Query 007521
Match_columns 600
No_of_seqs 172 out of 979
Neff 5.2
Searched_HMMs 13730
Date Mon Mar 25 03:50:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007521.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/007521hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2i5nm1 f.26.1.1 (M:1-323) M ( 8.3 2.8E+02 0.021 26.2 6.5 62 438-506 146-213 (323)
2 d1fx8a_ f.19.1.1 (A:) Glycerol 6.0 7.8E+02 0.057 21.3 10.1 22 260-281 90-111 (254)
3 d2vxfa1 b.38.1.5 (A:6-85) LSM1 5.0 1.1E+02 0.0083 23.5 1.3 26 559-584 52-77 (80)
4 d1eysm_ f.26.1.1 (M:) M (mediu 4.6 4.3E+02 0.031 24.8 5.4 62 438-506 147-214 (318)
5 d1ng7a_ a.178.1.1 (A:) Soluble 4.6 1E+02 0.0073 22.6 0.6 28 6-33 10-37 (60)
6 d2j8cm1 f.26.1.1 (M:1-303) M ( 4.4 6.3E+02 0.046 23.4 6.5 61 439-506 149-215 (303)
7 d1r3jc_ f.14.1.1 (C:) Potassiu 4.0 7.3E+02 0.053 18.3 7.3 16 288-303 39-54 (103)
8 d1v54d_ f.23.1.1 (D:) Mitochon 3.4 6.1E+02 0.044 21.0 4.9 19 389-407 90-108 (144)
9 d2axtd1 f.26.1.1 (D:13-352) Ph 3.1 1.6E+03 0.11 20.8 10.0 42 462-504 150-196 (340)
10 d2j8cl1 f.26.1.1 (L:1-281) L ( 2.8 8.6E+02 0.062 22.2 5.7 72 438-517 119-196 (281)
No 1
>d2i5nm1 f.26.1.1 (M:1-323) M (medium) subunit {Rhodopseudomonas viridis [TaxId: 1079]}
Probab=8.30 E-value=2.8e+02 Score=26.21 Aligned_cols=62 Identities=15% Similarity=0.141 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCcccceeeeecchhHHHH------HHHHHHHhhchhhHHHHHHHHHHHHHHH
Q 007521 438 IAYFIALFLYFSLAVRINFFRGFKFSLAWWAYTFPMTGAAI------ATIRYSNEVTSGVTQALAVILSVISTLT 506 (600)
Q Consensus 438 iL~g~glFl~~llav~i~~~~k~~FslsWWAfTFPLga~Ai------ATi~la~~~~s~~~~~La~il~ilatlv 506 (600)
.++..++++|+++.+.- |.-++=|+.-||.|+++- -.++|++..- +.++.+++.++.-.++.
T Consensus 146 ~AFsaAI~~y~~L~~iR------PilmGsWsea~PyGIf~HLDWt~~fs~~ygN~~Y-NPfHmLsIaFlygsaLl 213 (323)
T d2i5nm1 146 WNFAAAIFFVLCIGCIH------PTLVGSWSEGVPFGIWPHIDWLTAFSIRYGNFYY-CPWHGFSIGFAYGCGLL 213 (323)
T ss_dssp HHHHHHHHHHHHHHTHH------HHHHTCGGGSCCBSHHHHHHHHHHHHHHTTCGGG-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhe------ecccccchhccccchhhHHHHHHHHHHHhcceee-CHHHHHHHHHHHHHHHH
Confidence 34556667766555432 233455999999999863 3334444443 45788887776655544
No 2
>d1fx8a_ f.19.1.1 (A:) Glycerol uptake facilitator protein GlpF {Escherichia coli [TaxId: 562]}
Probab=5.99 E-value=7.8e+02 Score=21.30 Aligned_cols=22 Identities=18% Similarity=-0.034 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHhcHHHHHHH
Q 007521 260 VISISLIYLMKVLLYFEAVRRE 281 (600)
Q Consensus 260 fivl~~lyllK~i~~p~~v~~E 281 (600)
...+....+++.+++......+
T Consensus 90 lGa~~ga~l~~~~~~~~~~~~~ 111 (254)
T d1fx8a_ 90 AGAFCAAALVYGLYYNLFFDFE 111 (254)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhhhhc
Confidence 3444555556666555444443
No 3
>d2vxfa1 b.38.1.5 (A:6-85) LSM14 homolog A (Lsm14a) {Zebrafish (Danio rerio) [TaxId: 7955]}
Probab=5.03 E-value=1.1e+02 Score=23.52 Aligned_cols=26 Identities=27% Similarity=0.565 Sum_probs=22.2
Q ss_pred chhhhhhhhcccCCcccccccccCCC
Q 007521 559 DHNDIENFLKFSYPEEKDLEACENPS 584 (600)
Q Consensus 559 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 584 (600)
-++++-.|..|-.+|-|||+.+.+|+
T Consensus 52 p~~~vy~~IvFrgsDIKdL~v~e~p~ 77 (80)
T d2vxfa1 52 PRDETFEYIIFRGSDIKDLTVCEPPK 77 (80)
T ss_dssp CCCCCEEEEEEETTTEEEEEESSCCC
T ss_pred CCCcceeEEEEcCcCcceEEeccCCC
Confidence 37788899999999999999977654
No 4
>d1eysm_ f.26.1.1 (M:) M (medium) subunit {Thermochromatium tepidum [TaxId: 1050]}
Probab=4.60 E-value=4.3e+02 Score=24.85 Aligned_cols=62 Identities=24% Similarity=0.302 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCcccceeeeecchhHHHH------HHHHHHHhhchhhHHHHHHHHHHHHHHH
Q 007521 438 IAYFIALFLYFSLAVRINFFRGFKFSLAWWAYTFPMTGAAI------ATIRYSNEVTSGVTQALAVILSVISTLT 506 (600)
Q Consensus 438 iL~g~glFl~~llav~i~~~~k~~FslsWWAfTFPLga~Ai------ATi~la~~~~s~~~~~La~il~ilatlv 506 (600)
+++..++++|+.+.+.-+ .-++=|+.-||.|+++. -.++|++..- +.++.+++.++.-.++.
T Consensus 147 ~AF~~aI~~y~~l~~irP------ilmGsW~~a~PyGIf~HLDW~~~fs~~ygN~~Y-NPfHmlsIafl~gsaLl 214 (318)
T d1eysm_ 147 WAFAAAIFFYLVLGFIRP------VMMGSWAKAVPFGIFPHLDWTAAFSIRYGNLYY-NPFHMLSIAFLYGSALL 214 (318)
T ss_dssp HHHHHHHHHHHHHHTHHH------HHHTCGGGSCCBCTTHHHHHHHHHHHHTTCGGG-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhee------cccccchhcccchHHHHHHHHHHHHHHhceeee-CHHHHHHHHHHHHHHHH
Confidence 344556666665544322 33455999999998753 2334444433 45788887766555444
No 5
>d1ng7a_ a.178.1.1 (A:) Soluble domain of poliovirus core protein 3a {Poliovirus type 1, strain Mahoney [TaxId: 12080]}
Probab=4.56 E-value=1e+02 Score=22.59 Aligned_cols=28 Identities=25% Similarity=0.443 Sum_probs=22.6
Q ss_pred ccccccccCCCcccchhhhcccccccCc
Q 007521 6 NIDSEKQKSSEEIPSLIKFISSNELEGF 33 (600)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 33 (600)
+|+..+.--|+++--|++-+.|+|+--+
T Consensus 10 ~I~v~~tPpP~aI~DLLkSVDSeEVReY 37 (60)
T d1ng7a_ 10 KIDIKTSPPPECINDLLQAVDSQEVRDY 37 (60)
T ss_dssp SCCCSCCCSSTTTHHHHHHHCCHHHHHH
T ss_pred EeeeCCCCCChHHHHHHHhcCcHHHHHH
Confidence 3666666777999999999999998655
No 6
>d2j8cm1 f.26.1.1 (M:1-303) M (medium) subunit {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=4.42 E-value=6.3e+02 Score=23.45 Aligned_cols=61 Identities=16% Similarity=0.214 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCcccceeeeecchhHHHHH------HHHHHHhhchhhHHHHHHHHHHHHHHH
Q 007521 439 AYFIALFLYFSLAVRINFFRGFKFSLAWWAYTFPMTGAAIA------TIRYSNEVTSGVTQALAVILSVISTLT 506 (600)
Q Consensus 439 L~g~glFl~~llav~i~~~~k~~FslsWWAfTFPLga~AiA------Ti~la~~~~s~~~~~La~il~ilatlv 506 (600)
++..++++|+.+.+.- |.-++=|+.-||.|+++.- .++|++.. -+.++.+++.++.-.++.
T Consensus 149 AF~~aI~~~~~l~~ir------PilmGsW~~a~PyGIf~hLdW~~~fs~~ygN~~-yNPfHmlsIafl~gsaLl 215 (303)
T d2j8cm1 149 AFLSAIWLWMVLGFIR------PILMGSWSEAVPYGIFSHLDWTNNFSLVHGNLF-YNPFHGLSIAFLYGSALL 215 (303)
T ss_dssp HHHHHHHHHHHHHTHH------HHHHTCGGGSCCBSHHHHHHHHHHHHHHTTCGG-GCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhee------eccccchhhccccchHHHHHHHHHHHhhhceee-cChHHHHHHHHHHHhHHH
Confidence 4455566666554432 2334559999999998632 22233333 345788887766555444
No 7
>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}
Probab=3.95 E-value=7.3e+02 Score=18.34 Aligned_cols=16 Identities=13% Similarity=0.198 Sum_probs=10.6
Q ss_pred cccccHHHHHHHHHHH
Q 007521 288 VNFFFAPWVALLFLAL 303 (600)
Q Consensus 288 ~~Ff~T~~ma~~lLa~ 303 (600)
.++.-+++-++.++.+
T Consensus 39 ~s~~~aly~~~vT~tT 54 (103)
T d1r3jc_ 39 ITYPRALWWSVETATT 54 (103)
T ss_dssp CSHHHHHHHHHHHHTT
T ss_pred Cchhhhhhhheeeecc
Confidence 4566677777777744
No 8
>d1v54d_ f.23.1.1 (D:) Mitochondrial cytochrome c oxidase subunit IV {Cow (Bos taurus) [TaxId: 9913]}
Probab=3.42 E-value=6.1e+02 Score=21.02 Aligned_cols=19 Identities=5% Similarity=0.324 Sum_probs=10.8
Q ss_pred HHHHHHHHhhcCCCCCCCc
Q 007521 389 LFVTLYQRLPTNETLPKEL 407 (600)
Q Consensus 389 Lf~lil~RL~~~~~~P~~l 407 (600)
+...++.|....+.+|..+
T Consensus 90 ~~i~~~~r~~v~p~~P~T~ 108 (144)
T d1v54d_ 90 ALLLIWEKHYVYGPIPHTF 108 (144)
T ss_dssp HHHHHHHHHHTCCCCCGGG
T ss_pred HHHHHHHHHHcCCCCCCCC
Confidence 3344557777666666543
No 9
>d2axtd1 f.26.1.1 (D:13-352) Photosystem II reaction center d2 protein PsbD2 {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=3.08 E-value=1.6e+03 Score=20.81 Aligned_cols=42 Identities=17% Similarity=0.139 Sum_probs=24.2
Q ss_pred cccceeeeecchhHHHHHHHH-----HHHhhchhhHHHHHHHHHHHHH
Q 007521 462 FSLAWWAYTFPMTGAAIATIR-----YSNEVTSGVTQALAVILSVIST 504 (600)
Q Consensus 462 FslsWWAfTFPLga~AiATi~-----la~~~~s~~~~~La~il~ilat 504 (600)
.-++=|+.-+|.|+++.--.. +.+ .--..++.++++.+.-.+
T Consensus 150 i~~Gsw~~~~P~GI~~hldw~~~f~~~~N-~~ynPfHml~Ia~~fg~a 196 (340)
T d2axtd1 150 LGQSSWFFAPSFGVAAIFRFLLFFQGFHN-WTLNPFHMMGVAGVLGGA 196 (340)
T ss_dssp HHSSSGGGSCCSBSHHHHHHHHHHHHHTC-GGGCHHHHHHHHHHHHHH
T ss_pred cccccccccCCccchhhccHHHHHHHhhh-hccChHHHHhHHHhhhhH
Confidence 334558889999987643222 222 223467888866554443
No 10
>d2j8cl1 f.26.1.1 (L:1-281) L (light) subunit {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=2.84 E-value=8.6e+02 Score=22.20 Aligned_cols=72 Identities=22% Similarity=0.343 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCcccceeeeecchhHHHHH-----H-HHHHHhhchhhHHHHHHHHHHHHHHHHHHHH
Q 007521 438 IAYFIALFLYFSLAVRINFFRGFKFSLAWWAYTFPMTGAAIA-----T-IRYSNEVTSGVTQALAVILSVISTLTVTALL 511 (600)
Q Consensus 438 iL~g~glFl~~llav~i~~~~k~~FslsWWAfTFPLga~AiA-----T-i~la~~~~s~~~~~La~il~ilatlv~~~vl 511 (600)
.++..++++|+++.+.-+ .-++=|+.-||.|+++-- . ++|++..- +.++.++++++.-.++.. ..=
T Consensus 119 ~AF~~aI~~~~~l~~irP------ilmGsW~~a~PyGIf~hLdW~~~fs~~ygN~~Y-NPfHmlsI~fl~gsaLl~-AmH 190 (281)
T d2j8cl1 119 FAFAFAILAYLTLVLFRP------VMMGAWGYAFPYGIWTHLDWVSNTGYTYGNFHY-NPAHMIAISFFFTNALAL-ALH 190 (281)
T ss_dssp HHHHHHHHHHHHHHTHHH------HHHTCGGGSCCEETTHHHHHHHHHHHHTSSGGG-CHHHHHHHHHHHHHHHHH-HHH
T ss_pred HHHHHHHHHHHHhheeee------ccccccccccccchHHHHHHHHHHHhHhcceee-CHHHHHHHHHHHHHHHHH-Hhh
Confidence 344556666665544322 234448888999887532 2 44444443 457888877666554443 333
Q ss_pred HHHHHH
Q 007521 512 VTTILH 517 (600)
Q Consensus 512 v~Tl~~ 517 (600)
..|+..
T Consensus 191 GatIla 196 (281)
T d2j8cl1 191 GALVLS 196 (281)
T ss_dssp HHHHHH
T ss_pred hhhhee
Confidence 344444
Done!