Query 007521
Match_columns 600
No_of_seqs 172 out of 979
Neff 5.2
Searched_HMMs 29240
Date Mon Mar 25 03:49:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007521.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007521hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3m73_A Tellurite resistance pr 100.0 4.7E-56 1.6E-60 461.7 32.5 305 211-527 8-314 (314)
2 3m73_A Tellurite resistance pr 97.5 0.0032 1.1E-07 65.0 18.0 215 214-453 81-301 (314)
3 2knc_B Integrin beta-3; transm 15.0 2.2E+02 0.0074 23.5 4.9 26 248-273 11-36 (79)
4 2fb7_A SM-like protein, LSM-14 10.7 1.7E+02 0.0058 25.2 3.0 53 526-585 41-93 (95)
5 2k9j_B Integrin beta-3; transm 10.4 3.6E+02 0.012 19.7 4.3 30 247-276 9-38 (43)
6 2wjn_M Reaction center protein 7.6 1.7E+03 0.057 22.9 9.4 60 440-506 149-214 (324)
7 3ug9_A Archaeal-type opsin 1, 6.4 2.4E+02 0.0082 29.4 2.6 24 247-270 66-89 (333)
8 1eys_M Photosynthetic reaction 6.1 1.6E+03 0.056 23.0 8.4 24 177-224 39-62 (324)
9 2vxe_A CG10686-PA; EDC3, CAR-1 5.0 2.2E+02 0.0074 24.2 1.0 26 559-584 61-86 (88)
10 2r9r_B Paddle chimera voltage 5.0 2.8E+02 0.0097 30.0 2.2 153 435-599 345-498 (514)
No 1
>3m73_A Tellurite resistance protein TEHA homolog; anion channel, alpha helical integral membrane protein, STRU genomics, PSI-2; HET: BOG; 1.15A {Haemophilus influenzae} PDB: 3m75_A* 3m74_A* 3m77_A* 3m71_A* 3m7b_A* 3m7c_A* 3m7e_A* 3m7l_A* 3m78_A* 3m76_A* 3m72_A*
Probab=100.00 E-value=4.7e-56 Score=461.73 Aligned_cols=305 Identities=20% Similarity=0.303 Sum_probs=277.1
Q ss_pred ccChhhHHHHHHHHHHHHHHHHcccCCCCcccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHhcCCCcccc
Q 007521 211 RFSISSFGMCLGVSSQAILWKTIATSPSTKFLHIRPEINTVLWFISVALVISISLIYLMKVLLYFEAVRREYYHPIRVNF 290 (600)
Q Consensus 211 ~fP~swFgivMGtGgLAilw~~l~~~p~~~~L~~p~~I~~iL~~lalvLfivl~~lyllK~i~~p~~v~~El~hPv~~~F 290 (600)
++|++||+++||||++|++|+.+++ .++.++.++.+++++|+++|++++++|++|+++||+++++|++||++++|
T Consensus 8 ~~p~~~F~~~MGtg~la~~~~~~~~-----~~~~~~~i~~~l~~l~~~l~~~l~~~~~~r~~~~p~~~~~~l~hPv~~~f 82 (314)
T 3m73_A 8 PLPTGYFGIPLGLAALSLAWFHLEN-----LFPAARMVSDVLGIVASAVWILFILMYAYKLRYYFEEVRAEYHSPVRFSF 82 (314)
T ss_dssp SSCGGGGHHHHHHHHHHHHHHTTTT-----TCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTGGGG
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHH-----hCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcCCcchhh
Confidence 5799999999999999999998754 24556799999999999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHccCCchhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccCCcccccchh-hHHHhhhhhhh
Q 007521 291 FFAPWVALLFLALGVPPSIHEKLPEWLWYVLMTPILCLELKIYGQWMSGGQRRLSKVANPSNHLAVVG-NFVGALLGATM 369 (600)
Q Consensus 291 f~T~~ma~~lLa~~v~~~~~~~La~vLW~igval~L~l~l~iy~~w~s~~~~~~~~~~nPSW~LPvVG-~iV~A~aGa~l 369 (600)
++|++|++++++.+..++. ..++.++||+++++++++++.+..+++.++ ++..+++||+|++|+|| ++|++++|+.+
T Consensus 83 ~~t~~ma~~~l~~~~~~~~-~~~a~~lW~~~~~l~l~~~~~~~~~~~~~~-~~~~~~~~psW~lp~V~~~~V~a~~g~~~ 160 (314)
T 3m73_A 83 IALIPITTMLVGDILYRWN-PLIAEVLIWIGTIGQLLFSTLRVSELWQGG-VFEQKSTHPSFYLPAVAANFTSASSLALL 160 (314)
T ss_dssp GGHHHHHHHHHHHHHTTTC-HHHHHHHHHHHHHHHHHHHHHHTGGGGGCS-SSCGGGCCGGGHHHHTHHHHHHCC-TTTT
T ss_pred HHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cCcccccCchhHhhccHHHHHHHHhhhhh
Confidence 9999999999998887664 578899999999999988877666666553 24568999999999999 79999999999
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcchhhHHhhhhhHHHHHHHHHHhc-ChhHHHHHHHHHHHHHHH
Q 007521 370 GIKEGPILFFAIGLAHYTVLFVTLYQRLPTNETLPKELHPVFFLFVAAPSVASMAWAKMQG-SFNYGSRIAYFIALFLYF 448 (600)
Q Consensus 370 g~~eis~~~fgiGl~lylvLf~lil~RL~~~~~~P~~l~PtlfI~vAPpsv~alA~l~L~g-~~d~~a~iL~g~glFl~~ 448 (600)
+.++.++++||+|+++|+++++++++|+++ +.+|++++|++||++||+|++++||+.+.+ ..|.++.++|++|+++++
T Consensus 161 ~~~~~~~~~~~~G~~~~l~l~~i~~~Rl~~-~~lp~~~~P~~~I~~aP~~~~~~a~l~l~~~~~~~~~~~l~~~~l~~~~ 239 (314)
T 3m73_A 161 GYHDLGYLFFGAGMIAWIIFEPVLLQHLRI-SSLEPQFRATMGIVLAPAFVCVSAYLSINHGEVDTLAKILWGYGFLQLF 239 (314)
T ss_dssp TCCC-CHHHHHHHHHHHHHHHHHHHHHHHH-TCCCHHHHGGGGGGGHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCChhhhhHHHHHHhhHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999 889999999999999999999999999974 578999999999999998
Q ss_pred HHHHHHHhhhcCCcccceeeeecchhHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCC
Q 007521 449 SLAVRINFFRGFKFSLAWWAYTFPMTGAAIATIRYSNEVTSGVTQALAVILSVISTLTVTALLVTTILHAFVLRDLFPN 527 (600)
Q Consensus 449 llav~i~~~~k~~FslsWWAfTFPLga~AiATi~la~~~~s~~~~~La~il~ilatlv~~~vlv~Tl~~v~~~g~Lfp~ 527 (600)
+++..++++++++|+++|||||||+|++++||+++++ +.++++++.+++++++++|++++++|++++ .+|++|+.
T Consensus 240 ~~~~~~~~~~~~~F~~~wWaftFPl~~~a~at~~l~~---~~~~~~l~~~l~~~~~~~~~~v~~~tl~~~-~~g~l~~~ 314 (314)
T 3m73_A 240 FLLRLFPWIVEKGLNIGLWAFSAGLASMANSATAFYH---GNVLQGVSIFAFVFSNVMIGLLVLMTIYKL-TKGQFFLK 314 (314)
T ss_dssp HHHHHHHHHTTTCCCGGGGGGHHHHHHHHHHHHHHHH---TTSSHHHHHHHHHHHHHHHHHHHHHHHHHH-HTTCSCC-
T ss_pred HHHHHHHHHcCCCCCccHHHHhhHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCcCCC
Confidence 7766677788899999999999999999999999999 788999999999999999999999999884 89999873
No 2
>3m73_A Tellurite resistance protein TEHA homolog; anion channel, alpha helical integral membrane protein, STRU genomics, PSI-2; HET: BOG; 1.15A {Haemophilus influenzae} PDB: 3m75_A* 3m74_A* 3m77_A* 3m71_A* 3m7b_A* 3m7c_A* 3m7e_A* 3m7l_A* 3m78_A* 3m76_A* 3m72_A*
Probab=97.52 E-value=0.0032 Score=64.97 Aligned_cols=215 Identities=12% Similarity=0.029 Sum_probs=126.7
Q ss_pred hhhHHHHHHHHHHHHHHHHcccCCCCcccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHhcCCCccccccH
Q 007521 214 ISSFGMCLGVSSQAILWKTIATSPSTKFLHIRPEINTVLWFISVALVISISLIYLMKVLLYFEAVRREYYHPIRVNFFFA 293 (600)
Q Consensus 214 ~swFgivMGtGgLAilw~~l~~~p~~~~L~~p~~I~~iL~~lalvLfivl~~lyllK~i~~p~~v~~El~hPv~~~Ff~T 293 (600)
.-..+..||+..++..+..+ .+.++.++|++++++-+++......+.++.. +.+++|-.-+-++
T Consensus 81 ~f~~t~~ma~~~l~~~~~~~-----------~~~~a~~lW~~~~~l~l~~~~~~~~~~~~~~---~~~~~~~~psW~l-- 144 (314)
T 3m73_A 81 SFIALIPITTMLVGDILYRW-----------NPLIAEVLIWIGTIGQLLFSTLRVSELWQGG---VFEQKSTHPSFYL-- 144 (314)
T ss_dssp GGGGHHHHHHHHHHHHHTTT-----------CHHHHHHHHHHHHHHHHHHHHHHTGGGGGCS---SSCGGGCCGGGHH--
T ss_pred hhHHHHHHHHHHHHHHHHHh-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---cCcccccCchhHh--
Confidence 34567788888777766321 1368889999988776654432222322211 0123332222222
Q ss_pred HHHHHHHHHHcc-CCchhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccCCcccccchhhHHHhhhhhhhh--
Q 007521 294 PWVALLFLALGV-PPSIHEKLPEWLWYVLMTPILCLELKIYGQWMSGGQRRLSKVANPSNHLAVVGNFVGALLGATMG-- 370 (600)
Q Consensus 294 ~~ma~~lLa~~v-~~~~~~~La~vLW~igval~L~l~l~iy~~w~s~~~~~~~~~~nPSW~LPvVG~iV~A~aGa~lg-- 370 (600)
+.++.+.++... .......+++.+|.+|+...+++...++++.+. +. ..+..-|+.+|+.-+.-++..+...++
T Consensus 145 p~V~~~~V~a~~g~~~~~~~~~~~~~~~G~~~~l~l~~i~~~Rl~~-~~--lp~~~~P~~~I~~aP~~~~~~a~l~l~~~ 221 (314)
T 3m73_A 145 PAVAANFTSASSLALLGYHDLGYLFFGAGMIAWIIFEPVLLQHLRI-SS--LEPQFRATMGIVLAPAFVCVSAYLSINHG 221 (314)
T ss_dssp HHTHHHHHHCC-TTTTTCCC-CHHHHHHHHHHHHHHHHHHHHHHHH-TC--CCHHHHGGGGGGGHHHHHHHHHHHHHTTT
T ss_pred hccHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cC--CChhhhhHHHHHHhhHHHHHHHHHHHcCC
Confidence 344432332211 111112478889999999887766666667666 42 345677888887765544444333332
Q ss_pred -hhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcchhhHHhhhhhHHHHHHHHHHhc--ChhHHHHHHHHHHHHHH
Q 007521 371 -IKEGPILFFAIGLAHYTVLFVTLYQRLPTNETLPKELHPVFFLFVAAPSVASMAWAKMQG--SFNYGSRIAYFIALFLY 447 (600)
Q Consensus 371 -~~eis~~~fgiGl~lylvLf~lil~RL~~~~~~P~~l~PtlfI~vAPpsv~alA~l~L~g--~~d~~a~iL~g~glFl~ 447 (600)
....+.++|++|+..++++... +.|+. +.+..|+.|=+.=|.+..+.|-..+.. .+..++..+..+....|
T Consensus 222 ~~~~~~~~l~~~~l~~~~~~~~~-~~~~~-----~~~F~~~wWaftFPl~~~a~at~~l~~~~~~~~l~~~l~~~~~~~~ 295 (314)
T 3m73_A 222 EVDTLAKILWGYGFLQLFFLLRL-FPWIV-----EKGLNIGLWAFSAGLASMANSATAFYHGNVLQGVSIFAFVFSNVMI 295 (314)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHH-HHHHT-----TTCCCGGGGGGHHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHH-HHHHc-----CCCCCccHHHHhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 1246788999999888766553 33322 246889999998899988888777754 34556666666666666
Q ss_pred HHHHHH
Q 007521 448 FSLAVR 453 (600)
Q Consensus 448 ~llav~ 453 (600)
..+.++
T Consensus 296 ~~v~~~ 301 (314)
T 3m73_A 296 GLLVLM 301 (314)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 655554
No 3
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=14.98 E-value=2.2e+02 Score=23.46 Aligned_cols=26 Identities=19% Similarity=0.446 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007521 248 INTVLWFISVALVISISLIYLMKVLL 273 (600)
Q Consensus 248 I~~iL~~lalvLfivl~~lyllK~i~ 273 (600)
.+.++.+++.++.+.+.++.+.|++.
T Consensus 11 ~~Iv~gvi~gilliGllllliwk~~~ 36 (79)
T 2knc_B 11 LVVLLSVMGAILLIGLAALLIWKLLI 36 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444445555555555555443
No 4
>2fb7_A SM-like protein, LSM-14_N (RAP55); DR.13312, BC055387, AAH55387, stronGly BENT five-stranded antiparallel beta- sheet, structural genomics, PSI; NMR {Danio rerio} SCOP: b.38.1.5 PDB: 2vxf_A
Probab=10.70 E-value=1.7e+02 Score=25.22 Aligned_cols=53 Identities=17% Similarity=0.340 Sum_probs=33.9
Q ss_pred CCccceeeccCCCCCccCcccccceeeccCCCCchhhhhhhhcccCCcccccccccCCCC
Q 007521 526 PNDIAIAISKRKPKHHHHHHNYLKWLNRRHGSSDHNDIENFLKFSYPEEKDLEACENPSS 585 (600)
Q Consensus 526 p~d~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 585 (600)
+++-+||.............. ..--.-++++-.|.-|..+|-|||+.+.+|+.
T Consensus 41 ~~~sTiaL~nVRsfGTEgR~~-------~~~ipp~~~vyeyIvFrGsDIKDL~V~e~p~~ 93 (95)
T 2fb7_A 41 TENSTVALAKVRSFGTEDRPT-------DRPIAPRDETFEYIIFRGSDIKDLTVCEPPKP 93 (95)
T ss_dssp TTTTEEEEESCCCCSCCSSSC-------SSCCCSCCCCSSCEEECSTTEEEEEESCCSCS
T ss_pred CccCEEEEEeeeEecccCCCC-------CCccCCCCcceeEEEEcCCCcceEEEecCCCC
Confidence 556677776544433321111 11123478888999999999999999877653
No 5
>2k9j_B Integrin beta-3; transmembrane complex, cell adhesion, cleavage on basic residues, disease mutation, glycoprotein, pyrrolidone carboxylic acid; NMR {Homo sapiens} PDB: 2rmz_A 2rn0_A 2l91_A
Probab=10.35 E-value=3.6e+02 Score=19.67 Aligned_cols=30 Identities=17% Similarity=0.351 Sum_probs=18.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcHH
Q 007521 247 EINTVLWFISVALVISISLIYLMKVLLYFE 276 (600)
Q Consensus 247 ~I~~iL~~lalvLfivl~~lyllK~i~~p~ 276 (600)
....++..++.++.+.+.++.+.|+..+-+
T Consensus 9 ~~~Iv~gvi~~ivliGl~lLliwk~~~~i~ 38 (43)
T 2k9j_B 9 ILVVLLSVMGAILLIGLAALLIWKLLITIH 38 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EeehHHHHHHHHHHHHHHHHHHHHHHHhee
Confidence 444455555656666666677777765543
No 6
>2wjn_M Reaction center protein M chain; bacteriochlorophyll, lipidic-sponge phase, photosynthesis, R center, electron transport, cell membrane; HET: HEM FME BCB BPB MPG MQ7 NS5; 1.86A {Rhodopseudomonas viridis} PDB: 2wjm_M* 2x5u_M* 2x5v_M* 4ac5_M* 3t6e_M* 1prc_M* 1r2c_M* 1vrn_M* 1dxr_M* 2jbl_M* 2prc_M* 3d38_M* 3prc_M* 2i5n_M* 5prc_M* 6prc_M* 7prc_M* 3g7f_M* 3t6d_M*
Probab=7.56 E-value=1.7e+03 Score=22.95 Aligned_cols=60 Identities=15% Similarity=0.156 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCcccceeeeecchhHHHH------HHHHHHHhhchhhHHHHHHHHHHHHHHH
Q 007521 440 YFIALFLYFSLAVRINFFRGFKFSLAWWAYTFPMTGAAI------ATIRYSNEVTSGVTQALAVILSVISTLT 506 (600)
Q Consensus 440 ~g~glFl~~llav~i~~~~k~~FslsWWAfTFPLga~Ai------ATi~la~~~~s~~~~~La~il~ilatlv 506 (600)
+..+++.|+.+.+.-+ .-++=|+.-+|.|+++. -..+|++..- +.++.+++..+.-.++.
T Consensus 149 FsaaI~~~~~l~lirP------ilmGsWs~a~P~GI~~hldw~~~fs~~ygN~~y-NPFHmL~Iaf~~gsaLl 214 (324)
T 2wjn_M 149 FAAAIFFVLCIGCIHP------TLVGSWSEGVPFGIWPHIDWLTAFSIRYGNFYY-CPWHGFSIGFAYGCGLL 214 (324)
T ss_dssp HHHHHHHHHHHHTHHH------HHHTCGGGSCCBSHHHHHHHHHHHHHHTTCGGG-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhh------cccccccccCCcccccccchhhhHhHhhcccee-CcHHHhhhhhhcccchh
Confidence 3445555554443322 23444999999999863 2333444443 35678887766555443
No 7
>3ug9_A Archaeal-type opsin 1, archaeal-type opsin 2; microbialrhodopsin, seven-transmembrane, light-gated cation membrane protein; HET: RET OLA; 2.30A {Chlamydomonas reinhardtii}
Probab=6.42 E-value=2.4e+02 Score=29.35 Aligned_cols=24 Identities=21% Similarity=0.252 Sum_probs=13.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 007521 247 EINTVLWFISVALVISISLIYLMK 270 (600)
Q Consensus 247 ~I~~iL~~lalvLfivl~~lyllK 270 (600)
..+..++++..+++++.++.+.+-
T Consensus 66 ~~~~~~lWvvfa~M~aatlfF~~~ 89 (333)
T 3ug9_A 66 LAANILQWITFALSALCLMFYGYQ 89 (333)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666677666666655554443
No 8
>1eys_M Photosynthetic reaction center; membrane protein complex, electron transport; HET: BGL BCL BPH MQ8 HEM CRT LDA PEF; 2.20A {Thermochromatium tepidum} SCOP: f.26.1.1
Probab=6.08 E-value=1.6e+03 Score=23.02 Aligned_cols=24 Identities=21% Similarity=0.137 Sum_probs=19.4
Q ss_pred ccccccccCCCccccCCCcccccCCCCCCcccccccChhhHHHHHHHH
Q 007521 177 VDRYFDALQGPELDTLRPSEEMVLPNDKTWPFLLRFSISSFGMCLGVS 224 (600)
Q Consensus 177 ~~~~f~~l~g~~~~~~~~~~~~~l~~~~~w~~L~~fP~swFgivMGtG 224 (600)
+++.+|+=.|| +-.+|||+.+=..
T Consensus 39 ~G~~gdaq~GP------------------------iYlG~fGv~s~~~ 62 (324)
T 1eys_M 39 LGKIGDAQIGP------------------------IYLGLTGTLSIFF 62 (324)
T ss_dssp HHHHSCCCBCC------------------------CCCCHHHHHHHHH
T ss_pred HHhhcccccCC------------------------EeeeHHHHHHHHH
Confidence 78889998888 7888999886544
No 9
>2vxe_A CG10686-PA; EDC3, CAR-1, P-bodies, decapping, mRNA decay, LSM proteins, translational repression, transcription; NMR {Drosophila melanogaster}
Probab=5.02 E-value=2.2e+02 Score=24.22 Aligned_cols=26 Identities=19% Similarity=0.400 Sum_probs=22.6
Q ss_pred chhhhhhhhcccCCcccccccccCCC
Q 007521 559 DHNDIENFLKFSYPEEKDLEACENPS 584 (600)
Q Consensus 559 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 584 (600)
-++++-.|.-|..+|-|||+.+.+.|
T Consensus 61 p~~~vy~yIvFrgsDIKdL~V~~~~p 86 (88)
T 2vxe_A 61 PQSQIYDYILFRGSDIKDIRVVNNHT 86 (88)
T ss_dssp CCCSCEEEEEEETTTEEEEEECCCCC
T ss_pred CCCceeeEEEEccCCccEEEEeccCC
Confidence 37788899999999999999987765
No 10
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=4.99 E-value=2.8e+02 Score=30.03 Aligned_cols=153 Identities=16% Similarity=0.084 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HhhhcCCcccceeeeecchhHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHH
Q 007521 435 GSRIAYFIALFLYFSLAVRI-NFFRGFKFSLAWWAYTFPMTGAAIATIRYSNEVTSGVTQALAVILSVISTLTVTALLVT 513 (600)
Q Consensus 435 ~a~iL~g~glFl~~llav~i-~~~~k~~FslsWWAfTFPLga~AiATi~la~~~~s~~~~~La~il~ilatlv~~~vlv~ 513 (600)
...++..++++++-.+.... ..-....|.--..|+. .+..++.|.-|+...+......+-.++.+++.++++.+++.
T Consensus 345 ~ll~~l~i~~~if~~~~~~~e~~~~~~~F~s~~~a~y--~~~vT~TTvGYGDi~P~t~~gr~f~~~~~l~G~~~l~l~ia 422 (514)
T 2r9r_B 345 LLIFFLFIGVILFSSAVYFAEADERDSQFPSIPDAFW--WAVVSMTTVGYGDMVPTTIGGKIVGSLCAIAGVLTIALPVP 422 (514)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCTTCSCSSHHHHHH--HHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHHHHHHHhhhheeeccCCCccccchhhhhh--eeeeEEEecccCCCCCCCcchHhhehhHHHHHHHHHHHHHH
Q ss_pred HHHHHHHccccCCCccceeeccCCCCCccCcccccceeeccCCCCchhhhhhhhcccCCcccccccccCCCCCCCCcCCC
Q 007521 514 TILHAFVLRDLFPNDIAIAISKRKPKHHHHHHNYLKWLNRRHGSSDHNDIENFLKFSYPEEKDLEACENPSSTNGKESSD 593 (600)
Q Consensus 514 Tl~~v~~~g~Lfp~d~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 593 (600)
.+...+..-.-=..+.-+........... ..-.+.+-++.+.--...++|..++|.......+|-....+
T Consensus 423 vI~~~f~~~~~~~~~~~~~~l~~h~iicg----------~~~~~~~l~~~~~~~~~~~s~~~el~e~~~~~~~~~~~~~~ 492 (514)
T 2r9r_B 423 VIVSNFNYFYHRETEGEEQAQYLQVTSSP----------KIPSSPDLKKSRSASTISKSDYMEIQEGVNNSNEDFREENL 492 (514)
T ss_dssp HHHHHHHHHHHHHC------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCEEEeC----------CCccchhHHhcccCCCccccccccccccccccccccccccc
Q ss_pred CCCCCC
Q 007521 594 STSSPT 599 (600)
Q Consensus 594 ~~~~~~ 599 (600)
+++.++
T Consensus 493 ~~~~~~ 498 (514)
T 2r9r_B 493 KTANST 498 (514)
T ss_dssp ------
T ss_pred ccCCcc
Done!