSNLLYLLPYHFGGLAILSEVLFILALILFLVLLVLYLLRWIRYPKAFKAELRHPVRSSFFPTFPMALML 86 (330)
T ss_dssp GGHHHHHHHHHHHHHHTTTTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHSTTGGGGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCCcccchHHHHHHHHHH
Confidence 4567788887766542 11224688889988888877655544445554432 1122333444555443 4444
Q ss_pred Hhhhhhhhh---hhhHHHHHHHHHHHHHHHHHHHHHHHhhcCC-CCCCCcchhhHHhhhhhHHHHHHHHHHhcC------
Q 007521 362 GALLGATMG---IKEGPILFFAIGLAHYTVLFVTLYQRLPTNE-TLPKELHPVFFLFVAAPSVASMAWAKMQGS------ 431 (600)
Q Consensus 362 ~A~aGa~lg---~~eis~~~fgiGl~lylvLf~lil~RL~~~~-~~P~~l~PtlfI~vAPpsv~alA~l~L~g~------ 431 (600)
.+......+ ....+..+|++|.++.+++...++++...++ ...++..|+-+++.-+..+++.+...+.+.
T Consensus 87 l~~~~~~~~~~~~~~~~~~lw~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~w~lp~Vg~~v~~~~g~~l~~~~~~~~~ 166 (330)
T PF03595_consen 87 LAAFISPYGGPWSPSLALVLWWIGVILHLVLSVIFVFRWFRKQPFKLEHINPSWFLPPVGIMVSAVAGANLGPALPGAQA 166 (330)
T ss_dssp HHHHHTTT-----HHHHHHHHHHHHHHHHHHHHHHTGGGGG-SSS-GGG--GGGHHHHTHHHHHHHHHHHHTT-------
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhheehhccCcccccccceeeeecchhHHHHHHHHHHhhhccchhhH
Confidence 433333333 4467889999999999999888888887654 567789999999988888888888777642
Q ss_pred --hhHHHHHHHHHHHHHHHHHHHHH--H-hhh---cCCcccceeeeecchhHHHHHHHHHHHhhc---------hhhHHH
Q 007521 432 --FNYGSRIAYFIALFLYFSLAVRI--N-FFR---GFKFSLAWWAYTFPMTGAAIATIRYSNEVT---------SGVTQA 494 (600)
Q Consensus 432 --~d~~a~iL~g~glFl~~llav~i--~-~~~---k~~FslsWWAfTFPLga~AiATi~la~~~~---------s~~~~~ 494 (600)
.-..+.+++++|+++|+.+...+ + ..+ ...-.++.|=+.=|.+..+.|-..+++... ......
T Consensus 167 ~~~~~~~~~~~g~G~~l~l~~~~~~~~Rl~~~~~~~~~~~p~~~I~~gP~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~ 246 (330)
T PF03595_consen 167 LWIIVISYFLFGIGFFLYLILFALVLYRLIFHGLPPAALRPTLFIFLGPPGLSALAYLSLGKAAVAFPPHGQILRGVADL 246 (330)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHS---G-GGGGGGGGGGHHHHHHHHHHHHHT-------------TT---H
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccCCCeeeecchHHHHHHHHHHhcccccccchhhhccccHHHH
Confidence 22456678999999987554432 2 112 235788899999999999999888886410 134455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 007521 495 LAVILSVISTLTVTALLVTTILH 517 (600)
Q Consensus 495 La~il~ilatlv~~~vlv~Tl~~ 517 (600)
++.++..++.......+...++.
T Consensus 247 ~~~~l~~~~~~~~~~~~~~~~~~ 269 (330)
T PF03595_consen 247 FALLLWGFALWWFFLALLSLIRY 269 (330)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 66566655555555555555543
No 6
>TIGR00816 tdt C4-dicarboxylate transporter/malic acid transport protein. spanners (TMSs).
Probab=97.65 E-value=0.0099 Score=62.80 Aligned_cols=223 Identities=17% Similarity=0.115 Sum_probs=127.7
Q ss_pred ccHHHHHHHHHHHccC--C---chhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccCC--cccccch--hhHH
Q 007521 291 FFAPWVALLFLALGVP--P---SIHEKLPEWLWYVLMTPILCLELKIYGQWMSGGQRRLSKVANP--SNHLAVV--GNFV 361 (600)
Q Consensus 291 f~T~~ma~~lLa~~v~--~---~~~~~La~vLW~igval~L~l~l~iy~~w~s~~~~~~~~~~nP--SW~LPvV--G~iV 361 (600)
+++..|++..++.... + .....++.++|+++.++.+++......++....+....+--|| +.+++.+ |..+
T Consensus 5 wF~~vMgtg~~s~~~~~~~~~~~~l~~i~~~l~~l~~~lf~~l~~~~~~r~~~~~~~~~~~l~~p~~~~f~~t~~m~~~~ 84 (320)
T TIGR00816 5 WFAIVLGTGGLALASLSYSFYLPILKDLSDVLFILAIALFFLFTSCWLARLIRYPSNVLAELKHPVLSSFIPLIPISTML 84 (320)
T ss_pred HHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcCChhhhhhhHHHHHHHH
Confidence 4567788887766541 1 1124578889988888876665544445444432222222333 3444332 2222
Q ss_pred HhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCC-CCCCCcchhhHHhhhhhHHHHHHHHHHhcChh-HHH---
Q 007521 362 GALLGATMGIKEGPILFFAIGLAHYTVLFVTLYQRLPTNE-TLPKELHPVFFLFVAAPSVASMAWAKMQGSFN-YGS--- 436 (600)
Q Consensus 362 ~A~aGa~lg~~eis~~~fgiGl~lylvLf~lil~RL~~~~-~~P~~l~PtlfI~vAPpsv~alA~l~L~g~~d-~~a--- 436 (600)
.+..-...+ ...+..+|.+|.++.+.+...+.+++..++ ...++..|+-+++.-++.+++.+...+.+..+ ...
T Consensus 85 l~~~~~~~~-~~~~~~lw~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~paw~lp~V~~~v~~~~~~~l~~~~~~~~~~~~ 163 (320)
T TIGR00816 85 LGIDFIIWG-YPLALGLWYIGAIGQLLFSVIVPFYLFKNESIEIEHTHPGWYLPPVALIFISAAALAILPYLTHELTVLF 163 (320)
T ss_pred HHHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCchhhhcccHHHHHHHHHHHhhccccHHHHHHH
Confidence 222111222 124567899999988877777777777664 45667889999987666666666555544332 111
Q ss_pred HHHHHHHHHHHHHHHHHH-Hhh--h---cCCcccceeeeecchhHHHHHHHHHHHhhch----hhHHHHHHHHHHHHHHH
Q 007521 437 RIAYFIALFLYFSLAVRI-NFF--R---GFKFSLAWWAYTFPMTGAAIATIRYSNEVTS----GVTQALAVILSVISTLT 506 (600)
Q Consensus 437 ~iL~g~glFl~~llav~i-~~~--~---k~~FslsWWAfTFPLga~AiATi~la~~~~s----~~~~~La~il~ilatlv 506 (600)
.+++++|+++|+.+...+ .+. . +....++.|=..=|.+..+.|-..+...-+. .....++.++..++...
T Consensus 164 ~~~~g~G~~l~l~i~~~~~~Rl~~~~~~p~~~~P~~~I~~gP~~~~~~a~~~l~~~~~~~~~~~~~~~~a~~l~~~~~~~ 243 (320)
T TIGR00816 164 YFGWGAGFFLYLSLEAVLLLRLRLHGLLPSALRPTMFINLAPIGVGIVALINIVNHGEFITIKEPFLILAIILWGFGLWQ 243 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCccchhhhhhheeccHHHHHHHHHHHhhccchhhhhhhHHHHHHHHHHHHHHH
Confidence 344888888887655432 222 2 3458899999999999888888875322111 11224555555555444
Q ss_pred HHHHHHHH
Q 007521 507 VTALLVTT 514 (600)
Q Consensus 507 ~~~vlv~T 514 (600)
..+.....
T Consensus 244 ~~~~~~~~ 251 (320)
T TIGR00816 244 LLFAIRLL 251 (320)
T ss_pred HHHHHHHH
Confidence 44444433
No 7
>COG1275 TehA Tellurite resistance protein and related permeases [Inorganic ion transport and metabolism]
Probab=97.43 E-value=0.021 Score=61.19 Aligned_cols=196 Identities=17% Similarity=0.199 Sum_probs=119.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHhcCCCccccccHHHHHHHHHHHccCCchh--hhhHHHHHHHHHH
Q 007521 246 PEINTVLWFISVALVISISLIYLMKVLLYFEAVRREYYHPIRVNFFFAPWVALLFLALGVPPSIH--EKLPEWLWYVLMT 323 (600)
Q Consensus 246 ~~I~~iL~~lalvLfivl~~lyllK~i~~p~~v~~El~hPv~~~Ff~T~~ma~~lLa~~v~~~~~--~~La~vLW~igva 323 (600)
..++.++|++++++-+++.+.+..+..+-. +-+++|..-+=+.+. +++++.+........ ......+|.+++.
T Consensus 103 ~~~~~~lW~~~~~~~l~f~~~~~y~~~~~~---~~~~~~~~Psw~lP~--V~~~v~s~t~~~~~~~~~~~~~~~~~~g~~ 177 (329)
T COG1275 103 PLLAYVLWWFGVALQLFFSAWFIYSLFRGK---KFELETITPSWFLPP--VGIIVASLTASVLLGAYFVIGYVFFGAGFF 177 (329)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhCC---CcccccCccceeccc--cHHHHHHHHhhhHhHHHHHHHHHHHHHHHH
Confidence 478999999998777776666666555432 235555555545544 444443332222211 3466677878877
Q ss_pred HHHHHHHHHHHhhhcccccccccccCCcccccchh--hHHHhhhhhhh--hhhhHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 007521 324 PILCLELKIYGQWMSGGQRRLSKVANPSNHLAVVG--NFVGALLGATM--GIKEGPILFFAIGLAHYTVLFVTLYQRLPT 399 (600)
Q Consensus 324 l~L~l~l~iy~~w~s~~~~~~~~~~nPSW~LPvVG--~iV~A~aGa~l--g~~eis~~~fgiGl~lylvLf~lil~RL~~ 399 (600)
..+++...++.+.+..+. ....+.|+-.+.... ...++...... .....+.++||+|...+++.......|+
T Consensus 178 ~~l~l~~iv~~r~~~~~~--lp~~~~p~i~i~laP~~~~~~~~~~~~~~~~~~~~~~il~g~g~~~~~~~~~~~~~~~-- 253 (329)
T COG1275 178 SYLVLFPIVLYRLFTAGL--LPPAARPTIFIQLAPIGLVGVGLLLIVNSGPSLTFVLILWGFGLLFLFFALLLLLRVL-- 253 (329)
T ss_pred HHHHHHHHHHHHHHHccC--CCcccCCcchhhhccHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 776666556666664432 234556665554432 22222222111 1334677889999998888777776622
Q ss_pred CCCCCCCcchhhHHhhhhhHHHHHHHHHHhcC-----hhHHHHHHHHHHHHHHHHHHHH
Q 007521 400 NETLPKELHPVFFLFVAAPSVASMAWAKMQGS-----FNYGSRIAYFIALFLYFSLAVR 453 (600)
Q Consensus 400 ~~~~P~~l~PtlfI~vAPpsv~alA~l~L~g~-----~d~~a~iL~g~glFl~~llav~ 453 (600)
......|+.|-+.=|.+..+.+-..+... ++.++..++.++.+.+.++.++
T Consensus 254 ---l~~~F~~s~wAftFP~~~~a~s~~~l~~~~~~~~~~~lg~~~~~~~~~~~~~~lv~ 309 (329)
T COG1275 254 ---LRLPFSPSWWAFTFPLVILATSALELGKSIGIGVFHYLGLILGTFLIFIWIVLLVA 309 (329)
T ss_pred ---hcCCCchhHHHHhhhHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23457789999999999988888887543 4567777777887777655444
No 8
>PRK10764 potassium-tellurite ethidium and proflavin transporter; Provisional
Probab=97.01 E-value=0.089 Score=56.04 Aligned_cols=213 Identities=14% Similarity=0.073 Sum_probs=114.6
Q ss_pred HHHHHHHHHHHHHHHHcccCCCCcccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHhcCCCccccccHHHH
Q 007521 217 FGMCLGVSSQAILWKTIATSPSTKFLHIRPEINTVLWFISVALVISISLIYLMKVLLYFEAVRREYYHPIRVNFFFAPWV 296 (600)
Q Consensus 217 FgivMGtGgLAilw~~l~~~p~~~~L~~p~~I~~iL~~lalvLfivl~~lyllK~i~~p~~v~~El~hPv~~~Ff~T~~m 296 (600)
.++.|++-.++..+..+ ...++.++|++++++-+++.+....+++.+ + .+..|-.-+-|++....
T Consensus 84 ~t~~ms~~ll~~~~~~~-----------~~~~a~~lW~~g~~l~l~~~~~~~~~~~~~-~---~~~~~~~PaW~ip~V~~ 148 (324)
T PRK10764 84 SLIPITTMLVAIGLVPY-----------SRPLAVVLFSFGVVGQLAFAAWRTAGLWRG-G---HPEEATTPGLYLPTVAN 148 (324)
T ss_pred hHHHHHHHHHHHHHHhh-----------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-C---cccccCChhhhhccchh
Confidence 34556666666665432 135778889888887766666555555543 2 34555444445543322
Q ss_pred HHHHHHHccCCchhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccCCcccccchhhHHHhhhhhhhh---hhh
Q 007521 297 ALLFLALGVPPSIHEKLPEWLWYVLMTPILCLELKIYGQWMSGGQRRLSKVANPSNHLAVVGNFVGALLGATMG---IKE 373 (600)
Q Consensus 297 a~~lLa~~v~~~~~~~La~vLW~igval~L~l~l~iy~~w~s~~~~~~~~~~nPSW~LPvVG~iV~A~aGa~lg---~~e 373 (600)
. ++.+..-.......+++.+|++|....+.+...++.+...++. ..+..-|+.+|.+-+.-++..+--.++ ...
T Consensus 149 ~-~v~~~a~~~~~~~~~~~~~fg~G~~~~l~l~~i~~~Rl~~~~~--lp~~~~P~l~I~lAP~~~~~~a~l~~~~~~~~~ 225 (324)
T PRK10764 149 N-FVSAMALGALGYHDAGLLFLGAGVFSWLSLEPVILQRLRSSGE--LPTALRPSLGIQLAPAFVGCSAYLSVNGGEGDT 225 (324)
T ss_pred h-hHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--CChhHHHHHHHHHhhHHHHHHHHHHHcCcchhH
Confidence 1 1211111111113577888988988887766666777665542 344556777665544333333222221 123
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcchhhHHhhhhhHHHHHHHHHHhcC-----hhHHHHHHHHHHHHHHH
Q 007521 374 GPILFFAIGLAHYTVLFVTLYQRLPTNETLPKELHPVFFLFVAAPSVASMAWAKMQGS-----FNYGSRIAYFIALFLYF 448 (600)
Q Consensus 374 is~~~fgiGl~lylvLf~lil~RL~~~~~~P~~l~PtlfI~vAPpsv~alA~l~L~g~-----~d~~a~iL~g~glFl~~ 448 (600)
.+.++|++|+..++++.. .+-|+. ..+..|+.|=+.=|.+....+-..+... .+.++..+..+...++.
T Consensus 226 ~~~~l~~~~l~~~~~~l~-~~~~~~-----~~~F~~swWAfTFPl~A~~~at~~l~~~~~~~~~~~la~~~~~~~~~~~~ 299 (324)
T PRK10764 226 LAKMLFGYGLLQLLFLLR-LMPWIL-----SQGFNASFWSFSFGVAALATTGLHLGHGSDNGFFHTLAVPLFIFANFIIA 299 (324)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHc-----CCCCCccHHHHccHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHH
Confidence 567788998877654221 111211 2357788888877877766666666432 23334444444444444
Q ss_pred HHHHH
Q 007521 449 SLAVR 453 (600)
Q Consensus 449 llav~ 453 (600)
.+..+
T Consensus 300 ~v~~~ 304 (324)
T PRK10764 300 LLLLR 304 (324)
T ss_pred HHHHH
Confidence 44443
No 9
>PF13965 SID-1_RNA_chan: dsRNA-gated channel SID-1
Probab=78.97 E-value=1.4e+02 Score=34.95 Aligned_cols=107 Identities=14% Similarity=0.162 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcccccccccccCCcccccchhhHHHhhhhhhhhhhhHHHHHH---HHHHHHHHHHHHH
Q 007521 316 WLWYVLMTPILCLELKIYGQWMSGGQRRLSKVANPSNHLAVVGNFVGALLGATMGIKEGPILFF---AIGLAHYTVLFVT 392 (600)
Q Consensus 316 vLW~igval~L~l~l~iy~~w~s~~~~~~~~~~nPSW~LPvVG~iV~A~aGa~lg~~eis~~~f---giGl~lylvLf~l 392 (600)
++|++..++++...+.+-.+.+.-+.++....+ . +++-.+.|...++.|-.......+.++. -.=+++|++.+.+
T Consensus 396 ~f~iiF~ii~i~~~~~ls~q~Yy~g~~~~~~r~-~-~l~~~i~N~~~~~~gl~~~~~df~~~~l~i~i~n~~lY~~fYii 473 (570)
T PF13965_consen 396 IFWIIFSIIHILSCFFLSLQIYYMGRWKLKSRF-F-LLVLNIINWALAIYGLISSPRDFASFLLAIFIGNLLLYLFFYII 473 (570)
T ss_pred eehhHHHHHHHHHHHHHHhhheeeeeccccchh-h-hhhHHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 678777777666554333333322222221001 0 1111455555555554333333333332 3334445544433
Q ss_pred HHHHhhcCCCCCCCcchhhHHhhhhhHHHHHHHHHH
Q 007521 393 LYQRLPTNETLPKELHPVFFLFVAAPSVASMAWAKM 428 (600)
Q Consensus 393 il~RL~~~~~~P~~l~PtlfI~vAPpsv~alA~l~L 428 (600)
.++..++... .+|-+.+.++-.+.+++.|.-+
T Consensus 474 --mKi~~~E~i~--~~~~~~~~~~~~~W~~a~yff~ 505 (570)
T PF13965_consen 474 --MKIRHREKIL--LKPIIYLVLAFVSWGFALYFFF 505 (570)
T ss_pred --HHHhhcChhH--HHHHHHHHHHHHHHHHHHHHHh
Confidence 3444333322 3455555555555555554443
No 10
>PRK11281 hypothetical protein; Provisional
Probab=76.17 E-value=1.9e+02 Score=36.60 Aligned_cols=21 Identities=10% Similarity=0.091 Sum_probs=15.2
Q ss_pred cHHHHHHHhcCCCccccccHH
Q 007521 274 YFEAVRREYYHPIRVNFFFAP 294 (600)
Q Consensus 274 ~p~~v~~El~hPv~~~Ff~T~ 294 (600)
+-+....+..++.+-+|.-|+
T Consensus 523 ~l~~~~~~ig~~~~D~~~~T~ 543 (1113)
T PRK11281 523 RLQKLAADIGTLKRDSQLHTP 543 (1113)
T ss_pred HHHHHHHhcCCcccCcccccH
Confidence 344556677888888888887
No 11
>TIGR00807 malonate_madL malonate transporter, MadL subunit. The MSS family includes the monobasic malonate:Na+ symporter of Malonomonas rubra. It consists of two integral membrane proteins, MadL and MadM. The transporter is believed to catalyze the electroneutral reversible uptake of H+-malonate with one Na+, and both subunits have been shown to be essential for activity.
Probab=55.22 E-value=98 Score=29.08 Aligned_cols=37 Identities=24% Similarity=0.440 Sum_probs=23.9
Q ss_pred CCccccee-eeecchhHHHHHHHHHHHhhchhhHHHHH
Q 007521 460 FKFSLAWW-AYTFPMTGAAIATIRYSNEVTSGVTQALA 496 (600)
Q Consensus 460 ~~FslsWW-AfTFPLga~AiATi~la~~~~s~~~~~La 496 (600)
..+-..|| ++.-|.+..-.|.-..-..+.+...-.++
T Consensus 60 te~Gi~FW~aMYIPIVVAMAA~QNVv~Al~gG~~Alla 97 (125)
T TIGR00807 60 TQFGVGFWSAMYIPIVVAMAAGQNVVAALSGGMLALLA 97 (125)
T ss_pred HHhHHHHHHccHhHHHHHHhhhchhHHHhcCCchHHHH
Confidence 35777788 78899987665665555555555444444
No 12
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=54.75 E-value=5.5e+02 Score=32.60 Aligned_cols=22 Identities=9% Similarity=0.082 Sum_probs=14.7
Q ss_pred hcHHHHHHHhcCCCccccccHH
Q 007521 273 LYFEAVRREYYHPIRVNFFFAP 294 (600)
Q Consensus 273 ~~p~~v~~El~hPv~~~Ff~T~ 294 (600)
.+-+....+..++.+-+|.-|+
T Consensus 500 ~~l~~~~~~vg~v~~D~~~~T~ 521 (1109)
T PRK10929 500 AFLERSSSRVGKVTQDHFSLTL 521 (1109)
T ss_pred HHHHHHHHhcCCcccccccccH
Confidence 3445556667778777777776
No 13
>PRK10263 DNA translocase FtsK; Provisional
Probab=54.47 E-value=4.7e+02 Score=33.76 Aligned_cols=26 Identities=27% Similarity=0.275 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHH--HHHHHHhhcC
Q 007521 375 PILFFAIGLAHYTVLF--VTLYQRLPTN 400 (600)
Q Consensus 375 s~~~fgiGl~lylvLf--~lil~RL~~~ 400 (600)
.++++.+|+..|++.+ ....++++.+
T Consensus 73 D~L~~LFGl~AYLLP~LL~~~a~~l~R~ 100 (1355)
T PRK10263 73 DTLFFIFGVMAYTIPVIIVGGCWFAWRH 100 (1355)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHhc
Confidence 3445555555555433 2333454433
No 14
>COG1966 CstA Carbon starvation protein, predicted membrane protein [Signal transduction mechanisms]
Probab=52.61 E-value=3.6e+02 Score=31.58 Aligned_cols=55 Identities=27% Similarity=0.529 Sum_probs=30.2
Q ss_pred HHHHHHHH-HHHHHHHHHHhhhccc-ccccccccCCccc--------------------c--cchhhHHHhhhhhhhhh
Q 007521 317 LWYVLMTP-ILCLELKIYGQWMSGG-QRRLSKVANPSNH--------------------L--AVVGNFVGALLGATMGI 371 (600)
Q Consensus 317 LW~igval-~L~l~l~iy~~w~s~~-~~~~~~~~nPSW~--------------------L--PvVG~iV~A~aGa~lg~ 371 (600)
+|.+..+. .+++++.+|++.+..+ -+.+.+..+|+.- . .-.|++|++++++.+|+
T Consensus 4 ~~~v~aa~~iy~igYr~Yg~fi~eKV~~~dp~R~TPA~~~nDG~DYVPtnk~vlfGhHFaaIAGAGPivGPvlAAq~G~ 82 (575)
T COG1966 4 LWFVLAAAIVYAIGYFFYGKFIAEKVFRLDPNRPTPAHRKNDGVDYVPTNKWVLFGHHFASIAGAGPIVGPALAAQYGW 82 (575)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHheeecCCCCCCCceeccCCcccccCCchhhhHHHHHHHhccCcchhHHHHHHhcC
Confidence 56444443 4667778888874432 1122233444332 1 22467888888888875
No 15
>COG4956 Integral membrane protein (PIN domain superfamily) [General function prediction only]
Probab=40.93 E-value=2.4e+02 Score=30.73 Aligned_cols=28 Identities=25% Similarity=0.359 Sum_probs=17.6
Q ss_pred hhHHHHHHHHHHHHHHHHcccCCCCcccC
Q 007521 215 SSFGMCLGVSSQAILWKTIATSPSTKFLH 243 (600)
Q Consensus 215 swFgivMGtGgLAilw~~l~~~p~~~~L~ 243 (600)
-..|.++|..+..-+|...+. +...++.
T Consensus 11 ~i~g~~lG~~~~p~ll~~~~~-~~~~~~~ 38 (356)
T COG4956 11 IIIGAVLGFAVIPELLADLGI-QDTAFLN 38 (356)
T ss_pred HHHHhhhhHhhHHHHHhhcCc-ccchhhc
Confidence 356788888888777776543 2344444
No 16
>PF03817 MadL: Malonate transporter MadL subunit; InterPro: IPR004690 The MSS family includes the monobasic malonate:Na+ symporter of Malonomonas rubra. It consists of two integral membrane proteins, MadL and MadM. The transporter is believed to catalyze the electroneutral reversible uptake of H+-malonate with one Na+, and both subunits have been shown to be essential for activity.
Probab=40.51 E-value=1.9e+02 Score=27.27 Aligned_cols=36 Identities=22% Similarity=0.376 Sum_probs=22.0
Q ss_pred Cccccee-eeecchhHHHHHHHHHHHhhchhhHHHHH
Q 007521 461 KFSLAWW-AYTFPMTGAAIATIRYSNEVTSGVTQALA 496 (600)
Q Consensus 461 ~FslsWW-AfTFPLga~AiATi~la~~~~s~~~~~La 496 (600)
..-..|| |+.-|.+..-.|.-..-..+.+...-.++
T Consensus 61 e~Gi~FW~amYIPIVVAMAA~QNVv~Al~gG~~Alla 97 (125)
T PF03817_consen 61 EQGIEFWSAMYIPIVVAMAAQQNVVAALSGGPVALLA 97 (125)
T ss_pred HhHHHHHHccHHHHHHHHhhhhhhHHhhcCCcchHHH
Confidence 4556667 88999987655555555555554444444
No 17
>PF12576 DUF3754: Protein of unknown function (DUF3754); InterPro: IPR022227 This domain family is found in bacteria, archaea and eukaryotes, and is typically between 135 and 166 amino acids in length. There is a single completely conserved residue P that may be functionally important.
Probab=38.99 E-value=1.5e+02 Score=28.03 Aligned_cols=79 Identities=20% Similarity=0.291 Sum_probs=46.3
Q ss_pred CCcccccCCCCCCcccccccChhhHHHHHHHHHHHHHHHHcccCCCCcccCchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007521 193 RPSEEMVLPNDKTWPFLLRFSISSFGMCLGVSSQAILWKTIATSPSTKFLHIRPEINTVLWFISVALVISISLIYLMKVL 272 (600)
Q Consensus 193 ~~~~~~~l~~~~~w~~L~~fP~swFgivMGtGgLAilw~~l~~~p~~~~L~~p~~I~~iL~~lalvLfivl~~lyllK~i 272 (600)
++.=|+++|.-+ ++++.+-...+++....|+++.+++..... . -.++.+.+...++ -++.++.|+.|.+
T Consensus 45 ~aDLE~llP~~k--v~~~~~D~~~l~~~~vvg~v~~~~~~~~~~-----~---~~~~~~~~~~~~~-~l~~~~~~~~r~~ 113 (141)
T PF12576_consen 45 MADLEMLLPEKK--VRMRPFDRVKLGVSAVVGGVAVFVKLVGMS-----L---LLLSDIFLILILS-LLSALGGYAFRQY 113 (141)
T ss_pred ccchhHhCCCCc--CCcCHHHHHHHHHHHHHHHHHHHHHHhhhH-----H---HHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 344456777775 666677788899999999999999864321 0 0122222222222 2333456777777
Q ss_pred hcHHHHHHHh
Q 007521 273 LYFEAVRREY 282 (600)
Q Consensus 273 ~~p~~v~~El 282 (600)
.-+++-+..+
T Consensus 114 ~~~~~~~~ry 123 (141)
T PF12576_consen 114 TGYKNNRARY 123 (141)
T ss_pred HHHHHHHHHH
Confidence 6555544433
No 18
>PF03248 Rer1: Rer1 family; InterPro: IPR004932 RER1 family proteins are involved in involved in the retrieval of some endoplasmic reticulum membrane proteins from the early golgi compartment. The C terminus of yeast Rer1p interacts with a coatomer complex [].; GO: 0016021 integral to membrane
Probab=37.75 E-value=1.2e+02 Score=30.18 Aligned_cols=53 Identities=19% Similarity=0.452 Sum_probs=26.3
Q ss_pred ccccccC-hhhHHHHHHHHHHHHHHHHcccCCCCcccCchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 007521 207 PFLLRFS-ISSFGMCLGVSSQAILWKTIATSPSTKFLHIRPEINTVLWFISVALVISISLIYLMK 270 (600)
Q Consensus 207 ~~L~~fP-~swFgivMGtGgLAilw~~l~~~p~~~~L~~p~~I~~iL~~lalvLfivl~~lyllK 270 (600)
|+++|+| --..-.|+-...+|+.+... .++++| ++|=+-++-|++++++..-|
T Consensus 100 PFiRRlPEFkFW~~~tka~~i~~~~tff------~~fdiP-----VFWPiLl~Yfi~lf~~tm~~ 153 (176)
T PF03248_consen 100 PFIRRLPEFKFWYSCTKATVISLFCTFF------PFFDIP-----VFWPILLVYFIVLFVLTMKR 153 (176)
T ss_pred CccccchhhHHHHHHHHHHHHHHHHHHH------HhcCCc-----chhHHHHHHHHHHHHHHHHH
Confidence 5666666 22222344445555655443 235543 45555555566555554443
No 19
>PRK12657 putative monovalent cation/H+ antiporter subunit F; Reviewed
Probab=33.80 E-value=3.4e+02 Score=24.58 Aligned_cols=69 Identities=12% Similarity=0.030 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCCCcchhhHHhhhhhHHHHHHHHHHhcChhHHHHHHHHHHHHHHHH
Q 007521 379 FAIGLAHYTVLFVTLYQRLPTNETLPKELHPVFFLFVAAPSVASMAWAKMQGSFNYGSRIAYFIALFLYFS 449 (600)
Q Consensus 379 fgiGl~lylvLf~lil~RL~~~~~~P~~l~PtlfI~vAPpsv~alA~l~L~g~~d~~a~iL~g~glFl~~l 449 (600)
+.+++++..+-..+.++|+...+..|++..-.-. ++...++.++...+..+-+.+.-++..++++-|+.
T Consensus 10 ~~~a~~~l~~a~~l~l~Rlv~GPt~~DRivAlD~--l~~~~v~~i~l~a~~~~~~~~ldvaLvlAll~Fv~ 78 (100)
T PRK12657 10 IISALIIFGIALIICLFRLIKGPTTADRVVTFDT--TSAVVMSIVGVLSVLMGTVSFLDSIMLIAIISFVS 78 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCccHHHHHHHHHH--HHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHH
Confidence 3344444444455567899988877777544332 33444455555554333334444555556555543
No 20
>PF08229 SHR3_chaperone: ER membrane protein SH3 ; InterPro: IPR013248 This family of proteins are membrane localised chaperones that are required for correct plasma membrane localisation of amino acid permeases (AAPs) []. Shr3 prevents AAPs proteins from aggregating and assists in their correct folding. In the absence of Shr3, AAPs are retained in the ER.
Probab=30.91 E-value=94 Score=31.47 Aligned_cols=46 Identities=17% Similarity=0.307 Sum_probs=31.8
Q ss_pred hhHHHHHHHHHHHHHHHHcccCCCCcccCchhhHHHHHHHHHHHHHHHH
Q 007521 215 SSFGMCLGVSSQAILWKTIATSPSTKFLHIRPEINTVLWFISVALVISI 263 (600)
Q Consensus 215 swFgivMGtGgLAilw~~l~~~p~~~~L~~p~~I~~iL~~lalvLfivl 263 (600)
..+..+|++|.+|.+++.+-..+....++ .-+.+++++++++|+..
T Consensus 63 ~~Lh~v~~lglig~~iKl~kp~e~~~lFd---g~SL~Ly~~~i~vYltn 108 (196)
T PF08229_consen 63 YILHIVIGLGLIGLLIKLYKPSESNKLFD---GASLVLYVFGICVYLTN 108 (196)
T ss_pred HHHHHHHHHHHHHHHHHHcCCcHHhhccc---chhHHHHHHHHHHHhHh
Confidence 45778999999999999875443344444 45666666776666544
No 21
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=26.83 E-value=2.4e+02 Score=28.07 Aligned_cols=25 Identities=20% Similarity=0.264 Sum_probs=12.0
Q ss_pred cccccccChhhHHHHHHHHHHHHHH
Q 007521 206 WPFLLRFSISSFGMCLGVSSQAILW 230 (600)
Q Consensus 206 w~~L~~fP~swFgivMGtGgLAilw 230 (600)
|.....-...+|++...+.|+-..+
T Consensus 79 ~~~~ld~~L~~~~if~~~~gi~~~f 103 (206)
T PF06570_consen 79 WLMALDNSLLFFGIFSLLFGIMGFF 103 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4333344445555555555554444
No 22
>PRK09776 putative diguanylate cyclase; Provisional
Probab=26.53 E-value=1.1e+03 Score=28.65 Aligned_cols=20 Identities=20% Similarity=0.172 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 007521 376 ILFFAIGLAHYTVLFVTLYQ 395 (600)
Q Consensus 376 ~~~fgiGl~lylvLf~lil~ 395 (600)
+..|++|-+++.++++-++.
T Consensus 137 ~~~w~~~~~~g~l~~~p~~l 156 (1092)
T PRK09776 137 FLIWVLSEAIGMLALVPLGL 156 (1092)
T ss_pred HHHHHHHHHHHHHHHhhHhh
Confidence 55677777776666555444
No 23
>COG4325 Predicted membrane protein [Function unknown]
Probab=25.53 E-value=4.9e+02 Score=29.32 Aligned_cols=27 Identities=7% Similarity=-0.034 Sum_probs=19.0
Q ss_pred CcchhhHHhhhhhHHHHHHHHHHhcCh
Q 007521 406 ELHPVFFLFVAAPSVASMAWAKMQGSF 432 (600)
Q Consensus 406 ~l~PtlfI~vAPpsv~alA~l~L~g~~ 432 (600)
...-++.+|++..-.+..+.-.+.++.
T Consensus 125 ~nqvvLa~FlctFvysl~vlrtvg~e~ 151 (464)
T COG4325 125 PNQVVLAIFLCTFVYSLGVLRTVGEER 151 (464)
T ss_pred chHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 345567888888888777777776554
No 24
>PF13722 DUF4161: C-terminal domain on CstA (DUF4161)
Probab=25.19 E-value=3.7e+02 Score=25.29 Aligned_cols=37 Identities=14% Similarity=0.123 Sum_probs=25.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHhcC
Q 007521 245 RPEINTVLWFISVALVISISLIYLMKVLLYFEAVRREYYH 284 (600)
Q Consensus 245 p~~I~~iL~~lalvLfivl~~lyllK~i~~p~~v~~El~h 284 (600)
|...+..+..+.++.|.+=+.=...|..|| ..+|+-+
T Consensus 3 p~~~~~~fa~l~v~~f~lTtlDTa~Rl~R~---~~~E~~~ 39 (127)
T PF13722_consen 3 PMSFGYTFAILFVAAFALTTLDTATRLARY---IIQELFG 39 (127)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHh
Confidence 446777787888888877777777787775 3345444
No 25
>PRK09776 putative diguanylate cyclase; Provisional
Probab=24.91 E-value=1.2e+03 Score=28.34 Aligned_cols=15 Identities=7% Similarity=0.045 Sum_probs=9.3
Q ss_pred hHHHHHHHHHHHHHH
Q 007521 313 LPEWLWYVLMTPILC 327 (600)
Q Consensus 313 La~vLW~igval~L~ 327 (600)
..+..||++-++..+
T Consensus 135 ~~~~~w~~~~~~g~l 149 (1092)
T PRK09776 135 RAFLIWVLSEAIGML 149 (1092)
T ss_pred hHHHHHHHHHHHHHH
Confidence 345678887766443
No 26
>PF12794 MscS_TM: Mechanosensitive ion channel inner membrane domain 1
Probab=22.71 E-value=9.9e+02 Score=25.83 Aligned_cols=26 Identities=12% Similarity=0.166 Sum_probs=19.0
Q ss_pred HHHhcHHHHHHHhcCCCccccccHHH
Q 007521 270 KVLLYFEAVRREYYHPIRVNFFFAPW 295 (600)
Q Consensus 270 K~i~~p~~v~~El~hPv~~~Ff~T~~ 295 (600)
|+..+-+...++..|+.+-+|.-|+-
T Consensus 23 ~~~~~L~~~~~~ig~~~~D~~~~T~~ 48 (340)
T PF12794_consen 23 RIKQRLERIAKRIGKVRQDSFSHTPR 48 (340)
T ss_pred HHHHHHHHHHHHcCCccCCCchhhHH
Confidence 44455567778888898888888764
No 27
>PRK07948 putative monovalent cation/H+ antiporter subunit F; Reviewed
Probab=22.22 E-value=5.4e+02 Score=22.62 Aligned_cols=65 Identities=11% Similarity=-0.021 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCCcchhhHHhhhhhHHHHHHHHHHhcChhHHHHHHHHHHHHHHH
Q 007521 382 GLAHYTVLFVTLYQRLPTNETLPKELHPVFFLFVAAPSVASMAWAKMQGSFNYGSRIAYFIALFLYF 448 (600)
Q Consensus 382 Gl~lylvLf~lil~RL~~~~~~P~~l~PtlfI~vAPpsv~alA~l~L~g~~d~~a~iL~g~glFl~~ 448 (600)
++.+..+-..+.++|+...+..|++..-.-.+ +...++.++.......-+.+.-.+..++++-|+
T Consensus 8 ~~~~l~~a~~l~~~Rli~GPt~~DRvvAlD~l--~~~~v~~l~l~~~~~~~~~~ldvalvlAll~Fv 72 (86)
T PRK07948 8 AAVFLSLAAILTTYRILAGPNSLDRLVALDTL--VAVTMCALATWAAWTLDTTVTNAMTALALIGFI 72 (86)
T ss_pred HHHHHHHHHHHHHHHHhcCcChhhHHHHHHHH--HHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHH
Confidence 33344444455568999988888876554444 223344444444322222233344444544444
No 28
>COG5487 Small integral membrane protein [Function unknown]
Probab=21.77 E-value=2.1e+02 Score=23.10 Aligned_cols=36 Identities=25% Similarity=0.282 Sum_probs=24.1
Q ss_pred hhhHHHHHHHHHHHHHHHHcccCCCCcccCchhhHHHHHHHHHHHHHHHHH
Q 007521 214 ISSFGMCLGVSSQAILWKTIATSPSTKFLHIRPEINTVLWFISVALVISIS 264 (600)
Q Consensus 214 ~swFgivMGtGgLAilw~~l~~~p~~~~L~~p~~I~~iL~~lalvLfivl~ 264 (600)
++.-+-++|.||++..- ..+..++|++.+++|++..
T Consensus 11 ialIa~~lGFgGiagaa---------------AgiAkIlF~i~~vlf~vsL 46 (54)
T COG5487 11 IALIAGALGFGGIAGAA---------------AGIAKILFFIFLVLFLVSL 46 (54)
T ss_pred HHHHHHHhCcccHHHHH---------------HhHHHHHHHHHHHHHHHHH
Confidence 34445567777776553 2578899999888876543
No 29
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=20.93 E-value=1.7e+02 Score=27.12 Aligned_cols=29 Identities=24% Similarity=0.274 Sum_probs=19.4
Q ss_pred CcccccchhhHHHhhhhhhhhhhhHHHHH
Q 007521 350 PSNHLAVVGNFVGALLGATMGIKEGPILF 378 (600)
Q Consensus 350 PSW~LPvVG~iV~A~aGa~lg~~eis~~~ 378 (600)
=.+.+|.++.++++.+|..++..+...++
T Consensus 73 l~Y~lPll~li~g~~l~~~~~~~e~~~~l 101 (135)
T PF04246_consen 73 LVYLLPLLALIAGAVLGSYLGGSELWAIL 101 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567888888888888777655544333
No 30
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=20.12 E-value=1.2e+03 Score=27.59 Aligned_cols=44 Identities=18% Similarity=0.155 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHhhhcccccccccccCCcccccchhhHHH
Q 007521 319 YVLMTPILCLELKIYGQWMSGGQRRLSKVANPSNHLAVVGNFVG 362 (600)
Q Consensus 319 ~igval~L~l~l~iy~~w~s~~~~~~~~~~nPSW~LPvVG~iV~ 362 (600)
.+|.+.+++++.-+..||+...+++.+..-..=|+++..|.+..
T Consensus 12 ~~G~~~q~~F~~rf~~QW~~sek~~~s~~p~~FW~~Sl~g~~~l 55 (608)
T PRK01021 12 PLGLFANLFFGSAFCIQWFLSKKRKYSYVPKIFWILSSIGAVLM 55 (608)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCccCchHHHHHHHHHHHHH
Confidence 35666677777767777775543333333333567777665443
Done!